Psyllid ID: psy15723

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240---
Protein Sequence
MPKSKRDKKVTLSKTVKKGLERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDWKDSRFFFGKNKVMAYALGKSQEDEIEKNIHVVSSALKGQCGLLFTNRSKDDVLMWFDVYEDEDFAKSGFISTEDVELKEGPLPEFPHSIEPQLRQLGLQTNLNKGVVTLFKDHTVCKKGDVLTPEQARILKLLKKKMAKFKVLLYLWYNKKEGTFENLLDREKTPMDIYDMEDDENNSNEESD
Secondary Structure (PSIPRED)
ccccccccccccccccccHHHHHHHHHHHHHHHHHHccEEEEEEEcccccHHHHHHHHHHcccEEEEEHHHHHHHHHHcccccccccccHHHHccccccEEEEEEcccHHHHHHHHHHcccccccccccccccEEEEEcccccccccccHHHHHHHcccccccccEEEEcccEEEEEccccccHHHHHHHHHcccccEEEEEEEEEEEEcccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccEEEEcccccccHHHHHHHHHHHHHHHHHcccEEEEEEccccHHHHHHHHHHHcccEEEEccHHHHHHHHHHcHHHcccHHHHHHHHHHcccEEEEEEcccHHHHHHHHHHcccccccccccccccEEEEcccccccccccccHHHHHcccccEEcccEEEEEccEEEEEccccccHHHHHHHHHHcccccEEEEEEEEEEccccccccHHccccHHHHHHHHHHccccccccccc
Coil and Loop (DISEMBL)
mpkskrdkkvTLSKTVKKGLERKQNLRDELVKAVEKYNNIFVFSVQNMRnsklkdvrndwkdsrfffgKNKVMAYALgksqedeiEKNIHVVSSALkgqcgllftnrskddvLMWFdvyededfaksgfistedvelkegplpefphsiepqlrqlglqtnlnkGVVTLFKdhtvckkgdvltPEQARILKLLKKKMAKFKVLLYLWYNkkegtfenlldrektpmdiydmeddennsneesd
Flexible Loop (DISEMBL)
mpkskrdkkvtlsktvkkglerkqnlrdeLVKAVEKYNNIFvfsvqnmrnsklkdvrndwKDSRFFFGKNKVMAYALGKSQEDEIEKNIHVVSSALKGQCGLLFTNRSKDDVLMWFDVYEDEDFAKSGFISTEDVELKEGPLPEFPHSIEPQLRQLGLQTNLNKGVVTLFKDhtvckkgdvltpEQARILKLLKKKMAKFKVLLYLWYnkkegtfenlldrektpmdiydmeddennsneesd
Low Complexity Region (SEG)
MPKSKRDKKVTLSKTVKKGLERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDWKDSRFFFGKNKVMAYALGKSQEDEIEKNIHVVSSALKGQCGLLFTNRSKDDVLMWFDVYEDEDFAKSGFISTEDVELKEGPLPEFPHSIEPQLRQLGLQTNLNKGVVTLFKDHTVCKKGDVLTPEQARIlkllkkkmakfkvllYLWYNKKEGTFENLLDREKTPMDIYDMeddennsneesd
Disordered region (IsUnstruct)
***************************DELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDWKDSRFFFGKNKVMAYALGKSQEDEIEKNIHVVSSALKGQCGLLFTNRSKDDVLMWFDVYEDEDFAKSGFISTEDV****************QLRQLGLQTNLNKGVVTLFKDHTVCKKGDVLTPEQARILKLLKKKMAKFKVLLYLWYNKKEGTFENLL************************
Disordered Region (DISOPRED)
***SKRDK*************RKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDWKDSRFFFGKNKVMAYALGKSQEDEIEKNIHVVSSALKGQCGLLFTNRSKDDVLMWFDVYEDEDFAKSGFISTEDVELKEGPLPEFPHSIEPQLRQLGLQTNLNKGVVTLFKDHTVCKKGDVLTPEQARILKLLKKKMAKFKVLLYLWYNKKEGTFENLLDREK********************
Disordered Region (DISEMBL)
************SKTVKKGLERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDWKDSRFFFGKNKVMAYALGKSQEDEIEKNIHVVSSALKGQCGLLFTNRSKDDVLMWFDVYEDEDFAKSGFISTEDVELKEGPLPEFPHSIEPQLRQLGLQTNLNKGVVTLFKDHTVCKKGDVLTPEQARILKLLKKKMAKFKVLLYLWYNKKEGTFENLLDREKTPMDIYDMED**********
Disordered Region (DISPRO)
******DKKVTLSKTVKKGLERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDWKDSRFFFGKNKVMAYALGKSQEDEIEKNIHVVSSALKGQCGLLFTNRSKDDVLMWFDVYEDEDFAKSGFISTEDVELKEGPLPEFPHSIEPQLRQLGLQTNLNKGVVTLFKDHTVCKKGDVLTPEQARILKLLKKKMAKFKVLLYLWYNKKEGTFENLLDREKTPMDIYDMED**********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPKSKRDKKVTLSKTxxxxxxxxxxxxxxxxxxxxxxxxxFVFSVQNMRNSKLKDVRNDWKDSRFFFGKNKVMAYALGKSQEDEIEKNIHVVSSALKGQCGLLFTNRSKDDVLMWFDVYEDEDFAKSGFISTEDVELKEGPLPEFPHSIEPQLRQLGLQTNLNKGVVTLFKDHTVCKKGDVLTPEQARILKLLKKKMAKFKVLLYLWYNKKEGTFENLLDREKTPMDIYDMEDDENNSNEESD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	243	2.2.26 [Sep-21-2011]
Q9D0I8	239	mRNA turnover protein 4 h	yes	N/A	0.905	0.920	0.613	6e-73
A4FV84	239	mRNA turnover protein 4 h	yes	N/A	0.905	0.920	0.604	1e-71
Q9UKD2	239	mRNA turnover protein 4 h	yes	N/A	0.905	0.920	0.595	2e-71
Q86HD3	223	mRNA turnover protein 4 h	yes	N/A	0.880	0.959	0.434	2e-49
Q9USZ6	241	mRNA turnover protein 4 h	yes	N/A	0.897	0.904	0.408	4e-44
Q7S302	252	mRNA turnover protein 4 h	N/A	N/A	0.897	0.865	0.368	7e-38
Q6FJ04	239	mRNA turnover protein 4 h	yes	N/A	0.897	0.912	0.346	6e-32
Q75DK9	236	mRNA turnover protein 4 h	yes	N/A	0.897	0.923	0.324	2e-31
P33201	236	mRNA turnover protein 4 O	yes	N/A	0.893	0.919	0.317	4e-27
O74109	342	Acidic ribosomal protein	yes	N/A	0.666	0.473	0.290	3e-12

