Psyllid ID: psy15714

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-----
Protein Sequence
MLSGAQTTKGGDKDVKSKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQDKSCC
Secondary Structure (PSIPRED)
ccccccccccccccccccccccEEEEEEEcccccccEEEEEHHccccccccccccccccccEEEEEccEEEEEEccccccccccccccccccccccEEEEEEEcccccHHHHHccccHHHHHHHcccccEEEEcccccccccHHHHHHHHHcccccccHHHHHHHHHHccccEEEEccccccccHHHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccHHccccccEEEEEEEEEcccccHHHHHHHHHHccccccccccccccEEEEEEccccEEEEEEEcccccHHHcccHHHHcccccEEEEEEEcccHHHHHHHHHcHHHHHHHHcccccEEEEEEcHHHcccHHHHHHHHHcccccccHHHHHHHHHHccccEEEEccccccccHHHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
mlsgaqttkggdkdvksksVHKALKVttvgdgmvgKTCLLIThtenkfptdyvptvfdnypdtitvdnktydvtlwdtagqedyerlrpmsypntdcFLLCFSIGSTSSYENILSkwypelkhhcpkvpiilvgtkadlrsenktidkkkaaEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQDKSCC
Flexible Loop (DISEMBL)
mlsgaqttkggdkdvksksvhkalkvttvgdgmvgKTCLLITHtenkfptdyvptvfdnypdtitvdnktydvTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSenktidkkkaaevdlvstsqgkkmrrKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQDKSCC
Low Complexity Region (SEG)
MLSGAQTTKGGDKDVKSKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQDKSCC
Disordered region (IsUnstruct)
**********************ALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTK**********************************AAEYLECSAKLNEGLDQVFIAAVR***********
Disordered Region (DISOPRED)
*************************VTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKT***********VSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQ*****
Disordered Region (DISEMBL)
******************SVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAE***************IKAAEYLECSAKLNEGLDQVFIAAVRS**********
Disordered Region (DISPRO)
*******************VHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQ*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLSGAQTTKGGDKDVKSKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQDKSCC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	205	2.2.26 [Sep-21-2011]
Q03206	191	Ras-related protein ced-1	yes	N/A	0.897	0.963	0.534	2e-58
Q24192	190	Ras-like GTP-binding prot	yes	N/A	0.824	0.889	0.567	1e-57
Q6RUV5	192	Ras-related C3 botulinum	yes	N/A	0.892	0.953	0.542	2e-57
P63001	192	Ras-related C3 botulinum	yes	N/A	0.892	0.953	0.542	2e-57
P63000	192	Ras-related C3 botulinum	yes	N/A	0.892	0.953	0.542	2e-57
P62999	192	Ras-related C3 botulinum	yes	N/A	0.892	0.953	0.542	2e-57
P62998	192	Ras-related C3 botulinum	yes	N/A	0.892	0.953	0.542	2e-57
P48554	192	Ras-related protein Rac2	no	N/A	0.858	0.916	0.556	5e-57
P34148	195	Rho-related protein racB	yes	N/A	0.858	0.902	0.551	1e-56
P15153	192	Ras-related C3 botulinum	no	N/A	0.892	0.953	0.521	1e-56

>sp|Q03206|RAC1_CAEEL Ras-related protein ced-10 OS=Caenorhabditis elegans GN=ced-10 PE=1 SV=2

 Score =  224 bits (572), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 100/187 (53%), Positives = 136/187 (72%), Gaps = 3/187 (1%)

Query: 22  KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
           +A+K   VGDG VGKTCLLI++T N FP +Y+PTVFDNY   + VD +  ++ LWDTAGQ
Sbjct: 2   QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGRPINLGLWDTAGQ 61

Query: 82  EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
           EDY+RLRP+SYP TD FL+CF++ + +S+EN+ +KWYPE+ HHCP  PIILVGTKADLR 
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFALNNPASFENVRAKWYPEVSHHCPNTPIILVGTKADLRE 121

Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV---K 198
           +  T+++ +   +  VS +QG  M ++IKA +YLECSA    GL QVF  A+R+ +   +
Sbjct: 122 DRDTVERLRERRLQPVSQTQGYVMAKEIKAVKYLECSALTQRGLKQVFDEAIRAVLTPPQ 181

Query: 199 KQDKSCC 205
           +  KS C
Sbjct: 182 RAKKSKC 188

Required in engulfing to control the phagocytosis of apoptotic cell corpses. Involved in hypodermal cell fusion, together with pak-1 and cdc-42, leading to embryonic body elongation, which involves dramatic cytoskeletal reorganization. Ced-2 and ced-5 function to activate ced-10 in a GTPase signaling pathway that controls the polarized extension of cell surfaces.
Caenorhabditis elegans (taxid: 6239)

>sp|Q24192|RHOL_DROME Ras-like GTP-binding protein RhoL OS=Drosophila melanogaster GN=RhoL PE=2 SV=1

 Score =  222 bits (566), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 101/178 (56%), Positives = 133/178 (74%), Gaps = 9/178 (5%)

Query: 22  KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
           + LK+T VGDGMVGKTC+LIT+T N+FP +Y+PTVFDN+   I VD++ Y++TLWDTAGQ
Sbjct: 10  RPLKITIVGDGMVGKTCMLITYTRNEFPEEYIPTVFDNHACNIAVDDRDYNLTLWDTAGQ 69

Query: 82  EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
           EDYERLRP+SYP+T+CFLLC+SI S +S+EN+ SKW+PE++H    VP++LVGTK DLR 
Sbjct: 70  EDYERLRPLSYPSTNCFLLCYSISSRTSFENVKSKWWPEIRHFSAHVPVVLVGTKLDLRI 129

Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKK 199
            N             V+T +GKKMR++I A   +ECSAK  + L QVF  AVR+  +K
Sbjct: 130 PNSE---------KFVTTQEGKKMRKEIHAFNLVECSAKKKQNLQQVFEEAVRAVERK 178

Essential for the maturation of hemocytes.

Drosophila melanogaster (taxid: 7227)

>sp|Q6RUV5|RAC1_RAT Ras-related C3 botulinum toxin substrate 1 OS=Rattus norvegicus GN=Rac1 PE=1 SV=1

 Score =  221 bits (564), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 102/188 (54%), Positives = 134/188 (71%), Gaps = 5/188 (2%)

Query: 22  KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
           +A+K   VGDG VGKTCLLI++T N FP +Y+PTVFDNY   + VD K  ++ LWDTAGQ
Sbjct: 2   QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61

Query: 82  EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
           EDY+RLRP+SYP TD FL+CFS+ S +S+EN+ +KWYPE++HHCP  PIILVGTK DLR 
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 121

Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSA----- 196
           +  TI+K K  ++  ++  QG  M ++I A +YLECSA    GL  VF  A+R+      
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPP 181

Query: 197 VKKQDKSC 204
           VKK+ + C
Sbjct: 182 VKKRKRKC 189

Plasma membrane-associated small GTPase which cycles between active GTP-bound and inactive GDP-bound states. In its active state, binds to a variety of effector proteins to regulate cellular responses such as secretory processes, phagocytosis of apoptotic cells, epithelial cell polarization and growth-factor induced formation of membrane ruffles. Rac1 p21/rho GDI heterodimer is the active component of the cytosolic factor sigma 1, which is involved in stimulation of the NADPH oxidase activity in macrophages. Essential for the SPATA13-mediated regulation of cell migration and adhesion assembly and disassembly (By similarity). Stimulates PKN2 kinase activity (By similarity). In concert with RAB7A, plays a role in regulating the formation of RBs (ruffled borders) in osteoclasts.

Rattus norvegicus (taxid: 10116)

>sp|P63001|RAC1_MOUSE Ras-related C3 botulinum toxin substrate 1 OS=Mus musculus GN=Rac1 PE=1 SV=1

 Score =  221 bits (564), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 102/188 (54%), Positives = 134/188 (71%), Gaps = 5/188 (2%)

Query: 22  KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
           +A+K   VGDG VGKTCLLI++T N FP +Y+PTVFDNY   + VD K  ++ LWDTAGQ
Sbjct: 2   QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61

Query: 82  EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
           EDY+RLRP+SYP TD FL+CFS+ S +S+EN+ +KWYPE++HHCP  PIILVGTK DLR 
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 121

Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSA----- 196
           +  TI+K K  ++  ++  QG  M ++I A +YLECSA    GL  VF  A+R+      
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPP 181

Query: 197 VKKQDKSC 204
           VKK+ + C
Sbjct: 182 VKKRKRKC 189

Plasma membrane-associated small GTPase which cycles between active GTP-bound and inactive GDP-bound states. In its active state, binds to a variety of effector proteins to regulate cellular responses such as secretory processes, phagocytosis of apoptotic cells, epithelial cell polarization and growth-factor induced formation of membrane ruffles. Rac1 p21/rho GDI heterodimer is the active component of the cytosolic factor sigma 1, which is involved in stimulation of the NADPH oxidase activity in macrophages. Essential for the SPATA13-mediated regulation of cell migration and adhesion assembly and disassembly. Stimulates PKN2 kinase activity. In concert with RAB7A, plays a role in regulating the formation of RBs (ruffled borders) in osteoclasts.

Mus musculus (taxid: 10090)

>sp|P63000|RAC1_HUMAN Ras-related C3 botulinum toxin substrate 1 OS=Homo sapiens GN=RAC1 PE=1 SV=1

 Score =  221 bits (564), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 102/188 (54%), Positives = 134/188 (71%), Gaps = 5/188 (2%)

Query: 22  KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
           +A+K   VGDG VGKTCLLI++T N FP +Y+PTVFDNY   + VD K  ++ LWDTAGQ
Sbjct: 2   QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61

Query: 82  EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
           EDY+RLRP+SYP TD FL+CFS+ S +S+EN+ +KWYPE++HHCP  PIILVGTK DLR 
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 121

Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSA----- 196
           +  TI+K K  ++  ++  QG  M ++I A +YLECSA    GL  VF  A+R+      
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPP 181

Query: 197 VKKQDKSC 204
           VKK+ + C
Sbjct: 182 VKKRKRKC 189

Isoform B has an accelerated GEF-independent GDP/GTP exchange and an impaired GTP hydrolysis, which is restored partially by GTPase-activating proteins. It is able to bind to the GTPase-binding domain of PAK but not full-length PAK in a GTP-dependent manner, suggesting that the insertion does not completely abolish effector interaction.

Homo sapiens (taxid: 9606)

>sp|P62999|RAC1_CANFA Ras-related C3 botulinum toxin substrate 1 OS=Canis familiaris GN=RAC1 PE=2 SV=1

 Score =  221 bits (564), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 102/188 (54%), Positives = 134/188 (71%), Gaps = 5/188 (2%)

Query: 22  KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
           +A+K   VGDG VGKTCLLI++T N FP +Y+PTVFDNY   + VD K  ++ LWDTAGQ
Sbjct: 2   QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61

Query: 82  EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
           EDY+RLRP+SYP TD FL+CFS+ S +S+EN+ +KWYPE++HHCP  PIILVGTK DLR 
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 121

Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSA----- 196
           +  TI+K K  ++  ++  QG  M ++I A +YLECSA    GL  VF  A+R+      
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPP 181

Query: 197 VKKQDKSC 204
           VKK+ + C
Sbjct: 182 VKKRKRKC 189

Plasma membrane-associated small GTPase which cycles between active GTP-bound and inactive GDP-bound states. In its active state, binds to a variety of effector proteins to regulate cellular responses such as secretory processes, phagocytosis of apoptotic cells, epithelial cell polarization and growth-factor induced formation of membrane ruffles. Rac1 p21/rho GDI heterodimer is the active component of the cytosolic factor sigma 1, which is involved in stimulation of the NADPH oxidase activity in macrophages. Essential for the SPATA13-mediated regulation of cell migration and adhesion assembly and disassembly. Stimulates PKN2 kinase activity. In concert with RAB7A, plays a role in regulating the formation of RBs (ruffled borders) in osteoclasts.

Canis familiaris (taxid: 9615)

>sp|P62998|RAC1_BOVIN Ras-related C3 botulinum toxin substrate 1 OS=Bos taurus GN=RAC1 PE=1 SV=1

 Score =  221 bits (564), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 102/188 (54%), Positives = 134/188 (71%), Gaps = 5/188 (2%)

Query: 22  KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
           +A+K   VGDG VGKTCLLI++T N FP +Y+PTVFDNY   + VD K  ++ LWDTAGQ
Sbjct: 2   QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61

Query: 82  EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
           EDY+RLRP+SYP TD FL+CFS+ S +S+EN+ +KWYPE++HHCP  PIILVGTK DLR 
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 121

Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSA----- 196
           +  TI+K K  ++  ++  QG  M ++I A +YLECSA    GL  VF  A+R+      
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPP 181

Query: 197 VKKQDKSC 204
           VKK+ + C
Sbjct: 182 VKKRKRKC 189

Plasma membrane-associated small GTPase which cycles between active GTP-bound and inactive GDP-bound states. In its active state, binds to a variety of effector proteins to regulate cellular responses such as secretory processes, phagocytosis of apoptotic cells, epithelial cell polarization and growth-factor induced formation of membrane ruffles. Stimulates PKN2 kinase activity. In concert with RAB7A, plays a role in regulating the formation of RBs (ruffled borders) in osteoclasts.

Bos taurus (taxid: 9913)

>sp|P48554|RAC2_DROME Ras-related protein Rac2 OS=Drosophila melanogaster GN=Rac2 PE=1 SV=1

 Score =  220 bits (560), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 98/176 (55%), Positives = 132/176 (75%)

Query: 22  KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
           +A+K   VGDG VGKTCLLI++T N FP +Y+PTVFDNY   + VD K  ++ LWDTAGQ
Sbjct: 2   QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDAKPINLGLWDTAGQ 61

Query: 82  EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
           EDY+RLRP+SYP TD FL+CFS+ + +S+EN+ +KW+PE++HHCP VPIILVGTK DLR 
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVNPASFENVRAKWFPEVRHHCPSVPIILVGTKLDLRD 121

Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV 197
           + +TI+K K  ++  ++  QG  M ++I A +YLECSA   +GL  VF  A+RS +
Sbjct: 122 DKQTIEKLKDKKLTPITYPQGLAMAKEIAAVKYLECSALTQKGLKTVFDEAIRSVL 177

Drosophila melanogaster (taxid: 7227)

>sp|P34148|RACB_DICDI Rho-related protein racB OS=Dictyostelium discoideum GN=racB PE=1 SV=1

 Score =  219 bits (558), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 97/176 (55%), Positives = 132/176 (75%)

Query: 22  KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
           +++K+  VGDG VGKTCLLI++T N FPT+YVPTVFDNY   + VDNKT  + LWDTAGQ
Sbjct: 2   QSIKLVVVGDGAVGKTCLLISYTSNSFPTEYVPTVFDNYSANVMVDNKTVSLGLWDTAGQ 61

Query: 82  EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
           EDY+RLRP+SYP TD FL+CF+I S +SY N+ SKW+PE+ HHCP   IILVGTK DLR 
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFAIISQTSYTNVKSKWWPEVTHHCPNCTIILVGTKCDLRE 121

Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV 197
           + ++++K +      ++  QG++M ++IKA  Y+ECSA   +GL QVF  A+++ +
Sbjct: 122 DKESLEKLREKHQQPLTFQQGEQMAKEIKAFCYMECSALTQKGLKQVFDEAIKAVI 177

Dictyostelium discoideum (taxid: 44689)

>sp|P15153|RAC2_HUMAN Ras-related C3 botulinum toxin substrate 2 OS=Homo sapiens GN=RAC2 PE=1 SV=1

 Score =  219 bits (557), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 98/188 (52%), Positives = 136/188 (72%), Gaps = 5/188 (2%)

Query: 22  KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
           +A+K   VGDG VGKTCLLI++T N FP +Y+PTVFDNY   + VD+K  ++ LWDTAGQ
Sbjct: 2   QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQ 61

Query: 82  EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
           EDY+RLRP+SYP TD FL+CFS+ S +SYEN+ +KW+PE++HHCP  PIILVGTK DLR 
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRD 121

Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV---- 197
           +  TI+K K  ++  ++  QG  + ++I + +YLECSA    GL  VF  A+R+ +    
Sbjct: 122 DKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCPQP 181

Query: 198 -KKQDKSC 204
            ++Q ++C
Sbjct: 182 TRQQKRAC 189

Plasma membrane-associated small GTPase which cycles between an active GTP-bound and inactive GDP-bound state. In active state binds to a variety of effector proteins to regulate cellular responses, such as secretory processes, phagocytose of apoptotic cells and epithelial cell polarization. Augments the production of reactive oxygen species (ROS) by NADPH oxidase.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	205
229608932	196	rho-like [Nasonia vitripennis]	0.917	0.959	0.608	1e-67
242022255	218	GTPase_rho, putative [Pediculus humanus	0.824	0.775	0.623	2e-64
332021086	187	Ras-like GTP-binding protein RhoL [Acrom	0.848	0.930	0.603	2e-63
307186268	184	Ras-like GTP-binding protein RhoL [Campo	0.868	0.967	0.597	3e-63
350536861	203	ras-related C3 botulinum toxin substrate	0.843	0.852	0.601	8e-61
157167242	186	gtpase_rho [Aedes aegypti] gi|157167244|	0.824	0.908	0.606	6e-59
307197942	184	Ras-like GTP-binding protein RhoL [Harpe	0.868	0.967	0.587	2e-58
312377423	187	hypothetical protein AND_11260 [Anophele	0.824	0.903	0.601	3e-58
383850399	193	PREDICTED: ras-like GTP-binding protein	0.882	0.937	0.575	3e-58
221116683	192	PREDICTED: ras-related C3 botulinum toxi	0.858	0.916	0.573	2e-57

>gi|229608932|ref|NP_001153487.1| rho-like [Nasonia vitripennis]

 Score =  261 bits (666), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 123/202 (60%), Positives = 155/202 (76%), Gaps = 14/202 (6%)

Query: 8   TKGGDKDVKSK-SVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITV 66
           T  G++D +S  S  + +K+T VGDGMVGKTC+LIT+TE KFP +Y+PTVF+NYP  I V
Sbjct: 3   TGNGNEDKQSTMSRLRPIKITAVGDGMVGKTCMLITYTEKKFPMEYIPTVFENYPKKIEV 62

Query: 67  DNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCP 126
           D   YD TLWDTAGQEDYERLRP+SYPNTDCFLLCFSI + SSYENI SKWYPELK HCP
Sbjct: 63  DGHEYDATLWDTAGQEDYERLRPLSYPNTDCFLLCFSINARSSYENIASKWYPELKVHCP 122

Query: 127 KVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLD 186
            +PIIL+GTK+DLR+E+           D+++ ++ KKM++KI+A +YLECSAK+ EGLD
Sbjct: 123 NIPIILIGTKSDLRAESD----------DIITPNECKKMKKKIRAFKYLECSAKMQEGLD 172

Query: 187 QVFIAAVRSAVKKQD---KSCC 205
           +VF  AVR+ +K+     K CC
Sbjct: 173 EVFTEAVRAVLKRPSAARKLCC 194

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242022255|ref|XP_002431556.1| GTPase_rho, putative [Pediculus humanus corporis] gi|212516859|gb|EEB18818.1| GTPase_rho, putative [Pediculus humanus corporis]

 Score =  251 bits (640), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 111/178 (62%), Positives = 143/178 (80%), Gaps = 9/178 (5%)

Query: 22  KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
           + +K+T VGDGMVGKTC+LI++T   FPT+YVPTVFDNY D ITVD++T+++ +WDTAGQ
Sbjct: 38  RPMKITAVGDGMVGKTCMLISYTTKTFPTEYVPTVFDNYADNITVDDQTFNMIIWDTAGQ 97

Query: 82  EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
           EDYERLRP+SYPNTDCFLLCFS+ S SSY+NI SKW PE++H CP VPI+LVGTK D+R+
Sbjct: 98  EDYERLRPLSYPNTDCFLLCFSVVSRSSYQNIYSKWTPEIRHLCPHVPIVLVGTKTDIRN 157

Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKK 199
           E          + + +S S+GKKM+ KIKA  Y+ECSAKL EGLD +F+ A+R+ +KK
Sbjct: 158 E---------KDSEHISHSEGKKMKNKIKAFAYMECSAKLMEGLDDIFLTAIRAVIKK 206

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332021086|gb|EGI61473.1| Ras-like GTP-binding protein RhoL [Acromyrmex echinatior]

 Score =  247 bits (630), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 111/184 (60%), Positives = 146/184 (79%), Gaps = 10/184 (5%)

Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQED 83
           +K+TTVGDGMVGKTC+LIT+T+ +FPT+YVPTVFDNY D+I V  + +++TLWD+AGQED
Sbjct: 10  IKITTVGDGMVGKTCMLITYTKKEFPTEYVPTVFDNYVDSICVSGQQFEMTLWDSAGQED 69

Query: 84  YERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSEN 143
           YERLRP+SYPNTDCFL+CFS+ + SS+EN+ SKW+PELK HCP VPI+LVGTKADLR+  
Sbjct: 70  YERLRPLSYPNTDCFLVCFSVSARSSFENVASKWHPELKAHCPNVPIVLVGTKADLRNHQ 129

Query: 144 KTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKK--QD 201
           + +        D++S     KMRRKIKA +Y+ECSA   EGL++VF+ A+++ +KK    
Sbjct: 130 EAM--------DIISPRDCNKMRRKIKAVKYVECSAIKQEGLEEVFVEAIKAVLKKPRSR 181

Query: 202 KSCC 205
           K CC
Sbjct: 182 KLCC 185

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307186268|gb|EFN71931.1| Ras-like GTP-binding protein RhoL [Camponotus floridanus]

 Score =  246 bits (629), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 113/189 (59%), Positives = 148/189 (78%), Gaps = 11/189 (5%)

Query: 19  SVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDT 78
           S ++ +K+TTVGDGMVGKTC+LIT+T  +FPT+YVPTVFDNY D I V  + +++TLWDT
Sbjct: 3   SRNRPIKITTVGDGMVGKTCMLITYTMKEFPTEYVPTVFDNYVDNICVGGQQFEMTLWDT 62

Query: 79  AGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKAD 138
           AGQEDYERLRP+SYPNTDCFL+CFSI + SS+EN+ SKW+PELK HCP VPIILVGTK+D
Sbjct: 63  AGQEDYERLRPLSYPNTDCFLICFSISARSSFENVASKWHPELKAHCPNVPIILVGTKSD 122

Query: 139 LRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVK 198
           LR++           +D+VS+    KMR+KI+A +Y+ECSA   EGL++VF+ A+++ +K
Sbjct: 123 LRNQET---------MDIVSSRDCNKMRKKIRAIKYVECSAIRQEGLEEVFVEAIKAVLK 173

Query: 199 K--QDKSCC 205
           K    K CC
Sbjct: 174 KPRSRKLCC 182

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350536861|ref|NP_001233114.1| ras-related C3 botulinum toxin substrate 1 isoform Rac1-like [Acyrthosiphon pisum] gi|239790009|dbj|BAH71594.1| ACYPI005996 [Acyrthosiphon pisum]

 Score =  238 bits (608), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 110/183 (60%), Positives = 146/183 (79%), Gaps = 10/183 (5%)

Query: 22  KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
           + LK+TTVGDGMVGKTC+LIT+T  +FPT+YVPTVFDNY + + +D + Y++ LWDTAGQ
Sbjct: 21  RPLKITTVGDGMVGKTCMLITYTTKQFPTEYVPTVFDNYAENMVMDGQEYNMCLWDTAGQ 80

Query: 82  EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
           EDYERLRP+SYPNTDCFLLC+S+GS SS+ENI SKW+PE++HHCPK+P+IL+GTK DLR 
Sbjct: 81  EDYERLRPLSYPNTDCFLLCYSVGSRSSFENIASKWHPEIQHHCPKIPVILIGTKTDLR- 139

Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQD 201
                     ++ D ++  +GKKM +KI A +YLECSA  NEGLD +F  +VR+A+++  
Sbjct: 140 ---------LSQNDCITRKKGKKMMKKIGAVKYLECSALTNEGLDTIFTESVRAAIERPR 190

Query: 202 KSC 204
           K+C
Sbjct: 191 KNC 193

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157167242|ref|XP_001652240.1| gtpase_rho [Aedes aegypti] gi|157167244|ref|XP_001652241.1| gtpase_rho [Aedes aegypti] gi|157167246|ref|XP_001652242.1| gtpase_rho [Aedes aegypti] gi|108877366|gb|EAT41591.1| AAEL006786-PC [Aedes aegypti] gi|108877367|gb|EAT41592.1| AAEL006786-PB [Aedes aegypti] gi|108877368|gb|EAT41593.1| AAEL006786-PA [Aedes aegypti]

 Score =  232 bits (592), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 108/178 (60%), Positives = 137/178 (76%), Gaps = 9/178 (5%)

Query: 22  KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
           + LK+TTVGDGMVGKTC+LIT+T+N+FP +YVPTVFDN+   ITVD K Y +TLWDTAGQ
Sbjct: 7   RPLKITTVGDGMVGKTCMLITYTQNEFPVEYVPTVFDNHACNITVDEKEYALTLWDTAGQ 66

Query: 82  EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
           EDYERLRP+SYPNTDCFL+C+SI S +S++N+LSKWYPE++H+ P VPI+LVGTK+DLR 
Sbjct: 67  EDYERLRPLSYPNTDCFLICYSISSKTSFDNVLSKWYPEIRHYAPHVPIVLVGTKSDLRV 126

Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKK 199
                          V+T++GKK++ KIKA   +ECSAK    L +VF  AVR+  KK
Sbjct: 127 HGSE---------KFVTTAEGKKLKHKIKAYSLVECSAKKKLNLGEVFDEAVRAVEKK 175

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307197942|gb|EFN79027.1| Ras-like GTP-binding protein RhoL [Harpegnathos saltator]

 Score =  231 bits (588), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 111/189 (58%), Positives = 150/189 (79%), Gaps = 11/189 (5%)

Query: 19  SVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDT 78
           S ++ +K+TTVGDGMVGKTC+LIT+T+ +FPT+YVPTVFDNY DTI V+ + +++TLWDT
Sbjct: 3   SRNRKIKITTVGDGMVGKTCMLITYTKKEFPTEYVPTVFDNYVDTICVNGQQFEMTLWDT 62

Query: 79  AGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKAD 138
           AGQEDYERLRP+SYPNTDCFL+CFSI + SSYEN+ SKW+PE+K HCP VPI+LVGTK D
Sbjct: 63  AGQEDYERLRPLSYPNTDCFLVCFSISARSSYENVSSKWHPEIKTHCPNVPIVLVGTKGD 122

Query: 139 LRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVK 198
            R++           +D++++ +  KM++KIKA +Y+ECSA   EGL++VF+ A+R+ +K
Sbjct: 123 FRNQEI---------MDIITSRECNKMKKKIKAVKYVECSAIKQEGLEEVFMEAIRAVLK 173

Query: 199 K--QDKSCC 205
           K    K CC
Sbjct: 174 KPSSKKPCC 182

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312377423|gb|EFR24255.1| hypothetical protein AND_11260 [Anopheles darlingi]

 Score =  230 bits (587), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 107/178 (60%), Positives = 137/178 (76%), Gaps = 9/178 (5%)

Query: 22  KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
           + LK+TTVGDGMVGKTC+LIT+T+N+FP++YVPTVFDN+   ITVDN  Y +TLWDTAGQ
Sbjct: 8   RPLKITTVGDGMVGKTCMLITYTQNEFPSEYVPTVFDNHACNITVDNGAYALTLWDTAGQ 67

Query: 82  EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
           EDYERLRP+SYPNTDCFL+C+SI + +S++N+LSKW PE++H  P VPI+LVGTK+DLR 
Sbjct: 68  EDYERLRPLSYPNTDCFLICYSISNRTSFDNVLSKWCPEIRHFAPSVPIVLVGTKSDLRV 127

Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKK 199
                    A     V+T++GKK++ KIKA   +ECSAK    L +VF  AVR+  KK
Sbjct: 128 ---------AGSEKFVTTAEGKKLKHKIKAYSLVECSAKRKHNLAEVFEEAVRAVEKK 176

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383850399|ref|XP_003700783.1| PREDICTED: ras-like GTP-binding protein RhoL-like [Megachile rotundata]

 Score =  230 bits (586), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 110/191 (57%), Positives = 147/191 (76%), Gaps = 10/191 (5%)

Query: 16  KSKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTL 75
           K+ S H+ +K+TT+GDG VGKTC+LIT+T N+FP++YVPTVFDNY  TI+VD +  D+TL
Sbjct: 10  KTISRHRPIKITTIGDGTVGKTCMLITYTTNEFPSEYVPTVFDNYAGTISVDGQEIDMTL 69

Query: 76  WDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGT 135
           WDTAGQEDYER+RP+SYPNTDCFL+CFS+ + +SYEN+L KWYPE+KHHCP  P++LVGT
Sbjct: 70  WDTAGQEDYERIRPLSYPNTDCFLVCFSVNTRTSYENVLHKWYPEIKHHCPNTPVVLVGT 129

Query: 136 KADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRS 195
           K DLR+            V+ +     KKM++KIKA +Y+ECSA   E L++VF+ A+R+
Sbjct: 130 KGDLRN---------VESVETIMLKDCKKMKKKIKAYKYVECSALKRENLEEVFVEAIRA 180

Query: 196 AVKK-QDKSCC 205
            +KK  +K CC
Sbjct: 181 VLKKPSNKLCC 191

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|221116683|ref|XP_002158815.1| PREDICTED: ras-related C3 botulinum toxin substrate 1-like [Hydra magnipapillata]

 Score =  227 bits (579), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 101/176 (57%), Positives = 134/176 (76%)

Query: 22  KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
           +A+K   VGDG VGKTCLLI++T N FP +Y+PTVFDNY   + VD K  ++ LWDTAGQ
Sbjct: 2   QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQ 61

Query: 82  EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
           EDY+RLRP+SYP TD FL+CFS+ S +SYEN+ +KWYPE+ HHCP  PIILVGTK DLR 
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLTSPASYENVRAKWYPEVNHHCPNTPIILVGTKLDLRD 121

Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV 197
           + +TI+K K  ++  ++T+QG +M ++I A +YLECSA   +GL QVF  A+R+ +
Sbjct: 122 DKETIEKLKEKKLAPITTAQGLQMGKEITAVKYLECSALTQKGLKQVFDEAIRAVL 177

Source: Hydra magnipapillata

Species: Hydra magnipapillata

Genus: Hydra

Family: Hydridae

Order: Hydroida

Class: Hydrozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	205
WB|WBGene00000424	191	ced-10 [Caenorhabditis elegans	0.897	0.963	0.534	5.5e-54
UNIPROTKB|Q03206	191	ced-10 "Ras-related protein ce	0.897	0.963	0.534	5.5e-54
UNIPROTKB|P62998	192	RAC1 "Ras-related C3 botulinum	0.892	0.953	0.542	1.5e-53
UNIPROTKB|P62999	192	RAC1 "Ras-related C3 botulinum	0.892	0.953	0.542	1.5e-53
UNIPROTKB|P63000	192	RAC1 "Ras-related C3 botulinum	0.892	0.953	0.542	1.5e-53
MGI|MGI:97845	192	Rac1 "RAS-related C3 botulinum	0.892	0.953	0.542	1.5e-53
RGD|619755	192	Rac1 "ras-related C3 botulinum	0.892	0.953	0.542	1.5e-53
ZFIN|ZDB-GENE-080220-21	192	rac3b "ras-related C3 botulinu	0.892	0.953	0.542	1.9e-53
ZFIN|ZDB-GENE-040718-256	192	rac3a "ras-related C3 botulinu	0.892	0.953	0.542	2.4e-53
ZFIN|ZDB-GENE-040625-27	219	rac2 "ras-related C3 botulinum	0.873	0.817	0.553	3e-53

WB|WBGene00000424 ced-10 [Caenorhabditis elegans (taxid:6239)]

 Score = 558 (201.5 bits), Expect = 5.5e-54, P = 5.5e-54
 Identities = 100/187 (53%), Positives = 136/187 (72%)

Query:    22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
             +A+K   VGDG VGKTCLLI++T N FP +Y+PTVFDNY   + VD +  ++ LWDTAGQ
Sbjct:     2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGRPINLGLWDTAGQ 61

Query:    82 EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
             EDY+RLRP+SYP TD FL+CF++ + +S+EN+ +KWYPE+ HHCP  PIILVGTKADLR 
Sbjct:    62 EDYDRLRPLSYPQTDVFLVCFALNNPASFENVRAKWYPEVSHHCPNTPIILVGTKADLRE 121

Query:   142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV---K 198
             +  T+++ +   +  VS +QG  M ++IKA +YLECSA    GL QVF  A+R+ +   +
Sbjct:   122 DRDTVERLRERRLQPVSQTQGYVMAKEIKAVKYLECSALTQRGLKQVFDEAIRAVLTPPQ 181

Query:   199 KQDKSCC 205
             +  KS C
Sbjct:   182 RAKKSKC 188

GO:0003924 "GTPase activity" evidence=IEA;IDA

GO:0005525 "GTP binding" evidence=IEA;IDA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006913 "nucleocytoplasmic transport" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0040039 "inductive cell migration" evidence=IMP

GO:0040035 "hermaphrodite genitalia development" evidence=IMP

GO:0002009 "morphogenesis of an epithelium" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IGI;IMP

GO:0016477 "cell migration" evidence=IGI;IMP

GO:0040026 "positive regulation of vulval development" evidence=IMP

GO:0007411 "axon guidance" evidence=IMP

GO:0043652 "engulfment of apoptotic cell" evidence=IMP

GO:0033563 "dorsal/ventral axon guidance" evidence=IGI

GO:0048846 "axon extension involved in axon guidance" evidence=IGI

GO:0048812 "neuron projection morphogenesis" evidence=IGI

GO:0008045 "motor neuron axon guidance" evidence=IGI

GO:0001764 "neuron migration" evidence=IGI

GO:0010171 "body morphogenesis" evidence=IGI

GO:0005886 "plasma membrane" evidence=IDA

GO:0031410 "cytoplasmic vesicle" evidence=IDA

GO:0009898 "internal side of plasma membrane" evidence=IDA

GO:0031103 "axon regeneration" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q03206 ced-10 "Ras-related protein ced-10" [Caenorhabditis elegans (taxid:6239)]

 Score = 558 (201.5 bits), Expect = 5.5e-54, P = 5.5e-54
 Identities = 100/187 (53%), Positives = 136/187 (72%)

Query:    22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
             +A+K   VGDG VGKTCLLI++T N FP +Y+PTVFDNY   + VD +  ++ LWDTAGQ
Sbjct:     2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGRPINLGLWDTAGQ 61

Query:    82 EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
             EDY+RLRP+SYP TD FL+CF++ + +S+EN+ +KWYPE+ HHCP  PIILVGTKADLR 
Sbjct:    62 EDYDRLRPLSYPQTDVFLVCFALNNPASFENVRAKWYPEVSHHCPNTPIILVGTKADLRE 121

Query:   142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV---K 198
             +  T+++ +   +  VS +QG  M ++IKA +YLECSA    GL QVF  A+R+ +   +
Sbjct:   122 DRDTVERLRERRLQPVSQTQGYVMAKEIKAVKYLECSALTQRGLKQVFDEAIRAVLTPPQ 181

Query:   199 KQDKSCC 205
             +  KS C
Sbjct:   182 RAKKSKC 188

GO:0006184 "GTP catabolic process" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0016021 "integral to membrane" evidence=IDA

GO:0050764 "regulation of phagocytosis" evidence=IMP

GO:0030334 "regulation of cell migration" evidence=IDA

GO:0007264 "small GTPase mediated signal transduction" evidence=IDA

GO:0005525 "GTP binding" evidence=IDA

GO:0003924 "GTPase activity" evidence=IDA

UNIPROTKB|P62998 RAC1 "Ras-related C3 botulinum toxin substrate 1" [Bos taurus (taxid:9913)]

 Score = 554 (200.1 bits), Expect = 1.5e-53, P = 1.5e-53
 Identities = 102/188 (54%), Positives = 134/188 (71%)

Query:    22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
             +A+K   VGDG VGKTCLLI++T N FP +Y+PTVFDNY   + VD K  ++ LWDTAGQ
Sbjct:     2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61

Query:    82 EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
             EDY+RLRP+SYP TD FL+CFS+ S +S+EN+ +KWYPE++HHCP  PIILVGTK DLR 
Sbjct:    62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 121

Query:   142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSA----- 196
             +  TI+K K  ++  ++  QG  M ++I A +YLECSA    GL  VF  A+R+      
Sbjct:   122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPP 181

Query:   197 VKKQDKSC 204
             VKK+ + C
Sbjct:   182 VKKRKRKC 189

GO:0005525 "GTP binding" evidence=ISS

GO:0030334 "regulation of cell migration" evidence=ISS

GO:0048870 "cell motility" evidence=ISS

GO:0042470 "melanosome" evidence=IEA

GO:0097178 "ruffle assembly" evidence=IEA

GO:0090103 "cochlea morphogenesis" evidence=IEA

GO:0071542 "dopaminergic neuron differentiation" evidence=IEA

GO:0060263 "regulation of respiratory burst" evidence=IEA

GO:0060071 "Wnt receptor signaling pathway, planar cell polarity pathway" evidence=IEA

GO:0051668 "localization within membrane" evidence=IEA

GO:0048813 "dendrite morphogenesis" evidence=IEA

GO:0048532 "anatomical structure arrangement" evidence=IEA

GO:0045216 "cell-cell junction organization" evidence=IEA

GO:0043652 "engulfment of apoptotic cell" evidence=IEA

GO:0043552 "positive regulation of phosphatidylinositol 3-kinase activity" evidence=IEA

GO:0034446 "substrate adhesion-dependent cell spreading" evidence=IEA

GO:0032707 "negative regulation of interleukin-23 production" evidence=IEA

GO:0032587 "ruffle membrane" evidence=IEA

GO:0031996 "thioesterase binding" evidence=IEA

GO:0030838 "positive regulation of actin filament polymerization" evidence=IEA

GO:0030742 "GTP-dependent protein binding" evidence=IEA

GO:0030032 "lamellipodium assembly" evidence=IEA

GO:0030027 "lamellipodium" evidence=IEA

GO:0021831 "embryonic olfactory bulb interneuron precursor migration" evidence=IEA

GO:0021799 "cerebral cortex radially oriented cell migration" evidence=IEA

GO:0019897 "extrinsic to plasma membrane" evidence=IEA

GO:0010592 "positive regulation of lamellipodium assembly" evidence=IEA

GO:0007411 "axon guidance" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0007010 "cytoskeleton organization" evidence=IEA

GO:0006972 "hyperosmotic response" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0003382 "epithelial cell morphogenesis" evidence=IEA

GO:0002093 "auditory receptor cell morphogenesis" evidence=IEA

GO:0001891 "phagocytic cup" evidence=IEA

UNIPROTKB|P62999 RAC1 "Ras-related C3 botulinum toxin substrate 1" [Canis lupus familiaris (taxid:9615)]

 Score = 554 (200.1 bits), Expect = 1.5e-53, P = 1.5e-53
 Identities = 102/188 (54%), Positives = 134/188 (71%)

Query:    22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
             +A+K   VGDG VGKTCLLI++T N FP +Y+PTVFDNY   + VD K  ++ LWDTAGQ
Sbjct:     2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61

Query:    82 EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
             EDY+RLRP+SYP TD FL+CFS+ S +S+EN+ +KWYPE++HHCP  PIILVGTK DLR 
Sbjct:    62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 121

Query:   142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSA----- 196
             +  TI+K K  ++  ++  QG  M ++I A +YLECSA    GL  VF  A+R+      
Sbjct:   122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPP 181

Query:   197 VKKQDKSC 204
             VKK+ + C
Sbjct:   182 VKKRKRKC 189

GO:0005525 "GTP binding" evidence=ISS

GO:0048870 "cell motility" evidence=ISS

GO:0030334 "regulation of cell migration" evidence=ISS

GO:0042470 "melanosome" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|P63000 RAC1 "Ras-related C3 botulinum toxin substrate 1" [Homo sapiens (taxid:9606)]

 Score = 554 (200.1 bits), Expect = 1.5e-53, P = 1.5e-53
 Identities = 102/188 (54%), Positives = 134/188 (71%)

Query:    22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
             +A+K   VGDG VGKTCLLI++T N FP +Y+PTVFDNY   + VD K  ++ LWDTAGQ
Sbjct:     2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61

Query:    82 EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
             EDY+RLRP+SYP TD FL+CFS+ S +S+EN+ +KWYPE++HHCP  PIILVGTK DLR 
Sbjct:    62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 121

Query:   142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSA----- 196
             +  TI+K K  ++  ++  QG  M ++I A +YLECSA    GL  VF  A+R+      
Sbjct:   122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPP 181

Query:   197 VKKQDKSC 204
             VKK+ + C
Sbjct:   182 VKKRKRKC 189

GO:0000139 "Golgi membrane" evidence=IEA

GO:0001891 "phagocytic cup" evidence=IEA

GO:0002093 "auditory receptor cell morphogenesis" evidence=IEA

GO:0002551 "mast cell chemotaxis" evidence=IEA

GO:0003382 "epithelial cell morphogenesis" evidence=IEA

GO:0006972 "hyperosmotic response" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

GO:0017137 "Rab GTPase binding" evidence=IEA

GO:0019897 "extrinsic to plasma membrane" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0021799 "cerebral cortex radially oriented cell migration" evidence=IEA

GO:0021831 "embryonic olfactory bulb interneuron precursor migration" evidence=IEA

GO:0030027 "lamellipodium" evidence=IEA

GO:0030742 "GTP-dependent protein binding" evidence=IEA

GO:0030838 "positive regulation of actin filament polymerization" evidence=IEA

GO:0032587 "ruffle membrane" evidence=IEA

GO:0034446 "substrate adhesion-dependent cell spreading" evidence=IEA

GO:0043552 "positive regulation of phosphatidylinositol 3-kinase activity" evidence=IEA

GO:0043652 "engulfment of apoptotic cell" evidence=IEA

GO:0045216 "cell-cell junction organization" evidence=IEA

GO:0045453 "bone resorption" evidence=IEA

GO:0045740 "positive regulation of DNA replication" evidence=IEA

GO:0048532 "anatomical structure arrangement" evidence=IEA

GO:0048813 "dendrite morphogenesis" evidence=IEA

GO:0060071 "Wnt receptor signaling pathway, planar cell polarity pathway" evidence=IEA

GO:0071542 "dopaminergic neuron differentiation" evidence=IEA

GO:0090103 "cochlea morphogenesis" evidence=IEA

GO:0097178 "ruffle assembly" evidence=IEA

GO:0042470 "melanosome" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005802 "trans-Golgi network" evidence=IDA

GO:0035025 "positive regulation of Rho protein signal transduction" evidence=TAS

GO:0003924 "GTPase activity" evidence=TAS

GO:0030041 "actin filament polymerization" evidence=TAS

GO:0030032 "lamellipodium assembly" evidence=IMP

GO:0031529 "ruffle organization" evidence=IDA;TAS

GO:0048261 "negative regulation of receptor-mediated endocytosis" evidence=TAS

GO:0031996 "thioesterase binding" evidence=IPI

GO:0030334 "regulation of cell migration" evidence=IMP

GO:0005525 "GTP binding" evidence=IDA

GO:0048870 "cell motility" evidence=IDA

GO:0006928 "cellular component movement" evidence=TAS

GO:0006954 "inflammatory response" evidence=TAS

GO:0007155 "cell adhesion" evidence=TAS

GO:0035556 "intracellular signal transduction" evidence=TAS

GO:0009653 "anatomical structure morphogenesis" evidence=TAS

GO:0009611 "response to wounding" evidence=TAS

GO:0010592 "positive regulation of lamellipodium assembly" evidence=IDA

GO:0030036 "actin cytoskeleton organization" evidence=IGI

GO:0005829 "cytosol" evidence=TAS

GO:0005886 "plasma membrane" evidence=TAS

GO:0006915 "apoptotic process" evidence=TAS

GO:0007264 "small GTPase mediated signal transduction" evidence=TAS

GO:0007411 "axon guidance" evidence=TAS

GO:0007596 "blood coagulation" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0030168 "platelet activation" evidence=TAS

GO:0031295 "T cell costimulation" evidence=TAS

GO:0048011 "neurotrophin TRK receptor signaling pathway" evidence=TAS

GO:0050690 "regulation of defense response to virus by virus" evidence=TAS

GO:0051056 "regulation of small GTPase mediated signal transduction" evidence=TAS

GO:0019899 "enzyme binding" evidence=IPI

GO:0060263 "regulation of respiratory burst" evidence=IDA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=TAS

GO:0051668 "localization within membrane" evidence=IMP

GO:0007160 "cell-matrix adhesion" evidence=NAS

GO:0032707 "negative regulation of interleukin-23 production" evidence=IDA

MGI|MGI:97845 Rac1 "RAS-related C3 botulinum substrate 1" [Mus musculus (taxid:10090)]

 Score = 554 (200.1 bits), Expect = 1.5e-53, P = 1.5e-53
 Identities = 102/188 (54%), Positives = 134/188 (71%)

Query:    22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
             +A+K   VGDG VGKTCLLI++T N FP +Y+PTVFDNY   + VD K  ++ LWDTAGQ
Sbjct:     2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61

Query:    82 EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
             EDY+RLRP+SYP TD FL+CFS+ S +S+EN+ +KWYPE++HHCP  PIILVGTK DLR 
Sbjct:    62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 121

Query:   142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSA----- 196
             +  TI+K K  ++  ++  QG  M ++I A +YLECSA    GL  VF  A+R+      
Sbjct:   122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPP 181

Query:   197 VKKQDKSC 204
             VKK+ + C
Sbjct:   182 VKKRKRKC 189

GO:0000139 "Golgi membrane" evidence=ISO

GO:0000166 "nucleotide binding" evidence=IEA

GO:0001891 "phagocytic cup" evidence=IDA

GO:0002093 "auditory receptor cell morphogenesis" evidence=IMP

GO:0002551 "mast cell chemotaxis" evidence=ISO

GO:0003382 "epithelial cell morphogenesis" evidence=IMP

GO:0003924 "GTPase activity" evidence=ISO;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005525 "GTP binding" evidence=ISO;IDA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO;IDA

GO:0005802 "trans-Golgi network" evidence=ISO

GO:0005886 "plasma membrane" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=IDA

GO:0006897 "endocytosis" evidence=IDA

GO:0006911 "phagocytosis, engulfment" evidence=IMP

GO:0006928 "cellular component movement" evidence=ISO

GO:0006935 "chemotaxis" evidence=ISO

GO:0006972 "hyperosmotic response" evidence=IDA

GO:0007010 "cytoskeleton organization" evidence=IDA

GO:0007015 "actin filament organization" evidence=ISO

GO:0007155 "cell adhesion" evidence=IDA

GO:0007264 "small GTPase mediated signal transduction" evidence=IDA

GO:0007411 "axon guidance" evidence=IMP

GO:0008283 "cell proliferation" evidence=ISO

GO:0010592 "positive regulation of lamellipodium assembly" evidence=ISO

GO:0016020 "membrane" evidence=IDA

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IDA

GO:0016358 "dendrite development" evidence=IDA

GO:0016477 "cell migration" evidence=IDA

GO:0017137 "Rab GTPase binding" evidence=ISO

GO:0019897 "extrinsic to plasma membrane" evidence=IDA

GO:0019899 "enzyme binding" evidence=ISO

GO:0019901 "protein kinase binding" evidence=ISO

GO:0021799 "cerebral cortex radially oriented cell migration" evidence=IMP

GO:0021831 "embryonic olfactory bulb interneuron precursor migration" evidence=IMP

GO:0030027 "lamellipodium" evidence=IDA

GO:0030032 "lamellipodium assembly" evidence=ISO;IDA;TAS

GO:0030036 "actin cytoskeleton organization" evidence=ISO

GO:0030334 "regulation of cell migration" evidence=ISO;IMP

GO:0030742 "GTP-dependent protein binding" evidence=IPI

GO:0030838 "positive regulation of actin filament polymerization" evidence=IDA

GO:0031410 "cytoplasmic vesicle" evidence=ISO

GO:0031529 "ruffle organization" evidence=ISO

GO:0031996 "thioesterase binding" evidence=ISO

GO:0032587 "ruffle membrane" evidence=IDA

GO:0032707 "negative regulation of interleukin-23 production" evidence=ISO

GO:0034446 "substrate adhesion-dependent cell spreading" evidence=IDA

GO:0042995 "cell projection" evidence=IDA

GO:0043552 "positive regulation of phosphatidylinositol 3-kinase activity" evidence=IMP

GO:0043652 "engulfment of apoptotic cell" evidence=IDA

GO:0045216 "cell-cell junction organization" evidence=IMP

GO:0045453 "bone resorption" evidence=ISO

GO:0045740 "positive regulation of DNA replication" evidence=ISO

GO:0048532 "anatomical structure arrangement" evidence=IMP

GO:0048813 "dendrite morphogenesis" evidence=IGI

GO:0048870 "cell motility" evidence=ISO

GO:0051668 "localization within membrane" evidence=ISO

GO:0060071 "Wnt receptor signaling pathway, planar cell polarity pathway" evidence=IGI

GO:0060263 "regulation of respiratory burst" evidence=ISO

GO:0071542 "dopaminergic neuron differentiation" evidence=IGI

GO:0090103 "cochlea morphogenesis" evidence=IMP

GO:0097178 "ruffle assembly" evidence=IMP

RGD|619755 Rac1 "ras-related C3 botulinum toxin substrate 1" [Rattus norvegicus (taxid:10116)]

 Score = 554 (200.1 bits), Expect = 1.5e-53, P = 1.5e-53
 Identities = 102/188 (54%), Positives = 134/188 (71%)

Query:    22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
             +A+K   VGDG VGKTCLLI++T N FP +Y+PTVFDNY   + VD K  ++ LWDTAGQ
Sbjct:     2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61

Query:    82 EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
             EDY+RLRP+SYP TD FL+CFS+ S +S+EN+ +KWYPE++HHCP  PIILVGTK DLR 
Sbjct:    62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 121

Query:   142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSA----- 196
             +  TI+K K  ++  ++  QG  M ++I A +YLECSA    GL  VF  A+R+      
Sbjct:   122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPP 181

Query:   197 VKKQDKSC 204
             VKK+ + C
Sbjct:   182 VKKRKRKC 189

GO:0000139 "Golgi membrane" evidence=IDA

GO:0001891 "phagocytic cup" evidence=IEA;ISO

GO:0002093 "auditory receptor cell morphogenesis" evidence=IEA;ISO

GO:0002551 "mast cell chemotaxis" evidence=IMP

GO:0003382 "epithelial cell morphogenesis" evidence=IEA;ISO

GO:0003924 "GTPase activity" evidence=ISO;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005525 "GTP binding" evidence=ISO;IDA

GO:0005737 "cytoplasm" evidence=ISO;IDA

GO:0005802 "trans-Golgi network" evidence=ISO

GO:0006184 "GTP catabolic process" evidence=ISO

GO:0006897 "endocytosis" evidence=ISO

GO:0006911 "phagocytosis, engulfment" evidence=ISO

GO:0006928 "cellular component movement" evidence=IMP

GO:0006935 "chemotaxis" evidence=IMP

GO:0006972 "hyperosmotic response" evidence=IEA;ISO

GO:0007010 "cytoskeleton organization" evidence=ISO

GO:0007015 "actin filament organization" evidence=IMP

GO:0007155 "cell adhesion" evidence=ISO

GO:0007264 "small GTPase mediated signal transduction" evidence=ISO

GO:0007411 "axon guidance" evidence=IEA;ISO

GO:0008283 "cell proliferation" evidence=IMP

GO:0010592 "positive regulation of lamellipodium assembly" evidence=IEA;ISO

GO:0016020 "membrane" evidence=ISO

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=ISO

GO:0016358 "dendrite development" evidence=ISO

GO:0016477 "cell migration" evidence=ISO

GO:0016601 "Rac protein signal transduction" evidence=TAS

GO:0017137 "Rab GTPase binding" evidence=IPI

GO:0019897 "extrinsic to plasma membrane" evidence=IEA;ISO

GO:0019899 "enzyme binding" evidence=ISO

GO:0019901 "protein kinase binding" evidence=IPI

GO:0021799 "cerebral cortex radially oriented cell migration" evidence=IEA;ISO

GO:0021831 "embryonic olfactory bulb interneuron precursor migration" evidence=IEA;ISO

GO:0030027 "lamellipodium" evidence=IEA;ISO

GO:0030032 "lamellipodium assembly" evidence=IEA;ISO

GO:0030036 "actin cytoskeleton organization" evidence=ISO;IDA

GO:0030334 "regulation of cell migration" evidence=ISO;ISS

GO:0030742 "GTP-dependent protein binding" evidence=IEA;ISO

GO:0030838 "positive regulation of actin filament polymerization" evidence=IEA;ISO

GO:0031410 "cytoplasmic vesicle" evidence=IDA

GO:0031529 "ruffle organization" evidence=ISO

GO:0031996 "thioesterase binding" evidence=IEA;ISO

GO:0032587 "ruffle membrane" evidence=IEA;ISO

GO:0032707 "negative regulation of interleukin-23 production" evidence=IEA;ISO

GO:0034446 "substrate adhesion-dependent cell spreading" evidence=IEA;ISO

GO:0042470 "melanosome" evidence=IEA

GO:0042995 "cell projection" evidence=ISO

GO:0043552 "positive regulation of phosphatidylinositol 3-kinase activity" evidence=IEA;ISO

GO:0043652 "engulfment of apoptotic cell" evidence=IEA;ISO

GO:0045216 "cell-cell junction organization" evidence=IEA;ISO

GO:0045453 "bone resorption" evidence=IDA

GO:0045740 "positive regulation of DNA replication" evidence=IMP

GO:0048532 "anatomical structure arrangement" evidence=IEA;ISO

GO:0048813 "dendrite morphogenesis" evidence=IEA;ISO

GO:0048870 "cell motility" evidence=ISO;ISS

GO:0051668 "localization within membrane" evidence=IEA;ISO

GO:0060071 "Wnt receptor signaling pathway, planar cell polarity pathway" evidence=IEA;ISO

GO:0060263 "regulation of respiratory burst" evidence=IEA;ISO

GO:0071542 "dopaminergic neuron differentiation" evidence=IEA;ISO

GO:0090103 "cochlea morphogenesis" evidence=IEA;ISO

GO:0097178 "ruffle assembly" evidence=IEA;ISO

ZFIN|ZDB-GENE-080220-21 rac3b "ras-related C3 botulinum toxin substrate 3b (rho family, small GTP binding protein Rac3)" [Danio rerio (taxid:7955)]

 Score = 553 (199.7 bits), Expect = 1.9e-53, P = 1.9e-53
 Identities = 102/188 (54%), Positives = 134/188 (71%)

Query:    22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
             +A+K   VGDG VGKTCLLI++T N FP +Y+PTVFDNY   + VD K  ++ LWDTAGQ
Sbjct:     2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61

Query:    82 EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
             EDY+RLRP+SYP TD FL+CFS+ S +S+EN+ +KWYPE++HHCP  PIILVGTK DLR 
Sbjct:    62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 121

Query:   142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSA----- 196
             +  TI++ +  ++  ++  QG  M R+I A +YLECSA    GL  VF  A+R+      
Sbjct:   122 DKDTIERLRDKKLSPITYPQGLAMAREIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPP 181

Query:   197 VKKQDKSC 204
             VKK+ K C
Sbjct:   182 VKKRGKRC 189

GO:0005525 "GTP binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

ZFIN|ZDB-GENE-040718-256 rac3a "ras-related C3 botulinum toxin substrate 3a (rho family, small GTP binding protein Rac3)" [Danio rerio (taxid:7955)]

 Score = 552 (199.4 bits), Expect = 2.4e-53, P = 2.4e-53
 Identities = 102/188 (54%), Positives = 134/188 (71%)

Query:    22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
             +A+K   VGDG VGKTCLLI++T N FP +Y+PTVFDNY   + VD K  ++ LWDTAGQ
Sbjct:     2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61

Query:    82 EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
             EDY+RLRP+SYP TD FL+CFS+ S +S+EN+ +KWYPE++HHCP  PIILVGTK DLR 
Sbjct:    62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 121

Query:   142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSA----- 196
             +  TI++ +  ++  ++  QG  M R+I A +YLECSA    GL  VF  A+R+      
Sbjct:   122 DKDTIERLRDKKLAPITYPQGLAMAREIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPP 181

Query:   197 VKKQDKSC 204
             VKK+ K C
Sbjct:   182 VKKRGKKC 189

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

ZFIN|ZDB-GENE-040625-27 rac2 "ras-related C3 botulinum toxin substrate 2 (rho family, small GTP binding protein Rac2)" [Danio rerio (taxid:7955)]

 Score = 551 (199.0 bits), Expect = 3.0e-53, P = 3.0e-53
 Identities = 99/179 (55%), Positives = 132/179 (73%)

Query:    22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
             +A+K   VGDG VGKTCLLI++T N FP +Y+PTVFDNY   + VD+K  ++ LWDTAGQ
Sbjct:     2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQ 61

Query:    82 EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
             EDY+RLRP+SYP TD FL+CFS+ S +S+EN+ +KWYPE++HHCP  PIILVGTK DLR 
Sbjct:    62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRD 121

Query:   142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQ 200
             E +TI+K K  ++  ++  QG  + ++I A +YLECSA    GL  VF  A+R+ +  Q
Sbjct:   122 EKETIEKLKEKKLAPITYPQGLALAKEIDAVKYLECSALTQRGLKTVFDEAIRAVLCPQ 180

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0009611 "response to wounding" evidence=IMP

GO:0002446 "neutrophil mediated immunity" evidence=IMP

GO:0002685 "regulation of leukocyte migration" evidence=IMP

GO:0032878 "regulation of establishment or maintenance of cell polarity" evidence=IMP

GO:0001780 "neutrophil homeostasis" evidence=IMP

GO:2000391 "positive regulation of neutrophil extravasation" evidence=IMP

GO:0016020 "membrane" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P34144	RAC1A_DICDI	No assigned EC number	0.5511	0.8585	0.9072	no	N/A
P34145	RAC1B_DICDI	No assigned EC number	0.5483	0.8878	0.9381	no	N/A
P34146	RAC1C_DICDI	No assigned EC number	0.5502	0.8975	0.9533	no	N/A
Q6RUV5	RAC1_RAT	No assigned EC number	0.5425	0.8926	0.9531	yes	N/A
Q9TU25	RAC2_BOVIN	No assigned EC number	0.5418	0.8731	0.9322	no	N/A
P34148	RACB_DICDI	No assigned EC number	0.5511	0.8585	0.9025	yes	N/A
P92978	RAC11_ARATH	No assigned EC number	0.5423	0.8439	0.8781	no	N/A
Q6Z808	RAC3_ORYSJ	No assigned EC number	0.5053	0.8975	0.8598	yes	N/A
Q2KJ93	CDC42_BOVIN	No assigned EC number	0.5111	0.8780	0.9424	no	N/A
Q9HF56	CDC42_ASHGO	No assigned EC number	0.5080	0.8926	0.9581	yes	N/A
Q16YG0	CDC42_AEDAE	No assigned EC number	0.5197	0.8634	0.9267	N/A	N/A
P40792	RAC1_DROME	No assigned EC number	0.5511	0.8585	0.9166	no	N/A
P40793	CDC42_DROME	No assigned EC number	0.5254	0.8634	0.9267	no	N/A
P62998	RAC1_BOVIN	No assigned EC number	0.5425	0.8926	0.9531	yes	N/A
P62999	RAC1_CANFA	No assigned EC number	0.5425	0.8926	0.9531	yes	N/A
Q94124	RAC2_CAEEL	No assigned EC number	0.5113	0.8585	0.9025	no	N/A
P19073	CDC42_YEAST	No assigned EC number	0.5080	0.8926	0.9581	yes	N/A
Q007T2	CDC42_PIG	No assigned EC number	0.5111	0.8780	0.9424	no	N/A
Q17031	CDC42_ANOGA	No assigned EC number	0.5254	0.8634	0.9267	no	N/A
P60763	RAC3_HUMAN	No assigned EC number	0.5397	0.8585	0.9166	no	N/A
Q38903	RAC2_ARATH	No assigned EC number	0.5359	0.8634	0.8805	yes	N/A
P60764	RAC3_MOUSE	No assigned EC number	0.5397	0.8585	0.9166	no	N/A
Q8CFN2	CDC42_RAT	No assigned EC number	0.5111	0.8780	0.9424	no	N/A
P60766	CDC42_MOUSE	No assigned EC number	0.5111	0.8780	0.9424	no	N/A
Q05144	RAC2_MOUSE	No assigned EC number	0.5212	0.8926	0.9531	no	N/A
P60952	CDC42_CANFA	No assigned EC number	0.5111	0.8780	0.9424	no	N/A
P60953	CDC42_HUMAN	No assigned EC number	0.5111	0.8780	0.9424	no	N/A
P15153	RAC2_HUMAN	No assigned EC number	0.5212	0.8926	0.9531	no	N/A
O88931	RAC2_CAVPO	No assigned EC number	0.5106	0.8926	0.9531	no	N/A
Q90694	CDC42_CHICK	No assigned EC number	0.5111	0.8780	0.9424	no	N/A
P48554	RAC2_DROME	No assigned EC number	0.5568	0.8585	0.9166	no	N/A
Q40220	RAC2_LOTJA	No assigned EC number	0.5303	0.8634	0.9030	N/A	N/A
Q01112	CDC42_SCHPO	No assigned EC number	0.5	0.8878	0.9479	yes	N/A
Q03206	RAC1_CAEEL	No assigned EC number	0.5347	0.8975	0.9633	yes	N/A
P84097	RHOG_CRICR	No assigned EC number	0.5026	0.8926	0.9581	N/A	N/A
P84096	RHOG_MOUSE	No assigned EC number	0.5026	0.8926	0.9581	no	N/A
P84095	RHOG_HUMAN	No assigned EC number	0.5026	0.8926	0.9581	no	N/A
Q4R4R6	CDC42_MACFA	No assigned EC number	0.5055	0.8780	0.9424	N/A	N/A
P48148	RHO1_DROME	No assigned EC number	0.5464	0.8829	0.9427	no	N/A
Q6EP31	RAC5_ORYSJ	No assigned EC number	0.5423	0.8439	0.8781	yes	N/A
P63001	RAC1_MOUSE	No assigned EC number	0.5425	0.8926	0.9531	yes	N/A
P63000	RAC1_HUMAN	No assigned EC number	0.5425	0.8926	0.9531	yes	N/A
Q38912	RAC3_ARATH	No assigned EC number	0.5277	0.8682	0.8989	no	N/A
Q29HY3	CDC42_DROPS	No assigned EC number	0.5197	0.8634	0.9267	no	N/A
Q24192	RHOL_DROME	No assigned EC number	0.5674	0.8243	0.8894	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	205
smart00174	174	smart00174, RHO, Rho (Ras homology) subfamily of R	6e-99
cd00157	171	cd00157, Rho, Ras homology family (Rho) of small g	7e-99
cd04132	197	cd04132, Rho4_like, Ras homology family 4 (Rho4) o	8e-84
cd01871	174	cd01871, Rac1_like, Ras-related C3 botulinum toxin	3e-83
cd01870	175	cd01870, RhoA_like, Ras homology family A (RhoA)-l	3e-76
cd01875	191	cd01875, RhoG, Ras homolog family, member G (RhoG)	1e-74
cd01874	175	cd01874, Cdc42, cell division cycle 42 (Cdc42) is	4e-73
cd04133	173	cd04133, Rop_like, Rho-related protein from plants	1e-69
pfam00071	162	pfam00071, Ras, Ras family	1e-67
cd04130	173	cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (W	5e-65
cd04129	190	cd04129, Rho2, Ras homology family 2 (Rho2) of sma	2e-60
cd04135	174	cd04135, Tc10, Rho GTPase TC10 (Tc10)	4e-60
cd04134	185	cd04134, Rho3, Ras homology family 3 (Rho3) of sma	3e-57
cd04131	176	cd04131, Rnd, Rho family GTPase subfamily Rnd incl	6e-52
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	8e-48
cd04172	182	cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases	4e-43
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	1e-39
cd00876	160	cd00876, Ras, Rat sarcoma (Ras) family of small gu	1e-38
cd04173	221	cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases	2e-38
smart00173	164	smart00173, RAS, Ras subfamily of RAS small GTPase	2e-36
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	3e-36
smart00010	166	smart00010, small_GTPase, Small GTPase of the Ras	4e-36
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	1e-34
cd04174	232	cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases	4e-34
cd01873	195	cd01873, RhoBTB, RhoBTB protein is an atypical mem	3e-29
cd04138	162	cd04138, H_N_K_Ras_like, Ras GTPase family contain	4e-29
cd04145	164	cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3	7e-27
cd04139	163	cd04139, RalA_RalB, Ral (Ras-like) family containi	5e-26
cd04137	180	cd04137, RheB, Ras Homolog Enriched in Brain (RheB	7e-26
cd01862	172	cd01862, Rab7, Rab GTPase family 7 (Rab7)	3e-25
cd04136	164	cd04136, Rap_like, Rap-like family consists of Rap	3e-25
cd04144	190	cd04144, Ras2, Rat sarcoma (Ras) family 2 of small	1e-24
cd01863	161	cd01863, Rab18, Rab GTPase family 18 (Rab18)	2e-24
cd04123	162	cd04123, Rab21, Rab GTPase family 21 (Rab21)	2e-24
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	4e-24
cd04177	168	cd04177, RSR1, RSR1/Bud1p family GTPase	5e-24
PTZ00369	189	PTZ00369, PTZ00369, Ras-like protein; Provisional	5e-23
cd04175	164	cd04175, Rap1, Rap1 family GTPase consists of Rap1	1e-22
cd01867	167	cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie	1e-22
cd01868	165	cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-	1e-22
cd04116	170	cd04116, Rab9, Rab GTPase family 9 (Rab9)	2e-21
cd01861	161	cd01861, Rab6, Rab GTPase family 6 (Rab6)	4e-21
cd01860	163	cd01860, Rab5_related, Rab-related GTPase family i	6e-21
cd04176	163	cd04176, Rap2, Rap2 family GTPase consists of Rap2	1e-20
cd04124	161	cd04124, RabL2, Rab GTPase-like family 2 (Rab-like	2e-20
cd04119	168	cd04119, RJL, Rab GTPase family J-like (RabJ-like)	2e-20
PLN03071	219	PLN03071, PLN03071, GTP-binding nuclear protein Ra	5e-20
cd01866	168	cd01866, Rab2, Rab GTPase family 2 (Rab2)	2e-19
cd04111	211	cd04111, Rab39, Rab GTPase family 39 (Rab39)	2e-19
PTZ00132	215	PTZ00132, PTZ00132, GTP-binding nuclear protein Ra	2e-19
cd00877	166	cd00877, Ran, Ras-related nuclear proteins (Ran)/T	5e-19
cd04141	172	cd04141, Rit_Rin_Ric, Ras-like protein in all tiss	6e-19
cd04113	161	cd04113, Rab4, Rab GTPase family 4 (Rab4)	2e-18
cd01869	166	cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t	2e-18
cd04127	180	cd04127, Rab27A, Rab GTPase family 27a (Rab27a)	2e-18
cd04117	164	cd04117, Rab15, Rab GTPase family 15 (Rab15)	7e-18
cd04122	166	cd04122, Rab14, Rab GTPase family 14 (Rab14)	6e-17
smart00176	200	smart00176, RAN, Ran (Ras-related nuclear proteins	1e-16
cd04115	170	cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu	3e-16
cd04106	162	cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-	4e-16
pfam08477	116	pfam08477, Miro, Miro-like protein	6e-16
PLN03108	210	PLN03108, PLN03108, Rab family protein; Provisiona	7e-16
cd04112	191	cd04112, Rab26, Rab GTPase family 26 (Rab26)	1e-15
cd01865	165	cd01865, Rab3, Rab GTPase family 3 contains Rab3A,	1e-15
PLN03118	211	PLN03118, PLN03118, Rab family protein; Provisiona	7e-15
cd04140	165	cd04140, ARHI_like, A Ras homolog member I (ARHI)	2e-14
cd04128	182	cd04128, Spg1, Septum-promoting GTPase (Spg1)	2e-14
cd04114	169	cd04114, Rab30, Rab GTPase family 30 (Rab30)	3e-14
cd01893	168	cd01893, Miro1, Mitochondrial Rho family 1 (Miro1)	3e-14
cd01864	165	cd01864, Rab19, Rab GTPase family 19 (Rab19)	6e-14
cd04146	166	cd04146, RERG_RasL11_like, Ras-related and Estroge	1e-13
cd04118	193	cd04118, Rab24, Rab GTPase family 24 (Rab24)	2e-13
cd04108	170	cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3	2e-13
cd04143	247	cd04143, Rhes_like, Ras homolog enriched in striat	2e-13
PLN03110	216	PLN03110, PLN03110, Rab GTPase; Provisional	7e-13
cd09914	161	cd09914, RocCOR, Ras of complex proteins (Roc) C-t	3e-12
cd04110	199	cd04110, Rab35, Rab GTPase family 35 (Rab35)	5e-12
cd04107	201	cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab1	6e-12
cd04148	219	cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfam	1e-11
cd04101	167	cd04101, RabL4, Rab GTPase-like family 4 (Rab-like	1e-11
cd04120	202	cd04120, Rab12, Rab GTPase family 12 (Rab12)	2e-11
cd04147	197	cd04147, Ras_dva, Ras - dorsal-ventral anterior lo	4e-11
cd04126	220	cd04126, Rab20, Rab GTPase family 20 (Rab20)	2e-10
cd04142	198	cd04142, RRP22, Ras-related protein on chromosome	5e-08
cd04121	189	cd04121, Rab40, Rab GTPase family 40 (Rab40) conta	8e-08
cd04109	213	cd04109, Rab28, Rab GTPase family 28 (Rab28)	1e-06
PTZ00099	176	PTZ00099, PTZ00099, rab6; Provisional	4e-06
cd04103	158	cd04103, Centaurin_gamma, Centaurin gamma (CENTG)	7e-05
TIGR03918	391	TIGR03918, GTP_HydF, [FeFe] hydrogenase H-cluster	8e-04

>gnl|CDD|197554 smart00174, RHO, Rho (Ras homology) subfamily of Ras-like small GTPases

 Score =  283 bits (727), Expect = 6e-99
 Identities = 97/171 (56%), Positives = 129/171 (75%)

Query: 29  VGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLR 88
           VGDG VGKTCLLI +T N FP DYVPTVF+NY   + VD K  ++ LWDTAGQEDY+RLR
Sbjct: 4   VGDGAVGKTCLLIVYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLR 63

Query: 89  PMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDK 148
           P+SYP+TD FL+CFS+ S +S+EN+  KWYPE+KH CP VPIILVGTK DLR++  T+++
Sbjct: 64  PLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNVPIILVGTKLDLRNDKSTLEE 123

Query: 149 KKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKK 199
               + + V+  QG+ + ++I A +YLECSA   EG+ +VF  A+R+A+ K
Sbjct: 124 LSKKKQEPVTYEQGQALAKRIGAVKYLECSALTQEGVREVFEEAIRAALNK 174

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. Length = 174

>gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases)

 Score =  283 bits (727), Expect = 7e-99
 Identities = 100/171 (58%), Positives = 132/171 (77%), Gaps = 1/171 (0%)

Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQED 83
           +K+  VGDG VGKTCLLI++T NKFPT+YVPTVFDNY   +TVD K  ++ LWDTAGQE+
Sbjct: 1   IKIVVVGDGAVGKTCLLISYTTNKFPTEYVPTVFDNYSANVTVDGKQVNLGLWDTAGQEE 60

Query: 84  YERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSEN 143
           Y+RLRP+SYP TD FLLCFS+ S SS+EN+ +KWYPE+KH+CP VPIILVGTK DLR + 
Sbjct: 61  YDRLRPLSYPQTDVFLLCFSVDSPSSFENVKTKWYPEIKHYCPNVPIILVGTKIDLRDDG 120

Query: 144 KTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
            T+ K +  +   ++  +G+K+ ++I A +Y+ECSA   EGL +VF  A+R
Sbjct: 121 NTLKKLEKKQ-KPITPEEGEKLAKEIGAVKYMECSALTQEGLKEVFDEAIR 170

Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171

>gnl|CDD|206704 cd04132, Rho4_like, Ras homology family 4 (Rho4) of small guanosine triphosphatases (GTPases)-like

 Score =  246 bits (630), Expect = 8e-84
 Identities = 87/181 (48%), Positives = 126/181 (69%), Gaps = 1/181 (0%)

Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDN-KTYDVTLWDTAGQE 82
           +K+  VGDG  GKTCLL+ + +  FP +YVPTVF+NY  T+ V N K  ++ LWDTAGQE
Sbjct: 4   VKIVVVGDGGCGKTCLLMVYAQGSFPEEYVPTVFENYVTTLQVPNGKIIELALWDTAGQE 63

Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSE 142
           DY+RLRP+SYP+ D  L+C+S+ + +S +N+  KWYPE+ H CP  PI+LVG K DLR +
Sbjct: 64  DYDRLRPLSYPDVDVILICYSVDNPTSLDNVEDKWYPEVNHFCPGTPIVLVGLKTDLRKD 123

Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQDK 202
             ++ K +A  ++ V+  QG+ + + I A  Y+ECSAKL E +D+VF AA+  A+ K  +
Sbjct: 124 KNSVSKLRAQGLEPVTPEQGESVAKSIGAVAYIECSAKLMENVDEVFDAAINVALSKSGR 183

Query: 203 S 203
           +
Sbjct: 184 A 184

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 197

>gnl|CDD|206663 cd01871, Rac1_like, Ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)-like consists of Rac1, Rac2 and Rac3

 Score =  244 bits (624), Expect = 3e-83
 Identities = 98/173 (56%), Positives = 127/173 (73%)

Query: 23  ALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQE 82
           A+K   VGDG VGKTCLLI++T N FP +Y+PTVFDNY   + VD K  ++ LWDTAGQE
Sbjct: 1   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQE 60

Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSE 142
           DY+RLRP+SYP TD FL+CFS+ S +S+EN+ +KWYPE++HHCP  PIILVGTK DLR +
Sbjct: 61  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDD 120

Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRS 195
             TI+K K  ++  ++  QG  M ++I A +YLECSA    GL  VF  A+R+
Sbjct: 121 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRA 173

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleotide association and is more efficiently activated by the RacGEF Tiam1. Both Rac1 and Rac3 have been implicated in the regulation of cell migration and invasion in human metastatic breast cancer. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206662 cd01870, RhoA_like, Ras homology family A (RhoA)-like includes RhoA, RhoB and RhoC

 Score =  226 bits (578), Expect = 3e-76
 Identities = 96/172 (55%), Positives = 119/172 (69%)

Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
           K+  VGDG  GKTCLLI  ++++FP  YVPTVF+NY   I VD K  ++ LWDTAGQEDY
Sbjct: 3   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 62

Query: 85  ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENK 144
           +RLRP+SYP+TD  L+CFSI S  S ENI  KW PE+KH CP VPIILVG K DLR++  
Sbjct: 63  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 122

Query: 145 TIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSA 196
           TI +    + + V   +G+ M  KI A  YLECSAK  EG+ +VF  A R+A
Sbjct: 123 TIRELAKMKQEPVKPEEGRAMAEKIGAFGYLECSAKTKEGVREVFEMATRAA 174

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranylgeranylated forms; however, RhoB can be present in palmitoylated, farnesylated, and geranylgeranylated forms. RhoA and RhoC are highly relevant for tumor progression and invasiveness; however, RhoB has recently been suggested to be a tumor suppressor. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|133277 cd01875, RhoG, Ras homolog family, member G (RhoG) of small guanosine triphosphatases (GTPases)

 Score =  222 bits (568), Expect = 1e-74
 Identities = 97/187 (51%), Positives = 129/187 (68%), Gaps = 4/187 (2%)

Query: 22  KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
           +++K   VGDG VGKTCLLI +T N FP +Y+PTVFDNY     VD +T  + LWDTAGQ
Sbjct: 2   QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQ 61

Query: 82  EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
           E+Y+RLR +SYP T+ F++CFSI S SSYEN+  KW+PE+ HHCP VPI+LVGTK DLR+
Sbjct: 62  EEYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRN 121

Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV---- 197
           +  T+ K K      ++  QG  + ++I A +YLECSA   +G+ +VF  AVR+ +    
Sbjct: 122 DADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALNQDGVKEVFAEAVRAVLNPTP 181

Query: 198 KKQDKSC 204
            K  KSC
Sbjct: 182 IKDTKSC 188

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 191

>gnl|CDD|206664 cd01874, Cdc42, cell division cycle 42 (Cdc42) is a small GTPase of the Rho family

 Score =  218 bits (557), Expect = 4e-73
 Identities = 93/174 (53%), Positives = 126/174 (72%)

Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQED 83
           +K   VGDG VGKTCLLI++T NKFP++YVPTVFDNY  T+ +  + Y + L+DTAGQED
Sbjct: 2   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 61

Query: 84  YERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSEN 143
           Y+RLRP+SYP TD FL+CFS+ S SS+EN+  KW PE+ HHCPK P +LVGT+ DLR + 
Sbjct: 62  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 121

Query: 144 KTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV 197
            TI+K    +   ++   G+K+ R +KA +Y+ECSA   +GL  VF  A+ +A+
Sbjct: 122 STIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 175

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addition, Cdc42 has been implicated in a number of human diseases through interactions with its regulators and downstream effectors. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|206705 cd04133, Rop_like, Rho-related protein from plants (Rop)-like

 Score =  209 bits (534), Expect = 1e-69
 Identities = 93/172 (54%), Positives = 124/172 (72%), Gaps = 2/172 (1%)

Query: 23  ALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQE 82
            +K  TVGDG VGKTC+LI++T N FPTDYVPTVFDN+   + VD  T ++ LWDTAGQE
Sbjct: 1   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTAGQE 60

Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSE 142
           DY RLRP+SY   D FLL FS+ S +SYEN+L KW PEL+H+ P VPI+LVGTK DLR +
Sbjct: 61  DYNRLRPLSYRGADVFLLAFSLISKASYENVLKKWIPELRHYAPGVPIVLVGTKLDLRDD 120

Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
            +       A    ++T+QG+++R++I AA Y+ECS+K  + +  VF AA++
Sbjct: 121 KQFFADHPGAVP--ITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDAAIK 170

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, Rop1, Rop3, and Rop5 are all involved in pollen-tube growth; Rop2 plays a role in response to low-oxygen environments, cell-morphology, and root-hair development; root-hair development is also regulated by Rop4 and Rop6; Rop6 is also responsible for ABA response, and ABA response is also regulated by Rop10. Plants retain some of the regulatory mechanisms that are shared by other members of the Rho family, but have also developed a number of unique modes for regulating Rops. Unique RhoGEFs have been identified that are exclusively active toward Rop proteins, such as those containing the domain PRONE (plant-specific Rop nucleotide exchanger). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|215692 pfam00071, Ras, Ras family

 Score =  203 bits (520), Expect = 1e-67
 Identities = 71/174 (40%), Positives = 99/174 (56%), Gaps = 16/174 (9%)

Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQED 83
           K+  VGDG VGK+ LLI  T+NKFP +Y+PT+  D Y  TI VD KT  + +WDTAGQE 
Sbjct: 1   KLVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQER 60

Query: 84  YERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPK-VPIILVGTKADLRSE 142
           +  LRP+ Y     FLL + I S  S+EN+  KW  E+  H  + VPI+LVG K DL  +
Sbjct: 61  FRALRPLYYRGAQGFLLVYDITSRDSFENV-KKWLEEILRHADENVPIVLVGNKCDLEDQ 119

Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSA 196
                         VST +G+ + +++    ++E SAK NE +++ F    R  
Sbjct: 120 RV------------VSTEEGEALAKELGLP-FMETSAKTNENVEEAFEELAREI 160

Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162

>gnl|CDD|133330 cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (Wrch-1) is a Rho family GTPase similar to Cdc42

 Score =  197 bits (503), Expect = 5e-65
 Identities = 83/173 (47%), Positives = 117/173 (67%)

Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQED 83
           LK   VGDG VGKT L++++T N +PT+YVPT FDN+   + VD K   + L DTAGQ++
Sbjct: 1   LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDE 60

Query: 84  YERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSEN 143
           +++LRP+ YP+TD FLLCFS+ + SS++NI  KW PE++ H PK PIILVGT+ADLR++ 
Sbjct: 61  FDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDV 120

Query: 144 KTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSA 196
             + +        VS S+ K +  KI A EY+ECSA   + L +VF  A+ + 
Sbjct: 121 NVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQKNLKEVFDTAILAG 173

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|206702 cd04129, Rho2, Ras homology family 2 (Rho2) of small guanosine triphosphatases (GTPases)

 Score =  186 bits (474), Expect = 2e-60
 Identities = 85/188 (45%), Positives = 111/188 (59%), Gaps = 9/188 (4%)

Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
           K+  VGDG  GKT LL   T  +FP +Y PTVF+NY     VD K   + LWDTAGQE+Y
Sbjct: 3   KLVIVGDGACGKTSLLYVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEY 62

Query: 85  ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENK 144
           ERLRP+SY      L+ F+I +  S EN+ +KW  E++ +CP VP+ILVG K DLR E  
Sbjct: 63  ERLRPLSYSKAHVILIGFAIDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQE-- 120

Query: 145 TIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQDK-- 202
            + K   A  + V   Q K + R I A +Y+ECSA   EG+D VF AA R+A+  +    
Sbjct: 121 AVAKGNYATDEFVPIQQAKLVARAIGAKKYMECSALTGEGVDDVFEAATRAALLVRKSGK 180

Query: 203 -----SCC 205
                +CC
Sbjct: 181 EEPGANCC 188

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). Length = 190

>gnl|CDD|206707 cd04135, Tc10, Rho GTPase TC10 (Tc10)

 Score =  185 bits (471), Expect = 4e-60
 Identities = 83/170 (48%), Positives = 120/170 (70%)

Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQED 83
           LK   VGDG VGKTCLL+++  + FP +YVPTVFD+Y  ++TV  K Y + L+DTAGQED
Sbjct: 1   LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQED 60

Query: 84  YERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSEN 143
           Y+RLRP+SYP TD FL+CFS+ + +S++N+  +W PELK + P VP +L+GT+ DLR + 
Sbjct: 61  YDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLIGTQIDLRDDP 120

Query: 144 KTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAV 193
           KT+ +    +   ++  QG+K+ ++I A  Y+ECSA   +GL  VF  A+
Sbjct: 121 KTLARLNDMKEKPITVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAI 170

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interactions with CFTR-associated ligand (CAL). The GTP-bound form of TC10 directs the trafficking of CFTR from the juxtanuclear region to the secretory pathway toward the plasma membrane, away from CAL-mediated DFTR degradation in the lysosome. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206706 cd04134, Rho3, Ras homology family 3 (Rho3) of small guanosine triphosphatases (GTPases)

 Score =  178 bits (453), Expect = 3e-57
 Identities = 78/172 (45%), Positives = 105/172 (61%), Gaps = 4/172 (2%)

Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
           KV  +GDG  GKT LL   T   FP  Y PTVF+NY   I VD    +++LWDTAGQE++
Sbjct: 2   KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYIHDIFVDGLAVELSLWDTAGQEEF 61

Query: 85  ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENK 144
           +RLR +SY +T   +LCFS+ +  S EN+ SKW  E++HHCP V ++LV  K DLR    
Sbjct: 62  DRLRSLSYADTHVIMLCFSVDNPDSLENVESKWLAEIRHHCPGVKLVLVALKCDLREPRN 121

Query: 145 TIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSA 196
             D+        +S  +G  + ++I A  YLECSAKLN G+++ F  A R A
Sbjct: 122 ERDRGT----HTISYEEGLAVAKRINACRYLECSAKLNRGVNEAFTEAARVA 169

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 185

>gnl|CDD|206703 cd04131, Rnd, Rho family GTPase subfamily Rnd includes Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8

 Score =  164 bits (418), Expect = 6e-52
 Identities = 69/174 (39%), Positives = 108/174 (62%), Gaps = 1/174 (0%)

Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
           K+  VGD   GKT LL    ++ FP +YVPTVF+NY  +  VD +  +++LWDT+G   Y
Sbjct: 3   KIVLVGDSQCGKTALLQVFAKDSFPENYVPTVFENYTASFEVDKQRIELSLWDTSGSPYY 62

Query: 85  ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENK 144
           + +RP+SYP++D  L+CF I    + +++L KW  E++  CP  P++LVG K+DLR++  
Sbjct: 63  DNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEVREFCPNTPVLLVGCKSDLRTDLS 122

Query: 145 TIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNE-GLDQVFIAAVRSAV 197
           T+ +        VS  QG+ + ++I AA Y+ECSAK +E  +  VF  A  + +
Sbjct: 123 TLTELSNKRQIPVSHEQGRNLAKQIGAAAYVECSAKTSENSVRDVFEMATLACL 176

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 176

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score =  153 bits (390), Expect = 8e-48
 Identities = 59/173 (34%), Positives = 88/173 (50%), Gaps = 16/173 (9%)

Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVF-DNYPDTITVDNKTYDVTLWDTAGQE 82
            K+  +GD  VGKT LL+   +NKF  +Y  T+  D    TI VD K   + +WDTAGQE
Sbjct: 1   FKIVLIGDSGVGKTSLLLRFVDNKFSENYKSTIGVDFKSKTIEVDGKKVKLQIWDTAGQE 60

Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCP-KVPIILVGTKADLRS 141
            +  +    Y      +L + + +  S+EN+  KW  ELK + P  +PIILVG K+DL  
Sbjct: 61  RFRSITSSYYRGAHGAILVYDVTNRESFENL-DKWLNELKEYAPPNIPIILVGNKSDLED 119

Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
           E +            VST + ++  ++     + E SAK  E +D+ F +  R
Sbjct: 120 ERQ------------VSTEEAQQFAKENG-LLFFETSAKTGENVDEAFESLAR 159

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|206735 cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases

 Score =  142 bits (359), Expect = 4e-43
 Identities = 68/176 (38%), Positives = 106/176 (60%), Gaps = 1/176 (0%)

Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
           K+  VGD   GKT LL    ++ FP +YVPTVF+NY  +  +D +  +++LWDT+G   Y
Sbjct: 7   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY 66

Query: 85  ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENK 144
           + +RP+SYP++D  L+CF I    + +++L KW  E++  CP   ++LVG K+DLR++  
Sbjct: 67  DNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVS 126

Query: 145 TIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNE-GLDQVFIAAVRSAVKK 199
           T+ +        VS  QG  M ++I AA Y+ECSA  +E  +  +F  A  + V K
Sbjct: 127 TLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVNK 182

Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight junction formation. Rnd3/RhoE is underexpressed in prostate cancer cells both in vitro and in vivo; re-expression of Rnd3/RhoE suppresses cell cycle progression and increases apoptosis, suggesting it may play a role in tumor suppression. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 182

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score =  134 bits (339), Expect = 1e-39
 Identities = 55/185 (29%), Positives = 88/185 (47%), Gaps = 6/185 (3%)

Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYP-DTITVDNKTYDVTLWDTAGQE 82
            K+  +GDG VGKT LL     ++FP  Y PT+ +  P  TI    +   + LWDTAGQE
Sbjct: 6   FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQE 65

Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCP-KVPIILVGTKADL-- 139
           +Y  LRP  Y   +  L+ +      S + +  +W  EL+   P  VPI+LVG K DL  
Sbjct: 66  EYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFD 125

Query: 140 RSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKL--NEGLDQVFIAAVRSAV 197
              +      +     ++     K +  ++     LE SAK      ++++F   +R  +
Sbjct: 126 EQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKELLRKLL 185

Query: 198 KKQDK 202
           ++ +K
Sbjct: 186 EEIEK 190

Length = 219

>gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases)

 Score =  130 bits (329), Expect = 1e-38
 Identities = 60/174 (34%), Positives = 89/174 (51%), Gaps = 16/174 (9%)

Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
           K+  +G G VGK+ L I     +F  +Y PT+ D+Y   I VD +TY + + DTAGQE++
Sbjct: 1   KLVVLGAGGVGKSALTIRFVSGEFVEEYDPTIEDSYRKQIVVDGETYTLDILDTAGQEEF 60

Query: 85  ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELK--HHCPKVPIILVGTKADLRSE 142
             +R     N D F+L +SI S  S+E I      ++        VPI+LVG K DL +E
Sbjct: 61  SAMRDQYIRNGDGFILVYSITSRESFEEI-KNIREQILRVKDKEDVPIVLVGNKCDLENE 119

Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSA 196
            +            VST +G+ +  +     +LE SAK N  +D++F   VR  
Sbjct: 120 RQ------------VSTEEGEALAEEWGCP-FLETSAKTNINIDELFNTLVREI 160

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160

>gnl|CDD|206736 cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases

 Score =  131 bits (331), Expect = 2e-38
 Identities = 60/180 (33%), Positives = 106/180 (58%), Gaps = 1/180 (0%)

Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
           K+  VGD   GKT LL    ++ +P  YVPTVF+NY  +  +D    ++ +WDT+G   Y
Sbjct: 3   KIVVVGDTQCGKTALLHVFAKDNYPESYVPTVFENYTASFEIDKHRIELNMWDTSGSSYY 62

Query: 85  ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENK 144
           + +RP++YP++D  L+CF I    + +++L KW  E +  CP   ++LVG K D+R++  
Sbjct: 63  DNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKLVLVGCKLDMRTDLS 122

Query: 145 TIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNE-GLDQVFIAAVRSAVKKQDKS 203
           T+ +     +  V+  QG  + R++ A  Y+ECS++++E  +  VF     ++V+++  S
Sbjct: 123 TLRELSKQRLIPVTHEQGSLLARQLGAVAYVECSSRMSENSVRDVFHVTTLASVRREHPS 182

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in spermatocytes and early spermatids, with male-germ-cell Rac GTPase-activating protein (MgcRacGAP), where it localizes to the Golgi-derived pro-acrosomal vesicle. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 221

>gnl|CDD|214541 smart00173, RAS, Ras subfamily of RAS small GTPases

 Score =  124 bits (314), Expect = 2e-36
 Identities = 61/177 (34%), Positives = 88/177 (49%), Gaps = 16/177 (9%)

Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
           K+  +G G VGK+ L I   +  F  DY PT+ D+Y   I +D +   + + DTAGQE++
Sbjct: 2   KLVVLGSGGVGKSALTIQFIQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEF 61

Query: 85  ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKH--HCPKVPIILVGTKADLRSE 142
             +R       + FLL +SI    S+E I  K+  ++        VPI+LVG K DL SE
Sbjct: 62  SAMRDQYMRTGEGFLLVYSITDRQSFEEI-KKFREQILRVKDRDDVPIVLVGNKCDLESE 120

Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKK 199
                         VST +GK++ R+     +LE SAK    +D+ F   VR   KK
Sbjct: 121 RV------------VSTEEGKELARQWGCP-FLETSAKERVNVDEAFYDLVREIRKK 164

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades. Length = 164

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score =  124 bits (313), Expect = 3e-36
 Identities = 56/178 (31%), Positives = 83/178 (46%), Gaps = 16/178 (8%)

Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
            K+  +GD  VGK+ LL   T+ KF   Y  T+  D    TI VD K   + +WDTAGQE
Sbjct: 1   FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQE 60

Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRS 141
            +  +    Y      LL + I +  S+EN L  W  EL+ +  P V I+LVG K+DL  
Sbjct: 61  RFRSITSSYYRGAVGALLVYDITNRESFEN-LENWLKELREYASPNVVIMLVGNKSDLEE 119

Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKK 199
           + +            VS  + +    +     + E SAK N  +++ F    R  +K+
Sbjct: 120 QRQ------------VSREEAEAFAEEHG-LPFFETSAKTNTNVEEAFEELAREILKR 164

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|197466 smart00010, small_GTPase, Small GTPase of the Ras superfamily; ill-defined subfamily

 Score =  124 bits (313), Expect = 4e-36
 Identities = 58/177 (32%), Positives = 88/177 (49%), Gaps = 16/177 (9%)

Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
           K+  +G G VGK+ L I   +  F  +Y PT+ D+Y   I +D +   + + DTAGQE++
Sbjct: 4   KLVVLGGGGVGKSALTIQFVQGHFVDEYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEF 63

Query: 85  ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKH--HCPKVPIILVGTKADLRSE 142
             +R       + FLL +SI    S+E I +K+  ++        VPI+LVG K DL +E
Sbjct: 64  SAMRDQYMRTGEGFLLVYSITDRQSFEEI-AKFREQILRVKDRDDVPIVLVGNKCDLENE 122

Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKK 199
                         VST +GK++ R+     +LE SAK    +D+ F   VR   K 
Sbjct: 123 RV------------VSTEEGKELARQWGCP-FLETSAKERINVDEAFYDLVREIRKS 166

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. Length = 166

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score =  120 bits (302), Expect = 1e-34
 Identities = 59/161 (36%), Positives = 75/161 (46%), Gaps = 9/161 (5%)

Query: 25  KVTTVGDGMVGKTCLLITHTENK-FPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQE 82
           K+  VGD  VGK+ LL     NK   T+Y P    NY    I  D KTY   L DTAGQE
Sbjct: 3   KIVIVGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQE 62

Query: 83  DYERLRPMSYPNTDCFLLCFSIGST-SSYENILSKWYPELKHHCP-KVPIILVGTKADLR 140
           DY+ +R + Y   +  L  F I       E IL K   E+ HH    VPIILVG K DLR
Sbjct: 63  DYDAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESGVPIILVGNKIDLR 122

Query: 141 SEN-KTIDKKKAAEV---DLVSTSQGKKMRRKIKAAEYLEC 177
               KT      A++    ++  S  +  +    A + +E 
Sbjct: 123 DAKLKTHVAFLFAKLNGEPIIPLS-AETGKNIDSAFKIVEA 162

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|206737 cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases

 Score =  120 bits (303), Expect = 4e-34
 Identities = 61/176 (34%), Positives = 99/176 (56%), Gaps = 1/176 (0%)

Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
           K+  VGD   GKT +L    ++ +P  YVPTVF+NY   +  + +  +++LWDT+G   Y
Sbjct: 15  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYY 74

Query: 85  ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENK 144
           + +RP+ Y ++D  LLCF I     +++ L KW  E+  +CP   I+L+G K DLR++  
Sbjct: 75  DNVRPLCYSDSDAVLLCFDISRPEIFDSALKKWRAEILDYCPSTRILLIGCKTDLRTDLS 134

Query: 145 TIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNE-GLDQVFIAAVRSAVKK 199
           T+ +    +   +S  QG  M +++ A  YLECSA  +E  +  +F  A    + K
Sbjct: 135 TLMELSNQKQAPISYEQGCAMAKQLGAEAYLECSAFTSEKSIHSIFRTASLLCINK 190

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 232

>gnl|CDD|133275 cd01873, RhoBTB, RhoBTB protein is an atypical member of the Rho family of small GTPases

 Score =  107 bits (268), Expect = 3e-29
 Identities = 68/196 (34%), Positives = 98/196 (50%), Gaps = 26/196 (13%)

Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDY------VPTVF--DNYPDTITVDNKTYDVT- 74
           +K   VGD  VGKT L+     NK  T Y      VPTV+  D Y     V  ++ DV  
Sbjct: 3   IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVD 62

Query: 75  -------LWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPK 127
                  LWDT G  D+++ R  +Y  +D  LLCFSI S +S  N+ + WYPE++H CP+
Sbjct: 63  GVSVSLRLWDTFG--DHDKDRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPR 120

Query: 128 VPIILVGTKADLRSEN-------KTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAK 180
           VP+ILVG K DLR  +       +    +     D++    G+ + +++    Y E S  
Sbjct: 121 VPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPPETGRAVAKELGIP-YYETSVV 179

Query: 181 LNEGLDQVFIAAVRSA 196
              G+  VF  A+R+A
Sbjct: 180 TQFGVKDVFDNAIRAA 195

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. Length = 195

>gnl|CDD|133338 cd04138, H_N_K_Ras_like, Ras GTPase family containing H-Ras,N-Ras and K-Ras4A/4B

 Score =  105 bits (265), Expect = 4e-29
 Identities = 57/173 (32%), Positives = 88/173 (50%), Gaps = 17/173 (9%)

Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQED 83
            K+  VG G VGK+ L I   +N F  +Y PT+ D+Y   + +D +T  + + DTAGQE+
Sbjct: 2   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEE 61

Query: 84  YERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKH--HCPKVPIILVGTKADLRS 141
           Y  +R       + FL  F+I S  S+E+I   +  ++K       VP++LVG K DL +
Sbjct: 62  YSAMRDQYMRTGEGFLCVFAINSRKSFEDI-HTYREQIKRVKDSDDVPMVLVGNKCDLAA 120

Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
                          VST QG+ + +      Y+E SAK  +G+++ F   VR
Sbjct: 121 RT-------------VSTRQGQDLAKSY-GIPYIETSAKTRQGVEEAFYTLVR 159

H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. Others are proposed to play negative regulatory roles in oncogenesis, including RASSF and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|133345 cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3

 Score =  100 bits (250), Expect = 7e-27
 Identities = 56/173 (32%), Positives = 90/173 (52%), Gaps = 16/173 (9%)

Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQED 83
            K+  VG G VGK+ L I   ++ F TDY PT+ D+Y     +D +   + + DTAGQE+
Sbjct: 3   YKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWARLDILDTAGQEE 62

Query: 84  YERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKH--HCPKVPIILVGTKADLRS 141
           +  +R       + FLL FS+    S+E +  K++ ++       + P+ILVG KADL  
Sbjct: 63  FSAMREQYMRTGEGFLLVFSVTDRGSFEEV-DKFHTQILRVKDRDEFPMILVGNKADLEH 121

Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
           + +            VS  +G+++ R++K   Y+E SAK    +D+ F   VR
Sbjct: 122 QRQ------------VSREEGQELARQLKIP-YIETSAKDRVNVDKAFHDLVR 161

The M-Ras/R-Ras-like subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206710 cd04139, RalA_RalB, Ral (Ras-like) family containing highly homologous RalA and RalB

 Score = 97.9 bits (244), Expect = 5e-26
 Identities = 53/171 (30%), Positives = 76/171 (44%), Gaps = 14/171 (8%)

Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
           KV  VG G VGK+ L +    ++F  DY PT  D+Y   + +D +   + + DTAGQEDY
Sbjct: 2   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQLNILDTAGQEDY 61

Query: 85  ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKH-HCPKVPIILVGTKADLRSEN 143
             +R   + + + FLL FSI    S+  +       L+      VP++LVG K DL    
Sbjct: 62  AAIRDNYFRSGEGFLLVFSITDMESFTALAEFREQILRVKEDDNVPLLLVGNKCDL---E 118

Query: 144 KTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
                      +L                 Y+E SAK    +D+VF   VR
Sbjct: 119 DKRQVSVEEAANLAEQW----------GVNYVETSAKTRANVDKVFFDLVR 159

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (>80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exocyst and for localizing the exocyst to the leading edge of migrating cells. In human cancer cells, RalA is required to support anchorage-independent proliferation and RalB is required to suppress apoptosis. RalA has been shown to localize to the plasma membrane while RalB is localized to the intracellular vesicles. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206709 cd04137, RheB, Ras Homolog Enriched in Brain (RheB) is a small GTPase

 Score = 98.1 bits (245), Expect = 7e-26
 Identities = 56/189 (29%), Positives = 84/189 (44%), Gaps = 21/189 (11%)

Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
           K+  +G   VGK+ L +   E  F   Y PT+ + +   IT   + Y + + DTAGQ++Y
Sbjct: 3   KIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIITYKGQEYHLEIVDTAGQDEY 62

Query: 85  ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHH-CPKVPIILVGTKADLRSEN 143
             L          ++L +S+ S  S+E +   +   L       VPI+LVG K+DL  E 
Sbjct: 63  SILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHMER 122

Query: 144 KTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVF------IAAVR-SA 196
           +            VS  +GKK+     AA +LE SAK NE +++ F      I  V    
Sbjct: 123 Q------------VSAEEGKKLAESWGAA-FLESSAKENENVEEAFELLIEEIEKVENPL 169

Query: 197 VKKQDKSCC 205
              Q   C 
Sbjct: 170 PPGQKSKCS 178

Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that leads to cell growth and cell-cycle progression. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 180

>gnl|CDD|206655 cd01862, Rab7, Rab GTPase family 7 (Rab7)

 Score = 96.2 bits (240), Expect = 3e-25
 Identities = 55/184 (29%), Positives = 87/184 (47%), Gaps = 19/184 (10%)

Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
           LKV  +GD  VGKT L+  +   KF   Y  T+  D     +TVD++   + +WDTAGQE
Sbjct: 1   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDRLVTLQIWDTAGQE 60

Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPE-LKHHCPK----VPIILVGTKA 137
            ++ L    Y   DC +L + + +  S+E+ L  W  E L    P+     P +++G K 
Sbjct: 61  RFQSLGVAFYRGADCCVLVYDVTNPKSFES-LDSWRDEFLIQASPRDPENFPFVVLGNKI 119

Query: 138 DLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV 197
           DL  + +            VST + ++  +      Y E SAK    +DQ F    R A+
Sbjct: 120 DLEEKRQ------------VSTKKAQQWCKSKGNIPYFETSAKEAINVDQAFETIARLAL 167

Query: 198 KKQD 201
           +++ 
Sbjct: 168 EQEK 171

Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 172

>gnl|CDD|206708 cd04136, Rap_like, Rap-like family consists of Rap1, Rap2 and RSR1

 Score = 96.1 bits (239), Expect = 3e-25
 Identities = 53/172 (30%), Positives = 83/172 (48%), Gaps = 15/172 (8%)

Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
           K+  +G G VGK+ L +   +  F   Y PT+ D+Y   I VD +   + + DTAG E +
Sbjct: 3   KLVVLGSGGVGKSALTVQFVQGIFVDKYDPTIEDSYRKQIEVDCQQCMLEILDTAGTEQF 62

Query: 85  ERLRPMSYPNTDCFLLCFSIGSTSSYENI--LSKWYPELKHHCPKVPIILVGTKADLRSE 142
             +R +   N   F L +SI +  S+ ++  L +    +K     VP+ILVG K DL  E
Sbjct: 63  TAMRDLYIKNGQGFALVYSITAQQSFNDLQDLREQILRVKDT-EDVPMILVGNKCDLEDE 121

Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
                        +VS  +G+ + R+     +LE SAK    +D++F   VR
Sbjct: 122 R------------VVSKEEGQNLARQWGNCPFLETSAKSKINVDEIFYDLVR 161

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap2 is involved in multiple functions, including activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton and activation of the Wnt/beta-catenin signaling pathway in embryonic Xenopus. A number of effector proteins for Rap2 have been identified, including isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK), and the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. RSR1 is the fungal homolog of Rap1 and Rap2. In budding yeasts, it is involved in selecting a site for bud growth, which directs the establishment of cell polarization. The Rho family GTPase Cdc42 and its GEF, Cdc24, then establish an axis of polarized growth. It is believed that Cdc42 interacts directly with RSR1 in vivo. In filamentous fungi such as Ashbya gossypii, RSR1 is a key regulator of polar growth in the hypha. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133344 cd04144, Ras2, Rat sarcoma (Ras) family 2 of small guanosine triphosphatases (GTPases)

 Score = 95.3 bits (237), Expect = 1e-24
 Identities = 60/180 (33%), Positives = 94/180 (52%), Gaps = 19/180 (10%)

Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
           K+  +GDG VGKT L I    N F   Y PT+ D+Y   + VD +   + + DTAGQE+Y
Sbjct: 1   KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEY 60

Query: 85  ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPEL---KHHCP-KVPIILVGTKADLR 140
             LR       + F+L +SI S S++E +  ++  ++   K      VPI++VG K D  
Sbjct: 61  TALRDQWIREGEGFILVYSITSRSTFERV-ERFREQIQRVKDESAADVPIMIVGNKCDKV 119

Query: 141 SENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQ 200
            E +            VST +G  + R++   E++E SAK N  +++ F   VR A+++Q
Sbjct: 120 YERE------------VSTEEGAALARRL-GCEFIEASAKTNVNVERAFYTLVR-ALRQQ 165

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 190

>gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18)

 Score = 93.5 bits (233), Expect = 2e-24
 Identities = 55/169 (32%), Positives = 80/169 (47%), Gaps = 18/169 (10%)

Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
           LK+  +GD  VGK+ LL+  T++ F  D   T+  D    T+TVD K   + +WDTAGQE
Sbjct: 1   LKILLIGDSGVGKSSLLLRFTDDTFDEDLSSTIGVDFKVKTVTVDGKKVKLAIWDTAGQE 60

Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC--PKVPIILVGTKADLR 140
            +  L    Y      +L + +    +++N L  W  EL  +   P    +LVG K    
Sbjct: 61  RFRTLTSSYYRGAQGVILVYDVTRRDTFDN-LDTWLNELDTYSTNPDAVKMLVGNK---- 115

Query: 141 SENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVF 189
                IDK    E   V+  +G+K  RK     ++E SAK   G+ Q F
Sbjct: 116 -----IDK----ENREVTREEGQKFARK-HNMLFIETSAKTRIGVQQAF 154

Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21)

 Score = 93.4 bits (233), Expect = 2e-24
 Identities = 52/169 (30%), Positives = 90/169 (53%), Gaps = 16/169 (9%)

Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDN-YPDTITVDNKTYDVTLWDTAGQED 83
           KV  +G+G VGKT L++ + ENKF   +  T   + +  T+ +  K  D+ +WDTAGQE 
Sbjct: 2   KVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQER 61

Query: 84  YERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSE 142
           Y  L P+ Y + D  +L + I    S++ +  KW  ELK      + +++VG K DL  +
Sbjct: 62  YHALGPIYYRDADGAILVYDITDADSFQKV-KKWIKELKQMRGNNISLVIVGNKIDLERQ 120

Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIA 191
                         VS S+ ++  + +  A++ E SAK  +G++++F++
Sbjct: 121 RV------------VSKSEAEEYAKSVG-AKHFETSAKTGKGIEELFLS 156

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 92.9 bits (231), Expect = 4e-24
 Identities = 42/169 (24%), Positives = 60/169 (35%), Gaps = 23/169 (13%)

Query: 29  VGDGMVGKTCLLITHTENKF---PTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYE 85
           VG G VGK+ LL      +          T  D       +D     + L DT G +++ 
Sbjct: 3   VGRGGVGKSSLLNALLGGEVGEVSDVPGTTR-DPDVYVKELDKGKVKLVLVDTPGLDEFG 61

Query: 86  RLRP-----MSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLR 140
            L       +     D  LL        S E+   K     +     +PIILVG K DL 
Sbjct: 62  GLGREELARLLLRGADLILLVVDSTDRESEEDA--KLLILRRLRKEGIPIILVGNKIDLL 119

Query: 141 SENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVF 189
            E +  +  +             +   KI      E SAK  EG+D++F
Sbjct: 120 EEREVEELLRL------------EELAKILGVPVFEVSAKTGEGVDELF 156

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|133377 cd04177, RSR1, RSR1/Bud1p family GTPase

 Score = 92.9 bits (231), Expect = 5e-24
 Identities = 51/176 (28%), Positives = 84/176 (47%), Gaps = 23/176 (13%)

Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
           K+  +G G VGK+ L +   +N F   Y PT+ D+Y   + +D +  D+ + DTAG E +
Sbjct: 3   KIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQF 62

Query: 85  ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPK------VPIILVGTKAD 138
             +R +   +   FLL +S+ S +S   +      EL+    +      VP++LVG KAD
Sbjct: 63  TAMRELYIKSGQGFLLVYSVTSEASLNELG-----ELREQVLRIKDSDNVPMVLVGNKAD 117

Query: 139 LRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
           L  + +            VS   G  + ++     + E SA+    +D+VFI  VR
Sbjct: 118 LEDDRQ------------VSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLVR 161

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 168

>gnl|CDD|240385 PTZ00369, PTZ00369, Ras-like protein; Provisional

 Score = 90.7 bits (225), Expect = 5e-23
 Identities = 63/179 (35%), Positives = 91/179 (50%), Gaps = 15/179 (8%)

Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
           K+  VG G VGK+ L I   +N F  +Y PT+ D+Y     +D +T  + + DTAGQE+Y
Sbjct: 7   KLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEY 66

Query: 85  ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELK-HHCPKVPIILVGTKADLRSEN 143
             +R         FL  +SI S SS+E I S     L+     +VP+ILVG K DL SE 
Sbjct: 67  SAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSER 126

Query: 144 KTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQDK 202
           +            VST +G+++ +      +LE SAK    +D+ F   VR  ++K  K
Sbjct: 127 Q------------VSTGEGQELAKSF-GIPFLETSAKQRVNVDEAFYELVRE-IRKYLK 171

Length = 189

>gnl|CDD|133375 cd04175, Rap1, Rap1 family GTPase consists of Rap1a and Rap1b isoforms

 Score = 89.5 bits (222), Expect = 1e-22
 Identities = 52/172 (30%), Positives = 83/172 (48%), Gaps = 16/172 (9%)

Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
           K+  +G G VGK+ L +   +  F   Y PT+ D+Y   + VD +   + + DTAG E +
Sbjct: 3   KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQF 62

Query: 85  ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKH--HCPKVPIILVGTKADLRSE 142
             +R +   N   F+L +SI + S++ N L     ++        VP+ILVG K DL  E
Sbjct: 63  TAMRDLYMKNGQGFVLVYSITAQSTF-NDLQDLREQILRVKDTEDVPMILVGNKCDLEDE 121

Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
                        +V   QG+ + R+   A +LE SAK    ++++F   VR
Sbjct: 122 R------------VVGKEQGQNLARQWGCA-FLETSAKAKINVNEIFYDLVR 160

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines; interestingly, in the SCCs, the active GTP-bound form localized to the nucleus, while the inactive GDP-bound form localized to the cytoplasm. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap1a, which is stimulated by T-cell receptor (TCR) activation, is a positive regulator of T cells by directing integrin activation and augmenting lymphocyte responses. In murine hippocampal neurons, Rap1b determines which neurite will become the axon and directs the recruitment of Cdc42, which is required for formation of dendrites and axons. In murine platelets, Rap1b is required for normal homeostasis in vivo and is involved in integrin activation. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13)

 Score = 88.9 bits (221), Expect = 1e-22
 Identities = 55/181 (30%), Positives = 87/181 (48%), Gaps = 24/181 (13%)

Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQED 83
           K+  +GD  VGK+CLL+  +E+ F   ++ T+  D    TI +D K   + +WDTAGQE 
Sbjct: 5   KLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQER 64

Query: 84  YERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSE 142
           +  +    Y      +L + I    S+ENI   W   +  H    V  +LVG K D+   
Sbjct: 65  FRTITTSYYRGAMGIILVYDITDEKSFENI-KNWMRNIDEHASEDVERMLVGNKCDM--- 120

Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEY----LECSAKLNEGLDQVFIAAVRSAVK 198
               ++K+      VS  +G+ +     A EY    LE SAK N  +++ F+   +  +K
Sbjct: 121 ----EEKRV-----VSKEEGEAL-----AREYGIKFLETSAKANINVEEAFLTLAKDILK 166

Query: 199 K 199
           K
Sbjct: 167 K 167

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167

>gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25

 Score = 88.8 bits (221), Expect = 1e-22
 Identities = 54/169 (31%), Positives = 78/169 (46%), Gaps = 20/169 (11%)

Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTV---FDNYPDTITVDNKTYDVTLWDTAGQ 81
           K+  +GD  VGK+ LL   T N+F  D   T+   F     TI +D KT    +WDTAGQ
Sbjct: 5   KIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFAT--RTIQIDGKTIKAQIWDTAGQ 62

Query: 82  EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPK-VPIILVGTKADLR 140
           E Y  +    Y      LL + I   S++EN+  +W  EL+ H    + I+LVG K+DLR
Sbjct: 63  ERYRAITSAYYRGAVGALLVYDITKKSTFENV-ERWLKELRDHADSNIVIMLVGNKSDLR 121

Query: 141 SENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVF 189
                           V T + K    K   + ++E SA     +++ F
Sbjct: 122 HLRA------------VPTEEAKAFAEKNGLS-FIETSALDGTNVEEAF 157

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206697 cd04116, Rab9, Rab GTPase family 9 (Rab9)

 Score = 86.5 bits (214), Expect = 2e-21
 Identities = 59/181 (32%), Positives = 84/181 (46%), Gaps = 24/181 (13%)

Query: 22  KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV---FDNYPDTITVDNKTYDVTLWDT 78
             LKV  +GDG VGK+ L+  +  NKF T    T+   F N    + VD     + +WDT
Sbjct: 4   SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLN--KDLEVDGHFVTLQIWDT 61

Query: 79  AGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-----PKVPIILV 133
           AGQE +  LR   Y  +DC LL FS+  + S++N LS W  E  ++         P +++
Sbjct: 62  AGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQN-LSNWKKEFIYYADVKEPESFPFVIL 120

Query: 134 GTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAV 193
           G K D       I +++      VST + +   R      Y E SAK    +   F  AV
Sbjct: 121 GNKID-------IPERQ------VSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAV 167

Query: 194 R 194
           R
Sbjct: 168 R 168

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6)

 Score = 85.0 bits (211), Expect = 4e-21
 Identities = 53/168 (31%), Positives = 85/168 (50%), Gaps = 18/168 (10%)

Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQED 83
           K+  +GD  VGKT ++     + F   Y  T+  D    T+ VD+KT  + LWDTAGQE 
Sbjct: 2   KLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYVDDKTVRLQLWDTAGQER 61

Query: 84  YERLRPMSY-PNTDCFLLCFSIGSTSSYENILSKWYPELKH-HCPKVPIILVGTKADLRS 141
           +  L P SY  ++   ++ + I +  S++N   KW  +++      V I+LVG K DL  
Sbjct: 62  FRSLIP-SYIRDSSVAVVVYDITNRQSFDNT-DKWIDDVRDERGNDVIIVLVGNKTDLSD 119

Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVF 189
           + +            VST +G+K  ++   A ++E SAK    + Q+F
Sbjct: 120 KRQ------------VSTEEGEKKAKENN-AMFIETSAKAGHNVKQLF 154

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion

 Score = 84.9 bits (211), Expect = 6e-21
 Identities = 51/171 (29%), Positives = 83/171 (48%), Gaps = 20/171 (11%)

Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTV---FDNYPDTITVDNKTYDVTLWDTAGQ 81
           K+  +GD  VGK+ +++   +N+F  +   T+   F     T+ +D+ T    +WDTAGQ
Sbjct: 3   KLVLLGDSSVGKSSIVLRFVKNEFSENQESTIGAAFLTQ--TVNLDDTTVKFEIWDTAGQ 60

Query: 82  EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLR 140
           E Y  L PM Y      ++ + I S  S+E     W  EL+ H  P + I L G KADL 
Sbjct: 61  ERYRSLAPMYYRGAAAAIVVYDITSEESFEK-AKSWVKELQEHGPPNIVIALAGNKADLE 119

Query: 141 SENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIA 191
           S+ +            VST + ++   +     ++E SAK  E ++++F  
Sbjct: 120 SKRQ------------VSTEEAQEYADENGLL-FMETSAKTGENVNELFTE 157

The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|133376 cd04176, Rap2, Rap2 family GTPase consists of Rap2a, Rap2b, and Rap2c

 Score = 84.1 bits (208), Expect = 1e-20
 Identities = 52/175 (29%), Positives = 85/175 (48%), Gaps = 22/175 (12%)

Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
           KV  +G G VGK+ L +      F   Y PT+ D Y   I VD+    + + DTAG E +
Sbjct: 3   KVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQF 62

Query: 85  ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELK-HHCPKVPIILVGTKADLRSEN 143
             +R +   N   F++ +S+ +  ++++I       ++     KVPIILVG K DL SE 
Sbjct: 63  ASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESER 122

Query: 144 KTIDKKKAAEVDLVSTSQGKKMRRKIKAAE----YLECSAKLNEGLDQVFIAAVR 194
           +            VS+++G+ +     A E    ++E SAK    ++++F   VR
Sbjct: 123 E------------VSSAEGRAL-----AEEWGCPFMETSAKSKTMVNELFAEIVR 160

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, including the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|133324 cd04124, RabL2, Rab GTPase-like family 2 (Rab-like2)

 Score = 83.4 bits (206), Expect = 2e-20
 Identities = 49/162 (30%), Positives = 73/162 (45%), Gaps = 18/162 (11%)

Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTI-----TVDNKTYDVTLWDT 78
           +K+  +GD  VGK+ L+    E      Y P     Y  T+       + KT  V  WDT
Sbjct: 1   VKIILLGDSAVGKSKLV----ERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDT 56

Query: 79  AGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTK-- 136
           AGQE ++ +    Y      +L F +    +Y+N LSKWY EL+ + P++P I+V  K  
Sbjct: 57  AGQERFQTMHASYYHKAHACILVFDVTRKITYKN-LSKWYEELREYRPEIPCIVVANKID 115

Query: 137 ADLRSENKTID--KKKAAEVDLVSTSQG----KKMRRKIKAA 172
            D     K  +  +K    +  VS + G    K  +  IK A
Sbjct: 116 LDPSVTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKLA 157

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share > 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 161

>gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like)

 Score = 83.6 bits (207), Expect = 2e-20
 Identities = 49/182 (26%), Positives = 85/182 (46%), Gaps = 21/182 (11%)

Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDT-ITVDNKTYDVTLWDTAGQE 82
           +KV ++G+  VGK+C++  + E +F + Y+PT+  +Y    ++V NK   V  +D +G  
Sbjct: 1   IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHP 60

Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC------PKVPIILVGTK 136
           +Y  +R   Y +T   LL + +    S+E  L  W  E+K           + +++   K
Sbjct: 61  EYLEVRNEFYKDTQGVLLVYDVTDRQSFEA-LDSWLKEMKQEGGPHGNMENIVVVVCANK 119

Query: 137 ADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSA 196
            DL        K +A     VS  +G+      K  +Y E SA   EG++++F     S 
Sbjct: 120 IDL-------TKHRA-----VSEDEGRLWAES-KGFKYFETSACTGEGVNEMFQTLFSSI 166

Query: 197 VK 198
           V 
Sbjct: 167 VD 168

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168

>gnl|CDD|178620 PLN03071, PLN03071, GTP-binding nuclear protein Ran; Provisional

 Score = 83.6 bits (207), Expect = 5e-20
 Identities = 51/173 (29%), Positives = 81/173 (46%), Gaps = 17/173 (9%)

Query: 23  ALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQ 81
           + K+  VGDG  GKT  +  H   +F   Y PT+  + +P     +        WDTAGQ
Sbjct: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72

Query: 82  EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
           E +  LR   Y +  C ++ F + +  +Y+N+   W+ +L   C  +PI+L G K D+++
Sbjct: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131

Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
                 + KA +V            RK K  +Y E SAK N   ++ F+   R
Sbjct: 132 R-----QVKAKQV---------TFHRK-KNLQYYEISAKSNYNFEKPFLYLAR 169

Length = 219

>gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2)

 Score = 80.9 bits (200), Expect = 2e-19
 Identities = 48/177 (27%), Positives = 81/177 (45%), Gaps = 16/177 (9%)

Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQED 83
           K   +GD  VGK+CLL+  T+ +F   +  T+   +    IT+D K   + +WDTAGQE 
Sbjct: 6   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQES 65

Query: 84  YERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSE 142
           +  +    Y      LL + I    ++ + L+ W  + + H    + I+L+G K DL S 
Sbjct: 66  FRSITRSYYRGAAGALLVYDITRRETFNH-LTSWLEDARQHSNSNMTIMLIGNKCDLESR 124

Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKK 199
            +            VS  +G+   R+     ++E SAK    +++ FI   +    K
Sbjct: 125 RE------------VSYEEGEAFARE-HGLIFMETSAKTASNVEEAFINTAKEIYDK 168

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168

>gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39)

 Score = 81.7 bits (202), Expect = 2e-19
 Identities = 50/169 (29%), Positives = 80/169 (47%), Gaps = 18/169 (10%)

Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITV-DNKTYDVTLWDTAGQE 82
           ++  +GD  VGK+ LL   TE +F     PTV  D +   I +       + LWDTAGQE
Sbjct: 4   RLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQE 63

Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHH--CPKVPIILVGTKADLR 140
            +  +    Y N+   LL F I +  S+E++   W  E + H    +   ILVG K DL 
Sbjct: 64  RFRSITRSYYRNSVGVLLVFDITNRESFEHV-HDWLEEARSHIQPHRPVFILVGHKCDLE 122

Query: 141 SENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVF 189
           S+ +    ++ AE      ++   M+       Y+E SA+  + +++ F
Sbjct: 123 SQRQV--TREEAE----KLAKDLGMK-------YIETSARTGDNVEEAF 158

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211

>gnl|CDD|240284 PTZ00132, PTZ00132, GTP-binding nuclear protein Ran; Provisional

 Score = 82.0 bits (203), Expect = 2e-19
 Identities = 50/160 (31%), Positives = 79/160 (49%), Gaps = 19/160 (11%)

Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQED 83
           K+  VGDG VGKT  +  H   +F   Y+PT+  + +P     +       +WDTAGQE 
Sbjct: 11  KLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEK 70

Query: 84  YERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSEN 143
           +  LR   Y    C ++ F + S  +Y+N+   W+ ++   C  +PI+LVG K D++   
Sbjct: 71  FGGLRDGYYIKGQCAIIMFDVTSRITYKNV-PNWHRDIVRVCENIPIVLVGNKVDVK--- 126

Query: 144 KTIDKK-KAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLN 182
              D++ KA ++            RK K  +Y + SAK N
Sbjct: 127 ---DRQVKARQI---------TFHRK-KNLQYYDISAKSN 153

Length = 215

>gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of small GTPases

 Score = 79.7 bits (197), Expect = 5e-19
 Identities = 50/172 (29%), Positives = 78/172 (45%), Gaps = 19/172 (11%)

Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQED 83
           K+  VGDG  GKT  +  H   +F   YV T+  + +P     +       +WDTAGQE 
Sbjct: 2   KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEK 61

Query: 84  YERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSEN 143
           +  LR   Y    C ++ F + S  +Y+N+   W+ +L   C  +PI+L G K D++   
Sbjct: 62  FGGLRDGYYIQGQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIK--- 117

Query: 144 KTIDKKKAAEVDLVSTSQGKKMR-RKIKAAEYLECSAKLNEGLDQVFIAAVR 194
               K K            K++   + K  +Y E SAK N   ++ F+   R
Sbjct: 118 --DRKVKP-----------KQITFHRKKNLQYYEISAKSNYNFEKPFLWLAR 156

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is bound to chromatin and confined to the nucleus. Ran itself is mobile and is actively imported into the nucleus by a mechanism involving NTF-2. Together with the compartmentalization of its regulators, this is thought to produce a relatively high concentration of RanGTP in the nucleus. Length = 166

>gnl|CDD|206712 cd04141, Rit_Rin_Ric, Ras-like protein in all tissues (Rit), Ras-like protein in neurons (Rin) and Ras-related protein which interacts with calmodulin (Ric)

 Score = 79.9 bits (197), Expect = 6e-19
 Identities = 46/179 (25%), Positives = 84/179 (46%), Gaps = 18/179 (10%)

Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
           K+  +G G VGK+ + +    + FP  + PT+ D Y     +DN+   + + DTAGQ ++
Sbjct: 4   KIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKTQARIDNEPALLDILDTAGQAEF 63

Query: 85  ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPEL---KHHCPKVPIILVGTKADLRS 141
             +R       + F++C+S+    S++   +  + EL         +P++LVG K DL  
Sbjct: 64  TAMRDQYMRCGEGFIICYSVTDRHSFQE--ASEFKELITRVRLTEDIPLVLVGNKVDLEQ 121

Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQ 200
           + +            V+T +G+ + R+     + E SA L   +D  F   VR   +K+
Sbjct: 122 QRQ------------VTTEEGRNLAREF-NCPFFETSAALRFYIDDAFHGLVREIRRKE 167

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to signal in parallel with the Ras pathway or stimulate the Ras pathway at some upstream point, and binding of calmodulin to Ric may negatively regulate Ric activity. Length = 172

>gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4)

 Score = 78.2 bits (193), Expect = 2e-18
 Identities = 54/181 (29%), Positives = 78/181 (43%), Gaps = 30/181 (16%)

Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPD-TITVDNKTYDVTLWDTAGQE 82
            K   +G    GK+CLL    ENKF  D   T+   +    + V  K+  + +WDTAGQ 
Sbjct: 1   FKFLIIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKSVKLQIWDTAGQ- 59

Query: 83  DYERLRPMS---YPNTDCFLLCFSIGSTSSYENILSKWYPELKH-HCPKVPIILVGTKAD 138
             ER R ++   Y      LL + I S  S+   L+ W  + +    P + IILVG K D
Sbjct: 60  --ERFRSVTRSYYRGAAGALLVYDITSRESFNA-LTNWLTDARTLASPDIVIILVGNKKD 116

Query: 139 LRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAE----YLECSAKLNEGLDQVFIAAVR 194
           L  +          EV  +  S+         A E    +LE SA   E +++ F+   R
Sbjct: 117 LEDDR---------EVTFLEASR--------FAQENGLLFLETSALTGENVEEAFLKCAR 159

Query: 195 S 195
           S
Sbjct: 160 S 160

Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1

 Score = 78.5 bits (194), Expect = 2e-18
 Identities = 48/178 (26%), Positives = 83/178 (46%), Gaps = 16/178 (8%)

Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
            K+  +GD  VGK+CLL+   ++ +   Y+ T+  D    TI +D KT  + +WDTAGQE
Sbjct: 3   FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWDTAGQE 62

Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHH-CPKVPIILVGTKADLRS 141
            +  +    Y      ++ + +    S+ N+  +W  E+  +    V  +LVG K DL  
Sbjct: 63  RFRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTD 121

Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKK 199
                  KK      V  ++ K+   ++    +LE SAK    +++ F+   R   K+
Sbjct: 122 -------KKV-----VDYTEAKEFADELG-IPFLETSAKNATNVEEAFMTMAREIKKR 166

Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a)

 Score = 78.7 bits (194), Expect = 2e-18
 Identities = 53/169 (31%), Positives = 79/169 (46%), Gaps = 27/169 (15%)

Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDN---------KTYDV- 73
           +K+  +GD  VGKT  L  +T+NKF   ++ TV  ++ +   V N         K + V 
Sbjct: 5   IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNSQGPDGTSGKAFRVH 64

Query: 74  -TLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHH--CPKVPI 130
             LWDTAGQE +  L    + +   FLL F + S  S+ N+   W  +L+ H  C    I
Sbjct: 65  LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSEQSFLNV-RNWMSQLQAHAYCENPDI 123

Query: 131 ILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSA 179
           +L+G KADL  + +            VS  Q +++  K     Y E SA
Sbjct: 124 VLIGNKADLPDQRE------------VSERQARELADKYGIP-YFETSA 159

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180

>gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15)

 Score = 76.9 bits (189), Expect = 7e-18
 Identities = 53/163 (32%), Positives = 80/163 (49%), Gaps = 16/163 (9%)

Query: 29  VGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQEDYERL 87
           +GD  VGKTCLL   T+N+F + ++ T+  D    TI VD     + +WDTAGQE Y+ +
Sbjct: 6   IGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTI 65

Query: 88  RPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCP-KVPIILVGTKADLRSENKTI 146
               Y       L + I S  SY++I+ KW  ++  + P  V  IL+G KAD   + +  
Sbjct: 66  TKQYYRRAQGIFLVYDISSERSYQHIM-KWVSDVDEYAPEGVQKILIGNKADEEQKRQ-- 122

Query: 147 DKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVF 189
                     V   QG K+  K    ++ E SA  N+ + + F
Sbjct: 123 ----------VGDEQGNKL-AKEYGMDFFETSACTNKNIKESF 154

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14)

 Score = 74.1 bits (182), Expect = 6e-17
 Identities = 53/175 (30%), Positives = 79/175 (45%), Gaps = 22/175 (12%)

Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQED 83
           K   +GD  VGK+CLL   TE KF  D   T+   +    I V+ +   + +WDTAGQE 
Sbjct: 4   KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQER 63

Query: 84  YERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSE 142
           +  +    Y      L+ + I   S+Y N LS W  + ++   P   I L+G KADL ++
Sbjct: 64  FRAVTRSYYRGAAGALMVYDITRRSTY-NHLSSWLTDARNLTNPNTVIFLIGNKADLEAQ 122

Query: 143 NKTI---DKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
                   K+ A E  L+                +LECSAK  E ++  F+   +
Sbjct: 123 RDVTYEEAKQFADENGLL----------------FLECSAKTGENVEDAFLETAK 161

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|128473 smart00176, RAN, Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

 Score = 74.3 bits (182), Expect = 1e-16
 Identities = 49/174 (28%), Positives = 78/174 (44%), Gaps = 17/174 (9%)

Query: 29  VGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQEDYERL 87
           VGDG  GKT  +  H   +F   YV T+  + +P     +       +WDTAGQE +  L
Sbjct: 1   VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGL 60

Query: 88  RPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTID 147
           R   Y    C ++ F + +  +Y+N+   W+ +L   C  +PI+L G K D++       
Sbjct: 61  RDGYYIQGQCAIIMFDVTARVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDVKDR----- 114

Query: 148 KKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQD 201
           K KA  +            RK K  +Y + SAK N   ++ F+   R  +   +
Sbjct: 115 KVKAKSI---------TFHRK-KNLQYYDISAKSNYNFEKPFLWLARKLIGDPN 158

Ran is involved in the active transport of proteins through nuclear pores. Length = 200

>gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B

 Score = 72.5 bits (178), Expect = 3e-16
 Identities = 41/124 (33%), Positives = 62/124 (50%), Gaps = 5/124 (4%)

Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQED 83
           K+  +GD  VGKTCL       +FP     T+  D    T+ +D +   V LWDTAGQE 
Sbjct: 4   KIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQER 63

Query: 84  YER-LRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC--PKVPIILVGTKADLR 140
           + + +    Y N    +  + + + +S+ + L  W  E + H    +VP ILVG K DLR
Sbjct: 64  FRKSMVQHYYRNVHAVVFVYDVTNMASFHS-LPSWIEECEQHSLPNEVPRILVGNKCDLR 122

Query: 141 SENK 144
            + +
Sbjct: 123 EQIQ 126

Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|133306 cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-like

 Score = 72.1 bits (177), Expect = 4e-16
 Identities = 40/119 (33%), Positives = 60/119 (50%), Gaps = 4/119 (3%)

Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVT--LWDTAG 80
           +KV  VG+G VGK+ ++    +  F  DY  T+  D     I +     DV   LWDTAG
Sbjct: 1   IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAG 60

Query: 81  QEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADL 139
           QE+++ +    Y      +L FS     S+E I   W  +++  C  +P++LV TK DL
Sbjct: 61  QEEFDAITKAYYRGAQACILVFSTTDRESFEAI-ESWKEKVEAECGDIPMVLVQTKIDL 118

Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signaling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|219856 pfam08477, Miro, Miro-like protein

 Score = 70.1 bits (172), Expect = 6e-16
 Identities = 35/115 (30%), Positives = 53/115 (46%), Gaps = 3/115 (2%)

Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYP-DTITVDNKTYDVTLWDTAGQED 83
           KV  +GD   GK+ LL      +FP + +    D    DT+ VD  T  + +WD  G+E+
Sbjct: 1   KVVVIGDKGSGKSSLLSQLVGGEFPPEPLEIQGDTLAVDTLEVDGDTGLLNIWDFGGREE 60

Query: 84  YERLRPMSYPNTDCFLLCFSIGSTSSYE--NILSKWYPELKHHCPKVPIILVGTK 136
            +    +     D  LL + +    S    + L  W P L+    K+P+ILVG K
Sbjct: 61  LKFEHIIFMKWADAILLVYDLTDRESLNEVSRLIAWLPNLRKLGGKIPVILVGNK 115

Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116

>gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional

 Score = 72.7 bits (178), Expect = 7e-16
 Identities = 51/178 (28%), Positives = 84/178 (47%), Gaps = 16/178 (8%)

Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQE 82
            K   +GD  VGK+CLL+  T+ +F   +  T+   +    IT+DNK   + +WDTAGQE
Sbjct: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66

Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRS 141
            +  +    Y      LL + I    ++ N L+ W  + + H    + I+L+G K DL  
Sbjct: 67  SFRSITRSYYRGAAGALLVYDITRRETF-NHLASWLEDARQHANANMTIMLIGNKCDL-- 123

Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKK 199
                     A    VST +G++  ++     ++E SAK  + +++ FI       KK
Sbjct: 124 ----------AHRRAVSTEEGEQFAKE-HGLIFMEASAKTAQNVEEAFIKTAAKIYKK 170

Length = 210

>gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26)

 Score = 71.4 bits (175), Expect = 1e-15
 Identities = 52/175 (29%), Positives = 84/175 (48%), Gaps = 21/175 (12%)

Query: 25  KVTTVGDGMVGKTCLLITHTENKF-PTDYVPTV---FDNYPDTITVDNKTYDVTLWDTAG 80
           KV  VGD  VGKTCLL+   +  F    ++ TV   F N    +TVD     + +WDTAG
Sbjct: 2   KVMLVGDSGVGKTCLLVRFKDGAFLAGSFIATVGIQFTN--KVVTVDGVKVKLQIWDTAG 59

Query: 81  QEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPK-VPIILVGTKADL 139
           QE +  +    Y +    LL + + + SS++NI + W  E+  +    V I+L+G KAD+
Sbjct: 60  QERFRSVTHAYYRDAHALLLLYDVTNKSSFDNIRA-WLTEILEYAQSDVVIMLLGNKADM 118

Query: 140 RSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
             E             +V    G+++ ++     ++E SAK    ++  F A  +
Sbjct: 119 SGER------------VVKREDGERLAKEY-GVPFMETSAKTGLNVELAFTAVAK 160

Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191

>gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D

 Score = 70.7 bits (173), Expect = 1e-15
 Identities = 49/168 (29%), Positives = 82/168 (48%), Gaps = 16/168 (9%)

Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
            K+  +G+  VGKT  L  + ++ F + +V TV  D    T+  ++K   + +WDTAGQE
Sbjct: 2   FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRNDKRIKLQIWDTAGQE 61

Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRS 141
            Y  +    Y     F+L + I +  S+ N +  W  ++K +      +ILVG K D+  
Sbjct: 62  RYRTITTAYYRGAMGFILMYDITNEESF-NAVQDWSTQIKTYSWDNAQVILVGNKCDMED 120

Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVF 189
           E             +VS  +G+++  ++   E+ E SAK N  + QVF
Sbjct: 121 ER------------VVSAERGRQLADQL-GFEFFEASAKENINVKQVF 155

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional

 Score = 69.7 bits (170), Expect = 7e-15
 Identities = 51/182 (28%), Positives = 81/182 (44%), Gaps = 17/182 (9%)

Query: 11  GDKDVKSKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNK 69
           G    +S     + K+  +GD  VGK+ LL++   +    D  PT+  D     +TV  K
Sbjct: 2   GSSSGQSSGYDLSFKILLIGDSGVGKSSLLVSFISSSV-EDLAPTIGVDFKIKQLTVGGK 60

Query: 70  TYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVP 129
              +T+WDTAGQE +  L    Y N    +L + +    ++ N+   W  E++ +     
Sbjct: 61  RLKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQD 120

Query: 130 II--LVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQ 187
            +  LVG K D  SE              VS  +G  + ++     +LECSAK  E ++Q
Sbjct: 121 CVKMLVGNKVDRESERD------------VSREEGMALAKEHGCL-FLECSAKTRENVEQ 167

Query: 188 VF 189
            F
Sbjct: 168 CF 169

Length = 211

>gnl|CDD|206711 cd04140, ARHI_like, A Ras homolog member I (ARHI)

 Score = 67.9 bits (166), Expect = 2e-14
 Identities = 48/168 (28%), Positives = 81/168 (48%), Gaps = 16/168 (9%)

Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
           +V   G G VGK+ L++   +  F   Y+PT+ D Y   I+       + + DT G   +
Sbjct: 3   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKSICTLQITDTTGSHQF 62

Query: 85  ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKW--YPELK-HHCPKVPIILVGTKADLRS 141
             ++ +S      F+L +SI S  S E +   +    E+K ++  K+PI+LVG K D  S
Sbjct: 63  PAMQRLSISKGHAFILVYSITSKQSLEELKPIYELICEIKGNNLEKIPIMLVGNKCD-ES 121

Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVF 189
            ++            VS+S+G  + R    A ++E SAK N  + ++F
Sbjct: 122 PSRE-----------VSSSEGAALARTWNCA-FMETSAKTNHNVQELF 157

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206701 cd04128, Spg1, Septum-promoting GTPase (Spg1)

 Score = 67.8 bits (166), Expect = 2e-14
 Identities = 43/167 (25%), Positives = 81/167 (48%), Gaps = 10/167 (5%)

Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPD-TITVDNKTYDVTLWDTAGQE 82
           LK+  +GD  +GKT L++ + E +F  +Y+ T+  N+ + TI++       ++WD  GQ 
Sbjct: 1   LKIGLLGDAQIGKTSLMVKYVEGEFDEEYIQTLGVNFMEKTISIRGTEITFSIWDLGGQR 60

Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSE 142
           ++  + P+   +    L  F +   S+  +I   WY + +        ILVGTK DL + 
Sbjct: 61  EFINMLPLVCKDAVAILFMFDLTRKSTLNSIKE-WYRQARGFNKTAIPILVGTKYDLFA- 118

Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVF 189
              +  ++  E+    T Q +K  + +KA     CS   +  + ++F
Sbjct: 119 --DLPPEEQEEI----TKQARKYAKAMKAPLIF-CSTSHSINVQKIF 158

Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 182

>gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30)

 Score = 67.2 bits (164), Expect = 3e-14
 Identities = 46/168 (27%), Positives = 81/168 (48%), Gaps = 16/168 (9%)

Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
            K+  +G+  VGKTCL+   T+  FP     T+  D    T+ +  +   + +WDTAGQE
Sbjct: 8   FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQE 67

Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCP-KVPIILVGTKADLRS 141
            +  +    Y + +  +L + I    S+   L +W  E++ +   KV  ILVG K D  +
Sbjct: 68  RFRSITQSYYRSANALILTYDITCEESFR-CLPEWLREIEQYANNKVITILVGNKID-LA 125

Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVF 189
           E + + +++A E                +   YLE SAK ++ ++++F
Sbjct: 126 ERREVSQQRAEEFS------------DAQDMYYLETSAKESDNVEKLF 161

Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169

>gnl|CDD|206680 cd01893, Miro1, Mitochondrial Rho family 1 (Miro1), N-terminal

 Score = 67.0 bits (164), Expect = 3e-14
 Identities = 51/178 (28%), Positives = 83/178 (46%), Gaps = 15/178 (8%)

Query: 22  KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY--PDTITVDNKTYDVTLWDTA 79
           K +++  +GD  VGK+ L+++    +FP + VP V      P  +T +      T+ DT+
Sbjct: 1   KDVRIVLIGDEGVGKSSLIMSLVSEEFP-ENVPRVLPEITIPADVTPERVP--TTIVDTS 57

Query: 80  GQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADL 139
            +              +   L +S+   S+ E I +KW P ++    KVPIILVG K+DL
Sbjct: 58  SRPQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDL 117

Query: 140 RSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV 197
           R  +         E  L   ++     R+I+    +ECSAK    + +VF  A + AV
Sbjct: 118 RDGSSQA---GLEEEMLPIMNE----FREIET--CVECSAKTLINVSEVFYYA-QKAV 165

Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 168

>gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19)

 Score = 66.3 bits (162), Expect = 6e-14
 Identities = 41/168 (24%), Positives = 76/168 (45%), Gaps = 15/168 (8%)

Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQED 83
           K+  +GD  VGKTC++       F      T+  D    T+ +  K   + +WDTAGQE 
Sbjct: 5   KIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIQGKRVKLQIWDTAGQER 64

Query: 84  YERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHH-CPKVPIILVGTKADLRSE 142
           +  +    Y + +  ++ + I   SS+E++   W  E++ +    V ++L+G K DL  E
Sbjct: 65  FRTITQSYYRSANGAIIAYDITRRSSFESV-PHWIEEVEKYGASNVVLLLIGNKCDL-EE 122

Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFI 190
            + +  ++A             +         LE SAK +  +++ F+
Sbjct: 123 QREVLFEEA-----------CTLAEHYGILAVLETSAKESSNVEEAFL 159

Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like families

 Score = 65.8 bits (161), Expect = 1e-13
 Identities = 47/182 (25%), Positives = 77/182 (42%), Gaps = 32/182 (17%)

Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
           K+  +G   VGK+ L +     +F  +Y P +   Y   +T+D +   + + DT GQ+  
Sbjct: 1   KIAVLGASGVGKSALTVRFLTKRFIGEYEPNLESLYSRQVTIDGEQVSLEIQDTPGQQQN 60

Query: 85  E----RLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-------PKVPIILV 133
           E      R + +   D F+L +SI   SS++ +       L            ++P+ILV
Sbjct: 61  EDPESLERSLRW--ADGFVLVYSITDRSSFDVVSQ-----LLQLIREIKKRDGEIPVILV 113

Query: 134 GTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLN-EGLDQVFIAA 192
           G KADL                 VST +G+K+  ++    + E SA  N   +  VF   
Sbjct: 114 GNKADL------------LHSRQVSTEEGQKLALELGCL-FFEVSAAENYLEVQNVFHEL 160

Query: 193 VR 194
            R
Sbjct: 161 CR 162

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tumor suppressor activity. Length = 166

>gnl|CDD|133318 cd04118, Rab24, Rab GTPase family 24 (Rab24)

 Score = 65.7 bits (160), Expect = 2e-13
 Identities = 44/168 (26%), Positives = 83/168 (49%), Gaps = 12/168 (7%)

Query: 24  LKVTTVGDGMVGKTCLLITHTENKF-PTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQ 81
           +KV  +G   VGKT L+  +  ++F    Y  T+   +    + V  +   + +WDTAG 
Sbjct: 1   VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGS 60

Query: 82  EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
           E YE +  + Y      ++C+ +  +SS+E     W  EL++      I L GTK+DL  
Sbjct: 61  ERYEAMSRIYYRGAKAAIVCYDLTDSSSFERA-KFWVKELQNLEEHCKIYLCGTKSDLIE 119

Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVF 189
           +++++ +    +V        +    +IK A++ E S+K  + +D++F
Sbjct: 120 QDRSLRQVDFHDV--------QDFADEIK-AQHFETSSKTGQNVDELF 158

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 193

>gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36)

 Score = 64.9 bits (158), Expect = 2e-13
 Identities = 62/193 (32%), Positives = 85/193 (44%), Gaps = 36/193 (18%)

Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFD-NYPDTITVDNKT---------YDVT 74
           KV  VGD  VGKTCL+     N+F  D    VFD NY  TI VD +          + + 
Sbjct: 2   KVIVVGDLSVGKTCLI-----NRFCKD----VFDKNYKATIGVDFEMERFEVLGVPFSLQ 52

Query: 75  LWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPE-LKHHCP-KVPIIL 132
           LWDTAGQE ++ +    Y      ++ F +   +S E+   +W  + LK + P  V + L
Sbjct: 53  LWDTAGQERFKCIASTYYRGAQAIIIVFDLTDVASLEHT-RQWLEDALKENDPSSVLLFL 111

Query: 133 VGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAA 192
           VGTK DL S      +    E D +  ++  K       AEY   SA   E +   F   
Sbjct: 112 VGTKKDLSSP----AQYALMEQDAIKLAREMK-------AEYWAVSALTGENVRDFFF-- 158

Query: 193 VRSAVKKQDKSCC 205
            R A    +  CC
Sbjct: 159 -RVASLTFELGCC 170

Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170

>gnl|CDD|133343 cd04143, Rhes_like, Ras homolog enriched in striatum (Rhes) and activator of G-protein signaling 1 (Dexras1/AGS1)

 Score = 66.3 bits (162), Expect = 2e-13
 Identities = 45/174 (25%), Positives = 80/174 (45%), Gaps = 21/174 (12%)

Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
           ++  +G   VGKT ++      +F   Y PT+ D +    ++  + Y + + DT+G   +
Sbjct: 2   RMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPF 61

Query: 85  ERLRPMSYPNTDCFLLCFSIGSTSSYE-------NIL-SKWYPELK-HHCPKVPIILVGT 135
             +R +S    D F+L FS+ +  S+E        IL +K   + K     K+P+++ G 
Sbjct: 62  PAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGN 121

Query: 136 KADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVF 189
           KAD R   + + + +  +  LV   +            Y E SAK N  LD++F
Sbjct: 122 KAD-RDFPREVQRDEVEQ--LVGGDE---------NCAYFEVSAKKNSNLDEMF 163

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression levels in other tissues. Dexras1 localizes primarily to the cytoplasm, and is a critical regulator of the circadian master clock to photic and nonphotic input. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 247

>gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional

 Score = 64.6 bits (157), Expect = 7e-13
 Identities = 37/118 (31%), Positives = 60/118 (50%), Gaps = 3/118 (2%)

Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPD-TITVDNKTYDVTLWDTAGQE 82
            K+  +GD  VGK+ +L   T N+F  +   T+   +   T+ V+ KT    +WDTAGQE
Sbjct: 13  FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72

Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADL 139
            Y  +    Y      LL + I    +++N+  +W  EL+ H    + I++ G K+DL
Sbjct: 73  RYRAITSAYYRGAVGALLVYDITKRQTFDNVQ-RWLRELRDHADSNIVIMMAGNKSDL 129

Length = 216

>gnl|CDD|206741 cd09914, RocCOR, Ras of complex proteins (Roc) C-terminal of Roc (COR) domain family

 Score = 61.6 bits (150), Expect = 3e-12
 Identities = 45/164 (27%), Positives = 60/164 (36%), Gaps = 16/164 (9%)

Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPD-TITV-DNKTYDVTLWDTAGQE 82
           K+  VG G VGKT L       KF  D   T   N  D  I   + K   + +WD  GQE
Sbjct: 3   KLMLVGQGGVGKTSLCKQLIGEKFDGDESSTHGINVQDWKIPAPERKKIRLNVWDFGGQE 62

Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSE 142
            Y         +   +LL F +  T    + +  W  ++K      P+ILVGT  D   +
Sbjct: 63  IYHATHQFFLTSRSLYLLVFDL-RTGDEVSRVPYWLRQIKAFGGVSPVILVGTHIDESCD 121

Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLD 186
              I KK             KK    I        S K  +G+ 
Sbjct: 122 ED-ILKKALN----------KKFPAIIND--IHFVSCKNGKGIA 152

RocCOR (or Roco) protein family is characterized by a superdomain containing a Ras-like GTPase domain, called Roc (Ras of complex proteins), and a characteristic second domain called COR (C-terminal of Roc). A kinase domain and diverse regulatory domains are also often found in Roco proteins. Their functions are diverse; in Dictyostelium discoideum, which encodes 11 Roco proteins, they are involved in cell division, chemotaxis and development, while in human, where 4 Roco proteins (LRRK1, LRRK2, DAPK1, and MFHAS1) are encoded, these proteins are involved in epilepsy and cancer. Mutations in LRRK2 (leucine-rich repeat kinase 2) are known to cause familial Parkinson's disease. Length = 161

>gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35)

 Score = 61.8 bits (150), Expect = 5e-12
 Identities = 37/129 (28%), Positives = 67/129 (51%), Gaps = 3/129 (2%)

Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQED 83
           K+  +GD  VGK+ LL+   +N F   Y+ T+  D    T+ ++ +   + +WDTAGQE 
Sbjct: 8   KLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQER 67

Query: 84  YERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSEN 143
           +  +    Y  T   ++ + + +  S+ N+  +W  E++ +C  V  +LVG K D   E 
Sbjct: 68  FRTITSTYYRGTHGVIVVYDVTNGESFVNV-KRWLQEIEQNCDDVCKVLVGNKND-DPER 125

Query: 144 KTIDKKKAA 152
           K ++ + A 
Sbjct: 126 KVVETEDAY 134

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199

>gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32 (Rab32)

 Score = 61.6 bits (150), Expect = 6e-12
 Identities = 53/197 (26%), Positives = 79/197 (40%), Gaps = 43/197 (21%)

Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFD-NYPDTITVD----------NKTYD 72
            KV  +GD  VGKT ++           YV  VF  +Y  TI VD          N    
Sbjct: 1   FKVLVIGDLGVGKTSII---------KRYVHGVFSQHYKATIGVDFALKVIEWDPNTVVR 51

Query: 73  VTLWDTAGQEDYERLRPMS---YPNTDCFLLCFSIGSTSSYENILSKWYPEL--KHHCP- 126
           + LWD AGQ   ER   M+   Y      ++ F +   S++E +L KW  +L  K   P 
Sbjct: 52  LQLWDIAGQ---ERFGGMTRVYYKGAVGAIIVFDVTRPSTFEAVL-KWKADLDSKVTLPN 107

Query: 127 --KVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEG 184
              +P +L+  K DL+ E      K   ++D      G           + E SAK N  
Sbjct: 108 GEPIPALLLANKCDLKKER---LAKDPEQMDQFCKENG--------FIGWFETSAKENIN 156

Query: 185 LDQVFIAAVRSAVKKQD 201
           +++     V++ +K   
Sbjct: 157 IEEAMRFLVKNILKNDK 173

Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 201

>gnl|CDD|206715 cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfamily of Ras GTPases

 Score = 60.9 bits (148), Expect = 1e-11
 Identities = 48/179 (26%), Positives = 77/179 (43%), Gaps = 27/179 (15%)

Query: 24  LKVTTVGDGMVGKTCL-LITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQE 82
            +V  +GD  VGK+ L  I        + Y  +  D Y  T++VD +   + ++D   QE
Sbjct: 1   YRVVLLGDSGVGKSSLANIFTAGVYEDSAYEASGDDTYERTVSVDGEEATLVVYDHWEQE 60

Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELK------HHCPKVPIILVGTK 136
           D   L        D +++ +S+   SS+E        EL+           +PIILVG K
Sbjct: 61  DGMWLEDSCMQVGDAYVIVYSVTDRSSFEKA-----SELRIQLRRARQAEDIPIILVGNK 115

Query: 137 ADL-RSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
           +DL RS               VS  +G+     +   +++E SA L   +D++F   VR
Sbjct: 116 SDLVRSR-------------EVSVQEGRAC-AVVFDCKFIETSAALQHNVDELFEGIVR 160

RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ras superfamily members. The N-terminal extension is not conserved among family members; the C-terminal extension is reported to be conserved among the family and lack the CaaX prenylation motif typical of membrane-associated Ras proteins. However, a putative CaaX motif has been identified in the alignment of the C-terminal residues of this CD. Length = 219

>gnl|CDD|206688 cd04101, RabL4, Rab GTPase-like family 4 (Rab-like4)

 Score = 59.8 bits (145), Expect = 1e-11
 Identities = 39/173 (22%), Positives = 76/173 (43%), Gaps = 21/173 (12%)

Query: 24  LKVTTVGDGMVGKTCLL-ITHTENK-FPTDYVPTV-FDNYPDTITVDN--KTYDVTLWDT 78
            +   VGD  VGK+ L+ + H++   F  +Y  T   D    T+ V +   + ++ ++D+
Sbjct: 1   AQCAVVGDPAVGKSALVQMFHSDGATFQKNYTMTTGCDLVVKTVPVPDTSDSVELFIFDS 60

Query: 79  AGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKV--PIILVGTK 136
           AGQE +  +    +       + + + +  S+ N  S+W   ++ H   +  P +LVG K
Sbjct: 61  AGQELFSDMVENVWEQPAVVCVVYDVTNEVSFNNC-SRWINRVRTHSHGLHTPGVLVGNK 119

Query: 137 ADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVF 189
            DL       D+++       + +Q   +       ++ E SAK   G +  F
Sbjct: 120 CDL------TDRREVDAAQAQALAQANTL-------KFYETSAKEGVGYEAPF 159

RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. Length = 167

>gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12)

 Score = 60.4 bits (146), Expect = 2e-11
 Identities = 48/178 (26%), Positives = 84/178 (47%), Gaps = 15/178 (8%)

Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
           L+V  +G   VGKT L+   T++ F      TV  D    T+ +  K   + +WDTAGQE
Sbjct: 1   LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE 60

Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPEL-KHHCPKVPIILVGTKADLRS 141
            +  +    Y +    +L + I    ++++ L KW   + K+      ++LVG K D  +
Sbjct: 61  RFNSITSAYYRSAKGIILVYDITKKETFDD-LPKWMKMIDKYASEDAELLLVGNKLDCET 119

Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKK 199
           + +            ++  QG+K  ++I    + E SAK N  +D++F+  V   +KK
Sbjct: 120 DRE------------ITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKK 165

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202

>gnl|CDD|206714 cd04147, Ras_dva, Ras - dorsal-ventral anterior localization (Ras-dva) family

 Score = 59.5 bits (144), Expect = 4e-11
 Identities = 44/174 (25%), Positives = 77/174 (44%), Gaps = 15/174 (8%)

Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
           ++  +G   VGKT L+     + F   +  TV + +     V      + + DT+G   +
Sbjct: 1   RLVFMGAAGVGKTALIQRFLYDTFEPKHRRTVEELHSKEYEVAGVKVTIDILDTSGSYSF 60

Query: 85  ERLRPMSYPNTDCFLLCFSIGSTSSYENI--LSKWYPELKHHCPKVPIILVGTKADLRSE 142
             +R +S  N D F L +S+    S+E +  L +   E+K     VPI++VG K D  +E
Sbjct: 61  PAMRKLSIQNGDAFALVYSVDDPESFEEVKRLREEILEVKED-KFVPIVVVGNKIDSLAE 119

Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSA 196
            +       + V+L   +             ++E SAK NE + +VF   ++ A
Sbjct: 120 RQVEAADALSTVELDWNNG------------FVEASAKDNENVTEVFKELLQQA 161

Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 197

>gnl|CDD|133326 cd04126, Rab20, Rab GTPase family 20 (Rab20)

 Score = 57.6 bits (139), Expect = 2e-10
 Identities = 49/190 (25%), Positives = 77/190 (40%), Gaps = 32/190 (16%)

Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQED 83
           LKV  +GD  VGKT LL  + E +F  D V TV   +          Y++++WDTAG+E 
Sbjct: 1   LKVVLLGDMNVGKTSLLHRYMERRFK-DTVSTVGGAF---YLKQWGPYNISIWDTAGREQ 56

Query: 84  YERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELK---HHCPKVPIILVGTKADLR 140
           +  L  M        +L + + +  S E +  ++          C      +VG K DL 
Sbjct: 57  FHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLF---AVVGNKLDL- 112

Query: 141 SENKTIDKKKAAEVDL--------VSTSQGKKMRRKI-----------KAAE--YLECSA 179
           +E   +  ++    D         V+    K   ++I            AAE    E SA
Sbjct: 113 TEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSA 172

Query: 180 KLNEGLDQVF 189
           K    +D++F
Sbjct: 173 KTGYNVDELF 182

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 220

>gnl|CDD|133342 cd04142, RRP22, Ras-related protein on chromosome 22 (RRP22) family

 Score = 50.6 bits (121), Expect = 5e-08
 Identities = 50/186 (26%), Positives = 83/186 (44%), Gaps = 26/186 (13%)

Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDN-YPDTITVDNKTYDVTLWD----- 77
           ++V  +G   VGKT ++      +FP +Y+PT     Y   + +  + YD+ + D     
Sbjct: 1   VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQ 60

Query: 78  ----TAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENI--LSKWYPELK-HHCPKVPI 130
               TAGQE +   R     N+  F+L + I S  S+  +  L +   E +     + PI
Sbjct: 61  RYPGTAGQE-WMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPI 119

Query: 131 ILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFI 190
           ++VG K D +       + + A   ++S      + RK     YLECSAK N  +  +F 
Sbjct: 120 VVVGNKRDQQ-------RHRFAPRHVLSV-----LVRKSWKCGYLECSAKYNWHILLLFK 167

Query: 191 AAVRSA 196
             + SA
Sbjct: 168 ELLISA 173

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. Length = 198

>gnl|CDD|133321 cd04121, Rab40, Rab GTPase family 40 (Rab40) contains Rab40a, Rab40b and Rab40c

 Score = 49.9 bits (119), Expect = 8e-08
 Identities = 35/117 (29%), Positives = 55/117 (47%), Gaps = 2/117 (1%)

Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDT-ITVDNKTYDVTLWDTAGQE 82
           LK   VGD  VGK  +L +  +    + Y   +  +Y  T I +D +   + LWDT+GQ 
Sbjct: 7   LKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQG 66

Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADL 139
            +  +           +L + I +  S++ I  +W  E+  H P VP ILVG +  L
Sbjct: 67  RFCTIFRSYSRGAQGIILVYDITNRWSFDGI-DRWIKEIDEHAPGVPKILVGNRLHL 122

The Rab40 subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 189

>gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28)

 Score = 47.1 bits (112), Expect = 1e-06
 Identities = 38/146 (26%), Positives = 63/146 (43%), Gaps = 12/146 (8%)

Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITV-DNKTYDVTLWDTAGQ 81
           +K+  +GDG  GKT L+    +  F   Y  T+  D +   IT+  +    + +WD  GQ
Sbjct: 1   IKIVVLGDGASGKTSLIRRFAQEGFGKSYKQTIGLDFFSRRITLPGSLNVTLQVWDIGGQ 60

Query: 82  EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCP----KVPIILVGTKA 137
           +   ++            L + I ++ S+EN L  W   +K        K  ++LVG K 
Sbjct: 61  QIGGKMLDKYIYGAQAVCLVYDITNSQSFEN-LEDWLSVVKKVNEESETKPKMVLVGNKT 119

Query: 138 DLRSENKTID----KKKAAEVDLVST 159
           DL   N+ +      + A E D+ S 
Sbjct: 120 DL-EHNRQVTAEKHARFAQENDMESI 144

Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213

>gnl|CDD|185444 PTZ00099, PTZ00099, rab6; Provisional

 Score = 45.1 bits (106), Expect = 4e-06
 Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 3/96 (3%)

Query: 46  NKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSI 104
           + F  +Y  T+  D    T+ +D     + LWDTAGQE +  L P    ++   ++ + I
Sbjct: 3   DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDI 62

Query: 105 GSTSSYENILSKWYPE-LKHHCPKVPIILVGTKADL 139
            +  S+EN  +KW  + L      V I LVG K DL
Sbjct: 63  TNRQSFENT-TKWIQDILNERGKDVIIALVGNKTDL 97

Length = 176

>gnl|CDD|133303 cd04103, Centaurin_gamma, Centaurin gamma (CENTG) GTPase

 Score = 41.3 bits (97), Expect = 7e-05
 Identities = 35/173 (20%), Positives = 75/173 (43%), Gaps = 29/173 (16%)

Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPT-DYVP---TVFDNYPDTITVDNKTYDVTLWDTA 79
           LK+  VG+   GK+ L+     +++ T  YV         +   + VD +++ + + D  
Sbjct: 1   LKLGIVGNLRSGKSALV-----HRYLTGSYVQLESPEGGRFKKEVLVDGQSHLLLIRDEG 55

Query: 80  GQEDYERLRPMSYPN-TDCFLLCFSIGSTSSYENILSKWYPELKHHCP--KVPIILVGTK 136
           G  D        +    D  +  FS+   +S++ +  + Y +L  +    ++P+ILVGT+
Sbjct: 56  GAPD------AQFAGWVDAVIFVFSLEDEASFQTV-YRLYHQLSSYRNISEIPLILVGTQ 108

Query: 137 ADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVF 189
                     D   A+   ++  ++ +++   +K   Y E  A     +++VF
Sbjct: 109 ----------DAISASNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVF 151

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues. GGAP has been shown to have high GTPase activity due to a direct intramolecular interaction between the N-terminal GTPase domain and the C-terminal ArfGAP domain. In human tissue, AGAP mRNA was detected in skeletal muscle, kidney, placenta, brain, heart, colon, and lung. Reduced expression levels were also observed in the spleen, liver, and small intestine. Length = 158

>gnl|CDD|234395 TIGR03918, GTP_HydF, [FeFe] hydrogenase H-cluster maturation GTPase HydF

 Score = 39.0 bits (92), Expect = 8e-04
 Identities = 32/112 (28%), Positives = 46/112 (41%), Gaps = 21/112 (18%)

Query: 73  VTLWDTAGQED--------YERLRPMSYPNTDCFLLCFSIGST-SSYENILSKWYPELKH 123
           V L DTAG +D         E+ R +    TD  LL    G     YE    +   ELK 
Sbjct: 57  VVLIDTAGLDDEGELGELRVEKTREVLD-KTDLALLVVDAGVGPGEYE---LELIEELKE 112

Query: 124 HCPKVPIILVGTKADLRSENKTIDKKKAAEVD---LVSTSQGK---KMRRKI 169
              K+P I+V  K DL  E+  ++K +         VS   G+   +++  I
Sbjct: 113 R--KIPYIVVINKIDLGEESAELEKLEKKFGLPPIFVSALTGEGIDELKEAI 162

This model describes the family of the [Fe] hydrogenase maturation protein HypF as characterized in Chlamydomonas reinhardtii and found, in an operon with radical SAM proteins HydE and HydG, in numerous bacteria. It has GTPase activity, can bind an 4Fe-4S cluster, and is essential for hydrogenase activity [Protein fate, Protein modification and repair]. Length = 391

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	205
KOG0084|consensus	205		100.0
KOG0092|consensus	200		100.0
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	100.0
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	100.0
KOG0078|consensus	207		100.0
KOG0098|consensus	216		100.0
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	100.0
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	100.0
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	100.0
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	100.0
KOG0080|consensus	209		100.0
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	100.0
KOG0394|consensus	210		100.0
KOG0094|consensus	221		100.0
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	100.0
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	100.0
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	100.0
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	100.0
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	100.0
KOG0086|consensus	214		100.0
KOG0087|consensus	222		100.0
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	100.0
KOG0093|consensus	193		100.0
KOG0079|consensus	198		100.0
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	100.0
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	100.0
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	100.0
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	100.0
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	100.0
KOG0095|consensus	213		100.0
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	100.0
KOG0091|consensus	213		100.0
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	100.0
PTZ00369	189	Ras-like protein; Provisional	100.0
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	100.0
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	100.0
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	100.0
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	100.0
KOG0393|consensus	198		100.0
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	100.0
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	100.0
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	100.0
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	100.0
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	100.0
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	100.0
KOG0088|consensus	218		100.0
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	100.0
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	100.0
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	100.0
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	100.0
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	100.0
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	100.0
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	100.0
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	100.0
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	100.0
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	100.0
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	100.0
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	100.0
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	100.0
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	100.0
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	100.0
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	100.0
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	100.0
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	100.0
PLN03110	216	Rab GTPase; Provisional	100.0
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	100.0
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	100.0
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	100.0
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	100.0
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	100.0
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	100.0
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	100.0
PLN03108	210	Rab family protein; Provisional	100.0
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	100.0
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	100.0
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	100.0
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	100.0
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	100.0
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	100.0
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	100.0
KOG0081|consensus	219		100.0
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	100.0
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	100.0
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	100.0
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	100.0
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	100.0
PLN03118	211	Rab family protein; Provisional	100.0
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	100.0
KOG0097|consensus	215		100.0
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	100.0
KOG0395|consensus	196		100.0
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	100.0
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	100.0
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.98
PLN00223	181	ADP-ribosylation factor; Provisional	99.98
KOG0083|consensus	192		99.98
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.98
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.98
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.97
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.97
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.97
PTZ00133	182	ADP-ribosylation factor; Provisional	99.97
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.97
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.97
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.97
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.97
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.97
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.97
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.97
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.97
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.97
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.96
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.96
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.96
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.96
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.96
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.96
KOG4252|consensus	246		99.96
PLN00023	334	GTP-binding protein; Provisional	99.96
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.96
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.96
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.95
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.95
KOG0070|consensus	181		99.95
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.95
KOG0073|consensus	185		99.95
PTZ00099	176	rab6; Provisional	99.95
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.94
COG1100	219	GTPase SAR1 and related small G proteins [General	99.94
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.94
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.94
KOG0075|consensus	186		99.94
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.94
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.93
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.93
KOG0071|consensus	180		99.93
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.93
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.92
PRK12299	335	obgE GTPase CgtA; Reviewed	99.92
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.91
PRK04213	201	GTP-binding protein; Provisional	99.91
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.91
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.91
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.91
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.91
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.91
PRK03003	472	GTP-binding protein Der; Reviewed	99.91
PRK15494	339	era GTPase Era; Provisional	99.9
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.9
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.9
KOG3883|consensus	198		99.9
KOG1673|consensus	205		99.9
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.9
KOG0072|consensus	182		99.9
cd00881	189	GTP_translation_factor GTP translation factor fami	99.9
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.89
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.89
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.89
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.89
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.89
PRK03003	472	GTP-binding protein Der; Reviewed	99.89
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.89
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.89
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.88
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.88
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.88
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.88
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.88
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.88
PRK00089	292	era GTPase Era; Reviewed	99.88
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.88
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.88
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.87
PRK00093	435	GTP-binding protein Der; Reviewed	99.87
PRK12297	424	obgE GTPase CgtA; Reviewed	99.87
KOG0096|consensus	216		99.86
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.86
CHL00189	742	infB translation initiation factor 2; Provisional	99.86
PRK11058	426	GTPase HflX; Provisional	99.86
PRK12296	500	obgE GTPase CgtA; Reviewed	99.86
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.86
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.86
KOG0074|consensus	185		99.86
PRK05306	787	infB translation initiation factor IF-2; Validated	99.86
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.85
PRK00093	435	GTP-binding protein Der; Reviewed	99.85
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.85
PRK12298	390	obgE GTPase CgtA; Reviewed	99.85
KOG1707|consensus	625		99.84
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.84
KOG0076|consensus	197		99.84
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.84
KOG1423|consensus	379		99.84
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.83
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.83
COG1159	298	Era GTPase [General function prediction only]	99.83
COG2229	187	Predicted GTPase [General function prediction only	99.83
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.83
PRK05433	600	GTP-binding protein LepA; Provisional	99.83
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.82
KOG4423|consensus	229		99.82
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.82
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.81
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.81
PRK12317	425	elongation factor 1-alpha; Reviewed	99.81
COG1160	444	Predicted GTPases [General function prediction onl	99.81
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.8
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.8
PRK10218	607	GTP-binding protein; Provisional	99.79
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.79
PRK04004	586	translation initiation factor IF-2; Validated	99.79
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.79
KOG0077|consensus	193		99.79
COG1160	444	Predicted GTPases [General function prediction onl	99.79
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.79
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.79
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.78
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.78
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.78
COG0486	454	ThdF Predicted GTPase [General function prediction	99.78
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	99.76
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.76
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.74
KOG1489|consensus	366		99.73
PRK12736	394	elongation factor Tu; Reviewed	99.73
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.72
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.72
PRK12735	396	elongation factor Tu; Reviewed	99.72
COG1163	365	DRG Predicted GTPase [General function prediction	99.72
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.71
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.71
COG0218	200	Predicted GTPase [General function prediction only	99.7
PF09439	181	SRPRB: Signal recognition particle receptor beta s	99.7
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.7
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	99.69
COG3596	296	Predicted GTPase [General function prediction only	99.68
CHL00071	409	tufA elongation factor Tu	99.68
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.68
COG1084	346	Predicted GTPase [General function prediction only	99.68
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.67
PRK13351	687	elongation factor G; Reviewed	99.67
COG0536	369	Obg Predicted GTPase [General function prediction	99.66
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.65
KOG0090|consensus	238		99.65
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.65
PRK00049	396	elongation factor Tu; Reviewed	99.64
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.64
COG2262	411	HflX GTPases [General function prediction only]	99.63
TIGR00503	527	prfC peptide chain release factor 3. This translat	99.63
PTZ00141	446	elongation factor 1- alpha; Provisional	99.62
PLN03126	478	Elongation factor Tu; Provisional	99.62
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.62
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.62
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	99.62
KOG0462|consensus	650		99.62
PLN00043	447	elongation factor 1-alpha; Provisional	99.61
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	99.61
PLN03127	447	Elongation factor Tu; Provisional	99.61
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.59
KOG1145|consensus	683		99.57
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	99.57
KOG1532|consensus	366		99.55
PRK13768	253	GTPase; Provisional	99.54
PRK09866	741	hypothetical protein; Provisional	99.54
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	99.54
PRK12739	691	elongation factor G; Reviewed	99.53
KOG1191|consensus	531		99.52
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	99.52
PRK00007	693	elongation factor G; Reviewed	99.52
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	99.51
KOG1486|consensus	364		99.51
KOG1144|consensus	1064		99.5
PRK14845	1049	translation initiation factor IF-2; Provisional	99.5
PRK12740	668	elongation factor G; Reviewed	99.49
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	99.49
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	99.49
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	99.48
KOG1707|consensus	625		99.48
PRK09602	396	translation-associated GTPase; Reviewed	99.47
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	99.47
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	99.44
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	99.44
TIGR00101	199	ureG urease accessory protein UreG. This model rep	99.44
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	99.43
KOG1490|consensus	620		99.42
KOG3905|consensus	473		99.39
KOG0705|consensus	749		99.38
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	99.37
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	99.36
KOG3887|consensus	347		99.36
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	99.34
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	99.34
PRK09435	332	membrane ATPase/protein kinase; Provisional	99.33
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	99.33
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	99.32
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	99.31
KOG0461|consensus	522		99.29
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	99.29
KOG3886|consensus	295		99.28
PRK07560	731	elongation factor EF-2; Reviewed	99.27
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	99.26
COG1217	603	TypA Predicted membrane GTPase involved in stress	99.24
PTZ00416	836	elongation factor 2; Provisional	99.22
PLN00116	843	translation elongation factor EF-2 subunit; Provis	99.22
PTZ00258	390	GTP-binding protein; Provisional	99.22
KOG0082|consensus	354		99.21
KOG1143|consensus	591		99.2
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	99.15
KOG1487|consensus	358		99.14
PRK09601	364	GTP-binding protein YchF; Reviewed	99.12
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	99.11
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	99.1
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	99.07
KOG0458|consensus	603		99.07
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	99.04
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	99.04
PRK00098	298	GTPase RsgA; Reviewed	99.03
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	99.03
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	99.02
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	99.02
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	99.01
COG3276	447	SelB Selenocysteine-specific translation elongatio	99.0
COG5019	373	CDC3 Septin family protein [Cell division and chro	98.99
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	98.97
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	98.94
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.94
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	98.94
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.93
KOG1547|consensus	336		98.93
KOG0468|consensus	971		98.93
PRK12289	352	GTPase RsgA; Reviewed	98.91
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	98.91
COG0012	372	Predicted GTPase, probable translation factor [Tra	98.9
KOG0463|consensus	641		98.89
KOG2655|consensus	366		98.87
PRK12288	347	GTPase RsgA; Reviewed	98.84
COG0050	394	TufB GTPases - translation elongation factors [Tra	98.83
COG5258	527	GTPBP1 GTPase [General function prediction only]	98.82
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.78
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.77
KOG2486|consensus	320		98.73
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.66
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	98.65
KOG0410|consensus	410		98.65
PF09547	492	Spore_IV_A: Stage IV sporulation protein A (spore_	98.63
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	98.6
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	98.57
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.57
PRK13796	365	GTPase YqeH; Provisional	98.57
KOG1491|consensus	391		98.55
KOG1954|consensus	532		98.53
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.51
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.51
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.5
KOG0448|consensus	749		98.47
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.47
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.47
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.46
KOG0085|consensus	359		98.46
PF00503	389	G-alpha: G-protein alpha subunit; InterPro: IPR001	98.42
KOG0460|consensus	449		98.41
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.39
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	98.37
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.37
TIGR00092	368	GTP-binding protein YchF. This predicted GTP-bindi	98.36
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.32
KOG0447|consensus	980		98.3
PRK01889	356	GTPase RsgA; Reviewed	98.27
cd03112	158	CobW_like The function of this protein family is u	98.26
KOG1534|consensus	273		98.26
COG1161	322	Predicted GTPases [General function prediction onl	98.26
KOG0465|consensus	721		98.24
KOG3859|consensus	406		98.23
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.2
KOG0464|consensus	753		98.14
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	98.13
PRK10416	318	signal recognition particle-docking protein FtsY;	98.11
PRK14974	336	cell division protein FtsY; Provisional	98.11
PRK12288	347	GTPase RsgA; Reviewed	98.11
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	98.07
PF06858	58	NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte	98.06
PRK12289	352	GTPase RsgA; Reviewed	98.06
KOG0466|consensus	466		98.04
KOG0467|consensus	887		98.02
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	98.02
TIGR00064	272	ftsY signal recognition particle-docking protein F	98.02
COG1162	301	Predicted GTPases [General function prediction onl	98.01
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	97.97
PRK13695	174	putative NTPase; Provisional	97.97
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	97.89
PF02492	178	cobW: CobW/HypB/UreG, nucleotide-binding domain; I	97.86
PRK00098	298	GTPase RsgA; Reviewed	97.85
KOG4273|consensus	418		97.85
PRK13796	365	GTPase YqeH; Provisional	97.85
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	97.83
COG3640	255	CooC CO dehydrogenase maturation factor [Cell divi	97.83
COG0523	323	Putative GTPases (G3E family) [General function pr	97.77
COG3523	1188	IcmF Type VI protein secretion system component Va	97.74
cd03114	148	ArgK-like The function of this protein family is u	97.71
PRK11537	318	putative GTP-binding protein YjiA; Provisional	97.71
COG1162	301	Predicted GTPases [General function prediction onl	97.7
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	97.69
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	97.65
KOG1533|consensus	290		97.59
KOG0459|consensus	501		97.59
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	97.54
PRK08118	167	topology modulation protein; Reviewed	97.54
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	97.52
cd03115	173	SRP The signal recognition particle (SRP) mediates	97.52
KOG2484|consensus	435		97.47
KOG0099|consensus	379		97.47
PRK07261	171	topology modulation protein; Provisional	97.45
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	97.45
PF13555	62	AAA_29: P-loop containing region of AAA domain	97.44
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	97.44
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	97.44
PRK14738	206	gmk guanylate kinase; Provisional	97.42
TIGR00959	428	ffh signal recognition particle protein. This mode	97.42
KOG1424|consensus	562		97.41
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	97.4
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	97.4
PRK14737	186	gmk guanylate kinase; Provisional	97.36
PRK10867	433	signal recognition particle protein; Provisional	97.35
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	97.35
TIGR02475	341	CobW cobalamin biosynthesis protein CobW. A broade	97.34
PRK00771	437	signal recognition particle protein Srp54; Provisi	97.33
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	97.32
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	97.3
KOG2485|consensus	335		97.3
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	97.29
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	97.28
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	97.27
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	97.25
KOG0469|consensus	842		97.22
PF00005	137	ABC_tran: ABC transporter This structure is on hol	97.2
PRK06217	183	hypothetical protein; Validated	97.19
cd02042	104	ParA ParA and ParB of Caulobacter crescentus belon	97.17
PRK03839	180	putative kinase; Provisional	97.16
PF00004	132	AAA: ATPase family associated with various cellula	97.12
PRK14530	215	adenylate kinase; Provisional	97.09
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	97.08
smart00382	148	AAA ATPases associated with a variety of cellular	97.05
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	97.04
TIGR00235	207	udk uridine kinase. Model contains a number of lon	97.04
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	97.03
COG1161	322	Predicted GTPases [General function prediction onl	97.02
COG1936	180	Predicted nucleotide kinase (related to CMP and AM	97.01
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	97.01
PRK04195	482	replication factor C large subunit; Provisional	97.01
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	97.0
PRK08233	182	hypothetical protein; Provisional	97.0
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	97.0
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	96.99
KOG3929|consensus	363		96.99
PRK13949	169	shikimate kinase; Provisional	96.98
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	96.97
PRK14532	188	adenylate kinase; Provisional	96.97
PTZ00088	229	adenylate kinase 1; Provisional	96.97
PRK05480	209	uridine/cytidine kinase; Provisional	96.97
PLN03025	319	replication factor C subunit; Provisional	96.97
COG3638	258	ABC-type phosphate/phosphonate transport system, A	96.96
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	96.95
KOG3347|consensus	176		96.95
KOG0066|consensus	807		96.94
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	96.94
cd03111	106	CpaE_like This protein family consists of proteins	96.93
PRK14531	183	adenylate kinase; Provisional	96.93
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	96.93
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	96.92
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	96.92
KOG2423|consensus	572		96.91
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	96.9
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	96.9
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	96.89
PRK02496	184	adk adenylate kinase; Provisional	96.89
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	96.89
PF02367	123	UPF0079: Uncharacterised P-loop hydrolase UPF0079;	96.89
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	96.88
PLN02200	234	adenylate kinase family protein	96.87
PRK00625	173	shikimate kinase; Provisional	96.86
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	96.86
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	96.86
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	96.85
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	96.84
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	96.84
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	96.83
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	96.83
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	96.83
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	96.82
KOG2423|consensus	572		96.82
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	96.82
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	96.81
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	96.81
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	96.81
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	96.81
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	96.79
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	96.79
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	96.78
TIGR01351	210	adk adenylate kinases. Adenylate kinase (EC 2.7.4.	96.78
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	96.78

>KOG0084|consensus

Probab=100.00  E-value=5.7e-42  Score=237.55  Aligned_cols=169  Identities=28%  Similarity=0.574  Sum_probs=160.6

Q ss_pred             ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcE
Q psy15714         19 SVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDC   97 (205)
Q Consensus        19 ~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   97 (205)
                      ...+.+||+|+|+.|+|||+|+.||.++.|.+.+..|++.++ .+.+.++|+.++++||||+||++|+++...+++++++
T Consensus         5 ~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahG   84 (205)
T KOG0084|consen    5 EYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG   84 (205)
T ss_pred             ccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCe
Confidence            456889999999999999999999999999999999999999 5789999999999999999999999999999999999


Q ss_pred             EEEEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEE
Q psy15714         98 FLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLE  176 (205)
Q Consensus        98 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (205)
                      +|+|||+++.+||.++. .|+..+.++. +++|.++||||+|+.+.+            .++.++++.++..+++..++|
T Consensus        85 ii~vyDiT~~~SF~~v~-~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~------------~v~~~~a~~fa~~~~~~~f~E  151 (205)
T KOG0084|consen   85 IIFVYDITKQESFNNVK-RWIQEIDRYASENVPKLLVGNKCDLTEKR------------VVSTEEAQEFADELGIPIFLE  151 (205)
T ss_pred             EEEEEEcccHHHhhhHH-HHHHHhhhhccCCCCeEEEeeccccHhhe------------ecCHHHHHHHHHhcCCcceee
Confidence            99999999999999998 8999999998 788999999999999887            899999999999999998999


Q ss_pred             cccCCCCCHHHHHHHHHHHHHhhc
Q psy15714        177 CSAKLNEGLDQVFIAAVRSAVKKQ  200 (205)
Q Consensus       177 ~Sa~~~~~i~~~~~~i~~~~~~~~  200 (205)
                      +||+++.++++.|..+...+....
T Consensus       152 TSAK~~~NVe~~F~~la~~lk~~~  175 (205)
T KOG0084|consen  152 TSAKDSTNVEDAFLTLAKELKQRK  175 (205)
T ss_pred             cccCCccCHHHHHHHHHHHHHHhc
Confidence            999999999999999999887753

>KOG0092|consensus

Probab=100.00  E-value=1.2e-40  Score=230.12  Aligned_cols=166  Identities=31%  Similarity=0.549  Sum_probs=155.8

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEE
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFL   99 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   99 (205)
                      ...+|++++|..++|||||+.||..+.|.+...+|++..+ ++.+.+++..++|.||||+|+++|+++-++++++++++|
T Consensus         3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi   82 (200)
T KOG0092|consen    3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI   82 (200)
T ss_pred             cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence            5679999999999999999999999999998899998888 788999999999999999999999999999999999999


Q ss_pred             EEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcc
Q psy15714        100 LCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECS  178 (205)
Q Consensus       100 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  178 (205)
                      +|||+++.+||..+. .|+..+.+.. +++-+.+||||+||...+            .+..++++.++.+.+.. |+|+|
T Consensus        83 vvYDit~~~SF~~aK-~WvkeL~~~~~~~~vialvGNK~DL~~~R------------~V~~~ea~~yAe~~gll-~~ETS  148 (200)
T KOG0092|consen   83 VVYDITDEESFEKAK-NWVKELQRQASPNIVIALVGNKADLLERR------------EVEFEEAQAYAESQGLL-FFETS  148 (200)
T ss_pred             EEEecccHHHHHHHH-HHHHHHHhhCCCCeEEEEecchhhhhhcc------------cccHHHHHHHHHhcCCE-EEEEe
Confidence            999999999999998 8999999887 677788999999999865            89999999999999998 99999


Q ss_pred             cCCCCCHHHHHHHHHHHHHhhc
Q psy15714        179 AKLNEGLDQVFIAAVRSAVKKQ  200 (205)
Q Consensus       179 a~~~~~i~~~~~~i~~~~~~~~  200 (205)
                      |++|.|++++|..|.+.+....
T Consensus       149 AKTg~Nv~~if~~Ia~~lp~~~  170 (200)
T KOG0092|consen  149 AKTGENVNEIFQAIAEKLPCSD  170 (200)
T ss_pred             cccccCHHHHHHHHHHhccCcc
Confidence            9999999999999999877643

>cd01875 RhoG RhoG subfamily

Probab=100.00  E-value=2.4e-39  Score=234.72  Aligned_cols=178  Identities=52%  Similarity=0.961  Sum_probs=155.5

Q ss_pred             eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEE
Q psy15714         22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLC  101 (205)
Q Consensus        22 ~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v  101 (205)
                      ..+||+++|+.|+|||||+.+|..+.|...+.+|.+..+...+.+++..+.+.|||++|+++|+.+++.+++++|++|+|
T Consensus         2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv   81 (191)
T cd01875           2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC   81 (191)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence            45899999999999999999999999999999999887766677899999999999999999999999999999999999


Q ss_pred             EECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCC
Q psy15714        102 FSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKL  181 (205)
Q Consensus       102 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  181 (205)
                      ||++++.||+++...|+..+....+++|+++|+||.||.......+.......+.++.++++.+++..+..+++++||++
T Consensus        82 ydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk~  161 (191)
T cd01875          82 FSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALN  161 (191)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCCC
Confidence            99999999999976799888776678999999999999765432222222233467888999999999876699999999


Q ss_pred             CCCHHHHHHHHHHHHHhh
Q psy15714        182 NEGLDQVFIAAVRSAVKK  199 (205)
Q Consensus       182 ~~~i~~~~~~i~~~~~~~  199 (205)
                      |+|++++|.++++.+...
T Consensus       162 g~~v~e~f~~l~~~~~~~  179 (191)
T cd01875         162 QDGVKEVFAEAVRAVLNP  179 (191)
T ss_pred             CCCHHHHHHHHHHHHhcc
Confidence            999999999999988774

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=100.00  E-value=4.1e-39  Score=231.16  Aligned_cols=179  Identities=37%  Similarity=0.738  Sum_probs=155.1

Q ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEE
Q psy15714         20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFL   99 (205)
Q Consensus        20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   99 (205)
                      +...+||+++|++|+|||||+++|..+.|...+.||.+..+...+.+++..+.+.|||++|++.|+.+++.+++++|+++
T Consensus         2 ~~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~i   81 (182)
T cd04172           2 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL   81 (182)
T ss_pred             CcceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEE
Confidence            34678999999999999999999999999999999998888777889999999999999999999999999999999999


Q ss_pred             EEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEccc
Q psy15714        100 LCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSA  179 (205)
Q Consensus       100 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  179 (205)
                      +|||++++.||+++...|+..+....++.|+++||||+||...............+.++.++++++++..++.+|+||||
T Consensus        82 lvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SA  161 (182)
T cd04172          82 ICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA  161 (182)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECCc
Confidence            99999999999998558999998888899999999999996432111111111123689999999999999756999999


Q ss_pred             CCCCC-HHHHHHHHHHHHHh
Q psy15714        180 KLNEG-LDQVFIAAVRSAVK  198 (205)
Q Consensus       180 ~~~~~-i~~~~~~i~~~~~~  198 (205)
                      ++|+| ++++|..+++.+++
T Consensus       162 k~~~n~v~~~F~~~~~~~~~  181 (182)
T cd04172         162 LQSENSVRDIFHVATLACVN  181 (182)
T ss_pred             CCCCCCHHHHHHHHHHHHhc
Confidence            99998 99999999997765

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>KOG0078|consensus

Probab=100.00  E-value=1.6e-39  Score=228.45  Aligned_cols=169  Identities=32%  Similarity=0.585  Sum_probs=160.8

Q ss_pred             cccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCc
Q psy15714         18 KSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTD   96 (205)
Q Consensus        18 ~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   96 (205)
                      .+..+.+||+++|++++|||+|+.+|.++.|...+..|++.++ .+.+..++..+.+++||++|+++|+.+...+++.++
T Consensus         7 ~~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~   86 (207)
T KOG0078|consen    7 EDYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAM   86 (207)
T ss_pred             CCcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcC
Confidence            3678899999999999999999999999999999999999998 678999999999999999999999999999999999


Q ss_pred             EEEEEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEE
Q psy15714         97 CFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYL  175 (205)
Q Consensus        97 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (205)
                      ++++|||+++..||+++. .|+..+.++. .++|.++||||+|+...+            +++.++++.+|.++++. ++
T Consensus        87 gi~LvyDitne~Sfeni~-~W~~~I~e~a~~~v~~~LvGNK~D~~~~R------------~V~~e~ge~lA~e~G~~-F~  152 (207)
T KOG0078|consen   87 GILLVYDITNEKSFENIR-NWIKNIDEHASDDVVKILVGNKCDLEEKR------------QVSKERGEALAREYGIK-FF  152 (207)
T ss_pred             eeEEEEEccchHHHHHHH-HHHHHHHhhCCCCCcEEEeeccccccccc------------cccHHHHHHHHHHhCCe-EE
Confidence            999999999999999998 6999999999 599999999999999876            99999999999999999 99


Q ss_pred             EcccCCCCCHHHHHHHHHHHHHhhc
Q psy15714        176 ECSAKLNEGLDQVFIAAVRSAVKKQ  200 (205)
Q Consensus       176 ~~Sa~~~~~i~~~~~~i~~~~~~~~  200 (205)
                      |+||++|.||++.|..+.+.+.++.
T Consensus       153 EtSAk~~~NI~eaF~~La~~i~~k~  177 (207)
T KOG0078|consen  153 ETSAKTNFNIEEAFLSLARDILQKL  177 (207)
T ss_pred             EccccCCCCHHHHHHHHHHHHHhhc
Confidence            9999999999999999999998643

>KOG0098|consensus

Probab=100.00  E-value=1.1e-39  Score=223.89  Aligned_cols=169  Identities=28%  Similarity=0.523  Sum_probs=159.5

Q ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEE
Q psy15714         20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCF   98 (205)
Q Consensus        20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   98 (205)
                      ....+|++++|+.|+|||+|+.+|++..|.+.++.|++.++ ...+.+++++++++|||++|++.|+++.+.+++.+.++
T Consensus         3 ~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Ga   82 (216)
T KOG0098|consen    3 YAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGA   82 (216)
T ss_pred             ccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcce
Confidence            45679999999999999999999999999999999999988 57899999999999999999999999999999999999


Q ss_pred             EEEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEc
Q psy15714         99 LLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLEC  177 (205)
Q Consensus        99 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (205)
                      ++|||++.++||..+. .|+..++++. +|..+++++||+||...+            .++.+|++.||++++.. ++++
T Consensus        83 lLVydit~r~sF~hL~-~wL~D~rq~~~~NmvImLiGNKsDL~~rR------------~Vs~EEGeaFA~ehgLi-fmET  148 (216)
T KOG0098|consen   83 LLVYDITRRESFNHLT-SWLEDARQHSNENMVIMLIGNKSDLEARR------------EVSKEEGEAFAREHGLI-FMET  148 (216)
T ss_pred             EEEEEccchhhHHHHH-HHHHHHHHhcCCCcEEEEEcchhhhhccc------------cccHHHHHHHHHHcCce-eehh
Confidence            9999999999999998 8999999886 899999999999999887            89999999999999888 9999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHhhccc
Q psy15714        178 SAKLNEGLDQVFIAAVRSAVKKQDK  202 (205)
Q Consensus       178 Sa~~~~~i~~~~~~i~~~~~~~~~~  202 (205)
                      ||++++|++|+|......+.++.+.
T Consensus       149 Sakt~~~VEEaF~nta~~Iy~~~q~  173 (216)
T KOG0098|consen  149 SAKTAENVEEAFINTAKEIYRKIQD  173 (216)
T ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999887553

>cd04131 Rnd Rnd subfamily

Probab=100.00  E-value=1.6e-38  Score=227.60  Aligned_cols=175  Identities=35%  Similarity=0.712  Sum_probs=151.8

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEE
Q psy15714         23 ALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCF  102 (205)
Q Consensus        23 ~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~  102 (205)
                      .+||+++|++|+|||||+++|..+.|...+.||.+..+...+.+++..+.+.|||++|++.|+.+++.+++++|++|+||
T Consensus         1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf   80 (178)
T cd04131           1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF   80 (178)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence            37999999999999999999999999999999998887777888999999999999999999999999999999999999


Q ss_pred             ECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCCC
Q psy15714        103 SIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLN  182 (205)
Q Consensus       103 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  182 (205)
                      |+++++||+++...|+..+....+++|+++||||+||...............+.++.++++++++.+++.+|+||||++|
T Consensus        81 dit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~~  160 (178)
T cd04131          81 DISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAFTS  160 (178)
T ss_pred             ECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccCcC
Confidence            99999999997558999998888899999999999996532111111111223688999999999999866999999999


Q ss_pred             CC-HHHHHHHHHHHHH
Q psy15714        183 EG-LDQVFIAAVRSAV  197 (205)
Q Consensus       183 ~~-i~~~~~~i~~~~~  197 (205)
                      +| ++++|..+++.++
T Consensus       161 ~~~v~~~F~~~~~~~~  176 (178)
T cd04131         161 EKSVRDIFHVATMACL  176 (178)
T ss_pred             CcCHHHHHHHHHHHHh
Confidence            95 9999999999765

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04121 Rab40 Rab40 subfamily

Probab=100.00  E-value=1.4e-38  Score=229.51  Aligned_cols=170  Identities=25%  Similarity=0.407  Sum_probs=153.2

Q ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEE
Q psy15714         20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCF   98 (205)
Q Consensus        20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   98 (205)
                      ....+||+++|..|+|||||+++|..+.+...+.++.+..+ ...+.+++..+.+.+||++|+++|+.+++.+++++|++
T Consensus         3 ~~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~i   82 (189)
T cd04121           3 YDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGI   82 (189)
T ss_pred             CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence            34669999999999999999999999999888878776666 45677899999999999999999999999999999999


Q ss_pred             EEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcc
Q psy15714         99 LLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECS  178 (205)
Q Consensus        99 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  178 (205)
                      |+|||++++.+|+++. .|+..+....+++|++|||||.|+...+            .++.++++.+++..+.. +++||
T Consensus        83 llVfD~t~~~Sf~~~~-~w~~~i~~~~~~~piilVGNK~DL~~~~------------~v~~~~~~~~a~~~~~~-~~e~S  148 (189)
T cd04121          83 ILVYDITNRWSFDGID-RWIKEIDEHAPGVPKILVGNRLHLAFKR------------QVATEQAQAYAERNGMT-FFEVS  148 (189)
T ss_pred             EEEEECcCHHHHHHHH-HHHHHHHHhCCCCCEEEEEECccchhcc------------CCCHHHHHHHHHHcCCE-EEEec
Confidence            9999999999999997 8999998877899999999999997654            78889999999998876 99999


Q ss_pred             cCCCCCHHHHHHHHHHHHHhhcccC
Q psy15714        179 AKLNEGLDQVFIAAVRSAVKKQDKS  203 (205)
Q Consensus       179 a~~~~~i~~~~~~i~~~~~~~~~~~  203 (205)
                      |++|.|++++|+++++.+.....++
T Consensus       149 Ak~g~~V~~~F~~l~~~i~~~~~~~  173 (189)
T cd04121         149 PLCNFNITESFTELARIVLMRHGRP  173 (189)
T ss_pred             CCCCCCHHHHHHHHHHHHHHhcCCC
Confidence            9999999999999999888765554

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=100.00  E-value=4.1e-38  Score=232.68  Aligned_cols=181  Identities=33%  Similarity=0.646  Sum_probs=156.5

Q ss_pred             ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEE
Q psy15714         19 SVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCF   98 (205)
Q Consensus        19 ~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   98 (205)
                      .....+||+++|++|+|||+|+++|..+.|...+.||++..+...+.+++..+.+.|||++|++.|+.+++.+++++|++
T Consensus         9 ~~~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~v   88 (232)
T cd04174           9 PLVMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAV   88 (232)
T ss_pred             CceeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEE
Confidence            44577999999999999999999999999999999999888877788899999999999999999999999999999999


Q ss_pred             EEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcc
Q psy15714         99 LLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECS  178 (205)
Q Consensus        99 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  178 (205)
                      |+|||++++.+|+.+...|+..+....++.|+++|+||+|+...............+.++.++++.+++.+++.+|+|||
T Consensus        89 IlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtS  168 (232)
T cd04174          89 LLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECS  168 (232)
T ss_pred             EEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEcc
Confidence            99999999999998655899999887788999999999998643211111111112478899999999999986699999


Q ss_pred             cCCCC-CHHHHHHHHHHHHHhh
Q psy15714        179 AKLNE-GLDQVFIAAVRSAVKK  199 (205)
Q Consensus       179 a~~~~-~i~~~~~~i~~~~~~~  199 (205)
                      |++|+ |++++|..++..+.++
T Consensus       169 Aktg~~~V~e~F~~~~~~~~~~  190 (232)
T cd04174         169 AFTSEKSIHSIFRSASLLCLNK  190 (232)
T ss_pred             CCcCCcCHHHHHHHHHHHHHHh
Confidence            99998 8999999999988775

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04133 Rop_like Rop subfamily

Probab=100.00  E-value=4.4e-38  Score=224.52  Aligned_cols=172  Identities=53%  Similarity=0.948  Sum_probs=151.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEEE
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFS  103 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d  103 (205)
                      +||+++|++|+|||||+.+|..+.|...+.+|.+..+...+.+++..+++.|||++|+++|+.++..++++++++|+|||
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd   81 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS   81 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEE
Confidence            68999999999999999999999999899999988877777889999999999999999999999999999999999999


Q ss_pred             CCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCCCC
Q psy15714        104 IGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNE  183 (205)
Q Consensus       104 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  183 (205)
                      +++++||+++...|+..+....+++|++|||||+|+...+..  .......+.++.++++.+++..+..+++||||++|.
T Consensus        82 ~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~--~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~  159 (176)
T cd04133          82 LISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQY--LADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQ  159 (176)
T ss_pred             cCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhh--hhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCccc
Confidence            999999999855899999877788999999999999654311  001122235889999999999988669999999999


Q ss_pred             CHHHHHHHHHHHHH
Q psy15714        184 GLDQVFIAAVRSAV  197 (205)
Q Consensus       184 ~i~~~~~~i~~~~~  197 (205)
                      |++++|..+++.+.
T Consensus       160 nV~~~F~~~~~~~~  173 (176)
T cd04133         160 NVKAVFDAAIKVVL  173 (176)
T ss_pred             CHHHHHHHHHHHHh
Confidence            99999999998764

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>KOG0080|consensus

Probab=100.00  E-value=6.8e-39  Score=214.76  Aligned_cols=165  Identities=30%  Similarity=0.534  Sum_probs=155.3

Q ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEE
Q psy15714         20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCF   98 (205)
Q Consensus        20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   98 (205)
                      ....+||+++|..|+|||||+.+|..+.|.+..+.|++.++ .+.+.++|..+++.|||++|+++|+.+.+.+++.+.++
T Consensus         8 ~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGi   87 (209)
T KOG0080|consen    8 YDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGI   87 (209)
T ss_pred             cceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCcee
Confidence            45679999999999999999999999999999888899888 67889999999999999999999999999999999999


Q ss_pred             EEEEECCCcchHHHHHHHHHHHHhhhC--CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEE
Q psy15714         99 LLCFSIGSTSSYENILSKWYPELKHHC--PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLE  176 (205)
Q Consensus        99 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (205)
                      |+|||++.+++|..+. .|+..+..+.  +++-.++|+||+|....+            .++.+++..+|+.+++. ++|
T Consensus        88 IlVYDVT~Rdtf~kLd-~W~~Eld~Ystn~diikmlVgNKiDkes~R------------~V~reEG~kfAr~h~~L-FiE  153 (209)
T KOG0080|consen   88 ILVYDVTSRDTFVKLD-IWLKELDLYSTNPDIIKMLVGNKIDKESER------------VVDREEGLKFARKHRCL-FIE  153 (209)
T ss_pred             EEEEEccchhhHHhHH-HHHHHHHhhcCCccHhHhhhcccccchhcc------------cccHHHHHHHHHhhCcE-EEE
Confidence            9999999999999995 9999999988  667778999999988765            89999999999999999 999


Q ss_pred             cccCCCCCHHHHHHHHHHHHHh
Q psy15714        177 CSAKLNEGLDQVFIAAVRSAVK  198 (205)
Q Consensus       177 ~Sa~~~~~i~~~~~~i~~~~~~  198 (205)
                      +||++.+|++..|+.++..|++
T Consensus       154 ~SAkt~~~V~~~FeelveKIi~  175 (209)
T KOG0080|consen  154 CSAKTRENVQCCFEELVEKIIE  175 (209)
T ss_pred             cchhhhccHHHHHHHHHHHHhc
Confidence            9999999999999999999886

>cd01874 Cdc42 Cdc42 subfamily

Probab=100.00  E-value=8.8e-38  Score=223.49  Aligned_cols=173  Identities=54%  Similarity=0.977  Sum_probs=152.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEEE
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFS  103 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d  103 (205)
                      +||+++|++|+|||||+++|..+.|...+.||.+..+...+.+++..+.+.|||++|++.|..++..+++++|++|+|||
T Consensus         2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d   81 (175)
T cd01874           2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFS   81 (175)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEEE
Confidence            79999999999999999999999998899999988777677888999999999999999999999889999999999999


Q ss_pred             CCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCCCC
Q psy15714        104 IGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNE  183 (205)
Q Consensus       104 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  183 (205)
                      ++++++++++...|+..+....+++|+++|+||+|+.......+.......+.++.++++.+++..+...++++||++|+
T Consensus        82 ~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~tg~  161 (175)
T cd01874          82 VVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQK  161 (175)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCCCC
Confidence            99999999997679999987777899999999999976544333333333457889999999999886669999999999


Q ss_pred             CHHHHHHHHHHHH
Q psy15714        184 GLDQVFIAAVRSA  196 (205)
Q Consensus       184 ~i~~~~~~i~~~~  196 (205)
                      |++++|+.++..+
T Consensus       162 ~v~~~f~~~~~~~  174 (175)
T cd01874         162 GLKNVFDEAILAA  174 (175)
T ss_pred             CHHHHHHHHHHHh
Confidence            9999999998754

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>KOG0394|consensus

Probab=100.00  E-value=2e-38  Score=217.19  Aligned_cols=174  Identities=29%  Similarity=0.524  Sum_probs=159.4

Q ss_pred             ccccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCC
Q psy15714         17 SKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNT   95 (205)
Q Consensus        17 ~~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~   95 (205)
                      +......+||+++|++|+|||||.++|...+|...+..|++..+ .+.+.++++.+.++||||+|+++|.++.-.+++++
T Consensus         3 ~~~K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRga   82 (210)
T KOG0394|consen    3 SLRKRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGA   82 (210)
T ss_pred             CcCcccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCC
Confidence            33456779999999999999999999999999999999999888 68999999999999999999999999999999999


Q ss_pred             cEEEEEEECCCcchHHHHHHHHHHHHhhhC-----CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcC
Q psy15714         96 DCFLLCFSIGSTSSYENILSKWYPELKHHC-----PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIK  170 (205)
Q Consensus        96 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (205)
                      |.+++|||++++.||+.+. .|.+.+..++     ...|+||+|||+|+....+          ++++...++.|++..+
T Consensus        83 DcCvlvydv~~~~Sfe~L~-~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~----------r~VS~~~Aq~WC~s~g  151 (210)
T KOG0394|consen   83 DCCVLVYDVNNPKSFENLE-NWRKEFLIQASPQDPETFPFVILGNKIDVDGGKS----------RQVSEKKAQTWCKSKG  151 (210)
T ss_pred             ceEEEEeecCChhhhccHH-HHHHHHHHhcCCCCCCcccEEEEcccccCCCCcc----------ceeeHHHHHHHHHhcC
Confidence            9999999999999999997 8999998776     3589999999999976432          2899999999999999


Q ss_pred             CceEEEcccCCCCCHHHHHHHHHHHHHhhcc
Q psy15714        171 AAEYLECSAKLNEGLDQVFIAAVRSAVKKQD  201 (205)
Q Consensus       171 ~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~  201 (205)
                      ..||+|+||+.+.|++++|+.+.+.++..+.
T Consensus       152 nipyfEtSAK~~~NV~~AFe~ia~~aL~~E~  182 (210)
T KOG0394|consen  152 NIPYFETSAKEATNVDEAFEEIARRALANED  182 (210)
T ss_pred             CceeEEecccccccHHHHHHHHHHHHHhccc
Confidence            9899999999999999999999999887653

>KOG0094|consensus

Probab=100.00  E-value=2.6e-38  Score=218.71  Aligned_cols=168  Identities=30%  Similarity=0.510  Sum_probs=155.5

Q ss_pred             cccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCc
Q psy15714         18 KSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTD   96 (205)
Q Consensus        18 ~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   96 (205)
                      ....+.+|++++|+.++||||||.+|..++|...|..|++.++ .+.+.+.+..+.+++|||+||++|+.+.+.+++++.
T Consensus        17 ~~~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~   96 (221)
T KOG0094|consen   17 GAPLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS   96 (221)
T ss_pred             CccceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCe
Confidence            3455669999999999999999999999999999999999998 678899999999999999999999999999999999


Q ss_pred             EEEEEEECCCcchHHHHHHHHHHHHhhhC-C-CCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceE
Q psy15714         97 CFLLCFSIGSTSSYENILSKWYPELKHHC-P-KVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEY  174 (205)
Q Consensus        97 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~-~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (205)
                      ++|+|||+++..||++.. .|+..+.... . ++-+++||||.||.+.+            +++.+++...|++++.. |
T Consensus        97 vaviVyDit~~~Sfe~t~-kWi~dv~~e~gs~~viI~LVGnKtDL~dkr------------qvs~eEg~~kAkel~a~-f  162 (221)
T KOG0094|consen   97 VAVIVYDITDRNSFENTS-KWIEDVRRERGSDDVIIFLVGNKTDLSDKR------------QVSIEEGERKAKELNAE-F  162 (221)
T ss_pred             EEEEEEeccccchHHHHH-HHHHHHHhccCCCceEEEEEcccccccchh------------hhhHHHHHHHHHHhCcE-E
Confidence            999999999999999987 8999998776 3 57788999999999987            99999999999999997 9


Q ss_pred             EEcccCCCCCHHHHHHHHHHHHHhh
Q psy15714        175 LECSAKLNEGLDQVFIAAVRSAVKK  199 (205)
Q Consensus       175 ~~~Sa~~~~~i~~~~~~i~~~~~~~  199 (205)
                      +++||+.|+||..+|..|...+...
T Consensus       163 ~etsak~g~NVk~lFrrIaa~l~~~  187 (221)
T KOG0094|consen  163 IETSAKAGENVKQLFRRIAAALPGM  187 (221)
T ss_pred             EEecccCCCCHHHHHHHHHHhccCc
Confidence            9999999999999999988776554

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=100.00  E-value=3e-37  Score=226.98  Aligned_cols=177  Identities=33%  Similarity=0.725  Sum_probs=154.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEEE
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFS  103 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d  103 (205)
                      +||+|+|++|+|||||+++|..+.|...+.||++..+...+.+++..+.+.|||++|++.|..+++.+++++|++++|||
T Consensus         2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfd   81 (222)
T cd04173           2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFD   81 (222)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEE
Confidence            79999999999999999999999999999999988887778899999999999999999999999999999999999999


Q ss_pred             CCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCCCC
Q psy15714        104 IGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNE  183 (205)
Q Consensus       104 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  183 (205)
                      ++++++|+++...|...+....+++|+++|+||+|+.................++.++++.+++..++.+|+||||++++
T Consensus        82 is~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~~~  161 (222)
T cd04173          82 ISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRSSE  161 (222)
T ss_pred             CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCcCC
Confidence            99999999997789988877778999999999999976432211111112235788999999999998679999999998


Q ss_pred             C-HHHHHHHHHHHHHhhc
Q psy15714        184 G-LDQVFIAAVRSAVKKQ  200 (205)
Q Consensus       184 ~-i~~~~~~i~~~~~~~~  200 (205)
                      + ++++|..++..++.+.
T Consensus       162 ~~V~~~F~~~~~~~~~~~  179 (222)
T cd04173         162 RSVRDVFHVATVASLGRG  179 (222)
T ss_pred             cCHHHHHHHHHHHHHhcc
Confidence            5 9999999999887753

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd04120 Rab12 Rab12 subfamily

Probab=100.00  E-value=2.5e-37  Score=224.92  Aligned_cols=163  Identities=28%  Similarity=0.508  Sum_probs=146.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEE
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCF  102 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~  102 (205)
                      +.|+++|..|+|||||+++|..+.|...+.+|++..+ ...+.+++..+.+.+||++|+++|+.++..+++++|++|+||
T Consensus         1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf   80 (202)
T cd04120           1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY   80 (202)
T ss_pred             CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence            3689999999999999999999999988888887666 567888999999999999999999999999999999999999


Q ss_pred             ECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCC
Q psy15714        103 SIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKL  181 (205)
Q Consensus       103 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  181 (205)
                      |+++++||+++. .|+..+.... .++|+++|+||+|+...+            .++.++++++++......+++|||++
T Consensus        81 Dvtd~~Sf~~l~-~w~~~i~~~~~~~~piilVgNK~DL~~~~------------~v~~~~~~~~a~~~~~~~~~etSAkt  147 (202)
T cd04120          81 DITKKETFDDLP-KWMKMIDKYASEDAELLLVGNKLDCETDR------------EISRQQGEKFAQQITGMRFCEASAKD  147 (202)
T ss_pred             ECcCHHHHHHHH-HHHHHHHHhCCCCCcEEEEEECccccccc------------ccCHHHHHHHHHhcCCCEEEEecCCC
Confidence            999999999997 8999888765 689999999999997644            78888899999886334499999999


Q ss_pred             CCCHHHHHHHHHHHHHhh
Q psy15714        182 NEGLDQVFIAAVRSAVKK  199 (205)
Q Consensus       182 ~~~i~~~~~~i~~~~~~~  199 (205)
                      |.||+++|.++++.+.+.
T Consensus       148 g~gV~e~F~~l~~~~~~~  165 (202)
T cd04120         148 NFNVDEIFLKLVDDILKK  165 (202)
T ss_pred             CCCHHHHHHHHHHHHHHh
Confidence            999999999999988764

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>cd04134 Rho3 Rho3 subfamily

Probab=100.00  E-value=7.4e-37  Score=221.41  Aligned_cols=176  Identities=45%  Similarity=0.788  Sum_probs=152.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEEEC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSI  104 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~  104 (205)
                      ||+++|++|+|||||+++|..+.+...+.+|.+..+...+.+++..+.+.|||++|++.|+.++..++..++++|+|||+
T Consensus         2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv   81 (189)
T cd04134           2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFSV   81 (189)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEEC
Confidence            89999999999999999999999988888998887766777888889999999999999999999999999999999999


Q ss_pred             CCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCCCCC
Q psy15714        105 GSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEG  184 (205)
Q Consensus       105 ~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  184 (205)
                      +++.+|+.+...|+..+....++.|+++|+||+|+.................++.+++..+++..+..+++++||++|+|
T Consensus        82 ~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~  161 (189)
T cd04134          82 DSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLNRG  161 (189)
T ss_pred             CCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcCCC
Confidence            99999999876799999877789999999999999776543332222333356778889999888866699999999999


Q ss_pred             HHHHHHHHHHHHHhhc
Q psy15714        185 LDQVFIAAVRSAVKKQ  200 (205)
Q Consensus       185 i~~~~~~i~~~~~~~~  200 (205)
                      ++++|+++++.++..+
T Consensus       162 v~e~f~~l~~~~~~~~  177 (189)
T cd04134         162 VNEAFTEAARVALNVR  177 (189)
T ss_pred             HHHHHHHHHHHHhccc
Confidence            9999999999988643

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd01871 Rac1_like Rac1-like subfamily

Probab=100.00  E-value=6.9e-37  Score=218.67  Aligned_cols=172  Identities=56%  Similarity=1.031  Sum_probs=149.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEEE
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFS  103 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d  103 (205)
                      +||+++|.+|+|||||+.++..+.+...+.++....+...+.+++..+++.|||++|++.|..+++.++.++|++|+|||
T Consensus         2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d   81 (174)
T cd01871           2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFS   81 (174)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEEE
Confidence            69999999999999999999999998888999877766677889999999999999999999999999999999999999


Q ss_pred             CCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCCCC
Q psy15714        104 IGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNE  183 (205)
Q Consensus       104 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  183 (205)
                      +++++++.++...|+..+....+++|+++|+||+|+.......+.......+.++.+++..+++.++..++++|||++|+
T Consensus        82 ~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~  161 (174)
T cd01871          82 LVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQK  161 (174)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccccC
Confidence            99999999987679988877777899999999999965433222222233347889999999999987569999999999


Q ss_pred             CHHHHHHHHHHH
Q psy15714        184 GLDQVFIAAVRS  195 (205)
Q Consensus       184 ~i~~~~~~i~~~  195 (205)
                      |++++|+.+++.
T Consensus       162 ~i~~~f~~l~~~  173 (174)
T cd01871         162 GLKTVFDEAIRA  173 (174)
T ss_pred             CHHHHHHHHHHh
Confidence            999999998764

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=100.00  E-value=4.3e-37  Score=219.38  Aligned_cols=166  Identities=27%  Similarity=0.514  Sum_probs=150.0

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEE
Q psy15714         23 ALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCF  102 (205)
Q Consensus        23 ~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~  102 (205)
                      .+||+++|.+|+|||||++++..+.+...+.+|.+..+...+.+++..+.+.|||+||++.|+.++..++..+|++++||
T Consensus         2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~   81 (172)
T cd04141           2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICY   81 (172)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEE
Confidence            47999999999999999999999999888889988777777888999999999999999999999999999999999999


Q ss_pred             ECCCcchHHHHHHHHHHHHhhhC--CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccC
Q psy15714        103 SIGSTSSYENILSKWYPELKHHC--PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAK  180 (205)
Q Consensus       103 d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  180 (205)
                      |++++.+++.+. .|...+.+..  +++|+++|+||+|+...+            .++.++++.+++..++. +++|||+
T Consensus        82 d~~~~~Sf~~~~-~~~~~i~~~~~~~~~piilvgNK~Dl~~~~------------~v~~~~~~~~a~~~~~~-~~e~Sa~  147 (172)
T cd04141          82 SVTDRHSFQEAS-EFKKLITRVRLTEDIPLVLVGNKVDLESQR------------QVTTEEGRNLAREFNCP-FFETSAA  147 (172)
T ss_pred             ECCchhHHHHHH-HHHHHHHHhcCCCCCCEEEEEEChhhhhcC------------ccCHHHHHHHHHHhCCE-EEEEecC
Confidence            999999999997 6888777643  689999999999997654            67888999999988875 9999999


Q ss_pred             CCCCHHHHHHHHHHHHHhhccc
Q psy15714        181 LNEGLDQVFIAAVRSAVKKQDK  202 (205)
Q Consensus       181 ~~~~i~~~~~~i~~~~~~~~~~  202 (205)
                      +|.|++++|+++++.+.+++.+
T Consensus       148 ~~~~v~~~f~~l~~~~~~~~~~  169 (172)
T cd04141         148 LRHYIDDAFHGLVREIRRKESM  169 (172)
T ss_pred             CCCCHHHHHHHHHHHHHHhccC
Confidence            9999999999999998876654

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>KOG0086|consensus

Probab=100.00  E-value=1.5e-37  Score=206.87  Aligned_cols=172  Identities=28%  Similarity=0.500  Sum_probs=160.8

Q ss_pred             cccccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCC
Q psy15714         16 KSKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPN   94 (205)
Q Consensus        16 ~~~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~   94 (205)
                      .++.....+|++++|+.|+|||+|+++|..+++.+....|++..+ +..+.+.++.++++|||++|+++|++..+.++++
T Consensus         2 msEtYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRG   81 (214)
T KOG0086|consen    2 MSETYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRG   81 (214)
T ss_pred             cchhhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhcc
Confidence            345677889999999999999999999999999999999999888 6788899999999999999999999999999999


Q ss_pred             CcEEEEEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCce
Q psy15714         95 TDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAE  173 (205)
Q Consensus        95 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (205)
                      +.+.++|||++++++|+.+. .|+...+... +++-+++++||.||...+            +++-.++-.++.+..+. 
T Consensus        82 AAGAlLVYD~TsrdsfnaLt-nWL~DaR~lAs~nIvviL~GnKkDL~~~R------------~VtflEAs~FaqEnel~-  147 (214)
T KOG0086|consen   82 AAGALLVYDITSRDSFNALT-NWLTDARTLASPNIVVILCGNKKDLDPER------------EVTFLEASRFAQENELM-  147 (214)
T ss_pred             ccceEEEEeccchhhHHHHH-HHHHHHHhhCCCcEEEEEeCChhhcChhh------------hhhHHHHHhhhccccee-
Confidence            99999999999999999998 8999998887 789999999999999887            89999999999999997 


Q ss_pred             EEEcccCCCCCHHHHHHHHHHHHHhhcc
Q psy15714        174 YLECSAKLNEGLDQVFIAAVRSAVKKQD  201 (205)
Q Consensus       174 ~~~~Sa~~~~~i~~~~~~i~~~~~~~~~  201 (205)
                      +.|+||.+|+|++|.|....+.|+++.+
T Consensus       148 flETSa~TGeNVEEaFl~c~~tIl~kIE  175 (214)
T KOG0086|consen  148 FLETSALTGENVEEAFLKCARTILNKIE  175 (214)
T ss_pred             eeeecccccccHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999988654

>KOG0087|consensus

Probab=100.00  E-value=1.2e-36  Score=213.19  Aligned_cols=172  Identities=32%  Similarity=0.503  Sum_probs=161.3

Q ss_pred             cccccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCC
Q psy15714         16 KSKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPN   94 (205)
Q Consensus        16 ~~~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~   94 (205)
                      .+....+.+||+++|++++|||-|+.||..++|.....+|++..+ ...+.++++.++.+||||+|+++|+.....+++.
T Consensus         7 ~~~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrg   86 (222)
T KOG0087|consen    7 KSEEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRG   86 (222)
T ss_pred             CccccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcc
Confidence            346678999999999999999999999999999999999999888 6789999999999999999999999999999999


Q ss_pred             CcEEEEEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCce
Q psy15714         95 TDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAE  173 (205)
Q Consensus        95 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (205)
                      +.++++|||++.+.+|+++. .|+..++.+. +++++++||||+||...+            .+..++++.+++..+.. 
T Consensus        87 AvGAllVYDITr~~Tfenv~-rWL~ELRdhad~nivimLvGNK~DL~~lr------------aV~te~~k~~Ae~~~l~-  152 (222)
T KOG0087|consen   87 AVGALLVYDITRRQTFENVE-RWLKELRDHADSNIVIMLVGNKSDLNHLR------------AVPTEDGKAFAEKEGLF-  152 (222)
T ss_pred             cceeEEEEechhHHHHHHHH-HHHHHHHhcCCCCeEEEEeecchhhhhcc------------ccchhhhHhHHHhcCce-
Confidence            99999999999999999887 9999999998 899999999999998865            88999999999999988 


Q ss_pred             EEEcccCCCCCHHHHHHHHHHHHHhhcc
Q psy15714        174 YLECSAKLNEGLDQVFIAAVRSAVKKQD  201 (205)
Q Consensus       174 ~~~~Sa~~~~~i~~~~~~i~~~~~~~~~  201 (205)
                      ++++||..+.|++++|+.++..|.+...
T Consensus       153 f~EtSAl~~tNVe~aF~~~l~~I~~~vs  180 (222)
T KOG0087|consen  153 FLETSALDATNVEKAFERVLTEIYKIVS  180 (222)
T ss_pred             EEEecccccccHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999887543

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=100.00  E-value=7.9e-36  Score=213.33  Aligned_cols=173  Identities=55%  Similarity=1.018  Sum_probs=151.5

Q ss_pred             EEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEEECC
Q psy15714         26 VTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIG  105 (205)
Q Consensus        26 i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~  105 (205)
                      |+|+|++|+|||||+++|.++.+...+.++....+...+.+++..+.+.+||+||++.|..++..+++.+|++|+|||++
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~   80 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVD   80 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECC
Confidence            58999999999999999999999888888887777777788999999999999999999999999999999999999999


Q ss_pred             CcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCCCCCH
Q psy15714        106 STSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGL  185 (205)
Q Consensus       106 ~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  185 (205)
                      ++++++++...|+..+....+++|+++|+||+|+...............+.++.+++..+++..+..+++++||++++|+
T Consensus        81 ~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v  160 (174)
T smart00174       81 SPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQEGV  160 (174)
T ss_pred             CHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCCCH
Confidence            99999998767999998877899999999999997654333322233334688899999999999866999999999999


Q ss_pred             HHHHHHHHHHHHh
Q psy15714        186 DQVFIAAVRSAVK  198 (205)
Q Consensus       186 ~~~~~~i~~~~~~  198 (205)
                      +++|+.+++.+++
T Consensus       161 ~~lf~~l~~~~~~  173 (174)
T smart00174      161 REVFEEAIRAALN  173 (174)
T ss_pred             HHHHHHHHHHhcC
Confidence            9999999988754

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>KOG0093|consensus

Probab=100.00  E-value=2.5e-36  Score=199.61  Aligned_cols=171  Identities=28%  Similarity=0.515  Sum_probs=158.5

Q ss_pred             cccccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCC
Q psy15714         16 KSKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPN   94 (205)
Q Consensus        16 ~~~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~   94 (205)
                      ....-...+|++++|+..+|||||+.++.+..|...+.+|.+..+ .+.+.-..+.++++|||++|+++|+.+...++++
T Consensus        14 ~dqnFDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRg   93 (193)
T KOG0093|consen   14 IDQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRG   93 (193)
T ss_pred             ccccccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhc
Confidence            344556678999999999999999999999999999999999888 5677777788999999999999999999999999


Q ss_pred             CcEEEEEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCce
Q psy15714         95 TDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAE  173 (205)
Q Consensus        95 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (205)
                      ++++|++||+++.+||..+. .|...+..+. .+.|+|+|+||+|+.+++            .++.+.++.++.++|.. 
T Consensus        94 amgfiLmyDitNeeSf~svq-dw~tqIktysw~naqvilvgnKCDmd~eR------------vis~e~g~~l~~~LGfe-  159 (193)
T KOG0093|consen   94 AMGFILMYDITNEESFNSVQ-DWITQIKTYSWDNAQVILVGNKCDMDSER------------VISHERGRQLADQLGFE-  159 (193)
T ss_pred             cceEEEEEecCCHHHHHHHH-HHHHHheeeeccCceEEEEecccCCccce------------eeeHHHHHHHHHHhChH-
Confidence            99999999999999999987 8999999988 899999999999999887            89999999999999998 


Q ss_pred             EEEcccCCCCCHHHHHHHHHHHHHhhc
Q psy15714        174 YLECSAKLNEGLDQVFIAAVRSAVKKQ  200 (205)
Q Consensus       174 ~~~~Sa~~~~~i~~~~~~i~~~~~~~~  200 (205)
                      +||+||+.+.|++.+|+.++..|.++.
T Consensus       160 fFEtSaK~NinVk~~Fe~lv~~Ic~km  186 (193)
T KOG0093|consen  160 FFETSAKENINVKQVFERLVDIICDKM  186 (193)
T ss_pred             HhhhcccccccHHHHHHHHHHHHHHHh
Confidence            999999999999999999999988764

>KOG0079|consensus

Probab=100.00  E-value=7.5e-37  Score=202.29  Aligned_cols=164  Identities=26%  Similarity=0.559  Sum_probs=154.6

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEE
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFL   99 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   99 (205)
                      ...++.+|+|++|+|||+|+.+|..+.|...|..|++.++ .+.+.++|..++++|||++|++.|+.+...++++.++++
T Consensus         6 dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~   85 (198)
T KOG0079|consen    6 DHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVI   85 (198)
T ss_pred             HHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEE
Confidence            4567889999999999999999999999999999999888 468899999999999999999999999999999999999


Q ss_pred             EEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEccc
Q psy15714        100 LCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSA  179 (205)
Q Consensus       100 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  179 (205)
                      +|||+++.+||.+.. .|+..++..++.+|-++||||.|++..+            .+..++++.|+...++. +||+||
T Consensus        86 vVYDVTn~ESF~Nv~-rWLeei~~ncdsv~~vLVGNK~d~~~Rr------------vV~t~dAr~~A~~mgie-~FETSa  151 (198)
T KOG0079|consen   86 VVYDVTNGESFNNVK-RWLEEIRNNCDSVPKVLVGNKNDDPERR------------VVDTEDARAFALQMGIE-LFETSA  151 (198)
T ss_pred             EEEECcchhhhHhHH-HHHHHHHhcCccccceecccCCCCccce------------eeehHHHHHHHHhcCch-heehhh
Confidence            999999999999998 9999999999999999999999999876            88999999999999999 999999


Q ss_pred             CCCCCHHHHHHHHHHHHHh
Q psy15714        180 KLNEGLDQVFIAAVRSAVK  198 (205)
Q Consensus       180 ~~~~~i~~~~~~i~~~~~~  198 (205)
                      +..+|++..|.-|.+.++.
T Consensus       152 Ke~~NvE~mF~cit~qvl~  170 (198)
T KOG0079|consen  152 KENENVEAMFHCITKQVLQ  170 (198)
T ss_pred             hhcccchHHHHHHHHHHHH
Confidence            9999999999988877665

>cd04135 Tc10 TC10 subfamily

Probab=100.00  E-value=2.6e-35  Score=210.69  Aligned_cols=173  Identities=49%  Similarity=0.880  Sum_probs=153.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEEE
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFS  103 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d  103 (205)
                      +||+++|++|+|||||++++..+.+...+.++....+...+.+++..+.+.+||+||++.|...+..+++.+|++++|||
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~   80 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFS   80 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEE
Confidence            58999999999999999999999998888888877776678888989999999999999999999999999999999999


Q ss_pred             CCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCCCC
Q psy15714        104 IGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNE  183 (205)
Q Consensus       104 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  183 (205)
                      ++++.+++++...|+..+....++.|+++|+||+|+.+.............+.++.++++.+++..+..+++++||++|.
T Consensus        81 ~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~  160 (174)
T cd04135          81 VVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQK  160 (174)
T ss_pred             CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcCC
Confidence            99999999997789998887678999999999999976554444444444557888999999999998779999999999


Q ss_pred             CHHHHHHHHHHHH
Q psy15714        184 GLDQVFIAAVRSA  196 (205)
Q Consensus       184 ~i~~~~~~i~~~~  196 (205)
                      |++++|+.+++.+
T Consensus       161 gi~~~f~~~~~~~  173 (174)
T cd04135         161 GLKTVFDEAILAI  173 (174)
T ss_pred             CHHHHHHHHHHHh
Confidence            9999999999876

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd04122 Rab14 Rab14 subfamily

Probab=100.00  E-value=2.1e-35  Score=209.61  Aligned_cols=162  Identities=30%  Similarity=0.544  Sum_probs=144.5

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEE
Q psy15714         23 ALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLC  101 (205)
Q Consensus        23 ~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v  101 (205)
                      .+||+++|++|+|||||++++..+.+...+.++.+..+ ...+.+++..+.+.+||+||++.++..+..++++++++|+|
T Consensus         2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   81 (166)
T cd04122           2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   81 (166)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence            37999999999999999999999999888888877666 35677889899999999999999999988999999999999


Q ss_pred             EECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccC
Q psy15714        102 FSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAK  180 (205)
Q Consensus       102 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  180 (205)
                      ||++++++++.+. .|+..+.... ++.|+++|+||+|+...+            .++.++++.+++..+.. ++++||+
T Consensus        82 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~-~~e~Sa~  147 (166)
T cd04122          82 YDITRRSTYNHLS-SWLTDARNLTNPNTVIFLIGNKADLEAQR------------DVTYEEAKQFADENGLL-FLECSAK  147 (166)
T ss_pred             EECCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEECccccccc------------CcCHHHHHHHHHHcCCE-EEEEECC
Confidence            9999999999987 8988876654 689999999999997654            67788899999888775 9999999


Q ss_pred             CCCCHHHHHHHHHHHHHh
Q psy15714        181 LNEGLDQVFIAAVRSAVK  198 (205)
Q Consensus       181 ~~~~i~~~~~~i~~~~~~  198 (205)
                      +|.|++++|.++.+.+.+
T Consensus       148 ~~~~i~e~f~~l~~~~~~  165 (166)
T cd04122         148 TGENVEDAFLETAKKIYQ  165 (166)
T ss_pred             CCCCHHHHHHHHHHHHhh
Confidence            999999999999988754

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=100.00  E-value=3e-35  Score=214.96  Aligned_cols=163  Identities=25%  Similarity=0.424  Sum_probs=144.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEEC-CEEEEEEEEEcCCCcccccccccCcCCCcEEEEE
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVD-NKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLC  101 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v  101 (205)
                      +||+++|++|+|||||+++|.++.+...+.+|.+..+ ...+.++ +..+.+.+||+||++.|+.+++.++++++++|+|
T Consensus         1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv   80 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV   80 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence            5899999999999999999999999888888887665 4566677 7889999999999999999999999999999999


Q ss_pred             EECCCcchHHHHHHHHHHHHhhhC-----CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEE
Q psy15714        102 FSIGSTSSYENILSKWYPELKHHC-----PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLE  176 (205)
Q Consensus       102 ~d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (205)
                      ||++++.+++.+. .|+..+....     .++|+++|+||+|+...+            .+..+++..+++..+..++++
T Consensus        81 ~D~t~~~s~~~~~-~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~------------~~~~~~~~~~~~~~~~~~~~e  147 (201)
T cd04107          81 FDVTRPSTFEAVL-KWKADLDSKVTLPNGEPIPCLLLANKCDLKKRL------------AKDGEQMDQFCKENGFIGWFE  147 (201)
T ss_pred             EECCCHHHHHHHH-HHHHHHHHhhcccCCCCCcEEEEEECCCccccc------------ccCHHHHHHHHHHcCCceEEE
Confidence            9999999999997 8988776532     578999999999997533            677889999999998666999


Q ss_pred             cccCCCCCHHHHHHHHHHHHHhh
Q psy15714        177 CSAKLNEGLDQVFIAAVRSAVKK  199 (205)
Q Consensus       177 ~Sa~~~~~i~~~~~~i~~~~~~~  199 (205)
                      +||++|+|++++|+++++.+...
T Consensus       148 ~Sak~~~~v~e~f~~l~~~l~~~  170 (201)
T cd04107         148 TSAKEGINIEEAMRFLVKNILAN  170 (201)
T ss_pred             EeCCCCCCHHHHHHHHHHHHHHh
Confidence            99999999999999999988774

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04132 Rho4_like Rho4-like subfamily

Probab=100.00  E-value=4e-35  Score=212.08  Aligned_cols=169  Identities=47%  Similarity=0.905  Sum_probs=148.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEEC-CEEEEEEEEEcCCCcccccccccCcCCCcEEEEEE
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVD-NKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCF  102 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~  102 (205)
                      +||+++|++|+|||||+++|.++.+...+.++.+..+...+... +..+.+.+||+||++.|..++..+++.+|++++||
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~   80 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICY   80 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEE
Confidence            48999999999999999999999998888888887776556665 77889999999999999999888999999999999


Q ss_pred             ECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCCC
Q psy15714        103 SIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLN  182 (205)
Q Consensus       103 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  182 (205)
                      |++++.+++++...|+..+....+++|+++|+||+|+......        .+.+..++++.+++..+..+++++||++|
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~--------~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~  152 (187)
T cd04132          81 AVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNL--------DRKVTPAQAESVAKKQGAFAYLECSAKTM  152 (187)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCccc--------cCCcCHHHHHHHHHHcCCcEEEEccCCCC
Confidence            9999999999976799888777778999999999998654211        12567888999999998856999999999


Q ss_pred             CCHHHHHHHHHHHHHhhc
Q psy15714        183 EGLDQVFIAAVRSAVKKQ  200 (205)
Q Consensus       183 ~~i~~~~~~i~~~~~~~~  200 (205)
                      .|++++|..+++.+....
T Consensus       153 ~~v~~~f~~l~~~~~~~~  170 (187)
T cd04132         153 ENVEEVFDTAIEEALKKE  170 (187)
T ss_pred             CCHHHHHHHHHHHHHhhh
Confidence            999999999999998864

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04110 Rab35 Rab35 subfamily

Probab=100.00  E-value=6.1e-35  Score=212.98  Aligned_cols=163  Identities=26%  Similarity=0.522  Sum_probs=146.1

Q ss_pred             eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEE
Q psy15714         22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLL  100 (205)
Q Consensus        22 ~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~  100 (205)
                      ..+||+++|++|+|||||+++|.++.+...+.+|.+..+ ...+.+++..+.+.|||+||++.++.++..++++++++++
T Consensus         5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iil   84 (199)
T cd04110           5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIV   84 (199)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEE
Confidence            469999999999999999999999999888888887655 4566778888899999999999999999999999999999


Q ss_pred             EEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccC
Q psy15714        101 CFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAK  180 (205)
Q Consensus       101 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  180 (205)
                      |||++++++++.+. .|+..+....+..|++||+||+|+....            .++.+++..+++..+.. ++++||+
T Consensus        85 v~D~~~~~s~~~~~-~~~~~i~~~~~~~piivVgNK~Dl~~~~------------~~~~~~~~~~~~~~~~~-~~e~Sa~  150 (199)
T cd04110          85 VYDVTNGESFVNVK-RWLQEIEQNCDDVCKVLVGNKNDDPERK------------VVETEDAYKFAGQMGIS-LFETSAK  150 (199)
T ss_pred             EEECCCHHHHHHHH-HHHHHHHHhCCCCCEEEEEECccccccc------------ccCHHHHHHHHHHcCCE-EEEEECC
Confidence            99999999999987 8999988877889999999999997653            56778888888888855 9999999


Q ss_pred             CCCCHHHHHHHHHHHHHh
Q psy15714        181 LNEGLDQVFIAAVRSAVK  198 (205)
Q Consensus       181 ~~~~i~~~~~~i~~~~~~  198 (205)
                      +|.|++++|+++.+.+..
T Consensus       151 ~~~gi~~lf~~l~~~~~~  168 (199)
T cd04110         151 ENINVEEMFNCITELVLR  168 (199)
T ss_pred             CCcCHHHHHHHHHHHHHH
Confidence            999999999999999877

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>KOG0095|consensus

Probab=100.00  E-value=4.3e-36  Score=199.16  Aligned_cols=168  Identities=27%  Similarity=0.493  Sum_probs=154.6

Q ss_pred             ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcE
Q psy15714         19 SVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDC   97 (205)
Q Consensus        19 ~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   97 (205)
                      ..+..+||+++|+.|+|||+|+++|..+-|++....|++.++ -+.+.++|.+++++|||++|+++|+++...+++.+++
T Consensus         3 dykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsaha   82 (213)
T KOG0095|consen    3 DYKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHA   82 (213)
T ss_pred             ccceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcce
Confidence            456789999999999999999999999999999999998888 5789999999999999999999999999999999999


Q ss_pred             EEEEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEE
Q psy15714         98 FLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLE  176 (205)
Q Consensus        98 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (205)
                      +|+|||++...+|+-+. +|+..++.+. ..+--++|+||+|+.+.+            .++.+.++++++....- +++
T Consensus        83 lilvydiscqpsfdclp-ewlreie~yan~kvlkilvgnk~d~~drr------------evp~qigeefs~~qdmy-fle  148 (213)
T KOG0095|consen   83 LILVYDISCQPSFDCLP-EWLREIEQYANNKVLKILVGNKIDLADRR------------EVPQQIGEEFSEAQDMY-FLE  148 (213)
T ss_pred             EEEEEecccCcchhhhH-HHHHHHHHHhhcceEEEeeccccchhhhh------------hhhHHHHHHHHHhhhhh-hhh
Confidence            99999999999999998 9999999998 566778999999999876            78888999999887766 999


Q ss_pred             cccCCCCCHHHHHHHHHHHHHhhc
Q psy15714        177 CSAKLNEGLDQVFIAAVRSAVKKQ  200 (205)
Q Consensus       177 ~Sa~~~~~i~~~~~~i~~~~~~~~  200 (205)
                      +||+..+|++.+|..+.-.+....
T Consensus       149 tsakea~nve~lf~~~a~rli~~a  172 (213)
T KOG0095|consen  149 TSAKEADNVEKLFLDLACRLISEA  172 (213)
T ss_pred             hcccchhhHHHHHHHHHHHHHHHH
Confidence            999999999999999887776643

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=100.00  E-value=1.1e-34  Score=207.28  Aligned_cols=171  Identities=49%  Similarity=0.836  Sum_probs=147.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEEE
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFS  103 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d  103 (205)
                      +|++++|++|+|||||++++..+.+...+.+|..+.+...+.+++..+.+.+||+||++.+..++..+++++|++|+|||
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d   80 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFS   80 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEE
Confidence            58999999999999999999999998888888877666678888988999999999999999999999999999999999


Q ss_pred             CCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCCCC
Q psy15714        104 IGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNE  183 (205)
Q Consensus       104 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  183 (205)
                      ++++++++.+...|+..+....+++|+++|+||+|+...............+.+..+++..+++..+..+++++||++|.
T Consensus        81 ~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~  160 (173)
T cd04130          81 VVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQK  160 (173)
T ss_pred             CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence            99999999987689988887667899999999999965432222222223347788899999999998679999999999


Q ss_pred             CHHHHHHHHHH
Q psy15714        184 GLDQVFIAAVR  194 (205)
Q Consensus       184 ~i~~~~~~i~~  194 (205)
                      |++++|+.++-
T Consensus       161 ~v~~lf~~~~~  171 (173)
T cd04130         161 NLKEVFDTAIL  171 (173)
T ss_pred             CHHHHHHHHHh
Confidence            99999998764

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>KOG0091|consensus

Probab=100.00  E-value=9.9e-36  Score=200.13  Aligned_cols=168  Identities=29%  Similarity=0.460  Sum_probs=151.8

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEE-ECCEEEEEEEEEcCCCcccccccccCcCCCcEE
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTIT-VDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCF   98 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~-~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   98 (205)
                      ..++|++|+|+.-+|||+|++.|+.+++....+||.+.++ ...+. -+|..+++++|||+|+++|+++...++++.-++
T Consensus         6 ~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgv   85 (213)
T KOG0091|consen    6 HYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGV   85 (213)
T ss_pred             EEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccce
Confidence            4689999999999999999999999999999999998887 33333 468899999999999999999999999999999


Q ss_pred             EEEEECCCcchHHHHHHHHHHHHhhhC--CCC-CEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEE
Q psy15714         99 LLCFSIGSTSSYENILSKWYPELKHHC--PKV-PIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYL  175 (205)
Q Consensus        99 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~-p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (205)
                      ++|||+++++||+.+. .|+.....+.  |.. -+++||+|+||...+            +++.++++.+++.++.. ++
T Consensus        86 llvyditnr~sfehv~-~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqR------------qVt~EEaEklAa~hgM~-FV  151 (213)
T KOG0091|consen   86 LLVYDITNRESFEHVE-NWVKEAAMATQGPDKVVFLLVGHKSDLQSQR------------QVTAEEAEKLAASHGMA-FV  151 (213)
T ss_pred             EEEEeccchhhHHHHH-HHHHHHHHhcCCCCeeEEEEeccccchhhhc------------cccHHHHHHHHHhcCce-EE
Confidence            9999999999999997 8998887766  444 456999999999887            99999999999999999 99


Q ss_pred             EcccCCCCCHHHHHHHHHHHHHhhccc
Q psy15714        176 ECSAKLNEGLDQVFIAAVRSAVKKQDK  202 (205)
Q Consensus       176 ~~Sa~~~~~i~~~~~~i~~~~~~~~~~  202 (205)
                      |+||++|.|+++.|..+.+.+....++
T Consensus       152 ETSak~g~NVeEAF~mlaqeIf~~i~q  178 (213)
T KOG0091|consen  152 ETSAKNGCNVEEAFDMLAQEIFQAIQQ  178 (213)
T ss_pred             EecccCCCcHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999998876554

>cd04144 Ras2 Ras2 subfamily

Probab=100.00  E-value=4.6e-35  Score=212.22  Aligned_cols=161  Identities=35%  Similarity=0.564  Sum_probs=142.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEEEC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSI  104 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~  104 (205)
                      ||+++|.+|+|||||+++|..+.+...+.++.+..+...+.+++..+.+++||+||+++|+.++..+++.+|++++|||+
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~   80 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSI   80 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEEC
Confidence            68999999999999999999999988888888877766777889889999999999999999999999999999999999


Q ss_pred             CCcchHHHHHHHHHHHHhhhC----CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccC
Q psy15714        105 GSTSSYENILSKWYPELKHHC----PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAK  180 (205)
Q Consensus       105 ~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  180 (205)
                      +++.+++.+. .|+..+....    .++|+++|+||+|+...+            .++.+++..+++..+.. ++++||+
T Consensus        81 ~~~~s~~~~~-~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~------------~v~~~~~~~~~~~~~~~-~~e~SAk  146 (190)
T cd04144          81 TSRSTFERVE-RFREQIQRVKDESAADVPIMIVGNKCDKVYER------------EVSTEEGAALARRLGCE-FIEASAK  146 (190)
T ss_pred             CCHHHHHHHH-HHHHHHHHHhcccCCCCCEEEEEEChhccccC------------ccCHHHHHHHHHHhCCE-EEEecCC
Confidence            9999999987 7877776543    479999999999997643            66777788888888875 9999999


Q ss_pred             CCCCHHHHHHHHHHHHHhh
Q psy15714        181 LNEGLDQVFIAAVRSAVKK  199 (205)
Q Consensus       181 ~~~~i~~~~~~i~~~~~~~  199 (205)
                      +|.|++++|+++++.+...
T Consensus       147 ~~~~v~~l~~~l~~~l~~~  165 (190)
T cd04144         147 TNVNVERAFYTLVRALRQQ  165 (190)
T ss_pred             CCCCHHHHHHHHHHHHHHh
Confidence            9999999999999988764

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>PTZ00369 Ras-like protein; Provisional

Probab=100.00  E-value=1e-34  Score=210.27  Aligned_cols=165  Identities=36%  Similarity=0.554  Sum_probs=146.8

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEE
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLL  100 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~  100 (205)
                      ...+||+++|.+|+|||||++++..+.+...+.+|.+..+...+.+++..+.+.+||+||++.|..++..+++.++++++
T Consensus         3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil   82 (189)
T PTZ00369          3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC   82 (189)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence            44689999999999999999999999998888898887777778889999999999999999999999999999999999


Q ss_pred             EEECCCcchHHHHHHHHHHHHhhhC--CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcc
Q psy15714        101 CFSIGSTSSYENILSKWYPELKHHC--PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECS  178 (205)
Q Consensus       101 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  178 (205)
                      |||++++++++.+. .|...+....  .++|+++|+||+|+...+            .+..+++..+++..+.. ++++|
T Consensus        83 v~D~s~~~s~~~~~-~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~------------~i~~~~~~~~~~~~~~~-~~e~S  148 (189)
T PTZ00369         83 VYSITSRSSFEEIA-SFREQILRVKDKDRVPMILVGNKCDLDSER------------QVSTGEGQELAKSFGIP-FLETS  148 (189)
T ss_pred             EEECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECccccccc------------ccCHHHHHHHHHHhCCE-EEEee
Confidence            99999999999987 7888776654  589999999999986543            56777888888887765 99999


Q ss_pred             cCCCCCHHHHHHHHHHHHHhh
Q psy15714        179 AKLNEGLDQVFIAAVRSAVKK  199 (205)
Q Consensus       179 a~~~~~i~~~~~~i~~~~~~~  199 (205)
                      |++|.|++++|.++++.+.+.
T Consensus       149 ak~~~gi~~~~~~l~~~l~~~  169 (189)
T PTZ00369        149 AKQRVNVDEAFYELVREIRKY  169 (189)
T ss_pred             CCCCCCHHHHHHHHHHHHHHH
Confidence            999999999999999887764

>cd04136 Rap_like Rap-like subfamily

Probab=100.00  E-value=7.4e-35  Score=206.08  Aligned_cols=160  Identities=33%  Similarity=0.545  Sum_probs=141.2

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEE
Q psy15714         23 ALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCF  102 (205)
Q Consensus        23 ~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~  102 (205)
                      .+||+++|++|+|||||++++..+.+...+.+|.+..+...+.+++..+.+.+||+||+++|+.++..++++++++++||
T Consensus         1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   80 (163)
T cd04136           1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY   80 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence            37999999999999999999999999888888887666677888999999999999999999999999999999999999


Q ss_pred             ECCCcchHHHHHHHHHHHHhhhC--CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccC
Q psy15714        103 SIGSTSSYENILSKWYPELKHHC--PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAK  180 (205)
Q Consensus       103 d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  180 (205)
                      |++++.+++.+. .|+..+....  .+.|+++|+||+|+...+            .+..+++..+++.++. +++++||+
T Consensus        81 d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~-~~~~~Sa~  146 (163)
T cd04136          81 SITSQSSFNDLQ-DLREQILRVKDTENVPMVLVGNKCDLEDER------------VVSREEGQALARQWGC-PFYETSAK  146 (163)
T ss_pred             ECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECccccccc------------eecHHHHHHHHHHcCC-eEEEecCC
Confidence            999999999987 7877776643  589999999999997643            5667778888888774 59999999


Q ss_pred             CCCCHHHHHHHHHHHH
Q psy15714        181 LNEGLDQVFIAAVRSA  196 (205)
Q Consensus       181 ~~~~i~~~~~~i~~~~  196 (205)
                      +|.|++++|+++.+.+
T Consensus       147 ~~~~v~~l~~~l~~~~  162 (163)
T cd04136         147 SKINVDEVFADLVRQI  162 (163)
T ss_pred             CCCCHHHHHHHHHHhc
Confidence            9999999999998764

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd04175 Rap1 Rap1 subgroup

Probab=100.00  E-value=7.9e-35  Score=206.29  Aligned_cols=161  Identities=31%  Similarity=0.543  Sum_probs=142.0

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEE
Q psy15714         23 ALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCF  102 (205)
Q Consensus        23 ~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~  102 (205)
                      ++||+++|.+|+|||||++++..+.+...+.+|++..+...+.+++..+.+.+||+||++.++.++..+++++|++++||
T Consensus         1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T cd04175           1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY   80 (164)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence            47999999999999999999999999888888888777777888999999999999999999999999999999999999


Q ss_pred             ECCCcchHHHHHHHHHHHHhhhC--CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccC
Q psy15714        103 SIGSTSSYENILSKWYPELKHHC--PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAK  180 (205)
Q Consensus       103 d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  180 (205)
                      |++++.+++.+. .|+..+....  .+.|+++|+||+|+....            .++.+++..+++..+.. ++++||+
T Consensus        81 d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~-~~~~Sa~  146 (164)
T cd04175          81 SITAQSTFNDLQ-DLREQILRVKDTEDVPMILVGNKCDLEDER------------VVGKEQGQNLARQWGCA-FLETSAK  146 (164)
T ss_pred             ECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECCcchhcc------------EEcHHHHHHHHHHhCCE-EEEeeCC
Confidence            999999999987 6777765533  689999999999997653            56667778888887765 9999999


Q ss_pred             CCCCHHHHHHHHHHHHH
Q psy15714        181 LNEGLDQVFIAAVRSAV  197 (205)
Q Consensus       181 ~~~~i~~~~~~i~~~~~  197 (205)
                      +|.|++++|.++.+.+.
T Consensus       147 ~~~~v~~~~~~l~~~l~  163 (164)
T cd04175         147 AKINVNEIFYDLVRQIN  163 (164)
T ss_pred             CCCCHHHHHHHHHHHhh
Confidence            99999999999987653

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd04117 Rab15 Rab15 subfamily

Probab=100.00  E-value=1.1e-34  Score=204.92  Aligned_cols=158  Identities=32%  Similarity=0.565  Sum_probs=142.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEE
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCF  102 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~  102 (205)
                      +||+++|++|+|||||++++..+.+.+.+.+|.+..+ ...+.+++..+.+.+||++|++.+..++..++..+|++++||
T Consensus         1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04117           1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY   80 (161)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence            4899999999999999999999999888888887665 466778888899999999999999999888999999999999


Q ss_pred             ECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCC
Q psy15714        103 SIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKL  181 (205)
Q Consensus       103 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  181 (205)
                      |++++++++.+. .|+..+.... .+.|+++|+||.|+...+            .++.+++..+++.++.. ++++||++
T Consensus        81 d~~~~~sf~~~~-~~~~~~~~~~~~~~~iilvgnK~Dl~~~~------------~v~~~~~~~~~~~~~~~-~~e~Sa~~  146 (161)
T cd04117          81 DISSERSYQHIM-KWVSDVDEYAPEGVQKILIGNKADEEQKR------------QVGDEQGNKLAKEYGMD-FFETSACT  146 (161)
T ss_pred             ECCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEECccccccc------------CCCHHHHHHHHHHcCCE-EEEEeCCC
Confidence            999999999997 7999887766 479999999999997654            67888999999988865 99999999


Q ss_pred             CCCHHHHHHHHHHH
Q psy15714        182 NEGLDQVFIAAVRS  195 (205)
Q Consensus       182 ~~~i~~~~~~i~~~  195 (205)
                      |.|++++|.+|.+.
T Consensus       147 ~~~v~~~f~~l~~~  160 (161)
T cd04117         147 NSNIKESFTRLTEL  160 (161)
T ss_pred             CCCHHHHHHHHHhh
Confidence            99999999999864

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=100.00  E-value=1.7e-34  Score=205.17  Aligned_cols=163  Identities=30%  Similarity=0.580  Sum_probs=145.5

Q ss_pred             eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEE
Q psy15714         22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLL  100 (205)
Q Consensus        22 ~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~  100 (205)
                      ..+||+++|++|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++++|++++
T Consensus         2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~   81 (167)
T cd01867           2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL   81 (167)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence            358999999999999999999999999988888887766 3567788888999999999999999888889999999999


Q ss_pred             EEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEccc
Q psy15714        101 CFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSA  179 (205)
Q Consensus       101 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  179 (205)
                      |||++++.++..+. .|+..+.... .++|+++|+||+|+...+            .+..+++..+++.++.. ++++||
T Consensus        82 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~-~~~~Sa  147 (167)
T cd01867          82 VYDITDEKSFENIR-NWMRNIEEHASEDVERMLVGNKCDMEEKR------------VVSKEEGEALADEYGIK-FLETSA  147 (167)
T ss_pred             EEECcCHHHHHhHH-HHHHHHHHhCCCCCcEEEEEECccccccc------------CCCHHHHHHHHHHcCCE-EEEEeC
Confidence            99999999999987 7999888765 689999999999998653            56778888888888875 999999


Q ss_pred             CCCCCHHHHHHHHHHHHHh
Q psy15714        180 KLNEGLDQVFIAAVRSAVK  198 (205)
Q Consensus       180 ~~~~~i~~~~~~i~~~~~~  198 (205)
                      +++.|++++|+++.+.+..
T Consensus       148 ~~~~~v~~~~~~i~~~~~~  166 (167)
T cd01867         148 KANINVEEAFFTLAKDIKK  166 (167)
T ss_pred             CCCCCHHHHHHHHHHHHHh
Confidence            9999999999999998864

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>KOG0393|consensus

Probab=100.00  E-value=2.1e-35  Score=208.63  Aligned_cols=180  Identities=56%  Similarity=1.003  Sum_probs=165.4

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEEC-CEEEEEEEEEcCCCcccccccccCcCCCcEEE
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVD-NKTYDVTLWDTAGQEDYERLRPMSYPNTDCFL   99 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   99 (205)
                      ...+|++|+|+..+|||+|+-.+..+.|+..|.||..+.+...+.++ ++.+.+.+|||+|+++|..+++..++++|+++
T Consensus         2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl   81 (198)
T KOG0393|consen    2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL   81 (198)
T ss_pred             ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE
Confidence            35689999999999999999999999999999999999999999995 99999999999999999999988999999999


Q ss_pred             EEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEccc
Q psy15714        100 LCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSA  179 (205)
Q Consensus       100 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  179 (205)
                      ++|++.++.|++++.+.|+..++++++++|+++||+|.||..+....+.........++.+++..++++.+...|+||||
T Consensus        82 ~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcSa  161 (198)
T KOG0393|consen   82 LCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECSA  161 (198)
T ss_pred             EEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeehh
Confidence            99999999999999999999999999999999999999999655444444444566899999999999999888999999


Q ss_pred             CCCCCHHHHHHHHHHHHHhhc
Q psy15714        180 KLNEGLDQVFIAAVRSAVKKQ  200 (205)
Q Consensus       180 ~~~~~i~~~~~~i~~~~~~~~  200 (205)
                      +++.|++++|+..+..++...
T Consensus       162 ~tq~~v~~vF~~a~~~~l~~~  182 (198)
T KOG0393|consen  162 LTQKGVKEVFDEAIRAALRPP  182 (198)
T ss_pred             hhhCCcHHHHHHHHHHHhccc
Confidence            999999999999999998753

>cd04112 Rab26 Rab26 subfamily

Probab=100.00  E-value=2.3e-34  Score=208.74  Aligned_cols=162  Identities=31%  Similarity=0.600  Sum_probs=142.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCC-CCcCccccccc-eeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEE
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTENKFPT-DYVPTVFDNYP-DTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLC  101 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~~~~~-~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v  101 (205)
                      +||+++|++|+|||||++++..+.+.. .+.++.+..+. ..+.+++..+.+.|||+||++.+...+..+++.+|++|+|
T Consensus         1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v   80 (191)
T cd04112           1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL   80 (191)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence            589999999999999999999998853 56777766653 4677889999999999999999998888899999999999


Q ss_pred             EECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccC
Q psy15714        102 FSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAK  180 (205)
Q Consensus       102 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  180 (205)
                      ||++++++++++. .|+..+.... .++|+++|+||+|+...+            .+..+++..+++.++.. ++++||+
T Consensus        81 ~D~~~~~s~~~~~-~~~~~i~~~~~~~~piiiv~NK~Dl~~~~------------~~~~~~~~~l~~~~~~~-~~e~Sa~  146 (191)
T cd04112          81 YDITNKASFDNIR-AWLTEIKEYAQEDVVIMLLGNKADMSGER------------VVKREDGERLAKEYGVP-FMETSAK  146 (191)
T ss_pred             EECCCHHHHHHHH-HHHHHHHHhCCCCCcEEEEEEcccchhcc------------ccCHHHHHHHHHHcCCe-EEEEeCC
Confidence            9999999999987 7998888776 589999999999997543            66777888888888865 9999999


Q ss_pred             CCCCHHHHHHHHHHHHHhh
Q psy15714        181 LNEGLDQVFIAAVRSAVKK  199 (205)
Q Consensus       181 ~~~~i~~~~~~i~~~~~~~  199 (205)
                      +|+|++++|.++.+.+...
T Consensus       147 ~~~~v~~l~~~l~~~~~~~  165 (191)
T cd04112         147 TGLNVELAFTAVAKELKHR  165 (191)
T ss_pred             CCCCHHHHHHHHHHHHHHh
Confidence            9999999999999998774

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd01865 Rab3 Rab3 subfamily

Probab=100.00  E-value=2.4e-34  Score=204.00  Aligned_cols=161  Identities=29%  Similarity=0.547  Sum_probs=142.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEE
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCF  102 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~  102 (205)
                      +||+++|++|+|||||++++.++++...+.++.+..+ ...+..++..+.+.+||++|++++...+..+++++|++++||
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~   81 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY   81 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence            7999999999999999999999999888888887655 345667788899999999999999999999999999999999


Q ss_pred             ECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCC
Q psy15714        103 SIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKL  181 (205)
Q Consensus       103 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  181 (205)
                      |++++++++.+. .|+..+.... .+.|+++|+||+|+...+            .+..+++..+++..+.. ++++||++
T Consensus        82 d~~~~~s~~~~~-~~~~~i~~~~~~~~piivv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~-~~~~Sa~~  147 (165)
T cd01865          82 DITNEESFNAVQ-DWSTQIKTYSWDNAQVILVGNKCDMEDER------------VVSSERGRQLADQLGFE-FFEASAKE  147 (165)
T ss_pred             ECCCHHHHHHHH-HHHHHHHHhCCCCCCEEEEEECcccCccc------------ccCHHHHHHHHHHcCCE-EEEEECCC
Confidence            999999999987 7999887766 589999999999997654            56677788888888775 99999999


Q ss_pred             CCCHHHHHHHHHHHHHh
Q psy15714        182 NEGLDQVFIAAVRSAVK  198 (205)
Q Consensus       182 ~~~i~~~~~~i~~~~~~  198 (205)
                      |.|++++|+++.+.+..
T Consensus       148 ~~gv~~l~~~l~~~~~~  164 (165)
T cd01865         148 NINVKQVFERLVDIICD  164 (165)
T ss_pred             CCCHHHHHHHHHHHHHh
Confidence            99999999999987654

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd01870 RhoA_like RhoA-like subfamily

Probab=100.00  E-value=6.3e-34  Score=203.67  Aligned_cols=173  Identities=54%  Similarity=0.948  Sum_probs=148.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEEE
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFS  103 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d  103 (205)
                      .||+++|++|+|||||++++..+.+...+.++.+..+...+.+++..+.+.+||++|++.|...+...+.++|++++|||
T Consensus         2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~   81 (175)
T cd01870           2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFS   81 (175)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEEE
Confidence            58999999999999999999999998888888887776677888989999999999999999988888999999999999


Q ss_pred             CCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCCCC
Q psy15714        104 IGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNE  183 (205)
Q Consensus       104 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  183 (205)
                      ++++++++.+...|+..+.+...++|+++|+||+|+.................+...+++.+++..+..++++|||++|.
T Consensus        82 ~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~  161 (175)
T cd01870          82 IDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKTKE  161 (175)
T ss_pred             CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccccCc
Confidence            99999999987679998887767899999999999876543322222222335667889999998887779999999999


Q ss_pred             CHHHHHHHHHHHH
Q psy15714        184 GLDQVFIAAVRSA  196 (205)
Q Consensus       184 ~i~~~~~~i~~~~  196 (205)
                      |++++|+++.+.+
T Consensus       162 ~v~~lf~~l~~~~  174 (175)
T cd01870         162 GVREVFEMATRAA  174 (175)
T ss_pred             CHHHHHHHHHHHh
Confidence            9999999998765

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd04127 Rab27A Rab27a subfamily

Probab=100.00  E-value=2.3e-34  Score=206.88  Aligned_cols=164  Identities=30%  Similarity=0.510  Sum_probs=143.4

Q ss_pred             eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccc-eeEEEC----------CEEEEEEEEEcCCCccccccccc
Q psy15714         22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYP-DTITVD----------NKTYDVTLWDTAGQEDYERLRPM   90 (205)
Q Consensus        22 ~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~-~~~~~~----------~~~~~~~i~D~~g~~~~~~~~~~   90 (205)
                      +.+||+++|++|+|||||++++..+.+...+.+|.+..+. ..+.+.          +..+.+.|||+||++.+...+..
T Consensus         3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~   82 (180)
T cd04127           3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA   82 (180)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence            5699999999999999999999999999888888876553 334333          45789999999999999999999


Q ss_pred             CcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhC--CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHH
Q psy15714         91 SYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC--PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRK  168 (205)
Q Consensus        91 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (205)
                      +++++|++++|||+++++++.++. .|+..+....  ++.|+++|+||+|+...+            .++.+++..+++.
T Consensus        83 ~~~~~~~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~------------~v~~~~~~~~~~~  149 (180)
T cd04127          83 FFRDAMGFLLIFDLTNEQSFLNVR-NWMSQLQTHAYCENPDIVLCGNKADLEDQR------------QVSEEQAKALADK  149 (180)
T ss_pred             HhCCCCEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCcEEEEEeCccchhcC------------ccCHHHHHHHHHH
Confidence            999999999999999999999997 8999887654  689999999999997654            6777889999999


Q ss_pred             cCCceEEEcccCCCCCHHHHHHHHHHHHHhh
Q psy15714        169 IKAAEYLECSAKLNEGLDQVFIAAVRSAVKK  199 (205)
Q Consensus       169 ~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  199 (205)
                      .+.. ++++||++|.|++++|+++.+.+.++
T Consensus       150 ~~~~-~~e~Sak~~~~v~~l~~~l~~~~~~~  179 (180)
T cd04127         150 YGIP-YFETSAATGTNVEKAVERLLDLVMKR  179 (180)
T ss_pred             cCCe-EEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence            8875 99999999999999999999887653

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=100.00  E-value=3.7e-34  Score=211.39  Aligned_cols=163  Identities=30%  Similarity=0.519  Sum_probs=142.0

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEE
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFL   99 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   99 (205)
                      ...+||+++|.+|+|||||++++..+.+...+.+|.+..+ ...+..++..+.+.+||++|++.|..++..+++.++++|
T Consensus        11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i   90 (219)
T PLN03071         11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (219)
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence            6679999999999999999999999999888889887665 445667778899999999999999999999999999999


Q ss_pred             EEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEccc
Q psy15714        100 LCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSA  179 (205)
Q Consensus       100 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  179 (205)
                      +|||++++.+++.+. .|+..+.+..+++|+++|+||+|+...             .+..++. .+++..+.. ++++||
T Consensus        91 lvfD~~~~~s~~~i~-~w~~~i~~~~~~~piilvgNK~Dl~~~-------------~v~~~~~-~~~~~~~~~-~~e~SA  154 (219)
T PLN03071         91 IMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNR-------------QVKAKQV-TFHRKKNLQ-YYEISA  154 (219)
T ss_pred             EEEeCCCHHHHHHHH-HHHHHHHHhCCCCcEEEEEEchhhhhc-------------cCCHHHH-HHHHhcCCE-EEEcCC
Confidence            999999999999987 899999887789999999999998643             3334444 566666665 999999


Q ss_pred             CCCCCHHHHHHHHHHHHHhh
Q psy15714        180 KLNEGLDQVFIAAVRSAVKK  199 (205)
Q Consensus       180 ~~~~~i~~~~~~i~~~~~~~  199 (205)
                      ++|.|++++|.++.+.+...
T Consensus       155 k~~~~i~~~f~~l~~~~~~~  174 (219)
T PLN03071        155 KSNYNFEKPFLYLARKLAGD  174 (219)
T ss_pred             CCCCCHHHHHHHHHHHHHcC
Confidence            99999999999999988754

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=100.00  E-value=4.5e-34  Score=202.79  Aligned_cols=162  Identities=28%  Similarity=0.580  Sum_probs=144.2

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEE
Q psy15714         23 ALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLC  101 (205)
Q Consensus        23 ~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v  101 (205)
                      .+||+++|++|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus         2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v   81 (166)
T cd01869           2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV   81 (166)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence            47999999999999999999999999887778777655 45677888889999999999999999888999999999999


Q ss_pred             EECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccC
Q psy15714        102 FSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAK  180 (205)
Q Consensus       102 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  180 (205)
                      ||+++++++..+. .|+..+.... ++.|+++|+||+|+....            .+..+++..+++..+.. ++++||+
T Consensus        82 ~d~~~~~s~~~l~-~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~-~~~~Sa~  147 (166)
T cd01869          82 YDVTDQESFNNVK-QWLQEIDRYASENVNKLLVGNKCDLTDKR------------VVDYSEAQEFADELGIP-FLETSAK  147 (166)
T ss_pred             EECcCHHHHHhHH-HHHHHHHHhCCCCCcEEEEEEChhccccc------------CCCHHHHHHHHHHcCCe-EEEEECC
Confidence            9999999999998 7999888766 679999999999987654            67778889999888875 9999999


Q ss_pred             CCCCHHHHHHHHHHHHHh
Q psy15714        181 LNEGLDQVFIAAVRSAVK  198 (205)
Q Consensus       181 ~~~~i~~~~~~i~~~~~~  198 (205)
                      +|+|++++|.++.+.+.+
T Consensus       148 ~~~~v~~~~~~i~~~~~~  165 (166)
T cd01869         148 NATNVEQAFMTMAREIKK  165 (166)
T ss_pred             CCcCHHHHHHHHHHHHHh
Confidence            999999999999988753

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>KOG0088|consensus

Probab=100.00  E-value=3.9e-35  Score=196.38  Aligned_cols=167  Identities=29%  Similarity=0.546  Sum_probs=155.7

Q ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEE
Q psy15714         20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCF   98 (205)
Q Consensus        20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   98 (205)
                      ....||++++|...+|||||+-+|..++|.....+|....+ .+.+.+.+....+.|||++|+++|+.+-+-++++.+++
T Consensus        10 ~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGa   89 (218)
T KOG0088|consen   10 KSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGA   89 (218)
T ss_pred             CceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCce
Confidence            45779999999999999999999999999999999987777 57788888999999999999999999999999999999


Q ss_pred             EEEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEc
Q psy15714         99 LLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLEC  177 (205)
Q Consensus        99 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (205)
                      ++|||++|+.||+.+. .|...++... ..+-++||+||+||...+            .++.+++..+++..+.. |+++
T Consensus        90 lLVyDITDrdSFqKVK-nWV~Elr~mlGnei~l~IVGNKiDLEeeR------------~Vt~qeAe~YAesvGA~-y~eT  155 (218)
T KOG0088|consen   90 LLVYDITDRDSFQKVK-NWVLELRTMLGNEIELLIVGNKIDLEEER------------QVTRQEAEAYAESVGAL-YMET  155 (218)
T ss_pred             EEEEeccchHHHHHHH-HHHHHHHHHhCCeeEEEEecCcccHHHhh------------hhhHHHHHHHHHhhchh-heec
Confidence            9999999999999998 8999998877 678899999999999887            89999999999999999 9999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHhhc
Q psy15714        178 SAKLNEGLDQVFIAAVRSAVKKQ  200 (205)
Q Consensus       178 Sa~~~~~i~~~~~~i~~~~~~~~  200 (205)
                      ||+.+.||.++|+.+.+.+++..
T Consensus       156 SAk~N~Gi~elFe~Lt~~MiE~~  178 (218)
T KOG0088|consen  156 SAKDNVGISELFESLTAKMIEHS  178 (218)
T ss_pred             ccccccCHHHHHHHHHHHHHHHh
Confidence            99999999999999999988753

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=100.00  E-value=3.7e-34  Score=202.35  Aligned_cols=159  Identities=34%  Similarity=0.682  Sum_probs=147.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEEE
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFS  103 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d  103 (205)
                      ||+++|++++|||||+++|.++.+.+.+.+|.+... ...+.+++..+.+.+||++|++.|..++..+++++|++|+|||
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd   80 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD   80 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            799999999999999999999999999999884444 6788899999999999999999999988889999999999999


Q ss_pred             CCCcchHHHHHHHHHHHHhhhCC-CCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCCC
Q psy15714        104 IGSTSSYENILSKWYPELKHHCP-KVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLN  182 (205)
Q Consensus       104 ~~~~~s~~~~~~~~~~~~~~~~~-~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  182 (205)
                      +++++|++.+. .|+..+....+ +.|++|++||.|+...+            .++.++++.+++.++ .+|+++||+++
T Consensus        81 ~~~~~S~~~~~-~~~~~i~~~~~~~~~iivvg~K~D~~~~~------------~v~~~~~~~~~~~~~-~~~~e~Sa~~~  146 (162)
T PF00071_consen   81 VTDEESFENLK-KWLEEIQKYKPEDIPIIVVGNKSDLSDER------------EVSVEEAQEFAKELG-VPYFEVSAKNG  146 (162)
T ss_dssp             TTBHHHHHTHH-HHHHHHHHHSTTTSEEEEEEETTTGGGGS------------SSCHHHHHHHHHHTT-SEEEEEBTTTT
T ss_pred             ccccccccccc-cccccccccccccccceeeeccccccccc------------cchhhHHHHHHHHhC-CEEEEEECCCC
Confidence            99999999998 99999999886 79999999999998744            889999999999999 55999999999


Q ss_pred             CCHHHHHHHHHHHHH
Q psy15714        183 EGLDQVFIAAVRSAV  197 (205)
Q Consensus       183 ~~i~~~~~~i~~~~~  197 (205)
                      .|+.++|..+++.+.
T Consensus       147 ~~v~~~f~~~i~~i~  161 (162)
T PF00071_consen  147 ENVKEIFQELIRKIL  161 (162)
T ss_dssp             TTHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHh
Confidence            999999999999875

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd04176 Rap2 Rap2 subgroup

Probab=100.00  E-value=5.1e-34  Score=201.91  Aligned_cols=160  Identities=31%  Similarity=0.514  Sum_probs=140.2

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEE
Q psy15714         23 ALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCF  102 (205)
Q Consensus        23 ~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~  102 (205)
                      ++||+++|.+|+|||||++++..+.+.+.+.++....+...+.+++..+.+.|||+||+++|..++..+++++|++++||
T Consensus         1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~   80 (163)
T cd04176           1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY   80 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence            37999999999999999999999999888888877666667888898899999999999999999999999999999999


Q ss_pred             ECCCcchHHHHHHHHHHHHhhhC--CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccC
Q psy15714        103 SIGSTSSYENILSKWYPELKHHC--PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAK  180 (205)
Q Consensus       103 d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  180 (205)
                      |++++++++++. .|+..+....  .++|+++|+||+|+....            .+..+++..+++..+. +++++||+
T Consensus        81 d~~~~~s~~~~~-~~~~~~~~~~~~~~~piviv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~-~~~~~Sa~  146 (163)
T cd04176          81 SLVNQQTFQDIK-PMRDQIVRVKGYEKVPIILVGNKVDLESER------------EVSSAEGRALAEEWGC-PFMETSAK  146 (163)
T ss_pred             ECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECccchhcC------------ccCHHHHHHHHHHhCC-EEEEecCC
Confidence            999999999987 7888777654  689999999999986543            5566677888877776 49999999


Q ss_pred             CCCCHHHHHHHHHHHH
Q psy15714        181 LNEGLDQVFIAAVRSA  196 (205)
Q Consensus       181 ~~~~i~~~~~~i~~~~  196 (205)
                      ++.|++++|.++.+.+
T Consensus       147 ~~~~v~~l~~~l~~~l  162 (163)
T cd04176         147 SKTMVNELFAEIVRQM  162 (163)
T ss_pred             CCCCHHHHHHHHHHhc
Confidence            9999999999998754

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd01873 RhoBTB RhoBTB subfamily

Probab=100.00  E-value=9.7e-34  Score=205.35  Aligned_cols=170  Identities=36%  Similarity=0.668  Sum_probs=134.3

Q ss_pred             eeEEEEECCCCCCHHHHHH-HHhcC-----CCCCCCcCccc--ccccee--------EEECCEEEEEEEEEcCCCccccc
Q psy15714         23 ALKVTTVGDGMVGKTCLLI-THTEN-----KFPTDYVPTVF--DNYPDT--------ITVDNKTYDVTLWDTAGQEDYER   86 (205)
Q Consensus        23 ~~ki~v~G~~~~GKstli~-~~~~~-----~~~~~~~~t~~--~~~~~~--------~~~~~~~~~~~i~D~~g~~~~~~   86 (205)
                      .+||+++|+.|+|||||+. ++.++     .+...+.||++  +.+...        +.+++..+.+.||||+|++.  .
T Consensus         2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~   79 (195)
T cd01873           2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K   79 (195)
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence            4799999999999999995 66544     34566778875  223222        25789999999999999975  3


Q ss_pred             ccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhh-------hhhhccccccH
Q psy15714         87 LRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDK-------KKAAEVDLVST  159 (205)
Q Consensus        87 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~-------~~~~~~~~~~~  159 (205)
                      ....+++++|++++|||++++.|++++...|+..+....+++|+++|+||+||.........       ......+.++.
T Consensus        80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~  159 (195)
T cd01873          80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPP  159 (195)
T ss_pred             hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhcccccccccccCCccCH
Confidence            45668999999999999999999999975799999877778999999999999653110000       00111357899


Q ss_pred             HHHHHHHHHcCCceEEEcccCCCCCHHHHHHHHHHH
Q psy15714        160 SQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRS  195 (205)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  195 (205)
                      ++++.+++.+++. |+||||++|+|++++|+.+++.
T Consensus       160 ~e~~~~a~~~~~~-~~E~SAkt~~~V~e~F~~~~~~  194 (195)
T cd01873         160 ETGRAVAKELGIP-YYETSVVTQFGVKDVFDNAIRA  194 (195)
T ss_pred             HHHHHHHHHhCCE-EEEcCCCCCCCHHHHHHHHHHh
Confidence            9999999999985 9999999999999999999864

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>cd04126 Rab20 Rab20 subfamily

Probab=100.00  E-value=6.7e-34  Score=209.14  Aligned_cols=171  Identities=25%  Similarity=0.366  Sum_probs=134.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEEE
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFS  103 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d  103 (205)
                      +||+++|.+++|||||+++|..+.|.. +.+|++..+..   .....+.+.|||++|++.|+.++..+++.+|++|+|||
T Consensus         1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~---~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~D   76 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYL---KQWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYD   76 (220)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEE---EEeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEE
Confidence            589999999999999999999999865 46666554321   11245789999999999999999999999999999999


Q ss_pred             CCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhh------h-hhhhhccccccHHHHHHHHHHcCC-----
Q psy15714        104 IGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTI------D-KKKAAEVDLVSTSQGKKMRRKIKA-----  171 (205)
Q Consensus       104 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~~~-----  171 (205)
                      ++++.+|.++...|.........++|+++|+||+|+.......      . .......+.++.++++.++++.+.     
T Consensus        77 vt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~  156 (220)
T cd04126          77 VSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLD  156 (220)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCcccccc
Confidence            9999999999844444443333689999999999997521100      0 000111347899999999998762     


Q ss_pred             --------ceEEEcccCCCCCHHHHHHHHHHHHHh
Q psy15714        172 --------AEYLECSAKLNEGLDQVFIAAVRSAVK  198 (205)
Q Consensus       172 --------~~~~~~Sa~~~~~i~~~~~~i~~~~~~  198 (205)
                              .+|+||||++|.||+++|..+++.+..
T Consensus       157 ~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~  191 (220)
T cd04126         157 EDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLP  191 (220)
T ss_pred             ccccccccceEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence                    359999999999999999999988774

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=100.00  E-value=7.2e-34  Score=202.40  Aligned_cols=166  Identities=27%  Similarity=0.503  Sum_probs=142.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEEE
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFS  103 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d  103 (205)
                      ||+++|.+|+|||||++++..+.|...+.+|.+..+ ...+.+++..+.+.+||+||+++|..++..+++.+|++++|||
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   81 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD   81 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence            799999999999999999999999999999988776 4667788989999999999999999999999999999999999


Q ss_pred             CCCcchHHHHHHHHHHHHhhh-C-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCC
Q psy15714        104 IGSTSSYENILSKWYPELKHH-C-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKL  181 (205)
Q Consensus       104 ~~~~~s~~~~~~~~~~~~~~~-~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  181 (205)
                      +++++++..+. .|+..+.+. . .+.|+++|+||.|+.....          .....+++..+++.++.. ++++||++
T Consensus        82 ~~~~~s~~~~~-~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~-~~e~Sa~~  149 (170)
T cd04108          82 LTDVASLEHTR-QWLEDALKENDPSSVLLFLVGTKKDLSSPAQ----------YALMEQDAIKLAAEMQAE-YWSVSALS  149 (170)
T ss_pred             CcCHHHHHHHH-HHHHHHHHhcCCCCCeEEEEEEChhcCcccc----------ccccHHHHHHHHHHcCCe-EEEEECCC
Confidence            99999999987 799887554 3 3578999999999865431          023466778888888775 99999999


Q ss_pred             CCCHHHHHHHHHHHHHhhcccCCC
Q psy15714        182 NEGLDQVFIAAVRSAVKKQDKSCC  205 (205)
Q Consensus       182 ~~~i~~~~~~i~~~~~~~~~~~~~  205 (205)
                      |.|++++|+.+.+.+.   +-+||
T Consensus       150 g~~v~~lf~~l~~~~~---~~~~~  170 (170)
T cd04108         150 GENVREFFFRVAALTF---ELGCC  170 (170)
T ss_pred             CCCHHHHHHHHHHHHH---HccCC
Confidence            9999999999988883   34566

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=100.00  E-value=6.4e-34  Score=201.54  Aligned_cols=161  Identities=37%  Similarity=0.589  Sum_probs=141.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEEE
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFS  103 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d  103 (205)
                      +||+++|++|+|||||++++.++.+...+.++....+.....+++..+.+.+||+||++++...+..+++.+|++++|||
T Consensus         1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d   80 (164)
T smart00173        1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYS   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEE
Confidence            48999999999999999999999998888888877777777888889999999999999999999899999999999999


Q ss_pred             CCCcchHHHHHHHHHHHHhhhC--CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCC
Q psy15714        104 IGSTSSYENILSKWYPELKHHC--PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKL  181 (205)
Q Consensus       104 ~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  181 (205)
                      ++++++++.+. .|...+....  .++|+++|+||+|+...+            .+..+++..+++..+.. ++++||++
T Consensus        81 ~~~~~s~~~~~-~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~-~~~~Sa~~  146 (164)
T smart00173       81 ITDRQSFEEIK-KFREQILRVKDRDDVPIVLVGNKCDLESER------------VVSTEEGKELARQWGCP-FLETSAKE  146 (164)
T ss_pred             CCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECccccccc------------eEcHHHHHHHHHHcCCE-EEEeecCC
Confidence            99999999987 6777665543  479999999999997653            56677888888888755 99999999


Q ss_pred             CCCHHHHHHHHHHHHHh
Q psy15714        182 NEGLDQVFIAAVRSAVK  198 (205)
Q Consensus       182 ~~~i~~~~~~i~~~~~~  198 (205)
                      +.|++++|+++++.+..
T Consensus       147 ~~~i~~l~~~l~~~~~~  163 (164)
T smart00173      147 RVNVDEAFYDLVREIRK  163 (164)
T ss_pred             CCCHHHHHHHHHHHHhh
Confidence            99999999999987653

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd04128 Spg1 Spg1p

Probab=100.00  E-value=8.9e-34  Score=203.83  Aligned_cols=165  Identities=27%  Similarity=0.520  Sum_probs=139.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEE
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCF  102 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~  102 (205)
                      +||+++|..|+|||||+++|..+.|...+.+|.+..+ .+.+.+++..+.+.|||++|++.|+.++..+++++|++++||
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~   80 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF   80 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence            5899999999999999999999999988999988766 467888999999999999999999999999999999999999


Q ss_pred             ECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCC
Q psy15714        103 SIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKL  181 (205)
Q Consensus       103 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  181 (205)
                      |++++.+++++. .|+..+.+.. ...| ++|+||+|+........       +....++++.+++..+.. ++++||++
T Consensus        81 D~t~~~s~~~i~-~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~-------~~~~~~~~~~~a~~~~~~-~~e~SAk~  150 (182)
T cd04128          81 DLTRKSTLNSIK-EWYRQARGFNKTAIP-ILVGTKYDLFADLPPEE-------QEEITKQARKYAKAMKAP-LIFCSTSH  150 (182)
T ss_pred             ECcCHHHHHHHH-HHHHHHHHhCCCCCE-EEEEEchhccccccchh-------hhhhHHHHHHHHHHcCCE-EEEEeCCC
Confidence            999999999997 8999887765 3566 68899999964211000       012246778888888865 99999999


Q ss_pred             CCCHHHHHHHHHHHHHh
Q psy15714        182 NEGLDQVFIAAVRSAVK  198 (205)
Q Consensus       182 ~~~i~~~~~~i~~~~~~  198 (205)
                      |+|++++|+++.+.+..
T Consensus       151 g~~v~~lf~~l~~~l~~  167 (182)
T cd04128         151 SINVQKIFKIVLAKAFD  167 (182)
T ss_pred             CCCHHHHHHHHHHHHHh
Confidence            99999999999988765

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=100.00  E-value=9e-34  Score=200.13  Aligned_cols=159  Identities=35%  Similarity=0.598  Sum_probs=140.1

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEE
Q psy15714         23 ALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCF  102 (205)
Q Consensus        23 ~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~  102 (205)
                      .+||+++|++|+|||||++++.++.+...+.++.+..+...+.+++..+.+.+||++|++.++.++..+++.++++++||
T Consensus         1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~   80 (162)
T cd04138           1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF   80 (162)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence            37999999999999999999999999888888888777677788888889999999999999999999999999999999


Q ss_pred             ECCCcchHHHHHHHHHHHHhhhC--CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccC
Q psy15714        103 SIGSTSSYENILSKWYPELKHHC--PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAK  180 (205)
Q Consensus       103 d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  180 (205)
                      |++++.+++++. .|+..+.+..  .+.|+++|+||+|+...             ....+++..+++..+.. ++++||+
T Consensus        81 ~~~~~~s~~~~~-~~~~~i~~~~~~~~~piivv~nK~Dl~~~-------------~~~~~~~~~~~~~~~~~-~~~~Sa~  145 (162)
T cd04138          81 AINSRKSFEDIH-TYREQIKRVKDSDDVPMVLVGNKCDLAAR-------------TVSSRQGQDLAKSYGIP-YIETSAK  145 (162)
T ss_pred             ECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECcccccc-------------eecHHHHHHHHHHhCCe-EEEecCC
Confidence            999999999987 6777776654  58999999999998753             56677788888887775 9999999


Q ss_pred             CCCCHHHHHHHHHHHH
Q psy15714        181 LNEGLDQVFIAAVRSA  196 (205)
Q Consensus       181 ~~~~i~~~~~~i~~~~  196 (205)
                      +|.|++++|+++++.+
T Consensus       146 ~~~gi~~l~~~l~~~~  161 (162)
T cd04138         146 TRQGVEEAFYTLVREI  161 (162)
T ss_pred             CCCCHHHHHHHHHHHh
Confidence            9999999999998754

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd04140 ARHI_like ARHI subfamily

Probab=100.00  E-value=1.1e-33  Score=200.74  Aligned_cols=158  Identities=27%  Similarity=0.495  Sum_probs=138.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEEE
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFS  103 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d  103 (205)
                      +||+++|++|+|||||++++.++.+...+.++.+..+...+..++..+.+.+||++|+++|..++..+++.++++++|||
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d   81 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS   81 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEE
Confidence            79999999999999999999999998888888877766667778888999999999999999888888999999999999


Q ss_pred             CCCcchHHHHHHHHHHHHhhhC----CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEccc
Q psy15714        104 IGSTSSYENILSKWYPELKHHC----PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSA  179 (205)
Q Consensus       104 ~~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  179 (205)
                      ++++++++.+. .|+..+....    +++|+++|+||+|+...+            .+..+++..++...+.. ++++||
T Consensus        82 ~~~~~s~~~~~-~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~------------~v~~~~~~~~~~~~~~~-~~e~SA  147 (165)
T cd04140          82 VTSKQSLEELK-PIYELICEIKGNNIEKIPIMLVGNKCDESHKR------------EVSSNEGAACATEWNCA-FMETSA  147 (165)
T ss_pred             CCCHHHHHHHH-HHHHHHHHHhcCCCCCCCEEEEEECccccccC------------eecHHHHHHHHHHhCCc-EEEeec
Confidence            99999999987 6777776542    579999999999997643            56777788888888775 999999


Q ss_pred             CCCCCHHHHHHHHHHH
Q psy15714        180 KLNEGLDQVFIAAVRS  195 (205)
Q Consensus       180 ~~~~~i~~~~~~i~~~  195 (205)
                      ++|+|++++|++|+..
T Consensus       148 ~~g~~v~~~f~~l~~~  163 (165)
T cd04140         148 KTNHNVQELFQELLNL  163 (165)
T ss_pred             CCCCCHHHHHHHHHhc
Confidence            9999999999999754

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd04129 Rho2 Rho2 subfamily

Probab=100.00  E-value=2.5e-33  Score=202.63  Aligned_cols=180  Identities=45%  Similarity=0.819  Sum_probs=151.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEEE
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFS  103 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d  103 (205)
                      .||+++|++|+|||||++++..+.+.+.+.++....+...+.+++..+.+.+||++|++.+.......+..+++++++||
T Consensus         2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~   81 (187)
T cd04129           2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGFA   81 (187)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEEE
Confidence            59999999999999999999988888777777776666667778888899999999999888777778899999999999


Q ss_pred             CCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCCCC
Q psy15714        104 IGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNE  183 (205)
Q Consensus       104 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  183 (205)
                      +++.++++.+...|+..+....+++|+++|+||+|+.........  ....+.++.++++.+++..+..+++++||++|.
T Consensus        82 i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~  159 (187)
T cd04129          82 VDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEE--YRTQRFVPIQQGKRVAKEIGAKKYMECSALTGE  159 (187)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccc--cccCCcCCHHHHHHHHHHhCCcEEEEccCCCCC
Confidence            999999999976899999887788999999999998643221111  111235677888999999998779999999999


Q ss_pred             CHHHHHHHHHHHHHhhccc----CCC
Q psy15714        184 GLDQVFIAAVRSAVKKQDK----SCC  205 (205)
Q Consensus       184 ~i~~~~~~i~~~~~~~~~~----~~~  205 (205)
                      |++++|+++.+.++.-+++    +||
T Consensus       160 ~v~~~f~~l~~~~~~~~~~~~~~~~~  185 (187)
T cd04129         160 GVDDVFEAATRAALLVRKSEPGAGCC  185 (187)
T ss_pred             CHHHHHHHHHHHHhcccCcccccCcc
Confidence            9999999999988776665    487

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>cd01864 Rab19 Rab19 subfamily

Probab=100.00  E-value=1.2e-33  Score=200.37  Aligned_cols=161  Identities=25%  Similarity=0.458  Sum_probs=142.2

Q ss_pred             eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEE
Q psy15714         22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLL  100 (205)
Q Consensus        22 ~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~  100 (205)
                      +.+||+++|++|+|||||++++..+.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus         2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll   81 (165)
T cd01864           2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII   81 (165)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence            458999999999999999999999998887777776555 4567788888899999999999999988889999999999


Q ss_pred             EEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEccc
Q psy15714        101 CFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSA  179 (205)
Q Consensus       101 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  179 (205)
                      |||++++.+++.+. .|+..+.... .++|+++|+||+|+...+            ....+++..+++..+...++++||
T Consensus        82 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~~~~e~Sa  148 (165)
T cd01864          82 AYDITRRSSFESVP-HWIEEVEKYGASNVVLLLIGNKCDLEEQR------------EVLFEEACTLAEKNGMLAVLETSA  148 (165)
T ss_pred             EEECcCHHHHHhHH-HHHHHHHHhCCCCCcEEEEEECccccccc------------ccCHHHHHHHHHHcCCcEEEEEEC
Confidence            99999999999987 8999887755 689999999999997654            567778889999888877999999


Q ss_pred             CCCCCHHHHHHHHHHH
Q psy15714        180 KLNEGLDQVFIAAVRS  195 (205)
Q Consensus       180 ~~~~~i~~~~~~i~~~  195 (205)
                      ++|.|++++|+++.+.
T Consensus       149 ~~~~~v~~~~~~l~~~  164 (165)
T cd01864         149 KESQNVEEAFLLMATE  164 (165)
T ss_pred             CCCCCHHHHHHHHHHh
Confidence            9999999999999864

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04106 Rab23_lke Rab23-like subfamily

Probab=100.00  E-value=7.5e-34  Score=200.77  Aligned_cols=158  Identities=25%  Similarity=0.526  Sum_probs=140.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEEC--CEEEEEEEEEcCCCcccccccccCcCCCcEEEE
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVD--NKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLL  100 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~  100 (205)
                      +||+++|.+++|||||++++.++.+...+.++.+..+ ...+.++  +..+.+++||+||++.++.++..+++++|++++
T Consensus         1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~   80 (162)
T cd04106           1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence            4899999999999999999999999888888887666 4455666  778899999999999999999999999999999


Q ss_pred             EEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccC
Q psy15714        101 CFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAK  180 (205)
Q Consensus       101 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  180 (205)
                      |||+++++++..+. .|+..+.....++|+++|+||+|+....            .++.+++..+++..+.. ++++||+
T Consensus        81 v~d~~~~~s~~~l~-~~~~~~~~~~~~~p~iiv~nK~Dl~~~~------------~v~~~~~~~~~~~~~~~-~~~~Sa~  146 (162)
T cd04106          81 VFSTTDRESFEAIE-SWKEKVEAECGDIPMVLVQTKIDLLDQA------------VITNEEAEALAKRLQLP-LFRTSVK  146 (162)
T ss_pred             EEECCCHHHHHHHH-HHHHHHHHhCCCCCEEEEEEChhccccc------------CCCHHHHHHHHHHcCCe-EEEEECC
Confidence            99999999999987 8999988777899999999999997654            66778888999988875 9999999


Q ss_pred             CCCCHHHHHHHHHHH
Q psy15714        181 LNEGLDQVFIAAVRS  195 (205)
Q Consensus       181 ~~~~i~~~~~~i~~~  195 (205)
                      +++|++++|+++.+.
T Consensus       147 ~~~~v~~l~~~l~~~  161 (162)
T cd04106         147 DDFNVTELFEYLAEK  161 (162)
T ss_pred             CCCCHHHHHHHHHHh
Confidence            999999999998754

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd04125 RabA_like RabA-like subfamily

Probab=100.00  E-value=1.7e-33  Score=203.69  Aligned_cols=162  Identities=28%  Similarity=0.510  Sum_probs=144.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEE
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCF  102 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~  102 (205)
                      +||+++|++|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||++|++.+...+..+++++|++++||
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~   80 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY   80 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence            5899999999999999999999999877888887665 456778888899999999999999999999999999999999


Q ss_pred             ECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCC
Q psy15714        103 SIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKL  181 (205)
Q Consensus       103 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  181 (205)
                      |++++.++..+. .|+..+.... .+.|+++|+||+|+....            .++.++++.++...+.. ++++||++
T Consensus        81 d~~~~~s~~~i~-~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~------------~v~~~~~~~~~~~~~~~-~~evSa~~  146 (188)
T cd04125          81 DVTDQESFENLK-FWINEINRYARENVIKVIVANKSDLVNNK------------VVDSNIAKSFCDSLNIP-FFETSAKQ  146 (188)
T ss_pred             ECcCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEECCCCcccc------------cCCHHHHHHHHHHcCCe-EEEEeCCC
Confidence            999999999997 6999888765 578999999999997654            67778888888888875 99999999


Q ss_pred             CCCHHHHHHHHHHHHHhh
Q psy15714        182 NEGLDQVFIAAVRSAVKK  199 (205)
Q Consensus       182 ~~~i~~~~~~i~~~~~~~  199 (205)
                      +.|++++|+++.+.+.+.
T Consensus       147 ~~~i~~~f~~l~~~~~~~  164 (188)
T cd04125         147 SINVEEAFILLVKLIIKR  164 (188)
T ss_pred             CCCHHHHHHHHHHHHHHH
Confidence            999999999999998874

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=100.00  E-value=1.2e-33  Score=200.58  Aligned_cols=160  Identities=28%  Similarity=0.528  Sum_probs=142.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEE
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCF  102 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~  102 (205)
                      +||+++|++|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+..++..+++.+|++|+||
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY   80 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence            5899999999999999999999999888888887666 456778899999999999999999998999999999999999


Q ss_pred             ECCCcchHHHHHHHHHHHHhhhC------CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEE
Q psy15714        103 SIGSTSSYENILSKWYPELKHHC------PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLE  176 (205)
Q Consensus       103 d~~~~~s~~~~~~~~~~~~~~~~------~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (205)
                      |++++.++..+. .|+..+....      .+.|+++|+||+|+....            ..+.++.+.+++..+.. +++
T Consensus        81 D~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~-~~~  146 (168)
T cd04119          81 DVTDRQSFEALD-SWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHR------------AVSEDEGRLWAESKGFK-YFE  146 (168)
T ss_pred             ECCCHHHHHhHH-HHHHHHHHhccccccCCCceEEEEEEchhccccc------------ccCHHHHHHHHHHcCCe-EEE
Confidence            999999999987 7998887764      368999999999997533            56778888888888855 999


Q ss_pred             cccCCCCCHHHHHHHHHHHHH
Q psy15714        177 CSAKLNEGLDQVFIAAVRSAV  197 (205)
Q Consensus       177 ~Sa~~~~~i~~~~~~i~~~~~  197 (205)
                      +||++|+|++++|+++++.++
T Consensus       147 ~Sa~~~~gi~~l~~~l~~~l~  167 (168)
T cd04119         147 TSACTGEGVNEMFQTLFSSIV  167 (168)
T ss_pred             EECCCCCCHHHHHHHHHHHHh
Confidence            999999999999999998875

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd04111 Rab39 Rab39 subfamily

Probab=100.00  E-value=1.5e-33  Score=207.19  Aligned_cols=164  Identities=29%  Similarity=0.525  Sum_probs=143.0

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEE-CCEEEEEEEEEcCCCcccccccccCcCCCcEEEE
Q psy15714         23 ALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITV-DNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLL  100 (205)
Q Consensus        23 ~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~  100 (205)
                      ++||+++|++|+|||||++++.++.+...+.+|++.++ ...+.+ ++..+.+++||++|++.+..++..+++++|++++
T Consensus         2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil   81 (211)
T cd04111           2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL   81 (211)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence            58999999999999999999999999888788876655 345555 4677899999999999999998899999999999


Q ss_pred             EEECCCcchHHHHHHHHHHHHhhhC--CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcc
Q psy15714        101 CFSIGSTSSYENILSKWYPELKHHC--PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECS  178 (205)
Q Consensus       101 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  178 (205)
                      |||++++++++++. .|+..+....  ...|++||+||+|+....            .++.+++..+++.++.. ++++|
T Consensus        82 v~D~~~~~Sf~~l~-~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~------------~v~~~~~~~~~~~~~~~-~~e~S  147 (211)
T cd04111          82 VFDITNRESFEHVH-DWLEEARSHIQPHRPVFILVGHKCDLESQR------------QVTREEAEKLAKDLGMK-YIETS  147 (211)
T ss_pred             EEECCCHHHHHHHH-HHHHHHHHhcCCCCCeEEEEEEcccccccc------------ccCHHHHHHHHHHhCCE-EEEEe
Confidence            99999999999997 7988887654  357889999999997654            67888899999998855 99999


Q ss_pred             cCCCCCHHHHHHHHHHHHHhhc
Q psy15714        179 AKLNEGLDQVFIAAVRSAVKKQ  200 (205)
Q Consensus       179 a~~~~~i~~~~~~i~~~~~~~~  200 (205)
                      |++|+|++++|++|.+.+.+..
T Consensus       148 ak~g~~v~e~f~~l~~~~~~~~  169 (211)
T cd04111         148 ARTGDNVEEAFELLTQEIYERI  169 (211)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHh
Confidence            9999999999999999887653

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=100.00  E-value=1.8e-33  Score=199.12  Aligned_cols=160  Identities=36%  Similarity=0.556  Sum_probs=140.8

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEE
Q psy15714         23 ALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCF  102 (205)
Q Consensus        23 ~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~  102 (205)
                      .+||+++|++|+|||||++++.++.+...+.++....+.....+++..+.+.+||+||++++..++..+++++|++++||
T Consensus         2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   81 (164)
T cd04145           2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVF   81 (164)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEE
Confidence            48999999999999999999999998888888887766666778898899999999999999999999999999999999


Q ss_pred             ECCCcchHHHHHHHHHHHHhhhC--CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccC
Q psy15714        103 SIGSTSSYENILSKWYPELKHHC--PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAK  180 (205)
Q Consensus       103 d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  180 (205)
                      |++++.+++.+. .|+..+....  .+.|+++++||+|+....            .+..+++..+++..+.. ++++||+
T Consensus        82 d~~~~~s~~~~~-~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~------------~~~~~~~~~~~~~~~~~-~~~~Sa~  147 (164)
T cd04145          82 SVTDRGSFEEVD-KFHTQILRVKDRDEFPMILVGNKADLEHQR------------KVSREEGQELARKLKIP-YIETSAK  147 (164)
T ss_pred             ECCCHHHHHHHH-HHHHHHHHHhCCCCCCEEEEeeCccccccc------------eecHHHHHHHHHHcCCc-EEEeeCC
Confidence            999999999987 6777776543  589999999999997653            56777788888888775 9999999


Q ss_pred             CCCCHHHHHHHHHHHH
Q psy15714        181 LNEGLDQVFIAAVRSA  196 (205)
Q Consensus       181 ~~~~i~~~~~~i~~~~  196 (205)
                      +|.|++++|+++++.+
T Consensus       148 ~~~~i~~l~~~l~~~~  163 (164)
T cd04145         148 DRLNVDKAFHDLVRVI  163 (164)
T ss_pred             CCCCHHHHHHHHHHhh
Confidence            9999999999998764

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd04116 Rab9 Rab9 subfamily

Probab=100.00  E-value=2.8e-33  Score=199.43  Aligned_cols=161  Identities=33%  Similarity=0.536  Sum_probs=141.3

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEE
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFL   99 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   99 (205)
                      ...+||+++|++++|||||++++..+.+.+.+.++.+..+ ...+.+++..+.+.|||+||+++++.++..+++.+|+++
T Consensus         3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i   82 (170)
T cd04116           3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCL   82 (170)
T ss_pred             ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEE
Confidence            4569999999999999999999999999887777776655 456778899999999999999999999999999999999


Q ss_pred             EEEECCCcchHHHHHHHHHHHHhhhC-----CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceE
Q psy15714        100 LCFSIGSTSSYENILSKWYPELKHHC-----PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEY  174 (205)
Q Consensus       100 ~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (205)
                      +|||++++.+++.+. .|...+....     .++|+++|+||+|+...             .++.++++++++..+..++
T Consensus        83 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-------------~~~~~~~~~~~~~~~~~~~  148 (170)
T cd04116          83 LTFAVDDSQSFQNLS-NWKKEFIYYADVKEPESFPFVVLGNKNDIPER-------------QVSTEEAQAWCRENGDYPY  148 (170)
T ss_pred             EEEECCCHHHHHhHH-HHHHHHHHhcccccCCCCcEEEEEECcccccc-------------ccCHHHHHHHHHHCCCCeE
Confidence            999999999999986 7887775533     46899999999998732             6778889999998887679


Q ss_pred             EEcccCCCCCHHHHHHHHHHH
Q psy15714        175 LECSAKLNEGLDQVFIAAVRS  195 (205)
Q Consensus       175 ~~~Sa~~~~~i~~~~~~i~~~  195 (205)
                      +++||++|.|++++|+++++.
T Consensus       149 ~e~Sa~~~~~v~~~~~~~~~~  169 (170)
T cd04116         149 FETSAKDATNVAAAFEEAVRR  169 (170)
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            999999999999999999864

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=100.00  E-value=3.5e-33  Score=198.18  Aligned_cols=159  Identities=31%  Similarity=0.550  Sum_probs=136.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEE
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCF  102 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~  102 (205)
                      +||+++|++|+|||||++++..+.+...+.+|.+..+ ...+..++..+.+.+||++|++.+..++..++..+|++|+||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF   80 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence            5899999999999999999999998888888886655 345566788899999999999999988888999999999999


Q ss_pred             ECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCCC
Q psy15714        103 SIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLN  182 (205)
Q Consensus       103 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  182 (205)
                      |+++++++..+. .|+..+.....++|+++|+||+|+...             .+. .+...+++..+.. ++++||++|
T Consensus        81 d~~~~~s~~~~~-~~~~~i~~~~~~~piiiv~nK~Dl~~~-------------~~~-~~~~~~~~~~~~~-~~e~Sa~~~  144 (166)
T cd00877          81 DVTSRVTYKNVP-NWHRDLVRVCGNIPIVLCGNKVDIKDR-------------KVK-AKQITFHRKKNLQ-YYEISAKSN  144 (166)
T ss_pred             ECCCHHHHHHHH-HHHHHHHHhCCCCcEEEEEEchhcccc-------------cCC-HHHHHHHHHcCCE-EEEEeCCCC
Confidence            999999999987 899999887778999999999999732             222 2344566555555 999999999


Q ss_pred             CCHHHHHHHHHHHHHh
Q psy15714        183 EGLDQVFIAAVRSAVK  198 (205)
Q Consensus       183 ~~i~~~~~~i~~~~~~  198 (205)
                      +|++++|+++.+.+.+
T Consensus       145 ~~v~~~f~~l~~~~~~  160 (166)
T cd00877         145 YNFEKPFLWLARKLLG  160 (166)
T ss_pred             CChHHHHHHHHHHHHh
Confidence            9999999999998875

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>PLN03110 Rab GTPase; Provisional

Probab=100.00  E-value=3.8e-33  Score=205.74  Aligned_cols=165  Identities=27%  Similarity=0.483  Sum_probs=146.7

Q ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEE
Q psy15714         20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCF   98 (205)
Q Consensus        20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   98 (205)
                      ....+||+++|++|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.|||++|++++..++..+++.++++
T Consensus         9 ~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~   88 (216)
T PLN03110          9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGA   88 (216)
T ss_pred             cCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEE
Confidence            44678999999999999999999999998877788887666 56778889999999999999999999999999999999


Q ss_pred             EEEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEc
Q psy15714         99 LLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLEC  177 (205)
Q Consensus        99 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (205)
                      |+|||++++.+++.+. .|+..+.... .++|+++|+||+|+...+            .+..++++.++...+.. ++++
T Consensus        89 ilv~d~~~~~s~~~~~-~~~~~~~~~~~~~~piiiv~nK~Dl~~~~------------~~~~~~~~~l~~~~~~~-~~e~  154 (216)
T PLN03110         89 LLVYDITKRQTFDNVQ-RWLRELRDHADSNIVIMMAGNKSDLNHLR------------SVAEEDGQALAEKEGLS-FLET  154 (216)
T ss_pred             EEEEECCChHHHHHHH-HHHHHHHHhCCCCCeEEEEEEChhccccc------------CCCHHHHHHHHHHcCCE-EEEE
Confidence            9999999999999987 8999888766 589999999999996554            67778888888887765 9999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHh
Q psy15714        178 SAKLNEGLDQVFIAAVRSAVK  198 (205)
Q Consensus       178 Sa~~~~~i~~~~~~i~~~~~~  198 (205)
                      ||++|+|++++|+++++.+..
T Consensus       155 SA~~g~~v~~lf~~l~~~i~~  175 (216)
T PLN03110        155 SALEATNVEKAFQTILLEIYH  175 (216)
T ss_pred             eCCCCCCHHHHHHHHHHHHHH
Confidence            999999999999999988765

>cd04109 Rab28 Rab28 subfamily

Probab=100.00  E-value=2.1e-33  Score=207.14  Aligned_cols=161  Identities=21%  Similarity=0.381  Sum_probs=142.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECC-EEEEEEEEEcCCCcccccccccCcCCCcEEEEE
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDN-KTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLC  101 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v  101 (205)
                      +||+++|.+|+|||||+++|.++.+...+.+|.+.++ ...+.+++ ..+.+.|||++|++.+..++..+++++|++|+|
T Consensus         1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV   80 (215)
T cd04109           1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV   80 (215)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence            5899999999999999999999999888889887555 45566654 578999999999999999999999999999999


Q ss_pred             EECCCcchHHHHHHHHHHHHhhhC----CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEc
Q psy15714        102 FSIGSTSSYENILSKWYPELKHHC----PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLEC  177 (205)
Q Consensus       102 ~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (205)
                      ||++++++++.+. .|+..+.+..    .+.|+++|+||+|+...+            .++.+++..+++.++.. ++++
T Consensus        81 ~D~t~~~s~~~~~-~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~------------~v~~~~~~~~~~~~~~~-~~~i  146 (215)
T cd04109          81 YDVTNSQSFENLE-DWYSMVRKVLKSSETQPLVVLVGNKTDLEHNR------------TVKDDKHARFAQANGME-SCLV  146 (215)
T ss_pred             EECCCHHHHHHHH-HHHHHHHHhccccCCCceEEEEEECccccccc------------ccCHHHHHHHHHHcCCE-EEEE
Confidence            9999999999987 7999888764    357899999999997544            67888899999988875 9999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHh
Q psy15714        178 SAKLNEGLDQVFIAAVRSAVK  198 (205)
Q Consensus       178 Sa~~~~~i~~~~~~i~~~~~~  198 (205)
                      ||++|+|++++|+++++.+..
T Consensus       147 SAktg~gv~~lf~~l~~~l~~  167 (215)
T cd04109         147 SAKTGDRVNLLFQQLAAELLG  167 (215)
T ss_pred             ECCCCCCHHHHHHHHHHHHHh
Confidence            999999999999999998875

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd04103 Centaurin_gamma Centaurin gamma

Probab=100.00  E-value=3.1e-33  Score=196.71  Aligned_cols=155  Identities=21%  Similarity=0.384  Sum_probs=130.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEEE
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFS  103 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d  103 (205)
                      +||+++|++|+|||||++++..+.|.+.+.++ ...+...+.+++..+.+.+||++|++.     ..+++.+|++++|||
T Consensus         1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~-~~~~~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d   74 (158)
T cd04103           1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPE-GGRFKKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFS   74 (158)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCC-ccceEEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEE
Confidence            58999999999999999999999987776555 444456788899999999999999975     245678999999999


Q ss_pred             CCCcchHHHHHHHHHHHHhhhC--CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCC
Q psy15714        104 IGSTSSYENILSKWYPELKHHC--PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKL  181 (205)
Q Consensus       104 ~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  181 (205)
                      ++++.||+++. .|+..+....  +++|+++|+||.|+....          .+.++.++++++++..+..++++|||++
T Consensus        75 ~~~~~sf~~~~-~~~~~i~~~~~~~~~piilvgnK~Dl~~~~----------~~~v~~~~~~~~~~~~~~~~~~e~SAk~  143 (158)
T cd04103          75 LENEASFQTVY-NLYHQLSSYRNISEIPLILVGTQDAISESN----------PRVIDDARARQLCADMKRCSYYETCATY  143 (158)
T ss_pred             CCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEeeHHHhhhcC----------CcccCHHHHHHHHHHhCCCcEEEEecCC
Confidence            99999999997 6888887765  679999999999985321          1278888899999887644599999999


Q ss_pred             CCCHHHHHHHHHHH
Q psy15714        182 NEGLDQVFIAAVRS  195 (205)
Q Consensus       182 ~~~i~~~~~~i~~~  195 (205)
                      |+||+++|..+.+.
T Consensus       144 ~~~i~~~f~~~~~~  157 (158)
T cd04103         144 GLNVERVFQEAAQK  157 (158)
T ss_pred             CCCHHHHHHHHHhh
Confidence            99999999998864

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>cd01866 Rab2 Rab2 subfamily

Probab=100.00  E-value=6e-33  Score=197.41  Aligned_cols=163  Identities=28%  Similarity=0.532  Sum_probs=143.5

Q ss_pred             eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEE
Q psy15714         22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLL  100 (205)
Q Consensus        22 ~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~  100 (205)
                      ..+||+++|.+|+|||||++++..+.+...+.++.+..+ ...+.+++..+.+.+||+||++.+..+...+++.+|++++
T Consensus         3 ~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~   82 (168)
T cd01866           3 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL   82 (168)
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence            458999999999999999999999998877777776655 4566778888899999999999999888889999999999


Q ss_pred             EEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEccc
Q psy15714        101 CFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSA  179 (205)
Q Consensus       101 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  179 (205)
                      |||++++.++..+. .|+..+.... +++|+++|+||.|+....            .++.++++.++...+.. ++++||
T Consensus        83 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~pvivv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~-~~e~Sa  148 (168)
T cd01866          83 VYDITRRETFNHLT-SWLEDARQHSNSNMTIMLIGNKCDLESRR------------EVSYEEGEAFAKEHGLI-FMETSA  148 (168)
T ss_pred             EEECCCHHHHHHHH-HHHHHHHHhCCCCCcEEEEEECccccccc------------CCCHHHHHHHHHHcCCE-EEEEeC
Confidence            99999999999987 7999887765 789999999999987543            67778888888888776 999999


Q ss_pred             CCCCCHHHHHHHHHHHHHh
Q psy15714        180 KLNEGLDQVFIAAVRSAVK  198 (205)
Q Consensus       180 ~~~~~i~~~~~~i~~~~~~  198 (205)
                      ++++|++++|.++.+.+.+
T Consensus       149 ~~~~~i~~~~~~~~~~~~~  167 (168)
T cd01866         149 KTASNVEEAFINTAKEIYE  167 (168)
T ss_pred             CCCCCHHHHHHHHHHHHHh
Confidence            9999999999999988754

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd04118 Rab24 Rab24 subfamily

Probab=100.00  E-value=7e-33  Score=201.32  Aligned_cols=166  Identities=27%  Similarity=0.490  Sum_probs=142.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCC-CCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEE
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTENKFPT-DYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLC  101 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~~~~~-~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v  101 (205)
                      +||+++|.+|+|||||+++|..+.+.. .+.+|++..+ ...+.+++..+.+.+||++|++.++.++..++..+|++++|
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv   80 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC   80 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence            589999999999999999999999874 6778887766 45788899999999999999999999988899999999999


Q ss_pred             EECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCC
Q psy15714        102 FSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKL  181 (205)
Q Consensus       102 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  181 (205)
                      ||++++.+++.+. .|+..+....+++|+++|+||+|+......        .+.+..+++..+++..+.. ++++||++
T Consensus        81 ~d~~~~~s~~~~~-~~~~~i~~~~~~~piilv~nK~Dl~~~~~~--------~~~v~~~~~~~~~~~~~~~-~~~~Sa~~  150 (193)
T cd04118          81 YDLTDSSSFERAK-FWVKELQNLEEHCKIYLCGTKSDLIEQDRS--------LRQVDFHDVQDFADEIKAQ-HFETSSKT  150 (193)
T ss_pred             EECCCHHHHHHHH-HHHHHHHhcCCCCCEEEEEEcccccccccc--------cCccCHHHHHHHHHHcCCe-EEEEeCCC
Confidence            9999999999986 799988877678999999999998643210        1255667788888887766 89999999


Q ss_pred             CCCHHHHHHHHHHHHHhh
Q psy15714        182 NEGLDQVFIAAVRSAVKK  199 (205)
Q Consensus       182 ~~~i~~~~~~i~~~~~~~  199 (205)
                      ++|++++|+++.+.+.+.
T Consensus       151 ~~gv~~l~~~i~~~~~~~  168 (193)
T cd04118         151 GQNVDELFQKVAEDFVSR  168 (193)
T ss_pred             CCCHHHHHHHHHHHHHHh
Confidence            999999999999988663

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd04113 Rab4 Rab4 subfamily

Probab=100.00  E-value=3.3e-33  Score=197.32  Aligned_cols=158  Identities=30%  Similarity=0.531  Sum_probs=140.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEE
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCF  102 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~  102 (205)
                      +||+++|++|+|||||++++..+.+...+.++.+..+ ...+.+++..+.+.+||+||++.|...++.+++++|++++||
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence            5899999999999999999999998887777776655 456778888899999999999999998889999999999999


Q ss_pred             ECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCC
Q psy15714        103 SIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKL  181 (205)
Q Consensus       103 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  181 (205)
                      |+++++++..+. .|+..+.... +++|+++++||.|+....            .++.+++..+++..+.. ++++||++
T Consensus        81 d~~~~~s~~~~~-~~~~~~~~~~~~~~~iivv~nK~D~~~~~------------~~~~~~~~~~~~~~~~~-~~~~Sa~~  146 (161)
T cd04113          81 DITNRTSFEALP-TWLSDARALASPNIVVILVGNKSDLADQR------------EVTFLEASRFAQENGLL-FLETSALT  146 (161)
T ss_pred             ECCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEEchhcchhc------------cCCHHHHHHHHHHcCCE-EEEEECCC
Confidence            999999999987 7888876655 789999999999997643            67788889999988854 99999999


Q ss_pred             CCCHHHHHHHHHHH
Q psy15714        182 NEGLDQVFIAAVRS  195 (205)
Q Consensus       182 ~~~i~~~~~~i~~~  195 (205)
                      +.|++++|+++++.
T Consensus       147 ~~~i~~~~~~~~~~  160 (161)
T cd04113         147 GENVEEAFLKCARS  160 (161)
T ss_pred             CCCHHHHHHHHHHh
Confidence            99999999999875

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd04177 RSR1 RSR1 subgroup

Probab=100.00  E-value=8e-33  Score=196.78  Aligned_cols=162  Identities=30%  Similarity=0.532  Sum_probs=143.0

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEE
Q psy15714         23 ALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCF  102 (205)
Q Consensus        23 ~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~  102 (205)
                      .+||+++|.+|+|||||++++.++.+...+.++.+..+...+.+++..+.+.+||+||++.|+.+++.+++.++++++||
T Consensus         1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~   80 (168)
T cd04177           1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY   80 (168)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence            37999999999999999999999999888888887776677778898899999999999999999999999999999999


Q ss_pred             ECCCcchHHHHHHHHHHHHhhhC--CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccC
Q psy15714        103 SIGSTSSYENILSKWYPELKHHC--PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAK  180 (205)
Q Consensus       103 d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  180 (205)
                      |++++++++.+. .|...+.+..  .++|+++++||.|+...+            .+..+++..+++.++..+++++||+
T Consensus        81 ~~~~~~s~~~~~-~~~~~i~~~~~~~~~piiiv~nK~D~~~~~------------~~~~~~~~~~~~~~~~~~~~~~SA~  147 (168)
T cd04177          81 SVTSEASLNELG-ELREQVLRIKDSDNVPMVLVGNKADLEDDR------------QVSREDGVSLSQQWGNVPFYETSAR  147 (168)
T ss_pred             ECCCHHHHHHHH-HHHHHHHHhhCCCCCCEEEEEEChhccccC------------ccCHHHHHHHHHHcCCceEEEeeCC
Confidence            999999999987 7877776533  589999999999987654            5677778888888885569999999


Q ss_pred             CCCCHHHHHHHHHHHHH
Q psy15714        181 LNEGLDQVFIAAVRSAV  197 (205)
Q Consensus       181 ~~~~i~~~~~~i~~~~~  197 (205)
                      ++.|++++|.++...++
T Consensus       148 ~~~~i~~~f~~i~~~~~  164 (168)
T cd04177         148 KRTNVDEVFIDLVRQII  164 (168)
T ss_pred             CCCCHHHHHHHHHHHHh
Confidence            99999999999987654

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd01868 Rab11_like Rab11-like

Probab=100.00  E-value=5.9e-33  Score=196.82  Aligned_cols=160  Identities=32%  Similarity=0.533  Sum_probs=141.5

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEE
Q psy15714         23 ALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLC  101 (205)
Q Consensus        23 ~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v  101 (205)
                      .+||+++|++++|||||++++.++.+...+.++.+..+ ...+..++..+.+.+||+||++.+..++..+++.++++|+|
T Consensus         3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v   82 (165)
T cd01868           3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV   82 (165)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEE
Confidence            47999999999999999999999998877788887665 56677888888999999999999999988899999999999


Q ss_pred             EECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccC
Q psy15714        102 FSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAK  180 (205)
Q Consensus       102 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  180 (205)
                      ||++++.++.++. .|+..+.... .++|+++|+||.|+...+            .+..++...+++..+.. ++++||+
T Consensus        83 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~-~~~~Sa~  148 (165)
T cd01868          83 YDITKKQTFENVE-RWLKELRDHADSNIVIMLVGNKSDLRHLR------------AVPTEEAKAFAEKNGLS-FIETSAL  148 (165)
T ss_pred             EECcCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEECccccccc------------cCCHHHHHHHHHHcCCE-EEEEECC
Confidence            9999999999987 8999888776 469999999999987653            66777888888877665 9999999


Q ss_pred             CCCCHHHHHHHHHHHH
Q psy15714        181 LNEGLDQVFIAAVRSA  196 (205)
Q Consensus       181 ~~~~i~~~~~~i~~~~  196 (205)
                      +|.|++++|+++++.+
T Consensus       149 ~~~~v~~l~~~l~~~i  164 (165)
T cd01868         149 DGTNVEEAFKQLLTEI  164 (165)
T ss_pred             CCCCHHHHHHHHHHHh
Confidence            9999999999998765

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>PLN03108 Rab family protein; Provisional

Probab=100.00  E-value=9e-33  Score=202.99  Aligned_cols=166  Identities=29%  Similarity=0.542  Sum_probs=146.3

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEE
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFL   99 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   99 (205)
                      ...+||+++|++|+|||||++++..+.+...+.++.+..+ ...+.+++..+.+.+||++|++.+..++..++..+|++|
T Consensus         4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~v   83 (210)
T PLN03108          4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (210)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence            3569999999999999999999999998887778877665 456778888899999999999999998888999999999


Q ss_pred             EEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcc
Q psy15714        100 LCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECS  178 (205)
Q Consensus       100 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  178 (205)
                      +|||++++.++..+. .|+..+.... ++.|+++|+||+|+...+            .++.++++.+++.++.. ++++|
T Consensus        84 lv~D~~~~~s~~~l~-~~~~~~~~~~~~~~piiiv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~-~~e~S  149 (210)
T PLN03108         84 LVYDITRRETFNHLA-SWLEDARQHANANMTIMLIGNKCDLAHRR------------AVSTEEGEQFAKEHGLI-FMEAS  149 (210)
T ss_pred             EEEECCcHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECccCcccc------------CCCHHHHHHHHHHcCCE-EEEEe
Confidence            999999999999987 7887776554 689999999999997654            67888899999988875 99999


Q ss_pred             cCCCCCHHHHHHHHHHHHHhhc
Q psy15714        179 AKLNEGLDQVFIAAVRSAVKKQ  200 (205)
Q Consensus       179 a~~~~~i~~~~~~i~~~~~~~~  200 (205)
                      |+++.|++++|+++++.++++.
T Consensus       150 a~~~~~v~e~f~~l~~~~~~~~  171 (210)
T PLN03108        150 AKTAQNVEEAFIKTAAKIYKKI  171 (210)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHh
Confidence            9999999999999999988754

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=100.00  E-value=4.3e-33  Score=202.38  Aligned_cols=155  Identities=30%  Similarity=0.551  Sum_probs=135.8

Q ss_pred             ECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEEECCCc
Q psy15714         29 VGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGST  107 (205)
Q Consensus        29 ~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~  107 (205)
                      +|.+|+|||||+++|..+.+...+.+|++..+ ...+.+++..+.+.|||++|++.|+.++..++++++++|+|||++++
T Consensus         1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~   80 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR   80 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence            69999999999999999999888888887666 46677888999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCCCCCHHH
Q psy15714        108 SSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQ  187 (205)
Q Consensus       108 ~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  187 (205)
                      .+++.+. .|+..+.+..+++|+++|+||+|+...             .+..++ ..+++..++. +++|||++|+||++
T Consensus        81 ~S~~~i~-~w~~~i~~~~~~~piilvgNK~Dl~~~-------------~v~~~~-~~~~~~~~~~-~~e~SAk~~~~v~~  144 (200)
T smart00176       81 VTYKNVP-NWHRDLVRVCENIPIVLCGNKVDVKDR-------------KVKAKS-ITFHRKKNLQ-YYDISAKSNYNFEK  144 (200)
T ss_pred             HHHHHHH-HHHHHHHHhCCCCCEEEEEECcccccc-------------cCCHHH-HHHHHHcCCE-EEEEeCCCCCCHHH
Confidence            9999987 799999887789999999999998642             333333 3566776766 99999999999999


Q ss_pred             HHHHHHHHHHhh
Q psy15714        188 VFIAAVRSAVKK  199 (205)
Q Consensus       188 ~~~~i~~~~~~~  199 (205)
                      +|.++++.+...
T Consensus       145 ~F~~l~~~i~~~  156 (200)
T smart00176      145 PFLWLARKLIGD  156 (200)
T ss_pred             HHHHHHHHHHhc
Confidence            999999988764

Ran is involved in the active transport of proteins through nuclear pores.

>cd04124 RabL2 RabL2 subfamily

Probab=100.00  E-value=9.9e-33  Score=194.99  Aligned_cols=159  Identities=28%  Similarity=0.453  Sum_probs=135.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEE
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCF  102 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~  102 (205)
                      +||+++|.+|+|||||++++..+.+.+.+.++..... .....+++..+.+.+||++|++.|+.++..+++.+|++++||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence            5899999999999999999999999877777665443 445667888899999999999999999999999999999999


Q ss_pred             ECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCCC
Q psy15714        103 SIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLN  182 (205)
Q Consensus       103 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  182 (205)
                      |++++.++.++. .|+..+....++.|+++|+||+|+...              . .++...++...+.. ++++||++|
T Consensus        81 d~~~~~s~~~~~-~~~~~i~~~~~~~p~ivv~nK~Dl~~~--------------~-~~~~~~~~~~~~~~-~~~~Sa~~~  143 (161)
T cd04124          81 DVTRKITYKNLS-KWYEELREYRPEIPCIVVANKIDLDPS--------------V-TQKKFNFAEKHNLP-LYYVSAADG  143 (161)
T ss_pred             ECCCHHHHHHHH-HHHHHHHHhCCCCcEEEEEECccCchh--------------H-HHHHHHHHHHcCCe-EEEEeCCCC
Confidence            999999999986 899999877778999999999998431              1 23445566666654 999999999


Q ss_pred             CCHHHHHHHHHHHHHhh
Q psy15714        183 EGLDQVFIAAVRSAVKK  199 (205)
Q Consensus       183 ~~i~~~~~~i~~~~~~~  199 (205)
                      .|++++|+.+++.+...
T Consensus       144 ~gv~~l~~~l~~~~~~~  160 (161)
T cd04124         144 TNVVKLFQDAIKLAVSY  160 (161)
T ss_pred             CCHHHHHHHHHHHHHhc
Confidence            99999999999888764

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=100.00  E-value=1.5e-32  Score=195.73  Aligned_cols=160  Identities=29%  Similarity=0.550  Sum_probs=140.5

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccc-cccccCcCCCcEEEE
Q psy15714         23 ALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYE-RLRPMSYPNTDCFLL  100 (205)
Q Consensus        23 ~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~-~~~~~~~~~~~~~i~  100 (205)
                      .+||+++|++|+|||||++++..+.+...+.++.+..+ ...+.+++..+.+.+||++|++.++ .++..+++++|++++
T Consensus         2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~   81 (170)
T cd04115           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF   81 (170)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence            58999999999999999999999998877777776555 4567788989999999999999887 467888999999999


Q ss_pred             EEECCCcchHHHHHHHHHHHHhhhC--CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcc
Q psy15714        101 CFSIGSTSSYENILSKWYPELKHHC--PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECS  178 (205)
Q Consensus       101 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  178 (205)
                      |||++++.++..+. .|+..+....  .++|+++|+||+|+...+            .+..+++..+++..... ++++|
T Consensus        82 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~-~~e~S  147 (170)
T cd04115          82 VYDVTNMASFHSLP-SWIEECEQHSLPNEVPRILVGNKCDLREQI------------QVPTDLAQRFADAHSMP-LFETS  147 (170)
T ss_pred             EEECCCHHHHHhHH-HHHHHHHHhcCCCCCCEEEEEECccchhhc------------CCCHHHHHHHHHHcCCc-EEEEe
Confidence            99999999999987 8998887765  679999999999997654            67788888899888765 99999


Q ss_pred             cCC---CCCHHHHHHHHHHHH
Q psy15714        179 AKL---NEGLDQVFIAAVRSA  196 (205)
Q Consensus       179 a~~---~~~i~~~~~~i~~~~  196 (205)
                      |++   +.+++++|..+++.+
T Consensus       148 a~~~~~~~~i~~~f~~l~~~~  168 (170)
T cd04115         148 AKDPSENDHVEAIFMTLAHKL  168 (170)
T ss_pred             ccCCcCCCCHHHHHHHHHHHh
Confidence            999   899999999998766

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd04142 RRP22 RRP22 subfamily

Probab=100.00  E-value=2.3e-32  Score=198.79  Aligned_cols=164  Identities=26%  Similarity=0.434  Sum_probs=133.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccc--------cccCcCC
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERL--------RPMSYPN   94 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~~~   94 (205)
                      +||+|+|.+|+|||||+++|.++.+...+.|+.+... ...+.+++..+.+.+||+||...+...        ....++.
T Consensus         1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~   80 (198)
T cd04142           1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN   80 (198)
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence            5899999999999999999999999888888886554 456678898899999999997654321        2235789


Q ss_pred             CcEEEEEEECCCcchHHHHHHHHHHHHhhh----CCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHH-c
Q psy15714         95 TDCFLLCFSIGSTSSYENILSKWYPELKHH----CPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRK-I  169 (205)
Q Consensus        95 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  169 (205)
                      +|++|+|||++++++++.+. .|+..+...    ..++|+++|+||+|+...+            .+..++++.++++ +
T Consensus        81 ad~iilv~D~~~~~S~~~~~-~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~------------~~~~~~~~~~~~~~~  147 (198)
T cd04142          81 SRAFILVYDICSPDSFHYVK-LLRQQILETRPAGNKEPPIVVVGNKRDQQRHR------------FAPRHVLSVLVRKSW  147 (198)
T ss_pred             CCEEEEEEECCCHHHHHHHH-HHHHHHHHhcccCCCCCCEEEEEECccccccc------------cccHHHHHHHHHHhc
Confidence            99999999999999999987 787776554    2679999999999997643            5566667777654 4


Q ss_pred             CCceEEEcccCCCCCHHHHHHHHHHHHHhhcc
Q psy15714        170 KAAEYLECSAKLNEGLDQVFIAAVRSAVKKQD  201 (205)
Q Consensus       170 ~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~  201 (205)
                      ++. ++++||++|.|++++|+.+++.+....+
T Consensus       148 ~~~-~~e~Sak~g~~v~~lf~~i~~~~~~~~~  178 (198)
T cd04142         148 KCG-YLECSAKYNWHILLLFKELLISATTRGR  178 (198)
T ss_pred             CCc-EEEecCCCCCCHHHHHHHHHHHhhccCC
Confidence            554 9999999999999999999988776543

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd04143 Rhes_like Rhes_like subfamily

Probab=100.00  E-value=1.4e-32  Score=205.75  Aligned_cols=162  Identities=25%  Similarity=0.438  Sum_probs=139.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEEE
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFS  103 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d  103 (205)
                      +||+++|.+|+|||||+++|..+.+...+.+|+++.+...+.+++..+.+.|||++|++.|..++..++..+|++|+|||
T Consensus         1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfd   80 (247)
T cd04143           1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFS   80 (247)
T ss_pred             CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEe
Confidence            48999999999999999999999998888898886667778889999999999999999998888888899999999999


Q ss_pred             CCCcchHHHHHHHHHHHHhhh----------CCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCce
Q psy15714        104 IGSTSSYENILSKWYPELKHH----------CPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAE  173 (205)
Q Consensus       104 ~~~~~s~~~~~~~~~~~~~~~----------~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (205)
                      ++++++|+++. .|+..+...          ..++|+++|+||+|+...+            .+..+++.+++.......
T Consensus        81 v~~~~Sf~~i~-~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~------------~v~~~ei~~~~~~~~~~~  147 (247)
T cd04143          81 LDNRESFEEVC-RLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPR------------EVQRDEVEQLVGGDENCA  147 (247)
T ss_pred             CCCHHHHHHHH-HHHHHHHHhhcccccccccCCCCcEEEEEECccchhcc------------ccCHHHHHHHHHhcCCCE
Confidence            99999999987 777777542          2579999999999997643            566777777766543445


Q ss_pred             EEEcccCCCCCHHHHHHHHHHHHHh
Q psy15714        174 YLECSAKLNEGLDQVFIAAVRSAVK  198 (205)
Q Consensus       174 ~~~~Sa~~~~~i~~~~~~i~~~~~~  198 (205)
                      ++++||++|.|++++|++|.+.+..
T Consensus       148 ~~evSAktg~gI~elf~~L~~~~~~  172 (247)
T cd04143         148 YFEVSAKKNSNLDEMFRALFSLAKL  172 (247)
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHhcc
Confidence            9999999999999999999987643

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd00157 Rho Rho (Ras homology) family

Probab=100.00  E-value=4e-32  Score=193.53  Aligned_cols=170  Identities=57%  Similarity=1.046  Sum_probs=145.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEEE
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFS  103 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d  103 (205)
                      +||+++|++|+|||||++++.++.+...+.++....+......++..+.+++||+||++.+...+...++.+|++++|||
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d   80 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFS   80 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEE
Confidence            58999999999999999999999997777888777666677788889999999999999988888888899999999999


Q ss_pred             CCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCCCC
Q psy15714        104 IGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNE  183 (205)
Q Consensus       104 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  183 (205)
                      ++++.++......|+..+.....+.|+++|+||+|+.......... ......+..+++..++...+..+++++||++|+
T Consensus        81 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~  159 (171)
T cd00157          81 VDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKL-EKGKEPITPEEGEKLAKEIGAIGYMECSALTQE  159 (171)
T ss_pred             CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhc-ccCCCccCHHHHHHHHHHhCCeEEEEeecCCCC
Confidence            9999999998878999998887889999999999998665322111 111224567888999999998679999999999


Q ss_pred             CHHHHHHHHHH
Q psy15714        184 GLDQVFIAAVR  194 (205)
Q Consensus       184 ~i~~~~~~i~~  194 (205)
                      |++++|+++++
T Consensus       160 gi~~l~~~i~~  170 (171)
T cd00157         160 GVKEVFEEAIR  170 (171)
T ss_pred             CHHHHHHHHhh
Confidence            99999999875

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=100.00  E-value=1.6e-32  Score=194.69  Aligned_cols=159  Identities=30%  Similarity=0.469  Sum_probs=136.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCccc-ccccccCcCCCcEEEEEEE
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY-ERLRPMSYPNTDCFLLCFS  103 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-~~~~~~~~~~~~~~i~v~d  103 (205)
                      ||+++|++|+|||||++++..+.+...+.++....+...+.+++..+.+.+||+||++.+ ......+++.+|++++|||
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d   80 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYS   80 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEE
Confidence            689999999999999999999998888888877666667788999999999999999853 3345667889999999999


Q ss_pred             CCCcchHHHHHHHHHHHHhhhC---CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccC
Q psy15714        104 IGSTSSYENILSKWYPELKHHC---PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAK  180 (205)
Q Consensus       104 ~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  180 (205)
                      ++++++++.+. .|+..+....   .++|+++|+||+|+...+            .++.++++.+++..+.. ++++||+
T Consensus        81 ~~~~~s~~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~------------~v~~~~~~~~~~~~~~~-~~e~Sa~  146 (165)
T cd04146          81 ITDRSSFDEIS-QLKQLIREIKKRDREIPVILVGNKADLLHYR------------QVSTEEGEKLASELGCL-FFEVSAA  146 (165)
T ss_pred             CCCHHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECCchHHhC------------ccCHHHHHHHHHHcCCE-EEEeCCC
Confidence            99999999987 7888887754   489999999999986543            67788889999888865 9999999


Q ss_pred             CCC-CHHHHHHHHHHHHH
Q psy15714        181 LNE-GLDQVFIAAVRSAV  197 (205)
Q Consensus       181 ~~~-~i~~~~~~i~~~~~  197 (205)
                      ++. |++++|.++.+.+.
T Consensus       147 ~~~~~v~~~f~~l~~~~~  164 (165)
T cd04146         147 EDYDGVHSVFHELCREVR  164 (165)
T ss_pred             CCchhHHHHHHHHHHHHh
Confidence            995 99999999998764

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>KOG0081|consensus

Probab=100.00  E-value=1.2e-34  Score=194.07  Aligned_cols=171  Identities=29%  Similarity=0.488  Sum_probs=154.5

Q ss_pred             cccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEEC---------CEEEEEEEEEcCCCcccccc
Q psy15714         18 KSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVD---------NKTYDVTLWDTAGQEDYERL   87 (205)
Q Consensus        18 ~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~---------~~~~~~~i~D~~g~~~~~~~   87 (205)
                      ......+|++.+|++|+||||++.++.+++|.....+|.+.++ .+.+.++         +..+.+++||++|+++|+++
T Consensus         4 GdydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSL   83 (219)
T KOG0081|consen    4 GDYDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSL   83 (219)
T ss_pred             ccHHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHH
Confidence            3456778999999999999999999999999999999999888 4555542         46789999999999999999


Q ss_pred             cccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhC--CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHH
Q psy15714         88 RPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC--PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKM  165 (205)
Q Consensus        88 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (205)
                      ...|++.+-+++++||+++..||-++. .|+..+..++  ++..+++++||+||.+.+            .++..++..+
T Consensus        84 TTAFfRDAMGFlLiFDlT~eqSFLnvr-nWlSQL~~hAYcE~PDivlcGNK~DL~~~R------------~Vs~~qa~~L  150 (219)
T KOG0081|consen   84 TTAFFRDAMGFLLIFDLTSEQSFLNVR-NWLSQLQTHAYCENPDIVLCGNKADLEDQR------------VVSEDQAAAL  150 (219)
T ss_pred             HHHHHHhhccceEEEeccchHHHHHHH-HHHHHHHHhhccCCCCEEEEcCccchhhhh------------hhhHHHHHHH
Confidence            999999999999999999999999998 8999998766  788899999999999887            8999999999


Q ss_pred             HHHcCCceEEEcccCCCCCHHHHHHHHHHHHHhhccc
Q psy15714        166 RRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQDK  202 (205)
Q Consensus       166 ~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~~  202 (205)
                      +.+++++ |+|+||-+|.|+++..+.++..+++..++
T Consensus       151 a~kyglP-YfETSA~tg~Nv~kave~LldlvM~Rie~  186 (219)
T KOG0081|consen  151 ADKYGLP-YFETSACTGTNVEKAVELLLDLVMKRIEQ  186 (219)
T ss_pred             HHHhCCC-eeeeccccCcCHHHHHHHHHHHHHHHHHH
Confidence            9999999 99999999999999999999888876543

>cd01892 Miro2 Miro2 subfamily

Probab=100.00  E-value=2.7e-32  Score=194.14  Aligned_cols=164  Identities=21%  Similarity=0.274  Sum_probs=139.4

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCC-CCCcCccccccc-eeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEE
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTENKFP-TDYVPTVFDNYP-DTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCF   98 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~-~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   98 (205)
                      .+.+||+++|.+|+|||||+++|.++.+. ..+.+|.+..+. ..+.+++..+.+.+||++|++.+..++..+++.+|++
T Consensus         2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~   81 (169)
T cd01892           2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA   81 (169)
T ss_pred             CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence            45789999999999999999999999998 888999887764 5677888889999999999999998888899999999


Q ss_pred             EEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcc
Q psy15714         99 LLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECS  178 (205)
Q Consensus        99 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  178 (205)
                      ++|||++++.+++.+. .|+..+... .++|+++|+||+|+....            .....+...+++.++...++++|
T Consensus        82 llv~d~~~~~s~~~~~-~~~~~~~~~-~~~p~iiv~NK~Dl~~~~------------~~~~~~~~~~~~~~~~~~~~~~S  147 (169)
T cd01892          82 CLVYDSSDPKSFSYCA-EVYKKYFML-GEIPCLFVAAKADLDEQQ------------QRYEVQPDEFCRKLGLPPPLHFS  147 (169)
T ss_pred             EEEEeCCCHHHHHHHH-HHHHHhccC-CCCeEEEEEEcccccccc------------cccccCHHHHHHHcCCCCCEEEE
Confidence            9999999999999886 787765332 479999999999986543            33344566777777775579999


Q ss_pred             cCCCCCHHHHHHHHHHHHHh
Q psy15714        179 AKLNEGLDQVFIAAVRSAVK  198 (205)
Q Consensus       179 a~~~~~i~~~~~~i~~~~~~  198 (205)
                      |++++|++++|+.+.+.+.+
T Consensus       148 a~~~~~v~~lf~~l~~~~~~  167 (169)
T cd01892         148 SKLGDSSNELFTKLATAAQY  167 (169)
T ss_pred             eccCccHHHHHHHHHHHhhC
Confidence            99999999999999998764

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>smart00175 RAB Rab subfamily of small GTPases

Probab=100.00  E-value=4.2e-32  Score=192.09  Aligned_cols=161  Identities=34%  Similarity=0.579  Sum_probs=141.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEE
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCF  102 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~  102 (205)
                      +||+++|++|+|||||++++.+..+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..+++.+|++++||
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence            5899999999999999999999998777777776655 456777888889999999999999998899999999999999


Q ss_pred             ECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCC
Q psy15714        103 SIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKL  181 (205)
Q Consensus       103 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  181 (205)
                      |++++.+++.+. .|+..+..+. +++|+++|+||+|+....            .+..++++.+++..+.. ++++||.+
T Consensus        81 d~~~~~s~~~~~-~~l~~~~~~~~~~~pivvv~nK~D~~~~~------------~~~~~~~~~~~~~~~~~-~~e~Sa~~  146 (164)
T smart00175       81 DITNRESFENLK-NWLKELREYADPNVVIMLVGNKSDLEDQR------------QVSREEAEAFAEEHGLP-FFETSAKT  146 (164)
T ss_pred             ECCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEEchhccccc------------CCCHHHHHHHHHHcCCe-EEEEeCCC
Confidence            999999999987 6999988776 789999999999987643            56777888888888876 99999999


Q ss_pred             CCCHHHHHHHHHHHHHh
Q psy15714        182 NEGLDQVFIAAVRSAVK  198 (205)
Q Consensus       182 ~~~i~~~~~~i~~~~~~  198 (205)
                      ++|++++|+++.+.+.+
T Consensus       147 ~~~i~~l~~~i~~~~~~  163 (164)
T smart00175      147 NTNVEEAFEELAREILK  163 (164)
T ss_pred             CCCHHHHHHHHHHHHhh
Confidence            99999999999988754

Rab GTPases are implicated in vesicle trafficking.

>cd01862 Rab7 Rab7 subfamily

Probab=100.00  E-value=6.6e-32  Score=192.56  Aligned_cols=164  Identities=31%  Similarity=0.551  Sum_probs=141.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEE
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCF  102 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~  102 (205)
                      +||+++|++|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+..++..+++.+|++|++|
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   80 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence            5899999999999999999999998887777776555 456778888899999999999999999989999999999999


Q ss_pred             ECCCcchHHHHHHHHHHHHhhhC-----CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEc
Q psy15714        103 SIGSTSSYENILSKWYPELKHHC-----PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLEC  177 (205)
Q Consensus       103 d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (205)
                      |++++.+++++. .|...+....     .++|+++|+||+|+..+.            ..+.++.+.+.+..+..+++++
T Consensus        81 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~~~~~~  147 (172)
T cd01862          81 DVTNPKSFESLD-SWRDEFLIQASPSDPENFPFVVLGNKIDLEEKR------------QVSTKKAQQWCQSNGNIPYFET  147 (172)
T ss_pred             ECCCHHHHHHHH-HHHHHHHHhcCccCCCCceEEEEEECccccccc------------ccCHHHHHHHHHHcCCceEEEE
Confidence            999999998876 7877665544     279999999999997533            5667778888888876669999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHhhc
Q psy15714        178 SAKLNEGLDQVFIAAVRSAVKKQ  200 (205)
Q Consensus       178 Sa~~~~~i~~~~~~i~~~~~~~~  200 (205)
                      ||++|.|++++|+++.+.+.+..
T Consensus       148 Sa~~~~gv~~l~~~i~~~~~~~~  170 (172)
T cd01862         148 SAKEAINVEQAFETIARKALEQE  170 (172)
T ss_pred             ECCCCCCHHHHHHHHHHHHHhcc
Confidence            99999999999999999988764

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd01860 Rab5_related Rab5-related subfamily

Probab=100.00  E-value=7e-32  Score=190.85  Aligned_cols=160  Identities=32%  Similarity=0.577  Sum_probs=141.4

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEE
Q psy15714         23 ALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLC  101 (205)
Q Consensus        23 ~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v  101 (205)
                      ++||+++|++|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||+||++++...+..+++++|++++|
T Consensus         1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   80 (163)
T cd01860           1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV   80 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence            47999999999999999999999998876777777655 56778889999999999999999998888899999999999


Q ss_pred             EECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccC
Q psy15714        102 FSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAK  180 (205)
Q Consensus       102 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  180 (205)
                      ||+++++++..+. .|+..+.... +++|+++++||+|+....            ....++...+.+..+.. ++++||+
T Consensus        81 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~~iivv~nK~D~~~~~------------~~~~~~~~~~~~~~~~~-~~~~Sa~  146 (163)
T cd01860          81 YDITSEESFEKAK-SWVKELQRNASPNIIIALVGNKADLESKR------------QVSTEEAQEYADENGLL-FFETSAK  146 (163)
T ss_pred             EECcCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEECccccccC------------cCCHHHHHHHHHHcCCE-EEEEECC
Confidence            9999999999987 8888887766 789999999999987543            56677788888888855 9999999


Q ss_pred             CCCCHHHHHHHHHHHH
Q psy15714        181 LNEGLDQVFIAAVRSA  196 (205)
Q Consensus       181 ~~~~i~~~~~~i~~~~  196 (205)
                      +|.|++++|+++++.+
T Consensus       147 ~~~~v~~l~~~l~~~l  162 (163)
T cd01860         147 TGENVNELFTEIAKKL  162 (163)
T ss_pred             CCCCHHHHHHHHHHHh
Confidence            9999999999999875

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=100.00  E-value=5.8e-32  Score=191.49  Aligned_cols=159  Identities=26%  Similarity=0.495  Sum_probs=135.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcC--CCCCCCcCcccccc-ceeEEEC-CEEEEEEEEEcCCCcccccccccCcCCCcEEE
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTEN--KFPTDYVPTVFDNY-PDTITVD-NKTYDVTLWDTAGQEDYERLRPMSYPNTDCFL   99 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~--~~~~~~~~t~~~~~-~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   99 (205)
                      +||+++|++|+|||||++++..+  .+...+.++.+..+ ...+.++ +..+++.+||+||++.++.+++.++..+|+++
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii   80 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence            58999999999999999999865  67778888886555 3444453 67799999999999999988889999999999


Q ss_pred             EEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEccc
Q psy15714        100 LCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSA  179 (205)
Q Consensus       100 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  179 (205)
                      +|||++++.++..+. .|+..+.....++|+++|+||+|+....            .+...+++.++...+.. ++++||
T Consensus        81 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~-~~~~Sa  146 (164)
T cd04101          81 LVYDVSNKASFENCS-RWVNKVRTASKHMPGVLVGNKMDLADKA------------EVTDAQAQAFAQANQLK-FFKTSA  146 (164)
T ss_pred             EEEECcCHHHHHHHH-HHHHHHHHhCCCCCEEEEEECccccccc------------CCCHHHHHHHHHHcCCe-EEEEeC
Confidence            999999999999886 8999888776789999999999997653            56666677777777765 999999


Q ss_pred             CCCCCHHHHHHHHHHHH
Q psy15714        180 KLNEGLDQVFIAAVRSA  196 (205)
Q Consensus       180 ~~~~~i~~~~~~i~~~~  196 (205)
                      +++.|++++|+.+.+.+
T Consensus       147 ~~~~gi~~l~~~l~~~~  163 (164)
T cd04101         147 LRGVGYEEPFESLARAF  163 (164)
T ss_pred             CCCCChHHHHHHHHHHh
Confidence            99999999999998875

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>PLN03118 Rab family protein; Provisional

Probab=100.00  E-value=1.5e-31  Score=196.76  Aligned_cols=166  Identities=29%  Similarity=0.497  Sum_probs=141.9

Q ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEE
Q psy15714         20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCF   98 (205)
Q Consensus        20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   98 (205)
                      ....+||+++|.+|+|||||+++|..+.+. .+.++.+..+ ...+.+++..+.+.+||+||++.+..++..+++.+|++
T Consensus        11 ~~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~   89 (211)
T PLN03118         11 YDLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGI   89 (211)
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence            445799999999999999999999998874 4566666555 35567788889999999999999999999999999999


Q ss_pred             EEEEECCCcchHHHHHHHHHHHHhhhC--CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEE
Q psy15714         99 LLCFSIGSTSSYENILSKWYPELKHHC--PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLE  176 (205)
Q Consensus        99 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (205)
                      |+|||+++++++.++...|...+....  .+.|+++|+||+|+....            .+..+++..+++..+.. +++
T Consensus        90 vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~------------~i~~~~~~~~~~~~~~~-~~e  156 (211)
T PLN03118         90 ILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESER------------DVSREEGMALAKEHGCL-FLE  156 (211)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccC------------ccCHHHHHHHHHHcCCE-EEE
Confidence            999999999999999867887776543  468999999999997654            56777888888888776 999


Q ss_pred             cccCCCCCHHHHHHHHHHHHHhh
Q psy15714        177 CSAKLNEGLDQVFIAAVRSAVKK  199 (205)
Q Consensus       177 ~Sa~~~~~i~~~~~~i~~~~~~~  199 (205)
                      +||+++.|++++|+++.+.+...
T Consensus       157 ~SAk~~~~v~~l~~~l~~~~~~~  179 (211)
T PLN03118        157 CSAKTRENVEQCFEELALKIMEV  179 (211)
T ss_pred             EeCCCCCCHHHHHHHHHHHHHhh
Confidence            99999999999999999888653

>cd01861 Rab6 Rab6 subfamily

Probab=100.00  E-value=1.1e-31  Score=189.44  Aligned_cols=158  Identities=30%  Similarity=0.536  Sum_probs=137.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEE
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCF  102 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~  102 (205)
                      +||+++|++++|||||++++.+..+...+.++.+.++ ...+.+++..+++.+||+||+..++..+..+++.+|++++||
T Consensus         1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~   80 (161)
T cd01861           1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence            4899999999999999999999998777777776555 456777888889999999999999998889999999999999


Q ss_pred             ECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCC
Q psy15714        103 SIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKL  181 (205)
Q Consensus       103 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  181 (205)
                      |+++++++..+. .|+..+.... .+.|+++++||+|+....            ....++...+++..+.. ++++||++
T Consensus        81 d~~~~~s~~~~~-~~~~~~~~~~~~~~~iilv~nK~D~~~~~------------~~~~~~~~~~~~~~~~~-~~~~Sa~~  146 (161)
T cd01861          81 DITNRQSFDNTD-KWIDDVRDERGNDVIIVLVGNKTDLSDKR------------QVSTEEGEKKAKELNAM-FIETSAKA  146 (161)
T ss_pred             ECcCHHHHHHHH-HHHHHHHHhCCCCCEEEEEEEChhccccC------------ccCHHHHHHHHHHhCCE-EEEEeCCC
Confidence            999999999987 7888876655 479999999999996443            66777888888888765 99999999


Q ss_pred             CCCHHHHHHHHHHH
Q psy15714        182 NEGLDQVFIAAVRS  195 (205)
Q Consensus       182 ~~~i~~~~~~i~~~  195 (205)
                      ++|++++|+++.+.
T Consensus       147 ~~~v~~l~~~i~~~  160 (161)
T cd01861         147 GHNVKELFRKIASA  160 (161)
T ss_pred             CCCHHHHHHHHHHh
Confidence            99999999999864

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>KOG0097|consensus

Probab=100.00  E-value=4.2e-32  Score=178.80  Aligned_cols=170  Identities=28%  Similarity=0.484  Sum_probs=156.0

Q ss_pred             cccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCc
Q psy15714         18 KSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTD   96 (205)
Q Consensus        18 ~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   96 (205)
                      -....-+|.+++|+-|+|||+|+..|...+|...-+.|++..+ ...+.+.|+.++++|||++|+++|+...+.+++.+.
T Consensus         6 ynysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaa   85 (215)
T KOG0097|consen    6 YNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAA   85 (215)
T ss_pred             cchhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhcccc
Confidence            3456789999999999999999999999999888888998888 577889999999999999999999999999999999


Q ss_pred             EEEEEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEE
Q psy15714         97 CFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYL  175 (205)
Q Consensus        97 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (205)
                      +.+.|||++.+.++..+. .|+...+... ++..+++++||.||...+            .++.++++.++.+.+.. ++
T Consensus        86 galmvyditrrstynhls-swl~dar~ltnpnt~i~lignkadle~qr------------dv~yeeak~faeengl~-fl  151 (215)
T KOG0097|consen   86 GALMVYDITRRSTYNHLS-SWLTDARNLTNPNTVIFLIGNKADLESQR------------DVTYEEAKEFAEENGLM-FL  151 (215)
T ss_pred             ceeEEEEehhhhhhhhHH-HHHhhhhccCCCceEEEEecchhhhhhcc------------cCcHHHHHHHHhhcCeE-EE
Confidence            999999999999999987 7988887766 889999999999999876            89999999999999999 99


Q ss_pred             EcccCCCCCHHHHHHHHHHHHHhhcc
Q psy15714        176 ECSAKLNEGLDQVFIAAVRSAVKKQD  201 (205)
Q Consensus       176 ~~Sa~~~~~i~~~~~~i~~~~~~~~~  201 (205)
                      ++||++|.++++.|.+....+....+
T Consensus       152 e~saktg~nvedafle~akkiyqniq  177 (215)
T KOG0097|consen  152 EASAKTGQNVEDAFLETAKKIYQNIQ  177 (215)
T ss_pred             EecccccCcHHHHHHHHHHHHHHhhh
Confidence            99999999999999998888877544

>cd04148 RGK RGK subfamily

Probab=100.00  E-value=2.5e-31  Score=196.63  Aligned_cols=160  Identities=26%  Similarity=0.386  Sum_probs=135.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCC-CCCcCccc-cccceeEEECCEEEEEEEEEcCCCcccccccccCcC-CCcEEEE
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTENKFP-TDYVPTVF-DNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYP-NTDCFLL  100 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~~~~-~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~-~~~~~i~  100 (205)
                      +||+++|++|+|||||+++|..+.+. ..+.++.+ +.+...+.+++..+.+.+||++|++.  .....++. .+|++++
T Consensus         1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~iil   78 (221)
T cd04148           1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQGDAFVV   78 (221)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCCCEEEE
Confidence            58999999999999999999988886 66667665 44466788888899999999999983  23344556 8999999


Q ss_pred             EEECCCcchHHHHHHHHHHHHhhhC--CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcc
Q psy15714        101 CFSIGSTSSYENILSKWYPELKHHC--PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECS  178 (205)
Q Consensus       101 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  178 (205)
                      |||++++.+++.+. .|+..+....  .++|+++|+||+|+...+            .++.++++.++...++. ++++|
T Consensus        79 V~d~td~~S~~~~~-~~~~~l~~~~~~~~~piilV~NK~Dl~~~~------------~v~~~~~~~~a~~~~~~-~~e~S  144 (221)
T cd04148          79 VYSVTDRSSFERAS-ELRIQLRRNRQLEDRPIILVGNKSDLARSR------------EVSVQEGRACAVVFDCK-FIETS  144 (221)
T ss_pred             EEECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEEChhccccc------------eecHHHHHHHHHHcCCe-EEEec
Confidence            99999999999987 7888887654  589999999999997654            67778888888888876 99999


Q ss_pred             cCCCCCHHHHHHHHHHHHHhh
Q psy15714        179 AKLNEGLDQVFIAAVRSAVKK  199 (205)
Q Consensus       179 a~~~~~i~~~~~~i~~~~~~~  199 (205)
                      |+++.|++++|+++++.+...
T Consensus       145 A~~~~gv~~l~~~l~~~~~~~  165 (221)
T cd04148         145 AGLQHNVDELLEGIVRQIRLR  165 (221)
T ss_pred             CCCCCCHHHHHHHHHHHHHhh
Confidence            999999999999999988643

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>KOG0395|consensus

Probab=100.00  E-value=1.6e-31  Score=192.78  Aligned_cols=164  Identities=39%  Similarity=0.595  Sum_probs=151.6

Q ss_pred             eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEE
Q psy15714         22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLC  101 (205)
Q Consensus        22 ~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v  101 (205)
                      ..+||+++|.+|+|||+|+.+|..+.|.+.|.||+++.+.+.+.+++..+.+.|+|++|+++|..+...++.+.+++++|
T Consensus         2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lV   81 (196)
T KOG0395|consen    2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLV   81 (196)
T ss_pred             CceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEE
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EECCCcchHHHHHHHHHHHH-hhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEccc
Q psy15714        102 FSIGSTSSYENILSKWYPEL-KHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSA  179 (205)
Q Consensus       102 ~d~~~~~s~~~~~~~~~~~~-~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  179 (205)
                      |+++++.||+.+. .+...+ +... ..+|+++||||+|+...+            .++.++++.+++.+++. |+|+||
T Consensus        82 ysitd~~SF~~~~-~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R------------~V~~eeg~~la~~~~~~-f~E~Sa  147 (196)
T KOG0395|consen   82 YSITDRSSFEEAK-QLREQILRVKGRDDVPIILVGNKCDLERER------------QVSEEEGKALARSWGCA-FIETSA  147 (196)
T ss_pred             EECCCHHHHHHHH-HHHHHHHHhhCcCCCCEEEEEEcccchhcc------------ccCHHHHHHHHHhcCCc-EEEeec
Confidence            9999999999998 455555 3333 678999999999998875            89999999999999999 999999


Q ss_pred             CCCCCHHHHHHHHHHHHHhh
Q psy15714        180 KLNEGLDQVFIAAVRSAVKK  199 (205)
Q Consensus       180 ~~~~~i~~~~~~i~~~~~~~  199 (205)
                      +.+.+++++|..+++.+...
T Consensus       148 k~~~~v~~~F~~L~r~~~~~  167 (196)
T KOG0395|consen  148 KLNYNVDEVFYELVREIRLP  167 (196)
T ss_pred             cCCcCHHHHHHHHHHHHHhh
Confidence            99999999999999988773

>cd01863 Rab18 Rab18 subfamily

Probab=100.00  E-value=3.7e-31  Score=186.86  Aligned_cols=157  Identities=32%  Similarity=0.562  Sum_probs=137.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEE
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCF  102 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~  102 (205)
                      +||+++|++|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|++++||
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence            5899999999999999999999998777777777665 345667788899999999999999888888999999999999


Q ss_pred             ECCCcchHHHHHHHHHHHHhhhC--CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccC
Q psy15714        103 SIGSTSSYENILSKWYPELKHHC--PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAK  180 (205)
Q Consensus       103 d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  180 (205)
                      |++++.+++.+. .|+..+..+.  .++|+++|+||+|+...             ....++...+++..+.. ++++||+
T Consensus        81 d~~~~~s~~~~~-~~~~~i~~~~~~~~~~~~iv~nK~D~~~~-------------~~~~~~~~~~~~~~~~~-~~~~Sa~  145 (161)
T cd01863          81 DVTRRDTFTNLE-TWLNELETYSTNNDIVKMLVGNKIDKENR-------------EVTREEGLKFARKHNML-FIETSAK  145 (161)
T ss_pred             ECCCHHHHHhHH-HHHHHHHHhCCCCCCcEEEEEECCccccc-------------ccCHHHHHHHHHHcCCE-EEEEecC
Confidence            999999999987 6988887765  68999999999999743             45667788888887766 9999999


Q ss_pred             CCCCHHHHHHHHHHH
Q psy15714        181 LNEGLDQVFIAAVRS  195 (205)
Q Consensus       181 ~~~~i~~~~~~i~~~  195 (205)
                      +|.|++++|+++++.
T Consensus       146 ~~~gi~~~~~~~~~~  160 (161)
T cd01863         146 TRDGVQQAFEELVEK  160 (161)
T ss_pred             CCCCHHHHHHHHHHh
Confidence            999999999998875

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd04123 Rab21 Rab21 subfamily

Probab=100.00  E-value=3.6e-31  Score=186.79  Aligned_cols=159  Identities=33%  Similarity=0.626  Sum_probs=137.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEE
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCF  102 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~  102 (205)
                      +||+++|++|+|||||++++.++.+...+.++....+ ...+...+..+.+.+||+||++.+..+++.+++++|++++||
T Consensus         1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence            5899999999999999999999998776666665544 455667788889999999999999999988999999999999


Q ss_pred             ECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCC
Q psy15714        103 SIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKL  181 (205)
Q Consensus       103 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  181 (205)
                      |+++++++..+. .|+..+.... .++|+++++||+|+....            .+..++...+++..+.. ++++||++
T Consensus        81 d~~~~~s~~~~~-~~~~~i~~~~~~~~piiiv~nK~D~~~~~------------~~~~~~~~~~~~~~~~~-~~~~s~~~  146 (162)
T cd04123          81 DITDADSFQKVK-KWIKELKQMRGNNISLVIVGNKIDLERQR------------VVSKSEAEEYAKSVGAK-HFETSAKT  146 (162)
T ss_pred             ECCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEECccccccc------------CCCHHHHHHHHHHcCCE-EEEEeCCC
Confidence            999999999987 7888887766 479999999999987543            56667777788877776 99999999


Q ss_pred             CCCHHHHHHHHHHHH
Q psy15714        182 NEGLDQVFIAAVRSA  196 (205)
Q Consensus       182 ~~~i~~~~~~i~~~~  196 (205)
                      ++|++++|+++.+.+
T Consensus       147 ~~gi~~~~~~l~~~~  161 (162)
T cd04123         147 GKGIEELFLSLAKRM  161 (162)
T ss_pred             CCCHHHHHHHHHHHh
Confidence            999999999998765

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.98  E-value=7.3e-31  Score=185.65  Aligned_cols=161  Identities=32%  Similarity=0.533  Sum_probs=139.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEEE
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFS  103 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d  103 (205)
                      +||+++|++|+|||||++++..+.+...+.++....+......++..+.+.+||+||+..+...+..+++.++++++|||
T Consensus         1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d   80 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFS   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEE
Confidence            58999999999999999999999998888888877777777888889999999999999999999999999999999999


Q ss_pred             CCCcchHHHHHHHHHHHHhhhC--CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCC
Q psy15714        104 IGSTSSYENILSKWYPELKHHC--PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKL  181 (205)
Q Consensus       104 ~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  181 (205)
                      ++++.++..+. .|...+....  .++|+++|+||+|+....            ....++.+.+.+.++.. ++++||++
T Consensus        81 ~~~~~s~~~~~-~~~~~~~~~~~~~~~piiiv~NK~D~~~~~------------~~~~~~~~~~~~~~~~~-~~~~Sa~~  146 (164)
T cd04139          81 ITDMESFTATA-EFREQILRVKDDDNVPLLLVGNKCDLEDKR------------QVSSEEAANLARQWGVP-YVETSAKT  146 (164)
T ss_pred             CCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEEcccccccc------------ccCHHHHHHHHHHhCCe-EEEeeCCC
Confidence            99999999987 5666665542  589999999999997632            45566677777777765 99999999


Q ss_pred             CCCHHHHHHHHHHHHHh
Q psy15714        182 NEGLDQVFIAAVRSAVK  198 (205)
Q Consensus       182 ~~~i~~~~~~i~~~~~~  198 (205)
                      ++|++++|+++.+.+..
T Consensus       147 ~~gi~~l~~~l~~~~~~  163 (164)
T cd04139         147 RQNVEKAFYDLVREIRQ  163 (164)
T ss_pred             CCCHHHHHHHHHHHHHh
Confidence            99999999999987753

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.98  E-value=5.7e-31  Score=189.17  Aligned_cols=161  Identities=18%  Similarity=0.205  Sum_probs=123.1

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEE
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLL  100 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~  100 (205)
                      ++.+||+++|.+++|||||++++..+.+. .+.||.+..+. .+..  ..+.+.+||+||++.++.++..+++++|++|+
T Consensus        15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~-~~~~--~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~   90 (181)
T PLN00223         15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF   90 (181)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEE-EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence            45689999999999999999999988875 35677665442 3333  34789999999999999999999999999999


Q ss_pred             EEECCCcchHHHHHHHHHHHHhhh-CCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHc----CCceEE
Q psy15714        101 CFSIGSTSSYENILSKWYPELKHH-CPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKI----KAAEYL  175 (205)
Q Consensus       101 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~  175 (205)
                      |||++++.++.++...+...+... .+++|++|++||+|+....              ..++......-.    ....++
T Consensus        91 V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~--------------~~~~~~~~l~l~~~~~~~~~~~  156 (181)
T PLN00223         91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--------------NAAEITDKLGLHSLRQRHWYIQ  156 (181)
T ss_pred             EEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCC--------------CHHHHHHHhCccccCCCceEEE
Confidence            999999999998874444444332 2689999999999987532              222222221111    112366


Q ss_pred             EcccCCCCCHHHHHHHHHHHHHhh
Q psy15714        176 ECSAKLNEGLDQVFIAAVRSAVKK  199 (205)
Q Consensus       176 ~~Sa~~~~~i~~~~~~i~~~~~~~  199 (205)
                      ++||++|+|++++|+||.+.+.++
T Consensus       157 ~~Sa~~g~gv~e~~~~l~~~~~~~  180 (181)
T PLN00223        157 STCATSGEGLYEGLDWLSNNIANK  180 (181)
T ss_pred             eccCCCCCCHHHHHHHHHHHHhhc
Confidence            899999999999999999988765

>KOG0083|consensus

Probab=99.98  E-value=5e-33  Score=181.30  Aligned_cols=158  Identities=31%  Similarity=0.580  Sum_probs=145.5

Q ss_pred             EEECCCCCCHHHHHHHHhcCCCC-CCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEEEC
Q psy15714         27 TTVGDGMVGKTCLLITHTENKFP-TDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSI  104 (205)
Q Consensus        27 ~v~G~~~~GKstli~~~~~~~~~-~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~  104 (205)
                      +++|++++|||+|+-+|.++.|- .+..+|.+.++ .+.+..++..+++++||++|+++|++....+++.+|+++++||+
T Consensus         1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi   80 (192)
T KOG0083|consen    1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI   80 (192)
T ss_pred             CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence            36899999999999888888774 56788888888 57888999999999999999999999999999999999999999


Q ss_pred             CCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCCCC
Q psy15714        105 GSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNE  183 (205)
Q Consensus       105 ~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  183 (205)
                      .++.||++.. .|+..+.++. ..+.+.+++||+|+...+            .+..++++.+++.++++ ++++||++|.
T Consensus        81 ankasfdn~~-~wlsei~ey~k~~v~l~llgnk~d~a~er------------~v~~ddg~kla~~y~ip-fmetsaktg~  146 (192)
T KOG0083|consen   81 ANKASFDNCQ-AWLSEIHEYAKEAVALMLLGNKCDLAHER------------AVKRDDGEKLAEAYGIP-FMETSAKTGF  146 (192)
T ss_pred             ccchhHHHHH-HHHHHHHHHHHhhHhHhhhccccccchhh------------ccccchHHHHHHHHCCC-ceeccccccc
Confidence            9999999987 8999999988 678899999999998876            78889999999999999 9999999999


Q ss_pred             CHHHHHHHHHHHHHh
Q psy15714        184 GLDQVFIAAVRSAVK  198 (205)
Q Consensus       184 ~i~~~~~~i~~~~~~  198 (205)
                      |++-.|..|.+.+.+
T Consensus       147 nvd~af~~ia~~l~k  161 (192)
T KOG0083|consen  147 NVDLAFLAIAEELKK  161 (192)
T ss_pred             cHhHHHHHHHHHHHH
Confidence            999999999988776

>cd01893 Miro1 Miro1 subfamily

Probab=99.98  E-value=9.8e-31  Score=185.67  Aligned_cols=164  Identities=24%  Similarity=0.395  Sum_probs=129.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEEE
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFS  103 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d  103 (205)
                      +||+++|.+|+|||||++++..+.+...+..+ ...+.....+++..+.+.+||+||++.++..+..++..+|++++|||
T Consensus         1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   79 (166)
T cd01893           1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRV-LPEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYS   79 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCccCCCc-ccceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEE
Confidence            48999999999999999999999987654433 33334445567778999999999999888777777899999999999


Q ss_pred             CCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcC-CceEEEcccCCC
Q psy15714        104 IGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIK-AAEYLECSAKLN  182 (205)
Q Consensus       104 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~  182 (205)
                      ++++.+++.+...|+..++...+++|+++|+||+|+......          ....++...++..+. ..+++++||+++
T Consensus        80 ~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~----------~~~~~~~~~~~~~~~~~~~~~e~Sa~~~  149 (166)
T cd01893          80 VDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQ----------AGLEEEMLPIMNEFREIETCVECSAKTL  149 (166)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccch----------hHHHHHHHHHHHHHhcccEEEEeccccc
Confidence            999999999866899988876678999999999999765321          011223333333333 335999999999


Q ss_pred             CCHHHHHHHHHHHHHh
Q psy15714        183 EGLDQVFIAAVRSAVK  198 (205)
Q Consensus       183 ~~i~~~~~~i~~~~~~  198 (205)
                      .|++++|+.+...+.+
T Consensus       150 ~~v~~lf~~~~~~~~~  165 (166)
T cd01893         150 INVSEVFYYAQKAVLH  165 (166)
T ss_pred             cCHHHHHHHHHHHhcC
Confidence            9999999999988764

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04149 Arf6 Arf6 subfamily

Probab=99.98  E-value=2.4e-31  Score=189.07  Aligned_cols=156  Identities=17%  Similarity=0.212  Sum_probs=121.5

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEE
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLL  100 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~  100 (205)
                      .+.+||+++|.+++|||||++++..+.+.. +.+|.+..+. .+..  ..+.+++||+||+++++.+++.+++.+|++|+
T Consensus         7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~~-~~~t~g~~~~-~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~   82 (168)
T cd04149           7 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVE-TVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF   82 (168)
T ss_pred             CCccEEEEECcCCCCHHHHHHHHccCCCcc-ccCCcccceE-EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence            356899999999999999999999887753 5666665442 2333  45889999999999999999999999999999


Q ss_pred             EEECCCcchHHHHHHHHHHHHhhh-CCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHH---c-CCceEE
Q psy15714        101 CFSIGSTSSYENILSKWYPELKHH-CPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRK---I-KAAEYL  175 (205)
Q Consensus       101 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~  175 (205)
                      |||++++.++.++...|...+... .+++|+++|+||+|+..              .++.++++.+...   . ...+++
T Consensus        83 v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--------------~~~~~~i~~~~~~~~~~~~~~~~~  148 (168)
T cd04149          83 VVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPD--------------AMKPHEIQEKLGLTRIRDRNWYVQ  148 (168)
T ss_pred             EEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCcc--------------CCCHHHHHHHcCCCccCCCcEEEE
Confidence            999999999999875555555443 26799999999999864              2344455444321   1 122489


Q ss_pred             EcccCCCCCHHHHHHHHHH
Q psy15714        176 ECSAKLNEGLDQVFIAAVR  194 (205)
Q Consensus       176 ~~Sa~~~~~i~~~~~~i~~  194 (205)
                      ++||++|.|++++|+||.+
T Consensus       149 ~~SAk~g~gv~~~~~~l~~  167 (168)
T cd04149         149 PSCATSGDGLYEGLTWLSS  167 (168)
T ss_pred             EeeCCCCCChHHHHHHHhc
Confidence            9999999999999999864

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd04114 Rab30 Rab30 subfamily

Probab=99.97  E-value=2.5e-30  Score=183.94  Aligned_cols=162  Identities=27%  Similarity=0.499  Sum_probs=137.7

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEE
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFL   99 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   99 (205)
                      ...+||+++|++|+|||||++++..+.+.+.+.++.+..+ ...+.+++..+.+.+||+||+..++..+..++..+|+++
T Consensus         5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   84 (169)
T cd04114           5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALI   84 (169)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence            4569999999999999999999998888776666665444 446678888899999999999999988888999999999


Q ss_pred             EEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcc
Q psy15714        100 LCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECS  178 (205)
Q Consensus       100 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  178 (205)
                      +|||+++..+++.+. .|+..+.... .++|+++|+||+|+...+            .+..+..+.+.+..... ++++|
T Consensus        85 ~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~~~i~v~NK~D~~~~~------------~i~~~~~~~~~~~~~~~-~~~~S  150 (169)
T cd04114          85 LTYDITCEESFRCLP-EWLREIEQYANNKVITILVGNKIDLAERR------------EVSQQRAEEFSDAQDMY-YLETS  150 (169)
T ss_pred             EEEECcCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEECccccccc------------ccCHHHHHHHHHHcCCe-EEEee
Confidence            999999999999887 8988887766 479999999999987644            56666677777766644 99999


Q ss_pred             cCCCCCHHHHHHHHHHHH
Q psy15714        179 AKLNEGLDQVFIAAVRSA  196 (205)
Q Consensus       179 a~~~~~i~~~~~~i~~~~  196 (205)
                      |++|.|++++|+++.+.+
T Consensus       151 a~~~~gv~~l~~~i~~~~  168 (169)
T cd04114         151 AKESDNVEKLFLDLACRL  168 (169)
T ss_pred             CCCCCCHHHHHHHHHHHh
Confidence            999999999999998764

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.97  E-value=4.3e-30  Score=184.65  Aligned_cols=164  Identities=30%  Similarity=0.494  Sum_probs=138.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEEE
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFS  103 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d  103 (205)
                      .||+++|.+|+|||||++++..+.+...+.++....+...+..++..+.+.+||+||+++++..+..++..+++++++||
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d   81 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYS   81 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEE
Confidence            58999999999999999999999988878888776666677788888899999999999999888889999999999999


Q ss_pred             CCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCCC
Q psy15714        104 IGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLN  182 (205)
Q Consensus       104 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  182 (205)
                      +++..+++.+...|...++... .+.|+++|+||+|+...+            .+..++...+++.++.. ++++||+++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~------------~~~~~~~~~~~~~~~~~-~~~~Sa~~~  148 (180)
T cd04137          82 VTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQR------------QVSTEEGKELAESWGAA-FLESSAREN  148 (180)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcC------------ccCHHHHHHHHHHcCCe-EEEEeCCCC
Confidence            9999999998844444444333 578999999999987543            55566677777777755 999999999


Q ss_pred             CCHHHHHHHHHHHHHhhc
Q psy15714        183 EGLDQVFIAAVRSAVKKQ  200 (205)
Q Consensus       183 ~~i~~~~~~i~~~~~~~~  200 (205)
                      .|++++|.++.+.+....
T Consensus       149 ~gv~~l~~~l~~~~~~~~  166 (180)
T cd04137         149 ENVEEAFELLIEEIEKVE  166 (180)
T ss_pred             CCHHHHHHHHHHHHHHhc
Confidence            999999999999887653

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd00876 Ras Ras family

Probab=99.97  E-value=2.4e-30  Score=182.19  Aligned_cols=157  Identities=37%  Similarity=0.616  Sum_probs=137.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEEEC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSI  104 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~  104 (205)
                      ||+++|++|+|||||++++.+..+...+.++....+......++..+.+.+||+||++.+...+..+++.+|++++|||+
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~   80 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSI   80 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEEC
Confidence            68999999999999999999988888888887766666777787789999999999999988888899999999999999


Q ss_pred             CCcchHHHHHHHHHHHHhhhC--CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCCC
Q psy15714        105 GSTSSYENILSKWYPELKHHC--PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLN  182 (205)
Q Consensus       105 ~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  182 (205)
                      ++++++.++. .|...+....  .++|+++|+||+|+....            .++.++++.+++.++.. ++++||+++
T Consensus        81 ~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~~~-~~~~S~~~~  146 (160)
T cd00876          81 TDRESFEEIK-GYREQILRVKDDEDIPIVLVGNKCDLENER------------QVSKEEGKALAKEWGCP-FIETSAKDN  146 (160)
T ss_pred             CCHHHHHHHH-HHHHHHHHhcCCCCCcEEEEEECCcccccc------------eecHHHHHHHHHHcCCc-EEEeccCCC
Confidence            9999999987 5666665554  489999999999998743            66778888888888855 999999999


Q ss_pred             CCHHHHHHHHHHH
Q psy15714        183 EGLDQVFIAAVRS  195 (205)
Q Consensus       183 ~~i~~~~~~i~~~  195 (205)
                      +|++++|++|.+.
T Consensus       147 ~~i~~l~~~l~~~  159 (160)
T cd00876         147 INIDEVFKLLVRE  159 (160)
T ss_pred             CCHHHHHHHHHhh
Confidence            9999999999875

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.97  E-value=3.6e-30  Score=185.18  Aligned_cols=161  Identities=21%  Similarity=0.259  Sum_probs=123.3

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEE
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLL  100 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~  100 (205)
                      .+.+||+++|++++|||||++++..+.+.. +.+|.+..+. .+..  ..+.+.+||+||++.++..+..+++.+|++|+
T Consensus        15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~-~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~   90 (182)
T PTZ00133         15 KKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE-TVEY--KNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIF   90 (182)
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE-EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence            456899999999999999999999888864 5667665442 3333  44789999999999999999999999999999


Q ss_pred             EEECCCcchHHHHHHHHHHHHhhh-CCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHH-----HHHcCCceE
Q psy15714        101 CFSIGSTSSYENILSKWYPELKHH-CPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKM-----RRKIKAAEY  174 (205)
Q Consensus       101 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~  174 (205)
                      |||++++.++.++...|...+... ..+.|++||+||.|+....              ..++....     .+... ..+
T Consensus        91 v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--------------~~~~i~~~l~~~~~~~~~-~~~  155 (182)
T PTZ00133         91 VVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAM--------------STTEVTEKLGLHSVRQRN-WYI  155 (182)
T ss_pred             EEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCC--------------CHHHHHHHhCCCcccCCc-EEE
Confidence            999999999999875555554432 2579999999999986532              11111111     11111 236


Q ss_pred             EEcccCCCCCHHHHHHHHHHHHHhhc
Q psy15714        175 LECSAKLNEGLDQVFIAAVRSAVKKQ  200 (205)
Q Consensus       175 ~~~Sa~~~~~i~~~~~~i~~~~~~~~  200 (205)
                      +++||++|.|++++|++|.+.+.++.
T Consensus       156 ~~~Sa~tg~gv~e~~~~l~~~i~~~~  181 (182)
T PTZ00133        156 QGCCATTAQGLYEGLDWLSANIKKSM  181 (182)
T ss_pred             EeeeCCCCCCHHHHHHHHHHHHHHhc
Confidence            79999999999999999999887764

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.97  E-value=3.3e-30  Score=184.38  Aligned_cols=158  Identities=19%  Similarity=0.224  Sum_probs=120.6

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEE
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLL  100 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~  100 (205)
                      .+.+||+++|++|+|||||++++..+.+. .+.||++..+. .+...  .+.+.+||+||++.++..+..+++++|++|+
T Consensus        11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~-~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~   86 (175)
T smart00177       11 NKEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVE-TVTYK--NISFTVWDVGGQDKIRPLWRHYYTNTQGLIF   86 (175)
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceE-EEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCEEEE
Confidence            44699999999999999999999888874 45677665543 23333  4789999999999999999999999999999


Q ss_pred             EEECCCcchHHHHHHHHHHHHhhh-CCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHH-----HHHcCCceE
Q psy15714        101 CFSIGSTSSYENILSKWYPELKHH-CPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKM-----RRKIKAAEY  174 (205)
Q Consensus       101 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~  174 (205)
                      |||++++.++++....|...+... ..++|++||+||+|+....              ..++....     ++... ..+
T Consensus        87 v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--------------~~~~i~~~~~~~~~~~~~-~~~  151 (175)
T smart00177       87 VVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAM--------------KAAEITEKLGLHSIRDRN-WYI  151 (175)
T ss_pred             EEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCC--------------CHHHHHHHhCccccCCCc-EEE
Confidence            999999999999884444444433 2679999999999986532              11121111     11112 237


Q ss_pred             EEcccCCCCCHHHHHHHHHHHHH
Q psy15714        175 LECSAKLNEGLDQVFIAAVRSAV  197 (205)
Q Consensus       175 ~~~Sa~~~~~i~~~~~~i~~~~~  197 (205)
                      +++||++|+|++++|+||.+.+.
T Consensus       152 ~~~Sa~~g~gv~e~~~~l~~~~~  174 (175)
T smart00177      152 QPTCATSGDGLYEGLTWLSNNLK  174 (175)
T ss_pred             EEeeCCCCCCHHHHHHHHHHHhc
Confidence            78999999999999999987754

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd04158 ARD1 ARD1 subfamily

Probab=99.97  E-value=5.1e-30  Score=182.51  Aligned_cols=157  Identities=20%  Similarity=0.261  Sum_probs=123.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEEEC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSI  104 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~  104 (205)
                      ||+++|.+++|||||++++.++.+.. +.+|.+..+. .+..  ..+.+.+||+||+..++..+..+++.+|+++||||+
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~-~~~~--~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~   76 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE-TVEY--KNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDS   76 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE-EEEE--CCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeC
Confidence            68999999999999999999987754 5666654442 2333  347899999999999998888899999999999999


Q ss_pred             CCcchHHHHHHHHHHHHhh-h-CCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcC-----CceEEEc
Q psy15714        105 GSTSSYENILSKWYPELKH-H-CPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIK-----AAEYLEC  177 (205)
Q Consensus       105 ~~~~s~~~~~~~~~~~~~~-~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~  177 (205)
                      +++.++.++. .|+..+.. . ..+.|+++|+||+|+..              .++.++++.+++..+     ...++++
T Consensus        77 s~~~s~~~~~-~~~~~~~~~~~~~~~piilv~NK~Dl~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (169)
T cd04158          77 SHRDRVSEAH-SELAKLLTEKELRDALLLIFANKQDVAG--------------ALSVEEMTELLSLHKLCCGRSWYIQGC  141 (169)
T ss_pred             CcHHHHHHHH-HHHHHHhcChhhCCCCEEEEEeCcCccc--------------CCCHHHHHHHhCCccccCCCcEEEEeC
Confidence            9999999987 55555543 2 25689999999999864              345556666554322     1247899


Q ss_pred             ccCCCCCHHHHHHHHHHHHHhhc
Q psy15714        178 SAKLNEGLDQVFIAAVRSAVKKQ  200 (205)
Q Consensus       178 Sa~~~~~i~~~~~~i~~~~~~~~  200 (205)
                      ||++|.|++++|+||.+.+....
T Consensus       142 Sa~~g~gv~~~f~~l~~~~~~~~  164 (169)
T cd04158         142 DARSGMGLYEGLDWLSRQLVAAG  164 (169)
T ss_pred             cCCCCCCHHHHHHHHHHHHhhcc
Confidence            99999999999999998876643

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.97  E-value=8e-30  Score=185.90  Aligned_cols=160  Identities=27%  Similarity=0.398  Sum_probs=132.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEEEC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSI  104 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~  104 (205)
                      ||+++|.+|+|||||++++..+.+...+.++........+.+++..+.+.+||+||+..|..++..++..+|++++|||+
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~   80 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAV   80 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEEC
Confidence            68999999999999999999999988777777655556777888889999999999999998888899999999999999


Q ss_pred             CCcchHHHHHHHHHHHHhhhC--CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHH-HcCCceEEEcccCC
Q psy15714        105 GSTSSYENILSKWYPELKHHC--PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRR-KIKAAEYLECSAKL  181 (205)
Q Consensus       105 ~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~  181 (205)
                      +++.+++.+. .|+..+....  .++|+++|+||+|+.....           .+..++..+... ..+.. ++++||++
T Consensus        81 ~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~-----------~v~~~~~~~~~~~~~~~~-~~~~Sa~~  147 (198)
T cd04147          81 DDPESFEEVE-RLREEILEVKEDKFVPIVVVGNKADSLEEER-----------QVPAKDALSTVELDWNCG-FVETSAKD  147 (198)
T ss_pred             CCHHHHHHHH-HHHHHHHHhcCCCCCcEEEEEEccccccccc-----------cccHHHHHHHHHhhcCCc-EEEecCCC
Confidence            9999999987 7877666654  4799999999999865311           344444444433 33444 89999999


Q ss_pred             CCCHHHHHHHHHHHHH
Q psy15714        182 NEGLDQVFIAAVRSAV  197 (205)
Q Consensus       182 ~~~i~~~~~~i~~~~~  197 (205)
                      |.|++++|+++++.+.
T Consensus       148 g~gv~~l~~~l~~~~~  163 (198)
T cd04147         148 NENVLEVFKELLRQAN  163 (198)
T ss_pred             CCCHHHHHHHHHHHhh
Confidence            9999999999998765

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd00154 Rab Rab family

Probab=99.97  E-value=5.7e-30  Score=179.69  Aligned_cols=157  Identities=35%  Similarity=0.631  Sum_probs=136.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEE
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCF  102 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~  102 (205)
                      +||+++|++++|||||++++.++.+...+.++.+..+ ...+..++..+.+.+||+||+..+...+..+++++|++++|+
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~   80 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY   80 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence            5899999999999999999999999887777776655 456677778899999999999999998899999999999999


Q ss_pred             ECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCC
Q psy15714        103 SIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKL  181 (205)
Q Consensus       103 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  181 (205)
                      |+++++++..+. .|+..+.... .+.|+++++||+|+....            ....++.+.+++..+.. ++++||++
T Consensus        81 d~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~~~-~~~~sa~~  146 (159)
T cd00154          81 DITNRESFENLD-KWLKELKEYAPENIPIILVGNKIDLEDQR------------QVSTEEAQQFAKENGLL-FFETSAKT  146 (159)
T ss_pred             ECCCHHHHHHHH-HHHHHHHHhCCCCCcEEEEEEcccccccc------------cccHHHHHHHHHHcCCe-EEEEecCC
Confidence            999999999987 6998888876 689999999999997332            56778888888877665 99999999


Q ss_pred             CCCHHHHHHHHHH
Q psy15714        182 NEGLDQVFIAAVR  194 (205)
Q Consensus       182 ~~~i~~~~~~i~~  194 (205)
                      +.|++++|.+|.+
T Consensus       147 ~~~i~~~~~~i~~  159 (159)
T cd00154         147 GENVEELFQSLAE  159 (159)
T ss_pred             CCCHHHHHHHHhC
Confidence            9999999999863

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.97  E-value=5.5e-30  Score=180.54  Aligned_cols=153  Identities=19%  Similarity=0.234  Sum_probs=116.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEEE
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFS  103 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d  103 (205)
                      +||+++|.+++|||||++++..+.+.. +.||.+.... .+..  ..+.+.+||+||+++++..+..+++++|+++||||
T Consensus         1 ~kv~~~G~~~~GKTsli~~l~~~~~~~-~~pt~g~~~~-~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D   76 (159)
T cd04150           1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD   76 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCcc-cCCCCCcceE-EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEe
Confidence            489999999999999999998888864 5677665432 2333  35889999999999999999999999999999999


Q ss_pred             CCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHH----HHcCCceEEEcc
Q psy15714        104 IGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMR----RKIKAAEYLECS  178 (205)
Q Consensus       104 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~S  178 (205)
                      ++++.+++.+...|...+.... .+.|+++++||+|+.....             ..+....+.    .... ..++++|
T Consensus        77 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~-------------~~~i~~~~~~~~~~~~~-~~~~~~S  142 (159)
T cd04150          77 SNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMS-------------AAEVTDKLGLHSLRNRN-WYIQATC  142 (159)
T ss_pred             CCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCC-------------HHHHHHHhCccccCCCC-EEEEEee
Confidence            9999999998754555444322 5799999999999965311             111111121    1112 2378999


Q ss_pred             cCCCCCHHHHHHHHHH
Q psy15714        179 AKLNEGLDQVFIAAVR  194 (205)
Q Consensus       179 a~~~~~i~~~~~~i~~  194 (205)
                      |++|+|++++|++|.+
T Consensus       143 ak~g~gv~~~~~~l~~  158 (159)
T cd04150         143 ATSGDGLYEGLDWLSN  158 (159)
T ss_pred             CCCCCCHHHHHHHHhc
Confidence            9999999999999864

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.97  E-value=5.7e-31  Score=186.43  Aligned_cols=156  Identities=14%  Similarity=0.195  Sum_probs=123.9

Q ss_pred             EEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEEECC
Q psy15714         26 VTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIG  105 (205)
Q Consensus        26 i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~  105 (205)
                      |+++|++|+|||||+++|.++.+...+.||.+...   ..+++..+++.+||+||++.++..+..+++++|++++|||++
T Consensus         2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~---~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t   78 (164)
T cd04162           2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS---VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSA   78 (164)
T ss_pred             EEEECCCCCCHHHHHHHHhcCCCcccccccCCcce---EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECC
Confidence            78999999999999999999988888888876542   334555688999999999999999999999999999999999


Q ss_pred             CcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCC----
Q psy15714        106 STSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKL----  181 (205)
Q Consensus       106 ~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~----  181 (205)
                      ++.++..+. .|+..+....+++|+++|+||+|+..........        ...++..++++.+.. ++++||++    
T Consensus        79 ~~~s~~~~~-~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~--------~~~~~~~~~~~~~~~-~~~~Sa~~~~s~  148 (164)
T cd04162          79 DSERLPLAR-QELHQLLQHPPDLPLVVLANKQDLPAARSVQEIH--------KELELEPIARGRRWI-LQGTSLDDDGSP  148 (164)
T ss_pred             CHHHHHHHH-HHHHHHHhCCCCCcEEEEEeCcCCcCCCCHHHHH--------HHhCChhhcCCCceE-EEEeeecCCCCh
Confidence            999998887 6777665544789999999999997654211100        011234555555554 88888888    


Q ss_pred             --CCCHHHHHHHHHH
Q psy15714        182 --NEGLDQVFIAAVR  194 (205)
Q Consensus       182 --~~~i~~~~~~i~~  194 (205)
                        ++|++++|+.++.
T Consensus       149 ~~~~~v~~~~~~~~~  163 (164)
T cd04162         149 SRMEAVKDLLSQLIN  163 (164)
T ss_pred             hHHHHHHHHHHHHhc
Confidence              9999999998864

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.97  E-value=2.3e-29  Score=185.79  Aligned_cols=167  Identities=29%  Similarity=0.508  Sum_probs=140.9

Q ss_pred             cccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccc-eeEEECCEEEEEEEEEcCCCcccccccccCcCCCc
Q psy15714         18 KSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYP-DTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTD   96 (205)
Q Consensus        18 ~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   96 (205)
                      ......+||+++|++|+|||||++++..+.+...+.+|.+..+. ..+..++..+.+.+||++|++.+...+..++..++
T Consensus         4 ~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~   83 (215)
T PTZ00132          4 MDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQ   83 (215)
T ss_pred             ccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCC
Confidence            44566799999999999999999999999998888888877663 44556788899999999999999988888899999


Q ss_pred             EEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEE
Q psy15714         97 CFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLE  176 (205)
Q Consensus        97 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (205)
                      ++++|||++++.++..+. .|+..+.....++|+++++||+|+...             ....+. ..+++..+.. +++
T Consensus        84 ~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~i~lv~nK~Dl~~~-------------~~~~~~-~~~~~~~~~~-~~e  147 (215)
T PTZ00132         84 CAIIMFDVTSRITYKNVP-NWHRDIVRVCENIPIVLVGNKVDVKDR-------------QVKARQ-ITFHRKKNLQ-YYD  147 (215)
T ss_pred             EEEEEEECcCHHHHHHHH-HHHHHHHHhCCCCCEEEEEECccCccc-------------cCCHHH-HHHHHHcCCE-EEE
Confidence            999999999999999987 899888877788999999999998643             222222 3456666665 999


Q ss_pred             cccCCCCCHHHHHHHHHHHHHhhc
Q psy15714        177 CSAKLNEGLDQVFIAAVRSAVKKQ  200 (205)
Q Consensus       177 ~Sa~~~~~i~~~~~~i~~~~~~~~  200 (205)
                      +||++|.|++++|.++.+.+....
T Consensus       148 ~Sa~~~~~v~~~f~~ia~~l~~~p  171 (215)
T PTZ00132        148 ISAKSNYNFEKPFLWLARRLTNDP  171 (215)
T ss_pred             EeCCCCCCHHHHHHHHHHHHhhcc
Confidence            999999999999999999887643

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.97  E-value=1.7e-29  Score=181.95  Aligned_cols=164  Identities=21%  Similarity=0.281  Sum_probs=125.7

Q ss_pred             eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEE-CCEEEEEEEEEcCCCcccccccccCcCCCcEEE
Q psy15714         22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITV-DNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFL   99 (205)
Q Consensus        22 ~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   99 (205)
                      ..+||+++|.+|+|||||++++..+.+... .+|.+... ...+.. ++..+.+.+||+||++.++..+..+++++|+++
T Consensus         2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii   80 (183)
T cd04152           2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIV   80 (183)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEE
Confidence            468999999999999999999999887654 56655433 223333 346688999999999999999999999999999


Q ss_pred             EEEECCCcchHHHHHHHHHHHHhhhC--CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHH--c---CCc
Q psy15714        100 LCFSIGSTSSYENILSKWYPELKHHC--PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRK--I---KAA  172 (205)
Q Consensus       100 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~  172 (205)
                      +|||++++.++..+. .|+..+....  .+.|+++|+||+|+...              ...++...+...  .   ...
T Consensus        81 ~v~D~~~~~~~~~~~-~~~~~i~~~~~~~~~p~iiv~NK~D~~~~--------------~~~~~~~~~~~~~~~~~~~~~  145 (183)
T cd04152          81 FVVDSVDVERMEEAK-TELHKITRFSENQGVPVLVLANKQDLPNA--------------LSVSEVEKLLALHELSASTPW  145 (183)
T ss_pred             EEEECCCHHHHHHHH-HHHHHHHhhhhcCCCcEEEEEECcCcccc--------------CCHHHHHHHhCccccCCCCce
Confidence            999999998888876 6766665433  57999999999998642              223333333221  1   113


Q ss_pred             eEEEcccCCCCCHHHHHHHHHHHHHhhcc
Q psy15714        173 EYLECSAKLNEGLDQVFIAAVRSAVKKQD  201 (205)
Q Consensus       173 ~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~  201 (205)
                      +++++||+++.|++++|++|.+.+.+.++
T Consensus       146 ~~~~~SA~~~~gi~~l~~~l~~~l~~~~~  174 (183)
T cd04152         146 HVQPACAIIGEGLQEGLEKLYEMILKRRK  174 (183)
T ss_pred             EEEEeecccCCCHHHHHHHHHHHHHHHHh
Confidence            47899999999999999999998876543

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd04154 Arl2 Arl2 subfamily

Probab=99.97  E-value=7.5e-29  Score=177.13  Aligned_cols=155  Identities=19%  Similarity=0.265  Sum_probs=118.8

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEE
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLL  100 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~  100 (205)
                      ...+||+++|++|+|||||++++.+..+ ..+.+|.+.. ...+.+++  +.+.+||+||++.++..+..+++.+|++++
T Consensus        12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g~~-~~~~~~~~--~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   87 (173)
T cd04154          12 EREMRILILGLDNAGKTTILKKLLGEDI-DTISPTLGFQ-IKTLEYEG--YKLNIWDVGGQKTLRPYWRNYFESTDALIW   87 (173)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccCCC-CCcCCccccc-eEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence            4568999999999999999999998755 3455665532 23444554  789999999999998888889999999999


Q ss_pred             EEECCCcchHHHHHHHHHHHHhhh--CCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHH----cCCceE
Q psy15714        101 CFSIGSTSSYENILSKWYPELKHH--CPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRK----IKAAEY  174 (205)
Q Consensus       101 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~  174 (205)
                      |||++++.++.+.. .|+..+...  ..+.|+++|+||+|+...              ...++...+.+.    ....++
T Consensus        88 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~~~~  152 (173)
T cd04154          88 VVDSSDRLRLDDCK-RELKELLQEERLAGATLLILANKQDLPGA--------------LSEEEIREALELDKISSHHWRI  152 (173)
T ss_pred             EEECCCHHHHHHHH-HHHHHHHhChhhcCCCEEEEEECcccccC--------------CCHHHHHHHhCccccCCCceEE
Confidence            99999999998886 555554332  268999999999998653              223334443322    123359


Q ss_pred             EEcccCCCCCHHHHHHHHHH
Q psy15714        175 LECSAKLNEGLDQVFIAAVR  194 (205)
Q Consensus       175 ~~~Sa~~~~~i~~~~~~i~~  194 (205)
                      +++||++|.|++++|+++++
T Consensus       153 ~~~Sa~~g~gi~~l~~~l~~  172 (173)
T cd04154         153 QPCSAVTGEGLLQGIDWLVD  172 (173)
T ss_pred             EeccCCCCcCHHHHHHHHhc
Confidence            99999999999999999864

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.96  E-value=1.1e-28  Score=176.38  Aligned_cols=164  Identities=23%  Similarity=0.355  Sum_probs=125.9

Q ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEE
Q psy15714         20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFL   99 (205)
Q Consensus        20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   99 (205)
                      ..+.+||+++|+.|||||||++++..+.+.. +.||.+... ..+.+++  +.+.+||++|+..++..|+.++++++++|
T Consensus        11 ~~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~pT~g~~~-~~i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~iI   86 (175)
T PF00025_consen   11 KKKEIKILILGLDGSGKTTLLNRLKNGEISE-TIPTIGFNI-EEIKYKG--YSLTIWDLGGQESFRPLWKSYFQNADGII   86 (175)
T ss_dssp             TTSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEEESSEEE-EEEEETT--EEEEEEEESSSGGGGGGGGGGHTTESEEE
T ss_pred             cCcEEEEEEECCCccchHHHHHHhhhccccc-cCccccccc-ceeeeCc--EEEEEEeccccccccccceeeccccceeE
Confidence            3678999999999999999999999876543 566655443 3455666  67899999999999999999999999999


Q ss_pred             EEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcc
Q psy15714        100 LCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECS  178 (205)
Q Consensus       100 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  178 (205)
                      ||+|.++.+.+.+...++...+.... .++|++|++||+|+.......+.........        +.... -..++.||
T Consensus        87 fVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~--------l~~~~-~~~v~~~s  157 (175)
T PF00025_consen   87 FVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEK--------LKNKR-PWSVFSCS  157 (175)
T ss_dssp             EEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGG--------TTSSS-CEEEEEEB
T ss_pred             EEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhh--------cccCC-ceEEEeee
Confidence            99999999999998866666666543 6899999999999876432222111111111        11122 23388999


Q ss_pred             cCCCCCHHHHHHHHHHHH
Q psy15714        179 AKLNEGLDQVFIAAVRSA  196 (205)
Q Consensus       179 a~~~~~i~~~~~~i~~~~  196 (205)
                      |.+|+|+.+.|+||.+++
T Consensus       158 a~~g~Gv~e~l~WL~~~~  175 (175)
T PF00025_consen  158 AKTGEGVDEGLEWLIEQI  175 (175)
T ss_dssp             TTTTBTHHHHHHHHHHHH
T ss_pred             ccCCcCHHHHHHHHHhcC
Confidence            999999999999999875

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.96  E-value=5e-29  Score=177.02  Aligned_cols=157  Identities=20%  Similarity=0.280  Sum_probs=119.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEEEC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSI  104 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~  104 (205)
                      +|+++|++|+|||||++++.+. +...+.+|.+.. ...+..+  .+.+++||+||++.++..+..+++++|++|+|||+
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~-~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~   76 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFT-PTKLRLD--KYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDS   76 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCC-CCccccCcccce-EEEEEEC--CEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEEC
Confidence            4899999999999999999976 666677777654 2344444  47899999999999999999999999999999999


Q ss_pred             CCcchHHHHHHHHHHHHhhhC--CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCC-ceEEEcccCC
Q psy15714        105 GSTSSYENILSKWYPELKHHC--PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKA-AEYLECSAKL  181 (205)
Q Consensus       105 ~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~  181 (205)
                      +++.++.++. .|+..+....  .++|+++|+||+|+.......+.....        ....+++..+. .++++|||++
T Consensus        77 s~~~s~~~~~-~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~--------~l~~~~~~~~~~~~~~~~Sa~~  147 (167)
T cd04161          77 SDDDRVQEVK-EILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYL--------SLEKLVNENKSLCHIEPCSAIE  147 (167)
T ss_pred             CchhHHHHHH-HHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhc--------CcccccCCCCceEEEEEeEcee
Confidence            9999999987 6666665432  589999999999997754322211111        11223333332 3478899999


Q ss_pred             C------CCHHHHHHHHHH
Q psy15714        182 N------EGLDQVFIAAVR  194 (205)
Q Consensus       182 ~------~~i~~~~~~i~~  194 (205)
                      |      .|+++.|+||..
T Consensus       148 g~~~~~~~g~~~~~~wl~~  166 (167)
T cd04161         148 GLGKKIDPSIVEGLRWLLA  166 (167)
T ss_pred             CCCCccccCHHHHHHHHhc
Confidence            8      899999999974

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.96  E-value=3.4e-28  Score=176.69  Aligned_cols=150  Identities=23%  Similarity=0.311  Sum_probs=121.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEEC-----CEEEEEEEEEcCCCcccccccccCcCCCcE
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVD-----NKTYDVTLWDTAGQEDYERLRPMSYPNTDC   97 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~-----~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   97 (205)
                      +||+++|++|+|||||++++.++.+...+.+|++..+ .+.+.++     +..+.+.|||++|++.|+.++..+++++|+
T Consensus         1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~   80 (202)
T cd04102           1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG   80 (202)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence            5899999999999999999999999888888887655 3344443     578999999999999999999999999999


Q ss_pred             EEEEEECCCcchHHHHHHHHHHHHhhh--------------------CCCCCEEEEeeCcccccCchhhhhhhhhccccc
Q psy15714         98 FLLCFSIGSTSSYENILSKWYPELKHH--------------------CPKVPIILVGTKADLRSENKTIDKKKAAEVDLV  157 (205)
Q Consensus        98 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--------------------~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~  157 (205)
                      +|+|||++++.|++++. .|+..+...                    ..++|++|||||.|+...+....        ..
T Consensus        81 iIlVyDvtn~~Sf~~l~-~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~--------~~  151 (202)
T cd04102          81 IILVHDLTNRKSSQNLQ-RWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSG--------NL  151 (202)
T ss_pred             EEEEEECcChHHHHHHH-HHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccch--------HH
Confidence            99999999999999997 899888653                    14799999999999976541111        11


Q ss_pred             cHHHHHHHHHHcCCceEEEcccCCCC
Q psy15714        158 STSQGKKMRRKIKAAEYLECSAKLNE  183 (205)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~Sa~~~~  183 (205)
                      .......++++.++. .++.++....
T Consensus       152 ~~~~~~~ia~~~~~~-~i~~~c~~~~  176 (202)
T cd04102         152 VLTARGFVAEQGNAE-EINLNCTNGR  176 (202)
T ss_pred             HhhHhhhHHHhcCCc-eEEEecCCcc
Confidence            222356678888888 7777877544

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.96  E-value=4.9e-28  Score=173.05  Aligned_cols=154  Identities=23%  Similarity=0.302  Sum_probs=118.1

Q ss_pred             eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEE
Q psy15714         22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLC  101 (205)
Q Consensus        22 ~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v  101 (205)
                      +.+||+++|++|+|||||++++..+.+.. +.++.+..+. .+.++  .+.+.+||+||++.+...+..+++.+|++++|
T Consensus        14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~-~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V   89 (174)
T cd04153          14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVE-EIVYK--NIRFLMWDIGGQESLRSSWNTYYTNTDAVILV   89 (174)
T ss_pred             CccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceE-EEEEC--CeEEEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence            46899999999999999999999988765 4666665542 33344  47899999999999998888899999999999


Q ss_pred             EECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHH-HHHH----HHcCCceEE
Q psy15714        102 FSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQG-KKMR----RKIKAAEYL  175 (205)
Q Consensus       102 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~  175 (205)
                      +|+++++++......|...+.... .++|+++++||+|+...              .+.++. +.+.    +..+. +++
T Consensus        90 ~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~--------------~~~~~i~~~l~~~~~~~~~~-~~~  154 (174)
T cd04153          90 IDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGA--------------MTPAEISESLGLTSIRDHTW-HIQ  154 (174)
T ss_pred             EECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCC--------------CCHHHHHHHhCcccccCCce-EEE
Confidence            999999998887755555544332 57999999999998652              122221 1111    22223 489


Q ss_pred             EcccCCCCCHHHHHHHHHH
Q psy15714        176 ECSAKLNEGLDQVFIAAVR  194 (205)
Q Consensus       176 ~~Sa~~~~~i~~~~~~i~~  194 (205)
                      ++||++|+|++++|++|.+
T Consensus       155 ~~SA~~g~gi~e~~~~l~~  173 (174)
T cd04153         155 GCCALTGEGLPEGLDWIAS  173 (174)
T ss_pred             ecccCCCCCHHHHHHHHhc
Confidence            9999999999999999864

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd04157 Arl6 Arl6 subfamily

Probab=99.96  E-value=1.5e-28  Score=173.50  Aligned_cols=152  Identities=22%  Similarity=0.226  Sum_probs=114.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCC-CCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEEE
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENKF-PTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFS  103 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d  103 (205)
                      +|+++|++|+|||||++++.++.+ ...+.+|.+.... .+.  ...+.+.+||+||++.++..+..+++.+|++++|+|
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~-~~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D   77 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVE-SFE--KGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVID   77 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceE-EEE--ECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEe
Confidence            589999999999999999998763 5566677654332 222  335789999999999999999999999999999999


Q ss_pred             CCCcchHHHHHHHHHHHHhhh---C-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHH---HH-HcCCceEE
Q psy15714        104 IGSTSSYENILSKWYPELKHH---C-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKM---RR-KIKAAEYL  175 (205)
Q Consensus       104 ~~~~~s~~~~~~~~~~~~~~~---~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~  175 (205)
                      ++++.++..+. .|+..+...   . .++|+++|+||+|+.....              .++....   .. .....+++
T Consensus        78 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~--------------~~~~~~~l~~~~~~~~~~~~~  142 (162)
T cd04157          78 SSDRLRLVVVK-DELELLLNHPDIKHRRVPILFFANKMDLPDALT--------------AVKITQLLGLENIKDKPWHIF  142 (162)
T ss_pred             CCcHHHHHHHH-HHHHHHHcCcccccCCCCEEEEEeCccccCCCC--------------HHHHHHHhCCccccCceEEEE
Confidence            99999888876 566655432   1 4799999999999875321              1111111   11 01112489


Q ss_pred             EcccCCCCCHHHHHHHHHH
Q psy15714        176 ECSAKLNEGLDQVFIAAVR  194 (205)
Q Consensus       176 ~~Sa~~~~~i~~~~~~i~~  194 (205)
                      ++||++|.|++++|++|.+
T Consensus       143 ~~Sa~~g~gv~~~~~~l~~  161 (162)
T cd04157         143 ASNALTGEGLDEGVQWLQA  161 (162)
T ss_pred             EeeCCCCCchHHHHHHHhc
Confidence            9999999999999999865

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd00879 Sar1 Sar1 subfamily

Probab=99.96  E-value=6.1e-28  Score=174.91  Aligned_cols=157  Identities=22%  Similarity=0.344  Sum_probs=120.4

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEE
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLL  100 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~  100 (205)
                      .+..||+++|++|+|||||++++.++.+. .+.+|.+... ..+.+++  ..+.+||+||+..++..+..+++.++++++
T Consensus        17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~~-~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~iil   92 (190)
T cd00879          17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPTS-EELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIVF   92 (190)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcce-EEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence            45789999999999999999999988874 4556654432 3455555  678999999999998888888999999999


Q ss_pred             EEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHc----------
Q psy15714        101 CFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKI----------  169 (205)
Q Consensus       101 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------  169 (205)
                      |+|+++..++......+...+.... .+.|+++++||+|+..              .+..++.+.+.+..          
T Consensus        93 V~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~--------------~~~~~~~~~~~~~~~~~~~~~~~~  158 (190)
T cd00879          93 LVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG--------------AVSEEELRQALGLYGTTTGKGVSL  158 (190)
T ss_pred             EEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC--------------CcCHHHHHHHhCcccccccccccc
Confidence            9999999888887633334333222 5799999999999864              23344444444321          


Q ss_pred             -----CCceEEEcccCCCCCHHHHHHHHHHH
Q psy15714        170 -----KAAEYLECSAKLNEGLDQVFIAAVRS  195 (205)
Q Consensus       170 -----~~~~~~~~Sa~~~~~i~~~~~~i~~~  195 (205)
                           ...++++|||++|+|++++|+++.+.
T Consensus       159 ~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~  189 (190)
T cd00879         159 KVSGIRPIEVFMCSVVKRQGYGEAFRWLSQY  189 (190)
T ss_pred             cccCceeEEEEEeEecCCCChHHHHHHHHhh
Confidence                 12348999999999999999999875

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>KOG4252|consensus

Probab=99.96  E-value=2.9e-30  Score=176.48  Aligned_cols=174  Identities=24%  Similarity=0.441  Sum_probs=160.8

Q ss_pred             cccccccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCc
Q psy15714         14 DVKSKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSY   92 (205)
Q Consensus        14 ~~~~~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~   92 (205)
                      .|........+|++|+|..++||||+|++|+.+-|...+..+++..+ ...+.+++..+.+.+||++|+++|..+...++
T Consensus        11 am~e~d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyy   90 (246)
T KOG4252|consen   11 AMDETDYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYY   90 (246)
T ss_pred             CCCchhhhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHh
Confidence            45566778999999999999999999999999999999999999888 56677777778899999999999999999999


Q ss_pred             CCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCc
Q psy15714         93 PNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAA  172 (205)
Q Consensus        93 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (205)
                      +++.+.++||+.+|+.||+... .|...+......+|.++|-||+|+.++.            +++..+++.+++.+...
T Consensus        91 rgaqa~vLVFSTTDr~SFea~~-~w~~kv~~e~~~IPtV~vqNKIDlveds------------~~~~~evE~lak~l~~R  157 (246)
T KOG4252|consen   91 RGAQASVLVFSTTDRYSFEATL-EWYNKVQKETERIPTVFVQNKIDLVEDS------------QMDKGEVEGLAKKLHKR  157 (246)
T ss_pred             ccccceEEEEecccHHHHHHHH-HHHHHHHHHhccCCeEEeeccchhhHhh------------hcchHHHHHHHHHhhhh
Confidence            9999999999999999999988 8999999988999999999999999887            89999999999999988


Q ss_pred             eEEEcccCCCCCHHHHHHHHHHHHHhhcc
Q psy15714        173 EYLECSAKLNEGLDQVFIAAVRSAVKKQD  201 (205)
Q Consensus       173 ~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~  201 (205)
                       ++.+|++...|+.++|..++..+..+.+
T Consensus       158 -lyRtSvked~NV~~vF~YLaeK~~q~~k  185 (246)
T KOG4252|consen  158 -LYRTSVKEDFNVMHVFAYLAEKLTQQKK  185 (246)
T ss_pred             -hhhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence             9999999999999999999998877544

>PLN00023 GTP-binding protein; Provisional

Probab=99.96  E-value=1.2e-27  Score=181.96  Aligned_cols=151  Identities=21%  Similarity=0.308  Sum_probs=124.5

Q ss_pred             cccccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEEC-------------CEEEEEEEEEcCCC
Q psy15714         16 KSKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVD-------------NKTYDVTLWDTAGQ   81 (205)
Q Consensus        16 ~~~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~-------------~~~~~~~i~D~~g~   81 (205)
                      ....+...+||+++|..|+|||||+++|.++.+...+.+|++..+ .+.+.++             +..+.++|||++|+
T Consensus        14 ~~~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGq   93 (334)
T PLN00023         14 NGGPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGH   93 (334)
T ss_pred             ccCCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCC
Confidence            355677889999999999999999999999999888889987765 3455554             35688999999999


Q ss_pred             cccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhC-------------CCCCEEEEeeCcccccCchhhhh
Q psy15714         82 EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-------------PKVPIILVGTKADLRSENKTIDK  148 (205)
Q Consensus        82 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-------------~~~p~ivv~nK~Dl~~~~~~~~~  148 (205)
                      +.|+.++..++++++++|+|||++++.+++++. .|+..+....             .++|++||+||+||...+...  
T Consensus        94 ErfrsL~~~yyr~AdgiILVyDITdr~SFenL~-kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r--  170 (334)
T PLN00023         94 ERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQ-KWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTR--  170 (334)
T ss_pred             hhhhhhhHHhccCCCEEEEEEeCCCHHHHHHHH-HHHHHHHHhcccccccccccccCCCCcEEEEEECcccccccccc--
Confidence            999999999999999999999999999999997 8999998752             258999999999996542100  


Q ss_pred             hhhhccccccHHHHHHHHHHcCCce
Q psy15714        149 KKAAEVDLVSTSQGKKMRRKIKAAE  173 (205)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~  173 (205)
                          ....+..++++++++..++.+
T Consensus       171 ----~~s~~~~e~a~~~A~~~g~l~  191 (334)
T PLN00023        171 ----GSSGNLVDAARQWVEKQGLLP  191 (334)
T ss_pred             ----ccccccHHHHHHHHHHcCCCc
Confidence                000246789999999988654

>cd04151 Arl1 Arl1 subfamily

Probab=99.96  E-value=7.8e-28  Score=169.41  Aligned_cols=151  Identities=21%  Similarity=0.249  Sum_probs=113.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEEEC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSI  104 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~  104 (205)
                      ||+++|++++|||||++++..+.+.. +.+|.+..+. .+..  ....+++||+||++.++..++.+++.+|++++|+|+
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~   76 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNVE-TVTY--KNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDS   76 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCeE-EEEE--CCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEEC
Confidence            68999999999999999998887753 4555544332 2333  347899999999999999999999999999999999


Q ss_pred             CCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHH-HH----HHHcCCceEEEcc
Q psy15714        105 GSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGK-KM----RRKIKAAEYLECS  178 (205)
Q Consensus       105 ~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~S  178 (205)
                      +++.++......|...+.... .+.|+++|+||+|+....              ...+.. .+    .+..+ .+++++|
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~--------------~~~~i~~~~~~~~~~~~~-~~~~~~S  141 (158)
T cd04151          77 TDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL--------------SEAEISEKLGLSELKDRT-WSIFKTS  141 (158)
T ss_pred             CCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC--------------CHHHHHHHhCccccCCCc-EEEEEee
Confidence            999888776645555554332 579999999999986532              111111 11    11112 2499999


Q ss_pred             cCCCCCHHHHHHHHHH
Q psy15714        179 AKLNEGLDQVFIAAVR  194 (205)
Q Consensus       179 a~~~~~i~~~~~~i~~  194 (205)
                      |++|.|++++|+++.+
T Consensus       142 a~~~~gi~~l~~~l~~  157 (158)
T cd04151         142 AIKGEGLDEGMDWLVN  157 (158)
T ss_pred             ccCCCCHHHHHHHHhc
Confidence            9999999999999875

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.96  E-value=1.4e-27  Score=168.35  Aligned_cols=151  Identities=25%  Similarity=0.337  Sum_probs=113.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEEEC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSI  104 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~  104 (205)
                      ||+++|++|+|||||++++.++.+... .+|.+..+ ..+.. +..+.+.+||+||++.++..+..++..+|++|+|+|+
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~-~~t~~~~~-~~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~   77 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAELVTT-IPTVGFNV-EMLQL-EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDS   77 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCcccc-cCccCcce-EEEEe-CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEEC
Confidence            589999999999999999999987543 55554332 22333 3457899999999999988888889999999999999


Q ss_pred             CCcchHHHHHHHHHHHH-hhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHH------HHHHHcCCceEEE
Q psy15714        105 GSTSSYENILSKWYPEL-KHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGK------KMRRKIKAAEYLE  176 (205)
Q Consensus       105 ~~~~s~~~~~~~~~~~~-~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~  176 (205)
                      +++.++..+. .|+..+ .... .+.|+++|+||+|+....              ..++..      .+....+ .++++
T Consensus        78 ~~~~~~~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--------------~~~~i~~~~~~~~~~~~~~-~~~~~  141 (160)
T cd04156          78 SDEARLDESQ-KELKHILKNEHIKGVPVVLLANKQDLPGAL--------------TAEEITRRFKLKKYCSDRD-WYVQP  141 (160)
T ss_pred             CcHHHHHHHH-HHHHHHHhchhhcCCCEEEEEECcccccCc--------------CHHHHHHHcCCcccCCCCc-EEEEe
Confidence            9999888887 444444 3322 589999999999986421              111111      1111122 24899


Q ss_pred             cccCCCCCHHHHHHHHHH
Q psy15714        177 CSAKLNEGLDQVFIAAVR  194 (205)
Q Consensus       177 ~Sa~~~~~i~~~~~~i~~  194 (205)
                      +||++|+|++++|++|.+
T Consensus       142 ~Sa~~~~gv~~~~~~i~~  159 (160)
T cd04156         142 CSAVTGEGLAEAFRKLAS  159 (160)
T ss_pred             cccccCCChHHHHHHHhc
Confidence            999999999999999864

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.95  E-value=2.7e-27  Score=170.63  Aligned_cols=168  Identities=18%  Similarity=0.246  Sum_probs=117.6

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEE
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLL  100 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~  100 (205)
                      .+.++|+++|.+|+|||||++++.++.+.. +.+|..... ..+.+++  +++.+||+||+..++..+..++.++|++++
T Consensus        15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~   90 (184)
T smart00178       15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHPTS-EELAIGN--IKFTTFDLGGHQQARRLWKDYFPEVNGIVY   90 (184)
T ss_pred             cccCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCccccce-EEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence            556899999999999999999999887643 344443322 2334444  779999999999999999999999999999


Q ss_pred             EEECCCcchHHHHHHHHHHHHhhh-CCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEccc
Q psy15714        101 CFSIGSTSSYENILSKWYPELKHH-CPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSA  179 (205)
Q Consensus       101 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  179 (205)
                      |+|++++.++......+...+... ..+.|+++|+||+|+.......+..+..+........   .....+...+++|||
T Consensus        91 vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~---~~~~~~~~~i~~~Sa  167 (184)
T smart00178       91 LVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSK---GKVGVRPLEVFMCSV  167 (184)
T ss_pred             EEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCcccccc---cccCCceeEEEEeec
Confidence            999999998888774343333322 2589999999999986532221111111110000000   000113444899999


Q ss_pred             CCCCCHHHHHHHHHHH
Q psy15714        180 KLNEGLDQVFIAAVRS  195 (205)
Q Consensus       180 ~~~~~i~~~~~~i~~~  195 (205)
                      ++++|++++++||.+.
T Consensus       168 ~~~~g~~~~~~wl~~~  183 (184)
T smart00178      168 VRRMGYGEGFKWLSQY  183 (184)
T ss_pred             ccCCChHHHHHHHHhh
Confidence            9999999999999764

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.95  E-value=3.5e-27  Score=167.46  Aligned_cols=152  Identities=23%  Similarity=0.277  Sum_probs=112.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCC------CCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEE
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENKF------PTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCF   98 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~~------~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   98 (205)
                      +|+++|++|+|||||++++.....      ...+.+|.+... ..+.+++  ..+.+||+||++.+...+..++..+|++
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~   77 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNI-GTIEVGN--ARLKFWDLGGQESLRSLWDKYYAECHAI   77 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccce-EEEEECC--EEEEEEECCCChhhHHHHHHHhCCCCEE
Confidence            589999999999999999876432      223344443333 2344444  7899999999999998888899999999


Q ss_pred             EEEEECCCcchHHHHHHHHHHHHhhhC--CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHc------C
Q psy15714         99 LLCFSIGSTSSYENILSKWYPELKHHC--PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKI------K  170 (205)
Q Consensus        99 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~  170 (205)
                      ++|+|+++..++.... .|+..+.+..  .++|+++++||+|+...              ...++...+.+..      .
T Consensus        78 v~vvd~~~~~~~~~~~-~~~~~~~~~~~~~~~p~ilv~NK~D~~~~--------------~~~~~~~~~~~~~~~~~~~~  142 (167)
T cd04160          78 IYVIDSTDRERFEESK-SALEKVLRNEALEGVPLLILANKQDLPDA--------------LSVEEIKEVFQDKAEEIGRR  142 (167)
T ss_pred             EEEEECchHHHHHHHH-HHHHHHHhChhhcCCCEEEEEEccccccC--------------CCHHHHHHHhccccccccCC
Confidence            9999999998888876 4555444322  58999999999998653              2223333332221      2


Q ss_pred             CceEEEcccCCCCCHHHHHHHHHH
Q psy15714        171 AAEYLECSAKLNEGLDQVFIAAVR  194 (205)
Q Consensus       171 ~~~~~~~Sa~~~~~i~~~~~~i~~  194 (205)
                      ..+++++||++|+|+++++++|..
T Consensus       143 ~~~~~~~Sa~~g~gv~e~~~~l~~  166 (167)
T cd04160         143 DCLVLPVSALEGTGVREGIEWLVE  166 (167)
T ss_pred             ceEEEEeeCCCCcCHHHHHHHHhc
Confidence            235999999999999999999864

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>KOG0070|consensus

Probab=99.95  E-value=2.5e-27  Score=163.67  Aligned_cols=163  Identities=20%  Similarity=0.219  Sum_probs=134.1

Q ss_pred             ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEE
Q psy15714         19 SVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCF   98 (205)
Q Consensus        19 ~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   98 (205)
                      -..++.+|+++|..+|||||+++++..+++... .||++..++ .+.+.  ++.|++||.+|+++++.+|..++++.+++
T Consensus        13 ~~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE-~v~yk--n~~f~vWDvGGq~k~R~lW~~Y~~~t~~l   88 (181)
T KOG0070|consen   13 FGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVE-TVEYK--NISFTVWDVGGQEKLRPLWKHYFQNTQGL   88 (181)
T ss_pred             cCcceEEEEEEeccCCCceeeeEeeccCCcccC-CCcccccee-EEEEc--ceEEEEEecCCCcccccchhhhccCCcEE
Confidence            457889999999999999999999999987655 888887764 34444  48899999999999999999999999999


Q ss_pred             EEEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHc----CCce
Q psy15714         99 LLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKI----KAAE  173 (205)
Q Consensus        99 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~  173 (205)
                      |||+|.+|++.+.++..++..++.... .++|+++++||.|+...-.              ..+..+...-.    ...+
T Consensus        89 IfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als--------------~~ei~~~L~l~~l~~~~w~  154 (181)
T KOG0070|consen   89 IFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALS--------------AAEITNKLGLHSLRSRNWH  154 (181)
T ss_pred             EEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCC--------------HHHHHhHhhhhccCCCCcE
Confidence            999999999999999988888887665 6899999999999987532              22222211111    3344


Q ss_pred             EEEcccCCCCCHHHHHHHHHHHHHhh
Q psy15714        174 YLECSAKLNEGLDQVFIAAVRSAVKK  199 (205)
Q Consensus       174 ~~~~Sa~~~~~i~~~~~~i~~~~~~~  199 (205)
                      +..|+|.+|+|+.+.++|+.+.+.+.
T Consensus       155 iq~~~a~~G~GL~egl~wl~~~~~~~  180 (181)
T KOG0070|consen  155 IQSTCAISGEGLYEGLDWLSNNLKKR  180 (181)
T ss_pred             EeeccccccccHHHHHHHHHHHHhcc
Confidence            77899999999999999999987653

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.95  E-value=1.3e-26  Score=163.06  Aligned_cols=151  Identities=22%  Similarity=0.279  Sum_probs=114.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEEEC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSI  104 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~  104 (205)
                      ||+++|.+|+|||||++++.++.+ ..+.++.+... ..+.+.  .+.+.+||+||+..+...+..++..+|++++|||+
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~-~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~   76 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNV-ETVEYK--NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDS   76 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcce-EEEEEC--CEEEEEEECCCChhhHHHHHHHhccCCEEEEEEEC
Confidence            689999999999999999999884 34455554433 233344  37899999999999999999999999999999999


Q ss_pred             CCcchHHHHHHHHHHHHhhhC--CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHH----cCCceEEEcc
Q psy15714        105 GSTSSYENILSKWYPELKHHC--PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRK----IKAAEYLECS  178 (205)
Q Consensus       105 ~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~S  178 (205)
                      +++.++.... .|+..+....  .+.|+++|+||+|+....              ..++.......    ....+++++|
T Consensus        77 ~~~~~~~~~~-~~~~~~~~~~~~~~~piiiv~nK~D~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~S  141 (158)
T cd00878          77 SDRERIEEAK-EELHKLLNEEELKGVPLLIFANKQDLPGAL--------------SVSELIEKLGLEKILGRRWHIQPCS  141 (158)
T ss_pred             CCHHHHHHHH-HHHHHHHhCcccCCCcEEEEeeccCCcccc--------------CHHHHHHhhChhhccCCcEEEEEee
Confidence            9999999887 4544443322  589999999999987642              12222222211    1234599999


Q ss_pred             cCCCCCHHHHHHHHHH
Q psy15714        179 AKLNEGLDQVFIAAVR  194 (205)
Q Consensus       179 a~~~~~i~~~~~~i~~  194 (205)
                      |++|.|++++|++|..
T Consensus       142 a~~~~gv~~~~~~l~~  157 (158)
T cd00878         142 AVTGDGLDEGLDWLLQ  157 (158)
T ss_pred             CCCCCCHHHHHHHHhh
Confidence            9999999999999875

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>KOG0073|consensus

Probab=99.95  E-value=1e-26  Score=156.76  Aligned_cols=166  Identities=14%  Similarity=0.204  Sum_probs=130.2

Q ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEE
Q psy15714         20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFL   99 (205)
Q Consensus        20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   99 (205)
                      ..++++|+++|..|+||||++++|.+.. .+...||.+... +...+++  +++++||.+|+...++.|+.||...|++|
T Consensus        13 kerE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~gf~I-ktl~~~~--~~L~iwDvGGq~~lr~~W~nYfestdglI   88 (185)
T KOG0073|consen   13 KEREVRILILGLDNSGKTTIVKKLLGED-TDTISPTLGFQI-KTLEYKG--YTLNIWDVGGQKTLRSYWKNYFESTDGLI   88 (185)
T ss_pred             hhheeEEEEEecCCCCchhHHHHhcCCC-ccccCCccceee-EEEEecc--eEEEEEEcCCcchhHHHHHHhhhccCeEE
Confidence            4569999999999999999999998877 445555554443 3445555  78999999999999999999999999999


Q ss_pred             EEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcc
Q psy15714        100 LCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECS  178 (205)
Q Consensus       100 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  178 (205)
                      +|+|.+|+..+++-..++-..+.... ...|++|++||.|+...-.....        ...-...++++..+.. ++.||
T Consensus        89 wvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i--------~~~~~L~~l~ks~~~~-l~~cs  159 (185)
T KOG0073|consen   89 WVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEI--------SKALDLEELAKSHHWR-LVKCS  159 (185)
T ss_pred             EEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHH--------HHhhCHHHhccccCce-EEEEe
Confidence            99999999998887766655554332 57999999999999854321110        0111245566667777 99999


Q ss_pred             cCCCCCHHHHHHHHHHHHHh
Q psy15714        179 AKLNEGLDQVFIAAVRSAVK  198 (205)
Q Consensus       179 a~~~~~i~~~~~~i~~~~~~  198 (205)
                      |.+|+++.+-++|+...+..
T Consensus       160 ~~tge~l~~gidWL~~~l~~  179 (185)
T KOG0073|consen  160 AVTGEDLLEGIDWLCDDLMS  179 (185)
T ss_pred             ccccccHHHHHHHHHHHHHH
Confidence            99999999999999998876

>PTZ00099 rab6; Provisional

Probab=99.95  E-value=2.5e-26  Score=164.02  Aligned_cols=139  Identities=26%  Similarity=0.451  Sum_probs=122.5

Q ss_pred             CCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhh
Q psy15714         46 NKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHH  124 (205)
Q Consensus        46 ~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~  124 (205)
                      +.|.+.+.+|++..+ .+.+.+++..+++.|||++|+++++.++..+++++|++|+|||++++.+|+.+. .|+..+...
T Consensus         3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~-~w~~~i~~~   81 (176)
T PTZ00099          3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTT-KWIQDILNE   81 (176)
T ss_pred             CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHH-HHHHHHHHh
Confidence            467788899998766 566788999999999999999999999999999999999999999999999987 798887665


Q ss_pred             C-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCCCCCHHHHHHHHHHHHHh
Q psy15714        125 C-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVK  198 (205)
Q Consensus       125 ~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  198 (205)
                      . +++|+++|+||+|+...+            .++.+++..+++.++.. ++++||++|+|++++|++|++.+.+
T Consensus        82 ~~~~~piilVgNK~DL~~~~------------~v~~~e~~~~~~~~~~~-~~e~SAk~g~nV~~lf~~l~~~l~~  143 (176)
T PTZ00099         82 RGKDVIIALVGNKTDLGDLR------------KVTYEEGMQKAQEYNTM-FHETSAKAGHNIKVLFKKIAAKLPN  143 (176)
T ss_pred             cCCCCeEEEEEECccccccc------------CCCHHHHHHHHHHcCCE-EEEEECCCCCCHHHHHHHHHHHHHh
Confidence            4 689999999999997543            67788888888888776 9999999999999999999998865

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.94  E-value=7.4e-26  Score=158.82  Aligned_cols=156  Identities=20%  Similarity=0.266  Sum_probs=116.0

Q ss_pred             EEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEEECC
Q psy15714         26 VTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIG  105 (205)
Q Consensus        26 i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~  105 (205)
                      |+++|++|+|||||++++.+.++...+.++.+..+. .+..++  +.+.+||+||+..++..+..++..+|++++|+|++
T Consensus         2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~   78 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMR-KVTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAA   78 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceE-EEEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECC
Confidence            799999999999999999999998888888766553 233444  78999999999999998889999999999999999


Q ss_pred             CcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCCCCC
Q psy15714        106 STSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEG  184 (205)
Q Consensus       106 ~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  184 (205)
                      +..++......|...+.... .++|+++|+||+|+..........         ............ .+++++||+++.|
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~---------~~~~~~~~~~~~-~~~~~~Sa~~~~g  148 (159)
T cd04159          79 DRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELI---------EQMNLKSITDRE-VSCYSISCKEKTN  148 (159)
T ss_pred             CHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHH---------HHhCcccccCCc-eEEEEEEeccCCC
Confidence            99888877633333333222 589999999999986542110000         000000011112 3489999999999


Q ss_pred             HHHHHHHHHH
Q psy15714        185 LDQVFIAAVR  194 (205)
Q Consensus       185 i~~~~~~i~~  194 (205)
                      ++++|+++.+
T Consensus       149 i~~l~~~l~~  158 (159)
T cd04159         149 IDIVLDWLIK  158 (159)
T ss_pred             hHHHHHHHhh
Confidence            9999999875

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.94  E-value=3.4e-25  Score=163.95  Aligned_cols=176  Identities=31%  Similarity=0.483  Sum_probs=138.7

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccc-eeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEE
Q psy15714         23 ALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYP-DTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLC  101 (205)
Q Consensus        23 ~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v  101 (205)
                      .+||+++|++|+|||||+++|.++.+...+.++.+..+. ......+..+++.+||++|+++|+.++..++.++++++++
T Consensus         5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~   84 (219)
T COG1100           5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIV   84 (219)
T ss_pred             eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence            389999999999999999999999999999999877774 3444455588999999999999999999999999999999


Q ss_pred             EECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHH---cCCceEEEc
Q psy15714        102 FSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRK---IKAAEYLEC  177 (205)
Q Consensus       102 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~  177 (205)
                      ||..+..++.++...|...+.... .+.|+++++||+|+...............+.............   .... ++++
T Consensus        85 ~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  163 (219)
T COG1100          85 YDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPA-LLET  163 (219)
T ss_pred             EecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccc-eeEe
Confidence            999998888888889999998887 4799999999999987754322111110012222222222222   2344 8999


Q ss_pred             ccC--CCCCHHHHHHHHHHHHHhh
Q psy15714        178 SAK--LNEGLDQVFIAAVRSAVKK  199 (205)
Q Consensus       178 Sa~--~~~~i~~~~~~i~~~~~~~  199 (205)
                      |++  .+.+++++|..+.+.+...
T Consensus       164 s~~~~~~~~v~~~~~~~~~~~~~~  187 (219)
T COG1100         164 SAKSLTGPNVNELFKELLRKLLEE  187 (219)
T ss_pred             ecccCCCcCHHHHHHHHHHHHHHh
Confidence            999  9999999999999988653

>cd04155 Arl3 Arl3 subfamily

Probab=99.94  E-value=2.2e-25  Score=159.08  Aligned_cols=153  Identities=21%  Similarity=0.346  Sum_probs=114.3

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEE
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLL  100 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~  100 (205)
                      ...+||+++|++|+|||||++++.+..+.. +.++.+... ..+..++  ..+.+||+||+..+...+..+++.+|++++
T Consensus        12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~~-~~~t~g~~~-~~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~   87 (173)
T cd04155          12 SEEPRILILGLDNAGKTTILKQLASEDISH-ITPTQGFNI-KTVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDCLIY   87 (173)
T ss_pred             CCccEEEEEccCCCCHHHHHHHHhcCCCcc-cCCCCCcce-EEEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCEEEE
Confidence            447999999999999999999999886643 345544322 2444555  678999999999888888888999999999


Q ss_pred             EEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCC-------c
Q psy15714        101 CFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKA-------A  172 (205)
Q Consensus       101 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~  172 (205)
                      |+|+++..++......|...+.... .++|+++++||+|+.....              .+   .+.+..+.       .
T Consensus        88 v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--------------~~---~i~~~l~~~~~~~~~~  150 (173)
T cd04155          88 VIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAP--------------AE---EIAEALNLHDLRDRTW  150 (173)
T ss_pred             EEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCC--------------HH---HHHHHcCCcccCCCeE
Confidence            9999998888887644444444322 5799999999999865321              11   11122221       2


Q ss_pred             eEEEcccCCCCCHHHHHHHHHH
Q psy15714        173 EYLECSAKLNEGLDQVFIAAVR  194 (205)
Q Consensus       173 ~~~~~Sa~~~~~i~~~~~~i~~  194 (205)
                      +++++||++|+|++++|+||.+
T Consensus       151 ~~~~~Sa~~~~gi~~~~~~l~~  172 (173)
T cd04155         151 HIQACSAKTGEGLQEGMNWVCK  172 (173)
T ss_pred             EEEEeECCCCCCHHHHHHHHhc
Confidence            4789999999999999999975

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.94  E-value=3.3e-25  Score=157.43  Aligned_cols=154  Identities=25%  Similarity=0.196  Sum_probs=104.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCC-CcCccccccceeEEECCEEEEEEEEEcCCCcccccc---------cccCcCC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENKFPTD-YVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERL---------RPMSYPN   94 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~---------~~~~~~~   94 (205)
                      +|+++|.+|+|||||++++.+..+... +..++.......  +.....++.+||+||.......         .......
T Consensus         2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~   79 (168)
T cd01897           2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGH--FDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHL   79 (168)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEE--EccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhc
Confidence            799999999999999999999876422 111111111111  2223478999999997431110         0011123


Q ss_pred             CcEEEEEEECCCcchH--HHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCc
Q psy15714         95 TDCFLLCFSIGSTSSY--ENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAA  172 (205)
Q Consensus        95 ~~~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (205)
                      .|++++|+|++++.++  +... .|+..+.....+.|+++|+||+|+....            .+..  ...+.+... .
T Consensus        80 ~d~~l~v~d~~~~~~~~~~~~~-~~~~~l~~~~~~~pvilv~NK~Dl~~~~------------~~~~--~~~~~~~~~-~  143 (168)
T cd01897          80 RAAVLFLFDPSETCGYSLEEQL-SLFEEIKPLFKNKPVIVVLNKIDLLTFE------------DLSE--IEEEEELEG-E  143 (168)
T ss_pred             cCcEEEEEeCCcccccchHHHH-HHHHHHHhhcCcCCeEEEEEccccCchh------------hHHH--HHHhhhhcc-C
Confidence            6899999999987653  4544 6777776655689999999999997543            1111  334444433 4


Q ss_pred             eEEEcccCCCCCHHHHHHHHHHHH
Q psy15714        173 EYLECSAKLNEGLDQVFIAAVRSA  196 (205)
Q Consensus       173 ~~~~~Sa~~~~~i~~~~~~i~~~~  196 (205)
                      +++++||++|.|++++|+++.+.+
T Consensus       144 ~~~~~Sa~~~~gi~~l~~~l~~~~  167 (168)
T cd01897         144 EVLKISTLTEEGVDEVKNKACELL  167 (168)
T ss_pred             ceEEEEecccCCHHHHHHHHHHHh
Confidence            499999999999999999998875

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>KOG0075|consensus

Probab=99.94  E-value=4.5e-27  Score=155.74  Aligned_cols=164  Identities=18%  Similarity=0.258  Sum_probs=134.6

Q ss_pred             eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEE
Q psy15714         22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLC  101 (205)
Q Consensus        22 ~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v  101 (205)
                      .++++.++|..++|||||++....+.+.+...||.+....   .+....+.+.+||+||+..|++.|+.|++.+++++||
T Consensus        19 ~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmr---k~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~   95 (186)
T KOG0075|consen   19 EEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYV   95 (186)
T ss_pred             heeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeE---EeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEE
Confidence            4678999999999999999999999998888888877753   4455568899999999999999999999999999999


Q ss_pred             EECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccC
Q psy15714        102 FSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAK  180 (205)
Q Consensus       102 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  180 (205)
                      +|+.+++.+....+++.+.+.+.. ..+|++|+|||.|+...-....         +....+..-....... +|.+|++
T Consensus        96 VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~---------li~rmgL~sitdREvc-C~siSck  165 (186)
T KOG0075|consen   96 VDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIA---------LIERMGLSSITDREVC-CFSISCK  165 (186)
T ss_pred             eecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHH---------HHHHhCccccccceEE-EEEEEEc
Confidence            999999999988889999998877 8999999999999987532211         1111112222233445 8999999


Q ss_pred             CCCCHHHHHHHHHHHHHh
Q psy15714        181 LNEGLDQVFIAAVRSAVK  198 (205)
Q Consensus       181 ~~~~i~~~~~~i~~~~~~  198 (205)
                      ...||+-+.+|+++....
T Consensus       166 e~~Nid~~~~Wli~hsk~  183 (186)
T KOG0075|consen  166 EKVNIDITLDWLIEHSKS  183 (186)
T ss_pred             CCccHHHHHHHHHHHhhh
Confidence            999999999999987644

>cd01890 LepA LepA subfamily

Probab=99.94  E-value=2.4e-25  Score=159.75  Aligned_cols=154  Identities=20%  Similarity=0.219  Sum_probs=110.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC-------CCCCCcCcc------cccc-cee--EEE---CCEEEEEEEEEcCCCcccc
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENK-------FPTDYVPTV------FDNY-PDT--ITV---DNKTYDVTLWDTAGQEDYE   85 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~-------~~~~~~~t~------~~~~-~~~--~~~---~~~~~~~~i~D~~g~~~~~   85 (205)
                      +|+++|.+++|||||+++|.+..       +...+.++.      +..+ ...  ..+   ++..+.+.+||+||++++.
T Consensus         2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   81 (179)
T cd01890           2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS   81 (179)
T ss_pred             cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence            68999999999999999998732       222223322      1111 111  222   5667889999999999998


Q ss_pred             cccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHH
Q psy15714         86 RLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKM  165 (205)
Q Consensus        86 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (205)
                      ..+..++..+|++|+|||+++..+..... .|.... .  .++|+++|+||+|+....              .......+
T Consensus        82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~-~~~~~~-~--~~~~iiiv~NK~Dl~~~~--------------~~~~~~~~  143 (179)
T cd01890          82 YEVSRSLAACEGALLLVDATQGVEAQTLA-NFYLAL-E--NNLEIIPVINKIDLPSAD--------------PERVKQQI  143 (179)
T ss_pred             HHHHHHHHhcCeEEEEEECCCCccHhhHH-HHHHHH-H--cCCCEEEEEECCCCCcCC--------------HHHHHHHH
Confidence            88888999999999999999877766654 453322 2  378999999999986432              11222344


Q ss_pred             HHHcCCc--eEEEcccCCCCCHHHHHHHHHHHH
Q psy15714        166 RRKIKAA--EYLECSAKLNEGLDQVFIAAVRSA  196 (205)
Q Consensus       166 ~~~~~~~--~~~~~Sa~~~~~i~~~~~~i~~~~  196 (205)
                      ++.++..  .++++||++|+|++++|+++.+.+
T Consensus       144 ~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~  176 (179)
T cd01890         144 EDVLGLDPSEAILVSAKTGLGVEDLLEAIVERI  176 (179)
T ss_pred             HHHhCCCcccEEEeeccCCCCHHHHHHHHHhhC
Confidence            4544442  489999999999999999998764

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.93  E-value=9.9e-25  Score=152.78  Aligned_cols=157  Identities=38%  Similarity=0.531  Sum_probs=123.4

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEE
Q psy15714         23 ALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLC  101 (205)
Q Consensus        23 ~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v  101 (205)
                      .+||+++|.+|+|||||++++....+...+.++....+ ...+..++..+.+.+||+||+..+...+..++..++.++++
T Consensus         1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~   80 (161)
T TIGR00231         1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV   80 (161)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence            37999999999999999999999987666666665555 33466777778899999999999988888888999999999


Q ss_pred             EECCCc-chHHHHHHHHHHHHhhhCC-CCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEccc
Q psy15714        102 FSIGST-SSYENILSKWYPELKHHCP-KVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSA  179 (205)
Q Consensus       102 ~d~~~~-~s~~~~~~~~~~~~~~~~~-~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  179 (205)
                      +|.... .++......|...+..... +.|+++++||+|+....             . ..+........+..+++++||
T Consensus        81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-------------~-~~~~~~~~~~~~~~~~~~~sa  146 (161)
T TIGR00231        81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK-------------L-KTHVAFLFAKLNGEPIIPLSA  146 (161)
T ss_pred             EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch-------------h-hHHHHHHHhhccCCceEEeec
Confidence            998877 6676665467676666554 89999999999997642             1 223333333444445999999


Q ss_pred             CCCCCHHHHHHHHH
Q psy15714        180 KLNEGLDQVFIAAV  193 (205)
Q Consensus       180 ~~~~~i~~~~~~i~  193 (205)
                      ..+.|++++|++|.
T Consensus       147 ~~~~gv~~~~~~l~  160 (161)
T TIGR00231       147 ETGKNIDSAFKIVE  160 (161)
T ss_pred             CCCCCHHHHHHHhh
Confidence            99999999998863

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.93  E-value=1.1e-25  Score=155.68  Aligned_cols=135  Identities=21%  Similarity=0.182  Sum_probs=101.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCc-----ccccccccCcCCCcEEE
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQE-----DYERLRPMSYPNTDCFL   99 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~-----~~~~~~~~~~~~~~~~i   99 (205)
                      ||+++|++|+|||||++++.+..+.  +.+|..      +.+.     -.+||+||..     .++.+.. .++++|+++
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~------~~~~-----~~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vi   67 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQA------VEYN-----DGAIDTPGEYVENRRLYSALIV-TAADADVIA   67 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCccc--ccccee------EEEc-----CeeecCchhhhhhHHHHHHHHH-HhhcCCEEE
Confidence            8999999999999999999988652  233321      1221     2689999972     3444443 478999999


Q ss_pred             EEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEccc
Q psy15714        100 LCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSA  179 (205)
Q Consensus       100 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  179 (205)
                      +|||++++.++...  .|...+     ..|+++|+||+|+...             ....++++.+++..+..+++++||
T Consensus        68 lv~d~~~~~s~~~~--~~~~~~-----~~p~ilv~NK~Dl~~~-------------~~~~~~~~~~~~~~~~~~~~~~Sa  127 (142)
T TIGR02528        68 LVQSATDPESRFPP--GFASIF-----VKPVIGLVTKIDLAEA-------------DVDIERAKELLETAGAEPIFEISS  127 (142)
T ss_pred             EEecCCCCCcCCCh--hHHHhc-----cCCeEEEEEeeccCCc-------------ccCHHHHHHHHHHcCCCcEEEEec
Confidence            99999999887652  454432     3499999999998642             344566777777777756999999


Q ss_pred             CCCCCHHHHHHHHH
Q psy15714        180 KLNEGLDQVFIAAV  193 (205)
Q Consensus       180 ~~~~~i~~~~~~i~  193 (205)
                      ++|.|++++|+++.
T Consensus       128 ~~~~gi~~l~~~l~  141 (142)
T TIGR02528       128 VDEQGLEALVDYLN  141 (142)
T ss_pred             CCCCCHHHHHHHHh
Confidence            99999999999874

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>KOG0071|consensus

Probab=99.93  E-value=1.1e-25  Score=148.06  Aligned_cols=163  Identities=19%  Similarity=0.228  Sum_probs=129.7

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEE
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLL  100 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~  100 (205)
                      .++++|+.+|..++||||++.++.-+.. ....||.+..+. .+++  ++++|.+||.+|+++.|.+|++++.+..++||
T Consensus        15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~~-~~~ipTvGFnve-tVty--kN~kfNvwdvGGqd~iRplWrhYy~gtqglIF   90 (180)
T KOG0071|consen   15 NKEMRILMLGLDAAGKTTILYKLKLGQS-VTTIPTVGFNVE-TVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF   90 (180)
T ss_pred             cccceEEEEecccCCceehhhHHhcCCC-cccccccceeEE-EEEe--eeeEEeeeeccCchhhhHHHHhhccCCceEEE
Confidence            3589999999999999999999998875 445677666543 4444  44889999999999999999999999999999


Q ss_pred             EEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEccc
Q psy15714        101 CFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSA  179 (205)
Q Consensus       101 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  179 (205)
                      |+|..++...+++.+++...+.... .+.|++|.+||.|++......+.....+        .+. ++..... +..+||
T Consensus        91 V~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~le--------Le~-~r~~~W~-vqp~~a  160 (180)
T KOG0071|consen   91 VVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLE--------LER-IRDRNWY-VQPSCA  160 (180)
T ss_pred             EEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhc--------ccc-ccCCccE-eecccc
Confidence            9999999999999989999887765 7899999999999998654322221111        111 2222333 788999


Q ss_pred             CCCCCHHHHHHHHHHHHH
Q psy15714        180 KLNEGLDQVFIAAVRSAV  197 (205)
Q Consensus       180 ~~~~~i~~~~~~i~~~~~  197 (205)
                      .+|+|+.|-|.|+++.+.
T Consensus       161 ~~gdgL~eglswlsnn~~  178 (180)
T KOG0071|consen  161 LSGDGLKEGLSWLSNNLK  178 (180)
T ss_pred             ccchhHHHHHHHHHhhcc
Confidence            999999999999998754

>cd01898 Obg Obg subfamily

Probab=99.93  E-value=1.4e-24  Score=154.39  Aligned_cols=156  Identities=22%  Similarity=0.177  Sum_probs=106.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCC-CCcCccccccceeEEECCEEEEEEEEEcCCCcc----cccccccC---cCCCc
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENKFPT-DYVPTVFDNYPDTITVDNKTYDVTLWDTAGQED----YERLRPMS---YPNTD   96 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~~---~~~~~   96 (205)
                      +|+++|.+|+|||||++++.+..... ....+........+.+++. ..+.+||+||...    .+.+...+   +..+|
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d   80 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDG-RSFVVADIPGLIEGASEGKGLGHRFLRHIERTR   80 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCC-CeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence            68999999999999999999765421 1111111111112333332 4799999999632    21222222   44699


Q ss_pred             EEEEEEECCCc-chHHHHHHHHHHHHhhhC---CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCc
Q psy15714         97 CFLLCFSIGST-SSYENILSKWYPELKHHC---PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAA  172 (205)
Q Consensus        97 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (205)
                      ++++|+|++++ .+++.+. .|...+....   .+.|+++|+||+|+....            . ..+....+.......
T Consensus        81 ~vi~v~D~~~~~~~~~~~~-~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~------------~-~~~~~~~~~~~~~~~  146 (170)
T cd01898          81 LLLHVIDLSGDDDPVEDYK-TIRNELELYNPELLEKPRIVVLNKIDLLDEE------------E-LFELLKELLKELWGK  146 (170)
T ss_pred             EEEEEEecCCCCCHHHHHH-HHHHHHHHhCccccccccEEEEEchhcCCch------------h-hHHHHHHHHhhCCCC
Confidence            99999999999 7888876 7888877654   479999999999987643            2 223344444443233


Q ss_pred             eEEEcccCCCCCHHHHHHHHHHH
Q psy15714        173 EYLECSAKLNEGLDQVFIAAVRS  195 (205)
Q Consensus       173 ~~~~~Sa~~~~~i~~~~~~i~~~  195 (205)
                      +++++||+++.|++++|+++.+.
T Consensus       147 ~~~~~Sa~~~~gi~~l~~~i~~~  169 (170)
T cd01898         147 PVFPISALTGEGLDELLRKLAEL  169 (170)
T ss_pred             CEEEEecCCCCCHHHHHHHHHhh
Confidence            48999999999999999998864

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>cd04171 SelB SelB subfamily

Probab=99.92  E-value=3.7e-24  Score=151.27  Aligned_cols=156  Identities=17%  Similarity=0.107  Sum_probs=100.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC---CCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEE
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENK---FPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLL  100 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~---~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~  100 (205)
                      .|+++|.+++|||||++++.+..   +...+.++..... .....+.+ ...+.+||+||++++.......+..+|++++
T Consensus         2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~   80 (164)
T cd04171           2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLL   80 (164)
T ss_pred             EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEEE
Confidence            68999999999999999998643   3222222211111 12333331 3579999999999887666667889999999


Q ss_pred             EEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHc--CCceEEEcc
Q psy15714        101 CFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKI--KAAEYLECS  178 (205)
Q Consensus       101 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~S  178 (205)
                      |+|+++....+. . ..+..+... ...|+++++||+|+......          ....++..+..+..  ...+++++|
T Consensus        81 V~d~~~~~~~~~-~-~~~~~~~~~-~~~~~ilv~NK~Dl~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~S  147 (164)
T cd04171          81 VVAADEGIMPQT-R-EHLEILELL-GIKRGLVVLTKADLVDEDWL----------ELVEEEIRELLAGTFLADAPIFPVS  147 (164)
T ss_pred             EEECCCCccHhH-H-HHHHHHHHh-CCCcEEEEEECccccCHHHH----------HHHHHHHHHHHHhcCcCCCcEEEEe
Confidence            999987321111 1 122223222 22499999999999753210          11122333333332  234599999


Q ss_pred             cCCCCCHHHHHHHHHH
Q psy15714        179 AKLNEGLDQVFIAAVR  194 (205)
Q Consensus       179 a~~~~~i~~~~~~i~~  194 (205)
                      |++++|++++|+.+.+
T Consensus       148 a~~~~~v~~l~~~l~~  163 (164)
T cd04171         148 AVTGEGIEELKEYLDE  163 (164)
T ss_pred             CCCCcCHHHHHHHHhh
Confidence            9999999999998754

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.92  E-value=9e-24  Score=164.11  Aligned_cols=165  Identities=22%  Similarity=0.161  Sum_probs=116.9

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCC-CCCcCccccccceeEEECCEEEEEEEEEcCCCcc----cccc---cccCc
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTENKFP-TDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQED----YERL---RPMSY   92 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~---~~~~~   92 (205)
                      +.-..|+++|.|+||||||++++...+.. ..+..|+.......+.+. ....+.+||+||..+    ...+   +-..+
T Consensus       156 k~~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~-~~~~~~i~D~PGli~ga~~~~gLg~~flrhi  234 (335)
T PRK12299        156 KLLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVD-DYKSFVIADIPGLIEGASEGAGLGHRFLKHI  234 (335)
T ss_pred             cccCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeC-CCcEEEEEeCCCccCCCCccccHHHHHHHHh
Confidence            34457899999999999999999976532 333444333333334442 124589999999642    1112   22245


Q ss_pred             CCCcEEEEEEECCCcchHHHHHHHHHHHHhhhC---CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHc
Q psy15714         93 PNTDCFLLCFSIGSTSSYENILSKWYPELKHHC---PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKI  169 (205)
Q Consensus        93 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (205)
                      +.++++++|+|+++.++++++. .|...+..+.   .+.|+++|+||+|+....            .+..++.+.+.+..
T Consensus       235 e~a~vlI~ViD~s~~~s~e~~~-~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~------------~~~~~~~~~~~~~~  301 (335)
T PRK12299        235 ERTRLLLHLVDIEAVDPVEDYK-TIRNELEKYSPELADKPRILVLNKIDLLDEE------------EEREKRAALELAAL  301 (335)
T ss_pred             hhcCEEEEEEcCCCCCCHHHHH-HHHHHHHHhhhhcccCCeEEEEECcccCCch------------hHHHHHHHHHHHhc
Confidence            6799999999999888888876 8988887765   378999999999987543            22233344444445


Q ss_pred             CCceEEEcccCCCCCHHHHHHHHHHHHHhhc
Q psy15714        170 KAAEYLECSAKLNEGLDQVFIAAVRSAVKKQ  200 (205)
Q Consensus       170 ~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~  200 (205)
                      +.. ++++||++++|++++|+++.+.+....
T Consensus       302 ~~~-i~~iSAktg~GI~eL~~~L~~~l~~~~  331 (335)
T PRK12299        302 GGP-VFLISAVTGEGLDELLRALWELLEEAR  331 (335)
T ss_pred             CCC-EEEEEcCCCCCHHHHHHHHHHHHHhhh
Confidence            554 999999999999999999998876543

>cd01878 HflX HflX subfamily

Probab=99.91  E-value=7.4e-24  Score=155.19  Aligned_cols=153  Identities=24%  Similarity=0.230  Sum_probs=107.7

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCC-C-CcCccccccceeEEECCEEEEEEEEEcCCCcc---------cccccc
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTENKFPT-D-YVPTVFDNYPDTITVDNKTYDVTLWDTAGQED---------YERLRP   89 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~-~-~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~---------~~~~~~   89 (205)
                      ...++|+++|++|+|||||++++.+..+.. . +.++. ......+.+++. ..+.+||+||...         +.... 
T Consensus        39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~-~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~-  115 (204)
T cd01878          39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATL-DPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTL-  115 (204)
T ss_pred             cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceec-cceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHH-
Confidence            445899999999999999999999886432 1 22222 222223334442 3799999999732         22111 


Q ss_pred             cCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHH
Q psy15714         90 MSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRK  168 (205)
Q Consensus        90 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (205)
                      ..+..+|++++|+|++++.+..... .|...+.... .+.|+++|+||+|+.....            ..     .....
T Consensus       116 ~~~~~~d~ii~v~D~~~~~~~~~~~-~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~------------~~-----~~~~~  177 (204)
T cd01878         116 EEVAEADLLLHVVDASDPDYEEQIE-TVEKVLKELGAEDIPMILVLNKIDLLDDEE------------LE-----ERLEA  177 (204)
T ss_pred             HHHhcCCeEEEEEECCCCChhhHHH-HHHHHHHHcCcCCCCEEEEEEccccCChHH------------HH-----HHhhc
Confidence            1356899999999999988887765 6777776654 5799999999999866431            11     22333


Q ss_pred             cCCceEEEcccCCCCCHHHHHHHHHHH
Q psy15714        169 IKAAEYLECSAKLNEGLDQVFIAAVRS  195 (205)
Q Consensus       169 ~~~~~~~~~Sa~~~~~i~~~~~~i~~~  195 (205)
                      .. .+++++||+++.|++++|++|.+.
T Consensus       178 ~~-~~~~~~Sa~~~~gi~~l~~~L~~~  203 (204)
T cd01878         178 GR-PDAVFISAKTGEGLDELLEAIEEL  203 (204)
T ss_pred             CC-CceEEEEcCCCCCHHHHHHHHHhh
Confidence            33 349999999999999999998765

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>PRK04213 GTP-binding protein; Provisional

Probab=99.91  E-value=2.7e-24  Score=157.17  Aligned_cols=158  Identities=19%  Similarity=0.151  Sum_probs=104.1

Q ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCC-----------Cccccccc
Q psy15714         20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAG-----------QEDYERLR   88 (205)
Q Consensus        20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g-----------~~~~~~~~   88 (205)
                      +...++|+++|.+|+|||||++++.+..+.....+..... ...+...    .+.+||+||           ++.++..+
T Consensus         6 ~~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~-~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   80 (201)
T PRK04213          6 PDRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRK-PNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEI   80 (201)
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeC-ceEEeec----ceEEEeCCccccccccCHHHHHHHHHHH
Confidence            3456899999999999999999999887654433332211 2222222    589999999           45565554


Q ss_pred             ccCc----CCCcEEEEEEECCCcchHHH---------HHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccc
Q psy15714         89 PMSY----PNTDCFLLCFSIGSTSSYEN---------ILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVD  155 (205)
Q Consensus        89 ~~~~----~~~~~~i~v~d~~~~~s~~~---------~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~  155 (205)
                      ..++    ..++++++|+|.++...+..         ....+...+..  .++|+++|+||+|+....            
T Consensus        81 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~p~iiv~NK~Dl~~~~------------  146 (201)
T PRK04213         81 VRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE--LGIPPIVAVNKMDKIKNR------------  146 (201)
T ss_pred             HHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH--cCCCeEEEEECccccCcH------------
Confidence            4443    45678889998765422210         01123333333  389999999999986532            


Q ss_pred             cccHHHHHHHHHHcCC--------ceEEEcccCCCCCHHHHHHHHHHHHHhhc
Q psy15714        156 LVSTSQGKKMRRKIKA--------AEYLECSAKLNEGLDQVFIAAVRSAVKKQ  200 (205)
Q Consensus       156 ~~~~~~~~~~~~~~~~--------~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~  200 (205)
                         .+...++++.++.        .+++++||++| |++++|++|.+.+....
T Consensus       147 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~~  195 (201)
T PRK04213        147 ---DEVLDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEAK  195 (201)
T ss_pred             ---HHHHHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcCcc
Confidence               2233444444443        13799999999 99999999998865543

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.91  E-value=1.8e-23  Score=148.39  Aligned_cols=158  Identities=22%  Similarity=0.219  Sum_probs=107.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEEC-CEEEEEEEEEcCCCcccccccccCcCCCcEEEEEE
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVD-NKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCF  102 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~  102 (205)
                      .|+++|.+|+|||||++++..+.+...+.++..... ...+..+ +....+.+||+||+..|...+...+..+|++++|+
T Consensus         2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~   81 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV   81 (168)
T ss_pred             EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence            489999999999999999999887654333322222 1223332 13467999999999999888888889999999999


Q ss_pred             ECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHH----Hc-CCceEEEc
Q psy15714        103 SIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRR----KI-KAAEYLEC  177 (205)
Q Consensus       103 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~  177 (205)
                      |+++.......  ..+..+...  ++|+++|+||+|+......          .+ .++...+..    .. ...+++++
T Consensus        82 d~~~~~~~~~~--~~~~~~~~~--~~p~ivv~NK~Dl~~~~~~----------~~-~~~~~~~~~~~~~~~~~~~~~~~~  146 (168)
T cd01887          82 AADDGVMPQTI--EAIKLAKAA--NVPFIVALNKIDKPNANPE----------RV-KNELSELGLQGEDEWGGDVQIVPT  146 (168)
T ss_pred             ECCCCccHHHH--HHHHHHHHc--CCCEEEEEEceecccccHH----------HH-HHHHHHhhccccccccCcCcEEEe
Confidence            99875432222  222334433  7999999999998743210          00 011111110    11 12349999


Q ss_pred             ccCCCCCHHHHHHHHHHHHH
Q psy15714        178 SAKLNEGLDQVFIAAVRSAV  197 (205)
Q Consensus       178 Sa~~~~~i~~~~~~i~~~~~  197 (205)
                      ||++++|++++++++.+...
T Consensus       147 Sa~~~~gi~~l~~~l~~~~~  166 (168)
T cd01887         147 SAKTGEGIDDLLEAILLLAE  166 (168)
T ss_pred             ecccCCCHHHHHHHHHHhhh
Confidence            99999999999999987653

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.91  E-value=5.7e-23  Score=142.60  Aligned_cols=153  Identities=37%  Similarity=0.604  Sum_probs=115.0

Q ss_pred             EECCCCCCHHHHHHHHhcCCC-CCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEEECCC
Q psy15714         28 TVGDGMVGKTCLLITHTENKF-PTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGS  106 (205)
Q Consensus        28 v~G~~~~GKstli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~  106 (205)
                      ++|++|+|||||++++.+... .....++............+....+.+||+||...+.......++.+|++++|+|+++
T Consensus         1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~   80 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTD   80 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcC
Confidence            589999999999999998887 4555555533334555666678899999999998888777788999999999999999


Q ss_pred             cchHHHHHHHH--HHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCCCCC
Q psy15714        107 TSSYENILSKW--YPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEG  184 (205)
Q Consensus       107 ~~s~~~~~~~~--~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  184 (205)
                      +.+..... .|  .........++|+++++||+|+.....            ................+++++|+..+.|
T Consensus        81 ~~~~~~~~-~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~------------~~~~~~~~~~~~~~~~~~~~~s~~~~~~  147 (157)
T cd00882          81 RESFENVK-EWLLLILINKEGENIPIILVGNKIDLPEERV------------VSEEELAEQLAKELGVPYFETSAKTGEN  147 (157)
T ss_pred             HHHHHHHH-HHHHHHHHhhccCCCcEEEEEeccccccccc------------hHHHHHHHHHHhhcCCcEEEEecCCCCC
Confidence            98888876 44  222233337999999999999876531            1111112222333445599999999999


Q ss_pred             HHHHHHHHH
Q psy15714        185 LDQVFIAAV  193 (205)
Q Consensus       185 i~~~~~~i~  193 (205)
                      +++++++|.
T Consensus       148 i~~~~~~l~  156 (157)
T cd00882         148 VEELFEELA  156 (157)
T ss_pred             hHHHHHHHh
Confidence            999999986

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.91  E-value=1.1e-23  Score=141.25  Aligned_cols=114  Identities=30%  Similarity=0.522  Sum_probs=89.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCC--CCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEE
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENKFP--TDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLC  101 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~~~--~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v  101 (205)
                      ||+|+|++|+|||||+++|.+..+.  ....+..+..+ ............+.+||++|++.+...+..++..+|++++|
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv   80 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV   80 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence            7999999999999999999999876  12222223333 23455667777799999999998888777779999999999


Q ss_pred             EECCCcchHHHHHH--HHHHHHhhhCCCCCEEEEeeCcc
Q psy15714        102 FSIGSTSSYENILS--KWYPELKHHCPKVPIILVGTKAD  138 (205)
Q Consensus       102 ~d~~~~~s~~~~~~--~~~~~~~~~~~~~p~ivv~nK~D  138 (205)
                      ||++++.++..+..  .|+..+.....++|+++|+||.|
T Consensus        81 ~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D  119 (119)
T PF08477_consen   81 YDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD  119 (119)
T ss_dssp             EECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred             EcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence            99999999999753  36777777667899999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>cd01894 EngA1 EngA1 subfamily

Probab=99.91  E-value=2.3e-23  Score=146.06  Aligned_cols=146  Identities=21%  Similarity=0.183  Sum_probs=104.0

Q ss_pred             EEECCCCCCHHHHHHHHhcCC--CCCCCcCccccccceeEEECCEEEEEEEEEcCCCccccc--------ccccCcCCCc
Q psy15714         27 TTVGDGMVGKTCLLITHTENK--FPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYER--------LRPMSYPNTD   96 (205)
Q Consensus        27 ~v~G~~~~GKstli~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~~~~~   96 (205)
                      +++|.+|+|||||++++.+..  +.....+++..........++  ..+.+||+||...+..        .....++.+|
T Consensus         1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d   78 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEAD   78 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence            479999999999999999875  233334443333334445555  5799999999887544        2334678899


Q ss_pred             EEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEE
Q psy15714         97 CFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLE  176 (205)
Q Consensus        97 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (205)
                      ++++|+|+.+..+....  .+...+...  +.|+++|+||+|+.....            .     .......+..++++
T Consensus        79 ~ii~v~d~~~~~~~~~~--~~~~~~~~~--~~piiiv~nK~D~~~~~~------------~-----~~~~~~~~~~~~~~  137 (157)
T cd01894          79 VILFVVDGREGLTPADE--EIAKYLRKS--KKPVILVVNKVDNIKEED------------E-----AAEFYSLGFGEPIP  137 (157)
T ss_pred             EEEEEEeccccCCccHH--HHHHHHHhc--CCCEEEEEECcccCChHH------------H-----HHHHHhcCCCCeEE
Confidence            99999999876544442  344444444  699999999999876431            1     22233455545899


Q ss_pred             cccCCCCCHHHHHHHHHHH
Q psy15714        177 CSAKLNEGLDQVFIAAVRS  195 (205)
Q Consensus       177 ~Sa~~~~~i~~~~~~i~~~  195 (205)
                      +|+++++|++++|+++.+.
T Consensus       138 ~Sa~~~~gv~~l~~~l~~~  156 (157)
T cd01894         138 ISAEHGRGIGDLLDAILEL  156 (157)
T ss_pred             EecccCCCHHHHHHHHHhh
Confidence            9999999999999999875

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>TIGR00436 era GTP-binding protein Era

Probab=99.91  E-value=3.6e-23  Score=157.51  Aligned_cols=154  Identities=16%  Similarity=0.103  Sum_probs=108.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCC--CCCcCccccccceeEEECCEEEEEEEEEcCCCcccc-cc-------cccCcCC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENKFP--TDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYE-RL-------RPMSYPN   94 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-~~-------~~~~~~~   94 (205)
                      +|+++|.+|+|||||+|++.+.++.  .....|+..........++  .++.+|||||..... .+       ....+..
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~--~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~   79 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGA--SQIIFIDTPGFHEKKHSLNRLMMKEARSAIGG   79 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCC--cEEEEEECcCCCCCcchHHHHHHHHHHHHHhh
Confidence            6899999999999999999998753  2333444433222222233  468999999975421 11       2345789


Q ss_pred             CcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceE
Q psy15714         95 TDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEY  174 (205)
Q Consensus        95 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (205)
                      +|++++|+|+++..+..   ..++..+...  +.|+++|+||+|+....             ...+....+....+..++
T Consensus        80 aDvvl~VvD~~~~~~~~---~~i~~~l~~~--~~p~ilV~NK~Dl~~~~-------------~~~~~~~~~~~~~~~~~v  141 (270)
T TIGR00436        80 VDLILFVVDSDQWNGDG---EFVLTKLQNL--KRPVVLTRNKLDNKFKD-------------KLLPLIDKYAILEDFKDI  141 (270)
T ss_pred             CCEEEEEEECCCCCchH---HHHHHHHHhc--CCCEEEEEECeeCCCHH-------------HHHHHHHHHHhhcCCCce
Confidence            99999999999876654   2555666554  89999999999986432             112234444444555458


Q ss_pred             EEcccCCCCCHHHHHHHHHHHHHh
Q psy15714        175 LECSAKLNEGLDQVFIAAVRSAVK  198 (205)
Q Consensus       175 ~~~Sa~~~~~i~~~~~~i~~~~~~  198 (205)
                      +++||++|.|++++++++.+.+..
T Consensus       142 ~~iSA~~g~gi~~L~~~l~~~l~~  165 (270)
T TIGR00436       142 VPISALTGDNTSFLAAFIEVHLPE  165 (270)
T ss_pred             EEEecCCCCCHHHHHHHHHHhCCC
Confidence            999999999999999999887644

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.91  E-value=5.2e-23  Score=167.64  Aligned_cols=162  Identities=20%  Similarity=0.182  Sum_probs=114.4

Q ss_pred             eeeEEEEECCCCCCHHHHHHHHhcCCC--CCCCcCccccccceeEEECCEEEEEEEEEcCCCc----------cccccc-
Q psy15714         22 KALKVTTVGDGMVGKTCLLITHTENKF--PTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQE----------DYERLR-   88 (205)
Q Consensus        22 ~~~ki~v~G~~~~GKstli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~----------~~~~~~-   88 (205)
                      ..+||+++|.+++|||||++++++...  ......++.+.....+.+++..  +.+|||||..          .|..+. 
T Consensus       210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~--~~l~DTaG~~~~~~~~~~~e~~~~~~~  287 (472)
T PRK03003        210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKT--WRFVDTAGLRRRVKQASGHEYYASLRT  287 (472)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEE--EEEEECCCccccccccchHHHHHHHHH
Confidence            468999999999999999999998864  3344444444445566677754  6799999952          232222 


Q ss_pred             ccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHH
Q psy15714         89 PMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRK  168 (205)
Q Consensus        89 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (205)
                      ..+++.+|++++|||+++..++.+.  .++..+...  +.|+++|+||+|+......          ....++.......
T Consensus       288 ~~~i~~ad~vilV~Da~~~~s~~~~--~~~~~~~~~--~~piIiV~NK~Dl~~~~~~----------~~~~~~i~~~l~~  353 (472)
T PRK03003        288 HAAIEAAEVAVVLIDASEPISEQDQ--RVLSMVIEA--GRALVLAFNKWDLVDEDRR----------YYLEREIDRELAQ  353 (472)
T ss_pred             HHHHhcCCEEEEEEeCCCCCCHHHH--HHHHHHHHc--CCCEEEEEECcccCChhHH----------HHHHHHHHHhccc
Confidence            2357899999999999999888876  455555544  8999999999999753210          1111222222222


Q ss_pred             cCCceEEEcccCCCCCHHHHHHHHHHHHHhh
Q psy15714        169 IKAAEYLECSAKLNEGLDQVFIAAVRSAVKK  199 (205)
Q Consensus       169 ~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  199 (205)
                      ....+++++||++|.|++++|..+.+.+...
T Consensus       354 ~~~~~~~~~SAk~g~gv~~lf~~i~~~~~~~  384 (472)
T PRK03003        354 VPWAPRVNISAKTGRAVDKLVPALETALESW  384 (472)
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence            3334589999999999999999998876543

>PRK15494 era GTPase Era; Provisional

Probab=99.90  E-value=1.4e-22  Score=158.48  Aligned_cols=158  Identities=22%  Similarity=0.217  Sum_probs=109.5

Q ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCC--CCcCccccccceeEEECCEEEEEEEEEcCCCcc-cccccc-------
Q psy15714         20 VHKALKVTTVGDGMVGKTCLLITHTENKFPT--DYVPTVFDNYPDTITVDNKTYDVTLWDTAGQED-YERLRP-------   89 (205)
Q Consensus        20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~~-------   89 (205)
                      ..+.++|+++|.+|+|||||+++|.+.++..  ....++.......+..++  .++.+|||||... +..+..       
T Consensus        49 ~~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~~  126 (339)
T PRK15494         49 NQKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCAW  126 (339)
T ss_pred             ccceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHHH
Confidence            3567899999999999999999999888742  222222222233455555  4689999999743 222211       


Q ss_pred             cCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHc
Q psy15714         90 MSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKI  169 (205)
Q Consensus        90 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (205)
                      ..+..+|++++|+|..+  ++......|+..+...  +.|.++|+||+|+...             .  ..+...+....
T Consensus       127 ~~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~~--~~p~IlViNKiDl~~~-------------~--~~~~~~~l~~~  187 (339)
T PRK15494        127 SSLHSADLVLLIIDSLK--SFDDITHNILDKLRSL--NIVPIFLLNKIDIESK-------------Y--LNDIKAFLTEN  187 (339)
T ss_pred             HHhhhCCEEEEEEECCC--CCCHHHHHHHHHHHhc--CCCEEEEEEhhcCccc-------------c--HHHHHHHHHhc
Confidence            24679999999999765  4445443566666554  6788899999998542             1  23344444443


Q ss_pred             C-CceEEEcccCCCCCHHHHHHHHHHHHHh
Q psy15714        170 K-AAEYLECSAKLNEGLDQVFIAAVRSAVK  198 (205)
Q Consensus       170 ~-~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  198 (205)
                      . ...++++||++|.|++++|+++.+.+..
T Consensus       188 ~~~~~i~~iSAktg~gv~eL~~~L~~~l~~  217 (339)
T PRK15494        188 HPDSLLFPISALSGKNIDGLLEYITSKAKI  217 (339)
T ss_pred             CCCcEEEEEeccCccCHHHHHHHHHHhCCC
Confidence            3 3458999999999999999999887654

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.90  E-value=1.4e-22  Score=142.38  Aligned_cols=147  Identities=16%  Similarity=0.149  Sum_probs=105.0

Q ss_pred             EECCCCCCHHHHHHHHhcCCCCCCCcC-ccccccceeEEECCEEEEEEEEEcCCCcccccc------cccCc--CCCcEE
Q psy15714         28 TVGDGMVGKTCLLITHTENKFPTDYVP-TVFDNYPDTITVDNKTYDVTLWDTAGQEDYERL------RPMSY--PNTDCF   98 (205)
Q Consensus        28 v~G~~~~GKstli~~~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~------~~~~~--~~~~~~   98 (205)
                      ++|.+|+|||||++++.+..+.....+ +........+.+++  ..+.+||+||+..+...      ...++  +.+|++
T Consensus         1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v   78 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI   78 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence            589999999999999998864332222 22333344566666  46899999998776542      33444  489999


Q ss_pred             EEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcc
Q psy15714         99 LLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECS  178 (205)
Q Consensus        99 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  178 (205)
                      ++|+|+++..+..    .|...+...  ++|+++|+||+|+....            .+. .+...+++.++.. ++++|
T Consensus        79 i~v~d~~~~~~~~----~~~~~~~~~--~~~~iiv~NK~Dl~~~~------------~~~-~~~~~~~~~~~~~-~~~iS  138 (158)
T cd01879          79 VNVVDATNLERNL----YLTLQLLEL--GLPVVVALNMIDEAEKR------------GIK-IDLDKLSELLGVP-VVPTS  138 (158)
T ss_pred             EEEeeCCcchhHH----HHHHHHHHc--CCCEEEEEehhhhcccc------------cch-hhHHHHHHhhCCC-eEEEE
Confidence            9999998765432    344444444  79999999999997643            222 2234566666665 99999


Q ss_pred             cCCCCCHHHHHHHHHHHH
Q psy15714        179 AKLNEGLDQVFIAAVRSA  196 (205)
Q Consensus       179 a~~~~~i~~~~~~i~~~~  196 (205)
                      |.++.|++++|+++.+.+
T Consensus       139 a~~~~~~~~l~~~l~~~~  156 (158)
T cd01879         139 ARKGEGIDELKDAIAELA  156 (158)
T ss_pred             ccCCCCHHHHHHHHHHHh
Confidence            999999999999998764

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.90  E-value=4.3e-23  Score=149.97  Aligned_cols=147  Identities=15%  Similarity=0.037  Sum_probs=101.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhc--CCCCCCCc------------Ccccccc-ceeEEECCEEEEEEEEEcCCCcccccccc
Q psy15714         25 KVTTVGDGMVGKTCLLITHTE--NKFPTDYV------------PTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRP   89 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~--~~~~~~~~------------~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~   89 (205)
                      +|+++|.+++|||||+++|..  +.+...+.            .+.+... .....+......+.+||+||+++|...+.
T Consensus         4 ~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~   83 (194)
T cd01891           4 NIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEVE   83 (194)
T ss_pred             EEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHHH
Confidence            799999999999999999997  55544321            1122222 22333445567899999999999998888


Q ss_pred             cCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHH-
Q psy15714         90 MSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRK-  168 (205)
Q Consensus        90 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  168 (205)
                      .+++.+|++++|||+++.. ..... .|+..+...  ++|+++|+||+|+...+.           ....++...+... 
T Consensus        84 ~~~~~~d~~ilV~d~~~~~-~~~~~-~~~~~~~~~--~~p~iiv~NK~Dl~~~~~-----------~~~~~~~~~~~~~~  148 (194)
T cd01891          84 RVLSMVDGVLLLVDASEGP-MPQTR-FVLKKALEL--GLKPIVVINKIDRPDARP-----------EEVVDEVFDLFIEL  148 (194)
T ss_pred             HHHHhcCEEEEEEECCCCc-cHHHH-HHHHHHHHc--CCCEEEEEECCCCCCCCH-----------HHHHHHHHHHHHHh
Confidence            8999999999999998753 22222 344444333  899999999999975431           1122333333322 


Q ss_pred             ------cCCceEEEcccCCCCCHHH
Q psy15714        169 ------IKAAEYLECSAKLNEGLDQ  187 (205)
Q Consensus       169 ------~~~~~~~~~Sa~~~~~i~~  187 (205)
                            .+. +++++||++|.|+.+
T Consensus       149 ~~~~~~~~~-~iv~~Sa~~g~~~~~  172 (194)
T cd01891         149 GATEEQLDF-PVLYASAKNGWASLN  172 (194)
T ss_pred             CCccccCcc-CEEEeehhccccccc
Confidence                  244 489999999988743

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>KOG3883|consensus

Probab=99.90  E-value=1.9e-22  Score=134.78  Aligned_cols=170  Identities=24%  Similarity=0.294  Sum_probs=140.8

Q ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCC--CCCCcCccccccceeEEE-CCEEEEEEEEEcCCCccc-ccccccCcCCC
Q psy15714         20 VHKALKVTTVGDGMVGKTCLLITHTENKF--PTDYVPTVFDNYPDTITV-DNKTYDVTLWDTAGQEDY-ERLRPMSYPNT   95 (205)
Q Consensus        20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~--~~~~~~t~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~-~~~~~~~~~~~   95 (205)
                      ..+..|++|+|..++|||.+++.+.-+..  ...+.+|+++.|...+.- +|..=.+.++||.|-..+ -.+.+++++-+
T Consensus         6 mGk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~a   85 (198)
T KOG3883|consen    6 MGKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFA   85 (198)
T ss_pred             hCcceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccC
Confidence            35678999999999999999998886654  345677888887554443 344557999999998777 56678899999


Q ss_pred             cEEEEEEECCCcchHHHHHHHHHHHHhhhC--CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCce
Q psy15714         96 DCFLLCFSIGSTSSYENILSKWYPELKHHC--PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAE  173 (205)
Q Consensus        96 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (205)
                      |++++||+..|++||+.+. .+...+.+.-  ..+|++|++||.|+..++            +++.+-++.|++..... 
T Consensus        86 DafVLVYs~~d~eSf~rv~-llKk~Idk~KdKKEvpiVVLaN~rdr~~p~------------~vd~d~A~~Wa~rEkvk-  151 (198)
T KOG3883|consen   86 DAFVLVYSPMDPESFQRVE-LLKKEIDKHKDKKEVPIVVLANKRDRAEPR------------EVDMDVAQIWAKREKVK-  151 (198)
T ss_pred             ceEEEEecCCCHHHHHHHH-HHHHHHhhccccccccEEEEechhhcccch------------hcCHHHHHHHHhhhhee-
Confidence            9999999999999999875 5555565543  579999999999998776            88999999999999888 


Q ss_pred             EEEcccCCCCCHHHHHHHHHHHHHhhcccC
Q psy15714        174 YLECSAKLNEGLDQVFIAAVRSAVKKQDKS  203 (205)
Q Consensus       174 ~~~~Sa~~~~~i~~~~~~i~~~~~~~~~~~  203 (205)
                      +++++|.+.-.+-+-|..+...+...+.++
T Consensus       152 l~eVta~dR~sL~epf~~l~~rl~~pqskS  181 (198)
T KOG3883|consen  152 LWEVTAMDRPSLYEPFTYLASRLHQPQSKS  181 (198)
T ss_pred             EEEEEeccchhhhhHHHHHHHhccCCcccc
Confidence            999999999999999999999887766654

>KOG1673|consensus

Probab=99.90  E-value=1.3e-22  Score=135.94  Aligned_cols=173  Identities=24%  Similarity=0.448  Sum_probs=146.5

Q ss_pred             cccccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCC
Q psy15714         16 KSKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPN   94 (205)
Q Consensus        16 ~~~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~   94 (205)
                      .+.+..-.+||.++|++..|||||+-++.++.+.+.+..+.+..+ .+.+.+.+..+.+.|||++|++++....+..+.+
T Consensus        13 ~a~~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~d   92 (205)
T KOG1673|consen   13 PAVSNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKD   92 (205)
T ss_pred             cccccceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecC
Confidence            345778899999999999999999999999999888888888888 5789999999999999999999999999999999


Q ss_pred             CcEEEEEEECCCcchHHHHHHHHHHHHhhhCC-CCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCce
Q psy15714         95 TDCFLLCFSIGSTSSYENILSKWYPELKHHCP-KVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAE  173 (205)
Q Consensus        95 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (205)
                      +-+++|+||.+.++++..+. +|....+.... .+| ++||+|.|+.-.-+...       +.-...+++.+|+-.++. 
T Consensus        93 svaIlFmFDLt~r~TLnSi~-~WY~QAr~~NktAiP-ilvGTKyD~fi~lp~e~-------Q~~I~~qar~YAk~mnAs-  162 (205)
T KOG1673|consen   93 SVAILFMFDLTRRSTLNSIK-EWYRQARGLNKTAIP-ILVGTKYDLFIDLPPEL-------QETISRQARKYAKVMNAS-  162 (205)
T ss_pred             cEEEEEEEecCchHHHHHHH-HHHHHHhccCCccce-EEeccchHhhhcCCHHH-------HHHHHHHHHHHHHHhCCc-
Confidence            99999999999999999988 89999888763 444 57899999753321100       022344678889999988 


Q ss_pred             EEEcccCCCCCHHHHHHHHHHHHHh
Q psy15714        174 YLECSAKLNEGLDQVFIAAVRSAVK  198 (205)
Q Consensus       174 ~~~~Sa~~~~~i~~~~~~i~~~~~~  198 (205)
                      ++.||+....|++++|.-+...+.+
T Consensus       163 L~F~Sts~sINv~KIFK~vlAklFn  187 (205)
T KOG1673|consen  163 LFFCSTSHSINVQKIFKIVLAKLFN  187 (205)
T ss_pred             EEEeeccccccHHHHHHHHHHHHhC
Confidence            9999999999999999998887654

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.90  E-value=1.6e-22  Score=156.99  Aligned_cols=161  Identities=23%  Similarity=0.211  Sum_probs=112.5

Q ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCC-CCCcCccccccceeEEECCEEEEEEEEEcCCCccc----cccccc---C
Q psy15714         20 VHKALKVTTVGDGMVGKTCLLITHTENKFP-TDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY----ERLRPM---S   91 (205)
Q Consensus        20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~----~~~~~~---~   91 (205)
                      -+....|+++|.|+||||||++++...+.. ..+..|+.......+.+++ ...+.+||+||....    ..+...   .
T Consensus       154 lk~~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrh  232 (329)
T TIGR02729       154 LKLLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKH  232 (329)
T ss_pred             eeccccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHH
Confidence            344567999999999999999999986532 2333333222222334433 356899999997431    122222   3


Q ss_pred             cCCCcEEEEEEECCCc---chHHHHHHHHHHHHhhhC---CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHH
Q psy15714         92 YPNTDCFLLCFSIGST---SSYENILSKWYPELKHHC---PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKM  165 (205)
Q Consensus        92 ~~~~~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (205)
                      ++.++++++|+|+++.   .+++.+. .|...+..+.   .+.|++||+||+|+....             ...+..+.+
T Consensus       233 ierad~ll~VvD~s~~~~~~~~e~l~-~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~-------------~~~~~~~~l  298 (329)
T TIGR02729       233 IERTRVLLHLIDISPLDGRDPIEDYE-IIRNELKKYSPELAEKPRIVVLNKIDLLDEE-------------ELAELLKEL  298 (329)
T ss_pred             HHhhCEEEEEEcCccccccCHHHHHH-HHHHHHHHhhhhhccCCEEEEEeCccCCChH-------------HHHHHHHHH
Confidence            4579999999999976   5667765 7777776654   479999999999987542             112344555


Q ss_pred             HHHcCCceEEEcccCCCCCHHHHHHHHHHHH
Q psy15714        166 RRKIKAAEYLECSAKLNEGLDQVFIAAVRSA  196 (205)
Q Consensus       166 ~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~  196 (205)
                      ++..+.. ++++||++++|++++++++.+.+
T Consensus       299 ~~~~~~~-vi~iSAktg~GI~eL~~~I~~~l  328 (329)
T TIGR02729       299 KKALGKP-VFPISALTGEGLDELLYALAELL  328 (329)
T ss_pred             HHHcCCc-EEEEEccCCcCHHHHHHHHHHHh
Confidence            5555654 99999999999999999998754

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>KOG0072|consensus

Probab=99.90  E-value=8.4e-24  Score=139.78  Aligned_cols=165  Identities=19%  Similarity=0.232  Sum_probs=127.1

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEE
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLL  100 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~  100 (205)
                      .++.+|+++|.-|+||||++.++.-++... ..|+++.... .+.+  ++.++++||++|+-..+..|++++.+.|++||
T Consensus        16 e~e~rililgldGaGkttIlyrlqvgevvt-tkPtigfnve-~v~y--KNLk~~vwdLggqtSirPyWRcYy~dt~avIy   91 (182)
T KOG0072|consen   16 EREMRILILGLDGAGKTTILYRLQVGEVVT-TKPTIGFNVE-TVPY--KNLKFQVWDLGGQTSIRPYWRCYYADTDAVIY   91 (182)
T ss_pred             ccceEEEEeeccCCCeeEEEEEcccCcccc-cCCCCCcCcc-cccc--ccccceeeEccCcccccHHHHHHhcccceEEE
Confidence            378999999999999999998887776533 3566655543 2333  56889999999999999999999999999999


Q ss_pred             EEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEccc
Q psy15714        101 CFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSA  179 (205)
Q Consensus       101 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  179 (205)
                      |+|.+|+..+.-...++..++.+.. .+.-++|++||.|........+...+++        ..++  +.....++++||
T Consensus        92 VVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~--------l~~L--k~r~~~Iv~tSA  161 (182)
T KOG0072|consen   92 VVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLG--------LQKL--KDRIWQIVKTSA  161 (182)
T ss_pred             EEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhC--------hHHH--hhheeEEEeecc
Confidence            9999999877777667888886655 6788999999999877543322222221        1111  122355999999


Q ss_pred             CCCCCHHHHHHHHHHHHHhh
Q psy15714        180 KLNEGLDQVFIAAVRSAVKK  199 (205)
Q Consensus       180 ~~~~~i~~~~~~i~~~~~~~  199 (205)
                      .+|+|+++.++|+.+.+..+
T Consensus       162 ~kg~Gld~~~DWL~~~l~~~  181 (182)
T KOG0072|consen  162 VKGEGLDPAMDWLQRPLKSR  181 (182)
T ss_pred             ccccCCcHHHHHHHHHHhcc
Confidence            99999999999999987654

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.90  E-value=1.2e-22  Score=146.65  Aligned_cols=158  Identities=19%  Similarity=0.094  Sum_probs=109.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCcCccc--------------ccc-ceeEEECCEEEEEEEEEcCCCcccccccc
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVF--------------DNY-PDTITVDNKTYDVTLWDTAGQEDYERLRP   89 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~--------------~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~   89 (205)
                      +|+|+|.+|+|||||++++.+............              ... ............+.+||+||...+...+.
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~   80 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI   80 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence            489999999999999999998876543322110              000 00111222246799999999998888888


Q ss_pred             cCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHc
Q psy15714         90 MSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKI  169 (205)
Q Consensus        90 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (205)
                      .++..+|++++|+|+.+..+....  .++..+..  .+.|+++++||+|+......          ....++.++..+..
T Consensus        81 ~~~~~~d~~i~v~d~~~~~~~~~~--~~~~~~~~--~~~~i~iv~nK~D~~~~~~~----------~~~~~~~~~~~~~~  146 (189)
T cd00881          81 RGLSVSDGAILVVDANEGVQPQTR--EHLRIARE--GGLPIIVAINKIDRVGEEDL----------EEVLREIKELLGLI  146 (189)
T ss_pred             HHHHhcCEEEEEEECCCCCcHHHH--HHHHHHHH--CCCCeEEEEECCCCcchhcH----------HHHHHHHHHHHccc
Confidence            888999999999999887654432  44455544  48999999999999763211          11122233333322


Q ss_pred             -------------CCceEEEcccCCCCCHHHHHHHHHHHH
Q psy15714        170 -------------KAAEYLECSAKLNEGLDQVFIAAVRSA  196 (205)
Q Consensus       170 -------------~~~~~~~~Sa~~~~~i~~~~~~i~~~~  196 (205)
                                   ...+++++||++|.|++++|.++.+.+
T Consensus       147 ~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l  186 (189)
T cd00881         147 GFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHL  186 (189)
T ss_pred             cccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence                         235599999999999999999998876

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.89  E-value=4.6e-22  Score=160.96  Aligned_cols=164  Identities=18%  Similarity=0.158  Sum_probs=113.2

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCC--CCCCcCccccccceeEEECCEEEEEEEEEcCCCccccccc----------
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTENKF--PTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLR----------   88 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~----------   88 (205)
                      ...++|+++|.+++|||||++++++...  ......++.+.....+..++.  .+.+|||||..++....          
T Consensus       170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~e~~~~~~  247 (429)
T TIGR03594       170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGK--KYLLIDTAGIRRKGKVTEGVEKYSVLR  247 (429)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCc--EEEEEECCCccccccchhhHHHHHHHH
Confidence            4568999999999999999999998653  334444444444445555664  68899999975543321          


Q ss_pred             -ccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHH
Q psy15714         89 -PMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRR  167 (205)
Q Consensus        89 -~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (205)
                       ...++.+|++++|+|++++.+..+.  .++..+...  +.|+++|+||+|+.......         .....+......
T Consensus       248 ~~~~~~~ad~~ilV~D~~~~~~~~~~--~~~~~~~~~--~~~iiiv~NK~Dl~~~~~~~---------~~~~~~~~~~~~  314 (429)
T TIGR03594       248 TLKAIERADVVLLVLDATEGITEQDL--RIAGLILEA--GKALVIVVNKWDLVKDEKTR---------EEFKKELRRKLP  314 (429)
T ss_pred             HHHHHHhCCEEEEEEECCCCccHHHH--HHHHHHHHc--CCcEEEEEECcccCCCHHHH---------HHHHHHHHHhcc
Confidence             2357889999999999988777665  455555544  79999999999997221000         001111222222


Q ss_pred             HcCCceEEEcccCCCCCHHHHHHHHHHHHHhh
Q psy15714        168 KIKAAEYLECSAKLNEGLDQVFIAAVRSAVKK  199 (205)
Q Consensus       168 ~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  199 (205)
                      ..+..+++++||++|.|++++|+++.+.+...
T Consensus       315 ~~~~~~vi~~SA~~g~~v~~l~~~i~~~~~~~  346 (429)
T TIGR03594       315 FLDFAPIVFISALTGQGVDKLLDAIDEVYENA  346 (429)
T ss_pred             cCCCCceEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence            23445699999999999999999998876543

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.89  E-value=2.1e-22  Score=143.86  Aligned_cols=152  Identities=24%  Similarity=0.213  Sum_probs=102.5

Q ss_pred             EECCCCCCHHHHHHHHhcCCC-CCCCcCccccccceeEEEC-CEEEEEEEEEcCCCcc----ccccc---ccCcCCCcEE
Q psy15714         28 TVGDGMVGKTCLLITHTENKF-PTDYVPTVFDNYPDTITVD-NKTYDVTLWDTAGQED----YERLR---PMSYPNTDCF   98 (205)
Q Consensus        28 v~G~~~~GKstli~~~~~~~~-~~~~~~t~~~~~~~~~~~~-~~~~~~~i~D~~g~~~----~~~~~---~~~~~~~~~~   98 (205)
                      ++|++|+|||||++++.+..+ ...+..++.......+.++ +  ..+.+||+||...    .+.+.   ...+..+|++
T Consensus         1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~i   78 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDG--ARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAI   78 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCC--CeEEEEeccccchhhhcCCCccHHHHHHHhccCEE
Confidence            589999999999999998864 2233333322222334444 4  5689999999733    22222   2246789999


Q ss_pred             EEEEECCCc------chHHHHHHHHHHHHhhhC--------CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHH
Q psy15714         99 LLCFSIGST------SSYENILSKWYPELKHHC--------PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKK  164 (205)
Q Consensus        99 i~v~d~~~~------~s~~~~~~~~~~~~~~~~--------~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  164 (205)
                      ++|+|+++.      .++.+.. .|...+....        .+.|+++|+||+|+....            .........
T Consensus        79 i~v~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~------------~~~~~~~~~  145 (176)
T cd01881          79 LHVVDASEDDDIGGVDPLEDYE-ILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAE------------ELEEELVRE  145 (176)
T ss_pred             EEEEeccCCccccccCHHHHHH-HHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchh------------HHHHHHHHH
Confidence            999999988      4666665 5655555432        379999999999997653            111111223


Q ss_pred             HHHHcCCceEEEcccCCCCCHHHHHHHHHHH
Q psy15714        165 MRRKIKAAEYLECSAKLNEGLDQVFIAAVRS  195 (205)
Q Consensus       165 ~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  195 (205)
                      .....+.. ++++||+++.|++++++++...
T Consensus       146 ~~~~~~~~-~~~~Sa~~~~gl~~l~~~l~~~  175 (176)
T cd01881         146 LALEEGAE-VVPISAKTEEGLDELIRAIYEL  175 (176)
T ss_pred             HhcCCCCC-EEEEehhhhcCHHHHHHHHHhh
Confidence            33333444 9999999999999999998754

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.89  E-value=3.3e-22  Score=160.73  Aligned_cols=152  Identities=19%  Similarity=0.182  Sum_probs=112.8

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCC--CCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccc--------ccc
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTENK--FPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERL--------RPM   90 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~   90 (205)
                      ...+||+++|++|+|||||++++.+..  +...+.+++.+.....+.+++  ..+.+|||||...+...        ...
T Consensus       201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~~  278 (442)
T TIGR00450       201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSFK  278 (442)
T ss_pred             hcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHHH
Confidence            455899999999999999999999875  344555555554455667777  45789999998654332        234


Q ss_pred             CcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcC
Q psy15714         91 SYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIK  170 (205)
Q Consensus        91 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (205)
                      +++.+|++++|||++++.+++..   |+..+..  .++|+++|+||+|+...                  +...+++..+
T Consensus       279 ~~~~aD~il~V~D~s~~~s~~~~---~l~~~~~--~~~piIlV~NK~Dl~~~------------------~~~~~~~~~~  335 (442)
T TIGR00450       279 AIKQADLVIYVLDASQPLTKDDF---LIIDLNK--SKKPFILVLNKIDLKIN------------------SLEFFVSSKV  335 (442)
T ss_pred             HHhhCCEEEEEEECCCCCChhHH---HHHHHhh--CCCCEEEEEECccCCCc------------------chhhhhhhcC
Confidence            67899999999999998877653   6555543  37899999999998542                  1122344445


Q ss_pred             CceEEEcccCCCCCHHHHHHHHHHHHHhh
Q psy15714        171 AAEYLECSAKLNEGLDQVFIAAVRSAVKK  199 (205)
Q Consensus       171 ~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  199 (205)
                      .. ++++||++ .|++++|+.+.+.+...
T Consensus       336 ~~-~~~vSak~-~gI~~~~~~L~~~i~~~  362 (442)
T TIGR00450       336 LN-SSNLSAKQ-LKIKALVDLLTQKINAF  362 (442)
T ss_pred             Cc-eEEEEEec-CCHHHHHHHHHHHHHHH
Confidence            55 89999998 69999999998887653

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.89  E-value=2.1e-22  Score=157.66  Aligned_cols=152  Identities=23%  Similarity=0.225  Sum_probs=108.0

Q ss_pred             eeeEEEEECCCCCCHHHHHHHHhcCCCC-CCCcCccccccceeEEECCEEEEEEEEEcCCCc---------ccccccccC
Q psy15714         22 KALKVTTVGDGMVGKTCLLITHTENKFP-TDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQE---------DYERLRPMS   91 (205)
Q Consensus        22 ~~~ki~v~G~~~~GKstli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~---------~~~~~~~~~   91 (205)
                      ..++|+++|.+++|||||+|++.+..+. .....++.+.....+.+.+. ..+.+|||+|..         .|+..+. .
T Consensus       188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~-~~i~l~DT~G~~~~l~~~lie~f~~tle-~  265 (351)
T TIGR03156       188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG-GEVLLTDTVGFIRDLPHELVAAFRATLE-E  265 (351)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC-ceEEEEecCcccccCCHHHHHHHHHHHH-H
Confidence            3489999999999999999999987643 23333333334455556322 478999999972         2333222 4


Q ss_pred             cCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcC
Q psy15714         92 YPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIK  170 (205)
Q Consensus        92 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (205)
                      +.++|++++|+|++++.+..... .|...+.... .+.|+++|+||+|+....            .+     .....  .
T Consensus       266 ~~~ADlil~VvD~s~~~~~~~~~-~~~~~L~~l~~~~~piIlV~NK~Dl~~~~------------~v-----~~~~~--~  325 (351)
T TIGR03156       266 VREADLLLHVVDASDPDREEQIE-AVEKVLEELGAEDIPQLLVYNKIDLLDEP------------RI-----ERLEE--G  325 (351)
T ss_pred             HHhCCEEEEEEECCCCchHHHHH-HHHHHHHHhccCCCCEEEEEEeecCCChH------------hH-----HHHHh--C
Confidence            77899999999999998877764 5666666554 479999999999986432            11     11111  1


Q ss_pred             CceEEEcccCCCCCHHHHHHHHHHH
Q psy15714        171 AAEYLECSAKLNEGLDQVFIAAVRS  195 (205)
Q Consensus       171 ~~~~~~~Sa~~~~~i~~~~~~i~~~  195 (205)
                      ..+++++||++|.|+++++++|.+.
T Consensus       326 ~~~~i~iSAktg~GI~eL~~~I~~~  350 (351)
T TIGR03156       326 YPEAVFVSAKTGEGLDLLLEAIAER  350 (351)
T ss_pred             CCCEEEEEccCCCCHHHHHHHHHhh
Confidence            2348999999999999999998764

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>cd04163 Era Era subfamily

Probab=99.89  E-value=3.1e-22  Score=141.44  Aligned_cols=158  Identities=21%  Similarity=0.129  Sum_probs=105.1

Q ss_pred             eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCccccc--------ccccCcC
Q psy15714         22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYER--------LRPMSYP   93 (205)
Q Consensus        22 ~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~~   93 (205)
                      ...+|+++|++|+|||||++++.+..+........................+.+||+||......        .....+.
T Consensus         2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   81 (168)
T cd04163           2 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK   81 (168)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence            35789999999999999999999876532211111111111122233346789999999654322        1233578


Q ss_pred             CCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCce
Q psy15714         94 NTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAE  173 (205)
Q Consensus        94 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (205)
                      .+|++++|+|++++.+  .....+...+...  +.|+++|+||+|+....            ....+....+....+..+
T Consensus        82 ~~d~i~~v~d~~~~~~--~~~~~~~~~~~~~--~~~~iiv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~~  145 (168)
T cd04163          82 DVDLVLFVVDASEPIG--EGDEFILELLKKS--KTPVILVLNKIDLVKDK------------EDLLPLLEKLKELGPFAE  145 (168)
T ss_pred             hCCEEEEEEECCCccC--chHHHHHHHHHHh--CCCEEEEEEchhccccH------------HHHHHHHHHHHhccCCCc
Confidence            8999999999998722  2222444555444  79999999999997432            222333444444454556


Q ss_pred             EEEcccCCCCCHHHHHHHHHHH
Q psy15714        174 YLECSAKLNEGLDQVFIAAVRS  195 (205)
Q Consensus       174 ~~~~Sa~~~~~i~~~~~~i~~~  195 (205)
                      ++++|++++.|+++++++|.+.
T Consensus       146 ~~~~s~~~~~~~~~l~~~l~~~  167 (168)
T cd04163         146 IFPISALKGENVDELLEEIVKY  167 (168)
T ss_pred             eEEEEeccCCChHHHHHHHHhh
Confidence            9999999999999999999764

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.89  E-value=3.2e-22  Score=163.06  Aligned_cols=154  Identities=18%  Similarity=0.145  Sum_probs=108.9

Q ss_pred             eeeEEEEECCCCCCHHHHHHHHhcCCCC--CCCcCccccccceeEEECCEEEEEEEEEcCCCcc--------cccccccC
Q psy15714         22 KALKVTTVGDGMVGKTCLLITHTENKFP--TDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQED--------YERLRPMS   91 (205)
Q Consensus        22 ~~~ki~v~G~~~~GKstli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~   91 (205)
                      ...+|+++|.+|+|||||++++.+....  .....++.+.....+..++  ..+.+||+||.+.        +......+
T Consensus        37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~  114 (472)
T PRK03003         37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNG--RRFTVVDTGGWEPDAKGLQASVAEQAEVA  114 (472)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECC--cEEEEEeCCCcCCcchhHHHHHHHHHHHH
Confidence            3479999999999999999999987642  2222222222233445556  3588999999763        23334456


Q ss_pred             cCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCC
Q psy15714         92 YPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKA  171 (205)
Q Consensus        92 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (205)
                      ++.+|++++|||+++..+....  .|...+...  +.|+++|+||+|+....               .+....+  ..+.
T Consensus       115 ~~~aD~il~VvD~~~~~s~~~~--~i~~~l~~~--~~piilV~NK~Dl~~~~---------------~~~~~~~--~~g~  173 (472)
T PRK03003        115 MRTADAVLFVVDATVGATATDE--AVARVLRRS--GKPVILAANKVDDERGE---------------ADAAALW--SLGL  173 (472)
T ss_pred             HHhCCEEEEEEECCCCCCHHHH--HHHHHHHHc--CCCEEEEEECccCCccc---------------hhhHHHH--hcCC
Confidence            8899999999999998766542  566666654  89999999999986421               1112222  2333


Q ss_pred             ceEEEcccCCCCCHHHHHHHHHHHHHh
Q psy15714        172 AEYLECSAKLNEGLDQVFIAAVRSAVK  198 (205)
Q Consensus       172 ~~~~~~Sa~~~~~i~~~~~~i~~~~~~  198 (205)
                      ...+++||++|.|++++|+++++.+.+
T Consensus       174 ~~~~~iSA~~g~gi~eL~~~i~~~l~~  200 (472)
T PRK03003        174 GEPHPVSALHGRGVGDLLDAVLAALPE  200 (472)
T ss_pred             CCeEEEEcCCCCCcHHHHHHHHhhccc
Confidence            335799999999999999999988755

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.89  E-value=3e-22  Score=146.29  Aligned_cols=120  Identities=17%  Similarity=0.212  Sum_probs=91.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCC-cEEEEEEE
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNT-DCFLLCFS  103 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~-~~~i~v~d  103 (205)
                      +|+++|++|+|||+|+++|..+.+...+.++............+....+.+||+||+.+++..+..+++.+ +++|||+|
T Consensus         2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD   81 (203)
T cd04105           2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVD   81 (203)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEE
Confidence            68999999999999999999998866655442222111111123456799999999999988888888888 99999999


Q ss_pred             CCCc-chHHHHHHHHHHHHhhh---CCCCCEEEEeeCcccccCch
Q psy15714        104 IGST-SSYENILSKWYPELKHH---CPKVPIILVGTKADLRSENK  144 (205)
Q Consensus       104 ~~~~-~s~~~~~~~~~~~~~~~---~~~~p~ivv~nK~Dl~~~~~  144 (205)
                      +++. .++..+...|...+...   .+++|+++++||+|+....+
T Consensus        82 ~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~  126 (203)
T cd04105          82 SATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKP  126 (203)
T ss_pred             CccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCC
Confidence            9998 67777765555554432   26899999999999876544

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.89  E-value=1.2e-21  Score=137.27  Aligned_cols=145  Identities=27%  Similarity=0.279  Sum_probs=103.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCC--CCCcCccccccceeEEECCEEEEEEEEEcCCCcccccc--------cccCcC
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTENKFP--TDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERL--------RPMSYP   93 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~~   93 (205)
                      ++|+++|++|+|||||++++.+....  .....+...........++  ..+.+||+||...+...        ....+.
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~   79 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG--IPVRLIDTAGIRETEDEIEKIGIERAREAIE   79 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC--EEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence            58999999999999999999987642  2223332222223344444  56899999997654321        123567


Q ss_pred             CCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCce
Q psy15714         94 NTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAE  173 (205)
Q Consensus        94 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (205)
                      .+|++++|+|++++.+..... .|..     ..+.|+++|+||+|+....            ..       ..... ..+
T Consensus        80 ~~~~~v~v~d~~~~~~~~~~~-~~~~-----~~~~~vi~v~nK~D~~~~~------------~~-------~~~~~-~~~  133 (157)
T cd04164          80 EADLVLFVIDASRGLDEEDLE-ILEL-----PADKPIIVVLNKSDLLPDS------------EL-------LSLLA-GKP  133 (157)
T ss_pred             hCCEEEEEEECCCCCCHHHHH-HHHh-----hcCCCEEEEEEchhcCCcc------------cc-------ccccC-CCc
Confidence            899999999999887776654 2322     3489999999999987643            11       22223 344


Q ss_pred             EEEcccCCCCCHHHHHHHHHHHH
Q psy15714        174 YLECSAKLNEGLDQVFIAAVRSA  196 (205)
Q Consensus       174 ~~~~Sa~~~~~i~~~~~~i~~~~  196 (205)
                      ++++||+++.|+++++++|.+.+
T Consensus       134 ~~~~Sa~~~~~v~~l~~~l~~~~  156 (157)
T cd04164         134 IIAISAKTGEGLDELKEALLELA  156 (157)
T ss_pred             eEEEECCCCCCHHHHHHHHHHhh
Confidence            99999999999999999988754

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.88  E-value=1.5e-21  Score=161.43  Aligned_cols=160  Identities=21%  Similarity=0.235  Sum_probs=109.9

Q ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEE
Q psy15714         20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCF   98 (205)
Q Consensus        20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   98 (205)
                      ..+..+|+++|+.++|||||++++.+..+.....+.+.... ...+..++. ..+.+||||||+.|..++...+..+|++
T Consensus        84 ~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDia  162 (587)
T TIGR00487        84 VERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIV  162 (587)
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEE
Confidence            45778999999999999999999998877654433222222 223344332 2789999999999999888889999999


Q ss_pred             EEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHH---HHHHcC-CceE
Q psy15714         99 LLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKK---MRRKIK-AAEY  174 (205)
Q Consensus        99 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~  174 (205)
                      ++|+|+++....+..  +.+......  ++|+++++||+|+......          .+ .++...   ....++ ..++
T Consensus       163 ILVVda~dgv~~qT~--e~i~~~~~~--~vPiIVviNKiDl~~~~~e----------~v-~~~L~~~g~~~~~~~~~~~~  227 (587)
T TIGR00487       163 VLVVAADDGVMPQTI--EAISHAKAA--NVPIIVAINKIDKPEANPD----------RV-KQELSEYGLVPEDWGGDTIF  227 (587)
T ss_pred             EEEEECCCCCCHhHH--HHHHHHHHc--CCCEEEEEECcccccCCHH----------HH-HHHHHHhhhhHHhcCCCceE
Confidence            999999875433332  222333333  8999999999998643210          00 011110   112222 2358


Q ss_pred             EEcccCCCCCHHHHHHHHHHH
Q psy15714        175 LECSAKLNEGLDQVFIAAVRS  195 (205)
Q Consensus       175 ~~~Sa~~~~~i~~~~~~i~~~  195 (205)
                      +++||++|+|++++|+++...
T Consensus       228 v~iSAktGeGI~eLl~~I~~~  248 (587)
T TIGR00487       228 VPVSALTGDGIDELLDMILLQ  248 (587)
T ss_pred             EEEECCCCCChHHHHHhhhhh
Confidence            999999999999999998653

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.88  E-value=5e-22  Score=160.51  Aligned_cols=148  Identities=27%  Similarity=0.255  Sum_probs=110.2

Q ss_pred             eeeEEEEECCCCCCHHHHHHHHhcCCC--CCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccc--------cccC
Q psy15714         22 KALKVTTVGDGMVGKTCLLITHTENKF--PTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERL--------RPMS   91 (205)
Q Consensus        22 ~~~ki~v~G~~~~GKstli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~   91 (205)
                      ..++|+++|.+++|||||++++.+...  ......++.+.....+.+++  ..+.+|||||...+...        ....
T Consensus       214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~  291 (449)
T PRK05291        214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREA  291 (449)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence            458999999999999999999998763  34445555444455666666  46899999998654332        1236


Q ss_pred             cCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCC
Q psy15714         92 YPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKA  171 (205)
Q Consensus        92 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (205)
                      +..+|++++|+|++++.+++... .|..     ..+.|+++|+||+|+....            ...        ...+ 
T Consensus       292 ~~~aD~il~VvD~s~~~s~~~~~-~l~~-----~~~~piiiV~NK~DL~~~~------------~~~--------~~~~-  344 (449)
T PRK05291        292 IEEADLVLLVLDASEPLTEEDDE-ILEE-----LKDKPVIVVLNKADLTGEI------------DLE--------EENG-  344 (449)
T ss_pred             HHhCCEEEEEecCCCCCChhHHH-HHHh-----cCCCCcEEEEEhhhccccc------------hhh--------hccC-
Confidence            78899999999999988777543 3433     4479999999999996542            111        1222 


Q ss_pred             ceEEEcccCCCCCHHHHHHHHHHHHHh
Q psy15714        172 AEYLECSAKLNEGLDQVFIAAVRSAVK  198 (205)
Q Consensus       172 ~~~~~~Sa~~~~~i~~~~~~i~~~~~~  198 (205)
                      .+++++||++|.|++++++++.+.+..
T Consensus       345 ~~~i~iSAktg~GI~~L~~~L~~~l~~  371 (449)
T PRK05291        345 KPVIRISAKTGEGIDELREAIKELAFG  371 (449)
T ss_pred             CceEEEEeeCCCCHHHHHHHHHHHHhh
Confidence            348999999999999999999988753

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.88  E-value=8.6e-22  Score=143.31  Aligned_cols=166  Identities=17%  Similarity=0.125  Sum_probs=107.8

Q ss_pred             ccccccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCc----------cc
Q psy15714         15 VKSKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQE----------DY   84 (205)
Q Consensus        15 ~~~~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~----------~~   84 (205)
                      +.........+|+++|.+|+|||||++++.+..+...+.++.+........  ....++.|||+||..          .+
T Consensus        16 ~~~~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~--~~~~~l~l~DtpG~~~~~~~~~~~~~~   93 (196)
T PRK00454         16 LEQLPPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFF--EVNDKLRLVDLPGYGYAKVSKEEKEKW   93 (196)
T ss_pred             HhhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEE--ecCCeEEEeCCCCCCCcCCCchHHHHH
Confidence            334445577899999999999999999999987555555554433221111  112679999999942          23


Q ss_pred             ccccccCcC---CCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHH
Q psy15714         85 ERLRPMSYP---NTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQ  161 (205)
Q Consensus        85 ~~~~~~~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~  161 (205)
                      ......++.   ..+++++++|.+++.+....  .+...+...  +.|+++++||+|+.+....          +...++
T Consensus        94 ~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~--~i~~~l~~~--~~~~iiv~nK~Dl~~~~~~----------~~~~~~  159 (196)
T PRK00454         94 QKLIEEYLRTRENLKGVVLLIDSRHPLKELDL--QMIEWLKEY--GIPVLIVLTKADKLKKGER----------KKQLKK  159 (196)
T ss_pred             HHHHHHHHHhCccceEEEEEEecCCCCCHHHH--HHHHHHHHc--CCcEEEEEECcccCCHHHH----------HHHHHH
Confidence            333333333   44688889998876544332  233334333  7999999999998754311          112223


Q ss_pred             HHHHHHHcCCceEEEcccCCCCCHHHHHHHHHHHHH
Q psy15714        162 GKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV  197 (205)
Q Consensus       162 ~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~  197 (205)
                      .......... +++++||+++.|++++|+.+.+.+.
T Consensus       160 i~~~l~~~~~-~~~~~Sa~~~~gi~~l~~~i~~~~~  194 (196)
T PRK00454        160 VRKALKFGDD-EVILFSSLKKQGIDELRAAIAKWLA  194 (196)
T ss_pred             HHHHHHhcCC-ceEEEEcCCCCCHHHHHHHHHHHhc
Confidence            3334333334 4899999999999999999987664

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.88  E-value=3.2e-22  Score=138.29  Aligned_cols=147  Identities=19%  Similarity=0.257  Sum_probs=101.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCC-CCCcCccccccceeEEECCEEEEEEEEEcCCCcccc------cccccC--cCC
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTENKFP-TDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYE------RLRPMS--YPN   94 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~--~~~   94 (205)
                      ++|+++|.|++|||||+|++++.+.. .+++.++.......+.+++  ..+.++|+||-....      .....+  ...
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~   78 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK   78 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence            58999999999999999999998743 2334443333344566667  568888999943322      122223  368


Q ss_pred             CcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceE
Q psy15714         95 TDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEY  174 (205)
Q Consensus        95 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (205)
                      .|++++|.|+++.+   .-. ++...+.+.  ++|+++++||+|+....            .+ ......+++.++.+ +
T Consensus        79 ~D~ii~VvDa~~l~---r~l-~l~~ql~e~--g~P~vvvlN~~D~a~~~------------g~-~id~~~Ls~~Lg~p-v  138 (156)
T PF02421_consen   79 PDLIIVVVDATNLE---RNL-YLTLQLLEL--GIPVVVVLNKMDEAERK------------GI-EIDAEKLSERLGVP-V  138 (156)
T ss_dssp             SSEEEEEEEGGGHH---HHH-HHHHHHHHT--TSSEEEEEETHHHHHHT------------TE-EE-HHHHHHHHTS--E
T ss_pred             CCEEEEECCCCCHH---HHH-HHHHHHHHc--CCCEEEEEeCHHHHHHc------------CC-EECHHHHHHHhCCC-E
Confidence            99999999998643   322 455566666  89999999999987653            22 22466677778887 9


Q ss_pred             EEcccCCCCCHHHHHHHH
Q psy15714        175 LECSAKLNEGLDQVFIAA  192 (205)
Q Consensus       175 ~~~Sa~~~~~i~~~~~~i  192 (205)
                      +.+||++++|++++++.|
T Consensus       139 i~~sa~~~~g~~~L~~~I  156 (156)
T PF02421_consen  139 IPVSARTGEGIDELKDAI  156 (156)
T ss_dssp             EEEBTTTTBTHHHHHHHH
T ss_pred             EEEEeCCCcCHHHHHhhC
Confidence            999999999999999865

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.88  E-value=1.5e-21  Score=162.06  Aligned_cols=156  Identities=21%  Similarity=0.225  Sum_probs=112.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC-------CCCCCcCcc------cccc-ceeEE--E---CCEEEEEEEEEcCCCcccc
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENK-------FPTDYVPTV------FDNY-PDTIT--V---DNKTYDVTLWDTAGQEDYE   85 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~-------~~~~~~~t~------~~~~-~~~~~--~---~~~~~~~~i~D~~g~~~~~   85 (205)
                      +|+++|+.++|||||+++|....       +...+..+.      +..+ ...+.  +   ++..+.+.+|||||+.+|.
T Consensus         5 Ni~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF~   84 (595)
T TIGR01393         5 NFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFS   84 (595)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHHH
Confidence            79999999999999999998642       222222221      2222 11222  2   5667899999999999998


Q ss_pred             cccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHH
Q psy15714         86 RLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKM  165 (205)
Q Consensus        86 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (205)
                      ..+..++..+|++|+|+|+++..+.+... .|...+.   .++|+++|+||+|+.....              .+...++
T Consensus        85 ~~v~~~l~~aD~aILVvDat~g~~~qt~~-~~~~~~~---~~ipiIiViNKiDl~~~~~--------------~~~~~el  146 (595)
T TIGR01393        85 YEVSRSLAACEGALLLVDAAQGIEAQTLA-NVYLALE---NDLEIIPVINKIDLPSADP--------------ERVKKEI  146 (595)
T ss_pred             HHHHHHHHhCCEEEEEecCCCCCCHhHHH-HHHHHHH---cCCCEEEEEECcCCCccCH--------------HHHHHHH
Confidence            88888999999999999999987776654 4544332   3789999999999864321              1122334


Q ss_pred             HHHcCCc--eEEEcccCCCCCHHHHHHHHHHHHHh
Q psy15714        166 RRKIKAA--EYLECSAKLNEGLDQVFIAAVRSAVK  198 (205)
Q Consensus       166 ~~~~~~~--~~~~~Sa~~~~~i~~~~~~i~~~~~~  198 (205)
                      .+.++..  .++++||++|.|++++|+++.+.+..
T Consensus       147 ~~~lg~~~~~vi~vSAktG~GI~~Lle~I~~~lp~  181 (595)
T TIGR01393       147 EEVIGLDASEAILASAKTGIGIEEILEAIVKRVPP  181 (595)
T ss_pred             HHHhCCCcceEEEeeccCCCCHHHHHHHHHHhCCC
Confidence            4444432  37999999999999999999987654

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>cd01895 EngA2 EngA2 subfamily

Probab=99.88  E-value=4.1e-21  Score=136.67  Aligned_cols=155  Identities=22%  Similarity=0.266  Sum_probs=103.4

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCC--CCCcCccccccceeEEECCEEEEEEEEEcCCCcccccc-----------cc
Q psy15714         23 ALKVTTVGDGMVGKTCLLITHTENKFP--TDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERL-----------RP   89 (205)
Q Consensus        23 ~~ki~v~G~~~~GKstli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-----------~~   89 (205)
                      .++|+++|.+|+|||||++++.+....  .....+...........++.  .+.+||+||.......           ..
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~iiDtpG~~~~~~~~~~~e~~~~~~~~   79 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGK--KYTLIDTAGIRRKGKVEEGIEKYSVLRTL   79 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCe--eEEEEECCCCccccchhccHHHHHHHHHH
Confidence            579999999999999999999987532  22222222222334445553  4789999996543110           11


Q ss_pred             cCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHH-HHHHHHH
Q psy15714         90 MSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQ-GKKMRRK  168 (205)
Q Consensus        90 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  168 (205)
                      ..+..+|++++|+|++++.+....  .++..+...  +.|+++++||+|+.....            ...++ ...+.+.
T Consensus        80 ~~~~~~d~vi~v~d~~~~~~~~~~--~~~~~~~~~--~~~~iiv~nK~Dl~~~~~------------~~~~~~~~~~~~~  143 (174)
T cd01895          80 KAIERADVVLLVIDATEGITEQDL--RIAGLILEE--GKALVIVVNKWDLVEKDS------------KTMKEFKKEIRRK  143 (174)
T ss_pred             HHHhhcCeEEEEEeCCCCcchhHH--HHHHHHHhc--CCCEEEEEeccccCCccH------------HHHHHHHHHHHhh
Confidence            245789999999999988776554  344444333  799999999999876521            11111 1122222


Q ss_pred             c---CCceEEEcccCCCCCHHHHHHHHHHH
Q psy15714        169 I---KAAEYLECSAKLNEGLDQVFIAAVRS  195 (205)
Q Consensus       169 ~---~~~~~~~~Sa~~~~~i~~~~~~i~~~  195 (205)
                      .   +..+++++||++++|++++++++.+.
T Consensus       144 ~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  173 (174)
T cd01895         144 LPFLDYAPIVFISALTGQGVDKLFDAIDEV  173 (174)
T ss_pred             cccccCCceEEEeccCCCCHHHHHHHHHHh
Confidence            2   23459999999999999999998764

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK00089 era GTPase Era; Reviewed

Probab=99.88  E-value=2.1e-21  Score=149.59  Aligned_cols=160  Identities=22%  Similarity=0.173  Sum_probs=108.7

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCC--CCcCccccccceeEEECCEEEEEEEEEcCCCccccc--------cccc
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTENKFPT--DYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYER--------LRPM   90 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~   90 (205)
                      .+.-.|+++|.+|+|||||+|++.+.++..  ....|+..........+  ..++.+|||||......        ....
T Consensus         3 ~~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~--~~qi~~iDTPG~~~~~~~l~~~~~~~~~~   80 (292)
T PRK00089          3 FKSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTED--DAQIIFVDTPGIHKPKRALNRAMNKAAWS   80 (292)
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcC--CceEEEEECCCCCCchhHHHHHHHHHHHH
Confidence            356789999999999999999999887632  22222222222122222  26899999999644221        1223


Q ss_pred             CcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcC
Q psy15714         91 SYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIK  170 (205)
Q Consensus        91 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (205)
                      .+..+|++++|+|+++..+  .....++..+...  +.|+++|+||+|+....            .........+.+..+
T Consensus        81 ~~~~~D~il~vvd~~~~~~--~~~~~i~~~l~~~--~~pvilVlNKiDl~~~~------------~~l~~~~~~l~~~~~  144 (292)
T PRK00089         81 SLKDVDLVLFVVDADEKIG--PGDEFILEKLKKV--KTPVILVLNKIDLVKDK------------EELLPLLEELSELMD  144 (292)
T ss_pred             HHhcCCEEEEEEeCCCCCC--hhHHHHHHHHhhc--CCCEEEEEECCcCCCCH------------HHHHHHHHHHHhhCC
Confidence            5788999999999988432  2222444444433  78999999999997432            122334455555556


Q ss_pred             CceEEEcccCCCCCHHHHHHHHHHHHHh
Q psy15714        171 AAEYLECSAKLNEGLDQVFIAAVRSAVK  198 (205)
Q Consensus       171 ~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  198 (205)
                      ...++++||+++.|++++++++.+.+..
T Consensus       145 ~~~i~~iSA~~~~gv~~L~~~L~~~l~~  172 (292)
T PRK00089        145 FAEIVPISALKGDNVDELLDVIAKYLPE  172 (292)
T ss_pred             CCeEEEecCCCCCCHHHHHHHHHHhCCC
Confidence            6669999999999999999999887643

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.88  E-value=9.4e-22  Score=138.22  Aligned_cols=142  Identities=16%  Similarity=0.139  Sum_probs=99.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcc-----cccccccCcCCCcEEE
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQED-----YERLRPMSYPNTDCFL   99 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~-----~~~~~~~~~~~~~~~i   99 (205)
                      +|+++|.+++|||||++++.+... . ...+      ..+.+...    .+||+||...     ++.+. ..+..+|+++
T Consensus         3 ~i~~iG~~~~GKstl~~~l~~~~~-~-~~~~------~~v~~~~~----~~iDtpG~~~~~~~~~~~~~-~~~~~ad~il   69 (158)
T PRK15467          3 RIAFVGAVGAGKTTLFNALQGNYT-L-ARKT------QAVEFNDK----GDIDTPGEYFSHPRWYHALI-TTLQDVDMLI   69 (158)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCc-c-Cccc------eEEEECCC----CcccCCccccCCHHHHHHHH-HHHhcCCEEE
Confidence            799999999999999999876431 1 1111      12223222    2699999732     22222 2378999999


Q ss_pred             EEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCC-ceEEEcc
Q psy15714        100 LCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKA-AEYLECS  178 (205)
Q Consensus       100 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~S  178 (205)
                      +|+|+++..++..   .|+..+   ..+.|+++++||+|+...               ..+...++++..+. .+++++|
T Consensus        70 ~v~d~~~~~s~~~---~~~~~~---~~~~~ii~v~nK~Dl~~~---------------~~~~~~~~~~~~~~~~p~~~~S  128 (158)
T PRK15467         70 YVHGANDPESRLP---AGLLDI---GVSKRQIAVISKTDMPDA---------------DVAATRKLLLETGFEEPIFELN  128 (158)
T ss_pred             EEEeCCCcccccC---HHHHhc---cCCCCeEEEEEccccCcc---------------cHHHHHHHHHHcCCCCCEEEEE
Confidence            9999998876533   343332   247899999999998542               23455666667765 3699999


Q ss_pred             cCCCCCHHHHHHHHHHHHHhhc
Q psy15714        179 AKLNEGLDQVFIAAVRSAVKKQ  200 (205)
Q Consensus       179 a~~~~~i~~~~~~i~~~~~~~~  200 (205)
                      |++|+|++++|+++.+.+.+..
T Consensus       129 a~~g~gi~~l~~~l~~~~~~~~  150 (158)
T PRK15467        129 SHDPQSVQQLVDYLASLTKQEE  150 (158)
T ss_pred             CCCccCHHHHHHHHHHhchhhh
Confidence            9999999999999988775543

>cd01889 SelB_euk SelB subfamily

Probab=99.88  E-value=1.5e-21  Score=141.61  Aligned_cols=160  Identities=20%  Similarity=0.124  Sum_probs=100.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcC----CCCCCCc-----CccccccceeEEE------------CCEEEEEEEEEcCCCc
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTEN----KFPTDYV-----PTVFDNYPDTITV------------DNKTYDVTLWDTAGQE   82 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~----~~~~~~~-----~t~~~~~~~~~~~------------~~~~~~~~i~D~~g~~   82 (205)
                      ++|+++|++++|||||+++|...    .+...+.     .|....+ ....+            .+..+.+.+||+||+.
T Consensus         1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~   79 (192)
T cd01889           1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGF-SSFYVDKPKHLRELINPGEENLQITLVDCPGHA   79 (192)
T ss_pred             CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecc-eEEEecccccccccccccccCceEEEEECCCcH
Confidence            48999999999999999999872    2211111     1111111 11222            2335789999999997


Q ss_pred             ccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHH
Q psy15714         83 DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQG  162 (205)
Q Consensus        83 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  162 (205)
                      .+..........+|++++|+|+.+..+..... .|. .....  +.|+++++||+|+......          ....++.
T Consensus        80 ~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~-~~~-~~~~~--~~~~iiv~NK~Dl~~~~~~----------~~~~~~~  145 (192)
T cd01889          80 SLIRTIIGGAQIIDLMLLVVDATKGIQTQTAE-CLV-IGEIL--CKKLIVVLNKIDLIPEEER----------ERKIEKM  145 (192)
T ss_pred             HHHHHHHHHHhhCCEEEEEEECCCCccHHHHH-HHH-HHHHc--CCCEEEEEECcccCCHHHH----------HHHHHHH
Confidence            65433333456789999999998765444332 222 22222  6899999999998743211          1111222


Q ss_pred             HH-HHHH-----cCCceEEEcccCCCCCHHHHHHHHHHHHHh
Q psy15714        163 KK-MRRK-----IKAAEYLECSAKLNEGLDQVFIAAVRSAVK  198 (205)
Q Consensus       163 ~~-~~~~-----~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  198 (205)
                      .+ +...     ....+++++||++|+|++++++++.+.+..
T Consensus       146 ~~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~  187 (192)
T cd01889         146 KKKLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIVL  187 (192)
T ss_pred             HHHHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhcccc
Confidence            21 1111     122349999999999999999999988764

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.87  E-value=1.5e-21  Score=140.13  Aligned_cols=151  Identities=19%  Similarity=0.163  Sum_probs=99.0

Q ss_pred             ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccce-eEEECCEEEEEEEEEcCCCc----------ccccc
Q psy15714         19 SVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPD-TITVDNKTYDVTLWDTAGQE----------DYERL   87 (205)
Q Consensus        19 ~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~D~~g~~----------~~~~~   87 (205)
                      ...+..+|+++|.+|+|||||++++.+..+...+.++.+..... ....++   .+.+||+||..          .+...
T Consensus        14 ~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~   90 (179)
T TIGR03598        14 PPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKL   90 (179)
T ss_pred             CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHH
Confidence            34677899999999999999999999886444444444333321 222232   58999999952          23222


Q ss_pred             cccCcC---CCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHH
Q psy15714         88 RPMSYP---NTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKK  164 (205)
Q Consensus        88 ~~~~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  164 (205)
                      ...+++   .++++++|+|++++-+..+.  .++..+...  +.|+++++||+|+......          ....++.+.
T Consensus        91 ~~~~l~~~~~~~~ii~vvd~~~~~~~~~~--~~~~~~~~~--~~pviiv~nK~D~~~~~~~----------~~~~~~i~~  156 (179)
T TIGR03598        91 IEEYLEKRENLKGVVLLMDIRHPLKELDL--EMLEWLRER--GIPVLIVLTKADKLKKSEL----------NKQLKKIKK  156 (179)
T ss_pred             HHHHHHhChhhcEEEEEecCCCCCCHHHH--HHHHHHHHc--CCCEEEEEECcccCCHHHH----------HHHHHHHHH
Confidence            223333   46899999999876555554  344555544  7999999999998753211          222344445


Q ss_pred             HHHHcCC-ceEEEcccCCCCCHH
Q psy15714        165 MRRKIKA-AEYLECSAKLNEGLD  186 (205)
Q Consensus       165 ~~~~~~~-~~~~~~Sa~~~~~i~  186 (205)
                      .....+. ..++++||++|+|++
T Consensus       157 ~l~~~~~~~~v~~~Sa~~g~gi~  179 (179)
T TIGR03598       157 ALKKDADDPSVQLFSSLKKTGID  179 (179)
T ss_pred             HHhhccCCCceEEEECCCCCCCC
Confidence            5554432 259999999999974

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.87  E-value=5.1e-21  Score=155.14  Aligned_cols=149  Identities=20%  Similarity=0.181  Sum_probs=106.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCC--CCCCcCccccccceeEEECCEEEEEEEEEcCCCcc--------cccccccCcC
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTENKF--PTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQED--------YERLRPMSYP   93 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~~~   93 (205)
                      .+|+++|.+|+|||||++++.+...  ...+..++.+.....+..++  ..+.+|||||...        +......++.
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~   79 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE   79 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence            5899999999999999999998764  33434443444444556666  6799999999876        2222345678


Q ss_pred             CCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCce
Q psy15714         94 NTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAE  173 (205)
Q Consensus        94 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (205)
                      .+|++++|+|+.+..+..+.  .+...+...  +.|+++|+||+|+....                +...++ ..++...
T Consensus        80 ~ad~il~vvd~~~~~~~~~~--~~~~~l~~~--~~piilv~NK~D~~~~~----------------~~~~~~-~~lg~~~  138 (435)
T PRK00093         80 EADVILFVVDGRAGLTPADE--EIAKILRKS--NKPVILVVNKVDGPDEE----------------ADAYEF-YSLGLGE  138 (435)
T ss_pred             hCCEEEEEEECCCCCCHHHH--HHHHHHHHc--CCcEEEEEECccCccch----------------hhHHHH-HhcCCCC
Confidence            99999999999886444332  233444444  89999999999964321                111222 2445545


Q ss_pred             EEEcccCCCCCHHHHHHHHHHH
Q psy15714        174 YLECSAKLNEGLDQVFIAAVRS  195 (205)
Q Consensus       174 ~~~~Sa~~~~~i~~~~~~i~~~  195 (205)
                      ++++||++|.|++++|+++.+.
T Consensus       139 ~~~iSa~~g~gv~~l~~~I~~~  160 (435)
T PRK00093        139 PYPISAEHGRGIGDLLDAILEE  160 (435)
T ss_pred             CEEEEeeCCCCHHHHHHHHHhh
Confidence            7999999999999999999873

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.87  E-value=1.2e-20  Score=150.21  Aligned_cols=157  Identities=22%  Similarity=0.222  Sum_probs=109.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCC-CCCcCccccccceeEEECCEEEEEEEEEcCCCcc----ccccccc---CcCCC
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTENKFP-TDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQED----YERLRPM---SYPNT   95 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~---~~~~~   95 (205)
                      ..|+++|.|+||||||++++++.+.. ..+..|+.......+.+++ ...+.+||+||...    ...+...   .++.+
T Consensus       159 adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~-~~~~~laD~PGliega~~~~gLg~~fLrhier~  237 (424)
T PRK12297        159 ADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDD-GRSFVMADIPGLIEGASEGVGLGHQFLRHIERT  237 (424)
T ss_pred             CcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeC-CceEEEEECCCCcccccccchHHHHHHHHHhhC
Confidence            48999999999999999999986632 2333333222222233331 25699999999642    2122222   35569


Q ss_pred             cEEEEEEECCCc---chHHHHHHHHHHHHhhhC---CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHc
Q psy15714         96 DCFLLCFSIGST---SSYENILSKWYPELKHHC---PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKI  169 (205)
Q Consensus        96 ~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (205)
                      +++++|+|+++.   ..+++.. .|...+..+.   .+.|++||+||+|+...                .+..+.+.+.+
T Consensus       238 ~llI~VID~s~~~~~dp~e~~~-~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~----------------~e~l~~l~~~l  300 (424)
T PRK12297        238 RVIVHVIDMSGSEGRDPIEDYE-KINKELKLYNPRLLERPQIVVANKMDLPEA----------------EENLEEFKEKL  300 (424)
T ss_pred             CEEEEEEeCCccccCChHHHHH-HHHHHHhhhchhccCCcEEEEEeCCCCcCC----------------HHHHHHHHHHh
Confidence            999999999864   5666665 7777777654   37999999999998432                12344555555


Q ss_pred             CCceEEEcccCCCCCHHHHHHHHHHHHHhh
Q psy15714        170 KAAEYLECSAKLNEGLDQVFIAAVRSAVKK  199 (205)
Q Consensus       170 ~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  199 (205)
                      +. +++++||++++|++++++++.+.+.+.
T Consensus       301 ~~-~i~~iSA~tgeGI~eL~~~L~~~l~~~  329 (424)
T PRK12297        301 GP-KVFPISALTGQGLDELLYAVAELLEET  329 (424)
T ss_pred             CC-cEEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence            54 489999999999999999998877553

>KOG0096|consensus

Probab=99.86  E-value=6.5e-22  Score=136.78  Aligned_cols=163  Identities=28%  Similarity=0.465  Sum_probs=137.9

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCE-EEEEEEEEcCCCcccccccccCcCCCcEEE
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNK-TYDVTLWDTAGQEDYERLRPMSYPNTDCFL   99 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   99 (205)
                      ...++++++|..|.||||+++++..+.|...+.+|.+......+...+. .+++..||++|++.+-.+...++=+....+
T Consensus         8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAi   87 (216)
T KOG0096|consen    8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAI   87 (216)
T ss_pred             cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeE
Confidence            4568999999999999999999999999999999998888665554443 599999999999999999888888999999


Q ss_pred             EEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEccc
Q psy15714        100 LCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSA  179 (205)
Q Consensus       100 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  179 (205)
                      ++||++.+-++.++. .|...+.+.+.|+|++++|||.|.....              .......+-+..++. +++.||
T Consensus        88 imFdVtsr~t~~n~~-rwhrd~~rv~~NiPiv~cGNKvDi~~r~--------------~k~k~v~~~rkknl~-y~~iSa  151 (216)
T KOG0096|consen   88 IMFDVTSRFTYKNVP-RWHRDLVRVRENIPIVLCGNKVDIKARK--------------VKAKPVSFHRKKNLQ-YYEISA  151 (216)
T ss_pred             EEeeeeehhhhhcch-HHHHHHHHHhcCCCeeeeccceeccccc--------------cccccceeeecccce-eEEeec
Confidence            999999999999987 8999998888899999999999976542              122223333444555 999999


Q ss_pred             CCCCCHHHHHHHHHHHHHhh
Q psy15714        180 KLNEGLDQVFIAAVRSAVKK  199 (205)
Q Consensus       180 ~~~~~i~~~~~~i~~~~~~~  199 (205)
                      +.+.|.+.-|.|+.+.+...
T Consensus       152 ksn~NfekPFl~LarKl~G~  171 (216)
T KOG0096|consen  152 KSNYNFERPFLWLARKLTGD  171 (216)
T ss_pred             ccccccccchHHHhhhhcCC
Confidence            99999999999999887643

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.86  E-value=8.4e-21  Score=161.40  Aligned_cols=162  Identities=21%  Similarity=0.158  Sum_probs=113.0

Q ss_pred             eeeEEEEECCCCCCHHHHHHHHhcCCC--CCCCcCccccccceeEEECCEEEEEEEEEcCCCcc----------cccc-c
Q psy15714         22 KALKVTTVGDGMVGKTCLLITHTENKF--PTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQED----------YERL-R   88 (205)
Q Consensus        22 ~~~ki~v~G~~~~GKstli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~~-~   88 (205)
                      ...||+++|.+++|||||++++.+...  ...+.+|+.+.+...+.+++..  +.+|||||..+          |..+ .
T Consensus       449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~--~~liDTaG~~~~~~~~~~~e~~~~~r~  526 (712)
T PRK09518        449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGED--WLFIDTAGIKRRQHKLTGAEYYSSLRT  526 (712)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCE--EEEEECCCcccCcccchhHHHHHHHHH
Confidence            457999999999999999999998864  3455556555555556677754  66999999532          2111 1


Q ss_pred             ccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHH
Q psy15714         89 PMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRK  168 (205)
Q Consensus        89 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (205)
                      ...++.+|++++|+|+++..+..+..  +...+...  ++|+++|+||+|+.+....          .....+.......
T Consensus       527 ~~~i~~advvilViDat~~~s~~~~~--i~~~~~~~--~~piIiV~NK~DL~~~~~~----------~~~~~~~~~~l~~  592 (712)
T PRK09518        527 QAAIERSELALFLFDASQPISEQDLK--VMSMAVDA--GRALVLVFNKWDLMDEFRR----------QRLERLWKTEFDR  592 (712)
T ss_pred             HHHhhcCCEEEEEEECCCCCCHHHHH--HHHHHHHc--CCCEEEEEEchhcCChhHH----------HHHHHHHHHhccC
Confidence            23468899999999999998887763  44555444  8999999999999753210          0001111111112


Q ss_pred             cCCceEEEcccCCCCCHHHHHHHHHHHHHhh
Q psy15714        169 IKAAEYLECSAKLNEGLDQVFIAAVRSAVKK  199 (205)
Q Consensus       169 ~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  199 (205)
                      ....+.+.+||++|.|++++|+.+.+...+.
T Consensus       593 ~~~~~ii~iSAktg~gv~~L~~~i~~~~~~~  623 (712)
T PRK09518        593 VTWARRVNLSAKTGWHTNRLAPAMQEALESW  623 (712)
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence            2334578999999999999999999887653

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.86  E-value=6.5e-21  Score=159.94  Aligned_cols=162  Identities=20%  Similarity=0.238  Sum_probs=112.4

Q ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccc---ccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCc
Q psy15714         20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFD---NYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTD   96 (205)
Q Consensus        20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~---~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   96 (205)
                      ..+..+|+++|..++|||||++++....+.....+.+..   .+......++....+.+|||||++.|..++...+..+|
T Consensus       241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aD  320 (742)
T CHL00189        241 INRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTD  320 (742)
T ss_pred             cccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCC
Confidence            457789999999999999999999987765433322211   11222333445578999999999999998888999999


Q ss_pred             EEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHH---HHHHcC-Cc
Q psy15714         97 CFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKK---MRRKIK-AA  172 (205)
Q Consensus        97 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~  172 (205)
                      ++|+|+|+++.......  +.+..+...  ++|++|++||+|+......          .+ .++...   +...++ ..
T Consensus       321 iaILVVDA~dGv~~QT~--E~I~~~k~~--~iPiIVViNKiDl~~~~~e----------~v-~~eL~~~~ll~e~~g~~v  385 (742)
T CHL00189        321 IAILIIAADDGVKPQTI--EAINYIQAA--NVPIIVAINKIDKANANTE----------RI-KQQLAKYNLIPEKWGGDT  385 (742)
T ss_pred             EEEEEEECcCCCChhhH--HHHHHHHhc--CceEEEEEECCCccccCHH----------HH-HHHHHHhccchHhhCCCc
Confidence            99999999886433332  122233333  8999999999998753210          00 011110   122232 35


Q ss_pred             eEEEcccCCCCCHHHHHHHHHHHH
Q psy15714        173 EYLECSAKLNEGLDQVFIAAVRSA  196 (205)
Q Consensus       173 ~~~~~Sa~~~~~i~~~~~~i~~~~  196 (205)
                      +++++||++|+|++++|+++....
T Consensus       386 pvv~VSAktG~GIdeLle~I~~l~  409 (742)
T CHL00189        386 PMIPISASQGTNIDKLLETILLLA  409 (742)
T ss_pred             eEEEEECCCCCCHHHHHHhhhhhh
Confidence            699999999999999999987754

>PRK11058 GTPase HflX; Provisional

Probab=99.86  E-value=2.1e-20  Score=149.57  Aligned_cols=156  Identities=21%  Similarity=0.168  Sum_probs=106.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCC-CCcCccccccceeEEECCEEEEEEEEEcCCCccc--ccccc------cCcCC
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTENKFPT-DYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY--ERLRP------MSYPN   94 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~--~~~~~------~~~~~   94 (205)
                      .+|+++|.+++|||||+|++.+..+.. +...++.+.....+...+. ..+.+|||+|..+.  ...+.      ..+..
T Consensus       198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~  276 (426)
T PRK11058        198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETRQ  276 (426)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence            589999999999999999999876432 2223333333334445442 25789999997431  11122      23688


Q ss_pred             CcEEEEEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCce
Q psy15714         95 TDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAE  173 (205)
Q Consensus        95 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (205)
                      +|++++|+|++++.+...+. .|...+.... .++|+++|+||+|+.....            . ...    ....+...
T Consensus       277 ADlIL~VvDaS~~~~~e~l~-~v~~iL~el~~~~~pvIiV~NKiDL~~~~~------------~-~~~----~~~~~~~~  338 (426)
T PRK11058        277 ATLLLHVVDAADVRVQENIE-AVNTVLEEIDAHEIPTLLVMNKIDMLDDFE------------P-RID----RDEENKPI  338 (426)
T ss_pred             CCEEEEEEeCCCccHHHHHH-HHHHHHHHhccCCCCEEEEEEcccCCCchh------------H-HHH----HHhcCCCc
Confidence            99999999999998777764 4555555443 4799999999999864310            0 000    01123332


Q ss_pred             EEEcccCCCCCHHHHHHHHHHHHHh
Q psy15714        174 YLECSAKLNEGLDQVFIAAVRSAVK  198 (205)
Q Consensus       174 ~~~~Sa~~~~~i~~~~~~i~~~~~~  198 (205)
                      ++.+||++|+|++++++++.+.+..
T Consensus       339 ~v~ISAktG~GIdeL~e~I~~~l~~  363 (426)
T PRK11058        339 RVWLSAQTGAGIPLLFQALTERLSG  363 (426)
T ss_pred             eEEEeCCCCCCHHHHHHHHHHHhhh
Confidence            5889999999999999999988754

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.86  E-value=1.5e-20  Score=151.56  Aligned_cols=164  Identities=17%  Similarity=0.119  Sum_probs=107.9

Q ss_pred             ccceeeEEEEECCCCCCHHHHHHHHhcCCCC-CCCcCccccccceeEEECCEEEEEEEEEcCCCcc----cccc---ccc
Q psy15714         19 SVHKALKVTTVGDGMVGKTCLLITHTENKFP-TDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQED----YERL---RPM   90 (205)
Q Consensus        19 ~~~~~~ki~v~G~~~~GKstli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~---~~~   90 (205)
                      .-+....|+++|.|+||||||++++.+.+.. ..+..|+.......+.+++  ..+.+||+||...    ...+   +-.
T Consensus       155 eLk~~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLr  232 (500)
T PRK12296        155 ELKSVADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLR  232 (500)
T ss_pred             EecccceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHH
Confidence            3345578999999999999999999976542 2334443333233444555  5799999999532    1111   112


Q ss_pred             CcCCCcEEEEEEECCCc----chHHHHHHHHHHHHhhhC------------CCCCEEEEeeCcccccCchhhhhhhhhcc
Q psy15714         91 SYPNTDCFLLCFSIGST----SSYENILSKWYPELKHHC------------PKVPIILVGTKADLRSENKTIDKKKAAEV  154 (205)
Q Consensus        91 ~~~~~~~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~------------~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~  154 (205)
                      .++.++++|+|+|+++.    ..+.++. .|...+..+.            .+.|++||+||+|+....           
T Consensus       233 hieradvLv~VVD~s~~e~~rdp~~d~~-~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~-----------  300 (500)
T PRK12296        233 HIERCAVLVHVVDCATLEPGRDPLSDID-ALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDAR-----------  300 (500)
T ss_pred             HHHhcCEEEEEECCcccccccCchhhHH-HHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhH-----------
Confidence            46789999999999853    3344433 4444443332            378999999999986542           


Q ss_pred             ccccHHHHHHHHHHcCCceEEEcccCCCCCHHHHHHHHHHHHHhh
Q psy15714        155 DLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKK  199 (205)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  199 (205)
                       .+ .+.........+.. ++++||++++|+++++.+|.+.+...
T Consensus       301 -el-~e~l~~~l~~~g~~-Vf~ISA~tgeGLdEL~~~L~ell~~~  342 (500)
T PRK12296        301 -EL-AEFVRPELEARGWP-VFEVSAASREGLRELSFALAELVEEA  342 (500)
T ss_pred             -HH-HHHHHHHHHHcCCe-EEEEECCCCCCHHHHHHHHHHHHHhh
Confidence             11 11222222334544 99999999999999999998887654

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.86  E-value=1.1e-20  Score=156.78  Aligned_cols=159  Identities=19%  Similarity=0.161  Sum_probs=110.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCC---CCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEE
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTENK---FPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFL   99 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~~---~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   99 (205)
                      +.|+++|..++|||||+++|.+..   +...+...+.... ...+..++  ..+.+||+||++.|.......+.++|+++
T Consensus         1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI   78 (581)
T TIGR00475         1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL   78 (581)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence            468999999999999999999633   2222222222121 12334444  67999999999999888778889999999


Q ss_pred             EEEECCCcchHHHHHHHHHHHHhhhCCCCC-EEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcC---CceEE
Q psy15714        100 LCFSIGSTSSYENILSKWYPELKHHCPKVP-IILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIK---AAEYL  175 (205)
Q Consensus       100 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~  175 (205)
                      +|+|+++....+..  +.+..+...  ++| ++||+||+|+.+....          ....++...+.+..+   ..+++
T Consensus        79 LVVDa~~G~~~qT~--ehl~il~~l--gi~~iIVVlNK~Dlv~~~~~----------~~~~~ei~~~l~~~~~~~~~~ii  144 (581)
T TIGR00475        79 LVVDADEGVMTQTG--EHLAVLDLL--GIPHTIVVITKADRVNEEEI----------KRTEMFMKQILNSYIFLKNAKIF  144 (581)
T ss_pred             EEEECCCCCcHHHH--HHHHHHHHc--CCCeEEEEEECCCCCCHHHH----------HHHHHHHHHHHHHhCCCCCCcEE
Confidence            99999984322221  223334333  788 9999999999764311          122345555555543   34599


Q ss_pred             EcccCCCCCHHHHHHHHHHHHHh
Q psy15714        176 ECSAKLNEGLDQVFIAAVRSAVK  198 (205)
Q Consensus       176 ~~Sa~~~~~i~~~~~~i~~~~~~  198 (205)
                      ++||++|+|+++++.++...+..
T Consensus       145 ~vSA~tG~GI~eL~~~L~~l~~~  167 (581)
T TIGR00475       145 KTSAKTGQGIGELKKELKNLLES  167 (581)
T ss_pred             EEeCCCCCCchhHHHHHHHHHHh
Confidence            99999999999999988776544

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.86  E-value=1.1e-20  Score=153.00  Aligned_cols=151  Identities=21%  Similarity=0.198  Sum_probs=109.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCC--CCCCcCccccccceeEEECCEEEEEEEEEcCCCc--------ccccccccCcCC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENKF--PTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQE--------DYERLRPMSYPN   94 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~--------~~~~~~~~~~~~   94 (205)
                      +|+++|.+|+|||||++++.+...  ...+..++.+.....+..++  ..+.+|||||..        .+......+++.
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~   78 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGG--REFILIDTGGIEEDDDGLDKQIREQAEIAIEE   78 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECC--eEEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence            589999999999999999998763  23334444444444555566  459999999963        233444557889


Q ss_pred             CcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceE
Q psy15714         95 TDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEY  174 (205)
Q Consensus        95 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (205)
                      +|++++|+|+.+..+..+.  .+...+++.  +.|+++|+||+|+....            ..    ..+ ...++..++
T Consensus        79 ad~vl~vvD~~~~~~~~d~--~i~~~l~~~--~~piilVvNK~D~~~~~------------~~----~~~-~~~lg~~~~  137 (429)
T TIGR03594        79 ADVILFVVDGREGLTPEDE--EIAKWLRKS--GKPVILVANKIDGKKED------------AV----AAE-FYSLGFGEP  137 (429)
T ss_pred             CCEEEEEEeCCCCCCHHHH--HHHHHHHHh--CCCEEEEEECccCCccc------------cc----HHH-HHhcCCCCe
Confidence            9999999999876554442  455556555  89999999999987542            11    111 235566568


Q ss_pred             EEcccCCCCCHHHHHHHHHHHHHh
Q psy15714        175 LECSAKLNEGLDQVFIAAVRSAVK  198 (205)
Q Consensus       175 ~~~Sa~~~~~i~~~~~~i~~~~~~  198 (205)
                      +++||++|.|++++++++.+.+..
T Consensus       138 ~~vSa~~g~gv~~ll~~i~~~l~~  161 (429)
T TIGR03594       138 IPISAEHGRGIGDLLDAILELLPE  161 (429)
T ss_pred             EEEeCCcCCChHHHHHHHHHhcCc
Confidence            999999999999999999887644

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>KOG0074|consensus

Probab=99.86  E-value=3.2e-21  Score=127.24  Aligned_cols=164  Identities=20%  Similarity=0.250  Sum_probs=121.9

Q ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEE
Q psy15714         20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFL   99 (205)
Q Consensus        20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   99 (205)
                      ..+++||+++|..++|||||+..+..... ....||.+... +.+..++ .+.+.+||++|+...+..|..++.+.|++|
T Consensus        14 t~rEirilllGldnAGKTT~LKqL~sED~-~hltpT~GFn~-k~v~~~g-~f~LnvwDiGGqr~IRpyWsNYyenvd~lI   90 (185)
T KOG0074|consen   14 TRREIRILLLGLDNAGKTTFLKQLKSEDP-RHLTPTNGFNT-KKVEYDG-TFHLNVWDIGGQRGIRPYWSNYYENVDGLI   90 (185)
T ss_pred             CcceEEEEEEecCCCcchhHHHHHccCCh-hhccccCCcce-EEEeecC-cEEEEEEecCCccccchhhhhhhhccceEE
Confidence            36789999999999999999998887764 33455555443 3343433 478999999999999999999999999999


Q ss_pred             EEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcc
Q psy15714        100 LCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECS  178 (205)
Q Consensus       100 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  178 (205)
                      ||+|.+|...|+++.+++...++.-- ..+|+++.+||.|+....+..+..          ..+.-..-....+++-+||
T Consensus        91 yVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia----------~klnl~~lrdRswhIq~cs  160 (185)
T KOG0074|consen   91 YVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIA----------LKLNLAGLRDRSWHIQECS  160 (185)
T ss_pred             EEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHH----------HhcchhhhhhceEEeeeCc
Confidence            99999999999988766666665433 589999999999987643211100          0000011112345578999


Q ss_pred             cCCCCCHHHHHHHHHHHH
Q psy15714        179 AKLNEGLDQVFIAAVRSA  196 (205)
Q Consensus       179 a~~~~~i~~~~~~i~~~~  196 (205)
                      |.+++|+.+--+|+.+..
T Consensus       161 als~eg~~dg~~wv~sn~  178 (185)
T KOG0074|consen  161 ALSLEGSTDGSDWVQSNP  178 (185)
T ss_pred             cccccCccCcchhhhcCC
Confidence            999999998888887654

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.86  E-value=2.3e-20  Score=157.89  Aligned_cols=163  Identities=22%  Similarity=0.228  Sum_probs=111.2

Q ss_pred             ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcE
Q psy15714         19 SVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDC   97 (205)
Q Consensus        19 ~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   97 (205)
                      ...+...|+++|..++|||||++++..+.+.....+.+.... ...+..++  ..+++|||||++.|..++...+..+|+
T Consensus       286 ~~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDi  363 (787)
T PRK05306        286 LVPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDI  363 (787)
T ss_pred             cccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCE
Confidence            356888999999999999999999998777544333221111 23344444  568999999999999988888999999


Q ss_pred             EEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcC-CceEEE
Q psy15714         98 FLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIK-AAEYLE  176 (205)
Q Consensus        98 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  176 (205)
                      +|+|||+++...-+... .| .....  .++|++|++||+|+...+...-.. ..       .+...++..++ ..++++
T Consensus       364 aILVVdAddGv~~qT~e-~i-~~a~~--~~vPiIVviNKiDl~~a~~e~V~~-eL-------~~~~~~~e~~g~~vp~vp  431 (787)
T PRK05306        364 VVLVVAADDGVMPQTIE-AI-NHAKA--AGVPIIVAINKIDKPGANPDRVKQ-EL-------SEYGLVPEEWGGDTIFVP  431 (787)
T ss_pred             EEEEEECCCCCCHhHHH-HH-HHHHh--cCCcEEEEEECccccccCHHHHHH-HH-------HHhcccHHHhCCCceEEE
Confidence            99999998853322221 22 22333  389999999999996532110000 00       00111222333 245999


Q ss_pred             cccCCCCCHHHHHHHHHHH
Q psy15714        177 CSAKLNEGLDQVFIAAVRS  195 (205)
Q Consensus       177 ~Sa~~~~~i~~~~~~i~~~  195 (205)
                      +||++|+|++++|++|...
T Consensus       432 vSAktG~GI~eLle~I~~~  450 (787)
T PRK05306        432 VSAKTGEGIDELLEAILLQ  450 (787)
T ss_pred             EeCCCCCCchHHHHhhhhh
Confidence            9999999999999998754

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.85  E-value=1e-20  Score=136.84  Aligned_cols=161  Identities=20%  Similarity=0.207  Sum_probs=109.2

Q ss_pred             eeeEEEEECCCCCCHHHHHHHHhcCCCCCCC-------------cCc-c--cccc-ceeEEEC--CEEEEEEEEEcCCCc
Q psy15714         22 KALKVTTVGDGMVGKTCLLITHTENKFPTDY-------------VPT-V--FDNY-PDTITVD--NKTYDVTLWDTAGQE   82 (205)
Q Consensus        22 ~~~ki~v~G~~~~GKstli~~~~~~~~~~~~-------------~~t-~--~~~~-~~~~~~~--~~~~~~~i~D~~g~~   82 (205)
                      +..+|+++|+.++|||||++++....-....             .+. .  +... .......  .....+.++|+||+.
T Consensus         2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~   81 (188)
T PF00009_consen    2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE   81 (188)
T ss_dssp             TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred             CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence            4578999999999999999998854321110             000 0  1111 1122222  444679999999999


Q ss_pred             ccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHH
Q psy15714         83 DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQG  162 (205)
Q Consensus        83 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  162 (205)
                      .|.......+..+|++|+|+|+.+.......  +.+..+...  ++|++|++||+|+...+..          ....+..
T Consensus        82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~~~--~~l~~~~~~--~~p~ivvlNK~D~~~~~~~----------~~~~~~~  147 (188)
T PF00009_consen   82 DFIKEMIRGLRQADIAILVVDANDGIQPQTE--EHLKILREL--GIPIIVVLNKMDLIEKELE----------EIIEEIK  147 (188)
T ss_dssp             HHHHHHHHHHTTSSEEEEEEETTTBSTHHHH--HHHHHHHHT--T-SEEEEEETCTSSHHHHH----------HHHHHHH
T ss_pred             ceeecccceecccccceeeeecccccccccc--ccccccccc--ccceEEeeeeccchhhhHH----------HHHHHHH
Confidence            9888777779999999999999877554332  455666666  8999999999999833211          1112222


Q ss_pred             HHHHHHcC-----CceEEEcccCCCCCHHHHHHHHHHHH
Q psy15714        163 KKMRRKIK-----AAEYLECSAKLNEGLDQVFIAAVRSA  196 (205)
Q Consensus       163 ~~~~~~~~-----~~~~~~~Sa~~~~~i~~~~~~i~~~~  196 (205)
                      ..+.+..+     ..+++.+||.+|+|++++++.+.+.+
T Consensus       148 ~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~  186 (188)
T PF00009_consen  148 EKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELL  186 (188)
T ss_dssp             HHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred             HHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence            24444442     34699999999999999999998764

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.85  E-value=3.6e-20  Score=150.16  Aligned_cols=162  Identities=19%  Similarity=0.169  Sum_probs=109.1

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCC--CCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccc-----------
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTENKF--PTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERL-----------   87 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-----------   87 (205)
                      ...++|+++|.+++|||||++++++...  ......++.......+..++  ..+.+|||||.......           
T Consensus       171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~lvDT~G~~~~~~~~~~~e~~~~~~  248 (435)
T PRK00093        171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG--QKYTLIDTAGIRRKGKVTEGVEKYSVIR  248 (435)
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC--eeEEEEECCCCCCCcchhhHHHHHHHHH
Confidence            3579999999999999999999997642  23333333333333344555  45788999996432211           


Q ss_pred             cccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHH
Q psy15714         88 RPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRR  167 (205)
Q Consensus        88 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (205)
                      ....++.+|++++|+|++++.+..+.  .+...+...  +.|+++|+||+|+......          ....++......
T Consensus       249 ~~~~~~~ad~~ilViD~~~~~~~~~~--~i~~~~~~~--~~~~ivv~NK~Dl~~~~~~----------~~~~~~~~~~l~  314 (435)
T PRK00093        249 TLKAIERADVVLLVIDATEGITEQDL--RIAGLALEA--GRALVIVVNKWDLVDEKTM----------EEFKKELRRRLP  314 (435)
T ss_pred             HHHHHHHCCEEEEEEeCCCCCCHHHH--HHHHHHHHc--CCcEEEEEECccCCCHHHH----------HHHHHHHHHhcc
Confidence            12357789999999999998776665  455555544  7999999999998743210          011111222222


Q ss_pred             HcCCceEEEcccCCCCCHHHHHHHHHHHHHh
Q psy15714        168 KIKAAEYLECSAKLNEGLDQVFIAAVRSAVK  198 (205)
Q Consensus       168 ~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  198 (205)
                      .....+++++||++|.|++++|+.+.+....
T Consensus       315 ~~~~~~i~~~SA~~~~gv~~l~~~i~~~~~~  345 (435)
T PRK00093        315 FLDYAPIVFISALTGQGVDKLLEAIDEAYEN  345 (435)
T ss_pred             cccCCCEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            2344569999999999999999998876654

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.85  E-value=1.9e-20  Score=136.87  Aligned_cols=116  Identities=22%  Similarity=0.169  Sum_probs=76.9

Q ss_pred             EEEEEEEcCCCcccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhh
Q psy15714         71 YDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKK  150 (205)
Q Consensus        71 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~  150 (205)
                      ..+.+||+||++.+...+...+..+|++++|+|++++....... ..+..+... ...|+++|+||+|+......     
T Consensus        83 ~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~-~~l~~~~~~-~~~~iiivvNK~Dl~~~~~~-----  155 (203)
T cd01888          83 RHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTS-EHLAALEIM-GLKHIIIVQNKIDLVKEEQA-----  155 (203)
T ss_pred             cEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchH-HHHHHHHHc-CCCcEEEEEEchhccCHHHH-----
Confidence            67999999999988777777788899999999998741111111 122222222 23479999999998653211     


Q ss_pred             hhccccccHHHHHHHHHHc--CCceEEEcccCCCCCHHHHHHHHHHHHHh
Q psy15714        151 AAEVDLVSTSQGKKMRRKI--KAAEYLECSAKLNEGLDQVFIAAVRSAVK  198 (205)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  198 (205)
                           ....++.+++....  ...+++++||++|+|++++|+++.+.+..
T Consensus       156 -----~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~  200 (203)
T cd01888         156 -----LENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPT  200 (203)
T ss_pred             -----HHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence                 11123333443332  22348999999999999999999876543

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.85  E-value=8.1e-20  Score=144.71  Aligned_cols=162  Identities=19%  Similarity=0.137  Sum_probs=111.2

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCC-CCCcCccccccceeEEECCEEEEEEEEEcCCCccccc----c---cccCcCC
Q psy15714         23 ALKVTTVGDGMVGKTCLLITHTENKFP-TDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYER----L---RPMSYPN   94 (205)
Q Consensus        23 ~~ki~v~G~~~~GKstli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~----~---~~~~~~~   94 (205)
                      -..|+++|.|+||||||++++++.+.. ..+..|+.....-.+...+ ...+.++|+||...-..    +   .-..++.
T Consensus       159 iadValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~-~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~r  237 (390)
T PRK12298        159 LADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDD-ERSFVVADIPGLIEGASEGAGLGIRFLKHLER  237 (390)
T ss_pred             cccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCC-CcEEEEEeCCCccccccchhhHHHHHHHHHHh
Confidence            347999999999999999999976542 3334444333333344432 23588999999643110    1   1124788


Q ss_pred             CcEEEEEEECC---CcchHHHHHHHHHHHHhhhC---CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHH
Q psy15714         95 TDCFLLCFSIG---STSSYENILSKWYPELKHHC---PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRK  168 (205)
Q Consensus        95 ~~~~i~v~d~~---~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (205)
                      ++++++|+|++   +...++.+. .|+..+..+.   .+.|+++|+||+|+....            .+ .+..+.+.+.
T Consensus       238 advlL~VVD~s~~~~~d~~e~~~-~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~------------el-~~~l~~l~~~  303 (390)
T PRK12298        238 CRVLLHLIDIAPIDGSDPVENAR-IIINELEKYSPKLAEKPRWLVFNKIDLLDEE------------EA-EERAKAIVEA  303 (390)
T ss_pred             CCEEEEEeccCcccccChHHHHH-HHHHHHHhhhhhhcCCCEEEEEeCCccCChH------------HH-HHHHHHHHHH
Confidence            99999999988   445666654 7777777654   478999999999986532            11 2333444444


Q ss_pred             cCC-ceEEEcccCCCCCHHHHHHHHHHHHHhh
Q psy15714        169 IKA-AEYLECSAKLNEGLDQVFIAAVRSAVKK  199 (205)
Q Consensus       169 ~~~-~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  199 (205)
                      .+. .+++.+||+++.|+++++++|.+.+...
T Consensus       304 ~~~~~~Vi~ISA~tg~GIdeLl~~I~~~L~~~  335 (390)
T PRK12298        304 LGWEGPVYLISAASGLGVKELCWDLMTFIEEN  335 (390)
T ss_pred             hCCCCCEEEEECCCCcCHHHHHHHHHHHhhhC
Confidence            432 2489999999999999999999887653

>KOG1707|consensus

Probab=99.84  E-value=5.8e-21  Score=152.23  Aligned_cols=169  Identities=21%  Similarity=0.333  Sum_probs=127.2

Q ss_pred             ccccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCc
Q psy15714         17 SKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTD   96 (205)
Q Consensus        17 ~~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   96 (205)
                      +....+.+||+++|+.|+||||||-++...++.+..++.. ..+.....+....+...|.|++....-+......++.+|
T Consensus         3 ~~~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl-~~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~   81 (625)
T KOG1707|consen    3 DDETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRL-PRILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKAD   81 (625)
T ss_pred             CccCccceEEEEECCCCccHHHHHHHHHhhhccccccccC-CccccCCccCcCcCceEEEecccccchhHHHHHHHhhcC
Confidence            3445678999999999999999999999999876644432 222211222233355888899877665555566789999


Q ss_pred             EEEEEEECCCcchHHHHHHHHHHHHhhhC---CCCCEEEEeeCcccccCchhhhhhhhhccccccHHH-H-HHHHHHcCC
Q psy15714         97 CFLLCFSIGSTSSYENILSKWYPELKHHC---PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQ-G-KKMRRKIKA  171 (205)
Q Consensus        97 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~  171 (205)
                      ++.+||+++++++++.+..+|+..+++..   .++|+|+||||+|......            .+.+. . .-+.....+
T Consensus        82 vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~------------~s~e~~~~pim~~f~Ei  149 (625)
T KOG1707|consen   82 VICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNEN------------NSDEVNTLPIMIAFAEI  149 (625)
T ss_pred             EEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccc------------cchhHHHHHHHHHhHHH
Confidence            99999999999999999999999999988   7999999999999987642            21122 1 112222244


Q ss_pred             ceEEEcccCCCCCHHHHHHHHHHHHHh
Q psy15714        172 AEYLECSAKLNEGLDQVFIAAVRSAVK  198 (205)
Q Consensus       172 ~~~~~~Sa~~~~~i~~~~~~i~~~~~~  198 (205)
                      ..+++|||++..++.++|....++++.
T Consensus       150 EtciecSA~~~~n~~e~fYyaqKaVih  176 (625)
T KOG1707|consen  150 ETCIECSALTLANVSELFYYAQKAVIH  176 (625)
T ss_pred             HHHHhhhhhhhhhhHhhhhhhhheeec
Confidence            457999999999999999988777654

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.84  E-value=1.5e-19  Score=149.46  Aligned_cols=170  Identities=16%  Similarity=0.124  Sum_probs=105.1

Q ss_pred             eeeEEEEECCCCCCHHHHHHHHhcCCCCCCC----cCccccccceeE-------------EECCEEEEEEEEEcCCCccc
Q psy15714         22 KALKVTTVGDGMVGKTCLLITHTENKFPTDY----VPTVFDNYPDTI-------------TVDNKTYDVTLWDTAGQEDY   84 (205)
Q Consensus        22 ~~~ki~v~G~~~~GKstli~~~~~~~~~~~~----~~t~~~~~~~~~-------------~~~~~~~~~~i~D~~g~~~~   84 (205)
                      +..-|+++|.+++|||||++++.+..+....    ..+++..+....             .++.....+.+|||||++.|
T Consensus         3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f   82 (590)
T TIGR00491         3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF   82 (590)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH
Confidence            4457999999999999999999988765332    222222221100             00111124889999999999


Q ss_pred             ccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhh-----h-------
Q psy15714         85 ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKA-----A-------  152 (205)
Q Consensus        85 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~-----~-------  152 (205)
                      ..++..+++.+|++++|||+++..+.+..  +.+..+...  ++|+++++||+|+............     .       
T Consensus        83 ~~l~~~~~~~aD~~IlVvD~~~g~~~qt~--e~i~~l~~~--~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~~  158 (590)
T TIGR00491        83 TNLRKRGGALADLAILIVDINEGFKPQTQ--EALNILRMY--KTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQQ  158 (590)
T ss_pred             HHHHHHHHhhCCEEEEEEECCcCCCHhHH--HHHHHHHHc--CCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHHH
Confidence            99888889999999999999874322222  222333333  8999999999999642110000000     0       


Q ss_pred             -------------ccccccHHHHHHHHHHcCCceEEEcccCCCCCHHHHHHHHHHH
Q psy15714        153 -------------EVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRS  195 (205)
Q Consensus       153 -------------~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  195 (205)
                                   ....+..+.........+..+++++||++|+|+++++.++...
T Consensus       159 ~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l  214 (590)
T TIGR00491       159 NLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGL  214 (590)
T ss_pred             HHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHH
Confidence                         0000000100111111234569999999999999999988653

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>KOG0076|consensus

Probab=99.84  E-value=8.3e-21  Score=129.58  Aligned_cols=163  Identities=21%  Similarity=0.287  Sum_probs=121.8

Q ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCC---C----CCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCc
Q psy15714         20 VHKALKVTTVGDGMVGKTCLLITHTENK---F----PTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSY   92 (205)
Q Consensus        20 ~~~~~ki~v~G~~~~GKstli~~~~~~~---~----~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~   92 (205)
                      .+..+.++++|..++|||||+.+.....   +    .....+|.+-.. -.+.+++  ..+.+||.+|++..+++|..++
T Consensus        14 ~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLni-g~i~v~~--~~l~fwdlgGQe~lrSlw~~yY   90 (197)
T KOG0076|consen   14 KKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNI-GTIEVCN--APLSFWDLGGQESLRSLWKKYY   90 (197)
T ss_pred             hhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceee-cceeecc--ceeEEEEcCChHHHHHHHHHHH
Confidence            3567889999999999999997665421   1    122334433333 2333443  5699999999999999999999


Q ss_pred             CCCcEEEEEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHH---HHH
Q psy15714         93 PNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKM---RRK  168 (205)
Q Consensus        93 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~  168 (205)
                      ..++++++++|+++++.++.....+-..+..-. .++|+++.+||.|+.+.-.              ..+....   +..
T Consensus        91 ~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~--------------~~El~~~~~~~e~  156 (197)
T KOG0076|consen   91 WLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAME--------------AAELDGVFGLAEL  156 (197)
T ss_pred             HHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhh--------------HHHHHHHhhhhhh
Confidence            999999999999999999998866666665544 7999999999999877532              2222211   222


Q ss_pred             c--CCceEEEcccCCCCCHHHHHHHHHHHHHhh
Q psy15714        169 I--KAAEYLECSAKLNEGLDQVFIAAVRSAVKK  199 (205)
Q Consensus       169 ~--~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  199 (205)
                      .  ...++.++||.+|+||++...|++..+.+.
T Consensus       157 ~~~rd~~~~pvSal~gegv~egi~w~v~~~~kn  189 (197)
T KOG0076|consen  157 IPRRDNPFQPVSALTGEGVKEGIEWLVKKLEKN  189 (197)
T ss_pred             cCCccCccccchhhhcccHHHHHHHHHHHHhhc
Confidence            2  223489999999999999999999988776

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.84  E-value=2.8e-19  Score=133.07  Aligned_cols=150  Identities=20%  Similarity=0.165  Sum_probs=100.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCC-CCCCcCccccccceeEEECCEEEEEEEEEcCCCccccc-------ccccCcCCCc
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENKF-PTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYER-------LRPMSYPNTD   96 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-------~~~~~~~~~~   96 (205)
                      +|+++|.+|+|||||++++.+... ...+..++.......+.+++  ..+++||+||......       .....++++|
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad   79 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD   79 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence            789999999999999999998753 22333333333334455666  5789999999754321       1234688999


Q ss_pred             EEEEEEECCCcch-HHHHHHH-----------------------------------------------------------
Q psy15714         97 CFLLCFSIGSTSS-YENILSK-----------------------------------------------------------  116 (205)
Q Consensus        97 ~~i~v~d~~~~~s-~~~~~~~-----------------------------------------------------------  116 (205)
                      ++++|+|++++.. ...+...                                                           
T Consensus        80 ~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~  159 (233)
T cd01896          80 LILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRE  159 (233)
T ss_pred             EEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEcc
Confidence            9999999987652 2222111                                                           


Q ss_pred             ------HHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCCCCCHHHHHH
Q psy15714        117 ------WYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFI  190 (205)
Q Consensus       117 ------~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  190 (205)
                            +.+.+......+|+++|+||+|+...                 ++...+++.   .+++++||+++.|++++|+
T Consensus       160 ~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~-----------------~~~~~~~~~---~~~~~~SA~~g~gi~~l~~  219 (233)
T cd01896         160 DITVDDLIDVIEGNRVYIPCLYVYNKIDLISI-----------------EELDLLARQ---PNSVVISAEKGLNLDELKE  219 (233)
T ss_pred             CCCHHHHHHHHhCCceEeeEEEEEECccCCCH-----------------HHHHHHhcC---CCEEEEcCCCCCCHHHHHH
Confidence                  11111111235799999999997542                 233344433   2389999999999999999


Q ss_pred             HHHHHH
Q psy15714        191 AAVRSA  196 (205)
Q Consensus       191 ~i~~~~  196 (205)
                      .+.+.+
T Consensus       220 ~i~~~L  225 (233)
T cd01896         220 RIWDKL  225 (233)
T ss_pred             HHHHHh
Confidence            998764

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>KOG1423|consensus

Probab=99.84  E-value=4.8e-20  Score=136.87  Aligned_cols=180  Identities=17%  Similarity=0.166  Sum_probs=120.6

Q ss_pred             cccccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcc------c-----
Q psy15714         16 KSKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQED------Y-----   84 (205)
Q Consensus        16 ~~~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~------~-----   84 (205)
                      ......+.++|+|+|.|++|||||.|.+.+.+..........+.....-.+.....++.++|+||-..      +     
T Consensus        65 de~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s  144 (379)
T KOG1423|consen   65 DEEEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMS  144 (379)
T ss_pred             CchhcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHH
Confidence            34567899999999999999999999999999876555554444444434445567899999999321      1     


Q ss_pred             -ccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchh-hhhhhhhccccccH---
Q psy15714         85 -ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKT-IDKKKAAEVDLVST---  159 (205)
Q Consensus        85 -~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~---  159 (205)
                       ....+..+..+|.+++|+|+++...  .+....+..++++. ++|-++|.||.|....... ..+...+...+++.   
T Consensus       145 ~lq~~~~a~q~AD~vvVv~Das~tr~--~l~p~vl~~l~~ys-~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl  221 (379)
T KOG1423|consen  145 VLQNPRDAAQNADCVVVVVDASATRT--PLHPRVLHMLEEYS-KIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKL  221 (379)
T ss_pred             hhhCHHHHHhhCCEEEEEEeccCCcC--ccChHHHHHHHHHh-cCCceeeccchhcchhhhHHhhhHHhccccccchhhh
Confidence             1112345778999999999997433  23335666666654 8999999999998765443 22222333333332   


Q ss_pred             HHHHHHHH---------Hc---CCceEEEcccCCCCCHHHHHHHHHHHHHh
Q psy15714        160 SQGKKMRR---------KI---KAAEYLECSAKLNEGLDQVFIAAVRSAVK  198 (205)
Q Consensus       160 ~~~~~~~~---------~~---~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  198 (205)
                      +....+.-         ..   +...+|.+||.+|+||+++-+++...+..
T Consensus       222 ~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~  272 (379)
T KOG1423|consen  222 EVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPP  272 (379)
T ss_pred             hHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCC
Confidence            11111110         11   12237999999999999999999887654

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.83  E-value=7.7e-20  Score=151.95  Aligned_cols=145  Identities=14%  Similarity=0.179  Sum_probs=102.9

Q ss_pred             CCCCCCHHHHHHHHhcCCCC-CCCcCccccccceeEEECCEEEEEEEEEcCCCcccccc------cccC--cCCCcEEEE
Q psy15714         30 GDGMVGKTCLLITHTENKFP-TDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERL------RPMS--YPNTDCFLL  100 (205)
Q Consensus        30 G~~~~GKstli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~------~~~~--~~~~~~~i~  100 (205)
                      |++|+|||||+|++.+..+. .++..++.+.....+.+++.  ++.+||+||+.++...      .+.+  ...+|++++
T Consensus         1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~--~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~   78 (591)
T TIGR00437         1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGE--DIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN   78 (591)
T ss_pred             CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCe--EEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence            89999999999999987653 23333322222344555663  5799999999876543      2222  247899999


Q ss_pred             EEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccC
Q psy15714        101 CFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAK  180 (205)
Q Consensus       101 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  180 (205)
                      |+|+++.+..   . ++...+.+.  ++|+++|+||+|+.+..            .+. .+.+.+++..+.. ++++||+
T Consensus        79 VvDat~ler~---l-~l~~ql~~~--~~PiIIVlNK~Dl~~~~------------~i~-~d~~~L~~~lg~p-vv~tSA~  138 (591)
T TIGR00437        79 VVDASNLERN---L-YLTLQLLEL--GIPMILALNLVDEAEKK------------GIR-IDEEKLEERLGVP-VVPTSAT  138 (591)
T ss_pred             EecCCcchhh---H-HHHHHHHhc--CCCEEEEEehhHHHHhC------------CCh-hhHHHHHHHcCCC-EEEEECC
Confidence            9999875432   2 333344343  89999999999986542            222 3456777788876 9999999


Q ss_pred             CCCCHHHHHHHHHHHH
Q psy15714        181 LNEGLDQVFIAAVRSA  196 (205)
Q Consensus       181 ~~~~i~~~~~~i~~~~  196 (205)
                      +|+|++++++++.+..
T Consensus       139 tg~Gi~eL~~~i~~~~  154 (591)
T TIGR00437       139 EGRGIERLKDAIRKAI  154 (591)
T ss_pred             CCCCHHHHHHHHHHHh
Confidence            9999999999998753

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>cd00880 Era_like Era (E

Probab=99.83  E-value=8.5e-20  Score=127.77  Aligned_cols=153  Identities=20%  Similarity=0.160  Sum_probs=101.6

Q ss_pred             EECCCCCCHHHHHHHHhcCCCCC--CCcCccccccceeEEECCEEEEEEEEEcCCCccccccc-------ccCcCCCcEE
Q psy15714         28 TVGDGMVGKTCLLITHTENKFPT--DYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLR-------PMSYPNTDCF   98 (205)
Q Consensus        28 v~G~~~~GKstli~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~-------~~~~~~~~~~   98 (205)
                      ++|++|+|||||++++.+.....  ...++............. ...+.+||+||...+....       ...+..+|++
T Consensus         1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i   79 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADLI   79 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence            58999999999999999865431  112222222222222221 4579999999977654333       3467899999


Q ss_pred             EEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcc
Q psy15714         99 LLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECS  178 (205)
Q Consensus        99 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  178 (205)
                      ++|+|+.+..+.....  |.......  +.|+++|+||+|+.........          ..............+++++|
T Consensus        80 l~v~~~~~~~~~~~~~--~~~~~~~~--~~~~ivv~nK~D~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~s  145 (163)
T cd00880          80 LFVVDADLRADEEEEK--LLELLRER--GKPVLLVLNKIDLLPEEEEEEL----------LELRLLILLLLLGLPVIAVS  145 (163)
T ss_pred             EEEEeCCCCCCHHHHH--HHHHHHhc--CCeEEEEEEccccCChhhHHHH----------HHHHHhhcccccCCceEEEe
Confidence            9999999887766653  44444433  8999999999998765321110          00111222233344599999


Q ss_pred             cCCCCCHHHHHHHHHHH
Q psy15714        179 AKLNEGLDQVFIAAVRS  195 (205)
Q Consensus       179 a~~~~~i~~~~~~i~~~  195 (205)
                      |.++.|++++++++.+.
T Consensus       146 a~~~~~v~~l~~~l~~~  162 (163)
T cd00880         146 ALTGEGIDELREALIEA  162 (163)
T ss_pred             eeccCCHHHHHHHHHhh
Confidence            99999999999999865

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>COG1159 Era GTPase [General function prediction only]

Probab=99.83  E-value=1.5e-19  Score=134.54  Aligned_cols=162  Identities=19%  Similarity=0.168  Sum_probs=115.2

Q ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCC--CCCcCccccccceeEEECCEEEEEEEEEcCCCccccc--------ccc
Q psy15714         20 VHKALKVTTVGDGMVGKTCLLITHTENKFP--TDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYER--------LRP   89 (205)
Q Consensus        20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~   89 (205)
                      ..+.-.|+++|.|++|||||+|++.+.+..  ..-..|+.....-.+..+  ..++.+.||||-..-+.        ...
T Consensus         3 ~~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~--~~QiIfvDTPGih~pk~~l~~~m~~~a~   80 (298)
T COG1159           3 KFKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTD--NAQIIFVDTPGIHKPKHALGELMNKAAR   80 (298)
T ss_pred             CceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcC--CceEEEEeCCCCCCcchHHHHHHHHHHH
Confidence            356778999999999999999999998864  333444444444444444  46788889999433211        122


Q ss_pred             cCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHc
Q psy15714         90 MSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKI  169 (205)
Q Consensus        90 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (205)
                      ..+..+|+++||+|+++...-.+  +..+..++.  .+.|+++++||+|...+.            ..-......+....
T Consensus        81 ~sl~dvDlilfvvd~~~~~~~~d--~~il~~lk~--~~~pvil~iNKID~~~~~------------~~l~~~~~~~~~~~  144 (298)
T COG1159          81 SALKDVDLILFVVDADEGWGPGD--EFILEQLKK--TKTPVILVVNKIDKVKPK------------TVLLKLIAFLKKLL  144 (298)
T ss_pred             HHhccCcEEEEEEeccccCCccH--HHHHHHHhh--cCCCeEEEEEccccCCcH------------HHHHHHHHHHHhhC
Confidence            45788999999999988554433  145555555  378999999999988764            21133444455555


Q ss_pred             CCceEEEcccCCCCCHHHHHHHHHHHHHhh
Q psy15714        170 KAAEYLECSAKLNEGLDQVFIAAVRSAVKK  199 (205)
Q Consensus       170 ~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  199 (205)
                      .....+++||++|.|++.+.+.+...+.+.
T Consensus       145 ~f~~ivpiSA~~g~n~~~L~~~i~~~Lpeg  174 (298)
T COG1159         145 PFKEIVPISALKGDNVDTLLEIIKEYLPEG  174 (298)
T ss_pred             CcceEEEeeccccCCHHHHHHHHHHhCCCC
Confidence            666699999999999999999988776543

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.83  E-value=4.4e-19  Score=122.73  Aligned_cols=159  Identities=15%  Similarity=0.171  Sum_probs=118.4

Q ss_pred             cccceeeEEEEECCCCCCHHHHHHHHhcCCCCC--------CCcC----ccccccceeEEECCEEEEEEEEEcCCCcccc
Q psy15714         18 KSVHKALKVTTVGDGMVGKTCLLITHTENKFPT--------DYVP----TVFDNYPDTITVDNKTYDVTLWDTAGQEDYE   85 (205)
Q Consensus        18 ~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~--------~~~~----t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~   85 (205)
                      .......||+|.|+.++||||+++++.......        .+..    |..-++.. +.+++ ...+.++++|||++|+
T Consensus         5 ~~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~-~~~~~-~~~v~LfgtPGq~RF~   82 (187)
T COG2229           5 ANKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGS-IELDE-DTGVHLFGTPGQERFK   82 (187)
T ss_pred             cccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccc-eEEcC-cceEEEecCCCcHHHH
Confidence            345678999999999999999999999876411        1111    11111111 11222 2568899999999999


Q ss_pred             cccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHH
Q psy15714         86 RLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKM  165 (205)
Q Consensus        86 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (205)
                      -.|+..++++.++|+++|.+.+..++. . +.+..+.... .+|++|+.||+||.+.              .+.+..+++
T Consensus        83 fm~~~l~~ga~gaivlVDss~~~~~~a-~-~ii~f~~~~~-~ip~vVa~NK~DL~~a--------------~ppe~i~e~  145 (187)
T COG2229          83 FMWEILSRGAVGAIVLVDSSRPITFHA-E-EIIDFLTSRN-PIPVVVAINKQDLFDA--------------LPPEKIREA  145 (187)
T ss_pred             HHHHHHhCCcceEEEEEecCCCcchHH-H-HHHHHHhhcc-CCCEEEEeeccccCCC--------------CCHHHHHHH
Confidence            999999999999999999999988833 3 5666666552 2999999999999984              555666666


Q ss_pred             HHHc-CCceEEEcccCCCCCHHHHHHHHHHH
Q psy15714        166 RRKI-KAAEYLECSAKLNEGLDQVFIAAVRS  195 (205)
Q Consensus       166 ~~~~-~~~~~~~~Sa~~~~~i~~~~~~i~~~  195 (205)
                      .+.. --.+.++.+|..+++..+.++.+...
T Consensus       146 l~~~~~~~~vi~~~a~e~~~~~~~L~~ll~~  176 (187)
T COG2229         146 LKLELLSVPVIEIDATEGEGARDQLDVLLLK  176 (187)
T ss_pred             HHhccCCCceeeeecccchhHHHHHHHHHhh
Confidence            5555 23449999999999999999888765

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.83  E-value=1.9e-19  Score=153.23  Aligned_cols=155  Identities=18%  Similarity=0.118  Sum_probs=105.6

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCC--CCCCcCccccccceeEEECCEEEEEEEEEcCCCcc--------ccccccc
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTENKF--PTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQED--------YERLRPM   90 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~   90 (205)
                      ....+|+++|.+++|||||++++++...  ......++.+........++  ..+.+|||||.+.        +......
T Consensus       273 ~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~  350 (712)
T PRK09518        273 KAVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG--TDFKLVDTGGWEADVEGIDSAIASQAQI  350 (712)
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC--EEEEEEeCCCcCCCCccHHHHHHHHHHH
Confidence            3456899999999999999999998754  22222222222222333444  4688999999753        2222344


Q ss_pred             CcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcC
Q psy15714         91 SYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIK  170 (205)
Q Consensus        91 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (205)
                      +++.+|++++|+|+.+.-..  ....|...++..  +.|+++|+||+|+....               ......+  ..+
T Consensus       351 ~~~~aD~iL~VvDa~~~~~~--~d~~i~~~Lr~~--~~pvIlV~NK~D~~~~~---------------~~~~~~~--~lg  409 (712)
T PRK09518        351 AVSLADAVVFVVDGQVGLTS--TDERIVRMLRRA--GKPVVLAVNKIDDQASE---------------YDAAEFW--KLG  409 (712)
T ss_pred             HHHhCCEEEEEEECCCCCCH--HHHHHHHHHHhc--CCCEEEEEECcccccch---------------hhHHHHH--HcC
Confidence            67899999999999865332  223566666654  89999999999985421               1111112  233


Q ss_pred             CceEEEcccCCCCCHHHHHHHHHHHHHh
Q psy15714        171 AAEYLECSAKLNEGLDQVFIAAVRSAVK  198 (205)
Q Consensus       171 ~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  198 (205)
                      ....+++||++|.|++++|+++++.+..
T Consensus       410 ~~~~~~iSA~~g~GI~eLl~~i~~~l~~  437 (712)
T PRK09518        410 LGEPYPISAMHGRGVGDLLDEALDSLKV  437 (712)
T ss_pred             CCCeEEEECCCCCCchHHHHHHHHhccc
Confidence            3336799999999999999999988754

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.83  E-value=3.2e-19  Score=148.40  Aligned_cols=158  Identities=20%  Similarity=0.197  Sum_probs=109.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcC--CCCC-----CCcC------cccccc-ceeEEE-----CCEEEEEEEEEcCCCccc
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTEN--KFPT-----DYVP------TVFDNY-PDTITV-----DNKTYDVTLWDTAGQEDY   84 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~--~~~~-----~~~~------t~~~~~-~~~~~~-----~~~~~~~~i~D~~g~~~~   84 (205)
                      -+|+++|+.++|||||+.++...  .+..     .+..      +.+..+ ...+.+     ++..+.+++|||||+.+|
T Consensus         8 RNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~dF   87 (600)
T PRK05433          8 RNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVDF   87 (600)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHHH
Confidence            48999999999999999999853  2211     1100      111111 112222     456789999999999999


Q ss_pred             ccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHH
Q psy15714         85 ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKK  164 (205)
Q Consensus        85 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  164 (205)
                      ...+...+..+|++++|+|+++..+..... .|.... .  .++|+++|+||+|+.....              .....+
T Consensus        88 ~~~v~~sl~~aD~aILVVDas~gv~~qt~~-~~~~~~-~--~~lpiIvViNKiDl~~a~~--------------~~v~~e  149 (600)
T PRK05433         88 SYEVSRSLAACEGALLVVDASQGVEAQTLA-NVYLAL-E--NDLEIIPVLNKIDLPAADP--------------ERVKQE  149 (600)
T ss_pred             HHHHHHHHHHCCEEEEEEECCCCCCHHHHH-HHHHHH-H--CCCCEEEEEECCCCCcccH--------------HHHHHH
Confidence            888888899999999999999876665543 454332 2  3799999999999865321              111222


Q ss_pred             HHHHcCCc--eEEEcccCCCCCHHHHHHHHHHHHHhh
Q psy15714        165 MRRKIKAA--EYLECSAKLNEGLDQVFIAAVRSAVKK  199 (205)
Q Consensus       165 ~~~~~~~~--~~~~~Sa~~~~~i~~~~~~i~~~~~~~  199 (205)
                      +.+.++..  .++++||++|.|+++++++|.+.+...
T Consensus       150 i~~~lg~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~P  186 (600)
T PRK05433        150 IEDVIGIDASDAVLVSAKTGIGIEEVLEAIVERIPPP  186 (600)
T ss_pred             HHHHhCCCcceEEEEecCCCCCHHHHHHHHHHhCccc
Confidence            33333332  379999999999999999999876543

>cd04167 Snu114p Snu114p subfamily

Probab=99.82  E-value=1.5e-19  Score=133.24  Aligned_cols=158  Identities=16%  Similarity=0.088  Sum_probs=98.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCC-----------cCcc------cccc-ceeEE--E---CCEEEEEEEEEcCCC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENKFPTDY-----------VPTV------FDNY-PDTIT--V---DNKTYDVTLWDTAGQ   81 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~~~~~~-----------~~t~------~~~~-~~~~~--~---~~~~~~~~i~D~~g~   81 (205)
                      +|+++|+.++|||||++++.........           ..+.      +..+ .....  .   ++..+.+.+||+||+
T Consensus         2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~   81 (213)
T cd04167           2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH   81 (213)
T ss_pred             cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence            5899999999999999999875433210           1110      1111 01111  1   355688999999999


Q ss_pred             cccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHH
Q psy15714         82 EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQ  161 (205)
Q Consensus        82 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~  161 (205)
                      ..|.......+..+|++++|+|+++..+....  .|+......  +.|+++|+||+|+..........+....-....++
T Consensus        82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~--~~~~~~~~~--~~p~iiviNK~D~~~~~~~l~~~~~~~~l~~~i~~  157 (213)
T cd04167          82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNTE--RLIRHAILE--GLPIVLVINKIDRLILELKLPPNDAYFKLRHIIDE  157 (213)
T ss_pred             cchHHHHHHHHHhCCEEEEEEECCCCCCHHHH--HHHHHHHHc--CCCEEEEEECcccCcccccCCHHHHHHHHHHHHHH
Confidence            99877777788999999999999887765432  454544433  69999999999986221100000000000112233


Q ss_pred             HHHHHHHcCC------ce----EEEcccCCCCCHH
Q psy15714        162 GKKMRRKIKA------AE----YLECSAKLNEGLD  186 (205)
Q Consensus       162 ~~~~~~~~~~------~~----~~~~Sa~~~~~i~  186 (205)
                      ....+...+.      .|    +++.|++.++++.
T Consensus       158 ~n~~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~~~  192 (213)
T cd04167         158 VNNIIASFSTTLSFLFSPENGNVCFASSKFGFCFT  192 (213)
T ss_pred             HHHHHHHhcCCCceEeccCCCeEEEEecCCCeEEe
Confidence            4444444433      22    6789999998875

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>KOG4423|consensus

Probab=99.82  E-value=9.5e-22  Score=135.59  Aligned_cols=170  Identities=23%  Similarity=0.364  Sum_probs=143.5

Q ss_pred             ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccc-eeE-EECCEEEEEEEEEcCCCcccccccccCcCCCc
Q psy15714         19 SVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYP-DTI-TVDNKTYDVTLWDTAGQEDYERLRPMSYPNTD   96 (205)
Q Consensus        19 ~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~-~~~-~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   96 (205)
                      .....+|++|+|..|+|||+++.++....|+..|..+++..+- +.. +-+...+.+++||++|++++..+.+.+++.+.
T Consensus        21 kr~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~  100 (229)
T KOG4423|consen   21 KREHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAH  100 (229)
T ss_pred             hhhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCc
Confidence            3467789999999999999999999999999999999988873 333 33445578999999999999999999999999


Q ss_pred             EEEEEEECCCcchHHHHHHHHHHHHhhhC-----CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCC
Q psy15714         97 CFLLCFSIGSTSSYENILSKWYPELKHHC-----PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKA  171 (205)
Q Consensus        97 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (205)
                      +..+|||++..-+|+... .|...+....     ..+|+++..||+|......           .-......++.++++.
T Consensus       101 ~~~iVfdvt~s~tfe~~s-kwkqdldsk~qLpng~Pv~~vllankCd~e~~a~-----------~~~~~~~d~f~kengf  168 (229)
T KOG4423|consen  101 GAFIVFDVTRSLTFEPVS-KWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAK-----------NEATRQFDNFKKENGF  168 (229)
T ss_pred             ceEEEEEccccccccHHH-HHHHhccCcccCCCCCcchheeccchhccChHhh-----------hhhHHHHHHHHhccCc
Confidence            999999999999999987 8988886544     4688999999999876431           1123556778888999


Q ss_pred             ceEEEcccCCCCCHHHHHHHHHHHHHhhc
Q psy15714        172 AEYLECSAKLNEGLDQVFIAAVRSAVKKQ  200 (205)
Q Consensus       172 ~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~  200 (205)
                      ...+++|++.+.+++|+-+.+++.+.-+.
T Consensus       169 ~gwtets~Kenkni~Ea~r~lVe~~lvnd  197 (229)
T KOG4423|consen  169 EGWTETSAKENKNIPEAQRELVEKILVND  197 (229)
T ss_pred             cceeeeccccccChhHHHHHHHHHHHhhc
Confidence            88999999999999999999999987654

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.82  E-value=6.8e-19  Score=149.64  Aligned_cols=153  Identities=14%  Similarity=0.104  Sum_probs=109.7

Q ss_pred             eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCccccccc----------cc
Q psy15714         22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLR----------PM   90 (205)
Q Consensus        22 ~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~----------~~   90 (205)
                      +.++|+++|++++|||||+|++++.....  .+..+... .+...+.....++.+||+||...+....          +.
T Consensus         2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~v--gn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~   79 (772)
T PRK09554          2 KKLTIGLIGNPNSGKTTLFNQLTGARQRV--GNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACH   79 (772)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCCCCcc--CCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHH
Confidence            45799999999999999999999865421  22223333 2233344445679999999987765321          11


Q ss_pred             C--cCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHH
Q psy15714         91 S--YPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRK  168 (205)
Q Consensus        91 ~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (205)
                      +  ...+|++++|+|+++.+...    +|...+.+.  ++|+++++||+|+.+.+            .+ ....+.+.+.
T Consensus        80 ~l~~~~aD~vI~VvDat~ler~l----~l~~ql~e~--giPvIvVlNK~Dl~~~~------------~i-~id~~~L~~~  140 (772)
T PRK09554         80 YILSGDADLLINVVDASNLERNL----YLTLQLLEL--GIPCIVALNMLDIAEKQ------------NI-RIDIDALSAR  140 (772)
T ss_pred             HHhccCCCEEEEEecCCcchhhH----HHHHHHHHc--CCCEEEEEEchhhhhcc------------Cc-HHHHHHHHHH
Confidence            2  24789999999998865422    344555555  89999999999987542            22 3455677778


Q ss_pred             cCCceEEEcccCCCCCHHHHHHHHHHHH
Q psy15714        169 IKAAEYLECSAKLNEGLDQVFIAAVRSA  196 (205)
Q Consensus       169 ~~~~~~~~~Sa~~~~~i~~~~~~i~~~~  196 (205)
                      ++.+ ++++||.+++|++++++.+.+..
T Consensus       141 LG~p-VvpiSA~~g~GIdeL~~~I~~~~  167 (772)
T PRK09554        141 LGCP-VIPLVSTRGRGIEALKLAIDRHQ  167 (772)
T ss_pred             hCCC-EEEEEeecCCCHHHHHHHHHHhh
Confidence            8876 99999999999999999987764

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.81  E-value=7.3e-19  Score=124.40  Aligned_cols=154  Identities=18%  Similarity=0.135  Sum_probs=98.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccc-eeEEECCEEEEEEEEEcCCCcc----------cccccccCc-
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYP-DTITVDNKTYDVTLWDTAGQED----------YERLRPMSY-   92 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~----------~~~~~~~~~-   92 (205)
                      .|+++|.+|+|||||++++.++.+.....++.+.... .....++   .+.+||+||...          +......++ 
T Consensus         1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~   77 (170)
T cd01876           1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE   77 (170)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence            3799999999999999999976665555555443332 1222222   799999999533          223222233 