>sp|Q9D0I8|MRT4_MOUSE mRNA turnover protein 4 homolog OS=Mus musculus GN=Mrto4 PE=2 SV=1

 Score =  273 bits (699), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 135/220 (61%), Positives = 167/220 (75%)

Query: 1   MPKSKRDKKVTLSKTVKKGLERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDW 60
           MPKSKRDKKV+L+KT KKGLE KQNL +EL K V+ Y  +F+FSV NMRNSKLKD+RN W
Sbjct: 1   MPKSKRDKKVSLTKTAKKGLELKQNLIEELRKCVDTYKYLFIFSVANMRNSKLKDIRNAW 60

Query: 61  KDSRFFFGKNKVMAYALGKSQEDEIEKNIHVVSSALKGQCGLLFTNRSKDDVLMWFDVYE 120
           K SR FFGKNKVM  ALG+S  DE + N+H VS  L+G+ GLLFTNR+K++V  WF  Y 
Sbjct: 61  KHSRMFFGKNKVMMVALGRSPSDEYKDNLHQVSKKLRGEVGLLFTNRTKEEVNEWFTKYT 120

Query: 121 DEDFAKSGFISTEDVELKEGPLPEFPHSIEPQLRQLGLQTNLNKGVVTLFKDHTVCKKGD 180
           + DFA++G  +T  V L  GPL +FPHS+EPQLRQLGL T L KGVVTL  D+ VCK+GD
Sbjct: 121 EMDFARAGNKATLTVSLDPGPLKQFPHSMEPQLRQLGLPTALKKGVVTLLSDYEVCKEGD 180