Q ss_pred             --CCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHH-Hc
Q psy15714         93 --PNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRR-KI  169 (205)
Q Consensus        93 --~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  169 (205)
                        ...+++++++|..+..+....  .....+...  +.|+++++||+|+......          ...........+ ..
T Consensus        78 ~~~~~~~~~~v~d~~~~~~~~~~--~~~~~l~~~--~~~vi~v~nK~D~~~~~~~----------~~~~~~~~~~l~~~~  143 (170)
T cd01876          78 NRENLKGVVLLIDSRHGPTEIDL--EMLDWLEEL--GIPFLVVLTKADKLKKSEL----------AKALKEIKKELKLFE  143 (170)
T ss_pred             hChhhhEEEEEEEcCcCCCHhHH--HHHHHHHHc--CCCEEEEEEchhcCChHHH----------HHHHHHHHHHHHhcc
Confidence              346788999998766332221  233334333  6899999999998643211          112222232332 23


Q ss_pred             CCceEEEcccCCCCCHHHHHHHHHHH
Q psy15714        170 KAAEYLECSAKLNEGLDQVFIAAVRS  195 (205)
Q Consensus       170 ~~~~~~~~Sa~~~~~i~~~~~~i~~~  195 (205)
                      ...+++++||+++.|++++++++.+.
T Consensus       144 ~~~~~~~~Sa~~~~~~~~l~~~l~~~  169 (170)
T cd01876         144 IDPPIILFSSLKGQGIDELRALIEKW  169 (170)
T ss_pred             CCCceEEEecCCCCCHHHHHHHHHHh
Confidence            44558999999999999999998764

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.81  E-value=3.4e-19  Score=120.64  Aligned_cols=136  Identities=22%  Similarity=0.199  Sum_probs=100.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCc----ccccccccCcCCCcEEEE
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQE----DYERLRPMSYPNTDCFLL  100 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~----~~~~~~~~~~~~~~~~i~  100 (205)
                      ||+++|+.|+|||||++++.+.....  ..|.      .+.+.+     .++|+||.-    .+.........++|.+++
T Consensus         3 rimliG~~g~GKTTL~q~L~~~~~~~--~KTq------~i~~~~-----~~IDTPGEyiE~~~~y~aLi~ta~dad~V~l   69 (143)
T PF10662_consen    3 RIMLIGPSGSGKTTLAQALNGEEIRY--KKTQ------AIEYYD-----NTIDTPGEYIENPRFYHALIVTAQDADVVLL   69 (143)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCCCCc--Cccc------eeEecc-----cEEECChhheeCHHHHHHHHHHHhhCCEEEE
Confidence            79999999999999999999877532  2221      122222     236999942    233333345678999999


Q ss_pred             EEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccC
Q psy15714        101 CFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAK  180 (205)
Q Consensus       101 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  180 (205)
                      +.|++++.+.-.-  .+...+     +.|+|-|+||+|+...             ....+.++.+.+.-|....|++|+.
T Consensus        70 l~dat~~~~~~pP--~fa~~f-----~~pvIGVITK~Dl~~~-------------~~~i~~a~~~L~~aG~~~if~vS~~  129 (143)
T PF10662_consen   70 LQDATEPRSVFPP--GFASMF-----NKPVIGVITKIDLPSD-------------DANIERAKKWLKNAGVKEIFEVSAV  129 (143)
T ss_pred             EecCCCCCccCCc--hhhccc-----CCCEEEEEECccCccc-------------hhhHHHHHHHHHHcCCCCeEEEECC
Confidence            9999987543221  222222     7899999999999843             3456788889999999889999999


Q ss_pred             CCCCHHHHHHHHH
Q psy15714        181 LNEGLDQVFIAAV  193 (205)
Q Consensus       181 ~~~~i~~~~~~i~  193 (205)
                      +|+|++++.++|-
T Consensus       130 ~~eGi~eL~~~L~  142 (143)
T PF10662_consen  130 TGEGIEELKDYLE  142 (143)
T ss_pred             CCcCHHHHHHHHh
Confidence            9999999998874

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.81  E-value=7.4e-19  Score=141.91  Aligned_cols=161  Identities=11%  Similarity=0.037  Sum_probs=100.5

Q ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcC--CCCCC----------------------CcCc-----ccccc-ceeEEECCE
Q psy15714         20 VHKALKVTTVGDGMVGKTCLLITHTEN--KFPTD----------------------YVPT-----VFDNY-PDTITVDNK   69 (205)
Q Consensus        20 ~~~~~ki~v~G~~~~GKstli~~~~~~--~~~~~----------------------~~~t-----~~~~~-~~~~~~~~~   69 (205)
                      .+..++|+++|.+++|||||+++++..  .+...                      .+.+     .+... .....+...
T Consensus         3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~   82 (425)
T PRK12317          3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD   82 (425)
T ss_pred             CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence            466799999999999999999999832  21110                      0000     01111 111223344


Q ss_pred             EEEEEEEEcCCCcccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhh
Q psy15714         70 TYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKK  149 (205)
Q Consensus        70 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~  149 (205)
                      .+++.+||+||++.|.......+..+|++++|+|+++...+......++..+... ...|+++++||+|+.......   
T Consensus        83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~-~~~~iivviNK~Dl~~~~~~~---  158 (425)
T PRK12317         83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL-GINQLIVAINKMDAVNYDEKR---  158 (425)
T ss_pred             CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc-CCCeEEEEEEccccccccHHH---
Confidence            5789999999998886655556789999999999987322222111233333333 224699999999997522100   


Q ss_pred             hhhccccccHHHHHHHHHHcCC----ceEEEcccCCCCCHHHHH
Q psy15714        150 KAAEVDLVSTSQGKKMRRKIKA----AEYLECSAKLNEGLDQVF  189 (205)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~~~  189 (205)
                           .....++...+.+..+.    .+++++||++|+|+++.+
T Consensus       159 -----~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~  197 (425)
T PRK12317        159 -----YEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS  197 (425)
T ss_pred             -----HHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence                 01233455566655553    459999999999998743

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.81  E-value=8.5e-19  Score=137.34  Aligned_cols=150  Identities=20%  Similarity=0.160  Sum_probs=113.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCC--CCCCcCccccccceeEEECCEEEEEEEEEcCCCcccc---------cccccCc
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTENKF--PTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYE---------RLRPMSY   92 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~---------~~~~~~~   92 (205)
                      ..|+++|.|++|||||+||+.+.+.  .+.+..++.+.........+..  |.++||+|-+...         ......+
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~--f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai   81 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGRE--FILIDTGGLDDGDEDELQELIREQALIAI   81 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCce--EEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence            5799999999999999999998865  4666777766666666666644  8888999965322         1233457


Q ss_pred             CCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCc
Q psy15714         93 PNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAA  172 (205)
Q Consensus        93 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (205)
                      ..+|+++||+|....-+-.+-  .....+++.  +.|+++|+||+|-..                 .++.....-++|.-
T Consensus        82 ~eADvilfvVD~~~Git~~D~--~ia~~Lr~~--~kpviLvvNK~D~~~-----------------~e~~~~efyslG~g  140 (444)
T COG1160          82 EEADVILFVVDGREGITPADE--EIAKILRRS--KKPVILVVNKIDNLK-----------------AEELAYEFYSLGFG  140 (444)
T ss_pred             HhCCEEEEEEeCCCCCCHHHH--HHHHHHHhc--CCCEEEEEEcccCch-----------------hhhhHHHHHhcCCC
Confidence            889999999999776554442  455666644  799999999999542                 23333344566777


Q ss_pred             eEEEcccCCCCCHHHHHHHHHHHH
Q psy15714        173 EYLECSAKLNEGLDQVFIAAVRSA  196 (205)
Q Consensus       173 ~~~~~Sa~~~~~i~~~~~~i~~~~  196 (205)
                      ..+.+||..|.|+.++++++++.+
T Consensus       141 ~~~~ISA~Hg~Gi~dLld~v~~~l  164 (444)
T COG1160         141 EPVPISAEHGRGIGDLLDAVLELL  164 (444)
T ss_pred             CceEeehhhccCHHHHHHHHHhhc
Confidence            789999999999999999999987

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.80  E-value=5.3e-19  Score=142.70  Aligned_cols=161  Identities=12%  Similarity=0.045  Sum_probs=102.7

Q ss_pred             cceeeEEEEECCCCCCHHHHHHHHhc--CCCCCCC----------------------cCcc-----cccc-ceeEEECCE
Q psy15714         20 VHKALKVTTVGDGMVGKTCLLITHTE--NKFPTDY----------------------VPTV-----FDNY-PDTITVDNK   69 (205)
Q Consensus        20 ~~~~~ki~v~G~~~~GKstli~~~~~--~~~~~~~----------------------~~t~-----~~~~-~~~~~~~~~   69 (205)
                      .+..++|+++|+.++|||||+++|+.  +.+....                      +.+.     +... .....+...
T Consensus         4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~   83 (426)
T TIGR00483         4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD   83 (426)
T ss_pred             CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence            45668999999999999999999985  3322100                      0000     0000 011223344


Q ss_pred             EEEEEEEEcCCCcccccccccCcCCCcEEEEEEECCCcchHHHHHH-HHHHHHhhhCCCCCEEEEeeCcccccCchhhhh
Q psy15714         70 TYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILS-KWYPELKHHCPKVPIILVGTKADLRSENKTIDK  148 (205)
Q Consensus        70 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~  148 (205)
                      .+.+.+||+||++.|.......+..+|++++|+|+++.++...... .++... ......|++|++||+|+.......  
T Consensus        84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~-~~~~~~~iIVviNK~Dl~~~~~~~--  160 (426)
T TIGR00483        84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLA-RTLGINQLIVAINKMDSVNYDEEE--  160 (426)
T ss_pred             CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHH-HHcCCCeEEEEEEChhccCccHHH--
Confidence            5789999999999887665567889999999999998753311110 122222 222345799999999996422100  


Q ss_pred             hhhhccccccHHHHHHHHHHcCC----ceEEEcccCCCCCHHHHH
Q psy15714        149 KKAAEVDLVSTSQGKKMRRKIKA----AEYLECSAKLNEGLDQVF  189 (205)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~~~  189 (205)
                            .....++.+.+++..+.    .+++++||++|+|+++.+
T Consensus       161 ------~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~  199 (426)
T TIGR00483       161 ------FEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKS  199 (426)
T ss_pred             ------HHHHHHHHHHHHHHcCCCcccceEEEeeccccccccccc
Confidence                  02234566677776653    459999999999998633

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.80  E-value=7.1e-19  Score=140.90  Aligned_cols=164  Identities=20%  Similarity=0.124  Sum_probs=103.4

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcc------ccc-----------------cceeEEECC------EEE
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV------FDN-----------------YPDTITVDN------KTY   71 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~------~~~-----------------~~~~~~~~~------~~~   71 (205)
                      +..++|+++|..++|||||++++.+... +.+....      ...                 +......++      ...
T Consensus         2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~-d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (406)
T TIGR03680         2 QPEVNIGMVGHVDHGKTTLTKALTGVWT-DTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLR   80 (406)
T ss_pred             CceEEEEEEccCCCCHHHHHHHHhCeec-ccCHhHHHcCceeEecccccccccccccCcccccccccccccccccccccc
Confidence            4578999999999999999999975322 1111110      000                 000000011      135


Q ss_pred             EEEEEEcCCCcccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhh
Q psy15714         72 DVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKA  151 (205)
Q Consensus        72 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~  151 (205)
                      .+.+||+||++.|...+...+..+|++++|+|+++........ +.+..+... ...|+++++||+|+......      
T Consensus        81 ~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~-e~l~~l~~~-gi~~iIVvvNK~Dl~~~~~~------  152 (406)
T TIGR03680        81 RVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTK-EHLMALEII-GIKNIVIVQNKIDLVSKEKA------  152 (406)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchH-HHHHHHHHc-CCCeEEEEEEccccCCHHHH------
Confidence            7999999999999887777788899999999998643111112 222333322 23468999999999754311      


Q ss_pred             hccccccHHHHHHHHHHc--CCceEEEcccCCCCCHHHHHHHHHHHHH
Q psy15714        152 AEVDLVSTSQGKKMRRKI--KAAEYLECSAKLNEGLDQVFIAAVRSAV  197 (205)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~i~~~~~~i~~~~~  197 (205)
                          ....++...+.+..  ...+++++||++|+|+++++++|...+.
T Consensus       153 ----~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~  196 (406)
T TIGR03680       153 ----LENYEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP  196 (406)
T ss_pred             ----HHHHHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence                11122333333322  1235999999999999999999987654

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>PRK10218 GTP-binding protein; Provisional

Probab=99.79  E-value=2e-18  Score=143.16  Aligned_cols=160  Identities=14%  Similarity=0.046  Sum_probs=109.7

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhc--CCCCCCCc------------Ccccccc-ceeEEECCEEEEEEEEEcCCCcccccc
Q psy15714         23 ALKVTTVGDGMVGKTCLLITHTE--NKFPTDYV------------PTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERL   87 (205)
Q Consensus        23 ~~ki~v~G~~~~GKstli~~~~~--~~~~~~~~------------~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~   87 (205)
                      --+|+++|+.++|||||+++|..  +.+.....            .+.+..+ .....+....+++.+||+||+..|...
T Consensus         5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~   84 (607)
T PRK10218          5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGE   84 (607)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHHH
Confidence            45899999999999999999986  44433211            1111111 123334455688999999999999988


Q ss_pred             cccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHH
Q psy15714         88 RPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRR  167 (205)
Q Consensus        88 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (205)
                      +..+++.+|++++|+|+.+.......  .++..+...  ++|.++++||+|+...+....           .++...+..
T Consensus        85 v~~~l~~aDg~ILVVDa~~G~~~qt~--~~l~~a~~~--gip~IVviNKiD~~~a~~~~v-----------l~ei~~l~~  149 (607)
T PRK10218         85 VERVMSMVDSVLLVVDAFDGPMPQTR--FVTKKAFAY--GLKPIVVINKVDRPGARPDWV-----------VDQVFDLFV  149 (607)
T ss_pred             HHHHHHhCCEEEEEEecccCccHHHH--HHHHHHHHc--CCCEEEEEECcCCCCCchhHH-----------HHHHHHHHh
Confidence            88899999999999999876444332  344444444  899999999999876543211           112222211


Q ss_pred             -------HcCCceEEEcccCCCC----------CHHHHHHHHHHHHHh
Q psy15714        168 -------KIKAAEYLECSAKLNE----------GLDQVFIAAVRSAVK  198 (205)
Q Consensus       168 -------~~~~~~~~~~Sa~~~~----------~i~~~~~~i~~~~~~  198 (205)
                             ... .|++.+||.+|+          |+..+|+.|++.+..
T Consensus       150 ~l~~~~~~~~-~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~  196 (607)
T PRK10218        150 NLDATDEQLD-FPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPA  196 (607)
T ss_pred             ccCccccccC-CCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCC
Confidence                   122 348999999998          588999888877643

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.79  E-value=2.8e-18  Score=127.94  Aligned_cols=168  Identities=16%  Similarity=0.069  Sum_probs=110.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC--------CCCCC-----cCcc---cccc-ceeEEECCEEEEEEEEEcCCCcccccc
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENK--------FPTDY-----VPTV---FDNY-PDTITVDNKTYDVTLWDTAGQEDYERL   87 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~--------~~~~~-----~~t~---~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~   87 (205)
                      +|+++|..|+|||||+++++...        .....     .+..   +... .....+.....++.+||+||+..|...
T Consensus         1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~   80 (237)
T cd04168           1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE   80 (237)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence            48999999999999999987531        11100     0000   0011 112223334578999999999998887


Q ss_pred             cccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhh---hh---------------
Q psy15714         88 RPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTID---KK---------------  149 (205)
Q Consensus        88 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~---~~---------------  149 (205)
                      ....++.+|++++|+|+++......  ..|...+...  ++|+++++||+|+...+...-   ..               
T Consensus        81 ~~~~l~~aD~~IlVvd~~~g~~~~~--~~~~~~~~~~--~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~~~~~~~p~~  156 (237)
T cd04168          81 VERSLSVLDGAILVISAVEGVQAQT--RILWRLLRKL--NIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIVPMQKVGL  156 (237)
T ss_pred             HHHHHHHhCeEEEEEeCCCCCCHHH--HHHHHHHHHc--CCCEEEEEECccccCCCHHHHHHHHHHHHCCCeEEEECCcE
Confidence            7888999999999999998755432  2566666555  899999999999875322100   00               


Q ss_pred             ---------------------------hhhccccccHHHHH----HHHHHcCCceEEEcccCCCCCHHHHHHHHHHHH
Q psy15714        150 ---------------------------KAAEVDLVSTSQGK----KMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSA  196 (205)
Q Consensus       150 ---------------------------~~~~~~~~~~~~~~----~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~  196 (205)
                                                 +......++.++..    .........|++..||.++.|++.+++.+.+.+
T Consensus       157 ~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~ll~~~~~~~  234 (237)
T cd04168         157 APNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGIGIEELLEGITKLF  234 (237)
T ss_pred             eeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCcCHHHHHHHHHHhc
Confidence                                       11112234434432    222334566788899999999999999998765

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.79  E-value=3.9e-18  Score=141.50  Aligned_cols=169  Identities=19%  Similarity=0.183  Sum_probs=103.2

Q ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCc----CccccccceeEE---ECCEEE----------EEEEEEcCCCc
Q psy15714         20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDYV----PTVFDNYPDTIT---VDNKTY----------DVTLWDTAGQE   82 (205)
Q Consensus        20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~----~t~~~~~~~~~~---~~~~~~----------~~~i~D~~g~~   82 (205)
                      ..+...|+++|.+++|||||++++.+..+.....    ++++..+.....   ..+...          .+.+|||||++
T Consensus         3 ~~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e   82 (586)
T PRK04004          3 KLRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHE   82 (586)
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChH
Confidence            3466789999999999999999998765432222    223322211000   011111          27899999999


Q ss_pred             ccccccccCcCCCcEEEEEEECCC---cchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhh---hhh-----
Q psy15714         83 DYERLRPMSYPNTDCFLLCFSIGS---TSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDK---KKA-----  151 (205)
Q Consensus        83 ~~~~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~---~~~-----  151 (205)
                      .|..++...+..+|++++|+|+++   +.++..+     ..+...  ++|+++++||+|+.........   .+.     
T Consensus        83 ~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i-----~~~~~~--~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~  155 (586)
T PRK04004         83 AFTNLRKRGGALADIAILVVDINEGFQPQTIEAI-----NILKRR--KTPFVVAANKIDRIPGWKSTEDAPFLESIEKQS  155 (586)
T ss_pred             HHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHH-----HHHHHc--CCCEEEEEECcCCchhhhhhcCchHHHHHhhhh
Confidence            999888888899999999999987   3444333     223333  8999999999998532110000   000     


Q ss_pred             -----------------hccccccHHHHHHHHHHcCCceEEEcccCCCCCHHHHHHHHHHH
Q psy15714        152 -----------------AEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRS  195 (205)
Q Consensus       152 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  195 (205)
                                       +....+..+.........+..+++++||.+|+|++++++.+...
T Consensus       156 ~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~  216 (586)
T PRK04004        156 QRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGL  216 (586)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHH
Confidence                             00000000000000011233558999999999999999887643

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.79  E-value=2.4e-18  Score=143.41  Aligned_cols=158  Identities=20%  Similarity=0.142  Sum_probs=103.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC---CCCCC--cCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEE
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENK---FPTDY--VPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFL   99 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~---~~~~~--~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   99 (205)
                      -|.++|..++|||||++++.+..   +.+..  -.|+...+......++  ..+.+||+||++.|.......+..+|+++
T Consensus         2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g--~~i~~IDtPGhe~fi~~m~~g~~~~D~~l   79 (614)
T PRK10512          2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDG--RVLGFIDVPGHEKFLSNMLAGVGGIDHAL   79 (614)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCC--cEEEEEECCCHHHHHHHHHHHhhcCCEEE
Confidence            58899999999999999998633   22111  1111111111111123  34899999999998776666788999999


Q ss_pred             EEEECCCcchHHHHHHHHHHHHhhhCCCCC-EEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCC--ceEEE
Q psy15714        100 LCFSIGSTSSYENILSKWYPELKHHCPKVP-IILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKA--AEYLE  176 (205)
Q Consensus       100 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  176 (205)
                      +|+|+++...-+..  +.+..+...  ++| ++||+||+|+.+....          ....++...+....+.  .++++
T Consensus        80 LVVda~eg~~~qT~--ehl~il~~l--gi~~iIVVlNKiDlv~~~~~----------~~v~~ei~~~l~~~~~~~~~ii~  145 (614)
T PRK10512         80 LVVACDDGVMAQTR--EHLAILQLT--GNPMLTVALTKADRVDEARI----------AEVRRQVKAVLREYGFAEAKLFV  145 (614)
T ss_pred             EEEECCCCCcHHHH--HHHHHHHHc--CCCeEEEEEECCccCCHHHH----------HHHHHHHHHHHHhcCCCCCcEEE
Confidence            99999875332222  333444433  566 5799999999753211          1123445555554442  45999


Q ss_pred             cccCCCCCHHHHHHHHHHHHHh
Q psy15714        177 CSAKLNEGLDQVFIAAVRSAVK  198 (205)
Q Consensus       177 ~Sa~~~~~i~~~~~~i~~~~~~  198 (205)
                      +||++|+|++++++.|.+....
T Consensus       146 VSA~tG~gI~~L~~~L~~~~~~  167 (614)
T PRK10512        146 TAATEGRGIDALREHLLQLPER  167 (614)
T ss_pred             EeCCCCCCCHHHHHHHHHhhcc
Confidence            9999999999999999875443

>KOG0077|consensus

Probab=99.79  E-value=1.3e-19  Score=122.89  Aligned_cols=172  Identities=17%  Similarity=0.240  Sum_probs=122.0

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEE
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLL  100 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~  100 (205)
                      .+.-|++++|..++|||||++.+.++...+ +.||.-.. +....+.|  .+++.+|++||..-+..|..++..+|++|+
T Consensus        18 kK~gKllFlGLDNAGKTTLLHMLKdDrl~q-hvPTlHPT-SE~l~Ig~--m~ftt~DLGGH~qArr~wkdyf~~v~~iv~   93 (193)
T KOG0077|consen   18 KKFGKLLFLGLDNAGKTTLLHMLKDDRLGQ-HVPTLHPT-SEELSIGG--MTFTTFDLGGHLQARRVWKDYFPQVDAIVY   93 (193)
T ss_pred             ccCceEEEEeecCCchhhHHHHHccccccc-cCCCcCCC-hHHheecC--ceEEEEccccHHHHHHHHHHHHhhhceeEe
Confidence            455699999999999999999999988744 34544333 23456777  779999999999999999999999999999


Q ss_pred             EEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCce--EEEc
Q psy15714        101 CFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAE--YLEC  177 (205)
Q Consensus       101 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  177 (205)
                      .+|+-|.+.+.+...++-..+.... .++|+++.+||+|...+....+........+.+--.+.......+..+  .+.|
T Consensus        94 lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfmc  173 (193)
T KOG0077|consen   94 LVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFMC  173 (193)
T ss_pred             eeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccHHHHHHHHHHHHHhcccccccccCCCCCeEEEEEE
Confidence            9999999999998866655554433 699999999999998765333322222211111111111111112222  6889


Q ss_pred             ccCCCCCHHHHHHHHHHHH
Q psy15714        178 SAKLNEGLDQVFIAAVRSA  196 (205)
Q Consensus       178 Sa~~~~~i~~~~~~i~~~~  196 (205)
                      |...+.|..+.|.|+.+.+
T Consensus       174 si~~~~gy~e~fkwl~qyi  192 (193)
T KOG0077|consen  174 SIVRKMGYGEGFKWLSQYI  192 (193)
T ss_pred             EEEccCccceeeeehhhhc
Confidence            9999988888888876643

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.79  E-value=1.1e-17  Score=131.25  Aligned_cols=164  Identities=21%  Similarity=0.192  Sum_probs=121.6

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCC--CCCCCcCccccccceeEEECCEEEEEEEEEcCCCcc----------cccc-
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTENK--FPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQED----------YERL-   87 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~~-   87 (205)
                      ...+||+++|.|++|||||+|++.+.+  +..+...|+.+.....+..+++.  +.++||+|-.+          |... 
T Consensus       176 ~~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~--~~liDTAGiRrk~ki~e~~E~~Sv~r  253 (444)
T COG1160         176 TDPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRK--YVLIDTAGIRRKGKITESVEKYSVAR  253 (444)
T ss_pred             CCceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeE--EEEEECCCCCcccccccceEEEeehh
Confidence            467999999999999999999999864  34566677777777778888865  66679999432          2221 


Q ss_pred             cccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHH
Q psy15714         88 RPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRR  167 (205)
Q Consensus        88 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (205)
                      ....+..+|++++|+|++.+-+-++.  .....+.+.  +.+++||.||+|+...+....        .....+.+....
T Consensus       254 t~~aI~~a~vvllviDa~~~~~~qD~--~ia~~i~~~--g~~~vIvvNKWDl~~~~~~~~--------~~~k~~i~~~l~  321 (444)
T COG1160         254 TLKAIERADVVLLVIDATEGISEQDL--RIAGLIEEA--GRGIVIVVNKWDLVEEDEATM--------EEFKKKLRRKLP  321 (444)
T ss_pred             hHhHHhhcCEEEEEEECCCCchHHHH--HHHHHHHHc--CCCeEEEEEccccCCchhhHH--------HHHHHHHHHHhc
Confidence            12347789999999999988776665  566777766  899999999999877531000        112223344445


Q ss_pred             HcCCceEEEcccCCCCCHHHHHHHHHHHHHh
Q psy15714        168 KIKAAEYLECSAKLNEGLDQVFIAAVRSAVK  198 (205)
Q Consensus       168 ~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  198 (205)
                      ..+..+.+.+||+++.+++++|+.+......
T Consensus       322 ~l~~a~i~~iSA~~~~~i~~l~~~i~~~~~~  352 (444)
T COG1160         322 FLDFAPIVFISALTGQGLDKLFEAIKEIYEC  352 (444)
T ss_pred             cccCCeEEEEEecCCCChHHHHHHHHHHHHH
Confidence            5577779999999999999999998877554

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.79  E-value=6.8e-18  Score=124.78  Aligned_cols=164  Identities=20%  Similarity=0.142  Sum_probs=99.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCcCcc-----------------------ccccc----------------eeEE
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-----------------------FDNYP----------------DTIT   65 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~-----------------------~~~~~----------------~~~~   65 (205)
                      ||+++|+.++|||||+.+|..+.+........                       +....                ..+.
T Consensus         1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   80 (224)
T cd04165           1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE   80 (224)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence            68999999999999999999876643111000                       00000                0011


Q ss_pred             ECCEEEEEEEEEcCCCcccccccccCc--CCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCc
Q psy15714         66 VDNKTYDVTLWDTAGQEDYERLRPMSY--PNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSEN  143 (205)
Q Consensus        66 ~~~~~~~~~i~D~~g~~~~~~~~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~  143 (205)
                      .  ....+.+.|+||+.+|.......+  ..+|++++|+|+.....-..  ..++..+...  ++|+++|+||+|+....
T Consensus        81 ~--~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d--~~~l~~l~~~--~ip~ivvvNK~D~~~~~  154 (224)
T cd04165          81 K--SSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMT--KEHLGLALAL--NIPVFVVVTKIDLAPAN  154 (224)
T ss_pred             e--CCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCEEEEEECccccCHH
Confidence            1  134688899999998865443334  36899999999887654333  2566666655  79999999999986543


Q ss_pred             hhhhhhh----hhcc--------ccccHHHHHHHHHH---cCCceEEEcccCCCCCHHHHHHHHHH
Q psy15714        144 KTIDKKK----AAEV--------DLVSTSQGKKMRRK---IKAAEYLECSAKLNEGLDQVFIAAVR  194 (205)
Q Consensus       144 ~~~~~~~----~~~~--------~~~~~~~~~~~~~~---~~~~~~~~~Sa~~~~~i~~~~~~i~~  194 (205)
                      .......    ....        ...+.+++...+..   ....|++.+||.+|+|++++...|..
T Consensus       155 ~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~  220 (224)
T cd04165         155 ILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL  220 (224)
T ss_pred             HHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence            2111110    0000        00001111111111   12446999999999999999987753

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.79  E-value=1.9e-18  Score=143.45  Aligned_cols=158  Identities=15%  Similarity=0.082  Sum_probs=108.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhc--CCCCCCCcCc------------ccccc-ceeEEECCEEEEEEEEEcCCCcccccccc
Q psy15714         25 KVTTVGDGMVGKTCLLITHTE--NKFPTDYVPT------------VFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRP   89 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~--~~~~~~~~~t------------~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~   89 (205)
                      +|+++|+.++|||||+.+++.  +.+......+            .+... .....+....+++.||||||+.+|.....
T Consensus         3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~   82 (594)
T TIGR01394         3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE   82 (594)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence            689999999999999999985  4443221000            01111 12222333457899999999999988888


Q ss_pred             cCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHH--
Q psy15714         90 MSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRR--  167 (205)
Q Consensus        90 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  167 (205)
                      ..++.+|++++|+|+.+...... . .|+..+...  ++|+++|+||+|+...+..          .+ .++...+..  
T Consensus        83 ~~l~~aD~alLVVDa~~G~~~qT-~-~~l~~a~~~--~ip~IVviNKiD~~~a~~~----------~v-~~ei~~l~~~~  147 (594)
T TIGR01394        83 RVLGMVDGVLLLVDASEGPMPQT-R-FVLKKALEL--GLKPIVVINKIDRPSARPD----------EV-VDEVFDLFAEL  147 (594)
T ss_pred             HHHHhCCEEEEEEeCCCCCcHHH-H-HHHHHHHHC--CCCEEEEEECCCCCCcCHH----------HH-HHHHHHHHHhh
Confidence            88999999999999987543222 2 566666655  8999999999998654321          11 122222221  


Q ss_pred             -----HcCCceEEEcccCCCC----------CHHHHHHHHHHHHHh
Q psy15714        168 -----KIKAAEYLECSAKLNE----------GLDQVFIAAVRSAVK  198 (205)
Q Consensus       168 -----~~~~~~~~~~Sa~~~~----------~i~~~~~~i~~~~~~  198 (205)
                           .... +++.+||++|.          |++.+|+.+++.+..
T Consensus       148 g~~~e~l~~-pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~  192 (594)
T TIGR01394       148 GADDEQLDF-PIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPA  192 (594)
T ss_pred             ccccccccC-cEEechhhcCcccccCcccccCHHHHHHHHHHhCCC
Confidence                 1233 48999999996          799999999887654

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.78  E-value=2.9e-18  Score=125.85  Aligned_cols=152  Identities=14%  Similarity=0.020  Sum_probs=91.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC--CCCCC----------------------cCc-----ccccc-ceeEEECCEEEEEE
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENK--FPTDY----------------------VPT-----VFDNY-PDTITVDNKTYDVT   74 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~--~~~~~----------------------~~t-----~~~~~-~~~~~~~~~~~~~~   74 (205)
                      ||+++|.+++|||||+++++...  .....                      ...     .+... .....+.....++.
T Consensus         1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~   80 (208)
T cd04166           1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI   80 (208)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence            68999999999999999987432  11000                      000     00000 00111222234688


Q ss_pred             EEEcCCCcccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhcc
Q psy15714         75 LWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEV  154 (205)
Q Consensus        75 i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~  154 (205)
                      +|||||+.+|.......+..+|++++|+|+++...-...  .+...+... ...++++|+||+|+........       
T Consensus        81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~--~~~~~~~~~-~~~~iIvviNK~D~~~~~~~~~-------  150 (208)
T cd04166          81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTR--RHSYILSLL-GIRHVVVAVNKMDLVDYSEEVF-------  150 (208)
T ss_pred             EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHH--HHHHHHHHc-CCCcEEEEEEchhcccCCHHHH-------
Confidence            999999988765555578899999999999876432221  222233332 1245788999999864321000       


Q ss_pred             ccccHHHHHHHHHHcCC--ceEEEcccCCCCCHHH
Q psy15714        155 DLVSTSQGKKMRRKIKA--AEYLECSAKLNEGLDQ  187 (205)
Q Consensus       155 ~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~  187 (205)
                       .....+.+.+.+.++.  .+++.+||++|.|+++
T Consensus       151 -~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~  184 (208)
T cd04166         151 -EEIVADYLAFAAKLGIEDITFIPISALDGDNVVS  184 (208)
T ss_pred             -HHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCcc
Confidence             1123345556666664  3489999999999875

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.78  E-value=5.6e-18  Score=123.31  Aligned_cols=173  Identities=14%  Similarity=0.138  Sum_probs=102.8

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccc-ccc-eeEEEC-CEEEEEEEEEcCCCccccc-----ccccCcCC
Q psy15714         23 ALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFD-NYP-DTITVD-NKTYDVTLWDTAGQEDYER-----LRPMSYPN   94 (205)
Q Consensus        23 ~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~-~~~-~~~~~~-~~~~~~~i~D~~g~~~~~~-----~~~~~~~~   94 (205)
                      ++||+++|.+|+|||||+|++.+.........+.+. ... ....+. .....+.+||+||......     +....+..
T Consensus         1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~   80 (197)
T cd04104           1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE   80 (197)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence            479999999999999999999986543322222221 011 011111 1123689999999643211     12334678


Q ss_pred             CcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhh---hccccccHHHHHHHHHH--c
Q psy15714         95 TDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKA---AEVDLVSTSQGKKMRRK--I  169 (205)
Q Consensus        95 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~--~  169 (205)
                      +|+++++.+ .   ++......|+..+...  +.|+++|+||+|+............   .+..+...+........  .
T Consensus        81 ~d~~l~v~~-~---~~~~~d~~~~~~l~~~--~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~  154 (197)
T cd04104          81 YDFFIIISS-T---RFSSNDVKLAKAIQCM--GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAGV  154 (197)
T ss_pred             cCEEEEEeC-C---CCCHHHHHHHHHHHHh--CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcCC
Confidence            899888743 2   2334444677777776  7899999999999543221100000   00000111122222222  2


Q ss_pred             CCceEEEcccC--CCCCHHHHHHHHHHHHHhhcc
Q psy15714        170 KAAEYLECSAK--LNEGLDQVFIAAVRSAVKKQD  201 (205)
Q Consensus       170 ~~~~~~~~Sa~--~~~~i~~~~~~i~~~~~~~~~  201 (205)
                      ...+++.+|+.  .++++..+.+.++..+.+.++
T Consensus       155 ~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~~  188 (197)
T cd04104         155 SEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHKR  188 (197)
T ss_pred             CCCCEEEEeCCChhhcChHHHHHHHHHHhhHHHH
Confidence            34558999999  679999999999998877654

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.78  E-value=2.9e-18  Score=137.37  Aligned_cols=165  Identities=19%  Similarity=0.123  Sum_probs=102.4

Q ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCc------Cccccc-----------------cceeEEEC------CEE
Q psy15714         20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDYV------PTVFDN-----------------YPDTITVD------NKT   70 (205)
Q Consensus        20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~------~t~~~~-----------------~~~~~~~~------~~~   70 (205)
                      ....++|+++|+.++|||||+.++.+... +...      .|....                 +......+      +..
T Consensus         6 ~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~-d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (411)
T PRK04000          6 VQPEVNIGMVGHVDHGKTTLVQALTGVWT-DRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELL   84 (411)
T ss_pred             CCCcEEEEEEccCCCCHHHHHHHhhCeec-ccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccc
Confidence            45679999999999999999999865311 1111      011000                 00000001      113


Q ss_pred             EEEEEEEcCCCcccccccccCcCCCcEEEEEEECCCcc-hHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhh
Q psy15714         71 YDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTS-SYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKK  149 (205)
Q Consensus        71 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~  149 (205)
                      ..+.+||+||++.|..........+|++++|+|+++.. .....  ..+..+... ...|+++|+||+|+.+....    
T Consensus        85 ~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~--~~l~~l~~~-~i~~iiVVlNK~Dl~~~~~~----  157 (411)
T PRK04000         85 RRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTK--EHLMALDII-GIKNIVIVQNKIDLVSKERA----  157 (411)
T ss_pred             cEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHH--HHHHHHHHc-CCCcEEEEEEeeccccchhH----
Confidence            57999999999988765555667789999999999653 22221  122223222 12468999999999754311    


Q ss_pred             hhhccccccHHHHHHHHHHc--CCceEEEcccCCCCCHHHHHHHHHHHHHh
Q psy15714        150 KAAEVDLVSTSQGKKMRRKI--KAAEYLECSAKLNEGLDQVFIAAVRSAVK  198 (205)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  198 (205)
                            ....++...+.+..  ...+++++||++|+|++++++.|.+.+..
T Consensus       158 ------~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~  202 (411)
T PRK04000        158 ------LENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIPT  202 (411)
T ss_pred             ------HHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCCC
Confidence                  11123334444332  22458999999999999999999886643

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.78  E-value=7.3e-18  Score=132.46  Aligned_cols=154  Identities=27%  Similarity=0.273  Sum_probs=113.4

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCC--CCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccc--------ccc
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTENKF--PTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERL--------RPM   90 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~   90 (205)
                      ..-+|++++|.|++|||||+|+|.+..-  ..+...|+.+.....+.++|  +.+.+.||+|-.+....        ...
T Consensus       215 r~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G--~pv~l~DTAGiRet~d~VE~iGIeRs~~  292 (454)
T COG0486         215 REGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNG--IPVRLVDTAGIRETDDVVERIGIERAKK  292 (454)
T ss_pred             hcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECC--EEEEEEecCCcccCccHHHHHHHHHHHH
Confidence            4568999999999999999999998653  46667777777777888899  66888899996543322        123


Q ss_pred             CcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcC
Q psy15714         91 SYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIK  170 (205)
Q Consensus        91 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (205)
                      .+..+|.+++|+|.+.+.+-.+..  .+.   ....+.|+++|.||.||.....              ....    +...
T Consensus       293 ~i~~ADlvL~v~D~~~~~~~~d~~--~~~---~~~~~~~~i~v~NK~DL~~~~~--------------~~~~----~~~~  349 (454)
T COG0486         293 AIEEADLVLFVLDASQPLDKEDLA--LIE---LLPKKKPIIVVLNKADLVSKIE--------------LESE----KLAN  349 (454)
T ss_pred             HHHhCCEEEEEEeCCCCCchhhHH--HHH---hcccCCCEEEEEechhcccccc--------------cchh----hccC
Confidence            578999999999999864333332  222   2335899999999999987531              1111    1112


Q ss_pred             CceEEEcccCCCCCHHHHHHHHHHHHHhh
Q psy15714        171 AAEYLECSAKLNEGLDQVFIAAVRSAVKK  199 (205)
Q Consensus       171 ~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  199 (205)
                      -.+++.+||++++|++.+.+.|.+.+...
T Consensus       350 ~~~~i~iSa~t~~Gl~~L~~~i~~~~~~~  378 (454)
T COG0486         350 GDAIISISAKTGEGLDALREAIKQLFGKG  378 (454)
T ss_pred             CCceEEEEecCccCHHHHHHHHHHHHhhc
Confidence            22489999999999999999999887765

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=99.76  E-value=3.9e-18  Score=125.58  Aligned_cols=168  Identities=18%  Similarity=0.223  Sum_probs=102.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEE-CCEEEEEEEEEcCCCccccc-----ccccCcCCCcE
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITV-DNKTYDVTLWDTAGQEDYER-----LRPMSYPNTDC   97 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~i~D~~g~~~~~~-----~~~~~~~~~~~   97 (205)
                      ||+++|+.++||||+.+.++++..+..+.. .+... .....+ ....+.+.+||+||+..+-.     .....++++.+
T Consensus         1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~-L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~   79 (232)
T PF04670_consen    1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLR-LEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGV   79 (232)
T ss_dssp             EEEEEESTTSSHHHHHHHHHS---GGGGGG------SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESE
T ss_pred             CEEEEcCCCCChhhHHHHHHcCCCchhccc-cCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCE
Confidence            799999999999999998888765443321 12221 111112 12336899999999976433     34567899999


Q ss_pred             EEEEEECCCcchHHHHH--HHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcC--Cce
Q psy15714         98 FLLCFSIGSTSSYENIL--SKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIK--AAE  173 (205)
Q Consensus        98 ~i~v~d~~~~~s~~~~~--~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  173 (205)
                      +|||+|+.+.+-.+++.  ...+..+.++.+++.+-|+++|+|+..+.......      ....+.....+...+  ...
T Consensus        80 LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~------~~~~~~i~~~~~~~~~~~~~  153 (232)
T PF04670_consen   80 LIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIF------RDIQQRIRDELEDLGIEDIT  153 (232)
T ss_dssp             EEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHH------HHHHHHHHHHHHHTT-TSEE
T ss_pred             EEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHH------HHHHHHHHHHhhhccccceE
Confidence            99999998544333332  13445555666999999999999997655433322      112233444444444  233


Q ss_pred             EEEcccCCCCCHHHHHHHHHHHHHhhc
Q psy15714        174 YLECSAKLNEGLDQVFIAAVRSAVKKQ  200 (205)
Q Consensus       174 ~~~~Sa~~~~~i~~~~~~i~~~~~~~~  200 (205)
                      ++.||.-+ +.+-++|..+++.++...
T Consensus       154 ~~~TSI~D-~Sly~A~S~Ivq~LiP~~  179 (232)
T PF04670_consen  154 FFLTSIWD-ESLYEAWSKIVQKLIPNL  179 (232)
T ss_dssp             EEEE-TTS-THHHHHHHHHHHTTSTTH
T ss_pred             EEeccCcC-cHHHHHHHHHHHHHcccH
Confidence            77777776 799999999999877643

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.76  E-value=3.6e-17  Score=118.46  Aligned_cols=150  Identities=17%  Similarity=0.117  Sum_probs=96.3

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCC---------C--CCcCcc---cccc-ceeEEECCEEEEEEEEEcCCCcccccc
Q psy15714         23 ALKVTTVGDGMVGKTCLLITHTENKFP---------T--DYVPTV---FDNY-PDTITVDNKTYDVTLWDTAGQEDYERL   87 (205)
Q Consensus        23 ~~ki~v~G~~~~GKstli~~~~~~~~~---------~--~~~~t~---~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~   87 (205)
                      .++|+++|..++|||||+++++.....         .  ...+..   +... .....+.....++.+.|+||+..|...
T Consensus         2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~   81 (195)
T cd01884           2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN   81 (195)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence            478999999999999999998753100         0  000000   1111 111223333457889999999888766


Q ss_pred             cccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCC-EEEEeeCcccccCchhhhhhhhhccccccHHHHHHHH
Q psy15714         88 RPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVP-IILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMR  166 (205)
Q Consensus        88 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (205)
                      ....+..+|++++|+|+.....-...  .++..+...  ++| +++++||+|+.......         ....++...+.
T Consensus        82 ~~~~~~~~D~~ilVvda~~g~~~~~~--~~~~~~~~~--~~~~iIvviNK~D~~~~~~~~---------~~~~~~i~~~l  148 (195)
T cd01884          82 MITGAAQMDGAILVVSATDGPMPQTR--EHLLLARQV--GVPYIVVFLNKADMVDDEELL---------ELVEMEVRELL  148 (195)
T ss_pred             HHHHhhhCCEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCcEEEEEeCCCCCCcHHHH---------HHHHHHHHHHH
Confidence            66778899999999999875433322  344555554  677 78999999986422100         12234555555


Q ss_pred             HHcCC----ceEEEcccCCCCCH
Q psy15714        167 RKIKA----AEYLECSAKLNEGL  185 (205)
Q Consensus       167 ~~~~~----~~~~~~Sa~~~~~i  185 (205)
                      +..+.    .+++.+||.+|+|+
T Consensus       149 ~~~g~~~~~v~iipiSa~~g~n~  171 (195)
T cd01884         149 SKYGFDGDNTPIVRGSALKALEG  171 (195)
T ss_pred             HHhcccccCCeEEEeeCccccCC
Confidence            55543    56999999999985

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.74  E-value=2.3e-17  Score=121.94  Aligned_cols=154  Identities=11%  Similarity=0.017  Sum_probs=90.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC--CCCC--------------C--------CcCcc-----cccc-ceeEEECCEEEEEE
Q psy15714         25 KVTTVGDGMVGKTCLLITHTEN--KFPT--------------D--------YVPTV-----FDNY-PDTITVDNKTYDVT   74 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~--~~~~--------------~--------~~~t~-----~~~~-~~~~~~~~~~~~~~   74 (205)
                      +|+++|+.++|||||+.+++..  ....              .        ...+.     +... .....+......+.
T Consensus         1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~   80 (219)
T cd01883           1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT   80 (219)
T ss_pred             CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence            4899999999999999888632  1110              0        00000     0000 01122223346799


Q ss_pred             EEEcCCCcccccccccCcCCCcEEEEEEECCCcch------HHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhh
Q psy15714         75 LWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSS------YENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDK  148 (205)
Q Consensus        75 i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s------~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~  148 (205)
                      +||+||+..|.......+..+|++++|+|+++...      .......| ...... ...|+++++||+|+.........
T Consensus        81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~iiivvNK~Dl~~~~~~~~~  158 (219)
T cd01883          81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHA-LLARTL-GVKQLIVAVNKMDDVTVNWSEER  158 (219)
T ss_pred             EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHH-HHHHHc-CCCeEEEEEEccccccccccHHH
Confidence            99999998877666667788999999999988421      11122122 222222 24689999999999742100000


Q ss_pred             hhhhccccccHHHHHHHHHHcCC----ceEEEcccCCCCCHH
Q psy15714        149 KKAAEVDLVSTSQGKKMRRKIKA----AEYLECSAKLNEGLD  186 (205)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~  186 (205)
                      .      ....++.....+..+.    .+++++||++|+|++
T Consensus       159 ~------~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~  194 (219)
T cd01883         159 Y------DEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI  194 (219)
T ss_pred             H------HHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence            0      1112233334444443    459999999999986

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>KOG1489|consensus

Probab=99.73  E-value=1.7e-16  Score=118.71  Aligned_cols=156  Identities=19%  Similarity=0.235  Sum_probs=111.2

Q ss_pred             eeeEEEEECCCCCCHHHHHHHHhcCCC-CCCCcCccccccceeEEECCEEEEEEEEEcCCCccccccc-------ccCcC
Q psy15714         22 KALKVTTVGDGMVGKTCLLITHTENKF-PTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLR-------PMSYP   93 (205)
Q Consensus        22 ~~~ki~v~G~~~~GKstli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~-------~~~~~   93 (205)
                      .-..+.++|.|++|||||++++...+. ...|..|+-....-.+.+++. .++++-|+||-.+--...       =..++
T Consensus       195 siadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf-~q~tVADiPGiI~GAh~nkGlG~~FLrHiE  273 (366)
T KOG1489|consen  195 SIADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDF-SQITVADIPGIIEGAHMNKGLGYKFLRHIE  273 (366)
T ss_pred             eecccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeecccc-ceeEeccCccccccccccCcccHHHHHHHH
Confidence            344578999999999999999998764 244555553333223444432 248888999954322221       12467


Q ss_pred             CCcEEEEEEECCCc---chHHHHHHHHHHHHhhhC---CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHH
Q psy15714         94 NTDCFLLCFSIGST---SSYENILSKWYPELKHHC---PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRR  167 (205)
Q Consensus        94 ~~~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (205)
                      .++.++||+|++..   .-++.+. .+...++.+.   .+.|.++|+||+|+.+..               .+...++++
T Consensus       274 R~~~l~fVvD~s~~~~~~p~~~~~-lL~~ELe~yek~L~~rp~liVaNKiD~~eae---------------~~~l~~L~~  337 (366)
T KOG1489|consen  274 RCKGLLFVVDLSGKQLRNPWQQLQ-LLIEELELYEKGLADRPALIVANKIDLPEAE---------------KNLLSSLAK  337 (366)
T ss_pred             hhceEEEEEECCCcccCCHHHHHH-HHHHHHHHHhhhhccCceEEEEeccCchhHH---------------HHHHHHHHH
Confidence            79999999999988   7777765 5666666655   689999999999986432               122466777


Q ss_pred             HcCCceEEEcccCCCCCHHHHHHHHHH
Q psy15714        168 KIKAAEYLECSAKLNEGLDQVFIAAVR  194 (205)
Q Consensus       168 ~~~~~~~~~~Sa~~~~~i~~~~~~i~~  194 (205)
                      .+...+++++||++++|+.++++.+.+
T Consensus       338 ~lq~~~V~pvsA~~~egl~~ll~~lr~  364 (366)
T KOG1489|consen  338 RLQNPHVVPVSAKSGEGLEELLNGLRE  364 (366)
T ss_pred             HcCCCcEEEeeeccccchHHHHHHHhh
Confidence            777767999999999999999887654

>PRK12736 elongation factor Tu; Reviewed

Probab=99.73  E-value=1.1e-16  Score=127.88  Aligned_cols=165  Identities=13%  Similarity=0.077  Sum_probs=106.5

Q ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCC---------CCcCcc-----cccc-ceeEEECCEEEEEEEEEcCCCccc
Q psy15714         20 VHKALKVTTVGDGMVGKTCLLITHTENKFPT---------DYVPTV-----FDNY-PDTITVDNKTYDVTLWDTAGQEDY   84 (205)
Q Consensus        20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~---------~~~~t~-----~~~~-~~~~~~~~~~~~~~i~D~~g~~~~   84 (205)
                      .+..++|+++|+.++|||||++++++.....         ..+.+.     +... .....+.....++.++|+||+.+|
T Consensus         9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f   88 (394)
T PRK12736          9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY   88 (394)
T ss_pred             CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence            5667999999999999999999998531100         000000     1111 111223333457889999999988


Q ss_pred             ccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCC-EEEEeeCcccccCchhhhhhhhhccccccHHHHH
Q psy15714         85 ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVP-IILVGTKADLRSENKTIDKKKAAEVDLVSTSQGK  163 (205)
Q Consensus        85 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  163 (205)
                      .......+..+|++++|+|+.+...-...  +++..+...  ++| +++++||+|+.+.....         ....++..
T Consensus        89 ~~~~~~~~~~~d~~llVvd~~~g~~~~t~--~~~~~~~~~--g~~~~IvviNK~D~~~~~~~~---------~~i~~~i~  155 (394)
T PRK12736         89 VKNMITGAAQMDGAILVVAATDGPMPQTR--EHILLARQV--GVPYLVVFLNKVDLVDDEELL---------ELVEMEVR  155 (394)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCCchhHH--HHHHHHHHc--CCCEEEEEEEecCCcchHHHH---------HHHHHHHH
Confidence            76666667889999999999875433332  344455544  788 67899999987432110         11223455


Q ss_pred             HHHHHcCC----ceEEEcccCCCC--------CHHHHHHHHHHHHH
Q psy15714        164 KMRRKIKA----AEYLECSAKLNE--------GLDQVFIAAVRSAV  197 (205)
Q Consensus       164 ~~~~~~~~----~~~~~~Sa~~~~--------~i~~~~~~i~~~~~  197 (205)
                      .+.+..+.    .+++.+||.+|.        ++.++++.+.+.+.
T Consensus       156 ~~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp  201 (394)
T PRK12736        156 ELLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP  201 (394)
T ss_pred             HHHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence            55555543    469999999983        57888888776654

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.72  E-value=1.2e-16  Score=117.74  Aligned_cols=112  Identities=14%  Similarity=0.097  Sum_probs=78.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC--CCCCCcC------cc------cccc-c--eeEEEC--------CEEEEEEEEEcC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENK--FPTDYVP------TV------FDNY-P--DTITVD--------NKTYDVTLWDTA   79 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~--~~~~~~~------t~------~~~~-~--~~~~~~--------~~~~~~~i~D~~   79 (205)
                      +|+++|..++|||||+.+|....  +......      ..      +... .  ....+.        +..+.+.+||+|
T Consensus         2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP   81 (222)
T cd01885           2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP   81 (222)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence            68999999999999999987432  1110000      00      0000 0  011122        447889999999


Q ss_pred             CCcccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccc
Q psy15714         80 GQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLR  140 (205)
Q Consensus        80 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  140 (205)
                      |+..|.......++.+|++++|+|+++..+.+..  .++......  ++|+++++||+|+.
T Consensus        82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~--~~l~~~~~~--~~p~ilviNKiD~~  138 (222)
T cd01885          82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTE--TVLRQALKE--RVKPVLVINKIDRL  138 (222)
T ss_pred             CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHH--HHHHHHHHc--CCCEEEEEECCCcc
Confidence            9999998888899999999999999987665543  333333333  78999999999986

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.72  E-value=1.5e-16  Score=126.78  Aligned_cols=165  Identities=22%  Similarity=0.221  Sum_probs=112.0

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEEC-CEEEEEEEEEcCCCcccccccccCcCCCcEE
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVD-NKTYDVTLWDTAGQEDYERLRPMSYPNTDCF   98 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   98 (205)
                      .++.=|+++|+..-|||||+.++...........-+.... -..+..+ +....+.++|||||+.|..++.+-..-+|++
T Consensus         3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIa   82 (509)
T COG0532           3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIA   82 (509)
T ss_pred             CCCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEE
Confidence            3556789999999999999999988776543222221111 1233332 1234688899999999999999999999999


Q ss_pred             EEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHc-CCceEEEc
Q psy15714         99 LLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKI-KAAEYLEC  177 (205)
Q Consensus        99 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  177 (205)
                      |+|++++|.-.-+..  +-+..++..  ++|++|+.||+|....++.....+.... .+       .+..+ +...++++
T Consensus        83 ILVVa~dDGv~pQTi--EAI~hak~a--~vP~iVAiNKiDk~~~np~~v~~el~~~-gl-------~~E~~gg~v~~Vpv  150 (509)
T COG0532          83 ILVVAADDGVMPQTI--EAINHAKAA--GVPIVVAINKIDKPEANPDKVKQELQEY-GL-------VPEEWGGDVIFVPV  150 (509)
T ss_pred             EEEEEccCCcchhHH--HHHHHHHHC--CCCEEEEEecccCCCCCHHHHHHHHHHc-CC-------CHhhcCCceEEEEe
Confidence            999999986443333  233344444  9999999999999866543221111111 11       11122 22448999


Q ss_pred             ccCCCCCHHHHHHHHHHHHH
Q psy15714        178 SAKLNEGLDQVFIAAVRSAV  197 (205)
Q Consensus       178 Sa~~~~~i~~~~~~i~~~~~  197 (205)
                      ||++|+|+++|++.+.-..-
T Consensus       151 SA~tg~Gi~eLL~~ill~ae  170 (509)
T COG0532         151 SAKTGEGIDELLELILLLAE  170 (509)
T ss_pred             eccCCCCHHHHHHHHHHHHH
Confidence            99999999999998776543

>PRK12735 elongation factor Tu; Reviewed

Probab=99.72  E-value=1.7e-16  Score=126.81  Aligned_cols=165  Identities=15%  Similarity=0.086  Sum_probs=105.5

Q ss_pred             ccceeeEEEEECCCCCCHHHHHHHHhcC-------CCC--CCCcCcc---ccccc---eeEEECCEEEEEEEEEcCCCcc
Q psy15714         19 SVHKALKVTTVGDGMVGKTCLLITHTEN-------KFP--TDYVPTV---FDNYP---DTITVDNKTYDVTLWDTAGQED   83 (205)
Q Consensus        19 ~~~~~~ki~v~G~~~~GKstli~~~~~~-------~~~--~~~~~t~---~~~~~---~~~~~~~~~~~~~i~D~~g~~~   83 (205)
                      ..+..++|+++|.+++|||||+++++..       .+.  ...+.+.   ....+   ....+.....++.++|+||+..
T Consensus         8 ~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~   87 (396)
T PRK12735          8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHAD   87 (396)
T ss_pred             CCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHH
Confidence            3466799999999999999999999862       110  0001111   00111   1112223345788999999988


Q ss_pred             cccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEE-EEeeCcccccCchhhhhhhhhccccccHHHH
Q psy15714         84 YERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPII-LVGTKADLRSENKTIDKKKAAEVDLVSTSQG  162 (205)
Q Consensus        84 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  162 (205)
                      |.......+..+|++++|+|+.+.......  +++..+...  ++|.+ +++||+|+......         .....++.
T Consensus        88 f~~~~~~~~~~aD~~llVvda~~g~~~qt~--e~l~~~~~~--gi~~iivvvNK~Dl~~~~~~---------~~~~~~ei  154 (396)
T PRK12735         88 YVKNMITGAAQMDGAILVVSAADGPMPQTR--EHILLARQV--GVPYIVVFLNKCDMVDDEEL---------LELVEMEV  154 (396)
T ss_pred             HHHHHHhhhccCCEEEEEEECCCCCchhHH--HHHHHHHHc--CCCeEEEEEEecCCcchHHH---------HHHHHHHH
Confidence            876666678899999999999875433222  344444444  78866 57999999642210         01223455


Q ss_pred             HHHHHHcCC----ceEEEcccCCCC----------CHHHHHHHHHHHH
Q psy15714        163 KKMRRKIKA----AEYLECSAKLNE----------GLDQVFIAAVRSA  196 (205)
Q Consensus       163 ~~~~~~~~~----~~~~~~Sa~~~~----------~i~~~~~~i~~~~  196 (205)
                      ..+.+..+.    .+++++||.+|+          ++.++++.+.+.+
T Consensus       155 ~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~  202 (396)
T PRK12735        155 RELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYI  202 (396)
T ss_pred             HHHHHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcC
Confidence            666666543    458999999984          6778887777654

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=99.72  E-value=1e-15  Score=114.97  Aligned_cols=162  Identities=21%  Similarity=0.160  Sum_probs=117.1

Q ss_pred             cccccccceeeEEEEECCCCCCHHHHHHHHhcCCC-CCCCcCccccccceeEEECCEEEEEEEEEcCCCcccc-------
Q psy15714         14 DVKSKSVHKALKVTTVGDGMVGKTCLLITHTENKF-PTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYE-------   85 (205)
Q Consensus        14 ~~~~~~~~~~~ki~v~G~~~~GKstli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-------   85 (205)
                      ..-.........++++|+|.+|||||++++++.+. ...|..|+....+-...++|  .++++.|+||--.--       
T Consensus        54 ~gf~V~KsGda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~g--a~IQild~Pgii~gas~g~grG  131 (365)
T COG1163          54 SGFAVKKSGDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKG--AQIQLLDLPGIIEGASSGRGRG  131 (365)
T ss_pred             CcceEeccCCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecC--ceEEEEcCcccccCcccCCCCc
Confidence            44455666778999999999999999999998765 35677787777777888888  668888999842211       


Q ss_pred             cccccCcCCCcEEEEEEECCCcch-HHHHHH-------------------------------------------------
Q psy15714         86 RLRPMSYPNTDCFLLCFSIGSTSS-YENILS-------------------------------------------------  115 (205)
Q Consensus        86 ~~~~~~~~~~~~~i~v~d~~~~~s-~~~~~~-------------------------------------------------  115 (205)
                      ...-...++||++++|.|+....+ .+.+..                                                 
T Consensus       132 ~~vlsv~R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey  211 (365)
T COG1163         132 RQVLSVARNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREY  211 (365)
T ss_pred             ceeeeeeccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHh
Confidence            112346899999999999985543 222211                                                 


Q ss_pred             ----------------HHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEccc
Q psy15714        116 ----------------KWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSA  179 (205)
Q Consensus       116 ----------------~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  179 (205)
                                      .+++.+......+|.++|.||.|+..                 .++...+.+..   ..+.+||
T Consensus       212 ~I~nA~V~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~-----------------~e~~~~l~~~~---~~v~isa  271 (365)
T COG1163         212 RIHNADVLIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPG-----------------LEELERLARKP---NSVPISA  271 (365)
T ss_pred             CcccceEEEecCCcHHHHHHHHhhcceeeeeEEEEecccccC-----------------HHHHHHHHhcc---ceEEEec
Confidence                            33333333334679999999999765                 33444454444   3889999


Q ss_pred             CCCCCHHHHHHHHHHHHH
Q psy15714        180 KLNEGLDQVFIAAVRSAV  197 (205)
Q Consensus       180 ~~~~~i~~~~~~i~~~~~  197 (205)
                      ..+.|++++.+.|.+.+-
T Consensus       272 ~~~~nld~L~e~i~~~L~  289 (365)
T COG1163         272 KKGINLDELKERIWDVLG  289 (365)
T ss_pred             ccCCCHHHHHHHHHHhhC
Confidence            999999999999988753

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.71  E-value=1.9e-16  Score=126.69  Aligned_cols=152  Identities=14%  Similarity=0.083  Sum_probs=97.3

Q ss_pred             ccceeeEEEEECCCCCCHHHHHHHHhcCCC------------CCCCcCc--ccccc-ceeEEECCEEEEEEEEEcCCCcc
Q psy15714         19 SVHKALKVTTVGDGMVGKTCLLITHTENKF------------PTDYVPT--VFDNY-PDTITVDNKTYDVTLWDTAGQED   83 (205)
Q Consensus        19 ~~~~~~ki~v~G~~~~GKstli~~~~~~~~------------~~~~~~t--~~~~~-~~~~~~~~~~~~~~i~D~~g~~~   83 (205)
                      ..++.++|+++|..++|||||+++|+....            .+.....  .+... ...+.+.....++.+||+||+++
T Consensus         8 ~~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~   87 (394)
T TIGR00485         8 RTKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHAD   87 (394)
T ss_pred             CCCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHH
Confidence            356779999999999999999999974210            0000000  01111 11233344456789999999998


Q ss_pred             cccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEE-EEeeCcccccCchhhhhhhhhccccccHHHH
Q psy15714         84 YERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPII-LVGTKADLRSENKTIDKKKAAEVDLVSTSQG  162 (205)
Q Consensus        84 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  162 (205)
                      |.......+..+|++++|+|+.+.......  +.+..+...  ++|.+ +++||+|+.+.....         ....++.
T Consensus        88 f~~~~~~~~~~~D~~ilVvda~~g~~~qt~--e~l~~~~~~--gi~~iIvvvNK~Dl~~~~~~~---------~~~~~~i  154 (394)
T TIGR00485        88 YVKNMITGAAQMDGAILVVSATDGPMPQTR--EHILLARQV--GVPYIVVFLNKCDMVDDEELL---------ELVEMEV  154 (394)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCEEEEEEEecccCCHHHHH---------HHHHHHH
Confidence            876655567788999999999875333322  334444444  78865 689999987532110         1123456


Q ss_pred             HHHHHHcCC----ceEEEcccCCCC
Q psy15714        163 KKMRRKIKA----AEYLECSAKLNE  183 (205)
Q Consensus       163 ~~~~~~~~~----~~~~~~Sa~~~~  183 (205)
                      +.+.+..+.    .+++++||.++.
T Consensus       155 ~~~l~~~~~~~~~~~ii~vSa~~g~  179 (394)
T TIGR00485       155 RELLSEYDFPGDDTPIIRGSALKAL  179 (394)
T ss_pred             HHHHHhcCCCccCccEEECcccccc
Confidence            666666653    459999999875

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.71  E-value=1.6e-16  Score=130.00  Aligned_cols=155  Identities=17%  Similarity=0.154  Sum_probs=113.7

Q ss_pred             eeeEEEEECCCCCCHHHHHHHHhcCCC-CCCCcCccccccceeEEECCEEEEEEEEEcCCCccccc------ccccC-c-
Q psy15714         22 KALKVTTVGDGMVGKTCLLITHTENKF-PTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYER------LRPMS-Y-   92 (205)
Q Consensus        22 ~~~ki~v~G~~~~GKstli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~-~-   92 (205)
                      +..+|+++|+|++|||||+|++++... ..+.+..+.+..+-.....+..  +++.|+||-.....      ..+.+ + 
T Consensus         2 ~~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~--i~ivDLPG~YSL~~~S~DE~Var~~ll~   79 (653)
T COG0370           2 KKLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHE--IEIVDLPGTYSLTAYSEDEKVARDFLLE   79 (653)
T ss_pred             CcceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCce--EEEEeCCCcCCCCCCCchHHHHHHHHhc
Confidence            346799999999999999999998654 4555555554444455566654  77889999543322      22233 3 


Q ss_pred             CCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCc
Q psy15714         93 PNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAA  172 (205)
Q Consensus        93 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (205)
                      ...|++|-|.|+++.+.--.    +--++.+.  +.|++++.|++|....             .-..-+.+.+.+.++++
T Consensus        80 ~~~D~ivnVvDAtnLeRnLy----ltlQLlE~--g~p~ilaLNm~D~A~~-------------~Gi~ID~~~L~~~LGvP  140 (653)
T COG0370          80 GKPDLIVNVVDATNLERNLY----LTLQLLEL--GIPMILALNMIDEAKK-------------RGIRIDIEKLSKLLGVP  140 (653)
T ss_pred             CCCCEEEEEcccchHHHHHH----HHHHHHHc--CCCeEEEeccHhhHHh-------------cCCcccHHHHHHHhCCC
Confidence            45799999999998765333    33344455  8999999999998875             33445567788888998


Q ss_pred             eEEEcccCCCCCHHHHHHHHHHHHHh
Q psy15714        173 EYLECSAKLNEGLDQVFIAAVRSAVK  198 (205)
Q Consensus       173 ~~~~~Sa~~~~~i~~~~~~i~~~~~~  198 (205)
                       ++++||++|.|++++.+.+++....
T Consensus       141 -Vv~tvA~~g~G~~~l~~~i~~~~~~  165 (653)
T COG0370         141 -VVPTVAKRGEGLEELKRAIIELAES  165 (653)
T ss_pred             -EEEEEeecCCCHHHHHHHHHHhccc
Confidence             9999999999999999988865443

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.70  E-value=6.6e-16  Score=109.32  Aligned_cols=163  Identities=17%  Similarity=0.156  Sum_probs=107.5

Q ss_pred             ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccce-eEEECCEEEEEEEEEcCC----------Ccccccc
Q psy15714         19 SVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPD-TITVDNKTYDVTLWDTAG----------QEDYERL   87 (205)
Q Consensus        19 ~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~D~~g----------~~~~~~~   87 (205)
                      ......-|+++|.+++|||||||++++.+--.....|.|..... -+.+++.   +.+.|.||          .+.+..+
T Consensus        20 P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~   96 (200)
T COG0218          20 PEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKL   96 (200)
T ss_pred             CCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHH
Confidence            34466789999999999999999999977444445555555532 3344442   77789999          3334444


Q ss_pred             cccCcC---CCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHH-
Q psy15714         88 RPMSYP---NTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGK-  163 (205)
Q Consensus        88 ~~~~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-  163 (205)
                      ...|++   +..++++++|+-..-...+.  +.+..+.+.  ++|++|++||+|.........          ...... 
T Consensus        97 i~~YL~~R~~L~~vvlliD~r~~~~~~D~--em~~~l~~~--~i~~~vv~tK~DKi~~~~~~k----------~l~~v~~  162 (200)
T COG0218          97 IEEYLEKRANLKGVVLLIDARHPPKDLDR--EMIEFLLEL--GIPVIVVLTKADKLKKSERNK----------QLNKVAE  162 (200)
T ss_pred             HHHHHhhchhheEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCeEEEEEccccCChhHHHH----------HHHHHHH
Confidence            344443   36788888998766554443  566777776  999999999999876531100          011111 


Q ss_pred             HHHHHcCCce-EEEcccCCCCCHHHHHHHHHHHHHh
Q psy15714        164 KMRRKIKAAE-YLECSAKLNEGLDQVFIAAVRSAVK  198 (205)
Q Consensus       164 ~~~~~~~~~~-~~~~Sa~~~~~i~~~~~~i~~~~~~  198 (205)
                      .+.......+ ++..|+.++.|++++...|.+.+..
T Consensus       163 ~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~  198 (200)
T COG0218         163 ELKKPPPDDQWVVLFSSLKKKGIDELKAKILEWLKE  198 (200)
T ss_pred             HhcCCCCccceEEEEecccccCHHHHHHHHHHHhhc
Confidence            2221122111 6789999999999999998887654

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.70  E-value=8e-18  Score=118.92  Aligned_cols=121  Identities=18%  Similarity=0.191  Sum_probs=77.0

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCccccccccc---CcCCCcEEE
Q psy15714         23 ALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPM---SYPNTDCFL   99 (205)
Q Consensus        23 ~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~---~~~~~~~~i   99 (205)
                      .-.|+++|++|+|||+|+.+|..++..+...+. .......+ -......+.+.|+|||.+.+.....   +...+.++|
T Consensus         3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n~~~~~-~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~II   80 (181)
T PF09439_consen    3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-ENNIAYNV-NNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGII   80 (181)
T ss_dssp             --EEEEE-STTSSHHHHHHHHHHSS---B---S-SEEEECCG-SSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEE
T ss_pred             CceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cCCceEEe-ecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEE
Confidence            346899999999999999999999765543333 22211111 1123346888899999998875433   378899999


Q ss_pred             EEEECCC-cchHHHHHHHHHHHHhhhC---CCCCEEEEeeCcccccCchh
Q psy15714        100 LCFSIGS-TSSYENILSKWYPELKHHC---PKVPIILVGTKADLRSENKT  145 (205)
Q Consensus       100 ~v~d~~~-~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~  145 (205)
                      ||+|.+. ...+.+..+++++.+....   ..+|++|+.||+|+....+.
T Consensus        81 fvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~~  130 (181)
T PF09439_consen   81 FVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKPP  130 (181)
T ss_dssp             EEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---H
T ss_pred             EEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCCH
Confidence            9999874 4566666667777775543   68999999999999876543

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.70  E-value=6e-16  Score=117.85  Aligned_cols=114  Identities=20%  Similarity=0.170  Sum_probs=76.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCc-----Ccc-----------cccc-ceeEEECCEEEEEEEEEcCCCcccccc
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENKFPTDYV-----PTV-----------FDNY-PDTITVDNKTYDVTLWDTAGQEDYERL   87 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~~~~~~~-----~t~-----------~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~   87 (205)
                      +|+++|.+|+|||||++++....-.....     .+.           +... .....+....+.+.+||+||+..+...
T Consensus         1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~   80 (268)
T cd04170           1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE   80 (268)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence            48999999999999999987532110000     000           0000 011112223367899999999888777


Q ss_pred             cccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccC
Q psy15714         88 RPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSE  142 (205)
Q Consensus        88 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  142 (205)
                      ....+..+|++++|+|+++........ .| ..+...  ++|.++++||+|+...
T Consensus        81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~~-~~-~~~~~~--~~p~iivvNK~D~~~~  131 (268)
T cd04170          81 TRAALRAADAALVVVSAQSGVEVGTEK-LW-EFADEA--GIPRIIFINKMDRERA  131 (268)
T ss_pred             HHHHHHHCCEEEEEEeCCCCCCHHHHH-HH-HHHHHc--CCCEEEEEECCccCCC
Confidence            777889999999999999876554332 33 334444  7999999999998654

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>cd01850 CDC_Septin CDC/Septin

Probab=99.69  E-value=9.5e-16  Score=116.74  Aligned_cols=143  Identities=17%  Similarity=0.138  Sum_probs=87.6

Q ss_pred             eeeEEEEECCCCCCHHHHHHHHhcCCCCCC----------CcCccccc-cceeEEECCEEEEEEEEEcCCCccc------
Q psy15714         22 KALKVTTVGDGMVGKTCLLITHTENKFPTD----------YVPTVFDN-YPDTITVDNKTYDVTLWDTAGQEDY------   84 (205)
Q Consensus        22 ~~~ki~v~G~~~~GKstli~~~~~~~~~~~----------~~~t~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~------   84 (205)
                      ..++|+|+|.+|+|||||++++++..+...          ..+|.... ....+..+|..+++.+|||||-...      
T Consensus         3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~   82 (276)
T cd01850           3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC   82 (276)
T ss_pred             cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence            468999999999999999999998876543          22222221 1234556788889999999993221      


Q ss_pred             --------------------ccccccCcCC--CcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccC
Q psy15714         85 --------------------ERLRPMSYPN--TDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSE  142 (205)
Q Consensus        85 --------------------~~~~~~~~~~--~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  142 (205)
                                          ...+...+..  +++++|+++.+.. .+......++..+.   ..+|+++|+||+|+...
T Consensus        83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~-~l~~~D~~~lk~l~---~~v~vi~VinK~D~l~~  158 (276)
T cd01850          83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGH-GLKPLDIEFMKRLS---KRVNIIPVIAKADTLTP  158 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCC-CCCHHHHHHHHHHh---ccCCEEEEEECCCcCCH
Confidence                                1112133443  5666666665542 22222113444444   37999999999999653


Q ss_pred             chhhhhhhhhccccccHHHHHHHHHHcCCceEEEccc
Q psy15714        143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSA  179 (205)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  179 (205)
                      ...          ....+..++.+...++. ++....
T Consensus       159 ~e~----------~~~k~~i~~~l~~~~i~-~~~~~~  184 (276)
T cd01850         159 EEL----------KEFKQRIMEDIEEHNIK-IYKFPE  184 (276)
T ss_pred             HHH----------HHHHHHHHHHHHHcCCc-eECCCC
Confidence            321          22344556666666665 555443

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>COG3596 Predicted GTPase [General function prediction only]

Probab=99.68  E-value=2e-16  Score=116.53  Aligned_cols=177  Identities=16%  Similarity=0.163  Sum_probs=116.8

Q ss_pred             cccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc--ceeEEECCEEEEEEEEEcCCCcc-------ccccc
Q psy15714         18 KSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY--PDTITVDNKTYDVTLWDTAGQED-------YERLR   88 (205)
Q Consensus        18 ~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~~i~D~~g~~~-------~~~~~   88 (205)
                      ......++|+++|..|+|||||||+++++...+-..-..+.+.  .....+++  -.+.|||+||-.+       |+...
T Consensus        34 l~~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~--~~l~lwDtPG~gdg~~~D~~~r~~~  111 (296)
T COG3596          34 LTEKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG--ENLVLWDTPGLGDGKDKDAEHRQLY  111 (296)
T ss_pred             hcccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc--cceEEecCCCcccchhhhHHHHHHH
Confidence            3456789999999999999999999997665432211111111  12233445  3599999999543       77777


Q ss_pred             ccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhh---hhhhhccccccHHHHHHH
Q psy15714         89 PMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTID---KKKAAEVDLVSTSQGKKM  165 (205)
Q Consensus        89 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~---~~~~~~~~~~~~~~~~~~  165 (205)
                      ..+++..|.++++.++.|+.--.+.. +|.+.+.. .-+.++++++|.+|.......+.   .......++...+.++..
T Consensus       112 ~d~l~~~DLvL~l~~~~draL~~d~~-f~~dVi~~-~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~  189 (296)
T COG3596         112 RDYLPKLDLVLWLIKADDRALGTDED-FLRDVIIL-GLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEAL  189 (296)
T ss_pred             HHHhhhccEEEEeccCCCccccCCHH-HHHHHHHh-ccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHH
Confidence            78899999999999999986443433 45444433 33699999999999876531111   111111223333344443


Q ss_pred             HHHc-CCceEEEcccCCCCCHHHHHHHHHHHHHh
Q psy15714        166 RRKI-KAAEYLECSAKLNEGLDQVFIAAVRSAVK  198 (205)
Q Consensus       166 ~~~~-~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  198 (205)
                      .+.. ...|++..|...++|++++...++..+-.
T Consensus       190 ~~~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp~  223 (296)
T COG3596         190 GRLFQEVKPVVAVSGRLPWGLKELVRALITALPV  223 (296)
T ss_pred             HHHHhhcCCeEEeccccCccHHHHHHHHHHhCcc
Confidence            3333 35568888899999999999999987654

>CHL00071 tufA elongation factor Tu

Probab=99.68  E-value=1e-15  Score=122.87  Aligned_cols=153  Identities=16%  Similarity=0.115  Sum_probs=97.5

Q ss_pred             ccceeeEEEEECCCCCCHHHHHHHHhcCCCCC---------CCcCccc---cccc---eeEEECCEEEEEEEEEcCCCcc
Q psy15714         19 SVHKALKVTTVGDGMVGKTCLLITHTENKFPT---------DYVPTVF---DNYP---DTITVDNKTYDVTLWDTAGQED   83 (205)
Q Consensus        19 ~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~---------~~~~t~~---~~~~---~~~~~~~~~~~~~i~D~~g~~~   83 (205)
                      ..+..++|+++|.+++|||||+++++...-..         ..+.+..   ...+   ....+.....++.+.|+||+..
T Consensus         8 ~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~   87 (409)
T CHL00071          8 RKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHAD   87 (409)
T ss_pred             CCCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHH
Confidence            35667999999999999999999998642100         0000000   0000   1112223335678899999988


Q ss_pred             cccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCC-EEEEeeCcccccCchhhhhhhhhccccccHHHH
Q psy15714         84 YERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVP-IILVGTKADLRSENKTIDKKKAAEVDLVSTSQG  162 (205)
Q Consensus        84 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  162 (205)
                      |-......+..+|++++|+|+.....-...  +.+..+...  ++| +++++||+|+.+.....         ....++.
T Consensus        88 ~~~~~~~~~~~~D~~ilVvda~~g~~~qt~--~~~~~~~~~--g~~~iIvvvNK~D~~~~~~~~---------~~~~~~l  154 (409)
T CHL00071         88 YVKNMITGAAQMDGAILVVSAADGPMPQTK--EHILLAKQV--GVPNIVVFLNKEDQVDDEELL---------ELVELEV  154 (409)
T ss_pred             HHHHHHHHHHhCCEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCEEEEEEEccCCCCHHHHH---------HHHHHHH
Confidence            766666678899999999999865433222  344455544  788 77899999997532110         1123455


Q ss_pred             HHHHHHcCC----ceEEEcccCCCCC
Q psy15714        163 KKMRRKIKA----AEYLECSAKLNEG  184 (205)
Q Consensus       163 ~~~~~~~~~----~~~~~~Sa~~~~~  184 (205)
                      ..+.+..+.    .+++.+||.+|++
T Consensus       155 ~~~l~~~~~~~~~~~ii~~Sa~~g~n  180 (409)
T CHL00071        155 RELLSKYDFPGDDIPIVSGSALLALE  180 (409)
T ss_pred             HHHHHHhCCCCCcceEEEcchhhccc
Confidence            555555543    5699999999874

>cd04169 RF3 RF3 subfamily

Probab=99.68  E-value=8.3e-16  Score=116.54  Aligned_cols=115  Identities=15%  Similarity=0.189  Sum_probs=78.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC--CCCCC-C------cCcccccc------------ceeEEECCEEEEEEEEEcCCCcc
Q psy15714         25 KVTTVGDGMVGKTCLLITHTEN--KFPTD-Y------VPTVFDNY------------PDTITVDNKTYDVTLWDTAGQED   83 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~--~~~~~-~------~~t~~~~~------------~~~~~~~~~~~~~~i~D~~g~~~   83 (205)
                      +|+++|++|+|||||+++++..  ..... .      ..+...++            .....+....+++.+||+||+.+
T Consensus         4 ni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~d   83 (267)
T cd04169           4 TFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHED   83 (267)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCchH
Confidence            6999999999999999998742  21110 0      00000000            11223444557899999999998


Q ss_pred             cccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCc
Q psy15714         84 YERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSEN  143 (205)
Q Consensus        84 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~  143 (205)
                      |.......++.+|++|+|+|+++......  ..+.......  ++|+++++||+|+....
T Consensus        84 f~~~~~~~l~~aD~~IlVvda~~g~~~~~--~~i~~~~~~~--~~P~iivvNK~D~~~a~  139 (267)
T cd04169          84 FSEDTYRTLTAVDSAVMVIDAAKGVEPQT--RKLFEVCRLR--GIPIITFINKLDREGRD  139 (267)
T ss_pred             HHHHHHHHHHHCCEEEEEEECCCCccHHH--HHHHHHHHhc--CCCEEEEEECCccCCCC
Confidence            87766667889999999999987643222  2444444444  89999999999986543

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.68  E-value=1.4e-15  Score=114.58  Aligned_cols=160  Identities=22%  Similarity=0.177  Sum_probs=108.2

Q ss_pred             eeeEEEEECCCCCCHHHHHHHHhcCCC-CCCCcCccccccceeEEECCEEEEEEEEEcCCCcc--ccccc-------ccC
Q psy15714         22 KALKVTTVGDGMVGKTCLLITHTENKF-PTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQED--YERLR-------PMS   91 (205)
Q Consensus        22 ~~~ki~v~G~~~~GKstli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~--~~~~~-------~~~   91 (205)
                      ....|+|.|.|++|||||+++++..+. ...|+.|+.......+..++  ..++++||||--+  ....+       -..
T Consensus       167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~--~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL  244 (346)
T COG1084         167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGY--LRIQVIDTPGLLDRPLEERNEIERQAILAL  244 (346)
T ss_pred             CCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCC--ceEEEecCCcccCCChHHhcHHHHHHHHHH
Confidence            446899999999999999999998765 35566665444333333344  5788999999321  11111       112


Q ss_pred             cCCCcEEEEEEECCCc--chHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHc
Q psy15714         92 YPNTDCFLLCFSIGST--SSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKI  169 (205)
Q Consensus        92 ~~~~~~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (205)
                      -.-.++++|++|.+..  -+.+... .++..++.... .|+++|.||+|..+..            .  .+++.......
T Consensus       245 ~hl~~~IlF~~D~Se~cgy~lE~Q~-~L~~eIk~~f~-~p~v~V~nK~D~~~~e------------~--~~~~~~~~~~~  308 (346)
T COG1084         245 RHLAGVILFLFDPSETCGYSLEEQI-SLLEEIKELFK-APIVVVINKIDIADEE------------K--LEEIEASVLEE  308 (346)
T ss_pred             HHhcCeEEEEEcCccccCCCHHHHH-HHHHHHHHhcC-CCeEEEEecccccchh------------H--HHHHHHHHHhh
Confidence            2347899999999865  3566665 56677766664 9999999999987643            2  22333334444


Q ss_pred             CCceEEEcccCCCCCHHHHHHHHHHHHHhh
Q psy15714        170 KAAEYLECSAKLNEGLDQVFIAAVRSAVKK  199 (205)
Q Consensus       170 ~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  199 (205)
                      +......+++..+.+++.+-..+...+.+.
T Consensus       309 ~~~~~~~~~~~~~~~~d~~~~~v~~~a~~~  338 (346)
T COG1084         309 GGEEPLKISATKGCGLDKLREEVRKTALEP  338 (346)
T ss_pred             ccccccceeeeehhhHHHHHHHHHHHhhch
Confidence            444467889999999998888887776554

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.67  E-value=1.6e-15  Score=124.51  Aligned_cols=119  Identities=16%  Similarity=0.151  Sum_probs=80.2

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhc--CCCCC---------------CCcCcc---cccc-ceeEEECCEEEEEEEEEcC
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTE--NKFPT---------------DYVPTV---FDNY-PDTITVDNKTYDVTLWDTA   79 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~--~~~~~---------------~~~~t~---~~~~-~~~~~~~~~~~~~~i~D~~   79 (205)
                      .+.-+|+++|++++|||||+++++.  +....               .+.+..   +..+ .....+....+++.+||||
T Consensus         8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP   87 (526)
T PRK00741          8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP   87 (526)
T ss_pred             hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence            3456999999999999999999863  22110               000000   1111 1112233344779999999


Q ss_pred             CCcccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCc
Q psy15714         80 GQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSEN  143 (205)
Q Consensus        80 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~  143 (205)
                      |+..|.......++.+|++|+|+|+++......  ..++......  ++|+++++||+|+....
T Consensus        88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t--~~l~~~~~~~--~iPiiv~iNK~D~~~a~  147 (526)
T PRK00741         88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQT--RKLMEVCRLR--DTPIFTFINKLDRDGRE  147 (526)
T ss_pred             CchhhHHHHHHHHHHCCEEEEEEecCCCCCHHH--HHHHHHHHhc--CCCEEEEEECCcccccC
Confidence            999988766667899999999999987643322  2444555444  89999999999987544

>PRK13351 elongation factor G; Reviewed

Probab=99.67  E-value=8.7e-16  Score=130.80  Aligned_cols=118  Identities=16%  Similarity=0.140  Sum_probs=82.2

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCC--CC------C-----CCcCc---ccccc-ceeEEECCEEEEEEEEEcCCCcc
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTENK--FP------T-----DYVPT---VFDNY-PDTITVDNKTYDVTLWDTAGQED   83 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~~--~~------~-----~~~~t---~~~~~-~~~~~~~~~~~~~~i~D~~g~~~   83 (205)
                      ....+|+|+|..++|||||++++....  ..      .     .+.+.   .+... .....+......+.+||+||+.+
T Consensus         6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~d   85 (687)
T PRK13351          6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHID   85 (687)
T ss_pred             ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHH
Confidence            345799999999999999999998521  10      0     00000   00001 11112223347899999999999


Q ss_pred             cccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccC
Q psy15714         84 YERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSE  142 (205)
Q Consensus        84 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  142 (205)
                      |......+++.+|++++|+|+++..+..... .| ..+...  ++|+++++||+|+...
T Consensus        86 f~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~-~~-~~~~~~--~~p~iiviNK~D~~~~  140 (687)
T PRK13351         86 FTGEVERSLRVLDGAVVVFDAVTGVQPQTET-VW-RQADRY--GIPRLIFINKMDRVGA  140 (687)
T ss_pred             HHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-HH-HHHHhc--CCCEEEEEECCCCCCC
Confidence            8888888899999999999999877665542 34 444444  8999999999998765

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=99.66  E-value=4.9e-15  Score=112.17  Aligned_cols=162  Identities=22%  Similarity=0.169  Sum_probs=109.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCC-CCCCcCccccccceeEEECCEEEEEEEEEcCCCcccc----cc---cccCcCCC
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTENKF-PTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYE----RL---RPMSYPNT   95 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~----~~---~~~~~~~~   95 (205)
                      .-|.++|.|++|||||++++..-+. ...|..|+-...--.+.+++ .-.|.+-|+||-.+--    -+   +=..++.+
T Consensus       160 ADVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~-~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt  238 (369)
T COG0536         160 ADVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDG-GESFVVADIPGLIEGASEGVGLGLRFLRHIERT  238 (369)
T ss_pred             cccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecC-CCcEEEecCcccccccccCCCccHHHHHHHHhh
Confidence            3466899999999999999997654 35667766555443444422 2358888999954321    11   11236678


Q ss_pred             cEEEEEEECCCcch---HHHHHHHHHHHHhhhC---CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHc
Q psy15714         96 DCFLLCFSIGSTSS---YENILSKWYPELKHHC---PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKI  169 (205)
Q Consensus        96 ~~~i~v~d~~~~~s---~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (205)
                      .+++.|+|++..+.   .++.. .+...+..+.   .+.|.+||+||+|+....            .........+.+..
T Consensus       239 ~vL~hviD~s~~~~~dp~~~~~-~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~------------e~~~~~~~~l~~~~  305 (369)
T COG0536         239 RVLLHVIDLSPIDGRDPIEDYQ-TIRNELEKYSPKLAEKPRIVVLNKIDLPLDE------------EELEELKKALAEAL  305 (369)
T ss_pred             heeEEEEecCcccCCCHHHHHH-HHHHHHHHhhHHhccCceEEEEeccCCCcCH------------HHHHHHHHHHHHhc
Confidence            99999999986543   55554 6677777776   689999999999965443            22222334444444


Q ss_pred             CCceEEEcccCCCCCHHHHHHHHHHHHHhh
Q psy15714        170 KAAEYLECSAKLNEGLDQVFIAAVRSAVKK  199 (205)
Q Consensus       170 ~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  199 (205)
                      +....+.+||.+++|++++...+.+.+...
T Consensus       306 ~~~~~~~ISa~t~~g~~~L~~~~~~~l~~~  335 (369)
T COG0536         306 GWEVFYLISALTREGLDELLRALAELLEET  335 (369)
T ss_pred             CCCcceeeehhcccCHHHHHHHHHHHHHHh
Confidence            444233399999999999999988877654

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.65  E-value=2.2e-15  Score=114.30  Aligned_cols=114  Identities=16%  Similarity=0.084  Sum_probs=76.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhc--CCCCC-----------CCcCcc---cccc-ceeEEECCEEEEEEEEEcCCCcccccc
Q psy15714         25 KVTTVGDGMVGKTCLLITHTE--NKFPT-----------DYVPTV---FDNY-PDTITVDNKTYDVTLWDTAGQEDYERL   87 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~--~~~~~-----------~~~~t~---~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~   87 (205)
                      +|+++|.+++|||||++++..  +....           .+.+..   +... .....+.....++.+|||||+..+...
T Consensus         1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~   80 (270)
T cd01886           1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE   80 (270)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence            489999999999999999873  21110           000000   0000 011111123367899999999888777


Q ss_pred             cccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccC
Q psy15714         88 RPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSE  142 (205)
Q Consensus        88 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  142 (205)
                      +...++.+|++++|+|+.+...-...  .++..+...  ++|+++++||+|+...
T Consensus        81 ~~~~l~~aD~ailVVDa~~g~~~~t~--~~~~~~~~~--~~p~ivviNK~D~~~a  131 (270)
T cd01886          81 VERSLRVLDGAVAVFDAVAGVEPQTE--TVWRQADRY--NVPRIAFVNKMDRTGA  131 (270)
T ss_pred             HHHHHHHcCEEEEEEECCCCCCHHHH--HHHHHHHHc--CCCEEEEEECCCCCCC
Confidence            77889999999999999876543332  344445554  7999999999998753

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>KOG0090|consensus

Probab=99.65  E-value=7.7e-16  Score=109.06  Aligned_cols=167  Identities=19%  Similarity=0.188  Sum_probs=108.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcC---CCcEEEE
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYP---NTDCFLL  100 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~---~~~~~i~  100 (205)
                      -.|+++|+.++|||+|+-++..+.+...+.+-....  -...+++.  ..++.|.|||.+.+.....++.   .+-++||
T Consensus        39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSiepn~--a~~r~gs~--~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVF  114 (238)
T KOG0090|consen   39 NAVLLVGLSDSGKTSLFTQLITGSHRGTVTSIEPNE--ATYRLGSE--NVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVF  114 (238)
T ss_pred             CcEEEEecCCCCceeeeeehhcCCccCeeeeeccce--eeEeecCc--ceEEEeCCCcHHHHHHHHHHccccccceeEEE
Confidence            479999999999999999999886644333322221  12223332  2788899999998876555555   7899999


Q ss_pred             EEECCC-cchHHHHHHHHHHHHhhh---CCCCCEEEEeeCcccccCchhhhhhhhhcc------------ccccHH----
Q psy15714        101 CFSIGS-TSSYENILSKWYPELKHH---CPKVPIILVGTKADLRSENKTIDKKKAAEV------------DLVSTS----  160 (205)
Q Consensus       101 v~d~~~-~~s~~~~~~~~~~~~~~~---~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~------------~~~~~~----  160 (205)
                      |+|... .....++.+++++.+...   .+.+|++++.||.|+....+....+..+..            +.++.+    
T Consensus       115 VVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~~  194 (238)
T KOG0090|consen  115 VVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIAK  194 (238)
T ss_pred             EEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhccccccccc
Confidence            998663 345566666777777665   268999999999999766543322211110            011111    


Q ss_pred             ------HHH--HHHHHc-CCceEEEcccCCCCCHHHHHHHHHHH
Q psy15714        161 ------QGK--KMRRKI-KAAEYLECSAKLNEGLDQVFIAAVRS  195 (205)
Q Consensus       161 ------~~~--~~~~~~-~~~~~~~~Sa~~~~~i~~~~~~i~~~  195 (205)
                            ++.  +|+.-. .-..+.++|++++ +++++-+|+.+.
T Consensus       195 ~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~  237 (238)
T KOG0090|consen  195 DFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA  237 (238)
T ss_pred             cccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence                  111  121111 1224889999999 999999998764

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.65  E-value=1.2e-15  Score=124.27  Aligned_cols=159  Identities=13%  Similarity=0.044  Sum_probs=94.7

Q ss_pred             ccceeeEEEEECCCCCCHHHHHHHHhcC--CCCCCC----------cCcc-----------------ccccce---eEEE
Q psy15714         19 SVHKALKVTTVGDGMVGKTCLLITHTEN--KFPTDY----------VPTV-----------------FDNYPD---TITV   66 (205)
Q Consensus        19 ~~~~~~ki~v~G~~~~GKstli~~~~~~--~~~~~~----------~~t~-----------------~~~~~~---~~~~   66 (205)
                      ..+..++|+++|..++|||||+.+++..  .+....          ..+.                 ....+.   ...+
T Consensus        23 ~~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~  102 (474)
T PRK05124         23 QHKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYF  102 (474)
T ss_pred             cccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEe
Confidence            4577799999999999999999988743  111100          0000                 000011   1112


Q ss_pred             CCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhh
Q psy15714         67 DNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTI  146 (205)
Q Consensus        67 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~  146 (205)
                      .....++.++|+||+..|.......+..+|++++|+|+.....-...  +....+... ...|+++++||+|+...+...
T Consensus       103 ~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~--~~~~l~~~l-g~~~iIvvvNKiD~~~~~~~~  179 (474)
T PRK05124        103 STEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTR--RHSFIATLL-GIKHLVVAVNKMDLVDYSEEV  179 (474)
T ss_pred             ccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccch--HHHHHHHHh-CCCceEEEEEeeccccchhHH
Confidence            23345788999999988865545557999999999999765322111  111222222 124789999999987432100


Q ss_pred             hhhhhhccccccHHHHHHHHHHcC---CceEEEcccCCCCCHHHH
Q psy15714        147 DKKKAAEVDLVSTSQGKKMRRKIK---AAEYLECSAKLNEGLDQV  188 (205)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~Sa~~~~~i~~~  188 (205)
                      .        ....++...+.+..+   ..+++++||++|+|++++
T Consensus       180 ~--------~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~  216 (474)
T PRK05124        180 F--------ERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ  216 (474)
T ss_pred             H--------HHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence            0        011122333333333   345999999999999764

>PRK00049 elongation factor Tu; Reviewed

Probab=99.64  E-value=7.2e-15  Score=117.50  Aligned_cols=164  Identities=16%  Similarity=0.118  Sum_probs=103.3

Q ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCC------CC-----cCcc---cccc-ceeEEECCEEEEEEEEEcCCCccc
Q psy15714         20 VHKALKVTTVGDGMVGKTCLLITHTENKFPT------DY-----VPTV---FDNY-PDTITVDNKTYDVTLWDTAGQEDY   84 (205)
Q Consensus        20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~------~~-----~~t~---~~~~-~~~~~~~~~~~~~~i~D~~g~~~~   84 (205)
                      .+..++|+++|..++|||||+++++......      .+     .+..   +... .....+.....++.+.|+||+.+|
T Consensus         9 ~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f   88 (396)
T PRK00049          9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADY   88 (396)
T ss_pred             CCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHH
Confidence            4677999999999999999999998631100      00     0000   0000 111222223456788999999888


Q ss_pred             ccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEE-EEeeCcccccCchhhhhhhhhccccccHHHHH
Q psy15714         85 ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPII-LVGTKADLRSENKTIDKKKAAEVDLVSTSQGK  163 (205)
Q Consensus        85 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  163 (205)
                      .......+..+|++++|+|+.+...-...  .++..+...  ++|.+ +++||+|+.......         .....+..
T Consensus        89 ~~~~~~~~~~aD~~llVVDa~~g~~~qt~--~~~~~~~~~--g~p~iiVvvNK~D~~~~~~~~---------~~~~~~i~  155 (396)
T PRK00049         89 VKNMITGAAQMDGAILVVSAADGPMPQTR--EHILLARQV--GVPYIVVFLNKCDMVDDEELL---------ELVEMEVR  155 (396)
T ss_pred             HHHHHhhhccCCEEEEEEECCCCCchHHH--HHHHHHHHc--CCCEEEEEEeecCCcchHHHH---------HHHHHHHH
Confidence            76666678899999999999875433322  444555555  78976 689999986422100         11223444


Q ss_pred             HHHHHcCC----ceEEEcccCCCC----------CHHHHHHHHHHHH
Q psy15714        164 KMRRKIKA----AEYLECSAKLNE----------GLDQVFIAAVRSA  196 (205)
Q Consensus       164 ~~~~~~~~----~~~~~~Sa~~~~----------~i~~~~~~i~~~~  196 (205)
                      .+....+.    .+++.+||.++.          ++.++++.|.+.+
T Consensus       156 ~~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~  202 (396)
T PRK00049        156 ELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYI  202 (396)
T ss_pred             HHHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcC
Confidence            44444432    458999999875          5677777776643

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.64  E-value=2.3e-15  Score=120.70  Aligned_cols=153  Identities=13%  Similarity=0.035  Sum_probs=92.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcC--CCCC-------------CC-----------cCcc---ccccce---eEEECCEEE
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTEN--KFPT-------------DY-----------VPTV---FDNYPD---TITVDNKTY   71 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~--~~~~-------------~~-----------~~t~---~~~~~~---~~~~~~~~~   71 (205)
                      +||+++|+.++|||||+.+++..  ....             ..           +...   ....+.   ...+.....
T Consensus         1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~   80 (406)
T TIGR02034         1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR   80 (406)
T ss_pred             CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence            58999999999999999988632  1111             00           0000   000000   111222345


Q ss_pred             EEEEEEcCCCcccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhh
Q psy15714         72 DVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKA  151 (205)
Q Consensus        72 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~  151 (205)
                      ++.++|+||+++|-......+..+|++++|+|+.....-+..  +.+..+... ...++++++||+|+.......-    
T Consensus        81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~--~~~~~~~~~-~~~~iivviNK~D~~~~~~~~~----  153 (406)
T TIGR02034        81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTR--RHSYIASLL-GIRHVVLAVNKMDLVDYDEEVF----  153 (406)
T ss_pred             EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccH--HHHHHHHHc-CCCcEEEEEEecccccchHHHH----
Confidence            789999999998866555678899999999999865432221  122223332 1346889999999875321000    


Q ss_pred             hccccccHHHHHHHHHHcCC--ceEEEcccCCCCCHHH
Q psy15714        152 AEVDLVSTSQGKKMRRKIKA--AEYLECSAKLNEGLDQ  187 (205)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~  187 (205)
                          ....++...+.+..+.  .+++++||.+|+|+++
T Consensus       154 ----~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~  187 (406)
T TIGR02034       154 ----ENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS  187 (406)
T ss_pred             ----HHHHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence                1112333344444443  3589999999999875

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>COG2262 HflX GTPases [General function prediction only]

Probab=99.63  E-value=9.8e-15  Score=113.18  Aligned_cols=160  Identities=23%  Similarity=0.170  Sum_probs=112.8

Q ss_pred             ccceeeEEEEECCCCCCHHHHHHHHhcCCC-CCCCcCccccccceeEEECCEEEEEEEEEcCCCc---------cccccc
Q psy15714         19 SVHKALKVTTVGDGMVGKTCLLITHTENKF-PTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQE---------DYERLR   88 (205)
Q Consensus        19 ~~~~~~ki~v~G~~~~GKstli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~---------~~~~~~   88 (205)
                      ....-..|.++|-.++|||||+|++++... ..+..+++-+.....+.+.+ ...+.+-||-|-.         .|+++.
T Consensus       188 ~~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTL  266 (411)
T COG2262         188 SRSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTL  266 (411)
T ss_pred             cccCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHHH
Confidence            345667899999999999999999997543 34445555555555666653 2356677999933         244444


Q ss_pred             ccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHH
Q psy15714         89 PMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRR  167 (205)
Q Consensus        89 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (205)
                      . ....+|+++.|+|++++.....+. .....+.... ...|+++|.||+|+....            .    .......
T Consensus       267 E-E~~~aDlllhVVDaSdp~~~~~~~-~v~~vL~el~~~~~p~i~v~NKiD~~~~~------------~----~~~~~~~  328 (411)
T COG2262         267 E-EVKEADLLLHVVDASDPEILEKLE-AVEDVLAEIGADEIPIILVLNKIDLLEDE------------E----ILAELER  328 (411)
T ss_pred             H-HhhcCCEEEEEeecCChhHHHHHH-HHHHHHHHcCCCCCCEEEEEecccccCch------------h----hhhhhhh
Confidence            3 356899999999999996555554 5666676654 579999999999976542            1    1111111


Q ss_pred             HcCCceEEEcccCCCCCHHHHHHHHHHHHHhh
Q psy15714        168 KIKAAEYLECSAKLNEGLDQVFIAAVRSAVKK  199 (205)
Q Consensus       168 ~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  199 (205)
                      ..+  ..+.+||++|+|++.+++.|...+...
T Consensus       329 ~~~--~~v~iSA~~~~gl~~L~~~i~~~l~~~  358 (411)
T COG2262         329 GSP--NPVFISAKTGEGLDLLRERIIELLSGL  358 (411)
T ss_pred             cCC--CeEEEEeccCcCHHHHHHHHHHHhhhc
Confidence            112  379999999999999999998887643

>TIGR00503 prfC peptide chain release factor 3

Probab=99.63  E-value=9.3e-15  Score=120.13  Aligned_cols=117  Identities=17%  Similarity=0.123  Sum_probs=78.9

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhc--CCCCCC-Cc-------Ccc----------cccc-ceeEEECCEEEEEEEEEcC
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTE--NKFPTD-YV-------PTV----------FDNY-PDTITVDNKTYDVTLWDTA   79 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~--~~~~~~-~~-------~t~----------~~~~-~~~~~~~~~~~~~~i~D~~   79 (205)
                      .+.-+|+++|.+++|||||+++++.  +..... ..       .+.          +..+ .....++...+++.+||||
T Consensus         9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP   88 (527)
T TIGR00503         9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP   88 (527)
T ss_pred             ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence            4556999999999999999999752  222100 00       011          1111 1123344556889999999


Q ss_pred             CCcccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCccccc
Q psy15714         80 GQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS  141 (205)
Q Consensus        80 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  141 (205)
                      |+..|.......++.+|++|+|+|+++...  .....+.......  ++|+++++||+|+..
T Consensus        89 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~--~~t~~l~~~~~~~--~~PiivviNKiD~~~  146 (527)
T TIGR00503        89 GHEDFSEDTYRTLTAVDNCLMVIDAAKGVE--TRTRKLMEVTRLR--DTPIFTFMNKLDRDI  146 (527)
T ss_pred             ChhhHHHHHHHHHHhCCEEEEEEECCCCCC--HHHHHHHHHHHhc--CCCEEEEEECccccC
Confidence            998887755567889999999999987532  2222454555443  899999999999864

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=99.62  E-value=7.6e-15  Score=118.71  Aligned_cols=159  Identities=11%  Similarity=0.058  Sum_probs=97.8

Q ss_pred             cceeeEEEEECCCCCCHHHHHHHHhc--CCCCCC------------------------CcCcc-ccccc---eeEEECCE
Q psy15714         20 VHKALKVTTVGDGMVGKTCLLITHTE--NKFPTD------------------------YVPTV-FDNYP---DTITVDNK   69 (205)
Q Consensus        20 ~~~~~ki~v~G~~~~GKstli~~~~~--~~~~~~------------------------~~~t~-~~~~~---~~~~~~~~   69 (205)
                      .+..++|+++|+.++|||||+.+++.  +.....                        ..+.. ....+   ....+...
T Consensus         4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~   83 (446)
T PTZ00141          4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP   83 (446)
T ss_pred             CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC
Confidence            35678999999999999999998875  221110                        00000 00001   01112334


Q ss_pred             EEEEEEEEcCCCcccccccccCcCCCcEEEEEEECCCcch---H---HHHHHHHHHHHhhhCCCCC-EEEEeeCcccccC
Q psy15714         70 TYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSS---Y---ENILSKWYPELKHHCPKVP-IILVGTKADLRSE  142 (205)
Q Consensus        70 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~  142 (205)
                      ...+.|+|+|||.+|.......+..+|++++|+|+.+..-   +   .... +.+..+...  ++| ++|++||+|....
T Consensus        84 ~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~-eh~~~~~~~--gi~~iiv~vNKmD~~~~  160 (446)
T PTZ00141         84 KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTR-EHALLAFTL--GVKQMIVCINKMDDKTV  160 (446)
T ss_pred             CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHH-HHHHHHHHc--CCCeEEEEEEccccccc
Confidence            5678999999999998777778899999999999986531   0   1122 233344444  777 6799999995421


Q ss_pred             chhhhhhhhhccccccHHHHHHHHHHcCC----ceEEEcccCCCCCHHH
Q psy15714        143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKA----AEYLECSAKLNEGLDQ  187 (205)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~  187 (205)
                      .......      ....++...+....+.    .+++.+||.+|+|+.+
T Consensus       161 ~~~~~~~------~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~  203 (446)
T PTZ00141        161 NYSQERY------DEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE  203 (446)
T ss_pred             hhhHHHH------HHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence            1000000      1223344444444443    5599999999999864

>PLN03126 Elongation factor Tu; Provisional

Probab=99.62  E-value=8.6e-15  Score=118.91  Aligned_cols=153  Identities=16%  Similarity=0.145  Sum_probs=98.0

Q ss_pred             ccceeeEEEEECCCCCCHHHHHHHHhcCC------CCCCC---cCccccc---cc---eeEEECCEEEEEEEEEcCCCcc
Q psy15714         19 SVHKALKVTTVGDGMVGKTCLLITHTENK------FPTDY---VPTVFDN---YP---DTITVDNKTYDVTLWDTAGQED   83 (205)
Q Consensus        19 ~~~~~~ki~v~G~~~~GKstli~~~~~~~------~~~~~---~~t~~~~---~~---~~~~~~~~~~~~~i~D~~g~~~   83 (205)
                      ..+..++|+++|..++|||||+++|+...      ....+   +.+....   .+   ....+......+.++|+||+.+
T Consensus        77 ~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~  156 (478)
T PLN03126         77 RKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHAD  156 (478)
T ss_pred             ccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHH
Confidence            45678999999999999999999998521      11110   0001000   00   0111222345789999999999


Q ss_pred             cccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCC-EEEEeeCcccccCchhhhhhhhhccccccHHHH
Q psy15714         84 YERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVP-IILVGTKADLRSENKTIDKKKAAEVDLVSTSQG  162 (205)
Q Consensus        84 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  162 (205)
                      |-......+..+|++++|+|+.+.......  +++..+...  ++| +++++||+|+.+.....         ....++.
T Consensus       157 f~~~~~~g~~~aD~ailVVda~~G~~~qt~--e~~~~~~~~--gi~~iIvvvNK~Dl~~~~~~~---------~~i~~~i  223 (478)
T PLN03126        157 YVKNMITGAAQMDGAILVVSGADGPMPQTK--EHILLAKQV--GVPNMVVFLNKQDQVDDEELL---------ELVELEV  223 (478)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCeEEEEEecccccCHHHHH---------HHHHHHH
Confidence            877666677899999999999876543332  455555555  788 77899999986532110         1122345


Q ss_pred             HHHHHHcC----CceEEEcccCCCCC
Q psy15714        163 KKMRRKIK----AAEYLECSAKLNEG  184 (205)
Q Consensus       163 ~~~~~~~~----~~~~~~~Sa~~~~~  184 (205)
                      ..+.+..+    ..+++.+||.++++
T Consensus       224 ~~~l~~~g~~~~~~~~vp~Sa~~g~n  249 (478)
T PLN03126        224 RELLSSYEFPGDDIPIISGSALLALE  249 (478)
T ss_pred             HHHHHhcCCCcCcceEEEEEcccccc
Confidence            55555542    34589999988753

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.62  E-value=1.5e-14  Score=111.76  Aligned_cols=80  Identities=20%  Similarity=0.246  Sum_probs=53.6

Q ss_pred             EEEECCCCCCHHHHHHHHhcCCCC-CCCcC-----cccccccee----------------EEECC-EEEEEEEEEcCCC-
Q psy15714         26 VTTVGDGMVGKTCLLITHTENKFP-TDYVP-----TVFDNYPDT----------------ITVDN-KTYDVTLWDTAGQ-   81 (205)
Q Consensus        26 i~v~G~~~~GKstli~~~~~~~~~-~~~~~-----t~~~~~~~~----------------~~~~~-~~~~~~i~D~~g~-   81 (205)
                      |+++|.|++|||||++++++..+. .+++.     +.+..+...                ...++ ..+.+++||+||. 
T Consensus         1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv   80 (318)
T cd01899           1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV   80 (318)
T ss_pred             CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence            579999999999999999987653 22222     222111100                01223 3367999999997 


Q ss_pred             ---ccccccccc---CcCCCcEEEEEEECC
Q psy15714         82 ---EDYERLRPM---SYPNTDCFLLCFSIG  105 (205)
Q Consensus        82 ---~~~~~~~~~---~~~~~~~~i~v~d~~  105 (205)
                         +.++.+...   .++++|++++|+|+.
T Consensus        81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~  110 (318)
T cd01899          81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS  110 (318)
T ss_pred             CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence               445544344   389999999999997

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.62  E-value=8e-15  Score=97.75  Aligned_cols=104  Identities=28%  Similarity=0.343  Sum_probs=68.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCC--CCCcCccccccceeEEECCEEEEEEEEEcCCCcc----------cccccccCc
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENKFP--TDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQED----------YERLRPMSY   92 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~~~~~~~   92 (205)
                      ||+|+|.+|+|||||++++++....  ....+++.......+.+++..  +.++|+||-..          +....+ .+
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~~~vDtpG~~~~~~~~~~~~~~~~~~~-~~   77 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKK--FILVDTPGINDGESQDNDGKEIRKFLE-QI   77 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEE--EEEEESSSCSSSSHHHHHHHHHHHHHH-HH
T ss_pred             CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceee--EEEEeCCCCcccchhhHHHHHHHHHHH-HH
Confidence            6999999999999999999985431  222222222222344566644  56999999532          112233 34


Q ss_pred             CCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeC
Q psy15714         93 PNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTK  136 (205)
Q Consensus        93 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK  136 (205)
                      ..+|++++|+|++++.. +... .++..++   .+.|+++|+||
T Consensus        78 ~~~d~ii~vv~~~~~~~-~~~~-~~~~~l~---~~~~~i~v~NK  116 (116)
T PF01926_consen   78 SKSDLIIYVVDASNPIT-EDDK-NILRELK---NKKPIILVLNK  116 (116)
T ss_dssp             CTESEEEEEEETTSHSH-HHHH-HHHHHHH---TTSEEEEEEES
T ss_pred             HHCCEEEEEEECCCCCC-HHHH-HHHHHHh---cCCCEEEEEcC
Confidence            88999999999877322 2222 4555554   48999999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>TIGR00484 EF-G translation elongation factor EF-G

Probab=99.62  E-value=3.4e-14  Score=121.00  Aligned_cols=115  Identities=13%  Similarity=0.007  Sum_probs=79.2

Q ss_pred             eeeEEEEECCCCCCHHHHHHHHhc--CCCCC---CCcC-cc----------cccc---ceeEEECCEEEEEEEEEcCCCc
Q psy15714         22 KALKVTTVGDGMVGKTCLLITHTE--NKFPT---DYVP-TV----------FDNY---PDTITVDNKTYDVTLWDTAGQE   82 (205)
Q Consensus        22 ~~~ki~v~G~~~~GKstli~~~~~--~~~~~---~~~~-t~----------~~~~---~~~~~~~~~~~~~~i~D~~g~~   82 (205)
                      +--+|+|+|.+++|||||++++..  +....   .... +.          +...   ...+..+  ..++.+|||||+.
T Consensus         9 ~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~--~~~i~liDTPG~~   86 (689)
T TIGR00484         9 RFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWK--GHRINIIDTPGHV   86 (689)
T ss_pred             cccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEEC--CeEEEEEECCCCc
Confidence            345899999999999999999974  21100   0000 00          1111   1122233  3679999999998


Q ss_pred             ccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccC
Q psy15714         83 DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSE  142 (205)
Q Consensus        83 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  142 (205)
                      ++.......++.+|++++|+|+.+.......  .++..+...  ++|+++++||+|+...
T Consensus        87 ~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~--~~~~~~~~~--~~p~ivviNK~D~~~~  142 (689)
T TIGR00484        87 DFTVEVERSLRVLDGAVAVLDAVGGVQPQSE--TVWRQANRY--EVPRIAFVNKMDKTGA  142 (689)
T ss_pred             chhHHHHHHHHHhCEEEEEEeCCCCCChhHH--HHHHHHHHc--CCCEEEEEECCCCCCC
Confidence            8877777789999999999999987655543  344445444  7999999999998754

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>KOG0462|consensus

Probab=99.62  E-value=1.1e-14  Score=116.13  Aligned_cols=162  Identities=19%  Similarity=0.141  Sum_probs=113.4

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCC-CCCCCcCcc------------cccc----ceeEEECCEEEEEEEEEcCCCcc
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTENK-FPTDYVPTV------------FDNY----PDTITVDNKTYDVTLWDTAGQED   83 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~~-~~~~~~~t~------------~~~~----~~~~~~~~~~~~~~i~D~~g~~~   83 (205)
                      .+-=++.|+..-.-|||||..+++.-. +.+...+..            +...    ......+++.+.+.++|||||-+
T Consensus        58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD  137 (650)
T KOG0462|consen   58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD  137 (650)
T ss_pred             hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence            455578999999999999998887421 111101100            1111    01222347779999999999999


Q ss_pred             cccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHH
Q psy15714         84 YERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGK  163 (205)
Q Consensus        84 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  163 (205)
                      |..--.+.+..|+++++|+|++..-..+.+...|+. ++   .+.-+|.|+||+|++..++.           ....+..
T Consensus       138 Fs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lA-fe---~~L~iIpVlNKIDlp~adpe-----------~V~~q~~  202 (650)
T KOG0462|consen  138 FSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLA-FE---AGLAIIPVLNKIDLPSADPE-----------RVENQLF  202 (650)
T ss_pred             ccceehehhhhcCceEEEEEcCcCchHHHHHHHHHH-HH---cCCeEEEeeeccCCCCCCHH-----------HHHHHHH
Confidence            998888889999999999999988777776533322 22   27899999999999987642           2223333


Q ss_pred             HHHHHcCCceEEEcccCCCCCHHHHHHHHHHHHHh
Q psy15714        164 KMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVK  198 (205)
Q Consensus       164 ~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  198 (205)
                      ++-..... +++.+||++|.|++++|+.|++.+..
T Consensus       203 ~lF~~~~~-~~i~vSAK~G~~v~~lL~AII~rVPp  236 (650)
T KOG0462|consen  203 ELFDIPPA-EVIYVSAKTGLNVEELLEAIIRRVPP  236 (650)
T ss_pred             HHhcCCcc-ceEEEEeccCccHHHHHHHHHhhCCC
Confidence            33322233 38999999999999999999988654

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.61  E-value=5e-15  Score=119.70  Aligned_cols=158  Identities=11%  Similarity=0.081  Sum_probs=100.2

Q ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcC--CCCCC----------------------CcCcccc---ccce---eEEECCE
Q psy15714         20 VHKALKVTTVGDGMVGKTCLLITHTEN--KFPTD----------------------YVPTVFD---NYPD---TITVDNK   69 (205)
Q Consensus        20 ~~~~~ki~v~G~~~~GKstli~~~~~~--~~~~~----------------------~~~t~~~---~~~~---~~~~~~~   69 (205)
                      .+..++|+++|+.++|||||+.+++..  .....                      .+.....   ..+.   ...+...
T Consensus         4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~   83 (447)
T PLN00043          4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT   83 (447)
T ss_pred             CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC
Confidence            356689999999999999999887631  11100                      0000000   0010   1112334


Q ss_pred             EEEEEEEEcCCCcccccccccCcCCCcEEEEEEECCCcchHH-------HHHHHHHHHHhhhCCCCC-EEEEeeCccccc
Q psy15714         70 TYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYE-------NILSKWYPELKHHCPKVP-IILVGTKADLRS  141 (205)
Q Consensus        70 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~-------~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~  141 (205)
                      ...++++|+|||.+|.......+..+|++|+|+|+++. .++       ... +.+..+...  ++| ++|++||+|+..
T Consensus        84 ~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~-eh~~~~~~~--gi~~iIV~vNKmD~~~  159 (447)
T PLN00043         84 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTR-EHALLAFTL--GVKQMICCCNKMDATT  159 (447)
T ss_pred             CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHH-HHHHHHHHc--CCCcEEEEEEcccCCc
Confidence            56789999999999998888889999999999999873 221       222 233333333  675 788999999862


Q ss_pred             CchhhhhhhhhccccccHHHHHHHHHHcCC----ceEEEcccCCCCCHHH
Q psy15714        142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKA----AEYLECSAKLNEGLDQ  187 (205)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~  187 (205)
                      .......      .....++.+.+.+..+.    .+++++||.+|+|+.+
T Consensus       160 ~~~~~~~------~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~  203 (447)
T PLN00043        160 PKYSKAR------YDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE  203 (447)
T ss_pred             hhhhHHH------HHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence            2110000      01234567777777663    4599999999999853

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=99.61  E-value=7.7e-15  Score=118.45  Aligned_cols=166  Identities=16%  Similarity=0.121  Sum_probs=102.5

Q ss_pred             ccceeeEEEEECCCCCCHHHHHHHHhcCCC---CCCCc--Cc--cccccce-----------eE-EEC------------
Q psy15714         19 SVHKALKVTTVGDGMVGKTCLLITHTENKF---PTDYV--PT--VFDNYPD-----------TI-TVD------------   67 (205)
Q Consensus        19 ~~~~~~ki~v~G~~~~GKstli~~~~~~~~---~~~~~--~t--~~~~~~~-----------~~-~~~------------   67 (205)
                      .....++|.++|+-..|||||+.+|++-..   .+...  -|  .+.....           .+ ...            
T Consensus        30 ~~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (460)
T PTZ00327         30 SRQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGC  109 (460)
T ss_pred             cCCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccc
Confidence            446778999999999999999999996322   11000  00  0000000           00 000            


Q ss_pred             C----EEEEEEEEEcCCCcccccccccCcCCCcEEEEEEECCCc-chHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccC
Q psy15714         68 N----KTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGST-SSYENILSKWYPELKHHCPKVPIILVGTKADLRSE  142 (205)
Q Consensus        68 ~----~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  142 (205)
                      +    ....+.+.|+||++.|-......+..+|++++|+|+.+. ...+..  +.+..+... .-.|+++|+||+|+.+.
T Consensus       110 ~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~--ehl~i~~~l-gi~~iIVvlNKiDlv~~  186 (460)
T PTZ00327        110 GHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTS--EHLAAVEIM-KLKHIIILQNKIDLVKE  186 (460)
T ss_pred             cccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhH--HHHHHHHHc-CCCcEEEEEecccccCH
Confidence            0    023688999999999877666678899999999999874 222221  223333333 12468999999998753


Q ss_pred             chhhhhhhhhccccccHHHHHHHHHH--cCCceEEEcccCCCCCHHHHHHHHHHHHH
Q psy15714        143 NKTIDKKKAAEVDLVSTSQGKKMRRK--IKAAEYLECSAKLNEGLDQVFIAAVRSAV  197 (205)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~  197 (205)
                      ...          ....++.+.+.+.  ....+++++||++|+|+++|++.|.+.+.
T Consensus       187 ~~~----------~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp  233 (460)
T PTZ00327        187 AQA----------QDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIP  233 (460)
T ss_pred             HHH----------HHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCC
Confidence            211          1112233333322  13345999999999999999999986544

>PLN03127 Elongation factor Tu; Provisional

Probab=99.61  E-value=3.1e-14  Score=115.05  Aligned_cols=166  Identities=14%  Similarity=0.102  Sum_probs=101.2

Q ss_pred             cccceeeEEEEECCCCCCHHHHHHHHhcC------CCCCCC---c--Ccc---cccc-ceeEEECCEEEEEEEEEcCCCc
Q psy15714         18 KSVHKALKVTTVGDGMVGKTCLLITHTEN------KFPTDY---V--PTV---FDNY-PDTITVDNKTYDVTLWDTAGQE   82 (205)
Q Consensus        18 ~~~~~~~ki~v~G~~~~GKstli~~~~~~------~~~~~~---~--~t~---~~~~-~~~~~~~~~~~~~~i~D~~g~~   82 (205)
                      ...+..++|+++|..++|||||++++.+.      .....+   +  +..   +... .....+.....++.+.|+||+.
T Consensus        56 ~~~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~  135 (447)
T PLN03127         56 TRTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHA  135 (447)
T ss_pred             hcCCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCcc
Confidence            34567899999999999999999998632      100000   0  000   0111 1122233334578899999998


Q ss_pred             ccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCC-EEEEeeCcccccCchhhhhhhhhccccccHHH
Q psy15714         83 DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVP-IILVGTKADLRSENKTIDKKKAAEVDLVSTSQ  161 (205)
Q Consensus        83 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~  161 (205)
                      +|-......+..+|++++|+|+.+...-+..  +.+..+...  ++| +++++||+|+.+.....         ....++
T Consensus       136 ~f~~~~~~g~~~aD~allVVda~~g~~~qt~--e~l~~~~~~--gip~iIvviNKiDlv~~~~~~---------~~i~~~  202 (447)
T PLN03127        136 DYVKNMITGAAQMDGGILVVSAPDGPMPQTK--EHILLARQV--GVPSLVVFLNKVDVVDDEELL---------ELVEME  202 (447)
T ss_pred             chHHHHHHHHhhCCEEEEEEECCCCCchhHH--HHHHHHHHc--CCCeEEEEEEeeccCCHHHHH---------HHHHHH
Confidence            8766555566789999999999875433321  444555555  789 57899999987532110         111223


Q ss_pred             HHHHHHHcC----CceEEEcccC---CCCC-------HHHHHHHHHHHH
Q psy15714        162 GKKMRRKIK----AAEYLECSAK---LNEG-------LDQVFIAAVRSA  196 (205)
Q Consensus       162 ~~~~~~~~~----~~~~~~~Sa~---~~~~-------i~~~~~~i~~~~  196 (205)
                      ...+....+    ..+++.+||.   ++.|       +.++++.+.+.+
T Consensus       203 i~~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~l  251 (447)
T PLN03127        203 LRELLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYI  251 (447)
T ss_pred             HHHHHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhC
Confidence            344444332    2458888876   4444       677887777654

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.59  E-value=1.7e-14  Score=121.85  Aligned_cols=158  Identities=15%  Similarity=0.060  Sum_probs=94.7

Q ss_pred             ccceeeEEEEECCCCCCHHHHHHHHhcCC--CCCC----------CcCcc-------------c----cccce---eEEE
Q psy15714         19 SVHKALKVTTVGDGMVGKTCLLITHTENK--FPTD----------YVPTV-------------F----DNYPD---TITV   66 (205)
Q Consensus        19 ~~~~~~ki~v~G~~~~GKstli~~~~~~~--~~~~----------~~~t~-------------~----~~~~~---~~~~   66 (205)
                      .....++|+++|.+++|||||+++++...  ....          ...++             .    ...+.   ...+
T Consensus        20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~   99 (632)
T PRK05506         20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF   99 (632)
T ss_pred             cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE
Confidence            44566899999999999999999988532  1110          00000             0    00000   0112


Q ss_pred             CCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhh
Q psy15714         67 DNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTI  146 (205)
Q Consensus        67 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~  146 (205)
                      .....++.++|+||++.|.......+..+|++++|+|+.....-+..  +....+... ...|++|++||+|+.......
T Consensus       100 ~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~--e~~~~~~~~-~~~~iivvvNK~D~~~~~~~~  176 (632)
T PRK05506        100 ATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTR--RHSFIASLL-GIRHVVLAVNKMDLVDYDQEV  176 (632)
T ss_pred             ccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCH--HHHHHHHHh-CCCeEEEEEEecccccchhHH
Confidence            22234688999999988765555568899999999999765432221  222223322 135788999999986422100


Q ss_pred             hhhhhhccccccHHHHHHHHHHcCC--ceEEEcccCCCCCHHH
Q psy15714        147 DKKKAAEVDLVSTSQGKKMRRKIKA--AEYLECSAKLNEGLDQ  187 (205)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~  187 (205)
                      .        .....+...+.+..+.  .+++++||++|+|+++
T Consensus       177 ~--------~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~  211 (632)
T PRK05506        177 F--------DEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT  211 (632)
T ss_pred             H--------HHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence            0        0112334444445443  3489999999999874

>KOG1145|consensus

Probab=99.57  E-value=4.7e-14  Score=112.52  Aligned_cols=164  Identities=21%  Similarity=0.202  Sum_probs=109.9

Q ss_pred             ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEE-CCEEEEEEEEEcCCCcccccccccCcCCCc
Q psy15714         19 SVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITV-DNKTYDVTLWDTAGQEDYERLRPMSYPNTD   96 (205)
Q Consensus        19 ~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   96 (205)
                      -..++.=|-|+|...-|||||+.+|...........-+.... -..+.. +|  -.+++.|||||..|..++.+...-.|
T Consensus       149 l~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G--~~iTFLDTPGHaAF~aMRaRGA~vtD  226 (683)
T KOG1145|consen  149 LEPRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSG--KSITFLDTPGHAAFSAMRARGANVTD  226 (683)
T ss_pred             cCCCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCC--CEEEEecCCcHHHHHHHHhccCcccc
Confidence            344667789999999999999999998776432222111111 123333 44  46888899999999999999999999


Q ss_pred             EEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHc-CCceEE
Q psy15714         97 CFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKI-KAAEYL  175 (205)
Q Consensus        97 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  175 (205)
                      ++|+|+.++|.-.-+.+  +-+.-.+.  .++|++|++||+|.+...+..-......       ++.. ...+ |-.+++
T Consensus       227 IvVLVVAadDGVmpQT~--EaIkhAk~--A~VpiVvAinKiDkp~a~pekv~~eL~~-------~gi~-~E~~GGdVQvi  294 (683)
T KOG1145|consen  227 IVVLVVAADDGVMPQTL--EAIKHAKS--ANVPIVVAINKIDKPGANPEKVKRELLS-------QGIV-VEDLGGDVQVI  294 (683)
T ss_pred             EEEEEEEccCCccHhHH--HHHHHHHh--cCCCEEEEEeccCCCCCCHHHHHHHHHH-------cCcc-HHHcCCceeEE
Confidence            99999999987544333  22222333  3999999999999876543211110000       0011 1222 335589


Q ss_pred             EcccCCCCCHHHHHHHHHHHH
Q psy15714        176 ECSAKLNEGLDQVFIAAVRSA  196 (205)
Q Consensus       176 ~~Sa~~~~~i~~~~~~i~~~~  196 (205)
                      ++||++|+|++.|-+.+.-.+
T Consensus       295 piSAl~g~nl~~L~eaill~A  315 (683)
T KOG1145|consen  295 PISALTGENLDLLEEAILLLA  315 (683)
T ss_pred             EeecccCCChHHHHHHHHHHH
Confidence            999999999999998876654

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=99.57  E-value=3e-13  Score=98.39  Aligned_cols=163  Identities=17%  Similarity=0.143  Sum_probs=99.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCc---CccccccceeEEECCEEEEEEEEEcCCCccccc--------c---cc
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTENKFPTDYV---PTVFDNYPDTITVDNKTYDVTLWDTAGQEDYER--------L---RP   89 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~~~~~~~~---~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~---~~   89 (205)
                      ++|+++|.+|+|||||+|++++.+......   +.+..........++  ..+.++||||-.....        +   ..
T Consensus         1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~viDTPG~~d~~~~~~~~~~~i~~~~~   78 (196)
T cd01852           1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDG--RRVNVIDTPGLFDTSVSPEQLSKEIVRCLS   78 (196)
T ss_pred             CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECC--eEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence            479999999999999999999876432211   122222222334455  4688899999543211        1   11


Q ss_pred             cCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCC---CCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHH
Q psy15714         90 MSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCP---KVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMR  166 (205)
Q Consensus        90 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (205)
                      ...++.+++++|.++.+ .+-.+  ...+..+.+...   -.+++++.|+.|...........      .-.....+.+.
T Consensus        79 ~~~~g~~~illVi~~~~-~t~~d--~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~------~~~~~~l~~l~  149 (196)
T cd01852          79 LSAPGPHAFLLVVPLGR-FTEEE--EQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYL------ENSCEALKRLL  149 (196)
T ss_pred             hcCCCCEEEEEEEECCC-cCHHH--HHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHH------HhccHHHHHHH
Confidence            23477899999999876 33222  244555544431   36889999999976543211110      01124556666


Q ss_pred             HHcCCceEEEcc-----cCCCCCHHHHHHHHHHHHHh
Q psy15714        167 RKIKAAEYLECS-----AKLNEGLDQVFIAAVRSAVK  198 (205)
Q Consensus       167 ~~~~~~~~~~~S-----a~~~~~i~~~~~~i~~~~~~  198 (205)
                      +..+.. ++..+     +..+.+++++++.|-+.+..
T Consensus       150 ~~c~~r-~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~  185 (196)
T cd01852         150 EKCGGR-YVAFNNKAKGEEQEQQVKELLAKVESMVKE  185 (196)
T ss_pred             HHhCCe-EEEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence            666655 44443     45677899999888887765

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>KOG1532|consensus

Probab=99.55  E-value=4.7e-14  Score=103.86  Aligned_cols=180  Identities=18%  Similarity=0.241  Sum_probs=101.2

Q ss_pred             ccccceeeEEEEECCCCCCHHHHHHHHhcCCC---CCCCcCcccc-----ccceeEEE-----------------C----
Q psy15714         17 SKSVHKALKVTTVGDGMVGKTCLLITHTENKF---PTDYVPTVFD-----NYPDTITV-----------------D----   67 (205)
Q Consensus        17 ~~~~~~~~ki~v~G~~~~GKstli~~~~~~~~---~~~~~~t~~~-----~~~~~~~~-----------------~----   67 (205)
                      +.-..++..|+|+|..|+|||||+++|..+-.   .++|.-....     .+.-.+.+                 +    
T Consensus        13 ~~~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~   92 (366)
T KOG1532|consen   13 SGAIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIV   92 (366)
T ss_pred             cccccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchh
Confidence            34456778999999999999999998885432   2222111100     00001110                 0    


Q ss_pred             --------------------CEEEEEEEEEcCCCcccc------cccccCcC--CCcEEEEEEECCC---cchHHHHHHH
Q psy15714         68 --------------------NKTYDVTLWDTAGQEDYE------RLRPMSYP--NTDCFLLCFSIGS---TSSYENILSK  116 (205)
Q Consensus        68 --------------------~~~~~~~i~D~~g~~~~~------~~~~~~~~--~~~~~i~v~d~~~---~~s~~~~~~~  116 (205)
                                          ...++..|+|||||.+.-      .+....+.  ..-++++|+|...   +.+|-.-.-+
T Consensus        93 TsLNLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlY  172 (366)
T KOG1532|consen   93 TSLNLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLY  172 (366)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHH
Confidence                                234678899999986521      11111122  2345666666432   2233221113


Q ss_pred             HHHHHhhhCCCCCEEEEeeCcccccCchhhhh---hhh----------hccccccHHHHHHHHHHcCCceEEEcccCCCC
Q psy15714        117 WYPELKHHCPKVPIILVGTKADLRSENKTIDK---KKA----------AEVDLVSTSQGKKMRRKIKAAEYLECSAKLNE  183 (205)
Q Consensus       117 ~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~---~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  183 (205)
                      -..++.+.  .+|++++.||+|+.+.....+=   .+.          .....+.......+-..+.....+.+|+.+|+
T Consensus       173 AcSilykt--klp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~  250 (366)
T KOG1532|consen  173 ACSILYKT--KLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGE  250 (366)
T ss_pred             HHHHHHhc--cCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCC
Confidence            33444444  8999999999999887654320   000          00111222223333344444448899999999


Q ss_pred             CHHHHHHHHHHHHHh
Q psy15714        184 GLDQVFIAAVRSAVK  198 (205)
Q Consensus       184 ~i~~~~~~i~~~~~~  198 (205)
                      |++++|..+-+.+-+
T Consensus       251 G~ddf~~av~~~vdE  265 (366)
T KOG1532|consen  251 GFDDFFTAVDESVDE  265 (366)
T ss_pred             cHHHHHHHHHHHHHH
Confidence            999999998877654

>PRK13768 GTPase; Provisional

Probab=99.54  E-value=3.8e-14  Score=106.80  Aligned_cols=125  Identities=20%  Similarity=0.116  Sum_probs=74.5

Q ss_pred             EEEEEEcCCCccc---ccccccC---cCC--CcEEEEEEECCCcchHHHHHH-HHHHHHhhhCCCCCEEEEeeCcccccC
Q psy15714         72 DVTLWDTAGQEDY---ERLRPMS---YPN--TDCFLLCFSIGSTSSYENILS-KWYPELKHHCPKVPIILVGTKADLRSE  142 (205)
Q Consensus        72 ~~~i~D~~g~~~~---~~~~~~~---~~~--~~~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~p~ivv~nK~Dl~~~  142 (205)
                      .+.+||+||+.+.   +..+..+   +..  .+++++++|+....+..+... .|+........+.|+++|+||+|+...
T Consensus        98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~~  177 (253)
T PRK13768         98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLSE  177 (253)
T ss_pred             CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcCc
Confidence            6899999997663   2222222   222  899999999976554433322 333333322348999999999999876


Q ss_pred             chhhhhhhhhcccccc-----------HHHHH---HHHHHcC-CceEEEcccCCCCCHHHHHHHHHHHH
Q psy15714        143 NKTIDKKKAAEVDLVS-----------TSQGK---KMRRKIK-AAEYLECSAKLNEGLDQVFIAAVRSA  196 (205)
Q Consensus       143 ~~~~~~~~~~~~~~~~-----------~~~~~---~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~i~~~~  196 (205)
                      ...............-           ....+   +..+..+ ..+++++|+++++|+++++++|.+.+
T Consensus       178 ~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l  246 (253)
T PRK13768        178 EELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVF  246 (253)
T ss_pred             hhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHc
Confidence            5432222211100000           01111   1222333 23489999999999999999998765

>PRK09866 hypothetical protein; Provisional

Probab=99.54  E-value=3.2e-13  Score=110.76  Aligned_cols=110  Identities=14%  Similarity=0.112  Sum_probs=74.0

Q ss_pred             EEEEEEEcCCCccc--c---cccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchh
Q psy15714         71 YDVTLWDTAGQEDY--E---RLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKT  145 (205)
Q Consensus        71 ~~~~i~D~~g~~~~--~---~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~  145 (205)
                      .++.+.||||-...  +   ......+..+|+++||+|+....+..+.  .++..+.+...+.|+++|+||+|+.+..  
T Consensus       230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~De--eIlk~Lkk~~K~~PVILVVNKIDl~dre--  305 (741)
T PRK09866        230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDE--EVREAILAVGQSVPLYVLVNKFDQQDRN--  305 (741)
T ss_pred             CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHH--HHHHHHHhcCCCCCEEEEEEcccCCCcc--
Confidence            35778899996432  1   1223468899999999999876554442  4556665553346999999999986432  


Q ss_pred             hhhhhhhccccccHHHHHHHHH------HcCCceEEEcccCCCCCHHHHHHHHHH
Q psy15714        146 IDKKKAAEVDLVSTSQGKKMRR------KIKAAEYLECSAKLNEGLDQVFIAAVR  194 (205)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~Sa~~~~~i~~~~~~i~~  194 (205)
                                ....+....+..      ......++++||.+|.|++++++.|.+
T Consensus       306 ----------eddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~  350 (741)
T PRK09866        306 ----------SDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN  350 (741)
T ss_pred             ----------cchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence                      112333333322      112344899999999999999999877

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=99.54  E-value=2.4e-14  Score=93.05  Aligned_cols=137  Identities=22%  Similarity=0.175  Sum_probs=98.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCC----cccccccccCcCCCcEEEE
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ----EDYERLRPMSYPNTDCFLL  100 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~----~~~~~~~~~~~~~~~~~i~  100 (205)
                      |++++|..|+|||||.+++.+...-.  ..|..      +.++..    -.+|+||.    ..+..-.......+|++++
T Consensus         3 ri~~vG~~gcGKTtL~q~L~G~~~ly--kKTQA------ve~~d~----~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~   70 (148)
T COG4917           3 RIAFVGQVGCGKTTLFQSLYGNDTLY--KKTQA------VEFNDK----GDIDTPGEYFEHPRWYHALITTLQDADVIIY   70 (148)
T ss_pred             eeEEecccccCchhHHHHhhcchhhh--cccce------eeccCc----cccCCchhhhhhhHHHHHHHHHhhccceeee
Confidence            79999999999999999988776422  22222      222221    13499994    2222223345778999999


Q ss_pred             EEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccC
Q psy15714        101 CFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAK  180 (205)
Q Consensus       101 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  180 (205)
                      |-.++++++--.-  .+.+..     ..|+|-|++|.|+.++              ...+..+.|..+-|..++|++|+.
T Consensus        71 v~~and~~s~f~p--~f~~~~-----~k~vIgvVTK~DLaed--------------~dI~~~~~~L~eaGa~~IF~~s~~  129 (148)
T COG4917          71 VHAANDPESRFPP--GFLDIG-----VKKVIGVVTKADLAED--------------ADISLVKRWLREAGAEPIFETSAV  129 (148)
T ss_pred             eecccCccccCCc--cccccc-----ccceEEEEecccccch--------------HhHHHHHHHHHHcCCcceEEEecc
Confidence            9999998763221  232222     5679999999999863              335667888888999999999999


Q ss_pred             CCCCHHHHHHHHHH
Q psy15714        181 LNEGLDQVFIAAVR  194 (205)
Q Consensus       181 ~~~~i~~~~~~i~~  194 (205)
                      ++.|++++++.+..
T Consensus       130 d~~gv~~l~~~L~~  143 (148)
T COG4917         130 DNQGVEELVDYLAS  143 (148)
T ss_pred             CcccHHHHHHHHHh
Confidence            99999999988764

>PRK12739 elongation factor G; Reviewed

Probab=99.53  E-value=3.5e-13  Score=114.81  Aligned_cols=116  Identities=16%  Similarity=0.054  Sum_probs=79.1

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcC--CCC------CC-----CcC---cccccc---ceeEEECCEEEEEEEEEcCCC
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTEN--KFP------TD-----YVP---TVFDNY---PDTITVDNKTYDVTLWDTAGQ   81 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~--~~~------~~-----~~~---t~~~~~---~~~~~~~~~~~~~~i~D~~g~   81 (205)
                      .+-.+|+|+|.+++|||||++++...  ...      ..     +.+   ..+...   ...+..++  .++.++||||+
T Consensus         6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG~   83 (691)
T PRK12739          6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKG--HRINIIDTPGH   83 (691)
T ss_pred             cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECC--EEEEEEcCCCH
Confidence            34568999999999999999999742  110      00     000   001111   11222333  67899999999


Q ss_pred             cccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccC
Q psy15714         82 EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSE  142 (205)
Q Consensus        82 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  142 (205)
                      ..+.......+..+|++++|+|+.+.......  .++..+...  ++|+++++||+|+...
T Consensus        84 ~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~--~i~~~~~~~--~~p~iv~iNK~D~~~~  140 (691)
T PRK12739         84 VDFTIEVERSLRVLDGAVAVFDAVSGVEPQSE--TVWRQADKY--GVPRIVFVNKMDRIGA  140 (691)
T ss_pred             HHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHH--HHHHHHHHc--CCCEEEEEECCCCCCC
Confidence            88777777788999999999999877544433  344445544  7999999999998754

>KOG1191|consensus

Probab=99.52  E-value=9e-14  Score=109.75  Aligned_cols=166  Identities=23%  Similarity=0.202  Sum_probs=108.2

Q ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCC--CCCCcCccccccceeEEECCEEEEEEEEEcCCCccc-----ccc----c
Q psy15714         20 VHKALKVTTVGDGMVGKTCLLITHTENKF--PTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY-----ERL----R   88 (205)
Q Consensus        20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-----~~~----~   88 (205)
                      ....+.|+++|.|++|||||+|+|.....  ..+...|+.+.....+.++|  +++.+.||+|-.+-     +.+    .
T Consensus       265 lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G--~~v~L~DTAGiRe~~~~~iE~~gI~rA  342 (531)
T KOG1191|consen  265 LQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNG--VPVRLSDTAGIREESNDGIEALGIERA  342 (531)
T ss_pred             hhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCC--eEEEEEeccccccccCChhHHHhHHHH
Confidence            34558999999999999999999998764  35556666777777788888  66778899995441     111    1


Q ss_pred             ccCcCCCcEEEEEEECCCc--chHHHHHHHHHHHHhhhC-------CCCCEEEEeeCcccccCchhhhhhhhhccccccH
Q psy15714         89 PMSYPNTDCFLLCFSIGST--SSYENILSKWYPELKHHC-------PKVPIILVGTKADLRSENKTIDKKKAAEVDLVST  159 (205)
Q Consensus        89 ~~~~~~~~~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~-------~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~  159 (205)
                      +..+..+|++++|+|+...  ++-..+. ..+.....-.       ...|++++.||+|+...-..           .+.
T Consensus       343 ~k~~~~advi~~vvda~~~~t~sd~~i~-~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~-----------~~~  410 (531)
T KOG1191|consen  343 RKRIERADVILLVVDAEESDTESDLKIA-RILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPE-----------MTK  410 (531)
T ss_pred             HHHHhhcCEEEEEecccccccccchHHH-HHHHHhccceEEEeccccccceEEEechhhccCcccc-----------ccC
Confidence            2357889999999999433  3322222 2222222211       24799999999999875221           111


Q ss_pred             HHHHHHH-HHc-CCceEEEcccCCCCCHHHHHHHHHHHHHhh
Q psy15714        160 SQGKKMR-RKI-KAAEYLECSAKLNEGLDQVFIAAVRSAVKK  199 (205)
Q Consensus       160 ~~~~~~~-~~~-~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  199 (205)
                      .-..... ... ....+.++|+++++|++.+...+.+.+...
T Consensus       411 ~~~~~~~~~~~~~~~i~~~vs~~tkeg~~~L~~all~~~~~~  452 (531)
T KOG1191|consen  411 IPVVYPSAEGRSVFPIVVEVSCTTKEGCERLSTALLNIVERL  452 (531)
T ss_pred             CceeccccccCcccceEEEeeechhhhHHHHHHHHHHHHHHh
Confidence            0000000 111 223357799999999999999888876553

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=99.52  E-value=1.7e-13  Score=104.25  Aligned_cols=156  Identities=15%  Similarity=0.088  Sum_probs=103.5

Q ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCC---------CCCc---Cccccccc---------------eeEE-----EC
Q psy15714         20 VHKALKVTTVGDGMVGKTCLLITHTENKFP---------TDYV---PTVFDNYP---------------DTIT-----VD   67 (205)
Q Consensus        20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~---------~~~~---~t~~~~~~---------------~~~~-----~~   67 (205)
                      .+..+|++-+|...-||||||.||+.+.-.         ....   .+.+....               .++.     +.
T Consensus         3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs   82 (431)
T COG2895           3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS   82 (431)
T ss_pred             cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc
Confidence            456799999999999999999998864211         0000   11111110               1111     11


Q ss_pred             CEEEEEEEEEcCCCcccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhh
Q psy15714         68 NKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTID  147 (205)
Q Consensus        68 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~  147 (205)
                      -.+-+|.|-|+|||+.|......-...+|++|+++|+-  ..+.+.. .-...+.....=..++++.||+||.+......
T Consensus        83 T~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR--~Gvl~QT-rRHs~I~sLLGIrhvvvAVNKmDLvdy~e~~F  159 (431)
T COG2895          83 TEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDAR--KGVLEQT-RRHSFIASLLGIRHVVVAVNKMDLVDYSEEVF  159 (431)
T ss_pred             cccceEEEecCCcHHHHhhhhhcccccccEEEEEEecc--hhhHHHh-HHHHHHHHHhCCcEEEEEEeeecccccCHHHH
Confidence            23457899999999999998888899999999999984  3333322 22233333333466899999999987653211


Q ss_pred             hhhhhccccccHHHHHHHHHHcCCc--eEEEcccCCCCCHH
Q psy15714        148 KKKAAEVDLVSTSQGKKMRRKIKAA--EYLECSAKLNEGLD  186 (205)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~Sa~~~~~i~  186 (205)
                              .....+-..++.+++..  .++++||..|+|+-
T Consensus       160 --------~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~  192 (431)
T COG2895         160 --------EAIVADYLAFAAQLGLKDVRFIPISALLGDNVV  192 (431)
T ss_pred             --------HHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence                    22345667788888764  48999999999874

>PRK00007 elongation factor G; Reviewed

Probab=99.52  E-value=4.9e-13  Score=113.93  Aligned_cols=117  Identities=15%  Similarity=0.036  Sum_probs=78.2

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhc--CCCCCC-----------CcC---cccccc---ceeEEECCEEEEEEEEEcCCC
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTE--NKFPTD-----------YVP---TVFDNY---PDTITVDNKTYDVTLWDTAGQ   81 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~--~~~~~~-----------~~~---t~~~~~---~~~~~~~~~~~~~~i~D~~g~   81 (205)
                      .+--+|+|+|.+++|||||++++..  +.....           +.+   ..+...   ...+...+  .++.+.||||+
T Consensus         8 ~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~--~~~~liDTPG~   85 (693)
T PRK00007          8 ERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKD--HRINIIDTPGH   85 (693)
T ss_pred             cceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECC--eEEEEEeCCCc
Confidence            3456999999999999999999973  221100           000   001111   11222333  57888999999


Q ss_pred             cccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCc
Q psy15714         82 EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSEN  143 (205)
Q Consensus        82 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~  143 (205)
                      ..|.......+..+|++|+|+|+......+..  ..+..+...  ++|.++++||+|+....
T Consensus        86 ~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~--~~~~~~~~~--~~p~iv~vNK~D~~~~~  143 (693)
T PRK00007         86 VDFTIEVERSLRVLDGAVAVFDAVGGVEPQSE--TVWRQADKY--KVPRIAFVNKMDRTGAD  143 (693)
T ss_pred             HHHHHHHHHHHHHcCEEEEEEECCCCcchhhH--HHHHHHHHc--CCCEEEEEECCCCCCCC
Confidence            87766555678889999999998877555443  344455555  79999999999987543

>cd00066 G-alpha G protein alpha subunit

Probab=99.51  E-value=6.2e-13  Score=103.35  Aligned_cols=131  Identities=15%  Similarity=0.126  Sum_probs=88.6

Q ss_pred             EEEEEEEEcCCCcccccccccCcCCCcEEEEEEECCCc----------chHHHHHHHHHHHHhhhC-CCCCEEEEeeCcc
Q psy15714         70 TYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGST----------SSYENILSKWYPELKHHC-PKVPIILVGTKAD  138 (205)
Q Consensus        70 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D  138 (205)
                      .+.+.+||++|+...+..|..++.++++++||+|.++.          ..+.+....|-..+.... .++|+++++||.|
T Consensus       160 ~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D  239 (317)
T cd00066         160 NLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKD  239 (317)
T ss_pred             ceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChH
Confidence            46788999999999999999999999999999999874          345555544555554433 6899999999999


Q ss_pred             cccCchhhh-hhhh---hccccccHHHHHHHHHHc---------CCceEEEcccCCCCCHHHHHHHHHHHHHhhc
Q psy15714        139 LRSENKTID-KKKA---AEVDLVSTSQGKKMRRKI---------KAAEYLECSAKLNEGLDQVFIAAVRSAVKKQ  200 (205)
Q Consensus       139 l~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~---------~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~  200 (205)
                      +........ ....   ......+.+++..+....         .......++|.+..++..+|+.+.+.++...
T Consensus       240 ~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~~  314 (317)
T cd00066         240 LFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQNN  314 (317)
T ss_pred             HHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHHH
Confidence            754321111 1111   111012333433332221         1233567899999999999999999988764

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>KOG1486|consensus

Probab=99.51  E-value=1.4e-12  Score=95.11  Aligned_cols=164  Identities=17%  Similarity=0.170  Sum_probs=118.6

Q ss_pred             CccccccccceeeEEEEECCCCCCHHHHHHHHhcCCC-CCCCcCccccccceeEEECCEEEEEEEEEcCCCccccc----
Q psy15714         12 DKDVKSKSVHKALKVTTVGDGMVGKTCLLITHTENKF-PTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYER----   86 (205)
Q Consensus        12 ~~~~~~~~~~~~~ki~v~G~~~~GKstli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~----   86 (205)
                      .++.-........||+++|.|.+|||||+..+..... ...|..|+-+..+..+.+++.+  +++.|+||-..--+    
T Consensus        51 kg~GFeV~KsGdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga~--IQllDLPGIieGAsqgkG  128 (364)
T KOG1486|consen   51 KGEGFEVLKSGDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGAN--IQLLDLPGIIEGASQGKG  128 (364)
T ss_pred             CCCCeeeeccCCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCce--EEEecCcccccccccCCC
Confidence            4555555666778999999999999999988886543 3567777777877788888855  77779999432211    


Q ss_pred             ---ccccCcCCCcEEEEEEECCCcchHHHHHH------------------------------------------------
Q psy15714         87 ---LRPMSYPNTDCFLLCFSIGSTSSYENILS------------------------------------------------  115 (205)
Q Consensus        87 ---~~~~~~~~~~~~i~v~d~~~~~s~~~~~~------------------------------------------------  115 (205)
                         ......+.+|+++.|.|++..+.-..+.+                                                
T Consensus       129 RGRQviavArtaDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILh  208 (364)
T KOG1486|consen  129 RGRQVIAVARTADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILH  208 (364)
T ss_pred             CCceEEEEeecccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHH
Confidence               12245788999999999986543332222                                                


Q ss_pred             ------------------HHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEc
Q psy15714        116 ------------------KWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLEC  177 (205)
Q Consensus       116 ------------------~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (205)
                                        .+++.+......++++.|.||+|                 +++.++...+++..+   -+-+
T Consensus       209 eykI~Naevl~ReD~t~DdfIDvi~gnr~Y~~ClYvYnKID-----------------~vs~eevdrlAr~Pn---svVi  268 (364)
T KOG1486|consen  209 EYKIHNAEVLFREDCTVDDFIDVIEGNRVYIKCLYVYNKID-----------------QVSIEEVDRLARQPN---SVVI  268 (364)
T ss_pred             HHeeccceEEEecCCChHHHHHHHhccceEEEEEEEeeccc-----------------eecHHHHHHHhcCCC---cEEE
Confidence                              34444443334567788888888                 788889998987755   3568


Q ss_pred             ccCCCCCHHHHHHHHHHHHH
Q psy15714        178 SAKLNEGLDQVFIAAVRSAV  197 (205)
Q Consensus       178 Sa~~~~~i~~~~~~i~~~~~  197 (205)
                      |+....|++.+++.+...+.
T Consensus       269 SC~m~lnld~lle~iWe~l~  288 (364)
T KOG1486|consen  269 SCNMKLNLDRLLERIWEELN  288 (364)
T ss_pred             EeccccCHHHHHHHHHHHhc
Confidence            88899999999999988764

>KOG1144|consensus

Probab=99.50  E-value=1.4e-13  Score=113.05  Aligned_cols=177  Identities=19%  Similarity=0.143  Sum_probs=111.1

Q ss_pred             cccceeeEEEEECCCCCCHHHHHHHHhcCCCCCC----CcCccccccceeE---------EECC----EEEEEEEEEcCC
Q psy15714         18 KSVHKALKVTTVGDGMVGKTCLLITHTENKFPTD----YVPTVFDNYPDTI---------TVDN----KTYDVTLWDTAG   80 (205)
Q Consensus        18 ~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~----~~~t~~~~~~~~~---------~~~~----~~~~~~i~D~~g   80 (205)
                      ....+..-+||+|...+|||-|+..+.+..+...    ....++..|....         .-++    ...-+.++|+||
T Consensus       470 ~~~lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpg  549 (1064)
T KOG1144|consen  470 TENLRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPG  549 (1064)
T ss_pred             chhcCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCC
Confidence            3456778899999999999999988887443221    1222233321110         0011    122478889999


Q ss_pred             CcccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhh---hhhh-hcccc
Q psy15714         81 QEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTID---KKKA-AEVDL  156 (205)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~---~~~~-~~~~~  156 (205)
                      |+.|..++.+....||++|+|+|+...-.-+.+  +-+..++..  +.|+||++||+|..+.-....   .... ..+..
T Consensus       550 hEsFtnlRsrgsslC~~aIlvvdImhGlepqti--ESi~lLR~r--ktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k  625 (1064)
T KOG1144|consen  550 HESFTNLRSRGSSLCDLAILVVDIMHGLEPQTI--ESINLLRMR--KTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKK  625 (1064)
T ss_pred             chhhhhhhhccccccceEEEEeehhccCCcchh--HHHHHHHhc--CCCeEEeehhhhhhcccccCCCchHHHHHHHhhH
Confidence            999999999999999999999999865333332  334455555  899999999999865422111   0000 00000


Q ss_pred             ccHHH--------HHHHHHH-------------cCCceEEEcccCCCCCHHHHHHHHHHHHHh
Q psy15714        157 VSTSQ--------GKKMRRK-------------IKAAEYLECSAKLNEGLDQVFIAAVRSAVK  198 (205)
Q Consensus       157 ~~~~~--------~~~~~~~-------------~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  198 (205)
                      ...++        ..+|+.+             -....++++||.+|+||.+|+.+|++....
T Consensus       626 ~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk  688 (1064)
T KOG1144|consen  626 DVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQK  688 (1064)
T ss_pred             HHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHH
Confidence            01111        1112211             022346889999999999999999887544

>PRK14845 translation initiation factor IF-2; Provisional

Probab=99.50  E-value=6.5e-13  Score=115.58  Aligned_cols=156  Identities=20%  Similarity=0.220  Sum_probs=92.4

Q ss_pred             CCHHHHHHHHhcCCCCCC----CcCccccccceeEEECC----------------EEEEEEEEEcCCCcccccccccCcC
Q psy15714         34 VGKTCLLITHTENKFPTD----YVPTVFDNYPDTITVDN----------------KTYDVTLWDTAGQEDYERLRPMSYP   93 (205)
Q Consensus        34 ~GKstli~~~~~~~~~~~----~~~t~~~~~~~~~~~~~----------------~~~~~~i~D~~g~~~~~~~~~~~~~   93 (205)
                      ++||||+.++.+......    .+..++..+   +..+.                ....+.+|||||++.|..+....+.
T Consensus       472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~---v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~  548 (1049)
T PRK14845        472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATE---IPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGS  548 (1049)
T ss_pred             cccccHHHHHhCCCcccccCCCceeccceEE---EEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcc
Confidence            459999999997765432    222223222   11110                0123899999999999888777888


Q ss_pred             CCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhh----hhhhhccccccHHHH-------
Q psy15714         94 NTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTID----KKKAAEVDLVSTSQG-------  162 (205)
Q Consensus        94 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~----~~~~~~~~~~~~~~~-------  162 (205)
                      .+|++++|+|+++.-+-...  ..+..+...  ++|+++|+||+|+........    ........+...++.       
T Consensus       549 ~aDivlLVVDa~~Gi~~qT~--e~I~~lk~~--~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v  624 (1049)
T PRK14845        549 LADLAVLVVDINEGFKPQTI--EAINILRQY--KTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYEL  624 (1049)
T ss_pred             cCCEEEEEEECcccCCHhHH--HHHHHHHHc--CCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHH
Confidence            99999999999874222221  233344444  789999999999964211000    000000000000000       


Q ss_pred             --------------HHHHHHcCCceEEEcccCCCCCHHHHHHHHHHHH
Q psy15714        163 --------------KKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSA  196 (205)
Q Consensus       163 --------------~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~  196 (205)
                                    .......+..+++++||++|+||++++..+....
T Consensus       625 ~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~  672 (1049)
T PRK14845        625 IGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLA  672 (1049)
T ss_pred             hhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhh
Confidence                          0001112445699999999999999998876543

>PRK12740 elongation factor G; Reviewed

Probab=99.49  E-value=2.3e-13  Score=115.84  Aligned_cols=111  Identities=18%  Similarity=0.109  Sum_probs=72.8

Q ss_pred             ECCCCCCHHHHHHHHhcCC--CCC--CC-cC-cc----------cccc-ceeEEECCEEEEEEEEEcCCCcccccccccC
Q psy15714         29 VGDGMVGKTCLLITHTENK--FPT--DY-VP-TV----------FDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMS   91 (205)
Q Consensus        29 ~G~~~~GKstli~~~~~~~--~~~--~~-~~-t~----------~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~   91 (205)
                      +|++++|||||++++....  ...  .. .. +.          +... .....+....+.+.+||+||+..+.......
T Consensus         1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~   80 (668)
T PRK12740          1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA   80 (668)
T ss_pred             CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence            6999999999999985321  110  00 00 00          0000 0011122234779999999998877766778


Q ss_pred             cCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCc
Q psy15714         92 YPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSEN  143 (205)
Q Consensus        92 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~  143 (205)
                      +..+|++++|+|+++.......  .++..+...  ++|+++|+||+|+....
T Consensus        81 l~~aD~vllvvd~~~~~~~~~~--~~~~~~~~~--~~p~iiv~NK~D~~~~~  128 (668)
T PRK12740         81 LRVLDGAVVVVCAVGGVEPQTE--TVWRQAEKY--GVPRIIFVNKMDRAGAD  128 (668)
T ss_pred             HHHhCeEEEEEeCCCCcCHHHH--HHHHHHHHc--CCCEEEEEECCCCCCCC
Confidence            8999999999999887665543  233344443  79999999999987543

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=99.49  E-value=1.7e-13  Score=107.84  Aligned_cols=159  Identities=20%  Similarity=0.178  Sum_probs=107.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCC--CCCC-----CcCc--c----cccc-----ceeEE-ECCEEEEEEEEEcCCCccc
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTENK--FPTD-----YVPT--V----FDNY-----PDTIT-VDNKTYDVTLWDTAGQEDY   84 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~~--~~~~-----~~~t--~----~~~~-----~~~~~-~~~~~~~~~i~D~~g~~~~   84 (205)
                      -++.++.+-.-|||||..|+....  +...     ..-+  +    +...     .-.+. -+|..+.++++|||||-.|
T Consensus        10 RNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDF   89 (603)
T COG0481          10 RNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF   89 (603)
T ss_pred             cceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccce
Confidence            357888899999999998887532  1110     0000  0    1111     01112 2568899999999999988


Q ss_pred             ccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHH
Q psy15714         85 ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKK  164 (205)
Q Consensus        85 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  164 (205)
                      .---.+-+..|.++++|+|++..-..+.+.+ .+..+.   .+.-++.|+||+||+..++           ....++.+.
T Consensus        90 sYEVSRSLAACEGalLvVDAsQGveAQTlAN-~YlAle---~~LeIiPViNKIDLP~Adp-----------ervk~eIe~  154 (603)
T COG0481          90 SYEVSRSLAACEGALLVVDASQGVEAQTLAN-VYLALE---NNLEIIPVLNKIDLPAADP-----------ERVKQEIED  154 (603)
T ss_pred             EEEehhhHhhCCCcEEEEECccchHHHHHHH-HHHHHH---cCcEEEEeeecccCCCCCH-----------HHHHHHHHH
Confidence            7666667889999999999998876666653 323232   3788999999999987653           122222222


Q ss_pred             HHHHcCCceEEEcccCCCCCHHHHHHHHHHHHHh
Q psy15714        165 MRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVK  198 (205)
Q Consensus       165 ~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  198 (205)
                      .. ..+....+.+||++|.||+++++.|++.+-.
T Consensus       155 ~i-Gid~~dav~~SAKtG~gI~~iLe~Iv~~iP~  187 (603)
T COG0481         155 II-GIDASDAVLVSAKTGIGIEDVLEAIVEKIPP  187 (603)
T ss_pred             Hh-CCCcchheeEecccCCCHHHHHHHHHhhCCC
Confidence            21 2233337899999999999999999988654

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=99.49  E-value=3.9e-13  Score=90.40  Aligned_cols=113  Identities=28%  Similarity=0.360  Sum_probs=81.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCc-CccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEE
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTENKFPTDYV-PTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCF  102 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~  102 (205)
                      +|++++|..|+|||+|+.++..+.+...+. ++.+                          +........+..+.++++|
T Consensus         1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~--------------------------~~~~~~~~~~s~~~~~~v~   54 (124)
T smart00010        1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG--------------------------IDVYDPTSYESFDVVLQCW   54 (124)
T ss_pred             CEEEEECCCChhHHHHHHHHhcCCccccCceehhh--------------------------hhhccccccCCCCEEEEEE
Confidence            489999999999999999998888765443 4333                          3333345678889999999


Q ss_pred             ECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCC
Q psy15714        103 SIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKL  181 (205)
Q Consensus       103 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  181 (205)
                      +.++..+++.+   |...+.... .++|.++++||.|+....            .+..++...         ++++|+++
T Consensus        55 ~~~~~~s~~~~---~~~~i~~~~k~dl~~~~~~nk~dl~~~~------------~~~~~~~~~---------~~~~s~~~  110 (124)
T smart00010       55 RVDDRDSADNK---NVPEVLVGNKSDLPILVGGNRDVLEEER------------QVATEEGLE---------FAETSAKT  110 (124)
T ss_pred             EccCHHHHHHH---hHHHHHhcCCCCCcEEEEeechhhHhhC------------cCCHHHHHH---------HHHHhCCC
Confidence            99999988664   766665443 578899999999985422            222222222         56789999


Q ss_pred             CCCHH
Q psy15714        182 NEGLD  186 (205)
Q Consensus       182 ~~~i~  186 (205)
                      +.|+.
T Consensus       111 ~~~~~  115 (124)
T smart00010      111 PEEGE  115 (124)
T ss_pred             cchhh
Confidence            99874

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=99.48  E-value=2.2e-14  Score=106.87  Aligned_cols=125  Identities=17%  Similarity=0.155  Sum_probs=62.2

Q ss_pred             EEEEEEcCCCcccccccccC------c--CCCcEEEEEEECCCcchHHHHHHHHHHHHhh-hCCCCCEEEEeeCcccccC
Q psy15714         72 DVTLWDTAGQEDYERLRPMS------Y--PNTDCFLLCFSIGSTSSYENILSKWYPELKH-HCPKVPIILVGTKADLRSE  142 (205)
Q Consensus        72 ~~~i~D~~g~~~~~~~~~~~------~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~  142 (205)
                      .+.|+|||||.++-..+...      +  ...-++|+++|+.-..+.......++..+.. ...+.|.+.|+||+|+...
T Consensus        92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~  171 (238)
T PF03029_consen   92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK  171 (238)
T ss_dssp             SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred             cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence            68999999998754433322      1  4456788889876444433332233222221 1138999999999999874


Q ss_pred             chhhhhhhhhccccc-------cHHHHHHHHH---HcCCc-eEEEcccCCCCCHHHHHHHHHHHH
Q psy15714        143 NKTIDKKKAAEVDLV-------STSQGKKMRR---KIKAA-EYLECSAKLNEGLDQVFIAAVRSA  196 (205)
Q Consensus       143 ~~~~~~~~~~~~~~~-------~~~~~~~~~~---~~~~~-~~~~~Sa~~~~~i~~~~~~i~~~~  196 (205)
                      ...............       .....++++.   ..+.. .++.+|+++++|+++++..+-+.+
T Consensus       172 ~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~  236 (238)
T PF03029_consen  172 YLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN  236 (238)
T ss_dssp             HHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred             hhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence            421111111110000       1111222222   23444 699999999999999999887654

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>KOG1707|consensus

Probab=99.48  E-value=2e-12  Score=104.04  Aligned_cols=166  Identities=20%  Similarity=0.263  Sum_probs=124.2

Q ss_pred             cccccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCC
Q psy15714         16 KSKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPN   94 (205)
Q Consensus        16 ~~~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~   94 (205)
                      +.....+.+.+.|+|+.++|||.|++.+.++.+......+....+ ...+...+....+.+-|.+-. ....+...- ..
T Consensus       418 ~~~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~  495 (625)
T KOG1707|consen  418 KKQTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AA  495 (625)
T ss_pred             cccccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ce
Confidence            345667889999999999999999999999998876666665555 345566688888888898765 333332222 78


Q ss_pred             CcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceE
Q psy15714         95 TDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEY  174 (205)
Q Consensus        95 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (205)
                      +|++.++||.+++.+|.... .....-... ..+|+++|++|+|+....            +...-+-.+++.++++.+.
T Consensus       496 cDv~~~~YDsS~p~sf~~~a-~v~~~~~~~-~~~Pc~~va~K~dlDe~~------------Q~~~iqpde~~~~~~i~~P  561 (625)
T KOG1707|consen  496 CDVACLVYDSSNPRSFEYLA-EVYNKYFDL-YKIPCLMVATKADLDEVP------------QRYSIQPDEFCRQLGLPPP  561 (625)
T ss_pred             eeeEEEecccCCchHHHHHH-HHHHHhhhc-cCCceEEEeeccccchhh------------hccCCChHHHHHhcCCCCC
Confidence            99999999999999998876 333333222 699999999999998754            2222222788999999888


Q ss_pred             EEcccCCCCCHHHHHHHHHHHHHh
Q psy15714        175 LECSAKLNEGLDQVFIAAVRSAVK  198 (205)
Q Consensus       175 ~~~Sa~~~~~i~~~~~~i~~~~~~  198 (205)
                      ...|.+..-. .++|..|.-++..
T Consensus       562 ~~~S~~~~~s-~~lf~kL~~~A~~  584 (625)
T KOG1707|consen  562 IHISSKTLSS-NELFIKLATMAQY  584 (625)
T ss_pred             eeeccCCCCC-chHHHHHHHhhhC
Confidence            8888885333 8999998877654

>PRK09602 translation-associated GTPase; Reviewed

Probab=99.47  E-value=1.3e-12  Score=104.06  Aligned_cols=82  Identities=21%  Similarity=0.224  Sum_probs=54.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCC-CCcCcc-----ccccc-ee---------E------EECC-EEEEEEEEEcCC
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTENKFPT-DYVPTV-----FDNYP-DT---------I------TVDN-KTYDVTLWDTAG   80 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~~~~~-~~~~t~-----~~~~~-~~---------~------~~~~-~~~~~~i~D~~g   80 (205)
                      ++|+++|.|++|||||++++++..+.. .+..++     +.... ..         .      ..++ ....+++||+||
T Consensus         2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG   81 (396)
T PRK09602          2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG   81 (396)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence            689999999999999999999876642 333222     22110 00         0      0111 236799999999


Q ss_pred             C----cccccccccC---cCCCcEEEEEEECC
Q psy15714         81 Q----EDYERLRPMS---YPNTDCFLLCFSIG  105 (205)
Q Consensus        81 ~----~~~~~~~~~~---~~~~~~~i~v~d~~  105 (205)
                      -    ...+.+...+   ++++|++++|+|+.
T Consensus        82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~  113 (396)
T PRK09602         82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS  113 (396)
T ss_pred             cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence            4    3333333344   88999999999986

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=99.47  E-value=4e-13  Score=100.72  Aligned_cols=96  Identities=21%  Similarity=0.176  Sum_probs=77.0

Q ss_pred             cccccccccCcCCCcEEEEEEECCCcc-hHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHH
Q psy15714         82 EDYERLRPMSYPNTDCFLLCFSIGSTS-SYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTS  160 (205)
Q Consensus        82 ~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~  160 (205)
                      +++..+.+.++.++|.+++|||+.++. ++..+. .|+..+..  .++|+++|+||+||....            .+..+
T Consensus        24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~-r~l~~~~~--~~i~~vIV~NK~DL~~~~------------~~~~~   88 (245)
T TIGR00157        24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLD-RFLVVAEA--QNIEPIIVLNKIDLLDDE------------DMEKE   88 (245)
T ss_pred             cccceEECcccccCCEEEEEEECCCCCCCHHHHH-HHHHHHHH--CCCCEEEEEECcccCCCH------------HHHHH
Confidence            567788888999999999999999887 788876 88877765  489999999999997543            33334


Q ss_pred             HHHHHHHHcCCceEEEcccCCCCCHHHHHHHHHH
Q psy15714        161 QGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR  194 (205)
Q Consensus       161 ~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~  194 (205)
                      +...+. ..+.. ++++||++|+|++++|+.+..
T Consensus        89 ~~~~~~-~~g~~-v~~~SAktg~gi~eLf~~l~~  120 (245)
T TIGR00157        89 QLDIYR-NIGYQ-VLMTSSKNQDGLKELIEALQN  120 (245)
T ss_pred             HHHHHH-HCCCe-EEEEecCCchhHHHHHhhhcC
Confidence            455554 46665 999999999999999988753

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>smart00275 G_alpha G protein alpha subunit

Probab=99.44  E-value=1.9e-12  Score=101.49  Aligned_cols=130  Identities=15%  Similarity=0.133  Sum_probs=87.5

Q ss_pred             EEEEEEEEcCCCcccccccccCcCCCcEEEEEEECCCc----------chHHHHHHHHHHHHhhhC-CCCCEEEEeeCcc
Q psy15714         70 TYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGST----------SSYENILSKWYPELKHHC-PKVPIILVGTKAD  138 (205)
Q Consensus        70 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D  138 (205)
                      .+.+.+||.+|+...+..|..++.++++++||+|+++.          ..+.+....|...+.... .++|++|++||.|
T Consensus       183 ~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D  262 (342)
T smart00275      183 KLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKID  262 (342)
T ss_pred             CeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHH
Confidence            35678999999999999999999999999999999973          345565545555554332 6899999999999


Q ss_pred             cccCchhhhhh-h---hhccccccHHHHHHHHHH-----c-----CCceEEEcccCCCCCHHHHHHHHHHHHHhhc
Q psy15714        139 LRSENKTIDKK-K---AAEVDLVSTSQGKKMRRK-----I-----KAAEYLECSAKLNEGLDQVFIAAVRSAVKKQ  200 (205)
Q Consensus       139 l~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~-----~-----~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~  200 (205)
                      +....-..... .   .... ..+.+.+..+...     .     .....+.++|.+-.++..+|+.+...++.+.
T Consensus       263 ~~~~Kl~~~~l~~~fp~y~g-~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~~  337 (342)
T smart00275      263 LFEEKIKKVPLVDYFPDYKG-PNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQRN  337 (342)
T ss_pred             hHHHHhCCCchhccCCCCCC-CCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHHH
Confidence            85332111100 0   0111 1233333332221     1     1233577899999999999999988887654

Subunit of G proteins that contains the guanine nucleotide binding site

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.44  E-value=8.2e-13  Score=102.62  Aligned_cols=159  Identities=15%  Similarity=0.129  Sum_probs=98.8

Q ss_pred             cceeeEEEEECCCCCCHHHHHHHHhc--CCCCC----------------------CCcCcccccc-cee-----EEECCE
Q psy15714         20 VHKALKVTTVGDGMVGKTCLLITHTE--NKFPT----------------------DYVPTVFDNY-PDT-----ITVDNK   69 (205)
Q Consensus        20 ~~~~~ki~v~G~~~~GKstli~~~~~--~~~~~----------------------~~~~t~~~~~-~~~-----~~~~~~   69 (205)
                      .+..++++++|+.++|||||+.+|+.  +.+..                      -.+.+...+. -.+     ..+...
T Consensus         4 ~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~   83 (428)
T COG5256           4 EKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD   83 (428)
T ss_pred             CCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC
Confidence            45678999999999999999988773  22211                      0111111111 011     122334


Q ss_pred             EEEEEEEEcCCCcccccccccCcCCCcEEEEEEECCCcc---h--HHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCch
Q psy15714         70 TYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTS---S--YENILSKWYPELKHHCPKVPIILVGTKADLRSENK  144 (205)
Q Consensus        70 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s--~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~  144 (205)
                      .+.++|.|+|||..|-......+.++|+.|+|+|+.+.+   .  ......+. ..+.+...-..++|++||+|+.+-+.
T Consensus        84 k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH-~~La~tlGi~~lIVavNKMD~v~wde  162 (428)
T COG5256          84 KYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREH-AFLARTLGIKQLIVAVNKMDLVSWDE  162 (428)
T ss_pred             CceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHH-HHHHHhcCCceEEEEEEcccccccCH
Confidence            567999999999999888888899999999999998763   1  11111111 11222222456789999999986321


Q ss_pred             hhhhhhhhccccccHHHHHHHHHHcCCc----eEEEcccCCCCCHHH
Q psy15714        145 TIDKKKAAEVDLVSTSQGKKMRRKIKAA----EYLECSAKLNEGLDQ  187 (205)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Sa~~~~~i~~  187 (205)
                        +.  .    .-...+...+.+..+..    +++++|+..|+|+.+
T Consensus       163 --~r--f----~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~  201 (428)
T COG5256         163 --ER--F----EEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK  201 (428)
T ss_pred             --HH--H----HHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence              10  0    11223334466666543    499999999999753

>TIGR00101 ureG urease accessory protein UreG

Probab=99.44  E-value=1.1e-12  Score=95.37  Aligned_cols=102  Identities=18%  Similarity=0.192  Sum_probs=62.7

Q ss_pred             EEEEEEEcCCCcccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCE--EEEeeCcccccCchhhhh
Q psy15714         71 YDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPI--ILVGTKADLRSENKTIDK  148 (205)
Q Consensus        71 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~--ivv~nK~Dl~~~~~~~~~  148 (205)
                      ....+.++.|..-.....+   .-++.+|.|+|+.+..+...   .+..       ++..  ++++||+|+.+..     
T Consensus        92 ~D~iiIEt~G~~l~~~~~~---~l~~~~i~vvD~~~~~~~~~---~~~~-------qi~~ad~~~~~k~d~~~~~-----  153 (199)
T TIGR00101        92 LEMVFIESGGDNLSATFSP---ELADLTIFVIDVAAGDKIPR---KGGP-------GITRSDLLVINKIDLAPMV-----  153 (199)
T ss_pred             CCEEEEECCCCCcccccch---hhhCcEEEEEEcchhhhhhh---hhHh-------HhhhccEEEEEhhhccccc-----
Confidence            4566677777321111111   12678999999987655322   1111       3334  8999999998531     


Q ss_pred             hhhhccccccHHHHHHHHHH-cCCceEEEcccCCCCCHHHHHHHHHHHHH
Q psy15714        149 KKAAEVDLVSTSQGKKMRRK-IKAAEYLECSAKLNEGLDQVFIAAVRSAV  197 (205)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~  197 (205)
                             ....+...+..+. ....+++++||++|+|++++|+++.+...
T Consensus       154 -------~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~~  196 (199)
T TIGR00101       154 -------GADLGVMERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYAL  196 (199)
T ss_pred             -------cccHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence                   1112223333333 33455999999999999999999987654

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=99.43  E-value=8.8e-13  Score=112.73  Aligned_cols=118  Identities=15%  Similarity=0.059  Sum_probs=80.1

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCC--CC---------CCCc-------Ccccccc-ceeEEECCEEEEEEEEEcCCC
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTENK--FP---------TDYV-------PTVFDNY-PDTITVDNKTYDVTLWDTAGQ   81 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~~--~~---------~~~~-------~t~~~~~-~~~~~~~~~~~~~~i~D~~g~   81 (205)
                      ...-+|+++|+.++|||||+++|....  ..         -.+.       .|+.... .....+++..+++.+|||||+
T Consensus        17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~   96 (720)
T TIGR00490        17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH   96 (720)
T ss_pred             ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc
Confidence            345699999999999999999987421  00         0111       1111111 112235566789999999999


Q ss_pred             cccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccC
Q psy15714         82 EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSE  142 (205)
Q Consensus        82 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  142 (205)
                      .+|.......+..+|++++|+|+.+....+... .| ..+...  ++|.++++||+|....
T Consensus        97 ~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~-~~-~~~~~~--~~p~ivviNKiD~~~~  153 (720)
T TIGR00490        97 VDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTET-VL-RQALKE--NVKPVLFINKVDRLIN  153 (720)
T ss_pred             cccHHHHHHHHHhcCEEEEEEecCCCCCccHHH-HH-HHHHHc--CCCEEEEEEChhcccc
Confidence            998777777899999999999998754333321 23 223233  7899999999998643

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>KOG1490|consensus

Probab=99.42  E-value=6.2e-13  Score=105.27  Aligned_cols=161  Identities=16%  Similarity=0.067  Sum_probs=111.6

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCC-CCCCcCccccccceeEEECCEEEEEEEEEcCCCccc----cccc-----ccCc
Q psy15714         23 ALKVTTVGDGMVGKTCLLITHTENKF-PTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY----ERLR-----PMSY   92 (205)
Q Consensus        23 ~~ki~v~G~~~~GKstli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~----~~~~-----~~~~   92 (205)
                      .-.++|+|-|++|||||++....... .++|..|+..-+.....+.  -..+++.||||--..    +...     ....
T Consensus       168 trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dyk--YlrwQViDTPGILD~plEdrN~IEmqsITALA  245 (620)
T KOG1490|consen  168 TRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYK--YLRWQVIDTPGILDRPEEDRNIIEMQIITALA  245 (620)
T ss_pred             cCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhh--eeeeeecCCccccCcchhhhhHHHHHHHHHHH
Confidence            34789999999999999998887655 4566666654443333222  256888899994221    1111     1223


Q ss_pred             CCCcEEEEEEECCCc--chHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHH--HHHHHHHH
Q psy15714         93 PNTDCFLLCFSIGST--SSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTS--QGKKMRRK  168 (205)
Q Consensus        93 ~~~~~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  168 (205)
                      +--.+|+|+.|++..  .|+.... .+...++..+.|.|+|+|+||+|+....            .++.+  +..+....
T Consensus       246 HLraaVLYfmDLSe~CGySva~Qv-kLfhsIKpLFaNK~~IlvlNK~D~m~~e------------dL~~~~~~ll~~~~~  312 (620)
T KOG1490|consen  246 HLRSAVLYFMDLSEMCGYSVAAQV-KLYHSIKPLFANKVTILVLNKIDAMRPE------------DLDQKNQELLQTIID  312 (620)
T ss_pred             HhhhhheeeeechhhhCCCHHHHH-HHHHHhHHHhcCCceEEEeecccccCcc------------ccCHHHHHHHHHHHh
Confidence            445778999999865  4666655 6778888888899999999999998765            33322  33334444


Q ss_pred             cCCceEEEcccCCCCCHHHHHHHHHHHHHh
Q psy15714        169 IKAAEYLECSAKLNEGLDQVFIAAVRSAVK  198 (205)
Q Consensus       169 ~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  198 (205)
                      .+..+++++|+.+.+|+-++.......++.
T Consensus       313 ~~~v~v~~tS~~~eegVm~Vrt~ACe~LLa  342 (620)
T KOG1490|consen  313 DGNVKVVQTSCVQEEGVMDVRTTACEALLA  342 (620)
T ss_pred             ccCceEEEecccchhceeeHHHHHHHHHHH
Confidence            555559999999999998888777776655

>KOG3905|consensus

Probab=99.39  E-value=1.1e-11  Score=93.50  Aligned_cols=170  Identities=20%  Similarity=0.189  Sum_probs=114.7

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccc---eeEEECCEEEEEEEEEcCCCcccccccccCcCC----C
Q psy15714         23 ALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYP---DTITVDNKTYDVTLWDTAGQEDYERLRPMSYPN----T   95 (205)
Q Consensus        23 ~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~----~   95 (205)
                      --.|+|+|..++|||||+.++.+.+-.   .+-.+-.|.   ..-...+...++.+|=+-|.--+..+....+..    -
T Consensus        52 gk~VlvlGdn~sGKtsLi~klqg~e~~---KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~ae  128 (473)
T KOG3905|consen   52 GKNVLVLGDNGSGKTSLISKLQGSETV---KKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAE  128 (473)
T ss_pred             CCeEEEEccCCCchhHHHHHhhccccc---CCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccc
Confidence            347999999999999999999876621   222222221   111223445678899998887666665554444    3


Q ss_pred             cEEEEEEECCCcchHHHHHHHHHHHHhhhCC-------------------------------------------------
Q psy15714         96 DCFLLCFSIGSTSSYENILSKWYPELKHHCP-------------------------------------------------  126 (205)
Q Consensus        96 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-------------------------------------------------  126 (205)
                      -++|++.|+++++.+-+..+.|...+.++..                                                 
T Consensus       129 tlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~  208 (473)
T KOG3905|consen  129 TLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHV  208 (473)
T ss_pred             eEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCcccccc
Confidence            5688899999997766655577666642220                                                 


Q ss_pred             -------------CCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCCCCCHHHHHHHHH
Q psy15714        127 -------------KVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAV  193 (205)
Q Consensus       127 -------------~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~  193 (205)
                                   .+|++||.+|+|...--.... ......-.....+.+.|+-++|.. ++.+|++..-|++-++.+|+
T Consensus       209 llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~-eyrDehfdfiq~~lRkFCLr~Gaa-LiyTSvKE~KNidllyKYiv  286 (473)
T KOG3905|consen  209 LLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEH-EYRDEHFDFIQSHLRKFCLRYGAA-LIYTSVKETKNIDLLYKYIV  286 (473)
T ss_pred             ccccCCcchhhcCCCcEEEEEeccchhhHhhhcc-hhhHHHHHHHHHHHHHHHHHcCce-eEEeecccccchHHHHHHHH
Confidence                         257999999999843211000 000011123456789999999999 99999999999999999999


Q ss_pred             HHHH
Q psy15714        194 RSAV  197 (205)
Q Consensus       194 ~~~~  197 (205)
                      +...
T Consensus       287 hr~y  290 (473)
T KOG3905|consen  287 HRSY  290 (473)
T ss_pred             HHhc
Confidence            8754

>KOG0705|consensus

Probab=99.38  E-value=1.7e-12  Score=103.72  Aligned_cols=165  Identities=19%  Similarity=0.348  Sum_probs=130.2

Q ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEE
Q psy15714         20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFL   99 (205)
Q Consensus        20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   99 (205)
                      .-.++|+.|+|..++|||+|+++|+.+.|.+... ..+..+.+.+.++++...+.+.|-+|+..     ..|....|++|
T Consensus        27 sipelk~givg~~~sgktalvhr~ltgty~~~e~-~e~~~~kkE~vv~gqs~lLlirdeg~~~~-----aQft~wvdavI  100 (749)
T KOG0705|consen   27 SIPELKLGIVGTSQSGKTALVHRYLTGTYTQDES-PEGGRFKKEVVVDGQSHLLLIRDEGGHPD-----AQFCQWVDAVV  100 (749)
T ss_pred             ccchhheeeeecccCCceeeeeeeccceeccccC-CcCccceeeEEeeccceEeeeecccCCch-----hhhhhhccceE
Confidence            3467899999999999999999999999977644 45667777888889888899999988433     35788999999


Q ss_pred             EEEECCCcchHHHHHHHHHHHHhhhC--CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEc
Q psy15714        100 LCFSIGSTSSYENILSKWYPELKHHC--PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLEC  177 (205)
Q Consensus       100 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (205)
                      |||.+.+..+++.+. .+...+..+.  ..+|+++++++.-.....+          +.+...+++.++....-..+|++
T Consensus       101 fvf~~~d~~s~q~v~-~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~----------rv~~da~~r~l~~~~krcsy~et  169 (749)
T KOG0705|consen  101 FVFSVEDEQSFQAVQ-ALAHEMSSYRNISDLPLILVGTQDHISAKRP----------RVITDDRARQLSAQMKRCSYYET  169 (749)
T ss_pred             EEEEeccccCHHHHH-HHHhhcccccccccchHHhhcCcchhhcccc----------cccchHHHHHHHHhcCccceeec
Confidence            999999999999986 4555554333  6789999998765443332          25666777777666655559999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHhhcc
Q psy15714        178 SAKLNEGLDQVFIAAVRSAVKKQD  201 (205)
Q Consensus       178 Sa~~~~~i~~~~~~i~~~~~~~~~  201 (205)
                      ++.+|.++...|..+...++..++
T Consensus       170 ~atyGlnv~rvf~~~~~k~i~~~~  193 (749)
T KOG0705|consen  170 CATYGLNVERVFQEVAQKIVQLRK  193 (749)
T ss_pred             chhhhhhHHHHHHHHHHHHHHHHh
Confidence            999999999999999988876544

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=99.37  E-value=5.2e-12  Score=98.76  Aligned_cols=174  Identities=15%  Similarity=0.114  Sum_probs=85.6

Q ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCC-CCcCc--cccccce-eEEECCEEEEEEEEEcCCCccccc-----cccc
Q psy15714         20 VHKALKVTTVGDGMVGKTCLLITHTENKFPT-DYVPT--VFDNYPD-TITVDNKTYDVTLWDTAGQEDYER-----LRPM   90 (205)
Q Consensus        20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~-~~~~t--~~~~~~~-~~~~~~~~~~~~i~D~~g~~~~~~-----~~~~   90 (205)
                      ....++|+|+|.+|+|||||||++.+-.-.+ ...++  ..+.... .+.. .....+.+||+||-....-     +...
T Consensus        32 ~~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~-p~~pnv~lWDlPG~gt~~f~~~~Yl~~~  110 (376)
T PF05049_consen   32 DNAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPH-PKFPNVTLWDLPGIGTPNFPPEEYLKEV  110 (376)
T ss_dssp             HH--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE--SS-TTEEEEEE--GGGSS--HHHHHHHT
T ss_pred             hcCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCC-CCCCCCeEEeCCCCCCCCCCHHHHHHHc
Confidence            3467899999999999999999998633221 11221  1222222 2222 2233599999999532111     1123


Q ss_pred             CcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHH--
Q psy15714         91 SYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRK--  168 (205)
Q Consensus        91 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  168 (205)
                      -+...|.+|++.+    ..|....-.+...+.+.  +.|+.+|-+|+|..-............. .-..++.++.+..  
T Consensus       111 ~~~~yD~fiii~s----~rf~~ndv~La~~i~~~--gK~fyfVRTKvD~Dl~~~~~~~p~~f~~-e~~L~~IR~~c~~~L  183 (376)
T PF05049_consen  111 KFYRYDFFIIISS----ERFTENDVQLAKEIQRM--GKKFYFVRTKVDSDLYNERRRKPRTFNE-EKLLQEIRENCLENL  183 (376)
T ss_dssp             TGGG-SEEEEEES----SS--HHHHHHHHHHHHT--T-EEEEEE--HHHHHHHHHCC-STT--H-HTHHHHHHHHHHHHH
T ss_pred             cccccCEEEEEeC----CCCchhhHHHHHHHHHc--CCcEEEEEecccccHhhhhccCCcccCH-HHHHHHHHHHHHHHH
Confidence            4677898887664    23434333566777777  8999999999996211110000000000 1112222222211  


Q ss_pred             --c--CCceEEEcccCCC--CCHHHHHHHHHHHHHhhcc
Q psy15714        169 --I--KAAEYLECSAKLN--EGLDQVFIAAVRSAVKKQD  201 (205)
Q Consensus       169 --~--~~~~~~~~Sa~~~--~~i~~~~~~i~~~~~~~~~  201 (205)
                        .  ..+++|.+|+.+-  +++..+.+.+.+.+...++
T Consensus       184 ~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~Kr  222 (376)
T PF05049_consen  184 QKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHKR  222 (376)
T ss_dssp             HCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGGH
T ss_pred             HHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHHH
Confidence              1  2345899999864  5688888887776555443

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=99.36  E-value=7.8e-12  Score=95.36  Aligned_cols=120  Identities=13%  Similarity=0.127  Sum_probs=72.2

Q ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCC--CCCcCccccccceeEEECCEEEEEEEEEcCCCcccccc-------ccc
Q psy15714         20 VHKALKVTTVGDGMVGKTCLLITHTENKFP--TDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERL-------RPM   90 (205)
Q Consensus        20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-------~~~   90 (205)
                      ....++|+++|.+|+||||++|++++....  ..+.++...........++  .++.++||||.......       ...
T Consensus        35 ~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G--~~l~VIDTPGL~d~~~~~e~~~~~ik~  112 (313)
T TIGR00991        35 DVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAG--FTLNIIDTPGLIEGGYINDQAVNIIKR  112 (313)
T ss_pred             cccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEECCCCCchHHHHHHHHHHHHH
Confidence            457899999999999999999999987642  2222211111111223455  67999999996543211       111


Q ss_pred             Cc--CCCcEEEEEEECCCcchHHHHHHHHHHHHhhhC---CCCCEEEEeeCcccccC
Q psy15714         91 SY--PNTDCFLLCFSIGSTSSYENILSKWYPELKHHC---PKVPIILVGTKADLRSE  142 (205)
Q Consensus        91 ~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~  142 (205)
                      ++  ...|+++||..++.. .+......++..+...+   --.+++|+.|+.|....
T Consensus       113 ~l~~~g~DvVLyV~rLD~~-R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~p  168 (313)
T TIGR00991       113 FLLGKTIDVLLYVDRLDAY-RVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPP  168 (313)
T ss_pred             HhhcCCCCEEEEEeccCcc-cCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCC
Confidence            11  268999999665432 12222123444444433   13579999999997643

>KOG3887|consensus

Probab=99.36  E-value=8.5e-12  Score=90.52  Aligned_cols=170  Identities=13%  Similarity=0.202  Sum_probs=105.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCccc-ccc--cccCcCCCcEEEE
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY-ERL--RPMSYPNTDCFLL  100 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-~~~--~~~~~~~~~~~i~  100 (205)
                      .+|+++|...+||||+....+....+..+....-+.....-.+.+.-+.+++||+||+..+ ...  ....++++.+++|
T Consensus        28 p~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALif  107 (347)
T KOG3887|consen   28 PRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALIF  107 (347)
T ss_pred             ceEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEEE
Confidence            4699999999999999876666554332222111111111123345678999999998764 332  3457899999999


Q ss_pred             EEECCCcchHHHHHHHHHHHHhhhC---CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHH-HHHHcCCceEEE
Q psy15714        101 CFSIGSTSSYENILSKWYPELKHHC---PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKK-MRRKIKAAEYLE  176 (205)
Q Consensus       101 v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  176 (205)
                      |+|+.+.  +.+....+...+.+..   +++.+=|+..|.|...+....+.+..-.  +.+.++... -....... ++.
T Consensus       108 vIDaQdd--y~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~--qr~~d~l~d~gle~v~vs-f~L  182 (347)
T KOG3887|consen  108 VIDAQDD--YMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIH--QRTNDELADAGLEKVQVS-FYL  182 (347)
T ss_pred             EEechHH--HHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHH--HHhhHHHHhhhhccceEE-EEE
Confidence            9998653  3333335555555443   7899999999999887766544432222  112222211 11222222 444


Q ss_pred             cccCCCCCHHHHHHHHHHHHHhh
Q psy15714        177 CSAKLNEGLDQVFIAAVRSAVKK  199 (205)
Q Consensus       177 ~Sa~~~~~i~~~~~~i~~~~~~~  199 (205)
                      +| .....|-|+|..+++.++.+
T Consensus       183 TS-IyDHSIfEAFSkvVQkLipq  204 (347)
T KOG3887|consen  183 TS-IYDHSIFEAFSKVVQKLIPQ  204 (347)
T ss_pred             ee-ecchHHHHHHHHHHHHHhhh
Confidence            54 55678999999999988764

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=99.34  E-value=1e-11  Score=93.16  Aligned_cols=122  Identities=15%  Similarity=0.132  Sum_probs=74.4

Q ss_pred             ccceeeEEEEECCCCCCHHHHHHHHhcCCCCC--CCcCccccccceeEEECCEEEEEEEEEcCCCccccc---c------
Q psy15714         19 SVHKALKVTTVGDGMVGKTCLLITHTENKFPT--DYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYER---L------   87 (205)
Q Consensus        19 ~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---~------   87 (205)
                      .....++|+|+|.+|+|||||+|++++.....  .+.+++..........++  ..+.+|||||-.....   .      
T Consensus        27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g--~~i~vIDTPGl~~~~~~~~~~~~~~~  104 (249)
T cd01853          27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDG--FKLNIIDTPGLLESVMDQRVNRKILS  104 (249)
T ss_pred             hccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCcCcchhhHHHHHHHHH
Confidence            45677999999999999999999999876432  222222211122233445  5689999999654310   0      


Q ss_pred             -cccCc--CCCcEEEEEEECCCc-chHHHHHHHHHHHHhhhCC---CCCEEEEeeCcccccCch
Q psy15714         88 -RPMSY--PNTDCFLLCFSIGST-SSYENILSKWYPELKHHCP---KVPIILVGTKADLRSENK  144 (205)
Q Consensus        88 -~~~~~--~~~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~---~~p~ivv~nK~Dl~~~~~  144 (205)
                       ...++  ...++++||..++.. ....+  ..++..+.....   -.++++|.||+|...+..
T Consensus       105 ~I~~~l~~~~idvIL~V~rlD~~r~~~~d--~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~~  166 (249)
T cd01853         105 SIKRYLKKKTPDVVLYVDRLDMYRRDYLD--LPLLRAITDSFGPSIWRNAIVVLTHAASSPPDG  166 (249)
T ss_pred             HHHHHHhccCCCEEEEEEcCCCCCCCHHH--HHHHHHHHHHhChhhHhCEEEEEeCCccCCCCC
Confidence             11123  257888888766543 22222  244444544331   257999999999875543

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=99.34  E-value=2.4e-11  Score=98.28  Aligned_cols=172  Identities=17%  Similarity=0.185  Sum_probs=113.7

Q ss_pred             eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccccee-EEE--CCEEEEEEEEEcCCCcccccccccCcCC----
Q psy15714         22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDT-ITV--DNKTYDVTLWDTAGQEDYERLRPMSYPN----   94 (205)
Q Consensus        22 ~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~-~~~--~~~~~~~~i~D~~g~~~~~~~~~~~~~~----   94 (205)
                      ..-.|+|+|..++|||||+.+|.+..   .+.++.+-.|... +.-  .+....+.+|-+.|...+..+....+..    
T Consensus        24 ~~k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~  100 (472)
T PF05783_consen   24 SEKSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLP  100 (472)
T ss_pred             CCceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCccccc
Confidence            34589999999999999999987543   2334445444321 211  1234578999999877777776655554    


Q ss_pred             CcEEEEEEECCCcchHHHHHHHHHHHHh-------------------------hhC------------------------
Q psy15714         95 TDCFLLCFSIGSTSSYENILSKWYPELK-------------------------HHC------------------------  125 (205)
Q Consensus        95 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~-------------------------~~~------------------------  125 (205)
                      --++|+|.|.+.++.+-+-...|+..++                         .+.                        
T Consensus       101 ~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~  180 (472)
T PF05783_consen  101 NTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDE  180 (472)
T ss_pred             ceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCcccccccccccccc
Confidence            2468889999988766543334444331                         000                        


Q ss_pred             --------------CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCCCCCHHHHHHH
Q psy15714        126 --------------PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIA  191 (205)
Q Consensus       126 --------------~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  191 (205)
                                    -.+|++||.+|+|....-..... -....-....+..+.++-.+|+. ++.+|++...+++-++.+
T Consensus       181 ~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~-~~~e~~DfIqq~LR~~cL~yGAs-L~yts~~~~~n~~~L~~y  258 (472)
T PF05783_consen  181 SVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETD-WKEEHFDFIQQYLRTFCLKYGAS-LIYTSVKEEKNLDLLYKY  258 (472)
T ss_pred             cccCCCCCcccccccCcceEEEEecccHHHHHhhhcc-cchhhHHHHHHHHHHHHHhcCCe-EEEeeccccccHHHHHHH
Confidence                          02699999999997642111100 00000023455689999999999 899999999999999999


Q ss_pred             HHHHHHh
Q psy15714        192 AVRSAVK  198 (205)
Q Consensus       192 i~~~~~~  198 (205)
                      |.+.+..
T Consensus       259 i~h~l~~  265 (472)
T PF05783_consen  259 ILHRLYG  265 (472)
T ss_pred             HHHHhcc
Confidence            8887654

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=99.33  E-value=1.3e-11  Score=95.73  Aligned_cols=107  Identities=24%  Similarity=0.273  Sum_probs=66.4

Q ss_pred             EEEEEEEEcCCCcccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhh
Q psy15714         70 TYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKK  149 (205)
Q Consensus        70 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~  149 (205)
                      .+.+.|.||+|...-...   ....+|.++++.+......+.....   ..++     ..-++|+||+|+.......   
T Consensus       148 g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~---gi~E-----~aDIiVVNKaDl~~~~~a~---  213 (332)
T PRK09435        148 GYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKK---GIME-----LADLIVINKADGDNKTAAR---  213 (332)
T ss_pred             CCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHh---hhhh-----hhheEEeehhcccchhHHH---
Confidence            467889999997633321   4677999999976444444443321   1222     2238999999987643110   


Q ss_pred             hhhccccccHHHHHHHHHHc------CCceEEEcccCCCCCHHHHHHHHHHHHH
Q psy15714        150 KAAEVDLVSTSQGKKMRRKI------KAAEYLECSAKLNEGLDQVFIAAVRSAV  197 (205)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~Sa~~~~~i~~~~~~i~~~~~  197 (205)
                             ....+.+......      ...+++.+||+++.|++++++.+.+.+.
T Consensus       214 -------~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~  260 (332)
T PRK09435        214 -------RAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA  260 (332)
T ss_pred             -------HHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence                   1111222222111      1145999999999999999999988754

>cd01882 BMS1 Bms1

Probab=99.33  E-value=3.4e-11  Score=89.38  Aligned_cols=145  Identities=21%  Similarity=0.156  Sum_probs=85.7

Q ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEE
Q psy15714         20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFL   99 (205)
Q Consensus        20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   99 (205)
                      ......|+++|.+|+|||||++.+....-........+.   ..+ ......++.++|+||..  ..+. ..+..+|+++
T Consensus        36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~---i~i-~~~~~~~i~~vDtPg~~--~~~l-~~ak~aDvVl  108 (225)
T cd01882          36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP---ITV-VTGKKRRLTFIECPNDI--NAMI-DIAKVADLVL  108 (225)
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc---EEE-EecCCceEEEEeCCchH--HHHH-HHHHhcCEEE
Confidence            345678999999999999999988864211111111111   111 11234567888999864  2222 2467899999


Q ss_pred             EEEECCCcchHHHHHHHHHHHHhhhCCCCCEE-EEeeCcccccCchhhhhhhhhccccccHHHHHH-HH-HHcCCceEEE
Q psy15714        100 LCFSIGSTSSYENILSKWYPELKHHCPKVPII-LVGTKADLRSENKTIDKKKAAEVDLVSTSQGKK-MR-RKIKAAEYLE  176 (205)
Q Consensus       100 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~  176 (205)
                      +++|++........  .++..+...  +.|.+ +|+||.|+........        .+ ..+.+. +. +.....+++.
T Consensus       109 lviDa~~~~~~~~~--~i~~~l~~~--g~p~vi~VvnK~D~~~~~~~~~--------~~-~~~l~~~~~~~~~~~~ki~~  175 (225)
T cd01882         109 LLIDASFGFEMETF--EFLNILQVH--GFPRVMGVLTHLDLFKKNKTLR--------KT-KKRLKHRFWTEVYQGAKLFY  175 (225)
T ss_pred             EEEecCcCCCHHHH--HHHHHHHHc--CCCeEEEEEeccccCCcHHHHH--------HH-HHHHHHHHHHhhCCCCcEEE
Confidence            99998865443332  455555554  67854 5999999874321100        11 112222 22 2234456999


Q ss_pred             cccCCCCC
Q psy15714        177 CSAKLNEG  184 (205)
Q Consensus       177 ~Sa~~~~~  184 (205)
                      +||++.-.
T Consensus       176 iSa~~~~~  183 (225)
T cd01882         176 LSGIVHGR  183 (225)
T ss_pred             EeeccCCC
Confidence            99998743

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=99.32  E-value=5.7e-11  Score=93.19  Aligned_cols=156  Identities=13%  Similarity=0.177  Sum_probs=95.8

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcC----CCC-------------CCCc----Ccccccc-c-eeEE---ECCEEEEEE
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTEN----KFP-------------TDYV----PTVFDNY-P-DTIT---VDNKTYDVT   74 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~----~~~-------------~~~~----~t~~~~~-~-~~~~---~~~~~~~~~   74 (205)
                      ...+.|.|+|+.++|||||+++|.+.    ...             +...    .|+...+ + +.+.   .++...++.
T Consensus        15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vr   94 (492)
T TIGR02836        15 QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVR   94 (492)
T ss_pred             CCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEE
Confidence            35688999999999999999999987    222             1111    1222222 1 1122   245667899


Q ss_pred             EEEcCCCcc--------ccc---c------------------cccCcC-CCcEEEEEE-ECC----CcchHHHHHHHHHH
Q psy15714         75 LWDTAGQED--------YER---L------------------RPMSYP-NTDCFLLCF-SIG----STSSYENILSKWYP  119 (205)
Q Consensus        75 i~D~~g~~~--------~~~---~------------------~~~~~~-~~~~~i~v~-d~~----~~~s~~~~~~~~~~  119 (205)
                      +.||+|-..        -..   .                  .+..+. .+++.++|. |.+    .++.+......|+.
T Consensus        95 lIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~  174 (492)
T TIGR02836        95 LVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIE  174 (492)
T ss_pred             EEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHH
Confidence            999999221        111   0                  112344 788988888 654    23456666668999


Q ss_pred             HHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccC--CCCCHHHHHHHHH
Q psy15714        120 ELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAK--LNEGLDQVFIAAV  193 (205)
Q Consensus       120 ~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~--~~~~i~~~~~~i~  193 (205)
                      .++..  ++|+++++||.|-...              .+.+....+...++.. ++.+|+.  ..+.|..+++.++
T Consensus       175 eLk~~--~kPfiivlN~~dp~~~--------------et~~l~~~l~eky~vp-vl~v~c~~l~~~DI~~il~~vL  233 (492)
T TIGR02836       175 ELKEL--NKPFIILLNSTHPYHP--------------ETEALRQELEEKYDVP-VLAMDVESMRESDILSVLEEVL  233 (492)
T ss_pred             HHHhc--CCCEEEEEECcCCCCc--------------hhHHHHHHHHHHhCCc-eEEEEHHHcCHHHHHHHHHHHH
Confidence            99988  9999999999994321              1233344555555644 5555554  3345555555544

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=99.31  E-value=6.9e-11  Score=86.98  Aligned_cols=165  Identities=18%  Similarity=0.155  Sum_probs=93.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCc---CccccccceeEEECCEEEEEEEEEcCCCcccc--------ccc---c
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTENKFPTDYV---PTVFDNYPDTITVDNKTYDVTLWDTAGQEDYE--------RLR---P   89 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~~~~~~~~---~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~--------~~~---~   89 (205)
                      ++|+++|..|+||||++|.+++........   +.+..........++  ..+.++||||-....        .+.   .
T Consensus         1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~   78 (212)
T PF04548_consen    1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLS   78 (212)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence            589999999999999999999876533221   111222233446677  557889999932211        111   1


Q ss_pred             cCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhC-C--CCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHH
Q psy15714         90 MSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-P--KVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMR  166 (205)
Q Consensus        90 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~--~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (205)
                      ...++.+++++|+..+ +-+-.+.  ..+..+...+ +  -..++||.|..|........+..   .  .-.....+.+.
T Consensus        79 ~~~~g~ha~llVi~~~-r~t~~~~--~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l---~--~~~~~~l~~li  150 (212)
T PF04548_consen   79 LCSPGPHAFLLVIPLG-RFTEEDR--EVLELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYL---K--KESNEALQELI  150 (212)
T ss_dssp             HTTT-ESEEEEEEETT-B-SHHHH--HHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHH---H--HHHHHHHHHHH
T ss_pred             hccCCCeEEEEEEecC-cchHHHH--HHHHHHHHHccHHHHhHhhHHhhhccccccccHHHHH---h--ccCchhHhHHh
Confidence            2356799999999988 3332222  2333333322 1  24588889988876554211100   0  01123466777


Q ss_pred             HHcCCceEEEcccC------CCCCHHHHHHHHHHHHHhh
Q psy15714        167 RKIKAAEYLECSAK------LNEGLDQVFIAAVRSAVKK  199 (205)
Q Consensus       167 ~~~~~~~~~~~Sa~------~~~~i~~~~~~i~~~~~~~  199 (205)
                      +..+.. |+..+..      ....+.+++..|-+.+...
T Consensus       151 ~~c~~R-~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n  188 (212)
T PF04548_consen  151 EKCGGR-YHVFNNKTKDKEKDESQVSELLEKIEEMVQEN  188 (212)
T ss_dssp             HHTTTC-EEECCTTHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hhcCCE-EEEEeccccchhhhHHHHHHHHHHHHHHHHHc
Confidence            777877 7776666      3356777777776665554

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>KOG0461|consensus

Probab=99.29  E-value=7.6e-11  Score=89.84  Aligned_cols=168  Identities=19%  Similarity=0.112  Sum_probs=104.5

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCC----CCcCcc-cccc---ceeEE-------ECCEEEEEEEEEcCCCcccc
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTENKFPT----DYVPTV-FDNY---PDTIT-------VDNKTYDVTLWDTAGQEDYE   85 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~----~~~~t~-~~~~---~~~~~-------~~~~~~~~~i~D~~g~~~~~   85 (205)
                      ...+++.++|.-.+|||||.+++..-....    ...++. +...   -....       -.+...++++.|+|||...-
T Consensus         5 p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLI   84 (522)
T KOG0461|consen    5 PSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLI   84 (522)
T ss_pred             CceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHH
Confidence            345999999999999999999988533221    111111 0000   00111       13566889999999998765


Q ss_pred             cccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHH
Q psy15714         86 RLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKM  165 (205)
Q Consensus        86 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (205)
                      .......+-.|..++|+|+.....-+.+.-.++..+.    ....+||+||+|...+..+..         -....+..+
T Consensus        85 RtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~----c~klvvvinkid~lpE~qr~s---------ki~k~~kk~  151 (522)
T KOG0461|consen   85 RTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELL----CKKLVVVINKIDVLPENQRAS---------KIEKSAKKV  151 (522)
T ss_pred             HHHHhhhheeeeeeEEEehhcccccccchhhhhhhhh----ccceEEEEeccccccchhhhh---------HHHHHHHHH
Confidence            5444556678999999999876544443212222222    456788889988766542211         111122222


Q ss_pred             HHH------cCCceEEEcccCCC----CCHHHHHHHHHHHHHhhcc
Q psy15714        166 RRK------IKAAEYLECSAKLN----EGLDQVFIAAVRSAVKKQD  201 (205)
Q Consensus       166 ~~~------~~~~~~~~~Sa~~~----~~i~~~~~~i~~~~~~~~~  201 (205)
                      .+-      .+..|++++||..|    ++|.++.+.+-+.+...++
T Consensus       152 ~KtLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~R  197 (522)
T KOG0461|consen  152 RKTLESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEPKR  197 (522)
T ss_pred             HHHHHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCCCc
Confidence            222      24567999999999    7888888888887776554

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=99.29  E-value=6.1e-11  Score=87.01  Aligned_cols=154  Identities=18%  Similarity=0.123  Sum_probs=83.5

Q ss_pred             ccceeeEEEEECCCCCCHHHHHHHHhcCCCC--------C----CCcCcccccc-ceeEEE-CC----------------
Q psy15714         19 SVHKALKVTTVGDGMVGKTCLLITHTENKFP--------T----DYVPTVFDNY-PDTITV-DN----------------   68 (205)
Q Consensus        19 ~~~~~~ki~v~G~~~~GKstli~~~~~~~~~--------~----~~~~t~~~~~-~~~~~~-~~----------------   68 (205)
                      .......|+++|+.|+|||||++++......        .    .......... ...+.. ++                
T Consensus        18 ~~~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~   97 (207)
T TIGR00073        18 DKHGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALED   97 (207)
T ss_pred             hhcCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHH
Confidence            3445778999999999999999887743100        0    0000000000 001111 11                


Q ss_pred             ---EEEEEEEEEcCCCcccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchh
Q psy15714         69 ---KTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKT  145 (205)
Q Consensus        69 ---~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~  145 (205)
                         ..+.+.|.++.|.-....   .+....+..+.|+|+.+......      ......  ..|.++++||+|+....  
T Consensus        98 ~~~~~~d~IiIEt~G~l~~~~---~~~~~~~~~i~Vvd~~~~d~~~~------~~~~~~--~~a~iiv~NK~Dl~~~~--  164 (207)
T TIGR00073        98 LPLDDIDLLFIENVGNLVCPA---DFDLGEHMRVVLLSVTEGDDKPL------KYPGMF--KEADLIVINKADLAEAV--  164 (207)
T ss_pred             hccCCCCEEEEecCCCcCCCc---ccccccCeEEEEEecCcccchhh------hhHhHH--hhCCEEEEEHHHccccc--
Confidence               124566777777211111   11123445566777765432111      111111  56789999999997532  


Q ss_pred             hhhhhhhccccccHHHHHHHHHHc-CCceEEEcccCCCCCHHHHHHHHHHH
Q psy15714        146 IDKKKAAEVDLVSTSQGKKMRRKI-KAAEYLECSAKLNEGLDQVFIAAVRS  195 (205)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~~~~~i~~~  195 (205)
                                .....+.....+.. ...+++++||++++|++++|+++.+.
T Consensus       165 ----------~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~  205 (207)
T TIGR00073       165 ----------GFDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ  205 (207)
T ss_pred             ----------hhhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence                      11122233333332 33459999999999999999999764

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>KOG3886|consensus

Probab=99.28  E-value=1.4e-11  Score=88.80  Aligned_cols=119  Identities=18%  Similarity=0.258  Sum_probs=78.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCC-CCcCcccccc-ceeEEECCEEEEEEEEEcCCCccc-----ccccccCcCCCc
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTENKFPT-DYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDY-----ERLRPMSYPNTD   96 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~~~~~-~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~-----~~~~~~~~~~~~   96 (205)
                      -||+++|..|+|||++=..++.+.... ...++...++ ...+.+-| +..+.+||++|++.+     .......+.+.+
T Consensus         5 kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflG-nl~LnlwDcGgqe~fmen~~~~q~d~iF~nV~   83 (295)
T KOG3886|consen    5 KKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLG-NLVLNLWDCGGQEEFMENYLSSQEDNIFRNVQ   83 (295)
T ss_pred             ceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhh-hheeehhccCCcHHHHHHHHhhcchhhheehe
Confidence            489999999999999865555332211 1111111111 11222222 256999999999843     234567899999


Q ss_pred             EEEEEEECCCcchHHHHHHHH---HHHHhhhCCCCCEEEEeeCcccccCch
Q psy15714         97 CFLLCFSIGSTSSYENILSKW---YPELKHHCPKVPIILVGTKADLRSENK  144 (205)
Q Consensus        97 ~~i~v~d~~~~~s~~~~~~~~---~~~~~~~~~~~p~ivv~nK~Dl~~~~~  144 (205)
                      ++++|||++.++--.++. +.   +..+.++.|...+.+..+|.|+.....
T Consensus        84 vli~vFDves~e~~~D~~-~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d~  133 (295)
T KOG3886|consen   84 VLIYVFDVESREMEKDFH-YYQKCLEALLQNSPEAKIFCLLHKMDLVQEDA  133 (295)
T ss_pred             eeeeeeeccchhhhhhHH-HHHHHHHHHHhcCCcceEEEEEeechhcccch
Confidence            999999999886555554 33   455556668888999999999987653

>PRK07560 elongation factor EF-2; Reviewed

Probab=99.27  E-value=4.8e-11  Score=102.42  Aligned_cols=116  Identities=14%  Similarity=0.048  Sum_probs=76.3

Q ss_pred             eeeEEEEECCCCCCHHHHHHHHhcC--CCCCCCc---------Ccc---cccc-ce--e--EEECCEEEEEEEEEcCCCc
Q psy15714         22 KALKVTTVGDGMVGKTCLLITHTEN--KFPTDYV---------PTV---FDNY-PD--T--ITVDNKTYDVTLWDTAGQE   82 (205)
Q Consensus        22 ~~~ki~v~G~~~~GKstli~~~~~~--~~~~~~~---------~t~---~~~~-~~--~--~~~~~~~~~~~i~D~~g~~   82 (205)
                      +--+|+++|+.++|||||+.+++..  .......         +..   +... ..  .  ...++..+.+.++||||+.
T Consensus        19 ~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~   98 (731)
T PRK07560         19 QIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHV   98 (731)
T ss_pred             cccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCcc
Confidence            4447999999999999999998742  2111000         000   0000 00  1  1123446788999999999


Q ss_pred             ccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCccccc
Q psy15714         83 DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS  141 (205)
Q Consensus        83 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  141 (205)
                      +|.......+..+|++|+|+|+.......... .|.. ....  +.|.++++||+|+..
T Consensus        99 df~~~~~~~l~~~D~avlVvda~~g~~~~t~~-~~~~-~~~~--~~~~iv~iNK~D~~~  153 (731)
T PRK07560         99 DFGGDVTRAMRAVDGAIVVVDAVEGVMPQTET-VLRQ-ALRE--RVKPVLFINKVDRLI  153 (731)
T ss_pred             ChHHHHHHHHHhcCEEEEEEECCCCCCccHHH-HHHH-HHHc--CCCeEEEEECchhhc
Confidence            88777777889999999999988764433322 3332 2333  678899999999864

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=99.26  E-value=1.2e-10  Score=88.83  Aligned_cols=119  Identities=17%  Similarity=0.192  Sum_probs=69.1

Q ss_pred             eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCc----------Ccccc-ccceeEEECCEEEEEEEEEcCCCcc-------
Q psy15714         22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYV----------PTVFD-NYPDTITVDNKTYDVTLWDTAGQED-------   83 (205)
Q Consensus        22 ~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~----------~t~~~-~~~~~~~~~~~~~~~~i~D~~g~~~-------   83 (205)
                      -.++|+|+|..|+|||||++.|++........          .+... .....+.-++..+.+.++||||-..       
T Consensus         3 ~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~   82 (281)
T PF00735_consen    3 FNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDC   82 (281)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhh
Confidence            46899999999999999999999875533310          11111 1122344578889999999999111       


Q ss_pred             -----------ccc-------ccccCc--CCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCc
Q psy15714         84 -----------YER-------LRPMSY--PNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSEN  143 (205)
Q Consensus        84 -----------~~~-------~~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~  143 (205)
                                 |..       ..+..+  ...++++|.++++.. .+..+   =+..+++....+++|.|+.|+|.....
T Consensus        83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~-~L~~~---Di~~mk~Ls~~vNvIPvIaKaD~lt~~  158 (281)
T PF00735_consen   83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGH-GLKPL---DIEFMKRLSKRVNVIPVIAKADTLTPE  158 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSS-SS-HH---HHHHHHHHTTTSEEEEEESTGGGS-HH
T ss_pred             hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCc-cchHH---HHHHHHHhcccccEEeEEecccccCHH
Confidence                       110       011112  336778888887643 22222   223455555579999999999987654


Q ss_pred             h
Q psy15714        144 K  144 (205)
Q Consensus       144 ~  144 (205)
                      .
T Consensus       159 e  159 (281)
T PF00735_consen  159 E  159 (281)
T ss_dssp             H
T ss_pred             H
Confidence            3

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=99.24  E-value=1.5e-10  Score=91.32  Aligned_cols=159  Identities=13%  Similarity=0.049  Sum_probs=105.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcC--CCCCCCc-------Ccc-----cccc-ceeEEECCEEEEEEEEEcCCCccccccc
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTEN--KFPTDYV-------PTV-----FDNY-PDTITVDNKTYDVTLWDTAGQEDYERLR   88 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~--~~~~~~~-------~t~-----~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~   88 (205)
                      -+|+|+....-|||||+..++..  .|.....       +..     +... .+.-.+..+.+.+.|.|||||..|-.--
T Consensus         6 RNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGEV   85 (603)
T COG1217           6 RNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGEV   85 (603)
T ss_pred             ceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccchh
Confidence            37899999999999999988853  3322100       000     1111 1222233444789999999999999888


Q ss_pred             ccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHH
Q psy15714         89 PMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRK  168 (205)
Q Consensus        89 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (205)
                      ++.+.=.|++++++|+.+..--+.-  +.+......  +.+-|||.||+|.+..++.+-           .++...+--.
T Consensus        86 ERvl~MVDgvlLlVDA~EGpMPQTr--FVlkKAl~~--gL~PIVVvNKiDrp~Arp~~V-----------vd~vfDLf~~  150 (603)
T COG1217          86 ERVLSMVDGVLLLVDASEGPMPQTR--FVLKKALAL--GLKPIVVINKIDRPDARPDEV-----------VDEVFDLFVE  150 (603)
T ss_pred             hhhhhhcceEEEEEEcccCCCCchh--hhHHHHHHc--CCCcEEEEeCCCCCCCCHHHH-----------HHHHHHHHHH
Confidence            8899999999999999886543331  333333233  788899999999998876421           2222222222


Q ss_pred             -------cCCceEEEcccCCCC----------CHHHHHHHHHHHHHh
Q psy15714        169 -------IKAAEYLECSAKLNE----------GLDQVFIAAVRSAVK  198 (205)
Q Consensus       169 -------~~~~~~~~~Sa~~~~----------~i~~~~~~i~~~~~~  198 (205)
                             ++.+ ++..|+..|+          ++..+|+.|++.+..
T Consensus       151 L~A~deQLdFP-ivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~  196 (603)
T COG1217         151 LGATDEQLDFP-IVYASARNGTASLDPEDEADDMAPLFETILDHVPA  196 (603)
T ss_pred             hCCChhhCCCc-EEEeeccCceeccCccccccchhHHHHHHHHhCCC
Confidence                   3444 8889988764          588899998887543

>PTZ00416 elongation factor 2; Provisional

Probab=99.22  E-value=4.1e-11  Score=103.97  Aligned_cols=116  Identities=12%  Similarity=0.122  Sum_probs=77.6

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcC--CCCCCCcCcc------ccccce---------eEEEC--------CEEEEEEE
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTEN--KFPTDYVPTV------FDNYPD---------TITVD--------NKTYDVTL   75 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~--~~~~~~~~t~------~~~~~~---------~~~~~--------~~~~~~~i   75 (205)
                      .+.-+|+++|+.++|||||+++++..  ........+.      ......         .....        +....+.+
T Consensus        17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~l   96 (836)
T PTZ00416         17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINL   96 (836)
T ss_pred             cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEE
Confidence            33449999999999999999998852  2111100000      000000         11111        22567899


Q ss_pred             EEcCCCcccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccc
Q psy15714         76 WDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLR  140 (205)
Q Consensus        76 ~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  140 (205)
                      +||||+.+|.......++.+|++|+|+|+.+.-.....  ..+..+...  ++|+++++||+|+.
T Consensus        97 iDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~--~~~~~~~~~--~~p~iv~iNK~D~~  157 (836)
T PTZ00416         97 IDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTE--TVLRQALQE--RIRPVLFINKVDRA  157 (836)
T ss_pred             EcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHH--HHHHHHHHc--CCCEEEEEEChhhh
Confidence            99999998877667788999999999999886544443  333444444  78999999999987

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=99.22  E-value=4.4e-11  Score=103.93  Aligned_cols=117  Identities=14%  Similarity=0.086  Sum_probs=78.8

Q ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCC--CCCCC---------cCcc---ccccc---eeEEE--------------CC
Q psy15714         20 VHKALKVTTVGDGMVGKTCLLITHTENK--FPTDY---------VPTV---FDNYP---DTITV--------------DN   68 (205)
Q Consensus        20 ~~~~~ki~v~G~~~~GKstli~~~~~~~--~~~~~---------~~t~---~~~~~---~~~~~--------------~~   68 (205)
                      ..+--+|+|+|+.++|||||+.+++...  .....         .+..   +....   .....              .+
T Consensus        16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~   95 (843)
T PLN00116         16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDG   95 (843)
T ss_pred             ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCC
Confidence            3445689999999999999999987532  11100         0000   00000   01111              12


Q ss_pred             EEEEEEEEEcCCCcccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccc
Q psy15714         69 KTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLR  140 (205)
Q Consensus        69 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  140 (205)
                      ..+.+.++|+|||.+|-......++.+|++|+|+|+.+........ .| ..+...  ++|+++++||+|+.
T Consensus        96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~-~~-~~~~~~--~~p~i~~iNK~D~~  163 (843)
T PLN00116         96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VL-RQALGE--RIRPVLTVNKMDRC  163 (843)
T ss_pred             CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHH-HH-HHHHHC--CCCEEEEEECCccc
Confidence            3577899999999999877777889999999999998775544432 33 334344  89999999999987

>PTZ00258 GTP-binding protein; Provisional

Probab=99.22  E-value=2.1e-10  Score=90.70  Aligned_cols=86  Identities=19%  Similarity=0.161  Sum_probs=55.1

Q ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCC-CCCcCccccccceeEEECCE---------------EEEEEEEEcCCCcc
Q psy15714         20 VHKALKVTTVGDGMVGKTCLLITHTENKFP-TDYVPTVFDNYPDTITVDNK---------------TYDVTLWDTAGQED   83 (205)
Q Consensus        20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~   83 (205)
                      ....++|.++|.|++|||||++++.+.... .+++.++.......+.+.+.               ..++.+.|+||-..
T Consensus        18 ~~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~   97 (390)
T PTZ00258         18 PGNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVK   97 (390)
T ss_pred             CCCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCc
Confidence            356679999999999999999999876542 33444432222222222221               23588999999432


Q ss_pred             c----ccc---cccCcCCCcEEEEEEECC
Q psy15714         84 Y----ERL---RPMSYPNTDCFLLCFSIG  105 (205)
Q Consensus        84 ~----~~~---~~~~~~~~~~~i~v~d~~  105 (205)
                      -    ..+   .-..++.+|++++|+|..
T Consensus        98 ga~~g~gLg~~fL~~Ir~aD~il~VVd~f  126 (390)
T PTZ00258         98 GASEGEGLGNAFLSHIRAVDGIYHVVRAF  126 (390)
T ss_pred             CCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence            1    111   112467899999999973

>KOG0082|consensus

Probab=99.21  E-value=4.3e-10  Score=87.05  Aligned_cols=133  Identities=15%  Similarity=0.186  Sum_probs=85.1

Q ss_pred             EEEEEEEEcCCCcccccccccCcCCCcEEEEEEECCCcch-------HHHHHHHHHHHHhhhC-----CCCCEEEEeeCc
Q psy15714         70 TYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSS-------YENILSKWYPELKHHC-----PKVPIILVGTKA  137 (205)
Q Consensus        70 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s-------~~~~~~~~~~~~~~~~-----~~~p~ivv~nK~  137 (205)
                      ...+.++|.|||..-+..|.+.+.++++++||.++++...       ...+. +-+..+...+     .+.++++++||.
T Consensus       194 ~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~-eS~~LF~sI~n~~~F~~tsiiLFLNK~  272 (354)
T KOG0082|consen  194 GLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMH-ESLKLFESICNNKWFANTSIILFLNKK  272 (354)
T ss_pred             CCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHH-HHHHHHHHHhcCcccccCcEEEEeecH
Confidence            3668899999999999999999999999999999885321       11222 2233333222     689999999999


Q ss_pred             ccccCchhhh--hhhhhcccc-ccHHHHHH--------HHHHc-CCceEEEcccCCCCCHHHHHHHHHHHHHhhcccC
Q psy15714        138 DLRSENKTID--KKKAAEVDL-VSTSQGKK--------MRRKI-KAAEYLECSAKLNEGLDQVFIAAVRSAVKKQDKS  203 (205)
Q Consensus       138 Dl~~~~~~~~--~~~~~~~~~-~~~~~~~~--------~~~~~-~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~~~  203 (205)
                      ||....-...  ..-+++... -+.+++..        +.+.. .-..+..+.|.+-.+|+.+|..+...++...-+.
T Consensus       273 DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~~nlk~  350 (354)
T KOG0082|consen  273 DLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQNNLKD  350 (354)
T ss_pred             HHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHHHHHHH
Confidence            9864322110  000111111 22333322        22222 1222566799999999999999999998876554

>KOG1143|consensus

Probab=99.20  E-value=2.1e-10  Score=88.30  Aligned_cols=170  Identities=16%  Similarity=0.183  Sum_probs=108.6

Q ss_pred             cccccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCC------------------cCcc-----cccc-ceeEEEC----
Q psy15714         16 KSKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDY------------------VPTV-----FDNY-PDTITVD----   67 (205)
Q Consensus        16 ~~~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~------------------~~t~-----~~~~-~~~~~~~----   67 (205)
                      +.....-++|++|+|...+|||||+..+.++......                  .+.+     +.+- .+.+.+.    
T Consensus       160 Pd~QqfievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~t  239 (591)
T KOG1143|consen  160 PDSQQFIEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMT  239 (591)
T ss_pred             CCcccceEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhccc
Confidence            4556678899999999999999999888876553211                  0000     0000 1111111    


Q ss_pred             ------CEEEEEEEEEcCCCcccccccccCcCC--CcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCccc
Q psy15714         68 ------NKTYDVTLWDTAGQEDYERLRPMSYPN--TDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADL  139 (205)
Q Consensus        68 ------~~~~~~~i~D~~g~~~~~~~~~~~~~~--~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl  139 (205)
                            ....-++++|++|+.+|.....+.+..  .+...+|++++....+..-  +.+..+...  ++|+.|+.+|+|+
T Consensus       240 aEEi~e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTr--EHLgl~~AL--~iPfFvlvtK~Dl  315 (591)
T KOG1143|consen  240 AEEIVEKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTR--EHLGLIAAL--NIPFFVLVTKMDL  315 (591)
T ss_pred             HHHHHhhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccH--HHHHHHHHh--CCCeEEEEEeecc
Confidence                  123458899999999998776555444  6778888888766554442  566777766  9999999999999


Q ss_pred             ccCchhhh-------hhhhhccc-----cccHHHHHHHHHHc---CCceEEEcccCCCCCHHHHH
Q psy15714        140 RSENKTID-------KKKAAEVD-----LVSTSQGKKMRRKI---KAAEYLECSAKLNEGLDQVF  189 (205)
Q Consensus       140 ~~~~~~~~-------~~~~~~~~-----~~~~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~~~  189 (205)
                      .+..-...       .....+..     .-+..++...+.+.   ++.|++.+|..+|+|++-+.
T Consensus       316 ~~~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~  380 (591)
T KOG1143|consen  316 VDRQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLR  380 (591)
T ss_pred             ccchhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHH
Confidence            87733222       11111111     12344444444443   56779999999999987543

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=99.15  E-value=1.5e-10  Score=82.12  Aligned_cols=63  Identities=21%  Similarity=0.230  Sum_probs=44.7

Q ss_pred             EEEEEEcCCCcc----cccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCc
Q psy15714         72 DVTLWDTAGQED----YERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKA  137 (205)
Q Consensus        72 ~~~i~D~~g~~~----~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~  137 (205)
                      .+.|+|+||-..    .......+++.+|++++|.+++...+-.+.. +|.......  ...+++|.||.
T Consensus       102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~-~l~~~~~~~--~~~~i~V~nk~  168 (168)
T PF00350_consen  102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDME-FLKQMLDPD--KSRTIFVLNKA  168 (168)
T ss_dssp             SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHH-HHHHHHTTT--CSSEEEEEE-G
T ss_pred             ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHH-HHHHHhcCC--CCeEEEEEcCC
Confidence            378999999633    2344566789999999999998866555543 666666655  44599999984

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>KOG1487|consensus

Probab=99.14  E-value=3.7e-10  Score=82.95  Aligned_cols=154  Identities=18%  Similarity=0.125  Sum_probs=100.5

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCC-CCCcCccccccceeEEECCEEEEEEEEEcCCCccc------cc-ccccCc
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTENKFP-TDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY------ER-LRPMSY   92 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~------~~-~~~~~~   92 (205)
                      ....|+-++|.|.+||||++..+.+.... ..+..|+-....-.+.+.+  .++++.|+||-.+-      +. ......
T Consensus        57 tg~a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~g--aKiqlldlpgiiegakdgkgrg~qviava  134 (358)
T KOG1487|consen   57 TGDARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKG--AKIQLLDLPGIIEGAKDGKGRGKQVIAVA  134 (358)
T ss_pred             ecceeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccc--cceeeecCcchhcccccCCCCccEEEEEe
Confidence            34458999999999999999888775432 3445555555555555666  56888899994321      11 122457


Q ss_pred             CCCcEEEEEEECCCcchHHHHHH---------------------------------------------------------
Q psy15714         93 PNTDCFLLCFSIGSTSSYENILS---------------------------------------------------------  115 (205)
Q Consensus        93 ~~~~~~i~v~d~~~~~s~~~~~~---------------------------------------------------------  115 (205)
                      +.|+.+++|.|+..+-+...+.+                                                         
T Consensus       135 rtcnli~~vld~~kp~~hk~~ie~eleg~girlnk~pp~i~~kkKdkgGInlt~~~LdlD~~rsil~eyR~hsAdi~Lr~  214 (358)
T KOG1487|consen  135 RTCNLIFIVLDVLKPLSHKKIIEKELEGFGIRLNKQPPNIGTKKKDKGGINLTGTHLDLDLQRSILSEYRIHSADIALRF  214 (358)
T ss_pred             ecccEEEEEeeccCcccHHHHHHHhhhcceeeccCCCCCccccccccCceeeecchhhHHHHHHHHHHhhhcchheeeec
Confidence            88999999999887655555443                                                         


Q ss_pred             -----HHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCCCCCHHHHHH
Q psy15714        116 -----KWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFI  190 (205)
Q Consensus       116 -----~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  190 (205)
                           .+++.++...-.+|.+.++||+|-.+                 .++   +--.+.+.+.+.+||..++|++++++
T Consensus       215 DaT~DdLIdvVegnr~yVp~iyvLNkIdsIS-----------------iEE---Ldii~~iphavpISA~~~wn~d~lL~  274 (358)
T KOG1487|consen  215 DATADDLIDVVEGNRIYVPCIYVLNKIDSIS-----------------IEE---LDIIYTIPHAVPISAHTGWNFDKLLE  274 (358)
T ss_pred             CcchhhhhhhhccCceeeeeeeeecccceee-----------------eec---cceeeeccceeecccccccchHHHHH
Confidence                 12222222212467788888888433                 222   11223455689999999999999999


Q ss_pred             HHHHHH
Q psy15714        191 AAVRSA  196 (205)
Q Consensus       191 ~i~~~~  196 (205)
                      .+...+
T Consensus       275 ~mweyL  280 (358)
T KOG1487|consen  275 KMWEYL  280 (358)
T ss_pred             HHhhcc
Confidence            887654

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=99.12  E-value=2.4e-09  Score=83.95  Aligned_cols=82  Identities=21%  Similarity=0.171  Sum_probs=53.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCC-CCCcCccccccceeEEECCE---------------EEEEEEEEcCCCccc---
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTENKFP-TDYVPTVFDNYPDTITVDNK---------------TYDVTLWDTAGQEDY---   84 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~---   84 (205)
                      ++|.++|.|++|||||++++++.... .+++.++.....-.+.+.+.               ..++.+.|+||-..-   
T Consensus         3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~   82 (364)
T PRK09601          3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK   82 (364)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence            78999999999999999999987642 33444442222222222221               135889999994321   


Q ss_pred             -ccc---cccCcCCCcEEEEEEECC
Q psy15714         85 -ERL---RPMSYPNTDCFLLCFSIG  105 (205)
Q Consensus        85 -~~~---~~~~~~~~~~~i~v~d~~  105 (205)
                       +.+   .-..++.+|++++|+|+.
T Consensus        83 g~glg~~fL~~i~~aD~li~VVd~f  107 (364)
T PRK09601         83 GEGLGNQFLANIREVDAIVHVVRCF  107 (364)
T ss_pred             HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence             111   122467899999999974

>TIGR00750 lao LAO/AO transport system ATPase

Probab=99.11  E-value=1.5e-09  Score=83.97  Aligned_cols=111  Identities=21%  Similarity=0.180  Sum_probs=63.8

Q ss_pred             EEEEEEEEcCCCcccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhh
Q psy15714         70 TYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKK  149 (205)
Q Consensus        70 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~  149 (205)
                      .+.+.|.|++|.....   ...+..+|.++++-+...   -+++. .....+    .++|.++|+||+|+..........
T Consensus       126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~---~~el~-~~~~~l----~~~~~ivv~NK~Dl~~~~~~~~~~  194 (300)
T TIGR00750       126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIPGT---GDDLQ-GIKAGL----MEIADIYVVNKADGEGATNVTIAR  194 (300)
T ss_pred             CCCEEEEeCCCCchhh---hHHHHhhceEEEEecCCc---cHHHH-HHHHHH----hhhccEEEEEcccccchhHHHHHH
Confidence            4678899999854222   124667788888754433   33332 111212    267889999999987543110000


Q ss_pred             hhhccccccHHHHHHHHHH-cCC-ceEEEcccCCCCCHHHHHHHHHHHHH
Q psy15714        150 KAAEVDLVSTSQGKKMRRK-IKA-AEYLECSAKLNEGLDQVFIAAVRSAV  197 (205)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~Sa~~~~~i~~~~~~i~~~~~  197 (205)
                      ...      ......+... .+. .+++.+||+++.|++++++++.+...
T Consensus       195 ~~~------~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~  238 (300)
T TIGR00750       195 LML------ALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT  238 (300)
T ss_pred             HHH------HHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence            000      0000111111 111 24899999999999999999988643

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.10  E-value=4.9e-10  Score=84.71  Aligned_cols=168  Identities=18%  Similarity=0.137  Sum_probs=105.5

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCC---CC----------CCcCcc----c-----cccce--eEEEC----CEEEE
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTENKF---PT----------DYVPTV----F-----DNYPD--TITVD----NKTYD   72 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~~~---~~----------~~~~t~----~-----~~~~~--~~~~~----~~~~~   72 (205)
                      ...++|..+|...-|||||.+++.+-..   ++          .|..+.    .     ..+..  .....    .-.-.
T Consensus         8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~   87 (415)
T COG5257           8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR   87 (415)
T ss_pred             CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence            5679999999999999999999886311   11          000000    0     01100  01111    12345


Q ss_pred             EEEEEcCCCcccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhh
Q psy15714         73 VTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAA  152 (205)
Q Consensus        73 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~  152 (205)
                      +.+.|.|||+-.-...-.-..-.|++++|+.++.+.---.-. +.+..+.-. .-..++++-||+|+.+....       
T Consensus        88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~-EHl~AleIi-gik~iiIvQNKIDlV~~E~A-------  158 (415)
T COG5257          88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTR-EHLMALEII-GIKNIIIVQNKIDLVSRERA-------  158 (415)
T ss_pred             EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchH-HHHHHHhhh-ccceEEEEecccceecHHHH-------
Confidence            778899999876555444556689999999988653111111 222222222 24568999999999876432       


Q ss_pred             ccccccHHHHHHHHHHc--CCceEEEcccCCCCCHHHHHHHHHHHHHhhc
Q psy15714        153 EVDLVSTSQGKKMRRKI--KAAEYLECSAKLNEGLDQVFIAAVRSAVKKQ  200 (205)
Q Consensus       153 ~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~  200 (205)
                         .-..++.++|.+.-  ...|++.+||..+.||+-+++.|...+....
T Consensus       159 ---lE~y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~  205 (415)
T COG5257         159 ---LENYEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPE  205 (415)
T ss_pred             ---HHHHHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCCc
Confidence               22445566665554  2345999999999999999999988875543

>cd01855 YqeH YqeH

Probab=99.07  E-value=8e-10  Score=79.99  Aligned_cols=95  Identities=21%  Similarity=0.201  Sum_probs=65.3

Q ss_pred             cccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHH
Q psy15714         84 YERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGK  163 (205)
Q Consensus        84 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  163 (205)
                      ++.++..+++.+|++++|+|+.+...      .|...+.....+.|+++|+||+|+....             ...+...
T Consensus        24 ~~~~l~~~~~~ad~il~VvD~~~~~~------~~~~~l~~~~~~~~~ilV~NK~Dl~~~~-------------~~~~~~~   84 (190)
T cd01855          24 ILNLLSSISPKKALVVHVVDIFDFPG------SLIPRLRLFGGNNPVILVGNKIDLLPKD-------------KNLVRIK   84 (190)
T ss_pred             HHHHHHhcccCCcEEEEEEECccCCC------ccchhHHHhcCCCcEEEEEEchhcCCCC-------------CCHHHHH
Confidence            56777888999999999999987642      1222222223478999999999986532             2222222


Q ss_pred             HHH-----HHcCC--ceEEEcccCCCCCHHHHHHHHHHHHH
Q psy15714        164 KMR-----RKIKA--AEYLECSAKLNEGLDQVFIAAVRSAV  197 (205)
Q Consensus       164 ~~~-----~~~~~--~~~~~~Sa~~~~~i~~~~~~i~~~~~  197 (205)
                      .+.     +..+.  ..++.+||++++|++++++.+.+.+.
T Consensus        85 ~~~~~~~~~~~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~  125 (190)
T cd01855          85 NWLRAKAAAGLGLKPKDVILISAKKGWGVEELINAIKKLAK  125 (190)
T ss_pred             HHHHHHHHhhcCCCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence            222     22222  24899999999999999999988653

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>KOG0458|consensus

Probab=99.07  E-value=3.1e-09  Score=85.99  Aligned_cols=158  Identities=17%  Similarity=0.087  Sum_probs=98.9

Q ss_pred             ccceeeEEEEECCCCCCHHHHHHHHhcC--------------------CCC----CCCcCccccc-----c-ceeEEECC
Q psy15714         19 SVHKALKVTTVGDGMVGKTCLLITHTEN--------------------KFP----TDYVPTVFDN-----Y-PDTITVDN   68 (205)
Q Consensus        19 ~~~~~~ki~v~G~~~~GKstli~~~~~~--------------------~~~----~~~~~t~~~~-----~-~~~~~~~~   68 (205)
                      .+...+.++|+|...+|||||..+++..                    +..    ...+.|...+     . ....++.-
T Consensus       173 ~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes  252 (603)
T KOG0458|consen  173 DPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFES  252 (603)
T ss_pred             CCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEec
Confidence            3447799999999999999999887631                    111    1111121111     1 12344556


Q ss_pred             EEEEEEEEEcCCCcccccccccCcCCCcEEEEEEECCCcchHHH------HHHHHHHHHhhhCCCCCEEEEeeCcccccC
Q psy15714         69 KTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYEN------ILSKWYPELKHHCPKVPIILVGTKADLRSE  142 (205)
Q Consensus        69 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~------~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  142 (205)
                      ....++|.|.|||..|-.........+|++|+|+|++..+ |+.      -..+....++.. .-..++|++||+|+.+=
T Consensus       253 ~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~-FE~gfd~~gQtrEha~llr~L-gi~qlivaiNKmD~V~W  330 (603)
T KOG0458|consen  253 KSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGE-FESGFDPGGQTREHALLLRSL-GISQLIVAINKMDLVSW  330 (603)
T ss_pred             CceeEEEecCCCccccchhhhccccccceEEEEEECCcch-hhhccCCCCchHHHHHHHHHc-CcceEEEEeecccccCc
Confidence            6678999999999999988888899999999999988431 211      011222223222 24567899999998753


Q ss_pred             chhhhhhhhhccccccHHHHHHHH-HHcCC----ceEEEcccCCCCCHH
Q psy15714        143 NKTIDKKKAAEVDLVSTSQGKKMR-RKIKA----AEYLECSAKLNEGLD  186 (205)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~Sa~~~~~i~  186 (205)
                      .....        +...+....+. +..+.    ..+++||+..|+|+-
T Consensus       331 sq~RF--------~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~  371 (603)
T KOG0458|consen  331 SQDRF--------EEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLI  371 (603)
T ss_pred             cHHHH--------HHHHHHHHHHHHHhcCcccCCcceEecccccCCccc
Confidence            31100        12233344444 33332    249999999999974

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=99.04  E-value=1.1e-09  Score=81.17  Aligned_cols=100  Identities=22%  Similarity=0.275  Sum_probs=60.1

Q ss_pred             EEEEEEEcCC--CcccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhh
Q psy15714         71 YDVTLWDTAG--QEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDK  148 (205)
Q Consensus        71 ~~~~i~D~~g--~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~  148 (205)
                      +.+.|.+|.|  |.+.     ....-+|.+++|..+.-...++.++.-.+.        +.=++|+||.|+.....    
T Consensus       122 ~D~IiiETVGvGQsE~-----~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimE--------iaDi~vVNKaD~~gA~~----  184 (266)
T PF03308_consen  122 FDVIIIETVGVGQSEV-----DIADMADTVVLVLVPGLGDEIQAIKAGIME--------IADIFVVNKADRPGADR----  184 (266)
T ss_dssp             -SEEEEEEESSSTHHH-----HHHTTSSEEEEEEESSTCCCCCTB-TTHHH--------H-SEEEEE--SHHHHHH----
T ss_pred             CCEEEEeCCCCCccHH-----HHHHhcCeEEEEecCCCccHHHHHhhhhhh--------hccEEEEeCCChHHHHH----
Confidence            5577777765  4432     246779999999988766665554422222        23389999999655432    


Q ss_pred             hhhhccccccHHHHHHHHHHcC------CceEEEcccCCCCCHHHHHHHHHHHH
Q psy15714        149 KKAAEVDLVSTSQGKKMRRKIK------AAEYLECSAKLNEGLDQVFIAAVRSA  196 (205)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~Sa~~~~~i~~~~~~i~~~~  196 (205)
                               ...+.+.......      .+|++.+||..+.|++++++.|.+..
T Consensus       185 ---------~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~  229 (266)
T PF03308_consen  185 ---------TVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHR  229 (266)
T ss_dssp             ---------HHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred             ---------HHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence                     1222222222111      24699999999999999999987753

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>cd01859 MJ1464 MJ1464

Probab=99.04  E-value=7.3e-10  Score=77.63  Aligned_cols=95  Identities=17%  Similarity=0.081  Sum_probs=64.0

Q ss_pred             ccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHH
Q psy15714         85 ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKK  164 (205)
Q Consensus        85 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  164 (205)
                      +.+.++.++++|++++|+|+.++......  .+...+...  +.|+++|+||+|+....            ..  +....
T Consensus         3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~~--~l~~~~~~~--~~p~iiv~NK~Dl~~~~------------~~--~~~~~   64 (156)
T cd01859           3 KRLVRRIIKESDVVLEVLDARDPELTRSR--KLERYVLEL--GKKLLIVLNKADLVPKE------------VL--EKWKS   64 (156)
T ss_pred             HHHHHHHHhhCCEEEEEeeCCCCcccCCH--HHHHHHHhC--CCcEEEEEEhHHhCCHH------------HH--HHHHH
Confidence            45566778889999999999876433221  233333333  78999999999985421            11  11112


Q ss_pred             HHHHcCCceEEEcccCCCCCHHHHHHHHHHHHHh
Q psy15714        165 MRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVK  198 (205)
Q Consensus       165 ~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  198 (205)
                      +.+..+.. ++.+||+++.|++++++.+.+.+..
T Consensus        65 ~~~~~~~~-~~~iSa~~~~gi~~L~~~l~~~~~~   97 (156)
T cd01859          65 IKESEGIP-VVYVSAKERLGTKILRRTIKELAKI   97 (156)
T ss_pred             HHHhCCCc-EEEEEccccccHHHHHHHHHHHHhh
Confidence            23333444 8999999999999999999877654

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>PRK00098 GTPase RsgA; Reviewed

Probab=99.03  E-value=1.6e-09  Score=83.63  Aligned_cols=87  Identities=24%  Similarity=0.219  Sum_probs=65.4

Q ss_pred             CcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcC
Q psy15714         91 SYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIK  170 (205)
Q Consensus        91 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (205)
                      .+.++|.+++|+|+.++.........|+..+...  ++|+++|+||+|+....            . ..++.....+..+
T Consensus        77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~~--~ip~iIVlNK~DL~~~~------------~-~~~~~~~~~~~~g  141 (298)
T PRK00098         77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEAN--GIKPIIVLNKIDLLDDL------------E-EARELLALYRAIG  141 (298)
T ss_pred             eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHHC--CCCEEEEEEhHHcCCCH------------H-HHHHHHHHHHHCC
Confidence            4689999999999988876666655787776654  89999999999996321            1 1222333445556


Q ss_pred             CceEEEcccCCCCCHHHHHHHHH
Q psy15714        171 AAEYLECSAKLNEGLDQVFIAAV  193 (205)
Q Consensus       171 ~~~~~~~Sa~~~~~i~~~~~~i~  193 (205)
                      .. ++++||++++|++++++.+.
T Consensus       142 ~~-v~~vSA~~g~gi~~L~~~l~  163 (298)
T PRK00098        142 YD-VLELSAKEGEGLDELKPLLA  163 (298)
T ss_pred             Ce-EEEEeCCCCccHHHHHhhcc
Confidence            54 99999999999999998764

>smart00053 DYNc Dynamin, GTPase

Probab=99.03  E-value=2.4e-09  Score=79.67  Aligned_cols=70  Identities=21%  Similarity=0.140  Sum_probs=45.3

Q ss_pred             EEEEEEEcCCCcc-------------cccccccCcC-CCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeC
Q psy15714         71 YDVTLWDTAGQED-------------YERLRPMSYP-NTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTK  136 (205)
Q Consensus        71 ~~~~i~D~~g~~~-------------~~~~~~~~~~-~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK  136 (205)
                      ..+.+.|+||-..             .+.+...+++ ..+++++|.|+...-.-.+.. .+...+...  +.|+++|+||
T Consensus       125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l-~ia~~ld~~--~~rti~ViTK  201 (240)
T smart00053      125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDAL-KLAKEVDPQ--GERTIGVITK  201 (240)
T ss_pred             CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHH-HHHHHHHHc--CCcEEEEEEC
Confidence            5688999999642             1122344566 456999999986543322322 344444444  8999999999


Q ss_pred             cccccCc
Q psy15714        137 ADLRSEN  143 (205)
Q Consensus       137 ~Dl~~~~  143 (205)
                      .|.....
T Consensus       202 ~D~~~~~  208 (240)
T smart00053      202 LDLMDEG  208 (240)
T ss_pred             CCCCCcc
Confidence            9987643

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=99.02  E-value=4.7e-09  Score=78.94  Aligned_cols=108  Identities=22%  Similarity=0.231  Sum_probs=66.0

Q ss_pred             EEEEEEEEcCCCcccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhh
Q psy15714         70 TYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKK  149 (205)
Q Consensus        70 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~  149 (205)
                      .+.+.|.+|.|--..+.   ...+-+|.+++|.-..-....+.++.-.+.        +-=++|+||.|.......... 
T Consensus       143 G~DvIIVETVGvGQsev---~I~~~aDt~~~v~~pg~GD~~Q~iK~GimE--------iaDi~vINKaD~~~A~~a~r~-  210 (323)
T COG1703         143 GYDVIIVETVGVGQSEV---DIANMADTFLVVMIPGAGDDLQGIKAGIME--------IADIIVINKADRKGAEKAARE-  210 (323)
T ss_pred             CCCEEEEEecCCCcchh---HHhhhcceEEEEecCCCCcHHHHHHhhhhh--------hhheeeEeccChhhHHHHHHH-
Confidence            35677888876433332   356778999998877766666666532222        223899999996544221110 


Q ss_pred             hhhccccccHHHHHHHH----HHcC-CceEEEcccCCCCCHHHHHHHHHHHHHh
Q psy15714        150 KAAEVDLVSTSQGKKMR----RKIK-AAEYLECSAKLNEGLDQVFIAAVRSAVK  198 (205)
Q Consensus       150 ~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  198 (205)
                               ...+..+.    ...+ .++++.+||..|+|++++++.|.+....
T Consensus       211 ---------l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~  255 (323)
T COG1703         211 ---------LRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKF  255 (323)
T ss_pred             ---------HHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHH
Confidence                     00111111    1112 2448999999999999999999877544

>cd01900 YchF YchF subfamily

Probab=99.02  E-value=2.7e-09  Score=80.92  Aligned_cols=80  Identities=19%  Similarity=0.144  Sum_probs=50.8

Q ss_pred             EEEECCCCCCHHHHHHHHhcCCCC-CCCcCccccccceeEEECCE---------------EEEEEEEEcCCCccc----c
Q psy15714         26 VTTVGDGMVGKTCLLITHTENKFP-TDYVPTVFDNYPDTITVDNK---------------TYDVTLWDTAGQEDY----E   85 (205)
Q Consensus        26 i~v~G~~~~GKstli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~----~   85 (205)
                      |+++|.|++|||||++++++.... .++..++.......+.+.+.               ..++++.|+||-..-    .
T Consensus         1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~   80 (274)
T cd01900           1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE   80 (274)
T ss_pred             CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence            579999999999999999987652 33444432222222333321               235899999994321    1


Q ss_pred             cc---cccCcCCCcEEEEEEECC
Q psy15714         86 RL---RPMSYPNTDCFLLCFSIG  105 (205)
Q Consensus        86 ~~---~~~~~~~~~~~i~v~d~~  105 (205)
                      .+   .-..++.+|++++|+|+.
T Consensus        81 glg~~fL~~i~~~D~li~VV~~f  103 (274)
T cd01900          81 GLGNKFLSHIREVDAIAHVVRCF  103 (274)
T ss_pred             HHHHHHHHHHHhCCEEEEEEeCc
Confidence            11   112357899999999863

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=99.01  E-value=1e-08  Score=72.64  Aligned_cols=102  Identities=20%  Similarity=0.141  Sum_probs=60.8

Q ss_pred             EEEEEEEcCCCcccccccccCcCCCc-EEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhh
Q psy15714         71 YDVTLWDTAGQEDYERLRPMSYPNTD-CFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKK  149 (205)
Q Consensus        71 ~~~~i~D~~g~~~~~~~~~~~~~~~~-~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~  149 (205)
                      ..+.+++.+|.  .-  .+.-..-.+ .-|+|+|++..+-.-.   .-...+.    . .=++|+||.|+...-      
T Consensus        97 ~Dll~iEs~GN--L~--~~~sp~L~d~~~v~VidvteGe~~P~---K~gP~i~----~-aDllVInK~DLa~~v------  158 (202)
T COG0378          97 LDLLFIESVGN--LV--CPFSPDLGDHLRVVVIDVTEGEDIPR---KGGPGIF----K-ADLLVINKTDLAPYV------  158 (202)
T ss_pred             CCEEEEecCcc--ee--cccCcchhhceEEEEEECCCCCCCcc---cCCCcee----E-eeEEEEehHHhHHHh------
Confidence            34555566661  11  111223344 7888888876543211   1001110    1 248999999998753      


Q ss_pred             hhhccccccHHHHHHHHHH-cCCceEEEcccCCCCCHHHHHHHHHHHH
Q psy15714        150 KAAEVDLVSTSQGKKMRRK-IKAAEYLECSAKLNEGLDQVFIAAVRSA  196 (205)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~~~~~i~~~~  196 (205)
                            ..+.+.....++. .+-.+++++|+++|+|++++++|+....
T Consensus       159 ------~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~  200 (202)
T COG0378         159 ------GADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA  200 (202)
T ss_pred             ------CccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence                  3444544444444 4556699999999999999999987654

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.00  E-value=4.4e-09  Score=82.79  Aligned_cols=154  Identities=19%  Similarity=0.114  Sum_probs=101.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccc-cceeE---EECCEEEEEEEEEcCCCcccccccccCcCCCcEEEE
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDN-YPDTI---TVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLL  100 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~-~~~~~---~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~  100 (205)
                      .|...|.-.-|||||+.++.+..-..  .+..... .+..+   ..+.....+.+.|.||++++-...-..+...|.+++
T Consensus         2 ii~t~GhidHgkT~L~~altg~~~d~--l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alL   79 (447)
T COG3276           2 IIGTAGHIDHGKTTLLKALTGGVTDR--LPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALL   79 (447)
T ss_pred             eEEEeeeeeccchhhhhhhccccccc--chhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEE
Confidence            47788999999999999998765422  1111111 11111   112223478899999999987776677889999999


Q ss_pred             EEECCCcchHHHHHHHHHHHHhhhCCCCC-EEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHH--cCCceEEEc
Q psy15714        101 CFSIGSTSSYENILSKWYPELKHHCPKVP-IILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRK--IKAAEYLEC  177 (205)
Q Consensus       101 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  177 (205)
                      |+++++.-..+..  +.+..+...  +++ .++|+||+|..+...             ..+..++....  +...+++.+
T Consensus        80 vV~~deGl~~qtg--EhL~iLdll--gi~~giivltk~D~~d~~r-------------~e~~i~~Il~~l~l~~~~i~~~  142 (447)
T COG3276          80 VVAADEGLMAQTG--EHLLILDLL--GIKNGIIVLTKADRVDEAR-------------IEQKIKQILADLSLANAKIFKT  142 (447)
T ss_pred             EEeCccCcchhhH--HHHHHHHhc--CCCceEEEEeccccccHHH-------------HHHHHHHHHhhccccccccccc
Confidence            9999765443333  333444333  444 499999999876531             11112222211  344458999


Q ss_pred             ccCCCCCHHHHHHHHHHHHH
Q psy15714        178 SAKLNEGLDQVFIAAVRSAV  197 (205)
Q Consensus       178 Sa~~~~~i~~~~~~i~~~~~  197 (205)
                      |+++|.||+++.+.|.....
T Consensus       143 s~~~g~GI~~Lk~~l~~L~~  162 (447)
T COG3276         143 SAKTGRGIEELKNELIDLLE  162 (447)
T ss_pred             ccccCCCHHHHHHHHHHhhh
Confidence            99999999999999998883

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=98.99  E-value=6.6e-09  Score=80.12  Aligned_cols=123  Identities=20%  Similarity=0.242  Sum_probs=74.2

Q ss_pred             ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCC----------cCcccccc-ceeEEECCEEEEEEEEEcCCCcc----
Q psy15714         19 SVHKALKVTTVGDGMVGKTCLLITHTENKFPTDY----------VPTVFDNY-PDTITVDNKTYDVTLWDTAGQED----   83 (205)
Q Consensus        19 ~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~----------~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~----   83 (205)
                      .....+.|+++|+.|.|||||+|.+++.......          .++..... ...+.-++..+.++++||||-..    
T Consensus        19 k~Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idN   98 (373)
T COG5019          19 KKGIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDN   98 (373)
T ss_pred             hcCCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccc
Confidence            4467899999999999999999999987554331          11111111 12334468889999999999111    


Q ss_pred             --------------cc--------cccccCcCCCc--EEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCccc
Q psy15714         84 --------------YE--------RLRPMSYPNTD--CFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADL  139 (205)
Q Consensus        84 --------------~~--------~~~~~~~~~~~--~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl  139 (205)
                                    |+        ..+...+.+..  +++|.+.++. ..+..+.   +..+++....+.+|.|..|+|.
T Consensus        99 s~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptg-h~l~~~D---Ie~Mk~ls~~vNlIPVI~KaD~  174 (373)
T COG5019          99 SKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTG-HGLKPLD---IEAMKRLSKRVNLIPVIAKADT  174 (373)
T ss_pred             cccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCC-CCCCHHH---HHHHHHHhcccCeeeeeecccc
Confidence                          11        11111344444  4444444332 2333332   2334444456889999999998


Q ss_pred             ccCchh
Q psy15714        140 RSENKT  145 (205)
Q Consensus       140 ~~~~~~  145 (205)
                      .....+
T Consensus       175 lT~~El  180 (373)
T COG5019         175 LTDDEL  180 (373)
T ss_pred             CCHHHH
Confidence            766543

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=98.97  E-value=5.6e-09  Score=79.33  Aligned_cols=57  Identities=18%  Similarity=0.056  Sum_probs=39.7

Q ss_pred             CCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHH-HHcCCceEEEcccCCCCCHHHHHHHHHHH
Q psy15714        127 KVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMR-RKIKAAEYLECSAKLNEGLDQVFIAAVRS  195 (205)
Q Consensus       127 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  195 (205)
                      ..+-++|+||+|+....            ....+...... +.....+++.+||++|+|++++.+||...
T Consensus       230 ~~ADIVVLNKiDLl~~~------------~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~  287 (290)
T PRK10463        230 AAASLMLLNKVDLLPYL------------NFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ  287 (290)
T ss_pred             hcCcEEEEEhHHcCccc------------HHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence            46679999999997531            11222333333 33344559999999999999999999774

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=98.94  E-value=4.1e-09  Score=89.06  Aligned_cols=121  Identities=18%  Similarity=0.113  Sum_probs=82.4

Q ss_pred             cceeeEEEEECCCCCCHHHHHHHHhc--CCCCC---CCcCcccccc-----ce-------eEEECCE-EEEEEEEEcCCC
Q psy15714         20 VHKALKVTTVGDGMVGKTCLLITHTE--NKFPT---DYVPTVFDNY-----PD-------TITVDNK-TYDVTLWDTAGQ   81 (205)
Q Consensus        20 ~~~~~ki~v~G~~~~GKstli~~~~~--~~~~~---~~~~t~~~~~-----~~-------~~~~~~~-~~~~~i~D~~g~   81 (205)
                      ..+.-+|.++|+-++|||||..+++.  +....   ........++     ..       ..+.... .+.++++|||||
T Consensus         7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH   86 (697)
T COG0480           7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH   86 (697)
T ss_pred             cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence            44556899999999999999988763  22211   0000000000     01       1111122 478999999999


Q ss_pred             cccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCch
Q psy15714         82 EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENK  144 (205)
Q Consensus        82 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~  144 (205)
                      -+|..-..+.++-+|++|+|+|+...-..+.-. -| ....++  ++|.+++.||+|....+.
T Consensus        87 VDFt~EV~rslrvlDgavvVvdaveGV~~QTEt-v~-rqa~~~--~vp~i~fiNKmDR~~a~~  145 (697)
T COG0480          87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQTET-VW-RQADKY--GVPRILFVNKMDRLGADF  145 (697)
T ss_pred             cccHHHHHHHHHhhcceEEEEECCCCeeecHHH-HH-HHHhhc--CCCeEEEEECccccccCh
Confidence            999988888899999999999998875554432 34 444444  899999999999876543

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.94  E-value=4.3e-09  Score=83.40  Aligned_cols=96  Identities=24%  Similarity=0.312  Sum_probs=70.4

Q ss_pred             CcccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHH
Q psy15714         81 QEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTS  160 (205)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~  160 (205)
                      .+.|+.+...+.+.++++++|+|+.+...      .|...+.+...+.|+++|+||+|+...             ....+
T Consensus        50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~------s~~~~l~~~~~~~piilV~NK~DLl~k-------------~~~~~  110 (360)
T TIGR03597        50 DDDFLNLLNSLGDSNALIVYVVDIFDFEG------SLIPELKRFVGGNPVLLVGNKIDLLPK-------------SVNLS  110 (360)
T ss_pred             HHHHHHHHhhcccCCcEEEEEEECcCCCC------CccHHHHHHhCCCCEEEEEEchhhCCC-------------CCCHH
Confidence            45788888888899999999999976542      344455554457899999999999753             22223


Q ss_pred             HH----HHHHHHcCCc--eEEEcccCCCCCHHHHHHHHHHH
Q psy15714        161 QG----KKMRRKIKAA--EYLECSAKLNEGLDQVFIAAVRS  195 (205)
Q Consensus       161 ~~----~~~~~~~~~~--~~~~~Sa~~~~~i~~~~~~i~~~  195 (205)
                      +.    +++++..+..  .++.+||++++|++++|+.+.+.
T Consensus       111 ~~~~~l~~~~k~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~  151 (360)
T TIGR03597       111 KIKEWMKKRAKELGLKPVDIILVSAKKGNGIDELLDKIKKA  151 (360)
T ss_pred             HHHHHHHHHHHHcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence            33    3345566653  48999999999999999998654

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=98.94  E-value=9.5e-09  Score=80.80  Aligned_cols=120  Identities=15%  Similarity=0.145  Sum_probs=81.9

Q ss_pred             eeeEEEEECCCCCCHHHHHHHHh--cCCCCC--------CCcCc----------ccccc-ceeEEECCEEEEEEEEEcCC
Q psy15714         22 KALKVTTVGDGMVGKTCLLITHT--ENKFPT--------DYVPT----------VFDNY-PDTITVDNKTYDVTLWDTAG   80 (205)
Q Consensus        22 ~~~ki~v~G~~~~GKstli~~~~--~~~~~~--------~~~~t----------~~~~~-~~~~~~~~~~~~~~i~D~~g   80 (205)
                      +.-..+|+-.|.+|||||-.+++  ++.+..        ....+          .+..+ +....++...+.+.|.||||
T Consensus        11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPG   90 (528)
T COG4108          11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPG   90 (528)
T ss_pred             hhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCC
Confidence            33467999999999999997765  221110        00000          02222 22334455557789999999


Q ss_pred             CcccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchh
Q psy15714         81 QEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKT  145 (205)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~  145 (205)
                      |+.|..-.=+.+..+|.+|.|+|+...-.-+.+  .+....+..  ++|++-++||.|.....+.
T Consensus        91 HeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~--KLfeVcrlR--~iPI~TFiNKlDR~~rdP~  151 (528)
T COG4108          91 HEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTL--KLFEVCRLR--DIPIFTFINKLDREGRDPL  151 (528)
T ss_pred             ccccchhHHHHHHhhheeeEEEecccCccHHHH--HHHHHHhhc--CCceEEEeeccccccCChH
Confidence            999876544568899999999999876555554  566666655  9999999999998776543

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.93  E-value=6e-09  Score=80.11  Aligned_cols=88  Identities=19%  Similarity=0.151  Sum_probs=65.9

Q ss_pred             ccCcCCCcEEEEEEECCCcc-hHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHH
Q psy15714         89 PMSYPNTDCFLLCFSIGSTS-SYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRR  167 (205)
Q Consensus        89 ~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (205)
                      ...+.++|.+++|+|+.++. ++..+. .|+..+...  ++|+++|+||+||....            .  ......+..
T Consensus        73 ~~i~anvD~vllV~d~~~p~~s~~~ld-r~L~~~~~~--~ip~iIVlNK~DL~~~~------------~--~~~~~~~~~  135 (287)
T cd01854          73 QVIAANVDQLVIVVSLNEPFFNPRLLD-RYLVAAEAA--GIEPVIVLTKADLLDDE------------E--EELELVEAL  135 (287)
T ss_pred             eeEEEeCCEEEEEEEcCCCCCCHHHHH-HHHHHHHHc--CCCEEEEEEHHHCCChH------------H--HHHHHHHHH
Confidence            34588999999999999887 777765 687777655  89999999999996531            1  111222334


Q ss_pred             HcCCceEEEcccCCCCCHHHHHHHHHH
Q psy15714        168 KIKAAEYLECSAKLNEGLDQVFIAAVR  194 (205)
Q Consensus       168 ~~~~~~~~~~Sa~~~~~i~~~~~~i~~  194 (205)
                      ..+.. ++.+||+++.|+++++..+..
T Consensus       136 ~~g~~-v~~vSA~~g~gi~~L~~~L~~  161 (287)
T cd01854         136 ALGYP-VLAVSAKTGEGLDELREYLKG  161 (287)
T ss_pred             hCCCe-EEEEECCCCccHHHHHhhhcc
Confidence            45554 899999999999999987753

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>KOG1547|consensus

Probab=98.93  E-value=8.7e-09  Score=75.05  Aligned_cols=119  Identities=20%  Similarity=0.204  Sum_probs=72.1

Q ss_pred             ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCC---------CcCcccccc-ceeEEECCEEEEEEEEEcCCC-------
Q psy15714         19 SVHKALKVTTVGDGMVGKTCLLITHTENKFPTD---------YVPTVFDNY-PDTITVDNKTYDVTLWDTAGQ-------   81 (205)
Q Consensus        19 ~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~---------~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~-------   81 (205)
                      ...-+++|+|+|.+|.|||||++.++.......         +..|++... ...+.-++...+++++||||-       
T Consensus        42 k~GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~  121 (336)
T KOG1547|consen   42 KTGFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINND  121 (336)
T ss_pred             hccCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCcc
Confidence            345689999999999999999999887654331         111211111 234445788899999999991       


Q ss_pred             -------------------cccccccccCcCCCcEEEEEEECC-CcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccc
Q psy15714         82 -------------------EDYERLRPMSYPNTDCFLLCFSIG-STSSYENILSKWYPELKHHCPKVPIILVGTKADLR  140 (205)
Q Consensus        82 -------------------~~~~~~~~~~~~~~~~~i~v~d~~-~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  140 (205)
                                         ++....+..++++..+..++|-+. ...++..+.-+++..+.+   -+.++-|.-|+|-.
T Consensus       122 ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~---vvNvvPVIakaDtl  197 (336)
T KOG1547|consen  122 NCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTE---VVNVVPVIAKADTL  197 (336)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhh---hheeeeeEeecccc
Confidence                               111222445666666655555432 223444433244444443   46678888899954

>KOG0468|consensus

Probab=98.93  E-value=4.5e-09  Score=86.33  Aligned_cols=117  Identities=22%  Similarity=0.268  Sum_probs=83.9

Q ss_pred             ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcc---------ccccceeEE------------ECCEEEEEEEEE
Q psy15714         19 SVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV---------FDNYPDTIT------------VDNKTYDVTLWD   77 (205)
Q Consensus        19 ~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~---------~~~~~~~~~------------~~~~~~~~~i~D   77 (205)
                      .+....++.++|+-..|||+|+..+.....++....+.         .......+.            ..++.+-+++.|
T Consensus       124 ~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilD  203 (971)
T KOG0468|consen  124 NPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILD  203 (971)
T ss_pred             CcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeec
Confidence            44567789999999999999998888765543322211         111111111            246778899999


Q ss_pred             cCCCcccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccc
Q psy15714         78 TAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLR  140 (205)
Q Consensus        78 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~  140 (205)
                      +|||-+|-.-....++.+|++++|+|+.+.-++..-  .+   +++.. ++.|+++|+||.|..
T Consensus       204 TPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntE--r~---ikhaiq~~~~i~vviNKiDRL  262 (971)
T KOG0468|consen  204 TPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTE--RI---IKHAIQNRLPIVVVINKVDRL  262 (971)
T ss_pred             CCCcccchHHHHHHhhhcceEEEEEEcccCceeeHH--HH---HHHHHhccCcEEEEEehhHHH
Confidence            999999988877889999999999999887665542  22   22322 489999999999963

>PRK12289 GTPase RsgA; Reviewed

Probab=98.91  E-value=9.2e-09  Score=80.84  Aligned_cols=90  Identities=20%  Similarity=0.176  Sum_probs=64.1

Q ss_pred             ccccCcCCCcEEEEEEECCCcc-hHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHH
Q psy15714         87 LRPMSYPNTDCFLLCFSIGSTS-SYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKM  165 (205)
Q Consensus        87 ~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (205)
                      +.+..+.++|.+++|+|+.++. ....+. .|+..+..  .++|+++|+||+||....            ..  +.....
T Consensus        82 L~R~~~aNvD~vLlV~d~~~p~~~~~~Ld-R~L~~a~~--~~ip~ILVlNK~DLv~~~------------~~--~~~~~~  144 (352)
T PRK12289         82 LDRPPVANADQILLVFALAEPPLDPWQLS-RFLVKAES--TGLEIVLCLNKADLVSPT------------EQ--QQWQDR  144 (352)
T ss_pred             eechhhhcCCEEEEEEECCCCCCCHHHHH-HHHHHHHH--CCCCEEEEEEchhcCChH------------HH--HHHHHH
Confidence            3445688999999999998775 333333 66665544  489999999999986432            11  112222


Q ss_pred             HHHcCCceEEEcccCCCCCHHHHHHHHHH
Q psy15714        166 RRKIKAAEYLECSAKLNEGLDQVFIAAVR  194 (205)
Q Consensus       166 ~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~  194 (205)
                      ...++.. ++.+||.++.|++++++.+..
T Consensus       145 ~~~~g~~-v~~iSA~tg~GI~eL~~~L~~  172 (352)
T PRK12289        145 LQQWGYQ-PLFISVETGIGLEALLEQLRN  172 (352)
T ss_pred             HHhcCCe-EEEEEcCCCCCHHHHhhhhcc
Confidence            3456665 899999999999999988764

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=98.91  E-value=8.9e-09  Score=85.44  Aligned_cols=118  Identities=13%  Similarity=0.051  Sum_probs=72.1

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCC--cCccccccceeEEECCEEEEEEEEEcCCCcccc-------cc---c
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDY--VPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYE-------RL---R   88 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~~---~   88 (205)
                      ...++|+++|.+|+||||++|.+++.......  .+.+..........++  ..+.++||||-....       ..   .
T Consensus       116 dfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeILk~I  193 (763)
T TIGR00993       116 DFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKILSSV  193 (763)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECC--ceEEEEECCCCCccccchHHHHHHHHHH
Confidence            45689999999999999999999987532211  1111111112223455  568999999965421       11   1


Q ss_pred             ccCc--CCCcEEEEEEECCCcchH-HHHHHHHHHHHhhhC-C--CCCEEEEeeCcccccC
Q psy15714         89 PMSY--PNTDCFLLCFSIGSTSSY-ENILSKWYPELKHHC-P--KVPIILVGTKADLRSE  142 (205)
Q Consensus        89 ~~~~--~~~~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~-~--~~p~ivv~nK~Dl~~~  142 (205)
                      ..++  ...|++++|..++..... ++.  .++..+...+ .  -..+|||.|+.|...+
T Consensus       194 k~~Lsk~gpDVVLlV~RLd~~~~D~eD~--~aLr~Iq~lFG~~Iwk~tIVVFThgD~lpp  251 (763)
T TIGR00993       194 KKFIKKNPPDIVLYVDRLDMQTRDSNDL--PLLRTITDVLGPSIWFNAIVTLTHAASAPP  251 (763)
T ss_pred             HHHHhcCCCCEEEEEEeCCCccccHHHH--HHHHHHHHHhCHHhHcCEEEEEeCCccCCC
Confidence            1122  257999999887644332 222  4555555444 1  3568999999998754

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=98.90  E-value=2.8e-08  Score=77.14  Aligned_cols=83  Identities=22%  Similarity=0.199  Sum_probs=54.4

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCC-CCCcCccccccceeEEE------------C----CEEEEEEEEEcCCC----
Q psy15714         23 ALKVTTVGDGMVGKTCLLITHTENKFP-TDYVPTVFDNYPDTITV------------D----NKTYDVTLWDTAGQ----   81 (205)
Q Consensus        23 ~~ki~v~G~~~~GKstli~~~~~~~~~-~~~~~t~~~~~~~~~~~------------~----~~~~~~~i~D~~g~----   81 (205)
                      .+++.++|.|++|||||+++++..... .+|+.++.+.-.-.+.+            .    -....+.+.|++|-    
T Consensus         2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA   81 (372)
T COG0012           2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA   81 (372)
T ss_pred             CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence            478999999999999999999987643 45555542221111111            1    13467889999983    


Q ss_pred             ccccccccc---CcCCCcEEEEEEECC
Q psy15714         82 EDYERLRPM---SYPNTDCFLLCFSIG  105 (205)
Q Consensus        82 ~~~~~~~~~---~~~~~~~~i~v~d~~  105 (205)
                      .+-+.+-..   -++.+|+++-|+++.
T Consensus        82 s~GeGLGNkFL~~IRevdaI~hVVr~f  108 (372)
T COG0012          82 SKGEGLGNKFLDNIREVDAIIHVVRCF  108 (372)
T ss_pred             ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence            223333222   367899999999866

>KOG0463|consensus

Probab=98.89  E-value=4.5e-09  Score=81.26  Aligned_cols=169  Identities=17%  Similarity=0.191  Sum_probs=98.2

Q ss_pred             cccccceeeEEEEECCCCCCHHHHHHHHhcCCCCC------------------CCcCccccccc-----eeEE-------
Q psy15714         16 KSKSVHKALKVTTVGDGMVGKTCLLITHTENKFPT------------------DYVPTVFDNYP-----DTIT-------   65 (205)
Q Consensus        16 ~~~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~------------------~~~~t~~~~~~-----~~~~-------   65 (205)
                      .....-.+.|++|+|+..+|||||+..+..+....                  ...++.+.+..     -.+.       
T Consensus       126 ~~~~DF~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg  205 (641)
T KOG0463|consen  126 PTEKDFIEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHG  205 (641)
T ss_pred             CCCccceeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCC
Confidence            34456688999999999999999997666544322                  22222222110     0000       


Q ss_pred             --------ECCEEEEEEEEEcCCCcccccccccCc--CCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEee
Q psy15714         66 --------VDNKTYDVTLWDTAGQEDYERLRPMSY--PNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGT  135 (205)
Q Consensus        66 --------~~~~~~~~~i~D~~g~~~~~~~~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~n  135 (205)
                              ..+...-++++|++|+++|-.....-.  +-.|...+++-++-.  +.....+.+......  ++|+.+|.+
T Consensus       206 ~~LdWvkIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaG--IiGmTKEHLgLALaL--~VPVfvVVT  281 (641)
T KOG0463|consen  206 HNLDWVKICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAG--IIGMTKEHLGLALAL--HVPVFVVVT  281 (641)
T ss_pred             CcccceeeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEeccccc--ceeccHHhhhhhhhh--cCcEEEEEE
Confidence                    012234578899999999977644333  336777777755432  223333444444444  899999999


Q ss_pred             CcccccCchhhhhh-------hhhccccc-----cHHH----HHHHHHHcCCceEEEcccCCCCCHHHHH
Q psy15714        136 KADLRSENKTIDKK-------KAAEVDLV-----STSQ----GKKMRRKIKAAEYLECSAKLNEGLDQVF  189 (205)
Q Consensus       136 K~Dl~~~~~~~~~~-------~~~~~~~~-----~~~~----~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  189 (205)
                      |+|....+...+..       +..+.+.+     +.++    +-++..+ ..+|+|.+|..+|+|++-+.
T Consensus       282 KIDMCPANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Se-r~CPIFQvSNVtG~NL~LLk  350 (641)
T KOG0463|consen  282 KIDMCPANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSE-RVCPIFQVSNVTGTNLPLLK  350 (641)
T ss_pred             eeccCcHHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccc-cccceEEeccccCCChHHHH
Confidence            99998776543322       11112221     1111    2223222 33459999999999986543

>KOG2655|consensus

Probab=98.87  E-value=6.9e-08  Score=75.03  Aligned_cols=125  Identities=21%  Similarity=0.231  Sum_probs=75.5

Q ss_pred             cccccceeeEEEEECCCCCCHHHHHHHHhcCCCCCC---------CcCcccccc-ceeEEECCEEEEEEEEEcCCCc---
Q psy15714         16 KSKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTD---------YVPTVFDNY-PDTITVDNKTYDVTLWDTAGQE---   82 (205)
Q Consensus        16 ~~~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~---------~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~---   82 (205)
                      .+......+.++++|+.|.|||||+|.|+...+..+         ...+..... ...+.-+|..+.+++.||||-.   
T Consensus        14 ~~~KkG~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~v   93 (366)
T KOG2655|consen   14 KSVKKGFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAV   93 (366)
T ss_pred             HHHhcCCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccc
Confidence            334455679999999999999999999887755432         111111111 2234446888999999999911   


Q ss_pred             ---------------ccc-------cccccCcCC--CcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcc
Q psy15714         83 ---------------DYE-------RLRPMSYPN--TDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKAD  138 (205)
Q Consensus        83 ---------------~~~-------~~~~~~~~~--~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D  138 (205)
                                     .|+       .+.+..+..  .++++|.+..+.. .+..+.   +..+++.+..+.+|-|.-|+|
T Consensus        94 dns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh-gL~p~D---i~~Mk~l~~~vNiIPVI~KaD  169 (366)
T KOG2655|consen   94 DNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH-GLKPLD---IEFMKKLSKKVNLIPVIAKAD  169 (366)
T ss_pred             cccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC-CCcHhh---HHHHHHHhccccccceeeccc
Confidence                           111       112234454  4455555544322 233332   233445556789999999999


Q ss_pred             cccCch
Q psy15714        139 LRSENK  144 (205)
Q Consensus       139 l~~~~~  144 (205)
                      ......
T Consensus       170 ~lT~~E  175 (366)
T KOG2655|consen  170 TLTKDE  175 (366)
T ss_pred             cCCHHH
Confidence            876654

>PRK12288 GTPase RsgA; Reviewed

Probab=98.84  E-value=2.7e-08  Score=78.23  Aligned_cols=88  Identities=18%  Similarity=0.177  Sum_probs=64.6

Q ss_pred             cCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCC
Q psy15714         92 YPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKA  171 (205)
Q Consensus        92 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (205)
                      ..++|.+++|++++...++..+. .|+......  ++|.++|+||+|+......           ...++........+.
T Consensus       118 aANvD~vlIV~s~~p~~s~~~Ld-r~L~~a~~~--~i~~VIVlNK~DL~~~~~~-----------~~~~~~~~~y~~~g~  183 (347)
T PRK12288        118 AANIDQIVIVSAVLPELSLNIID-RYLVACETL--GIEPLIVLNKIDLLDDEGR-----------AFVNEQLDIYRNIGY  183 (347)
T ss_pred             EEEccEEEEEEeCCCCCCHHHHH-HHHHHHHhc--CCCEEEEEECccCCCcHHH-----------HHHHHHHHHHHhCCC
Confidence            56799999999998778888776 787666544  7999999999999754210           011222223344565


Q ss_pred             ceEEEcccCCCCCHHHHHHHHHH
Q psy15714        172 AEYLECSAKLNEGLDQVFIAAVR  194 (205)
Q Consensus       172 ~~~~~~Sa~~~~~i~~~~~~i~~  194 (205)
                      . ++++||++++|++++++.+..
T Consensus       184 ~-v~~vSA~tg~GideL~~~L~~  205 (347)
T PRK12288        184 R-VLMVSSHTGEGLEELEAALTG  205 (347)
T ss_pred             e-EEEEeCCCCcCHHHHHHHHhh
Confidence            4 999999999999999998864

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=98.83  E-value=5.4e-08  Score=73.04  Aligned_cols=163  Identities=17%  Similarity=0.147  Sum_probs=100.3

Q ss_pred             ccceeeEEEEECCCCCCHHHHHHHHhcC---CC---CCCCc-----Ccc---cccc---ceeEEECCEEEEEEEEEcCCC
Q psy15714         19 SVHKALKVTTVGDGMVGKTCLLITHTEN---KF---PTDYV-----PTV---FDNY---PDTITVDNKTYDVTLWDTAGQ   81 (205)
Q Consensus        19 ~~~~~~ki~v~G~~~~GKstli~~~~~~---~~---~~~~~-----~t~---~~~~---~~~~~~~~~~~~~~i~D~~g~   81 (205)
                      ..+.-++|..+|.-+-|||||..++..-   +.   ...|.     |..   +...   ...+...+.  .+.-.|+|||
T Consensus         8 r~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~r--hyahVDcPGH   85 (394)
T COG0050           8 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANR--HYAHVDCPGH   85 (394)
T ss_pred             CCCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCc--eEEeccCCCh
Confidence            3456689999999999999998766531   10   01111     111   1111   112222333  3555699999


Q ss_pred             cccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCC-EEEEeeCcccccCchhhhhhhhhccccccHH
Q psy15714         82 EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVP-IILVGTKADLRSENKTIDKKKAAEVDLVSTS  160 (205)
Q Consensus        82 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~  160 (205)
                      ..|-.....-..+.|+.|+|++++|...-+..  +.+-..++.  .+| +++++||+|+.++....         .+-..
T Consensus        86 aDYvKNMItgAaqmDgAILVVsA~dGpmPqTr--EHiLlarqv--Gvp~ivvflnK~Dmvdd~ell---------elVem  152 (394)
T COG0050          86 ADYVKNMITGAAQMDGAILVVAATDGPMPQTR--EHILLARQV--GVPYIVVFLNKVDMVDDEELL---------ELVEM  152 (394)
T ss_pred             HHHHHHHhhhHHhcCccEEEEEcCCCCCCcch--hhhhhhhhc--CCcEEEEEEecccccCcHHHH---------HHHHH
Confidence            99988777778889999999999986543332  122222233  675 56899999999865332         23455


Q ss_pred             HHHHHHHHcCCc----eEEEcccCCC-CC-------HHHHHHHHHHHH
Q psy15714        161 QGKKMRRKIKAA----EYLECSAKLN-EG-------LDQVFIAAVRSA  196 (205)
Q Consensus       161 ~~~~~~~~~~~~----~~~~~Sa~~~-~~-------i~~~~~~i~~~~  196 (205)
                      +.+++...++..    |++.-||... +|       |.+|.+.+-+.+
T Consensus       153 EvreLLs~y~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yi  200 (394)
T COG0050         153 EVRELLSEYGFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYI  200 (394)
T ss_pred             HHHHHHHHcCCCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcC
Confidence            778888888653    5777777653 22       455555554443

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=98.82  E-value=4.5e-08  Score=75.95  Aligned_cols=170  Identities=19%  Similarity=0.147  Sum_probs=103.9

Q ss_pred             ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcc----------ccccce-----eEEEC----------------
Q psy15714         19 SVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV----------FDNYPD-----TITVD----------------   67 (205)
Q Consensus        19 ~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~----------~~~~~~-----~~~~~----------------   67 (205)
                      .....+.+.+.|..+.|||||+..+..+...+..-.+.          ....+.     .+-++                
T Consensus       113 ~~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~  192 (527)
T COG5258         113 EAPEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEK  192 (527)
T ss_pred             CCCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHH
Confidence            35567899999999999999998888766543211110          000000     11111                


Q ss_pred             -----CEEEEEEEEEcCCCcccccc--cccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccc
Q psy15714         68 -----NKTYDVTLWDTAGQEDYERL--RPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLR  140 (205)
Q Consensus        68 -----~~~~~~~i~D~~g~~~~~~~--~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  140 (205)
                           ....-+.+.|+.||+.|-.+  +-.+-+..|..++++.+++.-+.-.  .+.+..+...  ..|++++.||+|+.
T Consensus       193 ~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~t--kEHLgi~~a~--~lPviVvvTK~D~~  268 (527)
T COG5258         193 AAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMT--KEHLGIALAM--ELPVIVVVTKIDMV  268 (527)
T ss_pred             hHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhh--hHhhhhhhhh--cCCEEEEEEecccC
Confidence                 11234677899999998654  3334567899999999988755333  3566666655  89999999999997


Q ss_pred             cCchhhhhh-------hhhc-cc--cccHH----HHHHHHHHcCCceEEEcccCCCCCHHHHHHHH
Q psy15714        141 SENKTIDKK-------KAAE-VD--LVSTS----QGKKMRRKIKAAEYLECSAKLNEGLDQVFIAA  192 (205)
Q Consensus       141 ~~~~~~~~~-------~~~~-~~--~~~~~----~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i  192 (205)
                      .+.......       +... ..  .-+..    .+.......+..|++.+|+.+|+|++-+.+.+
T Consensus       269 ~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f  334 (527)
T COG5258         269 PDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFF  334 (527)
T ss_pred             cHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHH
Confidence            664432211       1100 00  00111    23333333457789999999999986544433

>cd01858 NGP_1 NGP-1

Probab=98.78  E-value=3.6e-08  Score=69.14  Aligned_cols=90  Identities=13%  Similarity=0.082  Sum_probs=59.5

Q ss_pred             CcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcC
Q psy15714         91 SYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIK  170 (205)
Q Consensus        91 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (205)
                      .+..+|++++|.|+.++..-.+  ..+...+.....+.|+++|+||+|+....            . .......+.+.+.
T Consensus         5 ~l~~aD~il~VvD~~~p~~~~~--~~i~~~l~~~~~~~p~ilVlNKiDl~~~~------------~-~~~~~~~~~~~~~   69 (157)
T cd01858           5 VIDSSDVVIQVLDARDPMGTRC--KHVEEYLKKEKPHKHLIFVLNKCDLVPTW------------V-TARWVKILSKEYP   69 (157)
T ss_pred             hhhhCCEEEEEEECCCCccccC--HHHHHHHHhccCCCCEEEEEEchhcCCHH------------H-HHHHHHHHhcCCc
Confidence            4678999999999988743211  13444444333469999999999996432            1 1122333333222


Q ss_pred             CceEEEcccCCCCCHHHHHHHHHHHH
Q psy15714        171 AAEYLECSAKLNEGLDQVFIAAVRSA  196 (205)
Q Consensus       171 ~~~~~~~Sa~~~~~i~~~~~~i~~~~  196 (205)
                      .. .+.+||+.+.|++++.+.+.+.+
T Consensus        70 ~~-~~~iSa~~~~~~~~L~~~l~~~~   94 (157)
T cd01858          70 TI-AFHASINNPFGKGSLIQLLRQFS   94 (157)
T ss_pred             EE-EEEeeccccccHHHHHHHHHHHH
Confidence            22 57899999999999999987654

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.77  E-value=2.2e-08  Score=68.93  Aligned_cols=53  Identities=26%  Similarity=0.207  Sum_probs=37.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccc-ccceeEEECCEEEEEEEEEcCCC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFD-NYPDTITVDNKTYDVTLWDTAGQ   81 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~D~~g~   81 (205)
                      +++++|.+|+|||||+|++.+...... ....+. .....+.+++   .+.||||||-
T Consensus        85 ~~~~~G~~~vGKstlin~l~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~i~DtpG~  138 (141)
T cd01857          85 TIGLVGYPNVGKSSLINALVGKKKVSV-SATPGKTKHFQTIFLTP---TITLCDCPGL  138 (141)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceee-CCCCCcccceEEEEeCC---CEEEEECCCc
Confidence            899999999999999999998776421 122222 2223444444   5799999994

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>KOG2486|consensus

Probab=98.73  E-value=1e-08  Score=76.26  Aligned_cols=165  Identities=17%  Similarity=0.093  Sum_probs=91.3

Q ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcC-ccccccceeEEECCEEEEEEEEEcCC----------Cccccccc
Q psy15714         20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVP-TVFDNYPDTITVDNKTYDVTLWDTAG----------QEDYERLR   88 (205)
Q Consensus        20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~~i~D~~g----------~~~~~~~~   88 (205)
                      ..+..+++++|-.++|||+|++.++..+....... ..+..  ..+..-.....+.+.|.||          ...+....
T Consensus       133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~T--q~in~f~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~t  210 (320)
T KOG2486|consen  133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKT--QAINHFHVGKSWYEVDLPGYGRAGYGFELPADWDKFT  210 (320)
T ss_pred             CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccc--eeeeeeeccceEEEEecCCcccccCCccCcchHhHhH
Confidence            45678999999999999999999887765433222 22222  2222222224577789999          12222222


Q ss_pred             ccCcCCC---cEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHH-HHH
Q psy15714         89 PMSYPNT---DCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQ-GKK  164 (205)
Q Consensus        89 ~~~~~~~---~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~  164 (205)
                      ..++.+.   --+.+++|++-+-.-.+.  ..+..+.+.  ++|+.+|.||+|....-..-...     ...+..+ .+.
T Consensus       211 ~~Y~leR~nLv~~FLLvd~sv~i~~~D~--~~i~~~ge~--~VP~t~vfTK~DK~k~~~~~~kK-----p~~~i~~~f~~  281 (320)
T KOG2486|consen  211 KSYLLERENLVRVFLLVDASVPIQPTDN--PEIAWLGEN--NVPMTSVFTKCDKQKKVKRTGKK-----PGLNIKINFQG  281 (320)
T ss_pred             HHHHHhhhhhheeeeeeeccCCCCCCCh--HHHHHHhhc--CCCeEEeeehhhhhhhccccccC-----ccccceeehhh
Confidence            2333222   224445565543222221  233445555  99999999999986543210000     0011111 111


Q ss_pred             HHHHc--CCceEEEcccCCCCCHHHHHHHHHHH
Q psy15714        165 MRRKI--KAAEYLECSAKLNEGLDQVFIAAVRS  195 (205)
Q Consensus       165 ~~~~~--~~~~~~~~Sa~~~~~i~~~~~~i~~~  195 (205)
                      +....  ...|++.+|+.++.|+++++-.+.+.
T Consensus       282 l~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q~  314 (320)
T KOG2486|consen  282 LIRGVFLVDLPWIYVSSVTSLGRDLLLLHIAQL  314 (320)
T ss_pred             ccccceeccCCceeeecccccCceeeeeehhhh
Confidence            21111  22347789999999999998777654

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.66  E-value=1.6e-07  Score=65.76  Aligned_cols=82  Identities=18%  Similarity=0.144  Sum_probs=54.6

Q ss_pred             cEEEEEEECCCcchHHHHHHHHHH--HHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCce
Q psy15714         96 DCFLLCFSIGSTSSYENILSKWYP--ELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAE  173 (205)
Q Consensus        96 ~~~i~v~d~~~~~s~~~~~~~~~~--~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (205)
                      |++++|+|+.++.+...   .++.  .+..  .++|+++|+||+|+....            .+ .+....+....+ ..
T Consensus         1 Dvvl~VvD~~~p~~~~~---~~i~~~~~~~--~~~p~IiVlNK~Dl~~~~------------~~-~~~~~~~~~~~~-~~   61 (155)
T cd01849           1 DVILEVLDARDPLGTRS---PDIERVLIKE--KGKKLILVLNKADLVPKE------------VL-RKWLAYLRHSYP-TI   61 (155)
T ss_pred             CEEEEEEeccCCccccC---HHHHHHHHhc--CCCCEEEEEechhcCCHH------------HH-HHHHHHHHhhCC-ce
Confidence            78999999988765443   2322  2222  389999999999985431            10 111122322223 34


Q ss_pred             EEEcccCCCCCHHHHHHHHHHHH
Q psy15714        174 YLECSAKLNEGLDQVFIAAVRSA  196 (205)
Q Consensus       174 ~~~~Sa~~~~~i~~~~~~i~~~~  196 (205)
                      ++.+||+++.|++++++.+.+..
T Consensus        62 ii~vSa~~~~gi~~L~~~i~~~~   84 (155)
T cd01849          62 PFKISATNGQGIEKKESAFTKQT   84 (155)
T ss_pred             EEEEeccCCcChhhHHHHHHHHh
Confidence            78999999999999999987754

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=98.65  E-value=9.7e-07  Score=60.76  Aligned_cols=113  Identities=19%  Similarity=0.199  Sum_probs=66.4

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcC-CCcc--------------c-
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTA-GQED--------------Y-   84 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~-g~~~--------------~-   84 (205)
                      ...+||+|.|+||+||||++.++.+.--...  -..+..+...+.-+|+.+-|.|.|+. |...              | 
T Consensus         3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~~g--~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~   80 (179)
T COG1618           3 KMAMKIFITGRPGVGKTTLVLKIAEKLREKG--YKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYG   80 (179)
T ss_pred             CcceEEEEeCCCCccHHHHHHHHHHHHHhcC--ceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEE
Confidence            4568999999999999999977664322111  22344455667778888888998987 4211              1 


Q ss_pred             ------c----cccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCccc
Q psy15714         85 ------E----RLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADL  139 (205)
Q Consensus        85 ------~----~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl  139 (205)
                            .    ...+..++.+|++|+  |=--+-.+..  ..+...+.... .+.|++..+.+.+.
T Consensus        81 V~v~~le~i~~~al~rA~~~aDvIII--DEIGpMElks--~~f~~~ve~vl~~~kpliatlHrrsr  142 (179)
T COG1618          81 VNVEGLEEIAIPALRRALEEADVIII--DEIGPMELKS--KKFREAVEEVLKSGKPLIATLHRRSR  142 (179)
T ss_pred             eeHHHHHHHhHHHHHHHhhcCCEEEE--ecccchhhcc--HHHHHHHHHHhcCCCcEEEEEecccC
Confidence                  0    011223445666554  3222222222  24445555444 57888888877653

>KOG0410|consensus

Probab=98.65  E-value=4.7e-08  Score=74.28  Aligned_cols=150  Identities=20%  Similarity=0.216  Sum_probs=91.9

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCC-CCcCccccccceeEEE-CCEEEEEEEEEcCCCc---------ccccccc
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTENKFPT-DYVPTVFDNYPDTITV-DNKTYDVTLWDTAGQE---------DYERLRP   89 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~-~~~~t~~~~~~~~~~~-~~~~~~~~i~D~~g~~---------~~~~~~~   89 (205)
                      ....-|.|+|-.++|||||++++++....+ +....+-+.-...... .|.  .+.+.||-|-.         .|+....
T Consensus       176 ~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~--~vlltDTvGFisdLP~~LvaAF~ATLe  253 (410)
T KOG0410|consen  176 ESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGN--FVLLTDTVGFISDLPIQLVAAFQATLE  253 (410)
T ss_pred             CCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCc--EEEEeechhhhhhCcHHHHHHHHHHHH
Confidence            344568999999999999999999544322 1111111111122222 233  35556998832         2344333


Q ss_pred             cCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhC-CCCC----EEEEeeCcccccCchhhhhhhhhccccccHHHHHH
Q psy15714         90 MSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVP----IILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKK  164 (205)
Q Consensus        90 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p----~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  164 (205)
                       ....+|+++=|.|+++|..-... ...+..++... +..|    ++=|-||+|.......             .     
T Consensus       254 -eVaeadlllHvvDiShP~ae~q~-e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e-------------~-----  313 (410)
T KOG0410|consen  254 -EVAEADLLLHVVDISHPNAEEQR-ETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVE-------------E-----  313 (410)
T ss_pred             -HHhhcceEEEEeecCCccHHHHH-HHHHHHHHhcCCCcHHHHhHHHhhccccccccccCc-------------c-----
Confidence             35679999999999998744443 36677777763 2333    4556777776554211             1     


Q ss_pred             HHHHcCCceEEEcccCCCCCHHHHHHHHHHHHH
Q psy15714        165 MRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV  197 (205)
Q Consensus       165 ~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~  197 (205)
                        ...+   .+.+||.+|+|++++...+-....
T Consensus       314 --E~n~---~v~isaltgdgl~el~~a~~~kv~  341 (410)
T KOG0410|consen  314 --EKNL---DVGISALTGDGLEELLKAEETKVA  341 (410)
T ss_pred             --ccCC---ccccccccCccHHHHHHHHHHHhh
Confidence              1111   477999999999999987766543

>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A

Probab=98.63  E-value=2e-06  Score=68.12  Aligned_cols=155  Identities=16%  Similarity=0.189  Sum_probs=97.3

Q ss_pred             eeeEEEEECCCCCCHHHHHHHHhcCC-----------------CCC----CCcCccccccc----eeEEE-CCEEEEEEE
Q psy15714         22 KALKVTTVGDGMVGKTCLLITHTENK-----------------FPT----DYVPTVFDNYP----DTITV-DNKTYDVTL   75 (205)
Q Consensus        22 ~~~ki~v~G~~~~GKstli~~~~~~~-----------------~~~----~~~~t~~~~~~----~~~~~-~~~~~~~~i   75 (205)
                      ..+=|.|+|+..+||||||+||..--                 .++    .+..|+..-+.    ..+.+ ++..+++.+
T Consensus        16 GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRL   95 (492)
T PF09547_consen   16 GDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRL   95 (492)
T ss_pred             CceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEE
Confidence            34678999999999999999998532                 111    22223333331    23333 577899999


Q ss_pred             EEcCC--------C---cccccc------------------cccCcCC--CcEEEEEEECC----CcchHHHHHHHHHHH
Q psy15714         76 WDTAG--------Q---EDYERL------------------RPMSYPN--TDCFLLCFSIG----STSSYENILSKWYPE  120 (205)
Q Consensus        76 ~D~~g--------~---~~~~~~------------------~~~~~~~--~~~~i~v~d~~----~~~s~~~~~~~~~~~  120 (205)
                      .|+-|        +   +.-|..                  .+-.++.  .=++|+.-|.+    .++.+.++.+..+..
T Consensus        96 iDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~E  175 (492)
T PF09547_consen   96 IDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEE  175 (492)
T ss_pred             EeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHH
Confidence            99988        0   000100                  1112222  23445554543    457888888888999


Q ss_pred             HhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCC--CCCHHHHHHHHH
Q psy15714        121 LKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKL--NEGLDQVFIAAV  193 (205)
Q Consensus       121 ~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~--~~~i~~~~~~i~  193 (205)
                      |+..  +.|++|++|-.+-..              .-+.+.+.++...++.. ++.+++..  .+.|..+++.++
T Consensus       176 Lk~i--gKPFvillNs~~P~s--------------~et~~L~~eL~ekY~vp-Vlpvnc~~l~~~DI~~Il~~vL  233 (492)
T PF09547_consen  176 LKEI--GKPFVILLNSTKPYS--------------EETQELAEELEEKYDVP-VLPVNCEQLREEDITRILEEVL  233 (492)
T ss_pred             HHHh--CCCEEEEEeCCCCCC--------------HHHHHHHHHHHHHhCCc-EEEeehHHcCHHHHHHHHHHHH
Confidence            9988  999999999887433              34556677777777777 76666653  345555555544

It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=98.60  E-value=7.4e-07  Score=72.63  Aligned_cols=116  Identities=20%  Similarity=0.182  Sum_probs=77.4

Q ss_pred             ccccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCc
Q psy15714         17 SKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTD   96 (205)
Q Consensus        17 ~~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   96 (205)
                      ......++-++|+|+||+|||||++.+...-...    |+.......-.+.|+.-.+++..+|..  ...+ .....-+|
T Consensus        63 p~d~PPPfIvavvGPpGtGKsTLirSlVrr~tk~----ti~~i~GPiTvvsgK~RRiTflEcp~D--l~~m-iDvaKIaD  135 (1077)
T COG5192          63 PKDLPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQ----TIDEIRGPITVVSGKTRRITFLECPSD--LHQM-IDVAKIAD  135 (1077)
T ss_pred             cccCCCCeEEEeecCCCCChhHHHHHHHHHHHHh----hhhccCCceEEeecceeEEEEEeChHH--HHHH-HhHHHhhh
Confidence            3456678899999999999999998776543211    111111112235678888999999932  3333 23567799


Q ss_pred             EEEEEEECCCcchHHHHHHHHHHHHhhhCCCCC-EEEEeeCcccccCc
Q psy15714         97 CFLLCFSIGSTSSYENILSKWYPELKHHCPKVP-IILVGTKADLRSEN  143 (205)
Q Consensus        97 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~  143 (205)
                      ++++++|..-.-..+.+  +++.++..+  +.| ++-|+|..|+....
T Consensus       136 LVlLlIdgnfGfEMETm--EFLnil~~H--GmPrvlgV~ThlDlfk~~  179 (1077)
T COG5192         136 LVLLLIDGNFGFEMETM--EFLNILISH--GMPRVLGVVTHLDLFKNP  179 (1077)
T ss_pred             eeEEEeccccCceehHH--HHHHHHhhc--CCCceEEEEeecccccCh
Confidence            99999998655444444  566666665  555 55789999998764

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=98.57  E-value=1.9e-07  Score=66.31  Aligned_cols=56  Identities=23%  Similarity=0.242  Sum_probs=36.9

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCC
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAG   80 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g   80 (205)
                      ...++++++|.|++|||||+|++.+.+.... .+..+... ...+..+.   .+.++|+||
T Consensus       115 ~~~~~~~~vG~pnvGKSslin~l~~~~~~~~-~~~pg~T~~~~~~~~~~---~~~l~DtPG  171 (172)
T cd04178         115 KTSITVGVVGFPNVGKSSLINSLKRSRACNV-GATPGVTKSMQEVHLDK---KVKLLDSPG  171 (172)
T ss_pred             ccCcEEEEEcCCCCCHHHHHHHHhCccccee-cCCCCeEcceEEEEeCC---CEEEEECcC
Confidence            3458999999999999999999998764221 12222222 12233322   478899998

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>cd01858 NGP_1 NGP-1

Probab=98.57  E-value=1.7e-07  Score=65.75  Aligned_cols=55  Identities=25%  Similarity=0.270  Sum_probs=34.9

Q ss_pred             eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccc-eeEEECCEEEEEEEEEcCC
Q psy15714         22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYP-DTITVDNKTYDVTLWDTAG   80 (205)
Q Consensus        22 ~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g   80 (205)
                      ..++|+++|.+|+|||||+|++.+...... .++.+.... ..+..++   .+.+.||||
T Consensus       101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~liDtPG  156 (157)
T cd01858         101 KQISVGFIGYPNVGKSSIINTLRSKKVCKV-APIPGETKVWQYITLMK---RIYLIDCPG  156 (157)
T ss_pred             cceEEEEEeCCCCChHHHHHHHhcCCceee-CCCCCeeEeEEEEEcCC---CEEEEECcC
Confidence            467899999999999999999998654211 111222211 1222222   367889998

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>PRK13796 GTPase YqeH; Provisional

Probab=98.57  E-value=3.8e-07  Score=72.49  Aligned_cols=94  Identities=21%  Similarity=0.300  Sum_probs=63.7

Q ss_pred             ccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHH--
Q psy15714         83 DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTS--  160 (205)
Q Consensus        83 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~--  160 (205)
                      .|.......-...+.+++|+|+.|...      .|...+.+...+.|+++|+||+|+...             ....+  
T Consensus        58 ~~~~~l~~i~~~~~lIv~VVD~~D~~~------s~~~~L~~~~~~kpviLViNK~DLl~~-------------~~~~~~i  118 (365)
T PRK13796         58 DFLKLLNGIGDSDALVVNVVDIFDFNG------SWIPGLHRFVGNNPVLLVGNKADLLPK-------------SVKKNKV  118 (365)
T ss_pred             HHHHHHHhhcccCcEEEEEEECccCCC------chhHHHHHHhCCCCEEEEEEchhhCCC-------------ccCHHHH
Confidence            455544434334459999999877531      355555555557899999999999653             22222  


Q ss_pred             --HHHHHHHHcCCc--eEEEcccCCCCCHHHHHHHHHHH
Q psy15714        161 --QGKKMRRKIKAA--EYLECSAKLNEGLDQVFIAAVRS  195 (205)
Q Consensus       161 --~~~~~~~~~~~~--~~~~~Sa~~~~~i~~~~~~i~~~  195 (205)
                        ....+++..+..  .++.+||++++|++++++.+.+.
T Consensus       119 ~~~l~~~~k~~g~~~~~v~~vSAk~g~gI~eL~~~I~~~  157 (365)
T PRK13796        119 KNWLRQEAKELGLRPVDVVLISAQKGHGIDELLEAIEKY  157 (365)
T ss_pred             HHHHHHHHHhcCCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence              333445555552  47999999999999999998764

>KOG1491|consensus

Probab=98.55  E-value=9e-07  Score=67.80  Aligned_cols=87  Identities=21%  Similarity=0.166  Sum_probs=55.6

Q ss_pred             ccceeeEEEEECCCCCCHHHHHHHHhcCCCC-CCCcCccccccceeEEEC---------------CEEEEEEEEEcCCCc
Q psy15714         19 SVHKALKVTTVGDGMVGKTCLLITHTENKFP-TDYVPTVFDNYPDTITVD---------------NKTYDVTLWDTAGQE   82 (205)
Q Consensus        19 ~~~~~~ki~v~G~~~~GKstli~~~~~~~~~-~~~~~t~~~~~~~~~~~~---------------~~~~~~~i~D~~g~~   82 (205)
                      .....+++.++|.|++|||||+|++++.... .+++.++.+...-.+.+.               -....++++|++|--
T Consensus        16 R~~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLv   95 (391)
T KOG1491|consen   16 RDGNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLV   95 (391)
T ss_pred             CCCCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccc
Confidence            4457789999999999999999999987653 344444433222222222               235679999999832


Q ss_pred             c----cccc---cccCcCCCcEEEEEEECC
Q psy15714         83 D----YERL---RPMSYPNTDCFLLCFSIG  105 (205)
Q Consensus        83 ~----~~~~---~~~~~~~~~~~i~v~d~~  105 (205)
                      +    -+.+   +=.-++.+|+++=|+++.
T Consensus        96 kGAs~G~GLGN~FLs~iR~vDaifhVVr~f  125 (391)
T KOG1491|consen   96 KGASAGEGLGNKFLSHIRHVDAIFHVVRAF  125 (391)
T ss_pred             cCcccCcCchHHHHHhhhhccceeEEEEec
Confidence            2    1122   122356788887777643

>KOG1954|consensus

Probab=98.53  E-value=5.3e-07  Score=69.85  Aligned_cols=117  Identities=20%  Similarity=0.158  Sum_probs=73.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccce-eEE-------ECC---------------------------
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPD-TIT-------VDN---------------------------   68 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~-~~~-------~~~---------------------------   68 (205)
                      .=|+++|.-..||||+|+.++...++........+.-.. .+.       ++|                           
T Consensus        59 Pmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~c  138 (532)
T KOG1954|consen   59 PMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFMC  138 (532)
T ss_pred             ceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHHHH
Confidence            458999999999999999999988864332222111111 111       111                           


Q ss_pred             ------EEEEEEEEEcCCCcc-----------cccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEE
Q psy15714         69 ------KTYDVTLWDTAGQED-----------YERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPII  131 (205)
Q Consensus        69 ------~~~~~~i~D~~g~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i  131 (205)
                            .--+++|.|+||--.           |....+-|...+|.++++||+-...--.+.. ..+..++.+  .-.+=
T Consensus       139 sqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~-~vi~aLkG~--EdkiR  215 (532)
T KOG1954|consen  139 SQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFK-RVIDALKGH--EDKIR  215 (532)
T ss_pred             hcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHH-HHHHHhhCC--cceeE
Confidence                  012478899999322           2223334578899999999976544333333 455555544  55567


Q ss_pred             EEeeCcccccCc
Q psy15714        132 LVGTKADLRSEN  143 (205)
Q Consensus       132 vv~nK~Dl~~~~  143 (205)
                      ||+||.|..+..
T Consensus       216 VVLNKADqVdtq  227 (532)
T KOG1954|consen  216 VVLNKADQVDTQ  227 (532)
T ss_pred             EEeccccccCHH
Confidence            899999966554

>cd01859 MJ1464 MJ1464

Probab=98.51  E-value=3.5e-07  Score=64.00  Aligned_cols=55  Identities=24%  Similarity=0.273  Sum_probs=38.0

Q ss_pred             eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccccee-EEECCEEEEEEEEEcCC
Q psy15714         22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDT-ITVDNKTYDVTLWDTAG   80 (205)
Q Consensus        22 ~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~~i~D~~g   80 (205)
                      ...+++++|.+++|||||++++.+... ..+.++.+...... +..++   .+.+|||||
T Consensus       100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~-~~~~~~~~~t~~~~~~~~~~---~~~~~DtpG  155 (156)
T cd01859         100 KEGKVGVVGYPNVGKSSIINALKGRHS-ASTSPSPGYTKGEQLVKITS---KIYLLDTPG  155 (156)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCc-cccCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence            457899999999999999999997553 33344444433222 22222   589999998

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.51  E-value=3.8e-07  Score=62.74  Aligned_cols=77  Identities=17%  Similarity=0.063  Sum_probs=50.5

Q ss_pred             CcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcC
Q psy15714         91 SYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIK  170 (205)
Q Consensus        91 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (205)
                      .+..+|++++|+|+.++.+..+.  .+...+.....+.|+++|+||+|+....            .  ..+.....+..+
T Consensus         8 ~i~~aD~vl~ViD~~~p~~~~~~--~l~~~l~~~~~~k~~iivlNK~DL~~~~------------~--~~~~~~~~~~~~   71 (141)
T cd01857           8 VVERSDIVVQIVDARNPLLFRPP--DLERYVKEVDPRKKNILLLNKADLLTEE------------Q--RKAWAEYFKKEG   71 (141)
T ss_pred             HHhhCCEEEEEEEccCCcccCCH--HHHHHHHhccCCCcEEEEEechhcCCHH------------H--HHHHHHHHHhcC
Confidence            57889999999999887654421  2333333333579999999999986432            1  122333444445


Q ss_pred             CceEEEcccCCCCC
Q psy15714        171 AAEYLECSAKLNEG  184 (205)
Q Consensus       171 ~~~~~~~Sa~~~~~  184 (205)
                      .. ++.+||.++.+
T Consensus        72 ~~-ii~iSa~~~~~   84 (141)
T cd01857          72 IV-VVFFSALKENA   84 (141)
T ss_pred             Ce-EEEEEecCCCc
Confidence            44 89999998764

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>cd01856 YlqF YlqF

Probab=98.50  E-value=3.2e-07  Score=65.28  Aligned_cols=57  Identities=21%  Similarity=0.169  Sum_probs=38.3

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCC
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQ   81 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~   81 (205)
                      ...++++++|.+++|||||++++.+..+.. .....++.. ...+.++   ..+.+|||||-
T Consensus       113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~-~~~~~~~T~~~~~~~~~---~~~~~iDtpG~  170 (171)
T cd01856         113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAK-VGNKPGVTKGIQWIKIS---PGIYLLDTPGI  170 (171)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCcee-ecCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence            345799999999999999999999877532 122222222 2223333   35789999994

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>KOG0448|consensus

Probab=98.47  E-value=1.1e-06  Score=72.74  Aligned_cols=121  Identities=15%  Similarity=0.267  Sum_probs=75.0

Q ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccce-------------------------------------
Q psy15714         20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPD-------------------------------------   62 (205)
Q Consensus        20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~-------------------------------------   62 (205)
                      .....||++.|...+||||++|+++..++-+.....+...+..                                     
T Consensus       106 ~r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~  185 (749)
T KOG0448|consen  106 ARRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKD  185 (749)
T ss_pred             hhcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccc
Confidence            3466899999999999999999999765533222111111100                                     


Q ss_pred             -------eEEECCE-----EEEEEEEEcCCCc---ccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCC
Q psy15714         63 -------TITVDNK-----TYDVTLWDTAGQE---DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPK  127 (205)
Q Consensus        63 -------~~~~~~~-----~~~~~i~D~~g~~---~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~  127 (205)
                             .+..+..     .-.+.+.|.||-+   ...+-...++..+|++|||.++.+.-+..+-  .++....+.  .
T Consensus       186 ~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek--~Ff~~vs~~--K  261 (749)
T KOG0448|consen  186 LGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEK--QFFHKVSEE--K  261 (749)
T ss_pred             cCcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHH--HHHHHhhcc--C
Confidence                   0000011     0136678899854   3344455678899999999998876554443  444444443  5


Q ss_pred             CCEEEEeeCcccccCch
Q psy15714        128 VPIILVGTKADLRSENK  144 (205)
Q Consensus       128 ~p~ivv~nK~Dl~~~~~  144 (205)
                      ..+.|+.||.|.....+
T Consensus       262 pniFIlnnkwDasase~  278 (749)
T KOG0448|consen  262 PNIFILNNKWDASASEP  278 (749)
T ss_pred             CcEEEEechhhhhcccH
Confidence            55678888889876543

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.47  E-value=5.2e-07  Score=69.11  Aligned_cols=57  Identities=21%  Similarity=0.211  Sum_probs=38.1

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCC
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQ   81 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~   81 (205)
                      ...++++++|.||+|||||+|++.+.+.... ....+... ...+.++.   .+.++||||-
T Consensus       116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~l~DtPG~  173 (276)
T TIGR03596       116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKV-GNRPGVTKGQQWIKLSD---GLELLDTPGI  173 (276)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCcccc-CCCCCeecceEEEEeCC---CEEEEECCCc
Confidence            3568999999999999999999997664221 11112221 22333332   4789999996

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>cd01856 YlqF YlqF

Probab=98.47  E-value=8.1e-07  Score=63.17  Aligned_cols=88  Identities=19%  Similarity=0.051  Sum_probs=58.5

Q ss_pred             cccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHH
Q psy15714         88 RPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRR  167 (205)
Q Consensus        88 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (205)
                      ....+.++|++++|+|+.++....+.  .+...    ..+.|+++|+||+|+....            ..  ....+..+
T Consensus        13 ~~~~i~~aD~il~v~D~~~~~~~~~~--~i~~~----~~~k~~ilVlNK~Dl~~~~------------~~--~~~~~~~~   72 (171)
T cd01856          13 IKEKLKLVDLVIEVRDARIPLSSRNP--LLEKI----LGNKPRIIVLNKADLADPK------------KT--KKWLKYFE   72 (171)
T ss_pred             HHHHHhhCCEEEEEeeccCccCcCCh--hhHhH----hcCCCEEEEEehhhcCChH------------HH--HHHHHHHH
Confidence            34578899999999999876543221  22222    2368999999999985421            11  11111222


Q ss_pred             HcCCceEEEcccCCCCCHHHHHHHHHHHH
Q psy15714        168 KIKAAEYLECSAKLNEGLDQVFIAAVRSA  196 (205)
Q Consensus       168 ~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~  196 (205)
                      ... ..++.+||++++|++++.+.+...+
T Consensus        73 ~~~-~~vi~iSa~~~~gi~~L~~~l~~~l  100 (171)
T cd01856          73 SKG-EKVLFVNAKSGKGVKKLLKAAKKLL  100 (171)
T ss_pred             hcC-CeEEEEECCCcccHHHHHHHHHHHH
Confidence            222 3378999999999999999998875

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.46  E-value=4.5e-07  Score=69.45  Aligned_cols=101  Identities=19%  Similarity=0.104  Sum_probs=65.1

Q ss_pred             cCCCcc-cccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhcccc
Q psy15714         78 TAGQED-YERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDL  156 (205)
Q Consensus        78 ~~g~~~-~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~  156 (205)
                      +|||.. ........+..+|++++|+|+.++.+..+.  .+...+    .+.|+++|+||+|+.+..            .
T Consensus         4 fpgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~--~i~~~l----~~kp~IiVlNK~DL~~~~------------~   65 (276)
T TIGR03596         4 FPGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNP--MIDEIR----GNKPRLIVLNKADLADPA------------V   65 (276)
T ss_pred             ChHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCCh--hHHHHH----CCCCEEEEEEccccCCHH------------H
Confidence            466643 222344578899999999999876543331  222222    368999999999986421            1


Q ss_pred             ccHHHHHHHHHHcCCceEEEcccCCCCCHHHHHHHHHHHHHhh
Q psy15714        157 VSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKK  199 (205)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  199 (205)
                       .......+ +..+. +++.+||.++.|++++.+.+.+.+...
T Consensus        66 -~~~~~~~~-~~~~~-~vi~iSa~~~~gi~~L~~~i~~~~~~~  105 (276)
T TIGR03596        66 -TKQWLKYF-EEKGI-KALAINAKKGKGVKKIIKAAKKLLKEK  105 (276)
T ss_pred             -HHHHHHHH-HHcCC-eEEEEECCCcccHHHHHHHHHHHHHHh
Confidence             11111222 22333 379999999999999999888776543

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>KOG0085|consensus

Probab=98.46  E-value=2.3e-07  Score=67.52  Aligned_cols=129  Identities=16%  Similarity=0.119  Sum_probs=76.1

Q ss_pred             EEEEEEEEcCCCcccccccccCcCCCcEEEEEEECCCc----------chHHHHHHHHHHHHhhh--CCCCCEEEEeeCc
Q psy15714         70 TYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGST----------SSYENILSKWYPELKHH--CPKVPIILVGTKA  137 (205)
Q Consensus        70 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~  137 (205)
                      ++.+.+.|.+|+..-+..|.+.+++.-.++|++..+..          ...++.. .+...+-.+  +.+.++|+++||.
T Consensus       198 ~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESk-ALFrTIi~yPWF~nssVIlFLNKk  276 (359)
T KOG0085|consen  198 KIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESK-ALFRTIITYPWFQNSSVILFLNKK  276 (359)
T ss_pred             hheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHH-HHHHHHhccccccCCceEEEechh
Confidence            34466778888777777777777777666666554421          2222222 222222222  2689999999999


Q ss_pred             ccccCchh----hhhhhhhccccccHHHHHHHHHHc---------CCceEEEcccCCCCCHHHHHHHHHHHHHhh
Q psy15714        138 DLRSENKT----IDKKKAAEVDLVSTSQGKKMRRKI---------KAAEYLECSAKLNEGLDQVFIAAVRSAVKK  199 (205)
Q Consensus       138 Dl~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  199 (205)
                      |+......    ..-....+..+.+.+.++++.-..         .+..-..++|.+.+||.-+|..+...++.-
T Consensus       277 DlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq~  351 (359)
T KOG0085|consen  277 DLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQL  351 (359)
T ss_pred             hhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHHh
Confidence            98765322    222222233344555555554332         112134578899999999999988887653

>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []

Probab=98.42  E-value=2.8e-06  Score=68.30  Aligned_cols=126  Identities=16%  Similarity=0.113  Sum_probs=81.0

Q ss_pred             EEEEEEEcCCCcccccccccCcCCCcEEEEEEECCCc----------chHHHHHHHHHHHHhhhC-CCCCEEEEeeCccc
Q psy15714         71 YDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGST----------SSYENILSKWYPELKHHC-PKVPIILVGTKADL  139 (205)
Q Consensus        71 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl  139 (205)
                      ..+.++|.||+...+..|..++.+++++|||+++++-          ..+.+....|-..+.... .+.|++|++||.|+
T Consensus       236 ~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~D~  315 (389)
T PF00503_consen  236 RKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKIDL  315 (389)
T ss_dssp             EEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-HHH
T ss_pred             cccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecHHH
Confidence            3568999999999999999999999999999998743          234444434444444433 68999999999998


Q ss_pred             ccCchhhh-----hh-hhhccccccHHHHHHHHHHc-----------CCceEEEcccCCCCCHHHHHHHHHHHH
Q psy15714        140 RSENKTID-----KK-KAAEVDLVSTSQGKKMRRKI-----------KAAEYLECSAKLNEGLDQVFIAAVRSA  196 (205)
Q Consensus       140 ~~~~~~~~-----~~-~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~Sa~~~~~i~~~~~~i~~~~  196 (205)
                      ....-...     .. +..+...-+.+.+..+....           ....+..++|.+..++..+|..+.+.+
T Consensus       316 f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~i  389 (389)
T PF00503_consen  316 FEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDII  389 (389)
T ss_dssp             HHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHHH
T ss_pred             HHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCcC
Confidence            54321111     11 11111012334444443331           112356899999999999999887654

G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....

>KOG0460|consensus

Probab=98.41  E-value=2.1e-06  Score=65.86  Aligned_cols=152  Identities=16%  Similarity=0.109  Sum_probs=93.3

Q ss_pred             ccccceeeEEEEECCCCCCHHHHHHHHhc----CCCCC--CCcCcc--ccccceeEEEC-------CEEEEEEEEEcCCC
Q psy15714         17 SKSVHKALKVTTVGDGMVGKTCLLITHTE----NKFPT--DYVPTV--FDNYPDTITVD-------NKTYDVTLWDTAGQ   81 (205)
Q Consensus        17 ~~~~~~~~ki~v~G~~~~GKstli~~~~~----~~~~~--~~~~t~--~~~~~~~~~~~-------~~~~~~~i~D~~g~   81 (205)
                      ....+..++|.-+|...-|||||-.++..    .....  .|....  ....-.-++++       -..-.+.=.|+|||
T Consensus        48 f~R~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGH  127 (449)
T KOG0460|consen   48 FVRDKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGH  127 (449)
T ss_pred             cccCCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCch
Confidence            34667789999999999999999866652    11100  000000  00000112221       11122344599999


Q ss_pred             cccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHH
Q psy15714         82 EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQ  161 (205)
Q Consensus        82 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~  161 (205)
                      .+|-.....-..+.|+.|+|+.++|...-+.-  +.+- +.+...-..++|++||.|+.++....         .+-+-+
T Consensus       128 ADYIKNMItGaaqMDGaILVVaatDG~MPQTr--EHlL-LArQVGV~~ivvfiNKvD~V~d~e~l---------eLVEmE  195 (449)
T KOG0460|consen  128 ADYIKNMITGAAQMDGAILVVAATDGPMPQTR--EHLL-LARQVGVKHIVVFINKVDLVDDPEML---------ELVEME  195 (449)
T ss_pred             HHHHHHhhcCccccCceEEEEEcCCCCCcchH--HHHH-HHHHcCCceEEEEEecccccCCHHHH---------HHHHHH
Confidence            99988888888899999999999997644442  2222 22222234578999999998654322         334556


Q ss_pred             HHHHHHHcCC----ceEEEcccC
Q psy15714        162 GKKMRRKIKA----AEYLECSAK  180 (205)
Q Consensus       162 ~~~~~~~~~~----~~~~~~Sa~  180 (205)
                      .+++...++.    .|++.-||.
T Consensus       196 ~RElLse~gf~Gd~~PvI~GSAL  218 (449)
T KOG0460|consen  196 IRELLSEFGFDGDNTPVIRGSAL  218 (449)
T ss_pred             HHHHHHHcCCCCCCCCeeecchh
Confidence            7888888754    457776665

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.39  E-value=1e-06  Score=67.92  Aligned_cols=57  Identities=21%  Similarity=0.219  Sum_probs=38.2

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCC
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQ   81 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~   81 (205)
                      ...++++++|.|++|||||+|++.+.+.... .+..+... ...+..++   .+.++||||-
T Consensus       119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~l~DtPGi  176 (287)
T PRK09563        119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKT-GNRPGVTKAQQWIKLGK---GLELLDTPGI  176 (287)
T ss_pred             cCceEEEEECCCCCCHHHHHHHHhcCCcccc-CCCCCeEEEEEEEEeCC---cEEEEECCCc
Confidence            3568999999999999999999998764221 12222222 12233332   4789999996

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=98.37  E-value=8.2e-06  Score=73.94  Aligned_cols=114  Identities=24%  Similarity=0.175  Sum_probs=64.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCC----cCc--cccccceeEEECCEEEEEEEEEcCCCcc--------cccccc
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTENKFPTDY----VPT--VFDNYPDTITVDNKTYDVTLWDTAGQED--------YERLRP   89 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~~~~~~~----~~t--~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~   89 (205)
                      .=.+|+|++|+||||++++. +-.++-..    ..+  .+......-++.+   +-.++|++|..-        ....|.
T Consensus       112 PWYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~wwf~~---~avliDtaG~y~~~~~~~~~~~~~W~  187 (1169)
T TIGR03348       112 PWYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWWFTD---EAVLIDTAGRYTTQDSDPEEDAAAWL  187 (1169)
T ss_pred             CCEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceEecC---CEEEEcCCCccccCCCcccccHHHHH
Confidence            34799999999999999765 33332110    001  1111111223333   355889999321        111122


Q ss_pred             c---------CcCCCcEEEEEEECCCcc-----hH----HHHHHHHHHHHhh-hCCCCCEEEEeeCcccccC
Q psy15714         90 M---------SYPNTDCFLLCFSIGSTS-----SY----ENILSKWYPELKH-HCPKVPIILVGTKADLRSE  142 (205)
Q Consensus        90 ~---------~~~~~~~~i~v~d~~~~~-----s~----~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~  142 (205)
                      .         .-+..|+||+++|+.+.-     ..    ..+. ..+..+.. ..-.+||.|++||+|+...
T Consensus       188 ~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR-~rl~el~~~lg~~~PVYvv~Tk~Dll~G  258 (1169)
T TIGR03348       188 GFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIR-QRLQELREQLGARFPVYLVLTKADLLAG  258 (1169)
T ss_pred             HHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHH-HHHHHHHHHhCCCCCEEEEEecchhhcC
Confidence            2         235689999999987542     11    2222 23333333 3368999999999998754

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>cd01855 YqeH YqeH

Probab=98.37  E-value=6.7e-07  Score=64.70  Aligned_cols=55  Identities=25%  Similarity=0.245  Sum_probs=34.8

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCC-------CCcCcccccc-ceeEEECCEEEEEEEEEcCC
Q psy15714         23 ALKVTTVGDGMVGKTCLLITHTENKFPT-------DYVPTVFDNY-PDTITVDNKTYDVTLWDTAG   80 (205)
Q Consensus        23 ~~ki~v~G~~~~GKstli~~~~~~~~~~-------~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g   80 (205)
                      ..+++++|.+|+|||||+|++.+.....       ......++.. ...+.++.   .+.|+||||
T Consensus       127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG  189 (190)
T cd01855         127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPG  189 (190)
T ss_pred             CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC---CCEEEeCcC
Confidence            3589999999999999999999754311       1111112222 22333332   478999998

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>TIGR00092 GTP-binding protein YchF

Probab=98.36  E-value=1.5e-06  Score=68.39  Aligned_cols=82  Identities=17%  Similarity=0.038  Sum_probs=55.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCC-C-CCCcCccccccceeEEECCE---------------EEEEEEEEcCCCccc--
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTENKF-P-TDYVPTVFDNYPDTITVDNK---------------TYDVTLWDTAGQEDY--   84 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~~~-~-~~~~~t~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~--   84 (205)
                      +++.++|.|++|||||++++++... . .+|+.++.......+.+.+.               ...+.+.|+||-..-  
T Consensus         3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs   82 (368)
T TIGR00092         3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS   82 (368)
T ss_pred             ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence            7999999999999999999998765 3 34455533333333333331               235788899995332  


Q ss_pred             --cc---ccccCcCCCcEEEEEEECC
Q psy15714         85 --ER---LRPMSYPNTDCFLLCFSIG  105 (205)
Q Consensus        85 --~~---~~~~~~~~~~~~i~v~d~~  105 (205)
                        ..   .+-..++.+|+++.|++..
T Consensus        83 ~g~Glgn~fL~~ir~~d~l~hVvr~f  108 (368)
T TIGR00092        83 KGEGLGNQFLANIREVDIIQHVVRCF  108 (368)
T ss_pred             cccCcchHHHHHHHhCCEEEEEEeCC
Confidence              11   1223478899999999974

This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.32  E-value=1.8e-06  Score=60.39  Aligned_cols=55  Identities=22%  Similarity=0.303  Sum_probs=36.2

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCC--CCcCccccccceeEEECCEEEEEEEEEcCC
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTENKFPT--DYVPTVFDNYPDTITVDNKTYDVTLWDTAG   80 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g   80 (205)
                      ....+++++|.+++|||||+|++.+.....  ....++..  ...+..+   ..+.++||||
T Consensus        98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~--~~~~~~~---~~~~liDtPG  154 (155)
T cd01849          98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTS--QQEVKLD---NKIKLLDTPG  154 (155)
T ss_pred             ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccc--eEEEEec---CCEEEEECCC
Confidence            456889999999999999999999865321  11122111  1222332   2478889998

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>KOG0447|consensus

Probab=98.30  E-value=2.8e-05  Score=63.45  Aligned_cols=70  Identities=23%  Similarity=0.306  Sum_probs=43.7

Q ss_pred             EEEEEEcCCCc-------------ccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcc
Q psy15714         72 DVTLWDTAGQE-------------DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKAD  138 (205)
Q Consensus        72 ~~~i~D~~g~~-------------~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D  138 (205)
                      .+.+.|+||-.             ....+...+..+.+++|+|+--.+-..-......+...+.-  .+...|+|++|.|
T Consensus       413 RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAERSnVTDLVsq~DP--~GrRTIfVLTKVD  490 (980)
T KOG0447|consen  413 RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAERSIVTDLVSQMDP--HGRRTIFVLTKVD  490 (980)
T ss_pred             eeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchhhhhHHHHHHhcCC--CCCeeEEEEeecc
Confidence            46678999922             22334557889999999998533332222222233333322  3788999999999


Q ss_pred             cccCc
Q psy15714        139 LRSEN  143 (205)
Q Consensus       139 l~~~~  143 (205)
                      +...+
T Consensus       491 lAEkn  495 (980)
T KOG0447|consen  491 LAEKN  495 (980)
T ss_pred             hhhhc
Confidence            98765

>PRK01889 GTPase RsgA; Reviewed

Probab=98.27  E-value=5.5e-06  Score=65.70  Aligned_cols=85  Identities=20%  Similarity=0.150  Sum_probs=57.4

Q ss_pred             CcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcC
Q psy15714         91 SYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIK  170 (205)
Q Consensus        91 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (205)
                      .+.++|.+++|.++...-....+. .++..+...  ++|.+||+||+||.+..            ....++...+  ..+
T Consensus       109 iaANvD~vliV~s~~p~~~~~~ld-r~L~~a~~~--~i~piIVLNK~DL~~~~------------~~~~~~~~~~--~~g  171 (356)
T PRK01889        109 IAANVDTVFIVCSLNHDFNLRRIE-RYLALAWES--GAEPVIVLTKADLCEDA------------EEKIAEVEAL--APG  171 (356)
T ss_pred             EEEeCCEEEEEEecCCCCChhHHH-HHHHHHHHc--CCCEEEEEEChhcCCCH------------HHHHHHHHHh--CCC
Confidence            368899999999986433333333 555555555  88999999999997531            1011122222  234


Q ss_pred             CceEEEcccCCCCCHHHHHHHHH
Q psy15714        171 AAEYLECSAKLNEGLDQVFIAAV  193 (205)
Q Consensus       171 ~~~~~~~Sa~~~~~i~~~~~~i~  193 (205)
                      .. ++.+|++++.|++++..++.
T Consensus       172 ~~-Vi~vSa~~g~gl~~L~~~L~  193 (356)
T PRK01889        172 VP-VLAVSALDGEGLDVLAAWLS  193 (356)
T ss_pred             Cc-EEEEECCCCccHHHHHHHhh
Confidence            44 89999999999999988874

>cd03112 CobW_like The function of this protein family is unkown

Probab=98.26  E-value=5e-06  Score=58.31  Aligned_cols=65  Identities=12%  Similarity=0.077  Sum_probs=37.6

Q ss_pred             EEEEEEEEcCCCcccccccc--------cCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCccc
Q psy15714         70 TYDVTLWDTAGQEDYERLRP--------MSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADL  139 (205)
Q Consensus        70 ~~~~~i~D~~g~~~~~~~~~--------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl  139 (205)
                      .....+.|++|-..-.....        ...-..+.+++++|+.+......-...+...++..     =+|++||+|+
T Consensus        86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~a-----d~ivlnk~dl  158 (158)
T cd03112          86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFA-----DRILLNKTDL  158 (158)
T ss_pred             CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHC-----CEEEEecccC
Confidence            45678889999643222211        12334788999999765433221122344444433     2679999996

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>KOG1534|consensus

Probab=98.26  E-value=7e-06  Score=59.05  Aligned_cols=125  Identities=17%  Similarity=0.151  Sum_probs=65.8

Q ss_pred             EEEEEEcCCCcccccc---cccC---cCC---CcEEEEEEECCCc-chHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccc
Q psy15714         72 DVTLWDTAGQEDYERL---RPMS---YPN---TDCFLLCFSIGST-SSYENILSKWYPELKHHC-PKVPIILVGTKADLR  140 (205)
Q Consensus        72 ~~~i~D~~g~~~~~~~---~~~~---~~~---~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~  140 (205)
                      .+.|+|+|||.+....   .+..   +..   .-.++|+.|..=- .+.+.+. -.+..+.... -.+|-|=|++|+||.
T Consensus        99 dylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiS-G~lsAlsAMi~lE~P~INvlsKMDLl  177 (273)
T KOG1534|consen   99 DYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFIS-GCLSALSAMISLEVPHINVLSKMDLL  177 (273)
T ss_pred             CEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHH-HHHHHHHHHHHhcCcchhhhhHHHHh
Confidence            4788999998763221   1111   111   2235555553211 1111111 1222222222 489999999999998


Q ss_pred             cCchhhhhhhhhccccc-----------c------HHHHHHHHHHcCCceEEEcccCCCCCHHHHHHHHHHHHH
Q psy15714        141 SENKTIDKKKAAEVDLV-----------S------TSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV  197 (205)
Q Consensus       141 ~~~~~~~~~~~~~~~~~-----------~------~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~  197 (205)
                      ......+..+++.....           +      ....-.+...++...+++....+.++|+.++..|-.++.
T Consensus       178 k~~~k~~l~~Fl~~d~~~l~~~~~~~~~s~Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeSi~~iL~~ID~aiQ  251 (273)
T KOG1534|consen  178 KDKNKKELERFLNPDEYLLLEDSEINLRSPKFKKLTKCIAQLVDDYSMVNFLPLDSSDEESINIILSYIDDAIQ  251 (273)
T ss_pred             hhhhHHHHHHhcCCchhhhhcccccccccHHHHHHHHHHHHHhccccceeeeecCCCCHHHHHHHHHHHHHHHH
Confidence            77433332222111111           0      001223334457777888888888899888887766554

>COG1161 Predicted GTPases [General function prediction only]

Probab=98.26  E-value=2.3e-06  Score=66.87  Aligned_cols=57  Identities=25%  Similarity=0.267  Sum_probs=38.9

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccc-eeEEECCEEEEEEEEEcCCC
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYP-DTITVDNKTYDVTLWDTAGQ   81 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~   81 (205)
                      ....++.|+|-|++|||||||++.+..... ..+..+.... ..+..+.   .+.++||||-
T Consensus       130 ~~~~~v~vvG~PNVGKSslIN~L~~k~~~~-~s~~PG~Tk~~q~i~~~~---~i~LlDtPGi  187 (322)
T COG1161         130 KRKIRVGVVGYPNVGKSTLINRLLGKKVAK-TSNRPGTTKGIQWIKLDD---GIYLLDTPGI  187 (322)
T ss_pred             ccceEEEEEcCCCCcHHHHHHHHhccccee-eCCCCceecceEEEEcCC---CeEEecCCCc
Confidence            455889999999999999999999887621 1222233332 2333333   2889999994

>KOG0465|consensus

Probab=98.24  E-value=8.3e-06  Score=67.03  Aligned_cols=120  Identities=16%  Similarity=0.118  Sum_probs=79.3

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcC--CCCC----CCcCccc----------ccc-ceeEEECCEEEEEEEEEcCCCcc
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTEN--KFPT----DYVPTVF----------DNY-PDTITVDNKTYDVTLWDTAGQED   83 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~--~~~~----~~~~t~~----------~~~-~~~~~~~~~~~~~~i~D~~g~~~   83 (205)
                      .+.-+|.+.-.-.+||||+-.+.+..  ....    ....++-          ... +-...+....+.+.|+|||||-.
T Consensus        37 ~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvD  116 (721)
T KOG0465|consen   37 NKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVD  116 (721)
T ss_pred             hhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCcee
Confidence            35557888888999999998765521  1100    0001110          000 00111233467899999999999


Q ss_pred             cccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCch
Q psy15714         84 YERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENK  144 (205)
Q Consensus        84 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~  144 (205)
                      |.---.+.++-.|++|+++++...-.-+... -| ..+.++  ++|.+.+.||+|.....+
T Consensus       117 FT~EVeRALrVlDGaVlvl~aV~GVqsQt~t-V~-rQ~~ry--~vP~i~FiNKmDRmGa~~  173 (721)
T KOG0465|consen  117 FTFEVERALRVLDGAVLVLDAVAGVESQTET-VW-RQMKRY--NVPRICFINKMDRMGASP  173 (721)
T ss_pred             EEEEehhhhhhccCeEEEEEcccceehhhHH-HH-HHHHhc--CCCeEEEEehhhhcCCCh
Confidence            9888788899999999999987765444432 34 445666  899999999999765543

>KOG3859|consensus

Probab=98.23  E-value=3.2e-06  Score=63.21  Aligned_cols=124  Identities=24%  Similarity=0.286  Sum_probs=76.8

Q ss_pred             ccccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccc-----eeEEECCEEEEEEEEEcCCC-------ccc
Q psy15714         17 SKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYP-----DTITVDNKTYDVTLWDTAGQ-------EDY   84 (205)
Q Consensus        17 ~~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~-----~~~~~~~~~~~~~i~D~~g~-------~~~   84 (205)
                      +....-.++|+.+|..|.|||||+..+++.+|.....+.....+.     ....-.+...+++|.|+.|-       +.|
T Consensus        36 sv~~GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Sy  115 (406)
T KOG3859|consen   36 SVSQGFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSY  115 (406)
T ss_pred             HHhcCceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCccccc
Confidence            345678899999999999999999999999886654544433331     22333567789999999981       112


Q ss_pred             cccc------------------c--cCcCCCcEEEEEEECC-CcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCc
Q psy15714         85 ERLR------------------P--MSYPNTDCFLLCFSIG-STSSYENILSKWYPELKHHCPKVPIILVGTKADLRSEN  143 (205)
Q Consensus        85 ~~~~------------------~--~~~~~~~~~i~v~d~~-~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~  143 (205)
                      ..+.                  +  ..+....+.+.+|-++ ...++..+.-   -.++.....+.+|-++-|.|-....
T Consensus       116 k~iVdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKslDL---vtmk~LdskVNIIPvIAKaDtisK~  192 (406)
T KOG3859|consen  116 KPIVDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSLDL---VTMKKLDSKVNIIPVIAKADTISKE  192 (406)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcchhHHHH---HHHHHHhhhhhhHHHHHHhhhhhHH
Confidence            1110                  0  1245555555555443 2345555432   2233333467788888899965443

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.20  E-value=8.6e-06  Score=62.79  Aligned_cols=102  Identities=18%  Similarity=0.116  Sum_probs=65.5

Q ss_pred             EcCCCcc-cccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccc
Q psy15714         77 DTAGQED-YERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVD  155 (205)
Q Consensus        77 D~~g~~~-~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~  155 (205)
                      -+|||.. -.......+..+|++++|+|+.++.+..+.  .+...+    .+.|+++|+||+|+.+..            
T Consensus         6 wfpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~--~l~~~~----~~kp~iiVlNK~DL~~~~------------   67 (287)
T PRK09563          6 WFPGHMAKARREIKENLKLVDVVIEVLDARIPLSSENP--MIDKII----GNKPRLLILNKSDLADPE------------   67 (287)
T ss_pred             CcHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCCh--hHHHHh----CCCCEEEEEEchhcCCHH------------
Confidence            4677653 222234578899999999999876543331  222222    278999999999985421            


Q ss_pred             cccHHHHHHHHHHcCCceEEEcccCCCCCHHHHHHHHHHHHHhh
Q psy15714        156 LVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKK  199 (205)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  199 (205)
                      . .......+ +..+. +++.+||+++.|++++.+.+.+.+...
T Consensus        68 ~-~~~~~~~~-~~~~~-~vi~vSa~~~~gi~~L~~~l~~~l~~~  108 (287)
T PRK09563         68 V-TKKWIEYF-EEQGI-KALAINAKKGQGVKKILKAAKKLLKEK  108 (287)
T ss_pred             H-HHHHHHHH-HHcCC-eEEEEECCCcccHHHHHHHHHHHHHHH
Confidence            1 11111112 22233 378999999999999999888776543

>KOG0464|consensus

Probab=98.14  E-value=3e-06  Score=66.82  Aligned_cols=118  Identities=17%  Similarity=0.104  Sum_probs=84.0

Q ss_pred             eeeEEEEECCCCCCHHHHHHHHhc--------CCCCCCCcCcc--------cccc-ceeEEECCEEEEEEEEEcCCCccc
Q psy15714         22 KALKVTTVGDGMVGKTCLLITHTE--------NKFPTDYVPTV--------FDNY-PDTITVDNKTYDVTLWDTAGQEDY   84 (205)
Q Consensus        22 ~~~ki~v~G~~~~GKstli~~~~~--------~~~~~~~~~t~--------~~~~-~~~~~~~~~~~~~~i~D~~g~~~~   84 (205)
                      +--+|.++..-.+||||.-.++..        +.......-|.        +... +-.+.++.+...+.++|+||+-.|
T Consensus        36 kirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf  115 (753)
T KOG0464|consen   36 KIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDF  115 (753)
T ss_pred             hhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceE
Confidence            445789999999999999877652        12211111111        1111 223456677788999999999999


Q ss_pred             ccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCc
Q psy15714         85 ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSEN  143 (205)
Q Consensus        85 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~  143 (205)
                      +.-..+.++-.|++|.|||.+..-..+.+. .|... .+  .++|-..++||+|....+
T Consensus       116 ~leverclrvldgavav~dasagve~qtlt-vwrqa-dk--~~ip~~~finkmdk~~an  170 (753)
T KOG0464|consen  116 RLEVERCLRVLDGAVAVFDASAGVEAQTLT-VWRQA-DK--FKIPAHCFINKMDKLAAN  170 (753)
T ss_pred             EEEHHHHHHHhcCeEEEEeccCCcccceee-eehhc-cc--cCCchhhhhhhhhhhhhh
Confidence            988888999999999999998776666664 56332 23  389999999999987654

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=98.13  E-value=3e-06  Score=59.15  Aligned_cols=24  Identities=21%  Similarity=0.253  Sum_probs=21.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCC
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTENK   47 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~~   47 (205)
                      -.++++|+.|||||||+|.+.+..
T Consensus        36 k~~vl~G~SGvGKSSLiN~L~~~~   59 (161)
T PF03193_consen   36 KTSVLLGQSGVGKSSLINALLPEA   59 (161)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhc
Confidence            468999999999999999999863

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.11  E-value=9.1e-06  Score=63.36  Aligned_cols=95  Identities=15%  Similarity=0.106  Sum_probs=53.5

Q ss_pred             EEEEEEEEcCCCcccccc--------c----ccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCc
Q psy15714         70 TYDVTLWDTAGQEDYERL--------R----PMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKA  137 (205)
Q Consensus        70 ~~~~~i~D~~g~~~~~~~--------~----~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~  137 (205)
                      .+.+.|+||||.......        .    ...-...+..++|.|++...  ..+. . ...+...  --+.-+|+||.
T Consensus       196 ~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~-~-a~~f~~~--~~~~giIlTKl  269 (318)
T PRK10416        196 GIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NALS-Q-AKAFHEA--VGLTGIILTKL  269 (318)
T ss_pred             CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHHH-H-HHHHHhh--CCCCEEEEECC
Confidence            467899999996542211        1    11123467789999988543  2222 1 1112111  13457999999


Q ss_pred             ccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCCCCCHHHHH
Q psy15714        138 DLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVF  189 (205)
Q Consensus       138 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  189 (205)
                      |.....                -.+...+...+.+ +..++  +|++++++-
T Consensus       270 D~t~~~----------------G~~l~~~~~~~~P-i~~v~--~Gq~~~Dl~  302 (318)
T PRK10416        270 DGTAKG----------------GVVFAIADELGIP-IKFIG--VGEGIDDLQ  302 (318)
T ss_pred             CCCCCc----------------cHHHHHHHHHCCC-EEEEe--CCCChhhCc
Confidence            954321                1344445555666 66666  777787664

>PRK14974 cell division protein FtsY; Provisional

Probab=98.11  E-value=9.5e-06  Score=63.56  Aligned_cols=96  Identities=17%  Similarity=0.084  Sum_probs=53.5

Q ss_pred             EEEEEEEcCCCcccccc----ccc--CcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCch
Q psy15714         71 YDVTLWDTAGQEDYERL----RPM--SYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENK  144 (205)
Q Consensus        71 ~~~~i~D~~g~~~~~~~----~~~--~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~  144 (205)
                      +.+.|+||+|.......    ...  ..-..+.+++|.|++......+    ....+...  --+--+++||.|..... 
T Consensus       223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~----~a~~f~~~--~~~~giIlTKlD~~~~~-  295 (336)
T PRK14974        223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVE----QAREFNEA--VGIDGVILTKVDADAKG-  295 (336)
T ss_pred             CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHH----HHHHHHhc--CCCCEEEEeeecCCCCc-
Confidence            46899999997542211    011  1235788899999876432222    11222221  12357899999986532 


Q ss_pred             hhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCCCCCHHHHHHH
Q psy15714        145 TIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIA  191 (205)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  191 (205)
                                   .  .+...+...+.+ +..++  +|.+++++..+
T Consensus       296 -------------G--~~ls~~~~~~~P-i~~i~--~Gq~v~Dl~~~  324 (336)
T PRK14974        296 -------------G--AALSIAYVIGKP-ILFLG--VGQGYDDLIPF  324 (336)
T ss_pred             -------------c--HHHHHHHHHCcC-EEEEe--CCCChhhcccC
Confidence                         1  233333444555 55555  78888776543

>PRK12288 GTPase RsgA; Reviewed

Probab=98.11  E-value=6.7e-06  Score=64.81  Aligned_cols=22  Identities=27%  Similarity=0.308  Sum_probs=20.3

Q ss_pred             EEEECCCCCCHHHHHHHHhcCC
Q psy15714         26 VTTVGDGMVGKTCLLITHTENK   47 (205)
Q Consensus        26 i~v~G~~~~GKstli~~~~~~~   47 (205)
                      ++++|.+|+|||||||+|.+..
T Consensus       208 ~~~vG~sgVGKSTLiN~Ll~~~  229 (347)
T PRK12288        208 SIFVGQSGVGKSSLINALLPEA  229 (347)
T ss_pred             EEEECCCCCCHHHHHHHhcccc
Confidence            7899999999999999999764

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=98.07  E-value=2.1e-05  Score=58.42  Aligned_cols=88  Identities=19%  Similarity=0.119  Sum_probs=51.2

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcC--CCCCC--CcCccccccceeEEE-CCEEEEEEEEEcCCCcccccc------cc
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTEN--KFPTD--YVPTVFDNYPDTITV-DNKTYDVTLWDTAGQEDYERL------RP   89 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~--~~~~~--~~~t~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~------~~   89 (205)
                      ....-|.|+|++++|||+|+|++++.  .|...  ..+++...+.-...+ .+....+.++||+|-......      ..
T Consensus         5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~   84 (224)
T cd01851           5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARL   84 (224)
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHH
Confidence            34567899999999999999999998  55322  112221111111111 123467999999996543221      11


Q ss_pred             cCcCC--CcEEEEEEECCCcc
Q psy15714         90 MSYPN--TDCFLLCFSIGSTS  108 (205)
Q Consensus        90 ~~~~~--~~~~i~v~d~~~~~  108 (205)
                      ..+..  ++.+||..+.....
T Consensus        85 ~~l~~llss~~i~n~~~~~~~  105 (224)
T cd01851          85 FALATLLSSVLIYNSWETILG  105 (224)
T ss_pred             HHHHHHHhCEEEEeccCcccH
Confidence            12223  77777777655443

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1)

Probab=98.06  E-value=2.1e-05  Score=44.46  Aligned_cols=45  Identities=29%  Similarity=0.407  Sum_probs=31.9

Q ss_pred             CCCcEEEEEEECCCcc--hHHHHHHHHHHHHhhhCCCCCEEEEeeCcc
Q psy15714         93 PNTDCFLLCFSIGSTS--SYENILSKWYPELKHHCPKVPIILVGTKAD  138 (205)
Q Consensus        93 ~~~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D  138 (205)
                      .-.++++|++|++...  ++++.. .+...++..+.+.|+++|.||+|
T Consensus        12 hL~~~ilfi~D~Se~CGysie~Q~-~L~~~ik~~F~~~P~i~V~nK~D   58 (58)
T PF06858_consen   12 HLADAILFIIDPSEQCGYSIEEQL-SLFKEIKPLFPNKPVIVVLNKID   58 (58)
T ss_dssp             GT-SEEEEEE-TT-TTSS-HHHHH-HHHHHHHHHTTTS-EEEEE--TT
T ss_pred             hhcceEEEEEcCCCCCCCCHHHHH-HHHHHHHHHcCCCCEEEEEeccC
Confidence            4578999999999764  566655 78888988889999999999998

The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.

>PRK12289 GTPase RsgA; Reviewed

Probab=98.06  E-value=8.4e-06  Score=64.33  Aligned_cols=23  Identities=22%  Similarity=0.247  Sum_probs=20.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENK   47 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~   47 (205)
                      .++|+|.+|+|||||||++.+..
T Consensus       174 i~v~iG~SgVGKSSLIN~L~~~~  196 (352)
T PRK12289        174 ITVVAGPSGVGKSSLINRLIPDV  196 (352)
T ss_pred             eEEEEeCCCCCHHHHHHHHcCcc
Confidence            37999999999999999999754

>KOG0466|consensus

Probab=98.04  E-value=5.7e-06  Score=62.72  Aligned_cols=111  Identities=21%  Similarity=0.176  Sum_probs=69.2

Q ss_pred             EEEEEEcCCCcccccccccCcCCCcEEEEEEECCCc----chHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhh
Q psy15714         72 DVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGST----SSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTID  147 (205)
Q Consensus        72 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~  147 (205)
                      .+.+.|+|||+-.-...-.-..-.|++++++..+..    ++-+.+.  -..++.    =..++++-||+||....... 
T Consensus       126 HVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLa--aveiM~----LkhiiilQNKiDli~e~~A~-  198 (466)
T KOG0466|consen  126 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLA--AVEIMK----LKHIIILQNKIDLIKESQAL-  198 (466)
T ss_pred             EEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHH--HHHHhh----hceEEEEechhhhhhHHHHH-
Confidence            356779999987554433334446777777765532    3333332  122221    35689999999998764221 


Q ss_pred             hhhhhccccccHHHHHHHHHHc--CCceEEEcccCCCCCHHHHHHHHHHHHHh
Q psy15714        148 KKKAAEVDLVSTSQGKKMRRKI--KAAEYLECSAKLNEGLDQVFIAAVRSAVK  198 (205)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  198 (205)
                               --.++.+.|...-  ...|++++||.-++||+-+.++|+..+--
T Consensus       199 ---------eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPv  242 (466)
T KOG0466|consen  199 ---------EQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPV  242 (466)
T ss_pred             ---------HHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCC
Confidence                     1122334444332  23459999999999999999999987643

>KOG0467|consensus

Probab=98.02  E-value=2e-05  Score=66.36  Aligned_cols=114  Identities=19%  Similarity=0.161  Sum_probs=75.1

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcC--CCCCCCcC------ccccccc-------eeEEECCEEEEEEEEEcCCCcccc
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTEN--KFPTDYVP------TVFDNYP-------DTITVDNKTYDVTLWDTAGQEDYE   85 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~--~~~~~~~~------t~~~~~~-------~~~~~~~~~~~~~i~D~~g~~~~~   85 (205)
                      ..--+|+++..-.-|||||...+...  .+......      +..+...       ..+..--+.+.+.++|.|||-+|.
T Consensus         7 ~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~   86 (887)
T KOG0467|consen    7 EGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFS   86 (887)
T ss_pred             CceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchh
Confidence            34457899999999999999887742  22111111      1111111       122222245778999999999999


Q ss_pred             cccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhh-hCCCCCEEEEeeCccc
Q psy15714         86 RLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKH-HCPKVPIILVGTKADL  139 (205)
Q Consensus        86 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl  139 (205)
                      +.......-+|++++++|+...-..+..     ..+++ .......++|+||+|.
T Consensus        87 sevssas~l~d~alvlvdvvegv~~qt~-----~vlrq~~~~~~~~~lvinkidr  136 (887)
T KOG0467|consen   87 SEVSSASRLSDGALVLVDVVEGVCSQTY-----AVLRQAWIEGLKPILVINKIDR  136 (887)
T ss_pred             hhhhhhhhhcCCcEEEEeeccccchhHH-----HHHHHHHHccCceEEEEehhhh
Confidence            9888888999999999999866433332     11221 1247788999999993

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=98.02  E-value=1.3e-05  Score=60.34  Aligned_cols=24  Identities=21%  Similarity=0.185  Sum_probs=21.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCC
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTENK   47 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~~   47 (205)
                      -.++++|.+|+|||||+|++.+..
T Consensus       121 ~~~~~~G~sgvGKStLiN~L~~~~  144 (245)
T TIGR00157       121 RISVFAGQSGVGKSSLINALDPSV  144 (245)
T ss_pred             CEEEEECCCCCCHHHHHHHHhhhh
Confidence            368999999999999999999754

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=98.02  E-value=2.3e-05  Score=59.83  Aligned_cols=96  Identities=17%  Similarity=0.081  Sum_probs=55.0

Q ss_pred             EEEEEEEEcCCCccccccc------------ccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCc
Q psy15714         70 TYDVTLWDTAGQEDYERLR------------PMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKA  137 (205)
Q Consensus        70 ~~~~~i~D~~g~~~~~~~~------------~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~  137 (205)
                      .+.+.|+|+||........            ...-...+.+++|.|++...  +.+.  ....+.+..  -+--+|+||.
T Consensus       154 ~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~--~~~~--~~~~f~~~~--~~~g~IlTKl  227 (272)
T TIGR00064       154 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQ--NALE--QAKVFNEAV--GLTGIILTKL  227 (272)
T ss_pred             CCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCH--HHHH--HHHHHHhhC--CCCEEEEEcc
Confidence            3678999999975432221            11223488999999997532  2221  222232221  2457999999


Q ss_pred             ccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCCCCCHHHHHH
Q psy15714        138 DLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFI  190 (205)
Q Consensus       138 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  190 (205)
                      |.....                -.+..+....+.+ +..++  +|++++++-.
T Consensus       228 De~~~~----------------G~~l~~~~~~~~P-i~~~~--~Gq~~~dl~~  261 (272)
T TIGR00064       228 DGTAKG----------------GIILSIAYELKLP-IKFIG--VGEKIDDLAP  261 (272)
T ss_pred             CCCCCc----------------cHHHHHHHHHCcC-EEEEe--CCCChHhCcc
Confidence            975532                1233444455555 55555  7777776643

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.01  E-value=8.1e-05  Score=56.86  Aligned_cols=94  Identities=18%  Similarity=0.168  Sum_probs=66.7

Q ss_pred             cccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHH
Q psy15714         86 RLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKM  165 (205)
Q Consensus        86 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (205)
                      .+.+....+.|-+++++.+.+++--..+...++-..+..  ++.-+|++||+||.+...            .-.++....
T Consensus        71 ~L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~--gi~pvIvlnK~DL~~~~~------------~~~~~~~~~  136 (301)
T COG1162          71 VLIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEAG--GIEPVIVLNKIDLLDDEE------------AAVKELLRE  136 (301)
T ss_pred             ceeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHHc--CCcEEEEEEccccCcchH------------HHHHHHHHH
Confidence            334445566788888888888764334443555555544  888899999999987642            111456667


Q ss_pred             HHHcCCceEEEcccCCCCCHHHHHHHHHH
Q psy15714        166 RRKIKAAEYLECSAKLNEGLDQVFIAAVR  194 (205)
Q Consensus       166 ~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~  194 (205)
                      ...++.. .+.+|++++++++++...+..
T Consensus       137 y~~~gy~-v~~~s~~~~~~~~~l~~~l~~  164 (301)
T COG1162         137 YEDIGYP-VLFVSAKNGDGLEELAELLAG  164 (301)
T ss_pred             HHhCCee-EEEecCcCcccHHHHHHHhcC
Confidence            7778888 999999999999999887654

>cd01854 YjeQ_engC YjeQ/EngC

Probab=97.97  E-value=1.5e-05  Score=61.51  Aligned_cols=25  Identities=24%  Similarity=0.191  Sum_probs=22.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCC
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTENKF   48 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~~~   48 (205)
                      -.++++|++|+|||||+|.+.+...
T Consensus       162 k~~~~~G~sg~GKSTlin~l~~~~~  186 (287)
T cd01854         162 KTSVLVGQSGVGKSTLINALLPDLD  186 (287)
T ss_pred             ceEEEECCCCCCHHHHHHHHhchhh
Confidence            4799999999999999999997643

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>PRK13695 putative NTPase; Provisional

Probab=97.97  E-value=0.00016  Score=51.56  Aligned_cols=22  Identities=36%  Similarity=0.517  Sum_probs=19.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHhc
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~   45 (205)
                      +||+++|.+|+|||||+..+.+
T Consensus         1 ~~i~ltG~~G~GKTTll~~i~~   22 (174)
T PRK13695          1 MKIGITGPPGVGKTTLVLKIAE   22 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999987543

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=97.89  E-value=2.6e-05  Score=62.03  Aligned_cols=112  Identities=16%  Similarity=0.083  Sum_probs=57.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCC----CCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccc--------c
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTENKFPT----DYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRP--------M   90 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~~~~~----~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~--------~   90 (205)
                      .++.++|.+|+|||||+|++.+.....    ...+..++.. ...+..++   .+.++||||-.....+..        .
T Consensus       155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~---~~~l~DtPG~~~~~~~~~~l~~~~l~~  231 (360)
T TIGR03597       155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDD---GHSLYDTPGIINSHQMAHYLDKKDLKY  231 (360)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCC---CCEEEECCCCCChhHhhhhcCHHHHhh
Confidence            489999999999999999999743211    1111111111 11233322   256899999543221110        1


Q ss_pred             C--cCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccC
Q psy15714         91 S--YPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSE  142 (205)
Q Consensus        91 ~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  142 (205)
                      .  -+......+..+...--.+..+  .+++.+..  ...++.+.+++.+....
T Consensus       232 ~~~~~~i~~~~~~l~~~q~~~~ggl--~~~d~~~~--~~~~~~~~~~~~~~~h~  281 (360)
T TIGR03597       232 ITPKKEIKPKTYQLNPNQTLFLGGL--ARFDYLKG--EKTSFTFYVSNELNIHR  281 (360)
T ss_pred             cCCCCccCceEEEeCCCCEEEEceE--EEEEEecC--CceEEEEEccCCceeEe
Confidence            1  1234555666554433333332  23332322  25567777777775543

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=97.86  E-value=9.5e-06  Score=58.08  Aligned_cols=68  Identities=21%  Similarity=0.174  Sum_probs=39.2

Q ss_pred             EEEEEEEEcCCCcccccc--ccc---CcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccC
Q psy15714         70 TYDVTLWDTAGQEDYERL--RPM---SYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSE  142 (205)
Q Consensus        70 ~~~~~i~D~~g~~~~~~~--~~~---~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  142 (205)
                      .....+..+.|...-..+  ...   ..-..+.+|.|+|+.+-.........+...+...     =+|++||+|+.+.
T Consensus        84 ~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~A-----DvIvlnK~D~~~~  156 (178)
T PF02492_consen   84 RPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAFA-----DVIVLNKIDLVSD  156 (178)
T ss_dssp             C-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT------SEEEEE-GGGHHH
T ss_pred             CcCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchhc-----CEEEEeccccCCh
Confidence            356677788775443333  000   0224688999999976543444443555555443     3899999998765

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.

>PRK00098 GTPase RsgA; Reviewed

Probab=97.85  E-value=3.3e-05  Score=59.87  Aligned_cols=24  Identities=25%  Similarity=0.248  Sum_probs=21.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCC
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTENK   47 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~~   47 (205)
                      -.++++|.+|+|||||+|++.+..
T Consensus       165 k~~~~~G~sgvGKStlin~l~~~~  188 (298)
T PRK00098        165 KVTVLAGQSGVGKSTLLNALAPDL  188 (298)
T ss_pred             ceEEEECCCCCCHHHHHHHHhCCc
Confidence            368999999999999999998754

>KOG4273|consensus

Probab=97.85  E-value=0.00044  Score=51.30  Aligned_cols=168  Identities=16%  Similarity=0.203  Sum_probs=94.8

Q ss_pred             eEEEEECCCCC--CHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEE--EEEEcCCCcccccccccCcCCCcEEE
Q psy15714         24 LKVTTVGDGMV--GKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDV--TLWDTAGQEDYERLRPMSYPNTDCFL   99 (205)
Q Consensus        24 ~ki~v~G~~~~--GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~--~i~D~~g~~~~~~~~~~~~~~~~~~i   99 (205)
                      ..++|+|..|+  ||.+|+.++....|.....+...+.+. --+++++-+.-  .+.=.+--+.+-...........++|
T Consensus         5 p~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~h-gwtid~kyysadi~lcishicde~~lpn~~~a~pl~a~v   83 (418)
T KOG4273|consen    5 PCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFH-GWTIDNKYYSADINLCISHICDEKFLPNAEIAEPLQAFV   83 (418)
T ss_pred             ceEEEecccccccchHHHHHHhcchhheeeccccCceeee-ceEecceeeecceeEEeecccchhccCCcccccceeeEE
Confidence            46799999998  999999999988876544443333321 12233332221  11111111222222223455667899


Q ss_pred             EEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhh-----hh-------------------------
Q psy15714        100 LCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTID-----KK-------------------------  149 (205)
Q Consensus       100 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~-----~~-------------------------  149 (205)
                      .|||.+....+..+. .|+.--.-...+ -.+-++||.|...+.-...     +.                         
T Consensus        84 mvfdlse~s~l~alq-dwl~htdinsfd-illcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgisetegss  161 (418)
T KOG4273|consen   84 MVFDLSEKSGLDALQ-DWLPHTDINSFD-ILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGISETEGSS  161 (418)
T ss_pred             EEEeccchhhhHHHH-hhccccccccch-hheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhcccccccccc
Confidence            999999888888876 786532222112 1357899999754321100     00                         


Q ss_pred             --hhhccccccHHHHHHHHHHcCCceEEEcccCC------------CCCHHHHHHHHHHH
Q psy15714        150 --KAAEVDLVSTSQGKKMRRKIKAAEYLECSAKL------------NEGLDQVFIAAVRS  195 (205)
Q Consensus       150 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~------------~~~i~~~~~~i~~~  195 (205)
                        ...+........+.+|+...++. +++.+|..            ..|++.+|..+...
T Consensus       162 llgsedasldirga~lewc~e~~~e-fieacasn~dfd~c~~~dgdsqgverifgal~ah  220 (418)
T KOG4273|consen  162 LLGSEDASLDIRGAALEWCLEHGFE-FIEACASNEDFDECDDDDGDSQGVERIFGALNAH  220 (418)
T ss_pred             ccccccchhhHHHHHHHHHHhcCce-eeeecCCccccchhhccCcchhhHHHHHHHhhhc
Confidence              00001112233467888888888 89988853            23678888776554

>PRK13796 GTPase YqeH; Provisional

Probab=97.85  E-value=2.9e-05  Score=61.85  Aligned_cols=23  Identities=30%  Similarity=0.304  Sum_probs=20.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~   46 (205)
                      -++.++|.+|+|||||+|++...
T Consensus       161 ~~v~vvG~~NvGKSTLiN~L~~~  183 (365)
T PRK13796        161 RDVYVVGVTNVGKSTLINRIIKE  183 (365)
T ss_pred             CeEEEEcCCCCcHHHHHHHHHhh
Confidence            47999999999999999999864

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=97.83  E-value=0.00012  Score=59.09  Aligned_cols=65  Identities=17%  Similarity=0.120  Sum_probs=37.7

Q ss_pred             EEEEEEEEcCCCcccccc-----cc-cCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccc
Q psy15714         70 TYDVTLWDTAGQEDYERL-----RP-MSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLR  140 (205)
Q Consensus        70 ~~~~~i~D~~g~~~~~~~-----~~-~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  140 (205)
                      .+.+.|+||+|.......     .. ......+-+++|.|++......+.    ...+.+.  --+--+|+||.|..
T Consensus       182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~----a~~F~~~--~~~~g~IlTKlD~~  252 (429)
T TIGR01425       182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQ----AKAFKDS--VDVGSVIITKLDGH  252 (429)
T ss_pred             CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHH----HHHHHhc--cCCcEEEEECccCC
Confidence            467899999996543211     11 112356789999998755433222    2222222  23557888888864

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

Probab=97.83  E-value=0.0001  Score=54.11  Aligned_cols=63  Identities=21%  Similarity=0.208  Sum_probs=39.0

Q ss_pred             EEEEEEEc-CCCcccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCC-CCEEEEeeCcccc
Q psy15714         71 YDVTLWDT-AGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPK-VPIILVGTKADLR  140 (205)
Q Consensus        71 ~~~~i~D~-~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~-~p~ivv~nK~Dl~  140 (205)
                      ..+.|.|+ +|-+-|   -+...+++|.+|.|.|.+-. ++..+. .........  . .++.+|+||.|-.
T Consensus       134 ~e~VivDtEAGiEHf---gRg~~~~vD~vivVvDpS~~-sl~tae-ri~~L~~el--g~k~i~~V~NKv~e~  198 (255)
T COG3640         134 YEVVIVDTEAGIEHF---GRGTIEGVDLVIVVVDPSYK-SLRTAE-RIKELAEEL--GIKRIFVVLNKVDEE  198 (255)
T ss_pred             CcEEEEecccchhhh---ccccccCCCEEEEEeCCcHH-HHHHHH-HHHHHHHHh--CCceEEEEEeeccch
Confidence            34555555 333322   24567899999999998743 444432 233333333  4 8899999999954

>COG0523 Putative GTPases (G3E family) [General function prediction only]

Probab=97.77  E-value=0.00042  Score=54.12  Aligned_cols=45  Identities=16%  Similarity=0.043  Sum_probs=29.8

Q ss_pred             CCcEEEEEEECCCcchHHH-HHHHHHHHHhhhCCCCCEEEEeeCcccccCc
Q psy15714         94 NTDCFLLCFSIGSTSSYEN-ILSKWYPELKHHCPKVPIILVGTKADLRSEN  143 (205)
Q Consensus        94 ~~~~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~  143 (205)
                      ..|++|-|+|+.+-..... ..+...+.+...     =+|++||.|+.+..
T Consensus       116 ~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~A-----D~ivlNK~Dlv~~~  161 (323)
T COG0523         116 RLDGVVTVVDAAHFLEGLDAIAELAEDQLAFA-----DVIVLNKTDLVDAE  161 (323)
T ss_pred             eeceEEEEEeHHHhhhhHHHHHHHHHHHHHhC-----cEEEEecccCCCHH
Confidence            3688999999876544333 333444555433     38999999998763

>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.74  E-value=0.00027  Score=63.35  Aligned_cols=112  Identities=21%  Similarity=0.203  Sum_probs=59.7

Q ss_pred             EEEECCCCCCHHHHHHHHhcCCCC--CCC--cCccccc-cceeEEECCEEEEEEEEEcCCCcc--------cccccc---
Q psy15714         26 VTTVGDGMVGKTCLLITHTENKFP--TDY--VPTVFDN-YPDTITVDNKTYDVTLWDTAGQED--------YERLRP---   89 (205)
Q Consensus        26 i~v~G~~~~GKstli~~~~~~~~~--~~~--~~t~~~~-~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~---   89 (205)
                      .+|+|++|+||||++.. .+-.|+  ...  ....... ..-.-.+.+   .-.++||+|...        -+..|.   
T Consensus       128 y~viG~pgsGKTtal~~-sgl~Fpl~~~~~~~~~~~~gT~~cdwwf~d---eaVlIDtaGry~~q~s~~~~~~~~W~~fL  203 (1188)
T COG3523         128 YMVIGPPGSGKTTALLN-SGLQFPLAEQMGALGLAGPGTRNCDWWFTD---EAVLIDTAGRYITQDSADEVDRAEWLGFL  203 (1188)
T ss_pred             eEEecCCCCCcchHHhc-ccccCcchhhhccccccCCCCcccCccccc---ceEEEcCCcceecccCcchhhHHHHHHHH
Confidence            58999999999999842 112221  100  0000110 001111222   356779888321        111122   


Q ss_pred             ------cCcCCCcEEEEEEECCCcch----H-----HHHHHHHHHHHhh-hCCCCCEEEEeeCcccccC
Q psy15714         90 ------MSYPNTDCFLLCFSIGSTSS----Y-----ENILSKWYPELKH-HCPKVPIILVGTKADLRSE  142 (205)
Q Consensus        90 ------~~~~~~~~~i~v~d~~~~~s----~-----~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~  142 (205)
                            +..+..|+||+..|+.+--+    .     ..+. .-+..+.. ..-..|+.|++||.|+...
T Consensus       204 ~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR-~RL~El~~tL~~~~PVYl~lTk~Dll~G  271 (1188)
T COG3523         204 GLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLR-ARLQELRETLHARLPVYLVLTKADLLPG  271 (1188)
T ss_pred             HHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHH-HHHHHHHHhhccCCceEEEEeccccccc
Confidence                  34677999999999875311    1     1122 11233333 2268999999999999764

>cd03114 ArgK-like The function of this protein family is unkown

Probab=97.71  E-value=0.00015  Score=50.26  Aligned_cols=58  Identities=24%  Similarity=0.275  Sum_probs=35.5

Q ss_pred             EEEEEEEEcCCCcccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcc
Q psy15714         70 TYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKAD  138 (205)
Q Consensus        70 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D  138 (205)
                      .+.+.|.|++|.....   ..++..+|.++++...+--+.+.-.  ++ ..+     ..-=+++.||.|
T Consensus        91 ~~D~iiIDtaG~~~~~---~~~~~~Ad~~ivv~tpe~~D~y~~~--k~-~~~-----~~~~~~~~~k~~  148 (148)
T cd03114          91 GFDVIIVETVGVGQSE---VDIASMADTTVVVMAPGAGDDIQAI--KA-GIM-----EIADIVVVNKAD  148 (148)
T ss_pred             CCCEEEEECCccChhh---hhHHHhCCEEEEEECCCchhHHHHh--hh-hHh-----hhcCEEEEeCCC
Confidence            4678899999865322   2478899999998876521111111  11 222     223478899987

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>PRK11537 putative GTP-binding protein YjiA; Provisional

Probab=97.71  E-value=0.00043  Score=54.14  Aligned_cols=21  Identities=29%  Similarity=0.115  Sum_probs=18.6

Q ss_pred             EEEECCCCCCHHHHHHHHhcC
Q psy15714         26 VTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        26 i~v~G~~~~GKstli~~~~~~   46 (205)
                      .+|.|.-|+|||||++++...
T Consensus         7 ~iltGFLGaGKTTll~~ll~~   27 (318)
T PRK11537          7 TLLTGFLGAGKTTLLRHILNE   27 (318)
T ss_pred             EEEEECCCCCHHHHHHHHHhc
Confidence            578899999999999998854

>COG1162 Predicted GTPases [General function prediction only]

Probab=97.70  E-value=8.2e-05  Score=56.84  Aligned_cols=22  Identities=23%  Similarity=0.286  Sum_probs=20.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~   46 (205)
                      ..+++|.+|+|||||+|++...
T Consensus       166 ~svl~GqSGVGKSSLiN~L~p~  187 (301)
T COG1162         166 ITVLLGQSGVGKSTLINALLPE  187 (301)
T ss_pred             eEEEECCCCCcHHHHHHhhCch
Confidence            6789999999999999999963

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.69  E-value=0.00047  Score=56.99  Aligned_cols=23  Identities=22%  Similarity=0.213  Sum_probs=19.1

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhc
Q psy15714         23 ALKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        23 ~~ki~v~G~~~~GKstli~~~~~   45 (205)
                      .-.|+|+|+.|+||||++.++..
T Consensus       350 G~vIaLVGPtGvGKTTtaakLAa  372 (559)
T PRK12727        350 GGVIALVGPTGAGKTTTIAKLAQ  372 (559)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            45789999999999999866653

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.65  E-value=0.00046  Score=54.91  Aligned_cols=23  Identities=22%  Similarity=0.108  Sum_probs=19.4

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhc
Q psy15714         23 ALKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        23 ~~ki~v~G~~~~GKstli~~~~~   45 (205)
                      .-.++++|++|+||||++.++..
T Consensus       137 g~ii~lvGptGvGKTTtiakLA~  159 (374)
T PRK14722        137 GGVFALMGPTGVGKTTTTAKLAA  159 (374)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            34788999999999999977754

>KOG1533|consensus

Probab=97.59  E-value=0.00018  Score=52.81  Aligned_cols=120  Identities=13%  Similarity=0.079  Sum_probs=61.3

Q ss_pred             EEEEEEEEcCCCccccccc------ccCcCCCcEEEEEEEC------CCcchHHHHHHHHHHHHhhh-CCCCCEEEEeeC
Q psy15714         70 TYDVTLWDTAGQEDYERLR------PMSYPNTDCFLLCFSI------GSTSSYENILSKWYPELKHH-CPKVPIILVGTK  136 (205)
Q Consensus        70 ~~~~~i~D~~g~~~~~~~~------~~~~~~~~~~i~v~d~------~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK  136 (205)
                      +..+.++|+|||-++-...      -..++..+.-+.++..      +++..+...   ++..+... .-..|=|=|+.|
T Consensus        96 ~~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~---lL~sl~tMl~melphVNvlSK  172 (290)
T KOG1533|consen   96 TDHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISS---LLVSLATMLHMELPHVNVLSK  172 (290)
T ss_pred             cCcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHH---HHHHHHHHHhhcccchhhhhH
Confidence            4568899999975532111      1123334444444332      455655553   22222222 237888999999


Q ss_pred             cccccCchh----------hhhhh----------hhccccccHHHHHHHHHHcCCceEEEcccCCCCCHHHHHHHH
Q psy15714        137 ADLRSENKT----------IDKKK----------AAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAA  192 (205)
Q Consensus       137 ~Dl~~~~~~----------~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i  192 (205)
                      +|+......          .+...          ..+.+.--.++...+....+...+...+..+.+++-.+...|
T Consensus       173 ~Dl~~~ygkl~f~ld~yt~v~Dl~yL~~~ld~dp~~~kYrkLne~ic~~IeD~~LVSF~~L~v~nkeSml~l~~~I  248 (290)
T KOG1533|consen  173 ADLLKKYGKLPFNLDFYTEVQDLSYLEDLLDVDPRLRKYRKLNEAICELIEDFNLVSFEVLDVDNKESMLRLQQTI  248 (290)
T ss_pred             hHHHHhhcccccccchhhhhhhHHHHHHHhccChhhhHHHHHHHHHHHHHhccCceeeEEeeccCHHHHHHHHHHH
Confidence            998644320          00000          000001123345566667777766666666666666665444

>KOG0459|consensus

Probab=97.59  E-value=6e-05  Score=59.32  Aligned_cols=167  Identities=12%  Similarity=0.070  Sum_probs=96.0

Q ss_pred             ccccceeeEEEEECCCCCCHHHHHHHHhc--CCCCC---------------------CCcCcc-cccc-ceeEE-----E
Q psy15714         17 SKSVHKALKVTTVGDGMVGKTCLLITHTE--NKFPT---------------------DYVPTV-FDNY-PDTIT-----V   66 (205)
Q Consensus        17 ~~~~~~~~ki~v~G~~~~GKstli~~~~~--~~~~~---------------------~~~~t~-~~~~-~~~~~-----~   66 (205)
                      ...+...++++++|.-.+||||+-..+..  +....                     -+..+. ..+. .+.+.     +
T Consensus        73 ~~~pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~F  152 (501)
T KOG0459|consen   73 GEYPKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYF  152 (501)
T ss_pred             cCCCCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEE
Confidence            34567789999999999999998543331  00000                     000111 1111 11221     1


Q ss_pred             CCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEEECCCcc---hHHHH-HHHHHHHHhhhCCCCCEEEEeeCcccccC
Q psy15714         67 DNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTS---SYENI-LSKWYPELKHHCPKVPIILVGTKADLRSE  142 (205)
Q Consensus        67 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  142 (205)
                      .-..-.++|.|.|||..|......-..++|+.++|+++--.+   .|+.= ...=..++.+...-...|+++||+|-+.-
T Consensus       153 Ete~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtv  232 (501)
T KOG0459|consen  153 ETENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTV  232 (501)
T ss_pred             EecceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCcc
Confidence            123346899999999999988888889999999999863221   11110 00111223333345678999999998766


Q ss_pred             chhhhhhhhhccccccHHHHHHHHHHcCC-----ceEEEcccCCCCCHHHHH
Q psy15714        143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKA-----AEYLECSAKLNEGLDQVF  189 (205)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~~  189 (205)
                      ++..+.-+      -..+....+.+.++.     ..++++|..+|.++.+.-
T Consensus       233 nWs~eRy~------E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~  278 (501)
T KOG0459|consen  233 NWSNERYE------ECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRT  278 (501)
T ss_pred             CcchhhHH------HHHHHHHHHHHHhcccCCCCceeeecccccccchhhcc
Confidence            54332211      112233344443322     348999999999987643

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=97.54  E-value=7.5e-05  Score=49.72  Aligned_cols=22  Identities=23%  Similarity=0.199  Sum_probs=19.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~   46 (205)
                      +|+|.|++||||||+.+.+...
T Consensus         1 vI~I~G~~gsGKST~a~~La~~   22 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAER   22 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999888764

...

>PRK08118 topology modulation protein; Reviewed

Probab=97.54  E-value=8e-05  Score=52.73  Aligned_cols=22  Identities=32%  Similarity=0.445  Sum_probs=19.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~   46 (205)
                      ||+|+|++|+|||||.+.+...
T Consensus         3 rI~I~G~~GsGKSTlak~L~~~   24 (167)
T PRK08118          3 KIILIGSGGSGKSTLARQLGEK   24 (167)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            8999999999999999887754

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=97.52  E-value=7.9e-05  Score=53.25  Aligned_cols=23  Identities=17%  Similarity=0.316  Sum_probs=21.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~   46 (205)
                      .||+|+|+|||||||+.+++...
T Consensus         1 ~riiilG~pGaGK~T~A~~La~~   23 (178)
T COG0563           1 MRILILGPPGAGKSTLAKKLAKK   23 (178)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            48999999999999999988876

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=97.52  E-value=0.00013  Score=51.86  Aligned_cols=67  Identities=18%  Similarity=0.118  Sum_probs=38.4

Q ss_pred             EEEEEEEEcCCCcccccc----cccC--cCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccC
Q psy15714         70 TYDVTLWDTAGQEDYERL----RPMS--YPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSE  142 (205)
Q Consensus        70 ~~~~~i~D~~g~~~~~~~----~~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  142 (205)
                      .+.+.|.|++|...+...    ...+  ....+.+++|+|......   .. .+...+.+.. + ..-+|.||.|....
T Consensus        82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~---~~-~~~~~~~~~~-~-~~~viltk~D~~~~  154 (173)
T cd03115          82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD---AV-NQAKAFNEAL-G-ITGVILTKLDGDAR  154 (173)
T ss_pred             CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH---HH-HHHHHHHhhC-C-CCEEEEECCcCCCC
Confidence            355788999997432111    1111  234899999999865433   22 2333333222 2 35678899997654

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>KOG2484|consensus

Probab=97.47  E-value=0.00016  Score=56.89  Aligned_cols=59  Identities=17%  Similarity=0.215  Sum_probs=40.8

Q ss_pred             ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccc-cceeEEECCEEEEEEEEEcCCC
Q psy15714         19 SVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDN-YPDTITVDNKTYDVTLWDTAGQ   81 (205)
Q Consensus        19 ~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~D~~g~   81 (205)
                      .-.+.+++.|+|-|++||||+||++...+.... -++.+.. ....+..+.   .+.|.|.||-
T Consensus       248 ~lk~sIrvGViG~PNVGKSSvINsL~~~k~C~v-g~~pGvT~smqeV~Ldk---~i~llDsPgi  307 (435)
T KOG2484|consen  248 ELKTSIRVGIIGYPNVGKSSVINSLKRRKACNV-GNVPGVTRSMQEVKLDK---KIRLLDSPGI  307 (435)
T ss_pred             ccCcceEeeeecCCCCChhHHHHHHHHhccccC-CCCccchhhhhheeccC---CceeccCCce
Confidence            457889999999999999999999999887432 2222222 223333332   5778899994

>KOG0099|consensus

Probab=97.47  E-value=0.0004  Score=51.87  Aligned_cols=129  Identities=15%  Similarity=0.144  Sum_probs=76.0

Q ss_pred             EEEEEEEEcCCCcccccccccCcCCCcEEEEEEECCCcc-------hHHHHHHHHHHHHhhhC-----CCCCEEEEeeCc
Q psy15714         70 TYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTS-------SYENILSKWYPELKHHC-----PKVPIILVGTKA  137 (205)
Q Consensus        70 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-------s~~~~~~~~~~~~~~~~-----~~~p~ivv~nK~  137 (205)
                      .++|+.+|.+|+..-+..|.+.+.+.-++|||...++..       +-..+. +-+..++..-     .-+.+|+++||.
T Consensus       201 kv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~-EaL~LFksiWnNRwL~tisvIlFLNKq  279 (379)
T KOG0099|consen  201 KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQ-EALNLFKSIWNNRWLRTISVILFLNKQ  279 (379)
T ss_pred             ccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHH-HHHHHHHHHHhhhHHhhhheeEEecHH
Confidence            356889999999999999999999999999999877421       111111 2222222211     358899999999


Q ss_pred             ccccCchhhhhh--------------------hhhc------cccccHHHHHHHHHHc----CCceEEEcccCCCCCHHH
Q psy15714        138 DLRSENKTIDKK--------------------KAAE------VDLVSTSQGKKMRRKI----KAAEYLECSAKLNEGLDQ  187 (205)
Q Consensus       138 Dl~~~~~~~~~~--------------------~~~~------~~~~~~~~~~~~~~~~----~~~~~~~~Sa~~~~~i~~  187 (205)
                      |+..........                    +...      .+....++........    ..+.+..+.|.+-++|..
T Consensus       280 DllaeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHFTcAvDTenIrr  359 (379)
T KOG0099|consen  280 DLLAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRR  359 (379)
T ss_pred             HHHHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceecccceeEeechHHHHH
Confidence            985432211100                    0000      0001111111111111    112245688999999999


Q ss_pred             HHHHHHHHHHhh
Q psy15714        188 VFIAAVRSAVKK  199 (205)
Q Consensus       188 ~~~~i~~~~~~~  199 (205)
                      +|......+...
T Consensus       360 VFnDcrdiIqr~  371 (379)
T KOG0099|consen  360 VFNDCRDIIQRM  371 (379)
T ss_pred             HHHHHHHHHHHH
Confidence            999887776553

>PRK07261 topology modulation protein; Provisional

Probab=97.45  E-value=0.00012  Score=52.09  Aligned_cols=22  Identities=23%  Similarity=0.373  Sum_probs=19.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHhc
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~   45 (205)
                      .||+|+|++|+|||||.+.+..
T Consensus         1 ~ri~i~G~~GsGKSTla~~l~~   22 (171)
T PRK07261          1 MKIAIIGYSGSGKSTLARKLSQ   22 (171)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            3799999999999999988764

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=97.45  E-value=0.00052  Score=47.02  Aligned_cols=65  Identities=14%  Similarity=0.109  Sum_probs=44.7

Q ss_pred             EEEEEEEcCCCcccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCccc
Q psy15714         71 YDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADL  139 (205)
Q Consensus        71 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl  139 (205)
                      +.+.|+|+|+...  ......+..+|.++++.+.+ ..++.... ..+..+.......++.+|.|+.+.
T Consensus        45 yd~VIiD~p~~~~--~~~~~~l~~aD~vviv~~~~-~~s~~~~~-~~l~~l~~~~~~~~~~lVvN~~~~  109 (139)
T cd02038          45 YDYIIIDTGAGIS--DNVLDFFLAADEVIVVTTPE-PTSITDAY-ALIKKLAKQLRVLNFRVVVNRAES  109 (139)
T ss_pred             CCEEEEECCCCCC--HHHHHHHHhCCeEEEEcCCC-hhHHHHHH-HHHHHHHHhcCCCCEEEEEeCCCC
Confidence            6789999987543  22345788999999999865 44555544 344555444446788899999874

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=97.44  E-value=0.00016  Score=41.97  Aligned_cols=21  Identities=24%  Similarity=0.185  Sum_probs=18.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q psy15714         25 KVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~   45 (205)
                      -.+|.|+.|+|||||+.++.-
T Consensus        25 ~tli~G~nGsGKSTllDAi~~   45 (62)
T PF13555_consen   25 VTLITGPNGSGKSTLLDAIQT   45 (62)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999987664

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.44  E-value=0.00096  Score=53.92  Aligned_cols=23  Identities=22%  Similarity=0.112  Sum_probs=19.7

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhc
Q psy15714         23 ALKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        23 ~~ki~v~G~~~~GKstli~~~~~   45 (205)
                      .-+++++|+.|+||||++..+.+
T Consensus       191 g~vi~lvGpnG~GKTTtlakLA~  213 (420)
T PRK14721        191 GGVYALIGPTGVGKTTTTAKLAA  213 (420)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            34899999999999999986654

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=97.44  E-value=0.00063  Score=48.39  Aligned_cols=45  Identities=16%  Similarity=0.119  Sum_probs=29.8

Q ss_pred             cEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccC
Q psy15714         96 DCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSE  142 (205)
Q Consensus        96 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  142 (205)
                      |++++|+|+.++.+-.+  ..+...+.-...+.|+++|+||+|+.+.
T Consensus         1 DvVl~VvDar~p~~~~~--~~i~~~~~l~~~~kp~IlVlNK~DL~~~   45 (172)
T cd04178           1 DVILEVLDARDPLGCRC--PQVEEAVLQAGGNKKLVLVLNKIDLVPK   45 (172)
T ss_pred             CEEEEEEECCCCCCCCC--HHHHHHHHhccCCCCEEEEEehhhcCCH
Confidence            78999999987643322  1333432111137899999999999754

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>PRK14738 gmk guanylate kinase; Provisional

Probab=97.42  E-value=0.0003  Score=51.59  Aligned_cols=26  Identities=35%  Similarity=0.387  Sum_probs=21.7

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcC
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~   46 (205)
                      .+..-|+|+|++|+|||||++++...
T Consensus        11 ~~~~~ivi~GpsG~GK~tl~~~L~~~   36 (206)
T PRK14738         11 AKPLLVVISGPSGVGKDAVLARMRER   36 (206)
T ss_pred             CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence            34467889999999999999998754

>TIGR00959 ffh signal recognition particle protein

Probab=97.42  E-value=0.00071  Score=54.90  Aligned_cols=66  Identities=21%  Similarity=0.157  Sum_probs=37.0

Q ss_pred             EEEEEEEEcCCCcccccc-cc-----cCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCccccc
Q psy15714         70 TYDVTLWDTAGQEDYERL-RP-----MSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS  141 (205)
Q Consensus        70 ~~~~~i~D~~g~~~~~~~-~~-----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  141 (205)
                      .+.+.|.||+|....... ..     ...-..+.+++|+|+....   +.. .+...+.... + ..-+|.||.|...
T Consensus       182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq---~~~-~~a~~f~~~v-~-i~giIlTKlD~~~  253 (428)
T TIGR00959       182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQ---DAV-NTAKTFNERL-G-LTGVVLTKLDGDA  253 (428)
T ss_pred             CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchH---HHH-HHHHHHHhhC-C-CCEEEEeCccCcc
Confidence            356899999995432211 00     0123477889999987543   332 2333333221 1 2358899999643

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>KOG1424|consensus

Probab=97.41  E-value=0.00026  Score=57.42  Aligned_cols=56  Identities=25%  Similarity=0.189  Sum_probs=39.5

Q ss_pred             eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccc-eeEEECCEEEEEEEEEcCCC
Q psy15714         22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYP-DTITVDNKTYDVTLWDTAGQ   81 (205)
Q Consensus        22 ~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~   81 (205)
                      ..+.|.++|-|++||||+||++.+.+... .+.|.+.... .++.+..   .+.+.|+||-
T Consensus       313 ~~vtVG~VGYPNVGKSSTINaLvG~KkVs-VS~TPGkTKHFQTi~ls~---~v~LCDCPGL  369 (562)
T KOG1424|consen  313 DVVTVGFVGYPNVGKSSTINALVGRKKVS-VSSTPGKTKHFQTIFLSP---SVCLCDCPGL  369 (562)
T ss_pred             ceeEEEeecCCCCchhHHHHHHhcCceee-eecCCCCcceeEEEEcCC---CceecCCCCc
Confidence            36999999999999999999999988643 2344444332 2333332   4678899993

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=97.40  E-value=0.00013  Score=50.02  Aligned_cols=20  Identities=20%  Similarity=0.205  Sum_probs=18.3

Q ss_pred             EEEECCCCCCHHHHHHHHhc
Q psy15714         26 VTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        26 i~v~G~~~~GKstli~~~~~   45 (205)
                      |+++|+||+|||||++.+..
T Consensus         2 ii~~G~pgsGKSt~a~~l~~   21 (143)
T PF13671_consen    2 IILCGPPGSGKSTLAKRLAK   21 (143)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            68999999999999998874

...

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=97.40  E-value=0.00016  Score=51.36  Aligned_cols=24  Identities=29%  Similarity=0.378  Sum_probs=21.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCC
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTENK   47 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~~   47 (205)
                      .-+++.||+|+|||||++++....
T Consensus         5 ~l~vlsgPSG~GKsTl~k~L~~~~   28 (191)
T COG0194           5 LLIVLSGPSGVGKSTLVKALLEDD   28 (191)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhc
Confidence            468999999999999999998776

>PRK14737 gmk guanylate kinase; Provisional

Probab=97.36  E-value=0.00035  Score=50.34  Aligned_cols=23  Identities=13%  Similarity=0.021  Sum_probs=20.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~   46 (205)
                      .=|+++|++|+|||||++++...
T Consensus         5 ~~ivl~GpsG~GK~tl~~~l~~~   27 (186)
T PRK14737          5 KLFIISSVAGGGKSTIIQALLEE   27 (186)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhc
Confidence            45899999999999999999864

>PRK10867 signal recognition particle protein; Provisional

Probab=97.35  E-value=0.00044  Score=56.16  Aligned_cols=65  Identities=22%  Similarity=0.189  Sum_probs=35.8

Q ss_pred             EEEEEEEEcCCCcccccc-cc-----cCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCC-EEEEeeCccccc
Q psy15714         70 TYDVTLWDTAGQEDYERL-RP-----MSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVP-IILVGTKADLRS  141 (205)
Q Consensus        70 ~~~~~i~D~~g~~~~~~~-~~-----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~  141 (205)
                      .+.+.|+||+|....... ..     ...-..+.+++|.|+....   ++. .....+..   .++ .-+|.||.|...
T Consensus       183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq---~av-~~a~~F~~---~~~i~giIlTKlD~~~  254 (433)
T PRK10867        183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQ---DAV-NTAKAFNE---ALGLTGVILTKLDGDA  254 (433)
T ss_pred             CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHH---HHH-HHHHHHHh---hCCCCEEEEeCccCcc
Confidence            367899999996432111 00     0112467789999976432   222 22233332   233 357889999643

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=97.35  E-value=0.0013  Score=41.43  Aligned_cols=69  Identities=20%  Similarity=0.204  Sum_probs=43.8

Q ss_pred             EEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccc-cccCcCCCcEEEEEEEC
Q psy15714         26 VTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERL-RPMSYPNTDCFLLCFSI  104 (205)
Q Consensus        26 i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-~~~~~~~~~~~i~v~d~  104 (205)
                      +++.|.+|+||||+...+...-....         .+...++    .+.+.|+++....... .......+|.++++.+.
T Consensus         2 ~~~~g~~G~Gktt~~~~l~~~l~~~g---------~~v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~   68 (99)
T cd01983           2 IVVTGKGGVGKTTLAANLAAALAKRG---------KRVLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTP   68 (99)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCC---------CeEEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCC
Confidence            67889999999999866554321111         1122223    6888899987543321 13466788999999876


Q ss_pred             CCc
Q psy15714        105 GST  107 (205)
Q Consensus       105 ~~~  107 (205)
                      ...
T Consensus        69 ~~~   71 (99)
T cd01983          69 EAL   71 (99)
T ss_pred             chh
Confidence            543

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>TIGR02475 CobW cobalamin biosynthesis protein CobW

Probab=97.34  E-value=0.0032  Score=49.84  Aligned_cols=21  Identities=29%  Similarity=0.191  Sum_probs=18.7

Q ss_pred             EEEECCCCCCHHHHHHHHhcC
Q psy15714         26 VTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        26 i~v~G~~~~GKstli~~~~~~   46 (205)
                      .+|.|.-|+|||||++++...
T Consensus         7 ~iltGFLGaGKTTll~~ll~~   27 (341)
T TIGR02475         7 TIVTGFLGAGKTTLIRHLLQN   27 (341)
T ss_pred             EEEEECCCCCHHHHHHHHHhc
Confidence            678899999999999998853

A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=97.33  E-value=0.0003  Score=57.21  Aligned_cols=23  Identities=26%  Similarity=0.161  Sum_probs=19.4

Q ss_pred             eeeEEEEECCCCCCHHHHHHHHh
Q psy15714         22 KALKVTTVGDGMVGKTCLLITHT   44 (205)
Q Consensus        22 ~~~ki~v~G~~~~GKstli~~~~   44 (205)
                      .+..|+++|++|+||||++..+.
T Consensus        94 ~p~vI~lvG~~GsGKTTtaakLA  116 (437)
T PRK00771         94 KPQTIMLVGLQGSGKTTTAAKLA  116 (437)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHH
Confidence            46789999999999999986554

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=97.32  E-value=0.0012  Score=44.87  Aligned_cols=25  Identities=24%  Similarity=0.209  Sum_probs=21.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCC
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTENKF   48 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~~~   48 (205)
                      -.+++.|++|+|||+|++.+...-.
T Consensus        20 ~~v~i~G~~G~GKT~l~~~i~~~~~   44 (151)
T cd00009          20 KNLLLYGPPGTGKTTLARAIANELF   44 (151)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhh
Confidence            4689999999999999988876543

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=97.30  E-value=0.00014  Score=51.15  Aligned_cols=22  Identities=23%  Similarity=0.371  Sum_probs=17.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~   46 (205)
                      ||+|+|.+++|||||++.|...
T Consensus         1 rI~i~G~~stGKTTL~~~L~~~   22 (163)
T PF13521_consen    1 RIVITGGPSTGKTTLIEALAAR   22 (163)
T ss_dssp             -EEEE--TTSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHc
Confidence            7999999999999999988865

>KOG2485|consensus

Probab=97.30  E-value=0.0003  Score=53.74  Aligned_cols=61  Identities=25%  Similarity=0.331  Sum_probs=36.9

Q ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCC------CcCccccccceeEEECCEEEEEEEEEcCCC
Q psy15714         20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTD------YVPTVFDNYPDTITVDNKTYDVTLWDTAGQ   81 (205)
Q Consensus        20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~------~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~   81 (205)
                      ....+.+.|+|-|++|||||+|++......-.      ..+.....+...+.+.... .+.+.|+||-
T Consensus       140 ~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp-~vy~iDTPGi  206 (335)
T KOG2485|consen  140 LNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRP-PVYLIDTPGI  206 (335)
T ss_pred             cCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCC-ceEEecCCCc
Confidence            34678999999999999999988775432111      1111111112223443333 3777899994

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.29  E-value=0.00031  Score=51.07  Aligned_cols=24  Identities=25%  Similarity=0.196  Sum_probs=21.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENKF   48 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~~   48 (205)
                      .++++|++|+|||||++.+..-+-
T Consensus        30 vv~iiGpSGSGKSTlLRclN~LE~   53 (240)
T COG1126          30 VVVIIGPSGSGKSTLLRCLNGLEE   53 (240)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCcC
Confidence            689999999999999998876553

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=97.28  E-value=0.00029  Score=42.09  Aligned_cols=21  Identities=19%  Similarity=0.289  Sum_probs=18.6

Q ss_pred             EEEECCCCCCHHHHHHHHhcC
Q psy15714         26 VTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        26 i~v~G~~~~GKstli~~~~~~   46 (205)
                      |++.|++|+||||+.+++...
T Consensus         2 i~i~G~~gsGKst~~~~l~~~   22 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLAEQ   22 (69)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            689999999999999887765

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=97.27  E-value=0.00049  Score=54.73  Aligned_cols=66  Identities=27%  Similarity=0.300  Sum_probs=36.6

Q ss_pred             EEEEEEEEEcCCCcccccc----cccCcC--CCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCE-EEEeeCccccc
Q psy15714         69 KTYDVTLWDTAGQEDYERL----RPMSYP--NTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPI-ILVGTKADLRS  141 (205)
Q Consensus        69 ~~~~~~i~D~~g~~~~~~~----~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-ivv~nK~Dl~~  141 (205)
                      ..+.+.+.||.|...+...    ...++.  ...-+.+|++++...  .++.    ..+.++. .+|+ -++.||.|...
T Consensus       280 ~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~--~dlk----ei~~~f~-~~~i~~~I~TKlDET~  352 (407)
T COG1419         280 RDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKY--EDLK----EIIKQFS-LFPIDGLIFTKLDETT  352 (407)
T ss_pred             hcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcch--HHHH----HHHHHhc-cCCcceeEEEcccccC
Confidence            3457889999997665432    111222  233455566766542  2333    3333333 3444 58899999754

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=97.25  E-value=0.00029  Score=49.92  Aligned_cols=52  Identities=23%  Similarity=0.279  Sum_probs=29.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEc
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDT   78 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~   78 (205)
                      ||++.|++|+|||||++++...--... .+ ..-.+...+.-++...-|.+.|+
T Consensus         1 ~i~iTG~pG~GKTTll~k~i~~l~~~~-~~-v~Gf~t~evr~~g~r~GF~iv~l   52 (168)
T PF03266_consen    1 HIFITGPPGVGKTTLLKKVIEELKKKG-LP-VGGFYTEEVRENGRRIGFDIVDL   52 (168)
T ss_dssp             EEEEES-TTSSHHHHHHHHHHHHHHTC-GG-EEEEEEEEEETTSSEEEEEEEET
T ss_pred             CEEEECcCCCCHHHHHHHHHHHhhccC-Cc-cceEEeecccCCCceEEEEEEEC
Confidence            689999999999999988774321110 11 12222333444555555666666

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>KOG0469|consensus

Probab=97.22  E-value=0.001  Score=54.11  Aligned_cols=112  Identities=19%  Similarity=0.208  Sum_probs=73.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC--CC------CCCcCccccccceeEEE-----------------------CCEEEEE
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENK--FP------TDYVPTVFDNYPDTITV-----------------------DNKTYDV   73 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~--~~------~~~~~t~~~~~~~~~~~-----------------------~~~~~~~   73 (205)
                      ++.|+....-|||||-..+....  +.      ..+..|..+.....+++                       ++..+-+
T Consensus        21 NmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~FLi  100 (842)
T KOG0469|consen   21 NMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNGFLI  100 (842)
T ss_pred             cceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCcceeE
Confidence            56788899999999987776421  11      11111112222222222                       2456789


Q ss_pred             EEEEcCCCcccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccc
Q psy15714         74 TLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLR  140 (205)
Q Consensus        74 ~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  140 (205)
                      .++|.|||-.|.+-....++-.|+.++|+|..+.--.+.-. -+.+.+.+   .+.-+++.||.|..
T Consensus       101 NLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTET-VLrQA~~E---RIkPvlv~NK~DRA  163 (842)
T KOG0469|consen  101 NLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTET-VLRQAIAE---RIKPVLVMNKMDRA  163 (842)
T ss_pred             EeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHH-HHHHHHHh---hccceEEeehhhHH
Confidence            99999999999998888899999999999988775443321 23333333   35557889999954

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=97.20  E-value=0.00032  Score=47.71  Aligned_cols=23  Identities=30%  Similarity=0.242  Sum_probs=20.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENK   47 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~   47 (205)
                      .++|+|++|+|||||++.+.+..
T Consensus        13 ~~~i~G~nGsGKStLl~~l~g~~   35 (137)
T PF00005_consen   13 IVAIVGPNGSGKSTLLKALAGLL   35 (137)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEEEccCCCccccceeeecccc
Confidence            68999999999999999777654

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>PRK06217 hypothetical protein; Validated

Probab=97.19  E-value=0.00037  Score=50.07  Aligned_cols=23  Identities=22%  Similarity=0.300  Sum_probs=20.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~   46 (205)
                      .||+|+|.+|+|||||.+++...
T Consensus         2 ~~I~i~G~~GsGKSTla~~L~~~   24 (183)
T PRK06217          2 MRIHITGASGSGTTTLGAALAER   24 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999888753

>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation

Probab=97.17  E-value=0.0016  Score=42.00  Aligned_cols=82  Identities=17%  Similarity=0.195  Sum_probs=47.3

Q ss_pred             EEEEC-CCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEEEC
Q psy15714         26 VTTVG-DGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSI  104 (205)
Q Consensus        26 i~v~G-~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~  104 (205)
                      |.+.| ..|+||||+...+...-.... .++..      +..+. .+.+.|+|+|+......  ...+..+|.++++.+.
T Consensus         2 i~~~~~kgG~Gkst~~~~la~~~~~~~-~~vl~------~d~d~-~~d~viiD~p~~~~~~~--~~~l~~ad~viv~~~~   71 (104)
T cd02042           2 IAVANQKGGVGKTTTAVNLAAALARRG-KRVLL------IDLDP-QYDYIIIDTPPSLGLLT--RNALAAADLVLIPVQP   71 (104)
T ss_pred             EEEEeCCCCcCHHHHHHHHHHHHHhCC-CcEEE------EeCCC-CCCEEEEeCcCCCCHHH--HHHHHHCCEEEEeccC
Confidence            56777 568999998744332211010 11111      11111 16789999998754322  3567789999999976


Q ss_pred             CCcchHHHHHHHHHH
Q psy15714        105 GSTSSYENILSKWYP  119 (205)
Q Consensus       105 ~~~~s~~~~~~~~~~  119 (205)
                      + ..++..+. .+++
T Consensus        72 ~-~~s~~~~~-~~~~   84 (104)
T cd02042          72 S-PLDLDGLE-KLLE   84 (104)
T ss_pred             C-HHHHHHHH-HHHH
Confidence            4 45566654 4444

ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.

>PRK03839 putative kinase; Provisional

Probab=97.16  E-value=0.00037  Score=49.90  Aligned_cols=22  Identities=27%  Similarity=0.261  Sum_probs=19.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~   46 (205)
                      +|+++|.||+||||+.+++...
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~   23 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEK   23 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6999999999999999877653

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=97.12  E-value=0.00046  Score=46.40  Aligned_cols=22  Identities=23%  Similarity=0.138  Sum_probs=19.3

Q ss_pred             EEEECCCCCCHHHHHHHHhcCC
Q psy15714         26 VTTVGDGMVGKTCLLITHTENK   47 (205)
Q Consensus        26 i~v~G~~~~GKstli~~~~~~~   47 (205)
                      |++.|++|+|||++++.+...-
T Consensus         1 ill~G~~G~GKT~l~~~la~~l   22 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYL   22 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHT
T ss_pred             CEEECcCCCCeeHHHHHHHhhc
Confidence            6899999999999998877653

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>PRK14530 adenylate kinase; Provisional

Probab=97.09  E-value=0.00049  Score=50.77  Aligned_cols=22  Identities=18%  Similarity=0.146  Sum_probs=19.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHhc
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~   45 (205)
                      .+|+|+|+|||||||+.+.+..
T Consensus         4 ~~I~i~G~pGsGKsT~~~~La~   25 (215)
T PRK14530          4 PRILLLGAPGAGKGTQSSNLAE   25 (215)
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3899999999999999987753

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=97.08  E-value=0.00048  Score=51.85  Aligned_cols=21  Identities=24%  Similarity=0.222  Sum_probs=19.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q psy15714         25 KVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~   45 (205)
                      -++++|+.|+|||||++.+.+
T Consensus        30 i~~iiGpNG~GKSTLLk~l~g   50 (258)
T COG1120          30 ITGILGPNGSGKSTLLKCLAG   50 (258)
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            469999999999999998886

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=97.05  E-value=0.00061  Score=45.89  Aligned_cols=27  Identities=26%  Similarity=0.164  Sum_probs=22.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCC
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTENKFPT   50 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~~~~~   50 (205)
                      -.++++|++|+||||+++.+...-...
T Consensus         3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~   29 (148)
T smart00382        3 EVILIVGPPGSGKTTLARALARELGPP   29 (148)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhccCCC
Confidence            478999999999999999887765433

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=97.04  E-value=0.00051  Score=45.98  Aligned_cols=21  Identities=24%  Similarity=0.175  Sum_probs=18.3

Q ss_pred             EEEECCCCCCHHHHHHHHhcC
Q psy15714         26 VTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        26 i~v~G~~~~GKstli~~~~~~   46 (205)
                      |+|.|.+||||||+++.|...
T Consensus         1 I~i~G~~GsGKtTia~~L~~~   21 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAER   21 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999777654

...

>TIGR00235 udk uridine kinase

Probab=97.04  E-value=0.00078  Score=49.40  Aligned_cols=25  Identities=24%  Similarity=0.183  Sum_probs=21.4

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhc
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~   45 (205)
                      ++..-|+|+|++|+|||||++.+.+
T Consensus         4 ~~g~vi~I~G~sGsGKSTl~~~l~~   28 (207)
T TIGR00235         4 PKGIIIGIGGGSGSGKTTVARKIYE   28 (207)
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHHH
Confidence            4456799999999999999988875

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=97.03  E-value=0.00065  Score=48.94  Aligned_cols=22  Identities=23%  Similarity=0.262  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~   46 (205)
                      .++|+|++|+|||||++.+...
T Consensus         4 ~i~l~G~sGsGKsTl~~~l~~~   25 (186)
T PRK10078          4 LIWLMGPSGSGKDSLLAALRQR   25 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            6899999999999999988654

>COG1161 Predicted GTPases [General function prediction only]

Probab=97.02  E-value=0.00099  Score=52.24  Aligned_cols=93  Identities=22%  Similarity=0.184  Sum_probs=66.7

Q ss_pred             EcCCCc-ccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccc
Q psy15714         77 DTAGQE-DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVD  155 (205)
Q Consensus        77 D~~g~~-~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~  155 (205)
                      +.+|+. ++.......+...|+++-|.|+-++.+-..      ..+.+...+.|.++|+||.|+.+.             
T Consensus        16 ~~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~------~~l~~~v~~k~~i~vlNK~DL~~~-------------   76 (322)
T COG1161          16 WFPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRN------PELERIVKEKPKLLVLNKADLAPK-------------   76 (322)
T ss_pred             CCCCchHHHHHHHHHhcccCCEEEEEEeccccccccC------ccHHHHHccCCcEEEEehhhcCCH-------------
Confidence            457764 455566678999999999999998876433      234455556777999999999876             


Q ss_pred             cccHHHHHHHHHHcCCceEEEcccCCCCCHHHHH
Q psy15714        156 LVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVF  189 (205)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  189 (205)
                      ....+..+.+.+..+.. .+.++++.+.+...+.
T Consensus        77 ~~~~~W~~~~~~~~~~~-~~~v~~~~~~~~~~i~  109 (322)
T COG1161          77 EVTKKWKKYFKKEEGIK-PIFVSAKSRQGGKKIR  109 (322)
T ss_pred             HHHHHHHHHHHhcCCCc-cEEEEeecccCccchH
Confidence            34566677777766555 6777888777655555

>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]

Probab=97.01  E-value=0.0006  Score=47.80  Aligned_cols=21  Identities=24%  Similarity=0.245  Sum_probs=19.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHh
Q psy15714         24 LKVTTVGDGMVGKTCLLITHT   44 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~   44 (205)
                      ++|+|.|.||+||||+.+++.
T Consensus         1 m~I~ITGTPGvGKTT~~~~L~   21 (180)
T COG1936           1 MLIAITGTPGVGKTTVCKLLR   21 (180)
T ss_pred             CeEEEeCCCCCchHHHHHHHH
Confidence            479999999999999998887

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=97.01  E-value=0.0006  Score=50.29  Aligned_cols=23  Identities=30%  Similarity=0.200  Sum_probs=19.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENK   47 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~   47 (205)
                      -++|+|++|||||||++-+-.-.
T Consensus        33 ~vaI~GpSGSGKSTLLniig~ld   55 (226)
T COG1136          33 FVAIVGPSGSGKSTLLNLLGGLD   55 (226)
T ss_pred             EEEEECCCCCCHHHHHHHHhccc
Confidence            57999999999999998665433

>PRK04195 replication factor C large subunit; Provisional

Probab=97.01  E-value=0.0052  Score=51.01  Aligned_cols=25  Identities=24%  Similarity=0.171  Sum_probs=21.1

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCC
Q psy15714         23 ALKVTTVGDGMVGKTCLLITHTENK   47 (205)
Q Consensus        23 ~~ki~v~G~~~~GKstli~~~~~~~   47 (205)
                      .-.+++.|++|+||||+++.+...-
T Consensus        39 ~~~lLL~GppG~GKTtla~ala~el   63 (482)
T PRK04195         39 KKALLLYGPPGVGKTSLAHALANDY   63 (482)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHc
Confidence            3468999999999999999887643

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.00  E-value=0.00063  Score=50.55  Aligned_cols=23  Identities=26%  Similarity=0.228  Sum_probs=19.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENK   47 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~   47 (205)
                      -|+++|++|+|||||++.+.+-.
T Consensus        31 fvsilGpSGcGKSTLLriiAGL~   53 (248)
T COG1116          31 FVAILGPSGCGKSTLLRLIAGLE   53 (248)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57999999999999998777643

>PRK08233 hypothetical protein; Provisional

Probab=97.00  E-value=0.00079  Score=48.09  Aligned_cols=24  Identities=25%  Similarity=0.087  Sum_probs=20.6

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcC
Q psy15714         23 ALKVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        23 ~~ki~v~G~~~~GKstli~~~~~~   46 (205)
                      .+-|+|.|.+|+|||||.+++...
T Consensus         3 ~~iI~I~G~~GsGKtTla~~L~~~   26 (182)
T PRK08233          3 TKIITIAAVSGGGKTTLTERLTHK   26 (182)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhh
Confidence            367889999999999999888754

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=97.00  E-value=0.00068  Score=50.57  Aligned_cols=26  Identities=19%  Similarity=0.308  Sum_probs=22.1

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcC
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~   46 (205)
                      ...+|++|+|.+|+|||+|+..++..
T Consensus        11 ~~~fr~viIG~sGSGKT~li~~lL~~   36 (241)
T PF04665_consen   11 KDPFRMVIIGKSGSGKTTLIKSLLYY   36 (241)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHh
Confidence            45689999999999999999777654

This is thought to be an ATPase involved in viral DNA packaging [].

>TIGR03263 guanyl_kin guanylate kinase

Probab=96.99  E-value=0.0014  Score=46.81  Aligned_cols=22  Identities=27%  Similarity=0.335  Sum_probs=19.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~   46 (205)
                      .|+++|++|+|||||++.+...
T Consensus         3 ii~l~G~~GsGKsTl~~~L~~~   24 (180)
T TIGR03263         3 LIVISGPSGVGKSTLVKALLEE   24 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHcc
Confidence            5899999999999999988874

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>KOG3929|consensus

Probab=96.99  E-value=0.00069  Score=50.54  Aligned_cols=88  Identities=13%  Similarity=0.188  Sum_probs=55.9

Q ss_pred             cccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCE--EEEEEEEEcCCCcccccccccCcCC-
Q psy15714         18 KSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNK--TYDVTLWDTAGQEDYERLRPMSYPN-   94 (205)
Q Consensus        18 ~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~-   94 (205)
                      .....+..|++.|+.+.  ||+|++++...- +...++..-.|+.--...+.  .--..+|+++|-.....+...-+.. 
T Consensus        40 ~~~~~E~~I~~~Gn~~~--tt~I~~~FdR~e-~~~~ptlaLEYtygRR~~g~~~kdiaN~WELGgg~~~~~LLsVPit~~  116 (363)
T KOG3929|consen   40 IAEKFEFFIGSKGNGGK--TTIILRCFDRDE-PPKPPTLALEYTYGRRAKGHNPKDIANFWELGGGTSLLDLLSVPITGD  116 (363)
T ss_pred             hhccceeEEEEecCCce--eEeehhhcCccc-CCCCCceeeeeehhhhccCCCchhHHHHHHhcCCccHHHHhcCccccc
Confidence            34567888999998765  999998887663 34456655555433333332  2236799999977665554333322 


Q ss_pred             ---CcEEEEEEECCCcc
Q psy15714         95 ---TDCFLLCFSIGSTS  108 (205)
Q Consensus        95 ---~~~~i~v~d~~~~~  108 (205)
                         .=.+|++.|.+++.
T Consensus       117 ~l~~~slIL~LDls~p~  133 (363)
T KOG3929|consen  117 TLRTFSLILVLDLSKPN  133 (363)
T ss_pred             chhhhhheeeeecCChH
Confidence               22467888999763

>PRK13949 shikimate kinase; Provisional

Probab=96.98  E-value=0.00074  Score=47.89  Aligned_cols=21  Identities=29%  Similarity=0.186  Sum_probs=18.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q psy15714         25 KVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~   45 (205)
                      +|+|+|++|+||||+.+.+..
T Consensus         3 ~I~liG~~GsGKstl~~~La~   23 (169)
T PRK13949          3 RIFLVGYMGAGKTTLGKALAR   23 (169)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999987664

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=96.97  E-value=0.00069  Score=48.39  Aligned_cols=22  Identities=27%  Similarity=0.249  Sum_probs=19.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~   46 (205)
                      .++|+|++|||||||++.+...
T Consensus         3 ~~~i~G~sGsGKttl~~~l~~~   24 (179)
T TIGR02322         3 LIYVVGPSGAGKDTLLDYARAR   24 (179)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4799999999999999987654

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>PRK14532 adenylate kinase; Provisional

Probab=96.97  E-value=0.00072  Score=48.74  Aligned_cols=22  Identities=18%  Similarity=0.185  Sum_probs=19.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHhc
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~   45 (205)
                      ++|+++|+||+||||+.+++..
T Consensus         1 ~~i~~~G~pGsGKsT~a~~la~   22 (188)
T PRK14532          1 MNLILFGPPAAGKGTQAKRLVE   22 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999988864

>PTZ00088 adenylate kinase 1; Provisional

Probab=96.97  E-value=0.00075  Score=50.27  Aligned_cols=24  Identities=25%  Similarity=0.271  Sum_probs=20.7

Q ss_pred             eeeEEEEECCCCCCHHHHHHHHhc
Q psy15714         22 KALKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        22 ~~~ki~v~G~~~~GKstli~~~~~   45 (205)
                      ..+||+|+|+|||||||+.+.+..
T Consensus         5 ~~mrIvl~G~PGsGK~T~a~~La~   28 (229)
T PTZ00088          5 GPLKIVLFGAPGVGKGTFAEILSK   28 (229)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            347899999999999999987764

>PRK05480 uridine/cytidine kinase; Provisional

Probab=96.97  E-value=0.00094  Score=49.02  Aligned_cols=26  Identities=27%  Similarity=0.289  Sum_probs=22.4

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcC
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~   46 (205)
                      .+...|+|.|++|+|||||.+.+...
T Consensus         4 ~~~~iI~I~G~sGsGKTTl~~~l~~~   29 (209)
T PRK05480          4 KKPIIIGIAGGSGSGKTTVASTIYEE   29 (209)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            46789999999999999999877653

>PLN03025 replication factor C subunit; Provisional

Probab=96.97  E-value=0.0082  Score=47.09  Aligned_cols=24  Identities=17%  Similarity=0.169  Sum_probs=20.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCC
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTENK   47 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~~   47 (205)
                      ..+++.|++|+||||++..+...-
T Consensus        35 ~~lll~Gp~G~GKTtla~~la~~l   58 (319)
T PLN03025         35 PNLILSGPPGTGKTTSILALAHEL   58 (319)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHH
Confidence            358999999999999998776544

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=96.96  E-value=0.00072  Score=49.85  Aligned_cols=21  Identities=29%  Similarity=0.377  Sum_probs=19.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q psy15714         25 KVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~   45 (205)
                      -|+++|++|+|||||++.+.+
T Consensus        32 ~VaiIG~SGaGKSTLLR~lng   52 (258)
T COG3638          32 MVAIIGPSGAGKSTLLRSLNG   52 (258)
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            589999999999999998877

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=96.95  E-value=0.00081  Score=47.99  Aligned_cols=24  Identities=21%  Similarity=0.144  Sum_probs=20.3

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHh
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHT   44 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~   44 (205)
                      ..--+++++|+.|+|||||++.+.
T Consensus        19 ~~G~~~~l~G~nG~GKSTLl~~il   42 (176)
T cd03238          19 PLNVLVVVTGVSGSGKSTLVNEGL   42 (176)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHh
Confidence            344578999999999999999875

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>KOG3347|consensus

Probab=96.95  E-value=0.00065  Score=46.47  Aligned_cols=25  Identities=20%  Similarity=0.215  Sum_probs=21.6

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhc
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~   45 (205)
                      ....+|+|.|.||+|||||..++..
T Consensus         5 r~~PNILvtGTPG~GKstl~~~lae   29 (176)
T KOG3347|consen    5 RERPNILVTGTPGTGKSTLAERLAE   29 (176)
T ss_pred             hcCCCEEEeCCCCCCchhHHHHHHH
Confidence            4567999999999999999988773

>KOG0066|consensus

Probab=96.94  E-value=0.0063  Score=49.15  Aligned_cols=26  Identities=27%  Similarity=0.321  Sum_probs=21.6

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcC
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~   46 (205)
                      ...-||+|+|+.|+|||||+.-+.+.
T Consensus       611 DmdSRiaIVGPNGVGKSTlLkLL~Gk  636 (807)
T KOG0066|consen  611 DMDSRIAIVGPNGVGKSTLLKLLIGK  636 (807)
T ss_pred             cccceeEEECCCCccHHHHHHHHhcC
Confidence            34569999999999999999766653

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=96.94  E-value=0.00084  Score=45.89  Aligned_cols=21  Identities=33%  Similarity=0.395  Sum_probs=18.9

Q ss_pred             EEEECCCCCCHHHHHHHHhcC
Q psy15714         26 VTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        26 i~v~G~~~~GKstli~~~~~~   46 (205)
                      |+++|++|+|||||++.+...
T Consensus         2 i~i~GpsGsGKstl~~~L~~~   22 (137)
T cd00071           2 IVLSGPSGVGKSTLLKRLLEE   22 (137)
T ss_pred             EEEECCCCCCHHHHHHHHHhc
Confidence            689999999999999988864

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster

Probab=96.93  E-value=0.0037  Score=40.67  Aligned_cols=61  Identities=18%  Similarity=0.076  Sum_probs=40.8

Q ss_pred             EEEEEEcCCCcccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhC-C-CCCEEEEeeC
Q psy15714         72 DVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-P-KVPIILVGTK  136 (205)
Q Consensus        72 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~-~~p~ivv~nK  136 (205)
                      .+.|.|+|+.....  ....+..+|.++++.+.+ ..+...+. .++..+++.. + ...+.+|+|+
T Consensus        44 D~IIiDtpp~~~~~--~~~~l~~aD~vlvvv~~~-~~s~~~~~-~~~~~l~~~~~~~~~~~~lVvNr  106 (106)
T cd03111          44 DYVVVDLGRSLDEV--SLAALDQADRVFLVTQQD-LPSIRNAK-RLLELLRVLDYSLPAKIELVLNR  106 (106)
T ss_pred             CEEEEeCCCCcCHH--HHHHHHHcCeEEEEecCC-hHHHHHHH-HHHHHHHHcCCCCcCceEEEecC
Confidence            68899998865432  234678899999998755 44566655 5666666654 2 3566677774

The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.

>PRK14531 adenylate kinase; Provisional

Probab=96.93  E-value=0.00088  Score=48.14  Aligned_cols=22  Identities=14%  Similarity=0.064  Sum_probs=19.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHhc
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~   45 (205)
                      .+|+++|+||+||||+.+++..
T Consensus         3 ~~i~i~G~pGsGKsT~~~~la~   24 (183)
T PRK14531          3 QRLLFLGPPGAGKGTQAARLCA   24 (183)
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4899999999999999887754

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=96.93  E-value=0.00085  Score=46.03  Aligned_cols=22  Identities=32%  Similarity=0.339  Sum_probs=19.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~   46 (205)
                      .|+|+|+.++|||||++.+.+.
T Consensus         2 vv~VvG~~~sGKTTl~~~Li~~   23 (140)
T PF03205_consen    2 VVQVVGPKNSGKTTLIRKLINE   23 (140)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999887754

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=96.92  E-value=0.0008  Score=50.47  Aligned_cols=21  Identities=24%  Similarity=0.259  Sum_probs=19.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q psy15714         25 KVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~   45 (205)
                      -+.++|+.|+|||||++.+.+
T Consensus        32 ~~~iiGPNGaGKSTLlK~iLG   52 (254)
T COG1121          32 ITALIGPNGAGKSTLLKAILG   52 (254)
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            579999999999999999987

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=96.92  E-value=0.00081  Score=48.31  Aligned_cols=22  Identities=23%  Similarity=0.063  Sum_probs=19.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHhc
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~   45 (205)
                      ..|+++|++||||||+++.+..
T Consensus         4 ~ii~i~G~~GsGKsTl~~~l~~   25 (188)
T TIGR01360         4 KIIFIVGGPGSGKGTQCEKIVE   25 (188)
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999988873

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>KOG2423|consensus

Probab=96.91  E-value=0.0069  Score=48.09  Aligned_cols=87  Identities=14%  Similarity=0.104  Sum_probs=66.0

Q ss_pred             CcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcC
Q psy15714         91 SYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIK  170 (205)
Q Consensus        91 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (205)
                      .+...|++|-|.|+-|+..-..  ...-..++...+...+++|+||+||...             .++......+++.+.
T Consensus       210 ViDSSDVvvqVlDARDPmGTrc--~~ve~ylkke~phKHli~vLNKvDLVPt-------------wvt~~Wv~~lSkeyP  274 (572)
T KOG2423|consen  210 VIDSSDVVVQVLDARDPMGTRC--KHVEEYLKKEKPHKHLIYVLNKVDLVPT-------------WVTAKWVRHLSKEYP  274 (572)
T ss_pred             hhcccceeEEeeeccCCccccc--HHHHHHHhhcCCcceeEEEeeccccccH-------------HHHHHHHHHHhhhCc
Confidence            3667899999999998854322  1344556666688999999999999876             678888999999998


Q ss_pred             CceEEEcccCCCCCHHHHHHHHH
Q psy15714        171 AAEYLECSAKLNEGLDQVFIAAV  193 (205)
Q Consensus       171 ~~~~~~~Sa~~~~~i~~~~~~i~  193 (205)
                      .. .|..|.....|-..+..-+.
T Consensus       275 Ti-AfHAsi~nsfGKgalI~llR  296 (572)
T KOG2423|consen  275 TI-AFHASINNSFGKGALIQLLR  296 (572)
T ss_pred             ce-eeehhhcCccchhHHHHHHH
Confidence            87 78888887787544444333

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=96.90  E-value=0.0031  Score=42.72  Aligned_cols=24  Identities=29%  Similarity=0.155  Sum_probs=20.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCC
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTENK   47 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~~   47 (205)
                      --|++.|+.|+|||||++.+...-
T Consensus        23 ~~i~l~G~lGaGKTtl~~~l~~~l   46 (133)
T TIGR00150        23 TVVLLKGDLGAGKTTLVQGLLQGL   46 (133)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHc
Confidence            358999999999999999888753

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=96.90  E-value=0.00091  Score=47.79  Aligned_cols=24  Identities=21%  Similarity=0.131  Sum_probs=20.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCC
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTENK   47 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~~   47 (205)
                      -.++++|+.|+|||||++.+.+-.
T Consensus        26 e~~~l~G~nGsGKSTLl~~l~Gl~   49 (177)
T cd03222          26 EVIGIVGPNGTGKTTAVKILAGQL   49 (177)
T ss_pred             CEEEEECCCCChHHHHHHHHHcCC
Confidence            478999999999999999877654

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=96.89  E-value=0.00096  Score=49.25  Aligned_cols=24  Identities=29%  Similarity=0.163  Sum_probs=20.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCC
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTENK   47 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~~   47 (205)
                      =.++++|++|+|||||++.+.+-.
T Consensus        31 ~~~~l~G~nGsGKSTLl~~i~Gl~   54 (218)
T cd03255          31 EFVAIVGPSGSGKSTLLNILGGLD   54 (218)
T ss_pred             CEEEEEcCCCCCHHHHHHHHhCCc
Confidence            368999999999999999888653

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>PRK02496 adk adenylate kinase; Provisional

Probab=96.89  E-value=0.001  Score=47.75  Aligned_cols=22  Identities=18%  Similarity=0.212  Sum_probs=19.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHhc
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~   45 (205)
                      .|++|+|+||+||||+.+.+..
T Consensus         2 ~~i~i~G~pGsGKst~a~~la~   23 (184)
T PRK02496          2 TRLIFLGPPGAGKGTQAVVLAE   23 (184)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999987764

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=96.89  E-value=0.00096  Score=43.32  Aligned_cols=21  Identities=33%  Similarity=0.411  Sum_probs=18.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHh
Q psy15714         24 LKVTTVGDGMVGKTCLLITHT   44 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~   44 (205)
                      -.++++|++|+|||||++.+.
T Consensus        16 e~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          16 VGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             EEEEEEcCCCCCHHHHHHHhh
Confidence            467999999999999998875

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop

Probab=96.89  E-value=0.0052  Score=41.02  Aligned_cols=24  Identities=21%  Similarity=0.087  Sum_probs=20.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCC
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTENK   47 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~~   47 (205)
                      --|++-|+-|+|||||++.+...-
T Consensus        16 ~vi~L~GdLGaGKTtf~r~l~~~l   39 (123)
T PF02367_consen   16 DVILLSGDLGAGKTTFVRGLARAL   39 (123)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHc
Confidence            358999999999999998887643

They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=96.88  E-value=0.0023  Score=55.34  Aligned_cols=22  Identities=27%  Similarity=0.158  Sum_probs=18.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHhc
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~   45 (205)
                      --|+++|+.|+||||.+.++..
T Consensus       186 ~Vi~lVGpnGvGKTTTiaKLA~  207 (767)
T PRK14723        186 GVLALVGPTGVGKTTTTAKLAA  207 (767)
T ss_pred             eEEEEECCCCCcHHHHHHHHHh
Confidence            3689999999999999866653

>PLN02200 adenylate kinase family protein

Probab=96.87  E-value=0.0014  Score=48.98  Aligned_cols=25  Identities=16%  Similarity=0.069  Sum_probs=21.3

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhc
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~   45 (205)
                      ...+.|+|+|+||+||||+..++..
T Consensus        41 ~~~~ii~I~G~PGSGKsT~a~~La~   65 (234)
T PLN02200         41 KTPFITFVLGGPGSGKGTQCEKIVE   65 (234)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3457899999999999999887764

>PRK00625 shikimate kinase; Provisional

Probab=96.86  E-value=0.001  Score=47.36  Aligned_cols=21  Identities=24%  Similarity=0.213  Sum_probs=18.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q psy15714         25 KVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~   45 (205)
                      +|+++|.+|+||||+.+.+..
T Consensus         2 ~I~LiG~pGsGKTT~~k~La~   22 (173)
T PRK00625          2 QIFLCGLPTVGKTSFGKALAK   22 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999987754

>cd01131 PilT Pilus retraction ATPase PilT

Probab=96.86  E-value=0.0026  Score=46.37  Aligned_cols=23  Identities=22%  Similarity=0.160  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENK   47 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~   47 (205)
                      -|+|+|++|+||||+++.+....
T Consensus         3 lilI~GptGSGKTTll~~ll~~~   25 (198)
T cd01131           3 LVLVTGPTGSGKSTTLAAMIDYI   25 (198)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            37999999999999998877654

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=96.86  E-value=0.0009  Score=45.68  Aligned_cols=21  Identities=33%  Similarity=0.243  Sum_probs=18.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q psy15714         25 KVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~   45 (205)
                      .|+++|++|+|||+|++.+..
T Consensus         1 ~vlL~G~~G~GKt~l~~~la~   21 (139)
T PF07728_consen    1 PVLLVGPPGTGKTTLARELAA   21 (139)
T ss_dssp             EEEEEESSSSSHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            379999999999999977664

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=96.85  E-value=0.00085  Score=48.47  Aligned_cols=22  Identities=14%  Similarity=0.123  Sum_probs=19.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~   46 (205)
                      +|+|+|+||+||||+.+.+...
T Consensus         1 ~I~i~G~pGsGKst~a~~La~~   22 (194)
T cd01428           1 RILLLGPPGSGKGTQAERLAKK   22 (194)
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999887753

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=96.84  E-value=0.0015  Score=46.48  Aligned_cols=24  Identities=25%  Similarity=0.199  Sum_probs=20.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENKF   48 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~~   48 (205)
                      +++|+|++|+|||||+|-+.+-..
T Consensus        27 ~vAi~GpSGaGKSTLLnLIAGF~~   50 (231)
T COG3840          27 IVAILGPSGAGKSTLLNLIAGFET   50 (231)
T ss_pred             EEEEECCCCccHHHHHHHHHhccC
Confidence            689999999999999997776544

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=96.84  E-value=0.0012  Score=47.66  Aligned_cols=25  Identities=24%  Similarity=0.117  Sum_probs=21.3

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCC
Q psy15714         23 ALKVTTVGDGMVGKTCLLITHTENK   47 (205)
Q Consensus        23 ~~ki~v~G~~~~GKstli~~~~~~~   47 (205)
                      .-.++++|++|+|||||++.+.+-.
T Consensus        25 g~~i~I~G~tGSGKTTll~aL~~~i   49 (186)
T cd01130          25 RKNILISGGTGSGKTTLLNALLAFI   49 (186)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhc
Confidence            3478999999999999999887643

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=96.83  E-value=0.0012  Score=48.56  Aligned_cols=24  Identities=29%  Similarity=0.119  Sum_probs=20.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCC
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTENK   47 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~~   47 (205)
                      =.++++|+.|+|||||++.+.+-.
T Consensus        28 ~~~~l~G~nGsGKSTLl~~l~G~~   51 (211)
T cd03225          28 EFVLIVGPNGSGKSTLLRLLNGLL   51 (211)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCC
Confidence            368999999999999999888653

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=96.83  E-value=0.0012  Score=47.72  Aligned_cols=23  Identities=22%  Similarity=0.270  Sum_probs=20.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENK   47 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~   47 (205)
                      .++++|+.|+|||||++.+.+-.
T Consensus        20 ~~~i~G~nGsGKSTLl~~i~G~~   42 (190)
T TIGR01166        20 VLALLGANGAGKSTLLLHLNGLL   42 (190)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999887643

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=96.83  E-value=0.0012  Score=48.37  Aligned_cols=24  Identities=21%  Similarity=0.090  Sum_probs=20.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCC
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTENK   47 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~~   47 (205)
                      =.++++|+.|+|||||++.+.+-.
T Consensus        27 e~~~i~G~nGsGKSTLl~~l~Gl~   50 (205)
T cd03226          27 EIIALTGKNGAGKTTLAKILAGLI   50 (205)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            378999999999999999887653

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=96.82  E-value=0.0012  Score=48.71  Aligned_cols=24  Identities=25%  Similarity=0.149  Sum_probs=20.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCC
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTENK   47 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~~   47 (205)
                      =.++++|++|+|||||++.+.+-.
T Consensus        30 e~~~i~G~nGsGKSTLl~~l~Gl~   53 (216)
T TIGR00960        30 EMVFLVGHSGAGKSTFLKLILGIE   53 (216)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            368999999999999999888653

>KOG2423|consensus

Probab=96.82  E-value=0.0011  Score=52.44  Aligned_cols=87  Identities=16%  Similarity=0.113  Sum_probs=51.3

Q ss_pred             cccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCccc--ccccccCcCCC
Q psy15714         18 KSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY--ERLRPMSYPNT   95 (205)
Q Consensus        18 ~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~--~~~~~~~~~~~   95 (205)
                      +...+++-|.++|-|++||||+||.|...+.+. ..|..+....=.+.  --...+.++|+||----  .+-....+   
T Consensus       302 h~dkkqISVGfiGYPNvGKSSiINTLR~KkVCk-vAPIpGETKVWQYI--tLmkrIfLIDcPGvVyps~dset~ivL---  375 (572)
T KOG2423|consen  302 HSDKKQISVGFIGYPNVGKSSIINTLRKKKVCK-VAPIPGETKVWQYI--TLMKRIFLIDCPGVVYPSSDSETDIVL---  375 (572)
T ss_pred             ccCccceeeeeecCCCCchHHHHHHHhhccccc-ccCCCCcchHHHHH--HHHhceeEecCCCccCCCCCchHHHHh---
Confidence            457889999999999999999999999888643 23333322210000  00124677899994211  11111122   


Q ss_pred             cEEEEEEECCCcchH
Q psy15714         96 DCFLLCFSIGSTSSY  110 (205)
Q Consensus        96 ~~~i~v~d~~~~~s~  110 (205)
                      .++|-|=.+.+++.+
T Consensus       376 kGvVRVenv~~pe~y  390 (572)
T KOG2423|consen  376 KGVVRVENVKNPEDY  390 (572)
T ss_pred             hceeeeeecCCHHHH
Confidence            356666667766443

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=96.82  E-value=0.0011  Score=48.23  Aligned_cols=21  Identities=24%  Similarity=0.243  Sum_probs=18.4

Q ss_pred             EEEECCCCCCHHHHHHHHhcC
Q psy15714         26 VTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        26 i~v~G~~~~GKstli~~~~~~   46 (205)
                      |.|.|++|+|||||.+.+.+.
T Consensus         2 igi~G~~GsGKSTl~~~l~~~   22 (198)
T cd02023           2 IGIAGGSGSGKTTVAEEIIEQ   22 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            689999999999999887653

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=96.81  E-value=0.0015  Score=46.40  Aligned_cols=24  Identities=21%  Similarity=0.050  Sum_probs=20.7

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcC
Q psy15714         23 ALKVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        23 ~~ki~v~G~~~~GKstli~~~~~~   46 (205)
                      ..-+.|+|.+|+|||||++++...
T Consensus         6 ~~ii~ivG~sgsGKTTLi~~li~~   29 (173)
T PRK10751          6 IPLLAIAAWSGTGKTTLLKKLIPA   29 (173)
T ss_pred             ceEEEEECCCCChHHHHHHHHHHH
Confidence            346899999999999999888765

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=96.81  E-value=0.0011  Score=47.46  Aligned_cols=20  Identities=25%  Similarity=0.159  Sum_probs=18.1

Q ss_pred             EEEECCCCCCHHHHHHHHhc
Q psy15714         26 VTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        26 i~v~G~~~~GKstli~~~~~   45 (205)
                      |+++|+|||||||+.+++..
T Consensus         2 i~i~G~pGsGKst~a~~la~   21 (183)
T TIGR01359         2 VFVLGGPGSGKGTQCAKIVE   21 (183)
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999988765

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=96.81  E-value=0.0012  Score=49.32  Aligned_cols=23  Identities=22%  Similarity=0.170  Sum_probs=20.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENK   47 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~   47 (205)
                      .++++|+.|+|||||++.+.+-.
T Consensus        28 ~~~l~G~nGsGKSTLl~~l~G~~   50 (235)
T cd03261          28 ILAIIGPSGSGKSTLLRLIVGLL   50 (235)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999888653

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=96.81  E-value=0.0012  Score=48.49  Aligned_cols=23  Identities=26%  Similarity=0.098  Sum_probs=20.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~   46 (205)
                      =.++++|+.|+|||||++.+.+-
T Consensus        29 ~~~~l~G~nGsGKSTLl~~i~Gl   51 (214)
T TIGR02673        29 EFLFLTGPSGAGKTTLLKLLYGA   51 (214)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            36899999999999999988764

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=96.79  E-value=0.0013  Score=48.02  Aligned_cols=23  Identities=22%  Similarity=0.195  Sum_probs=20.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENK   47 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~   47 (205)
                      .++|+|++|+|||||++.+.+-.
T Consensus        26 ~~~i~G~nGsGKSTLl~~l~G~~   48 (206)
T TIGR03608        26 MYAIIGESGSGKSTLLNIIGLLE   48 (206)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            68999999999999999887653

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=96.79  E-value=0.0013  Score=48.34  Aligned_cols=22  Identities=27%  Similarity=0.200  Sum_probs=19.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~   46 (205)
                      .++++|+.|+|||||++.+.+-
T Consensus        28 ~~~i~G~nGsGKSTLl~~l~G~   49 (213)
T cd03259          28 FLALLGPSGCGKTTLLRLIAGL   49 (213)
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999988764

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=96.78  E-value=0.0013  Score=48.31  Aligned_cols=23  Identities=30%  Similarity=0.255  Sum_probs=20.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENK   47 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~   47 (205)
                      .++++|++|+|||||++.+.+-.
T Consensus        29 ~~~i~G~nGsGKSTLl~~l~G~~   51 (214)
T cd03292          29 FVFLVGPSGAGKSTLLKLIYKEE   51 (214)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            68999999999999999887653

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>TIGR01351 adk adenylate kinases

Probab=96.78  E-value=0.001  Score=48.89  Aligned_cols=21  Identities=19%  Similarity=0.159  Sum_probs=18.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q psy15714         25 KVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~   45 (205)
                      ||+|+|+|||||||+...+..
T Consensus         1 rI~i~G~pGsGKsT~a~~La~   21 (210)
T TIGR01351         1 RLVLLGPPGSGKGTQAKRIAE   21 (210)
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999988764

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=96.78  E-value=0.0014  Score=48.54  Aligned_cols=23  Identities=22%  Similarity=0.083  Sum_probs=20.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~   46 (205)
                      =.++++|+.|+|||||++.+.+-
T Consensus        27 e~~~i~G~nGsGKSTLl~~i~G~   49 (220)
T cd03265          27 EIFGLLGPNGAGKTTTIKMLTTL   49 (220)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            36899999999999999988765

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	205
1i4d_D	192	Crystal Structure Analysis Of Rac1-Gdp Complexed Wi		2e-58
3sua_A	184	Crystal Structure Of The Intracellular Domain Of Pl		2e-58
2yin_C	196	Structure Of The Complex Between Dock2 And Rac1. Le		2e-58
3th5_A	204	Crystal Structure Of Wild-Type Rac1 Length = 204		5e-58
2fju_A	178	Activated Rac1 Bound To Its Effector Phospholipase		6e-58
1foe_B	177	Crystal Structure Of Rac1 In Complex With The Guani		6e-58
2vrw_A	184	Critical Structural Role For The Ph And C1 Domains		8e-58
1he1_C	176	Crystal Structure Of The Complex Between The Gap Do		9e-58
1ds6_A	192	Crystal Structure Of A Rac-Rhogdi Complex Length =		1e-57
1i4t_D	192	Crystal Structure Analysis Of Rac1-Gmppnp In Comple		1e-57
1e96_A	192	Structure Of The RacP67PHOX COMPLEX Length = 192		1e-57
3b13_B	184	Crystal Structure Of The Dhr-2 Domain Of Dock2 In C		2e-57
1hh4_A	192	Rac1-Rhogdi Complex Involved In Nadph Oxidase Activ		3e-57
4gzm_A	204	Crystal Structure Of Rac1 F28l Mutant Length = 204		3e-57
2ic5_A	180	Crystal Structure Of Human Rac3 Grown In The Presen		4e-57
4gzl_A	204	Crystal Structure Of Rac1 Q61l Mutant Length = 204		4e-57
2g0n_A	179	The Crystal Structure Of The Human Rac3 In Complex		4e-57
2c2h_A	192	Crystal Structure Of The Human Rac3 In Complex With		5e-57
3ryt_C	180	The Plexin A1 Intracellular Region In Complex With		6e-57
3sbd_A	187	Crystal Structure Of Rac1 P29s Mutant Length = 187		7e-57
2h7v_A	188	Co-crystal Structure Of Ypka-rac1 Length = 188		8e-57
1g4u_R	184	Crystal Structure Of The Salmonella Tyrosine Phosph		1e-56
1mh1_A	186	Small G-Protein Length = 186		1e-56
2w2v_A	184	Rac2 (G12v) In Complex With Gtpgs Length = 184		4e-56
2w2t_A	185	Rac2 (G12v) In Complex With Gdp Length = 185		5e-56
2wkr_A	332	Structure Of A Photoactivatable Rac1 Containing The		2e-55
2wkq_A	332	Structure Of A Photoactivatable Rac1 Containing The		2e-55
2wkp_A	332	Structure Of A Photoactivatable Rac1 Containing Lov		3e-55
1ryf_A	203	Alternative Splicing Of Rac1 Generates Rac1b, A Sel		2e-54
1aje_A	194	Cdc42 From Human, Nmr, 20 Structures Length = 194		5e-54
2wbl_C	180	Three-Dimensional Structure Of A Binary Rop-Prone C		8e-54
4did_A	193	Crystal Structure Of Salmonella Effector N-Terminal		1e-53
2odb_A	192	The Crystal Structure Of Human Cdc42 In Complex Wit		1e-53
1grn_A	191	Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.		1e-53
1kz7_B	188	Crystal Structure Of The DhPH FRAGMENT OF MURINE DB		2e-53
1gzs_A	180	Crystal Structure Of The Complex Between The Gef Do		2e-53
3gcg_A	182	Crystal Structure Of Map And Cdc42 Complex Length =		2e-53
2dfk_B	194	Crystal Structure Of The Cdc42-Collybistin Ii Compl		2e-53
1cee_A	179	Solution Structure Of Cdc42 In Complex With The Gtp		2e-53
2qrz_A	189	Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is		2e-53
1ees_A	178	Solution Structure Of Cdc42hs Complexed With A Pept		2e-53
1doa_A	191	Structure Of The Rho Family Gtp-Binding Protein Cdc		2e-53
2wm9_B	190	Structure Of The Complex Between Dock9 And Cdc42. L		2e-53
1an0_A	190	Cdc42hs-Gdp Complex Length = 190		2e-53
3eg5_A	178	Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex W		2e-53
1am4_D	177	Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. S		3e-53
3vhl_B	195	Crystal Structure Of The Dhr-2 Domain Of Dock8 In C		4e-53
3qbv_A	178	Structure Of Designed Orthogonal Interaction Betwee		6e-53
2kb0_A	178	Cdc42(T35a) Length = 178		6e-53
2ase_A	178	Nmr Structure Of The F28l Mutant Of Cdc42hs Length		9e-53
1nf3_A	195	Structure Of Cdc42 In A Complex With The Gtpase-Bin		1e-52
1cf4_A	184	Cdc42ACK GTPASE-Binding Domain Complex Length = 184		1e-52
2j0v_A	212	The Crystal Structure Of Arabidopsis Thaliana Rac7-		1e-52
1a4r_B	191	G12v Mutant Of Human Placental Cdc42 Gtpase In The		2e-52
3bwd_D	182	Crystal Structure Of The Plant Rho Protein Rop5 Len		3e-52
2fv8_A	207	The Crystal Structure Of Rhob In The Gdp-Bound Stat		6e-52
1z2c_A	193	Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With		2e-51
2gcn_A	201	Crystal Structure Of The Human Rhoc-Gdp Complex Len		3e-51
2nty_C	180	Rop4-Gdp-Prone8 Length = 180		4e-51
1ow3_B	193	Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With		5e-51
1cc0_A	190	Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Le		6e-51
1lb1_B	192	Crystal Structure Of The Dbl And Pleckstrin Homolog		7e-51
3msx_A	180	Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With		7e-51
3tvd_A	193	Crystal Structure Of Mouse Rhoa-Gtp Complex Length		8e-51
1xcg_B	178	Crystal Structure Of Human Rhoa In Complex With DhP		8e-51
1x86_B	196	Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-A		9e-51
1s1c_A	183	Crystal Structure Of The Complex Between The Human		1e-50
4f38_A	195	Crystal Structure Of Geranylgeranylated Rhoa In Com		1e-50
3lw8_A	185	Shigella Ipgb2 In Complex With Human Rhoa, Gdp And		1e-50
3kz1_E	182	Crystal Structure Of The Complex Of Pdz-Rhogef DhPH		1e-50
1tx4_B	177	RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177		1e-50
2gco_A	201	Crystal Structure Of The Human Rhoc-gppnhp Complex		4e-50
1kmq_A	184	Crystal Structure Of A Constitutively Activated Rho		7e-50
1cxz_A	182	Crystal Structure Of Human Rhoa Complexed With The		1e-49
1dpf_A	180	Crystal Structure Of A Mg-Free Form Of Rhoa Complex		2e-49
2atx_A	194	Crystal Structure Of The Tc10 Gppnhp Complex Length		5e-47
3a58_B	188	Crystal Structure Of Sec3p - Rho1p Complex From Sac		3e-46
2q3h_A	201	The Crystal Structure Of Rhoua In The Gdp-bound Sta		7e-46
2j1l_A	214	Crystal Structure Of Human Rho-Related Gtp-Binding		2e-44
3ref_B	194	Crystal Structure Of Ehrho1 Bound To Gdp And Magnes		8e-39
4dvg_A	188	Crystal Structure Of E. Histolytica Formin1 Bound T		9e-39
2v55_B	200	Mechanism Of Multi-site Phosphorylation From A Rock		2e-34
1m7b_A	184	Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATI		2e-34
1gwn_A	205	The Crystal Structure Of The Core Domain Of RhoeRND		2e-34
3q3j_B	214	Crystal Structure Of Plexin A2 Rbd In Complex With		9e-26
2rex_B	197	Crystal Structure Of The Effector Domain Of Plxnb1		9e-26
2cls_A	198	The Crystal Structure Of The Human Rnd1 Gtpase In T		9e-26
4epr_A	170	Discovery Of Small Molecules That Bind To K-Ras And		2e-19
4dso_A	189	Small-Molecule Ligands Bind To A Distinct Pocket In		2e-18
2ery_A	172	The Crystal Structure Of The Ras Related Protein Rr		7e-18
1agp_A	166	Three-Dimensional Structures And Properties Of A Tr		8e-18
421p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		1e-17
1clu_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		2e-17
1jah_A	166	H-Ras P21 Protein Mutant G12p, Complexed With Guano		2e-17
3cph_A	213	Crystal Structure Of Sec4 In Complex With Rab-Gdi L		5e-17
4epx_A	170	Discovery Of Small Molecules That Bind To K-Ras And		5e-17
4ept_A	170	Discovery Of Small Molecules That Bind To K-Ras And		5e-17
1wms_A	177	High Resolution Crystal Structure Of Human Rab9 Gtp		9e-17
2a78_A	187	Crystal Structure Of The C3bot-Rala Complex Reveals		2e-16
1uad_A	175	Crystal Structure Of The Rala-gppnhp-sec5 Ral-bindi		2e-16
2kwi_A	178	Ralb-Rlip76 (Ralbp1) Complex Length = 178		2e-16
2bov_A	206	Molecular Recognition Of An Adp-Ribosylating Clostr		3e-16
2bku_A	177	Kap95p:rangtp Complex Length = 177		3e-16
2eqb_A	174	Crystal Structure Of The Rab Gtpase Sec4p, The Sec2		3e-16
2ke5_A	174	Solution Structure And Dynamics Of The Small Gtpase		3e-16
2f9l_A	199	3d Structure Of Inactive Human Rab11b Gtpase Length		3e-16
1g17_A	170	Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)		3e-16
1s8f_A	177	Crystal Structure Of Rab9 Complexed To Gdp Reveals		4e-16
3t5g_A	181	Structure Of Fully Modified Farnesylated Rheb In Co		4e-16
3gft_A	187	Human K-Ras In Complex With A Gtp Analogue Length =		5e-16
1u8y_A	168	Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal		5e-16
2ocy_C	170	Complex Of The Guanine Exchange Factor Sec2p And Th		6e-16
1byu_A	216	Canine Gdp-Ran Length = 216		7e-16
1g16_A	170	Crystal Structure Of Sec4-Gdp Length = 170		8e-16
2fu5_C	183	Structure Of Rab8 In Complex With Mss4 Length = 183		9e-16
1yzl_A	179	Gppnhp-Bound Rab9 Gtpase Length = 179		1e-15
3qbt_A	174	Crystal Structure Of Ocrl1 540-678 In Complex With		1e-15
2cld_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		1e-15
1yzk_A	184	Gppnhp Bound Rab11 Gtpase Length = 184		1e-15
3brw_D	167	Structure Of The Rap-Rapgap Complex Length = 167		2e-15
1z08_A	170	Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170		2e-15
1oiv_A	191	X-Ray Structure Of The Small G Protein Rab11a In Co		2e-15
2c5l_A	173	Structure Of Plc Epsilon Ras Association Domain Wit		2e-15
1yzu_A	170	Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Leng		2e-15
1yzt_A	184	Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Leng		2e-15
1zc3_A	175	Crystal Structure Of The Ral-Binding Domain Of Exo8		2e-15
1wa5_A	176	Crystal Structure Of The Exportin Cse1p Complexed W		2e-15
1ky2_A	182	Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182		2e-15
2ocb_A	180	Crystal Structure Of Human Rab9b In Complex With A		3e-15
6q21_A	171	Molecular Switch For Signal Transduction: Structura		3e-15
2q21_A	171	Crystal Structures At 2.2 Angstroms Resolution Of T		3e-15
1qg4_A	216	Canine Gdp-Ran F72y Mutant Length = 216		3e-15
1xtq_A	177	Structure Of Small Gtpase Human Rheb In Complex Wit		3e-15
4efm_A	171	Crystal Structure Of H-Ras G12v In Complex With Gpp		3e-15
4efl_A	171	Crystal Structure Of H-Ras Wt In Complex With Gppnh		3e-15
1wq1_R	166	Ras-Rasgap Complex Length = 166		3e-15
1rvd_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		3e-15
1gua_A	167	Human Rap1a, Residues 1-167, Double Mutant (E30d,K3		3e-15
2x1v_A	166	Crystal Structure Of The Activating H-Ras I163f Mut		3e-15
4q21_A	189	Molecular Switch For Signal Transduction: Structura		5e-15
2l0x_A	169	Solution Structure Of The 21 Kda Gtpase Rheb Bound		5e-15
3lo5_A	166	Crystal Structure Of The Dominant Negative S17n Mut		5e-15
3v4f_A	166	H-Ras Peg 400CACL2, ORDERED OFF Length = 166		6e-15
2quz_A	166	Crystal Structure Of The Activating H-Rask117r Muta		6e-15
1rrp_A	204	Structure Of The Ran-Gppnhp-Ranbd1 Complex Length =		6e-15
3ddc_A	166	Crystal Structure Of Nore1a In Complex With Ras Len		6e-15
3kkm_A	172	Crystal Structure Of H-Ras T35s In Complex With Gpp		6e-15
1lfd_B	167	Crystal Structure Of The Active Ras Protein Complex		7e-15
1c1y_A	167	Crystal Structure Of Rap.Gmppnp In Complex With The		7e-15
1a2k_C	216	Gdpran-Ntf2 Complex Length = 216		7e-15
3gj0_A	221	Crystal Structure Of Human Rangdp Length = 221		7e-15
3ea5_A	216	Kap95p Binding Induces The Switch Loops Of Rangdp T		7e-15
1iaq_A	166	C-H-Ras P21 Protein Mutant With Thr 35 Replaced By		7e-15
3k9n_A	166	Allosteric Modulation Of H-Ras Gtpase Length = 166		8e-15
1lf0_A	166	Crystal Structure Of Rasa59g In The Gtp-Bound Form		8e-15
2hv8_A	172	Crystal Structure Of Gtp-Bound Rab11 In Complex Wit		1e-14
1qbk_C	216	Structure Of The Karyopherin Beta2-ran Gppnhp Nucle		1e-14
1zw6_A	166	Crystal Structure Of The Gtp-Bound Form Of Rasq61g		1e-14
1xcm_A	167	Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mu		1e-14
221p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		1e-14
3i3s_R	166	Crystal Structure Of H-Ras With Thr50 Replaced By I		1e-14
1xj0_A	166	Crystal Structure Of The Gdp-Bound Form Of The Rasg		1e-14
2rgb_A	166	Crystal Structure Of H-Rasq61k-Gppnhp Length = 166		1e-14
621p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		1e-14
521p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		1e-14
1oiw_A	191	X-ray Structure Of The Small G Protein Rab11a In Co		2e-14
2x19_A	172	Crystal Structure Of Importin13 - Rangtp Complex Le		2e-14
2ew1_A	201	Crystal Structure Of Rab30 In Complex With A Gtp An		2e-14
4dxa_A	169	Co-Crystal Structure Of Rap1 In Complex With Krit1		2e-14
3icq_B	171	Karyopherin Nuclear State Length = 171		2e-14
2erx_A	172	Crystal Structure Of Diras2 In Complex With Gdp And		2e-14
3nc1_C	182	Crystal Structure Of The Crm1-Rangtp Complex Length		2e-14
2d7c_A	167	Crystal Structure Of Human Rab11 In Complex With Fi		2e-14
1zvq_A	166	Structure Of The Q61g Mutant Of Ras In The Gdp-Boun		2e-14
3sea_A	167	Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bo		2e-14
3nby_C	176	Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclea		3e-14
2gzd_A	173	Crystal Structure Of Rab11 In Complex With Rab11-Fi		3e-14
2cl0_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		3e-14
4efn_A	171	Crystal Structure Of H-Ras Q61l In Complex With Gpp		3e-14
1vg1_A	185	Gdp-bound Rab7 Length = 185		3e-14
721p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		3e-14
2rgc_A	166	Crystal Structure Of H-Rasq61v-Gppnhp Length = 166		3e-14
1nvv_Q	166	Structural Evidence For Feedback Activation By Rasg		3e-14
1x3s_A	195	Crystal Structure Of Human Rab18 In Complex With Gp		3e-14
3oes_A	201	Crystal Structure Of The Small Gtpase Rhebl1 Length		3e-14
1vg0_B	207	The Crystal Structures Of The Rep-1 Protein In Comp		3e-14
3con_A	190	Crystal Structure Of The Human Nras Gtpase Bound Wi		3e-14
2rga_A	166	Crystal Structure Of H-Rasq61i-Gppnhp Length = 166		3e-14
2rhd_A	175	Crystal Structure Of Cryptosporidium Parvum Small G		4e-14
1qg2_A	216	Canine Gdp-Ran R76e Mutant Length = 216		4e-14
3m1i_A	219	Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex		4e-14
3jza_A	175	Crystal Structure Of Human Rab1b In Complex With Th		5e-14
4i1o_A	181	Crystal Structure Of The Legionella Pneumophila Gap		5e-14
3ran_A	216	Canine Gdp-Ran Q69l Mutant Length = 216		6e-14
2f7s_A	217	The Crystal Structure Of Human Rab27b Bound To Gdp		8e-14
3law_A	207	Structure Of Gtp-Bound L129f Mutant Rab7 Length = 2		8e-14
3rab_A	169	Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169		9e-14
3gj4_A	221	Crystal Structure Of Human Rangdp-Nup153znf3 Comple		1e-13
2p5s_A	199	Rab Domain Of Human Rasef In Complex With Gdp Lengt		1e-13
2g6b_A	180	Crystal Structure Of Human Rab26 In Complex With A		1e-13
3tw8_B	181	Gef Domain Of Dennd 1b In Complex With Rab Gtpase R		1e-13
1ek0_A	170	Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 17		1e-13
1z0a_A	174	Gdp-Bound Rab2a Gtpase Length = 174		2e-13
1t91_A	207	Crystal Structure Of Human Small Gtpase Rab7(Gtp) L		3e-13
2gf9_A	189	Crystal Structure Of Human Rab3d In Complex With Gd		3e-13
3cpj_B	223	Crystal Structure Of Ypt31 In Complex With Yeast Ra		4e-13
1z0f_A	179	Gdp-Bound Rab14 Gtpase Length = 179		4e-13
2fn4_A	181	The Crystal Structure Of Human Ras-Related Protein,		5e-13
2o52_A	200	Crystal Structure Of Human Rab4b In Complex With Gd		5e-13
2y8e_A	179	Crystal Structure Of D. Melanogaster Rab6 Gtpase Bo		5e-13
2iey_A	195	Crystal Structure Of Mouse Rab27b Bound To Gdp In H		6e-13
4fmd_F	164	Espg-Rab1 Complex Structure At 3.05 A Length = 164		6e-13
4fmb_B	171	Vira-Rab1 Complex Structure Length = 171		6e-13
3tkl_A	196	Crystal Structure Of The Gtp-Bound Rab1a In Complex		7e-13
1z07_A	166	Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166		8e-13
2fol_A	191	Crystal Structure Of Human Rab1a In Complex With Gd		8e-13
4fmc_B	171	Espg-Rab1 Complex Length = 171		8e-13
2zet_A	203	Crystal Structure Of The Small Gtpase Rab27b Comple		8e-13
1huq_A	164	1.8a Crystal Structure Of The Monomeric Gtpase Rab5		8e-13
2if0_A	200	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		8e-13
2iez_A	220	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		9e-13
2wwx_A	175	Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra		1e-12
1yvd_A	169	Gppnhp-Bound Rab22 Gtpase Length = 169		1e-12
3sfv_A	181	Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan		1e-12
2atv_A	196	The Crystal Structure Of Human Rerg In The Gdp Boun		1e-12
3l0i_B	199	Complex Structure Of Sidm/drra With The Wild Type R		1e-12
2fg5_A	192	Crystal Structure Of Human Rab31 In Complex With A		2e-12
1z06_A	189	Gppnhp-Bound Rab33 Gtpase Length = 189		2e-12
2efc_B	181	Ara7-GdpATVPS9A Length = 181		2e-12
1zbd_A	203	Structural Basis Of Rab Effector Specificity: Cryst		2e-12
3bfk_A	181	Crystal Structure Of Plasmodium Falciparum Rab11a I		2e-12
3dz8_A	191	Crystal Structure Of Human Rab3b Gtpase Bound With		2e-12
1n6r_A	170	Crystal Structure Of Human Rab5a A30l Mutant Comple		2e-12
4drz_A	196	Crystal Structure Of Human Rab14 Length = 196		2e-12
1z22_A	168	Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Spac		3e-12
1ukv_Y	206	Structure Of Rabgdp-Dissociation Inhibitor In Compl		3e-12
2a5j_A	191	Crystal Structure Of Human Rab2b Length = 191		3e-12
2bcg_Y	206	Structure Of Doubly Prenylated Ypt1:gdi Complex Len		3e-12
2il1_A	192	Crystal Structure Of A Predicted Human Gtpase In Co		3e-12
1z0j_A	170	Structure Of Gtp-Bound Rab22q64l Gtpase In Complex		4e-12
1yzn_A	185	Gppnhp-Bound Ypt1p Gtpase Length = 185		4e-12
2g77_B	198	Crystal Structure Of Gyp1 Tbc Domain In Complex Wit		5e-12
1n6h_A	170	Crystal Structure Of Human Rab5a Length = 170		5e-12
1tu3_A	171	Crystal Structure Of Rab5 Complex With Rabaptin5 C-		6e-12
2gil_A	162	Structure Of The Extremely Slow Gtpase Rab6a In The		6e-12
1n6n_A	170	Crystal Structure Of Human Rab5a A30r Mutant Comple		6e-12
1yzq_A	170	Gppnhp-Bound Rab6 Gtpase Length = 170		7e-12
1n6o_A	170	Crystal Structure Of Human Rab5a A30k Mutant Comple		8e-12
1n6p_A	170	Crystal Structure Of Human Rab5a A30e Mutant Comple		8e-12
1z0d_A	167	Gdp-bound Rab5c Gtpase Length = 167		8e-12
2fe4_A	171	The Crystal Structure Of Human Neuronal Rab6b In It		9e-12
3rwm_B	185	Crystal Structure Of Ypt32 In Complex With Gppnhp L		1e-11
1n6i_A	170	Crystal Structure Of Human Rab5a A30p Mutant Comple		1e-11
4fmc_F	117	Espg-Rab1 Complex Length = 117		1e-11
3cwz_A	188	Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188		2e-11
4dkx_A	216	Crystal Structure Of The Rab 6a'(Q72l) Length = 216		3e-11
3bbp_A	211	Rab6-Gtp:gcc185 Rab Binding Domain Complex Length =		3e-11
2bmd_A	186	High Resolution Structure Of Gdp-Bound Human Rab4a		4e-11
3bc1_A	195	Crystal Structure Of The Complex Rab27a-slp2a Lengt		4e-11
3mjh_A	168	Crystal Structure Of Human Rab5a In Complex With Th		5e-11
1yu9_A	175	Gppnhp-Bound Rab4a Length = 175		6e-11
1tu4_A	171	Crystal Structure Of Rab5-Gdp Complex Length = 171		1e-10
2hei_A	179	Crystal Structure Of Human Rab5b In Complex With Gd		1e-10
2gf0_A	199	The Crystal Structure Of The Human Diras1 Gtpase In		1e-10
3tso_A	178	Structure Of The Cancer Associated Rab25 Protein In		3e-10
2oil_A	193	Crystal Structure Of Human Rab25 In Complex With Gd		4e-10
1z0k_A	172	Structure Of Gtp-Bound Rab4q67l Gtpase In Complex W		5e-10
3kkp_A	183	Crystal Structure Of M-Ras P40d In Complex With Gpp		5e-10
1x1r_A	178	Crystal Structure Of M-Ras In Complex With Gdp Leng		7e-10
4djt_A	218	Crystal Structure Of A Nuclear Gtp-Binding Protein		9e-10
1d5c_A	162	Crystal Structure Of Plasmodium Falciparum Rab6 Com		1e-09
3kko_A	183	Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX		2e-09
3pir_A	183	Crystal Structure Of M-Rasd41e In Complex With Gppn		2e-09
3rap_R	167	The Small G Protein Rap2 In A Non Catalytic Complex		1e-08
2hup_A	201	Crystal Structure Of Human Rab43 In Complex With Gd		2e-08
3cbq_A	195	Crystal Structure Of The Human Rem2 Gtpase With Bou		5e-07
2cjw_B	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		5e-07
2cjw_A	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		6e-07
2g3y_A	211	Crystal Structure Of The Human Small Gtpase Gem Len		8e-07
2hxs_A	178	Crystal Structure Of Rab28a Gtpase In The Inactive		3e-06
3q85_A	169	Crystal Structure Of Rem2 G-Domain -Gtp Analog Comp		8e-06
2ht6_A	174	Crystal Structure Of Human Gem G-Domain Bound To Gd		1e-05
2dpx_A	174	Crystal Structure Of Human Rad Gtpase Length = 174		2e-05
4aii_A	180	Crystal Structure Of The Rat Rem2 Gtpase - G Domain		2e-05
2nzj_A	175	The Crystal Structure Of Rem1 In Complex With Gdp L		2e-05
2gjs_A	176	The Crystal Structure Of Human Rrad In Complex With		4e-05
3clv_A	208	Crystal Structure Of Rab5a From Plasmodium Falcipar		8e-05
3q72_A	166	Crystal Structure Of Rad G-Domain-Gtp Analog Comple		9e-05
3d6t_B	171	Structure Of The Roc Domain From The Parkinson's Di		5e-04
2zej_A	184	Structure Of The Roc Domain From The Parkinson's Di		6e-04
2yc2_C	208	Intraflagellar Transport Complex 25-27 From Chlamyd		8e-04

>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With Arfaptin (P21) Length = 192

Iteration: 1
 Score =  221 bits (564), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 102/188 (54%), Positives = 134/188 (71%), Gaps = 5/188 (2%)
Query: 22  KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
           +A+K   VGDG VGKTCLLI++T N FP +Y+PTVFDNY   + VD K  ++ LWDTAGQ
Sbjct: 2   QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 82  EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
           EDY+RLRP+SYP TD FL+CFS+ S +S+EN+ +KWYPE++HHCP  PIILVGTK DLR 
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 121
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSA----- 196
           +  TI+K K  ++  ++  QG  M ++I A +YLECSA    GL  VF  A+R+      
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPP 181
Query: 197 VKKQDKSC 204
           VKK+ + C
Sbjct: 182 VKKRKRKC 189

>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1 In Complex With Rac1 Length = 184

Iteration: 1
 Score =  221 bits (563), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 99/177 (55%), Positives = 130/177 (73%)
Query: 22  KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
           +A+K   VGDG VGKTCLLI++T N FP +Y+PTVFDNY   + VD K  ++ LWDTAGQ
Sbjct: 2   QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 82  EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
           EDY+RLRP+SYP TD FL+CFS+ S +S+EN+ +KWYPE++HHCP  PIILVGTK DLR 
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 121
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVK 198
           +  TI+K K  ++  ++  QG  M ++I A +YLECSA    GL  VF  A+R+ +K
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLK 178

>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1. Length = 196

Iteration: 1
 Score =  221 bits (563), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 99/184 (53%), Positives = 132/184 (71%)
Query: 14  DVKSKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDV 73
           +V  +   +A+K   VGDG VGKTCLLI++T N FP +Y+PTVFDNY   + VD K  ++
Sbjct: 13  EVLFQGTMQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNL 72
Query: 74  TLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILV 133
            LWDTAGQEDY+RLRP+SYP TD FL+CFS+ S +S+EN+ +KWYPE++HHCP  PIILV
Sbjct: 73  GLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILV 132
Query: 134 GTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAV 193
           GTK DLR +  TI+K K  ++  ++  QG  M ++I A +YLECSA    GL  VF  A+
Sbjct: 133 GTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 192
Query: 194 RSAV 197
           R+ +
Sbjct: 193 RAVL 196

>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1 Length = 204

Iteration: 1
 Score =  220 bits (560), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 98/176 (55%), Positives = 129/176 (73%)
Query: 22  KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
           +A+K   VGDG VGKTCLLI++T N FP +Y+PTVFDNY   + VD K  ++ LWDTAGQ
Sbjct: 29  QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 88
Query: 82  EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
           EDY+RLRP+SYP TD FL+CFS+ S +S+EN+ +KWYPE++HHCP  PIILVGTK DLR 
Sbjct: 89  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 148
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV 197
           +  TI+K K  ++  ++  QG  M ++I A +YLECSA    GL  VF  A+R+ +
Sbjct: 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 204

>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta 2 Length = 178

Iteration: 1
 Score =  219 bits (559), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 98/176 (55%), Positives = 129/176 (73%)
Query: 22  KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
           +A+K   VGDG VGKTCLLI++T N FP +Y+PTVFDNY   + VD K  ++ LWDTAGQ
Sbjct: 2   QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 82  EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
           EDY+RLRP+SYP TD FL+CFS+ S +S+EN+ +KWYPE++HHCP  PIILVGTK DLR 
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 121
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV 197
           +  TI+K K  ++  ++  QG  M ++I A +YLECSA    GL  VF  A+R+ +
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177

>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine Nucleotide Exchange Region Of Tiam1 Length = 177

Iteration: 1
 Score =  219 bits (559), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 98/176 (55%), Positives = 129/176 (73%)
Query: 22  KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
           +A+K   VGDG VGKTCLLI++T N FP +Y+PTVFDNY   + VD K  ++ LWDTAGQ
Sbjct: 2   QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 82  EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
           EDY+RLRP+SYP TD FL+CFS+ S +S+EN+ +KWYPE++HHCP  PIILVGTK DLR 
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 121
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV 197
           +  TI+K K  ++  ++  QG  M ++I A +YLECSA    GL  VF  A+R+ +
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177

>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The Vav1 Exchange Factor Length = 184

Iteration: 1
 Score =  219 bits (558), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 98/176 (55%), Positives = 129/176 (73%)
Query: 22  KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
           +A+K   VGDG VGKTCLLI++T N FP +Y+PTVFDNY   + VD K  ++ LWDTAGQ
Sbjct: 2   QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 82  EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
           EDY+RLRP+SYP TD FL+CFS+ S +S+EN+ +KWYPE++HHCP  PIILVGTK DLR 
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 121
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV 197
           +  TI+K K  ++  ++  QG  M ++I A +YLECSA    GL  VF  A+R+ +
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177

>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of The Pseudomonas Aeruginosa Exos Toxin And Human Rac Length = 176

Iteration: 1
 Score =  219 bits (558), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 98/174 (56%), Positives = 128/174 (73%)
Query: 22  KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
           +A+K   VGDG VGKTCLLI++T N FP +Y+PTVFDNY   + VD K  ++ LWDTAGQ
Sbjct: 2   QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 82  EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
           EDY+RLRP+SYP TD FL+CFS+ S +S+EN+ +KWYPE++HHCP  PIILVGTK DLR 
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 121
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRS 195
           +  TI+K K  ++  ++  QG  M ++I A +YLECSA    GL  VF  A+R+
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRA 175

>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex Length = 192

Iteration: 1
 Score =  219 bits (557), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 98/188 (52%), Positives = 136/188 (72%), Gaps = 5/188 (2%)
Query: 22  KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
           +A+K   VGDG VGKTCLLI++T N FP +Y+PTVFDNY   + VD+K  ++ LWDTAGQ
Sbjct: 2   QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQ 61
Query: 82  EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
           EDY+RLRP+SYP TD FL+CFS+ S +SYEN+ +KW+PE++HHCP  PIILVGTK DLR 
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRD 121
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV---- 197
           +  TI+K K  ++  ++  QG  + ++I + +YLECSA    GL  VF  A+R+ +    
Sbjct: 122 DKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCPQP 181
Query: 198 -KKQDKSC 204
            ++Q ++C
Sbjct: 182 TRQQKRAC 189

>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With Arfaptin Length = 192

Iteration: 1
 Score =  219 bits (557), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 101/188 (53%), Positives = 133/188 (70%), Gaps = 5/188 (2%)
Query: 22  KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
           +A+K   VGDG VGKTCLLI++T N FP +Y+PTVFDNY   + VD K  ++ LWDTAG 
Sbjct: 2   QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGL 61
Query: 82  EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
           EDY+RLRP+SYP TD FL+CFS+ S +S+EN+ +KWYPE++HHCP  PIILVGTK DLR 
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 121
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSA----- 196
           +  TI+K K  ++  ++  QG  M ++I A +YLECSA    GL  VF  A+R+      
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPP 181
Query: 197 VKKQDKSC 204
           VKK+ + C
Sbjct: 182 VKKRKRKC 189

>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX Length = 192

Iteration: 1
 Score =  218 bits (556), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 101/188 (53%), Positives = 133/188 (70%), Gaps = 5/188 (2%)
Query: 22  KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
           +A+K   VGDG VGKTCLLI++T N FP +Y+PTVFDNY   + VD K  ++ LWDTAG 
Sbjct: 2   QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGL 61
Query: 82  EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
           EDY+RLRP+SYP TD FL+CFS+ S +S+EN+ +KWYPE++HHCP  PIILVGTK DLR 
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 121
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSA----- 196
           +  TI+K K  ++  ++  QG  M ++I A +YLECSA    GL  VF  A+R+      
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPP 181
Query: 197 VKKQDKSC 204
           VKK+ + C
Sbjct: 182 VKKRKRKC 189

>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex With Rac1 (T17n Mutant) Length = 184

Iteration: 1
 Score =  218 bits (556), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 98/179 (54%), Positives = 129/179 (72%)
Query: 19  SVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDT 78
           S  +A+K   VGDG VGK CLLI++T N FP +Y+PTVFDNY   + VD K  ++ LWDT
Sbjct: 6   SGMQAIKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDT 65
Query: 79  AGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKAD 138
           AGQEDY+RLRP+SYP TD FL+CFS+ S +S+EN+ +KWYPE++HHCP  PIILVGTK D
Sbjct: 66  AGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 125
Query: 139 LRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV 197
           LR +  TI+K K  ++  ++  QG  M ++I A +YLECSA    GL  VF  A+R+ +
Sbjct: 126 LRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 184

>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation Length = 192

Iteration: 1
 Score =  218 bits (554), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 101/188 (53%), Positives = 133/188 (70%), Gaps = 5/188 (2%)
Query: 22  KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
           +A+K   VGDG VGKTCLLI++T N FP +Y+PTVFDNY   + VD K  ++ LWDTAGQ
Sbjct: 2   QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 82  EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
           EDY+RLRP+SYP TD  L+CFS+ S +S+EN+ +KWYPE++HHCP  PIILVGTK DLR 
Sbjct: 62  EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 121
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSA----- 196
           +  TI+K K  ++  ++  QG  M ++I A +YLECSA    GL  VF  A+R+      
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPP 181
Query: 197 VKKQDKSC 204
           VKK+ + C
Sbjct: 182 VKKRKRKC 189

>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant Length = 204

Iteration: 1
 Score =  218 bits (554), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 97/176 (55%), Positives = 128/176 (72%)
Query: 22  KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
           +A+K   VGDG VGKTCLLI++T N  P +Y+PTVFDNY   + VD K  ++ LWDTAGQ
Sbjct: 29  QAIKCVVVGDGAVGKTCLLISYTTNALPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 88
Query: 82  EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
           EDY+RLRP+SYP TD FL+CFS+ S +S+EN+ +KWYPE++HHCP  PIILVGTK DLR 
Sbjct: 89  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 148
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV 197
           +  TI+K K  ++  ++  QG  M ++I A +YLECSA    GL  VF  A+R+ +
Sbjct: 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 204

>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of Gpp(Nh)p. Length = 180

Iteration: 1
 Score =  217 bits (552), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 95/176 (53%), Positives = 129/176 (73%)
Query: 22  KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
           +A+K   VGDG VGKTCLLI++T N FP +Y+PTVFDNY   + VD K  ++ LWDTAGQ
Sbjct: 3   QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 62
Query: 82  EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
           EDY+RLRP+SYP TD FL+CFS+ S +S+EN+ +KWYPE++HHCP  PI+LVGTK DLR 
Sbjct: 63  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLRD 122
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV 197
           +  TI++ +  ++  ++  QG  M R+I + +YLECSA    GL  VF  A+R+ +
Sbjct: 123 DKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVL 178

>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant Length = 204

Iteration: 1
 Score =  217 bits (552), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 97/176 (55%), Positives = 128/176 (72%)
Query: 22  KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
           +A+K   VGDG VGKTCLLI++T N FP +Y+PTVFDNY   + VD K  ++ LWDTAG 
Sbjct: 29  QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGL 88
Query: 82  EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
           EDY+RLRP+SYP TD FL+CFS+ S +S+EN+ +KWYPE++HHCP  PIILVGTK DLR 
Sbjct: 89  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 148
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV 197
           +  TI+K K  ++  ++  QG  M ++I A +YLECSA    GL  VF  A+R+ +
Sbjct: 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 204

>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With Gdp And Chloride Length = 179

Iteration: 1
 Score =  217 bits (552), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 95/176 (53%), Positives = 129/176 (73%)
Query: 22  KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
           +A+K   VGDG VGKTCLLI++T N FP +Y+PTVFDNY   + VD K  ++ LWDTAGQ
Sbjct: 3   QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 62
Query: 82  EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
           EDY+RLRP+SYP TD FL+CFS+ S +S+EN+ +KWYPE++HHCP  PI+LVGTK DLR 
Sbjct: 63  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLRD 122
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV 197
           +  TI++ +  ++  ++  QG  M R+I + +YLECSA    GL  VF  A+R+ +
Sbjct: 123 DKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVL 178

>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp Length = 192

Iteration: 1
 Score =  216 bits (551), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 95/176 (53%), Positives = 129/176 (73%)
Query: 22  KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
           +A+K   VGDG VGKTCLLI++T N FP +Y+PTVFDNY   + VD K  ++ LWDTAGQ
Sbjct: 2   QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 82  EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
           EDY+RLRP+SYP TD FL+CFS+ S +S+EN+ +KWYPE++HHCP  PI+LVGTK DLR 
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLRD 121
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV 197
           +  TI++ +  ++  ++  QG  M R+I + +YLECSA    GL  VF  A+R+ +
Sbjct: 122 DKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVL 177

>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1 Length = 180

Iteration: 1
 Score =  216 bits (551), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 97/176 (55%), Positives = 128/176 (72%)
Query: 22  KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
           +A+K   VGDG VGKTCLLI++T N FP +Y+PTVFDNY   + VD K  ++ LWDTAG 
Sbjct: 5   QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGL 64
Query: 82  EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
           EDY+RLRP+SYP TD FL+CFS+ S +S+EN+ +KWYPE++HHCP  PIILVGTK DLR 
Sbjct: 65  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 124
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV 197
           +  TI+K K  ++  ++  QG  M ++I A +YLECSA    GL  VF  A+R+ +
Sbjct: 125 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 180

>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant Length = 187

Iteration: 1
 Score =  216 bits (550), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 97/176 (55%), Positives = 128/176 (72%)
Query: 22  KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
           +A+K   VGDG VGKTCLLI++T N F  +Y+PTVFDNY   + VD K  ++ LWDTAGQ
Sbjct: 12  QAIKCVVVGDGAVGKTCLLISYTTNAFSGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 71
Query: 82  EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
           EDY+RLRP+SYP TD FL+CFS+ S +S+EN+ +KWYPE++HHCP  PIILVGTK DLR 
Sbjct: 72  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 131
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV 197
           +  TI+K K  ++  ++  QG  M ++I A +YLECSA    GL  VF  A+R+ +
Sbjct: 132 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 187

>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1 Length = 188

Iteration: 1
 Score =  216 bits (550), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 97/178 (54%), Positives = 129/178 (72%)
Query: 20  VHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTA 79
           + +A+K   VGDG VGKTCLLI++T N FP +Y+PTVFDNY   + VD K  ++ LWDTA
Sbjct: 4   LMQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTA 63
Query: 80  GQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADL 139
           GQEDY+RLRP+SYP TD  L+CFS+ S +S+EN+ +KWYPE++HHCP  PIILVGTK DL
Sbjct: 64  GQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDL 123
Query: 140 RSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV 197
           R +  TI+K K  ++  ++  QG  M ++I A +YLECSA    GL  VF  A+R+ +
Sbjct: 124 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 181

>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase And Gtpase Activating Protein Sptp Bound To Rac1 Length = 184

Iteration: 1
 Score =  215 bits (548), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 97/176 (55%), Positives = 128/176 (72%)
Query: 22  KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
           +A+K   VGDG VGKTCLLI++T N FP +Y+PTVFDNY   + VD K  ++ LWDTAGQ
Sbjct: 2   QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 82  EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
           EDY+RLRP+SYP TD  L+CFS+ S +S+EN+ +KWYPE++HHCP  PIILVGTK DLR 
Sbjct: 62  EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 121
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV 197
           +  TI+K K  ++  ++  QG  M ++I A +YLECSA    GL  VF  A+R+ +
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177

>pdb|1MH1|A Chain A, Small G-Protein Length = 186

Iteration: 1
 Score =  215 bits (548), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 97/176 (55%), Positives = 128/176 (72%)
Query: 22  KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
           +A+K   VGDG VGKTCLLI++T N FP +Y+PTVFDNY   + VD K  ++ LWDTAGQ
Sbjct: 4   QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 63
Query: 82  EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
           EDY+RLRP+SYP TD  L+CFS+ S +S+EN+ +KWYPE++HHCP  PIILVGTK DLR 
Sbjct: 64  EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 123
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV 197
           +  TI+K K  ++  ++  QG  M ++I A +YLECSA    GL  VF  A+R+ +
Sbjct: 124 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 179

>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs Length = 184

Iteration: 1
 Score =  213 bits (543), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 95/176 (53%), Positives = 129/176 (73%)
Query: 22  KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
           +A+K   VGD  VGKTCLLI++T N FP +Y+PTVFDNY   + VD+K  ++ LWDTAGQ
Sbjct: 9   QAIKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQ 68
Query: 82  EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
           EDY+RLRP+SYP TD FL+CFS+ S +SYEN+ +KW+PE++HHCP  PIILVGTK DLR 
Sbjct: 69  EDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRD 128
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV 197
           +  TI+K K  ++  ++  QG  + ++I + +YLECSA    GL  VF  A+R+ +
Sbjct: 129 DKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVL 184

>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp Length = 185

Iteration: 1
 Score =  213 bits (543), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 95/176 (53%), Positives = 129/176 (73%)
Query: 22  KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
           +A+K   VGD  VGKTCLLI++T N FP +Y+PTVFDNY   + VD+K  ++ LWDTAGQ
Sbjct: 8   QAIKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQ 67
Query: 82  EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
           EDY+RLRP+SYP TD FL+CFS+ S +SYEN+ +KW+PE++HHCP  PIILVGTK DLR 
Sbjct: 68  EDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRD 127
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV 197
           +  TI+K K  ++  ++  QG  + ++I + +YLECSA    GL  VF  A+R+ +
Sbjct: 128 DKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVL 183

>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450m Mutant Length = 332

Iteration: 1
 Score =  211 bits (537), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 94/180 (52%), Positives = 128/180 (71%)
Query: 18  KSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWD 77
           ++  + +K   VGDG VGKTCLLI++T N FP +Y+PTVFDNY   + VD K  ++ LWD
Sbjct: 150 EAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWD 209
Query: 78  TAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKA 137
           TAG EDY+RLRP+SYP TD FL+CFS+ S +S+ ++ +KWYPE++HHCP  PIILVGTK 
Sbjct: 210 TAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKL 269
Query: 138 DLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV 197
           DLR +  TI+K K  ++  ++  QG  M ++I A +YLECSA    GL  VF  A+R+ +
Sbjct: 270 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 329

>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450a Mutant Length = 332

Iteration: 1
 Score =  211 bits (537), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 94/180 (52%), Positives = 128/180 (71%)
Query: 18  KSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWD 77
           ++  + +K   VGDG VGKTCLLI++T N FP +Y+PTVFDNY   + VD K  ++ LWD
Sbjct: 150 EAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWD 209
Query: 78  TAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKA 137
           TAG EDY+RLRP+SYP TD FL+CFS+ S +S+ ++ +KWYPE++HHCP  PIILVGTK 
Sbjct: 210 TAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKL 269
Query: 138 DLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV 197
           DLR +  TI+K K  ++  ++  QG  M ++I A +YLECSA    GL  VF  A+R+ +
Sbjct: 270 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 329

>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2 Wildtype Length = 332

Iteration: 1
 Score =  211 bits (536), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 94/180 (52%), Positives = 128/180 (71%)
Query: 18  KSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWD 77
           ++  + +K   VGDG VGKTCLLI++T N FP +Y+PTVFDNY   + VD K  ++ LWD
Sbjct: 150 EAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWD 209
Query: 78  TAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKA 137
           TAG EDY+RLRP+SYP TD FL+CFS+ S +S+ ++ +KWYPE++HHCP  PIILVGTK 
Sbjct: 210 TAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKL 269
Query: 138 DLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV 197
           DLR +  TI+K K  ++  ++  QG  M ++I A +YLECSA    GL  VF  A+R+ +
Sbjct: 270 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 329

>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A Self-Activating Gtpase Length = 203

Iteration: 1
 Score =  208 bits (529), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 98/195 (50%), Positives = 129/195 (66%), Gaps = 19/195 (9%)
Query: 22  KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
           +A+K   VGDG VGKTCLLI++T N FP +Y+PTVFDNY   + VD K  ++ LWDTAGQ
Sbjct: 4   QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 63
Query: 82  EDYERLRPMSYPNT-------------------DCFLLCFSIGSTSSYENILSKWYPELK 122
           EDY+RLRP+SYP T                   D FL+CFS+ S +S+EN+ +KWYPE++
Sbjct: 64  EDYDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEVR 123
Query: 123 HHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLN 182
           HHCP  PIILVGTK DLR +  TI+K K  ++  ++  QG  M ++I A +YLECSA   
Sbjct: 124 HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 183
Query: 183 EGLDQVFIAAVRSAV 197
            GL  VF  A+R+ +
Sbjct: 184 RGLKTVFDEAIRAVL 198

>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures Length = 194

Iteration: 1
 Score =  206 bits (525), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 93/183 (50%), Positives = 129/183 (70%)
Query: 19  SVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDT 78
           S  + +K   VGDG VGKTCLLI++T NKFP++YVPTVFDNY  T+ +  + Y + L+DT
Sbjct: 6   SAMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDT 65
Query: 79  AGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKAD 138
           AGQEDY+RLRP+SYP TD FL+CFS+ S SS+EN+  KW PE+ HHCPK P +LVGT+ D
Sbjct: 66  AGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQID 125
Query: 139 LRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVK 198
           LR +  TI+K    +   ++    +K+ R +KA +Y+ECSA   +GL  VF  A+ +A++
Sbjct: 126 LRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 185
Query: 199 KQD 201
             +
Sbjct: 186 PPE 188

>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex Length = 180

Iteration: 1
 Score =  206 bits (524), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 97/181 (53%), Positives = 128/181 (70%), Gaps = 4/181 (2%)
Query: 19  SVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDT 78
           S  + +K  TVGDG VGKTC+LI++T N FPTDYVPTVFDN+   + VD  T ++ LWDT
Sbjct: 2   STARFIKCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDT 61
Query: 79  AGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKAD 138
           AGQEDY RLRP+SY   D FLL FS+ S +SYENI  KW PELKH+ P +PI+LVGTK D
Sbjct: 62  AGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELKHYAPGIPIVLVGTKLD 121
Query: 139 LRSENKTI-DKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV 197
           LR + + + D   AA    ++T+QG+++R+ I A  YLECS+K  + +  VF  A+R A+
Sbjct: 122 LRDDKQFLKDHPGAAS---ITTAQGEELRKMIGAVRYLECSSKTQQNVKAVFDTAIRVAL 178
Query: 198 K 198
           +
Sbjct: 179 R 179

>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain Sopb In Complex With Cdc42 Length = 193

Iteration: 1
 Score =  205 bits (522), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 92/180 (51%), Positives = 128/180 (71%)
Query: 22  KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
           + +K   VGDG VGKTCLLI++T NKFP++YVPTVFDNY  T+ +  + Y + L+DTAGQ
Sbjct: 12  QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 71
Query: 82  EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
           EDY+RLRP+SYP TD FL+CFS+ S SS+EN+  KW PE+ HHCPK P +LVGT+ DLR 
Sbjct: 72  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 131
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQD 201
           +  TI+K    +   ++    +K+ R +KA +Y+ECSA   +GL  VF  A+ +A++  +
Sbjct: 132 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPE 191

>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The Crib Domain Of Human P21-Activated Kinase 6 (Pak6) Length = 192

Iteration: 1
 Score =  205 bits (521), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 92/180 (51%), Positives = 128/180 (71%)
Query: 22  KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
           + +K   VGDG VGKTCLLI++T NKFP++YVPTVFDNY  T+ +  + Y + L+DTAGQ
Sbjct: 3   QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 62
Query: 82  EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
           EDY+RLRP+SYP TD FL+CFS+ S SS+EN+  KW PE+ HHCPK P +LVGT+ DLR 
Sbjct: 63  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 122
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQD 201
           +  TI+K    +   ++    +K+ R +KA +Y+ECSA   +GL  VF  A+ +A++  +
Sbjct: 123 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPE 182

>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX. Length = 191

Iteration: 1
 Score =  205 bits (521), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 92/180 (51%), Positives = 128/180 (71%)
Query: 22  KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
           + +K   VGDG VGKTCLLI++T NKFP++YVPTVFDNY  T+ +  + Y + L+DTAGQ
Sbjct: 2   QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 82  EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
           EDY+RLRP+SYP TD FL+CFS+ S SS+EN+  KW PE+ HHCPK P +LVGT+ DLR 
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 121
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQD 201
           +  TI+K    +   ++    +K+ R +KA +Y+ECSA   +GL  VF  A+ +A++  +
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPE 181

>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN Complex With The Placental Isoform Of Human Cdc42 Length = 188

Iteration: 1
 Score =  205 bits (521), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 92/180 (51%), Positives = 128/180 (71%)
Query: 22  KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
           + +K   VGDG VGKTCLLI++T NKFP++YVPTVFDNY  T+ +  + Y + L+DTAGQ
Sbjct: 2   QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 82  EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
           EDY+RLRP+SYP TD FL+CFS+ S SS+EN+  KW PE+ HHCPK P +LVGT+ DLR 
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 121
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQD 201
           +  TI+K    +   ++    +K+ R +KA +Y+ECSA   +GL  VF  A+ +A++  +
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPE 181

>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of The Salmonella Typhimurium Sope Toxin And Human Cdc42 Length = 180

Iteration: 1
 Score =  205 bits (521), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 92/177 (51%), Positives = 127/177 (71%)
Query: 22  KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
           + +K   VGDG VGKTCLLI++T NKFP++YVPTVFDNY  T+ +  + Y + L+DTAGQ
Sbjct: 4   QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 63
Query: 82  EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
           EDY+RLRP+SYP TD FL+CFS+ S SS+EN+  KW PE+ HHCPK P +LVGT+ DLR 
Sbjct: 64  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 123
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVK 198
           +  TI+K    +   ++    +K+ R +KA +Y+ECSA   +GL  VF  A+ +A++
Sbjct: 124 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 180

>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex Length = 182

Iteration: 1
 Score =  205 bits (521), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 92/177 (51%), Positives = 127/177 (71%)
Query: 22  KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
           + +K   VGDG VGKTCLLI++T NKFP++YVPTVFDNY  T+ +  + Y + L+DTAGQ
Sbjct: 6   QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 65
Query: 82  EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
           EDY+RLRP+SYP TD FL+CFS+ S SS+EN+  KW PE+ HHCPK P +LVGT+ DLR 
Sbjct: 66  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 125
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVK 198
           +  TI+K    +   ++    +K+ R +KA +Y+ECSA   +GL  VF  A+ +A++
Sbjct: 126 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 182

>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex Length = 194

Iteration: 1
 Score =  205 bits (521), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 92/180 (51%), Positives = 128/180 (71%)
Query: 22  KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
           + +K   VGDG VGKTCLLI++T NKFP++YVPTVFDNY  T+ +  + Y + L+DTAGQ
Sbjct: 5   QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 64
Query: 82  EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
           EDY+RLRP+SYP TD FL+CFS+ S SS+EN+  KW PE+ HHCPK P +LVGT+ DLR 
Sbjct: 65  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 124
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQD 201
           +  TI+K    +   ++    +K+ R +KA +Y+ECSA   +GL  VF  A+ +A++  +
Sbjct: 125 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPE 184

>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase Binding Domain Of Wasp Length = 179

Iteration: 1
 Score =  204 bits (520), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 92/177 (51%), Positives = 127/177 (71%)
Query: 22  KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
           + +K   VGDG VGKTCLLI++T NKFP++YVPTVFDNY  T+ +  + Y + L+DTAGQ
Sbjct: 2   QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 82  EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
           EDY+RLRP+SYP TD FL+CFS+ S SS+EN+  KW PE+ HHCPK P +LVGT+ DLR 
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 121
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVK 198
           +  TI+K    +   ++    +K+ R +KA +Y+ECSA   +GL  VF  A+ +A++
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 178

>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is Required Length = 189

Iteration: 1
 Score =  204 bits (520), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 92/180 (51%), Positives = 128/180 (71%)
Query: 22  KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
           + +K   VGDG VGKTCLLI++T NKFP++YVPTVFDNY  T+ +  + Y + L+DTAGQ
Sbjct: 2   QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 82  EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
           EDY+RLRP+SYP TD FL+CFS+ S SS+EN+  KW PE+ HHCPK P +LVGT+ DLR 
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 121
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQD 201
           +  TI+K    +   ++    +K+ R +KA +Y+ECSA   +GL  VF  A+ +A++  +
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPE 181

>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide Derived From P-21 Activated Kinase, Nmr, 20 Structures Length = 178

Iteration: 1
 Score =  204 bits (520), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 92/177 (51%), Positives = 127/177 (71%)
Query: 22  KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
           + +K   VGDG VGKTCLLI++T NKFP++YVPTVFDNY  T+ +  + Y + L+DTAGQ
Sbjct: 2   QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 82  EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
           EDY+RLRP+SYP TD FL+CFS+ S SS+EN+  KW PE+ HHCPK P +LVGT+ DLR 
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 121
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVK 198
           +  TI+K    +   ++    +K+ R +KA +Y+ECSA   +GL  VF  A+ +A++
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 178

>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In Complex With The Multifunctional Regulator Rhogdi Length = 191

Iteration: 1
 Score =  204 bits (520), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 92/180 (51%), Positives = 128/180 (71%)
Query: 22  KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
           + +K   VGDG VGKTCLLI++T NKFP++YVPTVFDNY  T+ +  + Y + L+DTAGQ
Sbjct: 5   QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 64
Query: 82  EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
           EDY+RLRP+SYP TD FL+CFS+ S SS+EN+  KW PE+ HHCPK P +LVGT+ DLR 
Sbjct: 65  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 124
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQD 201
           +  TI+K    +   ++    +K+ R +KA +Y+ECSA   +GL  VF  A+ +A++  +
Sbjct: 125 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPE 184

>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42. Length = 190

Iteration: 1
 Score =  204 bits (520), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 92/180 (51%), Positives = 128/180 (71%)
Query: 22  KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
           + +K   VGDG VGKTCLLI++T NKFP++YVPTVFDNY  T+ +  + Y + L+DTAGQ
Sbjct: 4   QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 63
Query: 82  EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
           EDY+RLRP+SYP TD FL+CFS+ S SS+EN+  KW PE+ HHCPK P +LVGT+ DLR 
Sbjct: 64  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 123
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQD 201
           +  TI+K    +   ++    +K+ R +KA +Y+ECSA   +GL  VF  A+ +A++  +
Sbjct: 124 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPE 183

>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex Length = 190

Iteration: 1
 Score =  204 bits (520), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 92/180 (51%), Positives = 128/180 (71%)
Query: 22  KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
           + +K   VGDG VGKTCLLI++T NKFP++YVPTVFDNY  T+ +  + Y + L+DTAGQ
Sbjct: 2   QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVXIGGEPYTLGLFDTAGQ 61
Query: 82  EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
           EDY+RLRP+SYP TD FL+CFS+ S SS+EN+  KW PE+ HHCPK P +LVGT+ DLR 
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 121
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQD 201
           +  TI+K    +   ++    +K+ R +KA +Y+ECSA   +GL  VF  A+ +A++  +
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPE 181

>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With Cdc42-Gmppnp Length = 178

Iteration: 1
 Score =  204 bits (520), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 92/177 (51%), Positives = 126/177 (71%)
Query: 22  KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
           + +K   VGDG VGKTCLLI++T NKFP++YVPTVFDNY  T+ +  + Y + L+DTAGQ
Sbjct: 2   QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 82  EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
           EDY+RLRP+SYP TD FL+CFS+ S SS+EN+  KW PE+ HHCPK P +LVGT+ DLR 
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 121
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVK 198
           +  TI+K    +   ++    +K+ R +KA +Y+ECSA    GL  VF  A+ +A++
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAILAALE 178

>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens) Length = 177

Iteration: 1
 Score =  204 bits (519), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 92/176 (52%), Positives = 125/176 (71%)
Query: 22  KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
           + +K   VGDG VGKTCLLI++T NKFP++YVPTVFDNY  T+ +  + Y + L+DTAGQ
Sbjct: 2   QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 82  EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
           EDY+RLRP+SYP TD FL+CFS+ S SS+EN+  KW PE+ HHCPK P +LVGT+ DLR 
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 121
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV 197
           +  TI+K    +   ++    +K+ R +KA +Y+ECSA    GL  VF  A+ +A+
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAILAAL 177

>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex With Cdc42 (T17n Mutant) Length = 195

Iteration: 1
 Score =  204 bits (518), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 91/180 (50%), Positives = 127/180 (70%)
Query: 22  KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
           + +K   VGDG VGK CLLI++T NKFP++YVPTVFDNY  T+ +  + Y + L+DTAGQ
Sbjct: 9   QTIKCVVVGDGAVGKNCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 68
Query: 82  EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
           EDY+RLRP+SYP TD FL+CFS+ S SS+EN+  KW PE+ HHCPK P +LVGT+ DLR 
Sbjct: 69  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 128
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQD 201
           +  TI+K    +   ++    +K+ R +KA +Y+ECSA   +GL  VF  A+ +A++  +
Sbjct: 129 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPE 188

>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42 And Nucleotide Exchange Domains Of Intersectin Length = 178

Iteration: 1
 Score =  203 bits (516), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 92/177 (51%), Positives = 126/177 (71%)
Query: 22  KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
           + +K   VGDG VGKTCLLI++T NKFP++YVPTVFDNY  T+ +  + Y + L DTAGQ
Sbjct: 2   QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLRDTAGQ 61
Query: 82  EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
           EDY+RLRP+SYP TD FL+CFS+ S SS+EN+  KW PE+ HHCPK P +LVGT+ DLR 
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 121
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVK 198
           +  TI+K    +   ++    +K+ R +KA +Y+ECSA   +GL  VF  A+ +A++
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 178

>pdb|2KB0|A Chain A, Cdc42(T35a) Length = 178

Iteration: 1
 Score =  203 bits (516), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 91/177 (51%), Positives = 126/177 (71%)
Query: 22  KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
           + +K   VGDG VGKTCLLI++T NKFP++YVP VFDNY  T+ +  + Y + L+DTAGQ
Sbjct: 2   QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPAVFDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 82  EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
           EDY+RLRP+SYP TD FL+CFS+ S SS+EN+  KW PE+ HHCPK P +LVGT+ DLR 
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 121
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVK 198
           +  TI+K    +   ++    +K+ R +KA +Y+ECSA   +GL  VF  A+ +A++
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 178

>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs Length = 178

Iteration: 1
 Score =  202 bits (514), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 91/177 (51%), Positives = 126/177 (71%)
Query: 22  KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
           + +K   VGDG VGKTCLLI++T NK P++YVPTVFDNY  T+ +  + Y + L+DTAGQ
Sbjct: 2   QTIKCVVVGDGAVGKTCLLISYTTNKLPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 82  EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
           EDY+RLRP+SYP TD FL+CFS+ S SS+EN+  KW PE+ HHCPK P +LVGT+ DLR 
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 121
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVK 198
           +  TI+K    +   ++    +K+ R +KA +Y+ECSA   +GL  VF  A+ +A++
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 178

>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding Domain Of The Cell Polarity Protein, Par6 Length = 195

Iteration: 1
 Score =  202 bits (513), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 91/180 (50%), Positives = 127/180 (70%)
Query: 22  KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
           + +K   VGDG VGKTCLLI++T NKFP++YVPTVFDNY  T+ +  + Y + L+DTAG 
Sbjct: 6   QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGL 65
Query: 82  EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
           EDY+RLRP+SYP TD FL+CFS+ S SS+EN+  KW PE+ HHCPK P +LVGT+ DLR 
Sbjct: 66  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 125
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQD 201
           +  TI+K    +   ++    +K+ R +KA +Y+ECSA   +GL  VF  A+ +A++  +
Sbjct: 126 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPE 185

>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex Length = 184

Iteration: 1
 Score =  202 bits (513), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 91/180 (50%), Positives = 127/180 (70%)
Query: 22  KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
           + +K   VGDG VGKTCLLI++T NKFP++YVPTVFDNY  T+ +  + Y + L+DTAG 
Sbjct: 2   QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGL 61
Query: 82  EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
           EDY+RLRP+SYP TD FL+CFS+ S SS+EN+  KW PE+ HHCPK P +LVGT+ DLR 
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 121
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQD 201
           +  TI+K    +   ++    +K+ R +KA +Y+ECSA   +GL  VF  A+ +A++  +
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPE 181

>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9: The First Ras Superfamily Gtpase From The Plant Kingdom Length = 212

Iteration: 1
 Score =  202 bits (513), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 91/180 (50%), Positives = 128/180 (71%), Gaps = 4/180 (2%)
Query: 19  SVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDT 78
           SV K +K  TVGDG VGKTC+LI +T NKFPTDY+PTVFDN+   + VD +  ++ LWDT
Sbjct: 5   SVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDT 64
Query: 79  AGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKAD 138
           AGQEDY RLRP+SY   D F+L FS+ S +SYEN+L KW PEL+   P VPI+LVGTK D
Sbjct: 65  AGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLD 124
Query: 139 LRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVK 198
           LR +   +    A   ++++++QG+++R++I AA Y+ECS+K  + +  VF  A++  ++
Sbjct: 125 LRDDKGYL----ADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 180

>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp Form Length = 191

Iteration: 1
 Score =  201 bits (512), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 91/180 (50%), Positives = 127/180 (70%)
Query: 22  KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
           + +K   VGD  VGKTCLLI++T NKFP++YVPTVFDNY  T+ +  + Y + L+DTAGQ
Sbjct: 2   QTIKCVVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 82  EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
           EDY+RLRP+SYP TD FL+CFS+ S SS+EN+  KW PE+ HHCPK P +LVGT+ DLR 
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 121
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQD 201
           +  TI+K    +   ++    +K+ R +KA +Y+ECSA   +GL  VF  A+ +A++  +
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPE 181

>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5 Length = 182

Iteration: 1
 Score =  201 bits (510), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 96/183 (52%), Positives = 127/183 (69%), Gaps = 4/183 (2%)
Query: 17  SKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLW 76
           S S  + +K  TVGDG VGKTCLLI++T N FPTDYVPTVFDN+   + V+  T ++ LW
Sbjct: 2   SMSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLW 61
Query: 77  DTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTK 136
           DTAGQEDY RLRP+SY   D F+L FS+ S +SYEN+  KW PELKH+ P VPI+LVGTK
Sbjct: 62  DTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTK 121
Query: 137 ADLRSENK-TIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRS 195
            DLR + +  ID   A     ++T QG+++++ I A  Y+ECS+K  E +  VF AA+R 
Sbjct: 122 LDLRDDKQFFIDHPGAVP---ITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRV 178
Query: 196 AVK 198
            ++
Sbjct: 179 VLQ 181

>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State Length = 207

Iteration: 1
 Score =  199 bits (507), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 94/176 (53%), Positives = 122/176 (69%)
Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
           K+  VGDG  GKTCLLI  ++++FP  YVPTVF+NY   I VD K  ++ LWDTAGQEDY
Sbjct: 27  KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 86
Query: 85  ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENK 144
           +RLRP+SYP+TD  L+CFS+ S  S ENI  KW PE+KH CP VPIILV  K DLRS+  
Sbjct: 87  DRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEH 146
Query: 145 TIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQ 200
              +    + + V T  G+ M  +I+A +YLECSAK  EG+ +VF  A R+A++K+
Sbjct: 147 VRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQKR 202

>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc- Gmppnp Length = 193

Iteration: 1
 Score =  198 bits (503), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 93/174 (53%), Positives = 120/174 (68%)
Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
           K+  VGDG  GKTCLLI +++++FP  YVPTVF+NY   I VD K  ++ LWDTAGQEDY
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDY 66
Query: 85  ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENK 144
           +RLRP+SYP+TD  L+CFSI S  S ENI  KW PE+KH CP VPIILVG K DLR +  
Sbjct: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEH 126
Query: 145 TIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVK 198
           T  +    + + V + +G+ M  +I A  YLECSAK  EG+ +VF  A R+ ++
Sbjct: 127 TRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQ 180

>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex Length = 201

Iteration: 1
 Score =  197 bits (501), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 93/174 (53%), Positives = 119/174 (68%)
Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
           K+  VGDG  GKTCLLI  ++++FP  YVPTVF+NY   I VD K  ++ LWDTAGQEDY
Sbjct: 27  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDY 86
Query: 85  ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENK 144
           +RLRP+SYP+TD  L+CFSI S  S ENI  KW PE+KH CP VPIILVG K DLR +  
Sbjct: 87  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEH 146
Query: 145 TIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVK 198
           T  +    + + V + +G+ M  +I A  YLECSAK  EG+ +VF  A R+ ++
Sbjct: 147 TRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQ 200

>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8 Length = 180

Iteration: 1
 Score =  197 bits (501), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 92/181 (50%), Positives = 127/181 (70%), Gaps = 4/181 (2%)
Query: 19  SVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDT 78
           S  + +K  TVGDG VGKTC+LI++T N FPTDYVPTVFDN+   + VD  T ++ LWDT
Sbjct: 2   SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDT 61
Query: 79  AGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKAD 138
           AGQEDY RLRP+SY   D F+L FS+ S +SYEN+  KW PEL+H+ P VPIILVGTK D
Sbjct: 62  AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLD 121
Query: 139 LRSENK-TIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV 197
           LR + +  ID   A     ++T+QG+++++ I +  Y+ECS+K  + +  VF AA++  +
Sbjct: 122 LRDDKQFFIDHPGAVP---ITTNQGEELKKLIGSPIYIECSSKTQQNVKAVFDAAIKVVL 178
Query: 198 K 198
           +
Sbjct: 179 Q 179

>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap Length = 193

Iteration: 1
 Score =  196 bits (499), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 92/176 (52%), Positives = 122/176 (69%)
Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
           K+  VGDG  GKTCLLI +++++FP  YVPTVF+NY   I VD K  ++ LWDTAGQEDY
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 66
Query: 85  ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENK 144
           +RLRP+SYP+TD  L+CFSI S  S ENI  KW PE+KH CP VPIILVG K DLR++  
Sbjct: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 126
Query: 145 TIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQ 200
           T  +    + + V   +G+ M  +I A  Y+ECSAK  +G+ +VF  A R+A++ +
Sbjct: 127 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQAR 182

>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Length = 190

Iteration: 1
 Score =  196 bits (499), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 92/176 (52%), Positives = 122/176 (69%)
Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
           K+  VGDG  GKTCLLI +++++FP  YVPTVF+NY   I VD K  ++ LWDTAGQEDY
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 66
Query: 85  ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENK 144
           +RLRP+SYP+TD  L+CFSI S  S ENI  KW PE+KH CP VPIILVG K DLR++  
Sbjct: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 126
Query: 145 TIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQ 200
           T  +    + + V   +G+ M  +I A  Y+ECSAK  +G+ +VF  A R+A++ +
Sbjct: 127 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQAR 182

>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology Domains Of Dbs In Complex With Rhoa Length = 192

Iteration: 1
 Score =  196 bits (498), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 92/176 (52%), Positives = 121/176 (68%)
Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
           K+  VGDG  GKTCLLI  ++++FP  YVPTVF+NY   I VD K  ++ LWDTAGQEDY
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 68
Query: 85  ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENK 144
           +RLRP+SYP+TD  L+CFSI S  S ENI  KW PE+KH CP VPIILVG K DLR++  
Sbjct: 69  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 128
Query: 145 TIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQ 200
           T  +    + + V   +G+ M  +I A  Y+ECSAK  +G+ +VF  A R+A++ +
Sbjct: 129 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQAR 184

>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap Domain Of Arhgap20 Length = 180

Iteration: 1
 Score =  196 bits (498), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 92/174 (52%), Positives = 121/174 (69%)
Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
           K+  VGDG  GKTCLLI +++++FP  YVPTVF+NY   I VD K  ++ LWDTAGQEDY
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 66
Query: 85  ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENK 144
           +RLRP+SYP+TD  L+CFSI S  S ENI  KW PE+KH CP VPIILVG K DLR++  
Sbjct: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 126
Query: 145 TIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVK 198
           T  +    + + V   +G+ M  +I A  Y+ECSAK  +G+ +VF  A R+A++
Sbjct: 127 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 180

>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex Length = 193

Iteration: 1
 Score =  196 bits (498), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 92/176 (52%), Positives = 121/176 (68%)
Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
           K+  VGDG  GKTCLLI  ++++FP  YVPTVF+NY   I VD K  ++ LWDTAGQEDY
Sbjct: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 66
Query: 85  ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENK 144
           +RLRP+SYP+TD  L+CFSI S  S ENI  KW PE+KH CP VPIILVG K DLR++  
Sbjct: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 126
Query: 145 TIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQ 200
           T  +    + + V   +G+ M  +I A  Y+ECSAK  +G+ +VF  A R+A++ +
Sbjct: 127 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQAR 182

>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH Fragment Of Pdzrhogef Length = 178

Iteration: 1
 Score =  196 bits (498), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 92/174 (52%), Positives = 121/174 (69%)
Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
           K+  VGDG  GKTCLLI +++++FP  YVPTVF+NY   I VD K  ++ LWDTAGQEDY
Sbjct: 5   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 64
Query: 85  ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENK 144
           +RLRP+SYP+TD  L+CFSI S  S ENI  KW PE+KH CP VPIILVG K DLR++  
Sbjct: 65  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 124
Query: 145 TIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVK 198
           T  +    + + V   +G+ M  +I A  Y+ECSAK  +G+ +VF  A R+A++
Sbjct: 125 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 178

>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-Associated Rhogef In Complex With Rhoa Length = 196

Iteration: 1
 Score =  196 bits (497), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 92/176 (52%), Positives = 121/176 (68%)
Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
           K+  VGDG  GKTCLLI  ++++FP  YVPTVF+NY   I VD K  ++ LWDTAGQEDY
Sbjct: 10  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 69
Query: 85  ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENK 144
           +RLRP+SYP+TD  L+CFSI S  S ENI  KW PE+KH CP VPIILVG K DLR++  
Sbjct: 70  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 129
Query: 145 TIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQ 200
           T  +    + + V   +G+ M  +I A  Y+ECSAK  +G+ +VF  A R+A++ +
Sbjct: 130 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQAR 185

>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa And Rho-Binding Domain Of Human Rocki Length = 183

Iteration: 1
 Score =  196 bits (497), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 92/174 (52%), Positives = 120/174 (68%)
Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
           K+  VGDG  GKTCLLI  ++++FP  YVPTVF+NY   I VD K  ++ LWDTAGQEDY
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 68
Query: 85  ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENK 144
           +RLRP+SYP+TD  L+CFSI S  S ENI  KW PE+KH CP VPIILVG K DLR++  
Sbjct: 69  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 128
Query: 145 TIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVK 198
           T  +    + + V   +G+ M  +I A  Y+ECSAK  +G+ +VF  A R+A++
Sbjct: 129 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 182

>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex With Rhogdi In Its Active Gppnhp-Bound Form Length = 195

Iteration: 1
 Score =  196 bits (497), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 92/176 (52%), Positives = 121/176 (68%)
Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
           K+  VGDG  GKTCLLI  ++++FP  YVPTVF+NY   I VD K  ++ LWDTAGQEDY
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 68
Query: 85  ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENK 144
           +RLRP+SYP+TD  L+CFSI S  S ENI  KW PE+KH CP VPIILVG K DLR++  
Sbjct: 69  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 128
Query: 145 TIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQ 200
           T  +    + + V   +G+ M  +I A  Y+ECSAK  +G+ +VF  A R+A++ +
Sbjct: 129 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQAR 184

>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+ (Complex A) Length = 185

Iteration: 1
 Score =  196 bits (497), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 92/174 (52%), Positives = 120/174 (68%)
Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
           K+  VGDG  GKTCLLI  ++++FP  YVPTVF+NY   I VD K  ++ LWDTAGQEDY
Sbjct: 11  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 70
Query: 85  ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENK 144
           +RLRP+SYP+TD  L+CFSI S  S ENI  KW PE+KH CP VPIILVG K DLR++  
Sbjct: 71  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 130
Query: 145 TIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVK 198
           T  +    + + V   +G+ M  +I A  Y+ECSAK  +G+ +VF  A R+A++
Sbjct: 131 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 184

>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH DOMAINS WITH GTP- Gamma-S Activated Rhoa Length = 182

Iteration: 1
 Score =  195 bits (496), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 92/174 (52%), Positives = 120/174 (68%)
Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
           K+  VGDG  GKTCLLI  ++++FP  YVPTVF+NY   I VD K  ++ LWDTAGQEDY
Sbjct: 8   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 67
Query: 85  ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENK 144
           +RLRP+SYP+TD  L+CFSI S  S ENI  KW PE+KH CP VPIILVG K DLR++  
Sbjct: 68  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 127
Query: 145 TIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVK 198
           T  +    + + V   +G+ M  +I A  Y+ECSAK  +G+ +VF  A R+A++
Sbjct: 128 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 181

>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177

Iteration: 1
 Score =  195 bits (496), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 92/173 (53%), Positives = 120/173 (69%)
Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
           K+  VGDG  GKTCLLI +++++FP  YVPTVF+NY   I VD K  ++ LWDTAGQEDY
Sbjct: 5   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 64
Query: 85  ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENK 144
           +RLRP+SYP+TD  L+CFSI S  S ENI  KW PE+KH CP VPIILVG K DLR++  
Sbjct: 65  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 124
Query: 145 TIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV 197
           T  +    + + V   +G+ M  +I A  Y+ECSAK  +G+ +VF  A R+A+
Sbjct: 125 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAAL 177

>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex Length = 201

Iteration: 1
 Score =  194 bits (492), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 92/174 (52%), Positives = 118/174 (67%)
Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
           K+  VGDG  GKTCLLI  ++++FP  YVPTVF+NY   I VD K  ++ LWDTAGQEDY
Sbjct: 27  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDY 86
Query: 85  ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENK 144
           +RLRP+SYP+TD  L+CFSI S  S ENI  KW PE+KH  P VPIILVG K DLR +  
Sbjct: 87  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFXPNVPIILVGNKKDLRQDEH 146
Query: 145 TIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVK 198
           T  +    + + V + +G+ M  +I A  YLECSAK  EG+ +VF  A R+ ++
Sbjct: 147 TRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQ 200

>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa Mutant (Q63l) Length = 184

Iteration: 1
 Score =  193 bits (490), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 91/174 (52%), Positives = 120/174 (68%)
Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
           K+  VGDG  GKTCLLI +++++FP  YVPTVF+NY   I VD K  ++ LWDTAG EDY
Sbjct: 10  KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDY 69
Query: 85  ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENK 144
           +RLRP+SYP+TD  L+CFSI S  S ENI  KW PE+KH CP VPIILVG K DLR++  
Sbjct: 70  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 129
Query: 145 TIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVK 198
           T  +    + + V   +G+ M  +I A  Y+ECSAK  +G+ +VF  A R+A++
Sbjct: 130 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 183

>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The Effector Domain Of The Protein Kinase PknPRK1 Length = 182

Iteration: 1
 Score =  192 bits (488), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 91/174 (52%), Positives = 119/174 (68%)
Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
           K+  VGD   GKTCLLI  ++++FP  YVPTVF+NY   I VD K  ++ LWDTAGQEDY
Sbjct: 8   KLVIVGDVACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 67
Query: 85  ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENK 144
           +RLRP+SYP+TD  L+CFSI S  S ENI  KW PE+KH CP VPIILVG K DLR++  
Sbjct: 68  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 127
Query: 145 TIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVK 198
           T  +    + + V   +G+ M  +I A  Y+ECSAK  +G+ +VF  A R+A++
Sbjct: 128 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 181

>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With Gdp Length = 180

Iteration: 1
 Score =  191 bits (486), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 90/174 (51%), Positives = 119/174 (68%)
Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
           K+  VGD   GKTCLLI  ++++FP  YVPTVF+NY   I VD K  ++ LWDTAGQEDY
Sbjct: 7   KLVIVGDVACGKTCLLIVFSKDQFPAVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 66
Query: 85  ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENK 144
           +R RP+SYP+TD  L+CFSI S  S ENI  KW PE+KH CP VPIILVG K DLR++  
Sbjct: 67  DRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 126
Query: 145 TIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVK 198
           T  +    + + V  ++G+ M  +I A  Y+ECSAK  +G+ +VF  A R+A++
Sbjct: 127 TARELAKMKQEPVKPAEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 180

>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex Length = 194

Iteration: 1
 Score =  183 bits (465), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 83/170 (48%), Positives = 119/170 (70%)
Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQED 83
           LK   VGDG VGKTCLL+++  + FP +YVPTVFD+Y  ++TV  K Y + L+DTAGQED
Sbjct: 19  LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQED 78
Query: 84  YERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSEN 143
           Y+RLRP+SYP TD FL+CFS+ + +S++N+  +W PELK + P VP +L+GT+ DLR + 
Sbjct: 79  YDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDP 138
Query: 144 KTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAV 193
           KT+ +    +   +   QG+K+ ++I A  Y+ECSA   +GL  VF  A+
Sbjct: 139 KTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAI 188

>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From Saccharomyces Cerevisiae Length = 188

Iteration: 1
 Score =  181 bits (459), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 83/173 (47%), Positives = 118/173 (68%)
Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
           K+  VGDG  GKTCLLI +++ +FP  YVPTVF+NY   + VD +  ++ LWDTAGQEDY
Sbjct: 12  KLVIVGDGACGKTCLLIVNSKGQFPEVYVPTVFENYVADVEVDGRRVELALWDTAGQEDY 71
Query: 85  ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENK 144
           +RLRP+SYP+++  L+CFSI    S EN+  KW  E+ H C  VPIILVG K DLR++ +
Sbjct: 72  DRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVLHFCQGVPIILVGCKVDLRNDPQ 131
Query: 145 TIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV 197
           TI++ +      V++ +G+ +  +I A  Y ECSAK   G+ +VF AA R+++
Sbjct: 132 TIEQLRQEGQQPVTSQEGQSVADQIGATGYYECSAKTGYGVREVFEAATRASL 184

>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State Length = 201

Iteration: 1
 Score =  179 bits (455), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 81/178 (45%), Positives = 121/178 (67%)
Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQED 83
           +K   VGDG VGKT L++++T N +PT+Y+PT FDN+   ++VD +   + L DTAGQ++
Sbjct: 21  VKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDE 80
Query: 84  YERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSEN 143
           +++LRP+ Y NTD FLLCFS+ S SS++N+  KW PE++ HCPK PIILVGT++DLR + 
Sbjct: 81  FDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDV 140
Query: 144 KTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQD 201
           K + +    +   V     K +  +IKAA Y+ECSA   + L +VF AA+ + ++  D
Sbjct: 141 KVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAIVAGIQYSD 198

>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein Rhod Length = 214

Iteration: 1
 Score =  175 bits (444), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 77/182 (42%), Positives = 117/182 (64%)
Query: 22  KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
           +++KV  VGDG  GKT LL+   +  FP  Y PTVF+ Y   + V  K   + +WDTAGQ
Sbjct: 33  RSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQ 92
Query: 82  EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
           +DY+RLRP+ YP+    LLCF + S +S++NI ++WYPE+ H C KVPII+VG K DLR 
Sbjct: 93  DDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRK 152
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQD 201
           +   ++K +   ++ V+  +G++M R + A  YLECSA+L++ +  VF  A   A+  + 
Sbjct: 153 DKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAEVALSSRG 212
Query: 202 KS 203
           ++
Sbjct: 213 RN 214

>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium Length = 194

Iteration: 1
 Score =  156 bits (394), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 77/189 (40%), Positives = 115/189 (60%), Gaps = 13/189 (6%)
Query: 1   MLSGAQTTKGGDKDVKSKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY 60
           ML+ +    G  K    K   KALK+  VGDG VGKTCLL+  ++ + PT YVPTVF+N+
Sbjct: 4   MLAFSDMNTGAGKIENGK---KALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENF 60
Query: 61  PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPE 120
              +   N+ + + LWDTAGQE+Y+RLRP+SY ++D  LLCF++ + +S++NI +KW PE
Sbjct: 61  SHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPE 120
Query: 121 LKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAK 180
           +KH+      +LVG K DLR +            D V+  +G  + +K+    Y+E S+ 
Sbjct: 121 IKHYIDTAKTVLVGLKVDLRKDGS----------DDVTKQEGDDLCQKLGCVAYIEASSV 170
Query: 181 LNEGLDQVF 189
              GL++VF
Sbjct: 171 AKIGLNEVF 179

>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To Ehrho1-Gtpgammas Length = 188

Iteration: 1
 Score =  156 bits (394), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 72/168 (42%), Positives = 108/168 (64%), Gaps = 10/168 (5%)
Query: 22  KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
           KALK+  VGDG VGKTCLL+  ++ + PT YVPTVF+N+   +   N+ + + LWDTAGQ
Sbjct: 21  KALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQ 80
Query: 82  EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
           E+Y+RLRP+SY ++D  LLCF++ + +S++NI +KW PE+KH+      +LVG K DLR 
Sbjct: 81  EEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRK 140
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVF 189
           +            D V+  +G  + +K+    Y+E S+    GL++VF
Sbjct: 141 DGS----------DDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVF 178

>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe Complex Structure Length = 200

Iteration: 1
 Score =  141 bits (356), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 68/176 (38%), Positives = 106/176 (60%), Gaps = 1/176 (0%)
Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
           K+  VGD   GKT LL    ++ FP +YVPTVF+NY  +  +D +  +++LWDT+G   Y
Sbjct: 25  KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY 84
Query: 85  ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENK 144
           + +RP+SYP++D  L+CF I    + +++L KW  E++  CP   ++LVG K+DLR++  
Sbjct: 85  DNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVS 144
Query: 145 TIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEG-LDQVFIAAVRSAVKK 199
           T+ +        VS  QG  M ++I AA Y+ECSA  +E  +  +F  A  + V K
Sbjct: 145 TLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVNK 200

>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS Length = 184

Iteration: 1
 Score =  141 bits (356), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 71/191 (37%), Positives = 112/191 (58%), Gaps = 8/191 (4%)
Query: 10  GGDKDVKSKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNK 69
           G +++VK K       +  VGD   GKT LL    ++ FP +YVPTVF+NY  +  +D +
Sbjct: 1   GSNQNVKCK-------IVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQ 53
Query: 70  TYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVP 129
             +++LWDT+G   Y+ +RP+SYP++D  L+CF I    + +++L KW  E++  CP   
Sbjct: 54  RIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTK 113
Query: 130 IILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEG-LDQV 188
           ++LVG K+DLR++  T+ +        VS  QG  M ++I AA Y+ECSA  +E  +  +
Sbjct: 114 MLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDI 173
Query: 189 FIAAVRSAVKK 199
           F  A  + V K
Sbjct: 174 FHVATLACVNK 184

>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A Constitutively Activated Small G Protein Length = 205

Iteration: 1
 Score =  141 bits (356), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 68/176 (38%), Positives = 106/176 (60%), Gaps = 1/176 (0%)
Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
           K+  VGD   GKT LL    ++ FP +YVPTVF+NY  +  +D +  +++LWDT+G   Y
Sbjct: 30  KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY 89
Query: 85  ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENK 144
           + +RP+SYP++D  L+CF I    + +++L KW  E++  CP   ++LVG K+DLR++  
Sbjct: 90  DNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVS 149
Query: 145 TIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEG-LDQVFIAAVRSAVKK 199
           T+ +        VS  QG  M ++I AA Y+ECSA  +E  +  +F  A  + V K
Sbjct: 150 TLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVNK 205

>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1 Length = 214

Iteration: 1
 Score =  113 bits (282), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 55/159 (34%), Positives = 92/159 (57%)
Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
           K+  VGD   GKT +L    ++ +P  YVPTVF+NY   +  + +  +++LWDT+G   Y
Sbjct: 29  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYY 88
Query: 85  ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENK 144
           + +RP+ Y ++D  LLCF I    + ++ L KW  E+  +CP   ++L+G K DLR++  
Sbjct: 89  DNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLS 148
Query: 145 TIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNE 183
           T+ +    +   +S  QG  + +++ A  YLE SA  +E
Sbjct: 149 TLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSE 187

>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound With Rnd1 Gtpase Length = 197

Iteration: 1
 Score =  113 bits (282), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 55/159 (34%), Positives = 92/159 (57%)
Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
           K+  VGD   GKT +L    ++ +P  YVPTVF+NY   +  + +  +++LWDT+G   Y
Sbjct: 12  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYY 71
Query: 85  ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENK 144
           + +RP+ Y ++D  LLCF I    + ++ L KW  E+  +CP   ++L+G K DLR++  
Sbjct: 72  DNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLS 131
Query: 145 TIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNE 183
           T+ +    +   +S  QG  + +++ A  YLE SA  +E
Sbjct: 132 TLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSE 170

>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The Active Gtp Bound State Length = 198

Iteration: 1
 Score =  113 bits (282), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 55/159 (34%), Positives = 92/159 (57%)
Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
           K+  VGD   GKT +L    ++ +P  YVPTVF+NY   +  + +  +++LWDT+G   Y
Sbjct: 13  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYY 72
Query: 85  ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENK 144
           + +RP+ Y ++D  LLCF I    + ++ L KW  E+  +CP   ++L+G K DLR++  
Sbjct: 73  DNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLS 132
Query: 145 TIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNE 183
           T+ +    +   +S  QG  + +++ A  YLE SA  +E
Sbjct: 133 TLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSE 171

>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 92.0 bits (227), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 60/180 (33%), Positives = 96/180 (53%), Gaps = 17/180 (9%)
Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
           K+  VG   VGK+ L I   +N F  +Y PT+ D+Y   + +D +T  + + DTAGQE+Y
Sbjct: 6   KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 65
Query: 85  ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKH--HCPKVPIILVGTKADLRSE 142
             +R       + FL  F+I +T S+E+I   +  ++K       VP++LVG K+DL S 
Sbjct: 66  SAMRDQYMRTGEGFLCVFAINNTKSFEDI-HHYREQIKRVKDSEDVPMVLVGNKSDLPS- 123
Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQDK 202
            +T+D K+A +   ++ S G           ++E SAK  +G+D  F   VR   K ++K
Sbjct: 124 -RTVDTKQAQD---LARSYG---------IPFIETSAKTRQGVDDAFYTLVREIRKHKEK 170

>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras And Inhibit Sos-Mediated Nucleotide Exchange Activity Length = 189

Iteration: 1
 Score = 89.0 bits (219), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 59/179 (32%), Positives = 94/179 (52%), Gaps = 17/179 (9%)
Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
           K+  VG   VGK+ L I   +N F  +Y PT+ D+Y   + +D +T  + + DTAGQE+Y
Sbjct: 6   KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 65
Query: 85  ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKH--HCPKVPIILVGTKADLRSE 142
             +R       + FL  F+I +T S+E+I   +  ++K       VP++LVG K DL S 
Sbjct: 66  SAMRDQYMRTGEGFLCVFAINNTKSFEDI-HHYREQIKRVKDSEDVPMVLVGNKCDLPS- 123
Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQD 201
            +T+D K+A +   ++ S G           ++E SAK  +G+D  F   VR   K ++
Sbjct: 124 -RTVDTKQAQD---LARSYG---------IPFIETSAKTRQGVDDAFYTLVREIRKHKE 169

>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2 (Rras2) In The Gdp Bound State Length = 172

Iteration: 1
 Score = 87.0 bits (214), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 86/168 (51%), Gaps = 14/168 (8%)
Query: 36  KTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNT 95
           K+ L I   ++ F TDY PT+ D+Y     +D++   + + DTAGQE++  +R       
Sbjct: 18  KSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTG 77
Query: 96  DCFLLCFSIGSTSSYENILSKWYPELK-HHCPKVPIILVGTKADLRSENKTIDKKKAAEV 154
           + FLL FS+    S+E I       L+     + P+IL+G KADL  + +          
Sbjct: 78  EGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQ---------- 127
Query: 155 DLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQDK 202
             V+  +G+++ R++K   Y+E SAK+   +DQ F   VR   K Q++
Sbjct: 128 --VTQEEGQQLARQLKVT-YMEASAKIRMNVDQAFHELVRVIRKFQEQ 172

>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A Transforming And A Nontransforming Gly-12 Mutant Of P21-H-Ras Length = 166

Iteration: 1
 Score = 86.7 bits (213), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 55/172 (31%), Positives = 92/172 (53%), Gaps = 17/172 (9%)
Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
           K+  VG   VGK+ L I   +N F  +Y PT+ D+Y   + +D +T  + + DTAGQE+Y
Sbjct: 5   KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64
Query: 85  ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKH--HCPKVPIILVGTKADLRSE 142
             +R       + FL  F+I +T S+E+I  ++  ++K       VP++LVG K DL + 
Sbjct: 65  SAMRDQYMRTGEGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDLAA- 122
Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
            +T++ ++A +   ++ S G           Y+E SAK  +G++  F   VR
Sbjct: 123 -RTVESRQAQD---LARSYG---------IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 55/172 (31%), Positives = 92/172 (53%), Gaps = 17/172 (9%)
Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
           K+  VG   VGK+ L I   +N F  +Y PT+ D+Y   + +D +T  + + DTAGQE+Y
Sbjct: 5   KLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64
Query: 85  ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKH--HCPKVPIILVGTKADLRSE 142
             +R       + FL  F+I +T S+E+I  ++  ++K       VP++LVG K DL + 
Sbjct: 65  SAMRDQYMRTGEGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDLAA- 122
Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
            +T++ ++A +   ++ S G           Y+E SAK  +G++  F   VR
Sbjct: 123 -RTVESRQAQD---LARSYG---------IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 55/172 (31%), Positives = 92/172 (53%), Gaps = 17/172 (9%)
Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
           K+  VG   VGK+ L I   +N F  +Y PT+ D+Y   + +D +T  + + DTAGQE+Y
Sbjct: 5   KLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64
Query: 85  ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKH--HCPKVPIILVGTKADLRSE 142
             +R       + FL  F+I +T S+E+I  ++  ++K       VP++LVG K DL + 
Sbjct: 65  SAMRDQYMRTGEGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDLAA- 122
Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
            +T++ ++A +   ++ S G           Y+E SAK  +G++  F   VR
Sbjct: 123 -RTVESRQAQD---LARSYG---------IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And Magnesium Length = 166

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 55/172 (31%), Positives = 91/172 (52%), Gaps = 17/172 (9%)
Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
           K+  VG   VGK+ L I   +N F  +Y PT+ D+Y   + +D +T  + + DTAGQE+Y
Sbjct: 5   KLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64
Query: 85  ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKH--HCPKVPIILVGTKADLRSE 142
             +R       + FL  F+I +T S+E+I  ++  ++K       VP++LVG K DL   
Sbjct: 65  SAMRDQYMRTGEGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL--A 121
Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
            +T++ ++A +   ++ S G           Y+E SAK  +G++  F   VR
Sbjct: 122 GRTVESRQAQD---LARSYG---------IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213

Iteration: 1
 Score = 84.0 bits (206), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 100/204 (49%), Gaps = 19/204 (9%)
Query: 2   LSGAQTTKGGDKDVKSKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNY 60
           +SG +T      +   KS    +K+  +GD  VGK+CLL+   E+KF   ++ T+  D  
Sbjct: 1   MSGLRTVSASSGN--GKSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFK 58
Query: 61  PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPE 120
             T+ ++ K   + LWDTAGQE +  +    Y      +L + +    ++ NI  +W+  
Sbjct: 59  IKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNI-KQWFKT 117
Query: 121 LKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSA 179
           +  H   +  ++LVG K+D+             E  +V+  QG+ + +++    ++E SA
Sbjct: 118 VNEHANDEAQLLLVGNKSDM-------------ETRVVTADQGEALAKEL-GIPFIESSA 163
Query: 180 KLNEGLDQVFIAAVRSAVKKQDKS 203
           K ++ ++++F    +   +K D +
Sbjct: 164 KNDDNVNEIFFTLAKLIQEKIDSN 187

>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 84.0 bits (206), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 90/169 (53%), Gaps = 17/169 (10%)
Query: 36  KTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNT 95
           K+ L I   +N F  +Y PT+ D+Y   + +D +T  + + DTAGQE+Y  +R       
Sbjct: 17  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 76
Query: 96  DCFLLCFSIGSTSSYENILSKWYPELKH--HCPKVPIILVGTKADLRSENKTIDKKKAAE 153
           + FL  F+I +T S+E+I   +  ++K       VP++LVG K+DL S  +T+D K+A +
Sbjct: 77  EGFLCVFAINNTKSFEDI-HHYREQIKRVKDSEDVPMVLVGNKSDLPS--RTVDTKQAQD 133
Query: 154 VDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQDK 202
              ++ S G           ++E SAK  +G+D  F   VR   K ++K
Sbjct: 134 ---LARSYG---------IPFIETSAKTRQGVDDAFYTLVREIRKHKEK 170

>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 84.0 bits (206), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 90/169 (53%), Gaps = 17/169 (10%)
Query: 36  KTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNT 95
           K+ L I   +N F  +Y PT+ D+Y   + +D +T  + + DTAGQE+Y  +R       
Sbjct: 17  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 76
Query: 96  DCFLLCFSIGSTSSYENILSKWYPELKH--HCPKVPIILVGTKADLRSENKTIDKKKAAE 153
           + FL  F+I +T S+E+I   +  ++K       VP++LVG K+DL S  +T+D K+A +
Sbjct: 77  EGFLCVFAINNTKSFEDI-HHYREQIKRVKDSEDVPMVLVGNKSDLPS--RTVDTKQAQD 133
Query: 154 VDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQDK 202
              ++ S G           ++E SAK  +G+D  F   VR   K ++K
Sbjct: 134 ---LARSYG---------IPFIETSAKTRQGVDDAFYTLVREIRKHKEK 170

>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A Novel Antiviral Drug Target Length = 177

Iteration: 1
 Score = 83.2 bits (204), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 58/184 (31%), Positives = 86/184 (46%), Gaps = 20/184 (10%)
Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDT-ITVDNKTYDVTLWDTAGQE 82
            KV  +GDG VGK+ L+  +  NKF T    T+   + +  + VD     + +WDTAGQE
Sbjct: 8   FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 67
Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-----PKVPIILVGTKA 137
            +  LR   Y  +DC LL FS+  + S++N LS W  E  ++         P +++G K 
Sbjct: 68  RFRSLRTPFYRGSDCCLLTFSVDDSQSFQN-LSNWKKEFIYYADVKEPESFPFVILGNKI 126
Query: 138 DLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV 197
           D+ SE +            VST + +   R      Y E SAK    +   F  AVR  +
Sbjct: 127 DI-SERQ------------VSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVL 173
Query: 198 KKQD 201
             +D
Sbjct: 174 ATED 177

>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A Novel Type Of Action Of A Bacterial Exoenzyme Length = 187

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/177 (33%), Positives = 84/177 (47%), Gaps = 26/177 (14%)
Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
           KV  VG G VGK+ L +    ++F  DY PT  D+Y   + +D +   + + DTAGQEDY
Sbjct: 20  KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 79
Query: 85  ERLRPMSYPNTDCFLLCFSIGSTSSY-------ENILSKWYPELKHHCPKVPIILVGTKA 137
             +R   + + + FL  FSI    S+       E IL     E       VP +LVG K+
Sbjct: 80  AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDE------NVPFLLVGNKS 133
Query: 138 DLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
           DL       DK++      VS  + K  R +     Y+E SAK    +D+VF   +R
Sbjct: 134 DLE------DKRQ------VSVEEAKN-RAEQWNVNYVETSAKTRANVDKVFFDLMR 177

>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding Domain Complex Length = 175

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/177 (33%), Positives = 84/177 (47%), Gaps = 26/177 (14%)
Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
           KV  VG G VGK+ L +    ++F  DY PT  D+Y   + +D +   + + DTAGQEDY
Sbjct: 8   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 67
Query: 85  ERLRPMSYPNTDCFLLCFSIGSTSSY-------ENILSKWYPELKHHCPKVPIILVGTKA 137
             +R   + + + FL  FSI    S+       E IL     E       VP +LVG K+
Sbjct: 68  AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDE------NVPFLLVGNKS 121
Query: 138 DLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
           DL       DK++      VS  + K  R +     Y+E SAK    +D+VF   +R
Sbjct: 122 DLE------DKRQ------VSVEEAKN-RAEQWNVNYVETSAKTRANVDKVFFDLMR 165

>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex Length = 178

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 87/177 (49%), Gaps = 25/177 (14%)
Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
           KV  VG G VGK+ L +    ++F  DY PT  D+Y   + +D +   + + DTAG EDY
Sbjct: 9   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDY 68
Query: 85  ERLRPMSYPNTDCFLLCFSIGSTSSY-------ENILSKWYPELKHHCPKVPIILVGTKA 137
             +R   + + + FLL FSI    S+       E IL      +K    K+P+++VG K+
Sbjct: 69  AAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILR-----VKAEEDKIPLLVVGNKS 123
Query: 138 DLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
           DL  E + +  ++A            + + +    +Y+E SAK    +D+VF   +R
Sbjct: 124 DL-EERRQVPVEEA------------RSKAEEWGVQYVETSAKTRANVDKVFFDLMR 167

>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium Botulinum C3 Exoenzyme By Rala Gtpase Length = 206

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 59/177 (33%), Positives = 84/177 (47%), Gaps = 26/177 (14%)
Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
           KV  VG G VGK+ L +    ++F  DY PT  D+Y   + +D +   + + DTAGQEDY
Sbjct: 16  KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 75
Query: 85  ERLRPMSYPNTDCFLLCFSIGSTSSY-------ENILSKWYPELKHHCPKVPIILVGTKA 137
             +R   + + + FL  FSI    S+       E IL     E       VP +LVG K+
Sbjct: 76  AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDE------NVPFLLVGNKS 129
Query: 138 DLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
           DL       DK++      VS  + K  R +     Y+E SAK    +D+VF   +R
Sbjct: 130 DLE------DKRQ------VSVEEAKN-RAEQWNVNYVETSAKTRANVDKVFFDLMR 173

>pdb|2BKU|A Chain A, Kap95p:rangtp Complex Length = 177

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 82/175 (46%), Gaps = 17/175 (9%)
Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
            K+  VGDG  GKT  +  H   +F   YVPT+  + +P     +       +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSE 142
            +  LR   Y    C ++ F + S  +Y+N+   W+ +L   C  +PI+L G K D++  
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIK-- 127
Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV 197
               D+K  A+  +          RK K  +Y + SAK N   ++ F+   R  +
Sbjct: 128 ----DRKVKAKSIV--------FHRK-KNLQYYDISAKSNYNFEKPFLWLARKLI 169

>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 92/182 (50%), Gaps = 17/182 (9%)
Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
           +K+  +GD  VGK+CLL+   E+KF   ++ T+  D    T+ ++ K   + LWDTAGQE
Sbjct: 8   MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQE 67
Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRS 141
            +  +    Y      +L + +    ++ NI  +W+  +  H   +  ++LVG K+D+  
Sbjct: 68  RFRTITTAYYRGAMGIILVYDVTDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSDM-- 124
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQD 201
                      E  +V+  QG+ + +++    ++E SAK ++ ++++F    +   +K D
Sbjct: 125 -----------ETRVVTADQGEALAKEL-GIPFIESSAKNDDNVNEIFFTLAKLIQEKID 172
Query: 202 KS 203
            +
Sbjct: 173 SN 174

>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb In Its Active Conformation: Significance For Effector Protein Binding Length = 174

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 87/177 (49%), Gaps = 25/177 (14%)
Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
           KV  VG G VGK+ L +    ++F  DY PT  D+Y   + +D +   + + DTAG EDY
Sbjct: 5   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDY 64
Query: 85  ERLRPMSYPNTDCFLLCFSIGSTSSY-------ENILSKWYPELKHHCPKVPIILVGTKA 137
             +R   + + + FLL FSI    S+       E IL      +K    K+P+++VG K+
Sbjct: 65  AAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILR-----VKAEEDKIPLLVVGNKS 119
Query: 138 DLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
           DL  E + +  ++A            + + +    +Y+E SAK    +D+VF   +R
Sbjct: 120 DL-EERRQVPVEEA------------RSKAEEWGVQYVETSAKTRANVDKVFFDLMR 163

>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase Length = 199

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 46/119 (38%), Positives = 63/119 (52%), Gaps = 3/119 (2%)
Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYP-DTITVDNKTYDVTLWDTAGQE 82
            KV  +GD  VGK+ LL   T N+F  +   T+   +   +I VD KT    +WDTAGQE
Sbjct: 6   FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 65
Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLR 140
            Y R+    Y      LL + I    +YEN+  +W  EL+ H    + I+LVG K+DLR
Sbjct: 66  RYRRITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLR 123

>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170

Iteration: 1
 Score = 81.3 bits (199), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 92/182 (50%), Gaps = 17/182 (9%)
Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
           +K+  +GD  VGK+CLL+   E+KF   ++ T+  D    T+ ++ K   + +WDTAGQE
Sbjct: 4   MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 63
Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRS 141
            +  +    Y      +L + I    ++ NI  +W+  +  H   +  ++LVG K+D+  
Sbjct: 64  RFRTITTAYYRGAMGIILVYDITDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSDM-- 120
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQD 201
                      E  +V+  QG+ + +++    ++E SAK ++ ++++F    +   +K D
Sbjct: 121 -----------ETRVVTADQGEALAKEL-GIPFIESSAKNDDNVNEIFFTLAKLIQEKID 168
Query: 202 KS 203
            +
Sbjct: 169 SN 170

>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer With An Active Conformation Of Switch Ii Length = 177

Iteration: 1
 Score = 81.3 bits (199), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 57/180 (31%), Positives = 84/180 (46%), Gaps = 20/180 (11%)
Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDT-ITVDNKTYDVTLWDTAGQE 82
            KV  +GDG VGK+ L+  +  NKF T    T+   + +  + VD     + +WDTAGQE
Sbjct: 10  FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 69
Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-----PKVPIILVGTKA 137
            +  LR   Y  +DC LL FS+  + S++N LS W  E  ++         P +++G K 
Sbjct: 70  RFRSLRTPFYRGSDCCLLTFSVDDSQSFQN-LSNWKKEFIYYADVKEPESFPFVILGNKI 128
Query: 138 DLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV 197
           D+ SE +            VST + +   R      Y E SAK    +   F  AVR  +
Sbjct: 129 DI-SERQ------------VSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVL 175

>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex With Pde6d Length = 181

Iteration: 1
 Score = 80.9 bits (198), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 60/187 (32%), Positives = 96/187 (51%), Gaps = 19/187 (10%)
Query: 22  KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
           K+ K+  +G   VGK+ L I   E +F   Y PT+ + +   ITV+ + Y + L DTAGQ
Sbjct: 5   KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQ 64
Query: 82  EDYERLRPMSYP-NTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKV--PIILVGTKAD 138
           ++Y  + P +Y  + + ++L +S+ S  S+E ++   + +L     KV  PI+LVG K D
Sbjct: 65  DEYS-IFPQTYSIDINGYILVYSVTSIKSFE-VIKVIHGKLLDMVGKVQIPIMLVGNKKD 122
Query: 139 LRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVK 198
           L  E             ++S  +GK +     AA +LE SAK N+    VF   +  A +
Sbjct: 123 LHMER------------VISYEEGKALAESWNAA-FLESSAKENQTAVDVFRRIILEA-E 168
Query: 199 KQDKSCC 205
           K D +C 
Sbjct: 169 KMDGACS 175

>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue Length = 187

Iteration: 1
 Score = 80.9 bits (198), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 88/169 (52%), Gaps = 17/169 (10%)
Query: 36  KTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNT 95
           K+ L I   +N F  +Y PT+ D+Y   + +D +T  + + DTAG E+Y  +R       
Sbjct: 34  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGHEEYSAMRDQYMRTG 93
Query: 96  DCFLLCFSIGSTSSYENILSKWYPELKH--HCPKVPIILVGTKADLRSENKTIDKKKAAE 153
           + FL  F+I +T S+E+I   +  ++K       VP++LVG K DL S  +T+D K+A +
Sbjct: 94  EGFLCVFAINNTKSFEDI-HHYREQIKRVKDSEDVPMVLVGNKCDLPS--RTVDTKQAQD 150
Query: 154 VDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQDK 202
              ++ S G           ++E SAK  +G+D  F   VR   K ++K
Sbjct: 151 ---LARSYG---------IPFIETSAKTRQGVDDAFYTLVREIRKHKEK 187

>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two Novel Binding Sites That Are Also Present In Ras And Rap Length = 168

Iteration: 1
 Score = 80.9 bits (198), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 59/177 (33%), Positives = 83/177 (46%), Gaps = 26/177 (14%)
Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
           KV  VG G VGK+ L +    ++F  DY PT  D+Y   + +D +   + + DTAGQEDY
Sbjct: 6   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 65
Query: 85  ERLRPMSYPNTDCFLLCFSIGSTSSY-------ENILSKWYPELKHHCPKVPIILVGTKA 137
             +R   + + + FL  FSI    S+       E IL     E       VP +LVG K+
Sbjct: 66  AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDE------NVPFLLVGNKS 119
Query: 138 DLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
           DL       DK++      VS  + K  R       Y+E SAK    +D+VF   +R
Sbjct: 120 DLE------DKRQ------VSVEEAKN-RADQWNVNYVETSAKTRANVDKVFFDLMR 163

>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170

Iteration: 1
 Score = 80.5 bits (197), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 90/181 (49%), Gaps = 17/181 (9%)
Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQED 83
           K+  +GD  VGK+CLL+   E+KF   ++ T+  D    T+ ++ K   + LWDTAGQE 
Sbjct: 5   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 64
Query: 84  YERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSE 142
           +  +    Y      +L + +    ++ NI  +W+  +  H   +  ++LVG K+D    
Sbjct: 65  FRTITTAYYRGAXGIILVYDVTDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSD---- 119
Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQDK 202
                     E  +V+  QG+ + +++    ++E SAK ++ ++++F    +   +K D 
Sbjct: 120 ---------XETRVVTADQGEALAKEL-GIPFIESSAKNDDNVNEIFFTLAKLIQEKIDS 169
Query: 203 S 203
           +
Sbjct: 170 N 170

>pdb|1BYU|A Chain A, Canine Gdp-Ran Length = 216

Iteration: 1
 Score = 80.1 bits (196), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 80/175 (45%), Gaps = 17/175 (9%)
Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
            K+  VGDG  GKT  +  H   +F   YVPT+  + +P     +       +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSE 142
            +  LR   Y    C ++ F + S  +Y+N+   W+ +L   C  +PI+L G K D++  
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV 197
                K KA  +            RK K  +Y + SAK N   ++ F+   R  +
Sbjct: 130 -----KVKAKSI---------VFHRK-KNLQYYDISAKSNYNFEKPFLWLARKLI 169

>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170

Iteration: 1
 Score = 80.1 bits (196), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 90/181 (49%), Gaps = 17/181 (9%)
Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQED 83
           K+  +GD  VGK+CLL+   E+KF   ++ T+  D    T+ ++ K   + +WDTAGQE 
Sbjct: 5   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64
Query: 84  YERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSE 142
           +  +    Y      +L + I    ++ NI  +W+  +  H   +  ++LVG K+D    
Sbjct: 65  FRTITTAYYRGAXGIILVYDITDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSD---- 119
Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQDK 202
                     E  +V+  QG+ + +++    ++E SAK ++ ++++F    +   +K D 
Sbjct: 120 ---------XETRVVTADQGEALAKEL-GIPFIESSAKNDDNVNEIFFTLAKLIQEKIDS 169
Query: 203 S 203
           +
Sbjct: 170 N 170

>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183

Iteration: 1
 Score = 79.7 bits (195), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 91/189 (48%), Gaps = 16/189 (8%)
Query: 17  SKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTL 75
           +K+     K+  +GD  VGKTC+L   +E+ F + ++ T+  D    TI +D K   + +
Sbjct: 2   AKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQI 61
Query: 76  WDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPK-VPIILVG 134
           WDTAGQE +  +    Y      +L + I +  S++NI   W   ++ H    V  +++G
Sbjct: 62  WDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI-RNWIRNIEEHASADVEKMILG 120
Query: 135 TKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
            K D+       DK++      VS  +G+K+       +++E SAK N  ++  F    R
Sbjct: 121 NKCDVN------DKRQ------VSKERGEKLALDY-GIKFMETSAKANINVENAFFTLAR 167
Query: 195 SAVKKQDKS 203
               K DK+
Sbjct: 168 DIKAKMDKN 176

>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase Length = 179

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 82/177 (46%), Gaps = 20/177 (11%)
Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDT-ITVDNKTYDVTLWDTAGQE 82
            K+  +GDG VGK+ L+  +  NKF +    T+   + +  + VD     + +WDTAGQE
Sbjct: 12  FKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 71
Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-----PKVPIILVGTKA 137
            +  LR   Y  +DC LL FS+  + S++N LS W  E  ++         P +++G K 
Sbjct: 72  RFRSLRTPFYRGSDCCLLTFSVDDSQSFQN-LSNWKKEFIYYADVKEPESFPFVILGNKT 130
Query: 138 DLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
           D++                VST + +   +      Y E SAK +  +   F  AVR
Sbjct: 131 DIKERQ-------------VSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAFEEAVR 174

>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 52/181 (28%), Positives = 87/181 (48%), Gaps = 16/181 (8%)
Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
            K+  +GD  VGKTC+L   +E+ F + ++ T+  D    TI +D K   + +WDTAGQE
Sbjct: 7   FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 66
Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRS 141
            +  +    Y      +L + I +  S++NI   W   ++ H    V  +++G K D+  
Sbjct: 67  RFRTITTAYYRGAMGIMLVYDITNEKSFDNI-RNWIRNIEEHASADVEKMILGNKCDVN- 124
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQD 201
                DK++      VS  +G+K+       +++E SAK N  ++  F    R    K D
Sbjct: 125 -----DKRQ------VSKERGEKLALDY-GIKFMETSAKANINVENAFFTLARDIKAKMD 172
Query: 202 K 202
           K
Sbjct: 173 K 173

>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase Length = 184

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 45/119 (37%), Positives = 62/119 (52%), Gaps = 3/119 (2%)
Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYP-DTITVDNKTYDVTLWDTAGQE 82
            KV  +GD  VGK+ LL   T N+F  +   T+   +   +I VD KT    +WDTAGQE
Sbjct: 21  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 80
Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLR 140
            Y  +    Y      LL + I    +YEN+  +W  EL+ H    + I+LVG K+DLR
Sbjct: 81  RYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLR 138

>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex Length = 167

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 84/180 (46%), Gaps = 23/180 (12%)
Query: 22  KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
           +  K+  +G G VGK+ L +   +  F   Y PT+ D+Y   + VD +   + + DTAG 
Sbjct: 2   REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGT 61
Query: 82  EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPK------VPIILVGT 135
           E +  +R +   N   F L +SI + S++ ++      +L+    +      VP+ILVG 
Sbjct: 62  EQFTAMRDLYMKNGQGFALVYSITAQSTFNDL-----QDLREQILRVKDTDDVPMILVGN 116
Query: 136 KADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRS 195
           K DL  E             +V   QG+ + R+     +LE SAK    ++++F   VR 
Sbjct: 117 KCDLEDER------------VVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQ 164

>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 87/170 (51%), Gaps = 16/170 (9%)
Query: 23  ALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQ 81
           + KV  +G+G VGKT L++ + ENKF   ++ T+  ++    + +  K  ++ +WDTAGQ
Sbjct: 6   SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQ 65
Query: 82  EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCP-KVPIILVGTKADLR 140
           E +  L P+ Y +++  +L + I    S++ +   W  EL+     ++ + +VG K DL 
Sbjct: 66  ERFHALGPIYYRDSNGAILVYDITDEDSFQKV-KNWVKELRKMLGNEICLCIVGNKIDLE 124
Query: 141 SENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFI 190
            E              VS  + +     + A  Y   SAK N+G++++F+
Sbjct: 125 KERH------------VSIQEAESYAESVGAKHY-HTSAKQNKGIEELFL 161

>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp Length = 191

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/119 (37%), Positives = 62/119 (52%), Gaps = 3/119 (2%)
Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYP-DTITVDNKTYDVTLWDTAGQE 82
            KV  +GD  VGK+ LL   T N+F  +   T+   +   +I VD KT    +WDTAGQE
Sbjct: 30  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 89
Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLR 140
            Y  +    Y      LL + I    +YEN+  +W  EL+ H    + I+LVG K+DLR
Sbjct: 90  RYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLR 147

>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras Length = 173

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 86/161 (53%), Gaps = 17/161 (10%)
Query: 36  KTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNT 95
           K+ L I   +N F  +Y PT+ D+Y   + +D +T  + + DTAGQE+Y  +R       
Sbjct: 23  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 82
Query: 96  DCFLLCFSIGSTSSYENILSKWYPELKH--HCPKVPIILVGTKADLRSENKTIDKKKAAE 153
           + FL  F+I +T S+E+I  ++  ++K       VP++LVG K DL +  +T++ ++A +
Sbjct: 83  EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQAQD 139
Query: 154 VDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
              ++ S G           Y+E SAK  +G++  F   VR
Sbjct: 140 ---LARSYG---------IPYIETSAKTRQGVEDAFYTLVR 168

>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Length = 170

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 87/170 (51%), Gaps = 16/170 (9%)
Query: 23  ALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQ 81
           + KV  +G+G VGKT L++ + ENKF   ++ T+  ++    + +  K  ++ +WDTAGQ
Sbjct: 6   SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQ 65
Query: 82  EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCP-KVPIILVGTKADLR 140
           E +  L P+ Y +++  +L + I    S++ +   W  EL+     ++ + +VG K DL 
Sbjct: 66  ERFHALGPIYYRDSNGAILVYDITDEDSFQKV-KNWVKELRKMLGNEICLCIVGNKIDLE 124
Query: 141 SENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFI 190
            E              VS  + +     + A  Y   SAK N+G++++F+
Sbjct: 125 KERH------------VSIQEAESYAESVGAKHY-HTSAKQNKGIEELFL 161

>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Length = 184

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 87/170 (51%), Gaps = 16/170 (9%)
Query: 23  ALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQ 81
           + KV  +G+G VGKT L++ + ENKF   ++ T+  ++    + +  K  ++ +WDTAGQ
Sbjct: 20  SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQ 79
Query: 82  EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCP-KVPIILVGTKADLR 140
           E +  L P+ Y +++  +L + I    S++ +   W  EL+     ++ + +VG K DL 
Sbjct: 80  ERFHALGPIYYRDSNGAILVYDITDEDSFQKV-KNWVKELRKMLGNEICLCIVGNKIDLE 138
Query: 141 SENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFI 190
            E              VS  + +     + A  Y   SAK N+G++++F+
Sbjct: 139 KERH------------VSIQEAESYAESVGAKHY-HTSAKQNKGIEELFL 175

>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In Complex With The Active Rala Length = 175

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/177 (32%), Positives = 83/177 (46%), Gaps = 26/177 (14%)
Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
           KV  VG G VGK+ L +    ++F  DY PT  D+Y   + +D +   + + DTAG EDY
Sbjct: 8   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDY 67
Query: 85  ERLRPMSYPNTDCFLLCFSIGSTSSY-------ENILSKWYPELKHHCPKVPIILVGTKA 137
             +R   + + + FL  FSI    S+       E IL     E       VP +LVG K+
Sbjct: 68  AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDE------NVPFLLVGNKS 121
Query: 138 DLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
           DL       DK++      VS  + K  R +     Y+E SAK    +D+VF   +R
Sbjct: 122 DLE------DKRQ------VSVEEAKN-RAEQWNVNYVETSAKTRANVDKVFFDLMR 165

>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 176

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 81/175 (46%), Gaps = 17/175 (9%)
Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
            K+  VGDG  GKT  +  H   +F   YV T+  + +P     +       +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSE 142
            +  LR   Y    C ++ F + S  +Y+N+   W+ +L   C  +PI+L G K D++  
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIK-- 127
Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV 197
               D+K  A+  +          RK K  +Y + SAK N   ++ F+   R  +
Sbjct: 128 ----DRKVKAKSIV--------FHRK-KNLQYYDISAKSNYNFEKPFLWLARKLI 169

>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/138 (34%), Positives = 70/138 (50%), Gaps = 8/138 (5%)
Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVD-NKTYDVTLWDTAGQ 81
           LKV  +GD  VGKT L+  +  +K+   Y  T+  D     +TVD +K   + +WDTAGQ
Sbjct: 9   LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ 68
Query: 82  EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-----PKVPIILVGTK 136
           E ++ L    Y   DC +L + + + SS+ENI S W  E   H         P +++G K
Sbjct: 69  ERFQSLGVAFYRGADCCVLVYDVTNASSFENIKS-WRDEFLVHANVNSPETFPFVILGNK 127
Query: 137 ADLRSENKTIDKKKAAEV 154
            D     K + +K A E+
Sbjct: 128 IDAEESKKIVSEKSAQEL 145

>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 58/185 (31%), Positives = 89/185 (48%), Gaps = 22/185 (11%)
Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDT-ITVDNKTYDVTLWDTAGQE 82
           LKV  +GDG VGK+ L+  +  NKF +    T+   + +  + VD +   + +WDTAGQE
Sbjct: 8   LKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQE 67
Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-----PKVPIILVGTKA 137
            ++ LR   Y   DC LL FS+    S+EN L  W  E  ++         P +++G K 
Sbjct: 68  RFKSLRTPFYRGADCCLLTFSVDDRQSFEN-LGNWQKEFIYYADVKDPEHFPFVVLGNKV 126
Query: 138 DLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRS-- 195
           D   E++            V+T + +    +     YLE SAK +  +   F  AVR   
Sbjct: 127 D--KEDRQ-----------VTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQVL 173
Query: 196 AVKKQ 200
           AV++Q
Sbjct: 174 AVEEQ 178

>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 171

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 86/161 (53%), Gaps = 17/161 (10%)
Query: 36  KTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNT 95
           K+ L I   +N F  +Y PT+ D+Y   + +D +T  + + DTAGQE+Y  +R       
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 96  DCFLLCFSIGSTSSYENILSKWYPELKH--HCPKVPIILVGTKADLRSENKTIDKKKAAE 153
           + FL  F+I +T S+E+I  ++  ++K       VP++LVG K DL +  +T++ ++A +
Sbjct: 76  EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQAQD 132
Query: 154 VDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
              ++ S G           Y+E SAK  +G++  F   VR
Sbjct: 133 ---LARSYG---------IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The Catalytic Domains Of Normal Ras Protein And An Oncogenic Mutant Complexed With Gsp Length = 171

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 86/161 (53%), Gaps = 17/161 (10%)
Query: 36  KTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNT 95
           K+ L I   +N F  +Y PT+ D+Y   + +D +T  + + DTAGQE+Y  +R       
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 96  DCFLLCFSIGSTSSYENILSKWYPELKH--HCPKVPIILVGTKADLRSENKTIDKKKAAE 153
           + FL  F+I +T S+E+I  ++  ++K       VP++LVG K DL +  +T++ ++A +
Sbjct: 76  EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQAQD 132
Query: 154 VDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
              ++ S G           Y+E SAK  +G++  F   VR
Sbjct: 133 ---LARSYG---------IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant Length = 216

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 81/175 (46%), Gaps = 17/175 (9%)
Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
            K+  VGDG  GKT  +  H   +F   YV T+  + +P     +       +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSE 142
            Y  LR   Y    C ++ F + S  +Y+N+   W+ +L   C  +PI+L G K D++  
Sbjct: 71  KYGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIK-- 127
Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV 197
               D+K  A+  +          RK K  +Y + SAK N   ++ F+   R  +
Sbjct: 128 ----DRKVKAKSIV--------FHRK-KNLQYYDISAKSNYNFEKPFLWLARKLI 169

>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp Length = 177

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 58/180 (32%), Positives = 92/180 (51%), Gaps = 18/180 (10%)
Query: 22  KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
           K+ K+  +G   VGK+ L I   E +F   Y PT+ + +   ITV+ + Y + L DTAGQ
Sbjct: 5   KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQ 64
Query: 82  EDYERLRPMSYP-NTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKV--PIILVGTKAD 138
           ++Y  + P +Y  + + ++L +S+ S  S+E ++   + +L     KV  PI+LVG K D
Sbjct: 65  DEYS-IFPQTYSIDINGYILVYSVTSIKSFE-VIKVIHGKLLDMVGKVQIPIMLVGNKKD 122
Query: 139 LRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVK 198
           L  E             ++S  +GK +     AA +LE SAK N+    VF   +  A K
Sbjct: 123 LHMER------------VISYEEGKALAESWNAA-FLESSAKENQTAVDVFRRIILEAEK 169

>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 86/161 (53%), Gaps = 17/161 (10%)
Query: 36  KTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNT 95
           K+ L I   +N F  +Y PT+ D+Y   + +D +T  + + DTAGQE+Y  +R       
Sbjct: 21  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 80
Query: 96  DCFLLCFSIGSTSSYENILSKWYPELKH--HCPKVPIILVGTKADLRSENKTIDKKKAAE 153
           + FL  F+I +T S+E+I  ++  ++K       VP++LVG K DL +  +T++ ++A +
Sbjct: 81  EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQAQD 137
Query: 154 VDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
              ++ S G           Y+E SAK  +G++  F   VR
Sbjct: 138 ---LARSYG---------IPYIETSAKTRQGVEDAFYTLVR 166

>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 86/161 (53%), Gaps = 17/161 (10%)
Query: 36  KTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNT 95
           K+ L I   +N F  +Y PT+ D+Y   + +D +T  + + DTAGQE+Y  +R       
Sbjct: 21  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 80
Query: 96  DCFLLCFSIGSTSSYENILSKWYPELKH--HCPKVPIILVGTKADLRSENKTIDKKKAAE 153
           + FL  F+I +T S+E+I  ++  ++K       VP++LVG K DL +  +T++ ++A +
Sbjct: 81  EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQAQD 137
Query: 154 VDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
              ++ S G           Y+E SAK  +G++  F   VR
Sbjct: 138 ---LARSYG---------IPYIETSAKTRQGVEDAFYTLVR 166

>pdb|1WQ1|R Chain R, Ras-Rasgap Complex Length = 166

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 86/161 (53%), Gaps = 17/161 (10%)
Query: 36  KTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNT 95
           K+ L I   +N F  +Y PT+ D+Y   + +D +T  + + DTAGQE+Y  +R       
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 96  DCFLLCFSIGSTSSYENILSKWYPELKH--HCPKVPIILVGTKADLRSENKTIDKKKAAE 153
           + FL  F+I +T S+E+I  ++  ++K       VP++LVG K DL +  +T++ ++A +
Sbjct: 76  EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQAQD 132
Query: 154 VDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
              ++ S G           Y+E SAK  +G++  F   VR
Sbjct: 133 ---LARSYG---------IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 86/161 (53%), Gaps = 17/161 (10%)
Query: 36  KTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNT 95
           K+ L I   +N F  +Y PT+ D+Y   + +D +T  + + DTAGQE+Y  +R       
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 96  DCFLLCFSIGSTSSYENILSKWYPELKH--HCPKVPIILVGTKADLRSENKTIDKKKAAE 153
           + FL  F+I +T S+E+I  ++  ++K       VP++LVG K DL +  +T++ ++A +
Sbjct: 76  EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQAQD 132
Query: 154 VDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
              ++ S G           Y+E SAK  +G++  F   VR
Sbjct: 133 ---LARSYG---------IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e) Complexed With Gppnhp And The Ras-Binding-Domain Of Human C-Raf1, Residues 51-131 Length = 167

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 83/175 (47%), Gaps = 13/175 (7%)
Query: 22  KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
           +  K+  +G G VGK+ L +   +  F  +Y PT+ D+Y   + VD +   + + DTAG 
Sbjct: 2   REYKLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIEDSYRKQVEVDCQQCMLEILDTAGT 61
Query: 82  EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELK-HHCPKVPIILVGTKADLR 140
           E +  +R +   N   F L +SI + S++ ++       L+      VP+ILVG K DL 
Sbjct: 62  EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE 121
Query: 141 SENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRS 195
            E             +V   QG+ + R+     +LE SAK    ++++F   VR 
Sbjct: 122 DER------------VVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQ 164

>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 77.8 bits (190), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 86/161 (53%), Gaps = 17/161 (10%)
Query: 36  KTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNT 95
           K+ L I   +N F  +Y PT+ D+Y   + +D +T  + + DTAGQE+Y  +R       
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 96  DCFLLCFSIGSTSSYENILSKWYPELKH--HCPKVPIILVGTKADLRSENKTIDKKKAAE 153
           + FL  F+I +T S+E+I  ++  ++K       VP++LVG K DL +  +T++ ++A +
Sbjct: 76  EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQAQD 132
Query: 154 VDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
              ++ S G           Y+E SAK  +G++  F   VR
Sbjct: 133 ---LARSYG---------IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 189

Iteration: 1
 Score = 77.4 bits (189), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 86/161 (53%), Gaps = 17/161 (10%)
Query: 36  KTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNT 95
           K+ L I   +N F  +Y PT+ D+Y   + +D +T  + + DTAGQE+Y  +R       
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 96  DCFLLCFSIGSTSSYENILSKWYPELKH--HCPKVPIILVGTKADLRSENKTIDKKKAAE 153
           + FL  F+I +T S+E+I  ++  ++K       VP++LVG K DL +  +T++ ++A +
Sbjct: 76  EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQAQD 132
Query: 154 VDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
              ++ S G           Y+E SAK  +G++  F   VR
Sbjct: 133 ---LARSYG---------IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp Length = 169

Iteration: 1
 Score = 77.4 bits (189), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 55/168 (32%), Positives = 87/168 (51%), Gaps = 18/168 (10%)
Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
           K+  +G   VGK+ L I   E +F   Y PT+ + +   ITV+ + Y + L DTAGQ++Y
Sbjct: 3   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEY 62
Query: 85  ERLRPMSYP-NTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKV--PIILVGTKADLRS 141
             + P +Y  + + ++L +S+ S  S+E ++   + +L     KV  PI+LVG K DL  
Sbjct: 63  S-IFPQTYSIDINGYILVYSVTSIKSFE-VIKVIHGKLLDMVGKVQIPIMLVGNKKDLHM 120
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVF 189
           E             ++S  +GK +     AA +LE SAK N+    VF
Sbjct: 121 ER------------VISYEEGKALAESWNAA-FLESSAKENQTAVDVF 155

>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of Ras Length = 166

Iteration: 1
 Score = 77.4 bits (189), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 85/162 (52%), Gaps = 17/162 (10%)
Query: 36  KTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNT 95
           K  L I   +N F  +Y PT+ D+Y   + +D +T  + + DTAGQE+Y  +R       
Sbjct: 16  KNALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 96  DCFLLCFSIGSTSSYENILSKWYPELKH--HCPKVPIILVGTKADLRSENKTIDKKKAAE 153
           + FL  F+I +T S+E+I  ++  ++K       VP++LVG K DL +  +T++ ++A +
Sbjct: 76  EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQAQD 132
Query: 154 VDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRS 195
              ++ S G           Y+E SAK  +G++  F   VR 
Sbjct: 133 ---LARSYG---------IPYIETSAKTRQGVEDAFYTLVRE 162

>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF Length = 166

Iteration: 1
 Score = 77.4 bits (189), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 86/161 (53%), Gaps = 17/161 (10%)
Query: 36  KTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNT 95
           K+ L I   +N F  +Y PT+ D+Y   + +D +T  + + DTAGQE+Y  +R       
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDEYMRTG 75
Query: 96  DCFLLCFSIGSTSSYENILSKWYPELKH--HCPKVPIILVGTKADLRSENKTIDKKKAAE 153
           + FL  F+I +T S+E+I  ++  ++K       VP++LVG K DL +  +T++ ++A +
Sbjct: 76  EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQAQD 132
Query: 154 VDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
              ++ S G           Y+E SAK  +G++  F   VR
Sbjct: 133 ---LARSYG---------IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 77.4 bits (189), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 86/161 (53%), Gaps = 17/161 (10%)
Query: 36  KTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNT 95
           K+ L I   +N F  +Y PT+ D+Y   + +D +T  + + DTAGQE+Y  +R       
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 96  DCFLLCFSIGSTSSYENILSKWYPELKH--HCPKVPIILVGTKADLRSENKTIDKKKAAE 153
           + FL  F+I +T S+E+I  ++  ++K       VP++LVG + DL +  +T++ ++A +
Sbjct: 76  EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNRCDLAA--RTVESRQAQD 132
Query: 154 VDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
              ++ S G           Y+E SAK  +G++  F   VR
Sbjct: 133 ---LARSYG---------IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = 204

Iteration: 1
 Score = 77.0 bits (188), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 81/175 (46%), Gaps = 17/175 (9%)
Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
            K+  VGDG  GKT  +  H   +F   YV T+  + +P     +       +WDTAGQE
Sbjct: 4   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 63
Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSE 142
            +  LR   Y    C ++ F + S  +Y+N+   W+ +L   C  +PI+L G K D++  
Sbjct: 64  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIK-- 120
Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV 197
               D+K  A+  +          RK K  +Y + SAK N   ++ F+   R  +
Sbjct: 121 ----DRKVKAKSIV--------FHRK-KNLQYYDISAKSNYNFEKPFLWLARKLI 162

>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras Length = 166

Iteration: 1
 Score = 77.0 bits (188), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 85/161 (52%), Gaps = 17/161 (10%)
Query: 36  KTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNT 95
           K+ L I   +N F   Y PT+ D+Y   + +D +T  + + DTAGQE+Y  +R       
Sbjct: 16  KSALTIQLIQNHFVEKYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 96  DCFLLCFSIGSTSSYENILSKWYPELKH--HCPKVPIILVGTKADLRSENKTIDKKKAAE 153
           + FL  F+I +T S+E+I  ++  ++K       VP++LVG K DL +  +T++ ++A +
Sbjct: 76  EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQAQD 132
Query: 154 VDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
              ++ S G           Y+E SAK  +G++  F   VR
Sbjct: 133 ---LARSYG---------IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp Length = 172

Iteration: 1
 Score = 77.0 bits (188), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 86/161 (53%), Gaps = 17/161 (10%)
Query: 36  KTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNT 95
           K+ L I   +N F  +Y P++ D+Y   + +D +T  + + DTAGQE+Y  +R       
Sbjct: 22  KSALTIQLIQNHFVDEYDPSIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 81
Query: 96  DCFLLCFSIGSTSSYENILSKWYPELKH--HCPKVPIILVGTKADLRSENKTIDKKKAAE 153
           + FL  F+I +T S+E+I  ++  ++K       VP++LVG K DL +  +T++ ++A +
Sbjct: 82  EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQAQD 138
Query: 154 VDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
              ++ S G           Y+E SAK  +G++  F   VR
Sbjct: 139 ---LARSYG---------IPYIETSAKTRQGVEDAFYTLVR 167

>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With The Ras-interacting Domain Of Ralgds Length = 167

Iteration: 1
 Score = 77.0 bits (188), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 85/161 (52%), Gaps = 17/161 (10%)
Query: 36  KTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNT 95
           K+ L I   +N F   Y PT+ D+Y   + +D +T  + + DTAGQE+Y  +R       
Sbjct: 16  KSALTIQLIQNHFVDKYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 96  DCFLLCFSIGSTSSYENILSKWYPELKH--HCPKVPIILVGTKADLRSENKTIDKKKAAE 153
           + FL  F+I +T S+E+I  ++  ++K       VP++LVG K DL +  +T++ ++A +
Sbjct: 76  EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQAQD 132
Query: 154 VDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
              ++ S G           Y+E SAK  +G++  F   VR
Sbjct: 133 ---LARSYG---------IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras- Binding-Domain Of C-Raf1 Kinase (Rafrbd) Length = 167

Iteration: 1
 Score = 77.0 bits (188), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 82/175 (46%), Gaps = 13/175 (7%)
Query: 22  KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
           +  K+  +G G VGK+ L +   +  F   Y PT+ D+Y   + VD +   + + DTAG 
Sbjct: 2   REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGT 61
Query: 82  EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELK-HHCPKVPIILVGTKADLR 140
           E +  +R +   N   F L +SI + S++ ++       L+      VP+ILVG K DL 
Sbjct: 62  EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE 121
Query: 141 SENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRS 195
            E             +V   QG+ + R+     +LE SAK    ++++F   VR 
Sbjct: 122 DER------------VVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQ 164

>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex Length = 216

Iteration: 1
 Score = 77.0 bits (188), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 79/175 (45%), Gaps = 17/175 (9%)
Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
            K+  VGDG  GKT  +  H   +F   YV T+  + +P     +       +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSE 142
            +  LR   Y    C ++ F + S  +Y+N+   W+ +L   C  +PI+L G K D++  
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV 197
                K KA  +            RK K  +Y + SAK N   ++ F+   R  +
Sbjct: 130 -----KVKAKSI---------VFHRK-KNLQYYDISAKSNYNFEKPFLWLARKLI 169

>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp Length = 221

Iteration: 1
 Score = 77.0 bits (188), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 81/175 (46%), Gaps = 17/175 (9%)
Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
            K+  VGDG  GKT  +  H   +F   YV T+  + +P     +       +WDTAGQE
Sbjct: 16  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSE 142
            +  LR   Y    C ++ F + S  +Y+N+   W+ +L   C  +PI+L G K D++  
Sbjct: 76  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIK-- 132
Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV 197
               D+K  A+  +          RK K  +Y + SAK N   ++ F+   R  +
Sbjct: 133 ----DRKVKAKSIV--------FHRK-KNLQYYDISAKSNYNFEKPFLWLARKLI 174

>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt The Gtp- Bound Conformation: Implications For Nuclear Import Complex Assembly Dynamics Length = 216

Iteration: 1
 Score = 77.0 bits (188), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 81/175 (46%), Gaps = 17/175 (9%)
Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
            K+  VGDG  GKT  +  H   +F   YV T+  + +P     +       +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSE 142
            +  LR   Y    C ++ F + S  +Y+N+   W+ +L   C  +PI+L G K D++  
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIK-- 127
Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV 197
               D+K  A+  +          RK K  +Y + SAK N   ++ F+   R  +
Sbjct: 128 ----DRKVKAKSIV--------FHRK-KNLQYYDISAKSNYNFEKPFLWLARKLI 169

>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser (T35s) Complexed With Guanosine-5'-[b,G-Imido] Triphosphate Length = 166

Iteration: 1
 Score = 77.0 bits (188), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 86/161 (53%), Gaps = 17/161 (10%)
Query: 36  KTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNT 95
           K+ L I   +N F  +Y P++ D+Y   + +D +T  + + DTAGQE+Y  +R       
Sbjct: 16  KSALTIQLIQNHFVDEYDPSIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 96  DCFLLCFSIGSTSSYENILSKWYPELKH--HCPKVPIILVGTKADLRSENKTIDKKKAAE 153
           + FL  F+I +T S+E+I  ++  ++K       VP++LVG K DL +  +T++ ++A +
Sbjct: 76  EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQAQD 132
Query: 154 VDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
              ++ S G           Y+E SAK  +G++  F   VR
Sbjct: 133 ---LARSYG---------IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase Length = 166

Iteration: 1
 Score = 76.6 bits (187), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 86/161 (53%), Gaps = 17/161 (10%)
Query: 36  KTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNT 95
           K+ L I   +N F  ++ PT+ D+Y   + +D +T  + + DTAGQE+Y  +R       
Sbjct: 16  KSALTIQLIQNHFVDEFDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 96  DCFLLCFSIGSTSSYENILSKWYPELKH--HCPKVPIILVGTKADLRSENKTIDKKKAAE 153
           + FL  F+I +T S+E+I  ++  ++K       VP++LVG K DL +  +T++ ++A +
Sbjct: 76  EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQAQD 132
Query: 154 VDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
              ++ S G           Y+E SAK  +G++  F   VR
Sbjct: 133 ---LARSYG---------IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form Length = 166

Iteration: 1
 Score = 76.6 bits (187), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 85/161 (52%), Gaps = 17/161 (10%)
Query: 36  KTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNT 95
           K+ L I   +N F  +Y PT+ D+Y   + +D +T  + + DT GQE+Y  +R       
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTGGQEEYSAMRDQYMRTG 75
Query: 96  DCFLLCFSIGSTSSYENILSKWYPELKH--HCPKVPIILVGTKADLRSENKTIDKKKAAE 153
           + FL  F+I +T S+E+I  ++  ++K       VP++LVG K DL +  +T++ ++A +
Sbjct: 76  EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQAQD 132
Query: 154 VDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
              ++ S G           Y+E SAK  +G++  F   VR
Sbjct: 133 ---LARSYG---------IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3 Length = 172

Iteration: 1
 Score = 76.6 bits (187), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 44/119 (36%), Positives = 61/119 (51%), Gaps = 3/119 (2%)
Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYP-DTITVDNKTYDVTLWDTAGQE 82
            KV  +GD  VGK+ LL   T N+F  +   T+   +   +I VD KT    +WDTAG E
Sbjct: 9   FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 68
Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLR 140
            Y  +    Y      LL + I    +YEN+  +W  EL+ H    + I+LVG K+DLR
Sbjct: 69  RYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLR 126

>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear Transport Complex Length = 216

Iteration: 1
 Score = 76.6 bits (187), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 81/175 (46%), Gaps = 17/175 (9%)
Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
            K+  VGDG  GKT  +  H   +F   YV T+  + +P     +       +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSE 142
            +  LR   Y    C ++ F + S  +Y+N+   W+ +L   C  +PI+L G K D++  
Sbjct: 71  KFGGLRDGYYIQAQCAIIXFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIK-- 127
Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV 197
               D+K  A+  +          RK K  +Y + SAK N   ++ F+   R  +
Sbjct: 128 ----DRKVKAKSIV--------FHRK-KNLQYYDISAKSNYNFEKPFLWLARKLI 169

>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g Length = 166

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 85/161 (52%), Gaps = 17/161 (10%)
Query: 36  KTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNT 95
           K+ L I   +N F  +Y PT+ D+Y   + +D +T  + + DTAG E+Y  +R       
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETXLLDILDTAGGEEYSAMRDQYMRTG 75
Query: 96  DCFLLCFSIGSTSSYENILSKWYPELKH--HCPKVPIILVGTKADLRSENKTIDKKKAAE 153
           + FL  F+I +T S+E+I  ++  ++K       VP++LVG K DL +  +T++ ++A +
Sbjct: 76  EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQAQD 132
Query: 154 VDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
              ++ S G           Y+E SAK  +G++  F   VR
Sbjct: 133 ---LARSYG---------IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant Length = 167

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 85/161 (52%), Gaps = 17/161 (10%)
Query: 36  KTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNT 95
           K+ L I   +N F  +Y PT+ D+Y   + +D +T  + + DTA QE+Y  +R       
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAAQEEYSAMRDQYMRTG 75
Query: 96  DCFLLCFSIGSTSSYENILSKWYPELKH--HCPKVPIILVGTKADLRSENKTIDKKKAAE 153
           + FL  F+I +T S+E+I  ++  ++K       VP++LVG K DL +  +T++ ++A +
Sbjct: 76  EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKXDLAA--RTVESRQAQD 132
Query: 154 VDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
              ++ S G           Y+E SAK  +G++  F   VR
Sbjct: 133 ---LARSYG---------IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 86/161 (53%), Gaps = 17/161 (10%)
Query: 36  KTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNT 95
           K+ L I   +N F  +Y PT+ ++Y   + +D +T  + + DTAGQE+Y  +R       
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEESYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 96  DCFLLCFSIGSTSSYENILSKWYPELKH--HCPKVPIILVGTKADLRSENKTIDKKKAAE 153
           + FL  F+I +T S+E+I  ++  ++K       VP++LVG K DL +  +T++ ++A +
Sbjct: 76  EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQAQD 132
Query: 154 VDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
              ++ S G           Y+E SAK  +G++  F   VR
Sbjct: 133 ---LARSYG---------IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By Isoleucine Length = 166

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 85/161 (52%), Gaps = 17/161 (10%)
Query: 36  KTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNT 95
           K+ L I   +N F  +Y PT+ D+Y   + +D +   + + DTAGQE+Y  +R       
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGEICLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 96  DCFLLCFSIGSTSSYENILSKWYPELKH--HCPKVPIILVGTKADLRSENKTIDKKKAAE 153
           + FL  F+I +T S+E+I  ++  ++K       VP++LVG K DL +  +T++ ++A +
Sbjct: 76  EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQAQD 132
Query: 154 VDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
              ++ S G           Y+E SAK  +G++  F   VR
Sbjct: 133 ---LARSYG---------IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a Mutant Length = 166

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 85/161 (52%), Gaps = 17/161 (10%)
Query: 36  KTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNT 95
           K+ L I   +N F  +Y PT+ D+Y   + +D +T  + + DTA QE+Y  +R       
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAAQEEYSAMRDQYMRTG 75
Query: 96  DCFLLCFSIGSTSSYENILSKWYPELKH--HCPKVPIILVGTKADLRSENKTIDKKKAAE 153
           + FL  F+I +T S+E+I  ++  ++K       VP++LVG K DL +  +T++ ++A +
Sbjct: 76  EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKXDLAA--RTVESRQAQD 132
Query: 154 VDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
              ++ S G           Y+E SAK  +G++  F   VR
Sbjct: 133 ---LARSYG---------IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp Length = 166

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 86/161 (53%), Gaps = 17/161 (10%)
Query: 36  KTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNT 95
           K+ L I   +N F  +Y PT+ D+Y   + +D +T  + + DTAG+E+Y  +R       
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGKEEYSAMRDQYMRTG 75
Query: 96  DCFLLCFSIGSTSSYENILSKWYPELKH--HCPKVPIILVGTKADLRSENKTIDKKKAAE 153
           + FL  F+I +T S+E+I  ++  ++K       VP++LVG K DL +  +T++ ++A +
Sbjct: 76  EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQAQD 132
Query: 154 VDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
              ++ S G           Y+E SAK  +G++  F   VR
Sbjct: 133 ---LARSYG---------IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 75.9 bits (185), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 85/161 (52%), Gaps = 17/161 (10%)
Query: 36  KTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNT 95
           K+ L I   +N F  +Y PT+ D+Y   + +D +T  + + DTAG E+Y  +R       
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGHEEYSAMRDQYMRTG 75
Query: 96  DCFLLCFSIGSTSSYENILSKWYPELKH--HCPKVPIILVGTKADLRSENKTIDKKKAAE 153
           + FL  F+I +T S+E+I  ++  ++K       VP++LVG K DL +  +T++ ++A +
Sbjct: 76  EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQAQD 132
Query: 154 VDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
              ++ S G           Y+E SAK  +G++  F   VR
Sbjct: 133 ---LARSYG---------IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 75.9 bits (185), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 85/161 (52%), Gaps = 17/161 (10%)
Query: 36  KTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNT 95
           K+ L I   +N F  +Y PT+ D+Y   + +D +T  + + DT GQE+Y  +R       
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTTGQEEYSAMRDQYMRTG 75
Query: 96  DCFLLCFSIGSTSSYENILSKWYPELKH--HCPKVPIILVGTKADLRSENKTIDKKKAAE 153
           + FL  F+I +T S+E+I  ++  ++K       VP++LVG K DL +  +T++ ++A +
Sbjct: 76  EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQAQD 132
Query: 154 VDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
              ++ S G           Y+E SAK  +G++  F   VR
Sbjct: 133 ---LARSYG---------IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex With Gtpgammas Length = 191

Iteration: 1
 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/119 (36%), Positives = 61/119 (51%), Gaps = 3/119 (2%)
Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYP-DTITVDNKTYDVTLWDTAGQE 82
            KV  +GD  VGK+ LL   T N+F  +   T+   +   +I VD KT    +WDTAG E
Sbjct: 30  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 89
Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLR 140
            Y  +    Y      LL + I    +YEN+  +W  EL+ H    + I+LVG K+DLR
Sbjct: 90  RYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLR 147

>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex Length = 172

Iteration: 1
 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 79/172 (45%), Gaps = 17/172 (9%)
Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
            K+  VGDG  GKT  +  H   +F   Y+ T+  + +P +   +       +WDTAG E
Sbjct: 6   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 65
Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSE 142
            +  LR   Y N  C ++ F + S  +Y+N+   W+ +L   C  +PI+L G K D++  
Sbjct: 66  KFGGLRDGYYINAQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDVKER 124
Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
                K KA  +            RK K  +Y + SAK N   ++ F+   R
Sbjct: 125 -----KVKAKTITF---------HRK-KNLQYYDISAKSNYNFEKPFLWLAR 161

>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue Length = 201

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 87/169 (51%), Gaps = 16/169 (9%)
Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
            K+  +G+  VGKTCL+   T+  FP     T+  D    T+ ++ +   + +WDTAGQE
Sbjct: 27  FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE 86
Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCP-KVPIILVGTKADLRS 141
            +  +    Y + +  +L + I    S+   L +W  E++ +   KV  +LVG K DL +
Sbjct: 87  RFRSITQSYYRSANALILTYDITCEESF-RCLPEWLREIEQYASNKVITVLVGNKIDL-A 144
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFI 190
           E + + +++A E      S+ + M        YLE SAK ++ ++++F+
Sbjct: 145 ERREVSQQRAEEF-----SEAQDMY-------YLETSAKESDNVEKLFL 181

>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1 Length = 169

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/180 (27%), Positives = 83/180 (46%), Gaps = 23/180 (12%)
Query: 22  KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
           +  K+  +G   VGK+ L +   +  F   Y PT+ D+Y   + VD +   + + DTAG 
Sbjct: 4   REYKLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGT 63
Query: 82  EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPK------VPIILVGT 135
           E +  +R +   N   F L +SI + S++ ++      +L+    +      VP+ILVG 
Sbjct: 64  EQFTAMRDLYMKNGQGFALVYSITAQSTFNDL-----QDLREQILRVKDTDDVPMILVGN 118
Query: 136 KADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRS 195
           K DL  E             +V   QG+ + R+     +LE SAK    ++++F   VR 
Sbjct: 119 KCDLEDER------------VVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQ 166

>pdb|3ICQ|B Chain B, Karyopherin Nuclear State Length = 171

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 79/172 (45%), Gaps = 17/172 (9%)
Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
            K+  VGDG  GKT  +  H   +F   Y+ T+  + +P +   +       +WDTAG E
Sbjct: 5   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 64
Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSE 142
            +  LR   Y N  C ++ F + S  +Y+N+   W+ +L   C  +PI+L G K D++  
Sbjct: 65  KFGGLRDGYYINAQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDVKER 123
Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
                K KA  +            RK K  +Y + SAK N   ++ F+   R
Sbjct: 124 -----KVKAKTITF---------HRK-KNLQYYDISAKSNYNFEKPFLWLAR 160

>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And Inorganic Phosphate Length = 172

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 79/167 (47%), Gaps = 15/167 (8%)
Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
           +V   G G VGK+ L++   +  F   Y+PTV D Y   I+ D     + + DT G   +
Sbjct: 5   RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQF 64
Query: 85  ERLRPMSYPNTDCFLLCFSIGSTSSYENI--LSKWYPELKHHCPKVPIILVGTKADLRSE 142
             ++ +S      F+L +SI S  S E +  + +   E+K     +PI+LVG K D    
Sbjct: 65  PAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPS 124
Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVF 189
            +            V +S+ + + R  K A ++E SAKLN  + ++F
Sbjct: 125 RE------------VQSSEAEALARTWKCA-FMETSAKLNHNVKELF 158

>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex Length = 182

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 80/175 (45%), Gaps = 17/175 (9%)
Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
            K+  VGDG  GKT  +  H   +F   YV T+  + +P     +       +WDTAG E
Sbjct: 13  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 72
Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSE 142
            +  LR   Y    C ++ F + S  +Y+N+   W+ +L   C  +PI+L G K D++  
Sbjct: 73  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIK-- 129
Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV 197
               D+K  A+  +          RK K  +Y + SAK N   ++ F+   R  +
Sbjct: 130 ----DRKVKAKSIV--------FHRK-KNLQYYDISAKSNYNFEKPFLWLARKLI 171

>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab- Binding Domain Length = 167

Iteration: 1
 Score = 75.1 bits (183), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/119 (36%), Positives = 60/119 (50%), Gaps = 3/119 (2%)
Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPD-TITVDNKTYDVTLWDTAGQE 82
            KV  +GD  VGK+ LL   T N+F  +   T+   +   +I VD KT    +WDTAG E
Sbjct: 6   FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 65
Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLR 140
            Y  +    Y      LL + I    +YEN+  +W  EL+ H    + I LVG K+DLR
Sbjct: 66  RYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIXLVGNKSDLR 123

>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form Length = 166

Iteration: 1
 Score = 75.1 bits (183), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 85/161 (52%), Gaps = 17/161 (10%)
Query: 36  KTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNT 95
           K+ L I   +N F  +Y PT+ D+Y   + +D +T  + + DTAG E+Y  +R       
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGGEEYSAMRDQYMRTG 75
Query: 96  DCFLLCFSIGSTSSYENILSKWYPELKH--HCPKVPIILVGTKADLRSENKTIDKKKAAE 153
           + FL  F+I +T S+E+I  ++  ++K       VP++LVG K DL +  +T++ ++A +
Sbjct: 76  EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQAQD 132
Query: 154 VDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
              ++ S G           Y+E SAK  +G++  F   VR
Sbjct: 133 ---LARSYG---------IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound Forms Length = 167

Iteration: 1
 Score = 75.1 bits (183), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 88/171 (51%), Gaps = 18/171 (10%)
Query: 22  KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
           K+ K+  +G   VGK+ L I   E +F     PT+ + +   ITV+ + Y + L DTAGQ
Sbjct: 3   KSRKIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTFTKLITVNGQEYHLQLVDTAGQ 62
Query: 82  EDYERLRPMSYP-NTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKV--PIILVGTKAD 138
           ++Y  + P +Y  + + ++L +S+ S  S+E ++   + +L     KV  PI+LVG K D
Sbjct: 63  DEYS-IFPQTYSIDINGYILVYSVTSIKSFE-VIKVIHGKLLDMVGKVQIPIMLVGNKKD 120
Query: 139 LRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVF 189
           L  E             ++S  +GK +     AA +LE SAK N+    VF
Sbjct: 121 LHMER------------VISYEEGKALAESWNAA-FLESSAKENQTAVDVF 158

>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear Export Complex Length = 176

Iteration: 1
 Score = 75.1 bits (183), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 80/175 (45%), Gaps = 17/175 (9%)
Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
            K+  VGDG  GKT  +  H   +F   YV T+  + +P     +       +WDTAG E
Sbjct: 7   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 66
Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSE 142
            +  LR   Y    C ++ F + S  +Y+N+   W+ +L   C  +PI+L G K D++  
Sbjct: 67  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIK-- 123
Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV 197
               D+K  A+  +          RK K  +Y + SAK N   ++ F+   R  +
Sbjct: 124 ----DRKVKAKSIV--------FHRK-KNLQYYDISAKSNYNFEKPFLWLARKLI 165