Query: 181 VLTPEQARILKLLKKKMAKFKVLLYLWYNKKEGTFENLLD 220
           VLTPEQARILKL   +MA+FKV++   ++ + G F+ + D
Sbjct: 181 VLTPEQARILKLFGYEMAEFKVIIKYMWDAQSGRFQQMDD 220

Involved in mRNA turnover and ribosome assembly.
Mus musculus (taxid: 10090)

>sp|A4FV84|MRT4_BOVIN mRNA turnover protein 4 homolog OS=Bos taurus GN=MRTO4 PE=2 SV=1

 Score =  270 bits (689), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 133/220 (60%), Positives = 166/220 (75%)

Query: 1   MPKSKRDKKVTLSKTVKKGLERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDW 60
           MPKSKRDKKV+L+KT KKGLE KQNL +EL K V+ Y  +F+FSV NMRNSKLKD+RN W
Sbjct: 1   MPKSKRDKKVSLTKTAKKGLELKQNLIEELRKCVDTYKYLFIFSVANMRNSKLKDIRNAW 60

Query: 61  KDSRFFFGKNKVMAYALGKSQEDEIEKNIHVVSSALKGQCGLLFTNRSKDDVLMWFDVYE 120
           K SR FFGKNKVM  ALG+S  DE + N+H VS  L+G+ GLLFTNR+K++V  WF  Y 
Sbjct: 61  KHSRMFFGKNKVMMVALGRSPSDEYKDNLHQVSKKLRGEVGLLFTNRTKEEVDEWFTKYT 120

Query: 121 DEDFAKSGFISTEDVELKEGPLPEFPHSIEPQLRQLGLQTNLNKGVVTLFKDHTVCKKGD 180
           + D+A++G  +T  V L  GPL +FPHS+EPQLRQLGL T L KGVVTL  D+ VCK+GD
Sbjct: 121 EMDYARAGNKATFTVNLDPGPLEQFPHSMEPQLRQLGLPTALKKGVVTLLSDYEVCKEGD 180

Query: 181 VLTPEQARILKLLKKKMAKFKVLLYLWYNKKEGTFENLLD 220
           VLTPEQAR+LKL   +MA+FKV +   ++ + G F+ + D
Sbjct: 181 VLTPEQARVLKLFGYEMAEFKVSIKYMWDAQSGRFQQMGD 220

Involved in mRNA turnover and ribosome assembly.

Bos taurus (taxid: 9913)

>sp|Q9UKD2|MRT4_HUMAN mRNA turnover protein 4 homolog OS=Homo sapiens GN=MRTO4 PE=1 SV=2

 Score =  268 bits (685), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 131/220 (59%), Positives = 165/220 (75%)

Query: 1   MPKSKRDKKVTLSKTVKKGLERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDW 60
           MPKSKRDKKV+L+KT KKGLE KQNL +EL K V+ Y  +F+FSV NMRNSKLKD+RN W
Sbjct: 1   MPKSKRDKKVSLTKTAKKGLELKQNLIEELRKCVDTYKYLFIFSVANMRNSKLKDIRNAW 60

Query: 61  KDSRFFFGKNKVMAYALGKSQEDEIEKNIHVVSSALKGQCGLLFTNRSKDDVLMWFDVYE 120
           K SR FFGKNKVM  ALG+S  DE + N+H VS  L+G+ GLLFTNR+K++V  WF  Y 
Sbjct: 61  KHSRMFFGKNKVMMVALGRSPSDEYKDNLHQVSKRLRGEVGLLFTNRTKEEVNEWFTKYT 120

Query: 121 DEDFAKSGFISTEDVELKEGPLPEFPHSIEPQLRQLGLQTNLNKGVVTLFKDHTVCKKGD 180
           + D+A++G  +   V L  GPL +FPHS+EPQLRQLGL T L +GVVTL  D+ VCK+GD
Sbjct: 121 EMDYARAGNKAAFTVSLDPGPLEQFPHSMEPQLRQLGLPTALKRGVVTLLSDYEVCKEGD 180

Query: 181 VLTPEQARILKLLKKKMAKFKVLLYLWYNKKEGTFENLLD 220
           VLTPEQAR+LKL   +MA+FKV +   ++ + G F+ + D
Sbjct: 181 VLTPEQARVLKLFGYEMAEFKVTIKYMWDSQSGRFQQMGD 220

Involved in mRNA turnover and ribosome assembly.