>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2 Length = 173

Iteration: 1
 Score = 75.1 bits (183), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 44/119 (36%), Positives = 60/119 (50%), Gaps = 3/119 (2%)
Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYP-DTITVDNKTYDVTLWDTAGQE 82
            KV  +GD  VGK+ LL   T N+F  +   T+   +   +I VD KT    +WDTAG E
Sbjct: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 71
Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLR 140
            Y  +    Y      LL + I    +YEN+  +W  EL+ H    + I LVG K+DLR
Sbjct: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIXLVGNKSDLR 129

>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras P21 In Complex With Gppnhp Length = 166

Iteration: 1
 Score = 75.1 bits (183), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 86/161 (53%), Gaps = 17/161 (10%)
Query: 36  KTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNT 95
           K+ L I   +N F  +  PT+ D+Y   + +D +T  + + DTAGQE+Y  +R       
Sbjct: 16  KSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 96  DCFLLCFSIGSTSSYENILSKWYPELKH--HCPKVPIILVGTKADLRSENKTIDKKKAAE 153
           + FL  F+I +T S+E+I  ++  ++K       VP++LVG K+DL +  +T++ ++A +
Sbjct: 76  EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKSDLAA--RTVESRQAQD 132
Query: 154 VDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
              ++ S G           Y+E SAK  +G++  F   VR
Sbjct: 133 ---LARSYG---------IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 75.1 bits (183), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 85/161 (52%), Gaps = 17/161 (10%)
Query: 36  KTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNT 95
           K+ L I   +N F  +Y PT+ D+Y   + +D +T  + + DTAG E+Y  +R       
Sbjct: 21  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGLEEYSAMRDQYMRTG 80
Query: 96  DCFLLCFSIGSTSSYENILSKWYPELKH--HCPKVPIILVGTKADLRSENKTIDKKKAAE 153
           + FL  F+I +T S+E+I  ++  ++K       VP++LVG K DL +  +T++ ++A +
Sbjct: 81  EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQAQD 137
Query: 154 VDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
              ++ S G           Y+E SAK  +G++  F   VR
Sbjct: 138 ---LARSYG---------IPYIETSAKTRQGVEDAFYTLVR 166

>pdb|1VG1|A Chain A, Gdp-bound Rab7 Length = 185

Iteration: 1
 Score = 75.1 bits (183), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 86/183 (46%), Gaps = 20/183 (10%)
Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
           LKV  +GD  VGKT L+  +   KF   Y  T+  D     + VD++   + +WDTAGQE
Sbjct: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 68
Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPE-LKHHCPK----VPIILVGTKA 137
            ++ L    Y   DC +L F + + ++++  L  W  E L    P+     P +++G K 
Sbjct: 69  RFQSLGVAFYRGADCCVLVFDVTAPNTFKT-LDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 138 DLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV 197
           DL  EN+ +  K+A        +             Y E SAK    ++Q F    R+A+
Sbjct: 128 DL--ENRQVATKRAQAWCYSKNN-----------IPYFETSAKEAINVEQAFQTIARNAL 174
Query: 198 KKQ 200
           K++
Sbjct: 175 KQE 177

>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 75.1 bits (183), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 85/161 (52%), Gaps = 17/161 (10%)
Query: 36  KTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNT 95
           K+ L I   +N F  +Y PT+ D+Y   + +D +T  + + DTAG E+Y  +R       
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGLEEYSAMRDQYMRTG 75
Query: 96  DCFLLCFSIGSTSSYENILSKWYPELKH--HCPKVPIILVGTKADLRSENKTIDKKKAAE 153
           + FL  F+I +T S+E+I  ++  ++K       VP++LVG K DL +  +T++ ++A +
Sbjct: 76  EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQAQD 132
Query: 154 VDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
              ++ S G           Y+E SAK  +G++  F   VR
Sbjct: 133 ---LARSYG---------IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp Length = 166

Iteration: 1
 Score = 75.1 bits (183), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 85/161 (52%), Gaps = 17/161 (10%)
Query: 36  KTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNT 95
           K+ L I   +N F  +Y PT+ D+Y   + +D +T  + + DTAG E+Y  +R       
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGVEEYSAMRDQYMRTG 75
Query: 96  DCFLLCFSIGSTSSYENILSKWYPELKH--HCPKVPIILVGTKADLRSENKTIDKKKAAE 153
           + FL  F+I +T S+E+I  ++  ++K       VP++LVG K DL +  +T++ ++A +
Sbjct: 76  EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQAQD 132
Query: 154 VDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
              ++ S G           Y+E SAK  +G++  F   VR
Sbjct: 133 ---LARSYG---------IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of The Ras-specific Nucleotide Exchange Factor Sos Length = 166

Iteration: 1
 Score = 74.7 bits (182), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 85/161 (52%), Gaps = 17/161 (10%)
Query: 36  KTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNT 95
           K+ L I   +N F  +Y PT+ D+Y   + +D +T  + + DTAGQE+   +R       
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEASAMRDQYMRTG 75
Query: 96  DCFLLCFSIGSTSSYENILSKWYPELKH--HCPKVPIILVGTKADLRSENKTIDKKKAAE 153
           + FL  F+I +T S+E+I  ++  ++K       VP++LVG K DL +  +T++ ++A +
Sbjct: 76  EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQAQD 132
Query: 154 VDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
              ++ S G           Y+E SAK  +G++  F   VR
Sbjct: 133 ---LARSYG---------IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp Length = 195

Iteration: 1
 Score = 74.7 bits (182), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 88/184 (47%), Gaps = 18/184 (9%)
Query: 18  KSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLW 76
           + V   LK+  +G+  VGK+ LL+  T++ F  +   T+  D    TI+VD     + +W
Sbjct: 10  EDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIW 69
Query: 77  DTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPII--LVG 134
           DTAGQE +  L P  Y      +L + +    ++   L  W  EL+ +C +  I+  LVG
Sbjct: 70  DTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVK-LDNWLNELETYCTRNDIVNXLVG 128
Query: 135 TKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
            K D   EN+ +D+           ++G K  RK  +  ++E SAK  +G+   F   V 
Sbjct: 129 NKID--KENREVDR-----------NEGLKFARK-HSXLFIEASAKTCDGVQCAFEELVE 174
Query: 195 SAVK 198
             ++
Sbjct: 175 KIIQ 178

>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1 Length = 201

Iteration: 1
 Score = 74.7 bits (182), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 55/188 (29%), Positives = 90/188 (47%), Gaps = 23/188 (12%)
Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
           KV  +G   VGKT L     E +F   Y PTV + Y   +T+    + + L DTAGQ++Y
Sbjct: 26  KVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEY 85
Query: 85  ERLRPMSY-PNTDCFLLCFSIGSTSSYENILSKWYPELK--HHCPKVPIILVGTKADLRS 141
             L P S+      ++L +S+ S  S++ ++   Y +L   H   +VP++LVG KADL  
Sbjct: 86  SIL-PYSFIIGVHGYVLVYSVTSLHSFQ-VIESLYQKLHEGHGKTRVPVVLVGNKADLSP 143
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVK--- 198
           E +            V   +GKK+      A ++E SA+ N+    +F   ++   +   
Sbjct: 144 ERE------------VQAVEGKKLAESW-GATFMESSARENQLTQGIFTKVIQEIARVEN 190
Query: 199 --KQDKSC 204
              Q++ C
Sbjct: 191 SYGQERRC 198

>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex With Monoprenylated Rab7 Protein Length = 207

Iteration: 1
 Score = 74.7 bits (182), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 86/183 (46%), Gaps = 20/183 (10%)
Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
           LKV  +GD  VGKT L+  +   KF   Y  T+  D     + VD++   + +WDTAGQE
Sbjct: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 68
Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPE-LKHHCPK----VPIILVGTKA 137
            ++ L    Y   DC +L F + + ++++  L  W  E L    P+     P +++G K 
Sbjct: 69  RFQSLGVAFYRGADCCVLVFDVTAPNTFKT-LDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 138 DLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV 197
           DL  EN+ +  K+A        +             Y E SAK    ++Q F    R+A+
Sbjct: 128 DL--ENRQVATKRAQAWCYSKNN-----------IPYFETSAKEAINVEQAFQTIARNAL 174
Query: 198 KKQ 200
           K++
Sbjct: 175 KQE 177

>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp Length = 190

Iteration: 1
 Score = 74.7 bits (182), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 83/161 (51%), Gaps = 17/161 (10%)
Query: 36  KTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNT 95
           K+ L I   +N F  +Y PT+ D+Y   + +D +T  + + DTAGQE+Y  +R       
Sbjct: 34  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 93
Query: 96  DCFLLCFSIGSTSSYENILSKWYPELKH--HCPKVPIILVGTKADLRSENKTIDKKKAAE 153
           + FL  F+I ++ S+ +I + +  ++K       VP++LVG K DL +  +T+D K+A E
Sbjct: 94  EGFLCVFAINNSKSFADI-NLYREQIKRVKDSDDVPMVLVGNKCDLPT--RTVDTKQAHE 150
Query: 154 VDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
           +             K     ++E SAK  +G++  F   VR
Sbjct: 151 L------------AKSYGIPFIETSAKTRQGVEDAFYTLVR 179

>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp Length = 166

Iteration: 1
 Score = 74.7 bits (182), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 85/161 (52%), Gaps = 17/161 (10%)
Query: 36  KTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNT 95
           K+ L I   +N F  +Y PT+ D+Y   + +D +T  + + DTAG E+Y  +R       
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGIEEYSAMRDQYMRTG 75
Query: 96  DCFLLCFSIGSTSSYENILSKWYPELKH--HCPKVPIILVGTKADLRSENKTIDKKKAAE 153
           + FL  F+I +T S+E+I  ++  ++K       VP++LVG K DL +  +T++ ++A +
Sbjct: 76  EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQAQD 132
Query: 154 VDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
              ++ S G           Y+E SAK  +G++  F   VR
Sbjct: 133 ---LARSYG---------IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175

Iteration: 1
 Score = 74.7 bits (182), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 86/168 (51%), Gaps = 16/168 (9%)
Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
            K+  +GD  VGK+CLL+   ++ +   Y+ T+  D    TI+++NKT  + +WDTAGQE
Sbjct: 10  FKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAGQE 69
Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPEL-KHHCPKVPIILVGTKADLRS 141
            +  +    Y      ++ + +    S++N+  +W  E+ ++    V  +LVG K DL S
Sbjct: 70  RFRTITSSYYRGAHGIIIVYDVTDRDSFDNV-KQWIQEIDRYAMENVNKLLVGNKCDLVS 128
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVF 189
           +             +V++ +G+++       +++E SAK    ++Q F
Sbjct: 129 KR------------VVTSDEGRELADS-HGIKFIETSAKNAYNVEQAF 163

>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant Length = 216

Iteration: 1
 Score = 74.3 bits (181), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 80/175 (45%), Gaps = 17/175 (9%)
Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
            K+  VGDG  GKT  +  H   +F   YV T+  + +P     +       +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSE 142
            +  L    Y    C ++ F + S  +Y+N+   W+ +L   C  +PI+L G K D++  
Sbjct: 71  KFGGLEDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIK-- 127
Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV 197
               D+K  A+  +          RK K  +Y + SAK N   ++ F+   R  +
Sbjct: 128 ----DRKVKAKSIV--------FHRK-KNLQYYDISAKSNYNFEKPFLWLARKLI 169

>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp) Length = 219

Iteration: 1
 Score = 74.3 bits (181), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 79/172 (45%), Gaps = 17/172 (9%)
Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
            K+  VGDG  GKT  +  H   +F   Y+ T+  + +P +   +       +WDTAG E
Sbjct: 13  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 72
Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSE 142
            +  LR   Y N  C ++ F + S  +Y+N+   W+ +L   C  +PI+L G K D++  
Sbjct: 73  KFGGLRDGYYINAQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDVKER 131
Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
                K KA  +            RK K  +Y + SAK N   ++ F+   R
Sbjct: 132 -----KVKAKTI---------TFHRK-KNLQYYDISAKSNYNFEKPFLWLAR 168

>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175

Iteration: 1
 Score = 73.9 bits (180), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 89/179 (49%), Gaps = 17/179 (9%)
Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
            K+  +GD  VGK+CLL+   ++ +   Y+ T+  D    TI +D KT  + +WDTAGQE
Sbjct: 10  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 69
Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPEL-KHHCPKVPIILVGTKADLRS 141
            +  +    Y      ++ + +    SY N+  +W  E+ ++    V  +LVG K+DL +
Sbjct: 70  RFRTITSSYYRGAHGIIVVYDVTDQESYANV-KQWLQEIDRYASENVNKLLVGNKSDLTT 128
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQ 200
           + K +D   A E    + S G           +LE SAK    ++Q F+  + + +KK+
Sbjct: 129 K-KVVDNTTAKE---FADSLG---------IPFLETSAKNATNVEQAFM-TMAAEIKKR 173

>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181

Iteration: 1
 Score = 73.9 bits (180), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 89/179 (49%), Gaps = 17/179 (9%)
Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
            K+  +GD  VGK+CLL+   ++ +   Y+ T+  D    TI +D KT  + +WDTAGQE
Sbjct: 10  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 69
Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPEL-KHHCPKVPIILVGTKADLRS 141
            +  +    Y      ++ + +    SY N+  +W  E+ ++    V  +LVG K+DL +
Sbjct: 70  RFRTITSSYYRGAHGIIVVYDVTDQESYANV-KQWLQEIDRYASENVNKLLVGNKSDLTT 128
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQ 200
           + K +D   A E    + S G           +LE SAK    ++Q F+  + + +KK+
Sbjct: 129 K-KVVDNTTAKE---FADSLG---------IPFLETSAKNATNVEQAFM-TMAAEIKKR 173

>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant Length = 216

Iteration: 1
 Score = 73.9 bits (180), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 78/175 (44%), Gaps = 17/175 (9%)
Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
            K+  VGDG  GKT  +  H   +F   YV T+  + +P     +       +WDTAG E
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 70
Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSE 142
            +  LR   Y    C ++ F + S  +Y+N+   W+ +L   C  +PI+L G K D++  
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV 197
                K KA  +            RK K  +Y + SAK N   ++ F+   R  +
Sbjct: 130 -----KVKAKSI---------VFHRK-KNLQYYDISAKSNYNFEKPFLWLARKLI 169

>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp Length = 217

Iteration: 1
 Score = 73.6 bits (179), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 46/144 (31%), Positives = 76/144 (52%), Gaps = 15/144 (10%)
Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDN---------KTYDV- 73
           +K+  +GD  VGKT  L  +T+NKF   ++ TV  ++ +   V N         K + V 
Sbjct: 26  IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 85
Query: 74  -TLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELK--HHCPKVPI 130
             LWDTAGQE +  L    + +   FLL F + S  S+ N+   W  +L+   +C    I
Sbjct: 86  LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNV-RNWMSQLQANAYCENPDI 144
Query: 131 ILVGTKADLRSENKTIDKKKAAEV 154
           +L+G KADL  + + +++++A E+
Sbjct: 145 VLIGNKADL-PDQREVNERQAREL 167

>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7 Length = 207

Iteration: 1
 Score = 73.6 bits (179), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 85/183 (46%), Gaps = 20/183 (10%)
Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
           LKV  +GD  VGKT L+  +   KF   Y  T+  D     + VD++   + +WDTAGQE
Sbjct: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 68
Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPE-LKHHCPK----VPIILVGTKA 137
            ++ L    Y   DC +L F + + ++++  L  W  E L    P+     P +++G K 
Sbjct: 69  RFQSLGVAFYRGADCCVLVFDVTAPNTFKT-LDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 138 DLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV 197
           D   EN+ +  K+A        +             Y E SAK    ++Q F    R+A+
Sbjct: 128 DF--ENRQVATKRAQAWCYSKNN-----------IPYFETSAKEAINVEQAFQTIARNAL 174
Query: 198 KKQ 200
           K++
Sbjct: 175 KQE 177

>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169

Iteration: 1
 Score = 73.2 bits (178), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 80/168 (47%), Gaps = 16/168 (9%)
Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
            K+  +G+  VGKT  L  + ++ F   +V TV  D    TI  ++K   + +WDTAGQE
Sbjct: 6   FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQE 65
Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELK-HHCPKVPIILVGTKADLRS 141
            Y  +    Y     F+L + I +  S+ N +  W  ++K +      ++LVG K D+  
Sbjct: 66  RYRTITTAYYRGAMGFILMYDITNEESF-NAVQDWSTQIKTYSWDNAQVLLVGNKCDMED 124
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVF 189
           E             +VS+ +G+++   +   E+ E SAK N  + Q F
Sbjct: 125 ER------------VVSSERGRQLADHL-GFEFFEASAKDNINVKQTF 159

>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex Length = 221

Iteration: 1
 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 80/175 (45%), Gaps = 17/175 (9%)
Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
            K+  VGDG  GKT  +  H   +    YV T+  + +P     +       +WDTAGQE
Sbjct: 16  FKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSE 142
            +  LR   Y    C ++ F + S  +Y+N+   W+ +L   C  +PI+L G K D++  
Sbjct: 76  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIK-- 132
Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV 197
               D+K  A+  +          RK K  +Y + SAK N   ++ F+   R  +
Sbjct: 133 ----DRKVKAKSIV--------FHRK-KNLQYYDISAKSNYNFEKPFLWLARKLI 174

>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp Length = 199

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/136 (33%), Positives = 69/136 (50%), Gaps = 3/136 (2%)
Query: 16  KSKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVT 74
           KS S  KA K+   GD  VGK+  L+   +N+F  +   T+  D    T+ VD +   + 
Sbjct: 21  KSFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQ 80
Query: 75  LWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPK-VPIILV 133
           LWDTAGQE +  +    +   D  LL + +    S+ NI  +W   ++    + VPI+LV
Sbjct: 81  LWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNI-REWVDMIEDAAHETVPIMLV 139
Query: 134 GTKADLRSENKTIDKK 149
           G KAD+R    T  +K
Sbjct: 140 GNKADIRDTAATEGQK 155

>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 87/184 (47%), Gaps = 17/184 (9%)
Query: 23  ALKVTTVGDGMVGKTCLLITHTENKFPTD-YVPTVFDNYPDTIT-VDNKTYDVTLWDTAG 80
           A KV  VGD  VGKTCLL+   +  F    ++ TV  ++ + +  VD     + +WDTAG
Sbjct: 10  AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAG 69
Query: 81  QEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPK-VPIILVGTKADL 139
           QE +  +    Y +    LL + + + +S++NI   W  E+  +    V ++L+G K D 
Sbjct: 70  QERFRSVTHAYYRDAHALLLLYDVTNKASFDNI-QAWLTEIHEYAQHDVALMLLGNKVD- 127
Query: 140 RSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKK 199
                      +A   +V    G+K+ ++     ++E SAK    +D  F A  +   ++
Sbjct: 128 -----------SAHERVVKREDGEKLAKEY-GLPFMETSAKTGLNVDLAFTAIAKELKRR 175
Query: 200 QDKS 203
             K+
Sbjct: 176 SMKA 179

>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 78/167 (46%), Gaps = 15/167 (8%)
Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
            K+  +GD  VGK+ LL+   +N F   Y+ T+  D    T+ ++ +   + +WDTAGQE
Sbjct: 10  FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQE 69
Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSE 142
            +  +    Y  T   ++ + + S  S+ N+  +W  E+  +C  V  ILVG K D    
Sbjct: 70  RFRTITSTYYRGTHGVIVVYDVTSAESFVNV-KRWLHEINQNCDDVCRILVGNKND---- 124
Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVF 189
                     E  +V T    K   ++   +  E SAK N  ++++F
Sbjct: 125 --------DPERKVVETEDAYKFAGQM-GIQLFETSAKENVNVEEMF 162

>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 170

Iteration: 1
 Score = 72.4 bits (176), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 80/171 (46%), Gaps = 13/171 (7%)
Query: 23  ALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQ 81
           ++K+  +G+  VGK+ +++    N F  +  PT+   +    +T++  T    +WDTAGQ
Sbjct: 3   SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQ 62
Query: 82  EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPK-VPIILVGTKADLR 140
           E +  L P  Y N    L+ + +    S+      W  EL     K + I LVG K D  
Sbjct: 63  ERFASLAPXYYRNAQAALVVYDVTKPQSFIK-ARHWVKELHEQASKDIIIALVGNKIDXL 121
Query: 141 SENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIA 191
            E    ++K A E       +G+K+  + K   + E SAK  E ++ VF+ 
Sbjct: 122 QEGG--ERKVARE-------EGEKLAEE-KGLLFFETSAKTGENVNDVFLG 162

>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase Length = 174

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 81/178 (45%), Gaps = 16/178 (8%)
Query: 24  LKVTTVGDGMVGKTCLLITHTENKF-PTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQE 82
            K   +GD  VGK+CLL+  T+ +F P   +    +     IT+D K   + +WDTAGQE
Sbjct: 11  FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQE 70
Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRS 141
            +  +    Y      LL + I    ++ N L+ W  + + H    + I+L+G K+DL S
Sbjct: 71  SFRSITRSYYRGAAGALLVYDITRRDTF-NHLTTWLEDARQHSNSNMVIMLIGNKSDLES 129
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKK 199
             +            V   +G+   R+     ++E SAK    +++ FI   +   +K
Sbjct: 130 RRE------------VKKEEGEAFARE-HGLIFMETSAKTASNVEEAFINTAKEIYEK 174

>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp) Length = 207

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 85/183 (46%), Gaps = 20/183 (10%)
Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
           LKV  +GD  VGKT L+  +   KF   Y  T+  D     + VD++   + +WDTAG E
Sbjct: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGLE 68
Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPE-LKHHCPK----VPIILVGTKA 137
            ++ L    Y   DC +L F + + ++++  L  W  E L    P+     P +++G K 
Sbjct: 69  RFQSLGVAFYRGADCCVLVFDVTAPNTFKT-LDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 138 DLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV 197
           DL  EN+            V+T + +          Y E SAK    ++Q F    R+A+
Sbjct: 128 DL--ENRQ-----------VATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNAL 174
Query: 198 KKQ 200
           K++
Sbjct: 175 KQE 177

>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp Length = 189

Iteration: 1
 Score = 71.2 bits (173), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 76/168 (45%), Gaps = 16/168 (9%)
Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
            K+  +G+  VGKT  L  + ++ F   +V TV  D    T+   +K   + +WDTAGQE
Sbjct: 23  FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQE 82
Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELK-HHCPKVPIILVGTKADLRS 141
            Y  +    Y     FLL + I +  S+  +   W  ++K +      +ILVG K DL  
Sbjct: 83  RYRTITTAYYRGAMGFLLMYDIANQESFAAV-QDWATQIKTYSWDNAQVILVGNKCDLED 141
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVF 189
           E             +V    G+++   +   E+ E SAK N  + QVF
Sbjct: 142 ER------------VVPAEDGRRLADDL-GFEFFEASAKENINVKQVF 176

>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi Length = 223

Iteration: 1
 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 52/181 (28%), Positives = 85/181 (46%), Gaps = 16/181 (8%)
Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPD-TITVDNKTYDVTLWDTAGQE 82
            K+  +GD  VGK+ LL   T+N+F  D   T+   +   T+ ++ K     +WDTAGQE
Sbjct: 14  FKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQE 73
Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRS 141
            Y  +    Y      L+ + I  +SSYEN  + W  EL+ +    V + L+G K+DL  
Sbjct: 74  RYRAITSAYYRGAVGALIVYDISKSSSYENC-NHWLSELRENADDNVAVGLIGNKSDL-- 130
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQD 201
                     A +  V T + K   ++ +   + E SA  +E +D+ F   + +  +K  
Sbjct: 131 ----------AHLRAVPTEESKTFAQENQLL-FTETSALNSENVDKAFEELINTIYQKVS 179
Query: 202 K 202
           K
Sbjct: 180 K 180

>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase Length = 179

Iteration: 1
 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 79/173 (45%), Gaps = 16/173 (9%)
Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQE 82
            K   +GD  VGK+CLL   TE KF  D   T+   +    I V  +   + +WDTAGQE
Sbjct: 16  FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE 75
Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRS 141
            +  +    Y      L+ + I   S+Y N LS W  + ++   P   IIL+G KADL +
Sbjct: 76  RFRAVTRSYYRGAAGALMVYDITRRSTY-NHLSSWLTDARNLTNPNTVIILIGNKADLEA 134
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
           +              V+  + K+   +     +LE SAK  E ++  F+ A +
Sbjct: 135 QRD------------VTYEEAKQFAEE-NGLLFLEASAKTGENVEDAFLEAAK 174

>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras, In The Gdp- Bound State Length = 181

Iteration: 1
 Score = 70.9 bits (172), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 80/171 (46%), Gaps = 16/171 (9%)
Query: 36  KTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNT 95
           K+ L I   ++ F +DY PT+ D+Y    +VD     + + DTAGQE++  +R       
Sbjct: 22  KSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAG 81
Query: 96  DCFLLCFSIGSTSSYENILSKWYPELKHHCPK--VPIILVGTKADLRSENKTIDKKKAAE 153
             FLL F+I    S+ N + K + ++     +   P++LVG KADL S+ +         
Sbjct: 82  HGFLLVFAINDRQSF-NEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQ--------- 131
Query: 154 VDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQDKSC 204
              V  S+          A Y E SAKL   +D+ F   VR+  K Q++  
Sbjct: 132 ---VPRSEASAFGASHHVA-YFEASAKLRLNVDEAFEQLVRAVRKYQEQEL 178

>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp Length = 200

Iteration: 1
 Score = 70.9 bits (172), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 52/180 (28%), Positives = 79/180 (43%), Gaps = 16/180 (8%)
Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPD-TITVDNKTYDVTLWDTAGQE 82
            K   +G    GK+CLL    ENKF  D   T+   +    + V  KT  + +WDTAGQE
Sbjct: 26  FKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQE 85
Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKH-HCPKVPIILVGTKADLRS 141
            +  +    Y      LL + I S  +Y N L+ W  + +    P + +IL G K DL  
Sbjct: 86  RFRSVTRSYYRGAAGALLVYDITSRETY-NSLAAWLTDARTLASPNIVVILCGNKKDLDP 144
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQD 201
           E          EV  +  S+  +    +    +LE SA   E +++ F+   R+ + K D
Sbjct: 145 ER---------EVTFLEASRFAQENELM----FLETSALTGENVEEAFLKCARTILNKID 191

>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To Gmppnp Length = 179

Iteration: 1
 Score = 70.9 bits (172), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 87/170 (51%), Gaps = 16/170 (9%)
Query: 22  KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAG 80
           +  K+  +G+  VGKT L+     + F   Y  T+  D    T+ ++++T  + LWDTAG
Sbjct: 13  RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 72
Query: 81  QEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELK-HHCPKVPIILVGTKADL 139
           QE +  L P    ++   ++ + I +T+S+    SKW  +++      V I+LVG K DL
Sbjct: 73  QERFRSLIPSYIRDSTVAVVVYDITNTNSFHQT-SKWIDDVRTERGSDVIIMLVGNKTDL 131
Query: 140 RSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVF 189
                  DK++      VST +G++  +++    ++E SAK    + Q+F
Sbjct: 132 S------DKRQ------VSTEEGERKAKELNVM-FIETSAKAGYNVKQLF 168

>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Hexagonal Space Group Length = 195

Iteration: 1
 Score = 70.5 bits (171), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 73/144 (50%), Gaps = 15/144 (10%)
Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYD---------- 72
           +K+  +GD  VGKT  L  +T+NKF   ++ TV  D     +  D +  D          
Sbjct: 12  IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVH 71
Query: 73  VTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELK--HHCPKVPI 130
           + LWDTAG E +  L    + +   FLL F + S  S+ N+   W  +L+   +C    I
Sbjct: 72  LQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNV-RNWXSQLQANAYCENPDI 130
Query: 131 ILVGTKADLRSENKTIDKKKAAEV 154
           +L+G KADL  + + +++++A E+
Sbjct: 131 VLIGNKADL-PDQREVNERQAREL 153

>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164

Iteration: 1
 Score = 70.5 bits (171), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 82/168 (48%), Gaps = 16/168 (9%)
Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQED 83
           K+  +GD  VGK+CLL+   ++ +   Y+ T+  D    TI +D KT  + +WDTAGQE 
Sbjct: 1   KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 84  YERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPEL-KHHCPKVPIILVGTKADLRSE 142
           +  +    Y      ++ + +    S+ N+  +W  E+ ++    V  +LVG K DL ++
Sbjct: 61  FRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTTK 119
Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFI 190
            K +D   A E    + S G           +LE SAK    ++Q F+
Sbjct: 120 -KVVDYTTAKE---FADSLG---------IPFLETSAKNATNVEQSFM 154

>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171

Iteration: 1
 Score = 70.5 bits (171), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 88/179 (49%), Gaps = 17/179 (9%)
Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
            K+  +GD  VGK+CLL+   ++ +   Y+ T+  D    TI +D KT  + +WDTAGQE
Sbjct: 7   FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 66
Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPEL-KHHCPKVPIILVGTKADLRS 141
            +  +    Y      ++ + +    S+ N+  +W  E+ ++    V  +LVG K DL +
Sbjct: 67  RFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTT 125
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQ 200
           + K +D   A E    + S G           +LE SAK    ++Q F+  + + +KK+
Sbjct: 126 K-KVVDYTTAKE---FADSLG---------IPFLETSAKNATNVEQSFM-TMAAEIKKR 170

>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196

Iteration: 1
 Score = 70.1 bits (170), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 88/179 (49%), Gaps = 17/179 (9%)
Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
            K+  +GD  VGK+CLL+   ++ +   Y+ T+  D    TI +D KT  + +WDTAGQE
Sbjct: 17  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 76
Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPEL-KHHCPKVPIILVGTKADLRS 141
            +  +    Y      ++ + +    S+ N+  +W  E+ ++    V  +LVG K DL +
Sbjct: 77  RFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTT 135
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQ 200
           + K +D   A E    + S G           +LE SAK    ++Q F+  + + +KK+
Sbjct: 136 K-KVVDYTTAKE---FADSLG---------IPFLETSAKNATNVEQSFM-TMAAEIKKR 180

>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166

Iteration: 1
 Score = 70.1 bits (170), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 79/170 (46%), Gaps = 16/170 (9%)
Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQE 82
            K+  +G+  VGK+ L++   + +F      T+   +   T+ +D+ T    +WDTAGQE
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQE 65
Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRS 141
            Y  L PM Y      ++ + I +T ++      W  EL+    P + I L G KADL S
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNTDTFARA-KNWVKELQRQASPNIVIALAGNKADLAS 124
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIA 191
                  K+A E       Q  +      +  ++E SAK    ++++F+A
Sbjct: 125 -------KRAVEF------QEAQAYADDNSLLFMETSAKTAMNVNEIFMA 161

>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191

Iteration: 1
 Score = 70.1 bits (170), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 88/179 (49%), Gaps = 17/179 (9%)
Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
            K+  +GD  VGK+CLL+   ++ +   Y+ T+  D    TI +D KT  + +WDTAGQE
Sbjct: 26  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 85
Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPEL-KHHCPKVPIILVGTKADLRS 141
            +  +    Y      ++ + +    S+ N+  +W  E+ ++    V  +LVG K DL +
Sbjct: 86  RFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTT 144
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQ 200
           + K +D   A E    + S G           +LE SAK    ++Q F+  + + +KK+
Sbjct: 145 K-KVVDYTTAKE---FADSLG---------IPFLETSAKNATNVEQSFM-TMAAEIKKR 189

>pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171

Iteration: 1
 Score = 70.1 bits (170), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 88/179 (49%), Gaps = 17/179 (9%)
Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
            K+  +GD  VGK+CLL+   ++ +   Y+ T+  D    TI +D KT  + +WDTAGQE
Sbjct: 7   FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 66
Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPEL-KHHCPKVPIILVGTKADLRS 141
            +  +    Y      ++ + +    S+ N+  +W  E+ ++    V  +LVG K DL +
Sbjct: 67  RFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTT 125
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQ 200
           + K +D   A E    + S G           +LE SAK    ++Q F+  + + +KK+
Sbjct: 126 K-KVVDYTTAKE---FADSLG---------IPFLETSAKNATNVEQSFM-TMAAEIKKR 170

>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed With The Slp Homology Domain Of Slac2-AMELANOPHILIN Length = 203

Iteration: 1
 Score = 70.1 bits (170), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 73/144 (50%), Gaps = 15/144 (10%)
Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYD---------- 72
           +K+  +GD  VGKT  L  +T+NKF   ++ TV  D     +  D +  D          
Sbjct: 12  IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVH 71
Query: 73  VTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELK--HHCPKVPI 130
           + LWDTAG E +  L    + +   FLL F + S  S+ N+   W  +L+   +C    I
Sbjct: 72  LQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNV-RNWXSQLQANAYCENPDI 130
Query: 131 ILVGTKADLRSENKTIDKKKAAEV 154
           +L+G KADL  + + +++++A E+
Sbjct: 131 VLIGNKADL-PDQREVNERQAREL 153

>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c (Mouse) Length = 164

Iteration: 1
 Score = 70.1 bits (170), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 79/170 (46%), Gaps = 16/170 (9%)
Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQE 82
            K+  +G+  VGK+ L++   + +F      T+   +   T+ +D+ T    +WDTAGQE
Sbjct: 4   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 63
Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRS 141
            Y  L PM Y      ++ + I +T ++      W  EL+    P + I L G KADL S
Sbjct: 64  RYHSLAPMYYRGAQAAIVVYDITNTDTFARA-KNWVKELQRQASPNIVIALAGNKADLAS 122
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIA 191
                  K+A E       Q  +      +  ++E SAK    ++++F+A
Sbjct: 123 -------KRAVEF------QEAQAYADDNSLLFMETSAKTAMNVNEIFMA 159

>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 200

Iteration: 1
 Score = 70.1 bits (170), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 73/144 (50%), Gaps = 15/144 (10%)
Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYD---------- 72
           +K+  +GD  VGKT  L  +T+NKF   ++ TV  D     +  D +  D          
Sbjct: 12  IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVH 71
Query: 73  VTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELK--HHCPKVPI 130
           + LWDTAG E +  L    + +   FLL F + S  S+ N+   W  +L+   +C    I
Sbjct: 72  LQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNV-RNWMSQLQANAYCENPDI 130
Query: 131 ILVGTKADLRSENKTIDKKKAAEV 154
           +L+G KADL  + + +++++A E+
Sbjct: 131 VLIGNKADL-PDQREVNERQAREL 153

>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 220

Iteration: 1
 Score = 70.1 bits (170), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 73/144 (50%), Gaps = 15/144 (10%)
Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYD---------- 72
           +K+  +GD  VGKT  L  +T+NKF   ++ TV  D     +  D +  D          
Sbjct: 12  IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVH 71
Query: 73  VTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELK--HHCPKVPI 130
           + LWDTAG E +  L    + +   FLL F + S  S+ N+   W  +L+   +C    I
Sbjct: 72  LQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNV-RNWMSQLQANAYCENPDI 130
Query: 131 ILVGTKADLRSENKTIDKKKAAEV 154
           +L+G KADL  + + +++++A E+
Sbjct: 131 VLIGNKADL-PDQREVNERQAREL 153

>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 88/179 (49%), Gaps = 17/179 (9%)
Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
            K+  +GD  VGK+CLL+   ++ +   Y+ T+  D    TI +D KT  + +WDTAGQE
Sbjct: 9   FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 68
Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPEL-KHHCPKVPIILVGTKADLRS 141
            +  +    Y      ++ + +    S+ N+  +W  E+ ++    V  +LVG K DL +
Sbjct: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGIKCDLTT 127
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQ 200
           + K +D   A E    + S G           +LE SAK    ++Q F+  + + +KK+
Sbjct: 128 K-KVVDYTTAKE---FADSLG---------IPFLETSAKNATNVEQSFM-TMAAEIKKR 172

>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase Length = 169

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 81/175 (46%), Gaps = 16/175 (9%)
Query: 22  KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAG 80
           + LKV  +GD  VGK+ ++    E+ F  +  PT+  ++   T+   N+ +   +WDTAG
Sbjct: 4   RELKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAG 63
Query: 81  QEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADL 139
           QE +  L PM Y  +   ++ + I    ++   L  W  EL+ H  P + + + G K DL
Sbjct: 64  QERFRALAPMYYRGSAAAIIVYDITKEETFST-LKNWVRELRQHGPPSIVVAIAGNKCDL 122
Query: 140 RSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
               + +++      D +              A ++E SAK    ++++FI   R
Sbjct: 123 TDVREVMERDAKDYADSIH-------------AIFVETSAKNAININELFIEISR 164

>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 87/179 (48%), Gaps = 17/179 (9%)
Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
            K+  +GD  VGK CLL+   ++ +   Y+ T+  D    TI +D KT  + +WDTAGQE
Sbjct: 17  FKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 76
Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPEL-KHHCPKVPIILVGTKADLRS 141
            +  +    Y      ++ + +    S+ N+  +W  E+ ++    V  +LVG K DL +
Sbjct: 77  RFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTT 135
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQ 200
           + K +D   A E    + S G           +LE SAK    ++Q F+  + + +KK+
Sbjct: 136 K-KVVDYTTAKE---FADSLG---------IPFLETSAKNATNVEQSFM-TMAAEIKKR 180

>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State Length = 196

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/197 (29%), Positives = 99/197 (50%), Gaps = 24/197 (12%)
Query: 11  GDKDVKSKSVHKA--LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDN 68
           G +++  +S+ K+  +K+   G   VGK+ L++     +F  +Y PT+   Y    T+D+
Sbjct: 14  GTENLYFQSMAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDD 73
Query: 69  KTYDVTLWDTAGQED-YERLRPMSYPNTDCFLLCFSIGSTSSYENI--LSKWYPELKHHC 125
           +   + + DTAGQED  +R   M +   + F+L + I    S+E +  L     E+K   
Sbjct: 74  EVVSMEILDTAGQEDTIQREGHMRWG--EGFVLVYDITDRGSFEEVLPLKNILDEIKK-- 129
Query: 126 PK-VPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEG 184
           PK V +ILVG KADL    +            VST +G+K+  ++  A Y ECSA   EG
Sbjct: 130 PKNVTLILVGNKADLDHSRQ------------VSTEEGEKLATELACAFY-ECSACTGEG 176
Query: 185 -LDQVFIAAVRSAVKKQ 200
            + ++F    R   +++
Sbjct: 177 NITEIFYELCREVRRRR 193

>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 81/168 (48%), Gaps = 16/168 (9%)
Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
            K+  +GD  VGK+CLL+   ++ +   Y+ T+  D    TI +D KT  + +WDTAGQE
Sbjct: 34  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 93
Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPEL-KHHCPKVPIILVGTKADLRS 141
            +  +    Y      ++ + +    S+ N+  +W  E+ ++    V  +LVG K DL +
Sbjct: 94  RFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTT 152
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVF 189
           + K +D   A E    + S G           +LE SAK    ++Q F
Sbjct: 153 K-KVVDYTTAKE---FADSLG---------IPFLETSAKNATNVEQSF 187

>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp Analogue Length = 192

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 72/141 (51%), Gaps = 4/141 (2%)
Query: 15  VKSKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDV 73
           V   S  + LKV  +GD  VGK+ ++    ++ F  +  PT+  ++   T+   N+ +  
Sbjct: 15  VPRGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKF 74
Query: 74  TLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPK-VPIIL 132
            +WDTAGQE +  L PM Y  +   ++ + I    S+   L KW  ELK H P+ + + +
Sbjct: 75  LIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYT-LKKWVKELKEHGPENIVMAI 133
Query: 133 VGTKADLRSENKTIDKKKAAE 153
            G K DL S+ + +  K A E
Sbjct: 134 AGNKCDL-SDIREVPLKDAKE 153

>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase Length = 189

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 62/131 (47%), Gaps = 5/131 (3%)
Query: 15  VKSKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDV 73
           V   S  +  K+  +GD  VGKTCL       +FP     T+  D     + +D +   +
Sbjct: 12  VPRGSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKI 71
Query: 74  TLWDTAGQEDYER-LRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHH--CPKVPI 130
            LWDTAGQE + + +    Y N    +  + + + +S+ + L  W  E K H     +P 
Sbjct: 72  QLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHS-LPAWIEECKQHLLANDIPR 130
Query: 131 ILVGTKADLRS 141
           ILVG K DLRS
Sbjct: 131 ILVGNKCDLRS 141

>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A Length = 181

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 80/172 (46%), Gaps = 16/172 (9%)
Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQED 83
           K+  +GD   GK+ L++   +++F      T+   +   T+ V++ T    +WDTAGQE 
Sbjct: 14  KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 73
Query: 84  YERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSE 142
           Y  L PM Y      ++ F + + +S+E    KW  EL+    P + + L G K+DL   
Sbjct: 74  YHSLAPMYYRGAAAAIIVFDVTNQASFERA-KKWVQELQAQGNPNMVMALAGNKSDL--- 129
Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
              +D +K    D  + +Q   +        ++E SAK    + ++F    R
Sbjct: 130 ---LDARKVTAEDAQTYAQENGLF-------FMETSAKTATNVKEIFYEIAR 171

>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal Structure Of The Small G Protein Rab3a Complexed With The Effector Domain Of Rabphilin-3a Length = 203

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 78/168 (46%), Gaps = 16/168 (9%)
Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
            K+  +G+  VGKT  L  + ++ F   +V TV  D    TI  ++K   + +WDTAG E
Sbjct: 9   FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLE 68
Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELK-HHCPKVPIILVGTKADLRS 141
            Y  +    Y     F+L + I +  S+ N +  W  ++K +      ++LVG K D   
Sbjct: 69  RYRTITTAYYRGAXGFILXYDITNEESF-NAVQDWSTQIKTYSWDNAQVLLVGNKCDXED 127
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVF 189
           E             +VS+ +G+++   +   E+ E SAK N  + Q F
Sbjct: 128 ER------------VVSSERGRQLADHL-GFEFFEASAKDNINVKQTF 162

>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In Complex With Gdp Length = 181

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 41/120 (34%), Positives = 63/120 (52%), Gaps = 4/120 (3%)
Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYP-DTITV-DNKTYDVTLWDTAGQ 81
            K+  +GD  VGK+ LL   T ++F  +   T+   +   +I + +NK     +WDTAGQ
Sbjct: 8   FKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWDTAGQ 67
Query: 82  EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLR 140
           E Y  +    Y      LL + I   +S+ENI  KW  EL+ +    + I+LVG K+DL+
Sbjct: 68  ERYRAITSAYYRGAVGALLVYDITKKNSFENI-EKWLKELRDNADSNIVILLVGNKSDLK 126

>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp Length = 191

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 77/168 (45%), Gaps = 16/168 (9%)
Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
            K+  +G+  VGKT  L  + ++ F   +V TV  D    T+    K   + +WDTAGQE
Sbjct: 24  FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQE 83
Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELK-HHCPKVPIILVGTKADLRS 141
            Y  +    Y     F+L + I +  S+ N +  W  ++K +      +ILVG K D+  
Sbjct: 84  RYRTITTAYYRGAMGFILMYDITNEESF-NAVQDWATQIKTYSWDNAQVILVGNKCDMEE 142
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVF 189
           E             +V T +G+ +  ++   ++ E SAK N  + Q F
Sbjct: 143 ER------------VVPTEKGQLLAEQL-GFDFFEASAKENISVRQAF 177

>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 83/173 (47%), Gaps = 16/173 (9%)
Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQE 82
            K+  +G+ +VGK+ L++   + +F      T+   +   T+ +D+ T    +WDTAGQE
Sbjct: 7   FKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRS 141
            Y  L PM Y      ++ + I +  S+      W  EL+    P + I L G KADL +
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGNKADL-A 124
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
             + +D ++A      S +    +        ++E SAK +  ++++F+A  +
Sbjct: 125 NKRAVDFQEAQ-----SYADDNSLL-------FMETSAKTSMNVNEIFMAIAK 165

>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14 Length = 196

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 78/173 (45%), Gaps = 16/173 (9%)
Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQE 82
            K   +GD  VGK+CLL   TE KF  D   T+   +    I V  +   + +WDTAGQ 
Sbjct: 31  FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQG 90
Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRS 141
            +  +    Y      L+ + I   S+Y N LS W  + ++   P   IIL+G KADL +
Sbjct: 91  RFRAVTRSYYRGAAGALMVYDITRRSTY-NHLSSWLTDARNLTNPNTVIILIGNKADLEA 149
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
           +              V+  + K+   +     +LE SAK  E ++  F+ A +
Sbjct: 150 QRD------------VTYEEAKQFAEE-NGLLFLEASAKTGENVEDAFLEAAK 189

>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group Length = 168

Iteration: 1
 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 60/118 (50%), Gaps = 2/118 (1%)
Query: 23  ALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQ 81
           A+K+  VG+G VGK+ ++  + +  F  DY  T+  D     I V+++   + LWDTAGQ
Sbjct: 5   AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQ 64
Query: 82  EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADL 139
           E+++ +    Y      +L FS     S+E I S W  ++      +P  LV  K DL
Sbjct: 65  EEFDAITKAYYRGAQACVLVFSTTDRESFEAI-SSWREKVVAEVGDIPTALVQNKIDL 121

>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 82/174 (47%), Gaps = 18/174 (10%)
Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
            K+  +G+  VGK+CLL+  +++ +  DY+ T+  D    T+ +D KT  + +WDTAGQE
Sbjct: 9   FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 68
Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPI-ILVGTKADLRS 141
            +  +    Y  +   ++ + +    S+ N +  W  E+  +     + +LVG K DL+ 
Sbjct: 69  RFRTITSSYYRGSHGIIIVYDVTDQESF-NGVKMWLQEIDRYATSTVLKLLVGNKCDLKD 127
Query: 142 ENKTIDKKKAAEVDLVST-SQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
                  K+  E D+    +   KM        +LE SA  +  ++  F+   R
Sbjct: 128 -------KRVVEYDVAKEFADANKM-------PFLETSALDSTNVEDAFLTMAR 167

>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b Length = 191

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 79/178 (44%), Gaps = 16/178 (8%)
Query: 24  LKVTTVGDGMVGKTCLLITHTENKF-PTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQE 82
            K   +GD  VGK+CLL+  T+ +F P   +    +     + +D K   + +WDTAGQE
Sbjct: 22  FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE 81
Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHH-CPKVPIILVGTKADLRS 141
            +  +    Y      LL + I    ++ N L+ W  + + H    + I+L+G K+DL S
Sbjct: 82  SFRSITRSYYRGAAGALLVYDITRRETF-NHLTSWLEDARQHSSSNMVIMLIGNKSDLES 140
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKK 199
                          V   +G+   R+     ++E SAK    +++ FI   +   +K
Sbjct: 141 RRD------------VKREEGEAFARE-HGLIFMETSAKTACNVEEAFINTAKEIYRK 185

>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 82/174 (47%), Gaps = 18/174 (10%)
Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
            K+  +G+  VGK+CLL+  +++ +  DY+ T+  D    T+ +D KT  + +WDTAGQE
Sbjct: 9   FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 68
Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPI-ILVGTKADLRS 141
            +  +    Y  +   ++ + +    S+ N +  W  E+  +     + +LVG K DL+ 
Sbjct: 69  RFRTITSSYYRGSHGIIIVYDVTDQESF-NGVKMWLQEIDRYATSTVLKLLVGNKCDLKD 127
Query: 142 ENKTIDKKKAAEVDLVST-SQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
                  K+  E D+    +   KM        +LE SA  +  ++  F+   R
Sbjct: 128 -------KRVVEYDVAKEFADANKM-------PFLETSALDSTNVEDAFLTMAR 167

>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 84/178 (47%), Gaps = 15/178 (8%)
Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
           L+V  +G   VGKT L+   T++ F      TV  D    T+ +  K   + +WDTAGQE
Sbjct: 27  LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE 86
Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPEL-KHHCPKVPIILVGTKADLRS 141
            +  +    Y +    +L + I    ++++ L KW   + K+      ++LVG K D  +
Sbjct: 87  RFNSITSAYYRSAKGIILVYDITKKETFDD-LPKWMKMIDKYASEDAELLLVGNKLDCET 145
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKK 199
           + +            ++  QG+K  ++I    + E SAK N  +D++F+  V   +KK
Sbjct: 146 DRE------------ITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKK 191

>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With The Minimal Rab Binding Domain Of Rabenosyn-5 Length = 170

Iteration: 1
 Score = 67.8 bits (164), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 81/178 (45%), Gaps = 16/178 (8%)
Query: 19  SVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWD 77
           S  + LKV  +GD  VGK+ ++    E+ F  +  PT+  ++   T+   N+ +   +WD
Sbjct: 2   SALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWD 61
Query: 78  TAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTK 136
           TAG E +  L PM Y  +   ++ + I    ++   L  W  EL+ H  P + + + G K
Sbjct: 62  TAGLERFRALAPMYYRGSAAAIIVYDITKEETFST-LKNWVRELRQHGPPSIVVAIAGNK 120
Query: 137 ADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
            DL    + +++      D +              A ++E SAK    ++++FI   R
Sbjct: 121 CDLTDVREVMERDAKDYADSIH-------------AIFVETSAKNAININELFIEISR 165

>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185

Iteration: 1
 Score = 67.8 bits (164), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 82/174 (47%), Gaps = 18/174 (10%)
Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
            K+  +G+  VGK+CLL+  +++ +  DY+ T+  D    T+ +D KT  + +WDTAGQE
Sbjct: 22  FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 81
Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPI-ILVGTKADLRS 141
            +  +    Y  +   ++ + +    S+ N +  W  E+  +     + +LVG K DL+ 
Sbjct: 82  RFRTITSSYYRGSHGIIIVYDVTDQESF-NGVKMWLQEIDRYATSTVLKLLVGNKCDLKD 140
Query: 142 ENKTIDKKKAAEVDLV-STSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
                  K+  E D+    +   KM        +LE SA  +  ++  F+   R
Sbjct: 141 -------KRVVEYDVAKEFADANKM-------PFLETSALDSTNVEDAFLTMAR 180

>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 198

Iteration: 1
 Score = 67.4 bits (163), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 59/124 (47%), Gaps = 5/124 (4%)
Query: 22  KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAG 80
           +  K+  +GD  VGKTCL       +FP     T+  D     + +D +   + LWDTAG
Sbjct: 28  RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAG 87
Query: 81  QEDYER-LRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHH--CPKVPIILVGTKA 137
           QE + + +    Y N    +  +   + +S+ + L  W  E K H     +P ILVG K 
Sbjct: 88  QERFRKSMVQHYYRNVHAVVFVYDXTNXASFHS-LPAWIEECKQHLLANDIPRILVGNKC 146
Query: 138 DLRS 141
           DLRS
Sbjct: 147 DLRS 150

>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170

Iteration: 1
 Score = 67.4 bits (163), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 82/173 (47%), Gaps = 16/173 (9%)
Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQE 82
            K+  +G+  VGK+ L++   + +F      T+   +   T+ +D+ T    +WDTAGQE
Sbjct: 7   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRS 141
            Y  L PM Y      ++ + I +  S+      W  EL+    P + I L G KADL +
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGNKADL-A 124
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
             + +D ++A      S +    +        ++E SAK +  ++++F+A  +
Sbjct: 125 NKRAVDFQEAQ-----SYADDNSLL-------FMETSAKTSMNVNEIFMAIAK 165

>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171

Iteration: 1
 Score = 67.4 bits (163), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 82/173 (47%), Gaps = 16/173 (9%)
Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQE 82
            K+  +G+  VGK+ L++   + +F      T+   +   T+ +D+ T    +WDTAGQE
Sbjct: 8   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRS 141
            Y  L PM Y      ++ + I +  S+      W  EL+    P + I L G KADL +
Sbjct: 68  RYHSLAPMYYRGAQAAIVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGNKADL-A 125
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
             + +D ++A      S +    +        ++E SAK +  ++++F+A  +
Sbjct: 126 NKRAVDFQEAQ-----SYADDNSLL-------FMETSAKTSMNVNEIFMAIAK 166

>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp Bound Form At 1.8 Resolution Length = 162

Iteration: 1
 Score = 67.4 bits (163), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 85/168 (50%), Gaps = 16/168 (9%)
Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
            K+  +G+  VGKT L+     + F   Y  T+  D    T+ ++++T  + LWDTAGQE
Sbjct: 2   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 61
Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELK-HHCPKVPIILVGTKADLRS 141
            +  L P    ++   ++ + I + +S++   +KW  +++      V I+LVG K DL  
Sbjct: 62  RFRSLIPSYIRDSTVAVVVYDITNVNSFQQT-TKWIDDVRTERGSDVIIMLVGNKTDL-- 118
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVF 189
                DK++      VS  +G++  +++    ++E SAK    + Q+F
Sbjct: 119 ----ADKRQ------VSIEEGERKAKELNVM-FIETSAKAGYNVKQLF 155

>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 67.0 bits (162), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 82/173 (47%), Gaps = 16/173 (9%)
Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQE 82
            K+  +G+  VGK+ L++   + +F      T+   +   T+ +D+ T    +WDTAGQE
Sbjct: 7   FKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRS 141
            Y  L PM Y      ++ + I +  S+      W  EL+    P + I L G KADL +
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGNKADL-A 124
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
             + +D ++A      S +    +        ++E SAK +  ++++F+A  +
Sbjct: 125 NKRAVDFQEAQ-----SYADDNSLL-------FMETSAKTSMNVNEIFMAIAK 165

>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase Length = 170

Iteration: 1
 Score = 67.0 bits (162), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 86/170 (50%), Gaps = 16/170 (9%)
Query: 22  KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAG 80
           +  K+  +G+  VGKT L+     + F   Y  T+  D    T+ ++++T  + LWDTAG
Sbjct: 5   RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAG 64
Query: 81  QEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELK-HHCPKVPIILVGTKADL 139
           QE +  L P    ++   ++ + I + +S++   +KW  +++      V I+LVG K DL
Sbjct: 65  QERFRSLIPSYIRDSAAAVVVYDITNVNSFQQT-TKWIDDVRTERGSDVIIMLVGNKTDL 123
Query: 140 RSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVF 189
                  DK++      VS  +G++  +++    ++E SAK    + Q+F
Sbjct: 124 ------ADKRQ------VSIEEGERKAKELNVM-FIETSAKAGYNVKQLF 160

>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 67.0 bits (162), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 82/173 (47%), Gaps = 16/173 (9%)
Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQE 82
            K+  +G+  VGK+ L++   + +F      T+   +   T+ +D+ T    +WDTAGQE
Sbjct: 7   FKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRS 141
            Y  L PM Y      ++ + I +  S+      W  EL+    P + I L G KADL +
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGNKADL-A 124
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
             + +D ++A      S +    +        ++E SAK +  ++++F+A  +
Sbjct: 125 NKRAVDFQEAQ-----SYADDNSLL-------FMETSAKTSMNVNEIFMAIAK 165

>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 66.6 bits (161), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 82/173 (47%), Gaps = 16/173 (9%)
Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQE 82
            K+  +G+  VGK+ L++   + +F      T+   +   T+ +D+ T    +WDTAGQE
Sbjct: 7   FKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRS 141
            Y  L PM Y      ++ + I +  S+      W  EL+    P + I L G KADL +
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGNKADL-A 124
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
             + +D ++A      S +    +        ++E SAK +  ++++F+A  +
Sbjct: 125 NKRAVDFQEAQ-----SYADDNSLL-------FMETSAKTSMNVNEIFMAIAK 165

>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase Length = 167

Iteration: 1
 Score = 66.6 bits (161), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 78/170 (45%), Gaps = 16/170 (9%)
Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQE 82
            K+  +G+  VGK+ L++   + +F      T+   +   T+ +D+ T    +WDTAG E
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRS 141
            Y  L PM Y      ++ + I +T ++      W  EL+    P + I L G KADL S
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNTDTFARA-KNWVKELQRQASPNIVIALAGNKADLAS 124
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIA 191
                  K+A E       Q  +      +  ++E SAK    ++++F+A
Sbjct: 125 -------KRAVEF------QEAQAYADDNSLLFMETSAKTAMNVNEIFMA 161

>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its Inactive Gdp-Bound Form Length = 171

Iteration: 1
 Score = 66.6 bits (161), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 85/168 (50%), Gaps = 16/168 (9%)
Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
            K+  +G+  VGKT L+     + F   Y  T+  D    T+ ++++T  + LWDTAGQE
Sbjct: 3   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 62
Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELK-HHCPKVPIILVGTKADLRS 141
            +  L P    ++   ++ + I + +S++   SKW  +++      V I+LVG K DL  
Sbjct: 63  RFRSLIPSYIRDSTVAVVVYDITNLNSFQQT-SKWIDDVRTERGSDVIIMLVGNKTDL-- 119
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVF 189
                DK++      ++  +G++ R K  +  ++E SAK    + Q+F
Sbjct: 120 ----ADKRQ------ITIEEGEQ-RAKELSVMFIETSAKTGYNVKQLF 156

>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp Length = 185

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 60/118 (50%), Gaps = 3/118 (2%)
Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPD-TITVDNKTYDVTLWDTAGQE 82
            K+  +GD  VGK+ LL   T ++F  +   T+   +   TI V+NK     +WDTAG E
Sbjct: 11  FKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGLE 70
Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADL 139
            Y  +    Y      L+ + I  +SSYEN  + W  EL+ +    V + L+G K+DL
Sbjct: 71  RYRAITSAYYRGAVGALIVYDISKSSSYEN-CNHWLTELRENADDNVAVGLIGNKSDL 127

>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp Length = 170

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 82/173 (47%), Gaps = 16/173 (9%)
Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQE 82
            K+  +G+  VGK+ L++   + +F      T+   +   T+ +D+ T    +WDTAGQE
Sbjct: 7   FKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRS 141
            Y  L PM Y      ++ + I +  S+      W  EL+    P + I L G KADL +
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGNKADL-A 124
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
             + +D ++A      S +    +        ++E SAK +  ++++F+A  +
Sbjct: 125 NKRAVDFQEAQ-----SYADDNSLL-------FMETSAKTSMNVNEIFMAIAK 165

>pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 59/113 (52%), Gaps = 3/113 (2%)
Query: 29  VGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQEDYERL 87
           +GD  VGK+CLL+   ++ +   Y+ T+  D    TI +D KT  + +WDTAGQE +  +
Sbjct: 4   IGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTI 63
Query: 88  RPMSYPNTDCFLLCFSIGSTSSYENILSKWYPEL-KHHCPKVPIILVGTKADL 139
               Y      ++ + +    S+ N+  +W  E+ ++    V  +LVG K DL
Sbjct: 64  TSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDL 115

>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 92/187 (49%), Gaps = 19/187 (10%)
Query: 22  KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAG 80
           +  K+  +G+  VGKT L+     + F   Y  T+  D    T+ ++++T  + LWDTAG
Sbjct: 5   RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 64
Query: 81  QEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELK-HHCPKVPIILVGTKADL 139
            E +  L P    ++   ++ + I + +S++   +KW  +++      V I+LVG K DL
Sbjct: 65  LERFRSLIPSYIRDSTVAVVVYDITNVNSFQQT-TKWIDDVRTERGSDVIIMLVGNKTDL 123
Query: 140 RSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVF---IAAVRSA 196
                  DK++      VS  +G++  +++    ++E SAK    + Q+F    AA+   
Sbjct: 124 ------ADKRQ------VSIEEGERKAKELNVM-FIETSAKAGYNVKQLFRRVAAALPGM 170
Query: 197 VKKQDKS 203
              QD+S
Sbjct: 171 ESTQDRS 177

>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l) Length = 216

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 92/187 (49%), Gaps = 19/187 (10%)
Query: 22  KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAG 80
           +  K+  +G+  VGKT L+     + F   Y  T+  D    T+ ++++T  + LWDTAG
Sbjct: 12  RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAG 71
Query: 81  QEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELK-HHCPKVPIILVGTKADL 139
            E +  L P    ++   ++ + I + +S++   +KW  +++      V I+LVG K DL
Sbjct: 72  LERFRSLIPSYIRDSAAAVVVYDITNVNSFQQT-TKWIDDVRTERGSDVIIMLVGNKTDL 130
Query: 140 RSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVF---IAAVRSA 196
                  DK++      VS  +G++  +++    ++E SAK    + Q+F    AA+   
Sbjct: 131 ------ADKRQ------VSIEEGERKAKELNVM-FIETSAKAGYNVKQLFRRVAAALPGM 177
Query: 197 VKKQDKS 203
              QD+S
Sbjct: 178 ESTQDRS 184

>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex Length = 211

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 92/187 (49%), Gaps = 19/187 (10%)
Query: 22  KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAG 80
           +  K+  +G+  VGKT L+     + F   Y  T+  D    T+ ++++T  + LWDTAG
Sbjct: 15  RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 74
Query: 81  QEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELK-HHCPKVPIILVGTKADL 139
            E +  L P    ++   ++ + I + +S++   +KW  +++      V I+LVG K DL
Sbjct: 75  LERFRSLIPSYIRDSTVAVVVYDITNVNSFQQT-TKWIDDVRTERGSDVIIMLVGNKTDL 133
Query: 140 RSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVF---IAAVRSA 196
                  DK++      VS  +G++  +++    ++E SAK    + Q+F    AA+   
Sbjct: 134 ------ADKRQ------VSIEEGERKAKELNVM-FIETSAKAGYNVKQLFRRVAAALPGM 180
Query: 197 VKKQDKS 203
              QD+S
Sbjct: 181 ESTQDRS 187

>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a Length = 186

Iteration: 1
 Score = 64.7 bits (156), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 77/178 (43%), Gaps = 16/178 (8%)
Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPD-TITVDNKTYDVTLWDTAGQE 82
            K   +G+   GK+CLL    E KF  D   T+   +    I V  K   + +WDTAGQE
Sbjct: 11  FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 70
Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPK-VPIILVGTKADLRS 141
            +  +    Y      LL + I S  +Y N L+ W  + +    + + IIL G K DL +
Sbjct: 71  RFRSVTRSYYRGAAGALLVYDITSRETY-NALTNWLTDARMLASQNIVIILCGNKKDLDA 129
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKK 199
           +          EV  +  S+  +    +    +LE SA   E +++ F+   R  + K
Sbjct: 130 DR---------EVTFLEASRFAQENELM----FLETSALTGENVEEAFVQCARKILNK 174

>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a Length = 195

Iteration: 1
 Score = 64.3 bits (155), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 70/144 (48%), Gaps = 15/144 (10%)
Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-----------PDTITVDNKTYD 72
           +K   +GD  VGKT +L  +T+ KF + ++ TV  ++           PD      +   
Sbjct: 12  IKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIH 71
Query: 73  VTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC--PKVPI 130
           + LWDTAG E +  L    + +   FLL F + +  S+ N+   W  +L+ H       I
Sbjct: 72  LQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNV-RNWISQLQMHAYSENPDI 130
Query: 131 ILVGTKADLRSENKTIDKKKAAEV 154
           +L G K+DL  + + + +++A E+
Sbjct: 131 VLCGNKSDL-EDQRAVKEEEAREL 153

>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2 Zinc Finger Of Eea1 Length = 168

Iteration: 1
 Score = 64.3 bits (155), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 81/173 (46%), Gaps = 16/173 (9%)
Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQE 82
            K+  +G+  VGK+ L++   + +F      T+   +   T+ +D+ T    +WDTAG E
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRS 141
            Y  L PM Y      ++ + I +  S+      W  EL+    P + I L G KADL +
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGNKADL-A 123
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
             + +D ++A      S +    +        ++E SAK +  ++++F+A  +
Sbjct: 124 NKRAVDFQEAQ-----SYADDNSLL-------FMETSAKTSMNVNEIFMAIAK 164

>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a Length = 175

Iteration: 1
 Score = 63.9 bits (154), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 77/178 (43%), Gaps = 16/178 (8%)
Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPD-TITVDNKTYDVTLWDTAGQE 82
            K   +G+   GK+CLL    E KF  D   T+   +    I V  K   + +WDTAGQE
Sbjct: 12  FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 71
Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPK-VPIILVGTKADLRS 141
            +  +    Y      LL + I S  +Y N L+ W  + +    + + IIL G K DL +
Sbjct: 72  RFRSVTRSYYRGAAGALLVYDITSRETY-NALTNWLTDARMLASQNIVIILCGNKKDLDA 130
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKK 199
           +          EV  +  S+  +    +    +LE SA   E +++ F+   R  + K
Sbjct: 131 DR---------EVTFLEASRFAQENELM----FLETSALTGEDVEEAFVQCARKILNK 175

>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 63/130 (48%), Gaps = 4/130 (3%)
Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQE 82
            K+  +G+  VGK+ L++   + +F      T+   +   T+ +D+ T    +WDTAGQE
Sbjct: 8   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRS 141
            Y  L P  Y      ++ + I +  S+      W  EL+    P + I L G KADL +
Sbjct: 68  RYHSLAPXYYRGAQAAIVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGNKADL-A 125
Query: 142 ENKTIDKKKA 151
             + +D ++A
Sbjct: 126 NKRAVDFQEA 135

>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp Length = 179

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 3/118 (2%)
Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQE 82
            K+  +G+  VGK+ L++   + +F      T+   +   ++ +D+ T    +WDTAGQE
Sbjct: 9   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQE 68
Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADL 139
            Y  L PM Y      ++ + I +  ++      W  EL+    P + I L G KADL
Sbjct: 69  RYHSLAPMYYRGAQAAIVVYDITNQETFARA-KTWVKELQRQASPSIVIALAGNKADL 125

>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The Inactive Gdp Bound State Length = 199

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 75/156 (48%), Gaps = 16/156 (10%)
Query: 36  KTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNT 95
           K+ L++   +  F   Y+PT+ D Y   I+ D     + + DT G   +  ++ +S    
Sbjct: 21  KSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKG 80
Query: 96  DCFLLCFSIGSTSSYENI--LSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAE 153
             F+L FS+ S  S E +  + K   ++K     +P++LVG K D          +   E
Sbjct: 81  HAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCD----------ETQRE 130
Query: 154 VDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVF 189
           VD   T + + + ++ K A ++E SAK+N  + ++F
Sbjct: 131 VD---TREAQAVAQEWKCA-FMETSAKMNYNVKELF 162

>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In Complex With Fip2 Length = 178

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 55/118 (46%), Gaps = 3/118 (2%)
Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPD-TITVDNKTYDVTLWDTAGQE 82
            KV  +G+  VGKT LL   T N+F  D   T+   +   T+ +        +WDTAG E
Sbjct: 11  FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE 70
Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADL 139
            Y  +    Y      LL F +    +Y  ++ +W  EL  H    + ++LVG K+DL
Sbjct: 71  RYRAITSAYYRGAVGALLVFDLTKHQTYA-VVERWLKELYDHAEATIVVMLVGNKSDL 127

>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp Length = 193

Iteration: 1
 Score = 61.2 bits (147), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 55/118 (46%), Gaps = 3/118 (2%)
Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPD-TITVDNKTYDVTLWDTAGQE 82
            KV  +G+  VGKT LL   T N+F  D   T+   +   T+ +        +WDTAG E
Sbjct: 26  FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE 85
Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADL 139
            Y  +    Y      LL F +    +Y  ++ +W  EL  H    + ++LVG K+DL
Sbjct: 86  RYRAITSAYYRGAVGALLVFDLTKHQTYA-VVERWLKELYDHAEATIVVMLVGNKSDL 142

>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The Central Rab Binding Domain Of Rabenosyn-5 Length = 172

Iteration: 1
 Score = 60.8 bits (146), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 76/178 (42%), Gaps = 16/178 (8%)
Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPD-TITVDNKTYDVTLWDTAGQE 82
            K   +G+   GK+CLL    E KF  D   T+   +    I V  K   + +WDTAG E
Sbjct: 9   FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGLE 68
Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPK-VPIILVGTKADLRS 141
            +  +    Y      LL + I S  +Y N L+ W  + +    + + IIL G K DL +
Sbjct: 69  RFRSVTRSYYRGAAGALLVYDITSRETY-NALTNWLTDARMLASQNIVIILCGNKKDLDA 127
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKK 199
           +          EV  +  S+  +    +    +LE SA   E +++ F+   R  + K
Sbjct: 128 DR---------EVTFLEASRFAQENELM----FLETSALTGEDVEEAFVQCARKILNK 172

>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp Length = 183

Iteration: 1
 Score = 60.8 bits (146), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 82/171 (47%), Gaps = 22/171 (12%)
Query: 35  GKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPN 94
           GK+ L I   +  F  DY PT+ D+Y     +DN+   + + DTAGQE++  +R      
Sbjct: 30  GKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRT 89
Query: 95  TDCFLLCFSIGSTSSYENI--LSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAA 152
            D FL+ +S+   +S+E++    +    +K      P+ILV  K DL    K        
Sbjct: 90  GDGFLIVYSVTDKASFEHVDRFHQLILRVKDR-ESFPMILVANKVDLMHLRK-------- 140
Query: 153 EVDLVSTSQGKKMRRKIKAAEYLECSAK---LNEGLDQVFIAAVRSAVKKQ 200
               V+  QGK+M  K     Y+E SAK   LN  +D+ F   VR  +++Q
Sbjct: 141 ----VTRDQGKEMATKYNIP-YIETSAKDPPLN--VDKTFHDLVR-VIRQQ 183

>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp Length = 178

Iteration: 1
 Score = 60.5 bits (145), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 82/171 (47%), Gaps = 22/171 (12%)
Query: 35  GKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPN 94
           GK+ L I   +  F  DY PT+ D+Y     +DN+   + + DTAGQE++  +R      
Sbjct: 25  GKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRT 84
Query: 95  TDCFLLCFSIGSTSSYENI--LSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAA 152
            D FL+ +S+   +S+E++    +    +K      P+ILV  K DL    K        
Sbjct: 85  GDGFLIVYSVTDKASFEHVDRFHQLILRVKDR-ESFPMILVANKVDLMHLRK-------- 135
Query: 153 EVDLVSTSQGKKMRRKIKAAEYLECSAK---LNEGLDQVFIAAVRSAVKKQ 200
               V+  QGK+M  K     Y+E SAK   LN  +D+ F   VR  +++Q
Sbjct: 136 ----VTRDQGKEMATKYNIP-YIETSAKDPPLN--VDKTFHDLVR-VIRQQ 178

>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From Encephalitozoon Cuniculi Bound To Gdp-Mg2+ Length = 218

Iteration: 1
 Score = 60.1 bits (144), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 53/180 (29%), Positives = 78/180 (43%), Gaps = 17/180 (9%)
Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFD-NYPDTITVDN-KTYDVTLWDTAGQE 82
           K+  +GDG VGKT  +    + +F  +Y  TV   N+P T   D        +WDTAGQE
Sbjct: 13  KICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQE 72
Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCP-KVPIILVGTKADLRS 141
               L+ + Y      +L F + S  + +N L++W  E +     + PI++   K D+++
Sbjct: 73  KKAVLKDVYYIGASGAILFFDVTSRITCQN-LARWVKEFQAVVGNEAPIVVCANKIDIKN 131
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQD 201
             K I KK   EV             K K  EY E SAK        F+   R    + D
Sbjct: 132 RQK-ISKKLVMEV------------LKGKNYEYFEISAKTAHNFGLPFLHLARIFTGRPD 178

>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed With Gdp Length = 162

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 60/117 (51%), Gaps = 3/117 (2%)
Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQED 83
           K+  +G+  VGKT ++     + F  +Y  T+  D    T+ +D     + LWDTAGQE 
Sbjct: 3   KLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQER 62
Query: 84  YERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPK-VPIILVGTKADL 139
           +  L P    ++   ++ + I +  S+EN  +KW  ++ +   K V I LVG K DL
Sbjct: 63  FRSLIPSYIRDSAAAIVVYDITNRQSFENT-TKWIQDILNERGKDVIIALVGNKTDL 118

>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP Length = 183

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 82/171 (47%), Gaps = 22/171 (12%)
Query: 35  GKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPN 94
           GK+ L I   +  F  +Y PT+ D+Y     +DN+   + + DTAGQE++  +R      
Sbjct: 30  GKSALTIQFFQKIFVDEYDPTIEDSYRKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRT 89
Query: 95  TDCFLLCFSIGSTSSYENI--LSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAA 152
            D FL+ +S+   +S+E++    +    +K      P+ILV  K DL    K        
Sbjct: 90  GDGFLIVYSVTDKASFEHVDRFHQLILRVKDR-ESFPMILVANKVDLMHLRK-------- 140
Query: 153 EVDLVSTSQGKKMRRKIKAAEYLECSAK---LNEGLDQVFIAAVRSAVKKQ 200
               V+  QGK+M  K     Y+E SAK   LN  +D+ F   VR  +++Q
Sbjct: 141 ----VTRDQGKEMATKYNIP-YIETSAKDPPLN--VDKTFHDLVR-VIRQQ 183

>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp (Type 1) Length = 183

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 82/171 (47%), Gaps = 22/171 (12%)
Query: 35  GKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPN 94
           GK+ L I   +  F  +Y PT+ D+Y     +DN+   + + DTAGQE++  +R      
Sbjct: 30  GKSALTIQFFQKIFVPEYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRT 89
Query: 95  TDCFLLCFSIGSTSSYENI--LSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAA 152
            D FL+ +S+   +S+E++    +    +K      P+ILV  K DL    K        
Sbjct: 90  GDGFLIVYSVTDKASFEHVDRFHQLILRVKDR-ESFPMILVANKVDLMHLRK-------- 140
Query: 153 EVDLVSTSQGKKMRRKIKAAEYLECSAK---LNEGLDQVFIAAVRSAVKKQ 200
               V+  QGK+M  K     Y+E SAK   LN  +D+ F   VR  +++Q
Sbjct: 141 ----VTRDQGKEMATKYNIP-YIETSAKDPPLN--VDKTFHDLVR-VIRQQ 183

>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With Gtp Length = 167

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 55/107 (51%), Gaps = 3/107 (2%)
Query: 35  GKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPN 94
           GK+ L +      F   Y PT+ D Y   I VD+    + + DTAG E +  +R +   N
Sbjct: 15  GKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKN 74
Query: 95  TDCFLLCFSIGSTSSYENI--LSKWYPELKHHCPKVPIILVGTKADL 139
              F+L +S+ +  S+++I  +      +K +  KVP+ILVG K DL
Sbjct: 75  GQGFILVYSLVNQQSFQDIKPMRDQIIRVKRY-EKVPVILVGNKVDL 120

>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp Length = 201

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/169 (23%), Positives = 77/169 (45%), Gaps = 15/169 (8%)
Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
            K+  VGD  VGKTC++       F      T+  D    T+ +  K   + +WDTAGQE
Sbjct: 30  FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 89
Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRS 141
            +  +    Y + +  +L + I   SS+ ++   W  +++ +    +  +L+G K+DL  
Sbjct: 90  RFRTITQSYYRSANGAILAYDITKRSSFLSV-PHWIEDVRKYAGSNIVQLLIGNKSDL-- 146
Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFI 190
                     +E+  VS ++ + +         +E SAK +  +++ F+
Sbjct: 147 ----------SELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFL 185

>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp Length = 195

Iteration: 1
 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 77/176 (43%), Gaps = 20/176 (11%)
Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVP-TVFDNYPDTITVDNKTYDVTLWDTAGQE 82
            KV  VG+  VGK+ L  T    +  + + P    D Y   I VD +   + ++D   Q 
Sbjct: 24  FKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQG 83
Query: 83  DYER-LRPMSYPNTDCFLLCFSIGSTSSYENI---LSKWYPELKHHCPKVPIILVGTKAD 138
           D    LR       D FL+ FS+    S+  +   L +      HH   +P+ILVG K+D
Sbjct: 84  DAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHH--DLPVILVGNKSD 141
Query: 139 LRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
           L            A    VS  +G+ +   + + +++E SA L+    ++F  AVR
Sbjct: 142 L------------ARSREVSLEEGRHLAGTL-SCKHIETSAALHHNTRELFEGAVR 184

>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 82/184 (44%), Gaps = 23/184 (12%)
Query: 25  KVTTVGDGMVGKTCL--LITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTL---WDTA 79
           +V  +G+  VGK+ L  +     +   +D      D Y  T+ VD ++  + L   W+  
Sbjct: 8   RVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENK 67
Query: 80  GQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKH--HCPKVPIILVGTKA 137
           G+ ++  L        D +L+ +SI   +S+E   S+   +L+       +PIILVG K+
Sbjct: 68  GENEW--LHDHXMQVGDAYLIVYSITDRASFEKA-SELRIQLRRARQTEDIPIILVGNKS 124
Query: 138 DLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV 197
           DL    +            VS S+G+     +   +++E SA +   + ++F   VR   
Sbjct: 125 DLVRXRE------------VSVSEGRAX-AVVFDCKFIETSAAVQHNVKELFEGIVRQVR 171
Query: 198 KKQD 201
            ++D
Sbjct: 172 LRRD 175

>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 50.4 bits (119), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 82/184 (44%), Gaps = 23/184 (12%)
Query: 25  KVTTVGDGMVGKTCL--LITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTL---WDTA 79
           +V  +G+  VGK+ L  +     +   +D      D Y  T+ VD ++  + L   W+  
Sbjct: 8   RVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENK 67
Query: 80  GQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKH--HCPKVPIILVGTKA 137
           G+ ++  L        D +L+ +SI   +S+E   S+   +L+       +PIILVG K+
Sbjct: 68  GENEW--LHDHCMQVGDAYLIVYSITDRASFEKA-SELRIQLRRARQTEDIPIILVGNKS 124
Query: 138 DLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV 197
           DL    +            VS S+G+     +   +++E SA +   + ++F   VR   
Sbjct: 125 DLVRXRE------------VSVSEGRAX-AVVFDXKFIETSAAVQHNVKELFEGIVRQVR 171
Query: 198 KKQD 201
            ++D
Sbjct: 172 LRRD 175

>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem Length = 211

Iteration: 1
 Score = 50.1 bits (118), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 88/198 (44%), Gaps = 25/198 (12%)
Query: 12  DKDVKSKSVHKALKVTTVGDGMVGKTCL--LITHTENKFPTDYVPTVFDNYPDTITVDNK 69
           D  + S+S +   +V  +G+  VGK+ L  +     +   +D      D Y  T+ VD +
Sbjct: 26  DSVISSESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGE 85
Query: 70  TYDVTL---WDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKH--H 124
           +  + L   W+  G+ ++  L        D +L+ +SI   +S+E   S+   +L+    
Sbjct: 86  SATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKA-SELRIQLRRARQ 142
Query: 125 CPKVPIILVGTKADL-RSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNE 183
              +PIILVG K+DL R    ++ + +A  V              +   +++E SA +  
Sbjct: 143 TEDIPIILVGNKSDLVRCREVSVSEGRACAV--------------VFDCKFIETSAAVQH 188
Query: 184 GLDQVFIAAVRSAVKKQD 201
            + ++F   VR    ++D
Sbjct: 189 NVKELFEGIVRQVRLRRD 206

>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive (Gdp-3'p- Bound) Form Length = 178

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 54/124 (43%), Gaps = 7/124 (5%)
Query: 22  KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITV-DNKTYDVTLWDTA 79
           + LK+  +GDG  GKT L     +  F   Y  T+  D +   IT+  N    + +WD  
Sbjct: 5   RQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIG 64
Query: 80  GQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELK---HHCPKVPII-LVGT 135
           GQ    ++           LL + I +  S+EN L  WY  +K         P++ LVG 
Sbjct: 65  GQTIGGKMLDKYIYGAQGVLLVYDITNYQSFEN-LEDWYTVVKKVSEESETQPLVALVGN 123
Query: 136 KADL 139
           K DL
Sbjct: 124 KIDL 127

>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex Length = 169

Iteration: 1
 Score = 47.0 bits (110), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 76/178 (42%), Gaps = 24/178 (13%)
Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVF---DNYPDTITVDNKTYDVTLWDTAG 80
            KV  VG+  VGK+ L    T      D+   +    D Y   I VD +   + ++D   
Sbjct: 3   FKVMLVGESGVGKSTL--AGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWE 60
Query: 81  QEDYER-LRPMSYPNTDCFLLCFSIGSTSSYENI---LSKWYPELKHHCPKVPIILVGTK 136
           Q D    L+       D FL+ FS+    S+  +   L +      HH   +P+ILVG K
Sbjct: 61  QGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHH--DLPVILVGNK 118
Query: 137 ADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
           +DL    +            VS  +G+ +   + + +++E SA L+    ++F  AVR
Sbjct: 119 SDLARSRE------------VSLEEGRHLAGTL-SCKHIETSAALHHNTRELFEGAVR 163

>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp Length = 174

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/178 (23%), Positives = 79/178 (44%), Gaps = 25/178 (14%)
Query: 25  KVTTVGDGMVGKTCL--LITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTL---WDTA 79
           +V  +G+  VGK+ L  +     +   +D      D Y  T+ VD ++  + L   W+  
Sbjct: 8   RVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENK 67
Query: 80  GQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKH--HCPKVPIILVGTKA 137
           G+ ++  L        D +L+ +SI   +S+E   S+   +L+       +PIILVG K+
Sbjct: 68  GENEW--LHDHCMQVGDAYLIVYSITDRASFEK-ASELRIQLRRARQTEDIPIILVGNKS 124
Query: 138 DL-RSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
           DL R    ++ + +A  V              +   +++E SA +   + ++F   VR
Sbjct: 125 DLVRCREVSVSEGRACAV--------------VFDCKFIETSAAVQHNVKELFEGIVR 168

>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase Length = 174

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 84/192 (43%), Gaps = 26/192 (13%)
Query: 15  VKSKSVHKALKVTTVGDGMVGKTCL--LITHTENKFPTDYVPTVFDNYPDTITVDNKTYD 72
           V  +SV+K L +   G   VGK+ L  +    E+    +     +D    +I VD +   
Sbjct: 2   VSDESVYKVLLLGAPG---VGKSALARIFGGVEDGPEAEAAGHTYDR---SIVVDGEEAS 55
Query: 73  VTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKH--HCPKVPI 130
           + ++D   Q+    L        D +++ +S+    S+E   S+   +L+       VPI
Sbjct: 56  LMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEK-ASELRVQLRRARQTDDVPI 114
Query: 131 ILVGTKADL-RSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVF 189
           ILVG K+DL RS   ++D+ +A  V              +   +++E SA L+  +  +F
Sbjct: 115 ILVGNKSDLVRSREVSVDEGRACAV--------------VFDCKFIETSAALHHNVQALF 160
Query: 190 IAAVRSAVKKQD 201
              VR    ++D
Sbjct: 161 EGVVRQIRLRRD 172

>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound To Gdp Length = 180

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 76/176 (43%), Gaps = 20/176 (11%)
Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDY-VPTVFDNYPDTITVDNKTYDVTLWDTAGQE 82
            KV  +G+  VGK+ L  T    +    + +    D Y   I VD +   + ++D   Q 
Sbjct: 13  FKVMLLGESGVGKSTLAGTFGGLQGDNAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQG 72
Query: 83  DYER-LRPMSYPNTDCFLLCFSIGSTSSYENI---LSKWYPELKHHCPKVPIILVGTKAD 138
           D    L+       D FL+ FS+    S+  +   L +      HH   +P+ILVG K+D
Sbjct: 73  DAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHH--DLPVILVGNKSD 130
Query: 139 LRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
           L    +            VS  +G+ +   + + +++E SA L+    ++F  AVR
Sbjct: 131 LARSRE------------VSLEEGRHLAGTL-SCKHIETSAALHHNTRELFEGAVR 173

>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp Length = 175

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 77/174 (44%), Gaps = 28/174 (16%)
Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
           +V  +GD  VGKT L       +    +     D Y  T+TVD +   + + DT   E  
Sbjct: 6   RVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKL 65
Query: 85  ERLRPMSYPNTDC------FLLCFSIGSTSSYENILSKWYPELK--HHCPKVPIILVGTK 136
           ++    S+    C      +++ +SI    S+E+  S+   +L+  H    VPIILVG K
Sbjct: 66  DK----SWSQESCLQGGSAYVIVYSIADRGSFESA-SELRIQLRRTHQADHVPIILVGNK 120
Query: 137 ADL-RSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVF 189
           ADL R    ++++ +A  V              +   +++E SA L   + ++F
Sbjct: 121 ADLARCREVSVEEGRACAV--------------VFDCKFIETSATLQHNVAELF 160

>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp Length = 176

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/190 (24%), Positives = 81/190 (42%), Gaps = 23/190 (12%)
Query: 17  SKSVHKALKVTTVGDGMVGKTCL--LITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVT 74
           S S     KV  +G   VGK+ L  +    E+    +     +D    +I VD +   + 
Sbjct: 1   SMSDESVYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDR---SIVVDGEEASLM 57
Query: 75  LWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKH--HCPKVPIIL 132
           ++D   Q+    L        D +++ +S+    S+E   S+   +L+       VPIIL
Sbjct: 58  VYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKA-SELRVQLRRARQTDDVPIIL 116
Query: 133 VGTKADL-RSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIA 191
           VG K+DL RS   ++D+ +A  V              +   +++E SA L+  +  +F  
Sbjct: 117 VGNKSDLVRSREVSVDEGRACAV--------------VFDCKFIETSAALHHNVQALFEG 162
Query: 192 AVRSAVKKQD 201
            VR    ++D
Sbjct: 163 VVRQIRLRRD 172

>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum, Pfb0500c Length = 208

Iteration: 1
 Score = 43.5 bits (101), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 75  LWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVG 134
           +WDTAGQE Y  + P+ Y    C ++ F I ++++ +     W  +LK     + IILV 
Sbjct: 97  IWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDR-AKTWVNQLKISSNYI-IILVA 154
Query: 135 TKAD 138
            K D
Sbjct: 155 NKID 158

>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex Length = 166

Iteration: 1
 Score = 43.1 bits (100), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 76/175 (43%), Gaps = 23/175 (13%)
Query: 25  KVTTVGDGMVGKTCL--LITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQE 82
           KV  +G   VGK+ L  +    E+    +     +D    +I VD +   + ++D   Q+
Sbjct: 4   KVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDR---SIVVDGEEASLMVYDIWEQD 60
Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKH--HCPKVPIILVGTKADL- 139
               L        D +++ +S+    S+E   S+   +L+       VPIILVG K+DL 
Sbjct: 61  GGRWLPGHCMAMGDAYVIVYSVTDKGSFEKA-SELRVQLRRARQTDDVPIILVGNKSDLV 119
Query: 140 RSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
           RS   ++D+ +A  V              +   +++E SA L+  +  +F   VR
Sbjct: 120 RSREVSVDEGRACAV--------------VFDCKFIETSAALHHNVQALFEGVVR 160

>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals A Dimeric Gtpase Length = 171

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 52/127 (40%), Gaps = 8/127 (6%)
Query: 25  KVTTVGDGMVGKTCLLITHTENK-----FPTDYVPTVFDNYPDTITVDNKTYDVTL--WD 77
           K+  VG+   GKT LL    + K       +  V     ++P  I  D +  D+ L  WD
Sbjct: 2   KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIR-DKRKRDLVLNVWD 60
Query: 78  TAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKA 137
            AG+E++    P        +L  + +    +  +    W   +K      P+ILVGT  
Sbjct: 61  FAGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPVILVGTHL 120
Query: 138 DLRSENK 144
           D+  E +
Sbjct: 121 DVSDEKQ 127

>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's Disease-associated Leucine-rich Repeat Kinase 2 Reveals A Dimeric Gtpase Length = 184

Iteration: 1
 Score = 40.4 bits (93), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 52/127 (40%), Gaps = 8/127 (6%)
Query: 25  KVTTVGDGMVGKTCLLITHTENK-----FPTDYVPTVFDNYPDTITVDNKTYDVTL--WD 77
           K+  VG+   GKT LL    + K       +  V     ++P  I  D +  D+ L  WD
Sbjct: 4   KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIR-DKRKRDLVLNVWD 62
Query: 78  TAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKA 137
            AG+E++    P        +L  + +    +  +    W   +K      P+ILVGT  
Sbjct: 63  FAGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPVILVGTHL 122
Query: 138 DLRSENK 144
           D+  E +
Sbjct: 123 DVSDEKQ 129

>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas Length = 208

Iteration: 1
 Score = 40.0 bits (92), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 66/145 (45%), Gaps = 12/145 (8%)
Query: 13  KDVKSKSVHKAL--KVTTVGDGMVGKTCL--LITHTENKFPTDYVPTV-FDNYPDTITVD 67
           K+VK   +   L  KV  VG+  VGK+ L  + T   +KF  DY  T   +     +T+ 
Sbjct: 8   KEVKPIDITATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIP 67
Query: 68  NKTYDVTLW--DTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC 125
           + T  V L+  DTAG + Y+      +      +L F + S  S+E+    W+  LK   
Sbjct: 68  DTTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESC-KAWFELLKSAR 126
Query: 126 P--KVPI--ILVGTKADLRSENKTI 146
           P  + P+  +LV  K DL  +   +
Sbjct: 127 PDRERPLRAVLVANKTDLPPQRHQV 151

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	205
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	4e-99
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	7e-98
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	3e-97
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	1e-96
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	2e-96
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	5e-96
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	2e-95
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	2e-95
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	2e-94
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	3e-93
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	6e-92
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	7e-90
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	5e-86
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	2e-83
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	4e-47
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	7e-47
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	1e-46
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	2e-46
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	8e-46
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	9e-46
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	2e-45
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	2e-45
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	3e-45
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	5e-45
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	6e-45
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	4e-44
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	9e-44
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	1e-43
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	1e-43
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	5e-43
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	3e-42
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	1e-41
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	4e-41
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	4e-41
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	8e-41
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	1e-39
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	2e-39
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	3e-39
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	2e-38
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	5e-37
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	8e-37
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	1e-36
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	1e-35
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	2e-34
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	3e-34
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	4e-34
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	7e-34
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	2e-33
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	1e-32
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	2e-32
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	3e-32
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	4e-32
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	4e-32
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	4e-32
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	6e-32
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	6e-32
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	7e-32
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	9e-32
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	9e-32
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	1e-31
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	1e-31
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	1e-31
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	2e-31
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	2e-31
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	2e-31
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	2e-31
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	3e-31
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	3e-31
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	5e-31
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	5e-31
3bbp_A	211	RAB-6, RAS-related protein RAB-6A; golgi complex,	5e-31
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	9e-31
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	2e-30
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	2e-30
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	4e-30
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	5e-30
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	5e-30
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	6e-30
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	9e-30
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	1e-29
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	1e-28
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	7e-28
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	8e-26
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	2e-24
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	1e-18
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	2e-10
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	3e-08
3llu_A	196	RAS-related GTP-binding protein C; structural geno	2e-07
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	7e-07
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	5e-04
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	5e-04

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212

 Score =  285 bits (731), Expect = 4e-99
 Identities = 93/201 (46%), Positives = 130/201 (64%), Gaps = 16/201 (7%)

Query: 17  SKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLW 76
             SV K +K  TVGDG VGKTC+LI +T NKFPTDY+PTVFDN+   + VD +  ++ LW
Sbjct: 3   HMSVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLW 62

Query: 77  DTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTK 136
           DTAGQEDY RLRP+SY   D F+L FS+ S +SYEN+L KW PEL+   P VPI+LVGTK
Sbjct: 63  DTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTK 122

Query: 137 ADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSA 196
            DLR +   +        ++++++QG+++R++I AA Y+ECS+K  + +  VF  A++  
Sbjct: 123 LDLRDDKGYLADHT----NVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVV 178

Query: 197 V------------KKQDKSCC 205
           +            K   +S C
Sbjct: 179 LQPPRRKEVPRRRKNHRRSGC 199

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214

 Score =  282 bits (722), Expect = 7e-98
 Identities = 77/188 (40%), Positives = 119/188 (63%)

Query: 16  KSKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTL 75
           ++    +++KV  VGDG  GKT LL+   +  FP  Y PTVF+ Y   + V  K   + +
Sbjct: 27  EAPPGVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHI 86

Query: 76  WDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGT 135
           WDTAGQ+DY+RLRP+ YP+    LLCF + S +S++NI ++WYPE+ H C KVPII+VG 
Sbjct: 87  WDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGC 146

Query: 136 KADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRS 195
           K DLR +   ++K +   ++ V+  +G++M R + A  YLECSA+L++ +  VF  A   
Sbjct: 147 KTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAEV 206

Query: 196 AVKKQDKS 203
           A+  + ++
Sbjct: 207 ALSSRGRN 214

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201

 Score =  280 bits (717), Expect = 3e-97
 Identities = 81/181 (44%), Positives = 122/181 (67%)

Query: 22  KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
           + +K   VGDG VGKT L++++T N +PT+Y+PT FDN+   ++VD +   + L DTAGQ
Sbjct: 19  RGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQ 78

Query: 82  EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
           +++++LRP+ Y NTD FLLCFS+ S SS++N+  KW PE++ HCPK PIILVGT++DLR 
Sbjct: 79  DEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLRE 138

Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQD 201
           + K + +    +   V     K +  +IKAA Y+ECSA   + L +VF AA+ + ++  D
Sbjct: 139 DVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAIVAGIQYSD 198

Query: 202 K 202
            
Sbjct: 199 T 199

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194

 Score =  278 bits (712), Expect = 1e-96
 Identities = 73/187 (39%), Positives = 113/187 (60%), Gaps = 10/187 (5%)

Query: 16  KSKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTL 75
           K ++  KALK+  VGDG VGKTCLL+  ++ + PT YVPTVF+N+   +   N+ + + L
Sbjct: 16  KIENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHL 75

Query: 76  WDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGT 135
           WDTAGQE+Y+RLRP+SY ++D  LLCF++ + +S++NI +KW PE+KH+      +LVG 
Sbjct: 76  WDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGL 135

Query: 136 KADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRS 195
           K DLR +              V+  +G  + +K+    Y+E S+    GL++VF  +V  
Sbjct: 136 KVDLRKDGSDD----------VTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDC 185

Query: 196 AVKKQDK 202
               +  
Sbjct: 186 IFSNKPV 192

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207

 Score =  277 bits (711), Expect = 2e-96
 Identities = 95/180 (52%), Positives = 123/180 (68%)

Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQED 83
            K+  VGDG  GKTCLLI  ++++FP  YVPTVF+NY   I VD K  ++ LWDTAGQED
Sbjct: 26  KKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQED 85

Query: 84  YERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSEN 143
           Y+RLRP+SYP+TD  L+CFS+ S  S ENI  KW PE+KH CP VPIILV  K DLRS+ 
Sbjct: 86  YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDE 145

Query: 144 KTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQDKS 203
               +    + + V T  G+ M  +I+A +YLECSAK  EG+ +VF  A R+A++K+  S
Sbjct: 146 HVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQKRYGS 205

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182

 Score =  276 bits (707), Expect = 5e-96
 Identities = 94/182 (51%), Positives = 125/182 (68%), Gaps = 2/182 (1%)

Query: 17  SKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLW 76
           S S  + +K  TVGDG VGKTCLLI++T N FPTDYVPTVFDN+   + V+  T ++ LW
Sbjct: 2   SMSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLW 61

Query: 77  DTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTK 136
           DTAGQEDY RLRP+SY   D F+L FS+ S +SYEN+  KW PELKH+ P VPI+LVGTK
Sbjct: 62  DTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTK 121

Query: 137 ADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSA 196
            DLR + +       A    ++T QG+++++ I A  Y+ECS+K  E +  VF AA+R  
Sbjct: 122 LDLRDDKQFFIDHPGAV--PITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVV 179

Query: 197 VK 198
           ++
Sbjct: 180 LQ 181

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201

 Score =  275 bits (705), Expect = 2e-95
 Identities = 93/175 (53%), Positives = 119/175 (68%)

Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQED 83
            K+  VGDG  GKTCLLI  ++++FP  YVPTVF+NY   I VD K  ++ LWDTAGQED
Sbjct: 26  KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQED 85

Query: 84  YERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSEN 143
           Y+RLRP+SYP+TD  L+CFSI S  S ENI  KW PE+KH CP VPIILVG K DLR + 
Sbjct: 86  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDE 145

Query: 144 KTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVK 198
            T  +    + + V + +G+ M  +I A  YLECSAK  EG+ +VF  A R+ ++
Sbjct: 146 HTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQ 200

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204

 Score =  275 bits (704), Expect = 2e-95
 Identities = 98/176 (55%), Positives = 129/176 (73%)

Query: 22  KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
           +A+K   VGDG VGKTCLLI++T N FP +Y+PTVFDNY   + VD K  ++ LWDTAGQ
Sbjct: 29  QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 88

Query: 82  EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
           EDY+RLRP+SYP TD FL+CFS+ S +S+EN+ +KWYPE++HHCP  PIILVGTK DLR 
Sbjct: 89  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 148

Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV 197
           +  TI+K K  ++  ++  QG  M ++I A +YLECSA    GL  VF  A+R+ +
Sbjct: 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 204

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205

 Score =  273 bits (699), Expect = 2e-94
 Identities = 68/177 (38%), Positives = 106/177 (59%), Gaps = 1/177 (0%)

Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQED 83
            K+  VGD   GKT LL    ++ FP +YVPTVF+NY  +  +D +  +++LWDT+G   
Sbjct: 29  CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPY 88

Query: 84  YERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSEN 143
           Y+ +RP+SYP++D  L+CF I    + +++L KW  E++  CP   ++LVG K+DLR++ 
Sbjct: 89  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDV 148

Query: 144 KTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNE-GLDQVFIAAVRSAVKK 199
            T+ +        VS  QG  M ++I AA Y+ECSA  +E  +  +F  A  + V K
Sbjct: 149 STLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVNK 205

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184

 Score =  269 bits (689), Expect = 3e-93
 Identities = 68/177 (38%), Positives = 106/177 (59%), Gaps = 1/177 (0%)

Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQED 83
            K+  VGD   GKT LL    ++ FP +YVPTVF+NY  +  +D +  +++LWDT+G   
Sbjct: 8   CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPY 67

Query: 84  YERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSEN 143
           Y+ +RP+SYP++D  L+CF I    + +++L KW  E++  CP   ++LVG K+DLR++ 
Sbjct: 68  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDV 127

Query: 144 KTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNE-GLDQVFIAAVRSAVKK 199
            T+ +        VS  QG  M ++I AA Y+ECSA  +E  +  +F  A  + V K
Sbjct: 128 STLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVNK 184

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194

 Score =  266 bits (681), Expect = 6e-92
 Identities = 83/175 (47%), Positives = 121/175 (69%)

Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQED 83
           LK   VGDG VGKTCLL+++  + FP +YVPTVFD+Y  ++TV  K Y + L+DTAGQED
Sbjct: 19  LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQED 78

Query: 84  YERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSEN 143
           Y+RLRP+SYP TD FL+CFS+ + +S++N+  +W PELK + P VP +L+GT+ DLR + 
Sbjct: 79  YDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDP 138

Query: 144 KTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVK 198
           KT+ +    +   +   QG+K+ ++I A  Y+ECSA   +GL  VF  A+ + + 
Sbjct: 139 KTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAILT 193

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186

 Score =  260 bits (667), Expect = 7e-90
 Identities = 97/181 (53%), Positives = 128/181 (70%)

Query: 22  KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
           +A+K   VGDG VGKTCLLI++T N FP +Y+PTVFDNY   + VD K  ++ LWDTAGQ
Sbjct: 4   QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 63

Query: 82  EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
           EDY+RLRP+SYP TD  L+CFS+ S +S+EN+ +KWYPE++HHCP  PIILVGTK DLR 
Sbjct: 64  EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 123

Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQD 201
           +  TI+K K  ++  ++  QG  M ++I A +YLECSA    GL  VF  A+R+ +    
Sbjct: 124 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPP 183

Query: 202 K 202
            
Sbjct: 184 V 184

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214

 Score =  252 bits (644), Expect = 5e-86
 Identities = 60/193 (31%), Positives = 101/193 (52%), Gaps = 5/193 (2%)

Query: 17  SKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLW 76
            + V    K+  VGD   GKT +L    ++ +P  YVPTVF+NY   +  + +  +++LW
Sbjct: 21  PQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLW 80

Query: 77  DTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTK 136
           DT+G   Y+ +RP+ Y ++D  LLCF I    + ++ L KW  E+  +CP   ++L+G K
Sbjct: 81  DTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCK 140

Query: 137 ADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNE-GLDQVFIAAVRS 195
            DLR++  T+ +    +   +S  QG  + +++ A  YLE SA  +E  +  +F  A   
Sbjct: 141 TDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASML 200

Query: 196 AV----KKQDKSC 204
            +        KS 
Sbjct: 201 CLNKPSPLPQKSP 213

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* Length = 332

 Score =  249 bits (638), Expect = 2e-83
 Identities = 94/183 (51%), Positives = 128/183 (69%)

Query: 17  SKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLW 76
            ++  + +K   VGDG VGKTCLLI++T N FP +Y+PTVFDNY   + VD K  ++ LW
Sbjct: 149 DEAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLW 208

Query: 77  DTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTK 136
           DTAG EDY+RLRP+SYP TD FL+CFS+ S +S+ ++ +KWYPE++HHCP  PIILVGTK
Sbjct: 209 DTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTK 268

Query: 137 ADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSA 196
            DLR +  TI+K K  ++  ++  QG  M ++I A +YLECSA    GL  VF  A+R+ 
Sbjct: 269 LDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 328

Query: 197 VKK 199
           +  
Sbjct: 329 LCP 331

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201

 Score =  152 bits (387), Expect = 4e-47
 Identities = 54/207 (26%), Positives = 91/207 (43%), Gaps = 21/207 (10%)

Query: 6   QTTKGGDKDVKSKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTIT 65
            ++   +   +   + +  KV  +G   VGKT L     E +F   Y PTV + Y   +T
Sbjct: 7   HSSGRENLYFQGMPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVT 66

Query: 66  VDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELK--H 123
           +    + + L DTAGQ++Y  L          ++L +S+ S  S++ I    Y +L   H
Sbjct: 67  LGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVI-ESLYQKLHEGH 125

Query: 124 HCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNE 183
              +VP++LVG KADL  E +            V   +GKK+     A  ++E SA+ N+
Sbjct: 126 GKTRVPVVLVGNKADLSPERE------------VQAVEGKKLAESWGAT-FMESSARENQ 172

Query: 184 GLDQVFIAAVR-----SAVKKQDKSCC 205
               +F   ++          Q++ C 
Sbjct: 173 LTQGIFTKVIQEIARVENSYGQERRCH 199

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184

 Score =  151 bits (384), Expect = 7e-47
 Identities = 37/181 (20%), Positives = 74/181 (40%), Gaps = 19/181 (10%)

Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQED 83
           LKV  VG+   GK+ L+  +    +  +  P     +   I VD ++Y + + D  G  +
Sbjct: 21  LKVGIVGNLSSGKSALVHRYLTGTYVQEESPEG-GRFKKEIVVDGQSYLLLIRDEGGPPE 79

Query: 84  YERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHH--CPKVPIILVGTKADLRS 141
            +          D  +  FS+    S++ +   ++  L       +VP++LVGT+  + +
Sbjct: 80  LQFAA-----WVDAVVFVFSLEDEISFQTV-YNYFLRLCSFRNASEVPMVLVGTQDAISA 133

Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQD 201
            N  +          +  S+ +K+   +K   Y E  A     +++VF    +  V  + 
Sbjct: 134 ANPRV----------IDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVVALRK 183

Query: 202 K 202
           K
Sbjct: 184 K 184

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181

 Score =  150 bits (382), Expect = 1e-46
 Identities = 56/189 (29%), Positives = 86/189 (45%), Gaps = 16/189 (8%)

Query: 17  SKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLW 76
                +  K+  VG G VGK+ L I   ++ F +DY PT+ D+Y    +VD     + + 
Sbjct: 3   DPPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDIL 62

Query: 77  DTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELK--HHCPKVPIILVG 134
           DTAGQE++  +R         FLL F+I    S+  +  K + ++         P++LVG
Sbjct: 63  DTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEV-GKLFTQILRVKDRDDFPVVLVG 121

Query: 135 TKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
            KADL S+ +            V  S+          A Y E SAKL   +D+ F   VR
Sbjct: 122 NKADLESQRQ------------VPRSEASAFGASHHVA-YFEASAKLRLNVDEAFEQLVR 168

Query: 195 SAVKKQDKS 203
           +  K Q++ 
Sbjct: 169 AVRKYQEQE 177

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181

 Score =  150 bits (381), Expect = 2e-46
 Identities = 55/184 (29%), Positives = 86/184 (46%), Gaps = 16/184 (8%)

Query: 22  KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
           K+ K+  +G   VGK+ L I   E +F   Y PT+ + +   ITV+ + Y + L DTAGQ
Sbjct: 5   KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQ 64

Query: 82  EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELK--HHCPKVPIILVGTKADL 139
           ++Y         + + ++L +S+ S  S+E I    + +L       ++PI+LVG K DL
Sbjct: 65  DEYSIFPQTYSIDINGYILVYSVTSIKSFEVI-KVIHGKLLDMVGKVQIPIMLVGNKKDL 123

Query: 140 RSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKK 199
             E              +S  +GK +     AA +LE SAK N+    VF   +  A K 
Sbjct: 124 HMERV------------ISYEEGKALAESWNAA-FLESSAKENQTAVDVFRRIILEAEKM 170

Query: 200 QDKS 203
               
Sbjct: 171 DGAC 174

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172

 Score =  148 bits (376), Expect = 8e-46
 Identities = 48/179 (26%), Positives = 81/179 (45%), Gaps = 17/179 (9%)

Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
           +V   G G VGK+ L++   +  F   Y+PTV D Y   I+ D     + + DT G   +
Sbjct: 5   RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQF 64

Query: 85  ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPEL---KHHCPKVPIILVGTKADLRS 141
             ++ +S      F+L +SI S  S E +    Y ++   K     +PI+LVG K D   
Sbjct: 65  PAMQRLSISKGHAFILVYSITSRQSLEEL-KPIYEQICEIKGDVESIPIMLVGNKCDESP 123

Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQ 200
             +            V +S+ + + R  K A ++E SAKLN  + ++F   +    ++ 
Sbjct: 124 SRE------------VQSSEAEALARTWKCA-FMETSAKLNHNVKELFQELLNLEKRRT 169

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167

 Score =  148 bits (375), Expect = 9e-46
 Identities = 53/172 (30%), Positives = 84/172 (48%), Gaps = 16/172 (9%)

Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
           KV  +G G VGK+ L +      F   Y PT+ D Y   I VD+    + + DTAG E +
Sbjct: 5   KVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQF 64

Query: 85  ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELK--HHCPKVPIILVGTKADLRSE 142
             +R +   N   F+L +S+ +  S+++I      ++       KVP+ILVG K DL SE
Sbjct: 65  ASMRDLYIKNGQGFILVYSLVNQQSFQDI-KPMRDQIIRVKRYEKVPVILVGNKVDLESE 123

Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
            +            VS+S+G+ +  +     ++E SAK    +D++F   VR
Sbjct: 124 RE------------VSSSEGRALAEEWGCP-FMETSAKSKTMVDELFAEIVR 162

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166

 Score =  147 bits (373), Expect = 2e-45
 Identities = 55/178 (30%), Positives = 91/178 (51%), Gaps = 18/178 (10%)

Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
           K+  VG G VGK+ L I   +N F  +  PT+ D+Y   + +D +T  + + DTAGQE+Y
Sbjct: 5   KLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64

Query: 85  ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHH--CPKVPIILVGTKADLRSE 142
             +R       + FL  F+I +T S+E+I  ++  ++K       VP++LVG K+DL   
Sbjct: 65  SAMRDQYMRTGEGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKSDL--A 121

Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQ 200
            +T           V + Q + + R      Y+E SAK  +G++  F   VR  +++ 
Sbjct: 122 ART-----------VESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVR-EIRQH 166

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167

 Score =  147 bits (373), Expect = 2e-45
 Identities = 49/172 (28%), Positives = 80/172 (46%), Gaps = 15/172 (8%)

Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
           K+  +G G VGK+ L +   +  F   Y PT+ D+Y   + VD +   + + DTAG E +
Sbjct: 5   KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQF 64

Query: 85  ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELK--HHCPKVPIILVGTKADLRSE 142
             +R +   N   F L +SI + S++ ++      ++        VP+ILVG K DL  E
Sbjct: 65  TAMRDLYMKNGQGFALVYSITAQSTFNDL-QDLREQILRVKDTEDVPMILVGNKCDLEDE 123

Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
                         V   QG+ + R+     +LE SAK    ++++F   VR
Sbjct: 124 RV------------VGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVR 163

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187

 Score =  147 bits (373), Expect = 3e-45
 Identities = 52/180 (28%), Positives = 84/180 (46%), Gaps = 16/180 (8%)

Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
           KV  VG G VGK+ L +    ++F  DY PT  D+Y   + +D +   + + DTAGQEDY
Sbjct: 20  KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 79

Query: 85  ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELK--HHCPKVPIILVGTKADLRSE 142
             +R   + + + FL  FSI    S+    + +  ++        VP +LVG K+DL  +
Sbjct: 80  AAIRDNYFRSGEGFLCVFSITEMESFAAT-ADFREQILRVKEDENVPFLLVGNKSDLEDK 138

Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQDK 202
            +            VS  + K    +     Y+E SAK    +D+VF   +R    ++ +
Sbjct: 139 RQ------------VSVEEAKNRAEQWNVN-YVETSAKTRANVDKVFFDLMREIRARKME 185

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190

 Score =  146 bits (372), Expect = 5e-45
 Identities = 54/180 (30%), Positives = 90/180 (50%), Gaps = 17/180 (9%)

Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
           K+  VG G VGK+ L I   +N F  +Y PT+ D+Y   + +D +T  + + DTAGQE+Y
Sbjct: 23  KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 82

Query: 85  ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHH--CPKVPIILVGTKADLRSE 142
             +R       + FL  F+I ++ S+ +I + +  ++K       VP++LVG K DL   
Sbjct: 83  SAMRDQYMRTGEGFLCVFAINNSKSFADI-NLYREQIKRVKDSDDVPMVLVGNKCDL--P 139

Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQDK 202
            +T           V T Q  ++ +      ++E SAK  +G++  F   VR   + + K
Sbjct: 140 TRT-----------VDTKQAHELAKSYGIP-FIETSAKTRQGVEDAFYTLVREIRQYRMK 187

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168

 Score =  146 bits (370), Expect = 6e-45
 Identities = 52/172 (30%), Positives = 81/172 (47%), Gaps = 16/172 (9%)

Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
           KV  VG G VGK+ L +    ++F  DY PT  D+Y   + +D +   + + DTAGQEDY
Sbjct: 6   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 65

Query: 85  ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELK--HHCPKVPIILVGTKADLRSE 142
             +R   + + + FL  FSI    S+    + +  ++        VP +LVG K+DL  +
Sbjct: 66  AAIRDNYFRSGEGFLCVFSITEMESFAAT-ADFREQILRVKEDENVPFLLVGNKSDLEDK 124

Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
            +            VS  + K    +     Y+E SAK    +D+VF   +R
Sbjct: 125 RQ------------VSVEEAKNRADQWNVN-YVETSAKTRANVDKVFFDLMR 163

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189

 Score =  144 bits (366), Expect = 4e-44
 Identities = 60/199 (30%), Positives = 93/199 (46%), Gaps = 30/199 (15%)

Query: 22  KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
              K+  VG   VGK+ L I   +N F  +Y PT+ D+Y   + +D +T  + + DTAGQ
Sbjct: 3   TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQ 62

Query: 82  EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELK--HHCPKVPIILVGTKADL 139
           E+Y  +R       + FL  F+I +T S+E+I   +  ++K       VP++LVG K DL
Sbjct: 63  EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDI-HHYREQIKRVKDSEDVPMVLVGNKCDL 121

Query: 140 RSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR----- 194
              ++T           V T Q + + R      ++E SAK  +G+D  F   VR     
Sbjct: 122 --PSRT-----------VDTKQAQDLARSYGIP-FIETSAKTRQGVDDAFYTLVREIRKH 167

Query: 195 --------SAVKKQDKSCC 205
                      KK+ K+ C
Sbjct: 168 KEKMSKDGKKKKKKSKTKC 186

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206

 Score =  144 bits (365), Expect = 9e-44
 Identities = 53/193 (27%), Positives = 87/193 (45%), Gaps = 16/193 (8%)

Query: 13  KDVKSKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYD 72
              K ++     KV  VG G VGK+ L +    ++F  DY PT  D+Y   + +D +   
Sbjct: 4   NKPKGQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQ 63

Query: 73  VTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELK--HHCPKVPI 130
           + + DTAGQEDY  +R   + + + FL  FSI    S+    + +  ++        VP 
Sbjct: 64  IDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAAT-ADFREQILRVKEDENVPF 122

Query: 131 ILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFI 190
           +LVG K+DL  + +            VS  + K    +     Y+E SAK    +D+VF 
Sbjct: 123 LLVGNKSDLEDKRQ------------VSVEEAKNRAEQWNVN-YVETSAKTRANVDKVFF 169

Query: 191 AAVRSAVKKQDKS 203
             +R    ++ + 
Sbjct: 170 DLMREIRARKMED 182

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199

 Score =  143 bits (363), Expect = 1e-43
 Identities = 44/182 (24%), Positives = 82/182 (45%), Gaps = 18/182 (9%)

Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
           +V   G G VGK+ L++   +  F   Y+PT+ D Y   I+ D     + + DT G   +
Sbjct: 10  RVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQF 69

Query: 85  ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPEL---KHHCPKVPIILVGTKADLRS 141
             ++ +S      F+L FS+ S  S E +    Y  +   K     +P++LVG K D   
Sbjct: 70  PAMQRLSISKGHAFILVFSVTSKQSLEEL-GPIYKLIVQIKGSVEDIPVMLVGNKCDE-- 126

Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQD 201
                 +++      V T + + + ++ K A ++E SAK+N  + ++F   +    ++  
Sbjct: 127 -----TQRE------VDTREAQAVAQEWKCA-FMETSAKMNYNVKELFQELLTLETRRNM 174

Query: 202 KS 203
             
Sbjct: 175 SL 176

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183

 Score =  143 bits (362), Expect = 1e-43
 Identities = 55/178 (30%), Positives = 86/178 (48%), Gaps = 17/178 (9%)

Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
           K+  VGDG VGK+ L I   +  F  DY PT+ D+Y     +DN+   + + DTAGQE++
Sbjct: 20  KLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEF 79

Query: 85  ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHH--CPKVPIILVGTKADLRSE 142
             +R       D FL+ +S+   +S+E++  +++  +         P+ILV  K DL   
Sbjct: 80  SAMREQYMRTGDGFLIVYSVTDKASFEHV-DRFHQLILRVKDRESFPMILVANKVDLMHL 138

Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNE-GLDQVFIAAVRSAVKK 199
            K            V+  QGK+M  K     Y+E SAK     +D+ F   VR   ++
Sbjct: 139 RK------------VTRDQGKEMATKYNIP-YIETSAKDPPLNVDKTFHDLVRVIRQQ 183

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175

 Score =  141 bits (358), Expect = 5e-43
 Identities = 46/183 (25%), Positives = 76/183 (41%), Gaps = 18/183 (9%)

Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
           +V  +GD  VGKT L       +    +     D Y  T+TVD +   + + DT   E  
Sbjct: 6   RVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKL 65

Query: 85  ER--LRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELK--HHCPKVPIILVGTKADLR 140
           ++   +         +++ +SI    S+E+  S+   +L+  H    VPIILVG KADL 
Sbjct: 66  DKSWSQESCLQGGSAYVIVYSIADRGSFESA-SELRIQLRRTHQADHVPIILVGNKADLA 124

Query: 141 SENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQ 200
              +            VS  +G+          ++E SA L   + ++F   VR    ++
Sbjct: 125 RCRE------------VSVEEGRACAVVFDCK-FIETSATLQHNVAELFEGVVRQLRLRR 171

Query: 201 DKS 203
             S
Sbjct: 172 RDS 174

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195

 Score =  140 bits (354), Expect = 3e-42
 Identities = 46/183 (25%), Positives = 78/183 (42%), Gaps = 18/183 (9%)

Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVF-DNYPDTITVDNKTYDVTLWDTAGQED 83
           KV  VG+  VGK+ L  T    +  + + P    D Y   I VD +   + ++D   Q D
Sbjct: 25  KVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGD 84

Query: 84  YE-RLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELK--HHCPKVPIILVGTKADLR 140
               LR       D FL+ FS+    S+  +  +    L+       +P+ILVG K+DL 
Sbjct: 85  AGGWLRDHCLQTGDAFLIVFSVTDRRSFSKV-PETLLRLRAGRPHHDLPVILVGNKSDLA 143

Query: 141 SENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQ 200
              +            VS  +G+ +   +    ++E SA L+    ++F  AVR    ++
Sbjct: 144 RSRE------------VSLEEGRHLAGTLSCK-HIETSAALHHNTRELFEGAVRQIRLRR 190

Query: 201 DKS 203
            ++
Sbjct: 191 GRN 193

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166

 Score =  137 bits (348), Expect = 1e-41
 Identities = 40/172 (23%), Positives = 66/172 (38%), Gaps = 17/172 (9%)

Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
           KV  +G   VGK+ L                    Y  +I VD +   + ++D   Q+  
Sbjct: 4   KVLLLGAPGVGKSALARIFG-GVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGG 62

Query: 85  ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELK--HHCPKVPIILVGTKADLRSE 142
             L        D +++ +S+    S+E   S+   +L+       VPIILVG K+DL   
Sbjct: 63  RWLPGHCMAMGDAYVIVYSVTDKGSFEKA-SELRVQLRRARQTDDVPIILVGNKSDLVRS 121

Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
            +            VS  +G+          ++E SA L+  +  +F   VR
Sbjct: 122 RE------------VSVDEGRACAVVFDCK-FIETSAALHHNVQALFEGVVR 160

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187

 Score =  136 bits (346), Expect = 4e-41
 Identities = 42/183 (22%), Positives = 78/183 (42%), Gaps = 20/183 (10%)

Query: 22  KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
             + +  +G    GK+ L +     +F ++Y P + D Y    TVD++   + + DTA  
Sbjct: 20  LEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADL 79

Query: 82  EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC----PKVPIILVGTKA 137
           +   R           FL+ +S+ S  S+++  S +   L  H       +P +L+G K 
Sbjct: 80  DTP-RNCERYLNWAHAFLVVYSVDSRQSFDSS-SSYLELLALHAKETQRSIPALLLGNKL 137

Query: 138 DLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLN-EGLDQVFIAAVRSA 196
           D+    +            V+ ++G  +  +     + E SA L+ E +  VF  AVR A
Sbjct: 138 DMAQYRQ------------VTKAEGVALAGRFGCL-FFEVSACLDFEHVQHVFHEAVREA 184

Query: 197 VKK 199
            ++
Sbjct: 185 RRE 187

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196

 Score =  136 bits (346), Expect = 4e-41
 Identities = 51/188 (27%), Positives = 85/188 (45%), Gaps = 18/188 (9%)

Query: 16  KSKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTL 75
           +S +    +K+   G   VGK+ L++     +F  +Y PT+   Y    T+D++   + +
Sbjct: 21  QSMAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEI 80

Query: 76  WDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELK--HHCPKVPIILV 133
            DTAGQED    R       + F+L + I    S+E +       L        V +ILV
Sbjct: 81  LDTAGQEDT-IQREGHMRWGEGFVLVYDITDRGSFEEV-LPLKNILDEIKKPKNVTLILV 138

Query: 134 GTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEG-LDQVFIAA 192
           G KADL    +            VST +G+K+  ++  A + ECSA   EG + ++F   
Sbjct: 139 GNKADLDHSRQ------------VSTEEGEKLATELACA-FYECSACTGEGNITEIFYEL 185

Query: 193 VRSAVKKQ 200
            R   +++
Sbjct: 186 CREVRRRR 193

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169

 Score =  135 bits (343), Expect = 8e-41
 Identities = 44/174 (25%), Positives = 72/174 (41%), Gaps = 18/174 (10%)

Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVF-DNYPDTITVDNKTYDVTLWDTAGQED 83
           KV  VG+  VGK+ L  T    +    +      D Y   I VD +   + ++D   Q D
Sbjct: 4   KVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGD 63

Query: 84  YE-RLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELK--HHCPKVPIILVGTKADLR 140
               L+       D FL+ FS+    S+  +  +    L+       +P+ILVG K+DL 
Sbjct: 64  AGGWLQDHCLQTGDAFLIVFSVTDRRSFSKV-PETLLRLRAGRPHHDLPVILVGNKSDLA 122

Query: 141 SENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
              +            VS  +G+ +   +    ++E SA L+    ++F  AVR
Sbjct: 123 RSRE------------VSLEEGRHLAGTLSCK-HIETSAALHHNTRELFEGAVR 163

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211

 Score =  133 bits (338), Expect = 1e-39
 Identities = 44/185 (23%), Positives = 79/185 (42%), Gaps = 23/185 (12%)

Query: 25  KVTTVGDGMVGKTCLLI--THTENKFPTDYVPTVFDNYPDTITVDNKTYDVTL---WDTA 79
           +V  +G+  VGK+ L        +   +D      D Y  T+ VD ++  + L   W+  
Sbjct: 39  RVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENK 98

Query: 80  GQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELK--HHCPKVPIILVGTKA 137
           G+ ++  L        D +L+ +SI   +S+E   S+   +L+       +PIILVG K+
Sbjct: 99  GENEW--LHDHCMQVGDAYLIVYSITDRASFEKA-SELRIQLRRARQTEDIPIILVGNKS 155

Query: 138 DLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV 197
           DL    +            VS S+G+          ++E SA +   + ++F   VR   
Sbjct: 156 DLVRCRE------------VSVSEGRACAVVFDCK-FIETSAAVQHNVKELFEGIVRQVR 202

Query: 198 KKQDK 202
            ++D 
Sbjct: 203 LRRDS 207

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221

 Score =  133 bits (337), Expect = 2e-39
 Identities = 49/181 (27%), Positives = 79/181 (43%), Gaps = 17/181 (9%)

Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
            K+  VGDG  GKT  +  H   +F   YV T+  + +P     +       +WDTAGQE
Sbjct: 16  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75

Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSE 142
            +  LR   Y    C ++ F + S  +Y+N+   W+ +L   C  +PI+L G K D++  
Sbjct: 76  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIK-- 132

Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQDK 202
                       D    ++     RK K  +Y + SAK N   ++ F+   R  +   + 
Sbjct: 133 ------------DRKVKAKSIVFHRK-KNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 179

Query: 203 S 203
            
Sbjct: 180 E 180

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178

 Score =  131 bits (333), Expect = 3e-39
 Identities = 35/188 (18%), Positives = 71/188 (37%), Gaps = 25/188 (13%)

Query: 22  KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
             L++  +GD   GK+ L+       +      T  + Y   + VD +T+ V + + AG 
Sbjct: 6   PELRLGVLGDARSGKSSLIHRFLTGSY-QVLEKTESEQYKKEMLVDGQTHLVLIREEAGA 64

Query: 82  EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPK----VPIILVGT-- 135
            D +          D  +  FS+   +S++ + S+ + +L     +    + + LVGT  
Sbjct: 65  PDAKFSG-----WADAVIFVFSLEDENSFQAV-SRLHGQLSSLRGEGRGGLALALVGTQD 118

Query: 136 KADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRS 195
           +    S               V  ++ + +   +K   Y E  A     +D+VF    + 
Sbjct: 119 RISASSPRV------------VGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQK 166

Query: 196 AVKKQDKS 203
            V  + + 
Sbjct: 167 VVTLRKQQ 174

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218

 Score =  131 bits (331), Expect = 2e-38
 Identities = 42/183 (22%), Positives = 76/183 (41%), Gaps = 17/183 (9%)

Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPT--VFDNYPDTITVDNKTYDVTLWDTAGQ 81
            K+  +GDG VGKT  +    + +F  +Y  T    ++    +          +WDTAGQ
Sbjct: 12  YKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQ 71

Query: 82  EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLR 140
           E    L+ + Y      +L F + S  + +N+ ++W  E +     + PI++   K D++
Sbjct: 72  EKKAVLKDVYYIGASGAILFFDVTSRITCQNL-ARWVKEFQAVVGNEAPIVVCANKIDIK 130

Query: 141 SENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQ 200
                 +++K      +S     ++ +  K  EY E SAK        F+   R    + 
Sbjct: 131 ------NRQK------ISKKLVMEVLKG-KNYEYFEISAKTAHNFGLPFLHLARIFTGRP 177

Query: 201 DKS 203
           D  
Sbjct: 178 DLI 180

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177

 Score =  126 bits (318), Expect = 5e-37
 Identities = 58/186 (31%), Positives = 84/186 (45%), Gaps = 24/186 (12%)

Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV---FDNYPDTITVDNKTYDVTLWDTAG 80
            KV  +GDG VGK+ L+  +  NKF T    T+   F N    + VD     + +WDTAG
Sbjct: 8   FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLN--KDLEVDGHFVTMQIWDTAG 65

Query: 81  QEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-----PKVPIILVGT 135
           QE +  LR   Y  +DC LL FS+  + S++N LS W  E  ++         P +++G 
Sbjct: 66  QERFRSLRTPFYRGSDCCLLTFSVDDSQSFQN-LSNWKKEFIYYADVKEPESFPFVILGN 124

Query: 136 KADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRS 195
           K D+    +            VST + +   R      Y E SAK    +   F  AVR 
Sbjct: 125 KIDI--SERQ-----------VSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRR 171

Query: 196 AVKKQD 201
            +  +D
Sbjct: 172 VLATED 177

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192

 Score =  125 bits (317), Expect = 8e-37
 Identities = 44/186 (23%), Positives = 79/186 (42%), Gaps = 23/186 (12%)

Query: 25  KVTTVGDGMVGKTCLLI--THTENKFPTDYVPTVFDNYPDTITVDNKTYDVTL---WDTA 79
           +V  +G+  VGK+ L        +   +D      D Y  T+ VD ++  + L   W+  
Sbjct: 8   RVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENK 67

Query: 80  GQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELK--HHCPKVPIILVGTKA 137
           G+ ++  L        D +L+ +SI   +S+E   S+   +L+       +PIILVG K+
Sbjct: 68  GENEW--LHDHCMQVGDAYLIVYSITDRASFEKA-SELRIQLRRARQTEDIPIILVGNKS 124

Query: 138 DLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV 197
           DL    +            VS S+G+          ++E SA +   + ++F   VR   
Sbjct: 125 DLVRXRE------------VSVSEGRAXAVVFDXK-FIETSAAVQHNVKELFEGIVRQVR 171

Query: 198 KKQDKS 203
            ++D  
Sbjct: 172 LRRDSK 177

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182

 Score =  125 bits (316), Expect = 1e-36
 Identities = 52/187 (27%), Positives = 82/187 (43%), Gaps = 23/187 (12%)

Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV---FDNYPDTITVD-NKTYDVTLWDTA 79
           LKV  +GD  VGKT L+  +  +K+   Y  T+   F      +TVD +K   + +WDTA
Sbjct: 9   LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLT--KEVTVDGDKVATMQVWDTA 66

Query: 80  GQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-----PKVPIILVG 134
           GQE ++ L    Y   DC +L + + + SS+EN +  W  E   H         P +++G
Sbjct: 67  GQERFQSLGVAFYRGADCCVLVYDVTNASSFEN-IKSWRDEFLVHANVNSPETFPFVILG 125

Query: 135 TKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
            K D     K            VS    +++ + +        SAK    +D  F    R
Sbjct: 126 NKIDAEESKKI-----------VSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIAR 174

Query: 195 SAVKKQD 201
           SA+++  
Sbjct: 175 SALQQNQ 181

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168

 Score =  122 bits (308), Expect = 1e-35
 Identities = 43/177 (24%), Positives = 80/177 (45%), Gaps = 15/177 (8%)

Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
           +K+  VG+G VGK+ ++  + +  F  DY  T+  D     I V+++   + LWDTAGQE
Sbjct: 6   IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 65

Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSE 142
           +++ +    Y      +L FS     S+E I S W  ++      +P  LV  K DL  +
Sbjct: 66  EFDAITKAYYRGAQACVLVFSTTDRESFEAI-SSWREKVVAEVGDIPTALVQNKIDLLDD 124

Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKK 199
           +             +   + + + +++K   +   S K +  + +VF       ++K
Sbjct: 125 SC------------IKNEEAEGLAKRLK-LRFYRTSVKEDLNVSEVFKYLAEKHLQK 168

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181

 Score =  119 bits (300), Expect = 2e-34
 Identities = 45/181 (24%), Positives = 80/181 (44%), Gaps = 15/181 (8%)

Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
            K+  +GD  VGK+ LL+   +N F   Y+ T+  D    T+ ++ +   + +WDTAGQE
Sbjct: 10  FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQE 69

Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSE 142
            +  +    Y  T   ++ + + S  S+ N+  +W  E+  +C  V  ILVG K D    
Sbjct: 70  RFRTITSTYYRGTHGVIVVYDVTSAESFVNV-KRWLHEINQNCDDVCRILVGNKNDDPER 128

Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQDK 202
                         V T    K   ++   +  E SAK N  ++++F       ++ +  
Sbjct: 129 KV------------VETEDAYKFAGQMG-IQLFETSAKENVNVEEMFNCITELVLRAKKD 175

Query: 203 S 203
           +
Sbjct: 176 N 176

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201

 Score =  119 bits (301), Expect = 3e-34
 Identities = 39/181 (21%), Positives = 77/181 (42%), Gaps = 15/181 (8%)

Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQED 83
           K+  VGD  VGKTC++       F      T+  D    T+ +  K   + +WDTAGQE 
Sbjct: 31  KLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQER 90

Query: 84  YERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSE 142
           +  +    Y + +  +L + I   SS+ ++   W  +++ +    +  +L+G K+DL   
Sbjct: 91  FRTITQSYYRSANGAILAYDITKRSSFLSV-PHWIEDVRKYAGSNIVQLLIGNKSDLSEL 149

Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQDK 202
            +            VS ++ + +         +E SAK +  +++ F+      + +   
Sbjct: 150 RE------------VSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMRHGG 197

Query: 203 S 203
            
Sbjct: 198 P 198

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207

 Score =  119 bits (301), Expect = 4e-34
 Identities = 50/188 (26%), Positives = 82/188 (43%), Gaps = 24/188 (12%)

Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV---FDNYPDTITVDNKTYDVTLWDTAG 80
           LKV  +GD  VGKT L+  +   KF   Y  T+   F      + VD++   + +WDTAG
Sbjct: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLT--KEVMVDDRLVTMQIWDTAG 66

Query: 81  QEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-----PKVPIILVGT 135
           QE ++ L    Y   DC +L F + + ++++  L  W  E             P +++G 
Sbjct: 67  QERFQSLGVAFYRGADCCVLVFDVTAPNTFKT-LDSWRDEFLIQASPRDPENFPFVVLGN 125

Query: 136 KADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRS 195
           K DL +               V+T + +          Y E SAK    ++Q F    R+
Sbjct: 126 KIDLENRQ-------------VATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARN 172

Query: 196 AVKKQDKS 203
           A+K++ + 
Sbjct: 173 ALKQETEV 180

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199

 Score =  118 bits (299), Expect = 7e-34
 Identities = 51/179 (28%), Positives = 80/179 (44%), Gaps = 14/179 (7%)

Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTV---FDNYPDTITVDNKTYDVTLWDTAGQ 81
           K+   GD  VGK+  L+   +N+F  +   T+   F     T+ VD +   + LWDTAGQ
Sbjct: 30  KIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQM--KTLIVDGERTVLQLWDTAGQ 87

Query: 82  EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLR 140
           E +  +    +   D  LL + +    S+ NI  +W   ++      VPI+LVG KAD+R
Sbjct: 88  ERFRSIAKSYFRKADGVLLLYDVTCEKSFLNI-REWVDMIEDAAHETVPIMLVGNKADIR 146

Query: 141 SENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKK 199
               T  +K       V    G+K+      A + E SAK    + +  +   R   K+
Sbjct: 147 DTAATEGQKC------VPGHFGEKLAMTYG-ALFCETSAKDGSNIVEAVLHLAREVKKR 198

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192

 Score =  117 bits (295), Expect = 2e-33
 Identities = 46/178 (25%), Positives = 83/178 (46%), Gaps = 15/178 (8%)

Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
           L+V  +G   VGKT L+   T++ F      TV  D    T+ +  K   + +WDTAGQE
Sbjct: 27  LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE 86

Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRS 141
            +  +    Y +    +L + I    +++++  KW   +  +      ++LVG K D  +
Sbjct: 87  RFNSITSAYYRSAKGIILVYDITKKETFDDL-PKWMKMIDKYASEDAELLLVGNKLDCET 145

Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKK 199
           + +            ++  QG+K  ++I    + E SAK N  +D++F+  V   +KK
Sbjct: 146 DRE------------ITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKK 191

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189

 Score =  115 bits (289), Expect = 1e-32
 Identities = 51/203 (25%), Positives = 84/203 (41%), Gaps = 16/203 (7%)

Query: 2   LSGAQTTKGGDKDVKSKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNY 60
           +  +         +  +      K+  +G+  VGKT  L  + ++ F   +V TV  D  
Sbjct: 1   MGSSHHHHHHSSGLVPRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFK 60

Query: 61  PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPE 120
             T+   +K   + +WDTAGQE Y  +    Y     FLL + I +  S+  +   W  +
Sbjct: 61  VKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAV-QDWATQ 119

Query: 121 LKHH-CPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSA 179
           +K +      +ILVG K DL  E              V    G+++   +   E+ E SA
Sbjct: 120 IKTYSWDNAQVILVGNKCDLEDERV------------VPAEDGRRLADDLG-FEFFEASA 166

Query: 180 KLNEGLDQVFIAAVRSAVKKQDK 202
           K N  + QVF   V    +K ++
Sbjct: 167 KENINVKQVFERLVDVICEKMNE 189

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201

 Score =  114 bits (288), Expect = 2e-32
 Identities = 44/181 (24%), Positives = 84/181 (46%), Gaps = 16/181 (8%)

Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQED 83
           K+  +G+  VGKTCL+   T+  FP     T+  D    T+ ++ +   + +WDTAGQE 
Sbjct: 28  KIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQER 87

Query: 84  YERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSE 142
           +  +    Y + +  +L + I    S+  +  +W  E++ +   KV  +LVG K DL   
Sbjct: 88  FRSITQSYYRSANALILTYDITCEESFRCL-PEWLREIEQYASNKVITVLVGNKIDLAER 146

Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQDK 202
            +            VS  + ++         YLE SAK ++ ++++F+      + +  +
Sbjct: 147 RE------------VSQQRAEEFSEAQD-MYYLETSAKESDNVEKLFLDLACRLISEARQ 193

Query: 203 S 203
           +
Sbjct: 194 N 194

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195

 Score =  114 bits (287), Expect = 3e-32
 Identities = 55/202 (27%), Positives = 92/202 (45%), Gaps = 23/202 (11%)

Query: 4   GAQTTKGGDKDVKSKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPD 62
           G+  + G D+DV +      LK+  +G+  VGK+ LL+  T++ F  +   T+  D    
Sbjct: 1   GSSGSSGMDEDVLT-----TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVK 55

Query: 63  TITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELK 122
           TI+VD     + +WDTAGQE +  L P  Y      +L + +    ++  +   W  EL+
Sbjct: 56  TISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKL-DNWLNELE 114

Query: 123 HHCPK--VPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAK 180
            +C +  +  +LVG K D   EN+            V  ++G K  RK     ++E SAK
Sbjct: 115 TYCTRNDIVNMLVGNKIDK--ENRE-----------VDRNEGLKFARKHS-MLFIEASAK 160

Query: 181 LNEGLDQVFIAAVRSAVKKQDK 202
             +G+   F   V   ++    
Sbjct: 161 TCDGVQCAFEELVEKIIQTPGL 182

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191

 Score =  114 bits (287), Expect = 4e-32
 Identities = 44/181 (24%), Positives = 81/181 (44%), Gaps = 16/181 (8%)

Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
            K   +GD  VGK+CLL+  T+ +F   +  T+  +     + +D K   + +WDTAGQE
Sbjct: 22  FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE 81

Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRS 141
            +  +    Y      LL + I    ++ ++ + W  + + H    + I+L+G K+DL S
Sbjct: 82  SFRSITRSYYRGAAGALLVYDITRRETFNHL-TSWLEDARQHSSSNMVIMLIGNKSDLES 140

Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQD 201
                          V   +G+   R+     ++E SAK    +++ FI   +   +K  
Sbjct: 141 RRD------------VKREEGEAFAREHGLI-FMETSAKTACNVEEAFINTAKEIYRKIQ 187

Query: 202 K 202
           +
Sbjct: 188 Q 188

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191

 Score =  113 bits (286), Expect = 4e-32
 Identities = 51/205 (24%), Positives = 84/205 (40%), Gaps = 16/205 (7%)

Query: 1   MLSGAQTTKGGDKDVKSKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDN 59
           M      + G +      +     K+  +G+  VGKT  L  + ++ F   +V TV  D 
Sbjct: 1   MHHHHHHSSGRENLYFQGNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDF 60

Query: 60  YPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYP 119
              T+    K   + +WDTAGQE Y  +    Y     F+L + I +  S+  +   W  
Sbjct: 61  KVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAV-QDWAT 119

Query: 120 ELKHH-CPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECS 178
           ++K +      +ILVG K D+  E              V T +G+ +  ++   ++ E S
Sbjct: 120 QIKTYSWDNAQVILVGNKCDMEEERV------------VPTEKGQLLAEQLG-FDFFEAS 166

Query: 179 AKLNEGLDQVFIAAVRSAVKKQDKS 203
           AK N  + Q F   V +   K   S
Sbjct: 167 AKENISVRQAFERLVDAICDKMSDS 191

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179

 Score =  113 bits (285), Expect = 4e-32
 Identities = 50/173 (28%), Positives = 79/173 (45%), Gaps = 16/173 (9%)

Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
            K   +GD  VGK+CLL   TE KF  D   T+  +     I V  +   + +WDTAGQE
Sbjct: 16  FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE 75

Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRS 141
            +  +    Y      L+ + I   S+Y ++ S W  + ++   P   IIL+G KADL +
Sbjct: 76  RFRAVTRSYYRGAAGALMVYDITRRSTYNHL-SSWLTDARNLTNPNTVIILIGNKADLEA 134

Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
           +              V+  + K+   +     +LE SAK  E ++  F+ A +
Sbjct: 135 QRD------------VTYEEAKQFAEENGLL-FLEASAKTGENVEDAFLEAAK 174

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183

 Score =  113 bits (285), Expect = 6e-32
 Identities = 50/184 (27%), Positives = 86/184 (46%), Gaps = 20/184 (10%)

Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV---FDNYPDTITVDNKTYDVTLWDTAG 80
            K+  +GD  VGKTC+L   +E+ F + ++ T+   F     TI +D K   + +WDTAG
Sbjct: 9   FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKI--RTIELDGKRIKLQIWDTAG 66

Query: 81  QEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADL 139
           QE +  +    Y      +L + I +  S++NI   W   ++ H    V  +++G K D+
Sbjct: 67  QERFRTITTAYYRGAMGIMLVYDITNEKSFDNI-RNWIRNIEEHASADVEKMILGNKCDV 125

Query: 140 RSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKK 199
             + +            VS  +G+K+       +++E SAK N  ++  F    R    K
Sbjct: 126 NDKRQ------------VSKERGEKLALDYG-IKFMETSAKANINVENAFFTLARDIKAK 172

Query: 200 QDKS 203
            DK+
Sbjct: 173 MDKN 176

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200

 Score =  113 bits (286), Expect = 6e-32
 Identities = 48/182 (26%), Positives = 80/182 (43%), Gaps = 16/182 (8%)

Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
            K   +G    GK+CLL    ENKF  D   T+  +     + V  KT  + +WDTAGQE
Sbjct: 26  FKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQE 85

Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRS 141
            +  +    Y      LL + I S  +Y ++ + W  + +    P + +IL G K DL  
Sbjct: 86  RFRSVTRSYYRGAAGALLVYDITSRETYNSL-AAWLTDARTLASPNIVVILCGNKKDLDP 144

Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQD 201
           E +            V+  +  +  ++ +   +LE SA   E +++ F+   R+ + K D
Sbjct: 145 ERE------------VTFLEASRFAQENELM-FLETSALTGENVEEAFLKCARTILNKID 191

Query: 202 KS 203
             
Sbjct: 192 SG 193

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170

 Score =  112 bits (283), Expect = 7e-32
 Identities = 46/172 (26%), Positives = 86/172 (50%), Gaps = 16/172 (9%)

Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQED 83
           KV  +G+G VGKT L++ + ENKF   ++ T+        + +  K  ++ +WDTAGQE 
Sbjct: 8   KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQER 67

Query: 84  YERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSE 142
           +  L P+ Y +++  +L + I    S++ +   W  EL+     ++ + +VG K DL  E
Sbjct: 68  FHALGPIYYRDSNGAILVYDITDEDSFQKV-KNWVKELRKMLGNEICLCIVGNKIDLEKE 126

Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
                         VS  + +     +  A++   SAK N+G++++F+   +
Sbjct: 127 RH------------VSIQEAESYAESVG-AKHYHTSAKQNKGIEELFLDLCK 165

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186

 Score =  113 bits (284), Expect = 9e-32
 Identities = 45/181 (24%), Positives = 77/181 (42%), Gaps = 16/181 (8%)

Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
            K   +G+   GK+CLL    E KF  D   T+  +     I V  K   + +WDTAGQE
Sbjct: 11  FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 70

Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRS 141
            +  +    Y      LL + I S  +Y  + + W  + +      + IIL G K DL +
Sbjct: 71  RFRSVTRSYYRGAAGALLVYDITSRETYNAL-TNWLTDARMLASQNIVIILCGNKKDLDA 129

Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQD 201
           + +            V+  +  +  ++ +   +LE SA   E +++ F+   R  + K +
Sbjct: 130 DRE------------VTFLEASRFAQENELM-FLETSALTGENVEEAFVQCARKILNKIE 176

Query: 202 K 202
            
Sbjct: 177 S 177

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199

 Score =  113 bits (284), Expect = 9e-32
 Identities = 47/197 (23%), Positives = 84/197 (42%), Gaps = 16/197 (8%)

Query: 5   AQTTKGGDKDVKSKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDT 63
               +G      +       K+  +GD  VGK+CLL+   ++ +   Y+ T+  D    T
Sbjct: 15  NLYFQGRPMSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRT 74

Query: 64  ITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKH 123
           I +D KT  + +WDTAGQE +  +    Y      ++ + +    S+ N+  +W  E+  
Sbjct: 75  IELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDR 133

Query: 124 HCPK-VPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLN 182
           +  + V  +LVG K DL ++              V  +  K+    +    +LE SAK  
Sbjct: 134 YASENVNKLLVGNKCDLTTKKV------------VDYTTAKEFADSLG-IPFLETSAKNA 180

Query: 183 EGLDQVFIAAVRSAVKK 199
             ++Q F+       K+
Sbjct: 181 TNVEQSFMTMAAEIKKR 197

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170

 Score =  112 bits (282), Expect = 1e-31
 Identities = 45/184 (24%), Positives = 92/184 (50%), Gaps = 21/184 (11%)

Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV---FDNYPDTITVDNKTYDVTLWDTAG 80
           +K+  +GD  VGK+CLL+   E+KF   ++ T+   F     T+ ++ K   + +WDTAG
Sbjct: 4   MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKI--KTVDINGKKVKLQIWDTAG 61

Query: 81  QEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADL 139
           QE +  +    Y      +L + I    ++ NI  +W+  +  H   +  ++LVG K+D+
Sbjct: 62  QERFRTITTAYYRGAMGIILVYDITDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSDM 120

Query: 140 RSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKK 199
                  + +       V+  QG+ + +++    ++E SAK ++ ++++F    +   +K
Sbjct: 121 -------ETRV------VTADQGEALAKELG-IPFIESSAKNDDNVNEIFFTLAKLIQEK 166

Query: 200 QDKS 203
            D +
Sbjct: 167 IDSN 170

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199

 Score =  112 bits (283), Expect = 1e-31
 Identities = 53/181 (29%), Positives = 82/181 (45%), Gaps = 16/181 (8%)

Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQED 83
           KV  +GD  VGK+ LL   T N+F  +   T+  +    +I VD KT    +WDTAGQE 
Sbjct: 7   KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 66

Query: 84  YERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHH-CPKVPIILVGTKADLRSE 142
           Y R+    Y      LL + I    +YEN+  +W  EL+ H    + I+LVG K+DLR  
Sbjct: 67  YRRITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLRHL 125

Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQDK 202
                         V T + +    K   + ++E SA  +  +++ F   +    +   +
Sbjct: 126 RA------------VPTDEARAFAEKNNLS-FIETSALDSTNVEEAFKNILTEIYRIVSQ 172

Query: 203 S 203
            
Sbjct: 173 K 173

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193

 Score =  112 bits (282), Expect = 1e-31
 Identities = 46/180 (25%), Positives = 72/180 (40%), Gaps = 16/180 (8%)

Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQED 83
           KV  +G+  VGKT LL   T N+F  D   T+  +    T+ +        +WDTAG E 
Sbjct: 27  KVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLER 86

Query: 84  YERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSE 142
           Y  +    Y      LL F +    +Y  +  +W  EL  H    + ++LVG K+DL   
Sbjct: 87  YRAITSAYYRGAVGALLVFDLTKHQTYAVV-ERWLKELYDHAEATIVVMLVGNKSDLSQA 145

Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQDK 202
            +            V T + +          +LE SA  +  ++  F   ++    K  K
Sbjct: 146 RE------------VPTEEARMFAENNG-LLFLETSALDSTNVELAFETVLKEIFAKVSK 192

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203

 Score =  112 bits (282), Expect = 2e-31
 Identities = 49/182 (26%), Positives = 82/182 (45%), Gaps = 16/182 (8%)

Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
            K+  +G+  VGKT  L  + ++ F   +V TV  D    TI  ++K   + +WDTAG E
Sbjct: 9   FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLE 68

Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHH-CPKVPIILVGTKADLRS 141
            Y  +    Y     F+L + I +  S+  +   W  ++K +      ++LVG K D+  
Sbjct: 69  RYRTITTAYYRGAMGFILMYDITNEESFNAV-QDWSTQIKTYSWDNAQVLLVGNKCDMED 127

Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQD 201
           E              VS+ +G+++   +   E+ E SAK N  + Q F   V    +K  
Sbjct: 128 ERV------------VSSERGRQLADHLG-FEFFEASAKDNINVKQTFERLVDVICEKMS 174

Query: 202 KS 203
           +S
Sbjct: 175 ES 176

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191

 Score =  111 bits (281), Expect = 2e-31
 Identities = 51/173 (29%), Positives = 77/173 (44%), Gaps = 16/173 (9%)

Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
            KV  +GD  VGK+ LL   T N+F  +   T+  +    +I VD KT    +WDTAG E
Sbjct: 30  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 89

Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRS 141
            Y  +    Y      LL + I    +YEN+  +W  EL+ H    + I+LVG K+DLR 
Sbjct: 90  RYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLRH 148

Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
                          V T + +    K   + ++E SA  +  ++  F   + 
Sbjct: 149 LRA------------VPTDEARAFAEKNGLS-FIETSALDSTNVEAAFQTILT 188

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196

 Score =  111 bits (281), Expect = 2e-31
 Identities = 46/181 (25%), Positives = 81/181 (44%), Gaps = 16/181 (8%)

Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQED 83
           K+  +GD  VGK+CLL+   ++ +   Y+ T+  D    TI +D KT  + +WDTAGQE 
Sbjct: 18  KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 77

Query: 84  YERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPK-VPIILVGTKADLRSE 142
           +  +    Y      ++ + +    S+ N+  +W  E+  +  + V  +LVG K DL ++
Sbjct: 78  FRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTTK 136

Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQDK 202
                         V  +  K+    +    +LE SAK    ++Q F+       K+   
Sbjct: 137 KV------------VDYTTAKEFADSLG-IPFLETSAKNATNVEQSFMTMAAEIKKRMGP 183

Query: 203 S 203
            
Sbjct: 184 G 184

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179

 Score =  111 bits (280), Expect = 2e-31
 Identities = 47/174 (27%), Positives = 85/174 (48%), Gaps = 20/174 (11%)

Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTV---FDNYPDTITVDNKTYDVTLWDTAGQ 81
           K+  +G+  VGKT L+     + F   Y  T+   F +   T+ ++++T  + LWDTAGQ
Sbjct: 16  KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLS--KTMYLEDRTVRLQLWDTAGQ 73

Query: 82  EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLR 140
           E +  L P    ++   ++ + I +T+S+    SKW  +++      V I+LVG K DL 
Sbjct: 74  ERFRSLIPSYIRDSTVAVVVYDITNTNSFHQT-SKWIDDVRTERGSDVIIMLVGNKTDLS 132

Query: 141 SENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
            + +            VST +G++  +++    ++E SAK    + Q+F     
Sbjct: 133 DKRQ------------VSTEEGERKAKELN-VMFIETSAKAGYNVKQLFRRVAA 173

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170

 Score =  111 bits (279), Expect = 3e-31
 Identities = 43/172 (25%), Positives = 76/172 (44%), Gaps = 16/172 (9%)

Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQED 83
           K+  +G+  VGK+ L++   + +F      T+       T+ +D+ T    +WDTAGQE 
Sbjct: 8   KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 67

Query: 84  YERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELK-HHCPKVPIILVGTKADLRSE 142
           Y  L PM Y      ++ + I +  S+      W  EL+    P + I L G KADL ++
Sbjct: 68  YHSLAPMYYRGAQAAIVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGNKADLANK 126

Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
                         V   + +          ++E SAK +  ++++F+A  +
Sbjct: 127 RA------------VDFQEAQSYADDNSLL-FMETSAKTSMNVNEIFMAIAK 165

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score =  111 bits (279), Expect = 3e-31
 Identities = 35/191 (18%), Positives = 72/191 (37%), Gaps = 23/191 (12%)

Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPT--DYVPTV---FDNYPDTITVDNKTY-DVTL-- 75
           +K+  VG+   GKT LL    + K         TV     ++   I + +K   D+ L  
Sbjct: 3   MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDW--PIQIRDKRKRDLVLNV 60

Query: 76  WDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGT 135
           WD AG+E++    P        +L  + +    +  + +  W   +K      P+ILVGT
Sbjct: 61  WDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGT 120

Query: 136 KADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIK----AAEYLECSAKLNEGLDQVFIA 191
             D+  E          +     +   K++  K         +   + + ++ L ++   
Sbjct: 121 HLDVSDEK---------QRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKT 171

Query: 192 AVRSAVKKQDK 202
            +  ++  + +
Sbjct: 172 IINESLNFKIR 182

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170

 Score =  110 bits (277), Expect = 5e-31
 Identities = 46/175 (26%), Positives = 76/175 (43%), Gaps = 20/175 (11%)

Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV---FDNYPDTITVDNKTYDVTLWDTAG 80
           LKV  +GD  VGK+ ++    E+ F  +  PT+   F     T+   N+ +   +WDTAG
Sbjct: 7   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMT--KTVQYQNELHKFLIWDTAG 64

Query: 81  QEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADL 139
            E +  L PM Y  +   ++ + I    ++  +   W  EL+ H  P + + + G K DL
Sbjct: 65  LERFRALAPMYYRGSAAAIIVYDITKEETFSTL-KNWVRELRQHGPPSIVVAIAGNKCDL 123

Query: 140 RSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
               +            V     K     I A  ++E SAK    ++++FI   R
Sbjct: 124 TDVRE------------VMERDAKDYADSIHAI-FVETSAKNAININELFIEISR 165

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192

 Score =  111 bits (279), Expect = 5e-31
 Identities = 51/198 (25%), Positives = 81/198 (40%), Gaps = 20/198 (10%)

Query: 1   MLSGAQTTKGGDKDVKSKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV---F 57
           M S           V   S  + LKV  +GD  VGK+ ++    ++ F  +  PT+   F
Sbjct: 1   MGSSHHHHHHSSGLVPRGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASF 60

Query: 58  DNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKW 117
                T+   N+ +   +WDTAGQE +  L PM Y  +   ++ + I    S+  +  KW
Sbjct: 61  MT--KTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTL-KKW 117

Query: 118 YPELK-HHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLE 176
             ELK H    + + + G K DL    +            V     K+    I A   +E
Sbjct: 118 VKELKEHGPENIVMAIAGNKCDLSDIRE------------VPLKDAKEYAESIGAI-VVE 164

Query: 177 CSAKLNEGLDQVFIAAVR 194
            SAK    ++++F    R
Sbjct: 165 TSAKNAINIEELFQGISR 182

>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211

 Score =  111 bits (280), Expect = 5e-31
 Identities = 43/183 (23%), Positives = 85/183 (46%), Gaps = 20/183 (10%)

Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTV---FDNYPDTITVDNKTYDVTLWDTAGQ 81
           K+  +G+  VGKT L+     + F   Y  T+   F +   T+ ++++T  + LWDTAG 
Sbjct: 18  KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLS--KTMYLEDRTVRLQLWDTAGL 75

Query: 82  EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLR 140
           E +  L P    ++   ++ + I + +S++   +KW  +++      V I+LVG K DL 
Sbjct: 76  ERFRSLIPSYIRDSTVAVVVYDITNVNSFQQT-TKWIDDVRTERGSDVIIMLVGNKTDLA 134

Query: 141 SENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQ 200
            + +            VS  +G++  +++    ++E SAK    + Q+F     +    +
Sbjct: 135 DKRQ------------VSIEEGERKAKELN-VMFIETSAKAGYNVKQLFRRVAAALPGME 181

Query: 201 DKS 203
              
Sbjct: 182 STQ 184

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181

 Score =  109 bits (276), Expect = 9e-31
 Identities = 46/181 (25%), Positives = 81/181 (44%), Gaps = 16/181 (8%)

Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQED 83
           K+  +GD   GK+ L++   +++F      T+    +  T+ V++ T    +WDTAGQE 
Sbjct: 14  KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 73

Query: 84  YERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSE 142
           Y  L PM Y      ++ F + + +S+E    KW  EL+    P + + L G K+DL   
Sbjct: 74  YHSLAPMYYRGAAAAIIVFDVTNQASFERA-KKWVQELQAQGNPNMVMALAGNKSDLL-- 130

Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQDK 202
               D +K      V+    +   ++     ++E SAK    + ++F    R   + Q  
Sbjct: 131 ----DARK------VTAEDAQTYAQENGLF-FMETSAKTATNVKEIFYEIARRLPRVQPT 179

Query: 203 S 203
            
Sbjct: 180 E 180

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180

 Score =  109 bits (274), Expect = 2e-30
 Identities = 51/184 (27%), Positives = 83/184 (45%), Gaps = 21/184 (11%)

Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTD-YVPTV---FDNYPDTITVDNKTYDVTLWDTAG 80
           KV  VGD  VGKTCLL+   +  F    ++ TV   F N    + VD     + +WDTAG
Sbjct: 12  KVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRN--KVLDVDGVKVKLQMWDTAG 69

Query: 81  QEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADL 139
           QE +  +    Y +    LL + + + +S++NI   W  E+  +    V ++L+G K D 
Sbjct: 70  QERFRSVTHAYYRDAHALLLLYDVTNKASFDNI-QAWLTEIHEYAQHDVALMLLGNKVDS 128

Query: 140 RSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKK 199
             E              V    G+K+ ++     ++E SAK    +D  F A  +   ++
Sbjct: 129 AHERV------------VKREDGEKLAKEYG-LPFMETSAKTGLNVDLAFTAIAKELKRR 175

Query: 200 QDKS 203
             K+
Sbjct: 176 SMKA 179

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206

 Score =  110 bits (276), Expect = 2e-30
 Identities = 43/184 (23%), Positives = 80/184 (43%), Gaps = 20/184 (10%)

Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV---FDNYPDTITVDNKTYDVTLWDTAG 80
            K+  +G+  VGK+CLL+  +++ +  DY+ T+   F     T+ +D KT  + +WDTAG
Sbjct: 9   FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKI--KTVELDGKTVKLQIWDTAG 66

Query: 81  QEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPK-VPIILVGTKADL 139
           QE +  +    Y  +   ++ + +    S+  +   W  E+  +    V  +LVG K DL
Sbjct: 67  QERFRTITSSYYRGSHGIIIVYDVTDQESFNGV-KMWLQEIDRYATSTVLKLLVGNKCDL 125

Query: 140 RSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKK 199
           + +              V     K+     K   +LE SA  +  ++  F+   R   + 
Sbjct: 126 KDKRV------------VEYDVAKEFADANK-MPFLETSALDSTNVEDAFLTMARQIKES 172

Query: 200 QDKS 203
             + 
Sbjct: 173 MSQQ 176

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217

 Score =  109 bits (275), Expect = 4e-30
 Identities = 49/193 (25%), Positives = 87/193 (45%), Gaps = 27/193 (13%)

Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVT-------- 74
           +K+  +GD  VGKT  L  +T+NKF   ++ TV  D     +  + +  + +        
Sbjct: 26  IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 85

Query: 75  --LWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHH--CPKVPI 130
             LWDTAGQE +  L    + +   FLL F + S  S+ N+   W  +L+ +  C    I
Sbjct: 86  LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNV-RNWMSQLQANAYCENPDI 144

Query: 131 ILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFI 190
           +L+G KADL  + +            V+  Q +++  K     Y E SA   + +++   
Sbjct: 145 VLIGNKADLPDQRE------------VNERQARELADKYG-IPYFETSAATGQNVEKAVE 191

Query: 191 AAVRSAVKKQDKS 203
             +   +K+ ++ 
Sbjct: 192 TLLDLIMKRMEQC 204

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213

 Score =  109 bits (274), Expect = 5e-30
 Identities = 45/184 (24%), Positives = 92/184 (50%), Gaps = 21/184 (11%)

Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV---FDNYPDTITVDNKTYDVTLWDTAG 80
           +K+  +GD  VGK+CLL+   E+KF   ++ T+   F     T+ ++ K   + LWDTAG
Sbjct: 21  MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKI--KTVDINGKKVKLQLWDTAG 78

Query: 81  QEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADL 139
           QE +  +    Y      +L + +    ++ NI  +W+  +  H   +  ++LVG K+D+
Sbjct: 79  QERFRTITTAYYRGAMGIILVYDVTDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSDM 137

Query: 140 RSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKK 199
                  + +       V+  QG+ + +++    ++E SAK ++ ++++F    +   +K
Sbjct: 138 -------ETRV------VTADQGEALAKELG-IPFIESSAKNDDNVNEIFFTLAKLIQEK 183

Query: 200 QDKS 203
            D +
Sbjct: 184 IDSN 187

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208

 Score =  108 bits (273), Expect = 5e-30
 Identities = 41/189 (21%), Positives = 71/189 (37%), Gaps = 23/189 (12%)

Query: 24  LKVTTVGDGMVGKTCLLI--THTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLW--DT 78
            KV  VG+  VGK+ L+   T   +KF  DY  T   +     +T+ + T  V L+  DT
Sbjct: 21  CKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDT 80

Query: 79  AGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELK----HHCPKVPIILVG 134
           AG + Y+      +      +L F + S  S+E+    W+  LK         +  +LV 
Sbjct: 81  AGSDLYKEQISQYWNGVYYAILVFDVSSMESFESC-KAWFELLKSARPDRERPLRAVLVA 139

Query: 135 TKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKL-NEGLDQVFIAAV 193
            K DL  +              V     +         ++ + SA    +  D  F++  
Sbjct: 140 NKTDLPPQRHQ-----------VRLDMAQDWATTNT-LDFFDVSANPPGKDADAPFLSIA 187

Query: 194 RSAVKKQDK 202
            +  +  + 
Sbjct: 188 TTFYRNYED 196

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195

 Score =  108 bits (272), Expect = 6e-30
 Identities = 47/192 (24%), Positives = 78/192 (40%), Gaps = 27/192 (14%)

Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-----------FDNYPDTITVDNKTYDV 73
           K   +GD  VGKT +L  +T+ KF + ++ TV             N PD      +   +
Sbjct: 13  KFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHL 72

Query: 74  TLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHH--CPKVPII 131
            LWDTAG E +  L    + +   FLL F + +  S+ N+   W  +L+ H       I+
Sbjct: 73  QLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNV-RNWISQLQMHAYSENPDIV 131

Query: 132 LVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIA 191
           L G K+DL  +              V   + +++  K     Y E SA     +      
Sbjct: 132 LCGNKSDLEDQRA------------VKEEEARELAEKYG-IPYFETSAANGTNISHAIEM 178

Query: 192 AVRSAVKKQDKS 203
            +   +K+ ++S
Sbjct: 179 LLDLIMKRMERS 190

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178

 Score =  107 bits (270), Expect = 9e-30
 Identities = 41/186 (22%), Positives = 66/186 (35%), Gaps = 22/186 (11%)

Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTL--WDTAG 80
           LK+  +GDG  GKT L     +  F   Y  T+  D +   IT+     +VTL  WD  G
Sbjct: 7   LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNL-NVTLQIWDIGG 65

Query: 81  QEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELK----HHCPKVPIILVGTK 136
           Q    ++           LL + I +  S+EN+   WY  +K        +  + LVG K
Sbjct: 66  QTIGGKMLDKYIYGAQGVLLVYDITNYQSFENL-EDWYTVVKKVSEESETQPLVALVGNK 124

Query: 137 ADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSA 196
            DL                 +   +  +  ++         SAK  + +   F       
Sbjct: 125 IDLEHMRT------------IKPEKHLRFCQE-NGFSSHFVSAKTGDSVFLCFQKVAAEI 171

Query: 197 VKKQDK 202
           +  +  
Sbjct: 172 LGIKLN 177

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223

 Score =  108 bits (272), Expect = 1e-29
 Identities = 51/180 (28%), Positives = 83/180 (46%), Gaps = 16/180 (8%)

Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQED 83
           K+  +GD  VGK+ LL   T+N+F  D   T+  +    T+ ++ K     +WDTAGQE 
Sbjct: 15  KIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQER 74

Query: 84  YERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSE 142
           Y  +    Y      L+ + I  +SSYEN  + W  EL+ +    V + L+G K+DL   
Sbjct: 75  YRAITSAYYRGAVGALIVYDISKSSSYENC-NHWLSELRENADDNVAVGLIGNKSDLAHL 133

Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQDK 202
                         V T + K   ++ +   + E SA  +E +D+ F   + +  +K  K
Sbjct: 134 RA------------VPTEESKTFAQENQLL-FTETSALNSENVDKAFEELINTIYQKVSK 180

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189

 Score =  104 bits (262), Expect = 1e-28
 Identities = 49/184 (26%), Positives = 77/184 (41%), Gaps = 22/184 (11%)

Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
            K+  +GD  VGKTCL       +FP     T+  D     + +D +   + LWDTAGQE
Sbjct: 21  FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 80

Query: 83  DYER-LRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC--PKVPIILVGTKADL 139
            + + +    Y N    +  + + + +S+ ++   W  E K H     +P ILVG K DL
Sbjct: 81  RFRKSMVQHYYRNVHAVVFVYDMTNMASFHSL-PAWIEECKQHLLANDIPRILVGNKCDL 139

Query: 140 RSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAK---LNEGLDQVFIAAVRSA 196
           RS  +            V T   +K           E SAK    N+ ++ +F+      
Sbjct: 140 RSAIQ------------VPTDLAQKFADTHS-MPLFETSAKNPNDNDHVEAIFMTLAH-K 185

Query: 197 VKKQ 200
           +K  
Sbjct: 186 LKSH 189

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score =  108 bits (271), Expect = 7e-28
 Identities = 32/186 (17%), Positives = 57/186 (30%), Gaps = 26/186 (13%)

Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPT---------VFDNYPDTITVDNKTYDVT 74
           +KV  +GDGM GKT LL       F      T           +        + K     
Sbjct: 42  IKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFH 101

Query: 75  LWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVG 134
            WD  GQE            +  ++L        +  N    W   ++ +  K P+I+V 
Sbjct: 102 FWDFGGQEIMHASHQFFMTRSSVYMLLLDS---RTDSN-KHYWLRHIEKYGGKSPVIVVM 157

Query: 135 TKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
            K D                  +   +  +    I+   +   S K  +G++ +  +   
Sbjct: 158 NKIDENPSYN------------IEQKKINERFPAIE-NRFHRISCKNGDGVESIAKSLKS 204

Query: 195 SAVKKQ 200
           + +   
Sbjct: 205 AVLHPD 210

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170

 Score = 97.2 bits (242), Expect = 8e-26
 Identities = 46/174 (26%), Positives = 76/174 (43%), Gaps = 17/174 (9%)

Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTV---FDNYPDTITVDNKTYDVTLWDTAGQ 81
           K+  +G+  VGK+ +++    N F  +  PT+   F      +T++  T    +WDTAGQ
Sbjct: 5   KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLT--QRVTINEHTVKFEIWDTAGQ 62

Query: 82  EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLR 140
           E +  L P  Y N    L+ + +    S+      W  EL       + I LVG K D  
Sbjct: 63  ERFASLAPXYYRNAQAALVVYDVTKPQSFIKA-RHWVKELHEQASKDIIIALVGNKIDXL 121

Query: 141 SENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
            E     ++K      V+  +G+K+  +     + E SAK  E ++ VF+    
Sbjct: 122 QEG---GERK------VAREEGEKLAEEKGLL-FFETSAKTGENVNDVFLGIGE 165

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208

 Score = 94.5 bits (235), Expect = 2e-24
 Identities = 40/216 (18%), Positives = 75/216 (34%), Gaps = 58/216 (26%)

Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV---FDNYPDTITVDNKTYDVT------ 74
            K   +G+  VGK+ +++  T++ F  +   T+   F  Y   + +++            
Sbjct: 8   YKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTY--VVNLNDINIKNNSNNEKN 65

Query: 75  -------------------------------LWDTAGQEDYERLRPMSYPNTDCFLLCFS 103
                                          +WDTAGQE Y  + P+ Y    C ++ F 
Sbjct: 66  NNINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFD 125

Query: 104 IGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGK 163
           I ++++ +     W  +LK       IILV  K D        +K +      V   + +
Sbjct: 126 ISNSNTLDRA-KTWVNQLKIS-SNYIIILVANKIDK-------NKFQ------VDILEVQ 170

Query: 164 KMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKK 199
           K  +      +++ SAK    +  +F        K 
Sbjct: 171 KYAQDNNLL-FIQTSAKTGTNIKNIFYMLAEEIYKN 205

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} Length = 255

 Score = 80.0 bits (197), Expect = 1e-18
 Identities = 34/175 (19%), Positives = 59/175 (33%), Gaps = 30/175 (17%)

Query: 35  GKTCLLITHTENKFPTD-----YVPTVFDNYP----DTITVDNKTYDVTLWDTAGQEDY- 84
              C +    + +F  D     +  T    Y      T     +       D  G E   
Sbjct: 92  CVECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDF 151

Query: 85  -ERLRPMSYPNTDCFLLCFSI--GSTSSYENILSKWYPELKHHCP--KVPIILVGTKADL 139
            ++  P      D FLL   +  G   ++++ L K+   L +     K PI++V TK D 
Sbjct: 152 EQKQMPDGKLLVDGFLLGIDVSRGMNRNFDDQL-KFVSNLYNQLAKTKKPIVVVLTKCDE 210

Query: 140 RSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
             E              +  +    + +  K  + +E SA+ N  +D  F   V+
Sbjct: 211 GVERY------------IRDAHTFALSK--KNLQVVETSARSNVNVDLAFSTLVQ 251

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198

 Score = 56.7 bits (137), Expect = 2e-10
 Identities = 36/200 (18%), Positives = 60/200 (30%), Gaps = 35/200 (17%)

Query: 22  KALKVTTVGDGMVGKTCLL----------ITHTENKFPTDYVPTVFDNY--PDTITVDNK 69
              K+   G G+ GKT  L                   T+   T+F ++   D   V   
Sbjct: 13  INFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGF 72

Query: 70  TYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSS--YENI-----LSKWYPELK 122
                L+   GQ  Y   R +     D   + F   S  +    N      + +   E  
Sbjct: 73  KTRFHLYTVPGQVFYNASRKLILRGVDG--IVFVADSAPNRLRANAESMRNMRENLAEYG 130

Query: 123 HHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLN 182
                VPI++   K DL           A  V++V      + +  +     LE  A   
Sbjct: 131 LTLDDVPIVIQVNKRDL---------PDALPVEMVRAVVDPEGKFPV-----LEAVATEG 176

Query: 183 EGLDQVFIAAVRSAVKKQDK 202
           +G+ +      R  + +   
Sbjct: 177 KGVFETLKEVSRLVLARVAG 196

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307

 Score = 51.5 bits (123), Expect = 3e-08
 Identities = 26/145 (17%), Positives = 52/145 (35%), Gaps = 8/145 (5%)

Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTY-DVTLWDTAGQED 83
           K+  +G    GK+ +      N    D          +   +       + LWD  GQ+ 
Sbjct: 5   KLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDV 64

Query: 84  Y-----ERLRPMSYPNTDCFLLCFSIGSTSSYENI--LSKWYPELKHHCPKVPIILVGTK 136
           +      + +   +      +  F + ST   ++I   +K   +L+ + P   I ++  K
Sbjct: 65  FMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHK 124

Query: 137 ADLRSENKTIDKKKAAEVDLVSTSQ 161
            DL   +K  +  +    +L  TS 
Sbjct: 125 MDLVQLDKREELFQIMMKNLSETSS 149

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196

 Score = 48.4 bits (115), Expect = 2e-07
 Identities = 22/144 (15%), Positives = 48/144 (33%), Gaps = 9/144 (6%)

Query: 14  DVKSKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTY-D 72
                      ++  +G    GK+ +         P + +     N      + N ++ +
Sbjct: 11  RENLYFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVN 70

Query: 73  VTLWDTAGQEDYERL---RPMSYPNTDCFLLCFSIGSTSSYENILSK---WYPELKHHCP 126
             +WD  GQ D+        M +  T    L + I +   Y   L++      +     P
Sbjct: 71  FQIWDFPGQMDFFDPTFDYEMIFRGTGA--LIYVIDAQDDYMEALTRLHITVSKAYKVNP 128

Query: 127 KVPIILVGTKADLRSENKTIDKKK 150
            +   +   K D  S++  I+ ++
Sbjct: 129 DMNFEVFIHKVDGLSDDHKIETQR 152

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* Length = 413

 Score = 47.8 bits (113), Expect = 7e-07
 Identities = 27/182 (14%), Positives = 51/182 (28%), Gaps = 29/182 (15%)

Query: 24  LKVTTVGDGMVGKTCLL------ITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWD 77
           L V   G+   GK+  +          E    T  V    +             +V  WD
Sbjct: 70  LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTME---RHPYKHPNIPNVVFWD 126

Query: 78  TAG-----QEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIIL 132
             G           L  M +   D F++  +     +  +I             K     
Sbjct: 127 LPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKA------ISMMKKEFYF 180

Query: 133 VGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAA 192
           V TK D    N+   + +        T   +K+ + I+    +    +       +F+ +
Sbjct: 181 VRTKVDSDITNEADGEPQ--------TFDKEKVLQDIRLN-CVNTFRENGIAEPPIFLLS 231

Query: 193 VR 194
            +
Sbjct: 232 NK 233

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188

 Score = 38.3 bits (90), Expect = 5e-04
 Identities = 40/184 (21%), Positives = 66/184 (35%), Gaps = 44/184 (23%)

Query: 22  KALKVTTVG-DGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAG 80
           + +++T VG     GKT  +      +F  D +PTV  N      +      + LWD  G
Sbjct: 21  EEMELTLVGLQY-SGKTTFVNVIASGQFNEDMIPTVGFN---MRKITKGNVTIKLWDIGG 76

Query: 81  QEDYERLRPM---SYPNTDCFLLCFSIGST-------SSYE--NILSKWYPELKHHCPKV 128
           Q    R R M            + + + +        S  E  N+L K  P+L+     +
Sbjct: 77  Q---PRFRSMWERYCRGVSA--IVYMVDAADQEKIEASKNELHNLLDK--PQLQ----GI 125

Query: 129 PIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMR-RKIKAAEY--LECSAKLNEGL 185
           P++++G K DL             E+        +KM    I+  E      S K  + +
Sbjct: 126 PVLVLGNKRDLP------GALDEKEL-------IEKMNLSAIQDREICCYSISCKEKDNI 172

Query: 186 DQVF 189
           D   
Sbjct: 173 DITL 176

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190

 Score = 38.4 bits (90), Expect = 5e-04
 Identities = 39/190 (20%), Positives = 66/190 (34%), Gaps = 53/190 (27%)

Query: 22  KALKVTTVG-DGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTI-----TVDNKTYDVTL 75
           K + V  +G D   GKT ++     NK       +  +  P TI        + +   T+
Sbjct: 20  KEVHVLCLGLDN-SGKTTII-----NKLKPSNAQSQ-NILP-TIGFSIEKFKSSSLSFTV 71

Query: 76  WDTAGQEDYERLRPM---SYPNTDCFLLCFSIGST---------SSYENILSKWYPELKH 123
           +D +GQ    R R +    Y       + F I S+            + +L+   P++KH
Sbjct: 72  FDMSGQ---GRYRNLWEHYYKEGQA--IIFVIDSSDRLRMVVAKEELDTLLNH--PDIKH 124

Query: 124 HCPKVPIILVGTKADLRSENKTIDKKKAAEV----DLVSTSQGKKMRRKIKAAEYLECSA 179
              ++PI+    K DLR      D   + +V     L +        +           A
Sbjct: 125 R--RIPILFFANKMDLR------DAVTSVKVSQLLCLENIKD-----KPWH---ICASDA 168

Query: 180 KLNEGLDQVF 189
              EGL +  
Sbjct: 169 IKGEGLQEGV 178

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	205
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	100.0
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	100.0
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	100.0
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	100.0
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	100.0
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	100.0
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	100.0
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	100.0
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	100.0
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	100.0
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	100.0
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	100.0
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	100.0
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	100.0
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	100.0
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	100.0
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	100.0
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	100.0
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	100.0
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	100.0
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	100.0
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	100.0
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	100.0
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	100.0
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	100.0
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	100.0
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	100.0
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	100.0
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	100.0
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	100.0
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	100.0
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	100.0
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	100.0
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	100.0
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	100.0
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	100.0
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	100.0
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	100.0
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	100.0
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	100.0
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	100.0
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	100.0
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	100.0
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	100.0
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	100.0
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	100.0
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	100.0
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	100.0
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	100.0
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	100.0
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	100.0
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	100.0
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	100.0
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	100.0
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	100.0
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	100.0
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	100.0
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	100.0
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	100.0
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	100.0
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	100.0
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	100.0
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	100.0
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	100.0
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	100.0
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	100.0
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	100.0
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	100.0
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	100.0
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	100.0
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	100.0
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	100.0
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	100.0
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	100.0
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	100.0
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	100.0
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	100.0
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	100.0
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	100.0
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	100.0
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	100.0
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	100.0
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	99.98
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.98
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.98
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.97
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.97
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.97
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.97
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.97
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.97
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.97
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.97
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.97
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.97
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.97
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.97
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.97
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.97
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.97
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.96
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.96
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.96
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.96
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.96
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.96
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.95
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.95
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.95
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.95
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.95
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.95
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.95
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.94
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.94
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.94
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.94
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.94
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.93
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.93
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.92
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.92
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.92
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.92
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.92
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.92
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.91
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.91
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.9
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.9
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.9
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.9
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	99.89
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.89
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.89
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.89
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.88
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.88
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.88
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.88
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.88
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.88
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.88
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.88
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.88
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	99.87
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.86
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.86
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.86
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.86
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.86
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.86
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.86
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.85
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.85
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.85
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.85
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.85
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.85
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.85
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.85
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.84
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.84
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.84
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.84
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.83
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.83
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.83
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.82
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.82
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.82
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.81
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.81
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.81
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.8
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.8
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.79
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.78
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.78
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.77
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.77
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.77
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.75
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.75
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.75
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.73
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.73
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.73
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.72
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.7
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	99.69
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.68
2hf9_A	226	Probable hydrogenase nickel incorporation protein	99.66
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.64
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.63
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.63
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.62
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.62
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.59
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	99.57
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	99.55
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	99.55
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.49
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	99.48
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	99.48
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	99.47
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.47
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	99.41
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	99.35
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.34
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	99.21
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	99.12
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	99.01
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	98.92
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	98.88
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.88
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	98.86
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	98.85
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.82
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.8
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	98.8
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.46
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.44
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.32
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	98.29
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	98.28
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.27
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	98.23
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	98.12
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	98.01
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	97.96
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.9
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	97.89
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	97.56
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.53
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.32
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	97.28
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	97.27
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	97.21
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	97.2
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	97.2
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	97.17
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	97.16
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	97.12
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	97.1
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.09
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.09
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	97.09
2xxa_A	433	Signal recognition particle protein; protein trans	97.09
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.07
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	97.06
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.05
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	97.04
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	97.02
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.02
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	97.02
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	97.0
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	96.99
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	96.99
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	96.99
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	96.98
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	96.98
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	96.97
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	96.97
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	96.97
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	96.96
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	96.96
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	96.95
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	96.94
1sgw_A	214	Putative ABC transporter; structural genomics, P p	96.94
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	96.94
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	96.93
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	96.93
1b0u_A	262	Histidine permease; ABC transporter, transport pro	96.93
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	96.93
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	96.92
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	96.9
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	96.9
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	96.9
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	96.9
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	96.89
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	96.89
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	96.89
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	96.89
1g6h_A	257	High-affinity branched-chain amino acid transport	96.89
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	96.89
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	96.88
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	96.88
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	96.88
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	96.88
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	96.87
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	96.86
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	96.86
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	96.86
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	96.85
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	96.85
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	96.85
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	96.85
1ji0_A	240	ABC transporter; ATP binding protein, structural g	96.85
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	96.84
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	96.84
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	96.83
2ghi_A	260	Transport protein; multidrug resistance protein, M	96.83
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	96.83
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	96.82
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	96.82
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	96.81
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.81
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	96.81
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	96.8
2eyu_A	261	Twitching motility protein PILT; pilus retraction	96.8
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	96.8
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	96.79
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	96.78
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	96.78
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	96.76
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	96.75
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	96.75
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	96.75
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	96.75
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	96.73
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	96.72
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	96.71
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	96.7
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	96.7
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	96.7
4a74_A	231	DNA repair and recombination protein RADA; hydrola	96.69
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	96.69
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	96.68
2vli_A	183	Antibiotic resistance protein; transferase, tunica	96.68
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	96.67
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	96.67
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	96.66
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	96.65
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	96.65
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	96.65
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	96.64
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	96.64
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	96.63
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	96.63
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	96.63
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	96.62
1via_A	175	Shikimate kinase; structural genomics, transferase	96.62
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	96.62
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	96.6
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	96.59
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	96.59
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	96.58
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	96.57
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	96.56
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	96.56
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	96.55
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	96.55
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	96.54
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.53
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	96.53
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	96.52
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	96.52
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	96.51
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	96.5
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	96.5
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	96.5
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	96.5
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.5
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	96.49
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	96.47
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	96.46
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	96.46
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	96.45
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	96.44
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	96.44
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	96.44
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	96.43
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	96.43
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	96.41
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	96.41
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	96.41
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	96.39
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	96.38
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	96.38
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	96.38
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	96.36
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	96.35
3kta_A	182	Chromosome segregation protein SMC; structural mai	96.34
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	96.33
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	96.33
2ewv_A	372	Twitching motility protein PILT; pilus retraction	96.32
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	96.31
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	96.29
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	96.29
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	96.29
1p9r_A	418	General secretion pathway protein E; bacterial typ	96.28
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.28
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	96.28
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	96.26
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	96.25
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	96.24
3bos_A	242	Putative DNA replication factor; P-loop containing	96.21
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	96.19
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	96.19
2og2_A	359	Putative signal recognition particle receptor; nuc	96.19
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.18
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	96.18
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	96.16
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	96.14
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	96.12
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	96.12
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	96.12
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	96.11
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	96.1
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	96.09
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	96.08
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	96.08
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	96.08
2cvh_A	220	DNA repair and recombination protein RADB; filamen	96.06
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	96.05
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	96.04
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	96.0
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	95.98
1tue_A	212	Replication protein E1; helicase, replication, E1E	95.97
2chg_A	226	Replication factor C small subunit; DNA-binding pr	95.95
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	95.94
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	95.94
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	95.93
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	95.92
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	95.89
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	95.86
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	95.84
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	95.84
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	95.82
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	95.82
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	95.8
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	95.8
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	95.78
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	95.78
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	95.77
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	95.72
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	95.7
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	95.69
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	95.67
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	95.66
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	95.65
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	95.64
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	95.62
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	95.61
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	95.6
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	95.6
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	95.59
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	95.56
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	95.56
3co5_A	143	Putative two-component system transcriptional RES	95.54
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	95.53
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	95.53
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	95.53
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	95.52
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	95.51
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	95.49
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	95.47
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	95.46
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	95.45
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	95.45
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	95.44
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	95.42
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	95.4
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	95.38
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	95.38
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	95.38
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	95.37
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	95.34
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	95.34
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	95.33
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	95.3
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	95.29
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	95.29
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	95.27
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	95.27
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	95.27
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	95.24
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	95.21
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	95.2
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	95.19
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	95.17
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	95.13
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	95.11
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	95.1
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	95.1
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	95.09
2qgz_A	308	Helicase loader, putative primosome component; str	95.08
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	95.06
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	95.05
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	95.02
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	95.02
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	95.02
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	95.01
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	95.01
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	95.0
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	94.99
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	94.98
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	94.97
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	94.96

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=100.00  E-value=8e-41  Score=245.38  Aligned_cols=164  Identities=26%  Similarity=0.485  Sum_probs=140.4

Q ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEE
Q psy15714         20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCF   98 (205)
Q Consensus        20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   98 (205)
                      +.+.+||+|+|++|+|||||+++|..+.|...+.+|++..+ .+.+.+++..+++.||||+|+++|+.+++.+++.++++
T Consensus        10 P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~   89 (216)
T 4dkx_A           10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAA   89 (216)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEE
T ss_pred             CCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEE
Confidence            46779999999999999999999999999999999998766 56788899999999999999999999999999999999


Q ss_pred             EEEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEc
Q psy15714         99 LLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLEC  177 (205)
Q Consensus        99 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (205)
                      ++|||++++.+|+++. .|+..+.... +++|++|||||+|+...+            .++.++++.+++.+++. |++|
T Consensus        90 ilv~di~~~~Sf~~i~-~~~~~i~~~~~~~~piilVgNK~Dl~~~r------------~V~~~e~~~~a~~~~~~-~~e~  155 (216)
T 4dkx_A           90 VVVYDITNVNSFQQTT-KWIDDVRTERGSDVIIMLVGNKTDLADKR------------QVSIEEGERKAKELNVM-FIET  155 (216)
T ss_dssp             EEEEETTCHHHHHTHH-HHHHHHHHHHTTSSEEEEEEECTTCGGGC------------CSCHHHHHHHHHHHTCE-EEEE
T ss_pred             EEEeecchhHHHHHHH-HHHHHHHHhcCCCCeEEEEeeccchHhcC------------cccHHHHhhHHHHhCCe-eEEE
Confidence            9999999999999998 7888887654 789999999999998765            89999999999999987 9999


Q ss_pred             ccCCCCCHHHHHHHHHHHHH
Q psy15714        178 SAKLNEGLDQVFIAAVRSAV  197 (205)
Q Consensus       178 Sa~~~~~i~~~~~~i~~~~~  197 (205)
                      ||++|+||+++|+.|++.+.
T Consensus       156 SAktg~nV~e~F~~i~~~i~  175 (216)
T 4dkx_A          156 SAKAGYNVKQLFRRVAAALP  175 (216)
T ss_dssp             BTTTTBSHHHHHHHHHHHC-
T ss_pred             eCCCCcCHHHHHHHHHHHHH
Confidence            99999999999999998764

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=8.9e-37  Score=220.66  Aligned_cols=187  Identities=44%  Similarity=0.808  Sum_probs=160.8

Q ss_pred             CccccccccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccC
Q psy15714         12 DKDVKSKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMS   91 (205)
Q Consensus        12 ~~~~~~~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~   91 (205)
                      ...|......+.+||+++|.+|+|||||++++.++.+...+.+|.+..+...+.+++..+.+.+||+||+++++.++..+
T Consensus         7 ~~~m~~~~~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~   86 (194)
T 2atx_A            7 RSSMAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLS   86 (194)
T ss_dssp             --CCSSCCEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGG
T ss_pred             ccccCCCCCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHh
Confidence            34455556678899999999999999999999999998888888887777777888888999999999999999999999


Q ss_pred             cCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCC
Q psy15714         92 YPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKA  171 (205)
Q Consensus        92 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (205)
                      ++.+|++++|||++++.++..+...|+..+....+++|+++|+||+|+...............+.++.+++..+++.++.
T Consensus        87 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  166 (194)
T 2atx_A           87 YPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGA  166 (194)
T ss_dssp             CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTC
T ss_pred             cCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCC
Confidence            99999999999999999999987689999988878999999999999987643333333333346788999999999998


Q ss_pred             ceEEEcccCCCCCHHHHHHHHHHHHHh
Q psy15714        172 AEYLECSAKLNEGLDQVFIAAVRSAVK  198 (205)
Q Consensus       172 ~~~~~~Sa~~~~~i~~~~~~i~~~~~~  198 (205)
                      .+++++||++|+|++++|+++.+.++.
T Consensus       167 ~~~~~~Sa~~g~gi~~l~~~l~~~i~~  193 (194)
T 2atx_A          167 CCYVECSALTQKGLKTVFDEAIIAILT  193 (194)
T ss_dssp             SCEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred             cEEEEeeCCCCCCHHHHHHHHHHHHhc
Confidence            569999999999999999999998764

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=100.00  E-value=3.5e-37  Score=226.29  Aligned_cols=190  Identities=31%  Similarity=0.584  Sum_probs=155.2

Q ss_pred             CccccccccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccC
Q psy15714         12 DKDVKSKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMS   91 (205)
Q Consensus        12 ~~~~~~~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~   91 (205)
                      .+..........+||+++|.+|+|||||+++|.++.+...+.+|.+..+...+.+++..+.+.|||++|++.|+.++..+
T Consensus        16 ~q~~~~~~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~   95 (214)
T 3q3j_B           16 FQGRAPQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLC   95 (214)
T ss_dssp             -----------CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGG
T ss_pred             hhccCCCCccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHH
Confidence            33344556678899999999999999999999999999888999988887777888889999999999999999999999


Q ss_pred             cCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCC
Q psy15714         92 YPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKA  171 (205)
Q Consensus        92 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (205)
                      ++.+|++|+|||++++.++..+...|+..+....+++|+++|+||+|+...............+.++.+++..+++.+++
T Consensus        96 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  175 (214)
T 3q3j_B           96 YSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGA  175 (214)
T ss_dssp             CTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTC
T ss_pred             cCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCC
Confidence            99999999999999999999955599999999888999999999999987543332223333457889999999999999


Q ss_pred             ceEEEcccCCCCC-HHHHHHHHHHHHHhhcc
Q psy15714        172 AEYLECSAKLNEG-LDQVFIAAVRSAVKKQD  201 (205)
Q Consensus       172 ~~~~~~Sa~~~~~-i~~~~~~i~~~~~~~~~  201 (205)
                      .+++++||++|.| ++++|+++++.+....+
T Consensus       176 ~~~~e~SA~~g~g~v~~lf~~l~~~~~~~~~  206 (214)
T 3q3j_B          176 EIYLEGSAFTSEKSIHSIFRTASMLCLNKPS  206 (214)
T ss_dssp             SEEEECCTTTCHHHHHHHHHHHHHHHHC---
T ss_pred             CEEEEeccCCCcccHHHHHHHHHHHHhccCc
Confidence            5699999999998 99999999999877644

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=100.00  E-value=1.5e-36  Score=220.61  Aligned_cols=187  Identities=43%  Similarity=0.793  Sum_probs=149.3

Q ss_pred             cccccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCC
Q psy15714         16 KSKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNT   95 (205)
Q Consensus        16 ~~~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~   95 (205)
                      ........+||+++|.+|+|||||++++.++.+...+.+|++..+...+.+++..+.+.+||+||++.|+.++..++.++
T Consensus        13 ~~~~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   92 (201)
T 2q3h_A           13 AGGAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNT   92 (201)
T ss_dssp             -------CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTC
T ss_pred             cCCCCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCC
Confidence            34556788999999999999999999999999888888888877777788899999999999999999999999999999


Q ss_pred             cEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEE
Q psy15714         96 DCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYL  175 (205)
Q Consensus        96 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (205)
                      |++++|||++++.++..+...|+..+....+++|+++|+||+|+...............+.+..+++..+++.++..+++
T Consensus        93 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  172 (201)
T 2q3h_A           93 DIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYI  172 (201)
T ss_dssp             SEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEE
T ss_pred             cEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEE
Confidence            99999999999999999876899999888789999999999999865432222222223467888999999999986699


Q ss_pred             EcccCCCCCHHHHHHHHHHHHHhhccc
Q psy15714        176 ECSAKLNEGLDQVFIAAVRSAVKKQDK  202 (205)
Q Consensus       176 ~~Sa~~~~~i~~~~~~i~~~~~~~~~~  202 (205)
                      ++||++|.|++++|+++.+.+.+.+.+
T Consensus       173 ~~Sa~~g~gi~~l~~~l~~~~~~~~~~  199 (201)
T 2q3h_A          173 ECSALTQKNLKEVFDAAIVAGIQYSDT  199 (201)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHHHHHC-
T ss_pred             EEecCCCCCHHHHHHHHHHHHhccccc
Confidence            999999999999999999998876553

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=100.00  E-value=8.3e-36  Score=215.62  Aligned_cols=174  Identities=42%  Similarity=0.808  Sum_probs=156.5

Q ss_pred             cccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcE
Q psy15714         18 KSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDC   97 (205)
Q Consensus        18 ~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   97 (205)
                      ....+.+||+++|.+|+|||||++++.++.+...+.+|.+..+...+.+++..+.+.+||+||++.+...+..+++++|+
T Consensus        18 ~~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   97 (194)
T 3reg_A           18 ENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDV   97 (194)
T ss_dssp             ---CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred             cccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcE
Confidence            34567899999999999999999999999998888999888887788899999999999999999999999999999999


Q ss_pred             EEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEc
Q psy15714         98 FLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLEC  177 (205)
Q Consensus        98 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (205)
                      +++|||++++.++..+...|+..+....+++|+++|+||+|+.....          +.+..++++.+++.++...++++
T Consensus        98 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~  167 (194)
T 3reg_A           98 VLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGS----------DDVTKQEGDDLCQKLGCVAYIEA  167 (194)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTT----------TCCCHHHHHHHHHHHTCSCEEEC
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCC----------CcccHHHHHHHHHhcCCCEEEEe
Confidence            99999999999999986689999998888999999999999976421          26788999999999998879999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHhhcc
Q psy15714        178 SAKLNEGLDQVFIAAVRSAVKKQD  201 (205)
Q Consensus       178 Sa~~~~~i~~~~~~i~~~~~~~~~  201 (205)
                      ||++|+|++++|+++.+.+...+.
T Consensus       168 Sa~~~~gi~~l~~~l~~~i~~~~~  191 (194)
T 3reg_A          168 SSVAKIGLNEVFEKSVDCIFSNKP  191 (194)
T ss_dssp             BTTTTBSHHHHHHHHHHHHHCSCC
T ss_pred             ecCCCCCHHHHHHHHHHHHHhcCC
Confidence            999999999999999999887654

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=100.00  E-value=1.1e-35  Score=213.25  Aligned_cols=181  Identities=54%  Similarity=0.961  Sum_probs=158.6

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEE
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLL  100 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~  100 (205)
                      ++.+||+++|.+|+|||||++++.++.+...+.++.+..+...+.+++..+.+.+||+||++.++..+..+++.+|++++
T Consensus         3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~   82 (186)
T 1mh1_A            3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI   82 (186)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence            46799999999999999999999999998888888887777778889999999999999999999999999999999999


Q ss_pred             EEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccC
Q psy15714        101 CFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAK  180 (205)
Q Consensus       101 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  180 (205)
                      |||++++.++..+...|+..+....+++|+++|+||+|+.......+.......+.++.+++..+++..+..+++++||+
T Consensus        83 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~  162 (186)
T 1mh1_A           83 CFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL  162 (186)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred             EEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecCC
Confidence            99999999999987679999988778999999999999987654333333333457888999999999998669999999


Q ss_pred             CCCCHHHHHHHHHHHHHhhcc
Q psy15714        181 LNEGLDQVFIAAVRSAVKKQD  201 (205)
Q Consensus       181 ~~~~i~~~~~~i~~~~~~~~~  201 (205)
                      +|.|++++|+++.+.+.+...
T Consensus       163 ~g~gi~~l~~~l~~~~~~~~~  183 (186)
T 1mh1_A          163 TQRGLKTVFDEAIRAVLCPPP  183 (186)
T ss_dssp             TCTTHHHHHHHHHHHHSCCCC
T ss_pred             CccCHHHHHHHHHHHHhcccc
Confidence            999999999999999876554

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=100.00  E-value=6.9e-36  Score=214.36  Aligned_cols=179  Identities=37%  Similarity=0.734  Sum_probs=152.9

Q ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEE
Q psy15714         20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFL   99 (205)
Q Consensus        20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   99 (205)
                      ....+||+++|++|+|||||+++|.++.+...+.++.+..+...+.+++..+.+.+||+||++.|+.++..+++.+|+++
T Consensus         4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i   83 (184)
T 1m7b_A            4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL   83 (184)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEE
Confidence            45679999999999999999999999999888888888777667788888999999999999999999999999999999


Q ss_pred             EEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEccc
Q psy15714        100 LCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSA  179 (205)
Q Consensus       100 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  179 (205)
                      +|||++++.++..+...|+..+....+++|+++|+||+|+...............+.++.++++.+++.++..+++++||
T Consensus        84 ~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa  163 (184)
T 1m7b_A           84 ICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA  163 (184)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBT
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEeee
Confidence            99999999999998558999998887899999999999997643222111112234678889999999988666999999


Q ss_pred             C-CCCCHHHHHHHHHHHHHh
Q psy15714        180 K-LNEGLDQVFIAAVRSAVK  198 (205)
Q Consensus       180 ~-~~~~i~~~~~~i~~~~~~  198 (205)
                      + +++|++++|+++.+.+++
T Consensus       164 ~~~~~gi~~l~~~i~~~~l~  183 (184)
T 1m7b_A          164 LQSENSVRDIFHVATLACVN  183 (184)
T ss_dssp             TTBHHHHHHHHHHHHHHHHT
T ss_pred             cCCCcCHHHHHHHHHHHHhc
Confidence            9 689999999999998875

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=100.00  E-value=9.9e-36  Score=218.54  Aligned_cols=183  Identities=42%  Similarity=0.850  Sum_probs=138.7

Q ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEE
Q psy15714         20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFL   99 (205)
Q Consensus        20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   99 (205)
                      ..+.+||+++|.+|+|||||+++|.++.+...+.++....+...+.+++..+.+.+||+||++.++.++..+++.+|+++
T Consensus        31 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i  110 (214)
T 2j1l_A           31 GVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL  110 (214)
T ss_dssp             -CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred             CcceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence            34679999999999999999999999998888888887777777888999999999999999999999999999999999


Q ss_pred             EEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEccc
Q psy15714        100 LCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSA  179 (205)
Q Consensus       100 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  179 (205)
                      +|||++++.++..+...|+..+....+++|+++|+||+|+.......+.......+.++.++++.+++..+..+++++||
T Consensus       111 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA  190 (214)
T 2j1l_A          111 LCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSA  190 (214)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECBT
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEecC
Confidence            99999999999998768999998887899999999999998765444433334455788899999999999866999999


Q ss_pred             CCCCCHHHHHHHHHHHHHhhccc
Q psy15714        180 KLNEGLDQVFIAAVRSAVKKQDK  202 (205)
Q Consensus       180 ~~~~~i~~~~~~i~~~~~~~~~~  202 (205)
                      ++|.|++++|+++.+.+.+.+.+
T Consensus       191 ~~g~gi~el~~~l~~~~~~~~~r  213 (214)
T 2j1l_A          191 RLHDNVHAVFQEAAEVALSSRGR  213 (214)
T ss_dssp             TTTBSHHHHHHHHHHHHHHC---
T ss_pred             CCCCCHHHHHHHHHHHHHHhhcC
Confidence            99999999999999999876543

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=100.00  E-value=2e-35  Score=212.72  Aligned_cols=185  Identities=26%  Similarity=0.483  Sum_probs=152.0

Q ss_pred             CCCccCCCCCccccccccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCC
Q psy15714          3 SGAQTTKGGDKDVKSKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQ   81 (205)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~   81 (205)
                      +++++.....+..........+||+|+|.+|+|||||++++.++.+...+.++.+..+ ...+..++..+.+.+||+||+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~   81 (189)
T 2gf9_A            2 GSSHHHHHHSSGLVPRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQ   81 (189)
T ss_dssp             ------------CCCTTCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSC
T ss_pred             CccccccccccCCCCcccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCc
Confidence            3444444444445555677889999999999999999999999998877777776665 356677888899999999999


Q ss_pred             cccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHH
Q psy15714         82 EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTS  160 (205)
Q Consensus        82 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~  160 (205)
                      +.++..+..+++.+|++++|||++++.++..+. .|+..+.... .++|+++|+||+|+...+            .+..+
T Consensus        82 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~~~------------~~~~~  148 (189)
T 2gf9_A           82 ERYRTITTAYYRGAMGFLLMYDIANQESFAAVQ-DWATQIKTYSWDNAQVILVGNKCDLEDER------------VVPAE  148 (189)
T ss_dssp             CSSCCSGGGGGTTCSEEEEEEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECTTCGGGC------------CSCHH
T ss_pred             HHHhhhHHHhccCCCEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECccccccc------------CCCHH
Confidence            999999999999999999999999999999887 7988888765 689999999999997654            66778


Q ss_pred             HHHHHHHHcCCceEEEcccCCCCCHHHHHHHHHHHHHhhcc
Q psy15714        161 QGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQD  201 (205)
Q Consensus       161 ~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~  201 (205)
                      +++.+++..+.. ++++||++|.|++++|+++.+.+.++.+
T Consensus       149 ~~~~~~~~~~~~-~~~~Sa~~g~gi~~l~~~l~~~i~~~~~  188 (189)
T 2gf9_A          149 DGRRLADDLGFE-FFEASAKENINVKQVFERLVDVICEKMN  188 (189)
T ss_dssp             HHHHHHHHHTCE-EEECBTTTTBSHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCe-EEEEECCCCCCHHHHHHHHHHHHHHHhc
Confidence            889999998876 9999999999999999999999877543

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=100.00  E-value=5.7e-35  Score=212.48  Aligned_cols=180  Identities=52%  Similarity=0.907  Sum_probs=157.1

Q ss_pred             ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEE
Q psy15714         19 SVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCF   98 (205)
Q Consensus        19 ~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   98 (205)
                      .....+||+++|.+|+|||||++++.++.+...+.++.+..+...+.+++..+.+.+||+||++.++..+..+++.+|++
T Consensus        21 m~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~  100 (201)
T 2gco_A           21 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVI  100 (201)
T ss_dssp             -CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEE
T ss_pred             CcccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEE
Confidence            34578999999999999999999999999988888888888766788899999999999999999999999999999999


Q ss_pred             EEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcc
Q psy15714         99 LLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECS  178 (205)
Q Consensus        99 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  178 (205)
                      ++|||++++.++..+...|+..+....+++|+++|+||+|+.......+.......+.+..+++..+++..+..+++++|
T Consensus       101 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  180 (201)
T 2gco_A          101 LMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECS  180 (201)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEee
Confidence            99999999999999866899999888789999999999999876543333333333468888999999999986699999


Q ss_pred             cCCCCCHHHHHHHHHHHHHh
Q psy15714        179 AKLNEGLDQVFIAAVRSAVK  198 (205)
Q Consensus       179 a~~~~~i~~~~~~i~~~~~~  198 (205)
                      |++|+|++++|++|.+.+++
T Consensus       181 A~~g~gi~~l~~~i~~~~l~  200 (201)
T 2gco_A          181 AKTKEGVREVFEMATRAGLQ  200 (201)
T ss_dssp             TTTCTTHHHHHHHHHHHHHC
T ss_pred             CCCCCCHHHHHHHHHHHHhc
Confidence            99999999999999988753

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=100.00  E-value=1.4e-35  Score=214.02  Aligned_cols=174  Identities=25%  Similarity=0.483  Sum_probs=149.5

Q ss_pred             ccccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCC
Q psy15714         17 SKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNT   95 (205)
Q Consensus        17 ~~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~   95 (205)
                      .......+||+|+|.+|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.++..+..+++.+
T Consensus        15 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   94 (191)
T 2a5j_A           15 VPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGA   94 (191)
T ss_dssp             CCTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTC
T ss_pred             ccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccC
Confidence            44557889999999999999999999999998877777776665 45677889899999999999999999999999999


Q ss_pred             cEEEEEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceE
Q psy15714         96 DCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEY  174 (205)
Q Consensus        96 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (205)
                      |++++|||++++.++..+. .|+..+.... .++|+++|+||+|+...+            .+..++++.+++..+.. +
T Consensus        95 d~ii~v~d~~~~~s~~~~~-~~l~~i~~~~~~~~piilv~nK~Dl~~~~------------~v~~~~~~~~~~~~~~~-~  160 (191)
T 2a5j_A           95 AGALLVYDITRRETFNHLT-SWLEDARQHSSSNMVIMLIGNKSDLESRR------------DVKREEGEAFAREHGLI-F  160 (191)
T ss_dssp             SEEEEEEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECTTCGGGC------------CSCHHHHHHHHHHHTCE-E
T ss_pred             CEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECcccCCcc------------ccCHHHHHHHHHHcCCE-E
Confidence            9999999999999999987 7888887765 689999999999997654            67788889999988876 9


Q ss_pred             EEcccCCCCCHHHHHHHHHHHHHhhcccCC
Q psy15714        175 LECSAKLNEGLDQVFIAAVRSAVKKQDKSC  204 (205)
Q Consensus       175 ~~~Sa~~~~~i~~~~~~i~~~~~~~~~~~~  204 (205)
                      +++||+++.|++++|++|.+.+.++.++++
T Consensus       161 ~~~Sa~~~~gi~~l~~~l~~~i~~~~~~~~  190 (191)
T 2a5j_A          161 METSAKTACNVEEAFINTAKEIYRKIQQGL  190 (191)
T ss_dssp             EEECTTTCTTHHHHHHHHHHHHHHHHHTTC
T ss_pred             EEEeCCCCCCHHHHHHHHHHHHHHHHHhcc
Confidence            999999999999999999999988776654

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=100.00  E-value=1.1e-35  Score=216.91  Aligned_cols=181  Identities=37%  Similarity=0.733  Sum_probs=153.1

Q ss_pred             ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEE
Q psy15714         19 SVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCF   98 (205)
Q Consensus        19 ~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   98 (205)
                      .....+||+++|++|+|||||+++|.++.+...+.+|.+..+...+.+++..+.+.+||+||++.|+.++..+++.+|++
T Consensus        24 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~  103 (205)
T 1gwn_A           24 NQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV  103 (205)
T ss_dssp             ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEE
Confidence            34678999999999999999999999999988888888877766777888889999999999999999999999999999


Q ss_pred             EEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcc
Q psy15714         99 LLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECS  178 (205)
Q Consensus        99 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  178 (205)
                      ++|||++++.++..+...|+..+....+++|+++|+||+|+...............+.++.++++.+++.++..+++++|
T Consensus       104 ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S  183 (205)
T 1gwn_A          104 LICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECS  183 (205)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECC
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEee
Confidence            99999999999999855899999888789999999999999764322211111223467888999999998866699999


Q ss_pred             cC-CCCCHHHHHHHHHHHHHhh
Q psy15714        179 AK-LNEGLDQVFIAAVRSAVKK  199 (205)
Q Consensus       179 a~-~~~~i~~~~~~i~~~~~~~  199 (205)
                      |+ +++|++++|+++++.++++
T Consensus       184 Ak~~~~gv~~lf~~l~~~~l~~  205 (205)
T 1gwn_A          184 ALQSENSVRDIFHVATLACVNK  205 (205)
T ss_dssp             TTTCHHHHHHHHHHHHHHHHHC
T ss_pred             eccCCcCHHHHHHHHHHHHhhC
Confidence            99 6899999999999988753

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=100.00  E-value=1.1e-35  Score=217.76  Aligned_cols=177  Identities=50%  Similarity=0.931  Sum_probs=152.2

Q ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEE
Q psy15714         20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFL   99 (205)
Q Consensus        20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   99 (205)
                      ....+||+++|++|+|||||+++|.++.+...+.+|++..+...+.+++..+.+.+||+||++.|+.++..+++++|+++
T Consensus         6 ~~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   85 (212)
T 2j0v_A            6 VSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFV   85 (212)
T ss_dssp             CCCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEE
T ss_pred             cCceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEE
Confidence            35779999999999999999999999999888888888777777788888999999999999999999999999999999


Q ss_pred             EEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEccc
Q psy15714        100 LCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSA  179 (205)
Q Consensus       100 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  179 (205)
                      +|||++++.++..+...|+..+....+++|+++|+||+|+...+.....    ....++.+++..+++.++..+++++||
T Consensus        86 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~Sa  161 (212)
T 2j0v_A           86 LAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLAD----HTNVITSTQGEELRKQIGAAAYIECSS  161 (212)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHT----CSSCCCHHHHHHHHHHHTCSEEEECCT
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCcccccc----ccCCCCHHHHHHHHHHcCCceEEEccC
Confidence            9999999999999876899999888789999999999999765421110    112457888999999999866999999


Q ss_pred             CCCCCHHHHHHHHHHHHHhhc
Q psy15714        180 KLNEGLDQVFIAAVRSAVKKQ  200 (205)
Q Consensus       180 ~~~~~i~~~~~~i~~~~~~~~  200 (205)
                      ++|+|++++|+++++.+....
T Consensus       162 ~~g~gi~~l~~~l~~~~~~~~  182 (212)
T 2j0v_A          162 KTQQNVKAVFDTAIKVVLQPP  182 (212)
T ss_dssp             TTCTTHHHHHHHHHHHHHCC-
T ss_pred             CCCCCHHHHHHHHHHHHhhhh
Confidence            999999999999999987643

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=100.00  E-value=1.6e-35  Score=212.63  Aligned_cols=169  Identities=22%  Similarity=0.381  Sum_probs=144.6

Q ss_pred             ccccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCc
Q psy15714         17 SKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTD   96 (205)
Q Consensus        17 ~~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   96 (205)
                      .....+.+||+++|++|+|||||++++.++.+...+.++ ...+...+.+++..+.+.+||++|++.++     +++.+|
T Consensus        14 ~~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t-~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~   87 (184)
T 3ihw_A           14 LYFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPE-GGRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVD   87 (184)
T ss_dssp             --CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTT-CEEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCS
T ss_pred             CCCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCC-cceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCC
Confidence            345678899999999999999999999999998877777 44455788899999999999999998877     677899


Q ss_pred             EEEEEEECCCcchHHHHHHHHHHHHhhhC--CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceE
Q psy15714         97 CFLLCFSIGSTSSYENILSKWYPELKHHC--PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEY  174 (205)
Q Consensus        97 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (205)
                      ++++|||++++.+++.+. .|+..+....  .++|+++|+||+|+.....          +.++.++++.+++.++..++
T Consensus        88 ~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~~v~~~~~~~~~~~~~~~~~  156 (184)
T 3ihw_A           88 AVVFVFSLEDEISFQTVY-NYFLRLCSFRNASEVPMVLVGTQDAISAANP----------RVIDDSRARKLSTDLKRCTY  156 (184)
T ss_dssp             EEEEEEETTCHHHHHHHH-HHHHHHHTTSCGGGSCEEEEEECTTCBTTBC----------CCSCHHHHHHHHHHTTTCEE
T ss_pred             EEEEEEECcCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECcccccccc----------cccCHHHHHHHHHHcCCCeE
Confidence            999999999999999987 7999887764  5899999999999953221          27888999999999985569


Q ss_pred             EEcccCCCCCHHHHHHHHHHHHHhhccc
Q psy15714        175 LECSAKLNEGLDQVFIAAVRSAVKKQDK  202 (205)
Q Consensus       175 ~~~Sa~~~~~i~~~~~~i~~~~~~~~~~  202 (205)
                      +++||++|+|++++|+++++.+...+++
T Consensus       157 ~e~Sa~~~~gv~~lf~~l~~~i~~~~~k  184 (184)
T 3ihw_A          157 YETCATYGLNVERVFQDVAQKVVALRKK  184 (184)
T ss_dssp             EEEBTTTTBTHHHHHHHHHHHHHHHC--
T ss_pred             EEecCCCCCCHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999887654

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=100.00  E-value=2.3e-35  Score=215.05  Aligned_cols=178  Identities=54%  Similarity=0.984  Sum_probs=155.5

Q ss_pred             ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEE
Q psy15714         19 SVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCF   98 (205)
Q Consensus        19 ~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   98 (205)
                      ...+.+||+++|.+|+|||||++++..+.+...+.++....+...+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus        26 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~  105 (204)
T 4gzl_A           26 FQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVF  105 (204)
T ss_dssp             ----CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             hcCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEE
Confidence            34678999999999999999999999999988888888877777788899999999999999999999999999999999


Q ss_pred             EEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcc
Q psy15714         99 LLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECS  178 (205)
Q Consensus        99 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  178 (205)
                      ++|||++++.++..+...|+..+....+++|+++|+||+|+.......+.......+.+..+++..+++..+..+++++|
T Consensus       106 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  185 (204)
T 4gzl_A          106 LICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS  185 (204)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEee
Confidence            99999999999999876899999988889999999999999887655554444555568899999999999988899999


Q ss_pred             cCCCCCHHHHHHHHHHHH
Q psy15714        179 AKLNEGLDQVFIAAVRSA  196 (205)
Q Consensus       179 a~~~~~i~~~~~~i~~~~  196 (205)
                      |++|+|++++|+++.+.+
T Consensus       186 A~~g~gi~~l~~~l~~~~  203 (204)
T 4gzl_A          186 ALTQRGLKTVFDEAIRAV  203 (204)
T ss_dssp             TTTCTTHHHHHHHHHHTT
T ss_pred             CCCCCCHHHHHHHHHHHh
Confidence            999999999999998754

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=100.00  E-value=1.8e-35  Score=212.77  Aligned_cols=167  Identities=23%  Similarity=0.366  Sum_probs=142.8

Q ss_pred             ccccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCc
Q psy15714         17 SKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTD   96 (205)
Q Consensus        17 ~~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   96 (205)
                      .....+.+||+++|.+|+|||||+++|.++.+...+.+|++..+...+.+++..+.+.+||+||++.++.+ ..+++.+|
T Consensus        15 ~~~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~   93 (187)
T 3c5c_A           15 YFQGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAH   93 (187)
T ss_dssp             -----CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCS
T ss_pred             HhCCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCC
Confidence            34457789999999999999999999999999888889988877677788999999999999999998875 56889999


Q ss_pred             EEEEEEECCCcchHHHHHHHHHHHHhhhC----CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCc
Q psy15714         97 CFLLCFSIGSTSSYENILSKWYPELKHHC----PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAA  172 (205)
Q Consensus        97 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (205)
                      ++++|||++++.+++.+. .|+..+....    .++|+++|+||+|+...+            .++.++++.+++.+++.
T Consensus        94 ~~ilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~------------~v~~~~~~~~~~~~~~~  160 (187)
T 3c5c_A           94 AFLVVYSVDSRQSFDSSS-SYLELLALHAKETQRSIPALLLGNKLDMAQYR------------QVTKAEGVALAGRFGCL  160 (187)
T ss_dssp             EEEEEEETTCHHHHHHHH-HHHHHHHHHHHHHCCCCCEEEEEECGGGGGGC------------SSCHHHHHHHHHHHTCE
T ss_pred             EEEEEEECCCHHHHHHHH-HHHHHHHHHhhccCCCCCEEEEEECcchhhcC------------ccCHHHHHHHHHHcCCc
Confidence            999999999999999987 7988887653    689999999999997654            67888999999999986


Q ss_pred             eEEEccc-CCCCCHHHHHHHHHHHHHh
Q psy15714        173 EYLECSA-KLNEGLDQVFIAAVRSAVK  198 (205)
Q Consensus       173 ~~~~~Sa-~~~~~i~~~~~~i~~~~~~  198 (205)
                       ++++|| ++++|++++|+++++.+.+
T Consensus       161 -~~e~Sa~~~g~gv~~lf~~l~~~i~~  186 (187)
T 3c5c_A          161 -FFEVSACLDFEHVQHVFHEAVREARR  186 (187)
T ss_dssp             -EEECCSSSCSHHHHHHHHHHHHHHHC
T ss_pred             -EEEEeecCccccHHHHHHHHHHHHhh
Confidence             999999 8999999999999988754

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.2e-34  Score=211.60  Aligned_cols=181  Identities=52%  Similarity=0.911  Sum_probs=152.0

Q ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEE
Q psy15714         20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFL   99 (205)
Q Consensus        20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   99 (205)
                      ....+||+++|.+|+|||||++++.++.+...+.++.+..+...+.+++..+.+.+||+||++.+...+..++..+|+++
T Consensus        22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i  101 (207)
T 2fv8_A           22 SMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL  101 (207)
T ss_dssp             GSEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred             cccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence            45678999999999999999999999999888888887777666788999999999999999999999999999999999


Q ss_pred             EEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEccc
Q psy15714        100 LCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSA  179 (205)
Q Consensus       100 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  179 (205)
                      +|||++++.++..+...|+..+....+++|+++|+||+|+.......+.......+.+..+++..+++..+..+++++||
T Consensus       102 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA  181 (207)
T 2fv8_A          102 MCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSA  181 (207)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEeeC
Confidence            99999999999998668999998877899999999999998765443333333345678889999999999866999999


Q ss_pred             CCCCCHHHHHHHHHHHHHhhc
Q psy15714        180 KLNEGLDQVFIAAVRSAVKKQ  200 (205)
Q Consensus       180 ~~~~~i~~~~~~i~~~~~~~~  200 (205)
                      ++|.|++++|++|.+.+...+
T Consensus       182 ~~g~gi~el~~~l~~~i~~~~  202 (207)
T 2fv8_A          182 KTKEGVREVFETATRAALQKR  202 (207)
T ss_dssp             TTCTTHHHHHHHHHHHHHSCC
T ss_pred             CCCCCHHHHHHHHHHHHHHHh
Confidence            999999999999999987653

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=7.1e-35  Score=212.00  Aligned_cols=170  Identities=25%  Similarity=0.487  Sum_probs=150.0

Q ss_pred             cccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCc
Q psy15714         18 KSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTD   96 (205)
Q Consensus        18 ~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   96 (205)
                      ....+.+||+++|.+|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.++.++..+++.+|
T Consensus        21 ~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d  100 (201)
T 2ew1_A           21 EDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSAN  100 (201)
T ss_dssp             -CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCS
T ss_pred             cccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCC
Confidence            3456789999999999999999999999999887778876655 457778899999999999999999999999999999


Q ss_pred             EEEEEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEE
Q psy15714         97 CFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYL  175 (205)
Q Consensus        97 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (205)
                      ++++|||++++.++..+. .|+..+.... .++|+++|+||+|+...+            .+..++++.+++..+.. ++
T Consensus       101 ~~i~v~D~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~NK~Dl~~~~------------~v~~~~~~~~~~~~~~~-~~  166 (201)
T 2ew1_A          101 ALILTYDITCEESFRCLP-EWLREIEQYASNKVITVLVGNKIDLAERR------------EVSQQRAEEFSEAQDMY-YL  166 (201)
T ss_dssp             EEEEEEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECGGGGGGC------------SSCHHHHHHHHHHHTCC-EE
T ss_pred             EEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECCCCcccc------------ccCHHHHHHHHHHcCCE-EE
Confidence            999999999999999987 8998888765 689999999999997654            67788888898888876 99


Q ss_pred             EcccCCCCCHHHHHHHHHHHHHhhcc
Q psy15714        176 ECSAKLNEGLDQVFIAAVRSAVKKQD  201 (205)
Q Consensus       176 ~~Sa~~~~~i~~~~~~i~~~~~~~~~  201 (205)
                      ++||++|+|++++|+++.+.+..+.+
T Consensus       167 ~~Sa~~g~gv~~l~~~l~~~i~~~~~  192 (201)
T 2ew1_A          167 ETSAKESDNVEKLFLDLACRLISEAR  192 (201)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHHHHHC
T ss_pred             EEeCCCCCCHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999887544

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=100.00  E-value=3.5e-35  Score=213.67  Aligned_cols=171  Identities=22%  Similarity=0.428  Sum_probs=143.5

Q ss_pred             cccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCc
Q psy15714         18 KSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTD   96 (205)
Q Consensus        18 ~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   96 (205)
                      ......+||+++|.+|+|||||++++.++.+...+.+|.+..+ ...+.+++..+.+.+||+||++.++..+..+++.+|
T Consensus        24 ~~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d  103 (201)
T 2hup_A           24 EQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSAN  103 (201)
T ss_dssp             --CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCS
T ss_pred             cccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCC
Confidence            4456789999999999999999999999998877778876655 566778888899999999999999999999999999


Q ss_pred             EEEEEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEE
Q psy15714         97 CFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYL  175 (205)
Q Consensus        97 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (205)
                      ++|+|||++++.+++.+. .|+..+.... .++|+++|+||+|+...+            .++.++++.+++..+..+++
T Consensus       104 ~iilv~D~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~NK~Dl~~~~------------~v~~~~~~~~~~~~~~~~~~  170 (201)
T 2hup_A          104 GAILAYDITKRSSFLSVP-HWIEDVRKYAGSNIVQLLIGNKSDLSELR------------EVSLAEAQSLAEHYDILCAI  170 (201)
T ss_dssp             EEEEEEETTBHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECTTCGGGC------------CSCHHHHHHHHHHTTCSEEE
T ss_pred             EEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECCcccccc------------ccCHHHHHHHHHHcCCCEEE
Confidence            999999999999999987 8988888766 789999999999997654            67788899999999985599


Q ss_pred             EcccCCCCCHHHHHHHHHHHHHhhcc
Q psy15714        176 ECSAKLNEGLDQVFIAAVRSAVKKQD  201 (205)
Q Consensus       176 ~~Sa~~~~~i~~~~~~i~~~~~~~~~  201 (205)
                      ++||++++|++++|++|.+.+..+.+
T Consensus       171 ~~SA~~g~gi~~l~~~l~~~i~~~~~  196 (201)
T 2hup_A          171 ETSAKDSSNVEEAFLRVATELIMRHG  196 (201)
T ss_dssp             ECBTTTTBSHHHHHHHHHHHHHHHTT
T ss_pred             EEeCCCCCCHHHHHHHHHHHHHHhcc
Confidence            99999999999999999999987654

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=100.00  E-value=3.5e-35  Score=213.96  Aligned_cols=165  Identities=32%  Similarity=0.501  Sum_probs=148.9

Q ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEE
Q psy15714         20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFL   99 (205)
Q Consensus        20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   99 (205)
                      ....+||+|+|.+|+|||||++++.++.+...+.++.+..+...+.+++..+.+.+||+||++.+..++..+++.+|+++
T Consensus        11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i   90 (206)
T 2bov_A           11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL   90 (206)
T ss_dssp             CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEE
Confidence            45679999999999999999999999999888888888777777888999999999999999999999889999999999


Q ss_pred             EEEECCCcchHHHHHHHHHHHHhhhC--CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEc
Q psy15714        100 LCFSIGSTSSYENILSKWYPELKHHC--PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLEC  177 (205)
Q Consensus       100 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (205)
                      +|||++++.++..+. .|+..+....  .++|+++|+||+|+...+            .+..+++..+++.++.. ++++
T Consensus        91 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~-~~~~  156 (206)
T 2bov_A           91 CVFSITEMESFAATA-DFREQILRVKEDENVPFLLVGNKSDLEDKR------------QVSVEEAKNRAEQWNVN-YVET  156 (206)
T ss_dssp             EEEETTCHHHHHHHH-HHHHHHHHHTTCSCCCEEEEEECTTCGGGC------------CSCHHHHHHHHHHHTCE-EEEE
T ss_pred             EEEECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEeccCccccc------------cccHHHHHHHHHHhCCe-EEEE
Confidence            999999999999987 7888887765  489999999999997654            67788899999888875 9999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHh
Q psy15714        178 SAKLNEGLDQVFIAAVRSAVK  198 (205)
Q Consensus       178 Sa~~~~~i~~~~~~i~~~~~~  198 (205)
                      ||++|.|++++|++|.+.+..
T Consensus       157 Sa~~g~gi~~l~~~l~~~i~~  177 (206)
T 2bov_A          157 SAKTRANVDKVFFDLMREIRA  177 (206)
T ss_dssp             CTTTCTTHHHHHHHHHHHHHH
T ss_pred             eCCCCCCHHHHHHHHHHHHHH
Confidence            999999999999999998866

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=100.00  E-value=7.1e-35  Score=208.32  Aligned_cols=168  Identities=33%  Similarity=0.481  Sum_probs=149.7

Q ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEE
Q psy15714         20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFL   99 (205)
Q Consensus        20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   99 (205)
                      ..+.+||+++|.+|+|||||++++.++.+...+.++.+..+...+.+++..+.+.+||+||++.++..+..+++.+|+++
T Consensus         3 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i   82 (181)
T 3t5g_A            3 QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI   82 (181)
T ss_dssp             CEEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEE
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEE
Confidence            35689999999999999999999999999888889888887778889999999999999999999999999999999999


Q ss_pred             EEEECCCcchHHHHHHHHHHHHhhhC--CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEc
Q psy15714        100 LCFSIGSTSSYENILSKWYPELKHHC--PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLEC  177 (205)
Q Consensus       100 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (205)
                      +|||++++.+++.+. .|+..+....  .++|+++|+||+|+...+            .+..++++.+++.++.. ++++
T Consensus        83 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~-~~~~  148 (181)
T 3t5g_A           83 LVYSVTSIKSFEVIK-VIHGKLLDMVGKVQIPIMLVGNKKDLHMER------------VISYEEGKALAESWNAA-FLES  148 (181)
T ss_dssp             EEEETTCHHHHHHHH-HHHHHHHHHC----CCEEEEEECTTCTTTC------------CSCHHHHHHHHHHTTCE-EEEC
T ss_pred             EEEECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECccchhcc------------eecHHHHHHHHHHhCCc-EEEE
Confidence            999999999999987 7887776654  589999999999997654            78889999999999986 9999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHhhcc
Q psy15714        178 SAKLNEGLDQVFIAAVRSAVKKQD  201 (205)
Q Consensus       178 Sa~~~~~i~~~~~~i~~~~~~~~~  201 (205)
                      ||+++.|++++|+++.+.+...+.
T Consensus       149 Sa~~~~~v~~l~~~l~~~~~~~~~  172 (181)
T 3t5g_A          149 SAKENQTAVDVFRRIILEAEKMDG  172 (181)
T ss_dssp             CTTSHHHHHHHHHHHHHHHHTC--
T ss_pred             ecCCCCCHHHHHHHHHHHHHHhcC
Confidence            999999999999999999887543

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=100.00  E-value=3e-35  Score=213.93  Aligned_cols=172  Identities=30%  Similarity=0.477  Sum_probs=144.3

Q ss_pred             cccccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCC
Q psy15714         16 KSKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNT   95 (205)
Q Consensus        16 ~~~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~   95 (205)
                      ......+.+||+|+|.+|+|||||+++|.++.+...+.++.+..+...+.+++..+.+.+||+||++.++..+..+++.+
T Consensus        17 q~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   96 (201)
T 3oes_A           17 QGMPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGV   96 (201)
T ss_dssp             ------CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTC
T ss_pred             CCCCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcC
Confidence            33455688999999999999999999999999988888888877766667777889999999999999999999999999


Q ss_pred             cEEEEEEECCCcchHHHHHHHHHHHHhhhC--CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCce
Q psy15714         96 DCFLLCFSIGSTSSYENILSKWYPELKHHC--PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAE  173 (205)
Q Consensus        96 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (205)
                      |++++|||++++.++..+. .|+..+....  .++|+++|+||+|+...+            .+..++++.+++..+.. 
T Consensus        97 d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~~------------~v~~~~~~~~~~~~~~~-  162 (201)
T 3oes_A           97 HGYVLVYSVTSLHSFQVIE-SLYQKLHEGHGKTRVPVVLVGNKADLSPER------------EVQAVEGKKLAESWGAT-  162 (201)
T ss_dssp             CEEEEEEETTCHHHHHHHH-HHHHHHHC-----CCCEEEEEECTTCGGGC------------CSCHHHHHHHHHHHTCE-
T ss_pred             CEEEEEEeCCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECccCcccc------------ccCHHHHHHHHHHhCCe-
Confidence            9999999999999999987 7888887654  589999999999997654            77888999999999986 


Q ss_pred             EEEcccCCCCCHHHHHHHHHHHHHhhcc
Q psy15714        174 YLECSAKLNEGLDQVFIAAVRSAVKKQD  201 (205)
Q Consensus       174 ~~~~Sa~~~~~i~~~~~~i~~~~~~~~~  201 (205)
                      ++++||++|.|++++|++|.+.+.....
T Consensus       163 ~~~~Sa~~~~~v~~l~~~l~~~i~~~~~  190 (201)
T 3oes_A          163 FMESSARENQLTQGIFTKVIQEIARVEN  190 (201)
T ss_dssp             EEECCTTCHHHHHHHHHHHHHHHHHC--
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHHhhhh
Confidence            9999999999999999999999887544

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=100.00  E-value=1.4e-35  Score=212.01  Aligned_cols=177  Identities=51%  Similarity=0.883  Sum_probs=135.2

Q ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEE
Q psy15714         20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFL   99 (205)
Q Consensus        20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   99 (205)
                      ..+.+||+++|++|+|||||++++..+.+...+.+|++..+...+.+++..+.+.+||+||++.++..+..+++++|+++
T Consensus         5 ~~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   84 (182)
T 3bwd_D            5 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFI   84 (182)
T ss_dssp             --CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEE
Confidence            45679999999999999999999999998888888887777656667788889999999999999999999999999999


Q ss_pred             EEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEccc
Q psy15714        100 LCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSA  179 (205)
Q Consensus       100 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  179 (205)
                      +|||++++.++..+...|+..+....+++|+++|+||+|+...+.....  ......++.+++..+++.++..+++++||
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa  162 (182)
T 3bwd_D           85 LAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFID--HPGAVPITTVQGEELKKLIGAPAYIECSS  162 (182)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHH--C--CCCCCHHHHHHHHHHHTCSEEEECCT
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccc--cccCCCCCHHHHHHHHHHcCCCEEEEEEC
Confidence            9999999999999876799999888779999999999999765432110  11223467888999999999766999999


Q ss_pred             CCCCCHHHHHHHHHHHHHh
Q psy15714        180 KLNEGLDQVFIAAVRSAVK  198 (205)
Q Consensus       180 ~~~~~i~~~~~~i~~~~~~  198 (205)
                      ++|+|++++|+++.+.+.+
T Consensus       163 ~~~~gi~~l~~~l~~~i~~  181 (182)
T 3bwd_D          163 KSQENVKGVFDAAIRVVLQ  181 (182)
T ss_dssp             TTCTTHHHHHHHHHHHHSC
T ss_pred             CCCCCHHHHHHHHHHHHhc
Confidence            9999999999999988753

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=4.2e-36  Score=216.74  Aligned_cols=184  Identities=26%  Similarity=0.464  Sum_probs=155.3

Q ss_pred             CccCCCCCccccccccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcc
Q psy15714          5 AQTTKGGDKDVKSKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQED   83 (205)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~   83 (205)
                      ++.+........+......+||+|+|.+|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~   84 (191)
T 3dz8_A            5 HHHSSGRENLYFQGNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQER   84 (191)
T ss_dssp             ------CCEEEETTEEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHH
T ss_pred             CCCCCchhccccccccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHH
Confidence            34444444444556677899999999999999999999999998888788776665 45667777788999999999999


Q ss_pred             cccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHH
Q psy15714         84 YERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQG  162 (205)
Q Consensus        84 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  162 (205)
                      ++..+..+++.+|++++|||++++.+++.+. .|+..+.... .++|+++|+||+|+...+            .+..+++
T Consensus        85 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~~~------------~~~~~~~  151 (191)
T 3dz8_A           85 YRTITTAYYRGAMGFILMYDITNEESFNAVQ-DWATQIKTYSWDNAQVILVGNKCDMEEER------------VVPTEKG  151 (191)
T ss_dssp             CHHHHHHHHTTCCEEEEEEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECTTCGGGC------------CSCHHHH
T ss_pred             HHHHHHHHHccCCEEEEEEECcCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECCCCcccc------------ccCHHHH
Confidence            9999999999999999999999999999987 7999998866 689999999999997654            6788889


Q ss_pred             HHHHHHcCCceEEEcccCCCCCHHHHHHHHHHHHHhhccc
Q psy15714        163 KKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQDK  202 (205)
Q Consensus       163 ~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~~  202 (205)
                      +.+++..+.. ++++||++|.|++++|+++.+.+.++..+
T Consensus       152 ~~~~~~~~~~-~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~  190 (191)
T 3dz8_A          152 QLLAEQLGFD-FFEASAKENISVRQAFERLVDAICDKMSD  190 (191)
T ss_dssp             HHHHHHHTCE-EEECBTTTTBSHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHcCCe-EEEEECCCCCCHHHHHHHHHHHHHHhccC
Confidence            9999999986 99999999999999999999999877554

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=100.00  E-value=2.1e-34  Score=205.51  Aligned_cols=169  Identities=26%  Similarity=0.511  Sum_probs=148.4

Q ss_pred             ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcE
Q psy15714         19 SVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDC   97 (205)
Q Consensus        19 ~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   97 (205)
                      .....+||+++|.+|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus         5 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   84 (181)
T 3tw8_B            5 DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHG   84 (181)
T ss_dssp             -CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSE
T ss_pred             ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCE
Confidence            345789999999999999999999999998877777776555 4667788999999999999999999999999999999


Q ss_pred             EEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEc
Q psy15714         98 FLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLEC  177 (205)
Q Consensus        98 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (205)
                      +++|||++++.++..+. .|+..+....+++|+++|+||+|+...+            .+..+++..++...+.. ++++
T Consensus        85 ~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~-~~~~  150 (181)
T 3tw8_B           85 VIVVYDVTSAESFVNVK-RWLHEINQNCDDVCRILVGNKNDDPERK------------VVETEDAYKFAGQMGIQ-LFET  150 (181)
T ss_dssp             EEEEEETTCHHHHHHHH-HHHHHHHHHCTTSEEEEEEECTTCGGGC------------CSCHHHHHHHHHHHTCC-EEEC
T ss_pred             EEEEEECCCHHHHHHHH-HHHHHHHHhCCCCCEEEEEECCCCchhc------------ccCHHHHHHHHHHcCCe-EEEE
Confidence            99999999999999987 8999998888899999999999987654            67778899999999886 9999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHhhcc
Q psy15714        178 SAKLNEGLDQVFIAAVRSAVKKQD  201 (205)
Q Consensus       178 Sa~~~~~i~~~~~~i~~~~~~~~~  201 (205)
                      ||++|.|++++|+++.+.+...++
T Consensus       151 Sa~~~~gi~~l~~~l~~~~~~~~~  174 (181)
T 3tw8_B          151 SAKENVNVEEMFNCITELVLRAKK  174 (181)
T ss_dssp             BTTTTBSHHHHHHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHHHHHhh
Confidence            999999999999999999887654

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=100.00  E-value=8.3e-35  Score=208.32  Aligned_cols=167  Identities=32%  Similarity=0.469  Sum_probs=149.7

Q ss_pred             cccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcE
Q psy15714         18 KSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDC   97 (205)
Q Consensus        18 ~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   97 (205)
                      ....+.+||+++|.+|+|||||++++.++.+...+.++.+..+.....+++..+.+.+||+||++.++..+..+++.+|+
T Consensus        13 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~   92 (183)
T 3kkq_A           13 SENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDG   92 (183)
T ss_dssp             -CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSE
T ss_pred             ccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCE
Confidence            34567899999999999999999999999998888888888877788899999999999999999999999999999999


Q ss_pred             EEEEEECCCcchHHHHHHHHHHHHhhhC--CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEE
Q psy15714         98 FLLCFSIGSTSSYENILSKWYPELKHHC--PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYL  175 (205)
Q Consensus        98 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (205)
                      +++|||++++.++..+. .|+..+....  .++|+++|+||+|+...+            .+..++++.+++.++.. ++
T Consensus        93 ~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~------------~v~~~~~~~~~~~~~~~-~~  158 (183)
T 3kkq_A           93 FLIVYSVTDKASFEHVD-RFHQLILRVKDRESFPMILVANKVDLMHLR------------KVTRDQGKEMATKYNIP-YI  158 (183)
T ss_dssp             EEEEEETTCHHHHHTHH-HHHHHHHHHHTSSCCCEEEEEECTTCSTTC------------CSCHHHHHHHHHHHTCC-EE
T ss_pred             EEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCcEEEEEECCCchhcc------------CcCHHHHHHHHHHhCCe-EE
Confidence            99999999999999987 7877775532  689999999999997754            78889999999999976 99


Q ss_pred             EcccC-CCCCHHHHHHHHHHHHHh
Q psy15714        176 ECSAK-LNEGLDQVFIAAVRSAVK  198 (205)
Q Consensus       176 ~~Sa~-~~~~i~~~~~~i~~~~~~  198 (205)
                      ++||+ ++.|++++|+++.+.+.+
T Consensus       159 ~~Sa~~~~~~v~~l~~~l~~~i~~  182 (183)
T 3kkq_A          159 ETSAKDPPLNVDKTFHDLVRVIRQ  182 (183)
T ss_dssp             EEBCSSSCBSHHHHHHHHHHHHHH
T ss_pred             EeccCCCCCCHHHHHHHHHHHHhh
Confidence            99999 999999999999998764

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=100.00  E-value=5.4e-35  Score=209.27  Aligned_cols=168  Identities=29%  Similarity=0.549  Sum_probs=119.7

Q ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEE
Q psy15714         20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCF   98 (205)
Q Consensus        20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   98 (205)
                      ....+||+++|++|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.++..+..+++.+|++
T Consensus         5 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   84 (183)
T 2fu5_C            5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   84 (183)
T ss_dssp             CSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEE
T ss_pred             cCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEE
Confidence            35679999999999999999999999988777777776555 45677889999999999999999999999999999999


Q ss_pred             EEEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEc
Q psy15714         99 LLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLEC  177 (205)
Q Consensus        99 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (205)
                      ++|||++++.++..+. .|+..+.... .++|+++|+||+|+...+            .++.++++.+++.++.. ++++
T Consensus        85 i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~~~------------~v~~~~~~~~~~~~~~~-~~~~  150 (183)
T 2fu5_C           85 MLVYDITNEKSFDNIR-NWIRNIEEHASADVEKMILGNKCDVNDKR------------QVSKERGEKLALDYGIK-FMET  150 (183)
T ss_dssp             EEEEETTCHHHHHHHH-HHHHHHHHHSCTTCEEEEEEEC--CCSCC------------CSCHHHHHHHHHHHTCE-EEEC
T ss_pred             EEEEECcCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECccCCccC------------cCCHHHHHHHHHHcCCe-EEEE
Confidence            9999999999999987 7988887764 689999999999997654            67788899999998876 9999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHhhcc
Q psy15714        178 SAKLNEGLDQVFIAAVRSAVKKQD  201 (205)
Q Consensus       178 Sa~~~~~i~~~~~~i~~~~~~~~~  201 (205)
                      ||++|.|++++|.++.+.+..+.+
T Consensus       151 Sa~~~~~i~~l~~~l~~~i~~~~~  174 (183)
T 2fu5_C          151 SAKANINVENAFFTLARDIKAKMD  174 (183)
T ss_dssp             CC---CCHHHHHHHHHHHHHHHHH
T ss_pred             eCCCCCCHHHHHHHHHHHHHHHhh
Confidence            999999999999999999877543

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=100.00  E-value=1.1e-34  Score=207.99  Aligned_cols=169  Identities=31%  Similarity=0.493  Sum_probs=148.7

Q ss_pred             ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEE
Q psy15714         19 SVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCF   98 (205)
Q Consensus        19 ~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   98 (205)
                      .....+||+++|.+|+|||||++++.++.+...+.++....+...+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus        14 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   93 (187)
T 2a9k_A           14 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF   93 (187)
T ss_dssp             ---CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEE
Confidence            34678999999999999999999999999988888888877777788899999999999999999999988999999999


Q ss_pred             EEEEECCCcchHHHHHHHHHHHHhhhC--CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEE
Q psy15714         99 LLCFSIGSTSSYENILSKWYPELKHHC--PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLE  176 (205)
Q Consensus        99 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (205)
                      ++|||++++.++..+. .|+..+....  .++|+++|+||+|+...+            .+..++++.+++.++.. +++
T Consensus        94 i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~-~~~  159 (187)
T 2a9k_A           94 LCVFSITEMESFAATA-DFREQILRVKEDENVPFLLVGNKSDLEDKR------------QVSVEEAKNRAEQWNVN-YVE  159 (187)
T ss_dssp             EEEEETTCHHHHHHHH-HHHHHHHHHHCCTTCCEEEEEECGGGGGGC------------CSCHHHHHHHHHHTTCE-EEE
T ss_pred             EEEEECcCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECccccccC------------ccCHHHHHHHHHHcCCe-EEE
Confidence            9999999999999987 7887777655  389999999999997654            67788889999988875 999


Q ss_pred             cccCCCCCHHHHHHHHHHHHHhhcc
Q psy15714        177 CSAKLNEGLDQVFIAAVRSAVKKQD  201 (205)
Q Consensus       177 ~Sa~~~~~i~~~~~~i~~~~~~~~~  201 (205)
                      +||+++.|++++|++|.+.+...+.
T Consensus       160 ~Sa~~~~gi~~l~~~l~~~i~~~~~  184 (187)
T 2a9k_A          160 TSAKTRANVDKVFFDLMREIRARKM  184 (187)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred             eCCCCCCCHHHHHHHHHHHHHHhhc
Confidence            9999999999999999999876543

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=100.00  E-value=2.7e-34  Score=203.05  Aligned_cols=165  Identities=28%  Similarity=0.549  Sum_probs=138.9

Q ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEE
Q psy15714         20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCF   98 (205)
Q Consensus        20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   98 (205)
                      ..+.+||+++|++|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus         3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~   82 (170)
T 1z08_A            3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA   82 (170)
T ss_dssp             -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred             CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence            45679999999999999999999999998877778777665 35677788889999999999999999999999999999


Q ss_pred             EEEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEc
Q psy15714         99 LLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLEC  177 (205)
Q Consensus        99 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (205)
                      ++|||++++.++..+. .|+..+.... .++|+++|+||+|+...+            .++.++++.+++..+.. ++++
T Consensus        83 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~-~~~~  148 (170)
T 1z08_A           83 ILVYDITDEDSFQKVK-NWVKELRKMLGNEICLCIVGNKIDLEKER------------HVSIQEAESYAESVGAK-HYHT  148 (170)
T ss_dssp             EEEEETTCHHHHHHHH-HHHHHHHHHHGGGSEEEEEEECGGGGGGC------------CSCHHHHHHHHHHTTCE-EEEE
T ss_pred             EEEEECcCHHHHHHHH-HHHHHHHHhcCCCCeEEEEEECccccccc------------ccCHHHHHHHHHHcCCe-EEEe
Confidence            9999999999999987 7888877654 589999999999997654            67788899999998876 9999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHh
Q psy15714        178 SAKLNEGLDQVFIAAVRSAVK  198 (205)
Q Consensus       178 Sa~~~~~i~~~~~~i~~~~~~  198 (205)
                      ||++|.|++++|+++.+.+.+
T Consensus       149 Sa~~~~gi~~l~~~l~~~~~~  169 (170)
T 1z08_A          149 SAKQNKGIEELFLDLCKRMIE  169 (170)
T ss_dssp             BTTTTBSHHHHHHHHHHHHHC
T ss_pred             cCCCCCCHHHHHHHHHHHHhh
Confidence            999999999999999988753

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=100.00  E-value=2.4e-34  Score=207.69  Aligned_cols=174  Identities=27%  Similarity=0.431  Sum_probs=150.0

Q ss_pred             ccccccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcC
Q psy15714         15 VKSKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYP   93 (205)
Q Consensus        15 ~~~~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~   93 (205)
                      .......+.+||+|+|.+|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.++..+..+++
T Consensus        17 ~~~~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~   96 (193)
T 2oil_A           17 RGSEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYR   96 (193)
T ss_dssp             ---CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHT
T ss_pred             ccccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhc
Confidence            3445667889999999999999999999999998877777776655 456778888999999999999999999889999


Q ss_pred             CCcEEEEEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCc
Q psy15714         94 NTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAA  172 (205)
Q Consensus        94 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (205)
                      .+|++|+|||++++.++..+. .|+..+.... .++|+++|+||+|+...+            .+..++++.+++..++.
T Consensus        97 ~~d~vi~v~D~~~~~s~~~~~-~~l~~i~~~~~~~~piilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~  163 (193)
T 2oil_A           97 GAVGALLVFDLTKHQTYAVVE-RWLKELYDHAEATIVVMLVGNKSDLSQAR------------EVPTEEARMFAENNGLL  163 (193)
T ss_dssp             TCCEEEEEEETTCHHHHHTHH-HHHHHHHTTSCTTCEEEEEEECGGGGGGC------------CSCHHHHHHHHHHTTCE
T ss_pred             cCCEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCeEEEEEECCCccccc------------ccCHHHHHHHHHHcCCE
Confidence            999999999999999998887 7888887655 689999999999997654            56778889999888875


Q ss_pred             eEEEcccCCCCCHHHHHHHHHHHHHhhccc
Q psy15714        173 EYLECSAKLNEGLDQVFIAAVRSAVKKQDK  202 (205)
Q Consensus       173 ~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~~  202 (205)
                       ++++||++|.|++++|++|.+.+.++.++
T Consensus       164 -~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~  192 (193)
T 2oil_A          164 -FLETSALDSTNVELAFETVLKEIFAKVSK  192 (193)
T ss_dssp             -EEEECTTTCTTHHHHHHHHHHHHHHHHHT
T ss_pred             -EEEEeCCCCCCHHHHHHHHHHHHHHHhhc
Confidence             99999999999999999999998876543

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=100.00  E-value=5.6e-34  Score=204.40  Aligned_cols=169  Identities=27%  Similarity=0.475  Sum_probs=149.0

Q ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEE
Q psy15714         20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCF   98 (205)
Q Consensus        20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   98 (205)
                      ..+.+||+++|++|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.++..+..+++.+|++
T Consensus         7 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   86 (186)
T 2bme_A            7 YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGA   86 (186)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEE
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEE
Confidence            46789999999999999999999999998887777776555 45677888889999999999999999999999999999


Q ss_pred             EEEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEc
Q psy15714         99 LLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLEC  177 (205)
Q Consensus        99 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (205)
                      ++|||++++.++..+. .|+..+.... .++|+++|+||+|+...+            .+..+++..+++..+.. ++++
T Consensus        87 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~-~~~~  152 (186)
T 2bme_A           87 LLVYDITSRETYNALT-NWLTDARMLASQNIVIILCGNKKDLDADR------------EVTFLEASRFAQENELM-FLET  152 (186)
T ss_dssp             EEEEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECGGGGGGC------------CSCHHHHHHHHHHTTCE-EEEC
T ss_pred             EEEEECcCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECccccccc------------ccCHHHHHHHHHHcCCE-EEEe
Confidence            9999999999999987 7888877655 689999999999997543            67778888999888876 9999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHhhccc
Q psy15714        178 SAKLNEGLDQVFIAAVRSAVKKQDK  202 (205)
Q Consensus       178 Sa~~~~~i~~~~~~i~~~~~~~~~~  202 (205)
                      ||++|+|++++|+++.+.+.++.+.
T Consensus       153 Sa~~~~gi~~l~~~l~~~~~~~~~~  177 (186)
T 2bme_A          153 SALTGENVEEAFVQCARKILNKIES  177 (186)
T ss_dssp             CTTTCTTHHHHHHHHHHHHHHHHHS
T ss_pred             cCCCCCCHHHHHHHHHHHHHHHhhh
Confidence            9999999999999999998876554

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=100.00  E-value=2.7e-34  Score=204.56  Aligned_cols=166  Identities=30%  Similarity=0.511  Sum_probs=146.6

Q ss_pred             ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcE
Q psy15714         19 SVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDC   97 (205)
Q Consensus        19 ~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   97 (205)
                      .....+||+++|.+|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.++..+..+++.+|+
T Consensus        11 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   90 (179)
T 1z0f_A           11 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG   90 (179)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSE
T ss_pred             ccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCE
Confidence            456789999999999999999999999998877778777665 4567788889999999999999999998899999999


Q ss_pred             EEEEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEE
Q psy15714         98 FLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLE  176 (205)
Q Consensus        98 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (205)
                      +++|||++++.++..+. .|+..+.... .++|+++|+||+|+...+            .+..++++.+++..+.. +++
T Consensus        91 ~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~-~~~  156 (179)
T 1z0f_A           91 ALMVYDITRRSTYNHLS-SWLTDARNLTNPNTVIILIGNKADLEAQR------------DVTYEEAKQFAEENGLL-FLE  156 (179)
T ss_dssp             EEEEEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECTTCGGGC------------CSCHHHHHHHHHHTTCE-EEE
T ss_pred             EEEEEeCcCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECccccccc------------ccCHHHHHHHHHHcCCE-EEE
Confidence            99999999999999887 8888887766 689999999999997654            67778899999988876 999


Q ss_pred             cccCCCCCHHHHHHHHHHHHHh
Q psy15714        177 CSAKLNEGLDQVFIAAVRSAVK  198 (205)
Q Consensus       177 ~Sa~~~~~i~~~~~~i~~~~~~  198 (205)
                      +||++++|++++|+++.+.+.+
T Consensus       157 ~Sa~~~~gi~~l~~~l~~~i~~  178 (179)
T 1z0f_A          157 ASAKTGENVEDAFLEAAKKIYQ  178 (179)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHC-
T ss_pred             EeCCCCCCHHHHHHHHHHHHhh
Confidence            9999999999999999988754

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=100.00  E-value=1.8e-34  Score=209.70  Aligned_cols=174  Identities=28%  Similarity=0.484  Sum_probs=140.1

Q ss_pred             cccccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCC
Q psy15714         16 KSKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPN   94 (205)
Q Consensus        16 ~~~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~   94 (205)
                      ..+...+.+||+|+|.+|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.
T Consensus        18 ~~~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~   97 (200)
T 2o52_A           18 GSIWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRG   97 (200)
T ss_dssp             ----CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTT
T ss_pred             cccccCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhcc
Confidence            344567889999999999999999999999998877777776555 4567788888999999999999999999999999


Q ss_pred             CcEEEEEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCce
Q psy15714         95 TDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAE  173 (205)
Q Consensus        95 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (205)
                      +|++|+|||++++.++..+. .|+..+.... .++|+++|+||+|+...+            .++.+++..+++..+.. 
T Consensus        98 ~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~------------~v~~~~~~~~~~~~~~~-  163 (200)
T 2o52_A           98 AAGALLVYDITSRETYNSLA-AWLTDARTLASPNIVVILCGNKKDLDPER------------EVTFLEASRFAQENELM-  163 (200)
T ss_dssp             CSEEEEEEETTCHHHHHTHH-HHHHHHHHHTCTTCEEEEEEECGGGGGGC------------CSCHHHHHHHHHHTTCE-
T ss_pred             CCEEEEEEECcCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECCCccccc------------ccCHHHHHHHHHHcCCE-
Confidence            99999999999999999987 7888887655 689999999999997644            67778888999888876 


Q ss_pred             EEEcccCCCCCHHHHHHHHHHHHHhhcccC
Q psy15714        174 YLECSAKLNEGLDQVFIAAVRSAVKKQDKS  203 (205)
Q Consensus       174 ~~~~Sa~~~~~i~~~~~~i~~~~~~~~~~~  203 (205)
                      ++++||++|.|++++|+++.+.+..+.+..
T Consensus       164 ~~~~SA~~g~gi~~l~~~l~~~i~~~~~~~  193 (200)
T 2o52_A          164 FLETSALTGENVEEAFLKCARTILNKIDSG  193 (200)
T ss_dssp             EEEECTTTCTTHHHHHHHHHHHHHHHHHTT
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHHHHHhcC
Confidence            999999999999999999999988765543

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=100.00  E-value=5e-34  Score=203.72  Aligned_cols=169  Identities=26%  Similarity=0.460  Sum_probs=145.8

Q ss_pred             ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcE
Q psy15714         19 SVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDC   97 (205)
Q Consensus        19 ~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   97 (205)
                      .....+||+++|.+|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.++..+..+++.+|+
T Consensus         8 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   87 (181)
T 2efe_B            8 NKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA   87 (181)
T ss_dssp             --CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSE
T ss_pred             CCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCE
Confidence            456779999999999999999999999998887777777665 4567788888999999999999999999999999999


Q ss_pred             EEEEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEE
Q psy15714         98 FLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLE  176 (205)
Q Consensus        98 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (205)
                      +++|||++++.+++.+. .|+..+.... +++|+++|+||+|+...+            .+..++++.+++..+.. +++
T Consensus        88 ~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~-~~~  153 (181)
T 2efe_B           88 AIIVFDVTNQASFERAK-KWVQELQAQGNPNMVMALAGNKSDLLDAR------------KVTAEDAQTYAQENGLF-FME  153 (181)
T ss_dssp             EEEEEETTCHHHHHHHH-HHHHHHHHHSCTTCEEEEEEECTTCTTTC------------CSCHHHHHHHHHHTTCE-EEE
T ss_pred             EEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECCcccccc------------cCCHHHHHHHHHHcCCE-EEE
Confidence            99999999999999987 7888887765 689999999999997654            67788899999888876 999


Q ss_pred             cccCCCCCHHHHHHHHHHHHHhhcc
Q psy15714        177 CSAKLNEGLDQVFIAAVRSAVKKQD  201 (205)
Q Consensus       177 ~Sa~~~~~i~~~~~~i~~~~~~~~~  201 (205)
                      +||++|+|++++|++|.+.+.....
T Consensus       154 ~Sa~~g~gi~~l~~~l~~~~~~~~~  178 (181)
T 2efe_B          154 TSAKTATNVKEIFYEIARRLPRVQP  178 (181)
T ss_dssp             CCSSSCTTHHHHHHHHHHTCC----
T ss_pred             EECCCCCCHHHHHHHHHHHHHhcCC
Confidence            9999999999999999988766543

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=100.00  E-value=1.3e-34  Score=204.06  Aligned_cols=163  Identities=30%  Similarity=0.521  Sum_probs=144.1

Q ss_pred             eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEE
Q psy15714         22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLC  101 (205)
Q Consensus        22 ~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v  101 (205)
                      +.+||+++|.+|+|||||++++.++.+...+.++.+..+...+.+++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus         2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   81 (167)
T 1c1y_A            2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV   81 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence            46899999999999999999999999988888888877777777888889999999999999999988899999999999


Q ss_pred             EECCCcchHHHHHHHHHHHHhhhC--CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEccc
Q psy15714        102 FSIGSTSSYENILSKWYPELKHHC--PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSA  179 (205)
Q Consensus       102 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  179 (205)
                      ||++++.++..+. .|+..+....  .++|+++|+||+|+...+            .++.++++.+++.++..+++++||
T Consensus        82 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~~~~~~Sa  148 (167)
T 1c1y_A           82 YSITAQSTFNDLQ-DLREQILRVKDTEDVPMILVGNKCDLEDER------------VVGKEQGQNLARQWCNCAFLESSA  148 (167)
T ss_dssp             EETTCHHHHHTHH-HHHHHHHHHHCCSCCCEEEEEECTTCGGGC------------CSCHHHHHHHHHHTTSCEEEECBT
T ss_pred             EECCCHHHHHHHH-HHHHHHHHhhCcCCCcEEEEEECccccccc------------cCCHHHHHHHHHHccCCcEEEecC
Confidence            9999999999987 6777776542  689999999999997654            677888899998885555999999


Q ss_pred             CCCCCHHHHHHHHHHHHH
Q psy15714        180 KLNEGLDQVFIAAVRSAV  197 (205)
Q Consensus       180 ~~~~~i~~~~~~i~~~~~  197 (205)
                      ++|.|++++|+++.+.+.
T Consensus       149 ~~~~gi~~l~~~l~~~i~  166 (167)
T 1c1y_A          149 KSKINVNEIFYDLVRQIN  166 (167)
T ss_dssp             TTTBSHHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHh
Confidence            999999999999998763

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=100.00  E-value=3.4e-34  Score=204.43  Aligned_cols=169  Identities=33%  Similarity=0.522  Sum_probs=149.1

Q ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEE
Q psy15714         20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFL   99 (205)
Q Consensus        20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   99 (205)
                      ..+.+||+++|.+|+|||||++++.++.+...+.++.+..+...+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus         6 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i   85 (181)
T 2fn4_A            6 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFL   85 (181)
T ss_dssp             SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEE
Confidence            45679999999999999999999999999888888888777777888998999999999999999999888999999999


Q ss_pred             EEEECCCcchHHHHHHHHHHHH-hhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEc
Q psy15714        100 LCFSIGSTSSYENILSKWYPEL-KHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLEC  177 (205)
Q Consensus       100 ~v~d~~~~~s~~~~~~~~~~~~-~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (205)
                      +|||++++.++..+. .|+..+ .... .++|+++|+||+|+...+            .+..++++.++...+.. ++++
T Consensus        86 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~------------~v~~~~~~~~~~~~~~~-~~~~  151 (181)
T 2fn4_A           86 LVFAINDRQSFNEVG-KLFTQILRVKDRDDFPVVLVGNKADLESQR------------QVPRSEASAFGASHHVA-YFEA  151 (181)
T ss_dssp             EEEETTCHHHHHHHH-HHHHHHHHHHTSSCCCEEEEEECGGGGGGC------------CSCHHHHHHHHHHTTCE-EEEC
T ss_pred             EEEeCCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECccccccc------------ccCHHHHHHHHHHcCCe-EEEe
Confidence            999999999999987 677666 4333 689999999999997654            67788888999888876 9999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHhhccc
Q psy15714        178 SAKLNEGLDQVFIAAVRSAVKKQDK  202 (205)
Q Consensus       178 Sa~~~~~i~~~~~~i~~~~~~~~~~  202 (205)
                      ||++|.|++++|++|.+.+...++.
T Consensus       152 Sa~~~~gv~~l~~~l~~~~~~~~~~  176 (181)
T 2fn4_A          152 SAKLRLNVDEAFEQLVRAVRKYQEQ  176 (181)
T ss_dssp             BTTTTBSHHHHHHHHHHHHHHHTTC
T ss_pred             cCCCCCCHHHHHHHHHHHHHHhhcc
Confidence            9999999999999999998876554

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=100.00  E-value=1.3e-33  Score=205.95  Aligned_cols=166  Identities=25%  Similarity=0.529  Sum_probs=148.2

Q ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEE
Q psy15714         20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCF   98 (205)
Q Consensus        20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   98 (205)
                      ....+||+|+|++|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.++..+..+++.+|++
T Consensus         5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~v   84 (206)
T 2bcg_Y            5 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGI   84 (206)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEE
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEE
Confidence            45679999999999999999999999999888888877666 45677889899999999999999999999999999999


Q ss_pred             EEEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEc
Q psy15714         99 LLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLEC  177 (205)
Q Consensus        99 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (205)
                      ++|||++++.++..+. .|+..+.... .++|+++|+||+|+...+            .+..+++..+++..+.. ++++
T Consensus        85 ilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~-~~~~  150 (206)
T 2bcg_Y           85 IIVYDVTDQESFNGVK-MWLQEIDRYATSTVLKLLVGNKCDLKDKR------------VVEYDVAKEFADANKMP-FLET  150 (206)
T ss_dssp             EEEEETTCHHHHHHHH-HHHHHHHHHSCTTCEEEEEEECTTCTTTC------------CSCHHHHHHHHHHTTCC-EEEC
T ss_pred             EEEEECcCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECCCCcccc------------ccCHHHHHHHHHHcCCe-EEEE
Confidence            9999999999999987 7988887765 689999999999997654            67778888999888876 9999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHhh
Q psy15714        178 SAKLNEGLDQVFIAAVRSAVKK  199 (205)
Q Consensus       178 Sa~~~~~i~~~~~~i~~~~~~~  199 (205)
                      ||++|.|++++|.++.+.+...
T Consensus       151 Sa~~g~gi~~l~~~l~~~i~~~  172 (206)
T 2bcg_Y          151 SALDSTNVEDAFLTMARQIKES  172 (206)
T ss_dssp             CTTTCTTHHHHHHHHHHHHHHH
T ss_pred             eCCCCCCHHHHHHHHHHHHHHH
Confidence            9999999999999999988754

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=100.00  E-value=2.1e-34  Score=205.29  Aligned_cols=165  Identities=20%  Similarity=0.334  Sum_probs=139.0

Q ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEE
Q psy15714         20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFL   99 (205)
Q Consensus        20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   99 (205)
                      ..+.+||+++|++|+|||||+++|.++.+.. +.+|.+..+...+.+++..+.+.+||+||++.     ..+++++|+++
T Consensus         4 ~~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~i   77 (178)
T 2iwr_A            4 SIPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVI   77 (178)
T ss_dssp             CCCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEE
Confidence            4567999999999999999999999999876 67888877777788899999999999999976     34678899999


Q ss_pred             EEEECCCcchHHHHHHHHHHHHhhh---C-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEE
Q psy15714        100 LCFSIGSTSSYENILSKWYPELKHH---C-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYL  175 (205)
Q Consensus       100 ~v~d~~~~~s~~~~~~~~~~~~~~~---~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (205)
                      +|||++++.++..+. .|+..+...   . +++|+++|+||+|+.....          +.++.++++.+++..+..+++
T Consensus        78 lv~D~~~~~s~~~~~-~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~----------~~v~~~~~~~~~~~~~~~~~~  146 (178)
T 2iwr_A           78 FVFSLEDENSFQAVS-RLHGQLSSLRGEGRGGLALALVGTQDRISASSP----------RVVGDARARALXADMKRCSYY  146 (178)
T ss_dssp             EEEETTCHHHHHHHH-HHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBC----------CCSCHHHHHHHHHHHSSEEEE
T ss_pred             EEEECcCHHHHHHHH-HHHHHHHHHHhcCCCCCCEEEEEECcccccccc----------CcCCHHHHHHHHHhhcCCeEE
Confidence            999999999999987 666555443   2 5899999999999953211          267888899998887555699


Q ss_pred             EcccCCCCCHHHHHHHHHHHHHhhcc
Q psy15714        176 ECSAKLNEGLDQVFIAAVRSAVKKQD  201 (205)
Q Consensus       176 ~~Sa~~~~~i~~~~~~i~~~~~~~~~  201 (205)
                      ++||++|+|++++|+++.+.+.+.++
T Consensus       147 ~~Sa~~~~~i~~lf~~l~~~~~~~~~  172 (178)
T 2iwr_A          147 ETXATYGLNVDRVFQEVAQKVVTLRK  172 (178)
T ss_dssp             EEBTTTTBTHHHHHHHHHHHHHHHHH
T ss_pred             EEeccccCCHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999877644

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=100.00  E-value=2.7e-34  Score=202.39  Aligned_cols=163  Identities=32%  Similarity=0.512  Sum_probs=143.1

Q ss_pred             eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEE
Q psy15714         22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLC  101 (205)
Q Consensus        22 ~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v  101 (205)
                      +.+||+++|.+|+|||||++++.++.+...+.++.+..+...+.+++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus         3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   82 (168)
T 1u8z_A            3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV   82 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEE
Confidence            56899999999999999999999999888888888777777778899999999999999999999988999999999999


Q ss_pred             EECCCcchHHHHHHHHHHHHhhhC--CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEccc
Q psy15714        102 FSIGSTSSYENILSKWYPELKHHC--PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSA  179 (205)
Q Consensus       102 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  179 (205)
                      ||++++.++..+. .|+..+....  .++|+++|+||+|+...+            .+..++++.+++..+.. ++++||
T Consensus        83 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~-~~~~Sa  148 (168)
T 1u8z_A           83 FSITEMESFAATA-DFREQILRVKEDENVPFLLVGNKSDLEDKR------------QVSVEEAKNRADQWNVN-YVETSA  148 (168)
T ss_dssp             EETTCHHHHHHHH-HHHHHHHHHHCCTTSCEEEEEECGGGGGGC------------CSCHHHHHHHHHHHTCE-EEECCT
T ss_pred             EECCCHHHHHHHH-HHHHHHHHhcCCCCCcEEEEEECccccccC------------ccCHHHHHHHHHHcCCe-EEEeCC
Confidence            9999999999987 7888777655  489999999999997654            67788889999888876 999999


Q ss_pred             CCCCCHHHHHHHHHHHHHh
Q psy15714        180 KLNEGLDQVFIAAVRSAVK  198 (205)
Q Consensus       180 ~~~~~i~~~~~~i~~~~~~  198 (205)
                      ++|.|++++|+++.+.+.+
T Consensus       149 ~~~~gi~~l~~~l~~~i~~  167 (168)
T 1u8z_A          149 KTRANVDKVFFDLMREIRA  167 (168)
T ss_dssp             TTCTTHHHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHh
Confidence            9999999999999998764

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=100.00  E-value=1.4e-33  Score=203.22  Aligned_cols=173  Identities=31%  Similarity=0.490  Sum_probs=137.6

Q ss_pred             ccccccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCC
Q psy15714         15 VKSKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPN   94 (205)
Q Consensus        15 ~~~~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~   94 (205)
                      ....+..+.+||+++|.+|+|||||++++.++.+...+.++....+...+.+++..+.+.+||+||++.+...+..+++.
T Consensus        13 ~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~   92 (190)
T 3con_A           13 NLYFQGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT   92 (190)
T ss_dssp             ------CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTT
T ss_pred             cccccccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCc
Confidence            33445578899999999999999999999999988887888777776778888999999999999999999999999999


Q ss_pred             CcEEEEEEECCCcchHHHHHHHHHHHHhhhC--CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCc
Q psy15714         95 TDCFLLCFSIGSTSSYENILSKWYPELKHHC--PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAA  172 (205)
Q Consensus        95 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (205)
                      +|++++|||+++..++..+. .|+..+....  .++|+++|+||+|+...             .+..++++.+++..+..
T Consensus        93 ~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~-------------~~~~~~~~~~~~~~~~~  158 (190)
T 3con_A           93 GEGFLCVFAINNSKSFADIN-LYREQIKRVKDSDDVPMVLVGNKCDLPTR-------------TVDTKQAHELAKSYGIP  158 (190)
T ss_dssp             CSEEEEEEETTCHHHHHHHH-HHHHHHHHHHTCSCCCEEEEEECTTCSCC-------------CSCHHHHHHHHHHHTCC
T ss_pred             CCEEEEEEECcCHHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECCcCCcc-------------cCCHHHHHHHHHHcCCe
Confidence            99999999999999999986 7888887654  48999999999999763             56678888999988886


Q ss_pred             eEEEcccCCCCCHHHHHHHHHHHHHhhccc
Q psy15714        173 EYLECSAKLNEGLDQVFIAAVRSAVKKQDK  202 (205)
Q Consensus       173 ~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~~  202 (205)
                       ++++||+++.|++++|++|.+.+.+.+.+
T Consensus       159 -~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~  187 (190)
T 3con_A          159 -FIETSAKTRQGVEDAFYTLVREIRQYRMK  187 (190)
T ss_dssp             -EEECCTTTCTTHHHHHHHHHHHHHHHC--
T ss_pred             -EEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Confidence             99999999999999999999998776543

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=100.00  E-value=4.9e-34  Score=201.25  Aligned_cols=164  Identities=25%  Similarity=0.484  Sum_probs=145.3

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEE
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFL   99 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   99 (205)
                      .+.+||+++|++|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.++..+..+++.+|+++
T Consensus         3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   82 (168)
T 1z2a_A            3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV   82 (168)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence            4679999999999999999999999998888888877655 566778888899999999999999999999999999999


Q ss_pred             EEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEccc
Q psy15714        100 LCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSA  179 (205)
Q Consensus       100 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  179 (205)
                      +|||++++.+++.+. .|+..+.....+.|+++|+||+|+...+            .+..++++.+++..+.. ++++||
T Consensus        83 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~piilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~-~~~~Sa  148 (168)
T 1z2a_A           83 LVFSTTDRESFEAIS-SWREKVVAEVGDIPTALVQNKIDLLDDS------------CIKNEEAEGLAKRLKLR-FYRTSV  148 (168)
T ss_dssp             EEEETTCHHHHHTHH-HHHHHHHHHHCSCCEEEEEECGGGGGGC------------SSCHHHHHHHHHHHTCE-EEECBT
T ss_pred             EEEECcCHHHHHHHH-HHHHHHHHhCCCCCEEEEEECcccCccc------------ccCHHHHHHHHHHcCCe-EEEEec
Confidence            999999999999887 7888887666789999999999997654            66778888999888885 999999


Q ss_pred             CCCCCHHHHHHHHHHHHHh
Q psy15714        180 KLNEGLDQVFIAAVRSAVK  198 (205)
Q Consensus       180 ~~~~~i~~~~~~i~~~~~~  198 (205)
                      +++.|++++|+++.+.+.+
T Consensus       149 ~~~~~i~~l~~~l~~~~~~  167 (168)
T 1z2a_A          149 KEDLNVSEVFKYLAEKHLQ  167 (168)
T ss_dssp             TTTBSSHHHHHHHHHHHHC
T ss_pred             CCCCCHHHHHHHHHHHHhh
Confidence            9999999999999988764

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=100.00  E-value=9.1e-34  Score=206.23  Aligned_cols=167  Identities=28%  Similarity=0.511  Sum_probs=148.2

Q ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEE
Q psy15714         20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCF   98 (205)
Q Consensus        20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   98 (205)
                      ....+||+|+|.+|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.++..+..+++.+|++
T Consensus         5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   84 (203)
T 1zbd_A            5 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGF   84 (203)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEE
T ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEE
Confidence            45679999999999999999999999998877778776655 45677788899999999999999999999999999999


Q ss_pred             EEEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEc
Q psy15714         99 LLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLEC  177 (205)
Q Consensus        99 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (205)
                      |+|||++++.++..+. .|+..+.... .++|+++|+||+|+...+            .+..++++.+++.++.. ++++
T Consensus        85 i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~-~~~~  150 (203)
T 1zbd_A           85 ILMYDITNEESFNAVQ-DWSTQIKTYSWDNAQVLLVGNKCDMEDER------------VVSSERGRQLADHLGFE-FFEA  150 (203)
T ss_dssp             EEEEETTCHHHHHHHH-HHHHHHHHHSCSSCEEEEEEECTTCTTSC------------CSCHHHHHHHHHHHTCE-EEEC
T ss_pred             EEEEECcCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECcccCccc------------ccCHHHHHHHHHHCCCe-EEEE
Confidence            9999999999999987 7988888766 689999999999997654            67788889999998875 9999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHhhc
Q psy15714        178 SAKLNEGLDQVFIAAVRSAVKKQ  200 (205)
Q Consensus       178 Sa~~~~~i~~~~~~i~~~~~~~~  200 (205)
                      ||++|.|++++|++|.+.+.++.
T Consensus       151 Sa~~~~gi~~l~~~l~~~i~~~~  173 (203)
T 1zbd_A          151 SAKDNINVKQTFERLVDVICEKM  173 (203)
T ss_dssp             BTTTTBSSHHHHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999887653

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=100.00  E-value=2.4e-34  Score=207.72  Aligned_cols=169  Identities=27%  Similarity=0.495  Sum_probs=140.1

Q ss_pred             cccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCc
Q psy15714         18 KSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTD   96 (205)
Q Consensus        18 ~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   96 (205)
                      ......+||+++|.+|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|
T Consensus        21 ~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d  100 (192)
T 2il1_A           21 RPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAK  100 (192)
T ss_dssp             -CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCS
T ss_pred             cccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCC
Confidence            3456789999999999999999999999998777777776555 456778888899999999999999998888999999


Q ss_pred             EEEEEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEE
Q psy15714         97 CFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYL  175 (205)
Q Consensus        97 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (205)
                      ++++|||++++.+++.+. .|+..+.... .++|+++|+||+|+...+            .+..++++.+++.....+++
T Consensus       101 ~iilV~D~~~~~s~~~~~-~~~~~i~~~~~~~~piilV~NK~Dl~~~~------------~v~~~~~~~~~~~~~~~~~~  167 (192)
T 2il1_A          101 GIILVYDITKKETFDDLP-KWMKMIDKYASEDAELLLVGNKLDCETDR------------EITRQQGEKFAQQITGMRFC  167 (192)
T ss_dssp             EEEEEEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECGGGGGGC------------CSCHHHHHHHHHTSTTCEEE
T ss_pred             EEEEEEECcCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECccccccc------------ccCHHHHHHHHHhcCCCeEE
Confidence            999999999999999986 8988888766 589999999999997654            67778888898886445599


Q ss_pred             EcccCCCCCHHHHHHHHHHHHHhh
Q psy15714        176 ECSAKLNEGLDQVFIAAVRSAVKK  199 (205)
Q Consensus       176 ~~Sa~~~~~i~~~~~~i~~~~~~~  199 (205)
                      ++||++|+|++++|++|.+.+.++
T Consensus       168 ~~SA~~g~gi~~l~~~l~~~i~~~  191 (192)
T 2il1_A          168 EASAKDNFNVDEIFLKLVDDILKK  191 (192)
T ss_dssp             ECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred             EEeCCCCCCHHHHHHHHHHHHHHh
Confidence            999999999999999999988653

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=100.00  E-value=4.8e-34  Score=201.58  Aligned_cols=163  Identities=26%  Similarity=0.498  Sum_probs=143.7

Q ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEE
Q psy15714         20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCF   98 (205)
Q Consensus        20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   98 (205)
                      ..+.+||+++|.+|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.++..+..+++.+|++
T Consensus         3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~   82 (170)
T 1r2q_A            3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA   82 (170)
T ss_dssp             EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence            45789999999999999999999999998877777776665 45677888899999999999999999988999999999


Q ss_pred             EEEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEc
Q psy15714         99 LLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLEC  177 (205)
Q Consensus        99 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (205)
                      ++|||++++.++..+. .|+..+.... +++|+++|+||+|+...+            .+..++++.+++..+.. ++++
T Consensus        83 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~iilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~-~~~~  148 (170)
T 1r2q_A           83 IVVYDITNEESFARAK-NWVKELQRQASPNIVIALSGNKADLANKR------------AVDFQEAQSYADDNSLL-FMET  148 (170)
T ss_dssp             EEEEETTCHHHHHHHH-HHHHHHHHHSCTTCEEEEEEECGGGGGGC------------CSCHHHHHHHHHHTTCE-EEEC
T ss_pred             EEEEECCCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECccCcccc------------ccCHHHHHHHHHHcCCe-EEEE
Confidence            9999999999999987 7888877764 789999999999997643            56778888899888876 9999


Q ss_pred             ccCCCCCHHHHHHHHHHHH
Q psy15714        178 SAKLNEGLDQVFIAAVRSA  196 (205)
Q Consensus       178 Sa~~~~~i~~~~~~i~~~~  196 (205)
                      ||++|+|++++|++|.+.+
T Consensus       149 Sa~~g~gi~~l~~~i~~~~  167 (170)
T 1r2q_A          149 SAKTSMNVNEIFMAIAKKL  167 (170)
T ss_dssp             CTTTCTTHHHHHHHHHHTS
T ss_pred             eCCCCCCHHHHHHHHHHHH
Confidence            9999999999999998765

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=100.00  E-value=8.6e-34  Score=201.38  Aligned_cols=167  Identities=26%  Similarity=0.320  Sum_probs=131.7

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcc--cccccccCcCCCcEE
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQED--YERLRPMSYPNTDCF   98 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~--~~~~~~~~~~~~~~~   98 (205)
                      .+.+||+++|++|+|||||+++|.++.+...+.+...+.+...+.+++..+.+.+||+||++.  +..+...+++.+|++
T Consensus         2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~   81 (175)
T 2nzj_A            2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY   81 (175)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred             ceEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence            356899999999999999999999988765444322233356678899999999999999987  566677788999999


Q ss_pred             EEEEECCCcchHHHHHHHHHHHHhhhC--CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEE
Q psy15714         99 LLCFSIGSTSSYENILSKWYPELKHHC--PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLE  176 (205)
Q Consensus        99 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (205)
                      ++|||++++.++..+. .|+..+....  .++|+++|+||+|+...+            .+..++++.++...+.. +++
T Consensus        82 i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~~piilv~NK~Dl~~~~------------~v~~~~~~~~~~~~~~~-~~~  147 (175)
T 2nzj_A           82 VIVYSIADRGSFESAS-ELRIQLRRTHQADHVPIILVGNKADLARCR------------EVSVEEGRACAVVFDCK-FIE  147 (175)
T ss_dssp             EEEEETTCHHHHHHHH-HHHHHHHHCC----CCEEEEEECTTCTTTC------------CSCHHHHHHHHHHHTSE-EEE
T ss_pred             EEEEECCCHHHHHHHH-HHHHHHHHhhccCCCCEEEEEEChhhcccc------------ccCHHHHHHHHHHcCCe-EEE
Confidence            9999999999999987 7888777653  589999999999997654            67778888888888875 999


Q ss_pred             cccCCCCCHHHHHHHHHHHHHhhcc
Q psy15714        177 CSAKLNEGLDQVFIAAVRSAVKKQD  201 (205)
Q Consensus       177 ~Sa~~~~~i~~~~~~i~~~~~~~~~  201 (205)
                      +||++|+|++++|++|.+.+...++
T Consensus       148 ~Sa~~g~gi~~l~~~l~~~~~~~~~  172 (175)
T 2nzj_A          148 TSATLQHNVAELFEGVVRQLRLRRR  172 (175)
T ss_dssp             CBTTTTBSHHHHHHHHHHHHHHHHC
T ss_pred             EecCCCCCHHHHHHHHHHHHHHhhc
Confidence            9999999999999999999876654

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=9.3e-34  Score=207.26  Aligned_cols=171  Identities=26%  Similarity=0.358  Sum_probs=136.4

Q ss_pred             cccccceeeEEEEECCCCCCHHHHHHHHhcCC--CCCCCcCccccccceeEEECCEEEEEEEEEcCCCcc-cccccccCc
Q psy15714         16 KSKSVHKALKVTTVGDGMVGKTCLLITHTENK--FPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQED-YERLRPMSY   92 (205)
Q Consensus        16 ~~~~~~~~~ki~v~G~~~~GKstli~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~~~~~   92 (205)
                      .+......+||+++|.+|+|||||+++|.+..  +...+.++..+.+...+.+++..+.+.+||++|++. ++.+...++
T Consensus        30 ~~~~~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~  109 (211)
T 2g3y_A           30 SSESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCM  109 (211)
T ss_dssp             -----CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCC
T ss_pred             ccccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHH
Confidence            34455678999999999999999999999643  344444433333456778899999999999999877 556677788


Q ss_pred             CCCcEEEEEEECCCcchHHHHHHHHHHHHhhhC--CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcC
Q psy15714         93 PNTDCFLLCFSIGSTSSYENILSKWYPELKHHC--PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIK  170 (205)
Q Consensus        93 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (205)
                      +.++++++|||++++.+|+.+. .|...+....  .++|+++|+||+|+...+            .+..++++.++...+
T Consensus       110 ~~a~~~ilVydvt~~~sf~~~~-~~~~~l~~~~~~~~~piilVgNK~DL~~~r------------~v~~~e~~~~a~~~~  176 (211)
T 2g3y_A          110 QVGDAYLIVYSITDRASFEKAS-ELRIQLRRARQTEDIPIILVGNKSDLVRCR------------EVSVSEGRACAVVFD  176 (211)
T ss_dssp             CCCSEEEEEEETTCHHHHHHHH-HHHHHHHTSGGGTTSCEEEEEECTTCGGGC------------CSCHHHHHHHHHHHT
T ss_pred             hhCCEEEEEEECCCHHHHHHHH-HHHHHHHHHhCCCCCcEEEEEEChHHhcCc------------eEeHHHHHHHHHHcC
Confidence            9999999999999999999987 7877776532  589999999999997643            677788888888888


Q ss_pred             CceEEEcccCCCCCHHHHHHHHHHHHHhhc
Q psy15714        171 AAEYLECSAKLNEGLDQVFIAAVRSAVKKQ  200 (205)
Q Consensus       171 ~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~  200 (205)
                      +. ++++||++|+|++++|+++++.+...+
T Consensus       177 ~~-~~e~SAk~g~~v~elf~~l~~~i~~~~  205 (211)
T 2g3y_A          177 CK-FIETSAAVQHNVKELFEGIVRQVRLRR  205 (211)
T ss_dssp             CE-EEECBTTTTBSHHHHHHHHHHHHHHHC
T ss_pred             CE-EEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence            76 999999999999999999999886544

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=100.00  E-value=1.2e-33  Score=204.30  Aligned_cols=168  Identities=27%  Similarity=0.542  Sum_probs=150.1

Q ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEE
Q psy15714         20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCF   98 (205)
Q Consensus        20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   98 (205)
                      ....+||+++|++|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.++..+..+++.+|++
T Consensus        13 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   92 (196)
T 3tkl_A           13 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI   92 (196)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEE
T ss_pred             cccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEE
Confidence            35779999999999999999999999998888778776655 46778889999999999999999999999999999999


Q ss_pred             EEEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEc
Q psy15714         99 LLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLEC  177 (205)
Q Consensus        99 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (205)
                      ++|||++++.++..+. .|+..+.... .++|+++|+||+|+...+            .+..++++.+++.++.. ++++
T Consensus        93 i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~-~~~~  158 (196)
T 3tkl_A           93 IVVYDVTDQESFNNVK-QWLQEIDRYASENVNKLLVGNKCDLTTKK------------VVDYTTAKEFADSLGIP-FLET  158 (196)
T ss_dssp             EEEEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECTTCTTTC------------CSCHHHHHHHHHHTTCC-EEEE
T ss_pred             EEEEECcCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECccccccc------------ccCHHHHHHHHHHcCCc-EEEE
Confidence            9999999999999987 7988887776 689999999999998765            67788899999999987 9999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHhhcc
Q psy15714        178 SAKLNEGLDQVFIAAVRSAVKKQD  201 (205)
Q Consensus       178 Sa~~~~~i~~~~~~i~~~~~~~~~  201 (205)
                      ||+++.|++++|+++.+.+.+...
T Consensus       159 Sa~~g~gv~~l~~~l~~~i~~~~~  182 (196)
T 3tkl_A          159 SAKNATNVEQSFMTMAAEIKKRMG  182 (196)
T ss_dssp             CTTTCTTHHHHHHHHHHHHHHHC-
T ss_pred             eCCCCCCHHHHHHHHHHHHHHHhc
Confidence            999999999999999999887654

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=100.00  E-value=7.6e-34  Score=200.11  Aligned_cols=162  Identities=24%  Similarity=0.327  Sum_probs=121.8

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEE
Q psy15714         23 ALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCF  102 (205)
Q Consensus        23 ~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~  102 (205)
                      .+||+++|++|+|||||++++.+..+. ...++.+..+...+.+++..+.+.+||+||++.++..+..+++.+|++++||
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFGGVEDG-PEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVY   80 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHCCC-----------CEEEEEEEETTEEEEEEEEECC---------------CCEEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHcCcccc-CCCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEE
Confidence            579999999999999999999977654 3345556666667788999999999999999999999999999999999999


Q ss_pred             ECCCcchHHHHHHHHHHHHhhhC--CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccC
Q psy15714        103 SIGSTSSYENILSKWYPELKHHC--PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAK  180 (205)
Q Consensus       103 d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  180 (205)
                      |++++.+++.+. .|+..+....  .++|+++|+||+|+...+            .+..++++.++...+.. ++++||+
T Consensus        81 d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~-~~~~Sa~  146 (166)
T 3q72_A           81 SVTDKGSFEKAS-ELRVQLRRARQTDDVPIILVGNKSDLVRSR------------EVSVDEGRACAVVFDCK-FIETSAA  146 (166)
T ss_dssp             ETTCHHHHHHHH-HHHHHHHHCC---CCCEEEEEECTTCCSSC------------CSCHHHHHHHHHHTTCE-EEECBGG
T ss_pred             ECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEecccccccc------------ccCHHHHHHHHHHhCCc-EEEeccC
Confidence            999999999987 6777776653  689999999999998764            78888899999998876 9999999


Q ss_pred             CCCCHHHHHHHHHHHHHhh
Q psy15714        181 LNEGLDQVFIAAVRSAVKK  199 (205)
Q Consensus       181 ~~~~i~~~~~~i~~~~~~~  199 (205)
                      +|+|++++|+++.+.+...
T Consensus       147 ~~~gi~~l~~~l~~~~~~~  165 (166)
T 3q72_A          147 LHHNVQALFEGVVRQIRLR  165 (166)
T ss_dssp             GTBSHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhc
Confidence            9999999999999988764

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=100.00  E-value=9.5e-34  Score=204.30  Aligned_cols=173  Identities=25%  Similarity=0.452  Sum_probs=147.6

Q ss_pred             ccccccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccc--eeEEECCE---------EEEEEEEEcCCCcc
Q psy15714         15 VKSKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYP--DTITVDNK---------TYDVTLWDTAGQED   83 (205)
Q Consensus        15 ~~~~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~---------~~~~~i~D~~g~~~   83 (205)
                      |........+||+|+|.+|+|||||++++.++.+...+.++.+..+.  ..+.+++.         .+.+.+||+||++.
T Consensus         3 m~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~   82 (195)
T 3bc1_A            3 MSDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLER   82 (195)
T ss_dssp             ---CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGG
T ss_pred             CcccccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHH
Confidence            44445677899999999999999999999999988777777766553  34555554         78999999999999


Q ss_pred             cccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhC--CCCCEEEEeeCcccccCchhhhhhhhhccccccHHH
Q psy15714         84 YERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC--PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQ  161 (205)
Q Consensus        84 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~  161 (205)
                      ++..+..+++.+|++++|||++++.++..+. .|+..+....  .++|+++|+||+|+...+            .+..++
T Consensus        83 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~~------------~~~~~~  149 (195)
T 3bc1_A           83 FRSLTTAFFRDAMGFLLLFDLTNEQSFLNVR-NWISQLQMHAYSENPDIVLCGNKSDLEDQR------------AVKEEE  149 (195)
T ss_dssp             GHHHHHHTTTTCSEEEEEEETTCHHHHHTHH-HHHHHHHHHSSSSSCCEEEEEECTTCGGGC------------CSCHHH
T ss_pred             HHHHHHHHHcCCCEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECccccccc------------ccCHHH
Confidence            9999999999999999999999999999987 8888887765  589999999999997654            667788


Q ss_pred             HHHHHHHcCCceEEEcccCCCCCHHHHHHHHHHHHHhhcc
Q psy15714        162 GKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQD  201 (205)
Q Consensus       162 ~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~  201 (205)
                      ++.+++..+.. ++++||+++.|++++|++|.+.+.+..+
T Consensus       150 ~~~~~~~~~~~-~~~~Sa~~~~~v~~l~~~l~~~~~~~~~  188 (195)
T 3bc1_A          150 ARELAEKYGIP-YFETSAANGTNISHAIEMLLDLIMKRME  188 (195)
T ss_dssp             HHHHHHHHTCC-EEECCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCC-EEEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence            88999888886 9999999999999999999999887654

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=2.1e-33  Score=200.32  Aligned_cols=168  Identities=29%  Similarity=0.547  Sum_probs=137.7

Q ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCC-CCCcCccccccc-eeEEECCEEEEEEEEEcCCCcccccccccCcCCCcE
Q psy15714         20 VHKALKVTTVGDGMVGKTCLLITHTENKFP-TDYVPTVFDNYP-DTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDC   97 (205)
Q Consensus        20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~-~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   97 (205)
                      ....+||+++|.+|+|||||++++.++.+. ..+.++.+..+. ..+.+++..+.+.+||+||++.++..+..+++.+|+
T Consensus         7 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~   86 (180)
T 2g6b_A            7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHA   86 (180)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSE
T ss_pred             CCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCE
Confidence            467899999999999999999999999885 455666666653 455788989999999999999999999999999999


Q ss_pred             EEEEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEE
Q psy15714         98 FLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLE  176 (205)
Q Consensus        98 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (205)
                      +++|||++++.++..+. .|+..+.... .++|+++|+||+|+...+            .+..++++.+++..+.. +++
T Consensus        87 ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~-~~~  152 (180)
T 2g6b_A           87 LLLLYDVTNKASFDNIQ-AWLTEIHEYAQHDVALMLLGNKVDSAHER------------VVKREDGEKLAKEYGLP-FME  152 (180)
T ss_dssp             EEEEEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECCSTTSCC------------CSCHHHHHHHHHHHTCC-EEE
T ss_pred             EEEEEECCCHHHHHHHH-HHHHHHHHhCCCCCcEEEEEECcccCccc------------ccCHHHHHHHHHHcCCe-EEE
Confidence            99999999999999887 7888887766 689999999999998754            67778888999888876 999


Q ss_pred             cccCCCCCHHHHHHHHHHHHHhhcc
Q psy15714        177 CSAKLNEGLDQVFIAAVRSAVKKQD  201 (205)
Q Consensus       177 ~Sa~~~~~i~~~~~~i~~~~~~~~~  201 (205)
                      +||+++.|++++|+++.+.+.....
T Consensus       153 ~Sa~~~~gi~~l~~~l~~~~~~~~~  177 (180)
T 2g6b_A          153 TSAKTGLNVDLAFTAIAKELKRRSM  177 (180)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHHC---
T ss_pred             EeCCCCCCHHHHHHHHHHHHHHHhc
Confidence            9999999999999999998876544

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=100.00  E-value=9.2e-34  Score=203.61  Aligned_cols=164  Identities=35%  Similarity=0.564  Sum_probs=144.7

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEE
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLL  100 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~  100 (205)
                      .+.+||+++|++|+|||||++++.++.+...+.++....+...+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus         2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~   81 (189)
T 4dsu_A            2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC   81 (189)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence            46799999999999999999999999998888888877777778889999999999999999999999999999999999


Q ss_pred             EEECCCcchHHHHHHHHHHHHhhhC--CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcc
Q psy15714        101 CFSIGSTSSYENILSKWYPELKHHC--PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECS  178 (205)
Q Consensus       101 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  178 (205)
                      |||++++.++..+. .|+..+....  .++|+++|+||+|+...             ....+++..+++..+.. ++++|
T Consensus        82 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~-------------~~~~~~~~~~~~~~~~~-~~~~S  146 (189)
T 4dsu_A           82 VFAINNTKSFEDIH-HYREQIKRVKDSEDVPMVLVGNKCDLPSR-------------TVDTKQAQDLARSYGIP-FIETS  146 (189)
T ss_dssp             EEETTCHHHHHHHH-HHHHHHHHHTTCSCCCEEEEEECTTSSSC-------------SSCHHHHHHHHHHHTCC-EEECC
T ss_pred             EEECCCHHHHHHHH-HHHHHHHHhcCCCCCcEEEEEECccCccc-------------ccCHHHHHHHHHHcCCe-EEEEe
Confidence            99999999999987 7888777654  58999999999999753             67788899999999877 99999


Q ss_pred             cCCCCCHHHHHHHHHHHHHhh
Q psy15714        179 AKLNEGLDQVFIAAVRSAVKK  199 (205)
Q Consensus       179 a~~~~~i~~~~~~i~~~~~~~  199 (205)
                      |++|.|++++|+++.+.+...
T Consensus       147 a~~g~gi~~l~~~l~~~~~~~  167 (189)
T 4dsu_A          147 AKTRQGVDDAFYTLVREIRKH  167 (189)
T ss_dssp             TTTCTTHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHh
Confidence            999999999999999998753

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-33  Score=208.65  Aligned_cols=168  Identities=30%  Similarity=0.481  Sum_probs=140.4

Q ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEE
Q psy15714         20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCF   98 (205)
Q Consensus        20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   98 (205)
                      ....+||+|+|++|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.|||+||++.|+.++..+++.+|++
T Consensus        10 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v   89 (223)
T 3cpj_B           10 YDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGA   89 (223)
T ss_dssp             CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEE
T ss_pred             CCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEE
Confidence            46679999999999999999999999998877778877666 45677889889999999999999999999999999999


Q ss_pred             EEEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEc
Q psy15714         99 LLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLEC  177 (205)
Q Consensus        99 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (205)
                      |+|||++++.++..+. .|+..+.... .++|++||+||+|+...+            .+..+++..+++..+.. ++++
T Consensus        90 ilV~D~~~~~s~~~~~-~~l~~i~~~~~~~~piilv~nK~Dl~~~~------------~v~~~~~~~~~~~~~~~-~~~~  155 (223)
T 3cpj_B           90 LIVYDISKSSSYENCN-HWLSELRENADDNVAVGLIGNKSDLAHLR------------AVPTEESKTFAQENQLL-FTET  155 (223)
T ss_dssp             EEEEC-CCHHHHHHHH-HHHHHHHHHCC--CEEEEEECCGGGGGGC------------CSCHHHHHHHHHHTTCE-EEEC
T ss_pred             EEEEeCCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEECccccccc------------ccCHHHHHHHHHHcCCE-EEEE
Confidence            9999999999999987 7988887765 689999999999997644            67778888999888875 9999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHhhcc
Q psy15714        178 SAKLNEGLDQVFIAAVRSAVKKQD  201 (205)
Q Consensus       178 Sa~~~~~i~~~~~~i~~~~~~~~~  201 (205)
                      ||++++|++++|++|.+.+....+
T Consensus       156 Sa~~~~gi~~l~~~l~~~i~~~~~  179 (223)
T 3cpj_B          156 SALNSENVDKAFEELINTIYQKVS  179 (223)
T ss_dssp             CCC-CCCHHHHHHHHHHHHTTCC-
T ss_pred             eCCCCCCHHHHHHHHHHHHHHHhh
Confidence            999999999999999999876543

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=100.00  E-value=1.4e-33  Score=199.29  Aligned_cols=164  Identities=27%  Similarity=0.514  Sum_probs=145.5

Q ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEE
Q psy15714         20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCF   98 (205)
Q Consensus        20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   98 (205)
                      ..+.+||+++|++|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus         3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~   82 (170)
T 1z0j_A            3 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAA   82 (170)
T ss_dssp             SEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred             CCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEE
Confidence            35679999999999999999999999998887788877665 45677888889999999999999999999999999999


Q ss_pred             EEEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEc
Q psy15714         99 LLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLEC  177 (205)
Q Consensus        99 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (205)
                      ++|||++++.++..+. .|+..+.... +++|+++|+||+|+...+            .+..++++.+++..+.. ++++
T Consensus        83 i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~~iilv~nK~Dl~~~~------------~v~~~~~~~~~~~~~~~-~~~~  148 (170)
T 1z0j_A           83 IIVYDITKEETFSTLK-NWVRELRQHGPPSIVVAIAGNKCDLTDVR------------EVMERDAKDYADSIHAI-FVET  148 (170)
T ss_dssp             EEEEETTCHHHHHHHH-HHHHHHHHHSCTTSEEEEEEECTTCGGGC------------CSCHHHHHHHHHHTTCE-EEEC
T ss_pred             EEEEECcCHHHHHHHH-HHHHHHHHhCCCCCcEEEEEECCcccccc------------ccCHHHHHHHHHHcCCE-EEEE
Confidence            9999999999999986 8988888764 789999999999997654            67788889999888875 9999


Q ss_pred             ccCCCCCHHHHHHHHHHHHH
Q psy15714        178 SAKLNEGLDQVFIAAVRSAV  197 (205)
Q Consensus       178 Sa~~~~~i~~~~~~i~~~~~  197 (205)
                      ||+++.|++++|+++.+.+.
T Consensus       149 Sa~~~~~i~~l~~~i~~~i~  168 (170)
T 1z0j_A          149 SAKNAININELFIEISRRIP  168 (170)
T ss_dssp             BTTTTBSHHHHHHHHHHHCC
T ss_pred             eCCCCcCHHHHHHHHHHHHh
Confidence            99999999999999988753

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=100.00  E-value=2.7e-33  Score=199.29  Aligned_cols=167  Identities=32%  Similarity=0.519  Sum_probs=141.5

Q ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEE
Q psy15714         20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCF   98 (205)
Q Consensus        20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   98 (205)
                      ....+||+++|++|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.++..+..+++.+|++
T Consensus         4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   83 (177)
T 1wms_A            4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC   83 (177)
T ss_dssp             CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred             ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEE
Confidence            45679999999999999999999999998877778777655 56677889889999999999999999999999999999


Q ss_pred             EEEEECCCcchHHHHHHHHHHHHhhhC-----CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCce
Q psy15714         99 LLCFSIGSTSSYENILSKWYPELKHHC-----PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAE  173 (205)
Q Consensus        99 i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (205)
                      ++|||++++.++..+. .|+..+....     .++|+++|+||+|+...             .+..++++.+++.....+
T Consensus        84 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~-------------~~~~~~~~~~~~~~~~~~  149 (177)
T 1wms_A           84 LLTFSVDDSQSFQNLS-NWKKEFIYYADVKEPESFPFVILGNKIDISER-------------QVSTEEAQAWCRDNGDYP  149 (177)
T ss_dssp             EEEEETTCHHHHHTHH-HHHHHHHHHHTCSCTTTSCEEEEEECTTCSSC-------------SSCHHHHHHHHHHTTCCC
T ss_pred             EEEEECcCHHHHHHHH-HHHHHHHHHccccccCCCcEEEEEECCccccc-------------ccCHHHHHHHHHhcCCce
Confidence            9999999999999886 7888776543     57899999999999732             677788888888555555


Q ss_pred             EEEcccCCCCCHHHHHHHHHHHHHhhc
Q psy15714        174 YLECSAKLNEGLDQVFIAAVRSAVKKQ  200 (205)
Q Consensus       174 ~~~~Sa~~~~~i~~~~~~i~~~~~~~~  200 (205)
                      ++++||++|.|++++|+++.+.+.++.
T Consensus       150 ~~~~Sa~~~~gi~~l~~~l~~~~~~~~  176 (177)
T 1wms_A          150 YFETSAKDATNVAAAFEEAVRRVLATE  176 (177)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHHHTC-
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHHhhc
Confidence            999999999999999999999987653

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=100.00  E-value=6.8e-34  Score=200.13  Aligned_cols=163  Identities=33%  Similarity=0.513  Sum_probs=144.1

Q ss_pred             eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEE
Q psy15714         22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLC  101 (205)
Q Consensus        22 ~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v  101 (205)
                      +.+||+++|++|+|||||++++.++.+...+.++....+...+.+++..+.+.+||+||++.+..++..+++.+|++++|
T Consensus         2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v   81 (167)
T 1kao_A            2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV   81 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence            46899999999999999999999999888888887777677788899999999999999999999888899999999999


Q ss_pred             EECCCcchHHHHHHHHHHHHhhhC--CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEccc
Q psy15714        102 FSIGSTSSYENILSKWYPELKHHC--PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSA  179 (205)
Q Consensus       102 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  179 (205)
                      ||++++.+++.+. .|+..+....  .+.|+++|+||+|+...+            .+..++++.+++..+.. ++++||
T Consensus        82 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~-~~~~Sa  147 (167)
T 1kao_A           82 YSLVNQQSFQDIK-PMRDQIIRVKRYEKVPVILVGNKVDLESER------------EVSSSEGRALAEEWGCP-FMETSA  147 (167)
T ss_dssp             EETTCHHHHHHHH-HHHHHHHHHTTTSCCCEEEEEECGGGGGGC------------CSCHHHHHHHHHHHTSC-EEEECT
T ss_pred             EeCCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECCcccccc------------cCCHHHHHHHHHHhCCC-EEEecC
Confidence            9999999999987 6766665544  589999999999997654            67778888899888876 999999


Q ss_pred             CCCCCHHHHHHHHHHHHHh
Q psy15714        180 KLNEGLDQVFIAAVRSAVK  198 (205)
Q Consensus       180 ~~~~~i~~~~~~i~~~~~~  198 (205)
                      ++|.|++++|+++.+.+.+
T Consensus       148 ~~~~gi~~l~~~l~~~~~~  166 (167)
T 1kao_A          148 KSKTMVDELFAEIVRQMNY  166 (167)
T ss_dssp             TCHHHHHHHHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHhh
Confidence            9999999999999988753

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=100.00  E-value=9.2e-34  Score=200.12  Aligned_cols=165  Identities=27%  Similarity=0.504  Sum_probs=143.6

Q ss_pred             eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEE
Q psy15714         22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLL  100 (205)
Q Consensus        22 ~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~  100 (205)
                      +.+||+++|++|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1ek0_A            2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV   81 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence            468999999999999999999999998877778777665 4567788899999999999999999999999999999999


Q ss_pred             EEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEccc
Q psy15714        101 CFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSA  179 (205)
Q Consensus       101 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  179 (205)
                      |||++++.++..+. .|+..+.... .++|+++|+||+|+.....         .+.+..++++.+++..+.. ++++||
T Consensus        82 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~---------~~~v~~~~~~~~~~~~~~~-~~~~Sa  150 (170)
T 1ek0_A           82 VYDVTKPQSFIKAR-HWVKELHEQASKDIIIALVGNKIDXLQEGG---------ERKVAREEGEKLAEEKGLL-FFETSA  150 (170)
T ss_dssp             EEETTCHHHHHHHH-HHHHHHHHHSCTTCEEEEEEECGGGGGSSC---------CCCSCHHHHHHHHHHHTCE-EEECCT
T ss_pred             EEecCChHHHHHHH-HHHHHHHHhcCCCCcEEEEEECCCcccccc---------ccCCCHHHHHHHHHHcCCE-EEEEeC
Confidence            99999999999987 7888887765 6899999999999976421         1267788888999888876 999999


Q ss_pred             CCCCCHHHHHHHHHHHHH
Q psy15714        180 KLNEGLDQVFIAAVRSAV  197 (205)
Q Consensus       180 ~~~~~i~~~~~~i~~~~~  197 (205)
                      ++|.|++++|+++.+.+.
T Consensus       151 ~~~~gi~~l~~~l~~~i~  168 (170)
T 1ek0_A          151 KTGENVNDVFLGIGEKIP  168 (170)
T ss_dssp             TTCTTHHHHHHHHHTTSC
T ss_pred             CCCCCHHHHHHHHHHHHh
Confidence            999999999999987653

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.9e-33  Score=203.02  Aligned_cols=167  Identities=29%  Similarity=0.539  Sum_probs=147.6

Q ss_pred             ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcE
Q psy15714         19 SVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDC   97 (205)
Q Consensus        19 ~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   97 (205)
                      ...+.+||+++|.+|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.|||+||++.++..+..+++.+|+
T Consensus        11 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   90 (195)
T 1x3s_A           11 DVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQG   90 (195)
T ss_dssp             TEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCE
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCE
Confidence            456789999999999999999999999998888788876655 4567788999999999999999999999999999999


Q ss_pred             EEEEEECCCcchHHHHHHHHHHHHhhhC--CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEE
Q psy15714         98 FLLCFSIGSTSSYENILSKWYPELKHHC--PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYL  175 (205)
Q Consensus        98 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (205)
                      +++|||++++.++..+. .|+..+....  .++|+++|+||+|+...             .+..+++..+++..+.. ++
T Consensus        91 ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~-------------~~~~~~~~~~~~~~~~~-~~  155 (195)
T 1x3s_A           91 VILVYDVTRRDTFVKLD-NWLNELETYCTRNDIVNMLVGNKIDKENR-------------EVDRNEGLKFARKHSML-FI  155 (195)
T ss_dssp             EEEEEETTCHHHHHTHH-HHHHHHTTCCSCSCCEEEEEEECTTSSSC-------------CSCHHHHHHHHHHTTCE-EE
T ss_pred             EEEEEECcCHHHHHHHH-HHHHHHHHhcCcCCCcEEEEEECCcCccc-------------ccCHHHHHHHHHHcCCE-EE
Confidence            99999999999999987 7988887765  58999999999999542             56778888999988876 99


Q ss_pred             EcccCCCCCHHHHHHHHHHHHHhhc
Q psy15714        176 ECSAKLNEGLDQVFIAAVRSAVKKQ  200 (205)
Q Consensus       176 ~~Sa~~~~~i~~~~~~i~~~~~~~~  200 (205)
                      ++||+++.|++++|++|.+.+....
T Consensus       156 ~~Sa~~~~gi~~l~~~l~~~~~~~~  180 (195)
T 1x3s_A          156 EASAKTCDGVQCAFEELVEKIIQTP  180 (195)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHHTSG
T ss_pred             EecCCCCCCHHHHHHHHHHHHHhhh
Confidence            9999999999999999999987653

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=100.00  E-value=1.1e-33  Score=199.83  Aligned_cols=165  Identities=27%  Similarity=0.616  Sum_probs=139.2

Q ss_pred             eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEE
Q psy15714         22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLL  100 (205)
Q Consensus        22 ~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~  100 (205)
                      ..+||+++|++|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1g16_A            2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL   81 (170)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred             CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence            468999999999999999999999998877777777665 4566778888999999999999999999999999999999


Q ss_pred             EEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEccc
Q psy15714        101 CFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSA  179 (205)
Q Consensus       101 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  179 (205)
                      |||++++.++..+. .|+..+.... .++|+++|+||+|+...             .+..++++.+++..+.. ++++||
T Consensus        82 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~~-------------~~~~~~~~~~~~~~~~~-~~~~Sa  146 (170)
T 1g16_A           82 VYDITDERTFTNIK-QWFKTVNEHANDEAQLLLVGNKSDMETR-------------VVTADQGEALAKELGIP-FIESSA  146 (170)
T ss_dssp             EEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECTTCTTC-------------CSCHHHHHHHHHHHTCC-EEECBT
T ss_pred             EEECCCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECccCCcC-------------ccCHHHHHHHHHHcCCe-EEEEEC
Confidence            99999999998887 7888887765 68999999999999432             56778888899888876 999999


Q ss_pred             CCCCCHHHHHHHHHHHHHhhcc
Q psy15714        180 KLNEGLDQVFIAAVRSAVKKQD  201 (205)
Q Consensus       180 ~~~~~i~~~~~~i~~~~~~~~~  201 (205)
                      ++|.|++++|.++.+.+.++.+
T Consensus       147 ~~~~gv~~l~~~l~~~~~~~~~  168 (170)
T 1g16_A          147 KNDDNVNEIFFTLAKLIQEKID  168 (170)
T ss_dssp             TTTBSHHHHHHHHHHHHHHTC-
T ss_pred             CCCCCHHHHHHHHHHHHHHHhh
Confidence            9999999999999999887644

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=8.6e-34  Score=205.38  Aligned_cols=170  Identities=30%  Similarity=0.482  Sum_probs=145.9

Q ss_pred             cccccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCC
Q psy15714         16 KSKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNT   95 (205)
Q Consensus        16 ~~~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~   95 (205)
                      .+....+.+||+++|.+|+|||||++++.++.+...+.++.+..+...+.+++..+.+.+||+||++. ...+..+++.+
T Consensus        21 ~~~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~   99 (196)
T 2atv_A           21 QSMAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMRWG   99 (196)
T ss_dssp             ------CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHC
T ss_pred             hccCCCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhhccC
Confidence            34445678999999999999999999999999988888888877777788899999999999999988 66777889999


Q ss_pred             cEEEEEEECCCcchHHHHHHHHHHHHhhhC--CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCce
Q psy15714         96 DCFLLCFSIGSTSSYENILSKWYPELKHHC--PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAE  173 (205)
Q Consensus        96 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (205)
                      |++++|||++++.+++.+. .|+..+....  .++|+++|+||+|+...+            .++.++++.+++..+.. 
T Consensus       100 d~iilv~D~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~NK~Dl~~~~------------~v~~~~~~~~~~~~~~~-  165 (196)
T 2atv_A          100 EGFVLVYDITDRGSFEEVL-PLKNILDEIKKPKNVTLILVGNKADLDHSR------------QVSTEEGEKLATELACA-  165 (196)
T ss_dssp             SEEEEEEETTCHHHHHTHH-HHHHHHHHHHTTSCCCEEEEEECGGGGGGC------------CSCHHHHHHHHHHHTSE-
T ss_pred             CEEEEEEECcCHHHHHHHH-HHHHHHHHhhCCCCCcEEEEEECccccccc------------ccCHHHHHHHHHHhCCe-
Confidence            9999999999999999987 7887776643  689999999999997654            67788899999888876 


Q ss_pred             EEEcccCCCC-CHHHHHHHHHHHHHhhc
Q psy15714        174 YLECSAKLNE-GLDQVFIAAVRSAVKKQ  200 (205)
Q Consensus       174 ~~~~Sa~~~~-~i~~~~~~i~~~~~~~~  200 (205)
                      ++++||++|. |++++|+++.+.+.+++
T Consensus       166 ~~~~Sa~~g~~gi~~l~~~l~~~i~~~~  193 (196)
T 2atv_A          166 FYECSACTGEGNITEIFYELCREVRRRR  193 (196)
T ss_dssp             EEECCTTTCTTCHHHHHHHHHHHHHHHH
T ss_pred             EEEECCCcCCcCHHHHHHHHHHHHHhhc
Confidence            9999999999 99999999999987654

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=100.00  E-value=1.6e-33  Score=201.09  Aligned_cols=170  Identities=30%  Similarity=0.542  Sum_probs=131.0

Q ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEEC-CEEEEEEEEEcCCCcccccccccCcCCCcE
Q psy15714         20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVD-NKTYDVTLWDTAGQEDYERLRPMSYPNTDC   97 (205)
Q Consensus        20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   97 (205)
                      ....+||+++|++|+|||||++++.++.+...+.++.+..+ ...+.++ +..+.+.+||+||++.++..+..+++.+|+
T Consensus         5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   84 (182)
T 1ky3_A            5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC   84 (182)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred             cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence            45679999999999999999999999998887778776555 4455555 556889999999999999999999999999


Q ss_pred             EEEEEECCCcchHHHHHHHHHHHHhhhC-----CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCc
Q psy15714         98 FLLCFSIGSTSSYENILSKWYPELKHHC-----PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAA  172 (205)
Q Consensus        98 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (205)
                      +++|||++++.++..+. .|+..+....     .++|+++|+||+|+....           +.+..++++.+++.....
T Consensus        85 ~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-----------~~v~~~~~~~~~~~~~~~  152 (182)
T 1ky3_A           85 CVLVYDVTNASSFENIK-SWRDEFLVHANVNSPETFPFVILGNKIDAEESK-----------KIVSEKSAQELAKSLGDI  152 (182)
T ss_dssp             EEEEEETTCHHHHHTHH-HHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGG-----------CCSCHHHHHHHHHHTTSC
T ss_pred             EEEEEECCChHHHHHHH-HHHHHHHHHhcccCcCCCcEEEEEECCcccccc-----------ccCCHHHHHHHHHhcCCC
Confidence            99999999999999987 7887776543     589999999999996432           156778888888855555


Q ss_pred             eEEEcccCCCCCHHHHHHHHHHHHHhhcc
Q psy15714        173 EYLECSAKLNEGLDQVFIAAVRSAVKKQD  201 (205)
Q Consensus       173 ~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~  201 (205)
                      +++++||++|+|++++|+++.+.+.++++
T Consensus       153 ~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~  181 (182)
T 1ky3_A          153 PLFLTSAKNAINVDTAFEEIARSALQQNQ  181 (182)
T ss_dssp             CEEEEBTTTTBSHHHHHHHHHHHHHHHHC
T ss_pred             eEEEEecCCCCCHHHHHHHHHHHHHHhhc
Confidence            59999999999999999999999987765

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=100.00  E-value=4.1e-34  Score=203.69  Aligned_cols=168  Identities=23%  Similarity=0.333  Sum_probs=143.7

Q ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECC-EEEEEEEEEcCCCcccccccccCcCCCcE
Q psy15714         20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDN-KTYDVTLWDTAGQEDYERLRPMSYPNTDC   97 (205)
Q Consensus        20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   97 (205)
                      ..+.+||+++|++|+|||||++++.++.+...+.++.+..+ ...+.+++ ..+.+.+||+||++.+...+..+++.+|+
T Consensus         3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~   82 (178)
T 2hxs_A            3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG   82 (178)
T ss_dssp             CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence            35679999999999999999999999988766677776444 45667766 67899999999999999999999999999


Q ss_pred             EEEEEECCCcchHHHHHHHHHHHHhhhC---CCCC-EEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCce
Q psy15714         98 FLLCFSIGSTSSYENILSKWYPELKHHC---PKVP-IILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAE  173 (205)
Q Consensus        98 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p-~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (205)
                      +++|||++++.+++.+. .|+..+....   .+.| +++|+||+|+...+            .++.++++.+++..+.. 
T Consensus        83 ~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~-  148 (178)
T 2hxs_A           83 VLLVYDITNYQSFENLE-DWYTVVKKVSEESETQPLVALVGNKIDLEHMR------------TIKPEKHLRFCQENGFS-  148 (178)
T ss_dssp             EEEEEETTCHHHHHTHH-HHHHHHHHHHHHHTCCCEEEEEEECGGGGGGC------------SSCHHHHHHHHHHHTCE-
T ss_pred             EEEEEECCCHHHHHHHH-HHHHHHHHHhcccCCCCeEEEEEEcccccccc------------ccCHHHHHHHHHHcCCc-
Confidence            99999999999999887 7888887643   2566 89999999997643            67778889999888876 


Q ss_pred             EEEcccCCCCCHHHHHHHHHHHHHhhcc
Q psy15714        174 YLECSAKLNEGLDQVFIAAVRSAVKKQD  201 (205)
Q Consensus       174 ~~~~Sa~~~~~i~~~~~~i~~~~~~~~~  201 (205)
                      ++++||++|+|++++|+++.+.+.+...
T Consensus       149 ~~~~Sa~~~~gi~~l~~~l~~~~~~~~~  176 (178)
T 2hxs_A          149 SHFVSAKTGDSVFLCFQKVAAEILGIKL  176 (178)
T ss_dssp             EEEECTTTCTTHHHHHHHHHHHHTTCCC
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHHhhhh
Confidence            9999999999999999999998876543

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1e-33  Score=204.35  Aligned_cols=167  Identities=28%  Similarity=0.474  Sum_probs=145.2

Q ss_pred             ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcE
Q psy15714         19 SVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDC   97 (205)
Q Consensus        19 ~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   97 (205)
                      ...+.+||+|+|.+|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus        19 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   98 (192)
T 2fg5_A           19 SAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAA   98 (192)
T ss_dssp             --CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSE
T ss_pred             ccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCE
Confidence            346789999999999999999999999998877788877665 4556677888999999999999999999999999999


Q ss_pred             EEEEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEE
Q psy15714         98 FLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLE  176 (205)
Q Consensus        98 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (205)
                      +++|||++++.++..+. .|+..+.... .++|+++|+||+|+...+            .+..++++.+++..+.. +++
T Consensus        99 iilV~d~~~~~s~~~~~-~~~~~i~~~~~~~~piiiv~NK~Dl~~~~------------~v~~~~~~~~~~~~~~~-~~~  164 (192)
T 2fg5_A           99 AVIVYDITKQDSFYTLK-KWVKELKEHGPENIVMAIAGNKCDLSDIR------------EVPLKDAKEYAESIGAI-VVE  164 (192)
T ss_dssp             EEEEEETTCTHHHHHHH-HHHHHHHHHSCTTCEEEEEEECGGGGGGC------------CSCHHHHHHHHHTTTCE-EEE
T ss_pred             EEEEEeCCCHHHHHHHH-HHHHHHHHhCCCCCcEEEEEECccccccc------------ccCHHHHHHHHHHcCCE-EEE
Confidence            99999999999999986 8998888776 689999999999997543            67788899999888876 999


Q ss_pred             cccCCCCCHHHHHHHHHHHHHhh
Q psy15714        177 CSAKLNEGLDQVFIAAVRSAVKK  199 (205)
Q Consensus       177 ~Sa~~~~~i~~~~~~i~~~~~~~  199 (205)
                      +||+++.|++++|++|.+.+.+.
T Consensus       165 ~Sa~~~~gi~~l~~~l~~~i~~~  187 (192)
T 2fg5_A          165 TSAKNAINIEELFQGISRQIPPL  187 (192)
T ss_dssp             CBTTTTBSHHHHHHHHHHTCC--
T ss_pred             EeCCCCcCHHHHHHHHHHHHHhh
Confidence            99999999999999999876543

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=100.00  E-value=1.6e-33  Score=202.80  Aligned_cols=166  Identities=28%  Similarity=0.518  Sum_probs=141.3

Q ss_pred             cccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccc-cccccCcCCC
Q psy15714         18 KSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYE-RLRPMSYPNT   95 (205)
Q Consensus        18 ~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~-~~~~~~~~~~   95 (205)
                      ....+.+||+++|.+|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.++ ..+..+++.+
T Consensus        15 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~   94 (189)
T 1z06_A           15 GSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNV   94 (189)
T ss_dssp             ----CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTC
T ss_pred             CCCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCC
Confidence            3446789999999999999999999999999887778777665 4567788888999999999999998 7788889999


Q ss_pred             cEEEEEEECCCcchHHHHHHHHHHHHhhhC--CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCce
Q psy15714         96 DCFLLCFSIGSTSSYENILSKWYPELKHHC--PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAE  173 (205)
Q Consensus        96 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (205)
                      |++++|||++++.++..+. .|+..+....  .++|+++|+||+|+...+            .+..++++.+++..+.. 
T Consensus        95 d~iilv~D~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~~------------~v~~~~~~~~~~~~~~~-  160 (189)
T 1z06_A           95 HAVVFVYDMTNMASFHSLP-AWIEECKQHLLANDIPRILVGNKCDLRSAI------------QVPTDLAQKFADTHSMP-  160 (189)
T ss_dssp             CEEEEEEETTCHHHHHTHH-HHHHHHHHHCCCSCCCEEEEEECTTCGGGC------------CSCHHHHHHHHHHTTCC-
T ss_pred             CEEEEEEECcCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECccccccc------------eeCHHHHHHHHHHcCCE-
Confidence            9999999999999999987 7888887764  689999999999997654            67788889999988886 


Q ss_pred             EEEcccCCC---CCHHHHHHHHHHHHH
Q psy15714        174 YLECSAKLN---EGLDQVFIAAVRSAV  197 (205)
Q Consensus       174 ~~~~Sa~~~---~~i~~~~~~i~~~~~  197 (205)
                      ++++||+++   +|++++|.+|.+.+.
T Consensus       161 ~~~~Sa~~~~~~~~i~~l~~~l~~~i~  187 (189)
T 1z06_A          161 LFETSAKNPNDNDHVEAIFMTLAHKLK  187 (189)
T ss_dssp             EEECCSSSGGGGSCHHHHHHHHC----
T ss_pred             EEEEeCCcCCcccCHHHHHHHHHHHHh
Confidence            999999999   999999999988764

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=100.00  E-value=7.2e-34  Score=206.31  Aligned_cols=175  Identities=31%  Similarity=0.468  Sum_probs=136.6

Q ss_pred             cccccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCC
Q psy15714         16 KSKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPN   94 (205)
Q Consensus        16 ~~~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~   94 (205)
                      ++....+.+||+++|.+|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.|||+||++.++..+..+++.
T Consensus        21 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~  100 (199)
T 2p5s_A           21 KSFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRK  100 (199)
T ss_dssp             -------CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHH
T ss_pred             CCcCcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhh
Confidence            344566789999999999999999999999998877778777666 4677889999999999999999999988889999


Q ss_pred             CcEEEEEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCce
Q psy15714         95 TDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAE  173 (205)
Q Consensus        95 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (205)
                      +|++|+|||++++.++..+. .|+..+.... .++|+++|+||+|+......      ...+.+..++++.+++..+.. 
T Consensus       101 ~d~iilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~------~~~~~v~~~~~~~~~~~~~~~-  172 (199)
T 2p5s_A          101 ADGVLLLYDVTCEKSFLNIR-EWVDMIEDAAHETVPIMLVGNKADIRDTAAT------EGQKCVPGHFGEKLAMTYGAL-  172 (199)
T ss_dssp             CSEEEEEEETTCHHHHHTHH-HHHHHHHHHC---CCEEEEEECGGGHHHHHH------TTCCCCCHHHHHHHHHHHTCE-
T ss_pred             CCEEEEEEECCChHHHHHHH-HHHHHHHHhcCCCCCEEEEEECccccccccc------ccccccCHHHHHHHHHHcCCe-
Confidence            99999999999999999987 7988887765 68999999999999643210      112367788899999998886 


Q ss_pred             EEEcccCCCCCHHHHHHHHHHHHHh
Q psy15714        174 YLECSAKLNEGLDQVFIAAVRSAVK  198 (205)
Q Consensus       174 ~~~~Sa~~~~~i~~~~~~i~~~~~~  198 (205)
                      ++++||++|.|++++|.++.+.+.+
T Consensus       173 ~~~~SA~~g~gv~el~~~l~~~i~~  197 (199)
T 2p5s_A          173 FCETSAKDGSNIVEAVLHLAREVKK  197 (199)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHHTC
T ss_pred             EEEeeCCCCCCHHHHHHHHHHHHHh
Confidence            9999999999999999999988753

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=100.00  E-value=8.9e-34  Score=205.31  Aligned_cols=169  Identities=27%  Similarity=0.367  Sum_probs=138.0

Q ss_pred             cccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcc-ccccceeEEECCEEEEEEEEEcCCCccccc-ccccCcCCC
Q psy15714         18 KSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQEDYER-LRPMSYPNT   95 (205)
Q Consensus        18 ~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-~~~~~~~~~   95 (205)
                      ......+||+++|++|+|||||+++|.+........+++ .+.+...+.+++..+.+.+||++|++.+.. ++..+++.+
T Consensus        18 ~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~   97 (195)
T 3cbq_A           18 GQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTG   97 (195)
T ss_dssp             ----CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHC
T ss_pred             CCCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccC
Confidence            345677999999999999999999997544332223333 333456677899999999999999988765 667788899


Q ss_pred             cEEEEEEECCCcchHHHHHHHHHHHHhhhC--CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCce
Q psy15714         96 DCFLLCFSIGSTSSYENILSKWYPELKHHC--PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAE  173 (205)
Q Consensus        96 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (205)
                      |++++|||++++.++..+. .|+..+....  .++|+++|+||+|+...+            .++.++++.+++..+.. 
T Consensus        98 d~~ilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~~------------~v~~~~~~~~a~~~~~~-  163 (195)
T 3cbq_A           98 DAFLIVFSVTDRRSFSKVP-ETLLRLRAGRPHHDLPVILVGNKSDLARSR------------EVSLEEGRHLAGTLSCK-  163 (195)
T ss_dssp             SEEEEEEETTCHHHHHTHH-HHHHHHHHHSTTSCCCEEEEEECTTCTTTC------------CSCHHHHHHHHHHTTCE-
T ss_pred             CEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEeechhccccC------------CcCHHHHHHHHHHhCCE-
Confidence            9999999999999999987 7888887655  489999999999997654            67788899999988875 


Q ss_pred             EEEcccCCCCCHHHHHHHHHHHHHhhc
Q psy15714        174 YLECSAKLNEGLDQVFIAAVRSAVKKQ  200 (205)
Q Consensus       174 ~~~~Sa~~~~~i~~~~~~i~~~~~~~~  200 (205)
                      ++++||+++.|++++|+++++.+...+
T Consensus       164 ~~e~Sa~~~~~v~~lf~~l~~~i~~~~  190 (195)
T 3cbq_A          164 HIETSAALHHNTRELFEGAVRQIRLRR  190 (195)
T ss_dssp             EEEEBTTTTBSHHHHHHHHHHHHHTTC
T ss_pred             EEEEcCCCCCCHHHHHHHHHHHHHHhc
Confidence            999999999999999999999887544

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=100.00  E-value=2.3e-33  Score=198.14  Aligned_cols=163  Identities=27%  Similarity=0.356  Sum_probs=128.8

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccc-cccceeEEECCEEEEEEEEEcCCCccccc-ccccCcCCCcEEEE
Q psy15714         23 ALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVF-DNYPDTITVDNKTYDVTLWDTAGQEDYER-LRPMSYPNTDCFLL  100 (205)
Q Consensus        23 ~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-~~~~~~~~~~~~i~  100 (205)
                      .+||+++|++|+|||||++++.+..+...+.++.. ..+...+.+++..+.+.+||+||++.+.. .+..+++.+|++++
T Consensus         2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~   81 (169)
T 3q85_A            2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI   81 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence            48999999999999999999998776544444333 33356777899999999999999998876 66777889999999


Q ss_pred             EEECCCcchHHHHHHHHHHHHhhhC--CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcc
Q psy15714        101 CFSIGSTSSYENILSKWYPELKHHC--PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECS  178 (205)
Q Consensus       101 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  178 (205)
                      |||+++++++..+. .|+..+....  .++|+++|+||+|+...+            .++.+++..+++..+.. ++++|
T Consensus        82 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~-~~~~S  147 (169)
T 3q85_A           82 VFSVTDRRSFSKVP-ETLLRLRAGRPHHDLPVILVGNKSDLARSR------------EVSLEEGRHLAGTLSCK-HIETS  147 (169)
T ss_dssp             EEETTCHHHHHTHH-HHHHHHHHHSTTSCCCEEEEEECTTCGGGC------------CSCHHHHHHHHHHTTCE-EEECB
T ss_pred             EEECCChHHHHHHH-HHHHHHHhcccCCCCCEEEEeeCcchhhcc------------cCCHHHHHHHHHHcCCc-EEEec
Confidence            99999999999987 7877777765  489999999999997654            78889999999999886 99999


Q ss_pred             cCCCCCHHHHHHHHHHHHHhh
Q psy15714        179 AKLNEGLDQVFIAAVRSAVKK  199 (205)
Q Consensus       179 a~~~~~i~~~~~~i~~~~~~~  199 (205)
                      |+++.|++++|+++.+.+...
T Consensus       148 a~~~~~v~~l~~~l~~~i~~~  168 (169)
T 3q85_A          148 AALHHNTRELFEGAVRQIRLR  168 (169)
T ss_dssp             TTTTBSHHHHHHHHHHHHHHT
T ss_pred             CccCCCHHHHHHHHHHHHHhc
Confidence            999999999999999988764

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=100.00  E-value=5.5e-34  Score=209.49  Aligned_cols=173  Identities=28%  Similarity=0.473  Sum_probs=144.9

Q ss_pred             ccccccccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCE----------EEEEEEEEcCCC
Q psy15714         13 KDVKSKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNK----------TYDVTLWDTAGQ   81 (205)
Q Consensus        13 ~~~~~~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~----------~~~~~i~D~~g~   81 (205)
                      .+.......+.+||+|+|.+|+|||||+++|.++.+...+.++.+..+ ...+.+++.          .+.+.|||+||+
T Consensus        15 ~~~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~   94 (217)
T 2f7s_A           15 VPRGSGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQ   94 (217)
T ss_dssp             ------CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESH
T ss_pred             CcCcCCCcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCc
Confidence            333445567889999999999999999999999998777777766555 345556655          789999999999


Q ss_pred             cccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhC--CCCCEEEEeeCcccccCchhhhhhhhhccccccH
Q psy15714         82 EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC--PKVPIILVGTKADLRSENKTIDKKKAAEVDLVST  159 (205)
Q Consensus        82 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~  159 (205)
                      +.++..+..+++.+|++|+|||++++.++..+. .|+..+....  .++|+++|+||+|+...+            .+..
T Consensus        95 ~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~-~~l~~i~~~~~~~~~piilV~NK~Dl~~~~------------~v~~  161 (217)
T 2f7s_A           95 ERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVR-NWMSQLQANAYCENPDIVLIGNKADLPDQR------------EVNE  161 (217)
T ss_dssp             HHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHH-HHHHTCCCCCTTTCCEEEEEEECTTCGGGC------------CSCH
T ss_pred             HhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHH-HHHHHHHHhcCcCCCCEEEEEECCcccccc------------ccCH
Confidence            999999889999999999999999999999987 7888776654  589999999999997654            6778


Q ss_pred             HHHHHHHHHcCCceEEEcccCCCCCHHHHHHHHHHHHHhh
Q psy15714        160 SQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKK  199 (205)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  199 (205)
                      ++++.+++..+.. ++++||++++|++++|++|.+.+.+.
T Consensus       162 ~~~~~~~~~~~~~-~~~~Sa~~g~gi~~l~~~l~~~i~~~  200 (217)
T 2f7s_A          162 RQARELADKYGIP-YFETSAATGQNVEKAVETLLDLIMKR  200 (217)
T ss_dssp             HHHHHHHHHTTCC-EEEEBTTTTBTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCc-EEEEECCCCCCHHHHHHHHHHHHHHH
Confidence            8899999998887 99999999999999999999988764

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=100.00  E-value=1.9e-33  Score=200.15  Aligned_cols=165  Identities=27%  Similarity=0.496  Sum_probs=143.1

Q ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEE
Q psy15714         20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCF   98 (205)
Q Consensus        20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   98 (205)
                      +.+.+||+|+|++|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus        11 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~   90 (179)
T 2y8e_A           11 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVA   90 (179)
T ss_dssp             -CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEE
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEE
Confidence            45679999999999999999999999998877777776544 56677889889999999999999999999999999999


Q ss_pred             EEEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEc
Q psy15714         99 LLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLEC  177 (205)
Q Consensus        99 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (205)
                      ++|||++++.++..+. .|+..+.... .++|+++|+||+|+...+            .+..++++.+++..+.. ++++
T Consensus        91 i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~-~~~~  156 (179)
T 2y8e_A           91 VVVYDITNTNSFHQTS-KWIDDVRTERGSDVIIMLVGNKTDLSDKR------------QVSTEEGERKAKELNVM-FIET  156 (179)
T ss_dssp             EEEEETTCHHHHHTHH-HHHHHHHHHHTTSSEEEEEEECGGGGGGC------------CSCHHHHHHHHHHHTCE-EEEE
T ss_pred             EEEEECCCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECCcccccC------------cCCHHHHHHHHHHcCCe-EEEE
Confidence            9999999999999887 7887776654 689999999999997654            67778888888888876 9999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHh
Q psy15714        178 SAKLNEGLDQVFIAAVRSAVK  198 (205)
Q Consensus       178 Sa~~~~~i~~~~~~i~~~~~~  198 (205)
                      ||+++.|++++|++|.+.+..
T Consensus       157 Sa~~~~~i~~l~~~l~~~~~~  177 (179)
T 2y8e_A          157 SAKAGYNVKQLFRRVAAALPG  177 (179)
T ss_dssp             BTTTTBSHHHHHHHHHHTCC-
T ss_pred             eCCCCCCHHHHHHHHHHHHhh
Confidence            999999999999999886643

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=100.00  E-value=1.1e-32  Score=200.95  Aligned_cols=165  Identities=29%  Similarity=0.524  Sum_probs=140.5

Q ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEE
Q psy15714         20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCF   98 (205)
Q Consensus        20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   98 (205)
                      ....+||+|+|.+|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.++..+..+++.+|++
T Consensus         5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   84 (207)
T 1vg8_A            5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC   84 (207)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence            45679999999999999999999999998877777776555 45677788889999999999999999999999999999


Q ss_pred             EEEEECCCcchHHHHHHHHHHHHhhhC-----CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCce
Q psy15714         99 LLCFSIGSTSSYENILSKWYPELKHHC-----PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAE  173 (205)
Q Consensus        99 i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (205)
                      |+|||++++.++..+. .|+..+....     .++|+++|+||+|+...             .+..+++..+++.....+
T Consensus        85 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-------------~~~~~~~~~~~~~~~~~~  150 (207)
T 1vg8_A           85 VLVFDVTAPNTFKTLD-SWRDEFLIQASPRDPENFPFVVLGNKIDLENR-------------QVATKRAQAWCYSKNNIP  150 (207)
T ss_dssp             EEEEETTCHHHHHTHH-HHHHHHHHHHCCSSGGGSCEEEEEECTTSSCC-------------CSCHHHHHHHHHHTTSCC
T ss_pred             EEEEECCCHHHHHHHH-HHHHHHHHhcccccCCCCcEEEEEECCCCccc-------------ccCHHHHHHHHHhcCCce
Confidence            9999999999999886 7887776543     47999999999999732             566778888887444445


Q ss_pred             EEEcccCCCCCHHHHHHHHHHHHHh
Q psy15714        174 YLECSAKLNEGLDQVFIAAVRSAVK  198 (205)
Q Consensus       174 ~~~~Sa~~~~~i~~~~~~i~~~~~~  198 (205)
                      ++++||++|.|++++|++|.+.+..
T Consensus       151 ~~~~Sa~~g~gi~~l~~~l~~~~~~  175 (207)
T 1vg8_A          151 YFETSAKEAINVEQAFQTIARNALK  175 (207)
T ss_dssp             EEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999998765

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=100.00  E-value=1.9e-33  Score=204.98  Aligned_cols=168  Identities=24%  Similarity=0.369  Sum_probs=111.4

Q ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcC--CCCCCCcCccccc-cceeEEECCE--EEEEEEEEcCCCcccccccccCcCC
Q psy15714         20 VHKALKVTTVGDGMVGKTCLLITHTEN--KFPTDYVPTVFDN-YPDTITVDNK--TYDVTLWDTAGQEDYERLRPMSYPN   94 (205)
Q Consensus        20 ~~~~~ki~v~G~~~~GKstli~~~~~~--~~~~~~~~t~~~~-~~~~~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~   94 (205)
                      ....+||+|+|.+|+|||||++++.++  .+...+.+|++.. ....+.+++.  .+.+.+||+||++.+...+..+++.
T Consensus        17 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~   96 (208)
T 2yc2_C           17 ATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNG   96 (208)
T ss_dssp             EEEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCC
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhh
Confidence            467899999999999999999999998  7877778887644 4567778876  8899999999999999999999999


Q ss_pred             CcEEEEEEECCCcchHHHHHHHHHHHHhhhCC----CCCEEEEeeCccccc-CchhhhhhhhhccccccHHHHHHHHHHc
Q psy15714         95 TDCFLLCFSIGSTSSYENILSKWYPELKHHCP----KVPIILVGTKADLRS-ENKTIDKKKAAEVDLVSTSQGKKMRRKI  169 (205)
Q Consensus        95 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (205)
                      +|++++|||++++.++..+. .|+..+.....    ++|+++|+||+|+.. .+            .++.++++.+++.+
T Consensus        97 ~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~------------~v~~~~~~~~~~~~  163 (208)
T 2yc2_C           97 VYYAILVFDVSSMESFESCK-AWFELLKSARPDRERPLRAVLVANKTDLPPQRH------------QVRLDMAQDWATTN  163 (208)
T ss_dssp             CCEEEEEEETTCHHHHHHHH-HHHHHHHHHCSCTTSCCEEEEEEECC-------------------CCCHHHHHHHHHHT
T ss_pred             CcEEEEEEECCCHHHHHHHH-HHHHHHHHhhcccccCCcEEEEEECcccchhhc------------cCCHHHHHHHHHHc
Confidence            99999999999999999987 89998887654    899999999999976 43            67788999999999


Q ss_pred             CCceEEEcccCC-CCCHHHHHHHHHHHHHhhcc
Q psy15714        170 KAAEYLECSAKL-NEGLDQVFIAAVRSAVKKQD  201 (205)
Q Consensus       170 ~~~~~~~~Sa~~-~~~i~~~~~~i~~~~~~~~~  201 (205)
                      +.. ++++||++ +.|++++|++|.+.+.+..+
T Consensus       164 ~~~-~~~~Sa~~~~~gi~~l~~~i~~~~~~~~~  195 (208)
T 2yc2_C          164 TLD-FFDVSANPPGKDADAPFLSIATTFYRNYE  195 (208)
T ss_dssp             TCE-EEECCC-------CHHHHHHHHHHHHHHH
T ss_pred             CCE-EEEeccCCCCcCHHHHHHHHHHHHHHHHH
Confidence            875 99999999 99999999999998876543

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=100.00  E-value=1.1e-32  Score=193.72  Aligned_cols=162  Identities=33%  Similarity=0.562  Sum_probs=143.6

Q ss_pred             eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEE
Q psy15714         22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLC  101 (205)
Q Consensus        22 ~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v  101 (205)
                      +.+||+++|.+|+|||||++++.++.+...+.++....+...+.+++..+.+.+||+||++.+...+..++..+|++++|
T Consensus         2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   81 (166)
T 2ce2_X            2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   81 (166)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence            45899999999999999999999999888778887777667778889999999999999999998888899999999999


Q ss_pred             EECCCcchHHHHHHHHHHHHhhhC--CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEccc
Q psy15714        102 FSIGSTSSYENILSKWYPELKHHC--PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSA  179 (205)
Q Consensus       102 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  179 (205)
                      ||++++.++..+. .|+..+....  .++|+++|+||+|+...             ....++++.+++..+.. ++++||
T Consensus        82 ~d~~~~~~~~~~~-~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~-------------~~~~~~~~~~~~~~~~~-~~~~Sa  146 (166)
T 2ce2_X           82 FAINNTKSFEDIH-QYREQIKRVKDSDDVPMVLVGNKSDLAAR-------------TVESRQAQDLARSYGIP-YIETSA  146 (166)
T ss_dssp             EETTCHHHHHHHH-HHHHHHHHHHTCSCCCEEEEEECTTCSCC-------------CSCHHHHHHHHHHHTCC-EEEECT
T ss_pred             EECCCHHHHHHHH-HHHHHHHHhcCCCCCcEEEEEEchhhhhc-------------ccCHHHHHHHHHHcCCe-EEEecC
Confidence            9999999999986 7888887665  38999999999998763             56677888888888876 999999


Q ss_pred             CCCCCHHHHHHHHHHHHHh
Q psy15714        180 KLNEGLDQVFIAAVRSAVK  198 (205)
Q Consensus       180 ~~~~~i~~~~~~i~~~~~~  198 (205)
                      +++.|++++|+++.+.+.+
T Consensus       147 ~~~~gi~~l~~~l~~~~~~  165 (166)
T 2ce2_X          147 KTRQGVEDAFYTLVREIRQ  165 (166)
T ss_dssp             TTCTTHHHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHh
Confidence            9999999999999988753

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=2.3e-33  Score=198.40  Aligned_cols=163  Identities=29%  Similarity=0.515  Sum_probs=140.9

Q ss_pred             eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEE
Q psy15714         22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLC  101 (205)
Q Consensus        22 ~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v  101 (205)
                      ..+||+++|.+|+|||||++++.++.+...+.++.+..+...+..++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v   81 (172)
T 2erx_A            2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV   81 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEE
Confidence            46899999999999999999999999887778887776666777888889999999999999998888899999999999


Q ss_pred             EECCCcchHHHHHHHHHHHHhhhC---CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcc
Q psy15714        102 FSIGSTSSYENILSKWYPELKHHC---PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECS  178 (205)
Q Consensus       102 ~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  178 (205)
                      ||++++.+++.+. .|+..+.+..   +++|+++|+||+|+...+            .+..+++..+++..+.. ++++|
T Consensus        82 ~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~------------~v~~~~~~~~~~~~~~~-~~~~S  147 (172)
T 2erx_A           82 YSITSRQSLEELK-PIYEQICEIKGDVESIPIMLVGNKCDESPSR------------EVQSSEAEALARTWKCA-FMETS  147 (172)
T ss_dssp             EETTCHHHHHTTH-HHHHHHHHHHC---CCCEEEEEECGGGGGGC------------CSCHHHHHHHHHHHTCE-EEECB
T ss_pred             EECcCHHHHHHHH-HHHHHHHHHhCCCCCCCEEEEEEcccccccc------------ccCHHHHHHHHHHhCCe-EEEec
Confidence            9999999998876 6766666543   589999999999997654            56777888888888875 99999


Q ss_pred             cCCCCCHHHHHHHHHHHHHh
Q psy15714        179 AKLNEGLDQVFIAAVRSAVK  198 (205)
Q Consensus       179 a~~~~~i~~~~~~i~~~~~~  198 (205)
                      |++|.|++++|+++.+.+..
T Consensus       148 a~~~~gi~~l~~~l~~~~~~  167 (172)
T 2erx_A          148 AKLNHNVKELFQELLNLEKR  167 (172)
T ss_dssp             TTTTBSHHHHHHHHHHTCCS
T ss_pred             CCCCcCHHHHHHHHHHHHhh
Confidence            99999999999999886543

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=100.00  E-value=1.6e-33  Score=203.66  Aligned_cols=170  Identities=20%  Similarity=0.222  Sum_probs=137.4

Q ss_pred             cccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCC-----------cCcccccc-ceeE-EECCEEEEEEEEEcCCCccc
Q psy15714         18 KSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDY-----------VPTVFDNY-PDTI-TVDNKTYDVTLWDTAGQEDY   84 (205)
Q Consensus        18 ~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~-----------~~t~~~~~-~~~~-~~~~~~~~~~i~D~~g~~~~   84 (205)
                      ......+||+++|.+|+|||||++.+. +.+...+           .+|.+..+ ...+ .+++..+.+.+||+||++.+
T Consensus         9 ~~~~~~~ki~vvG~~~~GKssL~~~l~-~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~   87 (198)
T 3t1o_A            9 ANREINFKIVYYGPGLSGKTTNLKWIY-SKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFY   87 (198)
T ss_dssp             TTTEEEEEEEEECSTTSSHHHHHHHHH-HTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSC
T ss_pred             hccccccEEEEECCCCCCHHHHHHHHH-hhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHH
Confidence            345678999999999999999996554 4444432           33444333 2333 56778899999999999999


Q ss_pred             ccccccCcCCCcEEEEEEECC------CcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhcccccc
Q psy15714         85 ERLRPMSYPNTDCFLLCFSIG------STSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVS  158 (205)
Q Consensus        85 ~~~~~~~~~~~~~~i~v~d~~------~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~  158 (205)
                      +..+..+++.+|++++|||++      +.+++..+. .|+..+.....++|+++|+||+|+..              .++
T Consensus        88 ~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~-~~l~~~~~~~~~~piilv~NK~Dl~~--------------~~~  152 (198)
T 3t1o_A           88 NASRKLILRGVDGIVFVADSAPNRLRANAESMRNMR-ENLAEYGLTLDDVPIVIQVNKRDLPD--------------ALP  152 (198)
T ss_dssp             SHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHH-HHHHHTTCCTTSSCEEEEEECTTSTT--------------CCC
T ss_pred             HHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHH-HHHHhhccccCCCCEEEEEEchhccc--------------ccC
Confidence            999999999999999999999      556777776 68777755557999999999999965              467


Q ss_pred             HHHHHHHHHHcCCceEEEcccCCCCCHHHHHHHHHHHHHhhcccC
Q psy15714        159 TSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQDKS  203 (205)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~~~  203 (205)
                      .++++.+++..+..+++++||++|+|++++|+++.+.+.++.+++
T Consensus       153 ~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~~~~  197 (198)
T 3t1o_A          153 VEMVRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVLARVAGG  197 (198)
T ss_dssp             HHHHHHHHCTTCCSCEEECBGGGTBTHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHhcCCceEEEEecCCCcCHHHHHHHHHHHHHHHhhcC
Confidence            788999999999845999999999999999999999998877653

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=100.00  E-value=2.3e-32  Score=198.57  Aligned_cols=165  Identities=22%  Similarity=0.437  Sum_probs=140.5

Q ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEE----------------------------
Q psy15714         20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKT----------------------------   70 (205)
Q Consensus        20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~----------------------------   70 (205)
                      ..+.+||+|+|.+|+|||||+++|.++.+...+.++.+..+ ...+.+++..                            
T Consensus         4 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (208)
T 3clv_A            4 KKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQH   83 (208)
T ss_dssp             CCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC------------------------------
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccc
Confidence            35679999999999999999999999998887788776555 3445555544                            


Q ss_pred             ---------EEEEEEEcCCCcccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCccccc
Q psy15714         71 ---------YDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS  141 (205)
Q Consensus        71 ---------~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  141 (205)
                               ..+.+||+||++.+...+..+++.+|++++|||++++.++..+. .|+..+..... .|+++|+||+| ..
T Consensus        84 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~-~~~~~i~~~~~-~piilv~NK~D-~~  160 (208)
T 3clv_A           84 NNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAK-TWVNQLKISSN-YIIILVANKID-KN  160 (208)
T ss_dssp             -CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHH-HHHHHHHHHSC-CEEEEEEECTT-CC
T ss_pred             ccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHH-HHHHHHHhhCC-CcEEEEEECCC-cc
Confidence                     88999999999999999889999999999999999999999987 78888877654 99999999999 33


Q ss_pred             CchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCCCCCHHHHHHHHHHHHHhhc
Q psy15714        142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQ  200 (205)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~  200 (205)
                      .+            .+..++++.+++..+.. ++++||+++.|++++|++|.+.+.++.
T Consensus       161 ~~------------~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~l~~~l~~~~~~~~  206 (208)
T 3clv_A          161 KF------------QVDILEVQKYAQDNNLL-FIQTSAKTGTNIKNIFYMLAEEIYKNI  206 (208)
T ss_dssp             -C------------CSCHHHHHHHHHHTTCE-EEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred             cc------------cCCHHHHHHHHHHcCCc-EEEEecCCCCCHHHHHHHHHHHHHHhc
Confidence            22            67788899999998885 999999999999999999999887653

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=100.00  E-value=2.6e-32  Score=199.82  Aligned_cols=167  Identities=26%  Similarity=0.603  Sum_probs=144.0

Q ss_pred             ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcE
Q psy15714         19 SVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDC   97 (205)
Q Consensus        19 ~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   97 (205)
                      .....+||+|+|++|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.++..+..+++.+|+
T Consensus        16 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   95 (213)
T 3cph_A           16 SYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMG   95 (213)
T ss_dssp             ----CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSE
T ss_pred             CCCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCE
Confidence            345679999999999999999999999998877777777665 4567788988999999999999999999999999999


Q ss_pred             EEEEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEE
Q psy15714         98 FLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLE  176 (205)
Q Consensus        98 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (205)
                      +++|||++++.++..+. .|+..+.... .++|+++|+||+|+...             .+..+++..+++.+++. +++
T Consensus        96 ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~~-------------~~~~~~~~~~~~~~~~~-~~~  160 (213)
T 3cph_A           96 IILVYDVTDERTFTNIK-QWFKTVNEHANDEAQLLLVGNKSDMETR-------------VVTADQGEALAKELGIP-FIE  160 (213)
T ss_dssp             EEEEEETTCHHHHHTHH-HHHHHHHHHTTTCSEEEEEEECTTCSSC-------------CSCHHHHHHHHHHHTCC-EEE
T ss_pred             EEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECCCCccc-------------ccCHHHHHHHHHHcCCE-EEE
Confidence            99999999999999887 7888887766 57999999999999432             56777888888888876 999


Q ss_pred             cccCCCCCHHHHHHHHHHHHHhhc
Q psy15714        177 CSAKLNEGLDQVFIAAVRSAVKKQ  200 (205)
Q Consensus       177 ~Sa~~~~~i~~~~~~i~~~~~~~~  200 (205)
                      +||+++.|++++|.+|.+.+.+..
T Consensus       161 ~Sa~~~~gi~~l~~~l~~~~~~~~  184 (213)
T 3cph_A          161 SSAKNDDNVNEIFFTLAKLIQEKI  184 (213)
T ss_dssp             CBTTTTBSSHHHHHHHHHHHHHHH
T ss_pred             EeCCCCCCHHHHHHHHHHHHHHHH
Confidence            999999999999999999887653

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=100.00  E-value=4.2e-32  Score=211.23  Aligned_cols=179  Identities=53%  Similarity=0.969  Sum_probs=157.3

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEE
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLL  100 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~  100 (205)
                      ...+||+++|.+|+|||||++++.++.+...+.++++..+...+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus       153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~  232 (332)
T 2wkq_A          153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI  232 (332)
T ss_dssp             TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEE
T ss_pred             cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEE
Confidence            45689999999999999999999999998888888888777778889999999999999999999999999999999999


Q ss_pred             EEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccC
Q psy15714        101 CFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAK  180 (205)
Q Consensus       101 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  180 (205)
                      |||++++.++..+...|+..+....+++|+++|+||+|+...............+.++.+++..+++..+..+++++||+
T Consensus       233 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~  312 (332)
T 2wkq_A          233 CFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL  312 (332)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred             EEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecCC
Confidence            99999999999987689999988878999999999999976544333333333457889999999999998669999999


Q ss_pred             CCCCHHHHHHHHHHHHHhh
Q psy15714        181 LNEGLDQVFIAAVRSAVKK  199 (205)
Q Consensus       181 ~~~~i~~~~~~i~~~~~~~  199 (205)
                      +|+|++++|+++.+.++..
T Consensus       313 ~~~gi~~l~~~l~~~~~~~  331 (332)
T 2wkq_A          313 TQRGLKTVFDEAIRAVLCP  331 (332)
T ss_dssp             TCTTHHHHHHHHHHHHHC-
T ss_pred             CCcCHHHHHHHHHHHHhcC
Confidence            9999999999999988653

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=100.00  E-value=1.1e-31  Score=193.91  Aligned_cols=165  Identities=25%  Similarity=0.360  Sum_probs=131.3

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcC--CCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcc-cccccccCcCCCcE
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTEN--KFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQED-YERLRPMSYPNTDC   97 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~~~~~~~~~~   97 (205)
                      ...+||+++|.+|+|||||+++|.+.  .+...+.++..+.+...+.+++..+.+.+||++|... ++.+...+++.+|+
T Consensus         4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~   83 (192)
T 2cjw_A            4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA   83 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCE
Confidence            34689999999999999999999963  3444444433333456778899999999999999876 55566777888999


Q ss_pred             EEEEEECCCcchHHHHHHHHHHHHhhhC--CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEE
Q psy15714         98 FLLCFSIGSTSSYENILSKWYPELKHHC--PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYL  175 (205)
Q Consensus        98 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (205)
                      +++|||++++.+|+.+. .|...+....  .++|+++|+||+|+...+            .+..++++.++...+.. ++
T Consensus        84 ~i~v~dv~~~~s~~~~~-~~~~~l~~~~~~~~~piilV~NK~Dl~~~r------------~v~~~~~~~~a~~~~~~-~~  149 (192)
T 2cjw_A           84 YLIVYSITDRASFEKAS-ELRIQLRRARQTEDIPIILVGNKSDLVRXR------------EVSVSEGRAXAVVFDXK-FI  149 (192)
T ss_dssp             EEEEEETTCHHHHHHHH-HHHHHHHHHTTTSCCCEEEEEECTTCGGGC------------CSCHHHHHHHHHHTTCE-EE
T ss_pred             EEEEEECCCHHHHHHHH-HHHHHHHHhhCCCCCeEEEEEechhhhccc------------cccHHHHHHHHHHhCCc-eE
Confidence            99999999999999987 7877776543  589999999999987543            66777888888888765 99


Q ss_pred             EcccCCCCCHHHHHHHHHHHHHhh
Q psy15714        176 ECSAKLNEGLDQVFIAAVRSAVKK  199 (205)
Q Consensus       176 ~~Sa~~~~~i~~~~~~i~~~~~~~  199 (205)
                      ++||++|.|++++|+++.+.+...
T Consensus       150 e~SA~~g~~v~~lf~~l~~~~~~~  173 (192)
T 2cjw_A          150 ETSAAVQHNVKELFEGIVRQVRLR  173 (192)
T ss_dssp             ECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             EeccccCCCHHHHHHHHHHHHHhh
Confidence            999999999999999999988654

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.2e-32  Score=199.46  Aligned_cols=163  Identities=26%  Similarity=0.489  Sum_probs=141.9

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEE
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLL  100 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~  100 (205)
                      ...+||+++|.+|+|||||++++.++.+...+.++.+..+...+..++..+.+.+||+||++.+...+..+++.+|++++
T Consensus         6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   85 (199)
T 2gf0_A            6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFIL   85 (199)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEEE
T ss_pred             CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEEE
Confidence            45689999999999999999999999988888888777666677788889999999999999999888889999999999


Q ss_pred             EEECCCcchHHHHHHHHHHHHhhhC---CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEc
Q psy15714        101 CFSIGSTSSYENILSKWYPELKHHC---PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLEC  177 (205)
Q Consensus       101 v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (205)
                      |||++++.++..+. .|+..+....   .++|+++|+||+|+...             .+..+++..++..++.. ++++
T Consensus        86 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~piilv~nK~Dl~~~-------------~~~~~~~~~~~~~~~~~-~~~~  150 (199)
T 2gf0_A           86 VFSVTSKQSLEELG-PIYKLIVQIKGSVEDIPVMLVGNKCDETQR-------------EVDTREAQAVAQEWKCA-FMET  150 (199)
T ss_dssp             EEETTCHHHHHTTH-HHHHHHHHHHSCGGGSCEEEEEECTTCSSC-------------SSCHHHHHHHHHHHTCE-EEEC
T ss_pred             EEECcCHHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccCCcc-------------ccCHHHHHHHHHHhCCe-EEEE
Confidence            99999999998887 5766665532   47999999999999753             56677888888888876 9999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHh
Q psy15714        178 SAKLNEGLDQVFIAAVRSAVK  198 (205)
Q Consensus       178 Sa~~~~~i~~~~~~i~~~~~~  198 (205)
                      ||++|.|++++|+++.+.+..
T Consensus       151 Sa~~~~gi~~l~~~l~~~~~~  171 (199)
T 2gf0_A          151 SAKMNYNVKELFQELLTLETR  171 (199)
T ss_dssp             BTTTTBSHHHHHHHHHHHCSS
T ss_pred             ecCCCCCHHHHHHHHHHHHhh
Confidence            999999999999999987644

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=100.00  E-value=5.3e-32  Score=196.07  Aligned_cols=172  Identities=15%  Similarity=0.175  Sum_probs=127.2

Q ss_pred             cccceeeEEEEECCCCCCHHHHHHHHhcCCCCC-CCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCc
Q psy15714         18 KSVHKALKVTTVGDGMVGKTCLLITHTENKFPT-DYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTD   96 (205)
Q Consensus        18 ~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   96 (205)
                      .......||+|+|.+|+|||||+++|.++.+.. .+.+|.+... ..+.  +..+.+.+||+||++.++..+..+++.+|
T Consensus        12 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~-~~~~--~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   88 (199)
T 4bas_A           12 GQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNV-ETFE--KGRVAFTVFDMGGAKKFRGLWETYYDNID   88 (199)
T ss_dssp             ----CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEE-EEEE--ETTEEEEEEEECCSGGGGGGGGGGCTTCS
T ss_pred             cCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeE-EEEE--eCCEEEEEEECCCCHhHHHHHHHHHhcCC
Confidence            456778999999999999999999999999887 7778776332 2333  34478999999999999999999999999


Q ss_pred             EEEEEEECCCcchHHHHHHHHHHHHhhhC---------CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHH-HH
Q psy15714         97 CFLLCFSIGSTSSYENILSKWYPELKHHC---------PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKK-MR  166 (205)
Q Consensus        97 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---------~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-~~  166 (205)
                      ++|+|||++++.++..+. .|+..+....         .++|+++|+||+|+.......         .+....... ++
T Consensus        89 ~ii~v~D~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~---------~~~~~~~~~~~~  158 (199)
T 4bas_A           89 AVIFVVDSSDHLRLCVVK-SEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAA---------ELVEILDLTTLM  158 (199)
T ss_dssp             EEEEEEETTCGGGHHHHH-HHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHH---------HHHHHHTHHHHH
T ss_pred             EEEEEEECCcHHHHHHHH-HHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHH---------HHHHHhcchhhc
Confidence            999999999999999987 5655554331         289999999999997653111         111111111 12


Q ss_pred             HHcCCceEEEcccCCCCCHHHHHHHHHHHHHhhcccC
Q psy15714        167 RKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQDKS  203 (205)
Q Consensus       167 ~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~~~  203 (205)
                      +..+. +++++||++|+|++++|++|.+.+.+..+++
T Consensus       159 ~~~~~-~~~~~Sa~~g~gv~~l~~~l~~~~~~~~~~~  194 (199)
T 4bas_A          159 GDHPF-VIFASNGLKGTGVHEGFSWLQETASRQSGKA  194 (199)
T ss_dssp             TTSCE-EEEECBTTTTBTHHHHHHHHHHHHHHHC---
T ss_pred             cCCee-EEEEeeCCCccCHHHHHHHHHHHHHHHhccc
Confidence            33444 4999999999999999999999998876654

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=100.00  E-value=4.8e-35  Score=213.27  Aligned_cols=177  Identities=55%  Similarity=1.002  Sum_probs=151.1

Q ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEE
Q psy15714         20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFL   99 (205)
Q Consensus        20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   99 (205)
                      ..+.+||+++|.+|+|||||++++.++.+...+.++.+..+...+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus        27 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii  106 (204)
T 3th5_A           27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL  106 (204)
Confidence            35789999999999999999999999998888888887777767778888889999999999999999999999999999


Q ss_pred             EEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEccc
Q psy15714        100 LCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSA  179 (205)
Q Consensus       100 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  179 (205)
                      +|||++++.++..+...|+..+....+++|+++|+||+|+...............+.+..+++..+++..+..+++++||
T Consensus       107 lv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vSA  186 (204)
T 3th5_A          107 ICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA  186 (204)
Confidence            99999999999998667988888776789999999999997654333322222333567788888998888855999999


Q ss_pred             CCCCCHHHHHHHHHHHH
Q psy15714        180 KLNEGLDQVFIAAVRSA  196 (205)
Q Consensus       180 ~~~~~i~~~~~~i~~~~  196 (205)
                      ++|+|++++|+++.+.+
T Consensus       187 ~~g~gi~~l~~~l~~~i  203 (204)
T 3th5_A          187 LTQRGLKTVFDEAIRAV  203 (204)
Confidence            99999999999998765

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=100.00  E-value=5.9e-33  Score=204.60  Aligned_cols=169  Identities=28%  Similarity=0.530  Sum_probs=144.0

Q ss_pred             ccccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCC
Q psy15714         17 SKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNT   95 (205)
Q Consensus        17 ~~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~   95 (205)
                      .......+||+++|.+|+|||||+++|..+.+...+.++.+... .....+++..+.+.+||+||++.+...+..+++.+
T Consensus         9 ~~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   88 (221)
T 3gj0_A            9 QGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQA   88 (221)
T ss_dssp             TTCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTC
T ss_pred             CCCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcC
Confidence            34456789999999999999999999888877777777776555 45677888999999999999999999999999999


Q ss_pred             cEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEE
Q psy15714         96 DCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYL  175 (205)
Q Consensus        96 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (205)
                      |++++|||++++.++..+. .|+..+.....++|+++|+||+|+....             . ..+...+++..+.. ++
T Consensus        89 ~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-------------~-~~~~~~~~~~~~~~-~~  152 (221)
T 3gj0_A           89 QCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDRK-------------V-KAKSIVFHRKKNLQ-YY  152 (221)
T ss_dssp             CEEEEEEETTCHHHHHTHH-HHHHHHHHHSTTCCEEEEEECTTSSSCS-------------S-CGGGCCHHHHHTCE-EE
T ss_pred             CEEEEEEECCCHHHHHHHH-HHHHHHHHhCCCCCEEEEEECCcccccc-------------c-cHHHHHHHHHcCCE-EE
Confidence            9999999999999999987 8999998888899999999999997643             1 12444566667766 99


Q ss_pred             EcccCCCCCHHHHHHHHHHHHHhhcc
Q psy15714        176 ECSAKLNEGLDQVFIAAVRSAVKKQD  201 (205)
Q Consensus       176 ~~Sa~~~~~i~~~~~~i~~~~~~~~~  201 (205)
                      ++||++|.|++++|+++.+.+.....
T Consensus       153 ~~Sa~~~~gi~~l~~~l~~~l~~~~~  178 (221)
T 3gj0_A          153 DISAKSNYNFEKPFLWLARKLIGDPN  178 (221)
T ss_dssp             ECBGGGTBTTTHHHHHHHHHHHTCTT
T ss_pred             EEeCCCCCCHHHHHHHHHHHHHhCcc
Confidence            99999999999999999999877543

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=100.00  E-value=5.2e-34  Score=207.06  Aligned_cols=165  Identities=27%  Similarity=0.548  Sum_probs=135.8

Q ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEE
Q psy15714         20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCF   98 (205)
Q Consensus        20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   98 (205)
                      ....+||+|+|.+|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.++..+..+++.+|++
T Consensus        30 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~  109 (199)
T 3l0i_B           30 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI  109 (199)
T ss_dssp             CSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEE
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEE
Confidence            35679999999999999999999999988777677766555 45677889999999999999999999999999999999


Q ss_pred             EEEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEc
Q psy15714         99 LLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLEC  177 (205)
Q Consensus        99 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (205)
                      ++|||++++.+++.+. .|+..+.... .++|+++|+||+|+...+            .+..++++.+++.++.. ++++
T Consensus       110 i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~------------~v~~~~~~~~~~~~~~~-~~~v  175 (199)
T 3l0i_B          110 IVVYDVTDQESFNNVK-QWLQEIDRYASENVNKLLVGNKCDLTTKK------------VVDYTTAKEFADSLGIP-FLET  175 (199)
T ss_dssp             EECC-CCCSHHHHHHH-HHHHHHHSCC-CCSEEEEC-CCSSCC--C------------CCCSCC-CHHHHTTTCC-BCCC
T ss_pred             EEEEECCCHHHHHHHH-HHHHHHHHhccCCCCEEEEEECccCCccc------------cCCHHHHHHHHHHcCCe-EEEE
Confidence            9999999999999987 7998887766 589999999999997654            56666778888888877 9999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHh
Q psy15714        178 SAKLNEGLDQVFIAAVRSAVK  198 (205)
Q Consensus       178 Sa~~~~~i~~~~~~i~~~~~~  198 (205)
                      ||+++.|++++|++|.+.+..
T Consensus       176 SA~~g~gv~~l~~~l~~~l~~  196 (199)
T 3l0i_B          176 SAKNATNVEQSFMTMAAEIKK  196 (199)
T ss_dssp             CC---HHHHHHHHHHTTTTTT
T ss_pred             ECCCCCCHHHHHHHHHHHHHH
Confidence            999999999999999877654

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=99.98  E-value=2.2e-32  Score=201.09  Aligned_cols=168  Identities=24%  Similarity=0.388  Sum_probs=139.7

Q ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccce-eEEE-CCEEEEEEEEEcCCCcccccccccCcCCCcE
Q psy15714         20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPD-TITV-DNKTYDVTLWDTAGQEDYERLRPMSYPNTDC   97 (205)
Q Consensus        20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~-~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   97 (205)
                      ....+||+++|.+|+|||||++++.++.+...+.++.+..... .... ++..+.+.+||+||++.+...+..++..+|+
T Consensus         8 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   87 (218)
T 4djt_A            8 RELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASG   87 (218)
T ss_dssp             --CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSE
T ss_pred             ccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCE
Confidence            4577999999999999999999999998877767776655532 2323 3445889999999999999999999999999


Q ss_pred             EEEEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEE
Q psy15714         98 FLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLE  176 (205)
Q Consensus        98 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (205)
                      +++|||++++.++..+. .|+..+.... .++|+++|+||+|+...+            .+..+++..+++..+.. +++
T Consensus        88 ~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~-~~~  153 (218)
T 4djt_A           88 AILFFDVTSRITCQNLA-RWVKEFQAVVGNEAPIVVCANKIDIKNRQ------------KISKKLVMEVLKGKNYE-YFE  153 (218)
T ss_dssp             EEEEEETTCHHHHHTHH-HHHHHHHHHHCSSSCEEEEEECTTCC----------------CCHHHHHHHTTTCCCE-EEE
T ss_pred             EEEEEeCCCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECCCCcccc------------ccCHHHHHHHHHHcCCc-EEE
Confidence            99999999999999987 8988887765 469999999999997654            67778888888888876 999


Q ss_pred             cccCCCCCHHHHHHHHHHHHHhhcc
Q psy15714        177 CSAKLNEGLDQVFIAAVRSAVKKQD  201 (205)
Q Consensus       177 ~Sa~~~~~i~~~~~~i~~~~~~~~~  201 (205)
                      +||++|.|++++|+++.+.+....+
T Consensus       154 ~Sa~~g~gv~~l~~~l~~~~~~~~~  178 (218)
T 4djt_A          154 ISAKTAHNFGLPFLHLARIFTGRPD  178 (218)
T ss_dssp             EBTTTTBTTTHHHHHHHHHHHCCTT
T ss_pred             EecCCCCCHHHHHHHHHHHHhcccc
Confidence            9999999999999999999876543

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.98  E-value=2.8e-31  Score=189.84  Aligned_cols=166  Identities=19%  Similarity=0.229  Sum_probs=121.3

Q ss_pred             CCCccccccccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccc
Q psy15714         10 GGDKDVKSKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRP   89 (205)
Q Consensus        10 ~~~~~~~~~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~   89 (205)
                      ............+.+||+++|.+|+|||||++++.++.+ ..+.++.+.. ...+.+++  +.+.+||+||++.++..+.
T Consensus         8 ~~~~~~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~   83 (181)
T 2h17_A            8 HHHSSGLVPRGSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSN-VEEIVINN--TRFLMWDIGGQESLRSSWN   83 (181)
T ss_dssp             -------------CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSS-CEEEEETT--EEEEEEEESSSGGGTCGGG
T ss_pred             ccccCCccCCCCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCcee-eEEEEECC--EEEEEEECCCCHhHHHHHH
Confidence            333334455667889999999999999999999999988 4555666543 34556666  7899999999999999999


Q ss_pred             cCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhh--CCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHH-
Q psy15714         90 MSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHH--CPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMR-  166 (205)
Q Consensus        90 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~-  166 (205)
                      .+++.+|++++|||++++.++..+. .|+..+...  ..++|+++|+||+|+....              ..++..... 
T Consensus        84 ~~~~~~d~ii~v~D~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--------------~~~~i~~~~~  148 (181)
T 2h17_A           84 TYYTNTEFVIVVVDSTDRERISVTR-EELYKMLAHEDLRKAGLLIFANKQDVKECM--------------TVAEISQFLK  148 (181)
T ss_dssp             GGGTTCCEEEEEEETTCTTTHHHHH-HHHHHHHTCGGGTTCEEEEEEECTTSTTCC--------------CHHHHHHHTT
T ss_pred             HHhccCCEEEEEEECCCHHHHHHHH-HHHHHHHhChhhCCCeEEEEEECCCcccCC--------------CHHHHHHHhC
Confidence            9999999999999999999999987 555555443  2689999999999997632              122222221 


Q ss_pred             ----HHcCCceEEEcccCCCCCHHHHHHHHHHH
Q psy15714        167 ----RKIKAAEYLECSAKLNEGLDQVFIAAVRS  195 (205)
Q Consensus       167 ----~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  195 (205)
                          +..+. +++++||++|+|++++|++|.+.
T Consensus       149 ~~~~~~~~~-~~~~~Sa~~g~gi~~l~~~l~~~  180 (181)
T 2h17_A          149 LTSIKDHQW-HIQACCALTGEGLCQGLEWMMSR  180 (181)
T ss_dssp             GGGCCSSCE-EEEECBTTTTBTHHHHHHHHHTC
T ss_pred             cccccCCce-EEEEccCCCCcCHHHHHHHHHhh
Confidence                11222 59999999999999999998764

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.98  E-value=3.6e-31  Score=190.41  Aligned_cols=169  Identities=17%  Similarity=0.255  Sum_probs=125.4

Q ss_pred             ccccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCc
Q psy15714         17 SKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTD   96 (205)
Q Consensus        17 ~~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   96 (205)
                      .....+.+||+|+|.+|+|||||++++.++.+...+.+|.+..+. .+...  .+.+.+||+||++.++..+..+++.+|
T Consensus        16 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~d   92 (188)
T 1zd9_A           16 PRGSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR-KITKG--NVTIKLWDIGGQPRFRSMWERYCRGVS   92 (188)
T ss_dssp             ---CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE-EEEET--TEEEEEEEECCSHHHHTTHHHHHTTCS
T ss_pred             ccCCCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEE-EEEeC--CEEEEEEECCCCHhHHHHHHHHHccCC
Confidence            344567899999999999999999999999988777777766543 23334  478999999999999999888999999


Q ss_pred             EEEEEEECCCcchHHHHHHHHHHHHhhh--CCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceE
Q psy15714         97 CFLLCFSIGSTSSYENILSKWYPELKHH--CPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEY  174 (205)
Q Consensus        97 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (205)
                      ++++|||++++.++..+. .|+..+...  ..++|+++|+||+|+.......+         +........+...+ .++
T Consensus        93 ~ii~v~D~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~---------~~~~~~~~~~~~~~-~~~  161 (188)
T 1zd9_A           93 AIVYMVDAADQEKIEASK-NELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKE---------LIEKMNLSAIQDRE-ICC  161 (188)
T ss_dssp             EEEEEEETTCGGGHHHHH-HHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHH---------HHHHTTGGGCCSSC-EEE
T ss_pred             EEEEEEECCCHHHHHHHH-HHHHHHHhCcccCCCCEEEEEECCCCccCCCHHH---------HHHHhChhhhccCC-eeE
Confidence            999999999999999987 565555432  26899999999999976421100         00000000111122 348


Q ss_pred             EEcccCCCCCHHHHHHHHHHHHHhh
Q psy15714        175 LECSAKLNEGLDQVFIAAVRSAVKK  199 (205)
Q Consensus       175 ~~~Sa~~~~~i~~~~~~i~~~~~~~  199 (205)
                      +++||++|.|++++|++|.+.+...
T Consensus       162 ~~~SA~~g~gv~~l~~~l~~~~~~~  186 (188)
T 1zd9_A          162 YSISCKEKDNIDITLQWLIQHSKSR  186 (188)
T ss_dssp             EECCTTTCTTHHHHHHHHHHTCC--
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHhh
Confidence            9999999999999999999876543

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.97  E-value=3.8e-31  Score=191.89  Aligned_cols=156  Identities=20%  Similarity=0.274  Sum_probs=119.7

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEE
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLL  100 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~  100 (205)
                      .+.+||+++|++|+|||||++++.++.+. .+.+|.+.. ...+.+++  +.+.+||+||++.++..+..+++.+|++++
T Consensus        23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~   98 (198)
T 1f6b_A           23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT-SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVF   98 (198)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS-CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCce-eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEEE
Confidence            45689999999999999999999998874 456666554 35666777  789999999999999999999999999999


Q ss_pred             EEECCCcchHHHHHHHHHHHHhhh--CCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHc---------
Q psy15714        101 CFSIGSTSSYENILSKWYPELKHH--CPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKI---------  169 (205)
Q Consensus       101 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------  169 (205)
                      |||++++.++..+. .|+..+...  ..++|+++|+||+|+..              .++.+++..+....         
T Consensus        99 v~D~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~NK~Dl~~--------------~~~~~~~~~~~~~~~~~~~~~~~  163 (198)
T 1f6b_A           99 LVDCADHERLLESK-EELDSLMTDETIANVPILILGNKIDRPE--------------AISEERLREMFGLYGQTTGKGSV  163 (198)
T ss_dssp             EEETTCGGGHHHHH-HHHHHHHTCGGGTTSCEEEEEECTTSTT--------------CCCHHHHHHHHTCTTTCCCSSCC
T ss_pred             EEECCCHHHHHHHH-HHHHHHHhCcccCCCcEEEEEECCCccc--------------cCCHHHHHHHhCccccccccccc
Confidence            99999999999987 676666543  26899999999999975              34455555554422         


Q ss_pred             -------CCceEEEcccCCCCCHHHHHHHHHHH
Q psy15714        170 -------KAAEYLECSAKLNEGLDQVFIAAVRS  195 (205)
Q Consensus       170 -------~~~~~~~~Sa~~~~~i~~~~~~i~~~  195 (205)
                             ...+++++||++|+|++++|+++.+.
T Consensus       164 ~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~  196 (198)
T 1f6b_A          164 SLKELNARPLEVFMCSVLKRQGYGEGFRWMAQY  196 (198)
T ss_dssp             CTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred             ccccccCceEEEEEEECCCCCCHHHHHHHHHHh
Confidence                   23459999999999999999999764

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.97  E-value=4.5e-31  Score=190.09  Aligned_cols=163  Identities=18%  Similarity=0.216  Sum_probs=124.9

Q ss_pred             cccceeeEEEEECCCCCCHHHHHHHHhcCC-CCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCc
Q psy15714         18 KSVHKALKVTTVGDGMVGKTCLLITHTENK-FPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTD   96 (205)
Q Consensus        18 ~~~~~~~ki~v~G~~~~GKstli~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   96 (205)
                      ....+.+||+++|.+|+|||||++++.++. +...+.+|.+. ....+.+++  +.+.+||+||++.++..+..+++.+|
T Consensus        16 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~-~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d   92 (190)
T 2h57_A           16 PRGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGF-SIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQ   92 (190)
T ss_dssp             -----CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSE-EEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCS
T ss_pred             cCCCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccce-eEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCC
Confidence            345678999999999999999999999887 55566666652 234555565  68999999999999999999999999


Q ss_pred             EEEEEEECCCcchHHHHHHHHHHHHhhhC----CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHH--Hc-
Q psy15714         97 CFLLCFSIGSTSSYENILSKWYPELKHHC----PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRR--KI-  169 (205)
Q Consensus        97 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-  169 (205)
                      ++++|||++++.++..+. .|+..+....    .++|+++|+||+|+...              ...++......  .. 
T Consensus        93 ~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~  157 (190)
T 2h57_A           93 AIIFVIDSSDRLRMVVAK-EELDTLLNHPDIKHRRIPILFFANKMDLRDA--------------VTSVKVSQLLCLENIK  157 (190)
T ss_dssp             EEEEEEETTCHHHHHHHH-HHHHHHHHSTTTTTSCCCEEEEEECTTSTTC--------------CCHHHHHHHHTGGGCC
T ss_pred             EEEEEEECCCHHHHHHHH-HHHHHHHhChhhccCCCeEEEEEeCcCcccC--------------CCHHHHHHHhChhhcc
Confidence            999999999999999987 5666554432    48999999999999753              33344444442  11 


Q ss_pred             -CCceEEEcccCCCCCHHHHHHHHHHHHHh
Q psy15714        170 -KAAEYLECSAKLNEGLDQVFIAAVRSAVK  198 (205)
Q Consensus       170 -~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  198 (205)
                       ...+++++||++|.|++++|++|.+.+.+
T Consensus       158 ~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  187 (190)
T 2h57_A          158 DKPWHICASDAIKGEGLQEGVDWLQDQIQT  187 (190)
T ss_dssp             SSCEEEEECBTTTTBTHHHHHHHHHHHC--
T ss_pred             CCceEEEEccCCCCcCHHHHHHHHHHHHHH
Confidence             12359999999999999999999987644

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.97  E-value=8.1e-32  Score=195.07  Aligned_cols=171  Identities=12%  Similarity=0.138  Sum_probs=124.1

Q ss_pred             ccccccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc---ceeEEE-CCEEEEEEEEEcCCCccccccc--
Q psy15714         15 VKSKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY---PDTITV-DNKTYDVTLWDTAGQEDYERLR--   88 (205)
Q Consensus        15 ~~~~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~---~~~~~~-~~~~~~~~i~D~~g~~~~~~~~--   88 (205)
                      .......+.+||+++|.+|+|||||++++.+.. ...  ++.+...   .....+ ++..+.+.+||+||++.|....  
T Consensus        12 ~~~~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~   88 (196)
T 3llu_A           12 ENLYFQGSKPRILLMGLRRSGKSSIQKVVFHKM-SPN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFD   88 (196)
T ss_dssp             --------CCEEEEEESTTSSHHHHHHHHHSCC-CGG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCC
T ss_pred             CCCcccCcceEEEEECCCCCCHHHHHHHHHhcC-CCc--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhh
Confidence            344566788999999999999999999877643 332  3333333   122233 3566889999999999987776  


Q ss_pred             -ccCcCCCcEEEEEEECCCc--chHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHH
Q psy15714         89 -PMSYPNTDCFLLCFSIGST--SSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKM  165 (205)
Q Consensus        89 -~~~~~~~~~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (205)
                       ..+++++|++|+|||++++  +++..+. .|+..+....+++|+++|+||+|+........     ..+.+..+++..+
T Consensus        89 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~-----~~~~v~~~~~~~~  162 (196)
T 3llu_A           89 YEMIFRGTGALIYVIDAQDDYMEALTRLH-ITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIE-----TQRDIHQRANDDL  162 (196)
T ss_dssp             HHHHHHTCSEEEEEEETTSCCHHHHHHHH-HHHHHHHHHCTTCEEEEEEECGGGSCHHHHHH-----HHHHHHHHHHHHH
T ss_pred             cccccccCCEEEEEEECCCchHHHHHHHH-HHHHHHHhcCCCCcEEEEEeccccCchhhhhH-----HHhHHHHHHHHHH
Confidence             7899999999999999997  6666665 67776655667999999999999875432111     1125666777888


Q ss_pred             HH----HcCCceEEEcccCCCCCHHHHHHHHHHHH
Q psy15714        166 RR----KIKAAEYLECSAKLNEGLDQVFIAAVRSA  196 (205)
Q Consensus       166 ~~----~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~  196 (205)
                      ++    ..++. ++++||++ +|++++|..+++.+
T Consensus       163 ~~~~~~~~~~~-~~e~Sa~~-~~v~~~f~~l~~~l  195 (196)
T 3llu_A          163 ADAGLEKLHLS-FYLTSIYD-HSIFEAFSKVVQKL  195 (196)
T ss_dssp             HHTTCTTSCEE-EEEECTTS-THHHHHHHHHHHHT
T ss_pred             HHhhhhcCCcc-eEEEEech-hhHHHHHHHHHHHh
Confidence            87    55655 99999999 99999999998865

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.97  E-value=1.5e-30  Score=187.49  Aligned_cols=156  Identities=19%  Similarity=0.283  Sum_probs=122.9

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEE
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLL  100 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~  100 (205)
                      .+.+||+++|++|+|||||++++.++.+. .+.+|.+.. ...+.+++  +.+.+||+||++.++..+..+++.+|++++
T Consensus        21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~   96 (190)
T 1m2o_B           21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPT-SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVF   96 (190)
T ss_dssp             ---CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCE-EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCC-eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence            45689999999999999999999998875 345665553 34666777  789999999999999999999999999999


Q ss_pred             EEECCCcchHHHHHHHHHHHHhhh--CCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHH----------
Q psy15714        101 CFSIGSTSSYENILSKWYPELKHH--CPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRK----------  168 (205)
Q Consensus       101 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------  168 (205)
                      |||++++.++..+. .|+..+...  ..+.|+++|+||+|+...              ++.+++.+..+.          
T Consensus        97 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~NK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~~~~  161 (190)
T 1m2o_B           97 LVDAADPERFDEAR-VELDALFNIAELKDVPFVILGNKIDAPNA--------------VSEAELRSALGLLNTTGSQRIE  161 (190)
T ss_dssp             EEETTCGGGHHHHH-HHHHHHHTCGGGTTCCEEEEEECTTSTTC--------------CCHHHHHHHTTCSSCCC---CC
T ss_pred             EEECCChHHHHHHH-HHHHHHHcchhhcCCCEEEEEECCCCcCC--------------CCHHHHHHHhCCcccccccccc
Confidence            99999999999987 666666443  268999999999999752              333444433322          


Q ss_pred             -cCCceEEEcccCCCCCHHHHHHHHHHH
Q psy15714        169 -IKAAEYLECSAKLNEGLDQVFIAAVRS  195 (205)
Q Consensus       169 -~~~~~~~~~Sa~~~~~i~~~~~~i~~~  195 (205)
                       ....+++++||++|+|++++|+++.+.
T Consensus       162 ~~~~~~~~~~Sa~~g~gi~~l~~~l~~~  189 (190)
T 1m2o_B          162 GQRPVEVFMCSVVMRNGYLEAFQWLSQY  189 (190)
T ss_dssp             SSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred             ccceEEEEEeECCcCCCHHHHHHHHHhh
Confidence             123459999999999999999998753

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.97  E-value=1.4e-30  Score=184.11  Aligned_cols=164  Identities=19%  Similarity=0.233  Sum_probs=124.6

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEE
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLL  100 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~  100 (205)
                      .+.+||+++|++|+|||||++++.++.+.. +.+|.+.. ...+.+++  ..+.+||+||++.++..+..+++.+|++++
T Consensus         5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~   80 (171)
T 1upt_A            5 TREMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIGFN-VETVTYKN--LKFQVWDLGGLTSIRPYWRCYYSNTDAVIY   80 (171)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEE-EEEEEETT--EEEEEEEECCCGGGGGGGGGGCTTCSEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCccc-eEEEEECC--EEEEEEECCCChhhhHHHHHHhccCCEEEE
Confidence            456899999999999999999999988754 45555432 23455554  779999999999999999999999999999


Q ss_pred             EEECCCcchHHHHHHHHHHHHhhh-C-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcc
Q psy15714        101 CFSIGSTSSYENILSKWYPELKHH-C-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECS  178 (205)
Q Consensus       101 v~d~~~~~s~~~~~~~~~~~~~~~-~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  178 (205)
                      |||++++.++..+. .|+..+... . .++|+++|+||+|+.......         .+........++..+. +++++|
T Consensus        81 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~---------~~~~~~~~~~~~~~~~-~~~~~S  149 (171)
T 1upt_A           81 VVDSCDRDRIGISK-SELVAMLEEEELRKAILVVFANKQDMEQAMTSS---------EMANSLGLPALKDRKW-QIFKTS  149 (171)
T ss_dssp             EEETTCCTTHHHHH-HHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHH---------HHHHHHTGGGCTTSCE-EEEECC
T ss_pred             EEECCCHHHHHHHH-HHHHHHHhchhhCCCEEEEEEECCCCcCCCCHH---------HHHHHhCchhccCCce-EEEECc
Confidence            99999999999987 455544332 2 689999999999997643110         1111111112223344 599999


Q ss_pred             cCCCCCHHHHHHHHHHHHHhh
Q psy15714        179 AKLNEGLDQVFIAAVRSAVKK  199 (205)
Q Consensus       179 a~~~~~i~~~~~~i~~~~~~~  199 (205)
                      |++|+|++++|+++.+.+.++
T Consensus       150 a~~~~gi~~l~~~l~~~i~~~  170 (171)
T 1upt_A          150 ATKGTGLDEAMEWLVETLKSR  170 (171)
T ss_dssp             TTTCTTHHHHHHHHHHHHHTC
T ss_pred             CCCCcCHHHHHHHHHHHHhhc
Confidence            999999999999999988654

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.97  E-value=2.7e-31  Score=186.65  Aligned_cols=160  Identities=17%  Similarity=0.206  Sum_probs=119.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEEE
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFS  103 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d  103 (205)
                      +||+++|++|+|||||++++.++.+.. +.||.+.. ...+..+  .+.+.+||+||++.++..+..+++++|++++|||
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d   76 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN-VETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD   76 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSCC-EEEEECS--SCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCcee-EEEEEEC--CEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEE
Confidence            589999999999999999999888764 45565522 2334333  3789999999999999988889999999999999


Q ss_pred             CCCcchHHHHHHHHHHHHhhh--CCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCC
Q psy15714        104 IGSTSSYENILSKWYPELKHH--CPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKL  181 (205)
Q Consensus       104 ~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  181 (205)
                      ++++.++..+. .|+..+...  ..++|+++|+||+|+.......         .+........++..+ .+++++||++
T Consensus        77 ~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~---------~~~~~~~~~~~~~~~-~~~~~~Sa~~  145 (164)
T 1r8s_A           77 SNDRERVNEAR-EELMRMLAEDELRDAVLLVFANKQDLPNAMNAA---------EITDKLGLHSLRHRN-WYIQATCATS  145 (164)
T ss_dssp             TTCGGGHHHHH-HHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHH---------HHHHHTTGGGCSSCC-EEEEECBTTT
T ss_pred             CCCHHHHHHHH-HHHHHHHhchhhcCCeEEEEEECcCCcCCCCHH---------HHHHHhCcccccCcc-EEEEEcccCC
Confidence            99999999987 566655442  2689999999999997642100         011111111111122 3489999999


Q ss_pred             CCCHHHHHHHHHHHHHh
Q psy15714        182 NEGLDQVFIAAVRSAVK  198 (205)
Q Consensus       182 ~~~i~~~~~~i~~~~~~  198 (205)
                      |.|++++|+++.+.+.+
T Consensus       146 ~~gi~~l~~~l~~~i~~  162 (164)
T 1r8s_A          146 GDGLYEGLDWLSNQLRN  162 (164)
T ss_dssp             TBTHHHHHHHHHHHC--
T ss_pred             CcCHHHHHHHHHHHHhh
Confidence            99999999999988754

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=2.5e-30  Score=185.75  Aligned_cols=161  Identities=20%  Similarity=0.275  Sum_probs=123.0

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEE
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLL  100 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~  100 (205)
                      .+.+||+++|.+|+|||||++++.++.+. .+.+|.+.. ...+.+++  +.+.+||+||++.++..+..+++.+|++++
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~   89 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSN-VEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIV   89 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSS-CEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccc-eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence            56799999999999999999999998876 556666533 34556666  789999999999999999999999999999


Q ss_pred             EEECCCcchHHHHHHHHHHHHhhh--CCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHH-----HcCCce
Q psy15714        101 CFSIGSTSSYENILSKWYPELKHH--CPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRR-----KIKAAE  173 (205)
Q Consensus       101 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~  173 (205)
                      |||++++.++..+. .|+..+...  ..+.|+++|+||+|+...              ...++......     ..+. +
T Consensus        90 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~NK~Dl~~~--------------~~~~~i~~~~~~~~~~~~~~-~  153 (187)
T 1zj6_A           90 VVDSTDRERISVTR-EELYKMLAHEDLRKAGLLIFANKQDVKEC--------------MTVAEISQFLKLTSIKDHQW-H  153 (187)
T ss_dssp             EEETTCTTTHHHHH-HHHHHHHTSGGGTTCEEEEEEECTTSTTC--------------CCHHHHHHHHTGGGCCSSCE-E
T ss_pred             EEeCCCHHHHHHHH-HHHHHHHhchhhCCCeEEEEEECCCCcCC--------------CCHHHHHHHhChhhhcCCCc-E
Confidence            99999999999987 676666554  268999999999999753              22233322221     2233 5


Q ss_pred             EEEcccCCCCCHHHHHHHHHHHHHhhcc
Q psy15714        174 YLECSAKLNEGLDQVFIAAVRSAVKKQD  201 (205)
Q Consensus       174 ~~~~Sa~~~~~i~~~~~~i~~~~~~~~~  201 (205)
                      ++++||++|+|++++|++|.+.+.....
T Consensus       154 ~~~~Sa~~g~gi~~l~~~l~~~~~~~~~  181 (187)
T 1zj6_A          154 IQACCALTGEGLCQGLEWMMSRLKIRLE  181 (187)
T ss_dssp             EEECBTTTTBTHHHHHHHHHHHHCC---
T ss_pred             EEEccCCCCcCHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999998765443

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.97  E-value=5.3e-30  Score=183.80  Aligned_cols=159  Identities=16%  Similarity=0.210  Sum_probs=124.8

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEE
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLL  100 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~  100 (205)
                      .+.+||+++|++|+|||||++++.++. ...+.+|.+.. ...+.+++  ..+.+||+||++.++..+..+++.+|++++
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFN-IKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLIW   91 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEE-EEEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEEE
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccc-eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence            567999999999999999999999988 56667776633 33455555  779999999999999999999999999999


Q ss_pred             EEECCCcchHHHHHHHHHHHHhhh--CCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHH-----HHcCCce
Q psy15714        101 CFSIGSTSSYENILSKWYPELKHH--CPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMR-----RKIKAAE  173 (205)
Q Consensus       101 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~  173 (205)
                      |||++++.++..+. .|+..+...  ..++|+++|+||+|+.....              .++..+..     +..+ .+
T Consensus        92 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--------------~~~~~~~~~~~~~~~~~-~~  155 (186)
T 1ksh_A           92 VVDSADRQRMQDCQ-RELQSLLVEERLAGATLLIFANKQDLPGALS--------------CNAIQEALELDSIRSHH-WR  155 (186)
T ss_dssp             EEETTCGGGHHHHH-HHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--------------HHHHHHHTTGGGCCSSC-EE
T ss_pred             EEECcCHHHHHHHH-HHHHHHHhChhcCCCcEEEEEeCccCCCCCC--------------HHHHHHHhChhhccCCc-eE
Confidence            99999999999987 565555443  26899999999999976421              12221111     1223 35


Q ss_pred             EEEcccCCCCCHHHHHHHHHHHHHhh
Q psy15714        174 YLECSAKLNEGLDQVFIAAVRSAVKK  199 (205)
Q Consensus       174 ~~~~Sa~~~~~i~~~~~~i~~~~~~~  199 (205)
                      ++++||++|+|++++|+++.+.+.++
T Consensus       156 ~~~~Sa~~~~gi~~l~~~l~~~i~~~  181 (186)
T 1ksh_A          156 IQGCSAVTGEDLLPGIDWLLDDISSR  181 (186)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred             EEEeeCCCCCCHHHHHHHHHHHHHhc
Confidence            99999999999999999999987643

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.97  E-value=2.8e-30  Score=184.62  Aligned_cols=161  Identities=18%  Similarity=0.221  Sum_probs=122.7

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEE
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLL  100 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~  100 (205)
                      .+.+||+++|++|+|||||++++.++.+ ..+.+|.+.. ...+.+++  ..+.+||+||++.++..+..+++.+|++++
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFN-VETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVIF   91 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCC-EEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccc-eEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence            5679999999999999999999998887 4455665533 34555665  789999999999999999999999999999


Q ss_pred             EEECCCcchHHHHHHHHHHHHhhh--CCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHc----CCceE
Q psy15714        101 CFSIGSTSSYENILSKWYPELKHH--CPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKI----KAAEY  174 (205)
Q Consensus       101 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~  174 (205)
                      |||++++.++..+. .|+..+...  ..++|+++|+||+|+....              ..++........    ...++
T Consensus        92 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--------------~~~~i~~~~~~~~~~~~~~~~  156 (183)
T 1moz_A           92 VVDSTDKDRMSTAS-KELHLMLQEEELQDAALLVFANKQDQPGAL--------------SASEVSKELNLVELKDRSWSI  156 (183)
T ss_dssp             EEETTCTTTHHHHH-HHHHHHTTSSTTSSCEEEEEEECTTSTTCC--------------CHHHHHHHTTTTTCCSSCEEE
T ss_pred             EEECCCHHHHHHHH-HHHHHHHcChhhCCCeEEEEEECCCCCCCC--------------CHHHHHHHhCcccccCCceEE
Confidence            99999999999987 666666554  3689999999999997632              122222221111    12259


Q ss_pred             EEcccCCCCCHHHHHHHHHHHHHhhc
Q psy15714        175 LECSAKLNEGLDQVFIAAVRSAVKKQ  200 (205)
Q Consensus       175 ~~~Sa~~~~~i~~~~~~i~~~~~~~~  200 (205)
                      +++||++|+|++++|+++.+.+.+++
T Consensus       157 ~~~Sa~~~~gi~~l~~~l~~~~~~~q  182 (183)
T 1moz_A          157 VASSAIKGEGITEGLDWLIDVIKEEQ  182 (183)
T ss_dssp             EEEBGGGTBTHHHHHHHHHHHHHHHH
T ss_pred             EEccCCCCcCHHHHHHHHHHHHHhcc
Confidence            99999999999999999999987654

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.97  E-value=2.1e-29  Score=182.75  Aligned_cols=165  Identities=32%  Similarity=0.529  Sum_probs=140.9

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEE
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFL   99 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   99 (205)
                      ...+||+++|++|+|||||++++.+..+...+.++.+..+ ...+.+++..+.+.+||++|++.++..+..+++.+++++
T Consensus         3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i   82 (199)
T 2f9l_A            3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL   82 (199)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence            4578999999999999999999999998777777776554 457788999999999999999999988888889999999


Q ss_pred             EEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcc
Q psy15714        100 LCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECS  178 (205)
Q Consensus       100 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  178 (205)
                      +|||+++..++.++. .|+..+.... .+.|+++++||+|+...+            .+..++++.++...++. ++++|
T Consensus        83 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~------------~~~~~~a~~l~~~~~~~-~~d~S  148 (199)
T 2f9l_A           83 LVYDIAKHLTYENVE-RWLKELRDHADSNIVIMLVGNKSDLRHLR------------AVPTDEARAFAEKNNLS-FIETS  148 (199)
T ss_dssp             EEEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECTTCGGGC------------CSCHHHHHHHHHHTTCE-EEECC
T ss_pred             EEEECcCHHHHHHHH-HHHHHHHHhcCCCCeEEEEEECccccccc------------CcCHHHHHHHHHHcCCe-EEEEe
Confidence            999999999998876 7887776654 579999999999997643            56667888999888876 99999


Q ss_pred             cCCCCCHHHHHHHHHHHHHhh
Q psy15714        179 AKLNEGLDQVFIAAVRSAVKK  199 (205)
Q Consensus       179 a~~~~~i~~~~~~i~~~~~~~  199 (205)
                      |+++.|++++|+++.+.+...
T Consensus       149 al~~~~i~~l~~~l~~~~~~~  169 (199)
T 2f9l_A          149 ALDSTNVEEAFKNILTEIYRI  169 (199)
T ss_dssp             TTTCTTHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHH
Confidence            999999999999999988764

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.97  E-value=1.5e-30  Score=187.19  Aligned_cols=165  Identities=19%  Similarity=0.197  Sum_probs=124.9

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEE
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLL  100 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~  100 (205)
                      .+.+||+++|++|+|||||++++..+.+.. +.+|.+.. ...+..++  +.+.+||+||++.++..+..+++.+|++++
T Consensus        20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~   95 (189)
T 2x77_A           20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGVN-LETLQYKN--ISFEVWDLGGQTGVRPYWRCYFSDTDAVIY   95 (189)
T ss_dssp             TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTCC-EEEEEETT--EEEEEEEECCSSSSCCCCSSSSTTCCEEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCceE-EEEEEECC--EEEEEEECCCCHhHHHHHHHHhhcCCEEEE
Confidence            467999999999999999999999888754 45555422 33455554  789999999999999999999999999999


Q ss_pred             EEECCCcchHHHHHHHHHHHHhhhC--CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcc
Q psy15714        101 CFSIGSTSSYENILSKWYPELKHHC--PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECS  178 (205)
Q Consensus       101 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  178 (205)
                      |||+++++++..+. .|+..+....  .+.|+++|+||+|+.......         .+........++..+. +++++|
T Consensus        96 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~---------~~~~~~~~~~~~~~~~-~~~~~S  164 (189)
T 2x77_A           96 VVDSTDRDRMGVAK-HELYALLDEDELRKSLLLIFANKQDLPDAASEA---------EIAEQLGVSSIMNRTW-TIVKSS  164 (189)
T ss_dssp             EEETTCCTTHHHHH-HHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHH---------HHHHHTTGGGCCSSCE-EEEECC
T ss_pred             EEeCCCHHHHHHHH-HHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHH---------HHHHHhChhhccCCce-EEEEcc
Confidence            99999999999987 5555554332  689999999999997642110         1111111111122233 599999


Q ss_pred             cCCCCCHHHHHHHHHHHHHhhc
Q psy15714        179 AKLNEGLDQVFIAAVRSAVKKQ  200 (205)
Q Consensus       179 a~~~~~i~~~~~~i~~~~~~~~  200 (205)
                      |++++|++++|+++.+.+.+.+
T Consensus       165 a~~~~gi~~l~~~l~~~i~~~~  186 (189)
T 2x77_A          165 SKTGDGLVEGMDWLVERLREQG  186 (189)
T ss_dssp             TTTCTTHHHHHHHHHHHHHHTC
T ss_pred             CCCccCHHHHHHHHHHHHHhcc
Confidence            9999999999999999987654

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.97  E-value=2e-30  Score=185.52  Aligned_cols=159  Identities=20%  Similarity=0.286  Sum_probs=121.0

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEE
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLL  100 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~  100 (205)
                      ...+||+++|++|+|||||++++.++.+. .+.+|.+.. ...+.+++  +.+.+||+||++.++..+..+++.+|++++
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~-~~~~t~g~~-~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~   89 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQGFN-IKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTDILIY   89 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCSCCE-EEEEETTEE-EEEEEETT--EEEEEEECSSCGGGHHHHHHHHTTCSEEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcCCCC-cccCcCCeE-EEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence            56799999999999999999999988653 345555532 33455665  779999999999999988889999999999


Q ss_pred             EEECCCcchHHHHHHHHHHHHhhh--CCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHH-----HHHcCCce
Q psy15714        101 CFSIGSTSSYENILSKWYPELKHH--CPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKM-----RRKIKAAE  173 (205)
Q Consensus       101 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~  173 (205)
                      |||++++.++..+. .|+..+...  ..++|+++|+||+|+.....              .++....     +...+ .+
T Consensus        90 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~--------------~~~~~~~~~~~~~~~~~-~~  153 (181)
T 1fzq_A           90 VIDSADRKRFEETG-QELTELLEEEKLSCVPVLIFANKQDLLTAAP--------------ASEIAEGLNLHTIRDRV-WQ  153 (181)
T ss_dssp             EEETTCGGGHHHHH-HHHHHHTTCGGGTTCCEEEEEECTTSTTCCC--------------HHHHHHHTTGGGCCSSC-EE
T ss_pred             EEECcCHHHHHHHH-HHHHHHHhChhhcCCCEEEEEECcCcccCCC--------------HHHHHHHhCchhccCCc-eE
Confidence            99999999999987 566555332  26899999999999976431              1111111     11122 35


Q ss_pred             EEEcccCCCCCHHHHHHHHHHHHHhh
Q psy15714        174 YLECSAKLNEGLDQVFIAAVRSAVKK  199 (205)
Q Consensus       174 ~~~~Sa~~~~~i~~~~~~i~~~~~~~  199 (205)
                      ++++||++|+|++++|+++.+.+.++
T Consensus       154 ~~~~Sa~~g~gi~~l~~~l~~~~~~~  179 (181)
T 1fzq_A          154 IQSCSALTGEGVQDGMNWVCKNVNAK  179 (181)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHTC---
T ss_pred             EEEccCCCCCCHHHHHHHHHHHHHhc
Confidence            99999999999999999999887654

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.97  E-value=5.9e-31  Score=189.98  Aligned_cols=164  Identities=17%  Similarity=0.184  Sum_probs=118.0

Q ss_pred             ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEE
Q psy15714         19 SVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCF   98 (205)
Q Consensus        19 ~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   98 (205)
                      ...+.+||+++|++|+|||||++++..+.+.. +.+|.+.. ...+..++  +.+.+||+||++.++..+..+++.+|++
T Consensus        25 ~~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~i  100 (192)
T 2b6h_A           25 FGKKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN-VETVEYKN--ICFTVWDVGGQDKIRPLWRHYFQNTQGL  100 (192)
T ss_dssp             TTTSCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEEETTEE-EEEEEETT--EEEEEEECC-----CTTHHHHHHTCCEE
T ss_pred             ccCCccEEEEECCCCCCHHHHHHHHHhCCccc-cCCcCcee-EEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEE
Confidence            45678999999999999999999999888753 34554422 23444444  7899999999999999888899999999


Q ss_pred             EEEEECCCcchHHHHHHHHHHHHhhhC--CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEE
Q psy15714         99 LLCFSIGSTSSYENILSKWYPELKHHC--PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLE  176 (205)
Q Consensus        99 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (205)
                      ++|||++++.++..+. .|+..+....  .++|+++|+||+|+.......         .+........++..+ .++++
T Consensus       101 ilv~D~~~~~s~~~~~-~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~---------~i~~~~~~~~~~~~~-~~~~~  169 (192)
T 2b6h_A          101 IFVVDSNDRERVQESA-DELQKMLQEDELRDAVLLVFANKQDMPNAMPVS---------ELTDKLGLQHLRSRT-WYVQA  169 (192)
T ss_dssp             EEEEETTCGGGHHHHH-HHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHH---------HHHHHTTGGGCSSCC-EEEEE
T ss_pred             EEEEECCCHHHHHHHH-HHHHHHhcccccCCCeEEEEEECCCCCCCCCHH---------HHHHHhCcccccCCc-eEEEE
Confidence            9999999999999987 6666554422  689999999999997642100         111111111111222 34899


Q ss_pred             cccCCCCCHHHHHHHHHHHHH
Q psy15714        177 CSAKLNEGLDQVFIAAVRSAV  197 (205)
Q Consensus       177 ~Sa~~~~~i~~~~~~i~~~~~  197 (205)
                      +||++|.|++++|+++.+.+.
T Consensus       170 ~SA~~g~gi~~l~~~l~~~i~  190 (192)
T 2b6h_A          170 TCATQGTGLYDGLDWLSHELS  190 (192)
T ss_dssp             CBTTTTBTHHHHHHHHHHHTT
T ss_pred             CcCCCcCCHHHHHHHHHHHHh
Confidence            999999999999999998764

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.97  E-value=5e-31  Score=189.09  Aligned_cols=170  Identities=19%  Similarity=0.287  Sum_probs=122.2

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcC--CCCCCCcCccccccc-eeEEE---CCEEEEEEEEEcCCCcccccccccCcCCCc
Q psy15714         23 ALKVTTVGDGMVGKTCLLITHTEN--KFPTDYVPTVFDNYP-DTITV---DNKTYDVTLWDTAGQEDYERLRPMSYPNTD   96 (205)
Q Consensus        23 ~~ki~v~G~~~~GKstli~~~~~~--~~~~~~~~t~~~~~~-~~~~~---~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   96 (205)
                      .+||+++|++|+|||||++++.+.  .+...+.+|.+..+. ..+.+   ++..+.+.+||++|++.|+.+++.++++++
T Consensus         2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   81 (184)
T 2zej_A            2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA   81 (184)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence            479999999999999999999985  455556666655442 22222   345678999999999999998888899999


Q ss_pred             EEEEEEECCCc-chHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCc---
Q psy15714         97 CFLLCFSIGST-SSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAA---  172 (205)
Q Consensus        97 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  172 (205)
                      ++++|||++++ .++..+. .|+..+....++.|+++|+||+|+...+...         ....+.+..+++..+..   
T Consensus        82 ~~i~v~d~~~~~~s~~~~~-~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~---------~~~~~~~~~~~~~~~~~~~~  151 (184)
T 2zej_A           82 LYLAVYDLSKGQAEVDAMK-PWLFNIKARASSSPVILVGTHLDVSDEKQRK---------ACMSKITKELLNKRGFPAIR  151 (184)
T ss_dssp             EEEEEEEGGGCHHHHHTHH-HHHHHHHHHCTTCEEEEEEECGGGCCHHHHH---------HHHHHHHHHTTTCTTSCEEE
T ss_pred             EEEEEEeCCcchhHHHHHH-HHHHHHHhhCCCCcEEEEEECCCcccchhhH---------HHHHHHHHHHHHhcCCcchh
Confidence            99999999997 5788876 8998887776789999999999997643110         01134456666666664   


Q ss_pred             eEEEcccCCCC-CHHHHHHHHHHHHHhhccc
Q psy15714        173 EYLECSAKLNE-GLDQVFIAAVRSAVKKQDK  202 (205)
Q Consensus       173 ~~~~~Sa~~~~-~i~~~~~~i~~~~~~~~~~  202 (205)
                      +++++||+++. +++++++.+.+.+.+.+..
T Consensus       152 ~~~~~Sa~~~~~~~~~l~~~i~~~~~~~~~~  182 (184)
T 2zej_A          152 DYHFVNATEESDALAKLRKTIINESLNFKIR  182 (184)
T ss_dssp             EEEECCTTSCCHHHHHHHHHHHHHHHCC---
T ss_pred             heEEEecccCchhHHHHHHHHHHHHhccccC
Confidence            38999999996 9999999999888765443

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.97  E-value=8e-29  Score=178.66  Aligned_cols=164  Identities=31%  Similarity=0.507  Sum_probs=142.2

Q ss_pred             ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcE
Q psy15714         19 SVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDC   97 (205)
Q Consensus        19 ~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   97 (205)
                      .....++|+++|++|+|||||++++.+..+...+.++.+..+ ...+.+++..+.+.+||++|.+++...+..+++.+++
T Consensus        25 ~~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~  104 (191)
T 1oix_A           25 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVG  104 (191)
T ss_dssp             CCSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCE
T ss_pred             ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCE
Confidence            345679999999999999999999999998877788877665 5678889999999999999999998888888899999


Q ss_pred             EEEEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEE
Q psy15714         98 FLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLE  176 (205)
Q Consensus        98 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (205)
                      +++|||+++..+++++. .|+..+.... .+.|+++++||+|+....            ....++++.++...++. +++
T Consensus       105 ~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~------------~~~~~~a~~l~~~~~~~-~ld  170 (191)
T 1oix_A          105 ALLVYDIAKHLTYENVE-RWLKELRDHADSNIVIMLVGNKSDLRHLR------------AVPTDEARAFAEKNGLS-FIE  170 (191)
T ss_dssp             EEEEEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECGGGGGGC------------CSCHHHHHHHHHHTTCE-EEE
T ss_pred             EEEEEECcCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECccccccc------------ccCHHHHHHHHHHcCCE-EEE
Confidence            99999999999988876 6887776544 578999999999997643            55677889999988876 999


Q ss_pred             cccCCCCCHHHHHHHHHHHH
Q psy15714        177 CSAKLNEGLDQVFIAAVRSA  196 (205)
Q Consensus       177 ~Sa~~~~~i~~~~~~i~~~~  196 (205)
                      +||+++.|++++|+++.+.+
T Consensus       171 ~Sald~~~v~~l~~~l~~~i  190 (191)
T 1oix_A          171 TSALDSTNVEAAFQTILTEI  190 (191)
T ss_dssp             CCTTTCTTHHHHHHHHHHHH
T ss_pred             EeCCCCCCHHHHHHHHHHHh
Confidence            99999999999999998765

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.96  E-value=1.5e-29  Score=190.26  Aligned_cols=163  Identities=20%  Similarity=0.306  Sum_probs=124.1

Q ss_pred             ccceeeEEEEECCC---------CCCHHHHHHHHhc---CCCCCCCcCcc-cccc-ceeE--------------EECCEE
Q psy15714         19 SVHKALKVTTVGDG---------MVGKTCLLITHTE---NKFPTDYVPTV-FDNY-PDTI--------------TVDNKT   70 (205)
Q Consensus        19 ~~~~~~ki~v~G~~---------~~GKstli~~~~~---~~~~~~~~~t~-~~~~-~~~~--------------~~~~~~   70 (205)
                      .....+||+++|.+         |+|||||+++|.+   +.+...+.+++ +..+ ...+              .+++..
T Consensus        15 ~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~   94 (255)
T 3c5h_A           15 YFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVE   94 (255)
T ss_dssp             SCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC--------
T ss_pred             CCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcE
Confidence            35677999999999         9999999999999   56666666665 2222 1211              256778


Q ss_pred             EEEEEEE-----------------------cCCCcccccccccCcC---------------------CCcEEEEEEECCC
Q psy15714         71 YDVTLWD-----------------------TAGQEDYERLRPMSYP---------------------NTDCFLLCFSIGS  106 (205)
Q Consensus        71 ~~~~i~D-----------------------~~g~~~~~~~~~~~~~---------------------~~~~~i~v~d~~~  106 (205)
                      +.+.|||                       ++|+++|+.++..++.                     ++|++|+|||+++
T Consensus        95 ~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~  174 (255)
T 3c5h_A           95 CKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSR  174 (255)
T ss_dssp             -CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC
T ss_pred             EEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCC
Confidence            9999999                       7788888888888887                     7999999999999


Q ss_pred             c--chHHHHHHHHHHHHhhh--CCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHc-CCceEEEcccCC
Q psy15714        107 T--SSYENILSKWYPELKHH--CPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKI-KAAEYLECSAKL  181 (205)
Q Consensus       107 ~--~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~  181 (205)
                      +  .+++.+. .|+..+...  ..++|+++|+||+|+...+            .+  ++++.+++.. +. +++++||++
T Consensus       175 ~~~~s~~~~~-~~l~~i~~~~~~~~~piilV~NK~Dl~~~~------------~v--~~~~~~~~~~~~~-~~~e~SAk~  238 (255)
T 3c5h_A          175 GMNRNFDDQL-KFVSNLYNQLAKTKKPIVVVLTKCDEGVER------------YI--RDAHTFALSKKNL-QVVETSARS  238 (255)
T ss_dssp             ----CHHHHH-HHHHHHHHHHHHTTCCEEEEEECGGGBCHH------------HH--HHHHHHHHTSSSC-CEEECBTTT
T ss_pred             CchhhHHHHH-HHHHHHHHHhccCCCCEEEEEEcccccccH------------HH--HHHHHHHHhcCCC-eEEEEECCC
Confidence            8  9999987 788887665  2689999999999996543            22  5677777764 55 499999999


Q ss_pred             CCCHHHHHHHHHHHHH
Q psy15714        182 NEGLDQVFIAAVRSAV  197 (205)
Q Consensus       182 ~~~i~~~~~~i~~~~~  197 (205)
                      |.|++++|++|.+.+.
T Consensus       239 g~gv~elf~~l~~~l~  254 (255)
T 3c5h_A          239 NVNVDLAFSTLVQLID  254 (255)
T ss_dssp             TBSHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHhc
Confidence            9999999999988763

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.96  E-value=4.7e-28  Score=172.22  Aligned_cols=161  Identities=23%  Similarity=0.255  Sum_probs=121.0

Q ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEE
Q psy15714         20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCF   98 (205)
Q Consensus        20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   98 (205)
                      ..+.++|+++|++|+|||||++++.++.+...+.++..... ...+.+++.  .+.+||+||++.+...+..++..+|++
T Consensus         5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~d~~   82 (178)
T 2lkc_A            5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDK--KITFLDTPGHEAFTTMRARGAQVTDIV   82 (178)
T ss_dssp             CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTE--EEEESCCCSSSSSSCSCCSSCCCCCEE
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCc--eEEEEECCCCHHHHHHHHHHHhhCCEE
Confidence            35678999999999999999999999988776666554444 456677774  578999999999999999999999999


Q ss_pred             EEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHH-------HcC-
Q psy15714         99 LLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRR-------KIK-  170 (205)
Q Consensus        99 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~-  170 (205)
                      ++|||+++.......  .++..+..  .++|+++|+||+|+.....               ++......       .++ 
T Consensus        83 i~v~d~~~~~~~~~~--~~l~~~~~--~~~p~ilv~nK~Dl~~~~~---------------~~~~~~~~~~~~~~~~~~~  143 (178)
T 2lkc_A           83 ILVVAADDGVMPQTV--EAINHAKA--ANVPIIVAINKMDKPEANP---------------DRVMQELMEYNLVPEEWGG  143 (178)
T ss_dssp             EEEEETTCCCCHHHH--HHHHHHGG--GSCCEEEEEETTTSSCSCH---------------HHHHHHHTTTTCCBTTTTS
T ss_pred             EEEEECCCCCcHHHH--HHHHHHHh--CCCCEEEEEECccCCcCCH---------------HHHHHHHHhcCcChhHcCC
Confidence            999999885433332  23333333  3899999999999976421               11111111       111 


Q ss_pred             CceEEEcccCCCCCHHHHHHHHHHHHHhhcc
Q psy15714        171 AAEYLECSAKLNEGLDQVFIAAVRSAVKKQD  201 (205)
Q Consensus       171 ~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~  201 (205)
                      ..+++++||++|+|++++|++|.+.+...+.
T Consensus       144 ~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~~  174 (178)
T 2lkc_A          144 DTIFCKLSAKTKEGLDHLLEMILLVSEMEEL  174 (178)
T ss_dssp             SEEEEECCSSSSHHHHHHHHHHHHHHHHTTT
T ss_pred             cccEEEEecCCCCCHHHHHHHHHHhhhhhcc
Confidence            1359999999999999999999998776544

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.96  E-value=2.8e-29  Score=183.91  Aligned_cols=173  Identities=16%  Similarity=0.156  Sum_probs=118.5

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCE-EEEEEEEEcCCCccccc-ccccCcCCCcEE
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNK-TYDVTLWDTAGQEDYER-LRPMSYPNTDCF   98 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~i~D~~g~~~~~~-~~~~~~~~~~~~   98 (205)
                      .+.+||+++|++|+|||||+++|.++.+...+.++.....  .+.+++. .+.+.+||+||++.++. ++..+++.+|++
T Consensus         5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~   82 (214)
T 2fh5_B            5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSA--IYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAV   82 (214)
T ss_dssp             ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEE--EEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeE--EEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEE
Confidence            4678999999999999999999999998777665443222  2555543 57899999999999988 778889999999


Q ss_pred             EEEEECCCcc-hHHHHHHHHHHHHhhh---CCCCCEEEEeeCcccccCchhhhhhhhh----------cccc--------
Q psy15714         99 LLCFSIGSTS-SYENILSKWYPELKHH---CPKVPIILVGTKADLRSENKTIDKKKAA----------EVDL--------  156 (205)
Q Consensus        99 i~v~d~~~~~-s~~~~~~~~~~~~~~~---~~~~p~ivv~nK~Dl~~~~~~~~~~~~~----------~~~~--------  156 (205)
                      ++|||+++.. ++......|...+...   ..++|+++|+||+|+.............          ....        
T Consensus        83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~  162 (214)
T 2fh5_B           83 VFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSS  162 (214)
T ss_dssp             EEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC----------
T ss_pred             EEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCCc
Confidence            9999999854 4666665666666542   2579999999999998654321111000          0001        


Q ss_pred             ----ccHHHHHHHHHHcC--CceEEEcccCCC------CCHHHHHHHHHHH
Q psy15714        157 ----VSTSQGKKMRRKIK--AAEYLECSAKLN------EGLDQVFIAAVRS  195 (205)
Q Consensus       157 ----~~~~~~~~~~~~~~--~~~~~~~Sa~~~------~~i~~~~~~i~~~  195 (205)
                          +..++++.++....  ..++++|||++|      +|++++|++|.+.
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~  213 (214)
T 2fh5_B          163 TAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI  213 (214)
T ss_dssp             --CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred             cccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence                11111112221111  445999999999      9999999999875

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.96  E-value=1.1e-28  Score=191.84  Aligned_cols=166  Identities=18%  Similarity=0.228  Sum_probs=117.9

Q ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEE
Q psy15714         20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFL   99 (205)
Q Consensus        20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   99 (205)
                      ..+.+||+|+|.+|+|||||+++|.++.+...+ +|.+..+ ..+...+  +.+.|||+||++.+..++..+++.+|++|
T Consensus       162 ~~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~-pT~~~~~-~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~ad~vi  237 (329)
T 3o47_A          162 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNV-ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI  237 (329)
T ss_dssp             -CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEE-EETTEEE-EEEEETT--EEEEEEECC-----CCSHHHHHTTEEEEE
T ss_pred             ccCcceEEEECCCCccHHHHHHHHhCCCCCCcc-cccceEE-EEEecCc--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            456789999999999999999999998875432 4443332 2333444  78999999999999999999999999999


Q ss_pred             EEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcc
Q psy15714        100 LCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECS  178 (205)
Q Consensus       100 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  178 (205)
                      +|||++++.++..+...|...+.... .++|++||+||+|+........         +..+.....++..+ .+++++|
T Consensus       238 lV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~---------i~~~~~~~~~~~~~-~~~~~vS  307 (329)
T 3o47_A          238 FVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAE---------ITDKLGLHSLRHRN-WYIQATC  307 (329)
T ss_dssp             EEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHH---------HHHHHTCTTCCSSC-EEEEECB
T ss_pred             EEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHH---------HHHHhchhhhhcCC-CEEEEEE
Confidence            99999999999998855555555443 6899999999999976431110         00111111111122 3499999


Q ss_pred             cCCCCCHHHHHHHHHHHHHhh
Q psy15714        179 AKLNEGLDQVFIAAVRSAVKK  199 (205)
Q Consensus       179 a~~~~~i~~~~~~i~~~~~~~  199 (205)
                      |++|.|++++|++|.+.+.++
T Consensus       308 Ak~g~gi~el~~~l~~~l~~~  328 (329)
T 3o47_A          308 ATSGDGLYEGLDWLSNQLRNQ  328 (329)
T ss_dssp             TTTTBTHHHHHHHHHHHHTC-
T ss_pred             CCCCcCHHHHHHHHHHHHHhc
Confidence            999999999999999987654

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.96  E-value=3.5e-28  Score=171.28  Aligned_cols=153  Identities=14%  Similarity=0.128  Sum_probs=112.4

Q ss_pred             eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccc-cccceeEEECCEEEEEEEEEcCCCccccc------ccccCcC-
Q psy15714         22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVF-DNYPDTITVDNKTYDVTLWDTAGQEDYER------LRPMSYP-   93 (205)
Q Consensus        22 ~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~~-   93 (205)
                      +.++|+++|++|+|||||++++.+..+.....++.. ......+.+++  ..+.+||+||+..+..      +...++. 
T Consensus         2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~   79 (165)
T 2wji_A            2 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIIN   79 (165)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhc
Confidence            458999999999999999999998776443334332 22234455666  5799999999987752      2244443 


Q ss_pred             -CCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCc
Q psy15714         94 -NTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAA  172 (205)
Q Consensus        94 -~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (205)
                       +++++++|+|+++.++   .. .|+..+...  ++|+++|+||+|+...+            .+.. ++..+++.++..
T Consensus        80 ~~~~~~i~v~D~~~~~~---~~-~~~~~~~~~--~~p~ilv~nK~Dl~~~~------------~~~~-~~~~~~~~~~~~  140 (165)
T 2wji_A           80 EKPDLVVNIVDATALER---NL-YLTLQLMEM--GANLLLALNKMDLAKSL------------GIEI-DVDKLEKILGVK  140 (165)
T ss_dssp             HCCSEEEEEEETTCHHH---HH-HHHHHHHHT--TCCEEEEEECHHHHHHT------------TCCC-CHHHHHHHHTSC
T ss_pred             CCCCEEEEEecCCchhH---hH-HHHHHHHhc--CCCEEEEEEchHhcccc------------Chhh-HHHHHHHHhCCC
Confidence             7999999999987543   33 576666654  89999999999986532            2322 356777777766


Q ss_pred             eEEEcccCCCCCHHHHHHHHHHHH
Q psy15714        173 EYLECSAKLNEGLDQVFIAAVRSA  196 (205)
Q Consensus       173 ~~~~~Sa~~~~~i~~~~~~i~~~~  196 (205)
                       ++++||++|+|++++|+++.+.+
T Consensus       141 -~~~~SA~~~~~v~~l~~~l~~~~  163 (165)
T 2wji_A          141 -VVPLSAAKKMGIEELKKAISIAV  163 (165)
T ss_dssp             -EEECBGGGTBSHHHHHHHHHHHT
T ss_pred             -EEEEEcCCCCCHHHHHHHHHHHh
Confidence             99999999999999999998765

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.96  E-value=2.4e-28  Score=188.20  Aligned_cols=167  Identities=16%  Similarity=0.163  Sum_probs=127.6

Q ss_pred             eeeEEEEECCCCCCHHHHHHHHhcCCCC---CCCcCccccccceeEEECCEEEEEEEEEcCCCccc-----ccccccCcC
Q psy15714         22 KALKVTTVGDGMVGKTCLLITHTENKFP---TDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY-----ERLRPMSYP   93 (205)
Q Consensus        22 ~~~ki~v~G~~~~GKstli~~~~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-----~~~~~~~~~   93 (205)
                      ..+||+++|.+|+|||||++++.++...   ..+.+|.+..+. .+.+++ .+.+.+||+||++.+     +..+..+++
T Consensus         2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~-~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~   79 (307)
T 3r7w_A            2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHS-HLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIFQ   79 (307)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEE-EEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEE-EEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHhc
Confidence            3589999999999999999999987332   123344443332 334434 578999999999988     677788889


Q ss_pred             CCcEEEEEEECCCcchHHHHHHHHH---HHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcC
Q psy15714         94 NTDCFLLCFSIGSTSSYENILSKWY---PELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIK  170 (205)
Q Consensus        94 ~~~~~i~v~d~~~~~s~~~~~~~~~---~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (205)
                      ++|++|+|||++++.+++++. .|.   ..+....+++|+++|+||+|+.........      ..+..++++.+++.++
T Consensus        80 ~ad~vi~V~D~t~~~s~~~l~-~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~------~~v~~~~~~~~~~~~g  152 (307)
T 3r7w_A           80 MVQVLIHVFDVESTEVLKDIE-IFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREEL------FQIMMKNLSETSSEFG  152 (307)
T ss_dssp             TCSEEEEEEETTCSCHHHHHH-HHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHH------HHHHHHHHHHHHHTTT
T ss_pred             cCCEEEEEEECCChhhHHHHH-HHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHH------HHHHHHHHHHHHHHcC
Confidence            999999999999999999886 554   444445578999999999999863211000      0266788899999998


Q ss_pred             C--ceEEEcccCCCCCHHHHHHHHHHHHHh
Q psy15714        171 A--AEYLECSAKLNEGLDQVFIAAVRSAVK  198 (205)
Q Consensus       171 ~--~~~~~~Sa~~~~~i~~~~~~i~~~~~~  198 (205)
                      .  .+++++||++ .++.++|..+++.++.
T Consensus       153 ~~~~~~~~tSa~~-~~i~e~~~~iv~~li~  181 (307)
T 3r7w_A          153 FPNLIGFPTSIWD-ESLYKAWSQIVCSLIP  181 (307)
T ss_dssp             CCSCEEEECCTTS-SHHHHHHHHHHHTTCS
T ss_pred             CCCeEEEEeeecC-ChHHHHHHHHHHHHcC
Confidence            4  5699999999 8999999998876543

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.95  E-value=2.6e-29  Score=192.53  Aligned_cols=163  Identities=14%  Similarity=0.138  Sum_probs=120.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCC---CCcCccccccceeEEECCEEEEEEEEEcCCCccccc---ccccCcCCCcEE
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENKFPT---DYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYER---LRPMSYPNTDCF   98 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---~~~~~~~~~~~~   98 (205)
                      ||+++|+.|+|||||++++.++.+..   .+.+|++..+..   ++ ..++++||||+|+++|+.   .+..++++++++
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~---v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~   76 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH---FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGAL   76 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE---EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEE
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE---Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCEE
Confidence            68999999999999999887664432   245565555432   22 347899999999999974   357889999999


Q ss_pred             EEEEECCCc--chHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHH----cCCc
Q psy15714         99 LLCFSIGST--SSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRK----IKAA  172 (205)
Q Consensus        99 i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~  172 (205)
                      |+|||++++  +++..+. .|+..+....+++|+++++||+|+.........     .+.+..++++++++.    .++.
T Consensus        77 IlV~Ditd~~~~~~~~l~-~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~-----~R~V~~~~~~~la~~~~~~~~i~  150 (331)
T 3r7w_B           77 VYVIDSQDEYINAITNLA-MIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDA-----QRDIMQRTGEELLELGLDGVQVS  150 (331)
T ss_dssp             EEECCCSSCTTHHHHHHH-HHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHH-----HHHHHHHHHHTTSSSSCSCCCEE
T ss_pred             EEEEECCchHHHHHHHHH-HHHHHHhhcCCCCcEEEEEECcccCchhhhhhH-----HHHhhHHHHHHHHhhcccccCce
Confidence            999999998  2233332 345555555689999999999999765321110     125777788888876    4555


Q ss_pred             eEEEcccCCCCCHHHHHHHHHHHHHhh
Q psy15714        173 EYLECSAKLNEGLDQVFIAAVRSAVKK  199 (205)
Q Consensus       173 ~~~~~Sa~~~~~i~~~~~~i~~~~~~~  199 (205)
                       |++|||++ .++.++|..+++.++..
T Consensus       151 -f~eTSAkd-~nV~eAFs~iv~~li~~  175 (331)
T 3r7w_B          151 -FYLTSIFD-HSIYEAFSRIVQKLIPE  175 (331)
T ss_dssp             -EECCCSSS-SHHHHHHHHHHTTSSTT
T ss_pred             -EEEeccCC-CcHHHHHHHHHHHHHhh
Confidence             99999987 69999999999887654

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.95  E-value=1.6e-27  Score=176.30  Aligned_cols=165  Identities=15%  Similarity=0.130  Sum_probs=115.4

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCC-CcCccccccceeEEECCEEEEEEEEEcCCCc------c----cccccc
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTENKFPTD-YVPTVFDNYPDTITVDNKTYDVTLWDTAGQE------D----YERLRP   89 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~------~----~~~~~~   89 (205)
                      ...+||+|+|.+|+|||||+++|.++.+... +..++..........++  ..+.+||+||+.      .    +..+ .
T Consensus        27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~-~  103 (228)
T 2qu8_A           27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTTI-T  103 (228)
T ss_dssp             TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHHH-H
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHHH-H
Confidence            5679999999999999999999999876421 11111111122233344  679999999983      3    2222 2


Q ss_pred             cCcCCCcEEEEEEECCCcchHHHH-HHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHH---HHHHH
Q psy15714         90 MSYPNTDCFLLCFSIGSTSSYENI-LSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTS---QGKKM  165 (205)
Q Consensus        90 ~~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---~~~~~  165 (205)
                      .++..+|++++|||++++.++... ...|+..+....+++|+++|+||+|+...+            .+..+   ....+
T Consensus       104 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~------------~~~~~~~~~~~~~  171 (228)
T 2qu8_A          104 ALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMD------------SLSIDNKLLIKQI  171 (228)
T ss_dssp             HHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--------------CCCHHHHHHHHHH
T ss_pred             HhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCch------------hhHHHHHHHHHHH
Confidence            346788999999999998776421 125666666655689999999999997654            33332   45666


Q ss_pred             HHHcC-CceEEEcccCCCCCHHHHHHHHHHHHHhhc
Q psy15714        166 RRKIK-AAEYLECSAKLNEGLDQVFIAAVRSAVKKQ  200 (205)
Q Consensus       166 ~~~~~-~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~  200 (205)
                      ++..+ ..+++++||++|+|++++|++|.+.+.+.+
T Consensus       172 ~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~  207 (228)
T 2qu8_A          172 LDNVKNPIKFSSFSTLTGVGVEQAKITACELLKNDQ  207 (228)
T ss_dssp             HHHCCSCEEEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred             HHhcCCCceEEEEecccCCCHHHHHHHHHHHHHHHH
Confidence            66665 234999999999999999999999887653

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.95  E-value=2.2e-27  Score=171.27  Aligned_cols=162  Identities=15%  Similarity=0.186  Sum_probs=108.9

Q ss_pred             ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccc-eeEEECCEEEEEEEEEcCC----------Ccccccc
Q psy15714         19 SVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYP-DTITVDNKTYDVTLWDTAG----------QEDYERL   87 (205)
Q Consensus        19 ~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g----------~~~~~~~   87 (205)
                      .....++|+|+|.+|+|||||++++.++.+...+.++.+.... .....++   .+.+||+||          ++.+...
T Consensus        19 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~   95 (195)
T 1svi_A           19 PEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRM   95 (195)
T ss_dssp             CCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHH
Confidence            3456799999999999999999999998866655555554443 2233443   589999999          6667766


Q ss_pred             cccCcCCC---cEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHH
Q psy15714         88 RPMSYPNT---DCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKK  164 (205)
Q Consensus        88 ~~~~~~~~---~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  164 (205)
                      +..+++.+   |++++|+|++++.++...  .++..+...  ++|+++|+||+|+...+..          ....++...
T Consensus        96 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~--~~~~~~~~~--~~p~i~v~nK~Dl~~~~~~----------~~~~~~~~~  161 (195)
T 1svi_A           96 IETYITTREELKAVVQIVDLRHAPSNDDV--QMYEFLKYY--GIPVIVIATKADKIPKGKW----------DKHAKVVRQ  161 (195)
T ss_dssp             HHHHHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHHT--TCCEEEEEECGGGSCGGGH----------HHHHHHHHH
T ss_pred             HHHHHhhhhcCCEEEEEEECCCCCCHHHH--HHHHHHHHc--CCCEEEEEECcccCChHHH----------HHHHHHHHH
Confidence            66666555   999999999998877764  344444443  8999999999999765411          011123333


Q ss_pred             HHHHcCCceEEEcccCCCCCHHHHHHHHHHHHH
Q psy15714        165 MRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV  197 (205)
Q Consensus       165 ~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~  197 (205)
                      ........+++++||++++|++++|+++.+.+.
T Consensus       162 ~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~  194 (195)
T 1svi_A          162 TLNIDPEDELILFSSETKKGKDEAWGAIKKMIN  194 (195)
T ss_dssp             HHTCCTTSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred             HHcccCCCceEEEEccCCCCHHHHHHHHHHHhc
Confidence            122223345999999999999999999988763

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.95  E-value=3.3e-27  Score=170.07  Aligned_cols=163  Identities=17%  Similarity=0.105  Sum_probs=116.3

Q ss_pred             ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCC----------Cccccccc
Q psy15714         19 SVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAG----------QEDYERLR   88 (205)
Q Consensus        19 ~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g----------~~~~~~~~   88 (205)
                      .....+||+++|.+|+|||||++++.+..+ ..+.++.+..........+  ..+.+||+||          ++.++.++
T Consensus        19 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~t~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   95 (195)
T 3pqc_A           19 PPPLKGEVAFVGRSNVGKSSLLNALFNRKI-AFVSKTPGKTRSINFYLVN--SKYYFVDLPGYGYAKVSKKERMLWKRLV   95 (195)
T ss_dssp             CCCTTCEEEEEEBTTSSHHHHHHHHHTSCC-SCCCSSCCCCCCEEEEEET--TTEEEEECCCBSSSCCCHHHHHHHHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHcCcc-ccccCCCCCccCeEEEEEC--CcEEEEECCCCccccCChhhHHHHHHHH
Confidence            345678999999999999999999999874 3334444444332222112  2578999999          55666665


Q ss_pred             ccCcCC---CcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHH
Q psy15714         89 PMSYPN---TDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKM  165 (205)
Q Consensus        89 ~~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (205)
                      ..+++.   ++++++|+|+++..+....  .+...+...  ++|+++|+||+|+......          ....++++.+
T Consensus        96 ~~~~~~~~~~~~vi~v~d~~~~~~~~~~--~~~~~~~~~--~~p~i~v~nK~Dl~~~~~~----------~~~~~~~~~~  161 (195)
T 3pqc_A           96 EDYFKNRWSLQMVFLLVDGRIPPQDSDL--MMVEWMKSL--NIPFTIVLTKMDKVKMSER----------AKKLEEHRKV  161 (195)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHHT--TCCEEEEEECGGGSCGGGH----------HHHHHHHHHH
T ss_pred             HHHHhcCcCceEEEEEecCCCCCCHHHH--HHHHHHHHc--CCCEEEEEEChhcCChHHH----------HHHHHHHHHH
Confidence            555554   4999999999877554433  233444444  8999999999999754321          3445667777


Q ss_pred             HHHcCCceEEEcccCCCCCHHHHHHHHHHHHHh
Q psy15714        166 RRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVK  198 (205)
Q Consensus       166 ~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  198 (205)
                      +...+..+++++||++|+|++++|+++.+.+.+
T Consensus       162 ~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~~  194 (195)
T 3pqc_A          162 FSKYGEYTIIPTSSVTGEGISELLDLISTLLKE  194 (195)
T ss_dssp             HHSSCCSCEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred             HhhcCCCceEEEecCCCCCHHHHHHHHHHHhhc
Confidence            777665569999999999999999999987753

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.95  E-value=5.4e-27  Score=164.02  Aligned_cols=150  Identities=19%  Similarity=0.168  Sum_probs=106.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCC--CCCcCccccccceeEEECCEEEEEEEEEcCCCccc-------ccccccCcCC
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTENKFP--TDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY-------ERLRPMSYPN   94 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-------~~~~~~~~~~   94 (205)
                      .||+++|++|+|||||++++.++.+.  ..+.++........+..++.  .+.+||+||+..+       ...+..+++.
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~   79 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALED   79 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence            58999999999999999999988753  23333333333445666664  6899999998873       3445567899


Q ss_pred             CcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceE
Q psy15714         95 TDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEY  174 (205)
Q Consensus        95 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (205)
                      +|++++|+|+++..+....  .+...+...  ++|+++|+||+|+....                +++..++ ..+..++
T Consensus        80 ~~~~i~v~d~~~~~~~~~~--~~~~~~~~~--~~p~ilv~nK~Dl~~~~----------------~~~~~~~-~~~~~~~  138 (161)
T 2dyk_A           80 AEVVLFAVDGRAELTQADY--EVAEYLRRK--GKPVILVATKVDDPKHE----------------LYLGPLY-GLGFGDP  138 (161)
T ss_dssp             CSEEEEEEESSSCCCHHHH--HHHHHHHHH--TCCEEEEEECCCSGGGG----------------GGCGGGG-GGSSCSC
T ss_pred             CCEEEEEEECCCcccHhHH--HHHHHHHhc--CCCEEEEEECcccccch----------------HhHHHHH-hCCCCCe
Confidence            9999999999986554331  344444444  89999999999997642                1122233 4566459


Q ss_pred             EEcccCCCCCHHHHHHHHHHHH
Q psy15714        175 LECSAKLNEGLDQVFIAAVRSA  196 (205)
Q Consensus       175 ~~~Sa~~~~~i~~~~~~i~~~~  196 (205)
                      +++||++|.|++++|+++.+.+
T Consensus       139 ~~~Sa~~~~gv~~l~~~l~~~l  160 (161)
T 2dyk_A          139 IPTSSEHARGLEELLEAIWERL  160 (161)
T ss_dssp             EECBTTTTBSHHHHHHHHHHHC
T ss_pred             EEEecccCCChHHHHHHHHHhC
Confidence            9999999999999999998764

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.95  E-value=2.1e-27  Score=170.53  Aligned_cols=159  Identities=16%  Similarity=0.181  Sum_probs=117.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCC-----------CcccccccccCc
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAG-----------QEDYERLRPMSY   92 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g-----------~~~~~~~~~~~~   92 (205)
                      +||+++|++|+|||||++++.++.+...+.++.... ...+...    .+.+||+||           ++.++..+..++
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~-~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~   76 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRK-IIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFI   76 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTS-CEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccce-eEEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHHH
Confidence            689999999999999999999998876655543222 2333333    589999999           566777666676


Q ss_pred             CC-CcEEEEEEECCCcchHHHHHHHHHHH---------HhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHH
Q psy15714         93 PN-TDCFLLCFSIGSTSSYENILSKWYPE---------LKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQ  161 (205)
Q Consensus        93 ~~-~~~~i~v~d~~~~~s~~~~~~~~~~~---------~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~  161 (205)
                      +. +++++++|++.|..++.++...|...         +.... .++|+++|+||+|+....               .++
T Consensus        77 ~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---------------~~~  141 (190)
T 2cxx_A           77 EDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV---------------QEV  141 (190)
T ss_dssp             HHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH---------------HHH
T ss_pred             HhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH---------------HHH
Confidence            66 77777777777777887775567542         12111 589999999999987642               456


Q ss_pred             HHHHHHHcCCc------eEEEcccCCCCCHHHHHHHHHHHHHhhccc
Q psy15714        162 GKKMRRKIKAA------EYLECSAKLNEGLDQVFIAAVRSAVKKQDK  202 (205)
Q Consensus       162 ~~~~~~~~~~~------~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~~  202 (205)
                      ++.+++.++..      +++++||++|+|++++|+++.+.+...+++
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~~  188 (190)
T 2cxx_A          142 INFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQGR  188 (190)
T ss_dssp             HHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcchhhcc
Confidence            67777777763      379999999999999999999998776543

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.94  E-value=5e-27  Score=168.46  Aligned_cols=159  Identities=15%  Similarity=0.117  Sum_probs=117.5

Q ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccc-ccceeEEECCEEEEEEEEEcCCCcccc------cccccCc
Q psy15714         20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFD-NYPDTITVDNKTYDVTLWDTAGQEDYE------RLRPMSY   92 (205)
Q Consensus        20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~~   92 (205)
                      +.+.++|+++|++|+|||||++++.+..+.....++... .....+..++  ..+.+||+||++.+.      .++..++
T Consensus         4 ~~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~   81 (188)
T 2wjg_A            4 HMKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYI   81 (188)
T ss_dssp             CCCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHH
Confidence            346799999999999999999999987653332333222 2234455565  679999999998774      2344444


Q ss_pred             C--CCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcC
Q psy15714         93 P--NTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIK  170 (205)
Q Consensus        93 ~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (205)
                      .  .++++++|+|+++   ++... .|+..+...  +.|+++|+||+|+....            .+. ++++.+++.++
T Consensus        82 ~~~~~~~~i~v~d~~~---~~~~~-~~~~~~~~~--~~piilv~nK~Dl~~~~------------~~~-~~~~~~~~~~~  142 (188)
T 2wjg_A           82 INEKPDLVVNIVDATA---LERNL-YLTLQLMEM--GANLLLALNKMDLAKSL------------GIE-IDVDKLEKILG  142 (188)
T ss_dssp             HHHCCSEEEEEEEGGG---HHHHH-HHHHHHHTT--TCCEEEEEECHHHHHHT------------TCC-CCHHHHHHHHT
T ss_pred             hccCCCEEEEEecchh---HHHHH-HHHHHHHhc--CCCEEEEEEhhhccccc------------cch-HHHHHHHHHhC
Confidence            3  5899999999875   44444 677766654  89999999999986543            222 35667777778


Q ss_pred             CceEEEcccCCCCCHHHHHHHHHHHHHhhc
Q psy15714        171 AAEYLECSAKLNEGLDQVFIAAVRSAVKKQ  200 (205)
Q Consensus       171 ~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~  200 (205)
                      .. ++++||+++.|++++|+++.+.+....
T Consensus       143 ~~-~~~~Sa~~~~~v~~l~~~i~~~~~~~~  171 (188)
T 2wjg_A          143 VK-VVPLSAAKKMGIEELKKAISIAVKDKK  171 (188)
T ss_dssp             SC-EEECBGGGTBSHHHHHHHHHHHHTTC-
T ss_pred             CC-eEEEEecCCCCHHHHHHHHHHHHHhcc
Confidence            76 999999999999999999999876544

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.94  E-value=1.6e-27  Score=196.41  Aligned_cols=164  Identities=21%  Similarity=0.266  Sum_probs=123.7

Q ss_pred             ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccccee-------E--EECCEEEEEEEEEcCCCcccccccc
Q psy15714         19 SVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDT-------I--TVDNKTYDVTLWDTAGQEDYERLRP   89 (205)
Q Consensus        19 ~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~-------~--~~~~~~~~~~i~D~~g~~~~~~~~~   89 (205)
                      .....+||+++|.+|+|||||++++.++.+...+.+|++..+...       +  ..++..+.+.+||+||++.++.+..
T Consensus        37 ~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~  116 (535)
T 3dpu_A           37 VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ  116 (535)
T ss_dssp             BCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH
T ss_pred             ccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH
Confidence            456789999999999999999999999998877778776665321       1  1233457899999999999999998


Q ss_pred             cCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHc
Q psy15714         90 MSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKI  169 (205)
Q Consensus        90 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (205)
                      .+++.+|++|+|||+++.+   .+. .|+..+..+.++.|+++|+||+|+...+            .+..++++.++...
T Consensus       117 ~~l~~~d~ii~V~D~s~~~---~~~-~~~~~l~~~~~~~pvilV~NK~Dl~~~~------------~v~~~~~~~~~~~~  180 (535)
T 3dpu_A          117 FFMTRSSVYMLLLDSRTDS---NKH-YWLRHIEKYGGKSPVIVVMNKIDENPSY------------NIEQKKINERFPAI  180 (535)
T ss_dssp             HHHHSSEEEEEEECGGGGG---GHH-HHHHHHHHHSSSCCEEEEECCTTTCTTC------------CCCHHHHHHHCGGG
T ss_pred             HHccCCcEEEEEEeCCCch---hHH-HHHHHHHHhCCCCCEEEEEECCCccccc------------ccCHHHHHHHHHhc
Confidence            8999999999999997653   344 7888898887789999999999997654            66777888888888


Q ss_pred             CCceEEEcccCCCCCHHHHHHHHHHHHHhh
Q psy15714        170 KAAEYLECSAKLNEGLDQVFIAAVRSAVKK  199 (205)
Q Consensus       170 ~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  199 (205)
                      +.. ++++||++|.|++++|+++.+.+...
T Consensus       181 ~~~-~~~vSA~~g~gi~eL~~~l~~~~~~~  209 (535)
T 3dpu_A          181 ENR-FHRISCKNGDGVESIAKSLKSAVLHP  209 (535)
T ss_dssp             TTC-EEECCC-----CTTHHHHHHHHHTCT
T ss_pred             CCc-eEEEecCcccCHHHHHHHHHHHHhcc
Confidence            876 99999999999999999999987654

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.94  E-value=2.2e-26  Score=163.20  Aligned_cols=153  Identities=24%  Similarity=0.254  Sum_probs=110.6

Q ss_pred             eeeEEEEECCCCCCHHHHHHHHhcCCCC--CCCcCccccccceeEEECCEEEEEEEEEcCCCcccccc--------cccC
Q psy15714         22 KALKVTTVGDGMVGKTCLLITHTENKFP--TDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERL--------RPMS   91 (205)
Q Consensus        22 ~~~ki~v~G~~~~GKstli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~   91 (205)
                      ...||+++|.+|+|||||++++.+..+.  ..+.++........+.+++.  .+.+||+||...+...        ...+
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   80 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGM--PLHIIDTAGLREASDEVERIGIERAWQE   80 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTE--EEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCe--EEEEEECCCcccchhHHHHHHHHHHHHH
Confidence            3479999999999999999999987642  33344434444556777774  4889999998653211        1135


Q ss_pred             cCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcC
Q psy15714         92 YPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIK  170 (205)
Q Consensus        92 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (205)
                      ++.+|++++|||++++.++...  .|+..+.... .++|+++|+||+|+.....           ..        ++.. 
T Consensus        81 ~~~ad~~i~v~D~~~~~s~~~~--~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-----------~~--------~~~~-  138 (172)
T 2gj8_A           81 IEQADRVLFMVDGTTTDAVDPA--EIWPEFIARLPAKLPITVVRNKADITGETL-----------GM--------SEVN-  138 (172)
T ss_dssp             HHTCSEEEEEEETTTCCCCSHH--HHCHHHHHHSCTTCCEEEEEECHHHHCCCC-----------EE--------EEET-
T ss_pred             HHhCCEEEEEEECCCCCCHHHH--HHHHHHHHhcccCCCEEEEEECccCCcchh-----------hh--------hhcc-
Confidence            7899999999999998887643  6777776654 5799999999999864310           00        0112 


Q ss_pred             CceEEEcccCCCCCHHHHHHHHHHHHHh
Q psy15714        171 AAEYLECSAKLNEGLDQVFIAAVRSAVK  198 (205)
Q Consensus       171 ~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  198 (205)
                      ..+++++||++|.|++++|+++.+.+..
T Consensus       139 ~~~~~~~SA~~g~gv~~l~~~l~~~~~~  166 (172)
T 2gj8_A          139 GHALIRLSARTGEGVDVLRNHLKQSMGF  166 (172)
T ss_dssp             TEEEEECCTTTCTTHHHHHHHHHHHC--
T ss_pred             CCceEEEeCCCCCCHHHHHHHHHHHhhh
Confidence            2359999999999999999999887543

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.94  E-value=1.2e-25  Score=173.28  Aligned_cols=164  Identities=18%  Similarity=0.116  Sum_probs=124.7

Q ss_pred             ccceeeEEEEECCCCCCHHHHHHHHhcCCCCC--CCcCccccccceeEEECCEEEEEEEEEcCCCcccc----------c
Q psy15714         19 SVHKALKVTTVGDGMVGKTCLLITHTENKFPT--DYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYE----------R   86 (205)
Q Consensus        19 ~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~----------~   86 (205)
                      .+...-.|+++|.+|+|||||++++.+.++..  ....++..........+ ...++.+|||||...+.          .
T Consensus         6 ~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~-~~~~i~lvDTPG~~~~~~~~~l~~~~~~   84 (308)
T 3iev_A            6 HHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIP-NEAQIIFLDTPGIYEPKKSDVLGHSMVE   84 (308)
T ss_dssp             -CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET-TTEEEEEEECCCCCCCCTTCHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecC-CCCeEEEEECcCCCccccchhHHHHHHH
Confidence            45667899999999999999999999988753  22223222222233344 13679999999986544          3


Q ss_pred             ccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHH
Q psy15714         87 LRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMR  166 (205)
Q Consensus        87 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (205)
                      ....++..+|++++|+|+++..+..+.. .|+..+...  ++|+++|+||+|+....            ....+....+.
T Consensus        85 ~~~~~l~~aD~il~VvD~~~~~~~~~~~-~~~~~l~~~--~~pvilV~NK~Dl~~~~------------~~~~~~~~~l~  149 (308)
T 3iev_A           85 IAKQSLEEADVILFMIDATEGWRPRDEE-IYQNFIKPL--NKPVIVVINKIDKIGPA------------KNVLPLIDEIH  149 (308)
T ss_dssp             HHHHHHHHCSEEEEEEETTTBSCHHHHH-HHHHHTGGG--CCCEEEEEECGGGSSSG------------GGGHHHHHHHH
T ss_pred             HHHHHhhcCCEEEEEEeCCCCCCchhHH-HHHHHHHhc--CCCEEEEEECccCCCCH------------HHHHHHHHHHH
Confidence            4456788999999999999998888865 678888775  89999999999997332            44456667777


Q ss_pred             HHcC-CceEEEcccCCCCCHHHHHHHHHHHHHh
Q psy15714        167 RKIK-AAEYLECSAKLNEGLDQVFIAAVRSAVK  198 (205)
Q Consensus       167 ~~~~-~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  198 (205)
                      +.++ ..+++++||++|.|++++|+++.+.+..
T Consensus       150 ~~~~~~~~i~~vSA~~g~gv~~L~~~l~~~l~~  182 (308)
T 3iev_A          150 KKHPELTEIVPISALKGANLDELVKTILKYLPE  182 (308)
T ss_dssp             HHCTTCCCEEECBTTTTBSHHHHHHHHHHHSCB
T ss_pred             HhccCCCeEEEEeCCCCCCHHHHHHHHHHhCcc
Confidence            7774 4559999999999999999999987654

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.94  E-value=8.5e-26  Score=169.85  Aligned_cols=155  Identities=19%  Similarity=0.149  Sum_probs=115.0

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcC-ccccccceeEEECCEEEEEEEEEcCCCccccccc------ccCc-
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVP-TVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLR------PMSY-   92 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~------~~~~-   92 (205)
                      .+.++|+++|++|+|||||+++|.+..+.....+ ++.......+..++  ..+.+||+||...+...+      +.++ 
T Consensus         3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~~   80 (258)
T 3a1s_A            3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDYLL   80 (258)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence            4678999999999999999999998775322122 21111122333444  689999999998776532      3444 


Q ss_pred             -CCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCC
Q psy15714         93 -PNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKA  171 (205)
Q Consensus        93 -~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (205)
                       ..+|++++|+|+++.++..    +|...+...  ++|+++|+||+|+...+            .+. .+...+++.+++
T Consensus        81 ~~~~d~ii~V~D~t~~~~~~----~~~~~l~~~--~~pvilv~NK~Dl~~~~------------~i~-~~~~~l~~~lg~  141 (258)
T 3a1s_A           81 KGDADLVILVADSVNPEQSL----YLLLEILEM--EKKVILAMTAIDEAKKT------------GMK-IDRYELQKHLGI  141 (258)
T ss_dssp             HSCCSEEEEEEETTSCHHHH----HHHHHHHTT--TCCEEEEEECHHHHHHT------------TCC-BCHHHHHHHHCS
T ss_pred             hcCCCEEEEEeCCCchhhHH----HHHHHHHhc--CCCEEEEEECcCCCCcc------------chH-HHHHHHHHHcCC
Confidence             6899999999999876532    455556555  89999999999986543            232 236778888887


Q ss_pred             ceEEEcccCCCCCHHHHHHHHHHHHH
Q psy15714        172 AEYLECSAKLNEGLDQVFIAAVRSAV  197 (205)
Q Consensus       172 ~~~~~~Sa~~~~~i~~~~~~i~~~~~  197 (205)
                      . ++++||++|.|++++|+++.+.+.
T Consensus       142 ~-vi~~SA~~g~gi~el~~~i~~~~~  166 (258)
T 3a1s_A          142 P-VVFTSSVTGEGLEELKEKIVEYAQ  166 (258)
T ss_dssp             C-EEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             C-EEEEEeeCCcCHHHHHHHHHHHhh
Confidence            6 999999999999999999998765

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.93  E-value=9.1e-26  Score=166.15  Aligned_cols=168  Identities=14%  Similarity=0.026  Sum_probs=110.9

Q ss_pred             cccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccc-eeEEEC-CEEEEEEEEEcCCC----------cccc
Q psy15714         18 KSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYP-DTITVD-NKTYDVTLWDTAGQ----------EDYE   85 (205)
Q Consensus        18 ~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~-~~~~~~-~~~~~~~i~D~~g~----------~~~~   85 (205)
                      ......++|+|+|.+|+|||||++++.+.........+.+.... ....+. .....+.||||||.          +.+.
T Consensus        24 ~~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~  103 (223)
T 4dhe_A           24 LPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWE  103 (223)
T ss_dssp             SCCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHH
T ss_pred             CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHH
Confidence            34456789999999999999999999998732222222222221 222333 33367999999994          3334


Q ss_pred             cccccCcC---CCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHH
Q psy15714         86 RLRPMSYP---NTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQG  162 (205)
Q Consensus        86 ~~~~~~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  162 (205)
                      .....++.   .+|++++|+|+++..+...  ..|+..+...  ++|+++|+||+|+.......          ...++.
T Consensus       104 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~--~~~~~~l~~~--~~p~i~v~nK~Dl~~~~~~~----------~~~~~~  169 (223)
T 4dhe_A          104 QLLSSYLQTRPQLCGMILMMDARRPLTELD--RRMIEWFAPT--GKPIHSLLTKCDKLTRQESI----------NALRAT  169 (223)
T ss_dssp             HHHHHHHHHCTTEEEEEEEEETTSCCCHHH--HHHHHHHGGG--CCCEEEEEECGGGSCHHHHH----------HHHHHH
T ss_pred             HHHHHHHhcCcCcCEEEEEEeCCCCCCHHH--HHHHHHHHhc--CCCEEEEEeccccCChhhHH----------HHHHHH
Confidence            44434443   4888999999988655333  2566777664  89999999999997643211          011222


Q ss_pred             HHHHHH------cCCceEEEcccCCCCCHHHHHHHHHHHHHhh
Q psy15714        163 KKMRRK------IKAAEYLECSAKLNEGLDQVFIAAVRSAVKK  199 (205)
Q Consensus       163 ~~~~~~------~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  199 (205)
                      ......      ....+++++||++|.|++++|++|.+.+...
T Consensus       170 ~~~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~  212 (223)
T 4dhe_A          170 QKSLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIESWLRPA  212 (223)
T ss_dssp             HHHHHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC--
T ss_pred             HHHHHhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCcc
Confidence            222223      2445699999999999999999999887654

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.93  E-value=2.5e-25  Score=168.32  Aligned_cols=151  Identities=16%  Similarity=0.141  Sum_probs=112.6

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCC-CCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccc------cccccCcC-
Q psy15714         23 ALKVTTVGDGMVGKTCLLITHTENKF-PTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYE------RLRPMSYP-   93 (205)
Q Consensus        23 ~~ki~v~G~~~~GKstli~~~~~~~~-~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~~~-   93 (205)
                      .++|+++|++|+|||||+++|.+... ...+.   +..+ .....+.. ...+.+||+||+..+.      .+.+.++. 
T Consensus         3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~p---g~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~   78 (272)
T 3b1v_A            3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWP---GVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLS   78 (272)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSS---CCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHCCCCcccCCC---CCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhc
Confidence            57999999999999999999998763 33332   2222 23444554 5679999999998775      23344453 


Q ss_pred             -CCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCc
Q psy15714         94 -NTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAA  172 (205)
Q Consensus        94 -~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (205)
                       .+|++++|+|+++.++.   . .|...+...  ++|+++|+||+|+....            .+. .+...+++.+++.
T Consensus        79 ~~~d~vi~V~D~t~~e~~---~-~~~~~l~~~--~~p~ilv~NK~Dl~~~~------------~~~-~~~~~l~~~lg~~  139 (272)
T 3b1v_A           79 QRADSILNVVDATNLERN---L-YLTTQLIET--GIPVTIALNMIDVLDGQ------------GKK-INVDKLSYHLGVP  139 (272)
T ss_dssp             TCCSEEEEEEEGGGHHHH---H-HHHHHHHHT--CSCEEEEEECHHHHHHT------------TCC-CCHHHHHHHHTSC
T ss_pred             CCCCEEEEEecCCchHhH---H-HHHHHHHhc--CCCEEEEEEChhhCCcC------------CcH-HHHHHHHHHcCCC
Confidence             69999999999886543   2 465556554  89999999999986543            222 3456777788876


Q ss_pred             eEEEcccCCCCCHHHHHHHHHHHHH
Q psy15714        173 EYLECSAKLNEGLDQVFIAAVRSAV  197 (205)
Q Consensus       173 ~~~~~Sa~~~~~i~~~~~~i~~~~~  197 (205)
                       ++++||++|.|++++|+++.+.+.
T Consensus       140 -vi~~SA~~g~gi~el~~~i~~~~~  163 (272)
T 3b1v_A          140 -VVATSALKQTGVDQVVKKAAHTTT  163 (272)
T ss_dssp             -EEECBTTTTBSHHHHHHHHHHSCT
T ss_pred             -EEEEEccCCCCHHHHHHHHHHHHh
Confidence             999999999999999999988653

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.92  E-value=1.9e-25  Score=167.77  Aligned_cols=150  Identities=13%  Similarity=0.154  Sum_probs=109.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCcC-ccccccceeEEECCEEEEEEEEEcCCCccccc----------ccccCc
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVP-TVFDNYPDTITVDNKTYDVTLWDTAGQEDYER----------LRPMSY   92 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~----------~~~~~~   92 (205)
                      .+|+++|.+|+|||||++++.+..+.....+ ++.......+..++.  .+.+||+||...+..          +.+.++
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~   79 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSV   79 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence            3899999999999999999998864322222 222222345556664  799999999877654          344556


Q ss_pred             --CCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcC
Q psy15714         93 --PNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIK  170 (205)
Q Consensus        93 --~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (205)
                        ..+|++++|+|+++.++...    +...+...  ++|+++|+||+|+...+            .+. .....+++.++
T Consensus        80 ~~~~~d~vi~VvDas~~~~~~~----l~~~l~~~--~~pvilv~NK~Dl~~~~------------~~~-~~~~~l~~~lg  140 (256)
T 3iby_A           80 IDLEYDCIINVIDACHLERHLY----LTSQLFEL--GKPVVVALNMMDIAEHR------------GIS-IDTEKLESLLG  140 (256)
T ss_dssp             HHSCCSEEEEEEEGGGHHHHHH----HHHHHTTS--CSCEEEEEECHHHHHHT------------TCE-ECHHHHHHHHC
T ss_pred             hhCCCCEEEEEeeCCCchhHHH----HHHHHHHc--CCCEEEEEEChhcCCcC------------CcH-HHHHHHHHHcC
Confidence              88999999999998655443    33444444  89999999999987543            111 12445777778


Q ss_pred             CceEEEcccCCCCCHHHHHHHHHHH
Q psy15714        171 AAEYLECSAKLNEGLDQVFIAAVRS  195 (205)
Q Consensus       171 ~~~~~~~Sa~~~~~i~~~~~~i~~~  195 (205)
                      .. ++++||++|.|++++|+++.+.
T Consensus       141 ~~-vi~~SA~~g~gi~el~~~i~~~  164 (256)
T 3iby_A          141 CS-VIPIQAHKNIGIPALQQSLLHC  164 (256)
T ss_dssp             SC-EEECBGGGTBSHHHHHHHHHTC
T ss_pred             CC-EEEEECCCCCCHHHHHHHHHhh
Confidence            76 9999999999999999999875

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.92  E-value=2.5e-24  Score=165.06  Aligned_cols=158  Identities=19%  Similarity=0.138  Sum_probs=111.7

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCC--CCcCccccccceeEEECCEEEEEEEEEcCCCcc--------ccccccc
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTENKFPT--DYVPTVFDNYPDTITVDNKTYDVTLWDTAGQED--------YERLRPM   90 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~   90 (205)
                      .+..+|+++|.+|+|||||++++++.++..  ....|+..........++  .++.+|||||...        +......
T Consensus         5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~--~~l~l~DTpG~~~~~~~l~~~~~~~~~~   82 (301)
T 1wf3_A            5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR--RQIVFVDTPGLHKPMDALGEFMDQEVYE   82 (301)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT--EEEEEEECCCCCCCCSHHHHHHHHHHHH
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCC--cEEEEecCccccchhhHHHHHHHHHHHH
Confidence            456789999999999999999999988742  222233222222233333  6799999999876        3344456


Q ss_pred             CcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcC
Q psy15714         91 SYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIK  170 (205)
Q Consensus        91 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (205)
                      +++.+|++++|+|++++.+..+  ..++..+....+++|+++|+||+|+.....           .+ .+.+..+   .+
T Consensus        83 ~l~~ad~il~VvD~~~~~~~~~--~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~-----------~~-~~~~~~~---~~  145 (301)
T 1wf3_A           83 ALADVNAVVWVVDLRHPPTPED--ELVARALKPLVGKVPILLVGNKLDAAKYPE-----------EA-MKAYHEL---LP  145 (301)
T ss_dssp             HTSSCSEEEEEEETTSCCCHHH--HHHHHHHGGGTTTSCEEEEEECGGGCSSHH-----------HH-HHHHHHT---ST
T ss_pred             HHhcCCEEEEEEECCCCCChHH--HHHHHHHHhhcCCCCEEEEEECcccCCchH-----------HH-HHHHHHh---cC
Confidence            7899999999999998765543  234456665556899999999999976431           01 1222222   34


Q ss_pred             CceEEEcccCCCCCHHHHHHHHHHHHH
Q psy15714        171 AAEYLECSAKLNEGLDQVFIAAVRSAV  197 (205)
Q Consensus       171 ~~~~~~~Sa~~~~~i~~~~~~i~~~~~  197 (205)
                      ..+++++||++|.|++++|+++.+.+.
T Consensus       146 ~~~~~~iSA~~g~gv~~l~~~l~~~l~  172 (301)
T 1wf3_A          146 EAEPRMLSALDERQVAELKADLLALMP  172 (301)
T ss_dssp             TSEEEECCTTCHHHHHHHHHHHHTTCC
T ss_pred             cCcEEEEeCCCCCCHHHHHHHHHHhcc
Confidence            455899999999999999999987653

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.92  E-value=2.1e-24  Score=174.54  Aligned_cols=157  Identities=18%  Similarity=0.164  Sum_probs=99.6

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCC--CCCCcCccccccceeEEECCEEEEEEEEEcCCCccccccc--------cc
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTENKF--PTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLR--------PM   90 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~--------~~   90 (205)
                      ...++|+++|.+|+|||||+++|.+...  ...+.+++.+.....+.+++  +.+.+|||||...+....        ..
T Consensus       231 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~  308 (476)
T 3gee_A          231 SEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRM  308 (476)
T ss_dssp             HHCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------C
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHh
Confidence            3568999999999999999999998753  34445555555566777777  569999999987765432        34


Q ss_pred             CcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcC
Q psy15714         91 SYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIK  170 (205)
Q Consensus        91 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (205)
                      +++.+|++++|+|++++.++..+. .+...+... .++|+++|+||+|+.....            ..   .+.+.+. +
T Consensus       309 ~~~~aD~vl~VvD~s~~~s~~~~~-~~~~~l~~l-~~~piIvV~NK~Dl~~~~~------------~~---~~~l~~~-~  370 (476)
T 3gee_A          309 KMAEADLILYLLDLGTERLDDELT-EIRELKAAH-PAAKFLTVANKLDRAANAD------------AL---IRAIADG-T  370 (476)
T ss_dssp             CCSSCSEEEEEEETTTCSSGGGHH-HHHHHHHHC-TTSEEEEEEECTTSCTTTH------------HH---HHHHHHH-H
T ss_pred             hcccCCEEEEEEECCCCcchhhhH-HHHHHHHhc-CCCCEEEEEECcCCCCccc------------hh---HHHHHhc-C
Confidence            688999999999999988775432 233333322 2799999999999976541            11   1233333 2


Q ss_pred             CceEEEcccCCCCCHHHHHHHHHHHHH
Q psy15714        171 AAEYLECSAKLNEGLDQVFIAAVRSAV  197 (205)
Q Consensus       171 ~~~~~~~Sa~~~~~i~~~~~~i~~~~~  197 (205)
                      ..+++++||++|.|++++|+++.+.+.
T Consensus       371 ~~~~i~vSAktg~GI~eL~~~i~~~~~  397 (476)
T 3gee_A          371 GTEVIGISALNGDGIDTLKQHMGDLVK  397 (476)
T ss_dssp             TSCEEECBTTTTBSHHHHHHHHTHHHH
T ss_pred             CCceEEEEECCCCCHHHHHHHHHHHHh
Confidence            245999999999999999999999886

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.92  E-value=1.5e-24  Score=164.42  Aligned_cols=157  Identities=22%  Similarity=0.132  Sum_probs=114.0

Q ss_pred             eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCccccc------ccccCc--
Q psy15714         22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYER------LRPMSY--   92 (205)
Q Consensus        22 ~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~--   92 (205)
                      +.++|+++|++|+|||||++++.+..+.....++..... ...+..++  ..+.+||+||...+..      ..+.++  
T Consensus         2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~   79 (271)
T 3k53_A            2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYRE--KEFLVVDLPGIYSLTAHSIDELIARNFILD   79 (271)
T ss_dssp             CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETT--EEEEEEECCCCSCCCSSCHHHHHHHHHHHT
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECC--ceEEEEeCCCccccccCCHHHHHHHHhhhc
Confidence            468999999999999999999998876332233222222 33455566  4599999999887765      344444  


Q ss_pred             CCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCc
Q psy15714         93 PNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAA  172 (205)
Q Consensus        93 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (205)
                      ..+|++++|+|+++.+.   .. .|...+... ..+|+++|+||+|+....            .... ....+++.++..
T Consensus        80 ~~~d~vi~v~D~~~~~~---~~-~~~~~~~~~-~~~p~ilv~NK~Dl~~~~------------~~~~-~~~~l~~~lg~~  141 (271)
T 3k53_A           80 GNADVIVDIVDSTCLMR---NL-FLTLELFEM-EVKNIILVLNKFDLLKKK------------GAKI-DIKKMRKELGVP  141 (271)
T ss_dssp             TCCSEEEEEEEGGGHHH---HH-HHHHHHHHT-TCCSEEEEEECHHHHHHH------------TCCC-CHHHHHHHHSSC
T ss_pred             cCCcEEEEEecCCcchh---hH-HHHHHHHhc-CCCCEEEEEEChhcCccc------------ccHH-HHHHHHHHcCCc
Confidence            78999999999987532   22 344444444 139999999999987543            2222 266677788877


Q ss_pred             eEEEcccCCCCCHHHHHHHHHHHHHhh
Q psy15714        173 EYLECSAKLNEGLDQVFIAAVRSAVKK  199 (205)
Q Consensus       173 ~~~~~Sa~~~~~i~~~~~~i~~~~~~~  199 (205)
                       ++++||++|.|++++|+++.+.+...
T Consensus       142 -~~~~Sa~~g~gi~~l~~~i~~~~~~~  167 (271)
T 3k53_A          142 -VIPTNAKKGEGVEELKRMIALMAEGK  167 (271)
T ss_dssp             -EEECBGGGTBTHHHHHHHHHHHHHTC
T ss_pred             -EEEEEeCCCCCHHHHHHHHHHHHhcc
Confidence             99999999999999999999887554

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.92  E-value=1.9e-24  Score=174.79  Aligned_cols=164  Identities=15%  Similarity=0.163  Sum_probs=121.8

Q ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCC--CCCCCcCccccccceeEEECCEEEEEEEEEcCC----------Ccccccc
Q psy15714         20 VHKALKVTTVGDGMVGKTCLLITHTENK--FPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAG----------QEDYERL   87 (205)
Q Consensus        20 ~~~~~ki~v~G~~~~GKstli~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g----------~~~~~~~   87 (205)
                      ....+||+++|.+++|||||++++.+..  ....+.+++.+.....+..++.  .+.||||||          ++.|...
T Consensus       192 ~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~  269 (456)
T 4dcu_A          192 NEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVL  269 (456)
T ss_dssp             CTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHH
T ss_pred             ccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHH
Confidence            3467899999999999999999999765  2344555555555667777775  689999999          6666665


Q ss_pred             cc-cCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHH
Q psy15714         88 RP-MSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMR  166 (205)
Q Consensus        88 ~~-~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (205)
                      .. .+++.+|++++|+|+++..+....  .|...+...  ++|+++|+||+|+...+            ....++..+.+
T Consensus       270 ~~~~~~~~ad~~llviD~~~~~~~~~~--~~~~~~~~~--~~~~ilv~NK~Dl~~~~------------~~~~~~~~~~~  333 (456)
T 4dcu_A          270 RALKAIDRSEVVAVVLDGEEGIIEQDK--RIAGYAHEA--GKAVVIVVNKWDAVDKD------------ESTMKEFEENI  333 (456)
T ss_dssp             HHHHHHHHCSEEEEEEETTTCCCHHHH--HHHHHHHHT--TCEEEEEEECGGGSCCC------------SSHHHHHHHHH
T ss_pred             HHHHHHhhCCEEEEEEeCCCCcCHHHH--HHHHHHHHc--CCCEEEEEEChhcCCCc------------hHHHHHHHHHH
Confidence            44 367889999999999986554443  677777664  89999999999998654            44555555555


Q ss_pred             HHc----CCceEEEcccCCCCCHHHHHHHHHHHHHhhcc
Q psy15714        167 RKI----KAAEYLECSAKLNEGLDQVFIAAVRSAVKKQD  201 (205)
Q Consensus       167 ~~~----~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~  201 (205)
                      +..    +..+++++||++|.|++++|+++.+.+....+
T Consensus       334 ~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~~  372 (456)
T 4dcu_A          334 RDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASENHSL  372 (456)
T ss_dssp             HHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHHHTC
T ss_pred             HHhcccCCCCCEEEEcCCCCcCHHHHHHHHHHHHHHhcc
Confidence            444    34559999999999999999999988766543

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.92  E-value=3.2e-25  Score=168.23  Aligned_cols=154  Identities=14%  Similarity=0.155  Sum_probs=110.6

Q ss_pred             eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcc-ccccceeEEECCEEEEEEEEEcCCCcccccc----------ccc
Q psy15714         22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQEDYERL----------RPM   90 (205)
Q Consensus        22 ~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~----------~~~   90 (205)
                      +.++|+++|.+|+|||||++++.+..+.....+.. .......+..++  ..+.+||+||...+...          .+.
T Consensus         2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~i~~~   79 (274)
T 3i8s_A            2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACH   79 (274)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHHHHHH
Confidence            46899999999999999999999887532222222 222233444455  46888999998876632          122


Q ss_pred             C--cCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHH
Q psy15714         91 S--YPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRK  168 (205)
Q Consensus        91 ~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (205)
                      +  .+.+|++++|+|+++.++..    +|...+...  ++|+++|+||+|+....            .+ ......+++.
T Consensus        80 ~~~~~~~d~ii~VvD~~~~~~~~----~~~~~l~~~--~~p~ivv~NK~Dl~~~~------------~~-~~~~~~l~~~  140 (274)
T 3i8s_A           80 YILSGDADLLINVVDASNLERNL----YLTLQLLEL--GIPCIVALNMLDIAEKQ------------NI-RIEIDALSAR  140 (274)
T ss_dssp             HHHHTCCSEEEEEEEGGGHHHHH----HHHHHHHHH--TCCEEEEEECHHHHHHT------------TE-EECHHHHHHH
T ss_pred             HHhhcCCCEEEEEecCCChHHHH----HHHHHHHhc--CCCEEEEEECccchhhh------------hH-HHHHHHHHHh
Confidence            2  27899999999998865433    444555555  89999999999987543            11 1234567777


Q ss_pred             cCCceEEEcccCCCCCHHHHHHHHHHHHH
Q psy15714        169 IKAAEYLECSAKLNEGLDQVFIAAVRSAV  197 (205)
Q Consensus       169 ~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~  197 (205)
                      +++. ++++||++|.|++++|+++.+.+.
T Consensus       141 lg~~-~i~~SA~~g~gi~el~~~i~~~~~  168 (274)
T 3i8s_A          141 LGCP-VIPLVSTRGRGIEALKLAIDRYKA  168 (274)
T ss_dssp             HTSC-EEECCCGGGHHHHHHHHHHHTCCC
T ss_pred             cCCC-EEEEEcCCCCCHHHHHHHHHHHHh
Confidence            7876 999999999999999999987654

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.91  E-value=1.5e-25  Score=164.48  Aligned_cols=151  Identities=17%  Similarity=0.153  Sum_probs=99.6

Q ss_pred             ccccceeeEEEEECCCCCCHHHHHHHHhcCCCCC---CCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcC
Q psy15714         17 SKSVHKALKVTTVGDGMVGKTCLLITHTENKFPT---DYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYP   93 (205)
Q Consensus        17 ~~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~   93 (205)
                      .......++|+++|++|+|||||++++.+..+..   .+.++....+        ....+.+||+||++.++..+..++.
T Consensus         6 ~~~~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~--------~~~~~~l~Dt~G~~~~~~~~~~~~~   77 (218)
T 1nrj_B            6 IKQKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY--------DGSGVTLVDFPGHVKLRYKLSDYLK   77 (218)
T ss_dssp             ----CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG--------GGSSCEEEECCCCGGGTHHHHHHHH
T ss_pred             CCccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe--------eCceEEEEECCCcHHHHHHHHHHHH
Confidence            3345667899999999999999999999988654   2333333222        3357999999999999888777777


Q ss_pred             C----CcEEEEEEECC-CcchHHHHHHHHHHHHhhh-----CCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHH
Q psy15714         94 N----TDCFLLCFSIG-STSSYENILSKWYPELKHH-----CPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGK  163 (205)
Q Consensus        94 ~----~~~~i~v~d~~-~~~s~~~~~~~~~~~~~~~-----~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  163 (205)
                      .    +|++++|||++ ++.++..+. .|+..+...     ..++|+++|+||+|+..........      ....+++.
T Consensus        78 ~~~~~~~~~i~v~D~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~------~~l~~~~~  150 (218)
T 1nrj_B           78 TRAKFVKGLIFMVDSTVDPKKLTTTA-EFLVDILSITESSCENGIDILIACNKSELFTARPPSKIK------DALESEIQ  150 (218)
T ss_dssp             HHGGGEEEEEEEEETTSCTTCCHHHH-HHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHH------HHHHHHHH
T ss_pred             hccccCCEEEEEEECCCChHHHHHHH-HHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHH------HHHHHHHH
Confidence            6    89999999999 888888887 555554332     2589999999999998765321110      11133344


Q ss_pred             HHHHHcCCceEEEcccCCCC
Q psy15714        164 KMRRKIKAAEYLECSAKLNE  183 (205)
Q Consensus       164 ~~~~~~~~~~~~~~Sa~~~~  183 (205)
                      .++...+.. ++++||+++.
T Consensus       151 ~~~~~~~~~-~~~~Sa~~~~  169 (218)
T 1nrj_B          151 KVIERRKKS-LNEVERKINE  169 (218)
T ss_dssp             HHHHHHHHH-HHC-------
T ss_pred             HHHHHHhcc-cccccccccc
Confidence            444444433 5666666554

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.91  E-value=1.6e-24  Score=174.32  Aligned_cols=162  Identities=15%  Similarity=0.190  Sum_probs=116.3

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCC--CCCCcCccccccceeEEECCEEEEEEEEEcCCC----------ccccccc
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTENKF--PTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ----------EDYERLR   88 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~----------~~~~~~~   88 (205)
                      ...+||+++|.+|+|||||++++.+...  ...+..++.+.....+..++.  .+.||||||+          +.|...+
T Consensus       173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~  250 (436)
T 2hjg_A          173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR  250 (436)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTE--EEEETTHHHHTCBTTBCCCCSHHHHHH
T ss_pred             ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCe--EEEEEECCCcCcCccccchHHHHHHHH
Confidence            3568999999999999999999998875  344455555555566777775  4899999997          4444333


Q ss_pred             c-cCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHH-HHHH
Q psy15714         89 P-MSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQG-KKMR  166 (205)
Q Consensus        89 ~-~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~~  166 (205)
                      . .+++.+|++++|+|++++.+.++.  .|+..+...  +.|+++|+||+|+...+            ....++. ..+.
T Consensus       251 ~~~~~~~ad~~llv~D~~~~~s~~~~--~~~~~~~~~--~~~iiiv~NK~Dl~~~~------------~~~~~~~~~~~~  314 (436)
T 2hjg_A          251 ALKAIDRSEVVAVVLDGEEGIIEQDK--RIAGYAHEA--GKAVVIVVNKWDAVDKD------------ESTMKEFEENIR  314 (436)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHHHH--HHHHHHHHT--TCEEEEEEECGGGSCCC------------TTHHHHHHHHHH
T ss_pred             HHHHHHhCCEEEEEEcCCcCCcHHHH--HHHHHHHHc--CCcEEEEEECccCCCcc------------hHHHHHHHHHHH
Confidence            2 367889999999999999888876  577777654  89999999999997654            2222222 2222


Q ss_pred             HH---cCCceEEEcccCCCCCHHHHHHHHHHHHHhhc
Q psy15714        167 RK---IKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQ  200 (205)
Q Consensus       167 ~~---~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~  200 (205)
                      +.   ....+++++||++|.|++++|+.+.+.+....
T Consensus       315 ~~l~~~~~~~~~~~SA~tg~~v~~l~~~i~~~~~~~~  351 (436)
T 2hjg_A          315 DHFQFLDYAPILFMSALTKKRIHTLMPAIIKASENHS  351 (436)
T ss_dssp             HHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHHHT
T ss_pred             HhcccCCCCCEEEEecccCCCHHHHHHHHHHHHHHhh
Confidence            22   23345999999999999999999998876543

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.90  E-value=1.7e-24  Score=172.37  Aligned_cols=158  Identities=20%  Similarity=0.216  Sum_probs=113.6

Q ss_pred             ccceeeEEEEECCCCCCHHHHHHHHhcCCCC--CCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccc-------
Q psy15714         19 SVHKALKVTTVGDGMVGKTCLLITHTENKFP--TDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRP-------   89 (205)
Q Consensus        19 ~~~~~~ki~v~G~~~~GKstli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~-------   89 (205)
                      .....++|+|+|..++|||||++++.+..+.  ..+..++.......+...+.. .+.+|||||++.+..+..       
T Consensus        30 ~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~-~l~liDTpG~~d~~~l~~~~~~~~~  108 (423)
T 3qq5_A           30 DAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIG-PVTLVDTPGLDDVGELGRLRVEKAR  108 (423)
T ss_dssp             --CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTE-EEEEEECSSTTCCCTTCCCCHHHHH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCC-eEEEEECcCCCcccchhHHHHHHHH
Confidence            4556789999999999999999999988763  233333333334555555542 799999999988765533       


Q ss_pred             cCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHc
Q psy15714         90 MSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKI  169 (205)
Q Consensus        90 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (205)
                      .++..+|++++|+|++.. .   ....|+..+...  ++|+++|+||+|+....            ..  +..+.+++.+
T Consensus       109 ~~l~~aD~vllVvD~~~~-~---~~~~~l~~l~~~--~~piIvV~NK~Dl~~~~------------~~--~~~~~l~~~~  168 (423)
T 3qq5_A          109 RVFYRADCGILVTDSAPT-P---YEDDVVNLFKEM--EIPFVVVVNKIDVLGEK------------AE--ELKGLYESRY  168 (423)
T ss_dssp             HHHTSCSEEEEECSSSCC-H---HHHHHHHHHHHT--TCCEEEECCCCTTTTCC------------CT--HHHHHSSCCT
T ss_pred             HHHhcCCEEEEEEeCCCh-H---HHHHHHHHHHhc--CCCEEEEEeCcCCCCcc------------HH--HHHHHHHHHc
Confidence            368889999999998332 2   223677778777  89999999999998754            21  5556666666


Q ss_pred             CCceEEEcccCCCCCHHHHHHHHHHHHHh
Q psy15714        170 KAAEYLECSAKLNEGLDQVFIAAVRSAVK  198 (205)
Q Consensus       170 ~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  198 (205)
                      +.. ++++||++|.|++++|++|.+.+..
T Consensus       169 g~~-v~~vSAktg~gI~eL~~~L~~~l~~  196 (423)
T 3qq5_A          169 EAK-VLLVSALQKKGFDDIGKTISEILPG  196 (423)
T ss_dssp             TCC-CCCCSSCCTTSTTTHHHHHHHHSCC
T ss_pred             CCC-EEEEECCCCCCHHHHHHHHHHhhhh
Confidence            765 9999999999999999999988743

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.90  E-value=4.9e-23  Score=165.82  Aligned_cols=154  Identities=23%  Similarity=0.189  Sum_probs=105.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCC--CCCCcCccccccceeEEECCEEEEEEEEEcCCCcc---------cccccccCc
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTENKF--PTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQED---------YERLRPMSY   92 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~---------~~~~~~~~~   92 (205)
                      .+|+++|.+++|||||+|+|.+.+.  ...+..++.+.....+..++.  .+.+|||||.+.         ++.....++
T Consensus         2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~   79 (439)
T 1mky_A            2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGK--TFKLVDTCGVFDNPQDIISQKMKEVTLNMI   79 (439)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTE--EEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCe--EEEEEECCCccccccchHHHHHHHHHHHHH
Confidence            3799999999999999999998764  344444444454556677775  578999999764         233445678


Q ss_pred             CCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHH-HHHHHHcCC
Q psy15714         93 PNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQG-KKMRRKIKA  171 (205)
Q Consensus        93 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  171 (205)
                      +.+|++++|+|+.+..+..+.  .+...++..  ++|+++|+||+|+....               ..+. .++. .++.
T Consensus        80 ~~ad~il~V~D~~~~~~~~d~--~i~~~l~~~--~~p~ilv~NK~D~~~~~---------------~~~~~~~~~-~lg~  139 (439)
T 1mky_A           80 READLVLFVVDGKRGITKEDE--SLADFLRKS--TVDTILVANKAENLREF---------------EREVKPELY-SLGF  139 (439)
T ss_dssp             TTCSEEEEEEETTTCCCHHHH--HHHHHHHHH--TCCEEEEEESCCSHHHH---------------HHHTHHHHG-GGSS
T ss_pred             HhCCEEEEEEECCCCCCHHHH--HHHHHHHHc--CCCEEEEEeCCCCcccc---------------HHHHHHHHH-hcCC
Confidence            999999999999887655442  233344444  89999999999975320               1112 2333 4566


Q ss_pred             ceEEEcccCCCCCHHHHHHHHHHHHHhh
Q psy15714        172 AEYLECSAKLNEGLDQVFIAAVRSAVKK  199 (205)
Q Consensus       172 ~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  199 (205)
                      .+++++||++|.|++++|+++.+.+...
T Consensus       140 ~~~~~iSA~~g~gv~~L~~~i~~~l~~~  167 (439)
T 1mky_A          140 GEPIPVSAEHNINLDTMLETIIKKLEEK  167 (439)
T ss_dssp             CSCEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred             CCEEEEeccCCCCHHHHHHHHHHhcccc
Confidence            4489999999999999999999988643

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.90  E-value=1.4e-22  Score=159.15  Aligned_cols=161  Identities=18%  Similarity=0.147  Sum_probs=115.7

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCC-CCcCccccccceeEEECCEEEEEEEEEcCCCccccc---------cccc
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTENKFPT-DYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYER---------LRPM   90 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---------~~~~   90 (205)
                      ...++|+++|.+|+|||||++++.+..+.. .+..++.......+..++  ..+.+||+||......         ....
T Consensus       165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~  242 (357)
T 2e87_A          165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGY--FRYQIIDTPGLLDRPISERNEIEKQAILA  242 (357)
T ss_dssp             SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETT--EEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecC--ceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence            456899999999999999999999876422 111221111112223333  5699999999754321         1113


Q ss_pred             CcCCCcEEEEEEECCCcc--hHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHH
Q psy15714         91 SYPNTDCFLLCFSIGSTS--SYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRK  168 (205)
Q Consensus        91 ~~~~~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (205)
                      +...+|++++|+|+++..  ++.... .|+..+.....+.|+++|+||+|+....            .  .+++..+++.
T Consensus       243 ~~~~ad~illV~D~s~~~~~~~~~~~-~~~~~i~~~~~~~piilV~NK~Dl~~~~------------~--~~~~~~~~~~  307 (357)
T 2e87_A          243 LRYLGNLIIYIFDPSEHCGFPLEEQI-HLFEEVHGEFKDLPFLVVINKIDVADEE------------N--IKRLEKFVKE  307 (357)
T ss_dssp             GGGTCSEEEEEECTTCTTSSCHHHHH-HHHHHHHHHTTTSCEEEEECCTTTCCHH------------H--HHHHHHHHHH
T ss_pred             HHhcCCEEEEEEeCCccccCCHHHHH-HHHHHHHHhcCCCCEEEEEECcccCChH------------H--HHHHHHHHHh
Confidence            445799999999999876  677765 7888887765589999999999987643            1  2345556666


Q ss_pred             cCCceEEEcccCCCCCHHHHHHHHHHHHHhh
Q psy15714        169 IKAAEYLECSAKLNEGLDQVFIAAVRSAVKK  199 (205)
Q Consensus       169 ~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  199 (205)
                      .+.. ++++||++|+|++++|+++.+.+...
T Consensus       308 ~~~~-~~~iSA~~g~gi~~l~~~i~~~l~~~  337 (357)
T 2e87_A          308 KGLN-PIKISALKGTGIDLVKEEIIKTLRPL  337 (357)
T ss_dssp             TTCC-CEECBTTTTBTHHHHHHHHHHHHHHH
T ss_pred             cCCC-eEEEeCCCCcCHHHHHHHHHHHHHHH
Confidence            6665 99999999999999999999887654

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.90  E-value=2.2e-23  Score=168.69  Aligned_cols=151  Identities=22%  Similarity=0.235  Sum_probs=114.1

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCC--CCCCCcCccccccceeEEECCEEEEEEEEEcCCCc-ccccc--------cccC
Q psy15714         23 ALKVTTVGDGMVGKTCLLITHTENK--FPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQE-DYERL--------RPMS   91 (205)
Q Consensus        23 ~~ki~v~G~~~~GKstli~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~-~~~~~--------~~~~   91 (205)
                      .++|+++|.+|+|||||++++.+..  +...+..|+.+.....+.+++  ..+.+|||||.. .+...        ...+
T Consensus       243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~  320 (482)
T 1xzp_A          243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQE  320 (482)
T ss_dssp             CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred             CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence            4899999999999999999999875  345556666666667777887  468999999987 55432        2245


Q ss_pred             cCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCC
Q psy15714         92 YPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKA  171 (205)
Q Consensus        92 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (205)
                      ++.+|++++|+|++++.++++.  .++..+    .+.|+++|+||+|+...              +..++...+.. .+.
T Consensus       321 ~~~aD~vl~VvD~s~~~s~~~~--~il~~l----~~~piivV~NK~DL~~~--------------~~~~~~~~~~~-~~~  379 (482)
T 1xzp_A          321 IEKADIVLFVLDASSPLDEEDR--KILERI----KNKRYLVVINKVDVVEK--------------INEEEIKNKLG-TDR  379 (482)
T ss_dssp             HHHCSEEEEEEETTSCCCHHHH--HHHHHH----TTSSEEEEEEECSSCCC--------------CCHHHHHHHHT-CST
T ss_pred             hhcccEEEEEecCCCCCCHHHH--HHHHHh----cCCCEEEEEECcccccc--------------cCHHHHHHHhc-CCC
Confidence            7889999999999998887664  333333    37899999999999652              22233433332 223


Q ss_pred             ceEEEcccCCCCCHHHHHHHHHHHHH
Q psy15714        172 AEYLECSAKLNEGLDQVFIAAVRSAV  197 (205)
Q Consensus       172 ~~~~~~Sa~~~~~i~~~~~~i~~~~~  197 (205)
                      . ++++||++|+|++++|++|.+.+.
T Consensus       380 ~-~i~iSAktg~Gi~eL~~~l~~~~~  404 (482)
T 1xzp_A          380 H-MVKISALKGEGLEKLEESIYRETQ  404 (482)
T ss_dssp             T-EEEEEGGGTCCHHHHHHHHHHHTH
T ss_pred             c-EEEEECCCCCCHHHHHHHHHHHHh
Confidence            4 999999999999999999998765

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=99.89  E-value=7.3e-23  Score=159.66  Aligned_cols=134  Identities=10%  Similarity=0.087  Sum_probs=96.7

Q ss_pred             EEEEEEEEEcCCCcccccccccCcCCCcEEEEEEECC----------CcchHHHHHHHHHHHHhhh--CCCCCEEEEeeC
Q psy15714         69 KTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIG----------STSSYENILSKWYPELKHH--CPKVPIILVGTK  136 (205)
Q Consensus        69 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK  136 (205)
                      ..+.+++||++|++.++.++..++++++++|||||++          +..++++.. .|+..+...  ..++|+++|+||
T Consensus       181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~-~~~~~i~~~~~~~~~piiLvgNK  259 (354)
T 2xtz_A          181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETK-ELFDWVLKQPCFEKTSFMLFLNK  259 (354)
T ss_dssp             ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHH-HHHHHHHTCGGGSSCEEEEEEEC
T ss_pred             cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHH-HHHHHHHhccccCCCeEEEEEEC
Confidence            5689999999999999999999999999999999998          788999987 566655442  368999999999


Q ss_pred             cccccCchhh-hhhh---hhcc-----ccccHHHHHHHHHH---------------cCCceEEEcccCCCCCHHHHHHHH
Q psy15714        137 ADLRSENKTI-DKKK---AAEV-----DLVSTSQGKKMRRK---------------IKAAEYLECSAKLNEGLDQVFIAA  192 (205)
Q Consensus       137 ~Dl~~~~~~~-~~~~---~~~~-----~~~~~~~~~~~~~~---------------~~~~~~~~~Sa~~~~~i~~~~~~i  192 (205)
                      +|+....... ....   ....     ...+.+++..++..               .....+++|||+++.||+++|.++
T Consensus       260 ~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v  339 (354)
T 2xtz_A          260 FDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLV  339 (354)
T ss_dssp             HHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHH
T ss_pred             cchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHH
Confidence            9986532110 0000   0000     01235666666433               123336899999999999999999


Q ss_pred             HHHHHhhcccC
Q psy15714        193 VRSAVKKQDKS  203 (205)
Q Consensus       193 ~~~~~~~~~~~  203 (205)
                      .+.+....-+.
T Consensus       340 ~~~I~~~~l~~  350 (354)
T 2xtz_A          340 DETLRRRNLLE  350 (354)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHh
Confidence            99988765543

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.89  E-value=1.3e-22  Score=158.33  Aligned_cols=133  Identities=15%  Similarity=0.180  Sum_probs=98.8

Q ss_pred             EEEEEEEEcCCCcccccccccCcCCCcEEEEEEECCC----------cchHHHHHHHHHHHHhhh--CCCCCEEEEeeCc
Q psy15714         70 TYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGS----------TSSYENILSKWYPELKHH--CPKVPIILVGTKA  137 (205)
Q Consensus        70 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~  137 (205)
                      .+.+.+||++|++.++..|..++++++++|||||+++          ..++.+.. .|+..+...  ..++|+++++||+
T Consensus       192 ~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~-~~~~~i~~~~~~~~~piiLv~NK~  270 (353)
T 1cip_A          192 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESM-KLFDSICNNKWFTDTSIILFLNKK  270 (353)
T ss_dssp             TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHH-HHHHHHHTCGGGTTSEEEEEEECH
T ss_pred             CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHH-HHHHHHHcCccccCCcEEEEEECc
Confidence            3779999999999999999999999999999999999          56788887 566655442  2689999999999


Q ss_pred             ccccCchhh-hhhhh-hc-cccccHHHHHHHHHH----------cCCceEEEcccCCCCCHHHHHHHHHHHHHhhcccC
Q psy15714        138 DLRSENKTI-DKKKA-AE-VDLVSTSQGKKMRRK----------IKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQDKS  203 (205)
Q Consensus       138 Dl~~~~~~~-~~~~~-~~-~~~~~~~~~~~~~~~----------~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~~~  203 (205)
                      |+....... ..... .. ...++.+++..++..          ....++++|||+++.||+++|.++.+.+....-+.
T Consensus       271 DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~~~l~~  349 (353)
T 1cip_A          271 DLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKD  349 (353)
T ss_dssp             HHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHHC---
T ss_pred             CchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHHHHHHH
Confidence            986432110 00000 00 013567888888763          23345899999999999999999999998765543

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.89  E-value=2e-22  Score=163.61  Aligned_cols=162  Identities=21%  Similarity=0.191  Sum_probs=112.6

Q ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCC----C---CCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccC
Q psy15714         20 VHKALKVTTVGDGMVGKTCLLITHTENK----F---PTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMS   91 (205)
Q Consensus        20 ~~~~~ki~v~G~~~~GKstli~~~~~~~----~---~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~   91 (205)
                      .++.++|+++|..++|||||++++.+..    +   .....+.+.... ...+..++  ..+.+||+||++.|.......
T Consensus        16 ~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~~   93 (482)
T 1wb1_A           16 DFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSA   93 (482)
T ss_dssp             CCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHHH
Confidence            3678999999999999999999999776    1   111111111111 12344455  679999999999998888888


Q ss_pred             cCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHc-C
Q psy15714         92 YPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKI-K  170 (205)
Q Consensus        92 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  170 (205)
                      +..+|++++|+|+++...-+..  +++..+...  ++|+++|+||+|+.+....          ....++...+.+.. +
T Consensus        94 ~~~aD~~ilVvda~~g~~~qt~--e~l~~~~~~--~ip~IvviNK~Dl~~~~~~----------~~~~~~l~~~l~~~~~  159 (482)
T 1wb1_A           94 ADIIDLALIVVDAKEGPKTQTG--EHMLILDHF--NIPIIVVITKSDNAGTEEI----------KRTEMIMKSILQSTHN  159 (482)
T ss_dssp             TTSCCEEEEEEETTTCSCHHHH--HHHHHHHHT--TCCBCEEEECTTSSCHHHH----------HHHHHHHHHHHHHSSS
T ss_pred             HhhCCEEEEEEecCCCccHHHH--HHHHHHHHc--CCCEEEEEECCCcccchhH----------HHHHHHHHHHHhhhcc
Confidence            9999999999999884322222  233344444  7999999999999753211          22234555555544 2


Q ss_pred             --CceEEEcccCCCCCHHHHHHHHHHHHH
Q psy15714        171 --AAEYLECSAKLNEGLDQVFIAAVRSAV  197 (205)
Q Consensus       171 --~~~~~~~Sa~~~~~i~~~~~~i~~~~~  197 (205)
                        ..+++++||++|+|+++++++|.+.+.
T Consensus       160 ~~~~~ii~vSA~~g~gI~~L~~~L~~~i~  188 (482)
T 1wb1_A          160 LKNSSIIPISAKTGFGVDELKNLIITTLN  188 (482)
T ss_dssp             GGGCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             cccceEEEEECcCCCCHHHHHHHHHHhhc
Confidence              234999999999999999999998774

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.89  E-value=1.8e-22  Score=160.85  Aligned_cols=167  Identities=16%  Similarity=0.097  Sum_probs=114.6

Q ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCC--cC-cccc----ccceeEE------------ECCEEEEEEEEEcCC
Q psy15714         20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDY--VP-TVFD----NYPDTIT------------VDNKTYDVTLWDTAG   80 (205)
Q Consensus        20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~--~~-t~~~----~~~~~~~------------~~~~~~~~~i~D~~g   80 (205)
                      ....++|+++|.+++|||||++++.+.......  .. +.+.    .....+.            .......+.+||+||
T Consensus         5 ~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPG   84 (403)
T 3sjy_A            5 VQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPG   84 (403)
T ss_dssp             CCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCC
T ss_pred             cCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCC
Confidence            456799999999999999999999975432210  00 0000    0000000            012336899999999


Q ss_pred             CcccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHH
Q psy15714         81 QEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTS  160 (205)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~  160 (205)
                      ++.|.......+..+|++++|+|+++..+..... +|+..+.... ..|+++|+||+|+.+....          ....+
T Consensus        85 h~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~-~~~~~~~~~~-~~~iivviNK~Dl~~~~~~----------~~~~~  152 (403)
T 3sjy_A           85 HEVLMATMLSGAALMDGAILVVAANEPFPQPQTR-EHFVALGIIG-VKNLIIVQNKVDVVSKEEA----------LSQYR  152 (403)
T ss_dssp             CGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHH-HHHHHHHHHT-CCCEEEEEECGGGSCHHHH----------HHHHH
T ss_pred             cHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHH-HHHHHHHHcC-CCCEEEEEECccccchHHH----------HHHHH
Confidence            9999998888899999999999999886555555 5666665552 3589999999999764321          11122


Q ss_pred             HHHHHHHHcC--CceEEEcccCCCCCHHHHHHHHHHHHHh
Q psy15714        161 QGKKMRRKIK--AAEYLECSAKLNEGLDQVFIAAVRSAVK  198 (205)
Q Consensus       161 ~~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  198 (205)
                      +...+.+..+  ..+++++||++|+|++++|++|.+.+..
T Consensus       153 ~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~  192 (403)
T 3sjy_A          153 QIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKT  192 (403)
T ss_dssp             HHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred             HHHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCCC
Confidence            3333333322  3359999999999999999999886643

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.88  E-value=4.9e-24  Score=173.87  Aligned_cols=159  Identities=18%  Similarity=0.181  Sum_probs=113.8

Q ss_pred             eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEE-CCEEEEEEEEEcCCCcccccccccCcCCCcEEE
Q psy15714         22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITV-DNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFL   99 (205)
Q Consensus        22 ~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   99 (205)
                      +..+|+++|++++|||||+++|.+..+.....+++.... ...+.. ++  ..+++|||||++.|...+..++..+|+++
T Consensus         3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g--~~i~~iDTPGhe~f~~~~~~~~~~aD~vI   80 (537)
T 3izy_P            3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSG--EKITFLDTPGHAAFSAMRARGTQVTDIVI   80 (537)
T ss_dssp             CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCS--SCCBCEECSSSCCTTTSBBSSSBSBSSCE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCC--CEEEEEECCChHHHHHHHHHHHccCCEEE
Confidence            567899999999999999999997765443344333322 222222 23  36899999999999999999999999999


Q ss_pred             EEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHH---HHHc-CCceEE
Q psy15714        100 LCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKM---RRKI-KAAEYL  175 (205)
Q Consensus       100 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~  175 (205)
                      +|+|+++....+..  +++..+...  ++|+++++||+|+...+..          .+ .++...+   +..+ +..+++
T Consensus        81 LVVDa~dg~~~qt~--e~l~~~~~~--~vPiIVViNKiDl~~~~~~----------~v-~~~l~~~~~~~e~~~~~~~iv  145 (537)
T 3izy_P           81 LVVAADDGVMKQTV--ESIQHAKDA--HVPIVLAINKCDKAEADPE----------KV-KKELLAYDVVCEDYGGDVQAV  145 (537)
T ss_dssp             EECBSSSCCCHHHH--HHHHHHHTT--TCCEEECCBSGGGTTTSCC----------SS-SSHHHHTTSCCCCSSSSEEEC
T ss_pred             EEEECCCCccHHHH--HHHHHHHHc--CCcEEEEEecccccccchH----------HH-HHHHHhhhhhHHhcCCCceEE
Confidence            99999997766554  344444444  8999999999999754321          11 1111111   1111 124599


Q ss_pred             EcccCCCCCHHHHHHHHHHHHH
Q psy15714        176 ECSAKLNEGLDQVFIAAVRSAV  197 (205)
Q Consensus       176 ~~Sa~~~~~i~~~~~~i~~~~~  197 (205)
                      ++||++|+|++++|+++...+.
T Consensus       146 ~vSAktG~GI~eLle~I~~l~~  167 (537)
T 3izy_P          146 HVSALTGENMMALAEATIALAE  167 (537)
T ss_dssp             CCCSSSSCSSHHHHHHHHHHHT
T ss_pred             EEECCCCCCchhHHHHHHHhhh
Confidence            9999999999999999988764

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.88  E-value=2.1e-22  Score=155.05  Aligned_cols=131  Identities=15%  Similarity=0.107  Sum_probs=97.3

Q ss_pred             EEEEEEEcCCCcccccccccCcCCCcEEEEEEECC----------CcchHHHHHHHHHHHHhh-hC-CCCCEEEEeeCcc
Q psy15714         71 YDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIG----------STSSYENILSKWYPELKH-HC-PKVPIILVGTKAD  138 (205)
Q Consensus        71 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~-~~-~~~p~ivv~nK~D  138 (205)
                      +++++||++|++.++..|..++++++++|||||++          +..++.+.. .|+..+.. .. .++|+++++||+|
T Consensus       167 v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~-~~~~~i~~~~~~~~~~iiL~~NK~D  245 (327)
T 3ohm_A          167 VIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESK-ALFRTIITYPWFQNSSVILFLNKKD  245 (327)
T ss_dssp             EEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHH-HHHHHHHTSGGGTTCEEEEEEECHH
T ss_pred             eeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHH-HHHHHHhhhhccCCceEEEEEECch
Confidence            78999999999999999999999999999999654          667888877 45444433 22 6899999999999


Q ss_pred             cccCchh----hhhhhhhccccccHHHHHHHHH----------HcCCceEEEcccCCCCCHHHHHHHHHHHHHhhcccC
Q psy15714        139 LRSENKT----IDKKKAAEVDLVSTSQGKKMRR----------KIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQDKS  203 (205)
Q Consensus       139 l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~~~  203 (205)
                      +...+..    ..-.........+.+++..+..          ..++ .+++|||+++.||+.+|..+.+.+++..-+.
T Consensus       246 L~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i-~~~~TsA~d~~nV~~vF~~v~~~Il~~~l~~  323 (327)
T 3ohm_A          246 LLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKII-YSHFTCATDTENIRFVFAAVKDTILQLNLKE  323 (327)
T ss_dssp             HHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCE-EEEECCTTCHHHHHHHHHHHHHHHHHTTCC-
T ss_pred             hhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCc-EEEEEEeecCHHHHHHHHHHHHHHHHHhHHh
Confidence            8754311    1111111122457778877742          3333 4889999999999999999999998876544

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.88  E-value=3.4e-22  Score=153.44  Aligned_cols=157  Identities=17%  Similarity=0.126  Sum_probs=109.2

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCC--CCCcCccccccceeEEECCEEEEEEEEEcCCCc-c--------cccccc
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTENKFP--TDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQE-D--------YERLRP   89 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~-~--------~~~~~~   89 (205)
                      .+..+|+++|++|+|||||++++.+.++.  .....++.......+..++  .++.+|||||.. .        +.....
T Consensus         6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~--~~i~~iDTpG~~~~~~~~l~~~~~~~~~   83 (301)
T 1ega_A            6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLHMEEKRAINRLMNKAAS   83 (301)
T ss_dssp             CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCCHHHHHHHHHHHTCCTT
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECC--eeEEEEECcCCCccchhhHHHHHHHHHH
Confidence            45568999999999999999999988753  2222222221112233333  578999999987 2        334456


Q ss_pred             cCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHc
Q psy15714         90 MSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKI  169 (205)
Q Consensus        90 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (205)
                      ..++.+|++++|+|+++ -+  .....+...+..  .+.|+++++||+|+....            ....+....+.+.+
T Consensus        84 ~~l~~~D~vl~Vvd~~~-~~--~~~~~i~~~l~~--~~~P~ilvlNK~D~~~~~------------~~~~~~l~~l~~~~  146 (301)
T 1ega_A           84 SSIGDVELVIFVVEGTR-WT--PDDEMVLNKLRE--GKAPVILAVNKVDNVQEK------------ADLLPHLQFLASQM  146 (301)
T ss_dssp             SCCCCEEEEEEEEETTC-CC--HHHHHHHHHHHS--SSSCEEEEEESTTTCCCH------------HHHHHHHHHHHTTS
T ss_pred             HHHhcCCEEEEEEeCCC-CC--HHHHHHHHHHHh--cCCCEEEEEECcccCccH------------HHHHHHHHHHHHhc
Confidence            67899999999999977 33  222123333433  379999999999987622            22234455666666


Q ss_pred             CCceEEEcccCCCCCHHHHHHHHHHHH
Q psy15714        170 KAAEYLECSAKLNEGLDQVFIAAVRSA  196 (205)
Q Consensus       170 ~~~~~~~~Sa~~~~~i~~~~~~i~~~~  196 (205)
                      +...++++||+++.|++++++.+.+.+
T Consensus       147 ~~~~~i~iSA~~g~~v~~l~~~i~~~l  173 (301)
T 1ega_A          147 NFLDIVPISAETGLNVDTIAAIVRKHL  173 (301)
T ss_dssp             CCSEEEECCTTTTTTHHHHHHHHHTTC
T ss_pred             CcCceEEEECCCCCCHHHHHHHHHHhC
Confidence            765689999999999999999988654

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.88  E-value=2e-22  Score=151.83  Aligned_cols=170  Identities=14%  Similarity=0.104  Sum_probs=108.0

Q ss_pred             ccceeeEEEEECCCCCCHHHHHHHHhcCC-CCCCCcCc--cccccceeEEECCEEEEEEEEEcCCCccccccc-------
Q psy15714         19 SVHKALKVTTVGDGMVGKTCLLITHTENK-FPTDYVPT--VFDNYPDTITVDNKTYDVTLWDTAGQEDYERLR-------   88 (205)
Q Consensus        19 ~~~~~~ki~v~G~~~~GKstli~~~~~~~-~~~~~~~t--~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~-------   88 (205)
                      .....++|+|+|.+|+|||||++++.+.. +...+.++  +.......+..++  ..+.||||||...+....       
T Consensus        18 ~~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i   95 (260)
T 2xtp_A           18 ASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEV   95 (260)
T ss_dssp             ---CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHH
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHH
Confidence            34567999999999999999999999877 44333333  2222233445556  569999999986653221       


Q ss_pred             ----ccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhC---CCCCEEEEee-CcccccCchhhhhhhhhccccccHH
Q psy15714         89 ----PMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC---PKVPIILVGT-KADLRSENKTIDKKKAAEVDLVSTS  160 (205)
Q Consensus        89 ----~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~n-K~Dl~~~~~~~~~~~~~~~~~~~~~  160 (205)
                          ...++.+|++|+|+|+++......   .+...+....   ...|.++|+| |+|+..........      .....
T Consensus        96 ~~~~~~~~~~~d~il~V~d~~~~~~~~~---~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~~~~~i~------~~~~~  166 (260)
T 2xtp_A           96 QRCYLLSAPGPHVLLLVTQLGRYTSQDQ---QAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGSLMDYMH------DSDNK  166 (260)
T ss_dssp             HHHHHHHTTCCSEEEEEEETTCCCHHHH---HHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHH------HCCCH
T ss_pred             HHHHHhcCCCCcEEEEEEeCCCCCHHHH---HHHHHHHHHhCchhhccEEEEEEcccccCCccHHHHHH------hcchH
Confidence                125789999999999986332222   2333333322   1456766666 99997532110000      11124


Q ss_pred             HHHHHHHHcCCce--E--EEcccCCCCCHHHHHHHHHHHHHhh
Q psy15714        161 QGKKMRRKIKAAE--Y--LECSAKLNEGLDQVFIAAVRSAVKK  199 (205)
Q Consensus       161 ~~~~~~~~~~~~~--~--~~~Sa~~~~~i~~~~~~i~~~~~~~  199 (205)
                      +++.+.+..+...  +  +++||+++.|++++|++|.+.+...
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~  209 (260)
T 2xtp_A          167 ALSKLVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEK  209 (260)
T ss_dssp             HHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHhC
Confidence            4555666665431  2  7899999999999999999987654

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.88  E-value=6.2e-23  Score=159.54  Aligned_cols=159  Identities=20%  Similarity=0.234  Sum_probs=115.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCC-CCCcCccccccceeEEECCEEEEEEEEEcCCCcc----cccccccCcC---CCc
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENKFP-TDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQED----YERLRPMSYP---NTD   96 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~~~~---~~~   96 (205)
                      +|+++|.++||||||++++.+.+.. ..+..++.......+.+++. ..+.+||+||...    ++.+...+++   .++
T Consensus       160 ~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~-~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d  238 (342)
T 1lnz_A          160 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG-RSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR  238 (342)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSS-CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred             eeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCC-ceEEEecCCCCcccccccchhHHHHHHHHHhcc
Confidence            5889999999999999999987642 22332332222223444431 4689999999543    3334344444   499


Q ss_pred             EEEEEEECCC---cchHHHHHHHHHHHHhhhC---CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcC
Q psy15714         97 CFLLCFSIGS---TSSYENILSKWYPELKHHC---PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIK  170 (205)
Q Consensus        97 ~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (205)
                      ++|+|+|+++   +.+++++. .|+..+..+.   .++|+++|+||+|+....                +....+++.+.
T Consensus       239 ~ll~VvD~s~~~~~~~~~~~~-~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~----------------e~~~~l~~~l~  301 (342)
T 1lnz_A          239 VIVHVIDMSGLEGRDPYDDYL-TINQELSEYNLRLTERPQIIVANKMDMPEAA----------------ENLEAFKEKLT  301 (342)
T ss_dssp             EEEEEEESSCSSCCCHHHHHH-HHHHHHHHSCSSTTTSCBCBEEECTTSTTHH----------------HHHHHHHHHCC
T ss_pred             EEEEEEECCcccccChHHHHH-HHHHHHHHhhhhhcCCCEEEEEECccCCCCH----------------HHHHHHHHHhh
Confidence            9999999998   78888876 7888888765   489999999999986532                23455555555


Q ss_pred             C-ceEEEcccCCCCCHHHHHHHHHHHHHhhcc
Q psy15714        171 A-AEYLECSAKLNEGLDQVFIAAVRSAVKKQD  201 (205)
Q Consensus       171 ~-~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~  201 (205)
                      . .+++++||++++|++++|.+|.+.+....+
T Consensus       302 ~~~~v~~iSA~tg~gi~eL~~~l~~~l~~~~~  333 (342)
T 1lnz_A          302 DDYPVFPISAVTREGLRELLFEVANQLENTPE  333 (342)
T ss_dssp             SCCCBCCCSSCCSSTTHHHHHHHHHHHTSCCC
T ss_pred             cCCCEEEEECCCCcCHHHHHHHHHHHHhhCcc
Confidence            2 348999999999999999999998865443

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.88  E-value=1.8e-22  Score=162.65  Aligned_cols=154  Identities=23%  Similarity=0.259  Sum_probs=105.9

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCC--CCCCcCccccccceeEEECCEEEEEEEEEcCCCccccccc--------cc
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTENKF--PTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLR--------PM   90 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~--------~~   90 (205)
                      ...++|+++|.+|+|||||+++|.+..+  ......++.+.....+.+++  ..+.+|||||...+....        ..
T Consensus       222 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~  299 (462)
T 3geh_A          222 RTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQ  299 (462)
T ss_dssp             HHCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------C
T ss_pred             cCCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhh
Confidence            3568999999999999999999998643  34444444444456777888  468999999976654332        23


Q ss_pred             CcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcC
Q psy15714         91 SYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIK  170 (205)
Q Consensus        91 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (205)
                      .+..+|++++|+|++++.+....  .|+..+.    +.|+++|+||+|+.......              ....+.   .
T Consensus       300 ~~~~aD~vl~VvD~s~~~~~~~~--~i~~~l~----~~piivV~NK~Dl~~~~~~~--------------~~~~~~---~  356 (462)
T 3geh_A          300 AANTADLVLLTIDAATGWTTGDQ--EIYEQVK----HRPLILVMNKIDLVEKQLIT--------------SLEYPE---N  356 (462)
T ss_dssp             CCCSCSEEEEEEETTTCSCHHHH--HHHHHHT----TSCEEEEEECTTSSCGGGST--------------TCCCCT---T
T ss_pred             hhhcCCEEEEEeccCCCCCHHHH--HHHHhcc----CCcEEEEEECCCCCcchhhH--------------HHHHhc---c
Confidence            67889999999999998776552  5665553    47999999999997654211              000011   2


Q ss_pred             CceEEEcccCCCCCHHHHHHHHHHHHHhh
Q psy15714        171 AAEYLECSAKLNEGLDQVFIAAVRSAVKK  199 (205)
Q Consensus       171 ~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  199 (205)
                      ..+++++||++|+|++++|++|.+.+...
T Consensus       357 ~~~~i~iSAktg~Gi~eL~~~i~~~~~~~  385 (462)
T 3geh_A          357 ITQIVHTAAAQKQGIDSLETAILEIVQTG  385 (462)
T ss_dssp             CCCEEEEBTTTTBSHHHHHHHHHHHHTTS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence            33499999999999999999999987654

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.88  E-value=2e-21  Score=156.49  Aligned_cols=161  Identities=19%  Similarity=0.160  Sum_probs=108.6

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCC--CCCCcCccccccceeEEECCEEEEEEEEEcCCCccccccc----------
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTENKF--PTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLR----------   88 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~----------   88 (205)
                      ...+||+++|++|+|||||++++.+...  ...+..++.+.....+.+++.  .+.+||++|........          
T Consensus       178 ~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~  255 (439)
T 1mky_A          178 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNY  255 (439)
T ss_dssp             CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCH
T ss_pred             ccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHH
Confidence            3468999999999999999999998764  344444444444566778885  57899999975433221          


Q ss_pred             --ccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHH-HH
Q psy15714         89 --PMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGK-KM  165 (205)
Q Consensus        89 --~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~~  165 (205)
                        ...++.+|++++|+|+++..+..+.  .+...+...  +.|+++|+||+|+...+            ..+.++.. .+
T Consensus       256 ~~~~~i~~ad~vllv~d~~~~~~~~~~--~i~~~l~~~--~~~~ilv~NK~Dl~~~~------------~~~~~~~~~~~  319 (439)
T 1mky_A          256 RVVDSIEKADVVVIVLDATQGITRQDQ--RMAGLMERR--GRASVVVFNKWDLVVHR------------EKRYDEFTKLF  319 (439)
T ss_dssp             HHHHHHHHCSEEEEEEETTTCCCHHHH--HHHHHHHHT--TCEEEEEEECGGGSTTG------------GGCHHHHHHHH
T ss_pred             HHHHHHhhCCEEEEEEeCCCCCCHHHH--HHHHHHHHc--CCCEEEEEECccCCCch------------hhHHHHHHHHH
Confidence              1235668999999999987776653  344545444  89999999999997643            22222221 22


Q ss_pred             HHH---cCCceEEEcccCCCCCHHHHHHHHHHHHHhh
Q psy15714        166 RRK---IKAAEYLECSAKLNEGLDQVFIAAVRSAVKK  199 (205)
Q Consensus       166 ~~~---~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  199 (205)
                      .+.   ....+++++||++|.|++++|+.+.+.+...
T Consensus       320 ~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~  356 (439)
T 1mky_A          320 REKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYASY  356 (439)
T ss_dssp             HHHCGGGTTSCEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             HHHhccCCCCcEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence            222   2334599999999999999999998876553

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.88  E-value=2.2e-21  Score=144.34  Aligned_cols=168  Identities=15%  Similarity=0.106  Sum_probs=106.7

Q ss_pred             ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCc---cccccceeEEECCEEEEEEEEEcCCCc-----------cc
Q psy15714         19 SVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPT---VFDNYPDTITVDNKTYDVTLWDTAGQE-----------DY   84 (205)
Q Consensus        19 ~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t---~~~~~~~~~~~~~~~~~~~i~D~~g~~-----------~~   84 (205)
                      .....+||+++|.+|+|||||++++++..+.....+.   +.......+..++  ..+.||||||..           .+
T Consensus        25 ~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~  102 (239)
T 3lxx_A           25 PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--TELVVVDTPGIFDTEVPNAETSKEI  102 (239)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--EEEEEEECCSCC-----CHHHHHHH
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--ceEEEEECCCccCCCCCHHHHHHHH
Confidence            4457899999999999999999999998875444332   1222233455666  468999999943           34


Q ss_pred             ccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhC---CCCCEEEEeeCcccccCchhhhhhhhhccccccHHH
Q psy15714         85 ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC---PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQ  161 (205)
Q Consensus        85 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~  161 (205)
                      .......++.+|++++|+|+++......   .|+..+....   ...|+++|+||+|+..........      ....+.
T Consensus       103 ~~~~~~~~~~~~~~l~v~d~~~~~~~~~---~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i------~~~~~~  173 (239)
T 3lxx_A          103 IRCILLTSPGPHALLLVVPLGRYTEEEH---KATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYL------REAPED  173 (239)
T ss_dssp             HHHHHHTTTCCSEEEEEEETTCCSSHHH---HHHHHHHHHHHHHHGGGEEEEEECGGGC------------------CHH
T ss_pred             HHHHHhcCCCCcEEEEEeeCCCCCHHHH---HHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHH------HhchHH
Confidence            4444456788999999999876544221   3333333211   246999999999987653211100      011346


Q ss_pred             HHHHHHHcCCceEEEcccCCC-----CCHHHHHHHHHHHHHh
Q psy15714        162 GKKMRRKIKAAEYLECSAKLN-----EGLDQVFIAAVRSAVK  198 (205)
Q Consensus       162 ~~~~~~~~~~~~~~~~Sa~~~-----~~i~~~~~~i~~~~~~  198 (205)
                      .+.+.+..+.. ++.+++..+     .++.++|..+.+.+..
T Consensus       174 l~~l~~~~~~~-~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~  214 (239)
T 3lxx_A          174 IQDLMDIFGDR-YCALNNKATGAEQEAQRAQLLGLIQRVVRE  214 (239)
T ss_dssp             HHHHHHHHSSS-EEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCE-EEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence            77888888877 777766643     6899999988777654

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.88  E-value=2e-21  Score=155.08  Aligned_cols=165  Identities=18%  Similarity=0.109  Sum_probs=103.1

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCC---CCCCCcC--ccccccc-eeEEE-------------C--C----EEEEEEE
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTENK---FPTDYVP--TVFDNYP-DTITV-------------D--N----KTYDVTL   75 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~~---~~~~~~~--t~~~~~~-~~~~~-------------~--~----~~~~~~i   75 (205)
                      ...++|+++|+.++|||||++++.+..   +.....+  |+...+. ..+..             +  +    ....+.+
T Consensus         6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i   85 (408)
T 1s0u_A            6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF   85 (408)
T ss_dssp             CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence            456999999999999999999998543   2222222  2222221 11100             1  1    2378999


Q ss_pred             EEcCCCcccccccccCcCCCcEEEEEEECCCcc-hHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhcc
Q psy15714         76 WDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTS-SYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEV  154 (205)
Q Consensus        76 ~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~  154 (205)
                      ||+||++.|...+...+..+|++++|+|+++.. .-+..  +.+..+... ...|+++++||+|+......         
T Consensus        86 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~--e~l~~~~~l-~~~~iivv~NK~Dl~~~~~~---------  153 (408)
T 1s0u_A           86 VDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTK--EHLMALEIL-GIDKIIIVQNKIDLVDEKQA---------  153 (408)
T ss_dssp             EECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHH--HHHHHHHHT-TCCCEEEEEECTTSSCTTTT---------
T ss_pred             EECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhH--HHHHHHHHc-CCCeEEEEEEccCCCCHHHH---------
Confidence            999999999888777888999999999999643 11111  222233322 23589999999999765311         


Q ss_pred             ccccHHHHHHHHHHc--CCceEEEcccCCCCCHHHHHHHHHHHHHh
Q psy15714        155 DLVSTSQGKKMRRKI--KAAEYLECSAKLNEGLDQVFIAAVRSAVK  198 (205)
Q Consensus       155 ~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  198 (205)
                       ....++.+.+++..  ...+++++||++|+|+++++++|.+.+..
T Consensus       154 -~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~  198 (408)
T 1s0u_A          154 -EENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPT  198 (408)
T ss_dssp             -TTHHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCC
T ss_pred             -HHHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence             12344556666543  23459999999999999999999886543

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=99.87  E-value=1.3e-21  Score=154.24  Aligned_cols=130  Identities=16%  Similarity=0.164  Sum_probs=96.2

Q ss_pred             EEEEEEEcCCCcccccccccCcCCCcEEEEEEECCC----------cchHHHHHHHHHHHHhhh--CCCCCEEEEeeCcc
Q psy15714         71 YDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGS----------TSSYENILSKWYPELKHH--CPKVPIILVGTKAD  138 (205)
Q Consensus        71 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D  138 (205)
                      +.++|||++|++.++..|..++++++++|||||+++          ..++.++. .|+..+...  ..++|++||+||+|
T Consensus       217 v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~-~~~~~i~~~~~~~~~piiLvgNK~D  295 (402)
T 1azs_C          217 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEAL-NLFKSIWNNRWLRTISVILFLNKQD  295 (402)
T ss_dssp             EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHH-HHHHHHHTCTTCSSCCEEEEEECHH
T ss_pred             ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHH-HHHHHHHhcccCCCCeEEEEEEChh
Confidence            679999999999999999999999999999999999          88999987 677766553  37899999999999


Q ss_pred             cccCchh--h-hhhhhh-cc--------------ccccHHHHHHHH-----HHc-------CCceEEEcccCCCCCHHHH
Q psy15714        139 LRSENKT--I-DKKKAA-EV--------------DLVSTSQGKKMR-----RKI-------KAAEYLECSAKLNEGLDQV  188 (205)
Q Consensus       139 l~~~~~~--~-~~~~~~-~~--------------~~~~~~~~~~~~-----~~~-------~~~~~~~~Sa~~~~~i~~~  188 (205)
                      +......  . ...... ..              ...+.+++..++     +..       ....+++|||+++.||+++
T Consensus       296 L~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~v  375 (402)
T 1azs_C          296 LLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRV  375 (402)
T ss_dssp             HHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHHH
T ss_pred             hhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHHH
Confidence            9654321  0 110000 00              001245565553     221       2334789999999999999


Q ss_pred             HHHHHHHHHhhcc
Q psy15714        189 FIAAVRSAVKKQD  201 (205)
Q Consensus       189 ~~~i~~~~~~~~~  201 (205)
                      |.++.+.++...-
T Consensus       376 F~~v~~~I~~~~l  388 (402)
T 1azs_C          376 FNDCRDIIQRMHL  388 (402)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999998876543

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.86  E-value=1.8e-21  Score=150.39  Aligned_cols=129  Identities=17%  Similarity=0.191  Sum_probs=94.1

Q ss_pred             EEEEEEEEcCCCcccccccccCcCCCcEEEEEEECC----------CcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcc
Q psy15714         70 TYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIG----------STSSYENILSKWYPELKHHC-PKVPIILVGTKAD  138 (205)
Q Consensus        70 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D  138 (205)
                      .+++++||++|++.++..|..++++++++|||||++          +..++.+....|...+.... .++|+++++||+|
T Consensus       160 ~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~D  239 (340)
T 4fid_A          160 DIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKMD  239 (340)
T ss_dssp             SCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECHH
T ss_pred             eeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECch
Confidence            477999999999999999999999999999999998          77888888744444444333 6899999999999


Q ss_pred             cccCchhhhh-hhh-hc-cccccHHHHHHHHHH-c-------------------------CCceEEEcccCCCCCHHHHH
Q psy15714        139 LRSENKTIDK-KKA-AE-VDLVSTSQGKKMRRK-I-------------------------KAAEYLECSAKLNEGLDQVF  189 (205)
Q Consensus       139 l~~~~~~~~~-~~~-~~-~~~~~~~~~~~~~~~-~-------------------------~~~~~~~~Sa~~~~~i~~~~  189 (205)
                      +......... ... .. ....+.+++..+... .                         ....+++|||++..||+.+|
T Consensus       240 L~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~vF  319 (340)
T 4fid_A          240 LFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRVF  319 (340)
T ss_dssp             HHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHHH
T ss_pred             hhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHHH
Confidence            9754321111 000 00 001245565444332 2                         12448999999999999999


Q ss_pred             HHHHHHHHh
Q psy15714        190 IAAVRSAVK  198 (205)
Q Consensus       190 ~~i~~~~~~  198 (205)
                      ..+.+.++.
T Consensus       320 ~~v~~~Il~  328 (340)
T 4fid_A          320 MLAVDVIMK  328 (340)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999999887

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.86  E-value=1.9e-22  Score=162.30  Aligned_cols=152  Identities=18%  Similarity=0.168  Sum_probs=99.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCC--CCCcCccccccceeEEECCEEEEEEEEEcCCCc--------ccccccccCcC
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTENKFP--TDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQE--------DYERLRPMSYP   93 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~--------~~~~~~~~~~~   93 (205)
                      .+|+++|.+|+|||||++++.+..+.  ..+..++.+.....+..++  ..+.+|||||.+        .++.....+++
T Consensus         4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~   81 (436)
T 2hjg_A            4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLN--YDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD   81 (436)
T ss_dssp             CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCS--SCCEEEC---------CHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECC--ceEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence            68999999999999999999987653  2222222222112222233  569999999985        45666667889


Q ss_pred             CCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCce
Q psy15714         94 NTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAE  173 (205)
Q Consensus        94 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (205)
                      .+|++++|+|+.+..+..+.  .+...+++.  ++|+++|+||+|+.....           ..     .++. .++...
T Consensus        82 ~ad~il~vvD~~~~~~~~d~--~~~~~l~~~--~~pvilv~NK~D~~~~~~-----------~~-----~~~~-~lg~~~  140 (436)
T 2hjg_A           82 EADVIIFMVNGREGVTAADE--EVAKILYRT--KKPVVLAVNKLDNTEMRA-----------NI-----YDFY-SLGFGE  140 (436)
T ss_dssp             HCSEEEEEEETTTCSCHHHH--HHHHHHTTC--CSCEEEEEECCCC----------------CC-----CSSG-GGSSCC
T ss_pred             hCCEEEEEEeCCCCCCHHHH--HHHHHHHHc--CCCEEEEEECccCccchh-----------hH-----HHHH-HcCCCC
Confidence            99999999999988776552  455555543  899999999999875421           00     0111 234435


Q ss_pred             EEEcccCCCCCHHHHHHHHHHHHHh
Q psy15714        174 YLECSAKLNEGLDQVFIAAVRSAVK  198 (205)
Q Consensus       174 ~~~~Sa~~~~~i~~~~~~i~~~~~~  198 (205)
                      ++++||++|.|++++|+++.+.+.+
T Consensus       141 ~~~iSA~~g~gv~~L~~~i~~~l~~  165 (436)
T 2hjg_A          141 PYPISGTHGLGLGDLLDAVAEHFKN  165 (436)
T ss_dssp             CEECBTTTTBTHHHHHHHHHHTGGG
T ss_pred             eEEEeCcCCCChHHHHHHHHHhcCc
Confidence            8999999999999999999988753

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.86  E-value=5.6e-21  Score=152.62  Aligned_cols=166  Identities=18%  Similarity=0.114  Sum_probs=109.4

Q ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCC---CCCCcC--ccccccce-eEEE-------------C--C----EEEEEE
Q psy15714         20 VHKALKVTTVGDGMVGKTCLLITHTENKF---PTDYVP--TVFDNYPD-TITV-------------D--N----KTYDVT   74 (205)
Q Consensus        20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~---~~~~~~--t~~~~~~~-~~~~-------------~--~----~~~~~~   74 (205)
                      ....++|+++|+.++|||||+++|.+...   .....+  |+...+.. ....             +  +    ....+.
T Consensus         7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~   86 (410)
T 1kk1_A            7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS   86 (410)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence            45679999999999999999999985432   222222  22221111 1100             1  1    136899


Q ss_pred             EEEcCCCcccccccccCcCCCcEEEEEEECCCcc-hHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhc
Q psy15714         75 LWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTS-SYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAE  153 (205)
Q Consensus        75 i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~  153 (205)
                      +||+||++.|.......+..+|++|+|+|+++.. ..+. . +.+..+... ...|+++++||+|+......        
T Consensus        87 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt-~-e~l~~~~~~-~~~~iivviNK~Dl~~~~~~--------  155 (410)
T 1kk1_A           87 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQT-R-EHLMALQII-GQKNIIIAQNKIELVDKEKA--------  155 (410)
T ss_dssp             EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHH-H-HHHHHHHHH-TCCCEEEEEECGGGSCHHHH--------
T ss_pred             EEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhH-H-HHHHHHHHc-CCCcEEEEEECccCCCHHHH--------
Confidence            9999999999887777788999999999999653 1112 1 222233333 23589999999999764311        


Q ss_pred             cccccHHHHHHHHHHc--CCceEEEcccCCCCCHHHHHHHHHHHHHh
Q psy15714        154 VDLVSTSQGKKMRRKI--KAAEYLECSAKLNEGLDQVFIAAVRSAVK  198 (205)
Q Consensus       154 ~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  198 (205)
                        ....++.+.+.+..  ...+++++||++|+|+++++++|.+.+..
T Consensus       156 --~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~  200 (410)
T 1kk1_A          156 --LENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPT  200 (410)
T ss_dssp             --HHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred             --HHHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence              11233445555432  23459999999999999999999876543

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.86  E-value=6.8e-21  Score=153.12  Aligned_cols=163  Identities=13%  Similarity=0.065  Sum_probs=105.1

Q ss_pred             ccceeeEEEEECCCCCCHHHHHHHHhcCC--CCCCC------------------------cCc---ccccc-ceeEEECC
Q psy15714         19 SVHKALKVTTVGDGMVGKTCLLITHTENK--FPTDY------------------------VPT---VFDNY-PDTITVDN   68 (205)
Q Consensus        19 ~~~~~~ki~v~G~~~~GKstli~~~~~~~--~~~~~------------------------~~t---~~~~~-~~~~~~~~   68 (205)
                      .....++|+++|.+++|||||+++|+...  +....                        .+.   .+... .....+..
T Consensus        13 ~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~   92 (439)
T 3j2k_7           13 PKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFET   92 (439)
T ss_pred             CCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEec
Confidence            44677999999999999999999995431  11110                        000   00111 01111222


Q ss_pred             EEEEEEEEEcCCCcccccccccCcCCCcEEEEEEECCCcch---HH---HHHHHHHHHHhhhCCCCC-EEEEeeCccccc
Q psy15714         69 KTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSS---YE---NILSKWYPELKHHCPKVP-IILVGTKADLRS  141 (205)
Q Consensus        69 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~  141 (205)
                      ....+.|||+||+++|.......+..+|++++|+|+++...   +.   ... +.+..+...  ++| +++++||+|+..
T Consensus        93 ~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~-e~l~~~~~~--~v~~iIvviNK~Dl~~  169 (439)
T 3j2k_7           93 EKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTR-EHAMLAKTA--GVKHLIVLINKMDDPT  169 (439)
T ss_pred             CCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHH-HHHHHHHHc--CCCeEEEEeecCCCcc
Confidence            33589999999999999888889999999999999988642   11   111 233333333  677 999999999964


Q ss_pred             CchhhhhhhhhccccccHHHHHHHHHHcCC-----ceEEEcccCCCCCHHHHHH
Q psy15714        142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKA-----AEYLECSAKLNEGLDQVFI  190 (205)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~~~  190 (205)
                      ........      ....++...+.+..+.     .+++++||++|+|++++++
T Consensus       170 ~~~~~~~~------~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          170 VNWSNERY------EECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             cchHHHHH------HHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence            32111100      1223445556666553     3599999999999999654

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.86  E-value=2.2e-20  Score=146.52  Aligned_cols=162  Identities=17%  Similarity=0.134  Sum_probs=109.9

Q ss_pred             eE-EEEECCCCCCHHHHHHHHhcCCCCC-CCcCccccccceeEEECCEEEEEEEEEcCCCc---------ccccccccCc
Q psy15714         24 LK-VTTVGDGMVGKTCLLITHTENKFPT-DYVPTVFDNYPDTITVDNKTYDVTLWDTAGQE---------DYERLRPMSY   92 (205)
Q Consensus        24 ~k-i~v~G~~~~GKstli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~---------~~~~~~~~~~   92 (205)
                      ++ |+++|.+|+|||||++++.+..+.. ....++.+.....+.+++  ..+.+||++|..         .++..+. .+
T Consensus       179 ~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~tl~-~~  255 (364)
T 2qtf_A          179 IPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVTLS-EA  255 (364)
T ss_dssp             CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHHHH-GG
T ss_pred             CcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHHHH-HH
Confidence            44 9999999999999999999877532 223333334456677888  468999999962         2333333 47


Q ss_pred             CCCcEEEEEEECCCcc--hHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHc
Q psy15714         93 PNTDCFLLCFSIGSTS--SYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKI  169 (205)
Q Consensus        93 ~~~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (205)
                      ..+|++++|+|++++.  ...... .|...+.... .+.|+++|+||+|+.+...           ....+.+..++..+
T Consensus       256 ~~aD~il~VvD~s~~~~~~~~~~~-~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~-----------~~~~~~~~~l~~~l  323 (364)
T 2qtf_A          256 KYSDALILVIDSTFSENLLIETLQ-SSFEILREIGVSGKPILVTLNKIDKINGDL-----------YKKLDLVEKLSKEL  323 (364)
T ss_dssp             GGSSEEEEEEETTSCHHHHHHHHH-HHHHHHHHHTCCSCCEEEEEECGGGCCSCH-----------HHHHHHHHHHHHHH
T ss_pred             HhCCEEEEEEECCCCcchHHHHHH-HHHHHHHHhCcCCCCEEEEEECCCCCCchH-----------HHHHHHHHHHHHHh
Confidence            8899999999999876  444443 5666666654 6899999999999875421           00112333344444


Q ss_pred             -C-CceEEEcccCCCCCHHHHHHHHHHHHHhhc
Q psy15714        170 -K-AAEYLECSAKLNEGLDQVFIAAVRSAVKKQ  200 (205)
Q Consensus       170 -~-~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~  200 (205)
                       . ..+++++||+++.|+++++++|.+.+....
T Consensus       324 ~~~~~~~~~~SA~~g~gi~~L~~~I~~~l~~~~  356 (364)
T 2qtf_A          324 YSPIFDVIPISALKRTNLELLRDKIYQLATQLS  356 (364)
T ss_dssp             CSCEEEEEECBTTTTBSHHHHHHHHHHHHHHHC
T ss_pred             cCCCCcEEEEECCCCcCHHHHHHHHHHHhcccC
Confidence             2 234899999999999999999998776543

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.86  E-value=4.4e-21  Score=158.41  Aligned_cols=160  Identities=19%  Similarity=0.192  Sum_probs=111.6

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcC--CCCCC-----CcCc------ccccc---ceeEEE---CCEEEEEEEEEcCCC
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTEN--KFPTD-----YVPT------VFDNY---PDTITV---DNKTYDVTLWDTAGQ   81 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~--~~~~~-----~~~t------~~~~~---~~~~~~---~~~~~~~~i~D~~g~   81 (205)
                      .+..+|+++|+.++|||||+++++..  .+...     ...+      .+...   ...+.+   ++..+.++||||||+
T Consensus         4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh   83 (600)
T 2ywe_A            4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH   83 (600)
T ss_dssp             GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence            34679999999999999999999752  22111     0000      01111   111212   456789999999999


Q ss_pred             cccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHH
Q psy15714         82 EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQ  161 (205)
Q Consensus        82 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~  161 (205)
                      .+|.......+..+|++|+|+|+++..+.+... .|..... .  ++|+++|+||+|+...+.              ...
T Consensus        84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~-~~~~a~~-~--~ipiIvviNKiDl~~a~~--------------~~v  145 (600)
T 2ywe_A           84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVA-NFWKAVE-Q--DLVIIPVINKIDLPSADV--------------DRV  145 (600)
T ss_dssp             GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHH-HHHHHHH-T--TCEEEEEEECTTSTTCCH--------------HHH
T ss_pred             HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH-C--CCCEEEEEeccCccccCH--------------HHH
Confidence            999888778899999999999999998887765 5654443 3  899999999999976431              122


Q ss_pred             HHHHHHHcCCc--eEEEcccCCCCCHHHHHHHHHHHHHh
Q psy15714        162 GKKMRRKIKAA--EYLECSAKLNEGLDQVFIAAVRSAVK  198 (205)
Q Consensus       162 ~~~~~~~~~~~--~~~~~Sa~~~~~i~~~~~~i~~~~~~  198 (205)
                      ..++...++..  .++++||++|.|++++|+++++.+..
T Consensus       146 ~~el~~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp~  184 (600)
T 2ywe_A          146 KKQIEEVLGLDPEEAILASAKEGIGIEEILEAIVNRIPP  184 (600)
T ss_dssp             HHHHHHTSCCCGGGCEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred             HHHHHHhhCCCcccEEEEEeecCCCchHHHHHHHHhccc
Confidence            34444444442  38999999999999999999987654

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.86  E-value=2.3e-21  Score=160.35  Aligned_cols=159  Identities=18%  Similarity=0.247  Sum_probs=108.9

Q ss_pred             eeeEEEEECCCCCCHHHHHHHHhcC--CCCCC-----CcCc------ccccc-ceeEEE-----CCEEEEEEEEEcCCCc
Q psy15714         22 KALKVTTVGDGMVGKTCLLITHTEN--KFPTD-----YVPT------VFDNY-PDTITV-----DNKTYDVTLWDTAGQE   82 (205)
Q Consensus        22 ~~~ki~v~G~~~~GKstli~~~~~~--~~~~~-----~~~t------~~~~~-~~~~~~-----~~~~~~~~i~D~~g~~   82 (205)
                      +..+|+++|+.++|||||+++++..  .+...     +..+      .+... .....+     ++..+.++||||||+.
T Consensus         3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~   82 (599)
T 3cb4_D            3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV   82 (599)
T ss_dssp             TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence            3468999999999999999999862  22110     1110      11111 111222     5567899999999999


Q ss_pred             ccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHH
Q psy15714         83 DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQG  162 (205)
Q Consensus        83 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  162 (205)
                      +|.......+..+|++|+|+|+++..+.+... .|..... .  ++|+++|+||+|+...+.              .+..
T Consensus        83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~-~~~~~~~-~--~ipiIvViNKiDl~~a~~--------------~~v~  144 (599)
T 3cb4_D           83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLA-NCYTAME-M--DLEVVPVLNKIDLPAADP--------------ERVA  144 (599)
T ss_dssp             GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHH-HHHHHHH-T--TCEEEEEEECTTSTTCCH--------------HHHH
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHH-HHHHHHH-C--CCCEEEeeeccCcccccH--------------HHHH
Confidence            99888888899999999999999987777765 5655443 3  799999999999976431              2223


Q ss_pred             HHHHHHcCCc--eEEEcccCCCCCHHHHHHHHHHHHHh
Q psy15714        163 KKMRRKIKAA--EYLECSAKLNEGLDQVFIAAVRSAVK  198 (205)
Q Consensus       163 ~~~~~~~~~~--~~~~~Sa~~~~~i~~~~~~i~~~~~~  198 (205)
                      .++...++..  .++++||++|.|++++|+++.+.+..
T Consensus       145 ~ei~~~lg~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~  182 (599)
T 3cb4_D          145 EEIEDIVGIDATDAVRCSAKTGVGVQDVLERLVRDIPP  182 (599)
T ss_dssp             HHHHHHTCCCCTTCEEECTTTCTTHHHHHHHHHHHSCC
T ss_pred             HHHHHHhCCCcceEEEeecccCCCchhHHHHHhhcCCC
Confidence            4445555442  38999999999999999999887654

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.85  E-value=3.2e-21  Score=153.84  Aligned_cols=164  Identities=15%  Similarity=0.085  Sum_probs=113.9

Q ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcC--------CCCCC--CcC-----cccccc-ceeEEECCEEEEEEEEEcCCCcc
Q psy15714         20 VHKALKVTTVGDGMVGKTCLLITHTEN--------KFPTD--YVP-----TVFDNY-PDTITVDNKTYDVTLWDTAGQED   83 (205)
Q Consensus        20 ~~~~~ki~v~G~~~~GKstli~~~~~~--------~~~~~--~~~-----t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~   83 (205)
                      ....++|+++|++++|||||+++|.+.        .+...  .+.     +.+... .....+......+.|||+||+++
T Consensus         8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~   87 (405)
T 2c78_A            8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD   87 (405)
T ss_dssp             -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG
T ss_pred             CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH
Confidence            456799999999999999999999873        22110  000     111111 12233333446799999999999


Q ss_pred             cccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCC-EEEEeeCcccccCchhhhhhhhhccccccHHHH
Q psy15714         84 YERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVP-IILVGTKADLRSENKTIDKKKAAEVDLVSTSQG  162 (205)
Q Consensus        84 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  162 (205)
                      |.......+..+|++|+|+|+++....+. . +|+..+...  ++| +++++||+|+.......         ....++.
T Consensus        88 f~~~~~~~~~~aD~~ilVvda~~g~~~qt-~-~~l~~~~~~--~ip~iivviNK~Dl~~~~~~~---------~~~~~~~  154 (405)
T 2c78_A           88 YIKNMITGAAQMDGAILVVSAADGPMPQT-R-EHILLARQV--GVPYIVVFMNKVDMVDDPELL---------DLVEMEV  154 (405)
T ss_dssp             GHHHHHHHHTTCSSEEEEEETTTCCCHHH-H-HHHHHHHHT--TCCCEEEEEECGGGCCCHHHH---------HHHHHHH
T ss_pred             HHHHHHHHHHHCCEEEEEEECCCCCcHHH-H-HHHHHHHHc--CCCEEEEEEECccccCcHHHH---------HHHHHHH
Confidence            98888888999999999999998765444 2 566666655  788 89999999997522100         1123456


Q ss_pred             HHHHHHcCC----ceEEEcccCCCCC------------------HHHHHHHHHHHH
Q psy15714        163 KKMRRKIKA----AEYLECSAKLNEG------------------LDQVFIAAVRSA  196 (205)
Q Consensus       163 ~~~~~~~~~----~~~~~~Sa~~~~~------------------i~~~~~~i~~~~  196 (205)
                      +.+++..+.    .+++++||++|+|                  ++++++.+.+.+
T Consensus       155 ~~~l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~l  210 (405)
T 2c78_A          155 RDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYI  210 (405)
T ss_dssp             HHHHHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhc
Confidence            667777663    5699999999987                  777777776654

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.85  E-value=1.1e-20  Score=156.41  Aligned_cols=170  Identities=16%  Similarity=0.138  Sum_probs=107.5

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCC----CcCccccccce-------------eEEECCEEEEEEEEEcCCCcc
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTENKFPTD----YVPTVFDNYPD-------------TITVDNKTYDVTLWDTAGQED   83 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~----~~~t~~~~~~~-------------~~~~~~~~~~~~i~D~~g~~~   83 (205)
                      .+..+|+++|++++|||||++++.+..+...    ..++.+..+..             ...++.....+++|||||++.
T Consensus         3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~   82 (594)
T 1g7s_A            3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA   82 (594)
T ss_dssp             ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence            4568999999999999999999987654322    12222211110             000001112599999999999


Q ss_pred             cccccccCcCCCcEEEEEEECCC---cchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhh---hhhhhhccc--
Q psy15714         84 YERLRPMSYPNTDCFLLCFSIGS---TSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTI---DKKKAAEVD--  155 (205)
Q Consensus        84 ~~~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~---~~~~~~~~~--  155 (205)
                      |...+...++.+|++|+|+|+++   +.+++.+     ..+...  ++|+++++||+|+.......   ...+.....  
T Consensus        83 F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l-----~~l~~~--~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~  155 (594)
T 1g7s_A           83 FTTLRKRGGALADLAILIVDINEGFKPQTQEAL-----NILRMY--RTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDI  155 (594)
T ss_dssp             CTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHH-----HHHHHT--TCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCH
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCccHhHHHHH-----HHHHHc--CCeEEEEecccccccccccccCCchHHHHHHhHH
Confidence            99999989999999999999998   4444433     233343  89999999999997432100   000000000  


Q ss_pred             cc---cHH---HHHHHHHHc--------------CCceEEEcccCCCCCHHHHHHHHHHHHH
Q psy15714        156 LV---STS---QGKKMRRKI--------------KAAEYLECSAKLNEGLDQVFIAAVRSAV  197 (205)
Q Consensus       156 ~~---~~~---~~~~~~~~~--------------~~~~~~~~Sa~~~~~i~~~~~~i~~~~~  197 (205)
                      .+   -.+   +........              ...+++++||++|+|++++++++...+.
T Consensus       156 ~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~  217 (594)
T 1g7s_A          156 QVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ  217 (594)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence            00   000   111111111              2236999999999999999999998764

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.85  E-value=2.4e-22  Score=157.78  Aligned_cols=163  Identities=15%  Similarity=0.113  Sum_probs=90.5

Q ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcC-CCCCCCc--------Ccccccc-ceeEEECCEEEEEEEEEcCCC-------c
Q psy15714         20 VHKALKVTTVGDGMVGKTCLLITHTEN-KFPTDYV--------PTVFDNY-PDTITVDNKTYDVTLWDTAGQ-------E   82 (205)
Q Consensus        20 ~~~~~ki~v~G~~~~GKstli~~~~~~-~~~~~~~--------~t~~~~~-~~~~~~~~~~~~~~i~D~~g~-------~   82 (205)
                      ....++|+|+|++|+|||||++++++. .+...+.        ++..... ...+..++..+.+++||+||.       +
T Consensus        34 ~~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e  113 (361)
T 2qag_A           34 KGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRD  113 (361)
T ss_dssp             HCCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC------------
T ss_pred             CCCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHH
Confidence            345789999999999999999997654 3333222        2222221 223334566788999999998       5


Q ss_pred             ccccccc-------cCc-----------CCCcEEEEEEECCC-cchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCc
Q psy15714         83 DYERLRP-------MSY-----------PNTDCFLLCFSIGS-TSSYENILSKWYPELKHHCPKVPIILVGTKADLRSEN  143 (205)
Q Consensus        83 ~~~~~~~-------~~~-----------~~~~~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~  143 (205)
                      .++.+..       .++           ...++.+++|++++ ..++..+...|+..+   ..++|+++|+||+|+...+
T Consensus       114 ~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l---~~~~piIlV~NK~Dl~~~~  190 (361)
T 2qag_A          114 CFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI---HNKVNIVPVIAKADTLTLK  190 (361)
T ss_dssp             --CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT---CS-SCEEEEEECCSSSCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh---ccCCCEEEEEECCCCCCHH
Confidence            5555543       222           33333345555554 455555543555544   3589999999999997654


Q ss_pred             hhhhhhhhhccccccH--HHHHHHHHHcCCceEEEcccCCCCCHHHHHHHHHHHHHhh
Q psy15714        144 KTIDKKKAAEVDLVST--SQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKK  199 (205)
Q Consensus       144 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  199 (205)
                                  .+..  +++..+++..++. ++++||+++.+ ++.|.++.+.+...
T Consensus       191 ------------ev~~~k~~i~~~~~~~~i~-~~~~Sa~~~~~-~e~~~~l~~~i~~~  234 (361)
T 2qag_A          191 ------------ERERLKKRILDEIEEHNIK-IYHLPDAESDE-DEDFKEQTRLLKAS  234 (361)
T ss_dssp             ------------HHHHHHHHHHHHTTCC-CC-SCCCC----------CHHHHHHHHHT
T ss_pred             ------------HHHHHHHHHHHHHHHCCCC-EEeCCCcCCCc-chhHHHHHHHHHhc
Confidence                        2322  5677777777776 99999999999 89999888887664

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.85  E-value=3.1e-22  Score=162.04  Aligned_cols=161  Identities=20%  Similarity=0.250  Sum_probs=106.2

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEE
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFL   99 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   99 (205)
                      .+..+|+++|++++|||||++++....+.....+.+.... ...+..++  ..+.+|||||++.|...+...+..+|+++
T Consensus         2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aI   79 (501)
T 1zo1_I            2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQATDIVV   79 (501)
T ss_dssp             CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSCSSEE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhCCEEE
Confidence            3567999999999999999999987654432222211111 11222334  36899999999999999999999999999


Q ss_pred             EEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcC-CceEEEcc
Q psy15714        100 LCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIK-AAEYLECS  178 (205)
Q Consensus       100 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~S  178 (205)
                      +|+|+++....+..  +++..+...  ++|+++++||+|+...+...-....... ..       ++..++ ..+++++|
T Consensus        80 LVVda~~g~~~qT~--e~l~~~~~~--~vPiIVviNKiDl~~~~~~~v~~~l~~~-~~-------~~~~~~~~~~~v~vS  147 (501)
T 1zo1_I           80 LVVAADDGVMPQTI--EAIQHAKAA--QVPVVVAVNKIDKPEADPDRVKNELSQY-GI-------LPEEWGGESQFVHVS  147 (501)
T ss_dssp             EEEETTTBSCTTTH--HHHHHHHHT--TCCEEEEEECSSSSTTCCCCTTCCCCCC-CC-------CTTCCSSSCEEEECC
T ss_pred             EEeecccCccHHHH--HHHHHHHhc--CceEEEEEEeccccccCHHHHHHHHHHh-hh-------hHHHhCCCccEEEEe
Confidence            99999885322222  222333333  8999999999999754321000000000 00       111222 24699999


Q ss_pred             cCCCCCHHHHHHHHHHH
Q psy15714        179 AKLNEGLDQVFIAAVRS  195 (205)
Q Consensus       179 a~~~~~i~~~~~~i~~~  195 (205)
                      |++|+|++++|+++...
T Consensus       148 AktG~gI~eLle~I~~~  164 (501)
T 1zo1_I          148 AKAGTGIDELLDAILLQ  164 (501)
T ss_dssp             TTTCTTCTTHHHHTTTT
T ss_pred             eeeccCcchhhhhhhhh
Confidence            99999999999998753

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.85  E-value=1.8e-21  Score=139.96  Aligned_cols=115  Identities=15%  Similarity=0.127  Sum_probs=85.5

Q ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCC---CcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCC--
Q psy15714         20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTD---YVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPN--   94 (205)
Q Consensus        20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~--   94 (205)
                      ....++|+++|++|+|||||++++.+..+...   +.++...        +...+.+.+||+||++.++..+..++..  
T Consensus        45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~--------~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~  116 (193)
T 2ged_A           45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA--------DYDGSGVTLVDFPGHVKLRYKLSDYLKTRA  116 (193)
T ss_dssp             -CCCCEEEEECCTTSSHHHHHHHHHHSSCC--------------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHG
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceee--------eecCCeEEEEECCCCchHHHHHHHHHHhhc
Confidence            35678999999999999999999999876441   1222211        1133579999999999988776666665  


Q ss_pred             --CcEEEEEEECC-CcchHHHHHHHHHHHHhhh-----CCCCCEEEEeeCcccccCc
Q psy15714         95 --TDCFLLCFSIG-STSSYENILSKWYPELKHH-----CPKVPIILVGTKADLRSEN  143 (205)
Q Consensus        95 --~~~~i~v~d~~-~~~s~~~~~~~~~~~~~~~-----~~~~p~ivv~nK~Dl~~~~  143 (205)
                        +|++++|||++ +..++..+. .|+..+...     ..++|+++|+||+|+....
T Consensus       117 ~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~  172 (193)
T 2ged_A          117 KFVKGLIFMVDSTVDPKKLTTTA-EFLVDILSITESSCENGIDILIACNKSELFTAR  172 (193)
T ss_dssp             GGEEEEEEEEETTCCHHHHHHHH-HHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred             ccCCEEEEEEECCCCchhHHHHH-HHHHHHHhhhhhccccCCCEEEEEEchHhcCCC
Confidence              89999999999 888998887 555444332     2589999999999998754

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.85  E-value=1.5e-21  Score=148.11  Aligned_cols=160  Identities=18%  Similarity=0.159  Sum_probs=89.7

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCC-CCCC-------cCcccccc-ceeEEECCEEEEEEEEEcCCCcc-------c
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTENKF-PTDY-------VPTVFDNY-PDTITVDNKTYDVTLWDTAGQED-------Y   84 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~~~-~~~~-------~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~-------~   84 (205)
                      ...++|+|+|.+|+|||||+|++++... ...+       .+|..... ...+..++..+.+.||||||...       +
T Consensus         6 g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~   85 (274)
T 3t5d_A            6 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW   85 (274)
T ss_dssp             -CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTT
T ss_pred             ccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhH
Confidence            4579999999999999999999876544 3332       33333222 22333455567999999999732       2


Q ss_pred             cccc------------------ccC--cCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCch
Q psy15714         85 ERLR------------------PMS--YPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENK  144 (205)
Q Consensus        85 ~~~~------------------~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~  144 (205)
                      ..+.                  +..  -..+|+++++++.+... +......++..+..   ++|+++|+||+|+.....
T Consensus        86 ~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~-~~~~d~~~l~~l~~---~~pvi~V~nK~D~~~~~e  161 (274)
T 3t5d_A           86 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHG-LKPLDIEFMKRLHE---KVNIIPLIAKADTLTPEE  161 (274)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSS-CCHHHHHHHHHHTT---TSCEEEEESSGGGSCHHH
T ss_pred             HHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCC-CCHHHHHHHHHHhc---cCCEEEEEeccCCCCHHH
Confidence            1111                  111  12367888888766532 22222255555554   799999999999865431


Q ss_pred             hhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCCCCCHHHHHHHHHHH
Q psy15714        145 TIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRS  195 (205)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  195 (205)
                      .          ....+.........++. ++.+||.+++|+++++++|.+.
T Consensus       162 ~----------~~~~~~i~~~l~~~~i~-v~~~sa~~~~~~~~l~~~l~~~  201 (274)
T 3t5d_A          162 C----------QQFKKQIMKEIQEHKIK-IYEFPETDDEEENKLVKKIKDR  201 (274)
T ss_dssp             H----------HHHHHHHHHHHHHTTCC-CCCC-----------CHHHHHT
T ss_pred             H----------HHHHHHHHHHHHHcCCe-EEcCCCCCChhHHHHHHHHhcC
Confidence            1          11223445555566776 8999999999999999988765

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.85  E-value=4.3e-21  Score=157.01  Aligned_cols=117  Identities=15%  Similarity=0.129  Sum_probs=84.1

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCC--C---------------CCCCcCc---ccccc-c--eeEEECCEEEEEEEEE
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTENK--F---------------PTDYVPT---VFDNY-P--DTITVDNKTYDVTLWD   77 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~~--~---------------~~~~~~t---~~~~~-~--~~~~~~~~~~~~~i~D   77 (205)
                      .+..+|+++|.+++|||||+++|+...  .               ...+.+.   .+... .  ..+...+  +.+.|||
T Consensus        11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~liD   88 (528)
T 3tr5_A           11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKD--YLINLLD   88 (528)
T ss_dssp             HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETT--EEEEEEC
T ss_pred             hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCC--EEEEEEE
Confidence            456799999999999999999996211  0               0000000   01111 1  2233344  6799999


Q ss_pred             cCCCcccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCc
Q psy15714         78 TAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSEN  143 (205)
Q Consensus        78 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~  143 (205)
                      |||+.+|.......++.+|++|+|+|+++..+.....  +...+...  ++|+++|+||+|+....
T Consensus        89 TPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~--~~~~~~~~--~iPiivviNK~Dl~~~~  150 (528)
T 3tr5_A           89 TPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIK--LMEVCRLR--HTPIMTFINKMDRDTRP  150 (528)
T ss_dssp             CCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHH--HHHHHHTT--TCCEEEEEECTTSCCSC
T ss_pred             CCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH--HHHHHHHc--CCCEEEEEeCCCCcccc
Confidence            9999999988888999999999999999987777653  44455554  89999999999997554

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.84  E-value=4.6e-21  Score=155.98  Aligned_cols=159  Identities=14%  Similarity=0.038  Sum_probs=100.2

Q ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCC--CCCCC----------------------cCc-----ccccc-ceeEEECCE
Q psy15714         20 VHKALKVTTVGDGMVGKTCLLITHTENK--FPTDY----------------------VPT-----VFDNY-PDTITVDNK   69 (205)
Q Consensus        20 ~~~~~ki~v~G~~~~GKstli~~~~~~~--~~~~~----------------------~~t-----~~~~~-~~~~~~~~~   69 (205)
                      .+..+||+++|.+++|||||+++|+...  +...+                      ..+     .+... .....+...
T Consensus        30 ~k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~  109 (483)
T 3p26_A           30 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH  109 (483)
T ss_dssp             SCCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECS
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecC
Confidence            4567999999999999999999997541  11000                      000     01111 122233344


Q ss_pred             EEEEEEEEcCCCcccccccccCcCCCcEEEEEEECCCcchHHH-----HHHHHHHHHhhhCCCCCEEEEeeCcccccCch
Q psy15714         70 TYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYEN-----ILSKWYPELKHHCPKVPIILVGTKADLRSENK  144 (205)
Q Consensus        70 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~-----~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~  144 (205)
                      ...+.|||+||+++|.......+..+|++|+|+|+++..+...     ...+.+..+... ...|+++|+||+|+...+.
T Consensus       110 ~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~-~~~~iIvviNK~Dl~~~~~  188 (483)
T 3p26_A          110 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL-GIHNLIIAMNKMDNVDWSQ  188 (483)
T ss_dssp             SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT-TCCCEEEEEECGGGGTTCH
T ss_pred             CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc-CCCcEEEEEECcCcccchH
Confidence            4689999999999999988889999999999999998643321     111223333332 2356999999999976431


Q ss_pred             hhhhhhhhccccccHHHHHHHHHHcCC----ceEEEcccCCCCCHHH
Q psy15714        145 TIDKKKAAEVDLVSTSQGKKMRRKIKA----AEYLECSAKLNEGLDQ  187 (205)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~  187 (205)
                      ...        ....++...+.+..+.    .+++++||++|+|+++
T Consensus       189 ~~~--------~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e  227 (483)
T 3p26_A          189 QRF--------EEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK  227 (483)
T ss_dssp             HHH--------HHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred             HHH--------HHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence            100        1122334444444443    4589999999999975

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.84  E-value=6.3e-21  Score=151.70  Aligned_cols=163  Identities=13%  Similarity=0.061  Sum_probs=111.4

Q ss_pred             eeeEEEEECCCCCCHHHHHHHHhcCC-------CCCC--CcCc-----ccccc-ceeEEECCEEEEEEEEEcCCCccccc
Q psy15714         22 KALKVTTVGDGMVGKTCLLITHTENK-------FPTD--YVPT-----VFDNY-PDTITVDNKTYDVTLWDTAGQEDYER   86 (205)
Q Consensus        22 ~~~ki~v~G~~~~GKstli~~~~~~~-------~~~~--~~~t-----~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~   86 (205)
                      ..+||+++|++++|||||+++|.+..       +...  ....     .+... .....+......+.|||+||+++|..
T Consensus         2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~   81 (397)
T 1d2e_A            2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK   81 (397)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred             CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence            45899999999999999999998631       1110  0000     00000 01122333346789999999999988


Q ss_pred             ccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCC-EEEEeeCcccccCchhhhhhhhhccccccHHHHHHH
Q psy15714         87 LRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVP-IILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKM  165 (205)
Q Consensus        87 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (205)
                      .....+..+|++|+|+|+++....+..  +++..+...  ++| +++++||+|+.......         ....++.+++
T Consensus        82 ~~~~~~~~aD~~ilVvda~~g~~~qt~--e~l~~~~~~--~vp~iivviNK~Dl~~~~~~~---------~~~~~~~~~~  148 (397)
T 1d2e_A           82 NMITGTAPLDGCILVVAANDGPMPQTR--EHLLLARQI--GVEHVVVYVNKADAVQDSEMV---------ELVELEIREL  148 (397)
T ss_dssp             HHHHTSSCCSEEEEEEETTTCSCHHHH--HHHHHHHHT--TCCCEEEEEECGGGCSCHHHH---------HHHHHHHHHH
T ss_pred             HHHhhHhhCCEEEEEEECCCCCCHHHH--HHHHHHHHc--CCCeEEEEEECcccCCCHHHH---------HHHHHHHHHH
Confidence            878889999999999999987654443  333445444  788 78999999997522100         1233566777


Q ss_pred             HHHcCC----ceEEEcccCCCCC----------HHHHHHHHHHHHH
Q psy15714        166 RRKIKA----AEYLECSAKLNEG----------LDQVFIAAVRSAV  197 (205)
Q Consensus       166 ~~~~~~----~~~~~~Sa~~~~~----------i~~~~~~i~~~~~  197 (205)
                      ++..+.    .+++++||++|.|          ++++++.+.+.+.
T Consensus       149 l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p  194 (397)
T 1d2e_A          149 LTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP  194 (397)
T ss_dssp             HHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred             HHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCC
Confidence            777764    4699999999764          8899988877654

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.84  E-value=1.1e-20  Score=151.96  Aligned_cols=159  Identities=15%  Similarity=0.091  Sum_probs=105.9

Q ss_pred             ccceeeEEEEECCCCCCHHHHHHHHhcCC--CCCC----------CcCcccccc-----------------c---eeEEE
Q psy15714         19 SVHKALKVTTVGDGMVGKTCLLITHTENK--FPTD----------YVPTVFDNY-----------------P---DTITV   66 (205)
Q Consensus        19 ~~~~~~ki~v~G~~~~GKstli~~~~~~~--~~~~----------~~~t~~~~~-----------------~---~~~~~   66 (205)
                      .....+||+++|.+++|||||+++|+...  +...          ..++++..+                 +   ....+
T Consensus        20 ~~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~   99 (434)
T 1zun_B           20 ERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYF   99 (434)
T ss_dssp             TSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEE
T ss_pred             ccCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEe
Confidence            34567999999999999999999998653  1111          112211100                 0   01112


Q ss_pred             CCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCC-CEEEEeeCcccccCchh
Q psy15714         67 DNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKV-PIILVGTKADLRSENKT  145 (205)
Q Consensus        67 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-p~ivv~nK~Dl~~~~~~  145 (205)
                      ......+.|||+||++.|...+...+..+|++|+|+|+++....+..  +|+..+...  ++ |+++|+||+|+......
T Consensus       100 ~~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~--~~l~~~~~~--~~~~iIvviNK~Dl~~~~~~  175 (434)
T 1zun_B          100 STAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTR--RHSYIASLL--GIKHIVVAINKMDLNGFDER  175 (434)
T ss_dssp             ECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHH--HHHHHHHHT--TCCEEEEEEECTTTTTSCHH
T ss_pred             ecCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCeEEEEEEcCcCCcccHH
Confidence            22336799999999999988877889999999999999987644332  455555444  55 59999999999763210


Q ss_pred             hhhhhhhccccccHHHHHHHHHHcC--C--ceEEEcccCCCCCHHHHH
Q psy15714        146 IDKKKAAEVDLVSTSQGKKMRRKIK--A--AEYLECSAKLNEGLDQVF  189 (205)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~Sa~~~~~i~~~~  189 (205)
                      ..        ....++...+++.++  .  .+++++||++|+|++++|
T Consensus       176 ~~--------~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~  215 (434)
T 1zun_B          176 VF--------ESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKS  215 (434)
T ss_dssp             HH--------HHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCC
T ss_pred             HH--------HHHHHHHHHHHHHhCCCccCceEEEEeccCCCCccccc
Confidence            00        112455667777766  2  459999999999998753

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.84  E-value=9.4e-22  Score=159.08  Aligned_cols=159  Identities=16%  Similarity=0.109  Sum_probs=101.9

Q ss_pred             cccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCC--------Cccccccc
Q psy15714         18 KSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAG--------QEDYERLR   88 (205)
Q Consensus        18 ~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g--------~~~~~~~~   88 (205)
                      ...+...+|+++|.+|+|||||++++.+..+.. ...+.+... ............+.+|||||        ++.++...
T Consensus        18 ~~~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~-v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~   96 (456)
T 4dcu_A           18 GSHMGKPVVAIVGRPNVGKSTIFNRIAGERISI-VEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQA   96 (456)
T ss_dssp             -----CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHH
T ss_pred             hhhcCCCEEEEECCCCCcHHHHHHHHhCCCCcc-cCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHH
Confidence            334566899999999999999999999876531 122222222 22233333345799999999        66677777


Q ss_pred             ccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHH
Q psy15714         89 PMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRK  168 (205)
Q Consensus        89 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (205)
                      ..+++.+|++++|+|..+..+..+  ..+...+.+.  ++|+++|+||+|+.....                ...++ ..
T Consensus        97 ~~~~~~ad~il~VvD~~~~~~~~d--~~l~~~l~~~--~~pvilV~NK~D~~~~~~----------------~~~e~-~~  155 (456)
T 4dcu_A           97 EIAMDEADVIIFMVNGREGVTAAD--EEVAKILYRT--KKPVVLAVNKLDNTEMRA----------------NIYDF-YS  155 (456)
T ss_dssp             HHHHHHCSEEEEEEESSSCSCHHH--HHHHHHHTTC--CSCEEEEEECC-------------------------CCS-GG
T ss_pred             HhhHhhCCEEEEEEeCCCCCChHH--HHHHHHHHHc--CCCEEEEEECccchhhhh----------------hHHHH-HH
Confidence            778899999999999877544433  2455555553  899999999999864321                00001 12


Q ss_pred             cCCceEEEcccCCCCCHHHHHHHHHHHHHh
Q psy15714        169 IKAAEYLECSAKLNEGLDQVFIAAVRSAVK  198 (205)
Q Consensus       169 ~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  198 (205)
                      ++....+++||++|.|++++++++.+.+..
T Consensus       156 lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~  185 (456)
T 4dcu_A          156 LGFGEPYPISGTHGLGLGDLLDAVAEHFKN  185 (456)
T ss_dssp             GSSSSEEECCTTTCTTHHHHHHHHHTTGGG
T ss_pred             cCCCceEEeecccccchHHHHHHHHhhccc
Confidence            233346899999999999999999877643

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.83  E-value=4.8e-20  Score=134.23  Aligned_cols=164  Identities=13%  Similarity=0.062  Sum_probs=103.4

Q ss_pred             cccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccc-eeEEECCEEEEEEEEEcCCCcc----------ccc
Q psy15714         18 KSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYP-DTITVDNKTYDVTLWDTAGQED----------YER   86 (205)
Q Consensus        18 ~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~----------~~~   86 (205)
                      .......+|+++|++|+|||||++++.+..+...+.++.+.... ..+.+++   .+.+||+||...          ++.
T Consensus        21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~   97 (210)
T 1pui_A           21 LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQR   97 (210)
T ss_dssp             SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHH
T ss_pred             CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHH
Confidence            34556689999999999999999999987754444455544432 2233333   478999999742          222


Q ss_pred             ccccCc---CCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHH
Q psy15714         87 LRPMSY---PNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGK  163 (205)
Q Consensus        87 ~~~~~~---~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  163 (205)
                      ....++   ..++++++++|+++..+....  .+...+...  ++|+++++||+|+.+....          +...+.+.
T Consensus        98 ~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~--~~~~~~~~~--~~~~~~v~nK~D~~s~~~~----------~~~~~~~~  163 (210)
T 1pui_A           98 ALGEYLEKRQSLQGLVVLMDIRHPLKDLDQ--QMIEWAVDS--NIAVLVLLTKADKLASGAR----------KAQLNMVR  163 (210)
T ss_dssp             HHHHHHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHHT--TCCEEEEEECGGGSCHHHH----------HHHHHHHH
T ss_pred             HHHHHHHhhhcccEEEEEEECCCCCchhHH--HHHHHHHHc--CCCeEEEEecccCCCchhH----------HHHHHHHH
Confidence            222222   578999999999987655331  222333333  7999999999998754211          22234566


Q ss_pred             HHHHHcC-CceEEEcccCCCCCHHHHHHHHHHHHHh
Q psy15714        164 KMRRKIK-AAEYLECSAKLNEGLDQVFIAAVRSAVK  198 (205)
Q Consensus       164 ~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  198 (205)
                      .++...+ ...++++||+++.|++++++++.+.+.+
T Consensus       164 ~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~  199 (210)
T 1pui_A          164 EAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSE  199 (210)
T ss_dssp             HHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred             HHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhh
Confidence            6666554 3457899999999999999999887543

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.83  E-value=1.9e-20  Score=150.56  Aligned_cols=161  Identities=16%  Similarity=0.130  Sum_probs=105.7

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcC--CCCCCCcC---------------------------cccccc-ceeEEECCEE
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTEN--KFPTDYVP---------------------------TVFDNY-PDTITVDNKT   70 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~--~~~~~~~~---------------------------t~~~~~-~~~~~~~~~~   70 (205)
                      +..++|+++|++++|||||+++|+..  .+......                           ..+... .....+....
T Consensus         4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~   83 (435)
T 1jny_A            4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK   83 (435)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred             CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence            45689999999999999999999864  33211100                           000000 0011122334


Q ss_pred             EEEEEEEcCCCcccccccccCcCCCcEEEEEEECCCcchHHHHH------HHHHHHHhhhCCCC-CEEEEeeCcccccCc
Q psy15714         71 YDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENIL------SKWYPELKHHCPKV-PIILVGTKADLRSEN  143 (205)
Q Consensus        71 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~------~~~~~~~~~~~~~~-p~ivv~nK~Dl~~~~  143 (205)
                      ..+.|||+||+++|...+...+..+|++|+|+|+++ .+++...      .+++..+...  ++ |+++++||+|+....
T Consensus        84 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~--~~~~iivviNK~Dl~~~~  160 (435)
T 1jny_A           84 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTM--GLDQLIVAVNKMDLTEPP  160 (435)
T ss_dssp             CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHT--TCTTCEEEEECGGGSSST
T ss_pred             eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHc--CCCeEEEEEEcccCCCcc
Confidence            679999999999999888889999999999999998 6666433      1222222222  44 699999999997632


Q ss_pred             hhhhhhhhhccccccHHHHHHHHHHcCC----ceEEEcccCCCCCHHHHHH
Q psy15714        144 KTIDKKKAAEVDLVSTSQGKKMRRKIKA----AEYLECSAKLNEGLDQVFI  190 (205)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~~~~  190 (205)
                      .....      .....++.+.+++..+.    .+++++||++|+|+.++++
T Consensus       161 ~~~~~------~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~  205 (435)
T 1jny_A          161 YDEKR------YKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE  205 (435)
T ss_dssp             TCHHH------HHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred             ccHHH------HHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence            10000      02234567777777663    4599999999999986543

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.83  E-value=2.6e-20  Score=146.52  Aligned_cols=148  Identities=13%  Similarity=0.038  Sum_probs=104.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEEEC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSI  104 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~  104 (205)
                      +|+++|.+++|||||+++|...      -.|+...   ...+......+.+||+||+++|.......+..+|++|+|+| 
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~~~------giTi~~~---~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-   92 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLGKK------GTSSDIT---MYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-   92 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTSEE------EEESSSE---EEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-
T ss_pred             EEEEECCCCCCHHHHHHHHHhC------CEEEEee---EEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-
Confidence            9999999999999999999811      1111111   12233333569999999999997776677899999999999 


Q ss_pred             CCcchHHHHHHHHHHHHhhhCCCCCE-EEEee-CcccccCchhhhhhhhhccccccHHHHHHHHHHcC--CceEEE--cc
Q psy15714        105 GSTSSYENILSKWYPELKHHCPKVPI-ILVGT-KADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIK--AAEYLE--CS  178 (205)
Q Consensus       105 ~~~~s~~~~~~~~~~~~~~~~~~~p~-ivv~n-K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~S  178 (205)
                      ++.. ..... +|+..+...  ++|. ++++| |+|+ .....          ....++.+.+.+..+  ..++++  +|
T Consensus        93 ~~g~-~~qt~-e~~~~~~~~--~i~~~ivvvNNK~Dl-~~~~~----------~~~~~~i~~~l~~~~~~~~~ii~~~~S  157 (370)
T 2elf_A           93 PQGL-DAHTG-ECIIALDLL--GFKHGIIALTRSDST-HMHAI----------DELKAKLKVITSGTVLQDWECISLNTN  157 (370)
T ss_dssp             TTCC-CHHHH-HHHHHHHHT--TCCEEEEEECCGGGS-CHHHH----------HHHHHHHHHHTTTSTTTTCEEEECCCC
T ss_pred             CCCC-cHHHH-HHHHHHHHc--CCCeEEEEEEeccCC-CHHHH----------HHHHHHHHHHHHhcCCCceEEEecccc
Confidence            5443 33333 566666655  7888 89999 9999 43210          011245555555443  346999  99


Q ss_pred             cCC---CCCHHHHHHHHHHHHH
Q psy15714        179 AKL---NEGLDQVFIAAVRSAV  197 (205)
Q Consensus       179 a~~---~~~i~~~~~~i~~~~~  197 (205)
                      |++   ++|++++++.|.+.+.
T Consensus       158 A~~~~~g~gi~~L~~~l~~~~~  179 (370)
T 2elf_A          158 KSAKNPFEGVDELKARINEVAE  179 (370)
T ss_dssp             TTSSSTTTTHHHHHHHHHHHHH
T ss_pred             cccCcCCCCHHHHHHHHHhhcc
Confidence            999   9999999999988764

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.82  E-value=7.3e-20  Score=158.49  Aligned_cols=166  Identities=14%  Similarity=0.062  Sum_probs=113.6

Q ss_pred             ccceeeEEEEECCCCCCHHHHHHHHhcC-------CCCC--CCc-----Ccccccc-ceeEEECCEEEEEEEEEcCCCcc
Q psy15714         19 SVHKALKVTTVGDGMVGKTCLLITHTEN-------KFPT--DYV-----PTVFDNY-PDTITVDNKTYDVTLWDTAGQED   83 (205)
Q Consensus        19 ~~~~~~ki~v~G~~~~GKstli~~~~~~-------~~~~--~~~-----~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~   83 (205)
                      .....++|+++|++++|||||++++.+.       .+..  ..+     .+.+... ...+.++.....+.|||+||+++
T Consensus       292 ~~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHed  371 (1289)
T 3avx_A          292 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHAD  371 (1289)
T ss_dssp             CCCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHH
T ss_pred             ccCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHH
Confidence            3456799999999999999999999863       1100  000     1111111 11233444446799999999999


Q ss_pred             cccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCC-EEEEeeCcccccCchhhhhhhhhccccccHHHH
Q psy15714         84 YERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVP-IILVGTKADLRSENKTIDKKKAAEVDLVSTSQG  162 (205)
Q Consensus        84 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  162 (205)
                      |.......+..+|++|+|+|+++....+..  +|+..+...  ++| ++|++||+|+.......         ....++.
T Consensus       372 F~~~mi~gas~AD~aILVVDAtdGv~~QTr--EhL~ll~~l--gIP~IIVVINKiDLv~d~e~l---------e~i~eEi  438 (1289)
T 3avx_A          372 YVKNMITGAAQMDGAILVVAATDGPMPQTR--EHILLGRQV--GVPYIIVFLNKCDMVDDEELL---------ELVEMEV  438 (1289)
T ss_dssp             HHHHHHHTSCCCSEEEEEEETTTCSCTTHH--HHHHHHHHH--TCSCEEEEEECCTTCCCHHHH---------HHHHHHH
T ss_pred             HHHHHHHHHhhCCEEEEEEcCCccCcHHHH--HHHHHHHHc--CCCeEEEEEeecccccchhhH---------HHHHHHH
Confidence            988888889999999999999987544332  455555555  788 79999999997532100         1233566


Q ss_pred             HHHHHHcCC----ceEEEcccCCC--------CCHHHHHHHHHHHHH
Q psy15714        163 KKMRRKIKA----AEYLECSAKLN--------EGLDQVFIAAVRSAV  197 (205)
Q Consensus       163 ~~~~~~~~~----~~~~~~Sa~~~--------~~i~~~~~~i~~~~~  197 (205)
                      ..+++..+.    .+++++||++|        .|++++|+.|.+.+.
T Consensus       439 ~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip  485 (1289)
T 3avx_A          439 RELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP  485 (1289)
T ss_dssp             HHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred             HHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence            777777663    46999999999        468899988877543

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.82  E-value=1.4e-20  Score=144.25  Aligned_cols=160  Identities=19%  Similarity=0.176  Sum_probs=100.8

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCC------CcCc-----------------------cccc------------
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTENKFPTD------YVPT-----------------------VFDN------------   59 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~------~~~t-----------------------~~~~------------   59 (205)
                      ...++|+|+|.+|+|||||++++.+..+.+.      ..|+                       ....            
T Consensus        24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i  103 (299)
T 2aka_B           24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  103 (299)
T ss_dssp             CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence            4567999999999999999999999887421      1121                       0000            


Q ss_pred             ------c-c--eeEEEC-CEEEEEEEEEcCCCc-------------ccccccccCcCCCcEEE-EEEECCCcchHHHHHH
Q psy15714         60 ------Y-P--DTITVD-NKTYDVTLWDTAGQE-------------DYERLRPMSYPNTDCFL-LCFSIGSTSSYENILS  115 (205)
Q Consensus        60 ------~-~--~~~~~~-~~~~~~~i~D~~g~~-------------~~~~~~~~~~~~~~~~i-~v~d~~~~~s~~~~~~  115 (205)
                            + .  ..+.+. .....+.+|||||..             .+......+++.++.++ +|+|+++..+..+.. 
T Consensus       104 ~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~-  182 (299)
T 2aka_B          104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL-  182 (299)
T ss_dssp             CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHH-
T ss_pred             cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHH-
Confidence                  0 0  000000 012579999999963             34445556777777666 799998765444432 


Q ss_pred             HHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHH--HHHcCCceEEEcccCCCCCHHHHHHHHH
Q psy15714        116 KWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKM--RRKIKAAEYLECSAKLNEGLDQVFIAAV  193 (205)
Q Consensus       116 ~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~Sa~~~~~i~~~~~~i~  193 (205)
                      .|+..+...  +.|+++|+||+|+.....            ...+..+..  ....+..+++++||++|.|++++|+++.
T Consensus       183 ~~~~~~~~~--~~~~i~V~NK~Dl~~~~~------------~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~  248 (299)
T 2aka_B          183 KIAKEVDPQ--GQRTIGVITKLDLMDEGT------------DARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALA  248 (299)
T ss_dssp             HHHHHHCTT--CSSEEEEEECGGGSCTTC------------CCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHH
T ss_pred             HHHHHhCCC--CCeEEEEEEccccCCCCc------------hHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHH
Confidence            355555443  799999999999976431            111111110  0011233578999999999999999987


Q ss_pred             HH
Q psy15714        194 RS  195 (205)
Q Consensus       194 ~~  195 (205)
                      +.
T Consensus       249 ~~  250 (299)
T 2aka_B          249 AE  250 (299)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.82  E-value=1.7e-19  Score=145.81  Aligned_cols=157  Identities=13%  Similarity=0.098  Sum_probs=103.3

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcC--CCCCC------------------C----c--C---cccccc-ceeEEECCEE
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTEN--KFPTD------------------Y----V--P---TVFDNY-PDTITVDNKT   70 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~--~~~~~------------------~----~--~---t~~~~~-~~~~~~~~~~   70 (205)
                      +..++|+++|.+++|||||+++|+..  .+...                  +    .  +   ..+... .....+....
T Consensus         5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~   84 (458)
T 1f60_A            5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK   84 (458)
T ss_dssp             CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred             CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCC
Confidence            45699999999999999999999864  22110                  0    0  0   001111 1111233334


Q ss_pred             EEEEEEEcCCCcccccccccCcCCCcEEEEEEECCCcc---hHH---HHHHHHHHHHhhhCCCCC-EEEEeeCcccccCc
Q psy15714         71 YDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTS---SYE---NILSKWYPELKHHCPKVP-IILVGTKADLRSEN  143 (205)
Q Consensus        71 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~  143 (205)
                      ..+.|||+||++.|.......+..+|++|+|+|+++..   +|+   ... +++..+...  ++| +++++||+|+....
T Consensus        85 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~-~~~~~~~~~--~v~~iivviNK~Dl~~~~  161 (458)
T 1f60_A           85 YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTR-EHALLAFTL--GVRQLIVAVNKMDSVKWD  161 (458)
T ss_dssp             EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHH-HHHHHHHHT--TCCEEEEEEECGGGGTTC
T ss_pred             ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHH-HHHHHHHHc--CCCeEEEEEEccccccCC
Confidence            67999999999999988888999999999999998763   221   222 233333333  676 99999999997421


Q ss_pred             hhhhhhhhhccccccHHHHHHHHHHcCC----ceEEEcccCCCCCHHHH
Q psy15714        144 KTIDKKKAAEVDLVSTSQGKKMRRKIKA----AEYLECSAKLNEGLDQV  188 (205)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~~  188 (205)
                      ...        .....++...+++..+.    .+++++||++|+|+.++
T Consensus       162 ~~~--------~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~  202 (458)
T 1f60_A          162 ESR--------FQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA  202 (458)
T ss_dssp             HHH--------HHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred             HHH--------HHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence            100        01234556667676664    45999999999998744

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.81  E-value=2.4e-19  Score=149.09  Aligned_cols=158  Identities=14%  Similarity=0.072  Sum_probs=101.7

Q ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCc------------C-----------------cccccc-ceeEEECCE
Q psy15714         20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDYV------------P-----------------TVFDNY-PDTITVDNK   69 (205)
Q Consensus        20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~------------~-----------------t~~~~~-~~~~~~~~~   69 (205)
                      ....+||+++|.+++|||||+++|+.....-...            .                 ..+... .....+...
T Consensus       164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~  243 (611)
T 3izq_1          164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH  243 (611)
T ss_dssp             CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS
T ss_pred             cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC
Confidence            4567999999999999999999998653211100            0                 001111 111122223


Q ss_pred             EEEEEEEEcCCCcccccccccCcCCCcEEEEEEECCCcc---hH---HHHHHHHHHHHhhhCCCC-CEEEEeeCcccccC
Q psy15714         70 TYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTS---SY---ENILSKWYPELKHHCPKV-PIILVGTKADLRSE  142 (205)
Q Consensus        70 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~-p~ivv~nK~Dl~~~  142 (205)
                      ...+.|||+||++.|.......+..+|++|+|+|+++..   ++   .... +.+..+...  ++ |++||+||+|+...
T Consensus       244 ~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~-e~l~~~~~l--gi~~iIVVvNKiDl~~~  320 (611)
T 3izq_1          244 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTK-EHMLLASSL--GIHNLIIAMNKMDNVDW  320 (611)
T ss_dssp             SCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHH-HHHHHHHTT--TCCEEEEEEECTTTTTT
T ss_pred             CceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHH-HHHHHHHHc--CCCeEEEEEecccccch
Confidence            367999999999999998888999999999999998742   00   0111 222223322  44 49999999999763


Q ss_pred             chhhhhhhhhccccccHHHHHHHHHHcCC----ceEEEcccCCCCCHHHH
Q psy15714        143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKA----AEYLECSAKLNEGLDQV  188 (205)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~~  188 (205)
                      +....        ....++...+....+.    .+++++||++|.|++++
T Consensus       321 ~~~~~--------~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el  362 (611)
T 3izq_1          321 SQQRF--------EEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  362 (611)
T ss_dssp             CHHHH--------HHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred             hHHHH--------HHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence            21100        1123344555555553    45999999999999876

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.81  E-value=2.4e-20  Score=151.02  Aligned_cols=159  Identities=14%  Similarity=0.091  Sum_probs=92.4

Q ss_pred             ccceeeEEEEECCCCCCHHHHHHHHhc--CCCCCC-------------------------------CcCccccccceeEE
Q psy15714         19 SVHKALKVTTVGDGMVGKTCLLITHTE--NKFPTD-------------------------------YVPTVFDNYPDTIT   65 (205)
Q Consensus        19 ~~~~~~ki~v~G~~~~GKstli~~~~~--~~~~~~-------------------------------~~~t~~~~~~~~~~   65 (205)
                      .....++|+++|+.++|||||+++|+.  +.+...                               .-.|+... ...+.
T Consensus        39 ~~k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~-~~~~~  117 (467)
T 1r5b_A           39 YGKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVG-RAYFE  117 (467)
T ss_dssp             SCCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC-----------------------------CCEEE
T ss_pred             cCCCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEee-eEEEe
Confidence            346779999999999999999999874  222100                               00011111 11233


Q ss_pred             ECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEEECCCcc---hHHH---HHHHHHHHHhhhCCCCC-EEEEeeCcc
Q psy15714         66 VDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTS---SYEN---ILSKWYPELKHHCPKVP-IILVGTKAD  138 (205)
Q Consensus        66 ~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~---~~~~~~~~~~~~~~~~p-~ivv~nK~D  138 (205)
                      .++  ..+.|||+||++.|...+...+..+|++|+|+|+++..   +|+.   .. +.+..+...  ++| ++|++||+|
T Consensus       118 ~~~--~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~-e~l~~~~~~--~vp~iivviNK~D  192 (467)
T 1r5b_A          118 TEH--RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTR-EHAVLARTQ--GINHLVVVINKMD  192 (467)
T ss_dssp             CSS--EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHH-HHHHHHHHT--TCSSEEEEEECTT
T ss_pred             cCC--eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHH-HHHHHHHHc--CCCEEEEEEECcc
Confidence            333  57999999999999988888899999999999999862   2221   11 122222233  787 999999999


Q ss_pred             cccCchhhhhhhhhccccccHHHHHHHHHHc-CC-----ceEEEcccCCCCCHHHHH
Q psy15714        139 LRSENKTIDKKKAAEVDLVSTSQGKKMRRKI-KA-----AEYLECSAKLNEGLDQVF  189 (205)
Q Consensus       139 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~Sa~~~~~i~~~~  189 (205)
                      +.........      .....++...+++.. +.     .+++++||++|+|++++|
T Consensus       193 l~~~~~~~~~------~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~  243 (467)
T 1r5b_A          193 EPSVQWSEER------YKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  243 (467)
T ss_dssp             STTCSSCHHH------HHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             CCCccccHHH------HHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence            9642210000      012334556666655 32     359999999999998765

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.81  E-value=2.6e-20  Score=154.51  Aligned_cols=158  Identities=12%  Similarity=0.050  Sum_probs=86.1

Q ss_pred             ccceeeEEEEECCCCCCHHHHHHHHhcCC--CCCCC------------------------cC---cccccc-ceeEEECC
Q psy15714         19 SVHKALKVTTVGDGMVGKTCLLITHTENK--FPTDY------------------------VP---TVFDNY-PDTITVDN   68 (205)
Q Consensus        19 ~~~~~~ki~v~G~~~~GKstli~~~~~~~--~~~~~------------------------~~---t~~~~~-~~~~~~~~   68 (205)
                      .....++|+++|.+++|||||+++|+...  +....                        .+   ..+... .....+..
T Consensus       173 ~~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~  252 (592)
T 3mca_A          173 NPKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFES  252 (592)
T ss_dssp             CCCCEEEEEEECCSSSTHHHHHHHHHHHHHCC------------------------------------------------
T ss_pred             cCCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEe
Confidence            45677899999999999999999996421  10000                        00   000111 01111222


Q ss_pred             EEEEEEEEEcCCCcccccccccCcCCCcEEEEEEECCCcc---hH--HHHHHHHHHHHhhhCCCCC-EEEEeeCcccccC
Q psy15714         69 KTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTS---SY--ENILSKWYPELKHHCPKVP-IILVGTKADLRSE  142 (205)
Q Consensus        69 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~--~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~  142 (205)
                      ....+.||||||+..|.......+..+|++|+|+|+++..   .+  .....+.+..+...  ++| ++||+||+|+...
T Consensus       253 ~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~l--gip~iIvviNKiDl~~~  330 (592)
T 3mca_A          253 DKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRAL--GISEIVVSVNKLDLMSW  330 (592)
T ss_dssp             ------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHS--SCCCEEEEEECGGGGTT
T ss_pred             CCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHc--CCCeEEEEEeccccccc
Confidence            3467999999999999998888999999999999998642   11  11111222333333  676 9999999999753


Q ss_pred             chhhhhhhhhccccccHHHHHHHH-HHcCC----ceEEEcccCCCCCHH
Q psy15714        143 NKTIDKKKAAEVDLVSTSQGKKMR-RKIKA----AEYLECSAKLNEGLD  186 (205)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~Sa~~~~~i~  186 (205)
                      .....        ....++...+. +..+.    .+++++||++|+|++
T Consensus       331 ~~~~~--------~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~  371 (592)
T 3mca_A          331 SEDRF--------QEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI  371 (592)
T ss_dssp             CHHHH--------HHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred             cHHHH--------HHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence            21100        11233444454 44454    259999999999998

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.80  E-value=2.3e-20  Score=143.19  Aligned_cols=133  Identities=16%  Similarity=0.108  Sum_probs=107.9

Q ss_pred             HHHHHHhcCCCC-CCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEEECCCcc-hHHHHHH
Q psy15714         38 CLLITHTENKFP-TDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTS-SYENILS  115 (205)
Q Consensus        38 tli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~  115 (205)
                      +|+.++..+.|. ..+.||+++.+...+..++   ++.|||+  +++|+.+++.+++++|++++|||++++. ++..+. 
T Consensus        32 sl~~~~~~~~f~~~~~~pTiGd~~~~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~-  105 (301)
T 1u0l_A           32 ERILCKLRGKFRLQNLKIYVGDRVEYTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID-  105 (301)
T ss_dssp             CEEEEEECGGGTTTTCCCCTTCEEEEECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH-
T ss_pred             cEEEEEEcccccccCCCCCCccEEEEEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH-
Confidence            688889999998 8889999976653332233   6899999  8999999999999999999999999987 677665 


Q ss_pred             HHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcC--CceEEEcccCCCCCHHHHHHHHH
Q psy15714        116 KWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIK--AAEYLECSAKLNEGLDQVFIAAV  193 (205)
Q Consensus       116 ~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~i~  193 (205)
                      .|+..+...  ++|+++|+||+|+.+.+            .+  +++..+++.+.  .. ++++||++|.|++++|..+.
T Consensus       106 ~~l~~~~~~--~~piilv~NK~DL~~~~------------~v--~~~~~~~~~~~~~~~-~~~~SAktg~gv~~lf~~l~  168 (301)
T 1u0l_A          106 KFLVLAEKN--ELETVMVINKMDLYDED------------DL--RKVRELEEIYSGLYP-IVKTSAKTGMGIEELKEYLK  168 (301)
T ss_dssp             HHHHHHHHT--TCEEEEEECCGGGCCHH------------HH--HHHHHHHHHHTTTSC-EEECCTTTCTTHHHHHHHHS
T ss_pred             HHHHHHHHC--CCCEEEEEeHHHcCCch------------hH--HHHHHHHHHHhhhCc-EEEEECCCCcCHHHHHHHhc
Confidence            898877664  89999999999997643            22  44566666665  54 99999999999999998764

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.80  E-value=4e-19  Score=133.89  Aligned_cols=119  Identities=13%  Similarity=0.176  Sum_probs=85.0

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCC--CCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCc------
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTENKF--PTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSY------   92 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~------   92 (205)
                      .+.++|+++|.+|+|||||++++++..+  ...+.+++.......+..++  ..+.||||||+..+......++      
T Consensus        34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~~  111 (262)
T 3def_A           34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALELIKGF  111 (262)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHHHHHH
Confidence            4689999999999999999999998875  33333333333334455666  4799999999988765543333      


Q ss_pred             ---CCCcEEEEEEECCCcchHHHHHHHHHHHHhhhC-C--CCCEEEEeeCcccccC
Q psy15714         93 ---PNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-P--KVPIILVGTKADLRSE  142 (205)
Q Consensus        93 ---~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~--~~p~ivv~nK~Dl~~~  142 (205)
                         ..+|++++|++++... +......|+..+.... .  ..|+++|+||+|+...
T Consensus       112 l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~  166 (262)
T 3def_A          112 LVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPP  166 (262)
T ss_dssp             TTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCS
T ss_pred             HhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCC
Confidence               2789999999987654 4444336777776643 2  2499999999998643

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.79  E-value=1.4e-18  Score=146.04  Aligned_cols=117  Identities=18%  Similarity=0.080  Sum_probs=84.0

Q ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcc----------------cccc-ceeEEECCEEEEEEEEEcCCCc
Q psy15714         20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV----------------FDNY-PDTITVDNKTYDVTLWDTAGQE   82 (205)
Q Consensus        20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~----------------~~~~-~~~~~~~~~~~~~~i~D~~g~~   82 (205)
                      ..+..+|+++|+.|+|||||++++...........++                +..+ .....+....+.++|||+||+.
T Consensus         6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~   85 (665)
T 2dy1_A            6 GAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYG   85 (665)
T ss_dssp             CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSG
T ss_pred             cCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCcc
Confidence            3456799999999999999999998533221111110                1111 2222333334789999999999


Q ss_pred             ccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccc
Q psy15714         83 DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLR  140 (205)
Q Consensus        83 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  140 (205)
                      .|.......++.+|++++|+|+++.......  .++..+...  ++|+++++||+|+.
T Consensus        86 ~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~--~~~~~~~~~--~ip~ilv~NKiD~~  139 (665)
T 2dy1_A           86 DFVGEIRGALEAADAALVAVSAEAGVQVGTE--RAWTVAERL--GLPRMVVVTKLDKG  139 (665)
T ss_dssp             GGHHHHHHHHHHCSEEEEEEETTTCSCHHHH--HHHHHHHHT--TCCEEEEEECGGGC
T ss_pred             chHHHHHHHHhhcCcEEEEEcCCcccchhHH--HHHHHHHHc--cCCEEEEecCCchh
Confidence            9988888889999999999999887654443  455555554  89999999999997

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.78  E-value=1.7e-18  Score=135.46  Aligned_cols=133  Identities=18%  Similarity=0.168  Sum_probs=90.8

Q ss_pred             EEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEEECCC----------cchHHHHHHHHHHHHhhh--CCCCCEE
Q psy15714         64 ITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGS----------TSSYENILSKWYPELKHH--CPKVPII  131 (205)
Q Consensus        64 ~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~--~~~~p~i  131 (205)
                      +.+++  +.+.+||++|++.++..|..++++++++|||||+++          ..++.+.. .|...+...  ..++|++
T Consensus       196 ~~~~~--~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~-~~~~~i~~~~~~~~~piI  272 (362)
T 1zcb_A          196 FEIKN--VPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESL-NIFETIVNNRVFSNVSII  272 (362)
T ss_dssp             EEETT--EEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHH-HHHHHHHTCGGGTTSEEE
T ss_pred             eeeCC--eEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHH-HHHHHHhcchhhCCCCEE
Confidence            34444  789999999999999999999999999999999999          78899887 455555432  3689999


Q ss_pred             EEeeCcccccCchhh-hhhh---hhccccccHHHHHHHHH-----------HcCCceEEEcccCCCCCHHHHHHHHHHHH
Q psy15714        132 LVGTKADLRSENKTI-DKKK---AAEVDLVSTSQGKKMRR-----------KIKAAEYLECSAKLNEGLDQVFIAAVRSA  196 (205)
Q Consensus       132 vv~nK~Dl~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~  196 (205)
                      +++||+|+....... ....   ......++.+++..++.           ..+ ..+++|||+++.||+++|.++.+.+
T Consensus       273 Lv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~-~~~~~tSA~d~~nV~~vF~~v~~~i  351 (362)
T 1zcb_A          273 LFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRP-LYHHFTTAINTENIRLVFRDVKDTI  351 (362)
T ss_dssp             EEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--C-CEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             EEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCc-eEEEEEecCCchhHHHHHHHHHHHH
Confidence            999999996432100 0000   00011256677777652           223 3489999999999999999999988