Homo sapiens (taxid: 9606)

>sp|Q86HD3|MRT4_DICDI mRNA turnover protein 4 homolog OS=Dictyostelium discoideum GN=mrt4 PE=3 SV=1

 Score =  196 bits (497), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 93/214 (43%), Positives = 146/214 (68%)

Query: 1   MPKSKRDKKVTLSKTVKKGLERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDW 60
           M KSKR+  V ++K  K   E+K+ L   +   V++Y  I++F+ +NMRN+KLK VR +W
Sbjct: 1   MVKSKRNVVVNMTKVTKNPGEKKKKLVSTIKDIVDQYKFIYLFTFENMRNNKLKSVRTEW 60

Query: 61  KDSRFFFGKNKVMAYALGKSQEDEIEKNIHVVSSALKGQCGLLFTNRSKDDVLMWFDVYE 120
             S+F FGKNKV++  LGKS+EDE++ N+H ++  L+G+CGL FTN  KD V  +F  Y 
Sbjct: 61  STSKFLFGKNKVLSVGLGKSEEDELKPNLHKLTEHLEGECGLFFTNEPKDKVFEYFTNYS 120

Query: 121 DEDFAKSGFISTEDVELKEGPLPEFPHSIEPQLRQLGLQTNLNKGVVTLFKDHTVCKKGD 180
           ++DF +SGF+S E + +KEGP+    HS+E  LR LGL T L  GV+ + +++T+C+ G 
Sbjct: 121 EKDFPRSGFVSEETITIKEGPIVGMTHSMETYLRGLGLPTTLKNGVIFVDREYTLCEAGV 180

Query: 181 VLTPEQARILKLLKKKMAKFKVLLYLWYNKKEGT 214
            +TPEQ+++LKL   ++++FK  +  ++N+ E T
Sbjct: 181 AVTPEQSQLLKLFNHEISEFKFHIKGFWNEDEFT 214

Involved in mRNA turnover and ribosome assembly.

Dictyostelium discoideum (taxid: 44689)

>sp|Q9USZ6|MRT4_SCHPO mRNA turnover protein 4 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC11G11.03 PE=3 SV=1

 Score =  177 bits (450), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 94/230 (40%), Positives = 140/230 (60%), Gaps = 12/230 (5%)

Query: 1   MPKSKRDKKVTLSKTVKKGLERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDW 60
           MPKS+R K +TL++T KKG E K  L   + ++++ ++ +++F V NMRN+ LK +R+DW
Sbjct: 1   MPKSRRSKVLTLAQTEKKGHEGKAALFSGVQQSLDSFDYMWIFDVTNMRNTYLKRIRDDW 60

Query: 61  KDSRFFFGKNKVMAYALGKSQEDEIEKNIHVVSSALKGQCGLLFTNRSKDDVLMWFDVYE 120
           K SR F GK KVMA ALG + E+E  +N+  ++  L G  GLLFTN   D+V+ +F+ + 
Sbjct: 61  KGSRIFMGKTKVMAKALGHTPEEEHAENVSKLTKLLHGAVGLLFTNSKPDEVIGYFESFV 120

Query: 121 DEDFAKSGFISTEDVELKEGPL----PEFP--------HSIEPQLRQLGLQTNLNKGVVT 168
             DFA++G ++     +  GP+     + P        H++EPQ+RQLG+ T L  GVVT
Sbjct: 121 QNDFARAGAVAPFTHVIPAGPVYSRAGQIPVEDDILLTHTLEPQVRQLGMPTVLKNGVVT 180

Query: 169 LFKDHTVCKKGDVLTPEQARILKLLKKKMAKFKVLLYLWYNKKEGTFENL 218
           L  D  +C +G  L   Q R+LKL     A+FKV L  +Y+KK  + E L
Sbjct: 181 LLADFPLCTEGQQLDSRQTRLLKLFGITAAEFKVGLLGYYSKKGASVEFL 230