Q ss_pred             Hhhc
Q psy15714        197 VKKQ  200 (205)
Q Consensus       197 ~~~~  200 (205)
                      ....
T Consensus       352 ~~~~  355 (362)
T 1zcb_A          352 LHDN  355 (362)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7654

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.78  E-value=6.9e-20  Score=140.50  Aligned_cols=164  Identities=16%  Similarity=0.103  Sum_probs=87.1

Q ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcC-CCCCCC--------cCcccccc-ceeEEECCEEEEEEEEEcCCC-------c
Q psy15714         20 VHKALKVTTVGDGMVGKTCLLITHTEN-KFPTDY--------VPTVFDNY-PDTITVDNKTYDVTLWDTAGQ-------E   82 (205)
Q Consensus        20 ~~~~~ki~v~G~~~~GKstli~~~~~~-~~~~~~--------~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~-------~   82 (205)
                      ....++|+++|++|+|||||++++.+. .++...        .++..... ......++....+++||++|.       +
T Consensus        15 ~~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e   94 (301)
T 2qnr_A           15 KGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRD   94 (301)
T ss_dssp             ---CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC----------
T ss_pred             cCCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHH
Confidence            345689999999999999999998765 443322        11211111 112222445578999999997       4


Q ss_pred             ccccccc-------cC-----------cCC--CcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccC
Q psy15714         83 DYERLRP-------MS-----------YPN--TDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSE  142 (205)
Q Consensus        83 ~~~~~~~-------~~-----------~~~--~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  142 (205)
                      .++.+..       .+           +..  +++++|+.+.+. .+++.....+   +.....++|+++|+||.|+...
T Consensus        95 ~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~~~---l~~l~~~~~iilV~~K~Dl~~~  170 (301)
T 2qnr_A           95 CFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDVAF---MKAIHNKVNIVPVIAKADTLTL  170 (301)
T ss_dssp             -CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHHHH---HHHHTTTSCEEEEECCGGGSCH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHHHH---HHHHHhcCCEEEEEEeCCCCCH
Confidence            4443322       11           112  233444444322 2344432233   3333457899999999999764


Q ss_pred             chhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCCCCCHHHHHHHHHHHHHhh
Q psy15714        143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKK  199 (205)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  199 (205)
                      +..          ....+++.++++..++. ++++||+++ |++++|.++.+.+...
T Consensus       171 ~e~----------~~~~~~~~~~~~~~~~~-~~e~Sa~~~-~v~e~f~~l~~~i~~~  215 (301)
T 2qnr_A          171 KER----------ERLKKRILDEIEEHNIK-IYHLPDAES-DEDEDFKEQTRLLKAS  215 (301)
T ss_dssp             HHH----------HHHHHHHHHHHHHTTCC-CCCCC----------CHHHHHHHHTT
T ss_pred             HHH----------HHHHHHHHHHHHHcCCe-EEecCCccc-cccHHHHHHHHHhhcC
Confidence            311          23456788888998876 999999999 9999999999988654

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.77  E-value=3.5e-18  Score=139.92  Aligned_cols=120  Identities=17%  Similarity=0.132  Sum_probs=81.5

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcC--CCCC-----------CC-------cCcccccc-ceeEEECCEEEEEEEEEcC
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTEN--KFPT-----------DY-------VPTVFDNY-PDTITVDNKTYDVTLWDTA   79 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~--~~~~-----------~~-------~~t~~~~~-~~~~~~~~~~~~~~i~D~~   79 (205)
                      .+..+|+++|++|+|||||++++...  .+..           ..       ..+.+... .....+....+.+.|||||
T Consensus        11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP   90 (529)
T 2h5e_A           11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP   90 (529)
T ss_dssp             HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred             cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence            45689999999999999999999863  2100           00       00111111 1122222233679999999


Q ss_pred             CCcccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCch
Q psy15714         80 GQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENK  144 (205)
Q Consensus        80 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~  144 (205)
                      |+..|......++..+|++|+|+|+++.......  .++..+...  ++|+++++||+|+.....
T Consensus        91 G~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t~--~~~~~~~~~--~ipiivviNK~Dl~~~~~  151 (529)
T 2h5e_A           91 GHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTR--KLMEVTRLR--DTPILTFMNKLDRDIRDP  151 (529)
T ss_dssp             CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHH--HHHHHHTTT--TCCEEEEEECTTSCCSCH
T ss_pred             CChhHHHHHHHHHHHCCEEEEEEeCCccchHHHH--HHHHHHHHc--CCCEEEEEcCcCCccccH
Confidence            9999988777789999999999999987543332  344444444  899999999999976543

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.77  E-value=2.6e-18  Score=145.04  Aligned_cols=175  Identities=12%  Similarity=0.092  Sum_probs=107.7

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCC-CCcCccc--------cccceeEEE-------------------------
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTENKFPT-DYVPTVF--------DNYPDTITV-------------------------   66 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~-~~~~t~~--------~~~~~~~~~-------------------------   66 (205)
                      ...++|+|+|.+|+|||||+|+|.+..+.+ ...+++.        ........+                         
T Consensus        67 ~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~  146 (695)
T 2j69_A           67 QGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEA  146 (695)
T ss_dssp             HCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHH
Confidence            467999999999999999999999876532 2222220        000001100                         


Q ss_pred             ---------------------CCEE--EEEEEEEcCCCcc---cccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHH
Q psy15714         67 ---------------------DNKT--YDVTLWDTAGQED---YERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPE  120 (205)
Q Consensus        67 ---------------------~~~~--~~~~i~D~~g~~~---~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~  120 (205)
                                           +...  ..+.||||||...   .......+++.+|++++|+|+++..+..+.. .|...
T Consensus       147 ~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~-~l~~~  225 (695)
T 2j69_A          147 KKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERR-YLENY  225 (695)
T ss_dssp             HHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHH-HHHHH
T ss_pred             HHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHH-HHHHH
Confidence                                 0000  2589999999654   2344556788999999999999888777764 56555


Q ss_pred             HhhhCCCCCEEEEeeCcccccCchhhhh--hhhhcc-ccccHHHHHHHHHHcC-------CceEEEcccC----------
Q psy15714        121 LKHHCPKVPIILVGTKADLRSENKTIDK--KKAAEV-DLVSTSQGKKMRRKIK-------AAEYLECSAK----------  180 (205)
Q Consensus       121 ~~~~~~~~p~ivv~nK~Dl~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~-------~~~~~~~Sa~----------  180 (205)
                      +...  +.|+++|+||+|+.........  ...... ..+.......+....+       ..+++++||+          
T Consensus       226 l~~~--~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~  303 (695)
T 2j69_A          226 IKGR--GLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNP  303 (695)
T ss_dssp             TTTS--CCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCT
T ss_pred             HHhh--CCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCc
Confidence            5544  7899999999998754200000  000000 0000000011111111       1248999999          


Q ss_pred             ----CCCCHHHHHHHHHHHHHh
Q psy15714        181 ----LNEGLDQVFIAAVRSAVK  198 (205)
Q Consensus       181 ----~~~~i~~~~~~i~~~~~~  198 (205)
                          ++.|+++++..+.+.+..
T Consensus       304 ~~~~~~~Gi~~L~~~L~~~l~~  325 (695)
T 2j69_A          304 QADLDGTGFPKFMDSLNTFLTR  325 (695)
T ss_dssp             TCCCTTSSHHHHHHHHHHHHHH
T ss_pred             hhhhhccCHHHHHHHHHHHHHH
Confidence                999999999999887654

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.77  E-value=3.7e-18  Score=129.12  Aligned_cols=120  Identities=13%  Similarity=0.134  Sum_probs=82.3

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCC--CCCcCccccccceeEEECCEEEEEEEEEcCCCccccccccc--------
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTENKFP--TDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPM--------   90 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~--------   90 (205)
                      ...++|+++|.+|+|||||++++++..+.  ..+.+++.......+..++  ..+.||||||...+......        
T Consensus        37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~iiDTpG~~~~~~~~~~~~~~i~~~  114 (270)
T 1h65_A           37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYINDMALNIIKSF  114 (270)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCC--eEEEEEECCCCCCCccchHHHHHHHHHH
Confidence            45799999999999999999999988753  2222222222222333344  67999999998776533221        


Q ss_pred             -CcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhC-CC--CCEEEEeeCcccccCc
Q psy15714         91 -SYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PK--VPIILVGTKADLRSEN  143 (205)
Q Consensus        91 -~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~--~p~ivv~nK~Dl~~~~  143 (205)
                       ..+.+|++++|+|++.. ++......|+..+.... .+  .|+++|+||+|+...+
T Consensus       115 ~~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~  170 (270)
T 1h65_A          115 LLDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD  170 (270)
T ss_dssp             TTTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred             hhcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcC
Confidence             23479999999998753 34444346777776543 22  7999999999986543

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.75  E-value=2.9e-18  Score=136.36  Aligned_cols=161  Identities=17%  Similarity=0.110  Sum_probs=86.5

Q ss_pred             ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCc--------Ccccccc-ceeEEECCEEEEEEEEEcCCCcccc----
Q psy15714         19 SVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYV--------PTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYE----   85 (205)
Q Consensus        19 ~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~--------~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~----   85 (205)
                      -..-.++|+|+|++|+|||||++.+.+..+.....        ++..... ...+...+....+++||++|...+.    
T Consensus        27 l~~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~  106 (418)
T 2qag_C           27 KRGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSN  106 (418)
T ss_dssp             C-CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC----------
T ss_pred             ecCCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchh
Confidence            34566899999999999999999999877632211        1111110 1112223444579999999975431    


Q ss_pred             ---c------------------ccccCcCCCcEEEEEEECCCc-chHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCc
Q psy15714         86 ---R------------------LRPMSYPNTDCFLLCFSIGST-SSYENILSKWYPELKHHCPKVPIILVGTKADLRSEN  143 (205)
Q Consensus        86 ---~------------------~~~~~~~~~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~  143 (205)
                         .                  +.+.++.++++.+++|+.+.- .++......|+..+.   .++|+|+|+||+|+...+
T Consensus       107 ~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~---~~v~iIlVinK~Dll~~~  183 (418)
T 2qag_C          107 CWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH---EKVNIIPLIAKADTLTPE  183 (418)
T ss_dssp             -CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT---TTSEEEEEEESTTSSCHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh---ccCcEEEEEEcccCccHH
Confidence               1                  224456667766666665543 345444335766664   379999999999987644


Q ss_pred             hhhhhhhhhcccccc--HHHHHHHHHHcCCceEEEcccCCCCCHHHHHHHHHHH
Q psy15714        144 KTIDKKKAAEVDLVS--TSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRS  195 (205)
Q Consensus       144 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  195 (205)
                                  .+.  .+++...+...++. ++++||.++.+++++|..+.+.
T Consensus       184 ------------ev~~~k~~i~~~~~~~~i~-~~~~sa~~~~~v~~~~~~l~~~  224 (418)
T 2qag_C          184 ------------ECQQFKKQIMKEIQEHKIK-IYEFPETDDEEENKLVKKIKDR  224 (418)
T ss_dssp             ------------HHHHHHHHHHHHHHHHTCC-CCCCC-----------------
T ss_pred             ------------HHHHHHHHHHHHHHHcCCe-EEeCCCCCCcCHHHHHHHHHhh
Confidence                        333  36677788888877 8999999999999988877654

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.75  E-value=8.3e-18  Score=133.64  Aligned_cols=159  Identities=19%  Similarity=0.126  Sum_probs=106.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCC-CCCcCccccccceeEEECCEEEEEEEEEcCCCccc----cccccc---CcCCC
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTENKFP-TDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY----ERLRPM---SYPNT   95 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~----~~~~~~---~~~~~   95 (205)
                      -.|+++|++|||||||++++.+.... ..+..++.......+..++ ...+.+||+||....    ..+...   .+..+
T Consensus       158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era  236 (416)
T 1udx_A          158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIART  236 (416)
T ss_dssp             CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHH
Confidence            35799999999999999999876431 1222222111112233333 246899999997432    112111   24568


Q ss_pred             cEEEEEEECCCcchHHHHHHHHHHHHhhhC---CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCc
Q psy15714         96 DCFLLCFSIGSTSSYENILSKWYPELKHHC---PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAA  172 (205)
Q Consensus        96 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (205)
                      +.++.++|++ ...+.++. .|...+..+.   .+.|.++|+||+|+....              ..++.....+..+..
T Consensus       237 ~~lL~vvDls-~~~~~~ls-~g~~el~~la~aL~~~P~ILVlNKlDl~~~~--------------~~~~l~~~l~~~g~~  300 (416)
T 1udx_A          237 RVLLYVLDAA-DEPLKTLE-TLRKEVGAYDPALLRRPSLVALNKVDLLEEE--------------AVKALADALAREGLA  300 (416)
T ss_dssp             SEEEEEEETT-SCHHHHHH-HHHHHHHHHCHHHHHSCEEEEEECCTTSCHH--------------HHHHHHHHHHTTTSC
T ss_pred             HhhhEEeCCc-cCCHHHHH-HHHHHHHHHhHHhhcCCEEEEEECCChhhHH--------------HHHHHHHHHHhcCCe
Confidence            9999999998 56666665 6766666554   378999999999986531              122333444444555


Q ss_pred             eEEEcccCCCCCHHHHHHHHHHHHHhhc
Q psy15714        173 EYLECSAKLNEGLDQVFIAAVRSAVKKQ  200 (205)
Q Consensus       173 ~~~~~Sa~~~~~i~~~~~~i~~~~~~~~  200 (205)
                       ++.+||++++|+++++++|.+.+....
T Consensus       301 -vi~iSA~~g~gi~eL~~~i~~~l~~~~  327 (416)
T 1udx_A          301 -VLPVSALTGAGLPALKEALHALVRSTP  327 (416)
T ss_dssp             -EEECCTTTCTTHHHHHHHHHHHHHTSC
T ss_pred             -EEEEECCCccCHHHHHHHHHHHHHhcc
Confidence             999999999999999999999887643

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.75  E-value=2.6e-17  Score=138.84  Aligned_cols=117  Identities=16%  Similarity=0.139  Sum_probs=84.1

Q ss_pred             cceeeEEEEECCCCCCHHHHHHHHhc--CCCC------C------------CCcCccccccceeEEECCEEEEEEEEEcC
Q psy15714         20 VHKALKVTTVGDGMVGKTCLLITHTE--NKFP------T------------DYVPTVFDNYPDTITVDNKTYDVTLWDTA   79 (205)
Q Consensus        20 ~~~~~ki~v~G~~~~GKstli~~~~~--~~~~------~------------~~~~t~~~~~~~~~~~~~~~~~~~i~D~~   79 (205)
                      ..+..+|+|+|.+|+|||||++++..  +.+.      .            ....|+... ...+..++  +.+.|||||
T Consensus         9 ~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~-~~~~~~~~--~~i~liDTP   85 (691)
T 1dar_A            9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAA-VTTCFWKD--HRINIIDTP   85 (691)
T ss_dssp             GGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CC-EEEEEETT--EEEEEECCC
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccc-eEEEEECC--eEEEEEECc
Confidence            45678999999999999999999984  2211      0            001111111 11223333  679999999


Q ss_pred             CCcccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCc
Q psy15714         80 GQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSEN  143 (205)
Q Consensus        80 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~  143 (205)
                      |+..|.......++.+|++|+|+|+++..+..... .|. .+...  ++|+++|+||+|+....
T Consensus        86 G~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~-~~~-~~~~~--~~p~ivviNKiD~~~~~  145 (691)
T 1dar_A           86 GHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSET-VWR-QAEKY--KVPRIAFANKMDKTGAD  145 (691)
T ss_dssp             SSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHH-HHH-HHHHT--TCCEEEEEECTTSTTCC
T ss_pred             CccchHHHHHHHHHHCCEEEEEEECCCCcchhhHH-HHH-HHHHc--CCCEEEEEECCCcccCC
Confidence            99999888888899999999999999988777654 454 34444  89999999999997653

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.73  E-value=1.7e-18  Score=136.06  Aligned_cols=155  Identities=15%  Similarity=0.126  Sum_probs=98.4

Q ss_pred             eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccc------------------------------------------
Q psy15714         22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDN------------------------------------------   59 (205)
Q Consensus        22 ~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~------------------------------------------   59 (205)
                      ...+|+|+|++|+|||||++++.+..+.+....+....                                          
T Consensus        33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~  112 (360)
T 3t34_A           33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD  112 (360)
T ss_dssp             CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred             cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence            33499999999999999999999987633322211000                                          


Q ss_pred             --------c---ceeEEE-CCEEEEEEEEEcCCCccc-------------ccccccCcCCCcEEEEEEECCCcchHHHHH
Q psy15714         60 --------Y---PDTITV-DNKTYDVTLWDTAGQEDY-------------ERLRPMSYPNTDCFLLCFSIGSTSSYENIL  114 (205)
Q Consensus        60 --------~---~~~~~~-~~~~~~~~i~D~~g~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~  114 (205)
                              +   ...+.+ ......+.+||+||...+             ......+++.+|++++|+|..+......  
T Consensus       113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~--  190 (360)
T 3t34_A          113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATS--  190 (360)
T ss_dssp             HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGC--
T ss_pred             HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCH--
Confidence                    0   000110 011235899999998765             4455677899999999998765433221  


Q ss_pred             HHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCCCCCHHHHHHHH
Q psy15714        115 SKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAA  192 (205)
Q Consensus       115 ~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i  192 (205)
                       .|+..+.... .+.|+++|+||+|+....            ....+....+...++.. |+++|+..+.++++.+...
T Consensus       191 -~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~-~~~v~~~s~~~i~~~~~~~  255 (360)
T 3t34_A          191 -DAIKISREVDPSGDRTFGVLTKIDLMDKG------------TDAVEILEGRSFKLKYP-WVGVVNRSQADINKNVDMI  255 (360)
T ss_dssp             -HHHHHHHHSCTTCTTEEEEEECGGGCCTT------------CCSHHHHTTSSSCCSSC-CEEECCCCHHHHHTTCCHH
T ss_pred             -HHHHHHHHhcccCCCEEEEEeCCccCCCc------------ccHHHHHcCccccccCC-eEEEEECChHHhccCCCHH
Confidence             3444444443 478999999999998653            22223333333344444 8888888888877665443

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.73  E-value=8.6e-17  Score=135.74  Aligned_cols=118  Identities=17%  Similarity=0.102  Sum_probs=84.2

Q ss_pred             cceeeEEEEECCCCCCHHHHHHHHhc--CCCCCC-----------CcC---cccccc---ceeEEECCEEEEEEEEEcCC
Q psy15714         20 VHKALKVTTVGDGMVGKTCLLITHTE--NKFPTD-----------YVP---TVFDNY---PDTITVDNKTYDVTLWDTAG   80 (205)
Q Consensus        20 ~~~~~ki~v~G~~~~GKstli~~~~~--~~~~~~-----------~~~---t~~~~~---~~~~~~~~~~~~~~i~D~~g   80 (205)
                      ..+..+|+++|.+|+|||||++++..  +.+...           +.+   ..+...   ...+..++  +.+.||||||
T Consensus         7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG   84 (693)
T 2xex_A            7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEG--HRVNIIDTPG   84 (693)
T ss_dssp             STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETT--EEEEEECCCC
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECC--eeEEEEECcC
Confidence            34568999999999999999999985  332110           000   000011   11233444  6799999999


Q ss_pred             CcccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCc
Q psy15714         81 QEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSEN  143 (205)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~  143 (205)
                      +..|.......++.+|++|+|+|+++..+..... .|. .+...  ++|+++|+||+|+....
T Consensus        85 ~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~-~~~-~~~~~--~~p~ilviNK~Dl~~~~  143 (693)
T 2xex_A           85 HVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTET-VWR-QATTY--GVPRIVFVNKMDKLGAN  143 (693)
T ss_dssp             CSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHH-HHH-HHHHT--TCCEEEEEECTTSTTCC
T ss_pred             CcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHH-HHH-HHHHc--CCCEEEEEECCCccccc
Confidence            9998888788889999999999999987777653 443 45444  89999999999997653

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.73  E-value=1.9e-18  Score=133.40  Aligned_cols=112  Identities=13%  Similarity=0.100  Sum_probs=67.1

Q ss_pred             EEEEEEEcCCCcc-------------cccccccCcCCCcEEEEEEECCCcc-hHHHHHHHHHHHHhhhCCCCCEEEEeeC
Q psy15714         71 YDVTLWDTAGQED-------------YERLRPMSYPNTDCFLLCFSIGSTS-SYENILSKWYPELKHHCPKVPIILVGTK  136 (205)
Q Consensus        71 ~~~~i~D~~g~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK  136 (205)
                      ..+.+|||||...             +......++..+|++++|+|+.+.. ...... .+...+..  .+.|+++|+||
T Consensus       131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~-~i~~~~~~--~~~~~i~v~NK  207 (315)
T 1jwy_B          131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDAL-QLAKEVDP--EGKRTIGVITK  207 (315)
T ss_dssp             CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHH-HHHHHHCS--SCSSEEEEEEC
T ss_pred             CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHH-HHHHHhCC--CCCcEEEEEcC
Confidence            4699999999753             3344556788999999999974432 111111 33344433  38999999999


Q ss_pred             cccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEccc---CC---CCCHHHHHHHHHHHHHh
Q psy15714        137 ADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSA---KL---NEGLDQVFIAAVRSAVK  198 (205)
Q Consensus       137 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa---~~---~~~i~~~~~~i~~~~~~  198 (205)
                      +|+.....            ...+.........+. .++++|+   .+   +.|++++++.+.+.+..
T Consensus       208 ~Dl~~~~~------------~~~~~~~~~~~~~~~-~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~  262 (315)
T 1jwy_B          208 LDLMDKGT------------DAMEVLTGRVIPLTL-GFIGVINRSQEDIIAKKSIRESLKSEILYFKN  262 (315)
T ss_dssp             TTSSCSSC------------CCHHHHTTSSSCCTT-CEEECCCCCHHHHSSSCCHHHHHHHHHHHHHT
T ss_pred             cccCCcch------------HHHHHHhCCCccCCC-CeEEEecCChhhhccCCCHHHHHHHHHHHHhC
Confidence            99976431            111111110011112 2555554   44   78899999988776644

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.72  E-value=1.2e-16  Score=134.94  Aligned_cols=120  Identities=15%  Similarity=0.056  Sum_probs=83.1

Q ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcC--CCCCC-----------CcC---cccccc-c--eeEEE-----CCEEEEEEE
Q psy15714         20 VHKALKVTTVGDGMVGKTCLLITHTEN--KFPTD-----------YVP---TVFDNY-P--DTITV-----DNKTYDVTL   75 (205)
Q Consensus        20 ~~~~~ki~v~G~~~~GKstli~~~~~~--~~~~~-----------~~~---t~~~~~-~--~~~~~-----~~~~~~~~i   75 (205)
                      ..+..+|+|+|..|+|||||++++...  .+...           +.+   ..+... .  ..+..     ++..+.+.|
T Consensus         7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~l   86 (704)
T 2rdo_7            7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINI   86 (704)
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEE
Confidence            345689999999999999999999742  22110           000   000000 0  11222     223478999


Q ss_pred             EEcCCCcccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCc
Q psy15714         76 WDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSEN  143 (205)
Q Consensus        76 ~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~  143 (205)
                      |||||+.+|.......++.+|++|+|+|+++..+..... .| ..+...  ++|+++|+||+|+...+
T Consensus        87 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~-~~-~~~~~~--~ip~ilviNKiD~~~~~  150 (704)
T 2rdo_7           87 IDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSET-VW-RQANKY--KVPRIAFVNKMDRMGAN  150 (704)
T ss_pred             EeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHH-HH-HHHHHc--CCCEEEEEeCCCccccc
Confidence            999999999888888899999999999999886655543 34 333333  89999999999987653

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.70  E-value=7.5e-17  Score=127.81  Aligned_cols=84  Identities=15%  Similarity=0.145  Sum_probs=47.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCC-CCCcCcccccccee---------------------EEECC-EEEEEEEEEcCC
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTENKFP-TDYVPTVFDNYPDT---------------------ITVDN-KTYDVTLWDTAG   80 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~~~~-~~~~~t~~~~~~~~---------------------~~~~~-~~~~~~i~D~~g   80 (205)
                      ++|+++|.+++|||||++++++.... ..+..++.......                     ..+++ ...++.+||+||
T Consensus         1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG   80 (397)
T 1wxq_A            1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (397)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence            58999999999999999999987632 23322222111111                     11233 257899999999


Q ss_pred             Ccc----cccccc---cCcCCCcEEEEEEECCCc
Q psy15714         81 QED----YERLRP---MSYPNTDCFLLCFSIGST  107 (205)
Q Consensus        81 ~~~----~~~~~~---~~~~~~~~~i~v~d~~~~  107 (205)
                      ...    .+.+..   ..++.+|++++|+|+++.
T Consensus        81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~  114 (397)
T 1wxq_A           81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK  114 (397)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTCC
T ss_pred             cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence            753    222322   457899999999999875

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=99.69  E-value=7.8e-17  Score=118.14  Aligned_cols=155  Identities=14%  Similarity=0.067  Sum_probs=94.7

Q ss_pred             eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-------------ceeEEECC------------------EE
Q psy15714         22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-------------PDTITVDN------------------KT   70 (205)
Q Consensus        22 ~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-------------~~~~~~~~------------------~~   70 (205)
                      +..+|+++|.+|+|||||++++............+....             ...+.++.                  ..
T Consensus        29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (221)
T 2wsm_A           29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD  108 (221)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence            457999999999999999999886522111111000000             00011111                  23


Q ss_pred             EEEEEEEcCCCcccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhh
Q psy15714         71 YDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKK  150 (205)
Q Consensus        71 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~  150 (205)
                      +.+.+||++|+.....   .+....+.+++|+|+++....  .. .+..   ..  +.|+++|+||+|+....       
T Consensus       109 ~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~~--~~-~~~~---~~--~~~~iiv~NK~Dl~~~~-------  170 (221)
T 2wsm_A          109 CDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDDV--VE-KHPE---IF--RVADLIVINKVALAEAV-------  170 (221)
T ss_dssp             CSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTTH--HH-HCHH---HH--HTCSEEEEECGGGHHHH-------
T ss_pred             CCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcchh--hh-hhhh---hh--hcCCEEEEecccCCcch-------
Confidence            5688999999521111   111256889999998765421  11 1111   12  58999999999986432       


Q ss_pred             hhccccccHHHHHHHHHHcC-CceEEEcccCCCCCHHHHHHHHHHHHHhh
Q psy15714        151 AAEVDLVSTSQGKKMRRKIK-AAEYLECSAKLNEGLDQVFIAAVRSAVKK  199 (205)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  199 (205)
                           ....++.....+..+ ..+++++||++|.|++++|+++.+.+...
T Consensus       171 -----~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~  215 (221)
T 2wsm_A          171 -----GADVEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVH  215 (221)
T ss_dssp             -----TCCHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC--
T ss_pred             -----hhHHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHH
Confidence                 233445555555443 34599999999999999999999887654

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.68  E-value=4e-18  Score=133.64  Aligned_cols=159  Identities=19%  Similarity=0.137  Sum_probs=93.0

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCC------cCc-----------------------ccc-------------
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDY------VPT-----------------------VFD-------------   58 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~------~~t-----------------------~~~-------------   58 (205)
                      ....+|+|+|.+++|||||++++.+..+.+..      .|+                       ...             
T Consensus        29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i  108 (353)
T 2x2e_A           29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  108 (353)
T ss_dssp             CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence            45679999999999999999999998874221      121                       000             


Q ss_pred             -----cc---ceeEEEC-CEEEEEEEEEcCCCc-------------ccccccccCcCCC-cEEEEEEECCCcchHHHHHH
Q psy15714         59 -----NY---PDTITVD-NKTYDVTLWDTAGQE-------------DYERLRPMSYPNT-DCFLLCFSIGSTSSYENILS  115 (205)
Q Consensus        59 -----~~---~~~~~~~-~~~~~~~i~D~~g~~-------------~~~~~~~~~~~~~-~~~i~v~d~~~~~s~~~~~~  115 (205)
                           .+   ...+.+. .....+.||||||..             .++.+...++... +++++|.|++....-.+.. 
T Consensus       109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~-  187 (353)
T 2x2e_A          109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL-  187 (353)
T ss_dssp             HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHH-
T ss_pred             cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHH-
Confidence                 00   0001111 112569999999953             2334444555555 4555566665432212221 


Q ss_pred             HHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHH--HHHHHcCCceEEEcccCCCCCHHHHHHHHH
Q psy15714        116 KWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGK--KMRRKIKAAEYLECSAKLNEGLDQVFIAAV  193 (205)
Q Consensus       116 ~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~  193 (205)
                      .++..+..  .+.|+++|+||+|+......            ..+..+  .+....+..+++.+||+++.|++++++++.
T Consensus       188 ~i~~~~~~--~~~~~i~V~NK~Dl~~~~~~------------~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~  253 (353)
T 2x2e_A          188 KVAKEVDP--QGQRTIGVITKLDLMDEGTD------------ARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALA  253 (353)
T ss_dssp             HHHHHHCT--TCTTEEEEEECGGGSCTTCC------------CHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHH
T ss_pred             HHHHHhCc--CCCceEEEeccccccCcchh------------HHHHHhCCcccccCCceEEEeCCcccccccccHHHHHH
Confidence            23333333  37999999999999764310            000000  001112334478899999999999999887


Q ss_pred             H
Q psy15714        194 R  194 (205)
Q Consensus       194 ~  194 (205)
                      +
T Consensus       254 ~  254 (353)
T 2x2e_A          254 A  254 (353)
T ss_dssp             H
T ss_pred             H
Confidence            6

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=99.66  E-value=2.7e-18  Score=126.38  Aligned_cols=155  Identities=18%  Similarity=0.118  Sum_probs=92.2

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccc-------------eeEEEC-CEE----------------
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYP-------------DTITVD-NKT----------------   70 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~-------------~~~~~~-~~~----------------   70 (205)
                      .+..+|+++|.+|+|||||++++....+...+.+++...+.             ..+.++ +..                
T Consensus        36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~  115 (226)
T 2hf9_A           36 HGVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLN  115 (226)
T ss_dssp             TTCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSC
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHh
Confidence            35689999999999999999999987655444444433321             122221 111                


Q ss_pred             ---EEEEEEEcCCCcccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhh
Q psy15714         71 ---YDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTID  147 (205)
Q Consensus        71 ---~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~  147 (205)
                         ..+.+.|++|.-....   .+-...+.++.+.|+........   .....   .  +.|.++|+||+|+....    
T Consensus       116 ~~~~d~~~id~~g~i~~~~---s~~~~~~~~~~v~~~~~~~~~~~---~~~~~---~--~~~~iiv~NK~Dl~~~~----  180 (226)
T 2hf9_A          116 LDEIDLLFIENVGNLICPA---DFDLGTHKRIVVISTTEGDDTIE---KHPGI---M--KTADLIVINKIDLADAV----  180 (226)
T ss_dssp             GGGCSEEEEECCSCSSGGG---GCCCSCSEEEEEEEGGGCTTTTT---TCHHH---H--TTCSEEEEECGGGHHHH----
T ss_pred             cCCCCEEEEeCCCCccCcc---hhhhccCcEEEEEecCcchhhHh---hhhhH---h--hcCCEEEEeccccCchh----
Confidence               1344455555211111   11122344556666432211110   00111   1  57889999999986532    


Q ss_pred             hhhhhccccccHHHHHHHHHHcC-CceEEEcccCCCCCHHHHHHHHHHHHHh
Q psy15714        148 KKKAAEVDLVSTSQGKKMRRKIK-AAEYLECSAKLNEGLDQVFIAAVRSAVK  198 (205)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  198 (205)
                              ....++...+++..+ ..+++++||++|.|++++|+++.+.+..
T Consensus       181 --------~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~  224 (226)
T 2hf9_A          181 --------GADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE  224 (226)
T ss_dssp             --------TCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             --------HHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence                    245566666666543 3459999999999999999999887754

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.64  E-value=1.5e-16  Score=124.64  Aligned_cols=107  Identities=21%  Similarity=0.186  Sum_probs=69.5

Q ss_pred             EEEEEEEcCCCcccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhh
Q psy15714         71 YDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKK  150 (205)
Q Consensus        71 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~  150 (205)
                      +.+.||||||.....   ...+..+|++++|+|.+.......+.        ....+.|+++|+||+|+......     
T Consensus       172 ~~~iiiDTpGi~~~~---~~~~~~aD~vl~V~d~~~~~~~~~l~--------~~~~~~p~ivVlNK~Dl~~~~~~-----  235 (355)
T 3p32_A          172 FDVILIETVGVGQSE---VAVANMVDTFVLLTLARTGDQLQGIK--------KGVLELADIVVVNKADGEHHKEA-----  235 (355)
T ss_dssp             CCEEEEEECSCSSHH---HHHHTTCSEEEEEEESSTTCTTTTCC--------TTSGGGCSEEEEECCCGGGHHHH-----
T ss_pred             CCEEEEeCCCCCcHH---HHHHHhCCEEEEEECCCCCccHHHHH--------HhHhhcCCEEEEECCCCcChhHH-----
Confidence            678999999943321   23458899999999987665443322        11125699999999998653211     


Q ss_pred             hhccccccHHHHHHHHHHcC------CceEEEcccCCCCCHHHHHHHHHHHHHh
Q psy15714        151 AAEVDLVSTSQGKKMRRKIK------AAEYLECSAKLNEGLDQVFIAAVRSAVK  198 (205)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  198 (205)
                           .....+.........      ..+++++||++|+|+++++++|.+.+..
T Consensus       236 -----~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~  284 (355)
T 3p32_A          236 -----RLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV  284 (355)
T ss_dssp             -----HHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence                 011112222211121      2349999999999999999999887654

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.63  E-value=5.5e-16  Score=133.28  Aligned_cols=118  Identities=14%  Similarity=0.122  Sum_probs=85.2

Q ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcC--CCCCC------C----------cCcccccc-ceeEE------------ECC
Q psy15714         20 VHKALKVTTVGDGMVGKTCLLITHTEN--KFPTD------Y----------VPTVFDNY-PDTIT------------VDN   68 (205)
Q Consensus        20 ~~~~~ki~v~G~~~~GKstli~~~~~~--~~~~~------~----------~~t~~~~~-~~~~~------------~~~   68 (205)
                      ..+..+|+|+|+.++|||||+++++..  .+...      +          -.|+.... .....            .++
T Consensus        16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~   95 (842)
T 1n0u_A           16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDG   95 (842)
T ss_dssp             GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCS
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccC
Confidence            345679999999999999999999863  11110      0          00111111 01111            234


Q ss_pred             EEEEEEEEEcCCCcccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCccccc
Q psy15714         69 KTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS  141 (205)
Q Consensus        69 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  141 (205)
                      ..+.+.||||||+.+|...+..+++.+|++|+|+|+++..+++... .|.... ..  ++|+++++||+|+..
T Consensus        96 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~-~~~~~~-~~--~~p~ilviNK~D~~~  164 (842)
T 1n0u_A           96 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTET-VLRQAL-GE--RIKPVVVINKVDRAL  164 (842)
T ss_dssp             SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHH-HHHHHH-HT--TCEEEEEEECHHHHH
T ss_pred             CCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHHHH-Hc--CCCeEEEEECCCcch
Confidence            4788999999999999988888999999999999999998887754 454433 33  799999999999863

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.63  E-value=1.6e-15  Score=114.02  Aligned_cols=126  Identities=19%  Similarity=0.087  Sum_probs=72.8

Q ss_pred             EEEEEEEcCCCcccccccc------cCcCCCcEEEEEEECCCcchHHHHHHHHH---HHHhhhCCCCCEEEEeeCccccc
Q psy15714         71 YDVTLWDTAGQEDYERLRP------MSYPNTDCFLLCFSIGSTSSYENILSKWY---PELKHHCPKVPIILVGTKADLRS  141 (205)
Q Consensus        71 ~~~~i~D~~g~~~~~~~~~------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~---~~~~~~~~~~p~ivv~nK~Dl~~  141 (205)
                      +.+.|||+||.........      ..+.. +++|+++|+....+.......+.   .....  .+.|+++|+||+|+..
T Consensus       109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~--~~~p~~iv~NK~D~~~  185 (262)
T 1yrb_A          109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLR--LGATTIPALNKVDLLS  185 (262)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHH--HTSCEEEEECCGGGCC
T ss_pred             CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcc--cCCCeEEEEecccccc
Confidence            5799999999876543321      13455 89999998765444333321111   11122  3789999999999876


Q ss_pred             Cchhhhhhhhhcc-ccccHH-------------HHHHHHHHcCC-ceEEEcccCCCCCHHHHHHHHHHHHHhh
Q psy15714        142 ENKTIDKKKAAEV-DLVSTS-------------QGKKMRRKIKA-AEYLECSAKLNEGLDQVFIAAVRSAVKK  199 (205)
Q Consensus       142 ~~~~~~~~~~~~~-~~~~~~-------------~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  199 (205)
                      ........+.... ......             ....+++.++. .+++++||++++|++++++++.+.+...
T Consensus       186 ~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~~  258 (262)
T 1yrb_A          186 EEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCTC  258 (262)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhccc
Confidence            4321111111000 000000             00111234332 2589999999999999999998877543

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.62  E-value=4e-16  Score=128.43  Aligned_cols=119  Identities=19%  Similarity=0.172  Sum_probs=80.8

Q ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCC---CCCcCccccccceeEEE--------CCE-------------------
Q psy15714         20 VHKALKVTTVGDGMVGKTCLLITHTENKFP---TDYVPTVFDNYPDTITV--------DNK-------------------   69 (205)
Q Consensus        20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~---~~~~~t~~~~~~~~~~~--------~~~-------------------   69 (205)
                      .....+|+|+|.+|+|||||+|++++..+.   ....+++. . ...+..        +..                   
T Consensus        62 ~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~-~-~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~  139 (550)
T 2qpt_A           62 FDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTD-C-FVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTF  139 (550)
T ss_dssp             TSSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCC-S-EEEEECCSSSEEECCC------------------CC
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccc-e-EEEEEECCcccccCCceeeecCcccHHHHhhhcccc
Confidence            346789999999999999999999998763   12222220 0 000000        000                   


Q ss_pred             ----E---------EEEEEEEcCCCcc-----------cccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhC
Q psy15714         70 ----T---------YDVTLWDTAGQED-----------YERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC  125 (205)
Q Consensus        70 ----~---------~~~~i~D~~g~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~  125 (205)
                          .         ..+.+|||||...           +......++..+|++++|+|+++........ .|+..+... 
T Consensus       140 ~~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~-~~l~~l~~~-  217 (550)
T 2qpt_A          140 LNRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFS-EAIGALRGH-  217 (550)
T ss_dssp             CTTEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHH-HHHHHTTTC-
T ss_pred             cccceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHH-HHHHHHHhc-
Confidence                0         2589999999764           3344455678899999999998754444443 676666554 


Q ss_pred             CCCCEEEEeeCcccccCc
Q psy15714        126 PKVPIILVGTKADLRSEN  143 (205)
Q Consensus       126 ~~~p~ivv~nK~Dl~~~~  143 (205)
                       +.|+++|+||+|+....
T Consensus       218 -~~pvilVlNK~Dl~~~~  234 (550)
T 2qpt_A          218 -EDKIRVVLNKADMVETQ  234 (550)
T ss_dssp             -GGGEEEEEECGGGSCHH
T ss_pred             -CCCEEEEEECCCccCHH
Confidence             78999999999997643

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.62  E-value=2.1e-14  Score=111.89  Aligned_cols=84  Identities=18%  Similarity=0.150  Sum_probs=56.6

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCC-CCCcCccccccceeEEECCE---------------EEEEEEEEcCCCcccc-
Q psy15714         23 ALKVTTVGDGMVGKTCLLITHTENKFP-TDYVPTVFDNYPDTITVDNK---------------TYDVTLWDTAGQEDYE-   85 (205)
Q Consensus        23 ~~ki~v~G~~~~GKstli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~~-   85 (205)
                      .++|+++|.+|+|||||++++.+..+. .++..++.......+.+++.               ...+++||+||..++. 
T Consensus         2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~   81 (363)
T 1jal_A            2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS   81 (363)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccccc
Confidence            368999999999999999999987642 23333222222223444442               1579999999987653 


Q ss_pred             ---ccccc---CcCCCcEEEEEEECCC
Q psy15714         86 ---RLRPM---SYPNTDCFLLCFSIGS  106 (205)
Q Consensus        86 ---~~~~~---~~~~~~~~i~v~d~~~  106 (205)
                         .+...   .++.+|++++|+|+++
T Consensus        82 ~~~gl~~~fl~~ir~ad~il~VvD~~~  108 (363)
T 1jal_A           82 KGEGLGNKFLANIRETDAIGHVVRCFE  108 (363)
T ss_dssp             HHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred             ccchHHHHHHHHHHhcCeEEEEEecCC
Confidence               23332   3689999999999986

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.59  E-value=7.8e-15  Score=120.69  Aligned_cols=117  Identities=14%  Similarity=0.099  Sum_probs=82.8

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhc--C-----------C-----CCCCCcCcc---cccc-ce--eEEECCEEEEEEEE
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTE--N-----------K-----FPTDYVPTV---FDNY-PD--TITVDNKTYDVTLW   76 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~--~-----------~-----~~~~~~~t~---~~~~-~~--~~~~~~~~~~~~i~   76 (205)
                      .+.=+|+|+|+.++|||||..+++.  +           .     +.+ +.+..   +... ..  .+..++  +.++|+
T Consensus        29 ~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D-~~~~EreRGITI~s~~~~~~~~~--~~iNlI  105 (548)
T 3vqt_A           29 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSD-WMAMERERGISVTTSVMQFPYRD--RVVNLL  105 (548)
T ss_dssp             HTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC---------------------CTTTEEEEEETT--EEEEEE
T ss_pred             cccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccC-ChHHHHHCCCcEeeceEEEEECC--EEEEEE
Confidence            4556899999999999999988862  1           1     111 11111   1111 11  233444  678999


Q ss_pred             EcCCCcccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCch
Q psy15714         77 DTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENK  144 (205)
Q Consensus        77 D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~  144 (205)
                      |||||.+|..-..+.++.+|++|+|+|+.+.-..+... .| ....++  ++|.++++||+|....+.
T Consensus       106 DTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~-v~-~~a~~~--~lp~i~fINK~Dr~~ad~  169 (548)
T 3vqt_A          106 DTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRK-LM-DVCRMR--ATPVMTFVNKMDREALHP  169 (548)
T ss_dssp             CCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHH-HH-HHHHHT--TCCEEEEEECTTSCCCCH
T ss_pred             eCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHH-HH-HHHHHh--CCceEEEEecccchhcch
Confidence            99999999888788899999999999999887766653 44 555566  899999999999876554

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=99.57  E-value=9.1e-16  Score=119.88  Aligned_cols=105  Identities=16%  Similarity=0.150  Sum_probs=60.6

Q ss_pred             EEEEEEEcCCCcccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhh
Q psy15714         71 YDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKK  150 (205)
Q Consensus        71 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~  150 (205)
                      +.+.++|++|-....   ......+|++++|+|+++......+. .  . +    -..|.++|+||+|+......     
T Consensus       167 ~~~iliDT~Gi~~~~---~~l~~~~d~vl~V~d~~~~~~~~~i~-~--~-i----l~~~~ivVlNK~Dl~~~~~~-----  230 (349)
T 2www_A          167 YDIILIETVGVGQSE---FAVADMVDMFVLLLPPAGGDELQGIK-R--G-I----IEMADLVAVTKSDGDLIVPA-----  230 (349)
T ss_dssp             CSEEEEECCCC--CH---HHHHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGGGHHHH-----
T ss_pred             CCEEEEECCCcchhh---hhHHhhCCEEEEEEcCCcchhHHHhH-H--H-H----HhcCCEEEEeeecCCCchhH-----
Confidence            568899999953211   22457899999999998754322221 1  1 1    15688999999998642110     


Q ss_pred             hhccccccHHHHHHHHHH------cCCceEEEcccCCCCCHHHHHHHHHHHH
Q psy15714        151 AAEVDLVSTSQGKKMRRK------IKAAEYLECSAKLNEGLDQVFIAAVRSA  196 (205)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~~i~~~~~~i~~~~  196 (205)
                           .....+.....+.      ....+++.+||++++|+++++++|.+.+
T Consensus       231 -----~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~  277 (349)
T 2www_A          231 -----RRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQ  277 (349)
T ss_dssp             -----HHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHH
Confidence                 0000111111110      1124589999999999999999998765

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=99.55  E-value=2.6e-15  Score=117.07  Aligned_cols=106  Identities=21%  Similarity=0.293  Sum_probs=65.6

Q ss_pred             EEEEEEEcCCCcccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhh
Q psy15714         71 YDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKK  150 (205)
Q Consensus        71 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~  150 (205)
                      +.+.||||||.......   ....+|++++|+|++....+..+.     . ...  +.|.++|+||+|+......     
T Consensus       149 ~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~-----~-~~~--~~p~ivv~NK~Dl~~~~~~-----  212 (341)
T 2p67_A          149 YDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIK-----K-GLM--EVADLIVINKDDGDNHTNV-----  212 (341)
T ss_dssp             CSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCC-----H-HHH--HHCSEEEECCCCTTCHHHH-----
T ss_pred             CCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHH-----H-hhh--cccCEEEEECCCCCChHHH-----
Confidence            57999999996544332   358999999999987653321111     0 111  5688999999998653210     


Q ss_pred             hhccccccHHHHHHHHHHcC------CceEEEcccCCCCCHHHHHHHHHHHHH
Q psy15714        151 AAEVDLVSTSQGKKMRRKIK------AAEYLECSAKLNEGLDQVFIAAVRSAV  197 (205)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~Sa~~~~~i~~~~~~i~~~~~  197 (205)
                           ....++.+......+      ..+++++||++|.|+++++++|.+.+.
T Consensus       213 -----~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~  260 (341)
T 2p67_A          213 -----AIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT  260 (341)
T ss_dssp             -----HHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence                 000112222222222      345899999999999999999988654

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=99.55  E-value=3.5e-14  Score=111.23  Aligned_cols=82  Identities=20%  Similarity=0.178  Sum_probs=54.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCC-CCCCcCc-cccccceeEEECC-------------------EEEEEEEEEcCCCc
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTENKF-PTDYVPT-VFDNYPDTITVDN-------------------KTYDVTLWDTAGQE   82 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~~~-~~~~~~t-~~~~~~~~~~~~~-------------------~~~~~~i~D~~g~~   82 (205)
                      ++|+++|.+|+|||||++++.+... ...+..+ ..... ....+.+                   ....+.+||+||..
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~-g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~   80 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNV-GVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLV   80 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTE-EEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccce-eeEecChHHHHHHHHHhcccccccccCCceEEEEECCCcc
Confidence            5799999999999999999987642 1222222 22111 1122221                   23579999999987


Q ss_pred             cccc----ccc---cCcCCCcEEEEEEECCC
Q psy15714         83 DYER----LRP---MSYPNTDCFLLCFSIGS  106 (205)
Q Consensus        83 ~~~~----~~~---~~~~~~~~~i~v~d~~~  106 (205)
                      .+..    +..   ..++.+|++++|+|+++
T Consensus        81 ~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~  111 (368)
T 2dby_A           81 KGAHKGEGLGNQFLAHIREVAAIAHVLRCFP  111 (368)
T ss_dssp             CCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred             ccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence            6432    211   24689999999999985

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.49  E-value=1.5e-13  Score=105.32  Aligned_cols=97  Identities=20%  Similarity=0.119  Sum_probs=78.3

Q ss_pred             CcccccccccCcCCCcEEEEEEECCCcc-hHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhcccccc-
Q psy15714         81 QEDYERLRPMSYPNTDCFLLCFSIGSTS-SYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVS-  158 (205)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-  158 (205)
                      ++++..+.+.++.++|++++|+|++++. ++..+. .|+..+...  ++|+++|+||+|+.+..            .+. 
T Consensus        66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~-~~l~~~~~~--~~~~ilV~NK~DL~~~~------------~v~~  130 (302)
T 2yv5_A           66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLD-NMLVVYEYF--KVEPVIVFNKIDLLNEE------------EKKE  130 (302)
T ss_dssp             CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHH-HHHHHHHHT--TCEEEEEECCGGGCCHH------------HHHH
T ss_pred             CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHH-HHHHHHHhC--CCCEEEEEEcccCCCcc------------ccHH
Confidence            6778888888999999999999999886 787665 788877664  89999999999997542            222 


Q ss_pred             HHHHHHHHHHcCCceEEEcccCCCCCHHHHHHHHH
Q psy15714        159 TSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAV  193 (205)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~  193 (205)
                      .++...+.+..+.. ++++||++|.|++++|..+.
T Consensus       131 ~~~~~~~~~~~g~~-~~~~SA~~g~gi~~L~~~l~  164 (302)
T 2yv5_A          131 LERWISIYRDAGYD-VLKVSAKTGEGIDELVDYLE  164 (302)
T ss_dssp             HHHHHHHHHHTTCE-EEECCTTTCTTHHHHHHHTT
T ss_pred             HHHHHHHHHHCCCe-EEEEECCCCCCHHHHHhhcc
Confidence            34556666667765 99999999999999998764

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=99.48  E-value=1.5e-14  Score=103.24  Aligned_cols=110  Identities=6%  Similarity=-0.050  Sum_probs=70.2

Q ss_pred             cCCCcccccccccCcCCCcEEEEEEECCCcchHHHHHHHH---HHHHhhh--CCCCCEEEEeeCc-ccccCchhhhhhhh
Q psy15714         78 TAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKW---YPELKHH--CPKVPIILVGTKA-DLRSENKTIDKKKA  151 (205)
Q Consensus        78 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~---~~~~~~~--~~~~p~ivv~nK~-Dl~~~~~~~~~~~~  151 (205)
                      .+|+..++.+|+.|++++|++|||+|.+|++.++ ...++   ..++...  ..++|++|++||. |+...-...+..+.
T Consensus       109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~  187 (227)
T 3l82_B          109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHE  187 (227)
T ss_dssp             --------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHH
T ss_pred             cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHH
Confidence            4588999999999999999999999999986544 33344   4444433  2589999999995 77553222111111


Q ss_pred             hccccccHHHHHHHHHHcCCceEEEcccCCCCCHHHHHHHHHHHHHhh
Q psy15714        152 AEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKK  199 (205)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  199 (205)
                      +..           ......+.+..|||.+|+|+.+.++|+.+.+..+
T Consensus       188 L~L-----------~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k  224 (227)
T 3l82_B          188 LHL-----------NLLNHPWLVQDTEAETLTGFLNGIEWILEEVESK  224 (227)
T ss_dssp             TTG-----------GGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTTC
T ss_pred             cCC-----------cCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHhh
Confidence            111           0111345589999999999999999999877544

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=99.48  E-value=3.3e-14  Score=119.12  Aligned_cols=116  Identities=16%  Similarity=0.074  Sum_probs=80.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhc--CCCCCC-----------CcCcc---cccc-ceeEEECCEEEEEEEEEcCCCcccccc
Q psy15714         25 KVTTVGDGMVGKTCLLITHTE--NKFPTD-----------YVPTV---FDNY-PDTITVDNKTYDVTLWDTAGQEDYERL   87 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~--~~~~~~-----------~~~t~---~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~   87 (205)
                      +|+|+|+.++|||||..+++.  +.+...           +.+..   +... .....+....+.++|+|||||.+|..-
T Consensus         4 Ni~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~E   83 (638)
T 3j25_A            4 NIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLAE   83 (638)
T ss_dssp             CCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHHH
Confidence            689999999999999988762  222110           00000   1111 111222233467899999999999888


Q ss_pred             cccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCch
Q psy15714         88 RPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENK  144 (205)
Q Consensus        88 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~  144 (205)
                      ..+.++.+|++|+|+|+.+.-..+..  .......++  ++|.++++||+|....+.
T Consensus        84 v~raL~~~DgavlVVDa~~GV~~qT~--~v~~~a~~~--~lp~i~~INKmDr~~a~~  136 (638)
T 3j25_A           84 VYRSLSVLDGAILLISAKDGVQAQTR--ILFHALRKM--GIPTIFFINKIDQNGIDL  136 (638)
T ss_dssp             HHHHHTTCSEEECCEESSCTTCSHHH--HHHHHHHHH--TCSCEECCEECCSSSCCS
T ss_pred             HHHHHHHhCEEEEEEeCCCCCcHHHH--HHHHHHHHc--CCCeEEEEeccccccCCH
Confidence            88889999999999999987655543  344555566  899999999999865543

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=99.47  E-value=5.6e-14  Score=118.54  Aligned_cols=160  Identities=18%  Similarity=0.110  Sum_probs=96.7

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCC-CCcCcccc-----------------------------------------
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTENKFPT-DYVPTVFD-----------------------------------------   58 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~-~~~~t~~~-----------------------------------------   58 (205)
                      ....+|+|+|.+++|||||++++.+..+.+ ....++..                                         
T Consensus        49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~  128 (772)
T 3zvr_A           49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  128 (772)
T ss_dssp             GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence            456799999999999999999999977622 11100000                                         


Q ss_pred             -----cc---ceeEEE-CCEEEEEEEEEcCCCcc-------------cccccccCc-CCCcEEEEEEECCCcchHHHHHH
Q psy15714         59 -----NY---PDTITV-DNKTYDVTLWDTAGQED-------------YERLRPMSY-PNTDCFLLCFSIGSTSSYENILS  115 (205)
Q Consensus        59 -----~~---~~~~~~-~~~~~~~~i~D~~g~~~-------------~~~~~~~~~-~~~~~~i~v~d~~~~~s~~~~~~  115 (205)
                           .+   ...+.+ ......+.++||||-..             .......++ ..+|++++|+|+++.....+.. 
T Consensus       129 ~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l-  207 (772)
T 3zvr_A          129 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL-  207 (772)
T ss_dssp             HCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHH-
T ss_pred             cCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHH-
Confidence                 00   000100 00112478999999533             112222233 6789999999998754333332 


Q ss_pred             HHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHH--HHHHcCCceEEEcccCCCCCHHHHHHHHH
Q psy15714        116 KWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKK--MRRKIKAAEYLECSAKLNEGLDQVFIAAV  193 (205)
Q Consensus       116 ~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~  193 (205)
                      .++..+...  +.|+++|+||+|+.....            ........  +....+..+++.+||++|.|++++++.+.
T Consensus       208 ~ll~~L~~~--g~pvIlVlNKiDlv~~~~------------~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~  273 (772)
T 3zvr_A          208 KIAKEVDPQ--GQRTIGVITKLDLMDEGT------------DARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALA  273 (772)
T ss_dssp             HHHHHHCTT--CSSEEEEEECTTSSCTTC------------CSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHH
T ss_pred             HHHHHHHhc--CCCEEEEEeCcccCCcch------------hhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHH
Confidence            345555544  799999999999976431            11110000  00012334578899999999999999888


Q ss_pred             HH
Q psy15714        194 RS  195 (205)
Q Consensus       194 ~~  195 (205)
                      +.
T Consensus       274 ~e  275 (772)
T 3zvr_A          274 AE  275 (772)
T ss_dssp             HH
T ss_pred             HH
Confidence            63

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.47  E-value=2.6e-13  Score=106.34  Aligned_cols=118  Identities=18%  Similarity=0.138  Sum_probs=81.4

Q ss_pred             cccceeeEEEEECCCCCCHHHHHHHHhcCCC-CCCCcCccccccceeEEECCEEEEEEEEEcCCCccccc----c---cc
Q psy15714         18 KSVHKALKVTTVGDGMVGKTCLLITHTENKF-PTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYER----L---RP   89 (205)
Q Consensus        18 ~~~~~~~ki~v~G~~~~GKstli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~----~---~~   89 (205)
                      .......+|+++|.|++|||||+|++++... ..++..++.+.....+.+++  .++++.|+||-..-..    .   .-
T Consensus        67 v~k~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~--~~i~l~D~pGl~~~a~~~~~~g~~~l  144 (376)
T 4a9a_A           67 VARTGVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG--AKIQMLDLPGIIDGAKDGRGRGKQVI  144 (376)
T ss_dssp             BCBCSSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETT--EEEEEEECGGGCCC-----CHHHHHH
T ss_pred             EeecCCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCC--cEEEEEeCCCccCCchhhhHHHHHHH
Confidence            3445667999999999999999999998654 34555565555556677888  4578889999532111    1   11


Q ss_pred             cCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhC---CCCCEEEEeeCcccc
Q psy15714         90 MSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC---PKVPIILVGTKADLR  140 (205)
Q Consensus        90 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~  140 (205)
                      ..++.+|++++|+|++++..-..   .+...+....   ...|.+++.||.|..
T Consensus       145 ~~i~~ad~il~vvD~~~p~~~~~---~i~~EL~~~~~~l~~k~~~i~~nK~d~~  195 (376)
T 4a9a_A          145 AVARTCNLLFIILDVNKPLHHKQ---IIEKELEGVGIRLNKTPPDILIKKKEKG  195 (376)
T ss_dssp             HHHHHCSEEEEEEETTSHHHHHH---HHHHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred             HHHHhcCccccccccCccHHHHH---HHHHHHHHhhHhhccCChhhhhhHhhhh
Confidence            24577999999999998743322   2223333332   578899999999964

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=99.41  E-value=2.4e-12  Score=109.15  Aligned_cols=119  Identities=17%  Similarity=0.089  Sum_probs=79.6

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhc--------CCCCCC--CcCcc------cccc-ceeEE--EC-----CEEEEEEEE
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTE--------NKFPTD--YVPTV------FDNY-PDTIT--VD-----NKTYDVTLW   76 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~--------~~~~~~--~~~t~------~~~~-~~~~~--~~-----~~~~~~~i~   76 (205)
                      .+-=+|+|+|+.++|||||..+++.        +.....  +.-+.      +... ...+.  ..     ...+.++|+
T Consensus        11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI   90 (709)
T 4fn5_A           11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI   90 (709)
T ss_dssp             GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred             HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence            3445799999999999999988762        121110  00000      0011 11111  11     135789999


Q ss_pred             EcCCCcccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCc
Q psy15714         77 DTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSEN  143 (205)
Q Consensus        77 D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~  143 (205)
                      |||||-+|..-....++-+|++|+|+|+...-..+...  .+....+.  ++|.++++||+|....+
T Consensus        91 DTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~--v~~~a~~~--~lp~i~~iNKiDr~~a~  153 (709)
T 4fn5_A           91 DTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSET--VWRQANKY--GVPRIVYVNKMDRQGAN  153 (709)
T ss_dssp             CCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHH--HHHHHHHH--TCCEEEEEECSSSTTCC
T ss_pred             eCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHH--HHHHHHHc--CCCeEEEEccccccCcc
Confidence            99999999888778899999999999999886665543  34444555  89999999999986543

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=99.35  E-value=3.6e-13  Score=100.68  Aligned_cols=110  Identities=6%  Similarity=-0.070  Sum_probs=74.4

Q ss_pred             cCCCcccccccccCcCCCcEEEEEEECCCcchHHHHHHH---HHHHHhhh--CCCCCEEEEeeC-cccccCchhhhhhhh
Q psy15714         78 TAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSK---WYPELKHH--CPKVPIILVGTK-ADLRSENKTIDKKKA  151 (205)
Q Consensus        78 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~---~~~~~~~~--~~~~p~ivv~nK-~Dl~~~~~~~~~~~~  151 (205)
                      .+|++..+.+|+.|++++|++|||+|++|++.++ ...+   +..++...  ..++|++|++|| .|+...-...+..+.
T Consensus       194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~  272 (312)
T 3l2o_B          194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHE  272 (312)
T ss_dssp             ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHH
T ss_pred             CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHH
Confidence            4688999999999999999999999999987544 2222   33444332  258999999996 688654322221111


Q ss_pred             hccccccHHHHHHHHHHcCCceEEEcccCCCCCHHHHHHHHHHHHHhh
Q psy15714        152 AEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKK  199 (205)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  199 (205)
                      +..           ......+.+..|||.+|+|+.+.++|+.+.+..+
T Consensus       273 L~L-----------~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~k  309 (312)
T 3l2o_B          273 LHL-----------NLLNHPWLVQDTEAETLTGFLNGIEWILEEVESK  309 (312)
T ss_dssp             TTG-----------GGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC-
T ss_pred             cCC-----------ccCCCcEEEEecccCCCcCHHHHHHHHHHHHHhh
Confidence            111           0011345589999999999999999999887544

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.34  E-value=1.7e-11  Score=95.30  Aligned_cols=104  Identities=20%  Similarity=0.234  Sum_probs=62.2

Q ss_pred             EEEEEEEcCCCcccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhh
Q psy15714         71 YDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKK  150 (205)
Q Consensus        71 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~  150 (205)
                      +.+.++||+|...-..   .....+|++++++|+......+.+. ..   +.    ..|.++++||+|+....       
T Consensus       148 ~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~~i~-~~---i~----~~~~ivvlNK~Dl~~~~-------  209 (337)
T 2qm8_A          148 FDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQGIK-KG---IF----ELADMIAVNKADDGDGE-------  209 (337)
T ss_dssp             CCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC------CC-TT---HH----HHCSEEEEECCSTTCCH-------
T ss_pred             CCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHHHHH-HH---Hh----ccccEEEEEchhccCch-------
Confidence            5689999999643221   2347899999999986443221111 11   11    24567788999975432       


Q ss_pred             hhccccccHHHHHHHHHHc---C------CceEEEcccCCCCCHHHHHHHHHHHHH
Q psy15714        151 AAEVDLVSTSQGKKMRRKI---K------AAEYLECSAKLNEGLDQVFIAAVRSAV  197 (205)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~---~------~~~~~~~Sa~~~~~i~~~~~~i~~~~~  197 (205)
                           .......+.+....   .      ..+++.+||+++.|++++++.|.+...
T Consensus       210 -----~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~  260 (337)
T 2qm8_A          210 -----RRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS  260 (337)
T ss_dssp             -----HHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             -----hHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence                 11112222222211   1      234888999999999999999987653

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=99.21  E-value=7.1e-12  Score=98.64  Aligned_cols=91  Identities=15%  Similarity=0.110  Sum_probs=51.1

Q ss_pred             ccceeeEEEEECCCCCCHHHHHHHHhcCCCCC-CCcCccccccceeEEECCE---------------EEEEEEEEcCCCc
Q psy15714         19 SVHKALKVTTVGDGMVGKTCLLITHTENKFPT-DYVPTVFDNYPDTITVDNK---------------TYDVTLWDTAGQE   82 (205)
Q Consensus        19 ~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~   82 (205)
                      .....++|+++|.+|+|||||++++.+..+.. .+..++.......+.+++.               ...+++||+||..
T Consensus        18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~   97 (396)
T 2ohf_A           18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLV   97 (396)
T ss_dssp             CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC--
T ss_pred             hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcc
Confidence            34566899999999999999999999876532 2222222222223333331               2359999999987


Q ss_pred             cccc-------ccccCcCCCcEEEEEEECCCcch
Q psy15714         83 DYER-------LRPMSYPNTDCFLLCFSIGSTSS  109 (205)
Q Consensus        83 ~~~~-------~~~~~~~~~~~~i~v~d~~~~~s  109 (205)
                      .+.+       .+...++.+|++++|+|+.+..+
T Consensus        98 ~~as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~  131 (396)
T 2ohf_A           98 KGAHNGQGLGNAFLSHISACDGIFHLTRAFEDDD  131 (396)
T ss_dssp             ---------CCHHHHHHHTSSSEEEEEEC-----
T ss_pred             cccchhhHHHHHHHHHHHhcCeEEEEEecCCCcc
Confidence            6543       23345789999999999986443

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=99.12  E-value=1.2e-10  Score=91.59  Aligned_cols=102  Identities=17%  Similarity=0.166  Sum_probs=75.6

Q ss_pred             CCcccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccH
Q psy15714         80 GQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVST  159 (205)
Q Consensus        80 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~  159 (205)
                      .++.|+.+.+.+.+.++++++|+|++++.      ..|...+.++..+.|+++|+||+|+.......         ....
T Consensus        55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~------~~~~~~l~~~~~~~p~ilV~NK~DL~~~~~~~---------~~~~  119 (368)
T 3h2y_A           55 TDDDFLRILNGIGKSDALVVKIVDIFDFN------GSWLPGLHRFVGNNKVLLVGNKADLIPKSVKH---------DKVK  119 (368)
T ss_dssp             -CHHHHHHHHHHHHSCCEEEEEEETTSHH------HHCCTTHHHHSSSSCEEEEEECGGGSCTTSCH---------HHHH
T ss_pred             CHHHHHHHHHHHhccCcEEEEEEECCCCc------ccHHHHHHHHhCCCcEEEEEEChhcCCcccCH---------HHHH
Confidence            45788888888899999999999998853      25777777777789999999999997542100         0112


Q ss_pred             HHHHHHHHHcCCc--eEEEcccCCCCCHHHHHHHHHHHH
Q psy15714        160 SQGKKMRRKIKAA--EYLECSAKLNEGLDQVFIAAVRSA  196 (205)
Q Consensus       160 ~~~~~~~~~~~~~--~~~~~Sa~~~~~i~~~~~~i~~~~  196 (205)
                      +..+..++..+..  +++++||++|+|++++++.+.+..
T Consensus       120 ~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~  158 (368)
T 3h2y_A          120 HWMRYSAKQLGLKPEDVFLISAAKGQGIAELADAIEYYR  158 (368)
T ss_dssp             HHHHHHHHHTTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence            2333445666662  589999999999999999987643

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=99.01  E-value=4.5e-10  Score=88.32  Aligned_cols=102  Identities=20%  Similarity=0.199  Sum_probs=74.3

Q ss_pred             CCcccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccH
Q psy15714         80 GQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVST  159 (205)
Q Consensus        80 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~  159 (205)
                      .++.|+.+...+++.++++++|+|+.++.+      .|...+.+...+.|+++|+||+|+.......         ....
T Consensus        57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~------s~~~~l~~~l~~~piilV~NK~DLl~~~~~~---------~~~~  121 (369)
T 3ec1_A           57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG------SFIPGLPRFAADNPILLVGNKADLLPRSVKY---------PKLL  121 (369)
T ss_dssp             --CHHHHHHHHHHHHCCEEEEEEETTCSGG------GCCSSHHHHCTTSCEEEEEECGGGSCTTCCH---------HHHH
T ss_pred             CHHHHHHHHHHhhccCcEEEEEEECCCCCC------chhhHHHHHhCCCCEEEEEEChhcCCCccCH---------HHHH
Confidence            478899988888899999999999999763      4555566656689999999999997642100         0112


Q ss_pred             HHHHHHHHHcCC--ceEEEcccCCCCCHHHHHHHHHHHH
Q psy15714        160 SQGKKMRRKIKA--AEYLECSAKLNEGLDQVFIAAVRSA  196 (205)
Q Consensus       160 ~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~~~~i~~~~  196 (205)
                      +.....++..+.  ..++.+||++|+|++++++.+.+..
T Consensus       122 ~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~  160 (369)
T 3ec1_A          122 RWMRRMAEELGLCPVDVCLVSAAKGIGMAKVMEAINRYR  160 (369)
T ss_dssp             HHHHHHHHTTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence            233334556666  3589999999999999999987654

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.92  E-value=6e-09  Score=82.80  Aligned_cols=117  Identities=24%  Similarity=0.286  Sum_probs=61.3

Q ss_pred             eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCc--ccccc-ceeE--EECCEEEEEEEEEcCCCccc------------
Q psy15714         22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPT--VFDNY-PDTI--TVDNKTYDVTLWDTAGQEDY------------   84 (205)
Q Consensus        22 ~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t--~~~~~-~~~~--~~~~~~~~~~i~D~~g~~~~------------   84 (205)
                      ..++++|+|++|+|||||++.+.+..+.......  ..... ...+  ...+....++++|++|-...            
T Consensus        41 ei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~  120 (427)
T 2qag_B           41 FCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVE  120 (427)
T ss_dssp             CEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHH
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHH
Confidence            3456999999999999999999887543211110  11111 1111  11222346889999874321            


Q ss_pred             ------ccc-------cc--cCcCCCc---EEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCc
Q psy15714         85 ------ERL-------RP--MSYPNTD---CFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSEN  143 (205)
Q Consensus        85 ------~~~-------~~--~~~~~~~---~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~  143 (205)
                            ...       .+  .....++   +++|+.|....-+..++  .++..+.   .++|+|+|.||+|.....
T Consensus       121 ~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Di--eilk~L~---~~~~vI~Vi~KtD~Lt~~  192 (427)
T 2qag_B          121 FIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDL--VTMKKLD---SKVNIIPIIAKADAISKS  192 (427)
T ss_dssp             HHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHH--HHHHHTC---SCSEEEEEESCGGGSCHH
T ss_pred             HHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHH--HHHHHHh---hCCCEEEEEcchhccchH
Confidence                  000       00  0122333   35556666544333332  3444443   589999999999987654

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=98.88  E-value=1.3e-08  Score=76.60  Aligned_cols=116  Identities=21%  Similarity=0.221  Sum_probs=63.4

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCCCc------CccccccceeEEE--C--CEEEEEEEEEcCCCccc--------
Q psy15714         23 ALKVTTVGDGMVGKTCLLITHTENKFPTDYV------PTVFDNYPDTITV--D--NKTYDVTLWDTAGQEDY--------   84 (205)
Q Consensus        23 ~~ki~v~G~~~~GKstli~~~~~~~~~~~~~------~t~~~~~~~~~~~--~--~~~~~~~i~D~~g~~~~--------   84 (205)
                      .++++++|++|+|||||++.+.+-..+....      +.........+.+  .  +....++++|++|-...        
T Consensus         2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~   81 (270)
T 3sop_A            2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE   81 (270)
T ss_dssp             EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence            5899999999999999999988643221100      0000011111111  1  22236889999882110        


Q ss_pred             ----------cc----------ccccCcCCCcEEEEEEECC-CcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCc
Q psy15714         85 ----------ER----------LRPMSYPNTDCFLLCFSIG-STSSYENILSKWYPELKHHCPKVPIILVGTKADLRSEN  143 (205)
Q Consensus        85 ----------~~----------~~~~~~~~~~~~i~v~d~~-~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~  143 (205)
                                ..          ..+..+..+.+.+++.|.. ..-...+.  ..+..+..   .+++++|.+|.|.....
T Consensus        82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~--~~l~~L~~---~~~vI~Vi~K~D~lt~~  156 (270)
T 3sop_A           82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDL--EFMKHLSK---VVNIIPVIAKADTMTLE  156 (270)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHH--HHHHHHHT---TSEEEEEETTGGGSCHH
T ss_pred             HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHH--HHHHHHHh---cCcEEEEEeccccCCHH
Confidence                      00          0112233467788888854 33222222  44455543   38999999999987654

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.88  E-value=2.9e-10  Score=89.35  Aligned_cols=139  Identities=13%  Similarity=0.060  Sum_probs=77.7

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcC------CCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccc----c---
Q psy15714         23 ALKVTTVGDGMVGKTCLLITHTEN------KFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERL----R---   88 (205)
Q Consensus        23 ~~ki~v~G~~~~GKstli~~~~~~------~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~----~---   88 (205)
                      ..+++++|.+|+|||||+|++.+.      ....  ....++.. ...+.++.   .+.++||||-......    .   
T Consensus       162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~--~~~~gtT~~~~~~~~~~---~~~liDtPG~~~~~~~~~~l~~~~  236 (369)
T 3ec1_A          162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITT--SYFPGTTLDMIEIPLES---GATLYDTPGIINHHQMAHFVDARD  236 (369)
T ss_dssp             TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEE--EECTTSSCEEEEEECST---TCEEEECCSCCCCSSGGGGSCTTT
T ss_pred             cCcEEEEcCCCCchHHHHHHHHhhccCCccceee--cCCCCeEEeeEEEEeCC---CeEEEeCCCcCcHHHHHHHHhHHH
Confidence            357999999999999999999975      2211  11111111 12233332   2788999995322211    1   


Q ss_pred             -ccC--cCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHH
Q psy15714         89 -PMS--YPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKM  165 (205)
Q Consensus        89 -~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (205)
                       ..+  -...+.++++++.....-+..+  ..++.+..  .+.|+++++||.|.....             -.......+
T Consensus       237 l~~~~~~~~i~~~~~~l~~~~~~~~g~l--~~l~~l~~--~~~~~~~v~~k~d~~~~~-------------~~~~~~~~~  299 (369)
T 3ec1_A          237 LKIITPKREIHPRVYQLNEGQTLFFGGL--ARLDYIKG--GRRSFVCYMANELTVHRT-------------KLEKADSLY  299 (369)
T ss_dssp             HHHHSCSSCCCCEEEEECTTEEEEETTT--EEEEEEES--SSEEEEEEECTTSCEEEE-------------EGGGHHHHH
T ss_pred             HHHHhcccccCceEEEEcCCceEEECCE--EEEEEccC--CCceEEEEecCCcccccc-------------cHHHHHHHH
Confidence             111  2668899999987433111122  11222322  378999999999987643             222333444


Q ss_pred             HHHcCCceEEEcccCCCCC
Q psy15714        166 RRKIKAAEYLECSAKLNEG  184 (205)
Q Consensus       166 ~~~~~~~~~~~~Sa~~~~~  184 (205)
                      .+..+.. +...++....+
T Consensus       300 ~~~~g~~-l~p~~~~~~~~  317 (369)
T 3ec1_A          300 ANQLGEL-LSPPSKRYAAE  317 (369)
T ss_dssp             HHHBTTT-BCSSCGGGTTT
T ss_pred             HHhcCCc-cCCCCchhhhh
Confidence            5555544 55555544443

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=98.86  E-value=4.4e-09  Score=82.93  Aligned_cols=88  Identities=19%  Similarity=0.190  Sum_probs=58.8

Q ss_pred             ccceeeEEEEECCCCCCHHHHHHHHhcCCC--CCCCcCccccccceeEEECCE---------------EEEEEEEEcCCC
Q psy15714         19 SVHKALKVTTVGDGMVGKTCLLITHTENKF--PTDYVPTVFDNYPDTITVDNK---------------TYDVTLWDTAGQ   81 (205)
Q Consensus        19 ~~~~~~ki~v~G~~~~GKstli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~---------------~~~~~i~D~~g~   81 (205)
                      ......+++++|++|+|||||++++.+...  ..+++.++.......+.+.+.               ...+.+||+||.
T Consensus        16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl   95 (392)
T 1ni3_A           16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL   95 (392)
T ss_dssp             SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred             cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence            344568999999999999999999998764  233333333333334555541               135899999995


Q ss_pred             cccc-------cccccCcCCCcEEEEEEECCC
Q psy15714         82 EDYE-------RLRPMSYPNTDCFLLCFSIGS  106 (205)
Q Consensus        82 ~~~~-------~~~~~~~~~~~~~i~v~d~~~  106 (205)
                      ....       ..+...++.+|++++|+|+.+
T Consensus        96 ~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~  127 (392)
T 1ni3_A           96 TKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD  127 (392)
T ss_dssp             CCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             ccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            4321       122234578999999999864

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=98.85  E-value=8.2e-08  Score=76.22  Aligned_cols=166  Identities=14%  Similarity=0.102  Sum_probs=86.2

Q ss_pred             eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcc-cccc--ceeEEECCEEEEEEEEEcCCCccc----ccc-cccCcC
Q psy15714         22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNY--PDTITVDNKTYDVTLWDTAGQEDY----ERL-RPMSYP   93 (205)
Q Consensus        22 ~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~-~~~~--~~~~~~~~~~~~~~i~D~~g~~~~----~~~-~~~~~~   93 (205)
                      ....++++|++|+|||||+|.+.+-..+....-+. +...  ...+.-......+.+||++|-...    ... ....+.
T Consensus        68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~  147 (413)
T 1tq4_A           68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFY  147 (413)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGG
T ss_pred             CCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCC
Confidence            34589999999999999999998743211100000 0000  001111111124789999984321    111 111234


Q ss_pred             CCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCccccc-CchhhhhhhhhccccccH----HHHHHHH--
Q psy15714         94 NTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS-ENKTIDKKKAAEVDLVST----SQGKKMR--  166 (205)
Q Consensus        94 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~----~~~~~~~--  166 (205)
                      ..+..++ ++..... -..+  .+...+...  +.|+++|.||.|+.- +.+..      .......    +..+.+.  
T Consensus       148 ~~~~~~~-lS~G~~~-kqrv--~la~aL~~~--~~p~~lV~tkpdlllLDEPts------gLD~~~~~~l~~~l~~l~~~  215 (413)
T 1tq4_A          148 EYDFFII-ISATRFK-KNDI--DIAKAISMM--KKEFYFVRTKVDSDITNEADG------EPQTFDKEKVLQDIRLNCVN  215 (413)
T ss_dssp             GCSEEEE-EESSCCC-HHHH--HHHHHHHHT--TCEEEEEECCHHHHHHHHHTT------CCTTCCHHHHHHHHHHHHHH
T ss_pred             ccCCeEE-eCCCCcc-HHHH--HHHHHHHhc--CCCeEEEEecCcccccCcccc------cCCHHHHHHHHHHHHHHHHH
Confidence            4455555 7765322 1222  344444444  789999999999741 11100      0001122    2223332  


Q ss_pred             --HHcC--CceEEEccc--CCCCCHHHHHHHHHHHHHhh
Q psy15714        167 --RKIK--AAEYLECSA--KLNEGLDQVFIAAVRSAVKK  199 (205)
Q Consensus       167 --~~~~--~~~~~~~Sa--~~~~~i~~~~~~i~~~~~~~  199 (205)
                        ...+  ....+.+|+  ..++|++++.+.+.+.+...
T Consensus       216 ~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg  254 (413)
T 1tq4_A          216 TFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIY  254 (413)
T ss_dssp             HHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGG
T ss_pred             HHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccc
Confidence              1222  234788999  55667999999998776443

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.82  E-value=2.2e-10  Score=89.98  Aligned_cols=114  Identities=11%  Similarity=0.056  Sum_probs=65.3

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCC-----CCcCcccccc-ceeEEECCEEEEEEEEEcCCCccccccc--------
Q psy15714         23 ALKVTTVGDGMVGKTCLLITHTENKFPT-----DYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLR--------   88 (205)
Q Consensus        23 ~~ki~v~G~~~~GKstli~~~~~~~~~~-----~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~--------   88 (205)
                      ..+++++|.+|+|||||+|++.+.....     ......++.. ...+.+++.   +.++||||-.......        
T Consensus       160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l  236 (368)
T 3h2y_A          160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQSL  236 (368)
T ss_dssp             TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHHHH
T ss_pred             cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHHH
Confidence            3589999999999999999998753111     0011111111 122333332   7899999953322110        


Q ss_pred             c--cCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCc
Q psy15714         89 P--MSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSEN  143 (205)
Q Consensus        89 ~--~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~  143 (205)
                      .  ......+.++|+++.....-...+  ..++.+..  .++|+++++||.|.....
T Consensus       237 ~~~~~~~~i~~~~~~l~~~~~~~~g~l--~~~d~l~~--~~~~~~~v~nk~d~~~~~  289 (368)
T 3h2y_A          237 KLITPTKEIKPMVFQLNEEQTLFFSGL--ARFDYVSG--GRRAFTCHFSNRLTIHRT  289 (368)
T ss_dssp             HHHSCSSCCCCEEEEECTTEEEEETTT--EEEEEEES--SSEEEEEEECTTSCEEEE
T ss_pred             HHhccccccCceEEEEcCCCEEEEcce--EEEEEecC--CCceEEEEecCccccccc
Confidence            0  114667888999887432211122  12222332  378999999999987653

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.80  E-value=8.4e-09  Score=78.10  Aligned_cols=102  Identities=19%  Similarity=0.090  Sum_probs=67.1

Q ss_pred             EEEcCCCc-ccccccccCcCCCcEEEEEEECCCcchHHH-HHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhh
Q psy15714         75 LWDTAGQE-DYERLRPMSYPNTDCFLLCFSIGSTSSYEN-ILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAA  152 (205)
Q Consensus        75 i~D~~g~~-~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~  152 (205)
                      |-.+|||. .........+..+|+++.|+|+.++.+... ....|       ..+.|.++|+||+|+.+..         
T Consensus         3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~-------l~~kp~ilVlNK~DL~~~~---------   66 (282)
T 1puj_A            3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDI-------LKNKPRIMLLNKADKADAA---------   66 (282)
T ss_dssp             ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHH-------CSSSCEEEEEECGGGSCHH---------
T ss_pred             CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHH-------HCCCCEEEEEECcccCCHH---------
Confidence            45789986 333444457899999999999999876542 11122       2589999999999997531         


Q ss_pred             ccccccHHHHHHHHHHcCCceEEEcccCCCCCHHHHHHHHHHHHHh
Q psy15714        153 EVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVK  198 (205)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  198 (205)
                          . .+....+.+..+.. ++.+||.++.|++++++.+.+.+..
T Consensus        67 ----~-~~~~~~~~~~~g~~-~i~iSA~~~~gi~~L~~~i~~~l~~  106 (282)
T 1puj_A           67 ----V-TQQWKEHFENQGIR-SLSINSVNGQGLNQIVPASKEILQE  106 (282)
T ss_dssp             ----H-HHHHHHHHHTTTCC-EEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred             ----H-HHHHHHHHHhcCCc-EEEEECCCcccHHHHHHHHHHHHHH
Confidence                1 11222333344554 8999999999999999988877653

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=98.80  E-value=3.8e-09  Score=85.86  Aligned_cols=151  Identities=18%  Similarity=0.125  Sum_probs=84.5

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHh------cCCCC----CCCcCccc-------c--ccceeEEE---------------
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHT------ENKFP----TDYVPTVF-------D--NYPDTITV---------------   66 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~------~~~~~----~~~~~t~~-------~--~~~~~~~~---------------   66 (205)
                      .+...|+++|.+|+||||+++++.      +.+..    +.+.+...       .  ... .+..               
T Consensus        99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~-v~~~~~~~dp~~i~~~al~  177 (504)
T 2j37_W           99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIP-FYGSYTEMDPVIIASEGVE  177 (504)
T ss_dssp             S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCC-EEECCCCSCHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCce-EEccCCCCCHHHHHHHHHH
Confidence            345689999999999999998887      33210    11111100       0  000 0010               


Q ss_pred             --CCEEEEEEEEEcCCCccccc-ccc---cC--cCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCE-EEEeeCc
Q psy15714         67 --DNKTYDVTLWDTAGQEDYER-LRP---MS--YPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPI-ILVGTKA  137 (205)
Q Consensus        67 --~~~~~~~~i~D~~g~~~~~~-~~~---~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-ivv~nK~  137 (205)
                        ....+.+.|+||||...... +..   ..  +-.+|.+++|+|+........    ....+..   .+|+ ++|+||.
T Consensus       178 ~~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~----~a~~~~~---~~~i~gvVlNK~  250 (504)
T 2j37_W          178 KFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEA----QAKAFKD---KVDVASVIVTKL  250 (504)
T ss_dssp             HHHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHH----HHHHHHH---HHCCCCEEEECT
T ss_pred             HHHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHH----HHHHHHh---hcCceEEEEeCC
Confidence              00235789999999753211 110   00  227899999999987643222    2223332   2675 8999999


Q ss_pred             ccccCchhhhhhhhhccccccHHHHHHHHHHcC-----------------CceEEEcccCCCCC-HHHHHHHHHHH
Q psy15714        138 DLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIK-----------------AAEYLECSAKLNEG-LDQVFIAAVRS  195 (205)
Q Consensus       138 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~Sa~~~~~-i~~~~~~i~~~  195 (205)
                      |.......                +.......+                 ..+.+.+|+..|.| ++++++++.+.
T Consensus       251 D~~~~~g~----------------~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~  310 (504)
T 2j37_W          251 DGHAKGGG----------------ALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL  310 (504)
T ss_dssp             TSCCCCTH----------------HHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred             ccccchHH----------------HHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence            98743210                111111111                 11234579999999 99999988765

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.46  E-value=2.2e-07  Score=70.35  Aligned_cols=58  Identities=19%  Similarity=0.209  Sum_probs=36.2

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCc
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQE   82 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~   82 (205)
                      ...++++++|.+|+|||||+|++.+...... .+..+... ...+..+.   .+.+|||||-.
T Consensus       118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~l~DtpG~~  176 (282)
T 1puj_A          118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKT-GDRPGITTSQQWVKVGK---ELELLDTPGIL  176 (282)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CCEEETT---TEEEEECCCCC
T ss_pred             CCCceEEEEecCCCchHHHHHHHhcCceeec-CCCCCeeeeeEEEEeCC---CEEEEECcCcC
Confidence            4568999999999999999999998763211 11111111 11233332   58899999963

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.44  E-value=1.2e-07  Score=70.91  Aligned_cols=56  Identities=18%  Similarity=0.138  Sum_probs=35.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccc-eeEEECCEEEEEEEEEcCCCcc
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYP-DTITVDNKTYDVTLWDTAGQED   83 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~   83 (205)
                      ++++++|.+|+|||||+|++.+..... ..++.+.... ..+..+.   .+.+|||||...
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~~-~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~~  156 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRASS-VGAQPGITKGIQWFSLEN---GVKILDTPGILY  156 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECTT---SCEEESSCEECC
T ss_pred             hheEEeCCCCCCHHHHHHHHhcccccc-cCCCCCCccceEEEEeCC---CEEEEECCCccc
Confidence            699999999999999999999876532 1222232221 2233222   589999999654

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.32  E-value=4.7e-07  Score=69.15  Aligned_cols=93  Identities=20%  Similarity=0.149  Sum_probs=61.5

Q ss_pred             cccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHH
Q psy15714         86 RLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKM  165 (205)
Q Consensus        86 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (205)
                      .+.+..+.++|.+++|+|+.++..-.+....++......  ++|.++|+||+||.+....          ....++....
T Consensus        78 ~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~--~~~~vivlnK~DL~~~~~~----------~~~~~~~~~~  145 (307)
T 1t9h_A           78 ELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEAN--DIQPIICITKMDLIEDQDT----------EDTIQAYAED  145 (307)
T ss_dssp             EETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTT--TCEEEEEEECGGGCCCHHH----------HHHHHHHHHH
T ss_pred             hhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHC--CCCEEEEEECCccCchhhh----------HHHHHHHHHH
Confidence            334557899999999999987754334444555544444  8999999999999864210          0001222333


Q ss_pred             HHHcCCceEEEcccCCCCCHHHHHHH
Q psy15714        166 RRKIKAAEYLECSAKLNEGLDQVFIA  191 (205)
Q Consensus       166 ~~~~~~~~~~~~Sa~~~~~i~~~~~~  191 (205)
                      .+..+.. ++.+||.++.|+++++..
T Consensus       146 y~~~g~~-v~~~sa~~~~g~~~L~~~  170 (307)
T 1t9h_A          146 YRNIGYD-VYLTSSKDQDSLADIIPH  170 (307)
T ss_dssp             HHHHTCC-EEECCHHHHTTCTTTGGG
T ss_pred             HHhCCCe-EEEEecCCCCCHHHHHhh
Confidence            3345665 899999999998877653

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=98.29  E-value=3.1e-06  Score=67.63  Aligned_cols=66  Identities=17%  Similarity=0.111  Sum_probs=39.6

Q ss_pred             EEEEEEEcCCCccccc-----cc-ccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccC
Q psy15714         71 YDVTLWDTAGQEDYER-----LR-PMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSE  142 (205)
Q Consensus        71 ~~~~i~D~~g~~~~~~-----~~-~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  142 (205)
                      +.+.|+||+|......     +. ......+|.+++|+|+.......+.    ...+...  --+..||+||.|....
T Consensus       183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~----a~~f~~~--~~i~gVIlTKlD~~~~  254 (443)
T 3dm5_A          183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQ----ALAFKEA--TPIGSIIVTKLDGSAK  254 (443)
T ss_dssp             CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHH----HHHHHHS--CTTEEEEEECCSSCSS
T ss_pred             CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHH----HHHHHhh--CCCeEEEEECCCCccc
Confidence            6688999999543211     10 0112357899999998865443222    2333322  2455799999998654

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=98.28  E-value=4.2e-07  Score=72.74  Aligned_cols=64  Identities=23%  Similarity=0.130  Sum_probs=39.5

Q ss_pred             EEEEEEEcCCCcccc-----cc-cccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCC-C-EEEEeeCccccc
Q psy15714         71 YDVTLWDTAGQEDYE-----RL-RPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKV-P-IILVGTKADLRS  141 (205)
Q Consensus        71 ~~~~i~D~~g~~~~~-----~~-~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-p-~ivv~nK~Dl~~  141 (205)
                      +.+.|+|+||.....     .+ ....+..+|.+++|+|+.....   .. ..   +..+...+ | ..+|+||.|...
T Consensus       181 ~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~-~~---~~~~~~~~~~i~gvVlnK~D~~~  252 (432)
T 2v3c_C          181 ADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AG-IQ---AKAFKEAVGEIGSIIVTKLDGSA  252 (432)
T ss_dssp             CSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HH-HH---HHHHHTTSCSCEEEEEECSSSCS
T ss_pred             CCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HH-HH---HHHHhhcccCCeEEEEeCCCCcc
Confidence            568899999965421     11 0122346899999999876532   22 12   22222346 6 889999999754

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.27  E-value=3.7e-07  Score=68.36  Aligned_cols=93  Identities=10%  Similarity=-0.049  Sum_probs=59.3

Q ss_pred             cCCCccc-ccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhcccc
Q psy15714         78 TAGQEDY-ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDL  156 (205)
Q Consensus        78 ~~g~~~~-~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~  156 (205)
                      +|||... .......+.++|+++.|+|+.++.+.....  + .    .. ++|.++|+||+|+.+..             
T Consensus         4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~--l-~----ll-~k~~iivlNK~DL~~~~-------------   62 (262)
T 3cnl_A            4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG--V-D----FS-RKETIILLNKVDIADEK-------------   62 (262)
T ss_dssp             -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT--S-C----CT-TSEEEEEEECGGGSCHH-------------
T ss_pred             CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH--H-H----hc-CCCcEEEEECccCCCHH-------------
Confidence            5777532 223345788999999999999886654321  1 1    12 89999999999997632             


Q ss_pred             ccHHHHHHHHHHcCCceEEEcccCCCCCHHHHHHHHHH
Q psy15714        157 VSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR  194 (205)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~  194 (205)
                      . .+....+.+..+.. + .+||.++.|+++++..+..
T Consensus        63 ~-~~~~~~~~~~~g~~-v-~iSa~~~~gi~~L~~~l~~   97 (262)
T 3cnl_A           63 T-TKKWVEFFKKQGKR-V-ITTHKGEPRKVLLKKLSFD   97 (262)
T ss_dssp             H-HHHHHHHHHHTTCC-E-EECCTTSCHHHHHHHHCCC
T ss_pred             H-HHHHHHHHHHcCCe-E-EEECCCCcCHHHHHHHHHH
Confidence            1 11222333445665 6 9999999999999877643

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=98.23  E-value=1.6e-06  Score=71.80  Aligned_cols=63  Identities=24%  Similarity=0.173  Sum_probs=39.7

Q ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEE------CCEEEEEEEEEcCCCcc
Q psy15714         20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITV------DNKTYDVTLWDTAGQED   83 (205)
Q Consensus        20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~------~~~~~~~~i~D~~g~~~   83 (205)
                      .....+|+|+|.+++|||||+|++.+....-...++.... +..++.      ......+.++||||-..
T Consensus        35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~-T~gi~~~~~~~~~~~~~~i~LiDTpGi~~  103 (592)
T 1f5n_A           35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSH-TKGIWMWCVPHPKKPGHILVLLDTEGLGD  103 (592)
T ss_dssp             CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCC-CCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred             cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCc-eeEEEEeecccccCCCceEEEecCCCcCc
Confidence            3466899999999999999999999876321222222111 111111      11224588899999654

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=98.12  E-value=7.6e-08  Score=78.02  Aligned_cols=109  Identities=14%  Similarity=0.003  Sum_probs=62.8

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcc--ccccc--------c
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQED--YERLR--------P   89 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~--~~~~~--------~   89 (205)
                      ...++|+++|.+|+||||+.+++....... ..++..... .......+......+||..|.+.  .+..+        .
T Consensus        37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~-~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~  115 (469)
T 1bif_A           37 NCPTLIVMVGLPARGKTYISKKLTRYLNFI-GVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVR  115 (469)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHHhcc-CCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence            456799999999999999998887542111 111111110 00000111113356789888733  23322        3


Q ss_pred             cCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEe
Q psy15714         90 MSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVG  134 (205)
Q Consensus        90 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~  134 (205)
                      .++....+.++|+|.++. +..... .|+..+...  ..+++++-
T Consensus       116 ~~l~~~~G~~vV~D~tn~-~~~~R~-~~~~~~~~~--~~~vv~l~  156 (469)
T 1bif_A          116 KFLSEEGGHVAVFDATNT-TRERRA-MIFNFGEQN--GYKTFFVE  156 (469)
T ss_dssp             HHHHTTCCSEEEEESCCC-SHHHHH-HHHHHHHHH--TCEEEEEE
T ss_pred             HHHHhCCCCEEEEeCCCC-CHHHHH-HHHHHHHhc--CCcEEEEE
Confidence            455567888999999987 444444 777777665  44555444

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=98.01  E-value=5.5e-06  Score=69.20  Aligned_cols=23  Identities=22%  Similarity=0.372  Sum_probs=20.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENK   47 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~   47 (205)
                      .++|+|++|+|||||++.+.+-.
T Consensus        47 ~iaIvG~nGsGKSTLL~~I~Gl~   69 (608)
T 3szr_A           47 AIAVIGDQSSGKSSVLEALSGVA   69 (608)
T ss_dssp             CEECCCCTTSCHHHHHHHHHSCC
T ss_pred             eEEEECCCCChHHHHHHHHhCCC
Confidence            49999999999999999998764

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=97.96  E-value=7.9e-06  Score=65.23  Aligned_cols=65  Identities=17%  Similarity=0.156  Sum_probs=39.0

Q ss_pred             EEEEEEEcCCCcc--ccc-----ccc-cCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCccccc
Q psy15714         71 YDVTLWDTAGQED--YER-----LRP-MSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS  141 (205)
Q Consensus        71 ~~~~i~D~~g~~~--~~~-----~~~-~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  141 (205)
                      +.+.|.|+||...  ...     +.. ...-..+.+++|+|+.......+    ....+...  -.+..||+||.|...
T Consensus       180 ~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~----~a~~f~~~--~~~~gVIlTKlD~~a  252 (433)
T 3kl4_A          180 MDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYD----LASRFHQA--SPIGSVIITKMDGTA  252 (433)
T ss_dssp             CSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHH----HHHHHHHH--CSSEEEEEECGGGCS
T ss_pred             CCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHH----HHHHHhcc--cCCcEEEEecccccc
Confidence            5678999999643  111     000 01224689999999876543322    22333333  346789999999764

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.90  E-value=9.3e-05  Score=57.62  Aligned_cols=87  Identities=20%  Similarity=0.197  Sum_probs=56.2

Q ss_pred             CcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcC
Q psy15714         91 SYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIK  170 (205)
Q Consensus        91 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (205)
                      .+.++|.+++|... ++..-......++......  ++|.++|+||+||.+...           ....++........+
T Consensus       127 i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~~--~~~~iivlNK~DL~~~~~-----------~~~~~~~~~~y~~~G  192 (358)
T 2rcn_A          127 IAANIDQIVIVSAI-LPELSLNIIDRYLVGCETL--QVEPLIVLNKIDLLDDEG-----------MDFVNEQMDIYRNIG  192 (358)
T ss_dssp             EEECCCEEEEEEES-TTTCCHHHHHHHHHHHHHH--TCEEEEEEECGGGCCHHH-----------HHHHHHHHHHHHTTT
T ss_pred             HHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHhc--CCCEEEEEECccCCCchh-----------HHHHHHHHHHHHhCC
Confidence            46889999988665 4543333333555555555  889999999999976421           000111222233456


Q ss_pred             CceEEEcccCCCCCHHHHHHHH
Q psy15714        171 AAEYLECSAKLNEGLDQVFIAA  192 (205)
Q Consensus       171 ~~~~~~~Sa~~~~~i~~~~~~i  192 (205)
                      .. ++.+||.++.|++++...+
T Consensus       193 ~~-v~~~Sa~~~~gl~~L~~~~  213 (358)
T 2rcn_A          193 YR-VLMVSSHTQDGLKPLEEAL  213 (358)
T ss_dssp             CC-EEECBTTTTBTHHHHHHHH
T ss_pred             Cc-EEEEecCCCcCHHHHHHhc
Confidence            65 8999999999999887643

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=97.89  E-value=1.2e-05  Score=61.19  Aligned_cols=91  Identities=15%  Similarity=0.103  Sum_probs=52.5

Q ss_pred             EEEEEEEcCCCcc--ccc-ccc-----cCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCC-EEEEeeCccccc
Q psy15714         71 YDVTLWDTAGQED--YER-LRP-----MSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVP-IILVGTKADLRS  141 (205)
Q Consensus        71 ~~~~i~D~~g~~~--~~~-~~~-----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~  141 (205)
                      +.+.|+||||...  ... +..     .....+|.+++|.|+.....   .. .....+..   ..| ..+|.||.|...
T Consensus       181 ~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~---~~-~~~~~~~~---~~~i~gvVlnk~D~~~  253 (297)
T 1j8m_F          181 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQK---AY-DLASKFNQ---ASKIGTIIITKMDGTA  253 (297)
T ss_dssp             CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG---HH-HHHHHHHH---TCTTEEEEEECGGGCT
T ss_pred             CCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHH---HH-HHHHHHHh---hCCCCEEEEeCCCCCc
Confidence            5688999999765  211 111     12346899999999864322   22 12222322   466 779999999753


Q ss_pred             CchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCCCCCHHH
Q psy15714        142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQ  187 (205)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  187 (205)
                      ..                ..+..+....+.+ +..++  .|+++++
T Consensus       254 ~~----------------g~~~~~~~~~~~p-i~~i~--~Ge~v~d  280 (297)
T 1j8m_F          254 KG----------------GGALSAVAATGAT-IKFIG--TGEKIDE  280 (297)
T ss_dssp             TH----------------HHHHHHHHTTTCC-EEEEE--CSSSTTC
T ss_pred             ch----------------HHHHHHHHHHCcC-EEEEe--CCCChhh
Confidence            21                2334555566655 55544  4666543

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=97.56  E-value=9.3e-05  Score=59.29  Aligned_cols=26  Identities=19%  Similarity=0.158  Sum_probs=22.7

Q ss_pred             cceeeEEEEECCCCCCHHHHHHHHhc
Q psy15714         20 VHKALKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        20 ~~~~~ki~v~G~~~~GKstli~~~~~   45 (205)
                      ..+..-|.|+|++++|||||+|++++
T Consensus        64 ~~~v~vVsV~G~~~~GKStLLN~llg   89 (447)
T 3q5d_A           64 DKEVVAVSVAGAFRKGKSFLMDFMLR   89 (447)
T ss_dssp             TSBEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCceEEEEEECCCCCcHHHHHHHHhh
Confidence            34667799999999999999999985

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.53  E-value=5.3e-05  Score=53.20  Aligned_cols=23  Identities=35%  Similarity=0.476  Sum_probs=19.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~   46 (205)
                      .+++++|++|+|||||++.+.+-
T Consensus         1 ~~i~l~G~nGsGKTTLl~~l~g~   23 (178)
T 1ye8_A            1 MKIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            37899999999999999877653

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.32  E-value=0.00012  Score=51.29  Aligned_cols=22  Identities=18%  Similarity=0.208  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~   46 (205)
                      .++++|++|+|||||++.+.+.
T Consensus         7 ~i~i~GpsGsGKSTL~~~L~~~   28 (180)
T 1kgd_A            7 TLVLLGAHGVGRRHIKNTLITK   28 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            6899999999999999988763

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=97.28  E-value=0.00014  Score=51.83  Aligned_cols=21  Identities=29%  Similarity=0.284  Sum_probs=19.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q psy15714         25 KVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~   45 (205)
                      .++|+|++|+|||||++.+.+
T Consensus         6 ~i~lvGpsGaGKSTLl~~L~~   26 (198)
T 1lvg_A            6 PVVLSGPSGAGKSTLLKKLFQ   26 (198)
T ss_dssp             CEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            589999999999999988875

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=97.27  E-value=0.00014  Score=50.67  Aligned_cols=20  Identities=25%  Similarity=0.326  Sum_probs=17.7

Q ss_pred             EEEEECCCCCCHHHHHHHHh
Q psy15714         25 KVTTVGDGMVGKTCLLITHT   44 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~   44 (205)
                      -++++|++|+|||||++.+.
T Consensus        11 i~~l~G~nGsGKSTl~~~~~   30 (171)
T 4gp7_A           11 LVVLIGSSGSGKSTFAKKHF   30 (171)
T ss_dssp             EEEEECCTTSCHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHc
Confidence            57999999999999999654

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=97.20  E-value=0.00021  Score=50.30  Aligned_cols=23  Identities=13%  Similarity=0.016  Sum_probs=20.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~   46 (205)
                      -.++++|++|+|||||++.+.+.
T Consensus        10 ~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A           10 NILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhc
Confidence            36899999999999999998775

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=97.20  E-value=0.0002  Score=51.03  Aligned_cols=22  Identities=18%  Similarity=0.123  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~   46 (205)
                      -++++|++|+|||||++.+.+.
T Consensus         9 ii~l~Gp~GsGKSTl~~~L~~~   30 (205)
T 3tr0_A            9 LFIISAPSGAGKTSLVRALVKA   30 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHhh
Confidence            5899999999999999988764

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=97.17  E-value=0.00022  Score=51.16  Aligned_cols=22  Identities=27%  Similarity=0.330  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~   46 (205)
                      -++++|++|+|||||++.+.+-
T Consensus        22 i~~l~GpnGsGKSTLl~~l~gl   43 (207)
T 1znw_A           22 VVVLSGPSAVGKSTVVRCLRER   43 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            5899999999999999988764

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=97.16  E-value=0.00023  Score=51.69  Aligned_cols=23  Identities=13%  Similarity=0.091  Sum_probs=20.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~   46 (205)
                      --++|+|++|+|||||++.+.+.
T Consensus        17 ~ii~l~GpsGsGKSTLlk~L~g~   39 (219)
T 1s96_A           17 TLYIVSAPSGAGKSSLIQALLKT   39 (219)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhcc
Confidence            36899999999999999988764

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=97.12  E-value=0.00028  Score=48.48  Aligned_cols=24  Identities=29%  Similarity=0.159  Sum_probs=20.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCC
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTENK   47 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~~   47 (205)
                      -.++++|+.|+|||||++.+.+..
T Consensus        34 e~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           34 IMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhC
Confidence            368999999999999999888754

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=97.10  E-value=0.00028  Score=51.11  Aligned_cols=22  Identities=23%  Similarity=0.280  Sum_probs=19.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~   46 (205)
                      .++|+|++|+|||||++.+.+-
T Consensus        25 ~~~lvGpsGsGKSTLl~~L~g~   46 (218)
T 1z6g_A           25 PLVICGPSGVGKGTLIKKLLNE   46 (218)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            5899999999999999988763

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.09  E-value=0.0003  Score=50.09  Aligned_cols=23  Identities=13%  Similarity=0.203  Sum_probs=20.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~   46 (205)
                      --|+|+|++|+|||||++++...
T Consensus        20 ~~ivl~GPSGaGKsTL~~~L~~~   42 (197)
T 3ney_A           20 KTLVLIGASGVGRSHIKNALLSQ   42 (197)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECcCCCCHHHHHHHHHhh
Confidence            35899999999999999998853

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.09  E-value=0.00033  Score=50.23  Aligned_cols=25  Identities=20%  Similarity=0.057  Sum_probs=20.8

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhc
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~   45 (205)
                      .....|+|+|++|+|||||++.+.+
T Consensus        20 ~~g~~v~I~G~sGsGKSTl~~~l~~   44 (208)
T 3c8u_A           20 PGRQLVALSGAPGSGKSTLSNPLAA   44 (208)
T ss_dssp             CSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3456899999999999999977654

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=97.09  E-value=0.00029  Score=50.57  Aligned_cols=22  Identities=18%  Similarity=0.151  Sum_probs=19.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~   46 (205)
                      -|+++|++|+|||||++.+...
T Consensus        10 ~i~l~GpsGsGKsTl~~~L~~~   31 (208)
T 3tau_A           10 LIVLSGPSGVGKGTVREAVFKD   31 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHhh
Confidence            5899999999999999998865

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=97.09  E-value=0.0015  Score=52.28  Aligned_cols=64  Identities=25%  Similarity=0.219  Sum_probs=38.2

Q ss_pred             EEEEEEEcCCCccccc-ccc-----cCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCE-EEEeeCccccc
Q psy15714         71 YDVTLWDTAGQEDYER-LRP-----MSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPI-ILVGTKADLRS  141 (205)
Q Consensus        71 ~~~~i~D~~g~~~~~~-~~~-----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-ivv~nK~Dl~~  141 (205)
                      +.+.|+||||...... +..     ..+...+.+++|+|+........    ....+..   .+++ -+|+||.|...
T Consensus       184 ~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~~~----~~~~f~~---~l~i~gvVlnK~D~~~  254 (433)
T 2xxa_A          184 YDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAAN----TAKAFNE---ALPLTGVVLTKVDGDA  254 (433)
T ss_dssp             CSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTHHH----HHHHHHH---HSCCCCEEEECTTSSS
T ss_pred             CCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHHHH----HHHHHhc---cCCCeEEEEecCCCCc
Confidence            5688999999654321 111     12346889999999875533222    2222222   3553 47999999754

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.07  E-value=0.00033  Score=49.43  Aligned_cols=21  Identities=24%  Similarity=0.286  Sum_probs=18.9

Q ss_pred             EEEECCCCCCHHHHHHHHhcC
Q psy15714         26 VTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        26 i~v~G~~~~GKstli~~~~~~   46 (205)
                      |+|+||+|+|||||++++...
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~   24 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999998753

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=97.06  E-value=0.00042  Score=48.14  Aligned_cols=22  Identities=18%  Similarity=0.096  Sum_probs=20.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHhc
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~   45 (205)
                      ..|++.|++|+||||+.+.+..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            4689999999999999998886

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.05  E-value=0.00017  Score=54.95  Aligned_cols=24  Identities=25%  Similarity=0.259  Sum_probs=20.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCC
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTENK   47 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~~   47 (205)
                      -.++++|++|+|||||+|.+.+..
T Consensus       174 ~~~~lvG~sG~GKSTLln~L~g~~  197 (307)
T 1t9h_A          174 KTTVFAGQSGVGKSSLLNAISPEL  197 (307)
T ss_dssp             SEEEEEESHHHHHHHHHHHHCC--
T ss_pred             CEEEEECCCCCCHHHHHHHhcccc
Confidence            378999999999999999998653

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=97.04  E-value=0.00033  Score=51.36  Aligned_cols=23  Identities=22%  Similarity=0.144  Sum_probs=19.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENK   47 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~   47 (205)
                      .++++|+.|+|||||++.+.+-.
T Consensus        33 ~~~iiG~nGsGKSTLl~~l~Gl~   55 (235)
T 3tif_A           33 FVSIMGPSGSGKSTMLNIIGCLD   55 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            57999999999999999877643

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=97.02  E-value=0.00037  Score=49.06  Aligned_cols=21  Identities=19%  Similarity=0.102  Sum_probs=19.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q psy15714         25 KVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~   45 (205)
                      .++++|++|+|||||++.+.+
T Consensus         4 ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            4 LYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            578999999999999999875

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.02  E-value=0.00038  Score=48.13  Aligned_cols=23  Identities=17%  Similarity=0.125  Sum_probs=19.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~   46 (205)
                      ..|+++|++|+||||+.+.+.+.
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~~   27 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQQ   27 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            36999999999999999887653

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=97.02  E-value=0.00056  Score=48.66  Aligned_cols=25  Identities=12%  Similarity=0.061  Sum_probs=20.9

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhc
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~   45 (205)
                      .+...|++.|.+|+||||+.+.+..
T Consensus        13 ~~~~~I~l~G~~GsGKsT~~~~L~~   37 (203)
T 1ukz_A           13 DQVSVIFVLGGPGAGKGTQCEKLVK   37 (203)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3446899999999999999988764

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=97.00  E-value=0.00045  Score=50.87  Aligned_cols=22  Identities=18%  Similarity=0.175  Sum_probs=20.2

Q ss_pred             eeEEEEECCCCCCHHHHHHHHh
Q psy15714         23 ALKVTTVGDGMVGKTCLLITHT   44 (205)
Q Consensus        23 ~~ki~v~G~~~~GKstli~~~~   44 (205)
                      ...|+|+|++|+|||||++.+.
T Consensus        27 ~~~i~l~G~~GsGKSTl~k~La   48 (246)
T 2bbw_A           27 LLRAVILGPPGSGKGTVCQRIA   48 (246)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            4589999999999999999888

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=96.99  E-value=0.00042  Score=49.83  Aligned_cols=22  Identities=18%  Similarity=0.125  Sum_probs=19.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHhc
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~   45 (205)
                      ++|+|+|++||||||+.+.+..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3fb4_A            1 MNIVLMGLPGAGKGTQAEQIIE   22 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999988753

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=96.99  E-value=0.00045  Score=47.64  Aligned_cols=20  Identities=15%  Similarity=-0.019  Sum_probs=18.4

Q ss_pred             eEEEEECCCCCCHHHHHHHH
Q psy15714         24 LKVTTVGDGMVGKTCLLITH   43 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~   43 (205)
                      +.|+++|++||||||+.+.+
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            36899999999999999988

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=96.99  E-value=0.00042  Score=49.53  Aligned_cols=25  Identities=20%  Similarity=0.239  Sum_probs=20.7

Q ss_pred             eeeEEEEECCCCCCHHHHHHHHhcC
Q psy15714         22 KALKVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        22 ~~~ki~v~G~~~~GKstli~~~~~~   46 (205)
                      ...-|+++|++|||||||++.+...
T Consensus        11 ~~~~i~l~G~sGsGKsTl~~~L~~~   35 (204)
T 2qor_A           11 RIPPLVVCGPSGVGKGTLIKKVLSE   35 (204)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHh
Confidence            3346899999999999999988753

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=96.98  E-value=0.00047  Score=47.54  Aligned_cols=21  Identities=10%  Similarity=0.034  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q psy15714         25 KVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~   45 (205)
                      .|+++|++|+||||+.+.+..
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~   23 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSK   23 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999988764

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=96.98  E-value=0.00053  Score=48.79  Aligned_cols=26  Identities=19%  Similarity=0.204  Sum_probs=22.0

Q ss_pred             cceeeEEEEECCCCCCHHHHHHHHhc
Q psy15714         20 VHKALKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        20 ~~~~~ki~v~G~~~~GKstli~~~~~   45 (205)
                      ....+.|+++|.+|+||||+.+.+..
T Consensus        17 ~~~~~~I~l~G~~GsGKST~a~~La~   42 (201)
T 2cdn_A           17 RGSHMRVLLLGPPGAGKGTQAVKLAE   42 (201)
T ss_dssp             CCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            44557899999999999999988764

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=96.97  E-value=0.00045  Score=49.71  Aligned_cols=22  Identities=18%  Similarity=0.063  Sum_probs=19.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHhc
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~   45 (205)
                      ++|+|+|++||||||+.+.+..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3dl0_A            1 MNLVLMGLPGAGKGTQGERIVE   22 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999988854

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=96.97  E-value=0.00038  Score=50.64  Aligned_cols=23  Identities=26%  Similarity=0.226  Sum_probs=19.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENK   47 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~   47 (205)
                      .++++|+.|+|||||++.+.+-.
T Consensus        32 ~~~iiG~nGsGKSTLl~~l~Gl~   54 (224)
T 2pcj_A           32 FVSIIGASGSGKSTLLYILGLLD   54 (224)
T ss_dssp             EEEEEECTTSCHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57899999999999999877643

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=96.97  E-value=0.00051  Score=50.56  Aligned_cols=23  Identities=17%  Similarity=0.092  Sum_probs=20.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENK   47 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~   47 (205)
                      .++++|+.|+|||||++.+.+-.
T Consensus        26 ~~~liG~nGsGKSTLl~~l~Gl~   48 (240)
T 2onk_A           26 YCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999887653

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=96.96  E-value=0.00045  Score=49.18  Aligned_cols=23  Identities=22%  Similarity=0.219  Sum_probs=19.8

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhc
Q psy15714         23 ALKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        23 ~~ki~v~G~~~~GKstli~~~~~   45 (205)
                      .-.|+++|++|+|||||++.+.+
T Consensus        29 g~~i~l~G~~GsGKSTl~~~L~~   51 (200)
T 4eun_A           29 TRHVVVMGVSGSGKTTIAHGVAD   51 (200)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            34789999999999999988764

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=96.96  E-value=0.00044  Score=49.23  Aligned_cols=24  Identities=25%  Similarity=0.213  Sum_probs=20.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCC
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTENK   47 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~~   47 (205)
                      ..|+++|++||||||+++.+.+.-
T Consensus         7 ~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            7 LLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhh
Confidence            478999999999999999887653

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=96.95  E-value=0.00056  Score=48.05  Aligned_cols=25  Identities=20%  Similarity=0.268  Sum_probs=21.1

Q ss_pred             eeeEEEEECCCCCCHHHHHHHHhcC
Q psy15714         22 KALKVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        22 ~~~ki~v~G~~~~GKstli~~~~~~   46 (205)
                      +..+|+++|.+|+||||+.+.+...
T Consensus         9 ~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            9 KGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHh
Confidence            3458999999999999999877654

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=96.94  E-value=0.00051  Score=49.19  Aligned_cols=24  Identities=25%  Similarity=0.302  Sum_probs=20.2

Q ss_pred             eeeEEEEECCCCCCHHHHHHHHhc
Q psy15714         22 KALKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        22 ~~~ki~v~G~~~~GKstli~~~~~   45 (205)
                      ....|+|+|+.|+|||||++.+.+
T Consensus         5 ~~~~i~i~G~~GsGKSTl~~~l~~   28 (211)
T 3asz_A            5 KPFVIGIAGGTASGKTTLAQALAR   28 (211)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHH
Confidence            335799999999999999987665

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=96.94  E-value=0.00048  Score=49.74  Aligned_cols=23  Identities=35%  Similarity=0.289  Sum_probs=19.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENK   47 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~   47 (205)
                      .++++|+.|+|||||++.+.+-.
T Consensus        37 ~~~iiG~NGsGKSTLlk~l~Gl~   59 (214)
T 1sgw_A           37 VVNFHGPNGIGKTTLLKTISTYL   59 (214)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999887643

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=96.94  E-value=0.00043  Score=48.99  Aligned_cols=21  Identities=38%  Similarity=0.406  Sum_probs=18.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q psy15714         25 KVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~   45 (205)
                      +++++|++|+|||||++.+.+
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g   23 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHh
Confidence            589999999999999987665

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=96.93  E-value=0.00048  Score=51.75  Aligned_cols=23  Identities=22%  Similarity=0.251  Sum_probs=20.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENK   47 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~   47 (205)
                      .++++|+.|+|||||++.+.+-.
T Consensus        36 ~~~iiGpnGsGKSTLl~~l~Gl~   58 (275)
T 3gfo_A           36 VTAILGGNGVGKSTLFQNFNGIL   58 (275)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            57999999999999999887643

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=96.93  E-value=0.00053  Score=49.23  Aligned_cols=22  Identities=14%  Similarity=0.093  Sum_probs=19.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHhc
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~   45 (205)
                      ++|+++|+|||||+|...++..
T Consensus         1 M~Iil~GpPGsGKgTqa~~La~   22 (206)
T 3sr0_A            1 MILVFLGPPGAGKGTQAKRLAK   22 (206)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999877764

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=96.93  E-value=0.00048  Score=51.35  Aligned_cols=23  Identities=17%  Similarity=0.218  Sum_probs=19.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENK   47 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~   47 (205)
                      .++++|+.|+|||||++.+.+-.
T Consensus        34 ~~~liG~nGsGKSTLlk~l~Gl~   56 (262)
T 1b0u_A           34 VISIIGSSGSGKSTFLRCINFLE   56 (262)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57999999999999999887643

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.93  E-value=0.0026  Score=49.20  Aligned_cols=20  Identities=20%  Similarity=0.170  Sum_probs=18.4

Q ss_pred             EEEECCCCCCHHHHHHHHhc
Q psy15714         26 VTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        26 i~v~G~~~~GKstli~~~~~   45 (205)
                      +++.|++|+||||+++.+.+
T Consensus        39 ~ll~Gp~G~GKTtl~~~la~   58 (354)
T 1sxj_E           39 LLLYGPNGTGKKTRCMALLE   58 (354)
T ss_dssp             EEEECSTTSSHHHHHHTHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            89999999999999987766

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=96.92  E-value=0.00055  Score=50.25  Aligned_cols=22  Identities=32%  Similarity=0.333  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~   46 (205)
                      .++++|+.|+|||||++.+.+-
T Consensus        33 ~~~i~G~nGsGKSTLl~~l~Gl   54 (237)
T 2cbz_A           33 LVAVVGQVGCGKSSLLSALLAE   54 (237)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6899999999999999988764

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=96.90  E-value=0.00073  Score=46.87  Aligned_cols=22  Identities=14%  Similarity=0.067  Sum_probs=19.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHhc
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~   45 (205)
                      ..|+++|++|+||||+.+.+.+
T Consensus         9 ~~i~l~G~~GsGKSTl~~~l~~   30 (175)
T 1knq_A            9 HIYVLMGVSGSGKSAVASEVAH   30 (175)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHHH
Confidence            4689999999999999987764

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=96.90  E-value=0.00059  Score=47.86  Aligned_cols=22  Identities=23%  Similarity=0.066  Sum_probs=19.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHhc
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~   45 (205)
                      ..|++.|++||||||+.+.+..
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999987754

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=96.90  E-value=0.00059  Score=50.26  Aligned_cols=22  Identities=14%  Similarity=0.105  Sum_probs=19.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~   46 (205)
                      .++++|+.|+|||||++.+.+-
T Consensus        30 ~~~i~G~nGsGKSTLl~~l~Gl   51 (243)
T 1mv5_A           30 IIAFAGPSGGGKSTIFSLLERF   51 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6899999999999999988764

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=96.90  E-value=0.00059  Score=53.14  Aligned_cols=23  Identities=26%  Similarity=0.200  Sum_probs=21.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENK   47 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~   47 (205)
                      .++++|++|+|||||++.+.+..
T Consensus       217 ~~~lvG~sG~GKSTLln~L~g~~  239 (358)
T 2rcn_A          217 ISIFAGQSGVGKSSLLNALLGLQ  239 (358)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCS
T ss_pred             EEEEECCCCccHHHHHHHHhccc
Confidence            68999999999999999998754

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=96.89  E-value=0.00061  Score=49.73  Aligned_cols=23  Identities=26%  Similarity=0.299  Sum_probs=20.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENK   47 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~   47 (205)
                      .++++|+.|+|||||++.+.+-.
T Consensus        36 ~~~i~G~nGsGKSTLl~~l~Gl~   58 (229)
T 2pze_A           36 LLAVAGSTGAGKTSLLMMIMGEL   58 (229)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            67999999999999999887653

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=96.89  E-value=0.0007  Score=47.61  Aligned_cols=23  Identities=26%  Similarity=0.187  Sum_probs=19.9

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhc
Q psy15714         23 ALKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        23 ~~ki~v~G~~~~GKstli~~~~~   45 (205)
                      ...|++.|.+||||||+.+.+..
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~   25 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVE   25 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999987754

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=96.89  E-value=0.0006  Score=50.38  Aligned_cols=23  Identities=22%  Similarity=0.124  Sum_probs=20.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENK   47 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~   47 (205)
                      .++++|+.|+|||||++.+.+-.
T Consensus        37 ~~~i~G~nGsGKSTLl~~l~Gl~   59 (247)
T 2ff7_A           37 VIGIVGRSGSGKSTLTKLIQRFY   59 (247)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            68999999999999999877653

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=96.89  E-value=0.00075  Score=47.22  Aligned_cols=23  Identities=17%  Similarity=0.083  Sum_probs=20.1

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhc
Q psy15714         23 ALKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        23 ~~ki~v~G~~~~GKstli~~~~~   45 (205)
                      ...|+++|.+||||||+.+.+..
T Consensus         4 g~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            4 GQAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999988764

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=96.89  E-value=0.0006  Score=50.68  Aligned_cols=23  Identities=22%  Similarity=0.153  Sum_probs=20.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENK   47 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~   47 (205)
                      .++++|+.|+|||||++.+.+-.
T Consensus        35 ~~~liG~nGsGKSTLlk~l~Gl~   57 (257)
T 1g6h_A           35 VTLIIGPNGSGKSTLINVITGFL   57 (257)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57999999999999999887653

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=96.89  E-value=0.0006  Score=50.95  Aligned_cols=23  Identities=30%  Similarity=0.283  Sum_probs=20.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENK   47 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~   47 (205)
                      .++++|+.|+|||||++.+.+-.
T Consensus        39 ~~~liG~nGsGKSTLl~~l~Gl~   61 (266)
T 4g1u_C           39 MVAIIGPNGAGKSTLLRLLTGYL   61 (266)
T ss_dssp             EEEEECCTTSCHHHHHHHHTSSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            57899999999999999887653

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=96.88  E-value=0.00047  Score=48.13  Aligned_cols=24  Identities=33%  Similarity=0.349  Sum_probs=20.0

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcC
Q psy15714         23 ALKVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        23 ~~ki~v~G~~~~GKstli~~~~~~   46 (205)
                      .-.++++|++|+|||||++.+.+.
T Consensus        38 g~~~~l~G~~G~GKTtL~~~i~~~   61 (180)
T 3ec2_A           38 GKGLTFVGSPGVGKTHLAVATLKA   61 (180)
T ss_dssp             CCEEEECCSSSSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            346899999999999999877653

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=96.88  E-value=0.00069  Score=47.07  Aligned_cols=23  Identities=13%  Similarity=0.122  Sum_probs=20.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~   46 (205)
                      ..|++.|++|+||||+.+.+...
T Consensus         4 ~~i~l~G~~GsGKST~a~~La~~   26 (178)
T 1qhx_A            4 RMIILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            36899999999999999888763

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=96.88  E-value=0.00063  Score=50.75  Aligned_cols=22  Identities=23%  Similarity=0.203  Sum_probs=19.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~   46 (205)
                      .++++|+.|+|||||++.+.+-
T Consensus        52 i~~liG~NGsGKSTLlk~l~Gl   73 (263)
T 2olj_A           52 VVVVIGPSGSGKSTFLRCLNLL   73 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Confidence            5789999999999999987764

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=96.88  E-value=0.0005  Score=49.44  Aligned_cols=22  Identities=27%  Similarity=0.295  Sum_probs=19.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~   46 (205)
                      .++++|+.|+|||||++.+.+-
T Consensus        24 ~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           24 IVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             EEEEECCTTSSTTHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999888754

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=96.87  E-value=0.00076  Score=49.65  Aligned_cols=25  Identities=12%  Similarity=0.046  Sum_probs=21.8

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhc
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~   45 (205)
                      .+.++|+++|++||||||+.+.+..
T Consensus        27 ~~~~~I~l~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           27 KPDGRYIFLGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3567999999999999999988864

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=96.86  E-value=0.00067  Score=50.20  Aligned_cols=23  Identities=26%  Similarity=0.271  Sum_probs=20.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENK   47 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~   47 (205)
                      .++++|+.|+|||||++.+.+-.
T Consensus        28 ~~~liG~NGsGKSTLlk~l~Gl~   50 (249)
T 2qi9_C           28 ILHLVGPNGAGKSTLLARMAGMT   50 (249)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            57999999999999999877653

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=96.86  E-value=0.0007  Score=47.62  Aligned_cols=23  Identities=22%  Similarity=0.222  Sum_probs=20.0

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhc
Q psy15714         23 ALKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        23 ~~ki~v~G~~~~GKstli~~~~~   45 (205)
                      ...|+++|.+|+||||+.+.+..
T Consensus         5 ~~~I~l~G~~GsGKST~~~~L~~   27 (193)
T 2rhm_A            5 PALIIVTGHPATGKTTLSQALAT   27 (193)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999988764

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=96.86  E-value=0.00061  Score=48.49  Aligned_cols=22  Identities=18%  Similarity=0.134  Sum_probs=19.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHhc
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~   45 (205)
                      ..|+++|.+|+||||+.+.+..
T Consensus        19 ~~I~l~G~~GsGKSTla~~L~~   40 (202)
T 3t61_A           19 GSIVVMGVSGSGKSSVGEAIAE   40 (202)
T ss_dssp             SCEEEECSTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999988764

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=96.85  E-value=0.0007  Score=48.13  Aligned_cols=23  Identities=22%  Similarity=0.163  Sum_probs=19.9

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhc
Q psy15714         23 ALKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        23 ~~ki~v~G~~~~GKstli~~~~~   45 (205)
                      .-.|+++|++|+||||+.+.+..
T Consensus        25 ~~~i~l~G~~GsGKsTl~~~La~   47 (199)
T 3vaa_A           25 MVRIFLTGYMGAGKTTLGKAFAR   47 (199)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHH
Confidence            34799999999999999987764

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=96.85  E-value=0.00067  Score=48.11  Aligned_cols=21  Identities=19%  Similarity=0.278  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q psy15714         25 KVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~   45 (205)
                      .|++.|.+||||||+.+.+..
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~   22 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISK   22 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHH
Confidence            689999999999999987765

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=96.85  E-value=0.00061  Score=47.51  Aligned_cols=23  Identities=26%  Similarity=0.159  Sum_probs=19.9

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhc
Q psy15714         23 ALKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        23 ~~ki~v~G~~~~GKstli~~~~~   45 (205)
                      ...|+++|.+|+||||+.+.+..
T Consensus        11 ~~~i~i~G~~GsGKst~~~~l~~   33 (180)
T 3iij_A           11 LPNILLTGTPGVGKTTLGKELAS   33 (180)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEeCCCCCHHHHHHHHHH
Confidence            45789999999999999988763

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=96.85  E-value=0.00081  Score=47.99  Aligned_cols=23  Identities=13%  Similarity=0.086  Sum_probs=20.2

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhc
Q psy15714         23 ALKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        23 ~~ki~v~G~~~~GKstli~~~~~   45 (205)
                      ...|++.|.+||||||+.+.+..
T Consensus         4 ~~~I~i~G~~GsGKsT~~~~L~~   26 (213)
T 2plr_A            4 GVLIAFEGIDGSGKSSQATLLKD   26 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHH
Confidence            46899999999999999988765

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.85  E-value=0.00068  Score=49.87  Aligned_cols=23  Identities=30%  Similarity=0.221  Sum_probs=20.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENK   47 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~   47 (205)
                      .++++|+.|+|||||++.+.+-.
T Consensus        34 ~~~l~G~nGsGKSTLl~~l~Gl~   56 (240)
T 1ji0_A           34 IVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57999999999999999887643

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.84  E-value=0.0007  Score=50.30  Aligned_cols=23  Identities=22%  Similarity=0.107  Sum_probs=20.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENK   47 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~   47 (205)
                      .++++|+.|+|||||++.+.+-.
T Consensus        43 i~~l~G~NGsGKSTLlk~l~Gl~   65 (256)
T 1vpl_A           43 IFGLIGPNGAGKTTTLRIISTLI   65 (256)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57999999999999999887653

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=96.84  E-value=0.00069  Score=51.00  Aligned_cols=23  Identities=30%  Similarity=0.176  Sum_probs=20.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENK   47 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~   47 (205)
                      .++++|+.|+|||||++.+.+-.
T Consensus        49 ~~~liG~NGsGKSTLlk~l~Gl~   71 (279)
T 2ihy_A           49 KWILYGLNGAGKTTLLNILNAYE   71 (279)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            57999999999999999887643

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=96.83  E-value=0.00073  Score=47.44  Aligned_cols=21  Identities=29%  Similarity=0.203  Sum_probs=18.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q psy15714         25 KVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~   45 (205)
                      .|+|.|.+|+||||+.+.+..
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~   23 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999977764

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=96.83  E-value=0.00071  Score=50.38  Aligned_cols=22  Identities=18%  Similarity=0.104  Sum_probs=19.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~   46 (205)
                      .++++|+.|+|||||++.+.+-
T Consensus        48 ~~~i~G~nGsGKSTLl~~l~Gl   69 (260)
T 2ghi_A           48 TCALVGHTGSGKSTIAKLLYRF   69 (260)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            6899999999999999988764

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=96.83  E-value=0.00064  Score=48.38  Aligned_cols=22  Identities=18%  Similarity=0.218  Sum_probs=19.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHhc
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~   45 (205)
                      .+|+|+|.+|+||||+.+.+.+
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            3799999999999999988876

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=96.82  E-value=0.00076  Score=49.91  Aligned_cols=22  Identities=18%  Similarity=0.122  Sum_probs=20.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~   46 (205)
                      .++++|+.|+|||||++.+.+-
T Consensus        31 ~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           31 VHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5799999999999999988875

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=96.82  E-value=0.00077  Score=50.38  Aligned_cols=22  Identities=23%  Similarity=0.188  Sum_probs=20.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~   46 (205)
                      .++++|+.|+|||||++.+.+-
T Consensus        48 ~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           48 VHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5789999999999999988875

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=96.81  E-value=0.00076  Score=48.68  Aligned_cols=23  Identities=17%  Similarity=0.232  Sum_probs=20.1

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhc
Q psy15714         23 ALKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        23 ~~ki~v~G~~~~GKstli~~~~~   45 (205)
                      .++|+++|.+|+||||+.+.+..
T Consensus         4 ~~~I~l~G~~GsGKsT~a~~La~   26 (220)
T 1aky_A            4 SIRMVLIGPPGAGKGTQAPNLQE   26 (220)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            36899999999999999987764

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.81  E-value=0.00081  Score=49.70  Aligned_cols=26  Identities=12%  Similarity=0.157  Sum_probs=21.0

Q ss_pred             cceeeEEEEECCCCCCHHHHHHHHhc
Q psy15714         20 VHKALKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        20 ~~~~~ki~v~G~~~~GKstli~~~~~   45 (205)
                      ..+.+.|+|.|.+|+||||+.+.+..
T Consensus        19 ~~~~~iI~I~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A           19 GGEPFLIGVSGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             --CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHH
Confidence            34557899999999999999987755

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=96.81  E-value=0.00067  Score=48.81  Aligned_cols=22  Identities=18%  Similarity=0.259  Sum_probs=19.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHhc
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~   45 (205)
                      ++|++.|.+|+||||+.+.+..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (214)
T 1e4v_A            1 MRIILLGAPVAGKGTQAQFIME   22 (214)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999987764

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=96.80  E-value=0.00071  Score=50.41  Aligned_cols=22  Identities=14%  Similarity=0.144  Sum_probs=19.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHhc
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~   45 (205)
                      =.++|+|+.|+|||||++.+.+
T Consensus        26 ~~v~i~Gp~GsGKSTll~~l~g   47 (261)
T 2eyu_A           26 GLILVTGPTGSGKSTTIASMID   47 (261)
T ss_dssp             EEEEEECSTTCSHHHHHHHHHH
T ss_pred             CEEEEECCCCccHHHHHHHHHH
Confidence            3689999999999999988765

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=96.80  E-value=0.00078  Score=50.49  Aligned_cols=23  Identities=17%  Similarity=0.089  Sum_probs=20.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENK   47 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~   47 (205)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        47 ~~~i~G~nGsGKSTLlk~l~Gl~   69 (271)
T 2ixe_A           47 VTALVGPNGSGKSTVAALLQNLY   69 (271)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57999999999999999877653

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=96.79  E-value=0.00076  Score=51.36  Aligned_cols=22  Identities=18%  Similarity=0.140  Sum_probs=19.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHhc
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~   45 (205)
                      =.++|+|++|+|||||++.+.+
T Consensus       127 e~vaIvGpsGsGKSTLl~lL~g  148 (305)
T 2v9p_A          127 NCLAFIGPPNTGKSMLCNSLIH  148 (305)
T ss_dssp             SEEEEECSSSSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCcHHHHHHHHhh
Confidence            3789999999999999987663

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=96.78  E-value=0.00081  Score=49.86  Aligned_cols=23  Identities=22%  Similarity=0.205  Sum_probs=20.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENK   47 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~   47 (205)
                      .++++|+.|+|||||++.+.+-.
T Consensus        33 ~~~l~G~nGsGKSTLl~~l~Gl~   55 (253)
T 2nq2_C           33 ILAVLGQNGCGKSTLLDLLLGIH   55 (253)
T ss_dssp             EEEEECCSSSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57999999999999999887653

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=96.78  E-value=0.00086  Score=48.94  Aligned_cols=24  Identities=17%  Similarity=0.176  Sum_probs=20.6

Q ss_pred             eeeEEEEECCCCCCHHHHHHHHhc
Q psy15714         22 KALKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        22 ~~~ki~v~G~~~~GKstli~~~~~   45 (205)
                      ...+|+++|.+|+||||+.+.+..
T Consensus        15 ~~~~I~l~G~~GsGKsT~a~~La~   38 (233)
T 1ak2_A           15 KGVRAVLLGPPGAGKGTQAPKLAK   38 (233)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            446899999999999999987764

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=96.76  E-value=0.001  Score=47.47  Aligned_cols=22  Identities=27%  Similarity=0.169  Sum_probs=20.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHhc
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~   45 (205)
                      +.|+++|++|+||||+.+.+.+
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998876

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=96.75  E-value=0.00087  Score=50.06  Aligned_cols=22  Identities=23%  Similarity=0.185  Sum_probs=19.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~   46 (205)
                      .++++|+.|+|||||++.+.+-
T Consensus        35 ~~~liG~nGsGKSTLl~~i~Gl   56 (266)
T 2yz2_A           35 CLLVAGNTGSGKSTLLQIVAGL   56 (266)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            6789999999999999987764

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=96.75  E-value=0.0012  Score=47.75  Aligned_cols=24  Identities=21%  Similarity=0.105  Sum_probs=18.6

Q ss_pred             eeeEEEEECCCCCCHHHHHHHHhc
Q psy15714         22 KALKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        22 ~~~ki~v~G~~~~GKstli~~~~~   45 (205)
                      +.--|+++|+|||||+|...++..
T Consensus        28 k~kiI~llGpPGsGKgTqa~~L~~   51 (217)
T 3umf_A           28 KAKVIFVLGGPGSGKGTQCEKLVQ   51 (217)
T ss_dssp             SCEEEEEECCTTCCHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            333466799999999999877764

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=96.75  E-value=0.00091  Score=49.89  Aligned_cols=23  Identities=35%  Similarity=0.297  Sum_probs=20.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENK   47 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~   47 (205)
                      .++++|+.|+|||||++.+.+-.
T Consensus        32 ~~~i~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           32 KVIILGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999887654

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=96.75  E-value=0.00084  Score=47.74  Aligned_cols=25  Identities=20%  Similarity=0.178  Sum_probs=20.5

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhc
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~   45 (205)
                      .....|+++|++|+||||+.+.+.+
T Consensus        23 ~~g~~i~l~G~sGsGKSTl~~~La~   47 (200)
T 3uie_A           23 QKGCVIWVTGLSGSGKSTLACALNQ   47 (200)
T ss_dssp             SCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3446799999999999999877654

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=96.73  E-value=0.00093  Score=46.62  Aligned_cols=23  Identities=22%  Similarity=0.040  Sum_probs=20.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~   46 (205)
                      ..++++|++|+|||||++++...
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~~   29 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIPA   29 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHh
Confidence            36899999999999999988764

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=96.72  E-value=0.00098  Score=48.19  Aligned_cols=22  Identities=27%  Similarity=0.200  Sum_probs=19.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHhc
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~   45 (205)
                      ..|+++|++|+||||+.+.+..
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~   27 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAE   27 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999987764

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=96.71  E-value=0.0011  Score=45.61  Aligned_cols=22  Identities=14%  Similarity=0.158  Sum_probs=19.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHhc
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~   45 (205)
                      ++|++.|.+|+||||+.+.+..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (168)
T 2pt5_A            1 MRIYLIGFMCSGKSTVGSLLSR   22 (168)
T ss_dssp             CEEEEESCTTSCHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999988765

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=96.70  E-value=0.0012  Score=46.28  Aligned_cols=23  Identities=17%  Similarity=0.034  Sum_probs=19.9

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhc
Q psy15714         23 ALKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        23 ~~ki~v~G~~~~GKstli~~~~~   45 (205)
                      ...|++.|.+|+||||+.+.+..
T Consensus         6 ~~~I~l~G~~GsGKsT~~~~L~~   28 (194)
T 1qf9_A            6 PNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999987764

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=96.70  E-value=0.0011  Score=50.14  Aligned_cols=24  Identities=25%  Similarity=0.093  Sum_probs=20.9

Q ss_pred             eeeEEEEECCCCCCHHHHHHHHhc
Q psy15714         22 KALKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        22 ~~~ki~v~G~~~~GKstli~~~~~   45 (205)
                      ...-|++.|++||||||+.+++..
T Consensus        32 ~~~livl~G~sGsGKSTla~~L~~   55 (287)
T 1gvn_B           32 SPTAFLLGGQPGSGKTSLRSAIFE   55 (287)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999998864

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=96.70  E-value=0.0013  Score=50.37  Aligned_cols=26  Identities=15%  Similarity=0.105  Sum_probs=21.8

Q ss_pred             cceeeEEEEECCCCCCHHHHHHHHhc
Q psy15714         20 VHKALKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        20 ~~~~~ki~v~G~~~~GKstli~~~~~   45 (205)
                      .....-|+|+|++|+|||||++.+.+
T Consensus        87 ~~~g~ivgI~G~sGsGKSTL~~~L~g  112 (312)
T 3aez_A           87 RPVPFIIGVAGSVAVGKSTTARVLQA  112 (312)
T ss_dssp             SCCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCchHHHHHHHHHh
Confidence            34556899999999999999987765

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=96.69  E-value=0.00085  Score=48.53  Aligned_cols=23  Identities=26%  Similarity=0.052  Sum_probs=20.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENK   47 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~   47 (205)
                      -++|+|++|+|||||++.+.+..
T Consensus        27 ~~~l~G~nGsGKSTll~~l~g~~   49 (231)
T 4a74_A           27 ITEVFGEFGSGKTQLAHTLAVMV   49 (231)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            68999999999999999988643

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=96.69  E-value=0.00058  Score=49.74  Aligned_cols=23  Identities=13%  Similarity=0.063  Sum_probs=15.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHh-cC
Q psy15714         24 LKVTTVGDGMVGKTCLLITHT-EN   46 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~-~~   46 (205)
                      --++++|++|+|||||++.+. +.
T Consensus        28 ~ii~l~Gp~GsGKSTl~~~L~~~~   51 (231)
T 3lnc_A           28 VILVLSSPSGCGKTTVANKLLEKQ   51 (231)
T ss_dssp             CEEEEECSCC----CHHHHHHC--
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcC
Confidence            368999999999999999988 53

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=96.68  E-value=0.001  Score=48.00  Aligned_cols=22  Identities=14%  Similarity=0.024  Sum_probs=19.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHhc
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~   45 (205)
                      ++|+++|.+|+||||+.+.+..
T Consensus         6 ~~I~l~G~~GsGKsT~a~~La~   27 (217)
T 3be4_A            6 HNLILIGAPGSGKGTQCEFIKK   27 (217)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999987754

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=96.68  E-value=0.00071  Score=47.19  Aligned_cols=23  Identities=30%  Similarity=0.065  Sum_probs=16.0

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhc
Q psy15714         23 ALKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        23 ~~ki~v~G~~~~GKstli~~~~~   45 (205)
                      ...|++.|.+||||||+.+.+..
T Consensus         5 ~~~I~l~G~~GsGKST~a~~La~   27 (183)
T 2vli_A            5 SPIIWINGPFGVGKTHTAHTLHE   27 (183)
T ss_dssp             CCEEEEECCC----CHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999988764

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=96.67  E-value=0.0011  Score=46.26  Aligned_cols=22  Identities=18%  Similarity=0.095  Sum_probs=19.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHhc
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~   45 (205)
                      ..|+++|++|+||||+.+.+..
T Consensus         6 ~~i~l~G~~GsGKst~a~~La~   27 (185)
T 3trf_A            6 TNIYLIGLMGAGKTSVGSQLAK   27 (185)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999988764

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=96.67  E-value=0.001  Score=48.29  Aligned_cols=23  Identities=22%  Similarity=0.189  Sum_probs=20.1

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhc
Q psy15714         23 ALKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        23 ~~ki~v~G~~~~GKstli~~~~~   45 (205)
                      ...|+++|.+||||||+.+.+..
T Consensus         7 ~~~I~l~G~~GsGKsT~a~~La~   29 (227)
T 1zd8_A            7 LLRAVIMGAPGSGKGTVSSRITT   29 (227)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            36799999999999999988763

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=96.66  E-value=0.0012  Score=46.80  Aligned_cols=24  Identities=21%  Similarity=0.140  Sum_probs=20.9

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcC
Q psy15714         23 ALKVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        23 ~~ki~v~G~~~~GKstli~~~~~~   46 (205)
                      ...|++.|.+|+||||+.+.+...
T Consensus         4 ~~~I~l~G~~GsGKsT~~~~L~~~   27 (204)
T 2v54_A            4 GALIVFEGLDKSGKTTQCMNIMES   27 (204)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHH
Confidence            357999999999999999888764

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=96.65  E-value=0.0011  Score=47.96  Aligned_cols=22  Identities=14%  Similarity=0.087  Sum_probs=19.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHhc
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~   45 (205)
                      +.|++.|++||||||+.+.+..
T Consensus         1 m~I~l~G~~GsGKsT~a~~La~   22 (223)
T 2xb4_A            1 MNILIFGPNGSGKGTQGNLVKD   22 (223)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999987764

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=96.65  E-value=0.00096  Score=50.75  Aligned_cols=24  Identities=29%  Similarity=0.182  Sum_probs=21.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCC
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTENK   47 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~~   47 (205)
                      -.++++|++|+|||||++.+.+..
T Consensus       170 eiv~l~G~sG~GKSTll~~l~g~~  193 (301)
T 1u0l_A          170 KISTMAGLSGVGKSSLLNAINPGL  193 (301)
T ss_dssp             SEEEEECSTTSSHHHHHHHHSTTC
T ss_pred             CeEEEECCCCCcHHHHHHHhcccc
Confidence            367999999999999999998754

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=96.65  E-value=0.0013  Score=51.45  Aligned_cols=26  Identities=23%  Similarity=0.385  Sum_probs=21.3

Q ss_pred             ccceeeEEEEECCCCCCHHHHHHHHh
Q psy15714         19 SVHKALKVTTVGDGMVGKTCLLITHT   44 (205)
Q Consensus        19 ~~~~~~ki~v~G~~~~GKstli~~~~   44 (205)
                      ...+..||+++|.+|+|||||++++.
T Consensus        29 ~~~~~~killlG~~~SGKST~~kq~~   54 (362)
T 1zcb_A           29 RSARLVKILLLGAGESGKSTFLKQMR   54 (362)
T ss_dssp             --CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred             HhcCccEEEEECCCCCcHHHHHHHHH
Confidence            34568999999999999999997754

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=96.64  E-value=0.0016  Score=45.61  Aligned_cols=24  Identities=25%  Similarity=0.195  Sum_probs=20.3

Q ss_pred             eeeEEEEECCCCCCHHHHHHHHhc
Q psy15714         22 KALKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        22 ~~~ki~v~G~~~~GKstli~~~~~   45 (205)
                      +...|+++|.+|+||||+.+.+..
T Consensus        12 ~~~~i~l~G~~GsGKsT~~~~L~~   35 (186)
T 2yvu_A           12 KGIVVWLTGLPGSGKTTIATRLAD   35 (186)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHH
Confidence            446799999999999999987754

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=96.64  E-value=0.00082  Score=45.62  Aligned_cols=22  Identities=23%  Similarity=0.259  Sum_probs=19.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~   46 (205)
                      .++++|++|+|||||++.+.+.
T Consensus        38 ~~~l~G~~G~GKTtL~~~i~~~   59 (149)
T 2kjq_A           38 FIYVWGEEGAGKSHLLQAWVAQ   59 (149)
T ss_dssp             EEEEESSSTTTTCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6889999999999999887763

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=96.63  E-value=0.0011  Score=50.48  Aligned_cols=21  Identities=29%  Similarity=0.336  Sum_probs=19.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHh
Q psy15714         24 LKVTTVGDGMVGKTCLLITHT   44 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~   44 (205)
                      -.++++|++|+|||||+|.+.
T Consensus       166 ~i~~l~G~sG~GKSTLln~l~  186 (302)
T 2yv5_A          166 FICILAGPSGVGKSSILSRLT  186 (302)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            367999999999999999998

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=96.63  E-value=0.0015  Score=46.67  Aligned_cols=25  Identities=24%  Similarity=0.228  Sum_probs=21.4

Q ss_pred             eeeEEEEECCCCCCHHHHHHHHhcC
Q psy15714         22 KALKVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        22 ~~~ki~v~G~~~~GKstli~~~~~~   46 (205)
                      ....|+|+|++|+||||+.+.+...
T Consensus        20 ~~~~i~i~G~~GsGKSTl~~~L~~~   44 (207)
T 2qt1_A           20 KTFIIGISGVTNSGKTTLAKNLQKH   44 (207)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHh
Confidence            3467999999999999999888764

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=96.63  E-value=0.00092  Score=52.24  Aligned_cols=24  Identities=25%  Similarity=0.279  Sum_probs=21.3

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcC
Q psy15714         23 ALKVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        23 ~~ki~v~G~~~~GKstli~~~~~~   46 (205)
                      .-+++|+|++|+|||||++.+.+-
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl  193 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAV  193 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHH
Confidence            568999999999999999988764

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=96.62  E-value=0.0014  Score=48.19  Aligned_cols=26  Identities=15%  Similarity=0.192  Sum_probs=21.3

Q ss_pred             cceeeEEEEECCCCCCHHHHHHHHhc
Q psy15714         20 VHKALKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        20 ~~~~~ki~v~G~~~~GKstli~~~~~   45 (205)
                      ......|+|+|+.|+|||||++.+.+
T Consensus        22 i~~g~iigI~G~~GsGKSTl~k~L~~   47 (245)
T 2jeo_A           22 SMRPFLIGVSGGTASGKSTVCEKIME   47 (245)
T ss_dssp             -CCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            34456799999999999999987765

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=96.62  E-value=0.001  Score=46.11  Aligned_cols=21  Identities=19%  Similarity=0.170  Sum_probs=18.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q psy15714         25 KVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~   45 (205)
                      +|+++|++|+||||+.+.+..
T Consensus         6 ~i~i~G~~GsGKsTla~~La~   26 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAK   26 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            699999999999999987754

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=96.62  E-value=0.0011  Score=49.71  Aligned_cols=21  Identities=29%  Similarity=0.227  Sum_probs=19.2

Q ss_pred             EEEECCCCCCHHHHHHHHhcC
Q psy15714         26 VTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        26 i~v~G~~~~GKstli~~~~~~   46 (205)
                      ++++|++|+|||||++.+.+.
T Consensus        47 vlL~Gp~GtGKTtLakala~~   67 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVANE   67 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            999999999999999988763

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=96.60  E-value=0.0016  Score=49.92  Aligned_cols=25  Identities=16%  Similarity=0.089  Sum_probs=21.1

Q ss_pred             cceeeEEEEECCCCCCHHHHHHHHh
Q psy15714         20 VHKALKVTTVGDGMVGKTCLLITHT   44 (205)
Q Consensus        20 ~~~~~ki~v~G~~~~GKstli~~~~   44 (205)
                      ....+-|+|+|++|+|||||++.+.
T Consensus        89 ~~~p~iigI~GpsGSGKSTl~~~L~  113 (321)
T 3tqc_A           89 PKVPYIIGIAGSVAVGKSTTSRVLK  113 (321)
T ss_dssp             CCCCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHH
Confidence            3456789999999999999997765

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=96.59  E-value=0.0014  Score=46.77  Aligned_cols=24  Identities=21%  Similarity=0.040  Sum_probs=20.5

Q ss_pred             eeeEEEEECCCCCCHHHHHHHHhc
Q psy15714         22 KALKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        22 ~~~ki~v~G~~~~GKstli~~~~~   45 (205)
                      +...|++.|.+|+||||+.+.+..
T Consensus         9 ~~~~I~l~G~~GsGKST~~~~L~~   32 (212)
T 2wwf_A            9 KGKFIVFEGLDRSGKSTQSKLLVE   32 (212)
T ss_dssp             CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred             cCCEEEEEcCCCCCHHHHHHHHHH
Confidence            346799999999999999987764

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=96.59  E-value=0.0012  Score=49.99  Aligned_cols=22  Identities=27%  Similarity=0.344  Sum_probs=19.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~   46 (205)
                      .++++|+.|+|||||++.+.+-
T Consensus        66 ~~~i~G~NGsGKSTLlk~l~Gl   87 (290)
T 2bbs_A           66 LLAVAGSTGAGKTSLLMMIMGE   87 (290)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            5799999999999999988764

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=96.58  E-value=0.0013  Score=47.12  Aligned_cols=24  Identities=17%  Similarity=0.120  Sum_probs=20.7

Q ss_pred             eeeEEEEECCCCCCHHHHHHHHhc
Q psy15714         22 KALKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        22 ~~~ki~v~G~~~~GKstli~~~~~   45 (205)
                      +...|++.|.+||||||+.+.+..
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~L~~   31 (215)
T 1nn5_A            8 RGALIVLEGVDRAGKSTQSRKLVE   31 (215)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            346899999999999999988764

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=96.57  E-value=0.0012  Score=46.42  Aligned_cols=23  Identities=17%  Similarity=0.037  Sum_probs=19.9

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhc
Q psy15714         23 ALKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        23 ~~ki~v~G~~~~GKstli~~~~~   45 (205)
                      ...|+++|.+|+||||+.+.+..
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~La~   31 (196)
T 2c95_A            9 TNIIFVVGGPGSGKGTQCEKIVQ   31 (196)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999987764

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=96.56  E-value=0.0016  Score=47.41  Aligned_cols=26  Identities=23%  Similarity=0.198  Sum_probs=21.9

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcC
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~   46 (205)
                      ....-|+|.|+.|+||||+++.+.+.
T Consensus        18 ~~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           18 TQPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhc
Confidence            34467999999999999999887764

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=96.56  E-value=0.0013  Score=48.45  Aligned_cols=21  Identities=38%  Similarity=0.305  Sum_probs=19.2

Q ss_pred             EEEECCCCCCHHHHHHHHhcC
Q psy15714         26 VTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        26 i~v~G~~~~GKstli~~~~~~   46 (205)
                      ++++|++|+|||||++.+.+.
T Consensus        52 ~ll~G~~G~GKTtl~~~i~~~   72 (254)
T 1ixz_A           52 VLLVGPPGVGKTHLARAVAGE   72 (254)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            899999999999999988764

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=96.55  E-value=0.001  Score=48.05  Aligned_cols=22  Identities=27%  Similarity=0.158  Sum_probs=19.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHhc
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~   45 (205)
                      ..|+|+|++|+||||+.+.+..
T Consensus         6 ~~I~l~G~~GsGKsT~~~~La~   27 (222)
T 1zak_A            6 LKVMISGAPASGKGTQCELIKT   27 (222)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999987764

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=96.55  E-value=0.0015  Score=48.28  Aligned_cols=22  Identities=27%  Similarity=0.182  Sum_probs=19.9

Q ss_pred             eeEEEEECCCCCCHHHHHHHHh
Q psy15714         23 ALKVTTVGDGMVGKTCLLITHT   44 (205)
Q Consensus        23 ~~ki~v~G~~~~GKstli~~~~   44 (205)
                      ...|+|+|++|+||||+++.+.
T Consensus        27 g~~I~I~G~~GsGKSTl~k~La   48 (252)
T 4e22_A           27 APVITVDGPSGAGKGTLCKALA   48 (252)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            4589999999999999998887

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=96.54  E-value=0.0014  Score=51.14  Aligned_cols=23  Identities=17%  Similarity=0.157  Sum_probs=19.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENK   47 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~   47 (205)
                      .++++|++|+|||||++.+.+-.
T Consensus        56 i~~IiGpnGaGKSTLlr~i~GL~   78 (366)
T 3tui_C           56 IYGVIGASGAGKSTLIRCVNLLE   78 (366)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHhcCC
Confidence            47899999999999998887643

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.53  E-value=0.0015  Score=45.47  Aligned_cols=23  Identities=22%  Similarity=0.287  Sum_probs=19.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~   46 (205)
                      -.+++.|++|+|||+|++.+...
T Consensus        44 ~~~ll~G~~G~GKT~l~~~~~~~   66 (195)
T 1jbk_A           44 NNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999877653

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=96.53  E-value=0.0016  Score=45.76  Aligned_cols=21  Identities=24%  Similarity=0.045  Sum_probs=18.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q psy15714         25 KVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~   45 (205)
                      .|++.|.+||||||+.+.+..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~   22 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYE   22 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999988765

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=96.52  E-value=0.0012  Score=48.89  Aligned_cols=25  Identities=16%  Similarity=0.242  Sum_probs=21.2

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhc
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~   45 (205)
                      .....|+++|++|+||||+.+.+..
T Consensus        30 ~~~~~i~l~G~~GsGKSTla~~L~~   54 (253)
T 2p5t_B           30 KQPIAILLGGQSGAGKTTIHRIKQK   54 (253)
T ss_dssp             SSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3456899999999999999988764

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=96.52  E-value=0.0013  Score=51.23  Aligned_cols=23  Identities=26%  Similarity=0.235  Sum_probs=20.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENK   47 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~   47 (205)
                      .++++|++|+|||||++.+.+-.
T Consensus        32 ~~~llGpsGsGKSTLLr~iaGl~   54 (359)
T 3fvq_A           32 ILFIIGASGCGKTTLLRCLAGFE   54 (359)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCchHHHHHHHHhcCC
Confidence            57999999999999999887754

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=96.51  E-value=0.0017  Score=45.91  Aligned_cols=26  Identities=12%  Similarity=0.095  Sum_probs=22.2

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcC
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~   46 (205)
                      .+...|+|.|.+||||||+.+.+...
T Consensus         6 ~~~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            6 KHPIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHC
Confidence            34568999999999999999888764

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=96.50  E-value=0.0014  Score=51.05  Aligned_cols=21  Identities=24%  Similarity=0.219  Sum_probs=19.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q psy15714         25 KVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~   45 (205)
                      .++|+|+.|+|||||++.+.+
T Consensus       125 ~i~I~GptGSGKTTlL~~l~g  145 (356)
T 3jvv_A          125 LVLVTGPTGSGKSTTLAAMLD  145 (356)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            799999999999999988765

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=96.50  E-value=0.00096  Score=50.87  Aligned_cols=22  Identities=23%  Similarity=0.223  Sum_probs=19.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~   46 (205)
                      .++|+|+.|+|||||++.+.+-
T Consensus        82 ~vaivG~sGsGKSTLl~ll~gl  103 (306)
T 3nh6_A           82 TLALVGPSGAGKSTILRLLFRF  103 (306)
T ss_dssp             EEEEESSSCHHHHHHHHHHTTS
T ss_pred             EEEEECCCCchHHHHHHHHHcC
Confidence            6899999999999999877654

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=96.50  E-value=0.002  Score=48.71  Aligned_cols=24  Identities=21%  Similarity=0.056  Sum_probs=20.3

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHh
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHT   44 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~   44 (205)
                      .....|+|.|++|+|||||++.+.
T Consensus        29 ~~~~ii~I~G~sGsGKSTla~~L~   52 (290)
T 1odf_A           29 KCPLFIFFSGPQGSGKSFTSIQIY   52 (290)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHH
Confidence            456789999999999999986654

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=96.50  E-value=0.0015  Score=50.80  Aligned_cols=23  Identities=26%  Similarity=0.203  Sum_probs=20.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENK   47 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~   47 (205)
                      .++++|++|+|||||++.+.+-.
T Consensus        43 ~~~llGpnGsGKSTLLr~iaGl~   65 (355)
T 1z47_A           43 MVGLLGPSGSGKTTILRLIAGLE   65 (355)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            57899999999999999887654

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=96.49  E-value=0.0013  Score=46.52  Aligned_cols=23  Identities=17%  Similarity=0.068  Sum_probs=20.1

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhc
Q psy15714         23 ALKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        23 ~~ki~v~G~~~~GKstli~~~~~   45 (205)
                      ...|+++|.+|+||||+.+.+..
T Consensus        12 ~~~I~l~G~~GsGKsT~a~~L~~   34 (199)
T 2bwj_A           12 CKIIFIIGGPGSGKGTQCEKLVE   34 (199)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999987764

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=96.47  E-value=0.002  Score=47.86  Aligned_cols=22  Identities=18%  Similarity=0.181  Sum_probs=19.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHhc
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~   45 (205)
                      ..|+++|.+||||||+.+.+..
T Consensus         5 ~lIvl~G~pGSGKSTla~~La~   26 (260)
T 3a4m_A            5 MLIILTGLPGVGKSTFSKNLAK   26 (260)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHH
Confidence            4799999999999999988764

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=96.46  E-value=0.0022  Score=45.63  Aligned_cols=25  Identities=24%  Similarity=0.141  Sum_probs=20.8

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhc
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~   45 (205)
                      .....|+|+|++|+|||||++.+.+
T Consensus        20 ~~~~~i~i~G~~GsGKstl~~~l~~   44 (201)
T 1rz3_A           20 AGRLVLGIDGLSRSGKTTLANQLSQ   44 (201)
T ss_dssp             SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3446899999999999999987764

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=96.46  E-value=0.0016  Score=50.69  Aligned_cols=23  Identities=26%  Similarity=0.200  Sum_probs=20.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENK   47 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~   47 (205)
                      .++++|++|+|||||++.+.+-.
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (359)
T 2yyz_A           31 FVALLGPSGCGKTTTLLMLAGIY   53 (359)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHHCCC
Confidence            57899999999999999887643

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=96.45  E-value=0.0017  Score=50.66  Aligned_cols=23  Identities=26%  Similarity=0.212  Sum_probs=20.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENK   47 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~   47 (205)
                      .++++|++|+|||||++.+.+-.
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (362)
T 2it1_A           31 FMALLGPSGSGKSTLLYTIAGIY   53 (362)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCchHHHHHHHHhcCC
Confidence            57999999999999999887653

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=96.44  E-value=0.0018  Score=48.01  Aligned_cols=21  Identities=24%  Similarity=0.170  Sum_probs=18.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q psy15714         25 KVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~   45 (205)
                      -|+|+|++|+|||||.+++..
T Consensus         3 li~I~G~~GSGKSTla~~La~   23 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQ   23 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999988763

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=96.44  E-value=0.0017  Score=49.47  Aligned_cols=21  Identities=33%  Similarity=0.243  Sum_probs=18.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHh
Q psy15714         24 LKVTTVGDGMVGKTCLLITHT   44 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~   44 (205)
                      -.++++|++|+||||+++.+.
T Consensus       103 ~vi~lvG~nGsGKTTll~~La  123 (304)
T 1rj9_A          103 RVVLVVGVNGVGKTTTIAKLG  123 (304)
T ss_dssp             SEEEEECSTTSSHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHH
Confidence            478999999999999998776

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=96.44  E-value=0.00076  Score=46.92  Aligned_cols=22  Identities=27%  Similarity=0.298  Sum_probs=19.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~   46 (205)
                      .++|+|++|+|||||++.+.+-
T Consensus         4 ~v~IvG~SGsGKSTL~~~L~~~   25 (171)
T 2f1r_A            4 ILSIVGTSDSGKTTLITRMMPI   25 (171)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999877654

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=96.43  E-value=0.0018  Score=50.85  Aligned_cols=23  Identities=30%  Similarity=0.229  Sum_probs=20.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENK   47 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~   47 (205)
                      .++++|++|+|||||++.+.+-.
T Consensus        31 ~~~llGpsGsGKSTLLr~iaGl~   53 (381)
T 3rlf_A           31 FVVFVGPSGCGKSTLLRMIAGLE   53 (381)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHHcCC
Confidence            57999999999999999887654

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=96.43  E-value=0.0017  Score=49.37  Aligned_cols=24  Identities=29%  Similarity=0.163  Sum_probs=20.0

Q ss_pred             eeeEEEEECCCCCCHHHHHHHHhc
Q psy15714         22 KALKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        22 ~~~ki~v~G~~~~GKstli~~~~~   45 (205)
                      ..-.++++|++|+||||+++.+.+
T Consensus        99 ~g~vi~lvG~nGsGKTTll~~Lag  122 (302)
T 3b9q_A           99 KPAVIMIVGVNGGGKTTSLGKLAH  122 (302)
T ss_dssp             SCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHH
Confidence            345789999999999999977664

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=96.41  E-value=0.0021  Score=44.60  Aligned_cols=22  Identities=27%  Similarity=0.179  Sum_probs=19.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHhc
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~   45 (205)
                      ..+.++|.+|+|||||+.++..
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~   26 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVA   26 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999988775

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=96.41  E-value=0.0019  Score=50.61  Aligned_cols=23  Identities=22%  Similarity=0.134  Sum_probs=20.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENK   47 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~   47 (205)
                      .++++|++|+|||||++.+.+-.
T Consensus        39 ~~~llGpnGsGKSTLLr~iaGl~   61 (372)
T 1v43_A           39 FLVLLGPSGCGKTTTLRMIAGLE   61 (372)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            57899999999999999887643

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=96.41  E-value=0.0018  Score=50.69  Aligned_cols=23  Identities=22%  Similarity=0.122  Sum_probs=20.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENK   47 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~   47 (205)
                      .++++|++|+|||||++.+.+-.
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (372)
T 1g29_1           31 FMILLGPSGCGKTTTLRMIAGLE   53 (372)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCcHHHHHHHHHHcCC
Confidence            57999999999999999887654

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=96.39  E-value=0.0018  Score=49.89  Aligned_cols=22  Identities=27%  Similarity=0.235  Sum_probs=19.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~   46 (205)
                      .++++|++|+|||||++.+.+.
T Consensus        53 ~~ll~Gp~G~GKTTLa~~ia~~   74 (334)
T 1in4_A           53 HVLLAGPPGLGKTTLAHIIASE   74 (334)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            5899999999999999887753

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=96.38  E-value=0.002  Score=48.30  Aligned_cols=21  Identities=38%  Similarity=0.305  Sum_probs=19.2

Q ss_pred             EEEECCCCCCHHHHHHHHhcC
Q psy15714         26 VTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        26 i~v~G~~~~GKstli~~~~~~   46 (205)
                      ++++|++|+|||||++.+.+.
T Consensus        76 vll~Gp~GtGKTtl~~~i~~~   96 (278)
T 1iy2_A           76 VLLVGPPGVGKTHLARAVAGE   96 (278)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCcChHHHHHHHHHHH
Confidence            899999999999999988764

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=96.38  E-value=0.0023  Score=48.82  Aligned_cols=24  Identities=17%  Similarity=0.151  Sum_probs=20.6

Q ss_pred             eeeEEEEECCCCCCHHHHHHHHhc
Q psy15714         22 KALKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        22 ~~~ki~v~G~~~~GKstli~~~~~   45 (205)
                      ....|+|+|++|+|||||++.+.+
T Consensus        79 ~g~iigI~G~~GsGKSTl~~~L~~  102 (308)
T 1sq5_A           79 IPYIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            446799999999999999987765

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=96.38  E-value=0.0026  Score=45.76  Aligned_cols=23  Identities=17%  Similarity=0.148  Sum_probs=20.5

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhc
Q psy15714         23 ALKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        23 ~~ki~v~G~~~~GKstli~~~~~   45 (205)
                      .+.|+|.|.+||||||+.+.+..
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999988865

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=96.36  E-value=0.0028  Score=44.10  Aligned_cols=22  Identities=27%  Similarity=0.199  Sum_probs=19.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHhc
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~   45 (205)
                      ..|+++|.+|+||||+.+.+..
T Consensus         6 ~~i~l~G~~GsGKST~~~~L~~   27 (179)
T 2pez_A            6 CTVWLTGLSGAGKTTVSMALEE   27 (179)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5789999999999999987765

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=96.35  E-value=0.0022  Score=44.13  Aligned_cols=21  Identities=19%  Similarity=0.099  Sum_probs=18.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q psy15714         25 KVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~   45 (205)
                      .|++.|.+|+||||+.+.+..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~   24 (173)
T 1e6c_A            4 PIFMVGARGCGMTTVGRELAR   24 (173)
T ss_dssp             CEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999987764

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=96.34  E-value=0.0021  Score=44.79  Aligned_cols=21  Identities=19%  Similarity=-0.004  Sum_probs=18.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q psy15714         25 KVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~   45 (205)
                      -.+|+|+.|+|||||++++..
T Consensus        28 ~~~i~G~NGsGKStll~ai~~   48 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILF   48 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            468999999999999988764

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=96.33  E-value=0.0022  Score=46.31  Aligned_cols=21  Identities=19%  Similarity=0.259  Sum_probs=18.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q psy15714         25 KVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~   45 (205)
                      -++++|++|+|||||++.+..
T Consensus        25 ~~~i~G~~GsGKTtl~~~l~~   45 (235)
T 2w0m_A           25 FIALTGEPGTGKTIFSLHFIA   45 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            578999999999999988774

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=96.33  E-value=0.0019  Score=49.83  Aligned_cols=23  Identities=26%  Similarity=0.209  Sum_probs=20.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENK   47 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~   47 (205)
                      .++|+|+.|+|||||++.+.+-.
T Consensus       173 ~v~i~G~~GsGKTTll~~l~g~~  195 (330)
T 2pt7_A          173 NVIVCGGTGSGKTTYIKSIMEFI  195 (330)
T ss_dssp             CEEEEESTTSCHHHHHHHGGGGS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999888653

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=96.32  E-value=0.0023  Score=50.21  Aligned_cols=22  Identities=14%  Similarity=0.144  Sum_probs=19.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHhc
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~   45 (205)
                      -.++|+|++|+|||||++.+.+
T Consensus       137 ~~i~ivG~~GsGKTTll~~l~~  158 (372)
T 2ewv_A          137 GLILVTGPTGSGKSTTIASMID  158 (372)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            3689999999999999988775

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=96.31  E-value=0.0033  Score=45.83  Aligned_cols=25  Identities=20%  Similarity=0.103  Sum_probs=21.2

Q ss_pred             eeeEEEEECCCCCCHHHHHHHHhcC
Q psy15714         22 KALKVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        22 ~~~ki~v~G~~~~GKstli~~~~~~   46 (205)
                      +...|++.|++|+||||+++.+...
T Consensus        25 ~g~~i~i~G~~GsGKsT~~~~l~~~   49 (229)
T 4eaq_A           25 MSAFITFEGPEGSGKTTVINEVYHR   49 (229)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            5568999999999999999877653

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=96.29  E-value=0.0024  Score=44.54  Aligned_cols=21  Identities=24%  Similarity=0.135  Sum_probs=18.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q psy15714         25 KVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~   45 (205)
                      .|+++|.+|+||||+.+.+..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~   24 (184)
T 2iyv_A            4 KAVLVGLPGSGKSTIGRRLAK   24 (184)
T ss_dssp             SEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            599999999999999887764

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=96.29  E-value=0.002  Score=50.29  Aligned_cols=23  Identities=22%  Similarity=0.294  Sum_probs=20.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~   46 (205)
                      -.++|+|+.|+|||||++.+.+-
T Consensus       176 ~~i~ivG~sGsGKSTll~~l~~~  198 (361)
T 2gza_A          176 RVIVVAGETGSGKTTLMKALMQE  198 (361)
T ss_dssp             CCEEEEESSSSCHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHhc
Confidence            37899999999999999988864

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=96.29  E-value=0.0031  Score=48.55  Aligned_cols=25  Identities=24%  Similarity=0.216  Sum_probs=21.0

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhc
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~   45 (205)
                      .+.--++++|++|+||||+++.+.+
T Consensus       127 ~~g~vi~lvG~nGaGKTTll~~Lag  151 (328)
T 3e70_C          127 EKPYVIMFVGFNGSGKTTTIAKLAN  151 (328)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3456899999999999999987764

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=96.28  E-value=0.0022  Score=51.02  Aligned_cols=22  Identities=18%  Similarity=0.203  Sum_probs=19.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~   46 (205)
                      .++|+|+.|+|||||++.+.+.
T Consensus       169 ii~I~GpnGSGKTTlL~allg~  190 (418)
T 1p9r_A          169 IILVTGPTGSGKSTTLYAGLQE  190 (418)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHhh
Confidence            5899999999999999988764

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.28  E-value=0.00081  Score=48.13  Aligned_cols=21  Identities=19%  Similarity=0.170  Sum_probs=18.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q psy15714         25 KVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~   45 (205)
                      .|+|.|.+|+||||+++.+..
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~   22 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSG   22 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            589999999999999987764

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=96.28  E-value=0.0027  Score=46.40  Aligned_cols=25  Identities=20%  Similarity=0.173  Sum_probs=20.4

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhc
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~   45 (205)
                      .+.+.|++.|++|+||||+.+.+..
T Consensus         7 ~~~~~i~i~G~~GsGKsTla~~la~   31 (233)
T 3r20_A            7 SGSLVVAVDGPAGTGKSSVSRGLAR   31 (233)
T ss_dssp             --CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3457899999999999999987763

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=96.26  E-value=0.0025  Score=47.07  Aligned_cols=21  Identities=33%  Similarity=0.229  Sum_probs=19.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q psy15714         25 KVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~   45 (205)
                      .+++.|++|+|||+|++.+.+
T Consensus        47 ~vll~G~~GtGKT~la~~la~   67 (257)
T 1lv7_A           47 GVLMVGPPGTGKTLLAKAIAG   67 (257)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEECcCCCCHHHHHHHHHH
Confidence            599999999999999988865

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=96.25  E-value=0.0016  Score=50.62  Aligned_cols=23  Identities=22%  Similarity=0.125  Sum_probs=20.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENK   47 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~   47 (205)
                      .++++|++|+|||||++.+.+-.
T Consensus        28 ~~~llGpnGsGKSTLLr~iaGl~   50 (348)
T 3d31_A           28 YFVILGPTGAGKTLFLELIAGFH   50 (348)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCccHHHHHHHHHcCC
Confidence            57999999999999999887653

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=96.24  E-value=0.0021  Score=44.58  Aligned_cols=24  Identities=25%  Similarity=0.217  Sum_probs=19.8

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcC
Q psy15714         23 ALKVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        23 ~~ki~v~G~~~~GKstli~~~~~~   46 (205)
                      .-.+++.|++|+|||+|++.+...
T Consensus        43 ~~~vll~G~~G~GKT~la~~~~~~   66 (187)
T 2p65_A           43 KNNPILLGDPGVGKTAIVEGLAIK   66 (187)
T ss_dssp             SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHH
Confidence            346899999999999999777653

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=96.21  E-value=0.003  Score=45.71  Aligned_cols=23  Identities=17%  Similarity=0.147  Sum_probs=20.0

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhc
Q psy15714         23 ALKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        23 ~~ki~v~G~~~~GKstli~~~~~   45 (205)
                      .-.+++.|++|+|||+|++.+..
T Consensus        52 ~~~~ll~G~~G~GKT~la~~l~~   74 (242)
T 3bos_A           52 VQAIYLWGPVKSGRTHLIHAACA   74 (242)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999987764

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=96.19  E-value=0.0033  Score=42.55  Aligned_cols=20  Identities=25%  Similarity=0.218  Sum_probs=17.3

Q ss_pred             EEEEECCCCCCHHHHHHHHh
Q psy15714         25 KVTTVGDGMVGKTCLLITHT   44 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~   44 (205)
                      -.+|+|+.|+|||||+.++.
T Consensus        25 ~~~I~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           25 INLIIGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHH
Confidence            35899999999999998765

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=96.19  E-value=0.0029  Score=44.81  Aligned_cols=23  Identities=30%  Similarity=0.219  Sum_probs=19.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~   46 (205)
                      -.+++.|++|+|||+|++.+...
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~   77 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANE   77 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            57899999999999999877653

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=96.19  E-value=0.0028  Score=49.40  Aligned_cols=24  Identities=29%  Similarity=0.163  Sum_probs=20.1

Q ss_pred             eeeEEEEECCCCCCHHHHHHHHhc
Q psy15714         22 KALKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        22 ~~~ki~v~G~~~~GKstli~~~~~   45 (205)
                      ..-.++++|++|+||||+++.+.+
T Consensus       156 ~g~vi~lvG~nGsGKTTll~~Lag  179 (359)
T 2og2_A          156 KPAVIMIVGVNGGGKTTSLGKLAH  179 (359)
T ss_dssp             SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCChHHHHHHHHHh
Confidence            445789999999999999977664

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.18  E-value=0.0033  Score=47.30  Aligned_cols=26  Identities=12%  Similarity=0.017  Sum_probs=21.9

Q ss_pred             cceeeEEEEECCCCCCHHHHHHHHhc
Q psy15714         20 VHKALKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        20 ~~~~~ki~v~G~~~~GKstli~~~~~   45 (205)
                      ....+.|+|.|.+||||||+.+.+..
T Consensus        72 ~~~~~iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           72 PSGLYVLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             CTTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            34567899999999999999988763

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=96.18  E-value=0.0036  Score=43.00  Aligned_cols=22  Identities=18%  Similarity=0.049  Sum_probs=19.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHhc
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~   45 (205)
                      -.|++.|.+||||||+.+.+..
T Consensus         8 ~~i~l~G~~GsGKSTva~~La~   29 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELGL   29 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            3789999999999999987754

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=96.16  E-value=0.003  Score=49.82  Aligned_cols=22  Identities=27%  Similarity=0.302  Sum_probs=19.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~   46 (205)
                      .++++|++|+|||||++.+.+-
T Consensus        49 ~~~llGpsGsGKSTLLr~iaGl   70 (390)
T 3gd7_A           49 RVGLLGRTGSGKSTLLSAFLRL   70 (390)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCChHHHHHHHHhCC
Confidence            5799999999999999988763

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=96.14  E-value=0.0027  Score=51.84  Aligned_cols=23  Identities=26%  Similarity=0.173  Sum_probs=20.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENK   47 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~   47 (205)
                      .++|+|++|||||||++.+.+--
T Consensus       262 ~i~I~GptGSGKTTlL~aL~~~i  284 (511)
T 2oap_1          262 SAIVVGETASGKTTTLNAIMMFI  284 (511)
T ss_dssp             CEEEEESTTSSHHHHHHHHGGGS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            49999999999999999988644

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=96.12  E-value=0.0022  Score=49.14  Aligned_cols=23  Identities=26%  Similarity=0.102  Sum_probs=20.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENK   47 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~   47 (205)
                      -++|+|+.|+|||||++.+.+..
T Consensus         6 v~~i~G~~GaGKTTll~~l~~~~   28 (318)
T 1nij_A            6 VTLLTGFLGAGKTTLLRHILNEQ   28 (318)
T ss_dssp             EEEEEESSSSSCHHHHHHHHHSC
T ss_pred             EEEEEecCCCCHHHHHHHHHhhc
Confidence            56899999999999999998653

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=96.12  E-value=0.0042  Score=44.45  Aligned_cols=26  Identities=19%  Similarity=0.270  Sum_probs=20.9

Q ss_pred             cceeeEEEEECCCCCCHHHHHHHHhc
Q psy15714         20 VHKALKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        20 ~~~~~ki~v~G~~~~GKstli~~~~~   45 (205)
                      ......|+++|.+|+||||+.+.+..
T Consensus        22 ~~~~~~i~~~G~~GsGKsT~~~~l~~   47 (211)
T 1m7g_A           22 NQRGLTIWLTGLSASGKSTLAVELEH   47 (211)
T ss_dssp             TSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHH
Confidence            34456789999999999999977654

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=96.12  E-value=0.004  Score=47.08  Aligned_cols=22  Identities=18%  Similarity=0.096  Sum_probs=19.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHhc
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~   45 (205)
                      ..|+++|.+|+||||+.+++..
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999988875

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=96.11  E-value=0.0032  Score=51.05  Aligned_cols=25  Identities=24%  Similarity=0.234  Sum_probs=20.5

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhc
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~   45 (205)
                      ...-.++|+|++|+|||||++.+.+
T Consensus       291 ~~GeVI~LVGpNGSGKTTLl~~LAg  315 (503)
T 2yhs_A          291 KAPFVILMVGVNGVGKTTTIGKLAR  315 (503)
T ss_dssp             CTTEEEEEECCTTSSHHHHHHHHHH
T ss_pred             cCCeEEEEECCCcccHHHHHHHHHH
Confidence            3445789999999999999977663

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=96.10  E-value=0.0024  Score=51.47  Aligned_cols=23  Identities=35%  Similarity=0.342  Sum_probs=20.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~   46 (205)
                      -+++|+|+.|+|||||++.+.+-
T Consensus       139 e~v~IvGpnGsGKSTLlr~L~Gl  161 (460)
T 2npi_A          139 PRVVIVGGSQTGKTSLSRTLCSY  161 (460)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCc
Confidence            37899999999999999887753

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=96.09  E-value=0.0015  Score=50.76  Aligned_cols=23  Identities=17%  Similarity=0.212  Sum_probs=20.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENK   47 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~   47 (205)
                      .++++|++|+|||||++.+.+-.
T Consensus        33 ~~~llGpnGsGKSTLLr~iaGl~   55 (353)
T 1oxx_K           33 RFGILGPSGAGKTTFMRIIAGLD   55 (353)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            57899999999999999887654

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=96.08  E-value=0.0036  Score=45.58  Aligned_cols=22  Identities=23%  Similarity=0.131  Sum_probs=19.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~   46 (205)
                      -++++|++|+|||||+..+...
T Consensus        26 ~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           26 ITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHH
Confidence            5799999999999999988874

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=96.08  E-value=0.003  Score=47.71  Aligned_cols=21  Identities=10%  Similarity=0.177  Sum_probs=18.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q psy15714         25 KVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~   45 (205)
                      -++|+|++|+|||||++.+..
T Consensus        37 ~~~i~G~~G~GKTTl~~~ia~   57 (296)
T 1cr0_A           37 VIMVTSGSGMGKSTFVRQQAL   57 (296)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHH
Confidence            579999999999999977664

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=96.08  E-value=0.0034  Score=48.74  Aligned_cols=24  Identities=21%  Similarity=0.216  Sum_probs=21.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCC
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTENK   47 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~~   47 (205)
                      =+++++|++|+|||||++.+.+..
T Consensus        72 q~~gIiG~nGaGKTTLl~~I~g~~   95 (347)
T 2obl_A           72 QRIGIFAGSGVGKSTLLGMICNGA   95 (347)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            378999999999999999888764

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=96.06  E-value=0.0037  Score=44.78  Aligned_cols=21  Identities=24%  Similarity=0.164  Sum_probs=19.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q psy15714         25 KVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~   45 (205)
                      -++++|++|+|||||+..+..
T Consensus        22 ~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           22 LTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            579999999999999988876

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=96.05  E-value=0.0041  Score=41.77  Aligned_cols=25  Identities=12%  Similarity=-0.072  Sum_probs=20.9

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCC
Q psy15714         23 ALKVTTVGDGMVGKTCLLITHTENK   47 (205)
Q Consensus        23 ~~ki~v~G~~~~GKstli~~~~~~~   47 (205)
                      ...|++.|++|+|||++.+.+....
T Consensus        24 ~~~vll~G~~GtGKt~lA~~i~~~~   48 (145)
T 3n70_A           24 DIAVWLYGAPGTGRMTGARYLHQFG   48 (145)
T ss_dssp             CSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHhC
Confidence            3468999999999999998876543

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=96.04  E-value=0.0032  Score=46.52  Aligned_cols=23  Identities=22%  Similarity=0.031  Sum_probs=19.7

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhc
Q psy15714         23 ALKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        23 ~~ki~v~G~~~~GKstli~~~~~   45 (205)
                      .-.|+++|++|+||||+.+.+..
T Consensus        48 g~~i~l~G~~GsGKSTl~~~La~   70 (250)
T 3nwj_A           48 GRSMYLVGMMGSGKTTVGKIMAR   70 (250)
T ss_dssp             TCCEEEECSTTSCHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            34799999999999999987754

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=96.00  E-value=0.004  Score=44.91  Aligned_cols=21  Identities=24%  Similarity=0.156  Sum_probs=18.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q psy15714         25 KVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~   45 (205)
                      -++|.|++|+|||+|++.+..
T Consensus        47 ~~ll~G~~G~GKT~l~~~~~~   67 (250)
T 1njg_A           47 AYLFSGTRGVGKTSIARLLAK   67 (250)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999987764

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=95.98  E-value=0.0044  Score=51.01  Aligned_cols=23  Identities=22%  Similarity=0.167  Sum_probs=20.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENK   47 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~   47 (205)
                      .++++|+.|+|||||++.+.+-.
T Consensus        49 ~~~LvG~NGaGKSTLlk~l~Gl~   71 (538)
T 1yqt_A           49 VVGIVGPNGTGKSTAVKILAGQL   71 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999888743

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=95.97  E-value=0.0034  Score=44.85  Aligned_cols=21  Identities=14%  Similarity=0.210  Sum_probs=18.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q psy15714         25 KVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~   45 (205)
                      .+++.|+||+|||+++.++..
T Consensus        60 ~ili~GPPGtGKTt~a~ala~   80 (212)
T 1tue_A           60 CLVFCGPANTGKSYFGMSFIH   80 (212)
T ss_dssp             EEEEESCGGGCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999877654

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=95.95  E-value=0.0044  Score=44.07  Aligned_cols=21  Identities=24%  Similarity=0.203  Sum_probs=18.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q psy15714         25 KVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~   45 (205)
                      .+++.|++|+|||++++.+..
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~~   60 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALAR   60 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            399999999999999987765

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=95.94  E-value=0.0042  Score=46.47  Aligned_cols=24  Identities=21%  Similarity=0.124  Sum_probs=20.5

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcC
Q psy15714         23 ALKVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        23 ~~ki~v~G~~~~GKstli~~~~~~   46 (205)
                      .-.+++.|++|+|||+|++++...
T Consensus        51 ~~~~ll~G~~GtGKT~la~~la~~   74 (285)
T 3h4m_A           51 PKGILLYGPPGTGKTLLAKAVATE   74 (285)
T ss_dssp             CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHH
Confidence            346999999999999999988654

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=95.94  E-value=0.0045  Score=45.61  Aligned_cols=22  Identities=23%  Similarity=0.116  Sum_probs=19.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHhc
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~   45 (205)
                      -.+++.|++|+|||++++.+..
T Consensus        40 ~~vll~G~~GtGKT~la~~la~   61 (262)
T 2qz4_A           40 KGALLLGPPGCGKTLLAKAVAT   61 (262)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            4589999999999999988765

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=95.93  E-value=0.0042  Score=46.81  Aligned_cols=24  Identities=25%  Similarity=0.117  Sum_probs=20.7

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcC
Q psy15714         23 ALKVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        23 ~~ki~v~G~~~~GKstli~~~~~~   46 (205)
                      .-.+++.|++|+|||+|++++...
T Consensus        54 ~~~vll~Gp~GtGKT~la~~la~~   77 (297)
T 3b9p_A           54 AKGLLLFGPPGNGKTLLARAVATE   77 (297)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHH
Confidence            357899999999999999988763

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=95.92  E-value=0.0044  Score=48.64  Aligned_cols=23  Identities=26%  Similarity=-0.002  Sum_probs=19.9

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhc
Q psy15714         23 ALKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        23 ~~ki~v~G~~~~GKstli~~~~~   45 (205)
                      .-.++++|++|+|||||++.+.+
T Consensus       169 ~~~i~l~G~~GsGKSTl~~~l~~  191 (377)
T 1svm_A          169 KRYWLFKGPIDSGKTTLAAALLE  191 (377)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHh
Confidence            34789999999999999988775

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=95.89  E-value=0.0036  Score=46.48  Aligned_cols=26  Identities=15%  Similarity=0.215  Sum_probs=21.2

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcC
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~   46 (205)
                      .+...|+|.|..|+||||+++.+...
T Consensus        22 ~~~~~I~ieG~~GsGKST~~~~L~~~   47 (263)
T 1p5z_B           22 TRIKKISIEGNIAAGKSTFVNILKQL   47 (263)
T ss_dssp             -CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHh
Confidence            45578999999999999999776653

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=95.86  E-value=0.0057  Score=44.60  Aligned_cols=26  Identities=15%  Similarity=0.227  Sum_probs=21.2

Q ss_pred             cceeeEEEEECCCCCCHHHHHHHHhc
Q psy15714         20 VHKALKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        20 ~~~~~ki~v~G~~~~GKstli~~~~~   45 (205)
                      ......|+++|.+|+||||+.+.+..
T Consensus        13 ~~~~~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           13 KMKTIQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             -CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence            34456899999999999999987764

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=95.84  E-value=0.0065  Score=42.98  Aligned_cols=28  Identities=14%  Similarity=0.163  Sum_probs=22.2

Q ss_pred             ccceeeEEEEECCCCCCHHHHHHHHhcC
Q psy15714         19 SVHKALKVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        19 ~~~~~~ki~v~G~~~~GKstli~~~~~~   46 (205)
                      .....+.|.++|.+||||||+.+.|...
T Consensus         8 ~~~~~~iIgltG~~GSGKSTva~~L~~~   35 (192)
T 2grj_A            8 HHHHHMVIGVTGKIGTGKSTVCEILKNK   35 (192)
T ss_dssp             --CCEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ccccceEEEEECCCCCCHHHHHHHHHHh
Confidence            3455688999999999999999877653

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=95.84  E-value=0.0048  Score=50.78  Aligned_cols=23  Identities=26%  Similarity=0.283  Sum_probs=20.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENK   47 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~   47 (205)
                      -++++|+.|+|||||++.+.+-.
T Consensus        27 i~gLiGpNGaGKSTLlkiL~Gl~   49 (538)
T 3ozx_A           27 ILGVLGKNGVGKTTVLKILAGEI   49 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            57999999999999999888743

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=95.82  E-value=0.0053  Score=47.99  Aligned_cols=19  Identities=21%  Similarity=0.275  Sum_probs=17.1

Q ss_pred             EEEECCCCCCHHHHHHHHh
Q psy15714         26 VTTVGDGMVGKTCLLITHT   44 (205)
Q Consensus        26 i~v~G~~~~GKstli~~~~   44 (205)
                      ++|+|+.|+|||||++++.
T Consensus        26 ~~i~G~NGaGKTTll~ai~   44 (365)
T 3qf7_A           26 TVVEGPNGAGKSSLFEAIS   44 (365)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            5699999999999998866

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=95.82  E-value=0.005  Score=46.69  Aligned_cols=23  Identities=26%  Similarity=0.128  Sum_probs=20.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~   46 (205)
                      -.+++.|++|+|||+|++++...
T Consensus        50 ~~vLL~Gp~GtGKT~la~ala~~   72 (301)
T 3cf0_A           50 KGVLFYGPPGCGKTLLAKAIANE   72 (301)
T ss_dssp             SEEEEECSSSSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCcCHHHHHHHHHHH
Confidence            36899999999999999888764

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=95.80  E-value=0.0062  Score=44.35  Aligned_cols=26  Identities=19%  Similarity=0.184  Sum_probs=19.8

Q ss_pred             cceeeEEEEECCCCCCHHHHHHHHhc
Q psy15714         20 VHKALKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        20 ~~~~~ki~v~G~~~~GKstli~~~~~   45 (205)
                      ....+++.++|+|||||||+..++..
T Consensus         5 ~~~~~~~~~~G~pGsGKsT~a~~L~~   30 (230)
T 3gmt_A            5 HHHHMRLILLGAPGAGKGTQANFIKE   30 (230)
T ss_dssp             ----CEEEEECCTTSCHHHHHHHHHH
T ss_pred             cccccceeeECCCCCCHHHHHHHHHH
Confidence            34567999999999999999987754

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=95.80  E-value=0.0052  Score=49.73  Aligned_cols=22  Identities=23%  Similarity=0.250  Sum_probs=19.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHhc
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~   45 (205)
                      =.++|+|+.|+|||||++.+.+
T Consensus        30 e~~~liG~nGsGKSTLl~~l~G   51 (483)
T 3euj_A           30 LVTTLSGGNGAGKSTTMAGFVT   51 (483)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCcHHHHHHHHhc
Confidence            3679999999999999988774

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=95.78  E-value=0.0078  Score=47.88  Aligned_cols=26  Identities=23%  Similarity=0.224  Sum_probs=21.6

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcC
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~   46 (205)
                      ....-|+++|++|+||||+.+++...
T Consensus       256 ~~~~lIil~G~pGSGKSTla~~L~~~  281 (416)
T 3zvl_A          256 PNPEVVVAVGFPGAGKSTFIQEHLVS  281 (416)
T ss_dssp             SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence            34457899999999999999998753

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=95.78  E-value=0.005  Score=46.57  Aligned_cols=24  Identities=17%  Similarity=0.012  Sum_probs=19.5

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcC
Q psy15714         23 ALKVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        23 ~~ki~v~G~~~~GKstli~~~~~~   46 (205)
                      ..-+++.|+||+|||+|++++...
T Consensus        36 p~~lLl~GppGtGKT~la~aiA~~   59 (293)
T 3t15_A           36 PLILGIWGGKGQGKSFQCELVFRK   59 (293)
T ss_dssp             CSEEEEEECTTSCHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            346778899999999999877653

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=95.77  E-value=0.0054  Score=46.91  Aligned_cols=22  Identities=27%  Similarity=0.193  Sum_probs=19.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHhc
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~   45 (205)
                      -.+++.|++|+|||+|++.+.+
T Consensus        38 ~~lll~G~~GtGKT~la~~i~~   59 (324)
T 1l8q_A           38 NPIFIYGSVGTGKTHLLQAAGN   59 (324)
T ss_dssp             SSEEEECSSSSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHH
Confidence            3589999999999999987765

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=95.72  E-value=0.0059  Score=50.97  Aligned_cols=23  Identities=22%  Similarity=0.274  Sum_probs=20.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENK   47 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~   47 (205)
                      .++++|+.|+|||||++.+.+-.
T Consensus       105 i~~LvGpNGaGKSTLLkiL~Gll  127 (608)
T 3j16_B          105 VLGLVGTNGIGKSTALKILAGKQ  127 (608)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            68999999999999999888643

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=95.70  E-value=0.007  Score=45.79  Aligned_cols=24  Identities=21%  Similarity=0.321  Sum_probs=19.6

Q ss_pred             eeeEEEEECCCCCCHHHHHHHHhc
Q psy15714         22 KALKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        22 ~~~ki~v~G~~~~GKstli~~~~~   45 (205)
                      ....+++.|++|+|||++++.+..
T Consensus        66 ~~~~vll~G~~GtGKT~la~~la~   89 (309)
T 3syl_A           66 PTLHMSFTGNPGTGKTTVALKMAG   89 (309)
T ss_dssp             CCCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            345799999999999999975543

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=95.69  E-value=0.006  Score=48.86  Aligned_cols=23  Identities=22%  Similarity=0.226  Sum_probs=20.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENK   47 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~   47 (205)
                      +++++|++|+|||||++.+.+..
T Consensus       159 ~~~IvG~sGsGKSTLl~~Iag~~  181 (438)
T 2dpy_A          159 RMGLFAGSGVGKSVLLGMMARYT  181 (438)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhccc
Confidence            78999999999999998888764

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=95.67  E-value=0.0067  Score=50.65  Aligned_cols=23  Identities=26%  Similarity=0.182  Sum_probs=20.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENK   47 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~   47 (205)
                      .++++|+.|+|||||++.+.+-.
T Consensus       119 ~~~LiG~NGsGKSTLlkiL~Gll  141 (607)
T 3bk7_A          119 VVGIVGPNGTGKTTAVKILAGQL  141 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCChHHHHHHHHhCCC
Confidence            68999999999999999887643

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=95.66  E-value=0.007  Score=49.79  Aligned_cols=23  Identities=22%  Similarity=0.274  Sum_probs=20.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENK   47 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~   47 (205)
                      .++|+|+.|+|||||++.+.+-.
T Consensus       314 ~~~i~G~NGsGKSTLlk~l~Gl~  336 (538)
T 1yqt_A          314 VIGIVGPNGIGKTTFVKMLAGVE  336 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999988743

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=95.65  E-value=0.0059  Score=45.69  Aligned_cols=21  Identities=24%  Similarity=0.245  Sum_probs=18.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q psy15714         25 KVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~   45 (205)
                      -++|+|++|+|||||+..+..
T Consensus        32 i~~i~G~~GsGKTtl~~~l~~   52 (279)
T 1nlf_A           32 VGALVSPGGAGKSMLALQLAA   52 (279)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            579999999999999977664

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=95.64  E-value=0.0061  Score=50.64  Aligned_cols=22  Identities=27%  Similarity=0.234  Sum_probs=19.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~   46 (205)
                      +++++|+.|+|||||++.+.+-
T Consensus       371 ~~~ivG~sGsGKSTLl~~l~g~  392 (582)
T 3b60_A          371 TVALVGRSGSGKSTIASLITRF  392 (582)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTT
T ss_pred             EEEEECCCCCCHHHHHHHHhhc
Confidence            6899999999999999987764

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=95.62  E-value=0.0074  Score=50.38  Aligned_cols=23  Identities=22%  Similarity=0.274  Sum_probs=20.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENK   47 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~   47 (205)
                      .++++|+.|+|||||++.+.+-.
T Consensus       384 i~~i~G~NGsGKSTLlk~l~Gl~  406 (607)
T 3bk7_A          384 VIGIVGPNGIGKTTFVKMLAGVE  406 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999888743

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=95.61  E-value=0.01  Score=44.16  Aligned_cols=26  Identities=27%  Similarity=0.239  Sum_probs=21.8

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcC
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~   46 (205)
                      .....+++.|++|+|||+|++++...
T Consensus        62 ~~~~~vLl~G~~GtGKT~la~~ia~~   87 (272)
T 1d2n_A           62 TPLVSVLLEGPPHSGKTALAAKIAEE   87 (272)
T ss_dssp             CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence            34568999999999999999887764

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=95.60  E-value=0.0071  Score=45.63  Aligned_cols=23  Identities=22%  Similarity=0.237  Sum_probs=19.8

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhc
Q psy15714         23 ALKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        23 ~~ki~v~G~~~~GKstli~~~~~   45 (205)
                      ...+++.|++|+|||++++.+..
T Consensus        50 ~~~vll~G~~GtGKT~la~~la~   72 (310)
T 1ofh_A           50 PKNILMIGPTGVGKTEIARRLAK   72 (310)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            34689999999999999987765

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=95.60  E-value=0.0071  Score=50.26  Aligned_cols=22  Identities=27%  Similarity=0.250  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~   46 (205)
                      .++++|+.|+|||||++.+.+-
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g~  392 (582)
T 3b5x_A          371 TVALVGRSGSGKSTIANLFTRF  392 (582)
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6899999999999999987764

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=95.59  E-value=0.0063  Score=47.28  Aligned_cols=23  Identities=17%  Similarity=0.065  Sum_probs=19.9

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhc
Q psy15714         23 ALKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        23 ~~ki~v~G~~~~GKstli~~~~~   45 (205)
                      .-.++|.|++|+|||||++.+..
T Consensus        45 ~~~vli~G~~G~GKTtl~~~l~~   67 (386)
T 2qby_A           45 PNNIFIYGLTGTGKTAVVKFVLS   67 (386)
T ss_dssp             CCCEEEEECTTSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH
Confidence            34689999999999999988775

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=95.56  E-value=0.0078  Score=49.51  Aligned_cols=23  Identities=17%  Similarity=0.186  Sum_probs=20.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENK   47 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~   47 (205)
                      .++++|+.|+|||||++.+.+-.
T Consensus       296 i~~i~G~nGsGKSTLl~~l~Gl~  318 (538)
T 3ozx_A          296 IIGILGPNGIGKTTFARILVGEI  318 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999888643

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.56  E-value=0.0072  Score=46.58  Aligned_cols=22  Identities=18%  Similarity=0.247  Sum_probs=19.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~   46 (205)
                      .+++.|++|+||||+++.+.+.
T Consensus        48 ~~ll~Gp~G~GKTtla~~la~~   69 (340)
T 1sxj_C           48 HLLFYGPPGTGKTSTIVALARE   69 (340)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            3899999999999999887764

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=95.54  E-value=0.004  Score=41.73  Aligned_cols=23  Identities=13%  Similarity=-0.028  Sum_probs=19.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~   46 (205)
                      ..|++.|++|+|||++.+.+...
T Consensus        28 ~~vll~G~~GtGKt~lA~~i~~~   50 (143)
T 3co5_A           28 SPVFLTGEAGSPFETVARYFHKN   50 (143)
T ss_dssp             SCEEEEEETTCCHHHHHGGGCCT
T ss_pred             CcEEEECCCCccHHHHHHHHHHh
Confidence            46999999999999999766543

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=95.53  E-value=0.0088  Score=42.65  Aligned_cols=20  Identities=25%  Similarity=0.218  Sum_probs=17.0

Q ss_pred             EEEEECCCCCCHHHHHHHHh
Q psy15714         25 KVTTVGDGMVGKTCLLITHT   44 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~   44 (205)
                      -.+|+|+.|+|||||+.++.
T Consensus        25 ~~~I~G~NgsGKStil~ai~   44 (203)
T 3qks_A           25 INLIIGQNGSGKSSLLDAIL   44 (203)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEEcCCCCCHHHHHHHHH
Confidence            45889999999999997754

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=95.53  E-value=0.0076  Score=46.99  Aligned_cols=22  Identities=32%  Similarity=0.228  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~   46 (205)
                      .++|.|++|+|||||++.+...
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~   67 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWEL   67 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999887754

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=95.53  E-value=0.0075  Score=43.91  Aligned_cols=20  Identities=25%  Similarity=0.127  Sum_probs=17.2

Q ss_pred             EEEEECCCCCCHHHHHHHHh
Q psy15714         25 KVTTVGDGMVGKTCLLITHT   44 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~   44 (205)
                      -++++|++|+|||||+..+.
T Consensus        25 ~~~i~G~~GsGKTtl~~~~~   44 (247)
T 2dr3_A           25 VVLLSGGPGTGKTIFSQQFL   44 (247)
T ss_dssp             EEEEEECTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            57999999999999976654

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=95.52  E-value=0.038  Score=44.28  Aligned_cols=24  Identities=21%  Similarity=0.206  Sum_probs=19.3

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHh
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHT   44 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~   44 (205)
                      ....=|.|+|+.++|||+|+|.++
T Consensus        65 ~~v~vvsv~G~~~~gks~l~N~ll   88 (457)
T 4ido_A           65 KEVVAVSVAGAFRKGKSFLMDFML   88 (457)
T ss_dssp             SBEEEEEEEEBTTSSHHHHHHHHH
T ss_pred             CceEEEEEECCCCCchhHHHHHHH
Confidence            345566799999999999999554

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=95.51  E-value=0.0071  Score=45.83  Aligned_cols=22  Identities=23%  Similarity=0.212  Sum_probs=18.4

Q ss_pred             eeEEEEECCCCCCHHHHHHHHh
Q psy15714         23 ALKVTTVGDGMVGKTCLLITHT   44 (205)
Q Consensus        23 ~~ki~v~G~~~~GKstli~~~~   44 (205)
                      .-.++++|++|+||||++..+.
T Consensus       105 g~vi~lvG~~GsGKTTl~~~LA  126 (296)
T 2px0_A          105 SKYIVLFGSTGAGKTTTLAKLA  126 (296)
T ss_dssp             SSEEEEEESTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            3478999999999999986654

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=95.49  E-value=0.0096  Score=42.17  Aligned_cols=21  Identities=24%  Similarity=0.207  Sum_probs=18.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q psy15714         25 KVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~   45 (205)
                      .|.|.|.+|+||||+.+.+..
T Consensus         4 ~i~i~G~~GsGKst~~~~la~   24 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAA   24 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999987764

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=95.47  E-value=0.0093  Score=42.39  Aligned_cols=25  Identities=28%  Similarity=0.322  Sum_probs=21.0

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCC
Q psy15714         23 ALKVTTVGDGMVGKTCLLITHTENK   47 (205)
Q Consensus        23 ~~ki~v~G~~~~GKstli~~~~~~~   47 (205)
                      ...|+|+|++|+|||+|...+...-
T Consensus        34 g~~ilI~GpsGsGKStLA~~La~~g   58 (205)
T 2qmh_A           34 GLGVLITGDSGVGKSETALELVQRG   58 (205)
T ss_dssp             TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhC
Confidence            3468999999999999998887643

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=95.46  E-value=0.0082  Score=46.01  Aligned_cols=23  Identities=17%  Similarity=0.141  Sum_probs=20.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~   46 (205)
                      --|++.|++|+|||+|++++...
T Consensus        46 ~~iLL~GppGtGKT~la~ala~~   68 (322)
T 1xwi_A           46 RGILLFGPPGTGKSYLAKAVATE   68 (322)
T ss_dssp             SEEEEESSSSSCHHHHHHHHHHH
T ss_pred             ceEEEECCCCccHHHHHHHHHHH
Confidence            46899999999999999888764

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=95.45  E-value=0.0096  Score=52.20  Aligned_cols=24  Identities=17%  Similarity=0.277  Sum_probs=21.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENKF   48 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~~   48 (205)
                      .++++|+.|+|||||++.+.++.+
T Consensus       463 ~v~LiGpNGsGKSTLLk~LagG~i  486 (986)
T 2iw3_A          463 RYGICGPNGCGKSTLMRAIANGQV  486 (986)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHTCS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCc
Confidence            579999999999999999987654

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=95.44  E-value=0.009  Score=45.51  Aligned_cols=22  Identities=23%  Similarity=0.147  Sum_probs=18.6

Q ss_pred             eeEEEEECCCCCCHHHHHHHHh
Q psy15714         23 ALKVTTVGDGMVGKTCLLITHT   44 (205)
Q Consensus        23 ~~ki~v~G~~~~GKstli~~~~   44 (205)
                      .--|+++|++|+||||++..+.
T Consensus       104 ~~vi~ivG~~GsGKTTl~~~LA  125 (306)
T 1vma_A          104 PFVIMVVGVNGTGKTTSCGKLA  125 (306)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHH
T ss_pred             CeEEEEEcCCCChHHHHHHHHH
Confidence            3468999999999999987665

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=95.42  E-value=0.013  Score=44.35  Aligned_cols=23  Identities=30%  Similarity=0.154  Sum_probs=19.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~   46 (205)
                      -.+++.|++|+|||++++.+...
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~~   70 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAAT   70 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHHH
Confidence            47999999999999999877653

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=95.40  E-value=0.0073  Score=50.35  Aligned_cols=22  Identities=32%  Similarity=0.255  Sum_probs=19.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~   46 (205)
                      .++++|+.|+|||||++.+.+-
T Consensus       383 ~~~ivG~sGsGKSTll~~l~g~  404 (598)
T 3qf4_B          383 KVALVGPTGSGKTTIVNLLMRF  404 (598)
T ss_dssp             EEEEECCTTSSTTHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            7899999999999999877654

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.38  E-value=0.0093  Score=47.54  Aligned_cols=22  Identities=27%  Similarity=0.237  Sum_probs=19.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~   46 (205)
                      -|++.|+||+|||+|++++.+.
T Consensus       208 GiLL~GPPGtGKT~lakAiA~~  229 (428)
T 4b4t_K          208 GVLLYGPPGTGKTMLVKAVANS  229 (428)
T ss_dssp             EEEEESCTTTTHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999988753

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=95.38  E-value=0.011  Score=43.21  Aligned_cols=23  Identities=22%  Similarity=0.317  Sum_probs=20.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~   46 (205)
                      ..|++.|..|+||||+++.+...
T Consensus         3 ~~i~~~G~~g~GKtt~~~~l~~~   25 (241)
T 2ocp_A            3 RRLSIEGNIAVGKSTFVKLLTKT   25 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Confidence            57899999999999999887653

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=95.38  E-value=0.009  Score=45.72  Aligned_cols=24  Identities=17%  Similarity=0.128  Sum_probs=20.5

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcC
Q psy15714         23 ALKVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        23 ~~ki~v~G~~~~GKstli~~~~~~   46 (205)
                      .-.+++.|++|+|||+|++++...
T Consensus        51 ~~~vLl~GppGtGKT~la~aia~~   74 (322)
T 3eie_A           51 TSGILLYGPPGTGKSYLAKAVATE   74 (322)
T ss_dssp             CCEEEEECSSSSCHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHH
Confidence            347999999999999999888653

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=95.37  E-value=0.11  Score=39.56  Aligned_cols=45  Identities=9%  Similarity=-0.002  Sum_probs=26.0

Q ss_pred             cEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccc
Q psy15714         96 DCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLR  140 (205)
Q Consensus        96 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  140 (205)
                      ..-++++|=-+.-+-......++..++....++++|+..|..+..
T Consensus       105 ~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l  149 (324)
T 3u61_B          105 RQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGI  149 (324)
T ss_dssp             CEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGS
T ss_pred             CCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCcccc
Confidence            455555554443331222335666666655678888888877643

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=95.34  E-value=0.0089  Score=42.85  Aligned_cols=23  Identities=17%  Similarity=0.294  Sum_probs=19.8

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhc
Q psy15714         23 ALKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        23 ~~ki~v~G~~~~GKstli~~~~~   45 (205)
                      .+.|++.|.+|+||||+.+.+..
T Consensus         3 ~~~i~i~G~~gsGkst~~~~l~~   25 (219)
T 2h92_A            3 AINIALDGPAAAGKSTIAKRVAS   25 (219)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999987765

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.34  E-value=0.0096  Score=45.83  Aligned_cols=22  Identities=23%  Similarity=0.280  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~   46 (205)
                      .+++.|++|+|||++++.+...
T Consensus        60 ~~ll~G~~G~GKT~la~~la~~   81 (353)
T 1sxj_D           60 HMLFYGPPGTGKTSTILALTKE   81 (353)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3899999999999999877653

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=95.33  E-value=0.014  Score=45.34  Aligned_cols=22  Identities=23%  Similarity=0.176  Sum_probs=18.7

Q ss_pred             eeEEEEECCCCCCHHHHHHHHh
Q psy15714         23 ALKVTTVGDGMVGKTCLLITHT   44 (205)
Q Consensus        23 ~~ki~v~G~~~~GKstli~~~~   44 (205)
                      ..+|+++|++|+||||+.+.+.
T Consensus        24 ~~~i~l~G~~G~GKTTl~~~la   45 (359)
T 2ga8_A           24 RVCVILVGSPGSGKSTIAEELC   45 (359)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHH
T ss_pred             eeEEEEECCCCCcHHHHHHHHH
Confidence            3589999999999999986554

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=95.30  E-value=0.011  Score=49.31  Aligned_cols=22  Identities=23%  Similarity=0.300  Sum_probs=19.7

Q ss_pred             EEEECCCCCCHHHHHHHHhcCC
Q psy15714         26 VTTVGDGMVGKTCLLITHTENK   47 (205)
Q Consensus        26 i~v~G~~~~GKstli~~~~~~~   47 (205)
                      ++++|+.|+|||||++.+.+-.
T Consensus       381 v~iiG~NGsGKSTLlk~l~Gl~  402 (608)
T 3j16_B          381 LVMMGENGTGKTTLIKLLAGAL  402 (608)
T ss_dssp             EEEESCTTSSHHHHHHHHHTSS
T ss_pred             EEEECCCCCcHHHHHHHHhcCC
Confidence            7999999999999999888754

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=95.29  E-value=0.0091  Score=46.34  Aligned_cols=24  Identities=25%  Similarity=0.033  Sum_probs=20.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCC
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTENK   47 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~~   47 (205)
                      --+.|+|++|+|||||++.+....
T Consensus       132 ~i~~I~G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          132 AITEVFGEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            367999999999999998887653

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=95.29  E-value=0.0063  Score=50.55  Aligned_cols=21  Identities=29%  Similarity=0.229  Sum_probs=18.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q psy15714         25 KVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~   45 (205)
                      .++++|+.|+|||||++.+.+
T Consensus       369 ~~~ivG~sGsGKSTll~~l~g  389 (578)
T 4a82_A          369 TVAFVGMSGGGKSTLINLIPR  389 (578)
T ss_dssp             EEEEECSTTSSHHHHHTTTTT
T ss_pred             EEEEECCCCChHHHHHHHHhc
Confidence            689999999999999976554

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.27  E-value=0.011  Score=47.30  Aligned_cols=24  Identities=21%  Similarity=0.097  Sum_probs=20.7

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcC
Q psy15714         23 ALKVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        23 ~~ki~v~G~~~~GKstli~~~~~~   46 (205)
                      .--|++.|+||+|||+|++++.+.
T Consensus       215 prGvLLyGPPGTGKTllAkAiA~e  238 (434)
T 4b4t_M          215 PKGALMYGPPGTGKTLLARACAAQ  238 (434)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCeeEEECcCCCCHHHHHHHHHHH
Confidence            346999999999999999988764

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=95.27  E-value=0.0046  Score=45.88  Aligned_cols=21  Identities=33%  Similarity=0.221  Sum_probs=18.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q psy15714         25 KVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~   45 (205)
                      -+++.|++|+|||+|++++..
T Consensus        46 ~vll~G~~GtGKT~la~~la~   66 (268)
T 2r62_A           46 GVLLVGPPGTGKTLLAKAVAG   66 (268)
T ss_dssp             CCCCBCSSCSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            389999999999999988775

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=95.27  E-value=0.014  Score=44.74  Aligned_cols=22  Identities=23%  Similarity=0.291  Sum_probs=19.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHhc
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~   45 (205)
                      ..|+|+|++|+|||||...+..
T Consensus         6 ~~i~i~GptGsGKTtla~~La~   27 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALAD   27 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999877764

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=95.24  E-value=0.009  Score=46.47  Aligned_cols=24  Identities=21%  Similarity=0.050  Sum_probs=20.2

Q ss_pred             eeeEEEEECCCCCCHHHHHHHHhc
Q psy15714         22 KALKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        22 ~~~ki~v~G~~~~GKstli~~~~~   45 (205)
                      ..-.+++.|++|+|||+|++.+..
T Consensus        43 ~~~~vll~G~~G~GKT~l~~~~~~   66 (387)
T 2v1u_A           43 KPSNALLYGLTGTGKTAVARLVLR   66 (387)
T ss_dssp             CCCCEEECBCTTSSHHHHHHHHHH
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHH
Confidence            344789999999999999987764

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.21  E-value=0.011  Score=47.16  Aligned_cols=24  Identities=25%  Similarity=0.124  Sum_probs=20.6

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcC
Q psy15714         23 ALKVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        23 ~~ki~v~G~~~~GKstli~~~~~~   46 (205)
                      .--|++.|+||+|||+|++++.+.
T Consensus       215 prGvLL~GPPGtGKTllAkAiA~e  238 (437)
T 4b4t_L          215 PKGVLLYGPPGTGKTLLAKAVAAT  238 (437)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHH
Confidence            346999999999999999988753

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=95.20  E-value=0.0098  Score=43.26  Aligned_cols=24  Identities=25%  Similarity=0.133  Sum_probs=17.3

Q ss_pred             eeeEEEEECCCCCCHHHHHHHHhc
Q psy15714         22 KALKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        22 ~~~ki~v~G~~~~GKstli~~~~~   45 (205)
                      +..-|++.|++|+||||+++.+..
T Consensus        24 ~g~~I~~eG~~GsGKsT~~~~l~~   47 (227)
T 3v9p_A           24 RGKFITFEGIDGAGKTTHLQWFCD   47 (227)
T ss_dssp             CCCEEEEECCC---CHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999999977653

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=95.19  E-value=0.01  Score=46.10  Aligned_cols=23  Identities=22%  Similarity=0.261  Sum_probs=19.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~   46 (205)
                      -.+++.|++|+|||+|++++...
T Consensus        71 ~~vLl~GppGtGKT~la~~la~~   93 (368)
T 3uk6_A           71 RAVLIAGQPGTGKTAIAMGMAQA   93 (368)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            37999999999999999887643

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=95.17  E-value=0.0085  Score=49.85  Aligned_cols=22  Identities=23%  Similarity=0.247  Sum_probs=19.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~   46 (205)
                      .++++|+.|+|||||++.+.+-
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g~  392 (587)
T 3qf4_A          371 LVAVLGETGSGKSTLMNLIPRL  392 (587)
T ss_dssp             EEEEECSSSSSHHHHHHTTTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999876653

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=95.13  E-value=0.013  Score=43.42  Aligned_cols=24  Identities=17%  Similarity=0.095  Sum_probs=20.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCC
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTENK   47 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~~   47 (205)
                      ..+++.|++|+|||++++.+....
T Consensus        30 ~~vll~G~~GtGKt~la~~i~~~~   53 (265)
T 2bjv_A           30 KPVLIIGERGTGKELIASRLHYLS   53 (265)
T ss_dssp             SCEEEECCTTSCHHHHHHHHHHTS
T ss_pred             CCEEEECCCCCcHHHHHHHHHHhc
Confidence            568999999999999998887643

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=95.11  E-value=0.012  Score=45.68  Aligned_cols=23  Identities=17%  Similarity=0.125  Sum_probs=19.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~   46 (205)
                      -.|++.|++|+|||+|++++...
T Consensus        85 ~~iLL~GppGtGKT~la~ala~~  107 (355)
T 2qp9_X           85 SGILLYGPPGTGKSYLAKAVATE  107 (355)
T ss_dssp             CCEEEECSTTSCHHHHHHHHHHH
T ss_pred             ceEEEECCCCCcHHHHHHHHHHH
Confidence            35899999999999999887753

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=95.10  E-value=0.013  Score=44.90  Aligned_cols=23  Identities=26%  Similarity=0.238  Sum_probs=19.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~   46 (205)
                      --++|.|++|+|||||++.+...
T Consensus        32 ~~v~i~G~~G~GKT~Ll~~~~~~   54 (350)
T 2qen_A           32 PLTLLLGIRRVGKSSLLRAFLNE   54 (350)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCcCCHHHHHHHHHHH
Confidence            36899999999999999888754

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=95.10  E-value=0.012  Score=45.05  Aligned_cols=23  Identities=22%  Similarity=0.127  Sum_probs=19.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~   46 (205)
                      ..+++.|++|+|||+|++.+...
T Consensus        56 ~~vll~G~~GtGKT~la~~ia~~   78 (338)
T 3pfi_A           56 DHILFSGPAGLGKTTLANIISYE   78 (338)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECcCCCCHHHHHHHHHHH
Confidence            35899999999999999888654

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=95.09  E-value=0.017  Score=41.49  Aligned_cols=24  Identities=29%  Similarity=0.112  Sum_probs=20.1

Q ss_pred             eeeEEEEECCCCCCHHHHHHHHhc
Q psy15714         22 KALKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        22 ~~~ki~v~G~~~~GKstli~~~~~   45 (205)
                      +..-|++.|.+|+||||+++.+..
T Consensus         5 ~g~~i~~eG~~gsGKsT~~~~l~~   28 (213)
T 4edh_A            5 TGLFVTLEGPEGAGKSTNRDYLAE   28 (213)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHH
Confidence            446789999999999999977653

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=95.08  E-value=0.015  Score=44.36  Aligned_cols=23  Identities=26%  Similarity=0.288  Sum_probs=19.6

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhc
Q psy15714         23 ALKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        23 ~~ki~v~G~~~~GKstli~~~~~   45 (205)
                      .-.+++.|++|+|||+|+.++..
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~  174 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAH  174 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999977654

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=95.06  E-value=0.013  Score=47.05  Aligned_cols=22  Identities=27%  Similarity=0.187  Sum_probs=19.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHhc
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~   45 (205)
                      --+++.|++|+|||+|++.+.+
T Consensus       131 ~~lll~Gp~G~GKTtLa~aia~  152 (440)
T 2z4s_A          131 NPLFIYGGVGLGKTHLLQSIGN  152 (440)
T ss_dssp             CCEEEECSSSSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999987765

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=95.05  E-value=0.014  Score=40.78  Aligned_cols=21  Identities=14%  Similarity=0.147  Sum_probs=18.9

Q ss_pred             EEEECCCCCCHHHHHHHHhcC
Q psy15714         26 VTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        26 i~v~G~~~~GKstli~~~~~~   46 (205)
                      ++|+|.++||||+|..++...
T Consensus         2 ilV~Gg~~SGKS~~A~~la~~   22 (180)
T 1c9k_A            2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCCcHHHHHHHHHhc
Confidence            789999999999999988754

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=95.02  E-value=0.013  Score=47.72  Aligned_cols=21  Identities=38%  Similarity=0.305  Sum_probs=19.2

Q ss_pred             EEEECCCCCCHHHHHHHHhcC
Q psy15714         26 VTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        26 i~v~G~~~~GKstli~~~~~~   46 (205)
                      ++++|++|+|||+|++.+.+.
T Consensus        67 vLL~GppGtGKTtLaraIa~~   87 (499)
T 2dhr_A           67 VLLVGPPGVGKTHLARAVAGE   87 (499)
T ss_dssp             EEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            999999999999999988764

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.02  E-value=0.014  Score=46.11  Aligned_cols=23  Identities=26%  Similarity=0.147  Sum_probs=20.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~   46 (205)
                      --|++.|+||+|||.|++++.+.
T Consensus       183 rGvLL~GPPGTGKTllAkAiA~e  205 (405)
T 4b4t_J          183 KGVILYGPPGTGKTLLARAVAHH  205 (405)
T ss_dssp             CCEEEESCSSSSHHHHHHHHHHH
T ss_pred             CceEEeCCCCCCHHHHHHHHHHh
Confidence            35899999999999999988753

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=95.02  E-value=0.015  Score=44.95  Aligned_cols=19  Identities=26%  Similarity=0.267  Sum_probs=16.8

Q ss_pred             EEEECCCCCCHHHHHHHHh
Q psy15714         26 VTTVGDGMVGKTCLLITHT   44 (205)
Q Consensus        26 i~v~G~~~~GKstli~~~~   44 (205)
                      .+|+|+.|+|||||+.++.
T Consensus        26 ~~i~G~NGsGKS~lleAi~   44 (339)
T 3qkt_A           26 NLIIGQNGSGKSSLLDAIL   44 (339)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            3799999999999998864

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=95.01  E-value=0.013  Score=48.29  Aligned_cols=21  Identities=29%  Similarity=0.262  Sum_probs=18.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q psy15714         25 KVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~   45 (205)
                      .++++|++|+|||||++.+.+
T Consensus       110 ~vll~Gp~GtGKTtlar~ia~  130 (543)
T 3m6a_A          110 ILCLAGPPGVGKTSLAKSIAK  130 (543)
T ss_dssp             EEEEESSSSSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999987764

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=95.01  E-value=0.014  Score=47.27  Aligned_cols=21  Identities=29%  Similarity=0.211  Sum_probs=19.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q psy15714         25 KVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~   45 (205)
                      -++++|++|+|||+|++++.+
T Consensus        51 gvLL~GppGtGKT~Laraia~   71 (476)
T 2ce7_A           51 GILLVGPPGTGKTLLARAVAG   71 (476)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            499999999999999988876

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=95.00  E-value=0.014  Score=45.40  Aligned_cols=24  Identities=17%  Similarity=0.063  Sum_probs=20.6

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcC
Q psy15714         23 ALKVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        23 ~~ki~v~G~~~~GKstli~~~~~~   46 (205)
                      .-.+++.|++|+|||+|++++...
T Consensus       117 ~~~vLl~GppGtGKT~la~aia~~  140 (357)
T 3d8b_A          117 PKGILLFGPPGTGKTLIGKCIASQ  140 (357)
T ss_dssp             CSEEEEESSTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            447999999999999999888653

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=94.99  E-value=0.014  Score=44.96  Aligned_cols=22  Identities=32%  Similarity=0.362  Sum_probs=19.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHhc
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~   45 (205)
                      .-|+|+|++|||||||..++..
T Consensus         8 ~lI~I~GptgSGKTtla~~La~   29 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAK   29 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCcCcHHHHHHHHHH
Confidence            4689999999999999877664

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=94.98  E-value=0.02  Score=44.05  Aligned_cols=22  Identities=23%  Similarity=0.203  Sum_probs=19.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHhc
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~   45 (205)
                      .-|+|+|+.|+|||+|...+..
T Consensus        41 ~lIvI~GPTgsGKTtLa~~LA~   62 (339)
T 3a8t_A           41 KLLVLMGATGTGKSRLSIDLAA   62 (339)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHT
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999987775

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=94.97  E-value=0.013  Score=45.66  Aligned_cols=22  Identities=18%  Similarity=0.001  Sum_probs=19.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHhc
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~   45 (205)
                      -.+++.|++|+|||+|++.+..
T Consensus        46 ~~vll~G~~G~GKT~la~~l~~   67 (384)
T 2qby_B           46 FSNLFLGLTGTGKTFVSKYIFN   67 (384)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999987765

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=94.96  E-value=0.015  Score=45.52  Aligned_cols=24  Identities=21%  Similarity=0.228  Sum_probs=20.4

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcC
Q psy15714         23 ALKVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        23 ~~ki~v~G~~~~GKstli~~~~~~   46 (205)
                      ...+++.|++|+|||++++.+...
T Consensus        72 ~~~ill~Gp~GtGKT~la~~la~~   95 (376)
T 1um8_A           72 KSNILLIGPTGSGKTLMAQTLAKH   95 (376)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHH
Confidence            346999999999999999887653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	205
d2ngra_	191	c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId:	2e-40
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	8e-39
d1kmqa_	177	c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9	5e-38
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	7e-38
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	1e-37
d2atxa1	185	c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax	5e-37
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	1e-36
d1m7ba_	179	c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T	3e-36
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	3e-34
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	3e-33
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	8e-33
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	1e-32
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	1e-32
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	2e-31
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	2e-31
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	6e-31
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	1e-29
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	2e-28
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	2e-28
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	2e-28
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	7e-28
d1c1ya_	167	c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId:	2e-27
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	2e-26
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	8e-26
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	1e-25
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	1e-25
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	2e-25
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	5e-25
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	8e-25
d2erya1	171	c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [	6e-24
d1z0ja1	167	c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [	1e-23
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	3e-23
d1x1ra1	169	c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa	7e-22
d1i2ma_	170	c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96	1e-20
d1z2aa1	164	c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta	3e-20
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	8e-20
d2bmja1	175	c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H	2e-19
d1xtqa1	167	c.37.1.8 (A:3-169) GTP-binding protein RheB {Human	4e-19
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	6e-19
d2atva1	168	c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro	1e-18
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	6e-18
d1f6ba_	186	c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr	1e-17
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	4e-17
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	8e-17
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	2e-16
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	3e-16
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	1e-15
d2g3ya1	172	c.37.1.8 (A:73-244) GTP-binding protein GEM {Human	5e-15
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	9e-15
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	8e-14
d2gjsa1	168	c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax	1e-13
d1svsa1	195	c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub	1e-12
d2bcjq2	200	c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub	1e-11
d2fh5b1	207	c.37.1.8 (B:63-269) Signal recognition particle re	3e-09
d1zcba2	200	c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub	2e-07
d1azta2	221	c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub	4e-07
d2gj8a1	161	c.37.1.8 (A:216-376) Probable tRNA modification GT	3e-05
d1nrjb_	209	c.37.1.8 (B:) Signal recognition particle receptor	4e-05
d1tq4a_	400	c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (	1e-04
d1mkya2	186	c.37.1.8 (A:173-358) Probable GTPase Der, N-termin	5e-04
d2cxxa1	184	c.37.1.8 (A:2-185) GTP-binding protein engB {Pyroc	8e-04

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  134 bits (337), Expect = 2e-40
 Identities = 94/188 (50%), Positives = 130/188 (69%), Gaps = 4/188 (2%)

Query: 22  KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
           + +K   VGDG VGKTCLLI++T NKFP++YVPTVFDNY  T+ +  + Y + L+DTAGQ
Sbjct: 2   QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 61

Query: 82  EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
           EDY+RLRP+SYP TD FL+CFS+ S SS+EN+  KW PE+ HHCPK P +LVGT+ DLR 
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 121

Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV---- 197
           +  TI+K    +   ++    +K+ R +KA +Y+ECSA   +GL  VF  A+ +A+    
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPE 181

Query: 198 KKQDKSCC 205
            K+ + C 
Sbjct: 182 PKKSRRCV 189

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  129 bits (325), Expect = 8e-39
 Identities = 43/177 (24%), Positives = 88/177 (49%), Gaps = 15/177 (8%)

Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQE 82
           +K+  +GD  VGK+CLL+   E+KF   ++ T+  ++   T+ ++ K   + +WDTAGQE
Sbjct: 3   MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 62

Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSE 142
            +  +    Y      +L + I    ++ NI   +    +H   +  ++LVG K+D+ + 
Sbjct: 63  RFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETR 122

Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKK 199
             T D             QG+ + +++    ++E SAK ++ ++++F    +   +K
Sbjct: 123 VVTAD-------------QGEALAKELG-IPFIESSAKNDDNVNEIFFTLAKLIQEK 165

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  127 bits (320), Expect = 5e-38
 Identities = 91/175 (52%), Positives = 120/175 (68%)

Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQED 83
            K+  VGDG  GKTCLLI +++++FP  YVPTVF+NY   I VD K  ++ LWDTAG ED
Sbjct: 3   KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLED 62

Query: 84  YERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSEN 143
           Y+RLRP+SYP+TD  L+CFSI S  S ENI  KW PE+KH CP VPIILVG K DLR++ 
Sbjct: 63  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 122

Query: 144 KTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVK 198
            T  +    + + V   +G+ M  +I A  Y+ECSAK  +G+ +VF  A R+A++
Sbjct: 123 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 177

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  127 bits (319), Expect = 7e-38
 Identities = 97/179 (54%), Positives = 128/179 (71%)

Query: 22  KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
           +A+K   VGDG VGKTCLLI++T N FP +Y+PTVFDNY   + VD K  ++ LWDTAGQ
Sbjct: 4   QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 63

Query: 82  EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
           EDY+RLRP+SYP TD  L+CFS+ S +S+EN+ +KWYPE++HHCP  PIILVGTK DLR 
Sbjct: 64  EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 123

Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQ 200
           +  TI+K K  ++  ++  QG  M ++I A +YLECSA    GL  VF  A+R+ +   
Sbjct: 124 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 182

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  126 bits (318), Expect = 1e-37
 Identities = 48/186 (25%), Positives = 84/186 (45%), Gaps = 14/186 (7%)

Query: 18  KSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLW 76
           K+     K+  +GD  VGKTC+L   +E+ F + ++ T+  ++   TI +D K   + +W
Sbjct: 1   KTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIW 60

Query: 77  DTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTK 136
           DTAGQE +  +    Y      +L + I +  S++NI +      +H    V  +++G  
Sbjct: 61  DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGN- 119

Query: 137 ADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSA 196
                      K    +   VS  +G+K+       +++E SAK N  ++  F    R  
Sbjct: 120 -----------KCDVNDKRQVSKERGEKLALDYG-IKFMETSAKANINVENAFFTLARDI 167

Query: 197 VKKQDK 202
             K DK
Sbjct: 168 KAKMDK 173

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  125 bits (314), Expect = 5e-37
 Identities = 83/173 (47%), Positives = 120/173 (69%)

Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQED 83
           LK   VGDG VGKTCLL+++  + FP +YVPTVFD+Y  ++TV  K Y + L+DTAGQED
Sbjct: 10  LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQED 69

Query: 84  YERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSEN 143
           Y+RLRP+SYP TD FL+CFS+ + +S++N+  +W PELK + P VP +L+GT+ DLR + 
Sbjct: 70  YDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDP 129

Query: 144 KTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSA 196
           KT+ +    +   +   QG+K+ ++I A  Y+ECSA   +GL  VF  A+ + 
Sbjct: 130 KTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAI 182

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  123 bits (310), Expect = 1e-36
 Identities = 41/178 (23%), Positives = 77/178 (43%), Gaps = 14/178 (7%)

Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQE 82
            K+  +G+  VGKTCL+   T+  FP     T+  D    T+ ++ +   + +WDTAGQE
Sbjct: 6   FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE 65

Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSE 142
            +  +    Y + +  +L + I    S+  +        ++   KV  +LVG K DL   
Sbjct: 66  RFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAER 125

Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQ 200
            +                Q  +   + +   YLE SAK ++ ++++F+      + + 
Sbjct: 126 REVSQ-------------QRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEA 170

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  123 bits (308), Expect = 3e-36
 Identities = 68/177 (38%), Positives = 106/177 (59%), Gaps = 1/177 (0%)

Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQED 83
            K+  VGD   GKT LL    ++ FP +YVPTVF+NY  +  +D +  +++LWDT+G   
Sbjct: 3   CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPY 62

Query: 84  YERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSEN 143
           Y+ +RP+SYP++D  L+CF I    + +++L KW  E++  CP   ++LVG K+DLR++ 
Sbjct: 63  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDV 122

Query: 144 KTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNE-GLDQVFIAAVRSAVKK 199
            T+ +        VS  QG  M ++I AA Y+ECSA  +E  +  +F  A  + V K
Sbjct: 123 STLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVNK 179

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  118 bits (296), Expect = 3e-34
 Identities = 38/181 (20%), Positives = 76/181 (41%), Gaps = 14/181 (7%)

Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQE 82
            K+  +G+  VGK+CLL+  +++ +  DY+ T+  ++   T+ +D KT  + +WDTAGQE
Sbjct: 7   FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 66

Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSE 142
            +  +    Y  +   ++ + +    S+  +        ++    V  +LVG K DL+ +
Sbjct: 67  RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDK 126

Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQDK 202
                                K         +LE SA  +  ++  F+   R   +   +
Sbjct: 127 RVVEYDV-------------AKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQ 173

Query: 203 S 203
            
Sbjct: 174 Q 174

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  115 bits (288), Expect = 3e-33
 Identities = 47/180 (26%), Positives = 74/180 (41%), Gaps = 14/180 (7%)

Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPD-TITVDNKTYDVTLWDTAGQE 82
            KV  +GD  VGK+ LL   T N+F  +   T+   +   +I VD KT    +WDTAGQE
Sbjct: 5   FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 64

Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSE 142
            Y R+    Y      LL + I    +YEN+         H    + I+LVG K+DLR  
Sbjct: 65  RYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 124

Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQDK 202
                 +              +   +     ++E SA  +  +++ F   +    +   +
Sbjct: 125 RAVPTDE-------------ARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQ 171

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  114 bits (285), Expect = 8e-33
 Identities = 41/181 (22%), Positives = 76/181 (41%), Gaps = 14/181 (7%)

Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYP-DTITVDNKTYDVTLWDTAGQE 82
            K   +GD  VGK+CLL+  T+ +F   +  T+   +    + +D K   + +WDTAGQE
Sbjct: 4   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE 63

Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSE 142
            +  +    Y      LL + I    ++ ++ S      +H    + I+L+G K+DL S 
Sbjct: 64  SFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESR 123

Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQDK 202
                             +  +   +     ++E SAK    +++ FI   +   +K  +
Sbjct: 124 RDVK-------------REEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQ 170

Query: 203 S 203
            
Sbjct: 171 G 171

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  113 bits (284), Expect = 1e-32
 Identities = 43/180 (23%), Positives = 68/180 (37%), Gaps = 14/180 (7%)

Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQE 82
            K   +G+   GK+CLL    E KF  D   T+   +    I V  K   + +WDTAGQE
Sbjct: 6   FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 65

Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSE 142
            +  +    Y      LL + I S  +Y  + +            + IIL G K DL ++
Sbjct: 66  RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDAD 125

Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQDK 202
            +                       +     +LE SA   E +++ F+   R  + K + 
Sbjct: 126 REVTF-------------LEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIES 172

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  113 bits (283), Expect = 1e-32
 Identities = 48/172 (27%), Positives = 72/172 (41%), Gaps = 14/172 (8%)

Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDN-YPDTITVDNKTYDVTLWDTAGQE 82
            K   +GD  VGK+CLL   TE KF  D   T+        I V  +   + +WDTAGQE
Sbjct: 5   FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE 64

Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSE 142
            +  +    Y      L+ + I   S+Y ++ S          P   IIL+G KADL ++
Sbjct: 65  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQ 124

Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
                             + K+   +     +LE SAK  E ++  F+ A +
Sbjct: 125 RDVT------------YEEAKQFAEENG-LLFLEASAKTGENVEDAFLEAAK 163

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  110 bits (276), Expect = 2e-31
 Identities = 43/177 (24%), Positives = 71/177 (40%), Gaps = 14/177 (7%)

Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPD-TITVDNKTYDVTLWDTAGQE 82
            K+  +G+  VGKT  L  + ++ F   +V TV  ++   TI  ++K   + +WDTAGQE
Sbjct: 6   FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQE 65

Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSE 142
            Y  +    Y     F+L + I +  S+  +         +      ++LVG K D+  E
Sbjct: 66  RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDE 125

Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKK 199
                             +  +        E+ E SAK N  + Q F   V    +K
Sbjct: 126 RVVSS-------------ERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEK 169

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  110 bits (275), Expect = 2e-31
 Identities = 51/174 (29%), Positives = 83/174 (47%), Gaps = 14/174 (8%)

Query: 22  KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
           +  KV  +G G VGK+ L +      F   Y PT+ D Y   I VD+    + + DTAG 
Sbjct: 2   REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGT 61

Query: 82  EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHH-CPKVPIILVGTKADLR 140
           E +  +R +   N   F+L +S+ +  S+++I       ++     KVP+ILVG K DL 
Sbjct: 62  EQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLE 121

Query: 141 SENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
           SE +              +S+G+ +  +     ++E SAK    +D++F   VR
Sbjct: 122 SEREVS------------SSEGRALAEEWGCP-FMETSAKSKTMVDELFAEIVR 162

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (273), Expect = 6e-31
 Identities = 46/192 (23%), Positives = 82/192 (42%), Gaps = 25/192 (13%)

Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-----------PDTITVDNKTYD 72
           +K+  +GD  VGKT  L  +T+NKF   ++ TV  ++           P+  +       
Sbjct: 6   IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 65

Query: 73  VTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHH-CPKVPII 131
           + LWDTAGQE +  L    + +   FLL F + S  S+ N+ +       +  C    I+
Sbjct: 66  LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 125

Query: 132 LVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIA 191
           L+G KADL  + +                Q +++  K     Y E SA   + +++    
Sbjct: 126 LIGNKADLPDQREVN------------ERQARELADKYG-IPYFETSAATGQNVEKAVET 172

Query: 192 AVRSAVKKQDKS 203
            +   +K+ ++ 
Sbjct: 173 LLDLIMKRMEQC 184

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  105 bits (262), Expect = 1e-29
 Identities = 38/171 (22%), Positives = 70/171 (40%), Gaps = 14/171 (8%)

Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITV-DNKTYDVTLWDTAGQED 83
           K+  +G+  VGKT L+     + F   Y  T+  ++       +++T  + LWDTAGQE 
Sbjct: 2   KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQER 61

Query: 84  YERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSEN 143
           +  L P    ++   ++ + I + +S++                V I+LVG K DL  + 
Sbjct: 62  FRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKR 121

Query: 144 KTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
           +                +  + + K     ++E SAK    + Q+F     
Sbjct: 122 QVSI-------------EEGERKAKELNVMFIETSAKAGYNVKQLFRRVAA 159

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  103 bits (256), Expect = 2e-28
 Identities = 41/176 (23%), Positives = 74/176 (42%), Gaps = 14/176 (7%)

Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVF-DNYPDTITVDNKTYDVTLWDTAGQE 82
           LK+  +G+  VGK+ LL+  T++ F  +   T+  D    TI+VD     + +WDTAGQE
Sbjct: 8   LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 67

Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSE 142
            +  L P  Y      +L + +    ++  + +       +      + ++         
Sbjct: 68  RFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNML--------- 118

Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVK 198
              +  K   E   V  ++G K  RK     ++E SAK  +G+   F   V   ++
Sbjct: 119 ---VGNKIDKENREVDRNEGLKFARKHS-MLFIEASAKTCDGVQCAFEELVEKIIQ 170

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (255), Expect = 2e-28
 Identities = 53/182 (29%), Positives = 80/182 (43%), Gaps = 14/182 (7%)

Query: 22  KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
           +  K+  VG G VGK+ L I   ++ F +DY PT+ D+Y    +VD     + + DTAGQ
Sbjct: 5   ETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQ 64

Query: 82  EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHH-CPKVPIILVGTKADLR 140
           E++  +R         FLL F+I    S+  +   +   L+       P++LVG KADL 
Sbjct: 65  EEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLE 124

Query: 141 SENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQ 200
           S+                               Y E SAKL   +D+ F   VR+  K Q
Sbjct: 125 SQR-------------QVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQ 171

Query: 201 DK 202
           ++
Sbjct: 172 EQ 173

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (255), Expect = 2e-28
 Identities = 44/173 (25%), Positives = 73/173 (42%), Gaps = 15/173 (8%)

Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDT--ITVDNKTYDVTLWDTAGQ 81
            KV  VGD  VGKTCLL+   +  F      +          + VD     + +WDTAGQ
Sbjct: 7   FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQ 66

Query: 82  EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
           E +  +    Y +    LL + + + +S++NI +      ++    V ++L+G K D   
Sbjct: 67  ERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAH 126

Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
           E              V    G+K+ ++     ++E SAK    +D  F A  +
Sbjct: 127 ERV------------VKREDGEKLAKEYG-LPFMETSAKTGLNVDLAFTAIAK 166

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (252), Expect = 7e-28
 Identities = 52/181 (28%), Positives = 79/181 (43%), Gaps = 20/181 (11%)

Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQE 82
            KV  +GDG VGK+ L+  +  NKF T    T+   +    + VD     + +WDTAGQE
Sbjct: 7   FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 66

Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-----PKVPIILVGTKA 137
            +  LR   Y  +DC LL FS+  + S++N+ S W  E  ++         P +++G K 
Sbjct: 67  RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNL-SNWKKEFIYYADVKEPESFPFVILGNKI 125

Query: 138 DLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV 197
           D+     +             T + +   R      Y E SAK    +   F  AVR  +
Sbjct: 126 DISERQVS-------------TEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVL 172

Query: 198 K 198
            
Sbjct: 173 A 173

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (248), Expect = 2e-27
 Identities = 49/174 (28%), Positives = 80/174 (45%), Gaps = 13/174 (7%)

Query: 22  KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
           +  K+  +G G VGK+ L +   +  F   Y PT+ D+Y   + VD +   + + DTAG 
Sbjct: 2   REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGT 61

Query: 82  EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHH-CPKVPIILVGTKADLR 140
           E +  +R +   N   F L +SI + S++ ++       L+      VP+ILVG K DL 
Sbjct: 62  EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE 121

Query: 141 SENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
            E                  QG+ + R+     +LE SAK    ++++F   VR
Sbjct: 122 DERVV------------GKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVR 163

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.4 bits (241), Expect = 2e-26
 Identities = 40/175 (22%), Positives = 74/175 (42%), Gaps = 14/175 (8%)

Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTIT-VDNKTYDVTLWDTAGQED 83
           K+  +G+  VGK+ L++   + +F      T+   +      +D+ T    +WDTAGQE 
Sbjct: 8   KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 67

Query: 84  YERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSEN 143
           Y  L PM Y      ++ + I +  S+    +      +   P + I L G KADL ++ 
Sbjct: 68  YHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKR 127

Query: 144 KTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVK 198
                            Q  +      +  ++E SAK +  ++++F+A  +   K
Sbjct: 128 AV-------------DFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.8 bits (237), Expect = 8e-26
 Identities = 43/176 (24%), Positives = 87/176 (49%), Gaps = 14/176 (7%)

Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPD-TITVDNKTYDVTLWDTAGQE 82
            KV  +G+G VGKT L++ + ENKF   ++ T+  ++    + +  K  ++ +WDTAGQE
Sbjct: 4   FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQE 63

Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSE 142
            +  L P+ Y +++  +L + I    S++ + +      K    ++ + +VG K DL  E
Sbjct: 64  RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKE 123

Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVK 198
                          S  + +     +  A++   SAK N+G++++F+   +  ++
Sbjct: 124 RHV------------SIQEAESYAESVG-AKHYHTSAKQNKGIEELFLDLCKRMIE 166

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.4 bits (236), Expect = 1e-25
 Identities = 53/176 (30%), Positives = 86/176 (48%), Gaps = 17/176 (9%)

Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
           K+  VG G VGK+ L I   +N F  +Y PT+ D+Y   + +D +T  + + DTAGQE+Y
Sbjct: 5   KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64

Query: 85  ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHH--CPKVPIILVGTKADLRSE 142
             +R       + FL  F+I +T S+E+I  ++  ++K       VP++LVG K DL + 
Sbjct: 65  SAMRDQYMRTGEGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDLAAR 123

Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVK 198
                            S+  +   +     Y+E SAK  +G++  F   VR   +
Sbjct: 124 TV--------------ESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score = 95.4 bits (236), Expect = 1e-25
 Identities = 50/177 (28%), Positives = 80/177 (45%), Gaps = 16/177 (9%)

Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
           KV  VG G VGK+ L +    ++F  DY PT  D+Y   + +D +   + + DTAGQEDY
Sbjct: 6   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 65

Query: 85  ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELK--HHCPKVPIILVGTKADLRSE 142
             +R   + + + FL  FSI +        + +  ++        VP +LVG K+DL  +
Sbjct: 66  AAIRDNYFRSGEGFLCVFSI-TEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 124

Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKK 199
            +              + +  K R       Y+E SAK    +D+VF   +R    +
Sbjct: 125 RQV-------------SVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRAR 168

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 95.1 bits (235), Expect = 2e-25
 Identities = 48/183 (26%), Positives = 78/183 (42%), Gaps = 17/183 (9%)

Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPT--VFDNYPDTITVDNKTYDVTLWDTAGQ 81
           LKV  +GD  VGKT L+  +  +K+   Y  T        +     +K   + +WDTAGQ
Sbjct: 3   LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ 62

Query: 82  EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKH----HCPKVPIILVGTKA 137
           E ++ L    Y   DC +L + + + SS+ENI S     L H         P +++G K 
Sbjct: 63  ERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKI 122

Query: 138 DLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV 197
           D     K + +K             +++ + +        SAK    +D  F    RSA+
Sbjct: 123 DAEESKKIVSEK-----------SAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSAL 171

Query: 198 KKQ 200
           ++ 
Sbjct: 172 QQN 174

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 94.0 bits (232), Expect = 5e-25
 Identities = 41/177 (23%), Positives = 68/177 (38%), Gaps = 11/177 (6%)

Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDN-KTYDVTLWDTAGQE 82
           +K+  +G+  VGK+ +++    N F  +  PT+   +       N  T    +WDTAGQE
Sbjct: 4   IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63

Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSE 142
            +  L PM Y N    L+ + +    S+           +     + I LVG K D+  E
Sbjct: 64  RFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQE 123

Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKK 199
                             +  +   + K   + E SAK  E ++ VF+        K
Sbjct: 124 GGERKV----------AREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIPLK 170

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 93.6 bits (231), Expect = 8e-25
 Identities = 47/184 (25%), Positives = 79/184 (42%), Gaps = 18/184 (9%)

Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFD-NYPDTITVDNKTYDVTLWDTAGQE 82
           LKV  +GD  VGKT L+  +   KF   Y  T+        + VD++   + +WDTAGQE
Sbjct: 3   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 62

Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCP----KVPIILVGTKAD 138
            ++ L    Y   DC +L F + + ++++ + S     L    P      P +++G K D
Sbjct: 63  RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID 122

Query: 139 LRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVK 198
           L +                   + +          Y E SAK    ++Q F    R+A+K
Sbjct: 123 LENRQVATK-------------RAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALK 169

Query: 199 KQDK 202
           ++ +
Sbjct: 170 QETE 173

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.3 bits (225), Expect = 6e-24
 Identities = 53/178 (29%), Positives = 85/178 (47%), Gaps = 14/178 (7%)

Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
           ++  VG G VGK+ L I   ++ F TDY PT+ D+Y     +D++   + + DTAGQE++
Sbjct: 7   RLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEF 66

Query: 85  ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELK-HHCPKVPIILVGTKADLRSEN 143
             +R       + FLL FS+    S+E I       L+     + P+IL+G KADL  + 
Sbjct: 67  GAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQR 126

Query: 144 KTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQD 201
           +   ++              +   +     Y+E SAK+   +DQ F   VR   K Q+
Sbjct: 127 QVTQEE-------------GQQLARQLKVTYMEASAKIRMNVDQAFHELVRVIRKFQE 171

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 90.5 bits (223), Expect = 1e-23
 Identities = 41/174 (23%), Positives = 76/174 (43%), Gaps = 14/174 (8%)

Query: 22  KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAG 80
           + LKV  +GD  VGK+ ++    E+ F  +  PT+       T+   N+ +   +WDTAG
Sbjct: 3   RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAG 62

Query: 81  QEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLR 140
            E +  L PM Y  +   ++ + I    ++  + +      +H  P + + + G K DL 
Sbjct: 63  LERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLT 122

Query: 141 SENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
              + +++              K     I  A ++E SAK    ++++FI   R
Sbjct: 123 DVREVMER------------DAKDYADSIH-AIFVETSAKNAININELFIEISR 163

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.3 bits (220), Expect = 3e-23
 Identities = 47/178 (26%), Positives = 80/178 (44%), Gaps = 15/178 (8%)

Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
           +V   G G VGK+ L++   +  F   Y+PTV D Y   I+ D     + + DT G   +
Sbjct: 4   RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQF 63

Query: 85  ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWY--PELKHHCPKVPIILVGTKADLRSE 142
             ++ +S      F+L +SI S  S E +   +    E+K     +PI+LVG K D    
Sbjct: 64  PAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPS 123

Query: 143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQ 200
            +              +S+ + + R  K A ++E SAKLN  + ++F   +    ++ 
Sbjct: 124 REV------------QSSEAEALARTWKCA-FMETSAKLNHNVKELFQELLNLEKRRT 168

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 85.9 bits (211), Expect = 7e-22
 Identities = 56/177 (31%), Positives = 84/177 (47%), Gaps = 15/177 (8%)

Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
           K+  VGDG VGK+ L I   +  F  DY PT+ D+Y     +DN+   + + DTAGQE++
Sbjct: 6   KLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEF 65

Query: 85  ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHH-CPKVPIILVGTKADLRSEN 143
             +R       D FL+ +S+   +S+E++       L+       P+ILV  K DL    
Sbjct: 66  SAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLR 125

Query: 144 KTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAK-LNEGLDQVFIAAVRSAVKK 199
           K            V+  QGK+M  K     Y+E SAK     +D+ F   VR   ++
Sbjct: 126 K------------VTRDQGKEMATKYNIP-YIETSAKDPPLNVDKTFHDLVRVIRQQ 169

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.4 bits (202), Expect = 1e-20
 Identities = 46/176 (26%), Positives = 75/176 (42%), Gaps = 17/176 (9%)

Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTV-FDNYPDTITVDNKTYDVTLWDTAGQED 83
           K+  VGDG  GKT  +  H   +F   YV T+  + +P     +       +WDTAGQE 
Sbjct: 5   KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 64

Query: 84  YERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSEN 143
           +  LR   Y    C ++ F + S  +Y+N+   W+ +L   C  +PI+L G K D++   
Sbjct: 65  FGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDRK 123

Query: 144 KTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKK 199
                                +  + K  +Y + SAK N   ++ F+   R  +  
Sbjct: 124 ---------------VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD 164

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 81.3 bits (199), Expect = 3e-20
 Identities = 42/177 (23%), Positives = 80/177 (45%), Gaps = 15/177 (8%)

Query: 23  ALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYP-DTITVDNKTYDVTLWDTAGQ 81
           A+K+  VG+G VGK+ ++  + +  F  DY  T+  ++    I V+++   + LWDTAGQ
Sbjct: 2   AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQ 61

Query: 82  EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
           E+++ +    Y      +L FS     S+E I S W  ++      +P  LV  K DL  
Sbjct: 62  EEFDAITKAYYRGAQACVLVFSTTDRESFEAI-SSWREKVVAEVGDIPTALVQNKIDLL- 119

Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVK 198
                      +   +   + + + +++K   +   S K +  + +VF       ++
Sbjct: 120 -----------DDSCIKNEEAEGLAKRLK-LRFYRTSVKEDLNVSEVFKYLAEKHLQ 164

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 80.5 bits (197), Expect = 8e-20
 Identities = 43/174 (24%), Positives = 73/174 (41%), Gaps = 19/174 (10%)

Query: 22  KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYP-DTITVDNKTYDVTLWDTAG 80
           +  K+  +GD  VGKTCL       +FP     T+  ++    + +D +   + LWDTAG
Sbjct: 1   RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAG 60

Query: 81  QEDYERLRPMSY-PNTDCFLLCFSIGSTSSYENILSKWYPELKHH-CPKVPIILVGTKAD 138
           QE + +     Y  N    +  + + + +S+ ++ +      +H     +P ILVG K D
Sbjct: 61  QERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCD 120

Query: 139 LRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAK---LNEGLDQVF 189
           LRS  +              T   +K           E SAK    N+ ++ +F
Sbjct: 121 LRSAIQVP------------TDLAQKFADTHSMP-LFETSAKNPNDNDHVEAIF 161

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.3 bits (194), Expect = 2e-19
 Identities = 31/183 (16%), Positives = 66/183 (36%), Gaps = 19/183 (10%)

Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQED 83
           L++  +GD   GK+ L+       +      T  + Y   + VD +T+ V + + AG  D
Sbjct: 6   LRLGVLGDARSGKSSLIHRFLTGSYQ-VLEKTESEQYKKEMLVDGQTHLVLIREEAGAPD 64

Query: 84  YERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCP---KVPIILVGTKADLR 140
                       D  +  FS+   +S++ +                 + + LVGT+  + 
Sbjct: 65  A-----KFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRIS 119

Query: 141 SENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQ 200
           + +  +             ++ + +   +K   Y E  A     +D+VF    +  V  +
Sbjct: 120 ASSPRVV----------GDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKVVTLR 169

Query: 201 DKS 203
            + 
Sbjct: 170 KQQ 172

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.6 bits (192), Expect = 4e-19
 Identities = 54/178 (30%), Positives = 83/178 (46%), Gaps = 14/178 (7%)

Query: 22  KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
           K+ K+  +G   VGK+ L I   E +F   Y PT+ + +   ITV+ + Y + L DTAGQ
Sbjct: 3   KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQ 62

Query: 82  EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHH-CPKVPIILVGTKADLR 140
           ++Y         + + ++L +S+ S  S+E I       L      ++PI+LVG K DL 
Sbjct: 63  DEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLH 122

Query: 141 SENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVK 198
            E     +            +GK +     AA +LE SAK N+    VF   +  A K
Sbjct: 123 MERVISYE------------EGKALAESWNAA-FLESSAKENQTAVDVFRRIILEAEK 167

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score = 77.8 bits (190), Expect = 6e-19
 Identities = 27/166 (16%), Positives = 47/166 (28%), Gaps = 13/166 (7%)

Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQED 83
           +++  VG    GKT +L      +  T      F+      TV+ K    T+WD  GQ+ 
Sbjct: 1   MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE----TVEYKNISFTVWDVGGQDK 56

Query: 84  YERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSEN 143
              L    + NT   +                +    L     +  ++LV          
Sbjct: 57  IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA 116

Query: 144 KTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVF 189
               +        ++   G    R           A   +GL +  
Sbjct: 117 MNAAE--------ITDKLGLHSLRHRN-WYIQATCATSGDGLYEGL 153

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.4 bits (189), Expect = 1e-18
 Identities = 46/178 (25%), Positives = 77/178 (43%), Gaps = 14/178 (7%)

Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQED 83
           +K+   G   VGK+ L++     +F  +Y PT+   Y    T+D++   + + DTAGQED
Sbjct: 3   VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED 62

Query: 84  YERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSEN 143
             +            L+       S  E +  K   +       V +ILVG KADL    
Sbjct: 63  TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSR 122

Query: 144 KTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEG-LDQVFIAAVRSAVKKQ 200
           +             ST +G+K+  ++  A + ECSA   EG + ++F    R   +++
Sbjct: 123 QV------------STEEGEKLATELACA-FYECSACTGEGNITEIFYELCREVRRRR 167

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score = 75.8 bits (185), Expect = 6e-18
 Identities = 27/180 (15%), Positives = 55/180 (30%), Gaps = 15/180 (8%)

Query: 22  KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
           K L++  +G    GKT +L      +  T      F+      T+  K   + +WD  GQ
Sbjct: 16  KELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVE----TLSYKNLKLNVWDLGGQ 71

Query: 82  EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHH-CPKVPIILVGTKADLR 140
                     Y +T   +                + +  L+        +++   K D  
Sbjct: 72  TSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQP 131

Query: 141 SENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQ 200
                 +  K   +  +          K ++   +  SA   EG+ +     +    ++Q
Sbjct: 132 GALSASEVSKELNLVEL----------KDRSWSIVASSAIKGEGITEGLDWLIDVIKEEQ 181

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 75.1 bits (183), Expect = 1e-17
 Identities = 28/171 (16%), Positives = 55/171 (32%), Gaps = 7/171 (4%)

Query: 22  KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
           K  K+  +G    GKT LL    +++            +P +  +       T +D  G 
Sbjct: 12  KTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPT----LHPTSEELTIAGMTFTTFDLGGH 67

Query: 82  EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLR 140
               R+     P  +  +                +    +       VPI+++G K D  
Sbjct: 68  IQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRP 127

Query: 141 SENKTIDKKKAAEVDLVSTSQGKKMRRKIKAA--EYLECSAKLNEGLDQVF 189
                   ++   +   +T +G    +++ A   E   CS    +G  + F
Sbjct: 128 EAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGF 178

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score = 73.1 bits (178), Expect = 4e-17
 Identities = 27/169 (15%), Positives = 47/169 (27%), Gaps = 15/169 (8%)

Query: 22  KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
           K +++  +G    GKT +L      +  T      F+      TV  K     +WD  GQ
Sbjct: 11  KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVE----TVTYKNVKFNVWDVGGQ 66

Query: 82  EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHH-CPKVPIILVGTKADLR 140
           +    L    Y  T   +           +    + +  +         I++   K    
Sbjct: 67  DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANK---- 122

Query: 141 SENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVF 189
                 D   A +   +    G    R           A   +GL +  
Sbjct: 123 -----QDLPDAMKPHEIQEKLGLTRIRDRN-WYVQPSCATSGDGLYEGL 165

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score = 72.7 bits (177), Expect = 8e-17
 Identities = 26/173 (15%), Positives = 56/173 (32%), Gaps = 15/173 (8%)

Query: 18  KSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWD 77
            +  + +++  +G    GKT LL                     +  +V ++ + + +WD
Sbjct: 11  SAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQ----GFNIKSVQSQGFKLNVWD 66

Query: 78  TAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHH-CPKVPIILVGTK 136
             GQ          + NTD  +          +E    +    L+      VP+++   K
Sbjct: 67  IGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANK 126

Query: 137 ADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVF 189
            DL +     +  +   +  +          + +  +   CSA   EG+    
Sbjct: 127 QDLLTAAPASEIAEGLNLHTI----------RDRVWQIQSCSALTGEGVQDGM 169

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 71.3 bits (173), Expect = 2e-16
 Identities = 27/174 (15%), Positives = 58/174 (33%), Gaps = 14/174 (8%)

Query: 22  KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
           + +++T VG    GKT  +      +F  D +PTV  N      +      + LWD  GQ
Sbjct: 1   EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK---ITKGNVTIKLWDIGGQ 57

Query: 82  EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPK-VPIILVGTKADLR 140
             +  +           +           E   ++ +  L     + +P++++G K DL 
Sbjct: 58  PRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLP 117

Query: 141 SENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVR 194
                 +  +   +  +          + +       S K  + +D      ++
Sbjct: 118 GALDEKELIEKMNLSAI----------QDREICCYSISCKEKDNIDITLQWLIQ 161

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score = 71.2 bits (173), Expect = 3e-16
 Identities = 30/169 (17%), Positives = 51/169 (30%), Gaps = 15/169 (8%)

Query: 22  KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
           +  KV  VG    GKT +L   + N+          +       +        +WD  GQ
Sbjct: 14  QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVE----EIVINNTRFLMWDIGGQ 69

Query: 82  EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCP-KVPIILVGTKADLR 140
           E         Y NT+  ++               + Y  L H    K  +++   K D++
Sbjct: 70  ESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVK 129

Query: 141 SENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVF 189
                 +  +  ++  +          K        C A   EGL Q  
Sbjct: 130 ECMTVAEISQFLKLTSI----------KDHQWHIQACCALTGEGLCQGL 168

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 69.0 bits (167), Expect = 1e-15
 Identities = 30/166 (18%), Positives = 55/166 (33%), Gaps = 8/166 (4%)

Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
           K+  +G    GKT LL     ++  T   PT          +       T +D  G    
Sbjct: 2   KLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWHPTS---EELAIGNIKFTTFDLGGHIQA 57

Query: 85  ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKH-HCPKVPIILVGTKADLRSEN 143
            RL    +P  +  +          ++    +            VP +++G K D  +  
Sbjct: 58  RRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAV 117

Query: 144 KTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVF 189
              + + A  +   + SQ  + +R +   E   CS  +  G  + F
Sbjct: 118 SEAELRSALGLLNTTGSQRIEGQRPV---EVFMCSVVMRNGYLEAF 160

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.9 bits (164), Expect = 5e-15
 Identities = 32/181 (17%), Positives = 62/181 (34%), Gaps = 17/181 (9%)

Query: 25  KVTTVGDGMVGKTCLL--ITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQE 82
           +V  +G+  VGK+ L        +   +D      D Y  T+ VD ++  + L D    +
Sbjct: 5   RVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENK 64

Query: 83  DYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPE--LKHHCPKVPIILVGTKADLR 140
                            L     +  +     S+   +         +PIILVG K+DL 
Sbjct: 65  GENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLV 124

Query: 141 SENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQ 200
              +              +    +    +   +++E SA +   + ++F   VR    ++
Sbjct: 125 RCREV-------------SVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLRR 171

Query: 201 D 201
           D
Sbjct: 172 D 172

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score = 67.0 bits (162), Expect = 9e-15
 Identities = 28/179 (15%), Positives = 57/179 (31%), Gaps = 15/179 (8%)

Query: 22  KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
           + L++  +G    GKT +L         T   PT+  N     T++++ + + +WD  GQ
Sbjct: 1   RELRLLMLGLDNAGKTTILKKFNGEDVDT-ISPTLGFNI---KTLEHRGFKLNIWDVGGQ 56

Query: 82  EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKH-HCPKVPIILVGTKADLR 140
           +         + +TD  +           ++   +    L         +++   K DL 
Sbjct: 57  KSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLP 116

Query: 141 SENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKK 199
                   ++A E+             +        CSA   E L       +     +
Sbjct: 117 GALSCNAIQEALEL----------DSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR 165

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score = 64.3 bits (155), Expect = 8e-14
 Identities = 30/180 (16%), Positives = 58/180 (32%), Gaps = 15/180 (8%)

Query: 22  KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
           + +++  +G    GKT +L      +  T    T+     +  TV  K     +WD  G 
Sbjct: 4   REMRILILGLDGAGKTTILYRLQVGEVVT----TIPTIGFNVETVTYKNLKFQVWDLGGL 59

Query: 82  EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHH-CPKVPIILVGTKADLR 140
                     Y NTD  +               S+    L+     K  +++   K D+ 
Sbjct: 60  TSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDME 119

Query: 141 SENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQ 200
               + +   +  +  +          K +  +  + SA    GLD+     V +   +Q
Sbjct: 120 QAMTSSEMANSLGLPAL----------KDRKWQIFKTSATKGTGLDEAMEWLVETLKSRQ 169

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.0 bits (154), Expect = 1e-13
 Identities = 37/179 (20%), Positives = 64/179 (35%), Gaps = 15/179 (8%)

Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
           KV  +G   VGK+ L       +            Y  +I VD +   + ++D   Q+  
Sbjct: 3   KVLLLGAPGVGKSALARIFGGVED-GPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGG 61

Query: 85  ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPK-VPIILVGTKADLRSEN 143
             L        D +++ +S+    S+E          +      VPIILVG K+DL    
Sbjct: 62  RWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSR 121

Query: 144 KTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQDK 202
           +                +G+          ++E SA L+  +  +F   VR    ++D 
Sbjct: 122 EVS------------VDEGRACAVVFDCK-FIETSAALHHNVQALFEGVVRQIRLRRDS 167

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 61.9 bits (149), Expect = 1e-12
 Identities = 22/203 (10%), Positives = 48/203 (23%), Gaps = 33/203 (16%)

Query: 22  KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
           + +K+  +G G  GK+ ++            +               K     ++D  GQ
Sbjct: 1   REVKLLLLGAGESGKSTIVKQMKIIHEAGTGIV--------ETHFTFKDLHFKMFDVGGQ 52

Query: 82  EDYERLRPMSYPNTDCFLLCFSIGSTSSYENI----------LSKWYPELKHHCPKVPII 131
               +     +      + C ++                   +  +     +       I
Sbjct: 53  RSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSI 112

Query: 132 LVGTKADLRSENKTIDKKKA--------------AEVDLVSTSQGKKMRRKIKAAEYLEC 177
           ++        E K                     A   +    +    R+  K       
Sbjct: 113 ILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFT 172

Query: 178 SAKLNEGLDQVFIAAVRSAVKKQ 200
            A   + +  VF  AV   + K 
Sbjct: 173 CATDTKNVQFVF-DAVTDVIIKN 194

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.8 bits (141), Expect = 1e-11
 Identities = 29/203 (14%), Positives = 56/203 (27%), Gaps = 30/203 (14%)

Query: 22  KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
           + LK+  +G G  GK+  +            VPT           D ++    + D  GQ
Sbjct: 1   RELKLLLLGTGESGKSTFIKQMRIIHG--SGVPTTG---IIEYPFDLQSVIFRMVDVGGQ 55

Query: 82  EDYERLRPMSYPNTDCFLLCFSIGSTSSYENI----------LSKWYPELKHHC-PKVPI 130
               R     + N    +   ++                    + +   + +       +
Sbjct: 56  RSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSV 115

Query: 131 ILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYL-------------EC 177
           IL   K DL  E            +     +  +  R+     ++               
Sbjct: 116 ILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFT 175

Query: 178 SAKLNEGLDQVFIAAVRSAVKKQ 200
            A   E +  VF AAV+  + + 
Sbjct: 176 CATDTENIRFVF-AAVKDTILQL 197

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.3 bits (124), Expect = 3e-09
 Identities = 28/195 (14%), Positives = 57/195 (29%), Gaps = 30/195 (15%)

Query: 25  KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY 84
            V  VG    GKT L +     ++  D   ++ D+       +N+   +TL D  G E  
Sbjct: 2   AVLFVGLCDSGKTLLFVRLLTGQY-RDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESL 60

Query: 85  ERLRPMSY-PNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKV----PIILVGTKADL 139
                  +  +    +      +       ++++  ++      +     +++   K D+
Sbjct: 61  RFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDI 120

Query: 140 RSENKTIDKKKAAEVDL---VSTSQGKKMRRKIKA---------------------AEYL 175
                    ++  E +L     T           +                      E+L
Sbjct: 121 AMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFL 180

Query: 176 ECSAKLNEGLDQVFI 190
           ECSAK   G      
Sbjct: 181 ECSAKGGRGDTGSAD 195

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.2 bits (111), Expect = 2e-07
 Identities = 30/202 (14%), Positives = 53/202 (26%), Gaps = 32/202 (15%)

Query: 24  LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQED 83
           +K+  +G G  GK+  L      +      PT   +       + K     + D  GQ  
Sbjct: 3   VKILLLGAGESGKSTFLKQM---RIIHGQDPTKGIH---EYDFEIKNVPFKMVDVGGQRS 56

Query: 84  YERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC-----------PKVPIIL 132
             +     + +    L   S            +     +                V IIL
Sbjct: 57  ERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIIL 116

Query: 133 VGTKADLRSENKTIDKKKAAEVDLVSTSQG---------KKMRRKIKAAEYLEC-----S 178
              K DL  E   +   K   ++                +  R K +  +         +
Sbjct: 117 FLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTT 176

Query: 179 AKLNEGLDQVFIAAVRSAVKKQ 200
           A   E +  VF   V+  +   
Sbjct: 177 AINTENIRLVF-RDVKDTILHD 197

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.7 bits (110), Expect = 4e-07
 Identities = 21/132 (15%), Positives = 39/132 (29%), Gaps = 18/132 (13%)

Query: 22  KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
              ++  +G G  GK+ ++            V T                +  ++D  GQ
Sbjct: 5   ATHRLLLLGAGESGKSTIVKQMRILHV----VLTS---GIFETKFQVDKVNFHMFDVGGQ 57

Query: 82  EDYERLRPMSYPNTDCFLLCFSIGSTSSY------ENILSKWYPELKHHC-----PKVPI 130
            D  R     + +    +   +  S +         N L +     K          + +
Sbjct: 58  RDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISV 117

Query: 131 ILVGTKADLRSE 142
           IL   K DL +E
Sbjct: 118 ILFLNKQDLLAE 129

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Length = 161

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

 Score = 40.5 bits (93), Expect = 3e-05
 Identities = 31/157 (19%), Positives = 53/157 (33%), Gaps = 10/157 (6%)

Query: 24  LKVTTVGDGMVGKTCLL--ITHTENKFPTDYVPTVFDN-----YPDTITVDNKTYDVTLW 76
           +KV   G    GK+ LL  +   E    TD   T  D      + D + +          
Sbjct: 2   MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRE 61

Query: 77  DTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTK 136
            +   E     R          +L    G+T+   +    W   +     K+PI +V  K
Sbjct: 62  ASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNK 121

Query: 137 ADLRSENKTIDKKKAAEVDLVSTSQGK---KMRRKIK 170
           AD+  E   + +     +  +S   G+    +R  +K
Sbjct: 122 ADITGETLGMSEVNGHALIRLSARTGEGVDVLRNHLK 158

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.8 bits (94), Expect = 4e-05
 Identities = 24/168 (14%), Positives = 51/168 (30%), Gaps = 9/168 (5%)

Query: 26  VTTVGDGMVGKTCLLITHTENKF----PTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQ 81
           +   G    GKT LL   T +       +    +  D     +T+ +    V L      
Sbjct: 6   IIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADYDGSGVTLVDFPGHVKLRYKLSD 65

Query: 82  EDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRS 141
               R + +                T++ E ++             + I++   K++L +
Sbjct: 66  YLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFT 125

Query: 142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVF 189
                  K A E ++      K + R+ K+   +E      +  +   
Sbjct: 126 ARPPSKIKDALESEI-----QKVIERRKKSLNEVERKINEEDYAENTL 168

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.8 bits (92), Expect = 1e-04
 Identities = 27/171 (15%), Positives = 47/171 (27%), Gaps = 20/171 (11%)

Query: 13  KDVKSKSVHKALKVTTVGDGMVGKTCLL-----ITHTENKF-PTDYVPTVFDNYPDTITV 66
            D   +     L V   G+   GK+  +     I + E     T  V    + +P     
Sbjct: 46  SDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPN 105

Query: 67  DNKTYDVTLWDTAGQEDY-----ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPEL 121
                 V  WD  G           L  M +   D F++  +     +  +I       +
Sbjct: 106 IPN---VVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAK----AI 158

Query: 122 KHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAA 172
                K     V TK D    N+   + +  + + V            +  
Sbjct: 159 SMM--KKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFREN 207

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 37.4 bits (85), Expect = 5e-04
 Identities = 33/172 (19%), Positives = 59/172 (34%), Gaps = 4/172 (2%)

Query: 20  VHKALKVTTVGDGMVGKTCLL--ITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWD 77
           +  A+KV  VG   VGK+ L   I + E    +    T  D   D + +D + Y     D
Sbjct: 5   ITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVF--VD 62

Query: 78  TAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKA 137
           TAG     R+ P +      + +  SI        +L       +       ++    +A
Sbjct: 63  TAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRA 122

Query: 138 DLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVF 189
            +   NK        +     T   ++    I  +  +  SA     +D++ 
Sbjct: 123 SVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMI 174

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 36.6 bits (83), Expect = 8e-04
 Identities = 22/192 (11%), Positives = 51/192 (26%), Gaps = 27/192 (14%)

Query: 26  VTTVGDGMVGKTCLLITHTENKFPTDYVPTV----------FDNYPDTITVDNKTYDVTL 75
           +   G   VGK+ L+   T  K      P V               D             
Sbjct: 3   IIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMMGLPKE 62

Query: 76  WDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENI-----LSKWYPELKHHCPK--V 128
                +++       +  N D  +L     +                  E      +  +
Sbjct: 63  VQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDI 122

Query: 129 PIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQV 188
           P I+   K D     + +    A         +  ++        ++  SAK  + ++++
Sbjct: 123 PTIVAVNKLDKIKNVQEVINFLA---------EKFEVPLSEIDKVFIPISAKFGDNIERL 173

Query: 189 FIAAVRSAVKKQ 200
               +   ++++
Sbjct: 174 -KNRIFEVIRER 184

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	205
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	100.0
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	100.0
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	100.0
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	100.0
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	100.0
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	100.0
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	100.0
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	100.0
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	100.0
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	100.0
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	100.0
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	100.0
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	100.0
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.98
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.97
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.97
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.97
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.96
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.94
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.94
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.94
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.94
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.94
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.93
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.93
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.92
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.92
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.91
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.91
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.9
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.89
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.89
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.88
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.88
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.87
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.86
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.86
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.86
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.84
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.83
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.81
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.79
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.77
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.74
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.73
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.71
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.68
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.67
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	99.64
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	99.63
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.59
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	99.59
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	99.51
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	99.49
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.45
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	99.28
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	99.27
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	99.06
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	98.94
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	98.89
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	98.78
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	98.77
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.51
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.45
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.27
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.21
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	98.05
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.0
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	97.93
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	97.79
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.75
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.72
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.66
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.61
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.57
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.57
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.53
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.52
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.5
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.5
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.49
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.48
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	97.44
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.43
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.33
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.27
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.26
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.25
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.23
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.2
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.14
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.08
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.07
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.07
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.06
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.06
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	97.06
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	97.04
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	97.03
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.03
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.03
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	97.0
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.0
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	96.98
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	96.95
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	96.95
d2awna2	232	Maltose transport protein MalK, N-terminal domain	96.95
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	96.91
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	96.91
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	96.9
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	96.89
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	96.88
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	96.88
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	96.87
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	96.86
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	96.86
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	96.86
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	96.85
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	96.85
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	96.85
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	96.85
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	96.82
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	96.81
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	96.8
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	96.78
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	96.78
d1g2912	240	Maltose transport protein MalK, N-terminal domain	96.77
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	96.75
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	96.75
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	96.75
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	96.74
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	96.72
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	96.69
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	96.64
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	96.63
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	96.63
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	96.63
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	96.55
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	96.53
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.52
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.47
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.47
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	96.44
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.44
d1vmaa2	213	GTPase domain of the signal recognition particle r	96.41
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	96.38
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	96.37
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	96.29
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	96.28
d1j8yf2	211	GTPase domain of the signal sequence recognition p	96.22
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	96.21
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	96.21
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.2
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	96.18
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	96.17
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	96.08
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	96.07
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	96.05
d2qy9a2	211	GTPase domain of the signal recognition particle r	96.05
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.01
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	96.01
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	96.0
d1okkd2	207	GTPase domain of the signal recognition particle r	96.0
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	95.92
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	95.88
d1ls1a2	207	GTPase domain of the signal sequence recognition p	95.88
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	95.76
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	95.68
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	95.47
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	95.43
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	95.34
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	95.34
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	95.3
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	95.27
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	95.23
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	95.23
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	95.18
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	95.18
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	95.18
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	95.15
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	95.11
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	95.1
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	95.06
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	95.05
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	94.99
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	94.94
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	94.94
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	94.82
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	94.73
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	94.72
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	94.63
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	94.63
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	94.47
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	94.41
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	94.39
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	94.36
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	94.31
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	94.3
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	94.3
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	94.23
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	94.2
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	93.96
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	93.9
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	93.86
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	93.69
d1tuea_	205	Replication protein E1 helicase domain {Human papi	93.67
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	93.51
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	93.43
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	93.24
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	93.07
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	92.5
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	92.49
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	92.49
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	92.49
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	92.06
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	91.74
d1xpua3	289	Transcription termination factor Rho, ATPase domai	91.62
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	91.2
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	90.63
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	90.47
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	90.23
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	90.0
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	89.87
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	89.49
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	89.38
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	87.97
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	87.73
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	87.35
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	86.65
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	86.5
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	85.76
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	85.56
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	85.47
d1xx6a1	141	Thymidine kinase, TK1, N-terminal domain {Clostrid	85.06
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	84.75
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	84.6
d1zpda1	175	Pyruvate decarboxylase {Zymomonas mobilis [TaxId:	84.54
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	84.36
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	84.16
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	83.7
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	82.54
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	82.37
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	81.85
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	80.74

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-40  Score=236.89  Aligned_cols=182  Identities=46%  Similarity=0.828  Sum_probs=164.0

Q ss_pred             ccccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCc
Q psy15714         17 SKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTD   96 (205)
Q Consensus        17 ~~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   96 (205)
                      .......+||+++|.+|+|||||+++|..+.|...+.+|++......+..++..+.+.+||++|++.+...+..+++.+|
T Consensus         3 ~~~~~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~a~   82 (185)
T d2atxa1           3 HGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTD   82 (185)
T ss_dssp             SCCEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCS
T ss_pred             CCCCCcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCceeeeeeEEEeeCCceEEeecccccccchhhhhhhhcccccc
Confidence            33467889999999999999999999999999999999998777778888999999999999999999999999999999


Q ss_pred             EEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEE
Q psy15714         97 CFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLE  176 (205)
Q Consensus        97 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (205)
                      ++++|||+++++||+++...|...++...+++|+++|+||+|+.+.............+.++.++++++++.++..+|+|
T Consensus        83 ~~ilv~d~t~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a~~~~~~~~~E  162 (185)
T d2atxa1          83 VFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVE  162 (185)
T ss_dssp             EEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEE
T ss_pred             eeeeccccchHHHHHHHHHHHHHHHHhcCCCCCeeEeeeccccccchhhhhhhhhcccccccHHHHHHHHHHcCCCEEEE
Confidence            99999999999999998878999998888899999999999998876655555555566889999999999999777999


Q ss_pred             cccCCCCCHHHHHHHHHHHHHh
Q psy15714        177 CSAKLNEGLDQVFIAAVRSAVK  198 (205)
Q Consensus       177 ~Sa~~~~~i~~~~~~i~~~~~~  198 (205)
                      |||++|+||+++|+.+++++++
T Consensus       163 ~SAk~~~gv~e~F~~li~~il~  184 (185)
T d2atxa1         163 CSALTQKGLKTVFDEAIIAILT  184 (185)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHHC
T ss_pred             ecCCCCcCHHHHHHHHHHHHcC
Confidence            9999999999999999998864

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.2e-40  Score=232.54  Aligned_cols=176  Identities=52%  Similarity=0.928  Sum_probs=161.1

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEE
Q psy15714         23 ALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCF  102 (205)
Q Consensus        23 ~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~  102 (205)
                      +.||+|+|++|+|||||+++|..+.+.+.+.+|.+........+++..+.+.+||++|++.|+..+..+++++|++++||
T Consensus         2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~   81 (177)
T d1kmqa_           2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCF   81 (177)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEE
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeeccccccccccceeeeccccCccchhcccchhhcccchhhhhhc
Confidence            47999999999999999999999999999999988777777889999999999999999999999999999999999999


Q ss_pred             ECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCCC
Q psy15714        103 SIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLN  182 (205)
Q Consensus       103 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  182 (205)
                      |+++++||+++...|...+....+++|++||+||+|+...+...........+.++.++++.+++..+..+|+||||++|
T Consensus        82 d~~~~~Sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SAkt~  161 (177)
T d1kmqa_          82 SIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK  161 (177)
T ss_dssp             ETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTC
T ss_pred             ccchhHHHHHHHHHHHHHHHHhCCCCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHHcCCcEEEEecCCCC
Confidence            99999999998878888888888899999999999998877666555555666899999999999999888999999999


Q ss_pred             CCHHHHHHHHHHHHHh
Q psy15714        183 EGLDQVFIAAVRSAVK  198 (205)
Q Consensus       183 ~~i~~~~~~i~~~~~~  198 (205)
                      .||+++|+.+++.+++
T Consensus       162 ~gi~e~F~~i~~~~l~  177 (177)
T d1kmqa_         162 DGVREVFEMATRAALQ  177 (177)
T ss_dssp             TTHHHHHHHHHHHHHC
T ss_pred             cCHHHHHHHHHHHHhC
Confidence            9999999999998763

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-39  Score=233.18  Aligned_cols=178  Identities=52%  Similarity=0.947  Sum_probs=161.3

Q ss_pred             eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEE
Q psy15714         22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLC  101 (205)
Q Consensus        22 ~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v  101 (205)
                      +.+||+++|++|+|||||+++|..+.|...+.+|.+........+++..+.+.+||++|+++|+..+..+++.+|++++|
T Consensus         2 ~~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   81 (191)
T d2ngra_           2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC   81 (191)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             CceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeecceeEeeCCceeeeeccccccchhhhhhhhhcccccceeecc
Confidence            56899999999999999999999999999999999888777888899999999999999999999999999999999999


Q ss_pred             EECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCC
Q psy15714        102 FSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKL  181 (205)
Q Consensus       102 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  181 (205)
                      ||+++++||+++...|...+....+++|+++|+||+|+...............+.++.++++.+++.++..+|++|||++
T Consensus        82 ~d~~~~~Sf~~~~~~~~~~~~~~~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~  161 (191)
T d2ngra_          82 FSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALT  161 (191)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSCEEECCTTT
T ss_pred             cccchHHHHHHHHHHHHHHHhhcCCCCceEEEeccccccccchhhhhhhhcccccccHHHHHHHHHHcCCCeEEEEeCCC
Confidence            99999999999987788888888889999999999999877655554444555678999999999998776699999999


Q ss_pred             CCCHHHHHHHHHHHHHhh
Q psy15714        182 NEGLDQVFIAAVRSAVKK  199 (205)
Q Consensus       182 ~~~i~~~~~~i~~~~~~~  199 (205)
                      |+||+++|+.+++.+++.
T Consensus       162 ~~~V~e~f~~l~~~~~~~  179 (191)
T d2ngra_         162 QKGLKNVFDEAILAALEP  179 (191)
T ss_dssp             CTTHHHHHHHHHHHHTSC
T ss_pred             CcCHHHHHHHHHHHHhcC
Confidence            999999999999988875

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-38  Score=227.16  Aligned_cols=178  Identities=54%  Similarity=0.980  Sum_probs=162.9

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEE
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLL  100 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~  100 (205)
                      .+.+||+|+|.+|+|||||+++|..+.|...+.+|.+......+..++..+.+.+||++|++.+...+..+++.+|++++
T Consensus         3 p~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   82 (183)
T d1mh1a_           3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI   82 (183)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHHhCCCCcccccceeeceeeeeeccCcceEEEeecccccccchhhhhhcccccceeee
Confidence            56799999999999999999999999999999999987777788899999999999999999999999999999999999


Q ss_pred             EEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccC
Q psy15714        101 CFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAK  180 (205)
Q Consensus       101 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  180 (205)
                      |||++++++|+++...|...++....++|+++|+||+|+...+...........+.....++..+++.++..+|+||||+
T Consensus        83 v~d~~~~~sf~~i~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~E~SAk  162 (183)
T d1mh1a_          83 CFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL  162 (183)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred             eeccchHHHHHHHHHHHHHHHHHhCCCCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHHHHcCCceEEEcCCC
Confidence            99999999999998778888888888999999999999988876666655666667889999999999998779999999


Q ss_pred             CCCCHHHHHHHHHHHHHh
Q psy15714        181 LNEGLDQVFIAAVRSAVK  198 (205)
Q Consensus       181 ~~~~i~~~~~~i~~~~~~  198 (205)
                      +|+||+++|+.+++.++.
T Consensus       163 ~~~~V~e~F~~l~~~il~  180 (183)
T d1mh1a_         163 TQRGLKTVFDEAIRAVLC  180 (183)
T ss_dssp             TCTTHHHHHHHHHHHHSC
T ss_pred             CCcCHHHHHHHHHHHHcC
Confidence            999999999999998864

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.8e-39  Score=226.03  Aligned_cols=169  Identities=33%  Similarity=0.515  Sum_probs=152.8

Q ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEE
Q psy15714         20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFL   99 (205)
Q Consensus        20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   99 (205)
                      +.+.+||+++|.+|+|||||+++|..+.+...+.++..+.....+.+++..+.+.+||++|++++...+..+++.+++++
T Consensus         3 ~~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~i   82 (173)
T d2fn4a1           3 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFL   82 (173)
T ss_dssp             SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEE
T ss_pred             CCCeEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEeccCCeeeeeeccccccccccccccchhhccceeee
Confidence            45679999999999999999999999999998888887777788889999999999999999999999999999999999


Q ss_pred             EEEECCCcchHHHHHHHHHHHHhhh--CCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEc
Q psy15714        100 LCFSIGSTSSYENILSKWYPELKHH--CPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLEC  177 (205)
Q Consensus       100 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (205)
                      +|||++++.|+..+. .|...+.+.  ..++|+++|+||+|+...+            .+..++++.+++.+++. |++|
T Consensus        83 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~------------~~~~~~~~~~~~~~~~~-~~e~  148 (173)
T d2fn4a1          83 LVFAINDRQSFNEVG-KLFTQILRVKDRDDFPVVLVGNKADLESQR------------QVPRSEASAFGASHHVA-YFEA  148 (173)
T ss_dssp             EEEETTCHHHHHHHH-HHHHHHHHHHTSSCCCEEEEEECGGGGGGC------------CSCHHHHHHHHHHTTCE-EEEC
T ss_pred             eecccccccccchhh-hhhHHHHHHhccCCCceEEEEEeechhhcc------------ccchhhhhHHHHhcCCE-EEEE
Confidence            999999999999987 787776553  2689999999999997765            67888999999999987 9999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHhhccc
Q psy15714        178 SAKLNEGLDQVFIAAVRSAVKKQDK  202 (205)
Q Consensus       178 Sa~~~~~i~~~~~~i~~~~~~~~~~  202 (205)
                      ||++|.||+++|+++++.+.+.+++
T Consensus       149 Sak~g~gv~e~f~~l~~~i~k~~~~  173 (173)
T d2fn4a1         149 SAKLRLNVDEAFEQLVRAVRKYQEQ  173 (173)
T ss_dssp             BTTTTBSHHHHHHHHHHHHHHHTTC
T ss_pred             eCCCCcCHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999998877654

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2e-38  Score=224.97  Aligned_cols=177  Identities=38%  Similarity=0.758  Sum_probs=160.2

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEE
Q psy15714         23 ALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCF  102 (205)
Q Consensus        23 ~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~  102 (205)
                      .+||+++|++|+|||||+++|..++|.+.+.+|.+......+.+++..+.+.+||++|++.+...++.+++.+|++++||
T Consensus         2 ~~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~   81 (179)
T d1m7ba_           2 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICF   81 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeecccccccccceEEeeccccccccccccccccchhhhhhhhheee
Confidence            57999999999999999999999999999999988877778888999999999999999999999999999999999999


Q ss_pred             ECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCCC
Q psy15714        103 SIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLN  182 (205)
Q Consensus       103 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  182 (205)
                      |+++++||+.+...|...+....+++|+++||||+|+...............+.++.+++..++++.+..+|+||||++|
T Consensus        82 d~~~~~Sf~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~y~E~SAk~~  161 (179)
T d1m7ba_          82 DISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQS  161 (179)
T ss_dssp             ETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTTTB
T ss_pred             ecccCCCHHHHHHHHHHHHhccCCcceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHHHhCCCeEEEEeCCCC
Confidence            99999999999878888888888899999999999998776655544445556799999999999999888999999999


Q ss_pred             C-CHHHHHHHHHHHHHhh
Q psy15714        183 E-GLDQVFIAAVRSAVKK  199 (205)
Q Consensus       183 ~-~i~~~~~~i~~~~~~~  199 (205)
                      + +++++|+.+++.++++
T Consensus       162 ~n~i~~~F~~~~~~~l~k  179 (179)
T d1m7ba_         162 ENSVRDIFHVATLACVNK  179 (179)
T ss_dssp             HHHHHHHHHHHHHHHHTC
T ss_pred             CcCHHHHHHHHHHHHhcC
Confidence            8 5999999999998864

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-38  Score=222.32  Aligned_cols=163  Identities=33%  Similarity=0.489  Sum_probs=149.3

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEE
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLL  100 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~  100 (205)
                      .+.+||+++|++|+|||||+++|.++.+.+.+.+|.+..+...+.+++..+.+.+||++|.+.+..++..++..+|++++
T Consensus         2 ~k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~il   81 (167)
T d1xtqa1           2 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYIL   81 (167)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEEE
T ss_pred             CcceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceecccceEEecCcEEEEeeecccccccccccccchhhhhhhhhhh
Confidence            46689999999999999999999999999989999988888888999999999999999999999999999999999999


Q ss_pred             EEECCCcchHHHHHHHHHHHHhhh-C-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcc
Q psy15714        101 CFSIGSTSSYENILSKWYPELKHH-C-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECS  178 (205)
Q Consensus       101 v~d~~~~~s~~~~~~~~~~~~~~~-~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  178 (205)
                      |||+++++++..+. .|+..+... . .++|+++|+||+|+...+            .++.++++.+++++++. |++||
T Consensus        82 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilvgnK~Dl~~~r------------~v~~~~~~~~a~~~~~~-~~e~S  147 (167)
T d1xtqa1          82 VYSVTSIKSFEVIK-VIHGKLLDMVGKVQIPIMLVGNKKDLHMER------------VISYEEGKALAESWNAA-FLESS  147 (167)
T ss_dssp             EEETTCHHHHHHHH-HHHHHHHHHHCSSCCCEEEEEECTTCGGGC------------CSCHHHHHHHHHHHTCE-EEECC
T ss_pred             hcccchhhhhhhhh-hhhhhhhhcccccccceeeecccccccccc------------chhHHHHHHHHHHcCCE-EEEEe
Confidence            99999999999987 787776554 3 689999999999997765            78899999999999987 99999


Q ss_pred             cCCCCCHHHHHHHHHHHHH
Q psy15714        179 AKLNEGLDQVFIAAVRSAV  197 (205)
Q Consensus       179 a~~~~~i~~~~~~i~~~~~  197 (205)
                      |++|+||+++|+.|++.+.
T Consensus       148 ak~~~~v~~~f~~li~~~~  166 (167)
T d1xtqa1         148 AKENQTAVDVFRRIILEAE  166 (167)
T ss_dssp             TTCHHHHHHHHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHhc
Confidence            9999999999999998875

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-38  Score=222.45  Aligned_cols=164  Identities=24%  Similarity=0.337  Sum_probs=134.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEEE
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFS  103 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d  103 (205)
                      +||+++|++|+|||||+++|.+..+.. ..++.+..+...+.+++..+.+.+||++|++.++.++..+++.+|++++|||
T Consensus         2 fKi~lvG~~~vGKTsLi~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv~d   80 (168)
T d2gjsa1           2 YKVLLLGAPGVGKSALARIFGGVEDGP-EAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYS   80 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC----------CEEEEEEEEETTEEEEEEEEECC-------CHHHHHTSCSEEEEEEE
T ss_pred             eEEEEECCCCcCHHHHHHHHhCCccCC-cCCeeeeeecceeeccccccceeeeecccccccceecccchhhhhhhceecc
Confidence            799999999999999999999887644 4556666667788899999999999999999999999999999999999999


Q ss_pred             CCCcchHHHHHHHHHHHHhhhC--CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCC
Q psy15714        104 IGSTSSYENILSKWYPELKHHC--PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKL  181 (205)
Q Consensus       104 ~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  181 (205)
                      ++++.+++++. .|+..+....  .++|+++|+||+|+...+            .++.++++.+++.+++. |++|||++
T Consensus        81 ~t~~~s~~~~~-~~~~~i~~~~~~~~~piilvgnK~Dl~~~~------------~v~~~~~~~~~~~~~~~-~~e~Sak~  146 (168)
T d2gjsa1          81 VTDKGSFEKAS-ELRVQLRRARQTDDVPIILVGNKSDLVRSR------------EVSVDEGRACAVVFDCK-FIETSAAL  146 (168)
T ss_dssp             TTCHHHHHHHH-HHHHHHHHHCC--CCCEEEEEECTTCGGGC------------CSCHHHHHHHHHHHTSE-EEECBTTT
T ss_pred             ccccccccccc-cccchhhcccccccceEEEeecccchhhhc------------chhHHHHHHHHHhcCCE-EEEEeCCC
Confidence            99999999997 7888887655  578999999999998764            78899999999999987 99999999


Q ss_pred             CCCHHHHHHHHHHHHHhhccc
Q psy15714        182 NEGLDQVFIAAVRSAVKKQDK  202 (205)
Q Consensus       182 ~~~i~~~~~~i~~~~~~~~~~  202 (205)
                      |+|++++|+++++.+..++++
T Consensus       147 ~~~v~~~f~~l~~~i~~~~~~  167 (168)
T d2gjsa1         147 HHNVQALFEGVVRQIRLRRDS  167 (168)
T ss_dssp             TBSHHHHHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHHHHhhC
Confidence            999999999999998776553

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.9e-38  Score=221.22  Aligned_cols=162  Identities=25%  Similarity=0.493  Sum_probs=149.5

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEE
Q psy15714         23 ALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLC  101 (205)
Q Consensus        23 ~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v  101 (205)
                      .+||+++|++|+|||||+++|..+.+...+.+|.+... ......++..+.+.+||++|++.+..++..+++.++++++|
T Consensus         2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v   81 (164)
T d1z2aa1           2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLV   81 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchhhhhhhhhccCceEEEE
Confidence            58999999999999999999999999999999987665 56788899999999999999999999999999999999999


Q ss_pred             EECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCC
Q psy15714        102 FSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKL  181 (205)
Q Consensus       102 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  181 (205)
                      ||++++.+++++. .|+..+.+..+++|+++|+||+|+...+            .++.++++.+++.+++. ++++||++
T Consensus        82 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~iilVgnK~Dl~~~~------------~v~~~~~~~~~~~~~~~-~~e~Sak~  147 (164)
T d1z2aa1          82 FSTTDRESFEAIS-SWREKVVAEVGDIPTALVQNKIDLLDDS------------CIKNEEAEGLAKRLKLR-FYRTSVKE  147 (164)
T ss_dssp             EETTCHHHHHTHH-HHHHHHHHHHCSCCEEEEEECGGGGGGC------------SSCHHHHHHHHHHHTCE-EEECBTTT
T ss_pred             Eeccchhhhhhcc-cccccccccCCCceEEEeeccCCcccce------------eeeehhhHHHHHHcCCE-EEEeccCC
Confidence            9999999999987 8999998887899999999999998765            78889999999999985 99999999


Q ss_pred             CCCHHHHHHHHHHHHHh
Q psy15714        182 NEGLDQVFIAAVRSAVK  198 (205)
Q Consensus       182 ~~~i~~~~~~i~~~~~~  198 (205)
                      |.|++++|++|++.+++
T Consensus       148 g~~v~e~f~~l~~~~lq  164 (164)
T d1z2aa1         148 DLNVSEVFKYLAEKHLQ  164 (164)
T ss_dssp             TBSSHHHHHHHHHHHHC
T ss_pred             CcCHHHHHHHHHHHHhC
Confidence            99999999999998763

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-37  Score=218.46  Aligned_cols=167  Identities=26%  Similarity=0.494  Sum_probs=149.3

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEE
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFL   99 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   99 (205)
                      ...+||+++|++|+|||||+++|..+.+...+.++....+ ...+.+++..+.+.+||+||++.|..+++.+++++++++
T Consensus         3 ~~~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~i   82 (171)
T d2ew1a1           3 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALI   82 (171)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEE
T ss_pred             CEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhccceEE
Confidence            4569999999999999999999999999888888876665 567888999999999999999999999999999999999


Q ss_pred             EEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcc
Q psy15714        100 LCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECS  178 (205)
Q Consensus       100 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  178 (205)
                      +|||++++.++..+. .|...+.+.. ..+|+++|+||+|+....            .++.++++.+++..++. +++||
T Consensus        83 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~ilvgnK~D~~~~~------------~v~~~~~~~~~~~~~~~-~~~~S  148 (171)
T d2ew1a1          83 LTYDITCEESFRCLP-EWLREIEQYASNKVITVLVGNKIDLAERR------------EVSQQRAEEFSEAQDMY-YLETS  148 (171)
T ss_dssp             EEEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECGGGGGGC------------SSCHHHHHHHHHHHTCC-EEECC
T ss_pred             Eeeecccchhhhhhh-hhhhhhcccccccccEEEEEeeccccccc------------chhhhHHHHHHHhCCCE-EEEEc
Confidence            999999999999988 5666665554 679999999999987654            78889999999999987 99999


Q ss_pred             cCCCCCHHHHHHHHHHHHHhhcc
Q psy15714        179 AKLNEGLDQVFIAAVRSAVKKQD  201 (205)
Q Consensus       179 a~~~~~i~~~~~~i~~~~~~~~~  201 (205)
                      |++|+||+++|.++++.++.+.+
T Consensus       149 Aktg~gV~e~f~~l~~~l~~~~r  171 (171)
T d2ew1a1         149 AKESDNVEKLFLDLACRLISEAR  171 (171)
T ss_dssp             TTTCTTHHHHHHHHHHHHHHHHC
T ss_pred             cCCCCCHHHHHHHHHHHHHHhcC
Confidence            99999999999999999887653

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=100.00  E-value=4.3e-38  Score=221.16  Aligned_cols=163  Identities=32%  Similarity=0.512  Sum_probs=146.6

Q ss_pred             eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEE
Q psy15714         22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLC  101 (205)
Q Consensus        22 ~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v  101 (205)
                      ..+||+++|++++|||||+++|..++|...+.+|.+..+...+.+++..+.+.+||++|++.+..++..+++++|++++|
T Consensus         3 ~~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv   82 (168)
T d1u8za_           3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV   82 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCcccCCccccccccccccccccccccccccccccchhhhhhhcccccceeEEE
Confidence            35799999999999999999999999999999999888877888999999999999999999999888999999999999


Q ss_pred             EECCCcchHHHHHHHHHHHHhhhC--CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEccc
Q psy15714        102 FSIGSTSSYENILSKWYPELKHHC--PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSA  179 (205)
Q Consensus       102 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  179 (205)
                      ||++++.+++.+. .|+..+.+..  +++|+++|+||+|+...+            .++.++++.+++.+++. +++|||
T Consensus        83 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piiivgnK~Dl~~~~------------~v~~~~~~~~~~~~~~~-~~e~Sa  148 (168)
T d1u8za_          83 FSITEMESFAATA-DFREQILRVKEDENVPFLLVGNKSDLEDKR------------QVSVEEAKNRADQWNVN-YVETSA  148 (168)
T ss_dssp             EETTCHHHHHHHH-HHHHHHHHHHCCTTSCEEEEEECGGGGGGC------------CSCHHHHHHHHHHHTCE-EEECCT
T ss_pred             eeccchhhhhhHH-HHHHHHHHhhCCCCCcEEEEeccccccccc------------cccHHHHHHHHHHcCCe-EEEEcC
Confidence            9999999999987 7988877653  689999999999997654            78899999999999987 999999


Q ss_pred             CCCCCHHHHHHHHHHHHHh
Q psy15714        180 KLNEGLDQVFIAAVRSAVK  198 (205)
Q Consensus       180 ~~~~~i~~~~~~i~~~~~~  198 (205)
                      ++|+|++++|.++++.+..
T Consensus       149 k~g~gv~e~f~~l~~~i~~  167 (168)
T d1u8za_         149 KTRANVDKVFFDLMREIRA  167 (168)
T ss_dssp             TTCTTHHHHHHHHHHHHHT
T ss_pred             CCCcCHHHHHHHHHHHHHC
Confidence            9999999999999998754

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-37  Score=218.87  Aligned_cols=163  Identities=28%  Similarity=0.561  Sum_probs=141.4

Q ss_pred             eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEE
Q psy15714         22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLL  100 (205)
Q Consensus        22 ~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~  100 (205)
                      ..+||+++|++|+|||||+++|..+.+.+.+.+|.+... ......++..+.+.+||++|++.++.++..+++++|++++
T Consensus         2 y~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   81 (167)
T d1z08a1           2 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAIL   81 (167)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEE
T ss_pred             ceEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccCCccceeeeeccCCcceecccchhhccCCceeEE
Confidence            468999999999999999999999999999999887766 4577788889999999999999999999999999999999


Q ss_pred             EEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEccc
Q psy15714        101 CFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSA  179 (205)
Q Consensus       101 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  179 (205)
                      |||+++++||+.+. .|+..+.... ...|+++++||+|+...+            .++.++++.+++.+++. +++|||
T Consensus        82 v~d~~~~~Sf~~~~-~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~------------~v~~~e~~~~a~~~~~~-~~e~Sa  147 (167)
T d1z08a1          82 VYDITDEDSFQKVK-NWVKELRKMLGNEICLCIVGNKIDLEKER------------HVSIQEAESYAESVGAK-HYHTSA  147 (167)
T ss_dssp             EEETTCHHHHHHHH-HHHHHHHHHHGGGSEEEEEEECGGGGGGC------------CSCHHHHHHHHHHTTCE-EEEEBT
T ss_pred             EEeCCchhHHHhhh-hhhhhcccccccccceeeecccccccccc------------ccchHHHHHHHHHcCCe-EEEEec
Confidence            99999999999998 6776665544 688999999999998765            78999999999999986 999999


Q ss_pred             CCCCCHHHHHHHHHHHHHh
Q psy15714        180 KLNEGLDQVFIAAVRSAVK  198 (205)
Q Consensus       180 ~~~~~i~~~~~~i~~~~~~  198 (205)
                      ++|.||+++|.+|++.+++
T Consensus       148 k~~~~v~e~F~~l~~~i~~  166 (167)
T d1z08a1         148 KQNKGIEELFLDLCKRMIE  166 (167)
T ss_dssp             TTTBSHHHHHHHHHHHHHC
T ss_pred             CCCcCHHHHHHHHHHHHhh
Confidence            9999999999999998864

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1e-37  Score=219.48  Aligned_cols=164  Identities=33%  Similarity=0.490  Sum_probs=149.8

Q ss_pred             eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEE
Q psy15714         22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLC  101 (205)
Q Consensus        22 ~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v  101 (205)
                      ..+||+++|++++|||||++++.++.+.+.+.++.+..+.+.+.+++..+.+.+||++|++.+...++.+++.+|++++|
T Consensus         3 pt~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~llv   82 (169)
T d1x1ra1           3 PTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIV   82 (169)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEE
T ss_pred             CcEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeeccccccccccccccccccccccccccccchhhhhhhccEEEEe
Confidence            46899999999999999999999999999999998888777888999999999999999999999999999999999999


Q ss_pred             EECCCcchHHHHHHHHHHHHhhhC--CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEccc
Q psy15714        102 FSIGSTSSYENILSKWYPELKHHC--PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSA  179 (205)
Q Consensus       102 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  179 (205)
                      ||++++.|+.++. .|+..+.+..  .++|+++++||+|+...+            .++.++++++++.+++. |+++||
T Consensus        83 ~d~~d~~Sf~~~~-~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~------------~v~~e~~~~~~~~~~~~-~~e~Sa  148 (169)
T d1x1ra1          83 YSVTDKASFEHVD-RFHQLILRVKDRESFPMILVANKVDLMHLR------------KVTRDQGKEMATKYNIP-YIETSA  148 (169)
T ss_dssp             EETTCHHHHHTHH-HHHHHHHHHHTSSCCCEEEEEECTTCSTTC------------CSCHHHHHHHHHHHTCC-EEEEBC
T ss_pred             cccccchhhhccc-hhhHHHHhhccccCccEEEEecccchhhhc------------eeehhhHHHHHHHcCCE-EEEEcC
Confidence            9999999999987 7888776553  589999999999998765            78899999999999986 999999


Q ss_pred             CCCC-CHHHHHHHHHHHHHhh
Q psy15714        180 KLNE-GLDQVFIAAVRSAVKK  199 (205)
Q Consensus       180 ~~~~-~i~~~~~~i~~~~~~~  199 (205)
                      +++. ||+++|..+++.+.++
T Consensus       149 k~~~~nV~~~F~~l~~~i~~~  169 (169)
T d1x1ra1         149 KDPPLNVDKTFHDLVRVIRQQ  169 (169)
T ss_dssp             SSSCBSHHHHHHHHHHHHHHC
T ss_pred             CCCCcCHHHHHHHHHHHHHhC
Confidence            9885 9999999999988753

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.3e-38  Score=220.54  Aligned_cols=164  Identities=30%  Similarity=0.515  Sum_probs=148.5

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEE
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLL  100 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~  100 (205)
                      ++.+||+++|++|+|||||+++|..++|...+.++.+..+...+.+++..+.+.+||++|++.+...+..+++++|++++
T Consensus         1 mr~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   80 (167)
T d1c1ya_           1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL   80 (167)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccccceeEEeeeeEEEeccccccCcccccccccccccccceeEE
Confidence            46799999999999999999999999999999999988887788889999999999999999999999999999999999


Q ss_pred             EEECCCcchHHHHHHHHHHHHhhh-C-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcc
Q psy15714        101 CFSIGSTSSYENILSKWYPELKHH-C-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECS  178 (205)
Q Consensus       101 v~d~~~~~s~~~~~~~~~~~~~~~-~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  178 (205)
                      |||++++.|++++. .|+..+.+. . +++|+++|+||+|+....            ..+.+++..+++.....++++||
T Consensus        81 v~d~~~~~sf~~~~-~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~------------~~~~~~~~~~~~~~~~~~~~e~S  147 (167)
T d1c1ya_          81 VYSITAQSTFNDLQ-DLREQILRVKDTEDVPMILVGNKCDLEDER------------VVGKEQGQNLARQWCNCAFLESS  147 (167)
T ss_dssp             EEETTCHHHHHTHH-HHHHHHHHHHCCSCCCEEEEEECTTCGGGC------------CSCHHHHHHHHHHTTSCEEEECB
T ss_pred             eeeccchhhhHhHH-HHHHHHHHhcCCCCCeEEEEEEecCccccc------------ccchhHHHHHHHHhCCCEEEEEc
Confidence            99999999999998 677766553 3 689999999999998765            77888999999987666699999


Q ss_pred             cCCCCCHHHHHHHHHHHHH
Q psy15714        179 AKLNEGLDQVFIAAVRSAV  197 (205)
Q Consensus       179 a~~~~~i~~~~~~i~~~~~  197 (205)
                      |++|+|++++|+++++.+.
T Consensus       148 ak~g~gv~e~F~~l~~~i~  166 (167)
T d1c1ya_         148 AKSKINVNEIFYDLVRQIN  166 (167)
T ss_dssp             TTTTBSHHHHHHHHHHHHT
T ss_pred             CCCCcCHHHHHHHHHHHhc
Confidence            9999999999999998774

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=3.8e-37  Score=216.53  Aligned_cols=165  Identities=28%  Similarity=0.528  Sum_probs=146.7

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEE
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFL   99 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   99 (205)
                      ...+||+++|++|+|||||++++.++.+.+.+.++.+... ...+...+..+.+.+||+||++.+..+++.+++.+|++|
T Consensus         3 ~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~~i   82 (169)
T d3raba_           3 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFI   82 (169)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCEEE
T ss_pred             CeEEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence            4579999999999999999999999999888888887555 567778889999999999999999999999999999999


Q ss_pred             EEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcc
Q psy15714        100 LCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECS  178 (205)
Q Consensus       100 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  178 (205)
                      +|||+++++++..+. .|...+.... .+.|+++++||.|+...+            .++.++++.+++.+++. +++||
T Consensus        83 lv~d~~~~~s~~~~~-~~~~~~~~~~~~~~~iivv~nK~D~~~~~------------~v~~~~~~~~~~~~~~~-~~e~S  148 (169)
T d3raba_          83 LMYDITNEESFNAVQ-DWSTQIKTYSWDNAQVLLVGNKCDMEDER------------VVSSERGRQLADHLGFE-FFEAS  148 (169)
T ss_dssp             EEEETTCHHHHHTHH-HHHHHHHHHCCSCCEEEEEEECTTCGGGC------------CSCHHHHHHHHHHHTCE-EEECB
T ss_pred             EEEECccchhhhhhh-hhhhhhhcccCCcceEEEEEeeccccccc------------ccchhhhHHHHHHcCCE-EEEec
Confidence            999999999999987 5666565554 789999999999987765            78889999999999986 99999


Q ss_pred             cCCCCCHHHHHHHHHHHHHhh
Q psy15714        179 AKLNEGLDQVFIAAVRSAVKK  199 (205)
Q Consensus       179 a~~~~~i~~~~~~i~~~~~~~  199 (205)
                      |++|.|++++|+++++.+.++
T Consensus       149 ak~g~gv~e~f~~l~~~i~ek  169 (169)
T d3raba_         149 AKDNINVKQTFERLVDVICEK  169 (169)
T ss_dssp             TTTTBSHHHHHHHHHHHHHTC
T ss_pred             CCCCcCHHHHHHHHHHHHhhC
Confidence            999999999999999988653

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-37  Score=218.91  Aligned_cols=163  Identities=33%  Similarity=0.514  Sum_probs=149.0

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEE
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLL  100 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~  100 (205)
                      ++++||+++|++|+|||||+++|.++++...+.++.++.+.....+++..+.+.+||++|++.+...+..++++++++++
T Consensus         1 mk~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~il   80 (167)
T d1kaoa_           1 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL   80 (167)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred             CceeEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeeeeeeeeecCcceEeeccccCCCccccccchHHHhhcccceee
Confidence            46899999999999999999999999999999999888777788899999999999999999999999999999999999


Q ss_pred             EEECCCcchHHHHHHHHHHHHhhhC--CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcc
Q psy15714        101 CFSIGSTSSYENILSKWYPELKHHC--PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECS  178 (205)
Q Consensus       101 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  178 (205)
                      |||++++.++.++. .|...+....  +++|++||+||+|+...+            .+..++++.+++.+++. +++||
T Consensus        81 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilvgnK~Dl~~~~------------~~~~~~~~~~~~~~~~~-~~e~S  146 (167)
T d1kaoa_          81 VYSLVNQQSFQDIK-PMRDQIIRVKRYEKVPVILVGNKVDLESER------------EVSSSEGRALAEEWGCP-FMETS  146 (167)
T ss_dssp             EEETTCHHHHHHHH-HHHHHHHHHTTTSCCCEEEEEECGGGGGGC------------CSCHHHHHHHHHHHTSC-EEEEC
T ss_pred             eeeecchhhhhhhh-chhhhhhhhccCCCCCEEEEEEccchhhcc------------cchHHHHHHHHHHcCCe-EEEEC
Confidence            99999999999998 7777776544  689999999999998765            77888999999999987 99999


Q ss_pred             cCCCCCHHHHHHHHHHHHH
Q psy15714        179 AKLNEGLDQVFIAAVRSAV  197 (205)
Q Consensus       179 a~~~~~i~~~~~~i~~~~~  197 (205)
                      |++|.|++++|+++++.+.
T Consensus       147 ak~g~~i~e~f~~i~~~i~  165 (167)
T d1kaoa_         147 AKSKTMVDELFAEIVRQMN  165 (167)
T ss_dssp             TTCHHHHHHHHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHHc
Confidence            9999999999999998765

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-37  Score=218.92  Aligned_cols=165  Identities=35%  Similarity=0.586  Sum_probs=146.0

Q ss_pred             eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEE
Q psy15714         22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLC  101 (205)
Q Consensus        22 ~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v  101 (205)
                      ..+||+++|.+|+|||||+++|..+.+...+.+|.+......+.+++..+.+.+||++|.+.+...+..++..+|++++|
T Consensus         4 ~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv   83 (171)
T d2erya1           4 EKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLV   83 (171)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCEEEEEEEEETTEEEEEEEEECC----CCHHHHHHHHHCSEEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCCCCcccCcccccceeeeeeecccccccccccccccccccccccccccccceEEEe
Confidence            45899999999999999999999999999999998888888889999999999999999999999988999999999999


Q ss_pred             EECCCcchHHHHHHHHHHHHhhhC--CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEccc
Q psy15714        102 FSIGSTSSYENILSKWYPELKHHC--PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSA  179 (205)
Q Consensus       102 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  179 (205)
                      ||++++.|++.+. .|...+.+..  .+.|+++|+||+|+...+            .++.++++.+++.+++. |++|||
T Consensus        84 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~------------~v~~~~~~~~~~~~~~~-~~e~Sa  149 (171)
T d2erya1          84 FSVTDRGSFEEIY-KFQRQILRVKDRDEFPMILIGNKADLDHQR------------QVTQEEGQQLARQLKVT-YMEASA  149 (171)
T ss_dssp             EETTCHHHHHTHH-HHHHHHHHHHTSSCCSEEEEEECTTCTTSC------------SSCHHHHHHHHHHTTCE-EEECBT
T ss_pred             eccccccchhhHH-HHhHHHHhhcccCCCCEEEEEeccchhhhc------------cchHHHHHHHHHHcCCE-EEEEcC
Confidence            9999999999987 6776655443  689999999999997765            78889999999999987 999999


Q ss_pred             CCCCCHHHHHHHHHHHHHhhc
Q psy15714        180 KLNEGLDQVFIAAVRSAVKKQ  200 (205)
Q Consensus       180 ~~~~~i~~~~~~i~~~~~~~~  200 (205)
                      ++|.||+++|.+|++.+.+.+
T Consensus       150 k~~~~i~e~f~~l~~~i~k~~  170 (171)
T d2erya1         150 KIRMNVDQAFHELVRVIRKFQ  170 (171)
T ss_dssp             TTTBSHHHHHHHHHHHHHHHT
T ss_pred             CCCcCHHHHHHHHHHHHHHhh
Confidence            999999999999999986554

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.6e-38  Score=221.64  Aligned_cols=161  Identities=29%  Similarity=0.520  Sum_probs=145.0

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEE
Q psy15714         23 ALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCF  102 (205)
Q Consensus        23 ~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~  102 (205)
                      ++||+++|.+|+|||||+++|..+.+.+.+.+|.+..+.....+++..+.+.+||++|++.+...+..+++.+|++++||
T Consensus         2 ~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv~   81 (171)
T d2erxa1           2 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVY   81 (171)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeeccccceeeccccceeccccccccccccccccccccceeEEEEEe
Confidence            58999999999999999999999999999999998888778889999999999999999999999999999999999999


Q ss_pred             ECCCcchHHHHHHHHHHHHhhh---CCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEccc
Q psy15714        103 SIGSTSSYENILSKWYPELKHH---CPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSA  179 (205)
Q Consensus       103 d~~~~~s~~~~~~~~~~~~~~~---~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  179 (205)
                      |+++++++..+. .|...+.+.   ..++|+++|+||+|+...+            .++.++++.+++.+++. +++|||
T Consensus        82 d~~~~~s~~~~~-~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~------------~v~~~e~~~~~~~~~~~-~~e~Sa  147 (171)
T d2erxa1          82 SITSRQSLEELK-PIYEQICEIKGDVESIPIMLVGNKCDESPSR------------EVQSSEAEALARTWKCA-FMETSA  147 (171)
T ss_dssp             ETTCHHHHHTTH-HHHHHHHHHHC---CCCEEEEEECGGGGGGC------------CSCHHHHHHHHHHHTCE-EEECBT
T ss_pred             ecccccchhccc-chhhhhhhhhccCCCCcEEEEeecccccccc------------cccHHHHHHHHHHcCCe-EEEEcC
Confidence            999999999987 676655442   2689999999999997765            78889999999999987 999999


Q ss_pred             CCCCCHHHHHHHHHHHHH
Q psy15714        180 KLNEGLDQVFIAAVRSAV  197 (205)
Q Consensus       180 ~~~~~i~~~~~~i~~~~~  197 (205)
                      ++|+||+++|+.|++.+.
T Consensus       148 k~~~~v~e~f~~l~~~~~  165 (171)
T d2erxa1         148 KLNHNVKELFQELLNLEK  165 (171)
T ss_dssp             TTTBSHHHHHHHHHHTCC
T ss_pred             CCCcCHHHHHHHHHHHHH
Confidence            999999999999997654

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-37  Score=218.27  Aligned_cols=163  Identities=31%  Similarity=0.507  Sum_probs=143.7

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEE
Q psy15714         23 ALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCF  102 (205)
Q Consensus        23 ~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~  102 (205)
                      ++||+++|++|+|||||+++|..+.|.+.+.||++..+...+..++..+.+.+||++|++.+.. +..+++.++++++||
T Consensus         2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~-~~~~~~~~~~~ilv~   80 (168)
T d2atva1           2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDTIQ-REGHMRWGEGFVLVY   80 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCCCHH-HHHHHHHCSEEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeccccccccccccceEEEEeeccccccccc-chhhhcccccceeec
Confidence            5899999999999999999999999999999999888877888899999999999999988754 445788999999999


Q ss_pred             ECCCcchHHHHHHHHHHHHhh--hCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccC
Q psy15714        103 SIGSTSSYENILSKWYPELKH--HCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAK  180 (205)
Q Consensus       103 d~~~~~s~~~~~~~~~~~~~~--~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  180 (205)
                      |++++.++..+. .|......  ..++.|+++|+||+|+...+            .++.++++.+++.+++. |++|||+
T Consensus        81 d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilvgnK~Dl~~~r------------~V~~~e~~~~a~~~~~~-~~e~Sak  146 (168)
T d2atva1          81 DITDRGSFEEVL-PLKNILDEIKKPKNVTLILVGNKADLDHSR------------QVSTEEGEKLATELACA-FYECSAC  146 (168)
T ss_dssp             ETTCHHHHHTHH-HHHHHHHHHHTTSCCCEEEEEECGGGGGGC------------CSCHHHHHHHHHHHTSE-EEECCTT
T ss_pred             ccCCccchhhhh-hhcccccccccccCcceeeeccchhhhhhc------------cCcHHHHHHHHHHhCCe-EEEEccc
Confidence            999999999987 56554433  23689999999999997654            78999999999999986 9999999


Q ss_pred             CCC-CHHHHHHHHHHHHHhhc
Q psy15714        181 LNE-GLDQVFIAAVRSAVKKQ  200 (205)
Q Consensus       181 ~~~-~i~~~~~~i~~~~~~~~  200 (205)
                      +|+ ||+++|..+++.+.+++
T Consensus       147 tg~gnV~e~F~~l~~~i~~~r  167 (168)
T d2atva1         147 TGEGNITEIFYELCREVRRRR  167 (168)
T ss_dssp             TCTTCHHHHHHHHHHHHHHHH
T ss_pred             cCCcCHHHHHHHHHHHHHHhc
Confidence            998 59999999999887653

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=9.9e-37  Score=213.99  Aligned_cols=162  Identities=28%  Similarity=0.524  Sum_probs=147.1

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEE
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFL   99 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   99 (205)
                      ++++||+++|.+|+|||||+++|..+++...+.+|.+..+ ......++....+.+||++|++.+..++..++..+++++
T Consensus         2 ~k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (167)
T d1z0ja1           2 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI   81 (167)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred             CceeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCchhhhHHHHHHHhhccceE
Confidence            5789999999999999999999999999999899887776 456777888899999999999999999999999999999


Q ss_pred             EEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcc
Q psy15714        100 LCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECS  178 (205)
Q Consensus       100 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  178 (205)
                      +|||+++++++..+. .|...+.... ++.|+++|+||+|+...+            .++.++++.+++..++. |++||
T Consensus        82 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~iilvgnK~Dl~~~~------------~v~~~~~~~~~~~~~~~-~~e~S  147 (167)
T d1z0ja1          82 IVYDITKEETFSTLK-NWVRELRQHGPPSIVVAIAGNKCDLTDVR------------EVMERDAKDYADSIHAI-FVETS  147 (167)
T ss_dssp             EEEETTCHHHHHHHH-HHHHHHHHHSCTTSEEEEEEECTTCGGGC------------CSCHHHHHHHHHHTTCE-EEECB
T ss_pred             EEeeechhhhhhhHH-HhhhhhhhccCCcceEEEecccchhcccc------------chhHHHHHHHHHHcCCE-EEEEe
Confidence            999999999999997 6776666655 789999999999997655            78889999999999986 99999


Q ss_pred             cCCCCCHHHHHHHHHHHH
Q psy15714        179 AKLNEGLDQVFIAAVRSA  196 (205)
Q Consensus       179 a~~~~~i~~~~~~i~~~~  196 (205)
                      |++|+||+++|.+|++.+
T Consensus       148 Ak~~~nV~e~f~~l~~~i  165 (167)
T d1z0ja1         148 AKNAININELFIEISRRI  165 (167)
T ss_dssp             TTTTBSHHHHHHHHHHHC
T ss_pred             cCCCCCHHHHHHHHHHhC
Confidence            999999999999998875

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-36  Score=213.52  Aligned_cols=168  Identities=27%  Similarity=0.480  Sum_probs=149.8

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEE
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFL   99 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   99 (205)
                      ...+||+++|.+|+|||||+++|..+.+.+.+.++.+... ...+..++..+.+.+||+||++++..+++.++..+++++
T Consensus         3 ~~~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (174)
T d2bmea1           3 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGAL   82 (174)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEE
T ss_pred             cEEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCchhhhhhHHHHhhhCCEEE
Confidence            4569999999999999999999999999988888887776 456778899999999999999999999999999999999


Q ss_pred             EEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcc
Q psy15714        100 LCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECS  178 (205)
Q Consensus       100 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  178 (205)
                      +|||.++++++..+. .|...+.... +++|+++|+||+|+....            ....+++..+++..++. ++++|
T Consensus        83 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piivv~nK~D~~~~~------------~~~~~~~~~~~~~~~~~-~~e~S  148 (174)
T d2bmea1          83 LVYDITSRETYNALT-NWLTDARMLASQNIVIILCGNKKDLDADR------------EVTFLEASRFAQENELM-FLETS  148 (174)
T ss_dssp             EEEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECGGGGGGC------------CSCHHHHHHHHHHTTCE-EEECC
T ss_pred             EEEecccchhHHHHh-hhhcccccccCCceEEEEEEecccccchh------------chhhhHHHHHHHhCCCE-EEEee
Confidence            999999999999987 6666665554 789999999999987654            77888889999998877 99999


Q ss_pred             cCCCCCHHHHHHHHHHHHHhhccc
Q psy15714        179 AKLNEGLDQVFIAAVRSAVKKQDK  202 (205)
Q Consensus       179 a~~~~~i~~~~~~i~~~~~~~~~~  202 (205)
                      |++|+|++++|.++++.++++.++
T Consensus       149 ak~~~gi~e~f~~l~~~i~~~~~~  172 (174)
T d2bmea1         149 ALTGENVEEAFVQCARKILNKIES  172 (174)
T ss_dssp             TTTCTTHHHHHHHHHHHHHHHHHS
T ss_pred             CCCCcCHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999887664

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.4e-37  Score=214.43  Aligned_cols=163  Identities=34%  Similarity=0.572  Sum_probs=149.3

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEE
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLL  100 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~  100 (205)
                      ++++||+++|+++||||||+++|.++.+...+.++.+..+...+..++..+.+.+||++|++.+...+..++..++++++
T Consensus         1 m~e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ii   80 (166)
T d1ctqa_           1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC   80 (166)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEEE
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeeccceeeeceeeeeeeeeccCccccccchhhhhhcccccce
Confidence            36799999999999999999999999999999999988887778889999999999999999999999999999999999


Q ss_pred             EEECCCcchHHHHHHHHHHHHhhhC--CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcc
Q psy15714        101 CFSIGSTSSYENILSKWYPELKHHC--PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECS  178 (205)
Q Consensus       101 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  178 (205)
                      |||++++.+++.+. .|+..+.+..  +++|+++|+||+|+...             .++.++++.+++.+++. +++||
T Consensus        81 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~-------------~~~~~~~~~~~~~~~~~-~~e~S  145 (166)
T d1ctqa_          81 VFAINNTKSFEDIH-QYREQIKRVKDSDDVPMVLVGNKCDLAAR-------------TVESRQAQDLARSYGIP-YIETS  145 (166)
T ss_dssp             EEETTCHHHHHTHH-HHHHHHHHHHTCSSCCEEEEEECTTCSCC-------------CSCHHHHHHHHHHHTCC-EEECC
T ss_pred             eecccccccHHHHH-HHHHHHHHhcCCCCCeEEEEecccccccc-------------cccHHHHHHHHHHhCCe-EEEEc
Confidence            99999999999987 8999887754  67999999999998654             67788999999999987 99999


Q ss_pred             cCCCCCHHHHHHHHHHHHHh
Q psy15714        179 AKLNEGLDQVFIAAVRSAVK  198 (205)
Q Consensus       179 a~~~~~i~~~~~~i~~~~~~  198 (205)
                      |++|+||+++|.++++.+.+
T Consensus       146 ak~g~gi~e~f~~i~~~i~~  165 (166)
T d1ctqa_         146 AKTRQGVEDAFYTLVREIRQ  165 (166)
T ss_dssp             TTTCTTHHHHHHHHHHHHHT
T ss_pred             CCCCcCHHHHHHHHHHHHHh
Confidence            99999999999999998753

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-36  Score=212.31  Aligned_cols=161  Identities=30%  Similarity=0.527  Sum_probs=145.0

Q ss_pred             eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEE
Q psy15714         22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLL  100 (205)
Q Consensus        22 ~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~  100 (205)
                      ..+||+|+|++|+|||||++++.++.+...+.++....+ .....+++..+.+.+||++|++.++.++..+++.+|++++
T Consensus         3 y~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~il   82 (166)
T d1z0fa1           3 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALM   82 (166)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEE
T ss_pred             EEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhHHHHHHHHhcCCcEEEE
Confidence            468999999999999999999999999988888777666 4677889999999999999999999999999999999999


Q ss_pred             EEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEccc
Q psy15714        101 CFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSA  179 (205)
Q Consensus       101 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  179 (205)
                      |||+++++++..+. .|...+.... ...|+++++||+|+....            .+..++++.+++..++. +++|||
T Consensus        83 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~iilvgnK~Dl~~~~------------~~~~~~~~~~~~~~~~~-~~e~Sa  148 (166)
T d1z0fa1          83 VYDITRRSTYNHLS-SWLTDARNLTNPNTVIILIGNKADLEAQR------------DVTYEEAKQFAEENGLL-FLEASA  148 (166)
T ss_dssp             EEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECTTCGGGC------------CSCHHHHHHHHHHTTCE-EEECCT
T ss_pred             EeccCchHHHHHHH-HHHHHHHhhccccceEEEEcccccchhhc------------ccHHHHHHHHHHHcCCE-EEEEeC
Confidence            99999999999987 6667676655 789999999999987665            77888999999999886 999999


Q ss_pred             CCCCCHHHHHHHHHHHH
Q psy15714        180 KLNEGLDQVFIAAVRSA  196 (205)
Q Consensus       180 ~~~~~i~~~~~~i~~~~  196 (205)
                      ++|+||+++|++|++.+
T Consensus       149 ktg~~v~e~f~~i~~~i  165 (166)
T d1z0fa1         149 KTGENVEDAFLEAAKKI  165 (166)
T ss_dssp             TTCTTHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            99999999999999875

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-36  Score=213.36  Aligned_cols=168  Identities=26%  Similarity=0.513  Sum_probs=145.4

Q ss_pred             eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEE
Q psy15714         22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLL  100 (205)
Q Consensus        22 ~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~  100 (205)
                      ..+||+|+|++|+|||||++++.++++.+.+.++..... .......+..+.+.+||++|++.++.+++.++..+|++|+
T Consensus         2 y~~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~il   81 (173)
T d2a5ja1           2 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL   81 (173)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEE
T ss_pred             eeEEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhHHHHHhhccCEEEE
Confidence            458999999999999999999999999888777776555 4566678889999999999999999999999999999999


Q ss_pred             EEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEccc
Q psy15714        101 CFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSA  179 (205)
Q Consensus       101 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  179 (205)
                      |||++++.+++.+. .|+..+.+.. .++|+++|+||+|+...+            ....++++.+++..+.. ++++||
T Consensus        82 v~d~~~~~sf~~~~-~~~~~~~~~~~~~~piilv~nK~D~~~~~------------~~~~~~~~~~a~~~~~~-~~e~Sa  147 (173)
T d2a5ja1          82 VYDITRRETFNHLT-SWLEDARQHSSSNMVIMLIGNKSDLESRR------------DVKREEGEAFAREHGLI-FMETSA  147 (173)
T ss_dssp             EEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECTTCGGGC------------CSCHHHHHHHHHHHTCE-EEEECT
T ss_pred             EEeecChHHHHhHH-HHHHHHHHhCCCCCeEEEEecCCchhhhh------------hhHHHHHHHHHHHcCCE-EEEecC
Confidence            99999999999998 5666666654 789999999999987665            67888999999999887 999999


Q ss_pred             CCCCCHHHHHHHHHHHHHhhcccC
Q psy15714        180 KLNEGLDQVFIAAVRSAVKKQDKS  203 (205)
Q Consensus       180 ~~~~~i~~~~~~i~~~~~~~~~~~  203 (205)
                      ++|+||+++|.++++.+.++.+++
T Consensus       148 ~tg~~V~e~f~~i~~~i~~~~~~~  171 (173)
T d2a5ja1         148 KTACNVEEAFINTAKEIYRKIQQG  171 (173)
T ss_dssp             TTCTTHHHHHHHHHHHHHHHHHTT
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHcc
Confidence            999999999999999999887664

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.3e-38  Score=220.39  Aligned_cols=162  Identities=29%  Similarity=0.545  Sum_probs=138.9

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEE
Q psy15714         23 ALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLC  101 (205)
Q Consensus        23 ~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v  101 (205)
                      ++||+++|++|+|||||+++|..+.+...+.+|++..+ ...+..++..+.+.+||++|+..+..+++.++++++++++|
T Consensus         3 ~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   82 (170)
T d1i2ma_           3 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIM   82 (170)
T ss_dssp             EEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeccccccccccccccccccccccccccccceecchhcccccchhhc
Confidence            68999999999999999999999999999999987665 56677888899999999999999999999999999999999


Q ss_pred             EECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCC
Q psy15714        102 FSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKL  181 (205)
Q Consensus       102 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  181 (205)
                      ||+++++|++++. .|+..+.+..+++|+++|+||+|+....              ..+++..+++..++. |+++||++
T Consensus        83 ~d~~~~~Sf~~~~-~~~~~~~~~~~~~piilvgnK~Dl~~~~--------------~~~~~~~~~~~~~~~-~~e~Sak~  146 (170)
T d1i2ma_          83 FDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDRK--------------VKAKSIVFHRKKNLQ-YYDISAKS  146 (170)
T ss_dssp             EETTSGGGGTTHH-HHHHHHHHHHCSCCEEEEEECCCCSCSC--------------CTTTSHHHHSSCSSE-EEEEBTTT
T ss_pred             cccccccccchhH-HHHHHHhhccCCCceeeecchhhhhhhh--------------hhhHHHHHHHHcCCE-EEEEeCCC
Confidence            9999999999987 7888887777899999999999997643              223455677777776 99999999


Q ss_pred             CCCHHHHHHHHHHHHHhhc
Q psy15714        182 NEGLDQVFIAAVRSAVKKQ  200 (205)
Q Consensus       182 ~~~i~~~~~~i~~~~~~~~  200 (205)
                      |+|++++|.+|++.++...
T Consensus       147 ~~~v~e~f~~l~~~l~~~~  165 (170)
T d1i2ma_         147 NYNFEKPFLWLARKLIGDP  165 (170)
T ss_dssp             TBTTTHHHHHHHHHHHTCT
T ss_pred             CCCHHHHHHHHHHHHccCC
Confidence            9999999999999987643

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-36  Score=211.97  Aligned_cols=159  Identities=27%  Similarity=0.516  Sum_probs=143.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEE
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCF  102 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~  102 (205)
                      +||+++|++|+|||||+++|.++++...+.++.+... ......++..+.+.+||++|++.++..+..++..++++++||
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~   80 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVY   80 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEE
T ss_pred             CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCcchhccchHHHhhccceEEEee
Confidence            6999999999999999999999999988888876555 456777888999999999999999999999999999999999


Q ss_pred             ECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCC
Q psy15714        103 SIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKL  181 (205)
Q Consensus       103 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  181 (205)
                      |++++.++.++. .|+..+.... +++|+++|+||+|+...+            .+..++++.+++.+++. +++|||++
T Consensus        81 d~~~~~s~~~i~-~~~~~~~~~~~~~~~iilvgnK~Dl~~~~------------~~~~~~~~~~~~~~~~~-~~e~SAk~  146 (164)
T d1yzqa1          81 DITNVNSFQQTT-KWIDDVRTERGSDVIIMLVGNKTDLADKR------------QVSIEEGERKAKELNVM-FIETSAKA  146 (164)
T ss_dssp             ETTCHHHHHTHH-HHHHHHHHHHTTSSEEEEEEECTTCGGGC------------CSCHHHHHHHHHHTTCE-EEECCTTT
T ss_pred             ccccccchhhhH-hhHHHHHHhcCCCceEEEEecccchhhhh------------hhhHHHHHHHHHHcCCE-EEEecCCC
Confidence            999999999988 6666665544 789999999999997665            77888999999999987 99999999


Q ss_pred             CCCHHHHHHHHHHHH
Q psy15714        182 NEGLDQVFIAAVRSA  196 (205)
Q Consensus       182 ~~~i~~~~~~i~~~~  196 (205)
                      |+||+++|++|++.+
T Consensus       147 g~~v~e~f~~i~~~l  161 (164)
T d1yzqa1         147 GYNVKQLFRRVAAAL  161 (164)
T ss_dssp             CTTHHHHHHHHHHHS
T ss_pred             CcCHHHHHHHHHHhh
Confidence            999999999999875

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.8e-36  Score=211.59  Aligned_cols=163  Identities=26%  Similarity=0.493  Sum_probs=145.9

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEE
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFL   99 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   99 (205)
                      ..++||+++|++|+|||||+++|..+++.+.+.++.+..+ .......+..+.+.+||++|++.+...+..+++++++++
T Consensus         4 ~~~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   83 (170)
T d1r2qa_           4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI   83 (170)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred             eeEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchhhhhhHHHHhhCcceEE
Confidence            3578999999999999999999999999998888887776 456778888999999999999999999999999999999


Q ss_pred             EEEECCCcchHHHHHHHHHHHHhh-hCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcc
Q psy15714        100 LCFSIGSTSSYENILSKWYPELKH-HCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECS  178 (205)
Q Consensus       100 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  178 (205)
                      +|||++++.++..+. .|...+.+ ..+++|+++|+||+|+...+            .++.++++.+++.+++. |++||
T Consensus        84 lv~d~~~~~s~~~~~-~~~~~~~~~~~~~~~iilvgnK~Dl~~~~------------~v~~e~~~~~~~~~~~~-~~e~S  149 (170)
T d1r2qa_          84 VVYDITNEESFARAK-NWVKELQRQASPNIVIALSGNKADLANKR------------AVDFQEAQSYADDNSLL-FMETS  149 (170)
T ss_dssp             EEEETTCHHHHHHHH-HHHHHHHHHSCTTCEEEEEEECGGGGGGC------------CSCHHHHHHHHHHTTCE-EEECC
T ss_pred             EEeccchhhHHHHHH-HHhhhhhhccCCCceEEeecccccccccc------------cccHHHHHHHHHhcCCE-EEEee
Confidence            999999999999988 56565554 44799999999999998765            78899999999999887 99999


Q ss_pred             cCCCCCHHHHHHHHHHHHH
Q psy15714        179 AKLNEGLDQVFIAAVRSAV  197 (205)
Q Consensus       179 a~~~~~i~~~~~~i~~~~~  197 (205)
                      |++|+||+++|.+|++.+.
T Consensus       150 Ak~g~~V~e~f~~l~~~i~  168 (170)
T d1r2qa_         150 AKTSMNVNEIFMAIAKKLP  168 (170)
T ss_dssp             TTTCTTHHHHHHHHHHTSC
T ss_pred             CCCCCCHHHHHHHHHHHHh
Confidence            9999999999999988654

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.4e-35  Score=211.67  Aligned_cols=166  Identities=25%  Similarity=0.529  Sum_probs=149.1

Q ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEE
Q psy15714         20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCF   98 (205)
Q Consensus        20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   98 (205)
                      ....+||+|+|++|+|||||+++|..+.+...+.++.+..+ ...+.+++..+.+.+||+||++.++.++..+++.++++
T Consensus         3 ~~~~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~~   82 (194)
T d2bcgy1           3 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGI   82 (194)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEE
T ss_pred             CCEEEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHhccCCEE
Confidence            34669999999999999999999999999999999988776 45788899999999999999999999999999999999


Q ss_pred             EEEEECCCcchHHHHHHHHHHHHhh-hCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEc
Q psy15714         99 LLCFSIGSTSSYENILSKWYPELKH-HCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLEC  177 (205)
Q Consensus        99 i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (205)
                      |+|||+++++++..+. .|...+.+ ...++|+++|+||+|+....            .+..++...+++..+.. ++++
T Consensus        83 i~v~d~t~~~s~~~~~-~~~~~~~~~~~~~~~iilv~nK~D~~~~~------------~~~~~~~~~~~~~~~~~-~~e~  148 (194)
T d2bcgy1          83 IIVYDVTDQESFNGVK-MWLQEIDRYATSTVLKLLVGNKCDLKDKR------------VVEYDVAKEFADANKMP-FLET  148 (194)
T ss_dssp             EEEEETTCHHHHHHHH-HHHHHHHHHSCTTCEEEEEEECTTCTTTC------------CSCHHHHHHHHHHTTCC-EEEC
T ss_pred             EEEEeCcchhhhhhHh-hhhhhhhhcccCCceEEEEEecccccccc------------chhHHHHhhhhhccCcc-eEEE
Confidence            9999999999999988 56555655 44789999999999998765            78888999999999988 9999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHhh
Q psy15714        178 SAKLNEGLDQVFIAAVRSAVKK  199 (205)
Q Consensus       178 Sa~~~~~i~~~~~~i~~~~~~~  199 (205)
                      ||++|+||+++|+++++.+.+.
T Consensus       149 SAk~g~gi~e~f~~l~~~i~~~  170 (194)
T d2bcgy1         149 SALDSTNVEDAFLTMARQIKES  170 (194)
T ss_dssp             CTTTCTTHHHHHHHHHHHHHHH
T ss_pred             ecCcCccHHHHHHHHHHHHHHH
Confidence            9999999999999999988763

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.7e-36  Score=212.94  Aligned_cols=168  Identities=29%  Similarity=0.549  Sum_probs=120.2

Q ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEE
Q psy15714         20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCF   98 (205)
Q Consensus        20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   98 (205)
                      ....+||+++|.+++|||||+++|..+.+.+.+.++.+..+ ...+.+++..+.+.+||+||++.+..++..+++.+|++
T Consensus         3 ~~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~~   82 (173)
T d2fu5c1           3 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   82 (173)
T ss_dssp             CSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEE
T ss_pred             ccEEEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHhccCCCEE
Confidence            35669999999999999999999999999888888877555 56788899999999999999999999999999999999


Q ss_pred             EEEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEc
Q psy15714         99 LLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLEC  177 (205)
Q Consensus        99 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (205)
                      |+|||++++.++..+. .|...+.... .+.|+++|+||.|+....            ....+++..++...++. +++|
T Consensus        83 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~iilv~~k~D~~~~~------------~~~~~~~~~~~~~~~~~-~~e~  148 (173)
T d2fu5c1          83 MLVYDITNEKSFDNIR-NWIRNIEEHASADVEKMILGNKCDVNDKR------------QVSKERGEKLALDYGIK-FMET  148 (173)
T ss_dssp             EEEEETTCHHHHHHHH-HHHHHHHHHSCTTCEEEEEEEC--CCSCC------------CSCHHHHHHHHHHHTCE-EEEC
T ss_pred             EEEEECCChhhHHHHH-HHHHHhhhhccCCceEEEEEecccchhhc------------ccHHHHHHHHHHhcCCE-EEEE
Confidence            9999999999999987 6666665444 789999999999988765            67778888999999887 9999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHhhcc
Q psy15714        178 SAKLNEGLDQVFIAAVRSAVKKQD  201 (205)
Q Consensus       178 Sa~~~~~i~~~~~~i~~~~~~~~~  201 (205)
                      ||++|+|++++|++|++.+..+.+
T Consensus       149 Sa~~g~gv~e~f~~l~~~i~~k~~  172 (173)
T d2fu5c1         149 SAKANINVENAFFTLARDIKAKMD  172 (173)
T ss_dssp             CC---CCHHHHHHHHHHHHHHHHH
T ss_pred             eCCCCCCHHHHHHHHHHHHHHhcC
Confidence            999999999999999999977654

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-35  Score=208.77  Aligned_cols=165  Identities=32%  Similarity=0.525  Sum_probs=142.5

Q ss_pred             eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEE
Q psy15714         22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLL  100 (205)
Q Consensus        22 ~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~  100 (205)
                      ..+||+++|++|+|||||++++.++.+...+.++.+... ...+.+++..+.+.+||++|++.|...+..+++.++++|+
T Consensus         3 ~~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~i~   82 (175)
T d2f9la1           3 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALL   82 (175)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEE
T ss_pred             EEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHHhhccCeEEE
Confidence            568999999999999999999999999888777776555 5677889999999999999999999999999999999999


Q ss_pred             EEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEccc
Q psy15714        101 CFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSA  179 (205)
Q Consensus       101 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  179 (205)
                      |||.+++.|+..+. .|+..+.... +++|+++|+||+|+.+.+            ....+....+.+..+.. +++|||
T Consensus        83 v~d~~~~~S~~~~~-~~~~~i~~~~~~~~piilvgnK~Dl~~~~------------~~~~~~~~~~~~~~~~~-~~e~Sa  148 (175)
T d2f9la1          83 VYDIAKHLTYENVE-RWLKELRDHADSNIVIMLVGNKSDLRHLR------------AVPTDEARAFAEKNNLS-FIETSA  148 (175)
T ss_dssp             EEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECTTCGGGC------------CSCHHHHHHHHHHTTCE-EEECCT
T ss_pred             EEECCCcccchhHH-HHHHHHHHhcCCCCcEEEEEeeecccccc------------cchHHHHHHhhcccCce-EEEEec
Confidence            99999999999988 6777777666 789999999999997654            56667777888777766 999999


Q ss_pred             CCCCCHHHHHHHHHHHHHhhc
Q psy15714        180 KLNEGLDQVFIAAVRSAVKKQ  200 (205)
Q Consensus       180 ~~~~~i~~~~~~i~~~~~~~~  200 (205)
                      ++|+|++++|+++++.+.+..
T Consensus       149 ~~g~~i~e~f~~l~~~i~~~~  169 (175)
T d2f9la1         149 LDSTNVEEAFKNILTEIYRIV  169 (175)
T ss_dssp             TTCTTHHHHHHHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHHHHh
Confidence            999999999999999876543

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.8e-35  Score=209.01  Aligned_cols=167  Identities=29%  Similarity=0.525  Sum_probs=131.4

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccccee-EE-ECCEEEEEEEEEcCCCcccccccccCcCCCcEEEE
Q psy15714         23 ALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDT-IT-VDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLL  100 (205)
Q Consensus        23 ~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~-~~-~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~  100 (205)
                      -+||+++|++|+|||||+++|.++++.+.+.++.+...... .. .+.....+.+||++|++.+...+..+++.++++++
T Consensus         2 ~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   81 (175)
T d1ky3a_           2 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVL   81 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhccceEEE
Confidence            48999999999999999999999999888888776665432 22 34455779999999999999999999999999999


Q ss_pred             EEECCCcchHHHHHHHHHHHHhhhC-----CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEE
Q psy15714        101 CFSIGSTSSYENILSKWYPELKHHC-----PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYL  175 (205)
Q Consensus       101 v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (205)
                      |||++++.+++.+. .|+..+....     .++|+++|+||+|+...+           +.++.++++++++.++..+++
T Consensus        82 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~-----------~~v~~~~~~~~~~~~~~~~~~  149 (175)
T d1ky3a_          82 VYDVTNASSFENIK-SWRDEFLVHANVNSPETFPFVILGNKIDAEESK-----------KIVSEKSAQELAKSLGDIPLF  149 (175)
T ss_dssp             EEETTCHHHHHTHH-HHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGG-----------CCSCHHHHHHHHHHTTSCCEE
T ss_pred             Eeecccccccchhh-hcchhhhhhhhhcccccCcEEEEecccchhhhh-----------cchhHHHHHHHHHHcCCCeEE
Confidence            99999999999986 8888775532     478999999999997653           157888999999999876699


Q ss_pred             EcccCCCCCHHHHHHHHHHHHHhhcc
Q psy15714        176 ECSAKLNEGLDQVFIAAVRSAVKKQD  201 (205)
Q Consensus       176 ~~Sa~~~~~i~~~~~~i~~~~~~~~~  201 (205)
                      +|||++|.||+++|++|++.++++++
T Consensus       150 e~SA~~g~gv~e~f~~l~~~~l~~~~  175 (175)
T d1ky3a_         150 LTSAKNAINVDTAFEEIARSALQQNQ  175 (175)
T ss_dssp             EEBTTTTBSHHHHHHHHHHHHHHHHC
T ss_pred             EEeCCCCcCHHHHHHHHHHHHHhccC
Confidence            99999999999999999999987764

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.8e-36  Score=215.22  Aligned_cols=168  Identities=28%  Similarity=0.493  Sum_probs=145.9

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEEC----------CEEEEEEEEEcCCCcccccccc
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVD----------NKTYDVTLWDTAGQEDYERLRP   89 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~----------~~~~~~~i~D~~g~~~~~~~~~   89 (205)
                      ...+||+++|++|+|||||+++|.++++.+.+.++....+ ...+.++          +..+.+.+||++|++.|+.+++
T Consensus         3 d~~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~~~   82 (186)
T d2f7sa1           3 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTT   82 (186)
T ss_dssp             SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHH
T ss_pred             CEEEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHHHH
Confidence            4569999999999999999999999999888887776655 3344333          3457899999999999999999


Q ss_pred             cCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhC--CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHH
Q psy15714         90 MSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC--PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRR  167 (205)
Q Consensus        90 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (205)
                      .+++++|++|+|||++++.+++.+. .|+..+....  ...|+++|+||+|+...+            .++.++++.+++
T Consensus        83 ~~~~~~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~------------~v~~~e~~~~~~  149 (186)
T d2f7sa1          83 AFFRDAMGFLLMFDLTSQQSFLNVR-NWMSQLQANAYCENPDIVLIGNKADLPDQR------------EVNERQARELAD  149 (186)
T ss_dssp             HHHTTCCEEEEEEETTCHHHHHHHH-HHHHTCCCCCTTTCCEEEEEEECTTCGGGC------------CSCHHHHHHHHH
T ss_pred             HHHhcCCEEEEEEeccccccceeee-eccchhhhhccCCCceEEEEeeeccchhhh------------cchHHHHHHHHH
Confidence            9999999999999999999999987 7887766544  678999999999998765            788999999999


Q ss_pred             HcCCceEEEcccCCCCCHHHHHHHHHHHHHhhccc
Q psy15714        168 KIKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQDK  202 (205)
Q Consensus       168 ~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~~  202 (205)
                      .+++. ++++||++|+||+++|+++++.+.+++++
T Consensus       150 ~~~~~-~~e~Sak~~~~i~e~f~~l~~~i~~k~~~  183 (186)
T d2f7sa1         150 KYGIP-YFETSAATGQNVEKAVETLLDLIMKRMEQ  183 (186)
T ss_dssp             HTTCC-EEEEBTTTTBTHHHHHHHHHHHHHHHHHH
T ss_pred             HcCCE-EEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Confidence            99986 99999999999999999999998876654

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-34  Score=204.24  Aligned_cols=165  Identities=28%  Similarity=0.472  Sum_probs=134.9

Q ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCC-cCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcE
Q psy15714         20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDY-VPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDC   97 (205)
Q Consensus        20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~-~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   97 (205)
                      ....+||+++|++++|||||++++..+++...+ .++++..+ ...+..++..+.+.+||+||++.++.++..+++++|+
T Consensus         3 ~d~~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~   82 (170)
T d2g6ba1           3 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHA   82 (170)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSE
T ss_pred             CceEEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhcCCce
Confidence            346789999999999999999999999986544 44444444 4568889999999999999999999999999999999


Q ss_pred             EEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEc
Q psy15714         98 FLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLEC  177 (205)
Q Consensus        98 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (205)
                      +++|||++++.++..+...|...........|+++|+||.|+....            .++.+++..+++.+++. ++++
T Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~d~~~~~------------~v~~~~~~~~~~~~~~~-~~e~  149 (170)
T d2g6ba1          83 LLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHER------------VVKREDGEKLAKEYGLP-FMET  149 (170)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCC------------CSCHHHHHHHHHHHTCC-EEEC
T ss_pred             eEEEecCCcccchhhhhhhhhhhhhccCCCceEEEEEeeechhhcc------------cccHHHHHHHHHHcCCE-EEEE
Confidence            9999999999999998844444444444789999999999998765            78889999999999986 9999


Q ss_pred             ccCCCCCHHHHHHHHHHHHH
Q psy15714        178 SAKLNEGLDQVFIAAVRSAV  197 (205)
Q Consensus       178 Sa~~~~~i~~~~~~i~~~~~  197 (205)
                      ||++|+||+++|++|++.+.
T Consensus       150 Sak~g~gi~e~f~~l~~~i~  169 (170)
T d2g6ba1         150 SAKTGLNVDLAFTAIAKELK  169 (170)
T ss_dssp             CTTTCTTHHHHHHHHHHHHH
T ss_pred             eCCCCcCHHHHHHHHHHHcC
Confidence            99999999999999998875

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.5e-35  Score=205.21  Aligned_cols=164  Identities=27%  Similarity=0.531  Sum_probs=145.0

Q ss_pred             eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEE
Q psy15714         22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLL  100 (205)
Q Consensus        22 ~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~  100 (205)
                      ..+||+++|++|+|||||+++|..+.+.+.+.+|.+..+ .+.+..++..+.+.+||++|++.+..+++.++..+|++++
T Consensus         2 ~~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~il   81 (170)
T d1ek0a_           2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALV   81 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             cEEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCchhHHHHHHHHHhccceEEE
Confidence            358999999999999999999999999999999988766 5678889999999999999999999999999999999999


Q ss_pred             EEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEccc
Q psy15714        101 CFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSA  179 (205)
Q Consensus       101 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  179 (205)
                      |||++++.++.++. .|...+.... ...|+++++||+|+.+...         .+.++.++++++++..++. |+++||
T Consensus        82 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~v~nk~d~~~~~~---------~~~v~~~~~~~~~~~~~~~-~~e~Sa  150 (170)
T d1ek0a_          82 VYDVTKPQSFIKAR-HWVKELHEQASKDIIIALVGNKIDMLQEGG---------ERKVAREEGEKLAEEKGLL-FFETSA  150 (170)
T ss_dssp             EEETTCHHHHHHHH-HHHHHHHHHSCTTCEEEEEEECGGGGGSSC---------CCCSCHHHHHHHHHHHTCE-EEECCT
T ss_pred             EEeCCcccchhhhh-hhhhhhccccccccceeeeecccccccccc---------hhhhhHHHHHHHHHHcCCE-EEEecC
Confidence            99999999999988 5665555544 7899999999999865421         1378889999999999985 999999


Q ss_pred             CCCCCHHHHHHHHHHHH
Q psy15714        180 KLNEGLDQVFIAAVRSA  196 (205)
Q Consensus       180 ~~~~~i~~~~~~i~~~~  196 (205)
                      ++|.||+++|..|++.+
T Consensus       151 k~g~gV~e~F~~i~~~i  167 (170)
T d1ek0a_         151 KTGENVNDVFLGIGEKI  167 (170)
T ss_dssp             TTCTTHHHHHHHHHTTS
T ss_pred             CCCcCHHHHHHHHHHHh
Confidence            99999999999988764

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-34  Score=204.06  Aligned_cols=164  Identities=32%  Similarity=0.528  Sum_probs=142.2

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEE
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFL   99 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   99 (205)
                      ..-+||+|+|++++|||||++++..+++...+.+|++... ......++..+.+.+||++|...+...+...+..+++++
T Consensus         4 ~~~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   83 (174)
T d1wmsa_           4 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCL   83 (174)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCcceehhhhhhhhhccceEE
Confidence            4568999999999999999999999999998888887776 456778899999999999999999999999999999999


Q ss_pred             EEEECCCcchHHHHHHHHHHHHhhhC-----CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceE
Q psy15714        100 LCFSIGSTSSYENILSKWYPELKHHC-----PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEY  174 (205)
Q Consensus       100 ~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (205)
                      ++||.+++.+++.+. .|+..+....     .++|+++|+||+|+.+.             .++.+++++++++.+..+|
T Consensus        84 ~~~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~~-------------~v~~~~~~~~~~~~~~~~~  149 (174)
T d1wmsa_          84 LTFSVDDSQSFQNLS-NWKKEFIYYADVKEPESFPFVILGNKIDISER-------------QVSTEEAQAWCRDNGDYPY  149 (174)
T ss_dssp             EEEETTCHHHHHTHH-HHHHHHHHHHTCSCTTTSCEEEEEECTTCSSC-------------SSCHHHHHHHHHHTTCCCE
T ss_pred             EEEeeecccccchhh-hHHHHHHHHhccccCCCceEEEeccccchhhc-------------cCcHHHHHHHHHHcCCCeE
Confidence            999999999999987 7887775532     47999999999998653             7888999999998876569


Q ss_pred             EEcccCCCCCHHHHHHHHHHHHHh
Q psy15714        175 LECSAKLNEGLDQVFIAAVRSAVK  198 (205)
Q Consensus       175 ~~~Sa~~~~~i~~~~~~i~~~~~~  198 (205)
                      ++|||++|+||+++|+++++.++.
T Consensus       150 ~e~Sak~~~gI~e~f~~l~~~il~  173 (174)
T d1wmsa_         150 FETSAKDATNVAAAFEEAVRRVLA  173 (174)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             EEEcCCCCcCHHHHHHHHHHHHhc
Confidence            999999999999999999998864

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-34  Score=204.25  Aligned_cols=165  Identities=29%  Similarity=0.545  Sum_probs=147.7

Q ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEE
Q psy15714         20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCF   98 (205)
Q Consensus        20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   98 (205)
                      ....+||+++|.+|+|||||+++|.++++...+.++.+... ...+.+++..+.+.+||+||++.++.+++.++..+|++
T Consensus         4 ~~~~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~i   83 (177)
T d1x3sa1           4 VLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGV   83 (177)
T ss_dssp             EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEE
T ss_pred             ccceeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence            35679999999999999999999999999888888776665 45678899999999999999999999999999999999


Q ss_pred             EEEEECCCcchHHHHHHHHHHHHhhhC--CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEE
Q psy15714         99 LLCFSIGSTSSYENILSKWYPELKHHC--PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLE  176 (205)
Q Consensus        99 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (205)
                      ++|||++++.++..+. .|+..+.+..  ...|+++++||.|....             .+..++++.+++.++.. +++
T Consensus        84 i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~i~~~~nk~d~~~~-------------~v~~~~~~~~~~~~~~~-~~e  148 (177)
T d1x3sa1          84 ILVYDVTRRDTFVKLD-NWLNELETYCTRNDIVNMLVGNKIDKENR-------------EVDRNEGLKFARKHSML-FIE  148 (177)
T ss_dssp             EEEEETTCHHHHHTHH-HHHHHHTTCCSCSCCEEEEEEECTTSSSC-------------CSCHHHHHHHHHHTTCE-EEE
T ss_pred             EEEEECCCccccccch-hhhhhhcccccccceeeEEEeeccccccc-------------cccHHHHHHHHHHCCCE-EEE
Confidence            9999999999999987 7888776654  57899999999997653             78889999999999986 999


Q ss_pred             cccCCCCCHHHHHHHHHHHHHhh
Q psy15714        177 CSAKLNEGLDQVFIAAVRSAVKK  199 (205)
Q Consensus       177 ~Sa~~~~~i~~~~~~i~~~~~~~  199 (205)
                      +||++|+|++++|+++++.+++.
T Consensus       149 ~Sa~tg~gv~e~f~~l~~~l~~~  171 (177)
T d1x3sa1         149 ASAKTCDGVQCAFEELVEKIIQT  171 (177)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHHTS
T ss_pred             EeCCCCCCHHHHHHHHHHHHccC
Confidence            99999999999999999998864

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=8.5e-35  Score=203.83  Aligned_cols=162  Identities=27%  Similarity=0.622  Sum_probs=139.3

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEE
Q psy15714         23 ALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLC  101 (205)
Q Consensus        23 ~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v  101 (205)
                      -+||+++|.+++|||||+++|..+++.+.+.+|.+..+ ...+.+++..+.+.+||+||++.|+.++..++++++++++|
T Consensus         2 ~~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v   81 (166)
T d1g16a_           2 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILV   81 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence            48999999999999999999999999999999988777 46788899999999999999999999999999999999999


Q ss_pred             EECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccC
Q psy15714        102 FSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAK  180 (205)
Q Consensus       102 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  180 (205)
                      ||.+++.+++.+. .|...+.... ...|++++++|.|+...             ....++++.+++.++.. +++|||+
T Consensus        82 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~i~~~~k~d~~~~-------------~~~~~~~~~~~~~~~~~-~~~~Sa~  146 (166)
T d1g16a_          82 YDITDERTFTNIK-QWFKTVNEHANDEAQLLLVGNKSDMETR-------------VVTADQGEALAKELGIP-FIESSAK  146 (166)
T ss_dssp             EETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECTTCTTC-------------CSCHHHHHHHHHHHTCC-EEECBTT
T ss_pred             EECCCccCHHHHH-hhhhhhhccccCcceeeeecchhhhhhh-------------hhhHHHHHHHHHhcCCe-EEEECCC
Confidence            9999999999987 5655555554 78899999999998765             67788999999999986 9999999


Q ss_pred             CCCCHHHHHHHHHHHHHhh
Q psy15714        181 LNEGLDQVFIAAVRSAVKK  199 (205)
Q Consensus       181 ~~~~i~~~~~~i~~~~~~~  199 (205)
                      +|+|++++|++|++.+.++
T Consensus       147 ~~~~v~e~f~~l~~~i~~k  165 (166)
T d1g16a_         147 NDDNVNEIFFTLAKLIQEK  165 (166)
T ss_dssp             TTBSHHHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHhc
Confidence            9999999999999988764

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-34  Score=203.46  Aligned_cols=163  Identities=25%  Similarity=0.371  Sum_probs=136.1

Q ss_pred             eeeEEEEECCCCCCHHHHHHHHhcCCCCC-CCcCccc-cccceeEEECCEEEEEEEEEcCC---CcccccccccCcCCCc
Q psy15714         22 KALKVTTVGDGMVGKTCLLITHTENKFPT-DYVPTVF-DNYPDTITVDNKTYDVTLWDTAG---QEDYERLRPMSYPNTD   96 (205)
Q Consensus        22 ~~~ki~v~G~~~~GKstli~~~~~~~~~~-~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g---~~~~~~~~~~~~~~~~   96 (205)
                      ..+||+++|++|+|||||+++|.+..+.. ...++++ ..+...+.+++..+.+.+||+++   ++++  ++..+++.+|
T Consensus         2 ~~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~--~~~~~~~~~~   79 (172)
T d2g3ya1           2 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGD   79 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHH--HHHCCCCCCS
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeeccccccccccc--cccccccccc
Confidence            45899999999999999999999877643 2333333 34467788999999999999875   4444  4567899999


Q ss_pred             EEEEEEECCCcchHHHHHHHHHHHHhhhC--CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceE
Q psy15714         97 CFLLCFSIGSTSSYENILSKWYPELKHHC--PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEY  174 (205)
Q Consensus        97 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (205)
                      ++|+|||++++.++.++. .|...+....  +++|+++|+||+|+...+            .++.++++.+++.+++. |
T Consensus        80 ~~ilvfd~t~~~s~~~~~-~~~~~i~~~~~~~~~piilvgnK~Dl~~~~------------~v~~~~~~~~a~~~~~~-~  145 (172)
T d2g3ya1          80 AYLIVYSITDRASFEKAS-ELRIQLRRARQTEDIPIILVGNKSDLVRCR------------EVSVSEGRACAVVFDCK-F  145 (172)
T ss_dssp             EEEEEEETTCHHHHHHHH-HHHHHHHTSGGGTTSCEEEEEECTTCGGGC------------CSCHHHHHHHHHHHTCE-E
T ss_pred             eeeeeecccccchhhhhh-hhhhhhhhccccCCceEEEEeccccccccc------------cccHHHHHHHHHHcCCe-E
Confidence            999999999999999987 7877776543  689999999999998765            78889999999999986 9


Q ss_pred             EEcccCCCCCHHHHHHHHHHHHHhhc
Q psy15714        175 LECSAKLNEGLDQVFIAAVRSAVKKQ  200 (205)
Q Consensus       175 ~~~Sa~~~~~i~~~~~~i~~~~~~~~  200 (205)
                      +++||++|+||+++|++|++.+..++
T Consensus       146 ~e~Sak~g~~i~~~f~~l~~~i~~rr  171 (172)
T d2g3ya1         146 IETSAAVQHNVKELFEGIVRQVRLRR  171 (172)
T ss_dssp             EECBTTTTBSHHHHHHHHHHHHHHHC
T ss_pred             EEEeCCCCcCHHHHHHHHHHHHHHcc
Confidence            99999999999999999999987665

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=3.3e-34  Score=204.04  Aligned_cols=165  Identities=29%  Similarity=0.536  Sum_probs=144.0

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEE
Q psy15714         23 ALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLC  101 (205)
Q Consensus        23 ~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v  101 (205)
                      -+||+|+|.+|+|||||+++|.++++...+.+|.+..+ .......+..+.+.+||++|+..+...+..++..+++++++
T Consensus         2 ~~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~   81 (184)
T d1vg8a_           2 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLV   81 (184)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccccccccccCccEEEEe
Confidence            37999999999999999999999999998899887665 45677788889999999999999999999999999999999


Q ss_pred             EECCCcchHHHHHHHHHHHHhhhC-----CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEE
Q psy15714        102 FSIGSTSSYENILSKWYPELKHHC-----PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLE  176 (205)
Q Consensus       102 ~d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (205)
                      ||.+++.++..+. .|+..+....     .++|+++|+||+|+...             .+..++...++......++++
T Consensus        82 ~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~~-------------~~~~~~~~~~~~~~~~~~~~e  147 (184)
T d1vg8a_          82 FDVTAPNTFKTLD-SWRDEFLIQASPRDPENFPFVVLGNKIDLENR-------------QVATKRAQAWCYSKNNIPYFE  147 (184)
T ss_dssp             EETTCHHHHHTHH-HHHHHHHHHHCCSSGGGSCEEEEEECTTSSCC-------------CSCHHHHHHHHHHTTSCCEEE
T ss_pred             ecccchhhhhcch-hhHHHHHHHhccccccCCCEEEEEEeeccccc-------------chhHHHHHHHHHHhcCCeEEE
Confidence            9999999999987 8887775542     46899999999998664             577777778877766555999


Q ss_pred             cccCCCCCHHHHHHHHHHHHHhhcc
Q psy15714        177 CSAKLNEGLDQVFIAAVRSAVKKQD  201 (205)
Q Consensus       177 ~Sa~~~~~i~~~~~~i~~~~~~~~~  201 (205)
                      |||++|+||+++|+++++.+++++.
T Consensus       148 ~Sak~~~gI~e~f~~l~~~i~~~~~  172 (184)
T d1vg8a_         148 TSAKEAINVEQAFQTIARNALKQET  172 (184)
T ss_dssp             CBTTTTBSHHHHHHHHHHHHHHHHH
T ss_pred             EcCCCCcCHHHHHHHHHHHHHhccc
Confidence            9999999999999999999887643

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.8e-34  Score=201.93  Aligned_cols=165  Identities=20%  Similarity=0.334  Sum_probs=139.8

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEE
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLL  100 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~  100 (205)
                      ...+||+++|++++|||||+++|.++.+.. +.++....+...+.+++..+.+.|||++|+..+.     +++.+|++|+
T Consensus         3 ~p~~ki~vlG~~~vGKTsLi~~~~~~~f~~-~~~t~~~~~~~~i~v~~~~~~l~i~Dt~g~~~~~-----~~~~ad~~il   76 (175)
T d2bmja1           3 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQYKKEMLVDGQTHLVLIREEAGAPDAK-----FSGWADAVIF   76 (175)
T ss_dssp             CCEEEEEEECCTTTTHHHHHHHHHHSCCCC-CCCSSCEEEEEEEEETTEEEEEEEEECSSCCCHH-----HHHHCSEEEE
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHhCCCCC-cCCccceeEEEEeecCceEEEEEEeecccccccc-----cccccceeEE
Confidence            457999999999999999999999999865 4566677777778899999999999999987654     6778999999


Q ss_pred             EEECCCcchHHHHHHHHHHHHhhhC----CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEE
Q psy15714        101 CFSIGSTSSYENILSKWYPELKHHC----PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLE  176 (205)
Q Consensus       101 v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (205)
                      |||+++++||+++. .|+..+....    .++|+++|+||.|+.....          +.++.++++.++++....+|++
T Consensus        77 Vfd~~~~~Sf~~~~-~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~----------~~v~~~~~~~~~~~~~~~~~~e  145 (175)
T d2bmja1          77 VFSLEDENSFQAVS-RLHGQLSSLRGEGRGGLALALVGTQDRISASSP----------RVVGDARARALCADMKRCSYYE  145 (175)
T ss_dssp             EEETTCHHHHHHHH-HHHHHHHHHCC--CCCCEEEEEEECTTCCSSSC----------CCSCHHHHHHHHHTSTTEEEEE
T ss_pred             EeecccchhhhhhH-HHHHHHHHHhhcccCCccEEEEeeecCcchhhh----------cchhHHHHHHHHHHhCCCeEEE
Confidence            99999999999987 7888876543    5789999999999865432          2678889999987776666999


Q ss_pred             cccCCCCCHHHHHHHHHHHHHhhccc
Q psy15714        177 CSAKLNEGLDQVFIAAVRSAVKKQDK  202 (205)
Q Consensus       177 ~Sa~~~~~i~~~~~~i~~~~~~~~~~  202 (205)
                      |||++|.|++++|..+++.+...+++
T Consensus       146 ~SAk~~~~v~~~F~~l~~~i~~~~~~  171 (175)
T d2bmja1         146 TCATYGLNVDRVFQEVAQKVVTLRKQ  171 (175)
T ss_dssp             EBTTTTBTHHHHHHHHHHHHHHHHHH
T ss_pred             eCCCCCcCHHHHHHHHHHHHHHhhhh
Confidence            99999999999999999998876543

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.1e-33  Score=197.84  Aligned_cols=157  Identities=30%  Similarity=0.560  Sum_probs=138.9

Q ss_pred             eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCcccccc-cccCcCCCcEEE
Q psy15714         22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDYERL-RPMSYPNTDCFL   99 (205)
Q Consensus        22 ~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~-~~~~~~~~~~~i   99 (205)
                      +.+||+++|++|+|||||+++|..+++...+.++.+... .....+.+....+.+||++|...+... ++.+++++|+++
T Consensus         1 r~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i   80 (165)
T d1z06a1           1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVV   80 (165)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEE
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhccccceeeecCCCceE
Confidence            468999999999999999999999999988888887776 467778899999999999998877654 667899999999


Q ss_pred             EEEECCCcchHHHHHHHHHHHHhhhC--CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEc
Q psy15714        100 LCFSIGSTSSYENILSKWYPELKHHC--PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLEC  177 (205)
Q Consensus       100 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (205)
                      +|||++++++++++. .|+..+.+..  +++|++|||||+|+...+            .++.++++.+++.+++. +++|
T Consensus        81 lv~d~~~~~s~~~~~-~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~------------~v~~~~~~~~~~~~~~~-~~e~  146 (165)
T d1z06a1          81 FVYDMTNMASFHSLP-AWIEECKQHLLANDIPRILVGNKCDLRSAI------------QVPTDLAQKFADTHSMP-LFET  146 (165)
T ss_dssp             EEEETTCHHHHHTHH-HHHHHHHHHCCCSCCCEEEEEECTTCGGGC------------CSCHHHHHHHHHHTTCC-EEEC
T ss_pred             EEEEeehhhhhhhhh-hhhHHHHhhccCCCCeEEEEeccccchhcc------------chhHHHHHHHHHHCCCE-EEEE
Confidence            999999999999987 7888877654  689999999999998765            78999999999999986 9999


Q ss_pred             ccCC---CCCHHHHHHHH
Q psy15714        178 SAKL---NEGLDQVFIAA  192 (205)
Q Consensus       178 Sa~~---~~~i~~~~~~i  192 (205)
                      ||++   ++||+++|.+|
T Consensus       147 SAkt~~~~~~V~e~F~~l  164 (165)
T d1z06a1         147 SAKNPNDNDHVEAIFMTL  164 (165)
T ss_dssp             CSSSGGGGSCHHHHHHHH
T ss_pred             ecccCCcCcCHHHHHHHh
Confidence            9987   56999999886

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=100.00  E-value=4.1e-33  Score=194.84  Aligned_cols=162  Identities=19%  Similarity=0.252  Sum_probs=126.9

Q ss_pred             eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEE
Q psy15714         22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLC  101 (205)
Q Consensus        22 ~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v  101 (205)
                      +++||+++|++++|||||+++|..+++.+.+.+|.+..+. .+..++  +.+.+||+||++.+...+..++..++++++|
T Consensus         1 ~e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~~-~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   77 (164)
T d1zd9a1           1 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR-KITKGN--VTIKLWDIGGQPRFRSMWERYCRGVSAIVYM   77 (164)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE-EEEETT--EEEEEEEECCSHHHHTTHHHHHTTCSEEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHcCCCCCcccccceeeee-eeeeee--EEEEEeeccccccccccccccccccchhhcc
Confidence            4689999999999999999999999998888888765543 344555  7899999999999999999999999999999


Q ss_pred             EECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccC
Q psy15714        102 FSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAK  180 (205)
Q Consensus       102 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  180 (205)
                      ||++++.++......|...+.... +++|+++|+||.|+.......         .+........++..+. +++++||+
T Consensus        78 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~~~~---------~i~~~~~~~~~~~~~~-~~~e~Sa~  147 (164)
T d1zd9a1          78 VDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEK---------ELIEKMNLSAIQDREI-CCYSISCK  147 (164)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHH---------HHHHHTTGGGCCSSCE-EEEECCTT
T ss_pred             cccccccccchhhhhhhhhhhhhcccCCcEEEEEeccccchhhhHH---------HHHHHHHHHHHHhCCC-EEEEEeCc
Confidence            999999999998854555555443 789999999999987543211         1111112222223333 48999999


Q ss_pred             CCCCHHHHHHHHHHHH
Q psy15714        181 LNEGLDQVFIAAVRSA  196 (205)
Q Consensus       181 ~~~~i~~~~~~i~~~~  196 (205)
                      +|+|++++|+||++.+
T Consensus       148 ~g~gv~e~~~~l~~~~  163 (164)
T d1zd9a1         148 EKDNIDITLQWLIQHS  163 (164)
T ss_dssp             TCTTHHHHHHHHHHTC
T ss_pred             CCcCHHHHHHHHHHcc
Confidence            9999999999998753

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.98  E-value=1.4e-31  Score=187.02  Aligned_cols=159  Identities=16%  Similarity=0.211  Sum_probs=123.7

Q ss_pred             eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEE
Q psy15714         22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLC  101 (205)
Q Consensus        22 ~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v  101 (205)
                      +.+||+++|++|+|||||+++|.+..+. .+.+|.+... ..+..++  +.+.+||+||++.++..+..++..+++++++
T Consensus         1 k~~ki~ivG~~~~GKTsLi~~l~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   76 (165)
T d1ksha_           1 RELRLLMLGLDNAGKTTILKKFNGEDVD-TISPTLGFNI-KTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLIWV   76 (165)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTTCCCS-SCCCCSSEEE-EEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEEEE
T ss_pred             CcEEEEEECCCCCCHHHHHHHHcCCCCC-cccceEeeee-eeccccc--cceeeeecCcchhhhhHHHhhhhhhhcceee
Confidence            4689999999999999999999988763 3455554332 2344444  7899999999999999999999999999999


Q ss_pred             EECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHH--HHc--CCceEEE
Q psy15714        102 FSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMR--RKI--KAAEYLE  176 (205)
Q Consensus       102 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~  176 (205)
                      ||+++..++......|...+.... .++|++||+||+|+.....              .++.....  ...  ...++++
T Consensus        77 ~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~  142 (165)
T d1ksha_          77 VDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALS--------------CNAIQEALELDSIRSHHWRIQG  142 (165)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--------------HHHHHHHTTGGGCCSSCEEEEE
T ss_pred             eecccchhHHHHHHhhhhhhhhcccCCCceEEEEeccccccccC--------------HHHHHHHHHhhhhhcCCCEEEE
Confidence            999999999998866766665443 7899999999999976432              12211111  111  1234899


Q ss_pred             cccCCCCCHHHHHHHHHHHHHh
Q psy15714        177 CSAKLNEGLDQVFIAAVRSAVK  198 (205)
Q Consensus       177 ~Sa~~~~~i~~~~~~i~~~~~~  198 (205)
                      |||++|+|++++|+||++.+.+
T Consensus       143 ~Sa~~g~gv~e~~~~l~~~i~~  164 (165)
T d1ksha_         143 CSAVTGEDLLPGIDWLLDDISS  164 (165)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHHT
T ss_pred             EECCCCCCHHHHHHHHHHHHHc
Confidence            9999999999999999998765

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.97  E-value=5.1e-32  Score=191.24  Aligned_cols=163  Identities=18%  Similarity=0.276  Sum_probs=120.8

Q ss_pred             ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEE
Q psy15714         19 SVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCF   98 (205)
Q Consensus        19 ~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   98 (205)
                      ...+++||+++|++|+|||||++++.++++... .++.+.. ...+...+  +.+.+||++|++.++..+..+++.+|++
T Consensus        12 ~~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~-~~~~~~~-~~~i~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~i   87 (176)
T d1fzqa_          12 APDQEVRILLLGLDNAGKTTLLKQLASEDISHI-TPTQGFN-IKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTDIL   87 (176)
T ss_dssp             CCSSCEEEEEEESTTSSHHHHHHHHCCSCCEEE-EEETTEE-EEEEEETT--EEEEEEECSSCGGGHHHHHHHHTTCSEE
T ss_pred             CCCCEEEEEEECCCCCCHHHHHHHHhcCCCCcc-eeeeeee-EEEeccCC--eeEeEeeccccccchhHHHHHhhcccee
Confidence            345679999999999999999999999987533 2222222 23344444  7899999999999999999999999999


Q ss_pred             EEEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEc
Q psy15714         99 LLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLEC  177 (205)
Q Consensus        99 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (205)
                      ++|||++++.++.++...|........ .++|++||+||+|+..........+         ......++. ...++++|
T Consensus        88 i~v~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~~~~~~~~---------~~~~~~~~~-~~~~~~~~  157 (176)
T d1fzqa_          88 IYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAE---------GLNLHTIRD-RVWQIQSC  157 (176)
T ss_dssp             EEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHH---------HTTGGGCCS-SCEEEEEC
T ss_pred             EEeeccccccchhhhhhhhhhhhhhhccCCCeEEEEEEeccccccccHHHHHH---------HHHHHHHHh-cCCEEEEE
Confidence            999999999999998744444444433 6899999999999976532111000         000111122 23448999


Q ss_pred             ccCCCCCHHHHHHHHHHH
Q psy15714        178 SAKLNEGLDQVFIAAVRS  195 (205)
Q Consensus       178 Sa~~~~~i~~~~~~i~~~  195 (205)
                      ||++|+|++++|+||++.
T Consensus       158 SA~tg~gv~e~~~~l~~~  175 (176)
T d1fzqa_         158 SALTGEGVQDGMNWVCKN  175 (176)
T ss_dssp             CTTTCTTHHHHHHHHHHT
T ss_pred             eCCCCCCHHHHHHHHHhc
Confidence            999999999999999875

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.97  E-value=1.4e-31  Score=189.98  Aligned_cols=168  Identities=17%  Similarity=0.202  Sum_probs=121.1

Q ss_pred             ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEE
Q psy15714         19 SVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCF   98 (205)
Q Consensus        19 ~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   98 (205)
                      ...+.+||+++|++|||||||++++..+.+... .+|.+.. .......+  +.+.+||+||++.++..+..++..++++
T Consensus        13 ~~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~~-~~t~~~~-~~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~~~i   88 (182)
T d1moza_          13 GSNKELRILILGLDGAGKTTILYRLQIGEVVTT-KPTIGFN-VETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAV   88 (182)
T ss_dssp             TCSSCEEEEEEEETTSSHHHHHHHTCCSEEEEE-CSSTTCC-EEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEE
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHhcCCCCcc-ccccceE-EEEEeeCC--EEEEEEecccccccchhHHhhhccceeE
Confidence            456789999999999999999999988876432 3443332 22334444  7899999999999999999999999999


Q ss_pred             EEEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEc
Q psy15714         99 LLCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLEC  177 (205)
Q Consensus        99 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (205)
                      ++|||++++.++.+....|...+.... .+.|++||+||+|+.+.....+         +........++..+ .++++|
T Consensus        89 i~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~~~~~~---------i~~~~~~~~~~~~~-~~~~e~  158 (182)
T d1moza_          89 IFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASE---------VSKELNLVELKDRS-WSIVAS  158 (182)
T ss_dssp             EEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHH---------HHHHTTTTTCCSSC-EEEEEE
T ss_pred             EEEeeecccccchhHHHHHHHHHHhhccCCcceEEEEEeeccccccCHHH---------HHHHHHHHHHhhCC-CEEEEE
Confidence            999999999999998744445555444 6899999999999975321111         11111111122223 348999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHhhc
Q psy15714        178 SAKLNEGLDQVFIAAVRSAVKKQ  200 (205)
Q Consensus       178 Sa~~~~~i~~~~~~i~~~~~~~~  200 (205)
                      ||++|+|++++|++|++.+.+++
T Consensus       159 SA~~g~gv~e~~~~l~~~i~~~~  181 (182)
T d1moza_         159 SAIKGEGITEGLDWLIDVIKEEQ  181 (182)
T ss_dssp             BGGGTBTHHHHHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHHHHcC
Confidence            99999999999999999987654

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.97  E-value=8.9e-32  Score=189.54  Aligned_cols=163  Identities=19%  Similarity=0.237  Sum_probs=121.2

Q ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEE
Q psy15714         20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFL   99 (205)
Q Consensus        20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   99 (205)
                      ..+.+||+++|+++||||||++++..+.+... .+|.+... .......  +.+.+||+||+..++..+..+++.+++++
T Consensus         9 ~~k~~kIvlvG~~~vGKTSli~rl~~~~~~~~-~~t~~~~~-~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~~~ii   84 (173)
T d1e0sa_           9 GNKEMRILMLGLDAAGKTTILYKLKLGQSVTT-IPTVGFNV-ETVTYKN--VKFNVWDVGGQDKIRPLWRHYYTGTQGLI   84 (173)
T ss_dssp             TTCCEEEEEEEETTSSHHHHHHHTTCCCCEEE-EEETTEEE-EEEEETT--EEEEEEEESCCGGGHHHHGGGTTTCCEEE
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHhcCCCCCc-cceeeeeE-EEeeccc--eeeEEecCCCcchhhhHHHhhhcccceEE
Confidence            45679999999999999999999998886442 23322221 2233333  78999999999999999999999999999


Q ss_pred             EEEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcc
Q psy15714        100 LCFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECS  178 (205)
Q Consensus       100 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  178 (205)
                      +|||++++.++..+...|...+.... .+.|+++++||+|+.......+         +..+.+...++..++ ++++||
T Consensus        85 ~v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~---------i~~~~~~~~~~~~~~-~~~e~S  154 (173)
T d1e0sa_          85 FVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHE---------IQEKLGLTRIRDRNW-YVQPSC  154 (173)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHH---------HHHHTTGGGCCSSCE-EEEECB
T ss_pred             EEEecccchhHHHHHHHHHHHhhhcccccceeeeeeecccccccccHHH---------HHHHHHHHHHHhCCC-EEEEee
Confidence            99999999999998855555555443 6899999999999976432111         111111112222233 489999


Q ss_pred             cCCCCCHHHHHHHHHHHH
Q psy15714        179 AKLNEGLDQVFIAAVRSA  196 (205)
Q Consensus       179 a~~~~~i~~~~~~i~~~~  196 (205)
                      |++|+||+|+|++|.+.+
T Consensus       155 A~tg~gv~e~~~~l~~~~  172 (173)
T d1e0sa_         155 ATSGDGLYEGLTWLTSNY  172 (173)
T ss_dssp             TTTTBTHHHHHHHHHHHC
T ss_pred             CCCCcCHHHHHHHHHHhc
Confidence            999999999999998764

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.96  E-value=1.1e-29  Score=176.15  Aligned_cols=158  Identities=17%  Similarity=0.194  Sum_probs=121.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEEE
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFS  103 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d  103 (205)
                      +||+++|++|||||||++++.++++...+..+.    ......+...+.+.+||++|...++..+..++..+++++++||
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~d   76 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG----FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD   76 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSS----CCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcccccee----eEEEEEeeeeEEEEEecCCCcccchhhhhhhhccceeEEEEEE
Confidence            599999999999999999999998765443332    2233445566889999999999999999999999999999999


Q ss_pred             CCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCCC
Q psy15714        104 IGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLN  182 (205)
Q Consensus       104 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  182 (205)
                      ++++.++..+...|...+.... ...|+++++||.|+.+.....         ++.......+++..+. ++++|||++|
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~~~~---------~i~~~~~~~~~~~~~~-~~~~~SAktg  146 (160)
T d1r8sa_          77 SNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAA---------EITDKLGLHSLRHRNW-YIQATCATSG  146 (160)
T ss_dssp             TTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHH---------HHHHHTTGGGCSSCCE-EEEECBTTTT
T ss_pred             ecChHHHHHHHHHHHHHHHhhcccCceEEEEeecccccccccHH---------HHHHHHHHHHHhhCCC-EEEEeECCCC
Confidence            9999999998744445444333 689999999999987643111         1222222333444454 4999999999


Q ss_pred             CCHHHHHHHHHHH
Q psy15714        183 EGLDQVFIAAVRS  195 (205)
Q Consensus       183 ~~i~~~~~~i~~~  195 (205)
                      +|++++|++|.++
T Consensus       147 ~gi~e~~~~l~~~  159 (160)
T d1r8sa_         147 DGLYEGLDWLSNQ  159 (160)
T ss_dssp             BTHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHhc
Confidence            9999999999876

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.94  E-value=9.5e-27  Score=163.91  Aligned_cols=162  Identities=22%  Similarity=0.277  Sum_probs=114.7

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEE
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLL  100 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~  100 (205)
                      .+++||+|+|.+|||||||++++.++++... .++.+. ........+  ..+.+||+++++.++..+...+..++++++
T Consensus        13 ~k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~-~~~~~~-~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~i~   88 (177)
T d1zj6a1          13 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIGS-NVEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIV   88 (177)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCEEE-ECCSCS-SCEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEEE
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCcc-ccccce-eEEEEeecc--eEEEEeccccccccccchhhhhccceeeee
Confidence            5679999999999999999999999887542 222221 223444444  679999999999999999999999999999


Q ss_pred             EEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEccc
Q psy15714        101 CFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSA  179 (205)
Q Consensus       101 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  179 (205)
                      ++|.++..++......+........ .+.|+++|+||+|+.......+         +........++. ...+++++||
T Consensus        89 v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~---------i~~~~~~~~~~~-~~~~~~~~Sa  158 (177)
T d1zj6a1          89 VVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAE---------ISQFLKLTSIKD-HQWHIQACCA  158 (177)
T ss_dssp             EEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHH---------HHHHHTGGGCCS-SCEEEEECBT
T ss_pred             ecccccccchhhhhhhhhhhhhcccccceEEEEEEEcccccccCcHHH---------HHHHHHHHhhHh-cCCEEEEEeC
Confidence            9999999999887633333333322 7899999999999876432110         111111111122 2335999999


Q ss_pred             CCCCCHHHHHHHHHHHH
Q psy15714        180 KLNEGLDQVFIAAVRSA  196 (205)
Q Consensus       180 ~~~~~i~~~~~~i~~~~  196 (205)
                      ++|+|++++|++|.+.+
T Consensus       159 ~tg~Gi~e~~~~L~~~l  175 (177)
T d1zj6a1         159 LTGEGLCQGLEWMMSRL  175 (177)
T ss_dssp             TTTBTHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            99999999999999875

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.94  E-value=1.3e-27  Score=170.78  Aligned_cols=170  Identities=14%  Similarity=0.144  Sum_probs=119.2

Q ss_pred             eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEE
Q psy15714         22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLC  101 (205)
Q Consensus        22 ~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v  101 (205)
                      +++||+++|..|||||||+++|..+.++..+.+        ...++...+.+++||++|++.++..+..+++.++++++|
T Consensus         1 ~e~KivllG~~~vGKTsl~~r~~~~~~~t~~~~--------~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~v   72 (195)
T d1svsa1           1 REVKLLLLGAGESGKSTIVKQMKIIHEAGTGIV--------ETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFC   72 (195)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHSCCCSEE--------EEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCCccEE--------EEEEEeeeeeeeeeccccccccccchhhcccCCceeeeE
Confidence            579999999999999999999998877543322        223333447899999999999999999999999999999


Q ss_pred             EECCCcchH----------HHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhh---ccccccHHHHH----
Q psy15714        102 FSIGSTSSY----------ENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAA---EVDLVSTSQGK----  163 (205)
Q Consensus       102 ~d~~~~~s~----------~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~---~~~~~~~~~~~----  163 (205)
                      ||+++..++          .+....|...+.... .+.|+++++||+|+.............   .......+++.    
T Consensus        73 ~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (195)
T d1svsa1          73 VALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQ  152 (195)
T ss_dssp             EEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHHHHH
T ss_pred             EeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhhhhhccchHHHHHhhhhcCcccHHHHHHHHH
Confidence            999987654          233446777776554 789999999999985433221111110   00011122211    


Q ss_pred             -HHHHH-----cCCceEEEcccCCCCCHHHHHHHHHHHHHhh
Q psy15714        164 -KMRRK-----IKAAEYLECSAKLNEGLDQVFIAAVRSAVKK  199 (205)
Q Consensus       164 -~~~~~-----~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  199 (205)
                       .+.+.     .+..++++|||+++.||+++|+.+.+.++++
T Consensus       153 ~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~il~~  194 (195)
T d1svsa1         153 CQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKN  194 (195)
T ss_dssp             HHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcccCCCcceeEEEEeECCHhHHHHHHHHHHHHHhc
Confidence             11111     1223467899999999999999998888764

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.94  E-value=2.4e-26  Score=160.29  Aligned_cols=165  Identities=20%  Similarity=0.257  Sum_probs=123.8

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEE
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLL  100 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~  100 (205)
                      .+++||+++|.+|||||||++++.++++... .++.+... .....++  +.+.+||.+|...+.......+...+++++
T Consensus         3 ~ke~kI~ivG~~~vGKSSLi~~~~~~~~~~~-~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (169)
T d1upta_           3 TREMRILILGLDGAGKTTILYRLQVGEVVTT-IPTIGFNV-ETVTYKN--LKFQVWDLGGLTSIRPYWRCYYSNTDAVIY   78 (169)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHSSCCCC-CCCSSEEE-EEEEETT--EEEEEEEECCCGGGGGGGGGGCTTCSEEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhCCCCcce-ecccceee-eeeccCc--eEEEEeeccccccccccchhhhhhhhhhhh
Confidence            3569999999999999999999999988653 23322221 2333444  678999999999999999999999999999


Q ss_pred             EEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEccc
Q psy15714        101 CFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSA  179 (205)
Q Consensus       101 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  179 (205)
                      ++|+.+..++......+...+.... ...|+++++||.|+.......         .+..+.+..++...+. +++++||
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~~~---------~i~~~~~~~~~~~~~~-~~~~~SA  148 (169)
T d1upta_          79 VVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSS---------EMANSLGLPALKDRKW-QIFKTSA  148 (169)
T ss_dssp             EEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHH---------HHHHHHTGGGCTTSCE-EEEECCT
T ss_pred             hhhhhhcchhhhccchhhhhhhhhccccceEEEEEeeccccccccHH---------HHHHHHHHHHHhcCCC-EEEEEeC
Confidence            9999999888888755555554443 689999999999997653211         1112222233333444 4999999


Q ss_pred             CCCCCHHHHHHHHHHHHHhh
Q psy15714        180 KLNEGLDQVFIAAVRSAVKK  199 (205)
Q Consensus       180 ~~~~~i~~~~~~i~~~~~~~  199 (205)
                      ++|+|++++|++|++.+.++
T Consensus       149 ~~g~gv~e~~~~l~~~l~~k  168 (169)
T d1upta_         149 TKGTGLDEAMEWLVETLKSR  168 (169)
T ss_dssp             TTCTTHHHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhC
Confidence            99999999999999987554

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.94  E-value=3.7e-26  Score=161.21  Aligned_cols=157  Identities=20%  Similarity=0.125  Sum_probs=114.0

Q ss_pred             eeeEEEEECCCCCCHHHHHHHHhcCCCC--CCCcCccccccceeEEECCEEEEEEEEEcCCCcccccc--------cccC
Q psy15714         22 KALKVTTVGDGMVGKTCLLITHTENKFP--TDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERL--------RPMS   91 (205)
Q Consensus        22 ~~~ki~v~G~~~~GKstli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~   91 (205)
                      +.-.|+|+|.+|+|||||++++++.+..  .....++...........+  ..+.+||+||.......        ....
T Consensus         4 ~~~~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~   81 (178)
T d1wf3a1           4 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR--RQIVFVDTPGLHKPMDALGEFMDQEVYEA   81 (178)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT--EEEEEEECCCCCCCCSHHHHHHHHHHHHH
T ss_pred             cCcEEEEECCCCCCHHHHHHHHhCCCceeecccCCcccccccceeeeee--eeeeecccccccccccccchhcccccccc
Confidence            4457999999999999999999987642  2223333222223344455  56899999997443221        2235


Q ss_pred             cCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCC
Q psy15714         92 YPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKA  171 (205)
Q Consensus        92 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (205)
                      +.++|++++|+|+++..+...  ..|...++....+.|+++|+||+|+....               .+..+.+.+..+.
T Consensus        82 ~~~ad~il~v~D~~~~~~~~~--~~i~~~l~~~~~~~piilv~NK~Dl~~~~---------------~~~~~~~~~~~~~  144 (178)
T d1wf3a1          82 LADVNAVVWVVDLRHPPTPED--ELVARALKPLVGKVPILLVGNKLDAAKYP---------------EEAMKAYHELLPE  144 (178)
T ss_dssp             TSSCSEEEEEEETTSCCCHHH--HHHHHHHGGGTTTSCEEEEEECGGGCSSH---------------HHHHHHHHHTSTT
T ss_pred             cccccceeeeechhhhhcccc--cchhhheeccccchhhhhhhcccccccCH---------------HHHHHHHHhhccc
Confidence            788999999999988765444  36777787777789999999999986532               2334555566666


Q ss_pred             ceEEEcccCCCCCHHHHHHHHHHHHH
Q psy15714        172 AEYLECSAKLNEGLDQVFIAAVRSAV  197 (205)
Q Consensus       172 ~~~~~~Sa~~~~~i~~~~~~i~~~~~  197 (205)
                      ..++++||++|+|+++++++|.+.+.
T Consensus       145 ~~~~~iSA~~~~gi~~L~~~i~~~lp  170 (178)
T d1wf3a1         145 AEPRMLSALDERQVAELKADLLALMP  170 (178)
T ss_dssp             SEEEECCTTCHHHHHHHHHHHHTTCC
T ss_pred             CceEEEecCCCCCHHHHHHHHHHhCC
Confidence            66899999999999999999987654

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=4.4e-26  Score=163.32  Aligned_cols=174  Identities=17%  Similarity=0.110  Sum_probs=127.4

Q ss_pred             eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEE
Q psy15714         22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLC  101 (205)
Q Consensus        22 ~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v  101 (205)
                      +++||+++|..|||||||+++|..+.+.  +.||++..+.   .+....+.+++||++|++.++..+..+++.+++++++
T Consensus         1 ke~Kiv~lG~~~vGKTsll~r~~~~~~~--~~pTiG~~~~---~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~   75 (200)
T d2bcjq2           1 RELKLLLLGTGESGKSTFIKQMRIIHGS--GVPTTGIIEY---PFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFL   75 (200)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHTSS--CCCCCSCEEE---EEECSSCEEEEEECCCSTTGGGGGGGGCSSCSEEEEE
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhCCCCC--CCceeeEEEE---EEeccceeeeeccccccccccccccccccccceeeEe
Confidence            5799999999999999999999998873  5688775532   3334457899999999999999999999999999999


Q ss_pred             EECCCcc----------hHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhh----hhhccccccHHHHHHHH
Q psy15714        102 FSIGSTS----------SYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKK----KAAEVDLVSTSQGKKMR  166 (205)
Q Consensus       102 ~d~~~~~----------s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~----~~~~~~~~~~~~~~~~~  166 (205)
                      ||.++..          .+.+....|...+.... .++|+++++||.|+..........    ........+.+.+..+.
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  155 (200)
T d2bcjq2          76 VALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFI  155 (200)
T ss_dssp             EEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHHHHHHH
T ss_pred             eeccchhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhhhhcccchHHHHhcccccCCchhHHHHHHHH
Confidence            9988753          33444458888887665 799999999999986443221111    11111122333333332


Q ss_pred             HH---------cCCceEEEcccCCCCCHHHHHHHHHHHHHhhc
Q psy15714        167 RK---------IKAAEYLECSAKLNEGLDQVFIAAVRSAVKKQ  200 (205)
Q Consensus       167 ~~---------~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~  200 (205)
                      ..         .....+++|||++|.||+++|+.+.+.+++..
T Consensus       156 ~~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I~~~n  198 (200)
T d2bcjq2         156 LKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLN  198 (200)
T ss_dssp             HHHHHTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHHHHHHh
Confidence            11         11233689999999999999999998888654

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=8.6e-26  Score=156.70  Aligned_cols=163  Identities=17%  Similarity=0.223  Sum_probs=115.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEEEC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSI  104 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~  104 (205)
                      ||+++|+++||||||++++.++++.. +.++.+...   ...........+||++|...+...++.++..++++++++|.
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~~~-~~~t~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~   77 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWHPTS---EELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDA   77 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCC-CCCCCSCEE---EEECCTTCCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEET
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCe-eeceeeEeE---EEeccCCeeEEEEeeccchhhhhhHhhhhhheeeeeeeccc
Confidence            89999999999999999999998753 344443322   23333346788999999999999999999999999999999


Q ss_pred             CCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCCCC
Q psy15714        105 GSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNE  183 (205)
Q Consensus       105 ~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  183 (205)
                      ++..++......|........ .+.|+++++||.|+.......+............   ..........++++|||++|+
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~~~~~~~i~~~~~~~~~~~---~~~~~~~~~~~~~~~SA~tg~  154 (166)
T d2qtvb1          78 ADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTG---SQRIEGQRPVEVFMCSVVMRN  154 (166)
T ss_dssp             TCGGGHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSSCCCHHHHHHHHTCSSCCC------CCSSCCEEEEEEBTTTTB
T ss_pred             cchhhhhhhhHHHHhhhhhhccCCceEEEEeccccccccCCHHHHHHHhhhhhhhH---HHhhcccCCCEEEEeeCCCCC
Confidence            999998888744444433333 6899999999999976432222211111111100   111111223348999999999


Q ss_pred             CHHHHHHHHHH
Q psy15714        184 GLDQVFIAAVR  194 (205)
Q Consensus       184 ~i~~~~~~i~~  194 (205)
                      |++|+|+||.+
T Consensus       155 Gv~e~~~~l~~  165 (166)
T d2qtvb1         155 GYLEAFQWLSQ  165 (166)
T ss_dssp             SHHHHHHHHTT
T ss_pred             CHHHHHHHHhC
Confidence            99999999875

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.93  E-value=1.2e-24  Score=153.73  Aligned_cols=171  Identities=18%  Similarity=0.205  Sum_probs=113.6

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEE
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLL  100 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~  100 (205)
                      ++..||+++|++|||||||++++.++.+... .++.... ...+..++  ..+..||+.++..+...+.......+++++
T Consensus        11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~-~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (186)
T d1f6ba_          11 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQH-VPTLHPT-SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVF   86 (186)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS-CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCcce-ecccccc-eeEEEecc--cccccccccchhhhhhHHhhhhcccceeee
Confidence            5678999999999999999999999987543 3333333 23455666  458899999999999999999999999999


Q ss_pred             EEECCCcchHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhhhhcccccc---HHHHHHHHHHcCCceEEE
Q psy15714        101 CFSIGSTSSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKKAAEVDLVS---TSQGKKMRRKIKAAEYLE  176 (205)
Q Consensus       101 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~  176 (205)
                      ++|+++...+......+........ .+.|+++++||.|+.............+.....   ........+..+ .++++
T Consensus        87 ~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  165 (186)
T d1f6ba_          87 LVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARP-LEVFM  165 (186)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCC-EEEEE
T ss_pred             eeeccCccchHHHHHHHHHhhcccccCCCceEEEEeccCccccCCHHHHHHHHhhcccchhhhhhhHHHhhcCC-CEEEE
Confidence            9999999988887755555554333 789999999999987643221111111100000   000000111122 34899


Q ss_pred             cccCCCCCHHHHHHHHHHHH
Q psy15714        177 CSAKLNEGLDQVFIAAVRSA  196 (205)
Q Consensus       177 ~Sa~~~~~i~~~~~~i~~~~  196 (205)
                      |||++|+|++|+|+||.+.+
T Consensus       166 ~SA~tg~Gi~e~~~~l~~~i  185 (186)
T d1f6ba_         166 CSVLKRQGYGEGFRWMAQYI  185 (186)
T ss_dssp             CBTTTTBSHHHHHHHHHTTC
T ss_pred             EeCCCCCCHHHHHHHHHHhh
Confidence            99999999999999998753

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=1.4e-24  Score=155.57  Aligned_cols=173  Identities=18%  Similarity=0.152  Sum_probs=112.7

Q ss_pred             eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEE
Q psy15714         22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLC  101 (205)
Q Consensus        22 ~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v  101 (205)
                      +.+||+++|.+|||||||+++|.   +.+.+.||++... ..+...+  ..+.+||++|++.++..+..+++.+++++++
T Consensus         1 r~iKivllG~~~vGKTsll~r~~---f~~~~~pTiG~~~-~~~~~~~--~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~~   74 (200)
T d1zcba2           1 RLVKILLLGAGESGKSTFLKQMR---IIHGQDPTKGIHE-YDFEIKN--VPFKMVDVGGQRSERKRWFECFDSVTSILFL   74 (200)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHH---HHHSCCCCSSEEE-EEEEETT--EEEEEEEECC-------CTTSCTTCCEEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHh---cCCCCCCeeeeEE-EEEeeee--eeeeeecccceeeecccccccccccceeEEE
Confidence            46899999999999999999993   5556677877443 2344444  7899999999999999999999999999999


Q ss_pred             EECCCcc----------hHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhhhhh----hhccccccHHHHHHHH
Q psy15714        102 FSIGSTS----------SYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTIDKKK----AAEVDLVSTSQGKKMR  166 (205)
Q Consensus       102 ~d~~~~~----------s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~----~~~~~~~~~~~~~~~~  166 (205)
                      ||.++..          .+......|...+.... .++|+++++||+|+...........    ......-+.+.+.++.
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~  154 (200)
T d1zcba2          75 VSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFL  154 (200)
T ss_dssp             EETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHH
T ss_pred             EEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhhhhccccHHHHhCccccCCcchHHHHHHHH
Confidence            9998753          34444434455554433 6899999999999864322111100    0001111223333322


Q ss_pred             HHc----------CCceEEEcccCCCCCHHHHHHHHHHHHHhhc
Q psy15714        167 RKI----------KAAEYLECSAKLNEGLDQVFIAAVRSAVKKQ  200 (205)
Q Consensus       167 ~~~----------~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~  200 (205)
                      ...          ....+++|||+++.||+++|+.+.+.++++.
T Consensus       155 ~~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~i~~~~  198 (200)
T d1zcba2         155 VECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHDN  198 (200)
T ss_dssp             HHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHHHHHHHh
Confidence            211          1123568999999999999999988887653

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=3.6e-25  Score=153.48  Aligned_cols=149  Identities=23%  Similarity=0.277  Sum_probs=109.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCC--CCCcCccccccceeEEECCEEEEEEEEEcCCCccccc--------ccccCcC
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTENKFP--TDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYER--------LRPMSYP   93 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~~   93 (205)
                      +||+++|.+++|||||++++++.+..  .....+........+...+  ..+.+||++|......        ....++.
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~   79 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG--MPLHIIDTAGLREASDEVERIGIERAWQEIE   79 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT--EEEEEEECCCCSCCSSHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEeeeeeccC--ceeeeccccccccccccchhHHHHHHHHHHH
Confidence            79999999999999999999987653  2222232333234455566  5688999999544321        1224578


Q ss_pred             CCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCce
Q psy15714         94 NTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAE  173 (205)
Q Consensus        94 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (205)
                      .+|++++++|..+..++.... .|...+.....++|+++|+||+|+......           .         .+....+
T Consensus        80 ~~d~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~iilv~NK~Dl~~~~~~-----------~---------~~~~~~~  138 (161)
T d2gj8a1          80 QADRVLFMVDGTTTDAVDPAE-IWPEFIARLPAKLPITVVRNKADITGETLG-----------M---------SEVNGHA  138 (161)
T ss_dssp             TCSEEEEEEETTTCCCCSHHH-HCHHHHHHSCTTCCEEEEEECHHHHCCCCE-----------E---------EEETTEE
T ss_pred             hccccceeeccccccchhhhh-hhhhhhhhcccccceeeccchhhhhhhHHH-----------H---------HHhCCCc
Confidence            899999999999988877765 677777766678999999999998764311           0         1123345


Q ss_pred             EEEcccCCCCCHHHHHHHHHHH
Q psy15714        174 YLECSAKLNEGLDQVFIAAVRS  195 (205)
Q Consensus       174 ~~~~Sa~~~~~i~~~~~~i~~~  195 (205)
                      ++++||++|+||++++++|.+.
T Consensus       139 ~~~iSAk~~~gi~~L~~~l~~~  160 (161)
T d2gj8a1         139 LIRLSARTGEGVDVLRNHLKQS  160 (161)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            9999999999999999999875

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.91  E-value=3.1e-24  Score=150.22  Aligned_cols=155  Identities=23%  Similarity=0.177  Sum_probs=103.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCC--CCCcCccccccceeEEECCEEEEEEEEEcCCCccc---------ccccccCcC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENKFP--TDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY---------ERLRPMSYP   93 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~---------~~~~~~~~~   93 (205)
                      .|+++|.+|+|||||+++|++....  .....++.......+...+  ..+.+||++|....         ......++.
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~   79 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYG--KTFKLVDTCGVFDNPQDIISQKMKEVTLNMIR   79 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETT--EEEEEEECTTTTSSGGGCCCHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcceecccCceeeccccccccccc--cccccccccceeeeeccccccccccccccccc
Confidence            6899999999999999999976542  2223333322223334444  66889999994221         122233467


Q ss_pred             CCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCce
Q psy15714         94 NTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAE  173 (205)
Q Consensus        94 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (205)
                      .+|+++++.|..+.......  +|+..++..  ++|+++|+||+|+....              ..+...++. ..+...
T Consensus        80 ~ad~i~~~~~~~~~~~~~~~--~~~~~l~~~--~~pviiv~NK~Dl~~~~--------------~~~~~~~~~-~~~~~~  140 (171)
T d1mkya1          80 EADLVLFVVDGKRGITKEDE--SLADFLRKS--TVDTILVANKAENLREF--------------EREVKPELY-SLGFGE  140 (171)
T ss_dssp             TCSEEEEEEETTTCCCHHHH--HHHHHHHHH--TCCEEEEEESCCSHHHH--------------HHHTHHHHG-GGSSCS
T ss_pred             cCcEEEEeeccccccccccc--ccccccccc--cccccccchhhhhhhhh--------------hhHHHHHHH-hcCCCC
Confidence            89999999998876655442  677777777  89999999999986432              112222222 234445


Q ss_pred             EEEcccCCCCCHHHHHHHHHHHHHhhc
Q psy15714        174 YLECSAKLNEGLDQVFIAAVRSAVKKQ  200 (205)
Q Consensus       174 ~~~~Sa~~~~~i~~~~~~i~~~~~~~~  200 (205)
                      ++++||++|.|+++++++|.+.+.++.
T Consensus       141 ~i~iSAk~g~gid~L~~~i~~~l~e~~  167 (171)
T d1mkya1         141 PIPVSAEHNINLDTMLETIIKKLEEKG  167 (171)
T ss_dssp             CEECBTTTTBSHHHHHHHHHHHHHHTT
T ss_pred             eEEEecCCCCCHHHHHHHHHHhCCCCC
Confidence            799999999999999999999887664

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.91  E-value=8e-24  Score=149.32  Aligned_cols=157  Identities=18%  Similarity=0.064  Sum_probs=101.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccc-------cccCcCCCcE
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERL-------RPMSYPNTDC   97 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-------~~~~~~~~~~   97 (205)
                      .|+++|.++||||||+|+|++...........................+.+||+||.......       .-..+..+++
T Consensus         3 ~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~~   82 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRV   82 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCceeccCCCceeeeeceeeecCCCeEEEcCCCeeecCchHHHHHHHHHHHHHHhhhh
Confidence            489999999999999999997654322111112222222333333456889999995432111       1134678999


Q ss_pred             EEEEEECCCcchHHHHHHHHHHHHhh---hCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceE
Q psy15714         98 FLLCFSIGSTSSYENILSKWYPELKH---HCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEY  174 (205)
Q Consensus        98 ~i~v~d~~~~~s~~~~~~~~~~~~~~---~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (205)
                      +++++|..... ..... .|...+..   ...+.|+++|+||+|+.....              .++..+.....+.. +
T Consensus        83 ~~~~~d~~~~~-~~~~~-~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~~~--------------~~~~~~~~~~~~~~-~  145 (180)
T d1udxa2          83 LLYVLDAADEP-LKTLE-TLRKEVGAYDPALLRRPSLVALNKVDLLEEEA--------------VKALADALAREGLA-V  145 (180)
T ss_dssp             EEEEEETTSCH-HHHHH-HHHHHHHHHCHHHHHSCEEEEEECCTTSCHHH--------------HHHHHHHHHTTTSC-E
T ss_pred             hhhhccccccc-ccchh-hhhhhhhccccccchhhhhhhhhhhhhhhHHH--------------HHHHHHHHHhcCCe-E
Confidence            99999986542 22222 33333322   224789999999999976431              12233334444555 9


Q ss_pred             EEcccCCCCCHHHHHHHHHHHHHh
Q psy15714        175 LECSAKLNEGLDQVFIAAVRSAVK  198 (205)
Q Consensus       175 ~~~Sa~~~~~i~~~~~~i~~~~~~  198 (205)
                      +.+||++|+|++++++.|.+.+..
T Consensus       146 ~~iSA~tg~gid~L~~~i~~~l~~  169 (180)
T d1udxa2         146 LPVSALTGAGLPALKEALHALVRS  169 (180)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHhh
Confidence            999999999999999999887754

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.90  E-value=4.2e-23  Score=145.48  Aligned_cols=164  Identities=21%  Similarity=0.164  Sum_probs=110.3

Q ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccc-----c---ceeEEECCEEEEEEEEEcCCCcccccccccC
Q psy15714         20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDN-----Y---PDTITVDNKTYDVTLWDTAGQEDYERLRPMS   91 (205)
Q Consensus        20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~-----~---~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~   91 (205)
                      ..+.++|+++|.+++|||||++++++.........+....     .   ......++  ..+.++|++|+..|.......
T Consensus         2 ~~k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~   79 (179)
T d1wb1a4           2 DFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSA   79 (179)
T ss_dssp             CCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHH
T ss_pred             CCCCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCC--ccccccccccccccccchhhh
Confidence            3577899999999999999999999644322111111110     0   12233344  568889999999888877778


Q ss_pred             cCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHc--
Q psy15714         92 YPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKI--  169 (205)
Q Consensus        92 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  169 (205)
                      +..+|++++++|+.+.......  +....+...  ++|+++|+||+|+.......          ...+..+.+.+..  
T Consensus        80 l~~~d~~ilv~d~~~g~~~~~~--~~~~~~~~~--~~p~iiv~NKiD~~~~~~~~----------~~~~~~~~~~~~~~~  145 (179)
T d1wb1a4          80 ADIIDLALIVVDAKEGPKTQTG--EHMLILDHF--NIPIIVVITKSDNAGTEEIK----------RTEMIMKSILQSTHN  145 (179)
T ss_dssp             TTSCCEEEEEEETTTCSCHHHH--HHHHHHHHT--TCCBCEEEECTTSSCHHHHH----------HHHHHHHHHHHHSSS
T ss_pred             hhhccccccccccccccchhhh--hhhhhhhhc--CCcceeccccccccCHHHHH----------HHHHHHHHHHHHhhc
Confidence            8999999999999987554432  333445444  89999999999987653211          1112222333322  


Q ss_pred             -CCceEEEcccCCCCCHHHHHHHHHHHHHhh
Q psy15714        170 -KAAEYLECSAKLNEGLDQVFIAAVRSAVKK  199 (205)
Q Consensus       170 -~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  199 (205)
                       ...+++++||++|+|++++++.|.+.+-+.
T Consensus       146 ~~~~~iv~iSA~~g~gi~eL~~~I~~~l~~~  176 (179)
T d1wb1a4         146 LKNSSIIPISAKTGFGVDELKNLIITTLNNA  176 (179)
T ss_dssp             GGGCCEEECCTTTCTTHHHHHHHHHHHHHHS
T ss_pred             CCCCeEEEEEccCCcCHHHHHHHHHhcCCcc
Confidence             223589999999999999999999887653

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.89  E-value=1.1e-22  Score=144.06  Aligned_cols=162  Identities=19%  Similarity=0.118  Sum_probs=105.2

Q ss_pred             eeeEEEEECCCCCCHHHHHHHHhcCCC--CCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccc------------
Q psy15714         22 KALKVTTVGDGMVGKTCLLITHTENKF--PTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERL------------   87 (205)
Q Consensus        22 ~~~ki~v~G~~~~GKstli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~------------   87 (205)
                      ..+||+++|.+++|||||++++++...  ......+........+..++.  .+.++|+||.......            
T Consensus         7 ~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~~~d~~g~~~~~~~~~~~~~~~~~~~   84 (186)
T d1mkya2           7 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNYR   84 (186)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCCc--eeeeeccCCccccccccccccccchhHH
Confidence            469999999999999999999998764  233344443443445666774  5788899996432221            


Q ss_pred             cccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHH
Q psy15714         88 RPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRR  167 (205)
Q Consensus        88 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (205)
                      ....++.+|++++|+|+.........  .++..+...  +.|+++|+||+|+........        ....+...+...
T Consensus        85 ~~~~~~~~dvii~v~d~~~~~~~~~~--~~~~~~~~~--~~~~i~v~nK~D~~~~~~~~~--------~~~~~~~~~~~~  152 (186)
T d1mkya2          85 VVDSIEKADVVVIVLDATQGITRQDQ--RMAGLMERR--GRASVVVFNKWDLVVHREKRY--------DEFTKLFREKLY  152 (186)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHHHH--HHHHHHHHT--TCEEEEEEECGGGSTTGGGCH--------HHHHHHHHHHCG
T ss_pred             HHHHHhcCCEEEEeecccccchhhHH--HHHHHHHHc--CCceeeeccchhhhcchhhhh--------hhHHHHHHHHhc
Confidence            11235678999999999876554442  566666666  899999999999876542100        000111222222


Q ss_pred             HcCCceEEEcccCCCCCHHHHHHHHHHHHH
Q psy15714        168 KIKAAEYLECSAKLNEGLDQVFIAAVRSAV  197 (205)
Q Consensus       168 ~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~  197 (205)
                      ..+..+++++||++|.|+++++++|.+.+.
T Consensus       153 ~~~~~~i~~vSa~~g~gv~~L~~~i~~~~~  182 (186)
T d1mkya2         153 FIDYSPLIFTSADKGWNIDRMIDAMNLAYA  182 (186)
T ss_dssp             GGTTSCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred             ccCCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            344556999999999999999999966554

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.89  E-value=1e-22  Score=148.10  Aligned_cols=173  Identities=16%  Similarity=0.148  Sum_probs=121.5

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEE
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLL  100 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~  100 (205)
                      ++.+||+++|+.|||||||++++..+.+    .||++.. ...+.+++  +.+.+||++|+..++..|..+++.++++++
T Consensus         4 k~~~KilllG~~~vGKTsll~~~~~~~~----~pTiG~~-~~~~~~~~--~~~~~~D~~Gq~~~r~~w~~~~~~~~~ii~   76 (221)
T d1azta2           4 RATHRLLLLGAGESGKSTIVKQMRILHV----VLTSGIF-ETKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIF   76 (221)
T ss_dssp             HHSEEEEEECSTTSSHHHHHHHHHHHHC----CCCCSCE-EEEEEETT--EEEEEEECCCSTTTTTGGGGGCTTCSEEEE
T ss_pred             hhcCEEEEECCCCCCHHHHHHHHhcCCc----CCCCCeE-EEEEEECc--EEEEEEecCccceeccchhhhcccccceEE
Confidence            5678999999999999999999987765    4566633 23455666  779999999999999999999999999999


Q ss_pred             EEECCCc----------chHHHHHHHHHHHHhhhC-CCCCEEEEeeCcccccCchhhh---hh----hhhc---------
Q psy15714        101 CFSIGST----------SSYENILSKWYPELKHHC-PKVPIILVGTKADLRSENKTID---KK----KAAE---------  153 (205)
Q Consensus       101 v~d~~~~----------~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~---~~----~~~~---------  153 (205)
                      ++|.++.          ....+....|...+.... .++|++|++||+|+........   ..    +...         
T Consensus        77 v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~~k~~~~~~~~~~~f~~~~~~~~~~~~~~  156 (221)
T d1azta2          77 VVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATP  156 (221)
T ss_dssp             EEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHHHHCSSCHHHHCGGGGGCCCCTTCCC
T ss_pred             EEEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhhhhhccCcccHHHhCccccccCCcccccc
Confidence            9998853          334454546777776654 7899999999999965432111   00    0000         


Q ss_pred             --cccccHHHHHHH-----HHHc-------CCceEEEcccCCCCCHHHHHHHHHHHHHhhc
Q psy15714        154 --VDLVSTSQGKKM-----RRKI-------KAAEYLECSAKLNEGLDQVFIAAVRSAVKKQ  200 (205)
Q Consensus       154 --~~~~~~~~~~~~-----~~~~-------~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~  200 (205)
                        ......+++..+     .+..       .....+++||.++.+|+.+|..+.+.|+.+.
T Consensus       157 ~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~y~h~T~A~Dt~ni~~vf~~v~d~I~~~~  217 (221)
T d1azta2         157 EPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRMH  217 (221)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHHHHTSSCTTSCCEEEEECCTTCHHHHHHHHHTTHHHHHHHH
T ss_pred             cCCCchhHHHHHHHHHHHHHHHhccCCCCCCceeeeecceeccHHHHHHHHHHHHHHHHHH
Confidence              001112222222     1111       1233568999999999999999988887653

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.88  E-value=5.6e-22  Score=144.65  Aligned_cols=172  Identities=15%  Similarity=0.143  Sum_probs=108.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-----------------ceeEEECCEEEEEEEEEcCCCccccc
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-----------------PDTITVDNKTYDVTLWDTAGQEDYER   86 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-----------------~~~~~~~~~~~~~~i~D~~g~~~~~~   86 (205)
                      ..|+|+|.+++|||||++++++...............                 .....+.....++.++|+||+..|..
T Consensus         6 p~IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f~~   85 (227)
T d1g7sa4           6 PIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTT   85 (227)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTT
T ss_pred             CEEEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccceecccc
Confidence            3499999999999999999986432111110000000                 00111222335688999999999988


Q ss_pred             ccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhh---hccccc-----c
Q psy15714         87 LRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKA---AEVDLV-----S  158 (205)
Q Consensus        87 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~---~~~~~~-----~  158 (205)
                      .....+..+|++|+|+|+.+.-.....  +.+..+...  ++|+++++||+|+............   ......     .
T Consensus        86 ~~~~~~~~~D~~ilVvda~~g~~~~~~--~~~~~~~~~--~~p~iivlNK~D~~~~~~~~~~~~~~~~~~~~~~~v~~~~  161 (227)
T d1g7sa4          86 LRKRGGALADLAILIVDINEGFKPQTQ--EALNILRMY--RTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKL  161 (227)
T ss_dssp             SBCSSSBSCSEEEEEEETTTCCCHHHH--HHHHHHHHT--TCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHH
T ss_pred             cchhcccccceEEEEEecccCcccchh--HHHHHhhcC--CCeEEEEEECccCCCchhhhhhHHHHHhhhcchHHHHHHH
Confidence            888889999999999999876554443  555666666  8999999999999765432111100   000000     0


Q ss_pred             HHH----HHHHHHH-------------cCCceEEEcccCCCCCHHHHHHHHHHHHHhh
Q psy15714        159 TSQ----GKKMRRK-------------IKAAEYLECSAKLNEGLDQVFIAAVRSAVKK  199 (205)
Q Consensus       159 ~~~----~~~~~~~-------------~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  199 (205)
                      .+.    ...+...             ....+++.+||.+|.|++++++.+...+.+.
T Consensus       162 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~~~~  219 (227)
T d1g7sa4         162 DTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQY  219 (227)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHHHHH
Confidence            001    1111111             1224589999999999999999988776553

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.88  E-value=2.7e-22  Score=138.67  Aligned_cols=148  Identities=21%  Similarity=0.178  Sum_probs=100.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCC--CCCcCccccccceeEEECCEEEEEEEEEcCCCcccc--c-------ccccCc
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTENKFP--TDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYE--R-------LRPMSY   92 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~--~-------~~~~~~   92 (205)
                      +||+++|.+++|||||++++++.+..  .....+........+...+  ..+.+||+||.....  .       .....+
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~   78 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQEI   78 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEeCC--eeEEeccccccccCCccHHHHHHHHHHHHHH
Confidence            69999999999999999999976532  3333333333344566666  568899999942211  0       011135


Q ss_pred             CCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCc
Q psy15714         93 PNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAA  172 (205)
Q Consensus        93 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (205)
                      ..+|++++|+|++++.......  +...+    ...|+++++||.|+....              ..++.....  ....
T Consensus        79 ~~ad~ii~v~d~~~~~~~~~~~--~~~~~----~~~~~i~~~~k~d~~~~~--------------~~~~~~~~~--~~~~  136 (160)
T d1xzpa2          79 EKADIVLFVLDASSPLDEEDRK--ILERI----KNKRYLVVINKVDVVEKI--------------NEEEIKNKL--GTDR  136 (160)
T ss_dssp             HHCSEEEEEEETTSCCCHHHHH--HHHHH----TTSSEEEEEEECSSCCCC--------------CHHHHHHHH--TCST
T ss_pred             HhCCEEEEEEeCCCCcchhhhh--hhhhc----ccccceeeeeeccccchh--------------hhHHHHHHh--CCCC
Confidence            6799999999999987655542  22222    378999999999987642              222222221  1223


Q ss_pred             eEEEcccCCCCCHHHHHHHHHHH
Q psy15714        173 EYLECSAKLNEGLDQVFIAAVRS  195 (205)
Q Consensus       173 ~~~~~Sa~~~~~i~~~~~~i~~~  195 (205)
                      +++++||++|+||++++++|.+.
T Consensus       137 ~~~~vSA~~g~gi~~L~~~I~ke  159 (160)
T d1xzpa2         137 HMVKISALKGEGLEKLEESIYRE  159 (160)
T ss_dssp             TEEEEEGGGTCCHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHhc
Confidence            48999999999999999988763

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.87  E-value=6.1e-22  Score=142.55  Aligned_cols=120  Identities=16%  Similarity=0.169  Sum_probs=87.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCccccc-ccccCcCCCcEEEEEEE
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYER-LRPMSYPNTDCFLLCFS  103 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-~~~~~~~~~~~~i~v~d  103 (205)
                      +|+++|++++|||||+++|.++.+...+ ++.+.........++..+.+.+||++|++.++. .+..++..++++++|+|
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~D   80 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQYRDTQ-TSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVD   80 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCBC-CCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCccc-CCeeEEEEEEEEeeeeeeeeeeeeccccccccchhhhhhhhhccccceEEE
Confidence            6899999999999999999999886543 444443322222244567899999999998864 56778899999999999


Q ss_pred             CCCcchH-HHHHHHHHHHHhhh---CCCCCEEEEeeCcccccCchh
Q psy15714        104 IGSTSSY-ENILSKWYPELKHH---CPKVPIILVGTKADLRSENKT  145 (205)
Q Consensus       104 ~~~~~s~-~~~~~~~~~~~~~~---~~~~p~ivv~nK~Dl~~~~~~  145 (205)
                      +++..++ .+....|...+...   ..++|++||+||+|+....+.
T Consensus        81 ~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a~~~  126 (207)
T d2fh5b1          81 SAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSA  126 (207)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCH
T ss_pred             cccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCCCCH
Confidence            9997664 44443344444322   257899999999999865443

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.86  E-value=3e-21  Score=137.64  Aligned_cols=156  Identities=15%  Similarity=0.147  Sum_probs=94.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccc-eeEEECCEEEEEEEEEcCCCccc-------------ccccc
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYP-DTITVDNKTYDVTLWDTAGQEDY-------------ERLRP   89 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~-------------~~~~~   89 (205)
                      .+|+|+|.+|||||||++++++.+.............. .......   .+.+.|++|....             .....
T Consensus        24 ~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  100 (195)
T d1svia_          24 PEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMIETYI  100 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeecccccccc---cceEEEEEeeccccccccccchhhhHHhhhh
Confidence            48999999999999999999976532222222222211 1222222   2444566652111             11122


Q ss_pred             cCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHc
Q psy15714         90 MSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKI  169 (205)
Q Consensus        90 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (205)
                      ..+..++++++++|++++..-...  +++..+...  ++|+++|+||+|+......          .-..+..++.....
T Consensus       101 ~~~~~~~~vi~viD~~~~~~~~~~--~~~~~l~~~--~~piivv~NK~D~~~~~~~----------~~~~~~~~~~l~~~  166 (195)
T d1svia_         101 TTREELKAVVQIVDLRHAPSNDDV--QMYEFLKYY--GIPVIVIATKADKIPKGKW----------DKHAKVVRQTLNID  166 (195)
T ss_dssp             HHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHHT--TCCEEEEEECGGGSCGGGH----------HHHHHHHHHHHTCC
T ss_pred             ccccchhhhhhhhhcccccccccc--ccccccccc--cCcceechhhccccCHHHH----------HHHHHHHHHHhccc
Confidence            345678999999999876543332  667777766  8999999999998654311          00111122222222


Q ss_pred             CCceEEEcccCCCCCHHHHHHHHHHHH
Q psy15714        170 KAAEYLECSAKLNEGLDQVFIAAVRSA  196 (205)
Q Consensus       170 ~~~~~~~~Sa~~~~~i~~~~~~i~~~~  196 (205)
                      ...+++.+||++|+|+++++++|.+.+
T Consensus       167 ~~~~~~~~SA~~~~gi~el~~~i~~~l  193 (195)
T d1svia_         167 PEDELILFSSETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             TTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCCCHHHHHHHHHHHh
Confidence            444589999999999999999998775

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.86  E-value=1.4e-21  Score=137.93  Aligned_cols=151  Identities=17%  Similarity=0.150  Sum_probs=95.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCcC-ccccccceeEEECCEEEEEEEEEcCCCccc---------------cccc
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENKFPTDYVP-TVFDNYPDTITVDNKTYDVTLWDTAGQEDY---------------ERLR   88 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~---------------~~~~   88 (205)
                      .|+++|.+|+|||||+|++++.+......+ ++..  ...+...+    +.+||+||....               ....
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~~~~~~~g~T~~--~~~~~~~~----~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~   75 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRK--IIEIEWKN----HKIIDMPGFGFMMGLPKEVQERIKDEIVHFI   75 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTS--CEEEEETT----EEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCCCCEeec--cccccccc----ceecccCCceeccccccccccccchhhhhhh
Confidence            589999999999999999998765322221 2111  12233333    678999994211               1112


Q ss_pred             ccCcCCCcEEEEEEECCCcchHHHH---------HHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccH
Q psy15714         89 PMSYPNTDCFLLCFSIGSTSSYENI---------LSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVST  159 (205)
Q Consensus        89 ~~~~~~~~~~i~v~d~~~~~s~~~~---------~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~  159 (205)
                      ...++.+|++++|+|+.........         ..+++..+...  ++|+++|+||+|+......              
T Consensus        76 ~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~--~~p~iiv~NK~D~~~~~~~--------------  139 (184)
T d2cxxa1          76 EDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLREL--DIPTIVAVNKLDKIKNVQE--------------  139 (184)
T ss_dssp             HHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHT--TCCEEEEEECGGGCSCHHH--------------
T ss_pred             hhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHHc--CCCEEEEEeeeehhhhHHH--------------
Confidence            2346789999999998754222111         11334444444  8999999999998754311              


Q ss_pred             HHHHHHHHHcC------CceEEEcccCCCCCHHHHHHHHHHHHHh
Q psy15714        160 SQGKKMRRKIK------AAEYLECSAKLNEGLDQVFIAAVRSAVK  198 (205)
Q Consensus       160 ~~~~~~~~~~~------~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  198 (205)
                       ....+.....      ...++++||++|+|+++++++|.+.+.+
T Consensus       140 -~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~L~~~i~~~l~e  183 (184)
T d2cxxa1         140 -VINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRE  183 (184)
T ss_dssp             -HHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHhcccccccCCeEEEEECCCCCCHHHHHHHHHHHccC
Confidence             1111111111      1127899999999999999999987764

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.86  E-value=3e-21  Score=137.65  Aligned_cols=164  Identities=17%  Similarity=0.055  Sum_probs=106.3

Q ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcC-ccccc----cc--------------------eeEEECCEEEEEE
Q psy15714         20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVP-TVFDN----YP--------------------DTITVDNKTYDVT   74 (205)
Q Consensus        20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~-t~~~~----~~--------------------~~~~~~~~~~~~~   74 (205)
                      .+..++|+++|..++|||||++++++......... ..+..    +.                    ...........+.
T Consensus         2 ~~~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (195)
T d1kk1a3           2 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS   81 (195)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred             CCCcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEe
Confidence            35678999999999999999999986432111000 00000    00                    0000112346789


Q ss_pred             EEEcCCCcccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCC-CEEEEeeCcccccCchhhhhhhhhc
Q psy15714         75 LWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKV-PIILVGTKADLRSENKTIDKKKAAE  153 (205)
Q Consensus        75 i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-p~ivv~nK~Dl~~~~~~~~~~~~~~  153 (205)
                      ++|+||+..|.......+..+|++++|+|+.+........ +.+..+...  ++ +++++.||+|+.+....        
T Consensus        82 ~iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~-e~~~~~~~~--~~~~iiv~inK~D~~d~~~~--------  150 (195)
T d1kk1a3          82 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTR-EHLMALQII--GQKNIIIAQNKIELVDKEKA--------  150 (195)
T ss_dssp             EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHH-HHHHHHHHH--TCCCEEEEEECGGGSCHHHH--------
T ss_pred             eeccchhhhhhHHhhcccccccccccccchhhhhhhhhhH-HHHHHHHHh--cCccceeeeecccchhhHHH--------
Confidence            9999999999888777888999999999998864222222 333444444  44 47889999998765321        


Q ss_pred             cccccHHHHHHHHHHcC--CceEEEcccCCCCCHHHHHHHHHHHH
Q psy15714        154 VDLVSTSQGKKMRRKIK--AAEYLECSAKLNEGLDQVFIAAVRSA  196 (205)
Q Consensus       154 ~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~i~~~~  196 (205)
                        ....++..++.+...  ..+++++||++|+|+++|++.|.+.+
T Consensus       151 --~~~~~~~~~~~~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~i  193 (195)
T d1kk1a3         151 --LENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFI  193 (195)
T ss_dssp             --HHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             --HHHHHHHHHHhccccCCCCeEEEEECCCCCCHHHHHHHHHHHC
Confidence              111233344444432  23589999999999999999887643

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.84  E-value=3.5e-20  Score=133.03  Aligned_cols=163  Identities=15%  Similarity=0.081  Sum_probs=102.7

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCC-----CcCcccccc-cee------------------------EEECCEE
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTENKFPTD-----YVPTVFDNY-PDT------------------------ITVDNKT   70 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~-----~~~t~~~~~-~~~------------------------~~~~~~~   70 (205)
                      +..++|+++|..++|||||++++++..-...     ...+..... ...                        .......
T Consensus         6 ~p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (205)
T d2qn6a3           6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFL   85 (205)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEE
T ss_pred             CCCeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccccce
Confidence            3458999999999999999999985321100     000000000 000                        0001223


Q ss_pred             EEEEEEEcCCCcccccccccCcCCCcEEEEEEECCCcc-hHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhh
Q psy15714         71 YDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTS-SYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKK  149 (205)
Q Consensus        71 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~  149 (205)
                      ..+.+.|+|||..|-......+..+|++|+|+|+.+.- .-.. . +.+..+... .-.|++|++||+|+........  
T Consensus        86 r~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t-~-e~~~~~~~~-~i~~iIV~vNK~Dl~~~~~~~~--  160 (205)
T d2qn6a3          86 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQT-R-EHFVALGII-GVKNLIIVQNKVDVVSKEEALS--  160 (205)
T ss_dssp             EEEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHH-H-HHHHHHHHT-TCCCEEEEEECGGGSCHHHHHH--
T ss_pred             EEEEEeccchHHHHHhhhhcceeccccccccccccccccchhH-H-HHHHHHHHc-CCceeeeccccCCCccchHHHH--
Confidence            56899999999999877777788999999999998763 2222 2 333344443 1348899999999976542211  


Q ss_pred             hhhccccccHHHHHHHHHHcC--CceEEEcccCCCCCHHHHHHHHHHHH
Q psy15714        150 KAAEVDLVSTSQGKKMRRKIK--AAEYLECSAKLNEGLDQVFIAAVRSA  196 (205)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~i~~~~  196 (205)
                              ...+...+.....  ..+++++||++|.||+++++.|...+
T Consensus       161 --------~~~~~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~i  201 (205)
T d2qn6a3         161 --------QYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYI  201 (205)
T ss_dssp             --------HHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             --------HHHHHHHHhccccCCCCeEEEEeCCCCCChHHHHHHHHhhC
Confidence                    1122333333322  24589999999999999999887654

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.83  E-value=2.9e-21  Score=136.58  Aligned_cols=156  Identities=19%  Similarity=0.195  Sum_probs=93.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCC-CCCcCccccccceeEEE-CCEEEEEEEEEcCCCcccccc----cc---cCcCCC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENKFP-TDYVPTVFDNYPDTITV-DNKTYDVTLWDTAGQEDYERL----RP---MSYPNT   95 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~~~-~~~~~t~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~----~~---~~~~~~   95 (205)
                      +|+++|.+|||||||+|++++.... ..+.+++.........+ ++  ..+.+||+||.......    ..   ..+..+
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~   80 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG--RSFVMADLPGLIEGAHQGVGLGHQFLRHIERT   80 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSS--CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred             eEEEECCCCCCHHHHHHHHhCCCCceecCCCceEeeeeceeEecCC--cEEEEecCCCcccCchHHHHHHHHHHHHHHHh
Confidence            6899999999999999999876542 22222222221222222 33  35789999995332211    11   123457


Q ss_pred             cEEEEEEECCCcchHH--HHHHHHHHHHhh---hCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHc-
Q psy15714         96 DCFLLCFSIGSTSSYE--NILSKWYPELKH---HCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKI-  169 (205)
Q Consensus        96 ~~~i~v~d~~~~~s~~--~~~~~~~~~~~~---~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  169 (205)
                      +.++++++........  .....+......   ...++|+++|+||+|+....                +..+.+.+.+ 
T Consensus        81 ~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~~----------------~~~~~~~~~~~  144 (185)
T d1lnza2          81 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA----------------ENLEAFKEKLT  144 (185)
T ss_dssp             CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH----------------HHHHHHHHHCC
T ss_pred             hhhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhHH----------------HHHHHHHHHhc
Confidence            8888888765443221  111111111111   11478999999999987532                1222333333 


Q ss_pred             CCceEEEcccCCCCCHHHHHHHHHHHHHh
Q psy15714        170 KAAEYLECSAKLNEGLDQVFIAAVRSAVK  198 (205)
Q Consensus       170 ~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  198 (205)
                      ...+++.+||++|+|+++++++|.+.+.+
T Consensus       145 ~~~~v~~iSA~~g~Gi~~L~~~i~~~L~~  173 (185)
T d1lnza2         145 DDYPVFPISAVTREGLRELLFEVANQLEN  173 (185)
T ss_dssp             SCCCBCCCSSCCSSTTHHHHHHHHHHHTS
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHhhhh
Confidence            22348999999999999999999888754

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=1.9e-19  Score=126.28  Aligned_cols=158  Identities=16%  Similarity=0.133  Sum_probs=104.6

Q ss_pred             eeeEEEEECCCCCCHHHHHHHHhcCCCC--CCCcCccccccceeEEECCEEEEEEEEEcCCCcc---------ccccccc
Q psy15714         22 KALKVTTVGDGMVGKTCLLITHTENKFP--TDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQED---------YERLRPM   90 (205)
Q Consensus        22 ~~~ki~v~G~~~~GKstli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~---------~~~~~~~   90 (205)
                      ..-.|+++|.+|+|||||+|++++.+..  .....+...........+.  ..+..||.+|...         +......
T Consensus         4 ~~~~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (179)
T d1egaa1           4 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLHMEEKRAINRLMNKAASS   81 (179)
T ss_dssp             EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCCHHHHHHHHHHHTCCTTS
T ss_pred             cccEEEEECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeecCC--ceeEeecCCCceecchhhhhhhhhhcccc
Confidence            3456999999999999999999987643  1112222222222333444  3466678877422         1222333


Q ss_pred             CcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcC
Q psy15714         91 SYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIK  170 (205)
Q Consensus        91 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (205)
                      ....+++++++.|..+......   .+...+.+.  ..|.++++||.|.....            .......+.+...++
T Consensus        82 ~~~~~~~~l~~~d~~~~~~~~~---~~~~~l~~~--~~~~i~v~~k~d~~~~~------------~~~~~~~~~~~~~~~  144 (179)
T d1egaa1          82 SIGDVELVIFVVEGTRWTPDDE---MVLNKLREG--KAPVILAVNKVDNVQEK------------ADLLPHLQFLASQMN  144 (179)
T ss_dssp             CCCCEEEEEEEEETTCCCHHHH---HHHHHHHSS--SSCEEEEEESTTTCCCH------------HHHHHHHHHHHTTSC
T ss_pred             chhhcceeEEEEecCccchhHH---HHHHHhhhc--cCceeeeeeeeeccchh------------hhhhhHhhhhhhhcC
Confidence            4567888888888776443322   333444443  78999999999987654            223445566777788


Q ss_pred             CceEEEcccCCCCCHHHHHHHHHHHHHh
Q psy15714        171 AAEYLECSAKLNEGLDQVFIAAVRSAVK  198 (205)
Q Consensus       171 ~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  198 (205)
                      ..+++++||++|+|++++++.|.+.+.+
T Consensus       145 ~~~~~~vSA~~g~gi~~L~~~i~~~lpe  172 (179)
T d1egaa1         145 FLDIVPISAETGLNVDTIAAIVRKHLPE  172 (179)
T ss_dssp             CSEEEECCTTTTTTHHHHHHHHHTTCCB
T ss_pred             CCCEEEEeCcCCCCHHHHHHHHHHhCCC
Confidence            7779999999999999999999876543

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.79  E-value=2.4e-19  Score=127.27  Aligned_cols=162  Identities=13%  Similarity=0.067  Sum_probs=106.4

Q ss_pred             eeeEEEEECCCCCCHHHHHHHHhcC-----CCCCC------CcCcc---cccc-ceeEEECCEEEEEEEEEcCCCccccc
Q psy15714         22 KALKVTTVGDGMVGKTCLLITHTEN-----KFPTD------YVPTV---FDNY-PDTITVDNKTYDVTLWDTAGQEDYER   86 (205)
Q Consensus        22 ~~~ki~v~G~~~~GKstli~~~~~~-----~~~~~------~~~t~---~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~   86 (205)
                      ..++|+++|..++|||||++++...     .....      ..+..   +... .....+......+.++|+||+..|..
T Consensus         2 p~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~~~~~~iDtPGh~~f~~   81 (196)
T d1d2ea3           2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK   81 (196)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred             CCcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEeceeeEEeecCcchHHHHH
Confidence            3589999999999999999998741     10000      00000   0000 11223333345688899999999988


Q ss_pred             ccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHH
Q psy15714         87 LRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMR  166 (205)
Q Consensus        87 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (205)
                      .....+..+|++++|+|+.+...-+..  +.+..+... ...|+||+.||+|+.......         ..-..+.+.+.
T Consensus        82 ~~~~~~~~aD~allVVda~~G~~~QT~--~~~~~a~~~-~~~~iIv~iNK~D~~~~~~~~---------~~i~~~i~~~l  149 (196)
T d1d2ea3          82 NMITGTAPLDGCILVVAANDGPMPQTR--EHLLLARQI-GVEHVVVYVNKADAVQDSEMV---------ELVELEIRELL  149 (196)
T ss_dssp             HHHHTSSCCSEEEEEEETTTCSCHHHH--HHHHHHHHT-TCCCEEEEEECGGGCSCHHHH---------HHHHHHHHHHH
T ss_pred             HHHHHHhhcCeEEEEEEcCCCCchhHH--HHHHHHHHh-cCCcEEEEEecccccccHHHH---------HHHHHHHHHHH
Confidence            777788999999999999987654443  344444443 145799999999987543110         11233455555


Q ss_pred             HHcCC----ceEEEcccCCC----------CCHHHHHHHHHHH
Q psy15714        167 RKIKA----AEYLECSAKLN----------EGLDQVFIAAVRS  195 (205)
Q Consensus       167 ~~~~~----~~~~~~Sa~~~----------~~i~~~~~~i~~~  195 (205)
                      ...+.    .+++.+||++|          +++.++++.+.+.
T Consensus       150 ~~~~~~~~~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~  192 (196)
T d1d2ea3         150 TEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTY  192 (196)
T ss_dssp             HHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHH
T ss_pred             HHhCCCcccCEEEEEEccccccccCcccccCCHHHHHHHHHhh
Confidence            55544    45899999998          5889998877654

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.77  E-value=8.4e-18  Score=121.39  Aligned_cols=157  Identities=15%  Similarity=0.072  Sum_probs=101.1

Q ss_pred             cccceeeEEEEECCCCCCHHHHHHHHhc--CCCCCCCc----------Ccc-------------------cccc-ceeEE
Q psy15714         18 KSVHKALKVTTVGDGMVGKTCLLITHTE--NKFPTDYV----------PTV-------------------FDNY-PDTIT   65 (205)
Q Consensus        18 ~~~~~~~ki~v~G~~~~GKstli~~~~~--~~~~~~~~----------~t~-------------------~~~~-~~~~~   65 (205)
                      ...+..+||+++|..++|||||+.+++.  +.+.....          .+.                   +... .....
T Consensus         4 ~~~~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~   83 (222)
T d1zunb3           4 HERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRY   83 (222)
T ss_dssp             TTSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEE
T ss_pred             cccCCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEE
Confidence            3456789999999999999999999863  22111000          000                   0000 01111


Q ss_pred             ECCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCC-EEEEeeCcccccCch
Q psy15714         66 VDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVP-IILVGTKADLRSENK  144 (205)
Q Consensus        66 ~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~  144 (205)
                      +......+.+.|+|||..|-......+..+|++|+|+|+.+...-+..  +.+..+...  ++| ++++.||+|+.....
T Consensus        84 ~~~~~~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt~--e~~~~~~~~--gv~~iiv~vNK~D~~~~~~  159 (222)
T d1zunb3          84 FSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTR--RHSYIASLL--GIKHIVVAINKMDLNGFDE  159 (222)
T ss_dssp             EECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHH--HHHHHHHHT--TCCEEEEEEECTTTTTSCH
T ss_pred             EeccceEEEEEeccchhhhhhhhccccccCceEEEEeccccCcccchH--HHHHHHHHc--CCCEEEEEEEccccccccc
Confidence            112235688999999999988888889999999999999887555443  344444444  666 789999999976442


Q ss_pred             hhhhhhhhccccccHHHHHHHHHHcCC----ceEEEcccCCCCCHH
Q psy15714        145 TIDKKKAAEVDLVSTSQGKKMRRKIKA----AEYLECSAKLNEGLD  186 (205)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~  186 (205)
                      ...        ....++...+.+..+.    .+++++||.+|+|+.
T Consensus       160 ~~~--------~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~  197 (222)
T d1zunb3         160 RVF--------ESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVV  197 (222)
T ss_dssp             HHH--------HHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTS
T ss_pred             eeh--------hhhHHHHhhhhHhhccCCCceEEEEEEcccCccCC
Confidence            110        1223344556655543    347899999999883

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.74  E-value=1.2e-17  Score=117.58  Aligned_cols=166  Identities=13%  Similarity=-0.007  Sum_probs=90.4

Q ss_pred             cccccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCCccc----------
Q psy15714         16 KSKSVHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQEDY----------   84 (205)
Q Consensus        16 ~~~~~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~----------   84 (205)
                      ...+....+||+++|.+++|||||+|++.+.+............. ............+..++.++....          
T Consensus         9 ~~~p~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (188)
T d1puia_           9 RHLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRA   88 (188)
T ss_dssp             GGSSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHHHHHH
T ss_pred             hHCCCccCCEEEEECCCCCCHHHHHHHHhCCCceEeecccccceeeccceecccccceeeeecccccchhhhhhhhhhhh
Confidence            344456789999999999999999999998765332222222111 111222122222222222221111          


Q ss_pred             ccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHH
Q psy15714         85 ERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKK  164 (205)
Q Consensus        85 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  164 (205)
                      .............++.+.+..........  .++..+...  ..++++++||.|+.......          ...++.++
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~v~~k~D~~~~~~~~----------~~~~~~~~  154 (188)
T d1puia_          89 LGEYLEKRQSLQGLVVLMDIRHPLKDLDQ--QMIEWAVDS--NIAVLVLLTKADKLASGARK----------AQLNMVRE  154 (188)
T ss_dssp             HHHHHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHHT--TCCEEEEEECGGGSCHHHHH----------HHHHHHHH
T ss_pred             hhhhhhhhhheeEEEEeecccccchhHHH--HHHHHhhhc--cccccchhhhhhccCHHHHH----------HHHHHHHH
Confidence            01111223455666677776665544443  455555555  78999999999987653211          11122222


Q ss_pred             HHHH-cCCceEEEcccCCCCCHHHHHHHHHHH
Q psy15714        165 MRRK-IKAAEYLECSAKLNEGLDQVFIAAVRS  195 (205)
Q Consensus       165 ~~~~-~~~~~~~~~Sa~~~~~i~~~~~~i~~~  195 (205)
                      ..+. .+..+++.+||++|.|++++++.|.+.
T Consensus       155 ~l~~~~~~~~~i~vSA~~g~Gid~L~~~i~~~  186 (188)
T d1puia_         155 AVLAFNGDVQVETFSSLKKQGVDKLRQKLDTW  186 (188)
T ss_dssp             HHGGGCSCEEEEECBTTTTBSHHHHHHHHHHH
T ss_pred             HHHhhCCCCcEEEEeCCCCCCHHHHHHHHHHH
Confidence            2222 334568999999999999999988654

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.73  E-value=1.4e-17  Score=118.94  Aligned_cols=117  Identities=19%  Similarity=0.171  Sum_probs=80.8

Q ss_pred             eeeEEEEECCCCCCHHHHHHHHhcC--------CCCC----CCcCcc---cccc-ceeEEECCEEEEEEEEEcCCCcccc
Q psy15714         22 KALKVTTVGDGMVGKTCLLITHTEN--------KFPT----DYVPTV---FDNY-PDTITVDNKTYDVTLWDTAGQEDYE   85 (205)
Q Consensus        22 ~~~ki~v~G~~~~GKstli~~~~~~--------~~~~----~~~~t~---~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~   85 (205)
                      ..++|+++|.+++|||||+++++..        ....    .+.+..   +... .....+.....++.|+|+||+..|-
T Consensus         2 ~~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~~~i~iiDtPGh~df~   81 (204)
T d2c78a3           2 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYI   81 (204)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGGH
T ss_pred             CCeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCCeEEEEEeCCCchhhH
Confidence            4589999999999999999998631        1110    000000   1111 1112222333568889999999998


Q ss_pred             cccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCC-EEEEeeCcccccC
Q psy15714         86 RLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVP-IILVGTKADLRSE  142 (205)
Q Consensus        86 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~  142 (205)
                      ......+..+|++|+|+|+.+....+..  +.+..+...  ++| ++|++||+|+.+.
T Consensus        82 ~~~~~~~~~aD~avlVvda~~Gv~~qt~--~~~~~~~~~--gi~~iiv~iNK~D~~~~  135 (204)
T d2c78a3          82 KNMITGAAQMDGAILVVSAADGPMPQTR--EHILLARQV--GVPYIVVFMNKVDMVDD  135 (204)
T ss_dssp             HHHHHHHTTCSSEEEEEETTTCCCHHHH--HHHHHHHHT--TCCCEEEEEECGGGCCC
T ss_pred             HHHHHHHHHCCEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCeEEEEEEecccCCC
Confidence            8877889999999999999988776654  445555555  776 7788999998653

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.71  E-value=2e-17  Score=118.56  Aligned_cols=116  Identities=16%  Similarity=0.162  Sum_probs=79.6

Q ss_pred             eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCccccccccc----CcCCCcE
Q psy15714         22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPM----SYPNTDC   97 (205)
Q Consensus        22 ~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~----~~~~~~~   97 (205)
                      .+.+|+++|+++||||||+++|.++++.+.    +... .....+......+.+||+||+..++..+..    ....++.
T Consensus         2 ~~p~V~lvG~~n~GKTSLln~l~~~~~~~~----tt~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~~   76 (209)
T d1nrjb_           2 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPT----VVSQ-EPLSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKG   76 (209)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHSSCCCB----CCCS-SCEEETTGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCe----EEec-ceEEEEEeCCeEEEEEecccccchhhHHHHHHHHHhhhccc
Confidence            356899999999999999999999887532    1111 112223333456889999999877655443    3455688


Q ss_pred             EEEEEECCC-cchHHHHHHHHH----HHHhhhC-CCCCEEEEeeCcccccCc
Q psy15714         98 FLLCFSIGS-TSSYENILSKWY----PELKHHC-PKVPIILVGTKADLRSEN  143 (205)
Q Consensus        98 ~i~v~d~~~-~~s~~~~~~~~~----~~~~~~~-~~~p~ivv~nK~Dl~~~~  143 (205)
                      +++++|+.+ ..++.... .|+    ..+.... .++|+++|+||+|+....
T Consensus        77 ~i~~vd~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~~  127 (209)
T d1nrjb_          77 LIFMVDSTVDPKKLTTTA-EFLVDILSITESSCENGIDILIACNKSELFTAR  127 (209)
T ss_dssp             EEEEEETTSCTTCCHHHH-HHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred             cceEEEEecccccHHHHH-HHHHHHHHHHHHHHhccCCeEEEEEeecccccC
Confidence            899998764 45555554 333    3333333 689999999999997654

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.68  E-value=1.1e-15  Score=112.90  Aligned_cols=114  Identities=16%  Similarity=0.135  Sum_probs=81.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhc--CCCCC-----------CCcCcc---cccc---ceeEEECCEEEEEEEEEcCCCcccc
Q psy15714         25 KVTTVGDGMVGKTCLLITHTE--NKFPT-----------DYVPTV---FDNY---PDTITVDNKTYDVTLWDTAGQEDYE   85 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~--~~~~~-----------~~~~t~---~~~~---~~~~~~~~~~~~~~i~D~~g~~~~~   85 (205)
                      +|+++|+.++|||||+.+++.  +....           .+.+..   +...   ...+..++  .+++|+||||+..|.
T Consensus         8 ni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~--~~~n~iDtPG~~dF~   85 (276)
T d2bv3a2           8 NIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKD--HRINIIDAPGHVDFT   85 (276)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETT--EEEEEECCCSSSSCS
T ss_pred             EEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCC--eEEEEecCCchhhhH
Confidence            699999999999999988863  22111           001000   0001   12233445  568899999999999


Q ss_pred             cccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCch
Q psy15714         86 RLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENK  144 (205)
Q Consensus        86 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~  144 (205)
                      ......++.+|++|+|+|+.+.-...... .| ....++  ++|.++++||+|....+.
T Consensus        86 ~e~~~~l~~~D~avlVvda~~Gv~~~T~~-~w-~~a~~~--~lP~i~fINKmDr~~ad~  140 (276)
T d2bv3a2          86 IEVERSMRVLDGAIVVFDSSQGVEPQSET-VW-RQAEKY--KVPRIAFANKMDKTGADL  140 (276)
T ss_dssp             TTHHHHHHHCCEEEEEEETTTSSCHHHHH-HH-HHHHTT--TCCEEEEEECTTSTTCCH
T ss_pred             HHHHHHHHhhhheEEeccccCCcchhHHH-HH-HHHHHc--CCCEEEEEeccccccccc
Confidence            88888899999999999999987766653 44 555566  899999999999865433

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.67  E-value=8.2e-16  Score=113.40  Aligned_cols=110  Identities=20%  Similarity=0.158  Sum_probs=78.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhc--CCCCC------C-----CcCcc---cccc-c--eeEEECCEEEEEEEEEcCCCcccc
Q psy15714         25 KVTTVGDGMVGKTCLLITHTE--NKFPT------D-----YVPTV---FDNY-P--DTITVDNKTYDVTLWDTAGQEDYE   85 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~--~~~~~------~-----~~~t~---~~~~-~--~~~~~~~~~~~~~i~D~~g~~~~~   85 (205)
                      +|+++|+.++|||||+.++..  +....      .     +.+..   +... .  ..+..++  .++.++||||+.+|.
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~--~~~n~iDtPGh~dF~   81 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRG--HRVFLLDAPGYGDFV   81 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETT--EEEEEEECCCSGGGH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccc--cceeEEccCchhhhh
Confidence            589999999999999998852  21110      0     00000   0011 1  1233445  568899999999999


Q ss_pred             cccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccc
Q psy15714         86 RLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLR  140 (205)
Q Consensus        86 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  140 (205)
                      ......++.+|++|+|+|+.+.-......  ......+.  ++|.++++||+|..
T Consensus        82 ~e~~~al~~~D~avlvvda~~Gv~~~t~~--~~~~~~~~--~~p~~i~iNk~D~~  132 (267)
T d2dy1a2          82 GEIRGALEAADAALVAVSAEAGVQVGTER--AWTVAERL--GLPRMVVVTKLDKG  132 (267)
T ss_dssp             HHHHHHHHHCSEEEEEEETTTCSCHHHHH--HHHHHHHT--TCCEEEEEECGGGC
T ss_pred             hhhhhhhcccCceEEEeeccCCccchhHH--HHHhhhhc--cccccccccccccc
Confidence            88888899999999999999887766653  44555566  89999999999974

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.64  E-value=6.7e-16  Score=113.00  Aligned_cols=165  Identities=12%  Similarity=0.054  Sum_probs=86.1

Q ss_pred             ccccceeeEEEEECCCCCCHHHHHHHHhc--CCCCC----------------------CCcCcccccc-ce-----eEEE
Q psy15714         17 SKSVHKALKVTTVGDGMVGKTCLLITHTE--NKFPT----------------------DYVPTVFDNY-PD-----TITV   66 (205)
Q Consensus        17 ~~~~~~~~ki~v~G~~~~GKstli~~~~~--~~~~~----------------------~~~~t~~~~~-~~-----~~~~   66 (205)
                      ....+..++|+++|..++|||||+.+++.  +.+..                      .......... ..     ...+
T Consensus        18 ~~~~k~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~   97 (245)
T d1r5ba3          18 DMYGKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYF   97 (245)
T ss_dssp             HHSCCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEE
T ss_pred             HhcCCCceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCcccccccccc
Confidence            33456678999999999999999998852  11100                      0000000000 00     0011


Q ss_pred             CCEEEEEEEEEcCCCcccccccccCcCCCcEEEEEEECCCcchH-----H-HHHHHHHHHHhhhCCCCC-EEEEeeCccc
Q psy15714         67 DNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSY-----E-NILSKWYPELKHHCPKVP-IILVGTKADL  139 (205)
Q Consensus        67 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~-----~-~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl  139 (205)
                      ......+.+.|+|||..|-.........+|++++|+|+.+..--     . ... +.+..+...  ++| ++++.||+|+
T Consensus        98 ~~~~~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~-e~l~l~~~~--~i~~iiv~iNKmD~  174 (245)
T d1r5ba3          98 ETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTR-EHAVLARTQ--GINHLVVVINKMDE  174 (245)
T ss_dssp             ECSSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHH-HHHHHHHHT--TCSSEEEEEECTTS
T ss_pred             ccccceeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchH-HHHHHHHHc--CCCeEEEEEEcCCC
Confidence            12225688899999999999888889999999999999874211     0 111 233333333  565 7899999998


Q ss_pred             ccCchhhhhhhhhccccccHHHHHHHHHHc-C-----CceEEEcccCCCCCHHHHHH
Q psy15714        140 RSENKTIDKKKAAEVDLVSTSQGKKMRRKI-K-----AAEYLECSAKLNEGLDQVFI  190 (205)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~Sa~~~~~i~~~~~  190 (205)
                      ..........      .-..++...+.+.. +     ..+++++||++|+||.++++
T Consensus       175 ~~~~~~e~~~------~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~~  225 (245)
T d1r5ba3         175 PSVQWSEERY------KECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVD  225 (245)
T ss_dssp             TTCSSCHHHH------HHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCC
T ss_pred             CccchhHHHH------HHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccchh
Confidence            7543211100      00112222222222 1     13589999999999987643

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.63  E-value=7.3e-16  Score=112.30  Aligned_cols=153  Identities=14%  Similarity=0.096  Sum_probs=96.1

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhc--CCCCC----------------C--C------cCc---ccccc---ceeEEECC
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTE--NKFPT----------------D--Y------VPT---VFDNY---PDTITVDN   68 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~--~~~~~----------------~--~------~~t---~~~~~---~~~~~~~~   68 (205)
                      +..++|+++|..++|||||+.+++.  +.+..                .  +      .+.   .+...   ...+...+
T Consensus         4 k~~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~   83 (239)
T d1f60a3           4 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK   83 (239)
T ss_dssp             CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred             CCccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccCC
Confidence            4458999999999999999988862  11110                0  0      000   01111   11223334


Q ss_pred             EEEEEEEEEcCCCcccccccccCcCCCcEEEEEEECCCcchH-----H-HHHHHHHHHHhhhCCCCC-EEEEeeCccccc
Q psy15714         69 KTYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSY-----E-NILSKWYPELKHHCPKVP-IILVGTKADLRS  141 (205)
Q Consensus        69 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~-----~-~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~  141 (205)
                        .++.|.|+|||..|.......+..+|++|+|+|+.+...-     . ... +.+......  ++| ++|+.||+|+..
T Consensus        84 --~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~-eh~~~~~~~--gv~~iiv~iNKmD~~~  158 (239)
T d1f60a3          84 --YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTR-EHALLAFTL--GVRQLIVAVNKMDSVK  158 (239)
T ss_dssp             --EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHH-HHHHHHHHT--TCCEEEEEEECGGGGT
T ss_pred             --EEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHH-HHHHHHHHc--CCCeEEEEEECCCCCC
Confidence              6789999999999998888899999999999999764210     0 112 222333344  676 788999999876


Q ss_pred             CchhhhhhhhhccccccHHHHHHHHHHcCC----ceEEEcccCCCCCHH
Q psy15714        142 ENKTIDKKKAAEVDLVSTSQGKKMRRKIKA----AEYLECSAKLNEGLD  186 (205)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~  186 (205)
                      .....-        ....++...+....+.    .+++.+||..|+|+-
T Consensus       159 ~d~~~~--------~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~  199 (239)
T d1f60a3         159 WDESRF--------QEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMI  199 (239)
T ss_dssp             TCHHHH--------HHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTT
T ss_pred             CCHHHH--------HHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCcce
Confidence            542100        1122344445554443    347999999998863

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.59  E-value=2e-15  Score=117.94  Aligned_cols=170  Identities=15%  Similarity=0.102  Sum_probs=95.2

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCC-cCc--ccccc-ceeEEECCEEEEEEEEEcCCCccccc-----ccccC
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDY-VPT--VFDNY-PDTITVDNKTYDVTLWDTAGQEDYER-----LRPMS   91 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~-~~t--~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~-----~~~~~   91 (205)
                      ...++|+|+|.+|+|||||+|++.+....... .++  .++.. ...+... ....+.+|||||-.....     +....
T Consensus        54 ~~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~~~-~~~~~~l~DtPG~~~~~~~~~~~~~~~~  132 (400)
T d1tq4a_          54 SSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHP-NIPNVVFWDLPGIGSTNFPPDTYLEKMK  132 (400)
T ss_dssp             HCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECS-SCTTEEEEECCCGGGSSCCHHHHHHHTT
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeeecc-CCCeEEEEeCCCcccccccHHHHHHHhh
Confidence            35799999999999999999999975432211 111  11111 1222222 223478999999543211     12334


Q ss_pred             cCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHH----HHHHH
Q psy15714         92 YPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQG----KKMRR  167 (205)
Q Consensus        92 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~----~~~~~  167 (205)
                      +..+|+++++.|..  -+-.+.  .++..+.+.  +.|+++|.||+|................ .-..++.    ....+
T Consensus       133 ~~~~d~~l~~~~~~--~~~~d~--~l~~~l~~~--~k~~~~V~nK~D~~~~~~~~~~~~~~~~-e~~l~~ir~~~~~~l~  205 (400)
T d1tq4a_         133 FYEYDFFIIISATR--FKKNDI--DIAKAISMM--KKEFYFVRTKVDSDITNEADGEPQTFDK-EKVLQDIRLNCVNTFR  205 (400)
T ss_dssp             GGGCSEEEEEESSC--CCHHHH--HHHHHHHHT--TCEEEEEECCHHHHHHHHHTTCCTTCCH-HHHHHHHHHHHHHHHH
T ss_pred             hhcceEEEEecCCC--CCHHHH--HHHHHHHHc--CCCEEEEEeCcccccchhhhcccccccH-HHHHHHHHHHHHHHHH
Confidence            66788888877632  232332  566667666  8999999999997533221111000000 0001111    11122


Q ss_pred             Hc--CCceEEEcccCC--CCCHHHHHHHHHHHHHh
Q psy15714        168 KI--KAAEYLECSAKL--NEGLDQVFIAAVRSAVK  198 (205)
Q Consensus       168 ~~--~~~~~~~~Sa~~--~~~i~~~~~~i~~~~~~  198 (205)
                      ..  ...+++.+|...  .+++.++.+.+.+.+..
T Consensus       206 ~~~~~~~~vflvS~~~~~~~d~~~L~~~l~~~L~~  240 (400)
T d1tq4a_         206 ENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPI  240 (400)
T ss_dssp             HTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCG
T ss_pred             HcCCCCCCEEEecCCcccccCHHHHHHHHHHHhHH
Confidence            22  234478888764  46899999888777544

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.59  E-value=4.5e-15  Score=107.32  Aligned_cols=158  Identities=15%  Similarity=0.079  Sum_probs=93.3

Q ss_pred             eeeEEEEECCCCCCHHHHHHHHhc--CCCCCCC----------------------c--C---cccccc-ceeEEECCEEE
Q psy15714         22 KALKVTTVGDGMVGKTCLLITHTE--NKFPTDY----------------------V--P---TVFDNY-PDTITVDNKTY   71 (205)
Q Consensus        22 ~~~ki~v~G~~~~GKstli~~~~~--~~~~~~~----------------------~--~---t~~~~~-~~~~~~~~~~~   71 (205)
                      ..++|+++|..++|||||+.+++.  +......                      .  +   ..+... .....+.....
T Consensus         2 p~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~~   81 (224)
T d1jnya3           2 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKY   81 (224)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSC
T ss_pred             CccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEecCCc
Confidence            358999999999999999988852  1111000                      0  0   000000 00111222335


Q ss_pred             EEEEEEcCCCcccccccccCcCCCcEEEEEEECCCcchHH------HHHHHHHHHHhhhCCCCCEEEEeeCcccccCchh
Q psy15714         72 DVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYE------NILSKWYPELKHHCPKVPIILVGTKADLRSENKT  145 (205)
Q Consensus        72 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~------~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~  145 (205)
                      .+.+.|+|||..|.......+..+|++|+|+|+.+...-.      ... +.+...... .-.+++++.||+|+......
T Consensus        82 ~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~-e~l~~~~~~-~~~~iIv~iNK~D~~~~~~~  159 (224)
T d1jnya3          82 FFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTR-EHIILAKTM-GLDQLIVAVNKMDLTEPPYD  159 (224)
T ss_dssp             EEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHH-HHHHHHHHT-TCTTCEEEEECGGGSSSTTC
T ss_pred             eeEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhH-HHHHHHHHh-CCCceEEEEEcccCCCcccc
Confidence            6889999999999998888899999999999998753211      111 122222222 23468899999998754322


Q ss_pred             hhhhhhhccccccHHHHHHHHHHcCC----ceEEEcccCCCCCHHH
Q psy15714        146 IDKKKAAEVDLVSTSQGKKMRRKIKA----AEYLECSAKLNEGLDQ  187 (205)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~  187 (205)
                      ....      ....++...+...++.    .+++++||..|.|+.+
T Consensus       160 ~~~~------~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~~  199 (224)
T d1jnya3         160 EKRY------KEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH  199 (224)
T ss_dssp             HHHH------HHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred             HHHH------HHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCccc
Confidence            1110      1112234444444432    3478999999999753

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=99.51  E-value=9.2e-15  Score=106.72  Aligned_cols=125  Identities=18%  Similarity=0.043  Sum_probs=71.7

Q ss_pred             EEEEEEEcCCCccccccccc---C--cCCCcEEEEEEECCCcchHHHHHHHH---HHHHhhhCCCCCEEEEeeCcccccC
Q psy15714         71 YDVTLWDTAGQEDYERLRPM---S--YPNTDCFLLCFSIGSTSSYENILSKW---YPELKHHCPKVPIILVGTKADLRSE  142 (205)
Q Consensus        71 ~~~~i~D~~g~~~~~~~~~~---~--~~~~~~~i~v~d~~~~~s~~~~~~~~---~~~~~~~~~~~p~ivv~nK~Dl~~~  142 (205)
                      ..+.+.|+||+..+......   .  ....+.++++.|+............+   .....+.  ..|.++++||+|+...
T Consensus        95 ~~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~~--~~~~ivvinK~D~~~~  172 (244)
T d1yrba1          95 NDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRL--GATTIPALNKVDLLSE  172 (244)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHHH--TSCEEEEECCGGGCCH
T ss_pred             cceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHHHh--CCCceeeeeccccccH
Confidence            45888899998765332211   1  23466889999876433322221111   1112233  8999999999999876


Q ss_pred             chhhhhhhhhc-----------c----ccccHHHHHHHHHHcCCceEEEcccCCCCCHHHHHHHHHHHHH
Q psy15714        143 NKTIDKKKAAE-----------V----DLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQVFIAAVRSAV  197 (205)
Q Consensus       143 ~~~~~~~~~~~-----------~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~  197 (205)
                      ...........           .    ...............+..+++++||++|+|+++++..|.+.+.
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~~~  242 (244)
T d1yrba1         173 EEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYC  242 (244)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHHhc
Confidence            54322211100           0    0001111111222234556899999999999999999888653

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.49  E-value=2.7e-14  Score=108.59  Aligned_cols=117  Identities=15%  Similarity=0.163  Sum_probs=80.5

Q ss_pred             eeeE-EEEECCCCCCHHHHHHHHhc--CCCCCC------CcCcccc------cc-ceeEE----------------ECCE
Q psy15714         22 KALK-VTTVGDGMVGKTCLLITHTE--NKFPTD------YVPTVFD------NY-PDTIT----------------VDNK   69 (205)
Q Consensus        22 ~~~k-i~v~G~~~~GKstli~~~~~--~~~~~~------~~~t~~~------~~-~~~~~----------------~~~~   69 (205)
                      ..+| |+|+|+.++|||||+.++..  +.....      +.-+...      .. ...+.                .++.
T Consensus        15 ~~IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~~   94 (341)
T d1n0ua2          15 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN   94 (341)
T ss_dssp             GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred             ccCcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhcccccc
Confidence            4464 99999999999999999862  211110      0000000      00 00111                1345


Q ss_pred             EEEEEEEEcCCCcccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccC
Q psy15714         70 TYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSE  142 (205)
Q Consensus        70 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  142 (205)
                      .+.+.++|||||..|.......++.+|++++|+|+.+.-..+...  .+......  ++|+++++||+|....
T Consensus        95 ~~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~~--~~~~a~~~--~~p~i~viNKiDr~~~  163 (341)
T d1n0ua2          95 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTET--VLRQALGE--RIKPVVVINKVDRALL  163 (341)
T ss_dssp             EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHH--HHHHHHHT--TCEEEEEEECHHHHHH
T ss_pred             ceEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHHH--HHHHHHHc--CCCeEEEEECcccccc
Confidence            678999999999999988888899999999999999987766643  33444444  8999999999997543

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.45  E-value=1.5e-12  Score=95.80  Aligned_cols=120  Identities=12%  Similarity=0.083  Sum_probs=75.5

Q ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCC--CCcCccccccceeEEECCEEEEEEEEEcCCCcccccc---------c
Q psy15714         20 VHKALKVTTVGDGMVGKTCLLITHTENKFPT--DYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERL---------R   88 (205)
Q Consensus        20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~---------~   88 (205)
                      ....++|+++|.+|+|||||+|++++.....  ...+++..........++  ..+.++||||-......         .
T Consensus        29 ~~~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~g--~~i~viDTPGl~~~~~~~~~~~~~i~~  106 (257)
T d1h65a_          29 DVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYINDMALNIIKS  106 (257)
T ss_dssp             TCCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEecc--EEEEEEeeecccCCcchHHHHHHHHHH
Confidence            3567999999999999999999999876432  223333333344556677  46889999995322111         1


Q ss_pred             ccCcCCCcEEEEEEECCCcc-hHHHHHHHHHHHHhhhC-C--CCCEEEEeeCcccccCc
Q psy15714         89 PMSYPNTDCFLLCFSIGSTS-SYENILSKWYPELKHHC-P--KVPIILVGTKADLRSEN  143 (205)
Q Consensus        89 ~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~-~--~~p~ivv~nK~Dl~~~~  143 (205)
                      .......++++||++++... +-.+.  ..+..+...+ .  -.+++||.||.|....+
T Consensus       107 ~~~~~~~~~il~v~~~~~~r~~~~~~--~~l~~l~~~fg~~~~~~~ivv~t~~D~~~~~  163 (257)
T d1h65a_         107 FLLDKTIDVLLYVDRLDAYRVDNLDK--LVAKAITDSFGKGIWNKAIVALTHAQFSPPD  163 (257)
T ss_dssp             HTTTCEECEEEEEEESSCCCCCHHHH--HHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred             HHhcCCCCeEEEEEECCCCCCCHHHH--HHHHHHHHHcchhhhhCEEEEEECcccCCcC
Confidence            12234578899998877542 22221  2333333222 1  35799999999987644

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=99.28  E-value=6.7e-12  Score=94.94  Aligned_cols=104  Identities=19%  Similarity=0.249  Sum_probs=57.1

Q ss_pred             EEEEEcCCCcccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhh
Q psy15714         73 VTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAA  152 (205)
Q Consensus        73 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~  152 (205)
                      +.+.++.|...-..   .+...+|.+++|.++......+..+..   .+     .++=++|+||+|+......       
T Consensus       149 ~iliEtvG~gq~e~---~i~~~aD~~l~v~~P~~Gd~iq~~k~g---i~-----e~aDi~VvNKaD~~~~~~~-------  210 (327)
T d2p67a1         149 VVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKKG---LM-----EVADLIVINKDDGDNHTNV-------  210 (327)
T ss_dssp             EEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCHH---HH-----HHCSEEEECCCCTTCHHHH-------
T ss_pred             eEEEeeccccccch---hhhhccceEEEEecCCCchhhhhhchh---hh-----ccccEEEEEeecccchHHH-------
Confidence            44555555322211   245678999999887655544433311   12     1234889999998764321       


Q ss_pred             ccccccHHHHHHHHHHc------CCceEEEcccCCCCCHHHHHHHHHHHHH
Q psy15714        153 EVDLVSTSQGKKMRRKI------KAAEYLECSAKLNEGLDQVFIAAVRSAV  197 (205)
Q Consensus       153 ~~~~~~~~~~~~~~~~~------~~~~~~~~Sa~~~~~i~~~~~~i~~~~~  197 (205)
                         .....+.+...+..      -.++++.|||.+|+|++++++.|.+...
T Consensus       211 ---~~~~~~~~~al~~~~~~~~~w~p~V~~~SA~~g~Gi~eL~~~I~~~~~  258 (327)
T d2p67a1         211 ---AIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT  258 (327)
T ss_dssp             ---HHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHhhhcccCCCCCcceeEEEEeeCCCCHHHHHHHHHHHHH
Confidence               11122222222211      1235999999999999999999876543

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=99.27  E-value=3.3e-11  Score=90.97  Aligned_cols=104  Identities=19%  Similarity=0.235  Sum_probs=61.6

Q ss_pred             EEEEEEEcCCCcccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhh
Q psy15714         71 YDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKK  150 (205)
Q Consensus        71 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~  150 (205)
                      +.+.|..+.|.-.-..   ....-+|..++|..+...+..+....   .++     .++=++|+||+|+.....      
T Consensus       144 ~d~iiiETVG~gq~e~---~~~~~~D~~v~v~~p~~GD~iQ~~k~---gil-----E~aDi~vvNKaD~~~~~~------  206 (323)
T d2qm8a1         144 FDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQGIKK---GIF-----ELADMIAVNKADDGDGER------  206 (323)
T ss_dssp             CCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC------CCT---THH-----HHCSEEEEECCSTTCCHH------
T ss_pred             CCeEEEeehhhhhhhh---hhhcccceEEEEeeccchhhhhhhhh---hHh-----hhhheeeEeccccccchH------
Confidence            4566777776533222   23456999999999887665554331   122     233489999999876542      


Q ss_pred             hhccccccHHHHHHHHHHc---------CCceEEEcccCCCCCHHHHHHHHHHHHH
Q psy15714        151 AAEVDLVSTSQGKKMRRKI---------KAAEYLECSAKLNEGLDQVFIAAVRSAV  197 (205)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~---------~~~~~~~~Sa~~~~~i~~~~~~i~~~~~  197 (205)
                            ........+...+         ..++++.+||.++.|+++++++|.+...
T Consensus       207 ------~~~~~~~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~~  256 (323)
T d2qm8a1         207 ------RASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS  256 (323)
T ss_dssp             ------HHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             ------HHHHHHHHHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHHH
Confidence                  1111111122211         2245999999999999999999977644

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=99.06  E-value=1.3e-09  Score=80.74  Aligned_cols=83  Identities=19%  Similarity=0.172  Sum_probs=52.9

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCC-CCCcCccccccceeEEECC------------EE---EEEEEEEcCCCcc---
Q psy15714         23 ALKVTTVGDGMVGKTCLLITHTENKFP-TDYVPTVFDNYPDTITVDN------------KT---YDVTLWDTAGQED---   83 (205)
Q Consensus        23 ~~ki~v~G~~~~GKstli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~------------~~---~~~~i~D~~g~~~---   83 (205)
                      .+||.++|.|+||||||++++++.... .+|+.++...-.-.+.+.+            ..   ..+.+.|+||--.   
T Consensus         2 ~~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga~   81 (278)
T d1jala1           2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS   81 (278)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCcc
Confidence            579999999999999999999977643 4455554333222333332            11   2588899999422   


Q ss_pred             -ccccccc---CcCCCcEEEEEEECC
Q psy15714         84 -YERLRPM---SYPNTDCFLLCFSIG  105 (205)
Q Consensus        84 -~~~~~~~---~~~~~~~~i~v~d~~  105 (205)
                       -+.+...   .++.+|+++.|+|+.
T Consensus        82 ~g~Glg~~FL~~ir~~d~LihVVr~f  107 (278)
T d1jala1          82 KGEGLGNKFLANIRETDAIGHVVRCF  107 (278)
T ss_dssp             HHGGGTCCHHHHHHTCSEEEEEEECS
T ss_pred             cCCCccHHHHHHHHhccceEEEeecc
Confidence             2223222   367899999999863

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.94  E-value=2.8e-09  Score=79.61  Aligned_cols=118  Identities=19%  Similarity=0.162  Sum_probs=70.3

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCC-CCCCcCccccccceeE--------EE---C-----------------------
Q psy15714         23 ALKVTTVGDGMVGKTCLLITHTENKF-PTDYVPTVFDNYPDTI--------TV---D-----------------------   67 (205)
Q Consensus        23 ~~ki~v~G~~~~GKstli~~~~~~~~-~~~~~~t~~~~~~~~~--------~~---~-----------------------   67 (205)
                      ..+|+|+|..++|||||+|++++..+ +....+++........        ..   .                       
T Consensus        26 ~P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (299)
T d2akab1          26 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG  105 (299)
T ss_dssp             CCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHCS
T ss_pred             CCeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCccccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHHhhC
Confidence            45899999999999999999999876 3332232211100000        00   0                       


Q ss_pred             ------C----------EEEEEEEEEcCCCccc-------------ccccccCcCCCc-EEEEEEECCCcchHHHHHHHH
Q psy15714         68 ------N----------KTYDVTLWDTAGQEDY-------------ERLRPMSYPNTD-CFLLCFSIGSTSSYENILSKW  117 (205)
Q Consensus        68 ------~----------~~~~~~i~D~~g~~~~-------------~~~~~~~~~~~~-~~i~v~d~~~~~s~~~~~~~~  117 (205)
                            .          ....+.++|+||-...             ..+...++...+ ++++|.++....+-.... .|
T Consensus       106 ~~~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~-~~  184 (299)
T d2akab1         106 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL-KI  184 (299)
T ss_dssp             STTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHH-HH
T ss_pred             CCcCcCCccEEEEEcCCCCCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHH-HH
Confidence                  0          0123789999994321             122233445555 566677776555444443 45


Q ss_pred             HHHHhhhCCCCCEEEEeeCcccccCc
Q psy15714        118 YPELKHHCPKVPIILVGTKADLRSEN  143 (205)
Q Consensus       118 ~~~~~~~~~~~p~ivv~nK~Dl~~~~  143 (205)
                      ...+...  ..++++|.||+|.....
T Consensus       185 ~~~~~~~--~~r~i~Vltk~D~~~~~  208 (299)
T d2akab1         185 AKEVDPQ--GQRTIGVITKLDLMDEG  208 (299)
T ss_dssp             HHHHCTT--CSSEEEEEECGGGSCTT
T ss_pred             HHHhCcC--CCceeeEEeccccccch
Confidence            5555444  57899999999987653

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.89  E-value=2.9e-09  Score=80.30  Aligned_cols=83  Identities=17%  Similarity=0.114  Sum_probs=45.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCC-CCCCcCcccccc-cee---------------------EEECCEEEEEEEEEcCC
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTENKF-PTDYVPTVFDNY-PDT---------------------ITVDNKTYDVTLWDTAG   80 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~~~-~~~~~~t~~~~~-~~~---------------------~~~~~~~~~~~i~D~~g   80 (205)
                      ++|.++|.|+||||||+|++++.+. ..+|+.|+.+.. ...                     .........++++|+||
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pG   80 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CcEeEECCCCCCHHHHHHHHHCCCCchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECCC
Confidence            5899999999999999999998654 234444432111 000                     00112346799999999


Q ss_pred             Cccc----ccc---cccCcCCCcEEEEEEECCC
Q psy15714         81 QEDY----ERL---RPMSYPNTDCFLLCFSIGS  106 (205)
Q Consensus        81 ~~~~----~~~---~~~~~~~~~~~i~v~d~~~  106 (205)
                      -...    ..+   .-..++.+|++++|+|+.+
T Consensus        81 li~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~~  113 (319)
T d1wxqa1          81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATG  113 (319)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTC
T ss_pred             cccchhcccchHHHHHHhhccceEEEEEecccc
Confidence            4221    111   2234678999999999863

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=98.78  E-value=2.6e-09  Score=80.07  Aligned_cols=26  Identities=23%  Similarity=0.360  Sum_probs=23.7

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCC
Q psy15714         23 ALKVTTVGDGMVGKTCLLITHTENKF   48 (205)
Q Consensus        23 ~~ki~v~G~~~~GKstli~~~~~~~~   48 (205)
                      ..+|+|+|..++|||||+|++.+..+
T Consensus        24 lP~ivVvG~~ssGKSSliNaLlG~~~   49 (306)
T d1jwyb_          24 LPQIVVVGSQSSGKSSVLENIVGRDF   49 (306)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHTSCC
T ss_pred             CCeEEEEeCCCCCHHHHHHHHhCCCC
Confidence            35899999999999999999998776

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.77  E-value=6.7e-09  Score=77.43  Aligned_cols=85  Identities=21%  Similarity=0.207  Sum_probs=57.6

Q ss_pred             eeeEEEEECCCCCCHHHHHHHHhcCCC--CCCCcCccccccceeEEECC---------------EEEEEEEEEcCCCcc-
Q psy15714         22 KALKVTTVGDGMVGKTCLLITHTENKF--PTDYVPTVFDNYPDTITVDN---------------KTYDVTLWDTAGQED-   83 (205)
Q Consensus        22 ~~~ki~v~G~~~~GKstli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~---------------~~~~~~i~D~~g~~~-   83 (205)
                      ..+||.++|.|+||||||++++++...  ..+|+.|+.+.-.-.+.+.+               ....+++.|+||-.. 
T Consensus         9 ~~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~g   88 (296)
T d1ni3a1           9 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG   88 (296)
T ss_dssp             SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeeccccccc
Confidence            448999999999999999999997643  45666666443333344332               124688899998432 


Q ss_pred             ---cccc---cccCcCCCcEEEEEEECCC
Q psy15714         84 ---YERL---RPMSYPNTDCFLLCFSIGS  106 (205)
Q Consensus        84 ---~~~~---~~~~~~~~~~~i~v~d~~~  106 (205)
                         -+.+   +-..++.+|+++.|+|+.+
T Consensus        89 A~~g~GLGn~fL~~ir~~d~lihVV~~f~  117 (296)
T d1ni3a1          89 ASTGVGLGNAFLSHVRAVDAIYQVVRAFD  117 (296)
T ss_dssp             CCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             cccccccHHHHHHHhhccceeEEEEeccC
Confidence               1111   2234688999999998764

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.51  E-value=3e-07  Score=65.04  Aligned_cols=87  Identities=16%  Similarity=0.209  Sum_probs=60.3

Q ss_pred             cCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHc
Q psy15714         90 MSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKI  169 (205)
Q Consensus        90 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (205)
                      -...+.|.+++|+++.++.--..+...++-.....  ++|.+||+||+||.+..              ..+....+...+
T Consensus         6 P~vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~~--~i~pvIvlnK~DL~~~~--------------~~~~~~~~~~~~   69 (225)
T d1u0la2           6 PHVANVDQVILVVTVKMPETSTYIIDKFLVLAEKN--ELETVMVINKMDLYDED--------------DLRKVRELEEIY   69 (225)
T ss_dssp             TTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHT--TCEEEEEECCGGGCCHH--------------HHHHHHHHHHHH
T ss_pred             CCcccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHc--CCCEEEEEeCcccCCHH--------------HHHHHHHhhccc
Confidence            35678999999999887653333334666666666  99999999999997642              112222333322


Q ss_pred             -CCceEEEcccCCCCCHHHHHHHH
Q psy15714        170 -KAAEYLECSAKLNEGLDQVFIAA  192 (205)
Q Consensus       170 -~~~~~~~~Sa~~~~~i~~~~~~i  192 (205)
                       ...+++.+|+++++|++++...+
T Consensus        70 ~~~~~v~~vSa~~~~g~~~L~~~l   93 (225)
T d1u0la2          70 SGLYPIVKTSAKTGMGIEELKEYL   93 (225)
T ss_dssp             TTTSCEEECCTTTCTTHHHHHHHH
T ss_pred             ccceeEEEeccccchhHhhHHHHh
Confidence             22348999999999999988766

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.45  E-value=1.3e-07  Score=69.52  Aligned_cols=58  Identities=19%  Similarity=0.205  Sum_probs=36.6

Q ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCcccccc-ceeEEECCEEEEEEEEEcCCC
Q psy15714         20 VHKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNY-PDTITVDNKTYDVTLWDTAGQ   81 (205)
Q Consensus        20 ~~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~   81 (205)
                      ....++|+|+|.|+||||||+|++.+.+... ..++.+... ...+..+.   .+.++||||-
T Consensus       109 ~~~~~~v~vvG~PNvGKSsliN~L~~~~~~~-~~~~pG~Tr~~~~i~~~~---~~~l~DTPGi  167 (273)
T d1puja_         109 KPRAIRALIIGIPNVGKSTLINRLAKKNIAK-TGDRPGITTSQQWVKVGK---ELELLDTPGI  167 (273)
T ss_dssp             CCCCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CCEEETT---TEEEEECCCC
T ss_pred             CCCceEEEEEecCccchhhhhhhhhccceEE-ECCcccccccceEEECCC---CeEEecCCCc
Confidence            4567999999999999999999999876432 122222222 12233322   3788899995

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.27  E-value=3.1e-07  Score=65.20  Aligned_cols=89  Identities=20%  Similarity=0.137  Sum_probs=60.4

Q ss_pred             cCcCCCcEEEEEEECCCcc-hHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHH
Q psy15714         90 MSYPNTDCFLLCFSIGSTS-SYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRK  168 (205)
Q Consensus        90 ~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (205)
                      -...+.|.+++|+++.++. +...+ ..++-.....  +++.+||+||+||......          ....+........
T Consensus         6 P~vANiD~~~iV~s~~~P~~~~~~i-dR~Lv~a~~~--~i~pvIvlnK~DL~~~~~~----------~~~~~~~~~~y~~   72 (231)
T d1t9ha2           6 PPICNVDQAVLVFSAVQPSFSTALL-DRFLVLVEAN--DIQPIICITKMDLIEDQDT----------EDTIQAYAEDYRN   72 (231)
T ss_dssp             TTEECCCEEEEEEESTTTTCCHHHH-HHHHHHHHTT--TCEEEEEEECGGGCCCHHH----------HHHHHHHHHHHHH
T ss_pred             CCccccCEEEEEEECCCCCCCHHHH-HHHHHHHHHc--CCCEEEEEecccccccHHH----------HHHHHHHHHHHhh
Confidence            3467899999999988764 33333 3565555555  8999999999999765311          0011122233345


Q ss_pred             cCCceEEEcccCCCCCHHHHHHHH
Q psy15714        169 IKAAEYLECSAKLNEGLDQVFIAA  192 (205)
Q Consensus       169 ~~~~~~~~~Sa~~~~~i~~~~~~i  192 (205)
                      .+.. ++.+|+++++|++++..++
T Consensus        73 ~g~~-v~~~Sa~~~~gl~~L~~~l   95 (231)
T d1t9ha2          73 IGYD-VYLTSSKDQDSLADIIPHF   95 (231)
T ss_dssp             HTCC-EEECCHHHHTTCTTTGGGG
T ss_pred             cccc-ceeeecCChhHHHHHHHhh
Confidence            5766 9999999999998887654

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.21  E-value=1.7e-06  Score=63.29  Aligned_cols=88  Identities=16%  Similarity=0.055  Sum_probs=60.2

Q ss_pred             cCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHc
Q psy15714         90 MSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKI  169 (205)
Q Consensus        90 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (205)
                      ..++.+|++++|.|+-++.+..+-  .+..    ...+.|.++|+||+|+.+..             ...+....+ +..
T Consensus        11 ~~i~~~DvIl~V~DaR~P~ss~~~--~l~~----~~~~Kp~IlVlNK~DLv~~~-------------~~~~w~~~f-~~~   70 (273)
T d1puja_          11 EKLKLIDIVYELVDARIPMSSRNP--MIED----ILKNKPRIMLLNKADKADAA-------------VTQQWKEHF-ENQ   70 (273)
T ss_dssp             HHGGGCSEEEEEEETTSTTTTSCH--HHHH----HCSSSCEEEEEECGGGSCHH-------------HHHHHHHHH-HTT
T ss_pred             HHHHhCCEEEEEEECCCCCCCCCH--HHHH----HHcCCCeEEEEECccCCchH-------------HHHHHHHHH-Hhc
Confidence            467899999999999888665442  2222    22378999999999987642             222223333 333


Q ss_pred             CCceEEEcccCCCCCHHHHHHHHHHHHHh
Q psy15714        170 KAAEYLECSAKLNEGLDQVFIAAVRSAVK  198 (205)
Q Consensus       170 ~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  198 (205)
                      +.. .+.+|+..+.+..++...+.+.+..
T Consensus        71 ~~~-~i~isa~~~~~~~~~~~~~~~~l~~   98 (273)
T d1puja_          71 GIR-SLSINSVNGQGLNQIVPASKEILQE   98 (273)
T ss_dssp             TCC-EEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred             CCc-cceeecccCCCccccchhhhhhhhh
Confidence            444 8999999999988887777665544

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.05  E-value=1e-05  Score=57.25  Aligned_cols=21  Identities=29%  Similarity=0.115  Sum_probs=19.1

Q ss_pred             EEEECCCCCCHHHHHHHHhcC
Q psy15714         26 VTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        26 i~v~G~~~~GKstli~~~~~~   46 (205)
                      ++|.|..|||||||++++...
T Consensus         6 ~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           6 TLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             EEEEESSSSSCHHHHHHHHHS
T ss_pred             EEEeeCCCCCHHHHHHHHHhc
Confidence            689999999999999998875

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.00  E-value=2.9e-06  Score=59.86  Aligned_cols=57  Identities=19%  Similarity=0.088  Sum_probs=33.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCC--CCcC-----ccccccceeEEECCEEEEEEEEEcCCCccc
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENKFPT--DYVP-----TVFDNYPDTITVDNKTYDVTLWDTAGQEDY   84 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~~~~--~~~~-----t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~   84 (205)
                      ..+++|.+|||||||+|++.+.....  ....     -..+.....+..++.   -.|+|+||-..+
T Consensus        97 t~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~l~~g---g~iiDTPG~r~~  160 (225)
T d1u0la2          97 ISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFG---GYVVDTPGFANL  160 (225)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTS---CEEESSCSSTTC
T ss_pred             eEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEEECCC---cEEEeCCccccc
Confidence            57999999999999999998753211  1011     112222334445432   457799996443

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.93  E-value=2.5e-06  Score=57.96  Aligned_cols=22  Identities=36%  Similarity=0.493  Sum_probs=20.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHhc
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~   45 (205)
                      +||+++|++|+|||||++.+.+
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~   22 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVE   22 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHHh
Confidence            5899999999999999988875

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.79  E-value=5.1e-06  Score=58.79  Aligned_cols=57  Identities=19%  Similarity=0.117  Sum_probs=32.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCC------CCC-cCccccccceeEEECCEEEEEEEEEcCCCcccc
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENKFP------TDY-VPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYE   85 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~~~------~~~-~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~   85 (205)
                      ..+++|.+|+|||||+|++.+....      ... .....+.....+..+|.    .|+|+||-..+.
T Consensus        99 ~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~~~~rGrHTTt~~~l~~~~gg----~iiDTPG~r~~~  162 (231)
T d1t9ha2          99 TTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGG----LVADTPGFSSLE  162 (231)
T ss_dssp             EEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETTE----EEESSCSCSSCC
T ss_pred             eEEEECCCCccHHHHHHhhccHhHhhhcccccccCCCceeeeeEEEEecCCC----EEEECCcccccc
Confidence            5679999999999999999975321      110 01011222223445552    366999976543

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.75  E-value=8.2e-06  Score=54.98  Aligned_cols=26  Identities=19%  Similarity=0.213  Sum_probs=22.7

Q ss_pred             cceeeEEEEECCCCCCHHHHHHHHhc
Q psy15714         20 VHKALKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        20 ~~~~~ki~v~G~~~~GKstli~~~~~   45 (205)
                      .++.++|+++|++||||||+.+.|..
T Consensus         2 ~pk~~~I~i~G~~GsGKTT~~~~La~   27 (174)
T d1y63a_           2 QPKGINILITGTPGTGKTSMAEMIAA   27 (174)
T ss_dssp             CCSSCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCCEEEEEeCCCCCHHHHHHHHHH
Confidence            35678999999999999999988865

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.72  E-value=7e-06  Score=55.79  Aligned_cols=23  Identities=26%  Similarity=0.323  Sum_probs=20.6

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhc
Q psy15714         23 ALKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        23 ~~ki~v~G~~~~GKstli~~~~~   45 (205)
                      .=+|+|.|++|+|||||+++|..
T Consensus         7 ~K~I~i~G~~GsGKTTla~~La~   29 (192)
T d1lw7a2           7 AKTVAILGGESSGKSVLVNKLAA   29 (192)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            34799999999999999998875

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.66  E-value=9.4e-06  Score=54.53  Aligned_cols=23  Identities=26%  Similarity=0.159  Sum_probs=20.3

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhc
Q psy15714         23 ALKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        23 ~~ki~v~G~~~~GKstli~~~~~   45 (205)
                      -.+|+++|+|||||||+.+++..
T Consensus         4 ~~~I~i~G~pGsGKTTia~~La~   26 (173)
T d1rkba_           4 LPNILLTGTPGVGKTTLGKELAS   26 (173)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999988864

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.61  E-value=1.8e-05  Score=54.49  Aligned_cols=27  Identities=19%  Similarity=0.211  Sum_probs=23.1

Q ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcC
Q psy15714         20 VHKALKVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        20 ~~~~~ki~v~G~~~~GKstli~~~~~~   46 (205)
                      +.+.+||+++|+|||||||+...+...
T Consensus         3 ~~r~mrIiliG~PGSGKtT~a~~La~~   29 (189)
T d2ak3a1           3 SARLLRAAIMGAPGSGKGTVSSRITKH   29 (189)
T ss_dssp             SSCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcceeEEEECCCCCCHHHHHHHHHHH
Confidence            346689999999999999999888753

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.57  E-value=1.8e-05  Score=52.94  Aligned_cols=21  Identities=24%  Similarity=0.085  Sum_probs=19.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q psy15714         25 KVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~   45 (205)
                      -|+|+|.+|||||||++++..
T Consensus         4 vi~itG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            489999999999999998875

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.57  E-value=2e-05  Score=53.56  Aligned_cols=22  Identities=14%  Similarity=0.061  Sum_probs=19.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHhc
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~   45 (205)
                      +||+|+|+|||||||+.+.+..
T Consensus         1 m~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIVA   22 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999977754

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.53  E-value=1.7e-05  Score=54.45  Aligned_cols=24  Identities=25%  Similarity=0.156  Sum_probs=20.7

Q ss_pred             eeeEEEEECCCCCCHHHHHHHHhc
Q psy15714         22 KALKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        22 ~~~ki~v~G~~~~GKstli~~~~~   45 (205)
                      .+++|+|+|++|+||||+.+.+..
T Consensus         2 ~Pm~I~i~GppGsGKsT~a~~La~   25 (189)
T d1zaka1           2 DPLKVMISGAPASGKGTQCELIKT   25 (189)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999977764

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.52  E-value=2.7e-05  Score=53.41  Aligned_cols=24  Identities=17%  Similarity=0.176  Sum_probs=20.9

Q ss_pred             eeeEEEEECCCCCCHHHHHHHHhc
Q psy15714         22 KALKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        22 ~~~ki~v~G~~~~GKstli~~~~~   45 (205)
                      +-+||+++|+|||||||+.+.+..
T Consensus         2 ~~~riil~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           2 KGVRAVLLGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHHH
Confidence            457999999999999999987764

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.50  E-value=3.2e-05  Score=53.19  Aligned_cols=25  Identities=20%  Similarity=0.072  Sum_probs=21.4

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhc
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~   45 (205)
                      .++..|+|+|+|||||||+.+++..
T Consensus         4 ~kp~iI~i~G~pGSGKsT~a~~La~   28 (194)
T d1qf9a_           4 SKPNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHH
Confidence            4556889999999999999988865

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.50  E-value=2.8e-05  Score=52.98  Aligned_cols=23  Identities=17%  Similarity=0.121  Sum_probs=20.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~   46 (205)
                      +||+++|+|||||||+.+.+...
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~~   23 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVEK   23 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            58999999999999999777753

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.49  E-value=2.9e-05  Score=52.80  Aligned_cols=23  Identities=22%  Similarity=0.302  Sum_probs=20.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~   46 (205)
                      +||+++|+|||||||+.+.+...
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~~   23 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAEK   23 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            58999999999999999887643

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.48  E-value=3.1e-05  Score=50.86  Aligned_cols=21  Identities=19%  Similarity=0.180  Sum_probs=18.6

Q ss_pred             EEEECCCCCCHHHHHHHHhcC
Q psy15714         26 VTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        26 i~v~G~~~~GKstli~~~~~~   46 (205)
                      |++.|+||||||||++++...
T Consensus         5 Iii~G~pGsGKTTla~~L~~~   25 (152)
T d1ly1a_           5 ILTIGCPGSGKSTWAREFIAK   25 (152)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            788999999999999988654

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.44  E-value=3.7e-05  Score=52.25  Aligned_cols=23  Identities=17%  Similarity=0.232  Sum_probs=20.5

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhc
Q psy15714         23 ALKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        23 ~~ki~v~G~~~~GKstli~~~~~   45 (205)
                      .+||+|+|+|||||||+.+.+..
T Consensus         2 ~mrIvl~G~pGSGKtT~a~~La~   24 (180)
T d1akya1           2 SIRMVLIGPPGAGKGTQAPNLQE   24 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            47899999999999999988765

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.43  E-value=3.4e-05  Score=52.36  Aligned_cols=22  Identities=18%  Similarity=0.259  Sum_probs=19.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHhc
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~   45 (205)
                      +||+++|+|||||||+.+.+..
T Consensus         1 m~I~i~G~pGSGKsT~~~~La~   22 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIME   22 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999877754

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.33  E-value=5.5e-05  Score=50.54  Aligned_cols=21  Identities=19%  Similarity=0.102  Sum_probs=18.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q psy15714         25 KVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~   45 (205)
                      -|++.|++||||||+.+++..
T Consensus         4 lI~i~G~~GsGKTTva~~L~~   24 (176)
T d2bdta1           4 LYIITGPAGVGKSTTCKRLAA   24 (176)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            388999999999999988874

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.27  E-value=8.6e-05  Score=50.89  Aligned_cols=23  Identities=26%  Similarity=0.187  Sum_probs=20.0

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhc
Q psy15714         23 ALKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        23 ~~ki~v~G~~~~GKstli~~~~~   45 (205)
                      ++.|+|+|+|||||||....+..
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~   23 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999877764

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.26  E-value=7.5e-05  Score=50.33  Aligned_cols=21  Identities=38%  Similarity=0.406  Sum_probs=18.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q psy15714         25 KVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~   45 (205)
                      .|++.|++|+|||||+..+..
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~   23 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            489999999999999977663

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.25  E-value=8e-05  Score=49.77  Aligned_cols=20  Identities=30%  Similarity=0.275  Sum_probs=17.4

Q ss_pred             EEEECCCCCCHHHHHHHHhc
Q psy15714         26 VTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        26 i~v~G~~~~GKstli~~~~~   45 (205)
                      +.|+|.+|||||||++++..
T Consensus         4 i~I~G~~gSGKTTli~~l~~   23 (165)
T d1xjca_           4 WQVVGYKHSGKTTLMEKWVA   23 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            35999999999999988764

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.23  E-value=8.6e-05  Score=49.01  Aligned_cols=22  Identities=18%  Similarity=0.164  Sum_probs=19.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~   46 (205)
                      .|+++|++|+||||+.+.+...
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~   25 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQ   25 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999877653

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.20  E-value=0.00015  Score=48.83  Aligned_cols=123  Identities=12%  Similarity=0.065  Sum_probs=61.5

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCcccccccccCcCCCcEEEE
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNTDCFLL  100 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~  100 (205)
                      ....=|+++|.|||||||+.+++....           .+ ..+..+         +..............+...  ..+
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~~~~-----------~~-~~i~~D---------~~~~~~~~~~~~~~~l~~g--~~v   68 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHLVSA-----------GY-VHVNRD---------TLGSWQRCVSSCQAALRQG--KRV   68 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHTGGG-----------TC-EEEEHH---------HHCSHHHHHHHHHHHHHTT--CCE
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHhc-----------CC-EEEchH---------HHHHHHHHHHHHHHHHHCC--CCc
Confidence            344578999999999999998885421           00 000000         0011111111111122222  235


Q ss_pred             EEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhh--hccccccHHHHHHHHHHcC
Q psy15714        101 CFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKA--AEVDLVSTSQGKKMRRKIK  170 (205)
Q Consensus       101 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  170 (205)
                      ++|.++...-..  ..|+...+..  +.++.++.-..++.........+..  .....+.......+.+.+.
T Consensus        69 IiD~t~~~~~~R--~~~~~~a~~~--~~~~~~v~l~~~~e~~~~Rn~~R~~~~~~~~~v~~~~~~~~~~~fe  136 (172)
T d1yj5a2          69 VIDNTNPDVPSR--ARYIQCAKDA--GVPCRCFNFCATIEQARHNNRFREMTDPSHAPVSDMVMFSYRKQFE  136 (172)
T ss_dssp             EEESCCCSHHHH--HHHHHHHHHH--TCCEEEEEECCCHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHCC
T ss_pred             eeeCcCCCHHHH--HHHHHHHHhc--CCCEEEEEeCCCHHHHHHHHHHhcccCcccCccHHHHHHHHHHhCC
Confidence            568777543222  2677777777  7788777767765433222222211  1122355555666666553

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.14  E-value=9.1e-05  Score=49.49  Aligned_cols=21  Identities=24%  Similarity=0.080  Sum_probs=18.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHh
Q psy15714         24 LKVTTVGDGMVGKTCLLITHT   44 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~   44 (205)
                      .||+++|++|+||||+.+.+.
T Consensus         2 p~IvliG~~G~GKSTig~~La   22 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLA   22 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHH
Confidence            368999999999999987664

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.08  E-value=0.00015  Score=48.39  Aligned_cols=21  Identities=14%  Similarity=0.101  Sum_probs=18.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q psy15714         25 KVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~   45 (205)
                      -++++|++||||||+.+++..
T Consensus         8 iivl~G~~GsGKsT~a~~La~   28 (171)
T d1knqa_           8 IYVLMGVSGSGKSAVASEVAH   28 (171)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            467799999999999988765

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.07  E-value=0.00018  Score=49.64  Aligned_cols=22  Identities=27%  Similarity=0.188  Sum_probs=19.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHhc
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~   45 (205)
                      +=|+++|.||+||||+.+++..
T Consensus         3 ~li~l~GlpgsGKSTla~~L~~   24 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKLTR   24 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4589999999999999988774

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.07  E-value=0.00021  Score=47.87  Aligned_cols=25  Identities=12%  Similarity=0.093  Sum_probs=20.2

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhc
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~   45 (205)
                      .+-+-|.++|.+||||||+.+.+..
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La~   28 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQV   28 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3447789999999999999866653

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.06  E-value=0.00015  Score=48.89  Aligned_cols=19  Identities=26%  Similarity=0.095  Sum_probs=16.9

Q ss_pred             EEEECCCCCCHHHHHHHHh
Q psy15714         26 VTTVGDGMVGKTCLLITHT   44 (205)
Q Consensus        26 i~v~G~~~~GKstli~~~~   44 (205)
                      |+|.|++||||||+++++.
T Consensus         4 I~i~G~~GsGKsT~~~~L~   22 (190)
T d1khta_           4 VVVTGVPGVGSTTSSQLAM   22 (190)
T ss_dssp             EEEECCTTSCHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            7888999999999998775

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.06  E-value=0.00023  Score=48.82  Aligned_cols=23  Identities=13%  Similarity=0.039  Sum_probs=19.8

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhc
Q psy15714         23 ALKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        23 ~~ki~v~G~~~~GKstli~~~~~   45 (205)
                      .-.|+++|+|||||||+...+..
T Consensus         8 ~~iI~i~GppGSGKsT~a~~La~   30 (196)
T d1ukza_           8 VSVIFVLGGPGAGKGTQCEKLVK   30 (196)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            44689999999999999988765

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=97.06  E-value=0.00017  Score=51.33  Aligned_cols=24  Identities=21%  Similarity=0.116  Sum_probs=20.6

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcC
Q psy15714         23 ALKVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        23 ~~ki~v~G~~~~GKstli~~~~~~   46 (205)
                      -=+++|+|+.|+|||||++.+.+-
T Consensus        29 Ge~vaIvG~sGsGKSTLl~ll~gl   52 (241)
T d2pmka1          29 GEVIGIVGRSGSGKSTLTKLIQRF   52 (241)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhc
Confidence            347999999999999999877764

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.04  E-value=0.00017  Score=49.86  Aligned_cols=23  Identities=35%  Similarity=0.289  Sum_probs=19.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENK   47 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~   47 (205)
                      .++++|+.|+|||||++.+.+-.
T Consensus        29 i~~l~G~NGsGKSTLl~~i~gl~   51 (200)
T d1sgwa_          29 VVNFHGPNGIGKTTLLKTISTYL   51 (200)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCChHHHHHHHHhccc
Confidence            57899999999999999887644

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.03  E-value=0.00016  Score=48.98  Aligned_cols=21  Identities=29%  Similarity=0.368  Sum_probs=17.1

Q ss_pred             eEEE-EECCCCCCHHHHHHHHh
Q psy15714         24 LKVT-TVGDGMVGKTCLLITHT   44 (205)
Q Consensus        24 ~ki~-v~G~~~~GKstli~~~~   44 (205)
                      +||+ |.|.+||||||+++.+.
T Consensus         1 mkiivi~G~~GsGKTT~~~~La   22 (194)
T d1nksa_           1 MKIGIVTGIPGVGKSTVLAKVK   22 (194)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            3565 57999999999997775

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.03  E-value=0.00017  Score=49.14  Aligned_cols=21  Identities=24%  Similarity=0.286  Sum_probs=18.9

Q ss_pred             EEEECCCCCCHHHHHHHHhcC
Q psy15714         26 VTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        26 i~v~G~~~~GKstli~~~~~~   46 (205)
                      |+|+|++||||+||++++...
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~   24 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            799999999999999988754

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.03  E-value=0.00015  Score=48.25  Aligned_cols=21  Identities=19%  Similarity=0.170  Sum_probs=17.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q psy15714         25 KVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~   45 (205)
                      +|+++|++||||||+.+.+..
T Consensus         2 ~I~liG~~GsGKsTi~k~La~   22 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAK   22 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999876653

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.00  E-value=0.00025  Score=51.53  Aligned_cols=61  Identities=25%  Similarity=0.154  Sum_probs=37.8

Q ss_pred             eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEE------ECCEEEEEEEEEcCCCcc
Q psy15714         22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTIT------VDNKTYDVTLWDTAGQED   83 (205)
Q Consensus        22 ~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~------~~~~~~~~~i~D~~g~~~   83 (205)
                      +-.=|.|+|+.++|||+|+|.+++....-...++.... ++-++      .++....+.++|+.|-..
T Consensus        31 ~v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~-T~Giw~~~~~~~~~~~~~~~~lDteG~~~   97 (277)
T d1f5na2          31 PMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSH-TKGIWMWCVPHPKKPGHILVLLDTEGLGD   97 (277)
T ss_dssp             BEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCC-CCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred             CEEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCC-CCceEEEEeeccCCCCceEEEEecccccc
Confidence            35578899999999999999999866422111111111 11122      133445688899999654

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.00  E-value=0.00019  Score=48.66  Aligned_cols=21  Identities=29%  Similarity=0.373  Sum_probs=18.5

Q ss_pred             EEEECCCCCCHHHHHHHHhcC
Q psy15714         26 VTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        26 i~v~G~~~~GKstli~~~~~~   46 (205)
                      |+++|++|||||||++.+...
T Consensus         5 ivl~GpsG~GK~tl~~~L~~~   25 (182)
T d1znwa1           5 VVLSGPSAVGKSTVVRCLRER   25 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            679999999999999888754

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.98  E-value=0.0002  Score=47.81  Aligned_cols=21  Identities=14%  Similarity=0.098  Sum_probs=18.1

Q ss_pred             EEEECCCCCCHHHHHHHHhcC
Q psy15714         26 VTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        26 i~v~G~~~~GKstli~~~~~~   46 (205)
                      |++.|++||||||+.+.+...
T Consensus         7 I~l~G~~GsGKSTia~~La~~   27 (176)
T d1zp6a1           7 LLLSGHPGSGKSTIAEALANL   27 (176)
T ss_dssp             EEEEECTTSCHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            778999999999999877653

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=96.95  E-value=0.00024  Score=50.55  Aligned_cols=24  Identities=13%  Similarity=0.063  Sum_probs=20.3

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcC
Q psy15714         23 ALKVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        23 ~~ki~v~G~~~~GKstli~~~~~~   46 (205)
                      -=+++++|+.|+|||||++.+.+-
T Consensus        28 Ge~vaivG~sGsGKSTLl~ll~gl   51 (242)
T d1mv5a_          28 NSIIAFAGPSGGGKSTIFSLLERF   51 (242)
T ss_dssp             TEEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHh
Confidence            347899999999999999877653

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=96.95  E-value=0.00023  Score=47.52  Aligned_cols=21  Identities=14%  Similarity=0.191  Sum_probs=17.5

Q ss_pred             EEEECCCCCCHHHHHHHHhcC
Q psy15714         26 VTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        26 i~v~G~~~~GKstli~~~~~~   46 (205)
                      |++.|++||||||+.+.+...
T Consensus         6 I~l~G~~GsGKsTva~~L~~~   26 (178)
T d1qhxa_           6 IILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            556699999999999887753

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.95  E-value=0.00024  Score=50.15  Aligned_cols=22  Identities=32%  Similarity=0.221  Sum_probs=19.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~   46 (205)
                      .++++|+.|+|||||++.+.+-
T Consensus        28 i~~liGpsGsGKSTLl~~i~Gl   49 (232)
T d2awna2          28 FVVFVGPSGCGKSTLLRMIAGL   49 (232)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHhcC
Confidence            5799999999999999977664

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.91  E-value=0.00027  Score=49.27  Aligned_cols=24  Identities=17%  Similarity=0.288  Sum_probs=20.7

Q ss_pred             eeeEEEEECCCCCCHHHHHHHHhc
Q psy15714         22 KALKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        22 ~~~ki~v~G~~~~GKstli~~~~~   45 (205)
                      +.++|+|-|++||||||+.+.+..
T Consensus         2 k~i~IaIdGp~GsGKgT~ak~La~   25 (223)
T d1q3ta_           2 KTIQIAIDGPASSGKSTVAKIIAK   25 (223)
T ss_dssp             CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            567899999999999999977764

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.91  E-value=0.00033  Score=47.62  Aligned_cols=25  Identities=24%  Similarity=0.141  Sum_probs=21.4

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhc
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~   45 (205)
                      ..++-|+|.|++|||||||.+++..
T Consensus        20 ~~~~iIgI~G~~GSGKSTla~~L~~   44 (198)
T d1rz3a_          20 AGRLVLGIDGLSRSGKTTLANQLSQ   44 (198)
T ss_dssp             SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            4567799999999999999988764

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.90  E-value=0.00027  Score=50.04  Aligned_cols=23  Identities=17%  Similarity=0.092  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENK   47 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~   47 (205)
                      .++++|+.|+|||||++.+.+-.
T Consensus        26 ~~~liGpnGaGKSTll~~i~Gl~   48 (240)
T d2onka1          26 YCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            46799999999999999887754

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.89  E-value=0.00028  Score=50.48  Aligned_cols=23  Identities=17%  Similarity=0.079  Sum_probs=19.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~   46 (205)
                      =+++|+|+.|+|||||++.+.+-
T Consensus        41 e~vaivG~sGsGKSTLl~li~gl   63 (251)
T d1jj7a_          41 EVTALVGPNGSGKSTVAALLQNL   63 (251)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CEEEEECCCCCcHHHHHHHHhcc
Confidence            47899999999999999877654

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.88  E-value=0.00032  Score=47.97  Aligned_cols=29  Identities=21%  Similarity=0.138  Sum_probs=24.3

Q ss_pred             cccceeeEEEEECCCCCCHHHHHHHHhcC
Q psy15714         18 KSVHKALKVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        18 ~~~~~~~ki~v~G~~~~GKstli~~~~~~   46 (205)
                      ....+++-|+|-|..||||||+++.+...
T Consensus         4 ~~~~kp~~I~ieG~~GsGKTTl~~~L~~~   32 (197)
T d2vp4a1           4 AEGTQPFTVLIEGNIGSGKTTYLNHFEKY   32 (197)
T ss_dssp             TTTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             cCCCCceEEEEECCCCCCHHHHHHHHHHH
Confidence            34567789999999999999999887653

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.88  E-value=0.00027  Score=50.67  Aligned_cols=23  Identities=26%  Similarity=0.193  Sum_probs=19.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~   46 (205)
                      =+++|+|+.|+|||||++.+.+-
T Consensus        42 e~iaivG~sGsGKSTLl~ll~gl   64 (253)
T d3b60a1          42 KTVALVGRSGSGKSTIASLITRF   64 (253)
T ss_dssp             CEEEEEECTTSSHHHHHHHHTTT
T ss_pred             CEEEEECCCCChHHHHHHHHhcc
Confidence            37999999999999999877653

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.87  E-value=0.0003  Score=49.82  Aligned_cols=23  Identities=22%  Similarity=0.134  Sum_probs=20.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENK   47 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~   47 (205)
                      .++++|+.|+|||||++.+.+-.
T Consensus        34 ~~~liGpsGaGKSTLl~~i~Gl~   56 (239)
T d1v43a3          34 FLVLLGPSGCGKTTTLRMIAGLE   56 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            57999999999999999777654

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.86  E-value=0.00031  Score=47.56  Aligned_cols=21  Identities=19%  Similarity=0.216  Sum_probs=18.9

Q ss_pred             EEEECCCCCCHHHHHHHHhcC
Q psy15714         26 VTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        26 i~v~G~~~~GKstli~~~~~~   46 (205)
                      |+++||+|+||+||++++...
T Consensus         6 ivl~Gpsg~GK~tl~~~L~~~   26 (178)
T d1kgda_           6 LVLLGAHGVGRRHIKNTLITK   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            889999999999999998753

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.86  E-value=0.00028  Score=49.69  Aligned_cols=22  Identities=23%  Similarity=0.143  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~   46 (205)
                      .++++|+.|+|||||++.+.+-
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~gl   54 (230)
T d1l2ta_          33 FVSIMGPSGSGKSTMLNIIGCL   54 (230)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCcchhhHhccCC
Confidence            5799999999999999866654

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.86  E-value=0.00026  Score=48.47  Aligned_cols=22  Identities=18%  Similarity=0.043  Sum_probs=19.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHhc
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~   45 (205)
                      --|+++|+|||||||+..++..
T Consensus         9 ~iI~l~G~pGSGKsT~a~~La~   30 (194)
T d3adka_           9 KIIFVVGGPGSGKGTQCEKIVQ   30 (194)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            3488999999999999988865

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.85  E-value=0.00029  Score=51.27  Aligned_cols=22  Identities=27%  Similarity=0.306  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~   46 (205)
                      .++|+|+.|+|||||++.+.+-
T Consensus        64 ~vaivG~nGsGKSTLl~~i~Gl   85 (281)
T d1r0wa_          64 MLAITGSTGSGKTSLLMLILGE   85 (281)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHhCC
Confidence            6899999999999999988763

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.85  E-value=0.00037  Score=49.95  Aligned_cols=23  Identities=26%  Similarity=0.104  Sum_probs=19.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~   46 (205)
                      --|++.|+||+|||||++++...
T Consensus        33 ~~ilL~GpPGtGKT~la~~la~~   55 (273)
T d1gvnb_          33 TAFLLGGQPGSGKTSLRSAIFEE   55 (273)
T ss_dssp             EEEEEECCTTSCTHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHH
Confidence            34899999999999999888764

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.85  E-value=0.00031  Score=48.03  Aligned_cols=20  Identities=30%  Similarity=0.308  Sum_probs=18.0

Q ss_pred             EEEECCCCCCHHHHHHHHhc
Q psy15714         26 VTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        26 i~v~G~~~~GKstli~~~~~   45 (205)
                      |+|+|++|||||||.+++..
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~   22 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQ   22 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999988764

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=96.85  E-value=0.00031  Score=46.98  Aligned_cols=19  Identities=21%  Similarity=0.113  Sum_probs=16.8

Q ss_pred             EEEECCCCCCHHHHHHHHh
Q psy15714         26 VTTVGDGMVGKTCLLITHT   44 (205)
Q Consensus        26 i~v~G~~~~GKstli~~~~   44 (205)
                      |+++|++||||||+.+.+.
T Consensus         5 Iil~G~~GsGKSTia~~LA   23 (170)
T d1e6ca_           5 IFMVGARGCGMTTVGRELA   23 (170)
T ss_dssp             EEEESCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            7789999999999987775

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=96.82  E-value=0.00031  Score=49.88  Aligned_cols=23  Identities=30%  Similarity=0.221  Sum_probs=20.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENK   47 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~   47 (205)
                      -++++|+.|+|||||++.+.+-.
T Consensus        34 i~~liGpnGaGKSTl~~~i~Gl~   56 (240)
T d1ji0a_          34 IVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            57999999999999999887754

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.81  E-value=0.0002  Score=48.72  Aligned_cols=24  Identities=25%  Similarity=0.227  Sum_probs=20.2

Q ss_pred             eeeEEEEECCCCCCHHHHHHHHhc
Q psy15714         22 KALKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        22 ~~~ki~v~G~~~~GKstli~~~~~   45 (205)
                      +..-|+++|.+||||||+.+.+..
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~   41 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEE   41 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            456788999999999999987754

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.80  E-value=0.0014  Score=46.29  Aligned_cols=22  Identities=18%  Similarity=0.178  Sum_probs=19.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~   46 (205)
                      .+++.|++|+||||+++.+...
T Consensus        35 ~lll~Gp~G~GKTt~~~~la~~   56 (252)
T d1sxje2          35 HLLLYGPNGTGKKTRCMALLES   56 (252)
T ss_dssp             CEEEECSTTSSHHHHHHTHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHh
Confidence            5899999999999999877653

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=96.78  E-value=0.00049  Score=51.05  Aligned_cols=25  Identities=24%  Similarity=0.114  Sum_probs=21.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCC
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTENKF   48 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~~~   48 (205)
                      .+|+|.|+.|+|||||++++...-.
T Consensus       167 ~nili~G~tgSGKTT~l~al~~~i~  191 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIMEFIP  191 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred             CCEEEEeeccccchHHHHHHhhhcc
Confidence            3599999999999999999987543

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.78  E-value=0.00038  Score=48.20  Aligned_cols=21  Identities=14%  Similarity=0.153  Sum_probs=18.7

Q ss_pred             EEEECCCCCCHHHHHHHHhcC
Q psy15714         26 VTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        26 i~v~G~~~~GKstli~~~~~~   46 (205)
                      |+|+||+|||||||++++...
T Consensus         5 ivi~GPSG~GK~tl~~~L~~~   25 (205)
T d1s96a_           5 YIVSAPSGAGKSSLIQALLKT   25 (205)
T ss_dssp             EEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            689999999999999988753

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=96.77  E-value=0.00038  Score=49.30  Aligned_cols=23  Identities=22%  Similarity=0.122  Sum_probs=20.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENK   47 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~   47 (205)
                      .+.++|+.|+|||||++.+.+-.
T Consensus        31 ~~~liG~sGaGKSTll~~i~gl~   53 (240)
T d1g2912          31 FMILLGPSGCGKTTTLRMIAGLE   53 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            68999999999999999877654

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=96.75  E-value=0.00039  Score=49.14  Aligned_cols=23  Identities=22%  Similarity=0.173  Sum_probs=19.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~   46 (205)
                      -.+++.|+||+||||+++.+...
T Consensus        36 ~~~Ll~GPpG~GKTtla~~la~~   58 (239)
T d1ixsb2          36 EHLLLFGPPGLGKTTLAHVIAHE   58 (239)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999888653

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=96.75  E-value=0.0004  Score=49.25  Aligned_cols=23  Identities=22%  Similarity=0.107  Sum_probs=20.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENK   47 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~   47 (205)
                      -+.++|+.|+|||||++.+.+-.
T Consensus        30 i~glvG~nGaGKSTLl~~l~G~~   52 (238)
T d1vpla_          30 IFGLIGPNGAGKTTTLRIISTLI   52 (238)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57899999999999999887764

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=96.75  E-value=0.00028  Score=49.85  Aligned_cols=21  Identities=29%  Similarity=0.330  Sum_probs=19.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q psy15714         25 KVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~   45 (205)
                      -++++|+.|+|||||++.+.+
T Consensus        27 i~~iiG~nGaGKSTLl~~l~G   47 (231)
T d1l7vc_          27 ILHLVGPNGAGKSTLLARMAG   47 (231)
T ss_dssp             EEECBCCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCcHHHHHHHHhC
Confidence            579999999999999998887

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=96.74  E-value=0.00025  Score=49.93  Aligned_cols=23  Identities=22%  Similarity=0.125  Sum_probs=20.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENK   47 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~   47 (205)
                      -++++|+.|+|||||++.+.+-.
T Consensus        28 ~~~liGpsGaGKSTll~~l~Gl~   50 (229)
T d3d31a2          28 YFVILGPTGAGKTLFLELIAGFH   50 (229)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Confidence            57999999999999999888754

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.72  E-value=0.00041  Score=48.91  Aligned_cols=23  Identities=26%  Similarity=0.167  Sum_probs=19.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~   46 (205)
                      ..+++.|+||+||||+++.+...
T Consensus        36 ~~~L~~GPpGtGKT~lA~~la~~   58 (238)
T d1in4a2          36 DHVLLAGPPGLGKTTLAHIIASE   58 (238)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHhc
Confidence            36899999999999999887653

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=96.69  E-value=0.0004  Score=49.19  Aligned_cols=22  Identities=18%  Similarity=0.146  Sum_probs=19.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~   46 (205)
                      .+.++|+.|+|||||++.+.+-
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~Gl   54 (240)
T d3dhwc1          33 IYGVIGASGAGKSTLIRCVNLL   54 (240)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHcCC
Confidence            5799999999999999877664

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=96.64  E-value=0.0017  Score=42.73  Aligned_cols=26  Identities=35%  Similarity=0.218  Sum_probs=21.5

Q ss_pred             eeeEEEEECCCCCCHHHHHHHHhcCC
Q psy15714         22 KALKVTTVGDGMVGKTCLLITHTENK   47 (205)
Q Consensus        22 ~~~ki~v~G~~~~GKstli~~~~~~~   47 (205)
                      ...-|++-|+-|||||||++.+..+-
T Consensus        32 ~g~ii~L~G~LGaGKTtfvr~~~~~l   57 (158)
T d1htwa_          32 KAIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCeEEEEecCCCccHHHHHHHHHhhc
Confidence            34568899999999999999888653

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.63  E-value=0.00062  Score=46.55  Aligned_cols=24  Identities=21%  Similarity=0.267  Sum_probs=19.6

Q ss_pred             eeeEEEEECCCCCCHHHHHHHHhc
Q psy15714         22 KALKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        22 ~~~ki~v~G~~~~GKstli~~~~~   45 (205)
                      ..-+++++|+||+|||++++.+..
T Consensus        42 ~k~n~lLvG~pGVGKTalv~~LA~   65 (195)
T d1jbka_          42 TKNNPVLIGEPGVGKTAIVEGLAQ   65 (195)
T ss_dssp             SSCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCCeEEEecCCcccHHHHHHHHH
Confidence            445789999999999999965554

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.63  E-value=0.00032  Score=50.22  Aligned_cols=23  Identities=26%  Similarity=0.176  Sum_probs=19.1

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhc
Q psy15714         23 ALKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        23 ~~ki~v~G~~~~GKstli~~~~~   45 (205)
                      -=+++|+|+.|+|||||++.+.+
T Consensus        44 Ge~vaivG~sGsGKSTLl~ll~g   66 (255)
T d2hyda1          44 GETVAFVGMSGGGKSTLINLIPR   66 (255)
T ss_dssp             TCEEEEECSTTSSHHHHHTTTTT
T ss_pred             CCEEEEECCCCCcHHHHHHHHHh
Confidence            34789999999999999975554

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.63  E-value=0.00053  Score=49.12  Aligned_cols=23  Identities=22%  Similarity=0.153  Sum_probs=20.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENK   47 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~   47 (205)
                      -++++|+.|+|||||++.+.+-.
T Consensus        32 i~~liG~nGaGKSTLl~~i~Gl~   54 (254)
T d1g6ha_          32 VTLIIGPNGSGKSTLINVITGFL   54 (254)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Confidence            47999999999999999888764

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.55  E-value=0.00064  Score=48.72  Aligned_cols=22  Identities=18%  Similarity=0.209  Sum_probs=19.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~   46 (205)
                      .++++|+.|+|||||++.+.+-
T Consensus        30 i~~iiG~sGsGKSTLl~~i~Gl   51 (258)
T d1b0ua_          30 VISIIGSSGSGKSTFLRCINFL   51 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHHcC
Confidence            6799999999999999988754

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.53  E-value=0.00083  Score=46.48  Aligned_cols=23  Identities=13%  Similarity=0.228  Sum_probs=19.9

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhc
Q psy15714         23 ALKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        23 ~~ki~v~G~~~~GKstli~~~~~   45 (205)
                      ++-|+|.|+.|||||||.+++..
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~   24 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQ   24 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            46789999999999999987754

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.52  E-value=0.00078  Score=47.22  Aligned_cols=21  Identities=24%  Similarity=0.241  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q psy15714         25 KVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~   45 (205)
                      .+++.|++|+||||+++.+..
T Consensus        47 ~lll~Gp~G~GKTtla~~iak   67 (231)
T d1iqpa2          47 HLLFAGPPGVGKTTAALALAR   67 (231)
T ss_dssp             EEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            589999999999999987765

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.47  E-value=0.00083  Score=47.65  Aligned_cols=23  Identities=17%  Similarity=0.082  Sum_probs=20.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~   46 (205)
                      -.+++.|+||+||||+++++...
T Consensus        53 ~~lll~GPpG~GKTt~a~~la~~   75 (253)
T d1sxja2          53 RAAMLYGPPGIGKTTAAHLVAQE   75 (253)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999999988764

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.47  E-value=0.00085  Score=48.31  Aligned_cols=25  Identities=24%  Similarity=0.193  Sum_probs=20.1

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhc
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~   45 (205)
                      ...-+++++|+||+|||++++.+..
T Consensus        37 ~~k~n~lLVG~~GvGKTalv~~la~   61 (268)
T d1r6bx2          37 RRKNNPLLVGESGVGKTAIAEGLAW   61 (268)
T ss_dssp             SSSCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CccCCcEEECCCCCcHHHHHHHHHH
Confidence            3445899999999999999866554

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.44  E-value=0.00041  Score=49.15  Aligned_cols=23  Identities=17%  Similarity=0.212  Sum_probs=20.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENK   47 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~   47 (205)
                      .++++|+.|+|||||++.+.+-.
T Consensus        33 ~~~iiG~sGsGKSTll~~i~gl~   55 (242)
T d1oxxk2          33 RFGILGPSGAGKTTFMRIIAGLD   55 (242)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCc
Confidence            68999999999999999887744

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.44  E-value=0.0009  Score=47.69  Aligned_cols=24  Identities=29%  Similarity=0.147  Sum_probs=20.4

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcC
Q psy15714         23 ALKVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        23 ~~ki~v~G~~~~GKstli~~~~~~   46 (205)
                      .-.+++.|++|+|||++++.+...
T Consensus        43 ~~~lll~GppGtGKT~l~~~l~~~   66 (276)
T d1fnna2          43 YPRATLLGRPGTGKTVTLRKLWEL   66 (276)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHH
Confidence            357999999999999999877653

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=96.41  E-value=0.0013  Score=45.70  Aligned_cols=25  Identities=20%  Similarity=0.103  Sum_probs=20.2

Q ss_pred             cceeeEEEEECCCCCCHHHHHHHHh
Q psy15714         20 VHKALKVTTVGDGMVGKTCLLITHT   44 (205)
Q Consensus        20 ~~~~~ki~v~G~~~~GKstli~~~~   44 (205)
                      +.++.-|+++|++|+||||.+-++.
T Consensus         8 ~~~p~vi~lvGptGvGKTTTiAKLA   32 (213)
T d1vmaa2           8 PEPPFVIMVVGVNGTGKTTSCGKLA   32 (213)
T ss_dssp             SSSCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHH
Confidence            4566788999999999999975544

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.38  E-value=0.0014  Score=46.67  Aligned_cols=23  Identities=30%  Similarity=0.270  Sum_probs=20.1

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhc
Q psy15714         23 ALKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        23 ~~ki~v~G~~~~GKstli~~~~~   45 (205)
                      ...|++.|+||+|||++++++..
T Consensus        40 ~~~vLL~GppGtGKT~la~alA~   62 (246)
T d1d2na_          40 LVSVLLEGPPHSGKTALAAKIAE   62 (246)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEECcCCCCHHHHHHHHhh
Confidence            34699999999999999988864

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.37  E-value=0.00093  Score=49.21  Aligned_cols=23  Identities=22%  Similarity=0.189  Sum_probs=19.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~   46 (205)
                      --++++||||+|||.|.+++...
T Consensus        50 ~~iLl~GPpG~GKT~lAkalA~~   72 (309)
T d1ofha_          50 KNILMIGPTGVGKTEIARRLAKL   72 (309)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHhhc
Confidence            45899999999999999888753

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=96.29  E-value=0.0017  Score=44.00  Aligned_cols=25  Identities=12%  Similarity=0.090  Sum_probs=21.3

Q ss_pred             eeeEEEEECCCCCCHHHHHHHHhcC
Q psy15714         22 KALKVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        22 ~~~ki~v~G~~~~GKstli~~~~~~   46 (205)
                      .++-|+|.|.+||||||+.+.|...
T Consensus         2 ~p~IIgitG~~gSGKstva~~l~~~   26 (191)
T d1uf9a_           2 HPIIIGITGNIGSGKSTVAALLRSW   26 (191)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHC
Confidence            3578999999999999999887654

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.28  E-value=0.001  Score=47.63  Aligned_cols=21  Identities=24%  Similarity=0.264  Sum_probs=17.1

Q ss_pred             EEEECCCCCCHHHHHHHHhcC
Q psy15714         26 VTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        26 i~v~G~~~~GKstli~~~~~~   46 (205)
                      +++.|+||+|||++++.+...
T Consensus        49 l~l~GppGtGKT~l~~~l~~~   69 (287)
T d1w5sa2          49 YGSIGRVGIGKTTLAKFTVKR   69 (287)
T ss_dssp             EECTTCCSSSHHHHHHHHHHH
T ss_pred             EEeECCCCCCHHHHHHHHHHH
Confidence            455699999999999887753

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=96.22  E-value=0.0019  Score=44.76  Aligned_cols=92  Identities=15%  Similarity=0.023  Sum_probs=50.0

Q ss_pred             EEEEEEEcCCCcccccc------cccC--cCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccC
Q psy15714         71 YDVTLWDTAGQEDYERL------RPMS--YPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSE  142 (205)
Q Consensus        71 ~~~~i~D~~g~~~~~~~------~~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  142 (205)
                      +.+.++||+|...+...      ...+  .-..+-+++|.+++.......   .........  + +--++.||.|....
T Consensus        95 ~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~~~---~~~~~~~~~--~-~~~lI~TKlDet~~  168 (211)
T d1j8yf2          95 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYD---LASKFNQAS--K-IGTIIITKMDGTAK  168 (211)
T ss_dssp             CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHH---HHHHHHHHC--T-TEEEEEECTTSCSC
T ss_pred             CceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCcchHH---HHhhhhccc--C-cceEEEecccCCCc
Confidence            46889999996443310      0111  123567888888876543222   222222221  2 23477999997543


Q ss_pred             chhhhhhhhhccccccHHHHHHHHHHcCCceEEEcccCCCCCHHH
Q psy15714        143 NKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLECSAKLNEGLDQ  187 (205)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  187 (205)
                                      .-.+.+++...+.+ +..++  .|.++++
T Consensus       169 ----------------~G~~l~~~~~~~lP-i~~it--~Gq~v~D  194 (211)
T d1j8yf2         169 ----------------GGGALSAVAATGAT-IKFIG--TGEKIDE  194 (211)
T ss_dssp             ----------------HHHHHHHHHTTTCC-EEEEE--CSSSTTC
T ss_pred             ----------------ccHHHHHHHHHCcC-EEEEe--CCCCccc
Confidence                            23455666667766 44444  3555543

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=96.21  E-value=0.0013  Score=46.76  Aligned_cols=21  Identities=38%  Similarity=0.273  Sum_probs=19.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q psy15714         25 KVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~   45 (205)
                      -|++.|+||+|||+|++++..
T Consensus        44 giLl~GppGtGKT~la~aia~   64 (247)
T d1ixza_          44 GVLLVGPPGVGKTHLARAVAG   64 (247)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEecCCCCChhHHHHHHHH
Confidence            589999999999999998885

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.21  E-value=0.0017  Score=44.89  Aligned_cols=29  Identities=17%  Similarity=0.218  Sum_probs=23.7

Q ss_pred             ccccceeeEEEEECCCCCCHHHHHHHHhc
Q psy15714         17 SKSVHKALKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        17 ~~~~~~~~ki~v~G~~~~GKstli~~~~~   45 (205)
                      +....+.+-|.+.|.+|||||||.+.+..
T Consensus        18 ~~~~~kg~vIwltGlsGsGKTTia~~L~~   46 (208)
T d1m7ga_          18 ELRNQRGLTIWLTGLSASGKSTLAVELEH   46 (208)
T ss_dssp             HHHTSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             HHhCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            34556677899999999999999987764

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.20  E-value=0.0012  Score=47.13  Aligned_cols=21  Identities=14%  Similarity=0.184  Sum_probs=18.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q psy15714         25 KVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~   45 (205)
                      .++|.|++|+|||||++++..
T Consensus        31 ~i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          31 ITLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHH
Confidence            578999999999999988764

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=96.18  E-value=0.0014  Score=45.29  Aligned_cols=21  Identities=29%  Similarity=0.246  Sum_probs=17.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q psy15714         25 KVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~   45 (205)
                      =|+|.|+|||||+|+...+..
T Consensus         5 iI~I~GppGSGKgT~ak~La~   25 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAE   25 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            467779999999999876664

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.17  E-value=0.0014  Score=45.89  Aligned_cols=21  Identities=24%  Similarity=0.279  Sum_probs=18.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q psy15714         25 KVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~   45 (205)
                      .+++.|++|+||||+++.+..
T Consensus        35 ~lll~Gp~G~GKTtl~~~i~~   55 (237)
T d1sxjd2          35 HMLFYGPPGTGKTSTILALTK   55 (237)
T ss_dssp             CEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCChHHHHHHHHH
Confidence            489999999999999987765

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.08  E-value=0.0017  Score=45.26  Aligned_cols=21  Identities=19%  Similarity=0.153  Sum_probs=18.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q psy15714         25 KVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~   45 (205)
                      .+++.|++|+||||+++.+..
T Consensus        38 ~~ll~Gp~G~GKTt~a~~la~   58 (224)
T d1sxjb2          38 HMIISGMPGIGKTTSVHCLAH   58 (224)
T ss_dssp             CEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCchhhHHHHHH
Confidence            589999999999999977654

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.07  E-value=0.0019  Score=44.32  Aligned_cols=22  Identities=18%  Similarity=0.205  Sum_probs=18.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHhc
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~   45 (205)
                      +-|+|-|..||||||+++.+..
T Consensus         1 mlI~ieG~dGsGKST~~~~L~~   22 (208)
T d1gsia_           1 MLIAIEGVDGAGKRTLVEKLSG   22 (208)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3589999999999999976653

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.05  E-value=0.0017  Score=45.22  Aligned_cols=22  Identities=18%  Similarity=0.247  Sum_probs=19.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~   46 (205)
                      .+++.|++|+||||+++.+...
T Consensus        37 ~lLl~Gp~G~GKttl~~~la~~   58 (227)
T d1sxjc2          37 HLLFYGPPGTGKTSTIVALARE   58 (227)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHHHH
Confidence            4899999999999999888753

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=96.05  E-value=0.0024  Score=44.11  Aligned_cols=23  Identities=26%  Similarity=0.239  Sum_probs=18.7

Q ss_pred             eeeEEEEECCCCCCHHHHHHHHh
Q psy15714         22 KALKVTTVGDGMVGKTCLLITHT   44 (205)
Q Consensus        22 ~~~ki~v~G~~~~GKstli~~~~   44 (205)
                      .+.-|+++|++|+||||.+-++.
T Consensus         8 ~p~vi~lvGptGvGKTTTiAKLA   30 (211)
T d2qy9a2           8 APFVILMVGVNGVGKTTTIGKLA   30 (211)
T ss_dssp             TTEEEEEECCTTSCHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHH
Confidence            34568899999999999986654

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.01  E-value=0.0019  Score=46.22  Aligned_cols=22  Identities=18%  Similarity=0.155  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~   46 (205)
                      -+++.|+||+|||++++++...
T Consensus        40 giLL~GppGtGKT~l~~ala~~   61 (258)
T d1e32a2          40 GILLYGPPGTGKTLIARAVANE   61 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eeEEecCCCCCchHHHHHHHHH
Confidence            5899999999999999888764

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=96.00  E-value=0.0019  Score=46.14  Aligned_cols=22  Identities=32%  Similarity=0.187  Sum_probs=19.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHhc
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~   45 (205)
                      -.+++.|+||+|||++++++..
T Consensus        46 ~~iLL~GppGtGKT~la~~iA~   67 (256)
T d1lv7a_          46 KGVLMVGPPGTGKTLLAKAIAG   67 (256)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEeeCCCCCCccHHHHHHHH
Confidence            3589999999999999988875

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=96.00  E-value=0.002  Score=44.51  Aligned_cols=64  Identities=19%  Similarity=0.126  Sum_probs=36.2

Q ss_pred             EEEEEEEcCCCcccccc----cccC--------cCCCcEEEEEEECCCcch-HHHHHHHHHHHHhhhCCCCCEEEEeeCc
Q psy15714         71 YDVTLWDTAGQEDYERL----RPMS--------YPNTDCFLLCFSIGSTSS-YENILSKWYPELKHHCPKVPIILVGTKA  137 (205)
Q Consensus        71 ~~~~i~D~~g~~~~~~~----~~~~--------~~~~~~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~p~ivv~nK~  137 (205)
                      +.+.++||+|...+...    ...+        ....+-+++|.|++.... ...+. .....+     + +--++.||.
T Consensus        89 ~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~-~~~~~~-----~-~~~lI~TKl  161 (207)
T d1okkd2          89 YDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAK-KFHEAV-----G-LTGVIVTKL  161 (207)
T ss_dssp             CSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHH-HHHHHH-----C-CSEEEEECT
T ss_pred             CCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchHHHHHH-Hhhhcc-----C-CceEEEecc
Confidence            46889999996543321    0001        124577888999876543 22222 222222     2 225789999


Q ss_pred             cccc
Q psy15714        138 DLRS  141 (205)
Q Consensus       138 Dl~~  141 (205)
                      |...
T Consensus       162 Det~  165 (207)
T d1okkd2         162 DGTA  165 (207)
T ss_dssp             TSSC
T ss_pred             CCCC
Confidence            9754

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=95.92  E-value=0.0027  Score=46.57  Aligned_cols=25  Identities=16%  Similarity=0.133  Sum_probs=21.4

Q ss_pred             cceeeEEEEECCCCCCHHHHHHHHh
Q psy15714         20 VHKALKVTTVGDGMVGKTCLLITHT   44 (205)
Q Consensus        20 ~~~~~ki~v~G~~~~GKstli~~~~   44 (205)
                      ...++-|+|.|++|||||||.+.+.
T Consensus        77 ~k~P~iIGIaG~sgSGKSTla~~L~  101 (308)
T d1sq5a_          77 QRIPYIISIAGSVAVGKSTTARVLQ  101 (308)
T ss_dssp             CCCCEEEEEEECTTSSHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCCCCcHHHHHHH
Confidence            4567999999999999999986654

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.88  E-value=0.0028  Score=44.63  Aligned_cols=21  Identities=24%  Similarity=0.156  Sum_probs=17.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q psy15714         25 KVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~   45 (205)
                      -+++.|++|+||||+++.+..
T Consensus        36 ~~Ll~Gp~G~GKtt~a~~~~~   56 (239)
T d1njfa_          36 AYLFSGTRGVGKTSIARLLAK   56 (239)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            378999999999999977654

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=95.88  E-value=0.0024  Score=44.05  Aligned_cols=84  Identities=18%  Similarity=0.083  Sum_probs=46.2

Q ss_pred             EEEEEEEcCCCccccccc----c--cCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCch
Q psy15714         71 YDVTLWDTAGQEDYERLR----P--MSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENK  144 (205)
Q Consensus        71 ~~~~i~D~~g~~~~~~~~----~--~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~  144 (205)
                      +.+.++||+|...+....    .  ....+.+-+++|.|++......+....+...+     + +--+++||.|....  
T Consensus        93 ~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~~~~~~f~~~~-----~-~~~~I~TKlDe~~~--  164 (207)
T d1ls1a2          93 RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKV-----G-VTGLVLTKLDGDAR--  164 (207)
T ss_dssp             CCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHHHHHHHT-----C-CCEEEEECGGGCSS--
T ss_pred             CcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchhHHHHHHHHHhhC-----C-CCeeEEeecCcccc--
Confidence            468899999965433211    1  11234678899999876643322221222212     1 22488999996443  


Q ss_pred             hhhhhhhhccccccHHHHHHHHHHcCCceEEEc
Q psy15714        145 TIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLEC  177 (205)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (205)
                                    .-.+..++...+.+ +..+
T Consensus       165 --------------~G~~l~~~~~~~~P-i~~i  182 (207)
T d1ls1a2         165 --------------GGAALSARHVTGKP-IYFA  182 (207)
T ss_dssp             --------------CHHHHHHHHHHCCC-EEEE
T ss_pred             --------------chHHHHHHHHHCCC-EEEE
Confidence                          23445566666766 4343

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.76  E-value=0.0041  Score=45.00  Aligned_cols=25  Identities=20%  Similarity=0.056  Sum_probs=20.6

Q ss_pred             ccceeeEEEEECCCCCCHHHHHHHH
Q psy15714         19 SVHKALKVTTVGDGMVGKTCLLITH   43 (205)
Q Consensus        19 ~~~~~~ki~v~G~~~~GKstli~~~   43 (205)
                      ....++-|.|.|.+|+|||||...+
T Consensus        23 ~~~~P~iIGi~G~qGSGKSTl~~~l   47 (286)
T d1odfa_          23 GNKCPLFIFFSGPQGSGKSFTSIQI   47 (286)
T ss_dssp             TCCSCEEEEEECCTTSSHHHHHHHH
T ss_pred             CCCCCEEEEeECCCCCCHHHHHHHH
Confidence            3456789999999999999998654

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.68  E-value=0.0027  Score=45.56  Aligned_cols=24  Identities=25%  Similarity=0.084  Sum_probs=20.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCC
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTENK   47 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~~   47 (205)
                      --|++.|++|+|||+|++++...-
T Consensus        42 ~giLL~Gp~GtGKT~l~~ala~~~   65 (265)
T d1r7ra3          42 KGVLFYGPPGCGKTLLAKAIANEC   65 (265)
T ss_dssp             CEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred             CeEEEECCCCCcchhHHHHHHHHh
Confidence            359999999999999999886543

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.47  E-value=0.0038  Score=42.94  Aligned_cols=20  Identities=25%  Similarity=0.106  Sum_probs=17.2

Q ss_pred             EEEECCCCCCHHHHHHHHhc
Q psy15714         26 VTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        26 i~v~G~~~~GKstli~~~~~   45 (205)
                      |+|-|..||||||+++.+..
T Consensus         5 IviEG~dGsGKsT~~~~L~~   24 (210)
T d4tmka_           5 IVIEGLEGAGKTTARNVVVE   24 (210)
T ss_dssp             EEEEECTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            77889999999999977663

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=95.43  E-value=0.0035  Score=48.38  Aligned_cols=21  Identities=24%  Similarity=0.287  Sum_probs=19.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q psy15714         25 KVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~   45 (205)
                      +|+++||+|+|||-|.+++..
T Consensus        51 NILliGPTGvGKTlLAr~LAk   71 (443)
T d1g41a_          51 NILMIGPTGVGKTEIARRLAK   71 (443)
T ss_dssp             CEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            899999999999999988764

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=95.34  E-value=0.0024  Score=47.31  Aligned_cols=21  Identities=24%  Similarity=0.259  Sum_probs=19.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q psy15714         25 KVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~   45 (205)
                      .+++.|+||+|||+|++++..
T Consensus        30 ~vLl~G~pG~GKT~lar~~~~   50 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTAVRALAA   50 (333)
T ss_dssp             CEEEECCGGGCTTHHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHHH
Confidence            689999999999999998863

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.30  E-value=0.0054  Score=41.85  Aligned_cols=23  Identities=22%  Similarity=0.085  Sum_probs=19.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENK   47 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~   47 (205)
                      =+.|.|+||+|||+|+..+..+.
T Consensus        25 v~~i~G~~GsGKT~l~l~la~~~   47 (242)
T d1n0wa_          25 ITEMFGEFRTGKTQICHTLAVTC   47 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHH
Confidence            46899999999999998777544

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=95.27  E-value=0.0082  Score=41.19  Aligned_cols=25  Identities=16%  Similarity=0.104  Sum_probs=20.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCCC
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTENKF   48 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~~~   48 (205)
                      +-|+|.|..||||||+.+.|....+
T Consensus         4 ~iIgitG~igSGKStv~~~l~~~G~   28 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFADLGI   28 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHTTC
T ss_pred             EEEEEECCCcCCHHHHHHHHHHCCC
Confidence            5688999999999999987765433

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=95.23  E-value=0.0072  Score=40.39  Aligned_cols=23  Identities=26%  Similarity=0.284  Sum_probs=19.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENK   47 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~   47 (205)
                      =|++.|++|+||||+.-.+....
T Consensus        16 gvl~~G~sG~GKStlal~l~~~g   38 (176)
T d1kkma_          16 GVLITGDSGVGKSETALELVQRG   38 (176)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHTT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHcC
Confidence            48999999999999998877654

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=95.23  E-value=0.0032  Score=47.73  Aligned_cols=29  Identities=21%  Similarity=0.321  Sum_probs=21.3

Q ss_pred             ceeeEEEEECCCCCCHHHHHH----HHhcCCCC
Q psy15714         21 HKALKVTTVGDGMVGKTCLLI----THTENKFP   49 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~----~~~~~~~~   49 (205)
                      ...-+++++|+||+|||+++.    ++..+..+
T Consensus        41 ~~k~n~llvG~~GvGKtaiv~~la~~i~~~~vp   73 (387)
T d1qvra2          41 RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVP   73 (387)
T ss_dssp             SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSC
T ss_pred             CCCCCCeEECCCCCCHHHHHHHHHHHHHhCCCC
Confidence            344467999999999999984    45556543

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.18  E-value=0.0056  Score=44.10  Aligned_cols=23  Identities=13%  Similarity=0.112  Sum_probs=19.4

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhc
Q psy15714         23 ALKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        23 ~~ki~v~G~~~~GKstli~~~~~   45 (205)
                      ..-|.|.|.+|+|||||+..+.+
T Consensus        44 ~~~v~I~GmgGiGKTtLA~~v~~   66 (277)
T d2a5yb3          44 SFFLFLHGRAGSGKSVIASQALS   66 (277)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            34578999999999999988764

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.18  E-value=0.0052  Score=42.34  Aligned_cols=21  Identities=19%  Similarity=0.105  Sum_probs=16.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q psy15714         25 KVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~   45 (205)
                      =|+|-|..||||||+++.+..
T Consensus         5 lI~ieG~dGsGKsT~~~~L~~   25 (209)
T d1nn5a_           5 LIVLEGVDRAGKSTQSRKLVE   25 (209)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            377779999999998866543

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=95.18  E-value=0.00099  Score=45.25  Aligned_cols=18  Identities=22%  Similarity=0.296  Sum_probs=16.0

Q ss_pred             EEECCCCCCHHHHHHHHh
Q psy15714         27 TTVGDGMVGKTCLLITHT   44 (205)
Q Consensus        27 ~v~G~~~~GKstli~~~~   44 (205)
                      +|+|+.|+|||||+.++.
T Consensus        28 vi~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          28 TLSGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             HHHSCCSHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            678999999999998765

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=95.11  E-value=0.01  Score=40.52  Aligned_cols=23  Identities=26%  Similarity=0.118  Sum_probs=19.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~   46 (205)
                      +-|+|.|..||||||+.+.|...
T Consensus         3 ~iIgITG~igSGKStv~~~l~~~   25 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFTDL   25 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHC
Confidence            66889999999999999877643

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=95.10  E-value=0.006  Score=45.75  Aligned_cols=21  Identities=29%  Similarity=0.039  Sum_probs=18.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q psy15714         25 KVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~   45 (205)
                      .+++.||||+|||+|...+..
T Consensus       156 ~~~~~g~~~~gk~~~~~~~~~  176 (362)
T d1svma_         156 YWLFKGPIDSGKTTLAAALLE  176 (362)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            789999999999999877653

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.06  E-value=0.0057  Score=42.63  Aligned_cols=23  Identities=22%  Similarity=0.078  Sum_probs=19.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENK   47 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~   47 (205)
                      -++|.|+||+|||+|...+....
T Consensus        36 ~~li~G~pGsGKT~l~lq~~~~~   58 (251)
T d1szpa2          36 ITELFGEFRTGKSQLCHTLAVTC   58 (251)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTTT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Confidence            46899999999999998776543

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.05  E-value=0.0042  Score=45.15  Aligned_cols=18  Identities=22%  Similarity=0.279  Sum_probs=16.3

Q ss_pred             EEECCCCCCHHHHHHHHh
Q psy15714         27 TTVGDGMVGKTCLLITHT   44 (205)
Q Consensus        27 ~v~G~~~~GKstli~~~~   44 (205)
                      +++|+.|+||||++.++.
T Consensus        28 vlvG~NgsGKS~iL~Ai~   45 (308)
T d1e69a_          28 AIVGPNGSGKSNIIDAIK   45 (308)
T ss_dssp             EEECCTTTCSTHHHHHHH
T ss_pred             EEECCCCCcHHHHHHHHH
Confidence            799999999999998773

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.99  E-value=0.0048  Score=43.09  Aligned_cols=21  Identities=19%  Similarity=0.321  Sum_probs=18.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q psy15714         25 KVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~   45 (205)
                      .|+|-|+.||||||+++.+..
T Consensus         4 ~I~ieG~dGsGKST~~~~L~~   24 (241)
T d1p5zb_           4 KISIEGNIAAGKSTFVNILKQ   24 (241)
T ss_dssp             EEEEECSTTSSHHHHHTTTGG
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999987665

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.94  E-value=0.0067  Score=42.55  Aligned_cols=23  Identities=26%  Similarity=0.052  Sum_probs=19.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENK   47 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~   47 (205)
                      =++|.|+||+|||+|...+...-
T Consensus        38 ~~li~G~pGsGKT~~~lq~~~~~   60 (254)
T d1pzna2          38 ITEVFGEFGSGKTQLAHTLAVMV   60 (254)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Confidence            46899999999999987776543

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=94.94  E-value=0.0088  Score=39.99  Aligned_cols=24  Identities=17%  Similarity=0.227  Sum_probs=20.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCC
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTENK   47 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~~   47 (205)
                      .=|++.|++|+||||+...+...-
T Consensus        16 ~gvli~G~sG~GKS~lal~l~~~G   39 (177)
T d1knxa2          16 VGVLLTGRSGIGKSECALDLINKN   39 (177)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHTTT
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHcC
Confidence            347999999999999998887654

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=94.82  E-value=0.0077  Score=44.53  Aligned_cols=26  Identities=19%  Similarity=0.132  Sum_probs=23.2

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcC
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~   46 (205)
                      +..++|.|=|.-|+||||+++.+...
T Consensus         3 m~~lrI~IEG~iGsGKSTl~~~L~~~   28 (331)
T d1osna_           3 MGVLRIYLDGAYGIGKTTAAEEFLHH   28 (331)
T ss_dssp             EEEEEEEEEESSSSCTTHHHHHHHHT
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHHH
Confidence            56789999999999999999988764

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=94.73  E-value=0.0091  Score=41.23  Aligned_cols=21  Identities=29%  Similarity=0.273  Sum_probs=18.7

Q ss_pred             EEEECCCCCCHHHHHHHHhcC
Q psy15714         26 VTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        26 i~v~G~~~~GKstli~~~~~~   46 (205)
                      +.+.|++|+|||.|++++...
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~   59 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNE   59 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            789999999999999888764

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=94.72  E-value=0.0042  Score=44.97  Aligned_cols=20  Identities=15%  Similarity=0.238  Sum_probs=14.8

Q ss_pred             EEEEECCCCCCHHHHHHHHh
Q psy15714         25 KVTTVGDGMVGKTCLLITHT   44 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~   44 (205)
                      =|+|.|.+||||||+.+++.
T Consensus         6 IIgIaG~SGSGKTTva~~l~   25 (288)
T d1a7ja_           6 IISVTGSSGAGTSTVKHTFD   25 (288)
T ss_dssp             EEEEESCC---CCTHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHH
Confidence            49999999999999997764

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=94.63  E-value=0.01  Score=39.40  Aligned_cols=24  Identities=21%  Similarity=0.278  Sum_probs=20.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCC
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTENK   47 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~~   47 (205)
                      .=|++.|++|+||||+.-.+...-
T Consensus        16 ~gvli~G~sg~GKS~la~~l~~~g   39 (169)
T d1ko7a2          16 VGVLITGDSGIGKSETALELIKRG   39 (169)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHTT
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHcC
Confidence            458999999999999987777654

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=94.63  E-value=0.0092  Score=41.64  Aligned_cols=23  Identities=30%  Similarity=0.317  Sum_probs=18.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~   46 (205)
                      --++|.|+||+|||+|+..+..+
T Consensus        27 sl~li~G~pGsGKT~l~~qia~~   49 (242)
T d1tf7a2          27 SIILATGATGTGKTLLVSRFVEN   49 (242)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHH
Confidence            35789999999999999766643

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.47  E-value=0.01  Score=41.42  Aligned_cols=22  Identities=23%  Similarity=0.365  Sum_probs=19.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~   46 (205)
                      .|+|=|.-||||||+++.+...
T Consensus         4 ~IviEG~~GsGKST~~~~L~~~   25 (241)
T d2ocpa1           4 RLSIEGNIAVGKSTFVKLLTKT   25 (241)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHH
Confidence            6889999999999999888753

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=94.41  E-value=0.0099  Score=44.55  Aligned_cols=24  Identities=21%  Similarity=0.213  Sum_probs=20.3

Q ss_pred             eeeEEEEECCCCCCHHHHHHHHhc
Q psy15714         22 KALKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        22 ~~~ki~v~G~~~~GKstli~~~~~   45 (205)
                      ..-.++++||.|+|||-|.+++..
T Consensus        67 p~~niLfiGPTGvGKTElAk~LA~   90 (364)
T d1um8a_          67 SKSNILLIGPTGSGKTLMAQTLAK   90 (364)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcceeeeCCCCccHHHHHHHHHh
Confidence            345699999999999999988764

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=94.39  E-value=0.016  Score=42.73  Aligned_cols=26  Identities=12%  Similarity=0.002  Sum_probs=22.6

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcC
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~~   46 (205)
                      ...++|.|=|.-|+||||+++.+...
T Consensus         4 ~~~~rI~iEG~iGsGKSTl~~~L~~~   29 (333)
T d1p6xa_           4 VTIVRIYLDGVYGIGKSTTGRVMASA   29 (333)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHSG
T ss_pred             CceEEEEEECCccCCHHHHHHHHHHH
Confidence            35789999999999999999888753

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.36  E-value=0.013  Score=40.18  Aligned_cols=21  Identities=10%  Similarity=0.086  Sum_probs=18.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q psy15714         25 KVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~   45 (205)
                      -+++.|++|+||||+++.+..
T Consensus        26 ~lLl~Gp~G~GKtt~a~~~a~   46 (207)
T d1a5ta2          26 ALLIQALPGMGDDALIYALSR   46 (207)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            489999999999999987665

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.31  E-value=0.014  Score=40.84  Aligned_cols=22  Identities=27%  Similarity=0.142  Sum_probs=19.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~   46 (205)
                      =++|.|++|+|||+|...+...
T Consensus        39 ~~~i~G~~GsGKT~lalq~~~~   60 (258)
T d1v5wa_          39 ITEAFGEFRTGKTQLSHTLCVT   60 (258)
T ss_dssp             EEEEECCTTCTHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5789999999999999887754

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=94.30  E-value=0.018  Score=42.22  Aligned_cols=21  Identities=24%  Similarity=0.243  Sum_probs=18.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q psy15714         25 KVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~   45 (205)
                      .++++|++|+|||.|.+.+..
T Consensus        54 ~~lf~Gp~GvGKT~lak~la~   74 (315)
T d1r6bx3          54 SFLFAGPTGVGKTEVTVQLSK   74 (315)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCcchhHHHHHHHHh
Confidence            589999999999999877664

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.30  E-value=0.011  Score=44.63  Aligned_cols=19  Identities=16%  Similarity=0.300  Sum_probs=16.6

Q ss_pred             EEEECCCCCCHHHHHHHHh
Q psy15714         26 VTTVGDGMVGKTCLLITHT   44 (205)
Q Consensus        26 i~v~G~~~~GKstli~~~~   44 (205)
                      .+|+|+.|+|||+++.++.
T Consensus        28 ~~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          28 TSIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            3688999999999998864

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=94.23  E-value=0.014  Score=42.81  Aligned_cols=20  Identities=40%  Similarity=0.456  Sum_probs=17.0

Q ss_pred             EEEECCCCCCHHHHHHHHhc
Q psy15714         26 VTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        26 i~v~G~~~~GKstli~~~~~   45 (205)
                      +++.|+||+|||.|.+++..
T Consensus       126 ~l~~G~pG~GKT~la~ala~  145 (321)
T d1w44a_         126 VIVTGKGNSGKTPLVHALGE  145 (321)
T ss_dssp             EEEECSSSSCHHHHHHHHHH
T ss_pred             EEEECCCCccHHHHHHHHHH
Confidence            45579999999999988775

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=94.20  E-value=0.013  Score=40.77  Aligned_cols=23  Identities=22%  Similarity=0.039  Sum_probs=19.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTENK   47 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~~   47 (205)
                      =++|.|++|+|||+|...+..+-
T Consensus        36 l~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          36 VTEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHH
Confidence            46899999999999997776543

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=93.96  E-value=0.015  Score=44.08  Aligned_cols=22  Identities=18%  Similarity=0.203  Sum_probs=19.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~   46 (205)
                      =|+|.|+.|+||||.+..+...
T Consensus       160 liLvtGpTGSGKSTTl~~~l~~  181 (401)
T d1p9ra_         160 IILVTGPTGSGKSTTLYAGLQE  181 (401)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEEcCCCCCccHHHHHHhhh
Confidence            4899999999999999888764

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=93.90  E-value=0.02  Score=42.12  Aligned_cols=24  Identities=25%  Similarity=0.145  Sum_probs=21.2

Q ss_pred             eeeEEEEECCCCCCHHHHHHHHhc
Q psy15714         22 KALKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        22 ~~~ki~v~G~~~~GKstli~~~~~   45 (205)
                      .-++|.|=|+-|+||||+++.+..
T Consensus         3 ~~lrI~IEG~iGsGKTTl~~~La~   26 (329)
T d1e2ka_           3 TLLRVYIDGPHGMGKTTTTQLLVA   26 (329)
T ss_dssp             EEEEEEECSCTTSSHHHHHHHHTC
T ss_pred             CceEEEEECCcCCCHHHHHHHHHH
Confidence            457899999999999999998864

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.86  E-value=0.016  Score=39.86  Aligned_cols=21  Identities=19%  Similarity=0.017  Sum_probs=18.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q psy15714         25 KVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~   45 (205)
                      =|++-|..||||||+++.+..
T Consensus         5 ~I~iEG~DGsGKST~~~~L~~   25 (214)
T d1tmka_           5 LILIEGLDRTGKTTQCNILYK   25 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            488999999999999877654

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=93.69  E-value=0.013  Score=42.23  Aligned_cols=15  Identities=20%  Similarity=0.264  Sum_probs=13.2

Q ss_pred             EEEECCCCCCHHHHH
Q psy15714         26 VTTVGDGMVGKTCLL   40 (205)
Q Consensus        26 i~v~G~~~~GKstli   40 (205)
                      ++|.|.||+||||.+
T Consensus        17 ~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVI   31 (306)
T ss_dssp             EEECCCTTSCHHHHH
T ss_pred             EEEEeeCCccHHHHH
Confidence            689999999999864

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=93.67  E-value=0.015  Score=39.58  Aligned_cols=24  Identities=17%  Similarity=0.181  Sum_probs=19.7

Q ss_pred             eeeEEEEECCCCCCHHHHHHHHhc
Q psy15714         22 KALKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        22 ~~~ki~v~G~~~~GKstli~~~~~   45 (205)
                      +.=.+++.|++++|||.|+.++..
T Consensus        52 Kkn~i~~~GP~~TGKS~f~~sl~~   75 (205)
T d1tuea_          52 KKNCLVFCGPANTGKSYFGMSFIH   75 (205)
T ss_dssp             TCSEEEEESCGGGCHHHHHHHHHH
T ss_pred             CceEEEEECCCCccHHHHHHHHHH
Confidence            335789999999999999876654

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=93.51  E-value=0.02  Score=39.35  Aligned_cols=20  Identities=25%  Similarity=0.245  Sum_probs=16.5

Q ss_pred             EEEEECCCCCCHHHHHHHHh
Q psy15714         25 KVTTVGDGMVGKTCLLITHT   44 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~   44 (205)
                      -+.|.|++|+|||+|...+.
T Consensus        28 ~~~I~G~~G~GKT~la~~~~   47 (242)
T d1tf7a1          28 STLVSGTSGTGKTLFSIQFL   47 (242)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHH
Confidence            56889999999999985543

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=93.43  E-value=0.016  Score=42.09  Aligned_cols=15  Identities=27%  Similarity=0.313  Sum_probs=13.5

Q ss_pred             EEEECCCCCCHHHHH
Q psy15714         26 VTTVGDGMVGKTCLL   40 (205)
Q Consensus        26 i~v~G~~~~GKstli   40 (205)
                      ++|.|.+|+||||.+
T Consensus        27 ~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          27 LLIMAGAGSGKTRVL   41 (318)
T ss_dssp             EEEEECTTSCHHHHH
T ss_pred             EEEEecCCccHHHHH
Confidence            789999999999765

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=93.24  E-value=0.026  Score=40.12  Aligned_cols=19  Identities=11%  Similarity=0.274  Sum_probs=15.9

Q ss_pred             EEEECCCCCCHHHHHHHHh
Q psy15714         26 VTTVGDGMVGKTCLLITHT   44 (205)
Q Consensus        26 i~v~G~~~~GKstli~~~~   44 (205)
                      ++|.|.+|+|||+|+..+.
T Consensus        38 ~vi~G~~G~GKT~~~~~la   56 (277)
T d1cr2a_          38 IMVTSGSGMGKSTFVRQQA   56 (277)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHH
Confidence            6899999999999975544

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=93.07  E-value=0.03  Score=35.76  Aligned_cols=25  Identities=16%  Similarity=0.274  Sum_probs=18.3

Q ss_pred             HHHHHHhhhCCCCCEEEEeeCcccccC
Q psy15714        116 KWYPELKHHCPKVPIILVGTKADLRSE  142 (205)
Q Consensus       116 ~~~~~~~~~~~~~p~ivv~nK~Dl~~~  142 (205)
                      .+...+...  ++++++.|-..|-...
T Consensus        97 ~~~~~~~~~--g~~Viv~GLd~Df~~~  121 (139)
T d2b8ta1          97 EVANILAEN--GFVVIISGLDKNFKGE  121 (139)
T ss_dssp             HHHHHHHHT--TCEEEEECCSBCTTSS
T ss_pred             HHHHHHHhc--CceEEEEEeccccccC
Confidence            455555555  8999999999986544

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=92.50  E-value=0.034  Score=39.36  Aligned_cols=19  Identities=26%  Similarity=0.300  Sum_probs=16.0

Q ss_pred             EEEECCCCCCHHHHHHHHh
Q psy15714         26 VTTVGDGMVGKTCLLITHT   44 (205)
Q Consensus        26 i~v~G~~~~GKstli~~~~   44 (205)
                      ++|.|++|+|||+|+-.+.
T Consensus        32 ~~i~G~~G~GKS~l~l~la   50 (274)
T d1nlfa_          32 GALVSPGGAGKSMLALQLA   50 (274)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHH
Confidence            6799999999999985544

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=92.49  E-value=0.029  Score=42.62  Aligned_cols=22  Identities=23%  Similarity=0.172  Sum_probs=18.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHhc
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~   45 (205)
                      -+++|+|.+|+|||+++..+..
T Consensus        51 ~H~~I~G~tGsGKT~~l~~li~   72 (433)
T d1e9ra_          51 RHLLVNGATGTGKSVLLRELAY   72 (433)
T ss_dssp             GCEEEEECTTSSHHHHHHHHHH
T ss_pred             ceEEEEeCCCCcHHHHHHHHHH
Confidence            3699999999999999866653

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=92.49  E-value=0.048  Score=38.85  Aligned_cols=25  Identities=20%  Similarity=0.153  Sum_probs=21.0

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhc
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~   45 (205)
                      .++--+++.|++++|||+|++.+..
T Consensus       102 ~k~n~~~l~G~~~tGKS~f~~~i~~  126 (267)
T d1u0ja_         102 GKRNTIWLFGPATTGKTNIAEAIAH  126 (267)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CccEEEEEEcCCCCCHHHHHHHHHH
Confidence            4566789999999999999977665

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=92.49  E-value=0.039  Score=38.33  Aligned_cols=21  Identities=14%  Similarity=-0.083  Sum_probs=18.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q psy15714         25 KVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~   45 (205)
                      .|++.|..||||||+.+.|..
T Consensus         3 iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           3 LIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999988754

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=92.06  E-value=0.046  Score=40.69  Aligned_cols=18  Identities=22%  Similarity=0.159  Sum_probs=15.1

Q ss_pred             EEEEECCCCCCHHHHHHH
Q psy15714         25 KVTTVGDGMVGKTCLLIT   42 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~   42 (205)
                      -.+|.|+||+|||+++..
T Consensus       165 ~~vI~G~pGTGKTt~i~~  182 (359)
T d1w36d1         165 ISVISGGPGTGKTTTVAK  182 (359)
T ss_dssp             EEEEECCTTSTHHHHHHH
T ss_pred             eEEEEcCCCCCceehHHH
Confidence            478899999999998743

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=91.74  E-value=0.045  Score=39.98  Aligned_cols=21  Identities=33%  Similarity=0.230  Sum_probs=17.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q psy15714         25 KVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~   45 (205)
                      -++++|++|+|||.+.+.+..
T Consensus        55 ~~lf~Gp~G~GKt~lak~la~   75 (315)
T d1qvra3          55 SFLFLGPTGVGKTELAKTLAA   75 (315)
T ss_dssp             EEEEBSCSSSSHHHHHHHHHH
T ss_pred             EEEEECCCcchHHHHHHHHHH
Confidence            578899999999999876553

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=91.62  E-value=0.055  Score=38.89  Aligned_cols=22  Identities=27%  Similarity=0.218  Sum_probs=19.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHhc
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~   45 (205)
                      =|++|+|++|+|||+|+..+..
T Consensus        44 Qr~~I~g~~g~GKT~l~~~i~~   65 (289)
T d1xpua3          44 QRGLIVAPPKAGKTMLLQNIAQ   65 (289)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHH
T ss_pred             CeeeEeCCCCCCHHHHHHHHHH
Confidence            4899999999999999866654

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.20  E-value=0.095  Score=32.33  Aligned_cols=25  Identities=12%  Similarity=0.090  Sum_probs=21.6

Q ss_pred             ceeeEEEEECCCCCCHHHHHHHHhc
Q psy15714         21 HKALKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        21 ~~~~ki~v~G~~~~GKstli~~~~~   45 (205)
                      +.-+-|.+.|..|+|||||.+++..
T Consensus         4 kqgf~i~~tg~~~~gk~~ia~al~~   28 (122)
T d1g8fa3           4 KQGFSIVLGNSLTVSREQLSIALLS   28 (122)
T ss_dssp             GCCEEEEECTTCCSCHHHHHHHHHH
T ss_pred             ccceEEEEeCCCCCCHHHHHHHHHH
Confidence            4568999999999999999988753

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=90.63  E-value=0.43  Score=31.35  Aligned_cols=107  Identities=14%  Similarity=0.160  Sum_probs=57.5

Q ss_pred             ccccceeeEEEEECC-CCCCHHHHHHHHhcCCCCCCCcCccccccceeEEECCEEEEEEEEEcCCCccc-----------
Q psy15714         17 SKSVHKALKVTTVGD-GMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITVDNKTYDVTLWDTAGQEDY-----------   84 (205)
Q Consensus        17 ~~~~~~~~ki~v~G~-~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-----------   84 (205)
                      ..+.++.+||+|+|. .+.|-+.. ..+..+.....                ...+.+.++|.+.....           
T Consensus        18 ~~~~k~~~kV~I~GA~G~Ig~~l~-~~La~g~v~g~----------------~~~i~L~L~di~~~~~~l~g~~mdl~d~   80 (175)
T d7mdha1          18 TKSWKKLVNIAVSGAAGMISNHLL-FKLASGEVFGQ----------------DQPIALKLLGSERSFQALEGVAMELEDS   80 (175)
T ss_dssp             ---CCCCEEEEEETTTSHHHHHHH-HHHHHTTTTCT----------------TCCEEEEEECCGGGHHHHHHHHHHHHTT
T ss_pred             hhccCCCcEEEEECCCcHHHHHHH-HHHHcCcccCC----------------CceEEEEEecCccccchhcchhhhhccc
Confidence            345567899999996 66786544 45555543211                11133555555441110           


Q ss_pred             ----------ccccccCcCCCcEEEEEEECCCc--chHHHH-------HHHHHHHHhhhCC-CCCEEEEeeCcccc
Q psy15714         85 ----------ERLRPMSYPNTDCFLLCFSIGST--SSYENI-------LSKWYPELKHHCP-KVPIILVGTKADLR  140 (205)
Q Consensus        85 ----------~~~~~~~~~~~~~~i~v~d~~~~--~s~~~~-------~~~~~~~~~~~~~-~~p~ivv~nK~Dl~  140 (205)
                                ..-....+.++|++|++-.....  .+-.++       ...+...+.++.+ +.-+++++|=.|..
T Consensus        81 a~~~~~~~~~~~~~~~~~~~aDvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~NPvd~~  156 (175)
T d7mdha1          81 LYPLLREVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCNTN  156 (175)
T ss_dssp             TCTTEEEEEEESCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHH
T ss_pred             ccccccCccccccchhhccCCceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecCcHHHH
Confidence                      00011237889999998754422  222222       2345566666664 67788888888743

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=90.47  E-value=0.37  Score=32.69  Aligned_cols=67  Identities=16%  Similarity=0.124  Sum_probs=46.7

Q ss_pred             EEEEEEEEcCCCcccccccccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEE-EEeeCcccccC
Q psy15714         70 TYDVTLWDTAGQEDYERLRPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPII-LVGTKADLRSE  142 (205)
Q Consensus        70 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-vv~nK~Dl~~~  142 (205)
                      .+.+.++|+++......  ...+..+|.++++...+ ..++..+. ..+..+++.  ++|++ +|.|+.+....
T Consensus       111 ~~d~IiiD~~~~~~~~~--~~~l~~aD~viiv~~~~-~~s~~~~~-~~~~~~~~~--~~~~~giv~N~~~~~~~  178 (237)
T d1g3qa_         111 KFDFILIDCPAGLQLDA--MSAMLSGEEALLVTNPE-ISCLTDTM-KVGIVLKKA--GLAILGFVLNRYGRSDR  178 (237)
T ss_dssp             GCSEEEEECCSSSSHHH--HHHHTTCSEEEEEECSC-HHHHHHHH-HHHHHHHHT--TCEEEEEEEEEETSCTT
T ss_pred             cCCEEEEcccccccccc--hhhhhhhhccccccccc-ceecchhh-HHHHHHhhh--hhhhhhhhhcccccccc
Confidence            46788999988654332  23466799999998753 55666665 566666665  77876 89999986543

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=90.23  E-value=0.088  Score=37.11  Aligned_cols=70  Identities=10%  Similarity=0.086  Sum_probs=40.4

Q ss_pred             EEEEEEEcCCCcccccc-cccCcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhC--CCCCE-EEEeeCcccccC
Q psy15714         71 YDVTLWDTAGQEDYERL-RPMSYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC--PKVPI-ILVGTKADLRSE  142 (205)
Q Consensus        71 ~~~~i~D~~g~~~~~~~-~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~-ivv~nK~Dl~~~  142 (205)
                      +.+.+.|+|+....... .......+|.++++... +..++..+. .....+....  .+.++ -++.|+.+....
T Consensus       116 ~D~viiD~p~~~~~~~~~~~~~~~~ad~vliv~~~-~~~sl~~~~-~~~~~i~~~~~~~~~~~~~vv~N~~~~~~~  189 (269)
T d1cp2a_         116 LDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASG-EMMALYAAN-NISKGIQKYAKSGGVRLGGIICNSRKVANE  189 (269)
T ss_dssp             CSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECS-SHHHHHHHH-HHHHHHHHHBTTBBCEEEEEEEECCSSSCC
T ss_pred             CCEEEeccCCccchhHHHHHHHhhccCceeeccch-hhhHHHHHH-HHHHHHHhhccccceeccceEEeeecCCCc
Confidence            56888899875432221 12223457888777765 456666654 4545554433  23433 478899886554

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=90.00  E-value=0.096  Score=36.69  Aligned_cols=22  Identities=23%  Similarity=0.218  Sum_probs=18.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHhc
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~   45 (205)
                      .-|+|.|++|+||+.+.+.+-.
T Consensus        24 ~pvlI~Ge~GtGK~~~A~~ih~   45 (247)
T d1ny5a2          24 CPVLITGESGVGKEVVARLIHK   45 (247)
T ss_dssp             SCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEECCCCcCHHHHHHHHHH
Confidence            3589999999999999877643

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=89.87  E-value=0.1  Score=36.23  Aligned_cols=19  Identities=21%  Similarity=0.342  Sum_probs=16.8

Q ss_pred             EEEECCCCCCHHHHHHHHh
Q psy15714         26 VTTVGDGMVGKTCLLITHT   44 (205)
Q Consensus        26 i~v~G~~~~GKstli~~~~   44 (205)
                      ++|.|+..+||||+++.+.
T Consensus        44 ~iiTGpN~~GKSt~lk~i~   62 (234)
T d1wb9a2          44 LIITGPNMGGKSTYMRQTA   62 (234)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEeccCchhhHHHHHHHH
Confidence            6899999999999997755

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=89.49  E-value=0.12  Score=35.74  Aligned_cols=19  Identities=32%  Similarity=0.473  Sum_probs=16.8

Q ss_pred             EEEECCCCCCHHHHHHHHh
Q psy15714         26 VTTVGDGMVGKTCLLITHT   44 (205)
Q Consensus        26 i~v~G~~~~GKstli~~~~   44 (205)
                      ++|.|+..+||||+++.+.
T Consensus        38 ~iiTGpN~~GKSt~lk~i~   56 (224)
T d1ewqa2          38 VLITGPNMAGKSTFLRQTA   56 (224)
T ss_dssp             EEEESCSSSSHHHHHHHHH
T ss_pred             EEEECCCccccchhhhhhH
Confidence            6899999999999997654

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=89.38  E-value=0.12  Score=36.58  Aligned_cols=21  Identities=29%  Similarity=0.270  Sum_probs=17.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q psy15714         25 KVTTVGDGMVGKTCLLITHTE   45 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~   45 (205)
                      =+.+.|++++|||||+-.+..
T Consensus        56 itei~G~~gsGKTtl~l~~~~   76 (263)
T d1u94a1          56 IVEIYGPESSGKTTLTLQVIA   76 (263)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEecCCCcHHHHHHHHHHH
Confidence            468999999999999855543

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=87.97  E-value=0.16  Score=36.07  Aligned_cols=38  Identities=16%  Similarity=0.110  Sum_probs=25.3

Q ss_pred             cEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCE-EEEeeCc
Q psy15714         96 DCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPI-ILVGTKA  137 (205)
Q Consensus        96 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-ivv~nK~  137 (205)
                      ..+++|-.. +..+..+.. ..+..+...  ++|+ -+|+||.
T Consensus       199 t~~~lVt~p-e~~~~~~~~-r~~~~l~~~--gi~~~~vVvN~v  237 (296)
T d1ihua1         199 TRLVLVARL-QKSTLQEVA-RTHLELAAI--GLKNQYLVINGV  237 (296)
T ss_dssp             EEEEEEEES-CHHHHHHHH-HHHHHHHHH--TCCCEEEEEEEE
T ss_pred             ceeeEecCc-chhHHHHHH-HHHHHHHhc--CCCceEEEEcCC
Confidence            345665544 345666665 677777777  7776 4788996

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=87.73  E-value=0.18  Score=35.85  Aligned_cols=22  Identities=36%  Similarity=0.528  Sum_probs=19.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q psy15714         25 KVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~~~   46 (205)
                      |++++|.+|+|||+|+..+..+
T Consensus        70 r~~If~~~g~GKt~l~~~i~~~   91 (276)
T d2jdid3          70 KIGLFGGAGVGKTVLIMELINN   91 (276)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEeeCCCCCCHHHHHHHHHHH
Confidence            7999999999999998776544

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=87.35  E-value=0.18  Score=33.90  Aligned_cols=16  Identities=31%  Similarity=0.345  Sum_probs=14.4

Q ss_pred             EEEEECCC-CCCHHHHH
Q psy15714         25 KVTTVGDG-MVGKTCLL   40 (205)
Q Consensus        25 ki~v~G~~-~~GKstli   40 (205)
                      |+.|.|.. |+||||+.
T Consensus         3 ~~~i~gt~~GVGKTtvs   19 (224)
T d1byia_           3 RYFVTGTDTEVGKTVAS   19 (224)
T ss_dssp             EEEEEESSTTSCHHHHH
T ss_pred             eEEEEECCCCccHHHHH
Confidence            78999995 99999986

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=86.65  E-value=0.21  Score=35.16  Aligned_cols=40  Identities=10%  Similarity=-0.045  Sum_probs=23.1

Q ss_pred             CcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCE-EEEeeCcc
Q psy15714         95 TDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPI-ILVGTKAD  138 (205)
Q Consensus        95 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-ivv~nK~D  138 (205)
                      .+.+++|-.. +..++.++. .++..+...  ++|+ -+|.|+.-
T Consensus       183 ~~~~vlV~~p-~~~~~~~~~-r~~~~l~~~--~~~~~~iV~N~~~  223 (279)
T d1ihua2         183 RTKVLLVTLP-ETTPVLEAA-NLQADLERA--GIHPWGWIINNSL  223 (279)
T ss_dssp             TEEEEEEECS-SHHHHHHHH-HHHHHHHHT--TCCCCEEEEEEES
T ss_pred             cccceEeccc-cHhHHHHHH-HHHHHHHhc--CCCccEEEEcCCc
Confidence            4556665543 455666665 566666666  4454 36678753

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=86.50  E-value=0.21  Score=35.44  Aligned_cols=69  Identities=10%  Similarity=0.059  Sum_probs=36.9

Q ss_pred             EEEEEEEEcCCCccccccccc-CcCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhC--CCCCEE-EEeeCcccc
Q psy15714         70 TYDVTLWDTAGQEDYERLRPM-SYPNTDCFLLCFSIGSTSSYENILSKWYPELKHHC--PKVPII-LVGTKADLR  140 (205)
Q Consensus        70 ~~~~~i~D~~g~~~~~~~~~~-~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~i-vv~nK~Dl~  140 (205)
                      .+.+.++|+|+.......... ....++.++++.. .+..++..+. ..+..+....  .+.++. +|.|+.+..
T Consensus       118 ~~D~iiiD~pp~~~~~~~~~~~~~~~a~~vlv~~~-~~~~s~~~~~-~~~~~i~~~~~~~~~~~~gvv~n~~~~~  190 (289)
T d2afhe1         118 DLDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCS-GEMMAMYAAN-NISKGIVKYANSGSVRLGGLICNSRNTD  190 (289)
T ss_dssp             TCSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEEC-SSHHHHHHHH-HHHHHHHHHHTTSCCEEEEEEEECCCCT
T ss_pred             cCCeEeeccCCccCHHHHHHHHHhhccceeecccc-hhHHHHHHHH-HHHHHHHhhhhcccccccceeehhhcch
Confidence            356788898775432222111 1235666666654 4455565554 4444444332  345553 888987643

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.76  E-value=0.76  Score=28.57  Aligned_cols=44  Identities=5%  Similarity=0.154  Sum_probs=26.1

Q ss_pred             cCCCcEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccC
Q psy15714         92 YPNTDCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSE  142 (205)
Q Consensus        92 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  142 (205)
                      +...|++.  +  +..+=|.++. .+...+...  ++++++.|-..|-...
T Consensus        71 ~~~~d~I~--I--DEaQFf~dl~-~~~~~~~~~--~~~Viv~GLd~Df~~~  114 (133)
T d1xbta1          71 ALGVAVIG--I--DEGQFFPDIV-EFCEAMANA--GKTVIVAALDGTFQRK  114 (133)
T ss_dssp             HHTCSEEE--E--SSGGGCTTHH-HHHHHHHHT--TCEEEEECCSBCTTSS
T ss_pred             hcccceEE--e--ehhHHHHHHH-HHHHHHHhc--CCcEEEEEeccccccC
Confidence            34556433  3  3333334444 455555555  8999999998886544

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=85.56  E-value=0.18  Score=36.46  Aligned_cols=14  Identities=36%  Similarity=0.266  Sum_probs=13.1

Q ss_pred             EEECCCCCCHHHHH
Q psy15714         27 TTVGDGMVGKTCLL   40 (205)
Q Consensus        27 ~v~G~~~~GKstli   40 (205)
                      ++.|.+|+|||||-
T Consensus        18 lfFGLSGTGKTTLs   31 (313)
T d2olra1          18 VFFGLSGTGKTTLS   31 (313)
T ss_dssp             EEECSTTSSHHHHH
T ss_pred             EEEccCCCCcccce
Confidence            79999999999986

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=85.47  E-value=0.2  Score=33.24  Aligned_cols=21  Identities=14%  Similarity=0.147  Sum_probs=18.5

Q ss_pred             EEEECCCCCCHHHHHHHHhcC
Q psy15714         26 VTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        26 i~v~G~~~~GKstli~~~~~~   46 (205)
                      |+|+|..++|||.+..++...
T Consensus         2 iLVtGGarSGKS~~AE~l~~~   22 (180)
T d1c9ka_           2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCccHHHHHHHHHhc
Confidence            689999999999999888754

>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=85.06  E-value=0.95  Score=28.45  Aligned_cols=108  Identities=12%  Similarity=0.172  Sum_probs=48.0

Q ss_pred             eeEEEEECCCCCCHHHHH-HHHhc----CCCCCCCcCccccccc--eeEEECCEEEEEEEEEcCCCcccccccccCcCCC
Q psy15714         23 ALKVTTVGDGMVGKTCLL-ITHTE----NKFPTDYVPTVFDNYP--DTITVDNKTYDVTLWDTAGQEDYERLRPMSYPNT   95 (205)
Q Consensus        23 ~~ki~v~G~~~~GKstli-~~~~~----~~~~~~~~~t~~~~~~--~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~   95 (205)
                      .+. +++|+=.|||||-+ +++..    ++-.--..|...+++.  .....++....-...+.     .........+..
T Consensus         8 ~l~-lI~GpMfSGKTteLi~~~~~~~~~g~~vl~i~~~~D~Ry~~~~i~sh~g~~~~a~~~~~-----~~~~~~~~~~~~   81 (141)
T d1xx6a1           8 WVE-VIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVSHMGEKEQAVAIKN-----SREILKYFEEDT   81 (141)
T ss_dssp             EEE-EEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-------CEEECTTSCEEECEEESS-----STHHHHHCCTTC
T ss_pred             eEE-EEEeccccHHHHHHHHHHHHhhhcCCcEEEEEeccccccccceeeecccceEEEEEecc-----hhhhhhhhcccc
Confidence            455 55899999999976 33322    1111111222222221  12223343322222111     111122234556


Q ss_pred             cEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccC
Q psy15714         96 DCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSE  142 (205)
Q Consensus        96 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  142 (205)
                      |++.+  |  ..+=|.+.....+..+...  ++++++.|-..|-...
T Consensus        82 dvI~I--D--E~QFf~d~~~~~~~~l~~~--g~~Viv~GLd~Df~~~  122 (141)
T d1xx6a1          82 EVIAI--D--EVQFFDDEIVEIVNKIAES--GRRVICAGLDMDFRGK  122 (141)
T ss_dssp             SEEEE--C--SGGGSCTHHHHHHHHHHHT--TCEEEEEECSBCTTSC
T ss_pred             cEEEE--e--ehhhccccHHHHHHhheeC--CcEEEEEEeccccccC
Confidence            65444  2  2222223221334444444  8999999998886544

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=84.60  E-value=0.19  Score=36.47  Aligned_cols=15  Identities=33%  Similarity=0.251  Sum_probs=13.5

Q ss_pred             EEEECCCCCCHHHHH
Q psy15714         26 VTTVGDGMVGKTCLL   40 (205)
Q Consensus        26 i~v~G~~~~GKstli   40 (205)
                      -++.|.+|+|||||-
T Consensus        17 alffGLSGTGKTTLs   31 (318)
T d1j3ba1          17 AVFFGLSGTGKTTLS   31 (318)
T ss_dssp             EEEEECTTSCHHHHT
T ss_pred             EEEEccCCCCccccc
Confidence            389999999999985

>d1zpda1 c.31.1.3 (A:188-362) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: Pyruvate oxidase and decarboxylase, middle domain
domain: Pyruvate decarboxylase
species: Zymomonas mobilis [TaxId: 542]

Probab=84.54  E-value=1.6  Score=28.32  Aligned_cols=55  Identities=13%  Similarity=0.141  Sum_probs=42.0

Q ss_pred             CCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccccCchhhhhhhhhccccccHHHHHHHHHHcCCceEEEc
Q psy15714        104 IGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLRSENKTIDKKKAAEVDLVSTSQGKKMRRKIKAAEYLEC  177 (205)
Q Consensus       104 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (205)
                      .+|..+++...+.....+...  ..|+|++|.......                ..++...+++..+++ ++.+
T Consensus         2 ~sd~~~l~~~v~~~~~~l~~A--krPvIi~G~g~~~~~----------------a~~~l~~lae~~~~P-v~tt   56 (175)
T d1zpda1           2 ASDEASLNAAVDETLKFIANR--DKVAVLVGSKLRAAG----------------AEEAAVKFTDALGGA-VATM   56 (175)
T ss_dssp             CCCHHHHHHHHHHHHHHHTTC--SCEEEEECTTTTTTT----------------CHHHHHHHHHHHCCC-EEEE
T ss_pred             CCChHHHHHHHHHHHHHHHcC--CCEEEEECcCccccc----------------hHHHHHHHHHhhcee-EEec
Confidence            356777777777777777766  899999999987543                356788999999988 5543

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=84.36  E-value=0.33  Score=32.59  Aligned_cols=103  Identities=10%  Similarity=0.118  Sum_probs=53.8

Q ss_pred             eeeEEEEECCCCCCHHHHHHHHhcCCCCCCCcCccccccceeEEE--CCEEEEEEEEEcCCCccccccc----ccCcCCC
Q psy15714         22 KALKVTTVGDGMVGKTCLLITHTENKFPTDYVPTVFDNYPDTITV--DNKTYDVTLWDTAGQEDYERLR----PMSYPNT   95 (205)
Q Consensus        22 ~~~ki~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~~~i~D~~g~~~~~~~~----~~~~~~~   95 (205)
                      ....+++.|++|+|||++...+...-....  ....+    .+.+  ++..        -|-+..+.+.    ..-+.+.
T Consensus        14 ~~~~~l~~G~~g~gk~~~a~~l~~~i~~~~--~~h~D----~~~i~~~~~~--------I~Id~IR~i~~~~~~~~~~~~   79 (198)
T d2gnoa2          14 EGISILINGEDLSYPREVSLELPEYVEKFP--PKASD----VLEIDPEGEN--------IGIDDIRTIKDFLNYSPELYT   79 (198)
T ss_dssp             SSEEEEEECSSSSHHHHHHHHHHHHHHTSC--CCTTT----EEEECCSSSC--------BCHHHHHHHHHHHTSCCSSSS
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHHhccc--cCCCC----EEEEeCCcCC--------CCHHHHHHHHHHHhhCcccCC
Confidence            456899999999999999877664211110  00001    1111  1110        0112222221    1112233


Q ss_pred             cEEEEEEECCCcchHHHHHHHHHHHHhhhCCCCCEEEEeeCcccc
Q psy15714         96 DCFLLCFSIGSTSSYENILSKWYPELKHHCPKVPIILVGTKADLR  140 (205)
Q Consensus        96 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  140 (205)
                      .-++++.++ +.-+..... .++..+++...++-++++.+..+..
T Consensus        80 ~KviIId~a-d~l~~~aqN-aLLK~LEEPp~~t~fiLit~~~~~l  122 (198)
T d2gnoa2          80 RKYVIVHDC-ERMTQQAAN-AFLKALEEPPEYAVIVLNTRRWHYL  122 (198)
T ss_dssp             SEEEEETTG-GGBCHHHHH-HTHHHHHSCCTTEEEEEEESCGGGS
T ss_pred             CEEEEEeCc-cccchhhhh-HHHHHHhCCCCCceeeeccCChhhC
Confidence            345555443 444444443 6888888876777788887777643

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=84.16  E-value=0.23  Score=36.03  Aligned_cols=14  Identities=36%  Similarity=0.266  Sum_probs=13.2

Q ss_pred             EEECCCCCCHHHHH
Q psy15714         27 TTVGDGMVGKTCLL   40 (205)
Q Consensus        27 ~v~G~~~~GKstli   40 (205)
                      ++.|.+|+|||||-
T Consensus        18 lfFGLSGTGKTTLs   31 (323)
T d1ii2a1          18 VFFGLSGTGKTTLS   31 (323)
T ss_dssp             EEECCTTSSHHHHH
T ss_pred             EEEccCCCCcccce
Confidence            69999999999996

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=83.70  E-value=0.28  Score=30.42  Aligned_cols=20  Identities=10%  Similarity=-0.084  Sum_probs=15.6

Q ss_pred             EEEEECCCCCCHHHHHHHHh
Q psy15714         25 KVTTVGDGMVGKTCLLITHT   44 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~   44 (205)
                      ..+|.++.|+|||+++-.+.
T Consensus        10 ~~ll~apTGsGKT~~~~~~~   29 (136)
T d1a1va1          10 VAHLHAPTGSGKSTKVPAAY   29 (136)
T ss_dssp             EEEEECCTTSCTTTHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHH
Confidence            35789999999999875443

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=82.54  E-value=0.28  Score=35.07  Aligned_cols=23  Identities=30%  Similarity=0.406  Sum_probs=18.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTEN   46 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~   46 (205)
                      =|++++|.+|+|||+|+..+..+
T Consensus        69 Qr~~If~~~g~GKt~ll~~~~~~   91 (285)
T d2jdia3          69 QRELIIGDRQTGKTSIAIDTIIN   91 (285)
T ss_dssp             CBCEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEeecCCCCChHHHHHHHHHh
Confidence            47899999999999998655543

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=82.37  E-value=0.44  Score=33.64  Aligned_cols=20  Identities=20%  Similarity=0.275  Sum_probs=16.4

Q ss_pred             EEEEECCCCCCHHHHHHHHh
Q psy15714         25 KVTTVGDGMVGKTCLLITHT   44 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~   44 (205)
                      -+.+.|++++|||+|+-.+.
T Consensus        62 i~e~~G~~~~GKT~l~l~~~   81 (269)
T d1mo6a1          62 VIEIYGPESSGKTTVALHAV   81 (269)
T ss_dssp             EEEEECSSSSSHHHHHHHHH
T ss_pred             eEEEecCCCcHHHHHHHHHH
Confidence            46899999999999975544

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=81.85  E-value=0.43  Score=33.69  Aligned_cols=20  Identities=25%  Similarity=0.207  Sum_probs=16.6

Q ss_pred             EEEEECCCCCCHHHHHHHHh
Q psy15714         25 KVTTVGDGMVGKTCLLITHT   44 (205)
Q Consensus        25 ki~v~G~~~~GKstli~~~~   44 (205)
                      -+.+.|++++|||+|+..+.
T Consensus        59 itei~G~~~sGKT~l~l~~~   78 (268)
T d1xp8a1          59 ITEIYGPESGGKTTLALAIV   78 (268)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEecCCccchHHHHHHHH
Confidence            56889999999999985554

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=80.74  E-value=0.38  Score=34.15  Aligned_cols=24  Identities=25%  Similarity=0.336  Sum_probs=19.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCC
Q psy15714         24 LKVTTVGDGMVGKTCLLITHTENK   47 (205)
Q Consensus        24 ~ki~v~G~~~~GKstli~~~~~~~   47 (205)
                      =|++++|.+|+|||+|+.......
T Consensus        68 Qr~~Ifg~~g~GKt~l~~~~~~~~   91 (276)
T d1fx0a3          68 QRELIIGDRQTGKTAVATDTILNQ   91 (276)
T ss_dssp             CBCBEEESSSSSHHHHHHHHHHTC
T ss_pred             ceEeeccCCCCChHHHHHHHHhhh
Confidence            378999999999999986554443