Involved in mRNA turnover and ribosome assembly.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q7S302|MRT4_NEUCR mRNA turnover protein 4 homolog OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=NCU07547 PE=3 SV=1

 Score =  157 bits (397), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 87/236 (36%), Positives = 131/236 (55%), Gaps = 18/236 (7%)

Query: 1   MPKSKRDKKVTLSKTVKKGLERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDW 60
           MPKSKR K   L++  KK  E+K+ L + + + +  Y + FVFS+ NMRN+ LKDVR + 
Sbjct: 1   MPKSKRAKVYNLTQVTKKNREQKEKLFENIRECIPNYQHCFVFSIDNMRNNYLKDVRKEL 60

Query: 61  KDSRFFFGKNKVMAYALGKSQEDEIEKNIHVVSSALKGQCGLLFTNRSKDDVLMWFDVYE 120
            D R FFGK K+ A ALG + ED     +  +S  L G  GL+FTNR   ++  +F    
Sbjct: 61  NDCRIFFGKTKLTARALGTTPEDAQADGLDKLSKYLSGSVGLIFTNRDPSEIKDYFVNLT 120

Query: 121 DEDFAKSGFISTEDVELKEGPL----PEFP--------HSIEPQLRQLGLQTNLNKGVVT 168
             DFA++G ++T  + +  GPL     E P        H++EP+LR+LG+ T + KG V 
Sbjct: 121 QVDFARAGSVATRTITIPSGPLYSTGGEVPAEHDVPVSHTLEPELRRLGMPTRMVKGKVC 180

Query: 169 L------FKDHTVCKKGDVLTPEQARILKLLKKKMAKFKVLLYLWYNKKEGTFENL 218
           L        D+ +CK+G+ L   Q R+LKL    +++F+V L  +++   G    L
Sbjct: 181 LGDEAGEGDDYVICKEGETLDSRQTRLLKLFSICLSEFRVKLLAYWSAASGEVTEL 236

Involved in mRNA turnover and ribosome assembly.

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

>sp|Q6FJ04|MRT4_CANGA mRNA turnover protein 4 homolog OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=MRT4 PE=3 SV=1

 Score =  137 bits (346), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 80/231 (34%), Positives = 128/231 (55%), Gaps = 13/231 (5%)

Query: 1   MPKSKRDKKVTLSKTVKKGLERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDW 60
           MP+SKR K VTL++T KKG E K+ + DE+ +A++ Y  +FV  + ++R   L+++R  W
Sbjct: 1   MPRSKRSKLVTLAQTDKKGRENKERIFDEVREALDTYKYVFVLQLDDVRTPVLQEIREAW 60

Query: 61  KDSRFFFGKNKVMAYALGKSQEDEIEKNIHVVSSALKGQCGLLFTNRSKDDVLMWFDVYE 120
             S+   GK KV+  ALG ++E E ++N+  ++    G  GLLFTN + D V  +F+ Y 
Sbjct: 61  VGSKLLMGKRKVLEKALGTTREQEYKENLSKLTKYCSGVIGLLFTNETLDTVKEYFEAYS 120

Query: 121 DEDFAKSGFISTEDVELKEG---------PLPE---FPHSIEPQLR-QLGLQTNLNKGVV 167
             D+++    +    E+ EG         P+ E     HS+EP LR +  + T +  G +
Sbjct: 121 RLDYSRPNSRAPITFEVPEGIVYSRGGQIPIEEDVPMAHSLEPTLRNKYEMPTKIKAGKI 180

Query: 168 TLFKDHTVCKKGDVLTPEQARILKLLKKKMAKFKVLLYLWYNKKEGTFENL 218
           TL   + VCK+G  L   QA ILK     +A+FKV++  +Y+ +  T   L
Sbjct: 181 TLEAPYLVCKEGQKLDVRQALILKQFGVALAQFKVIISAYYDNESSTVSEL 231

Involved in mRNA turnover and ribosome assembly.

Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) (taxid: 284593)

>sp|Q75DK9|MRT4_ASHGO mRNA turnover protein 4 homolog OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=MRT4 PE=3 SV=1

 Score =  135 bits (340), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 75/231 (32%), Positives = 132/231 (57%), Gaps = 13/231 (5%)

Query: 1   MPKSKRDKKVTLSKTVKKGLERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDW 60
           MP+SKR K VTL++T KKG E K+ + DE+ +A++ Y  ++V  ++++R   L+++R+ W
Sbjct: 1   MPRSKRSKLVTLAQTEKKGRENKERIFDEVRQALDTYRYVWVLRLEDVRTPVLQEIRSAW 60

Query: 61  KDSRFFFGKNKVMAYALGKSQEDEIEKNIHVVSSALKGQCGLLFTNRSKDDVLMWFDVYE 120
             S+   G+ KV+  ALG ++E E ++N+  +    +G CGLLFT+ + + V  +F  Y 
Sbjct: 61  AGSKLIMGRRKVLEKALGGTRETEYKENVSGLVKQCEGMCGLLFTDETPETVTAYFREYR 120

Query: 121 DEDFAKSGFISTEDVEL-------KEGPLP---EFP--HSIEPQLR-QLGLQTNLNKGVV 167
             D++++   +   VE+       + G +P   + P  HS+EP LR +  + T +  G +
Sbjct: 121 KADYSRAKSRAPLRVEIPAGVVYSRGGQVPAEDDVPMVHSLEPTLRNKFKMPTRIQNGKI 180

Query: 168 TLFKDHTVCKKGDVLTPEQARILKLLKKKMAKFKVLLYLWYNKKEGTFENL 218
           TL + + VC+ G+ L   QA ILK      A+F+V L  +Y+ +    E +
Sbjct: 181 TLEQPYLVCEAGETLDVRQALILKQFGVAAAEFRVKLAAYYDGEAAAVEEV 231

Involved in mRNA turnover and ribosome assembly.

Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) (taxid: 284811)

>sp|P33201|MRT4_YEAST mRNA turnover protein 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MRT4 PE=1 SV=1

 Score =  121 bits (304), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 73/230 (31%), Positives = 124/230 (53%), Gaps = 13/230 (5%)

Query: 1   MPKSKRDKKVTLSKTVKKGLERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDW 60
           MP+SKR K VTL++T KKG E K+ + DE+ +A++ Y  ++V  + ++R   L+++R  W
Sbjct: 1   MPRSKRSKLVTLAQTDKKGRENKERIFDEVREALDTYRYVWVLHLDDVRTPVLQEIRTSW 60

Query: 61  KDSRFFFGKNKVMAYALGKSQEDEIEKNIHVVSSALKGQCGLLFTNRSKDDVLMWFDVYE 120
             S+   GK KV+  ALG+ +E+E ++N++ +S    G  GLLFT+   + V  +F  Y 
Sbjct: 61  AGSKLIMGKRKVLQKALGEKREEEYKENLYQLSKLCSGVTGLLFTDEDVNTVKEYFKSYV 120

Query: 121 DEDFAKSGFISTEDVELKEG---------PLPE---FPHSIEPQLR-QLGLQTNLNKGVV 167
             D+++    +     + EG         P  E     HS+EP +R +  + T +  G +
Sbjct: 121 RSDYSRPNTKAPLTFTIPEGIVYSRGGQIPAEEDVPMIHSLEPTMRNKFEIPTKIKAGKI 180

Query: 168 TLFKDHTVCKKGDVLTPEQARILKLLKKKMAKFKVLLYLWYNKKEGTFEN 217
           T+   + VC +G+ L   QA ILK      ++FKV +  +Y+    T E+
Sbjct: 181 TIDSPYLVCTEGEKLDVRQALILKQFGIAASEFKVKVSAYYDNDSSTVES 230

Involved in mRNA turnover and ribosome assembly.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|O74109|RLA0_PYRHO Acidic ribosomal protein P0 homolog OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=rplP0 PE=1 SV=1

 Score = 72.0 bits (175), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 83/172 (48%), Gaps = 10/172 (5%)

Query: 28  DELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDWKDSRFFF--GKNKVMAYALGKSQED-- 83
           +EL K ++ Y  I +  V +M    L  +R   +++       +N ++  A+ K+ ++  
Sbjct: 13  EELAKLIKSYPVIALVDVSSMPAYPLSQMRRLIRENGGLLRVSRNTLIELAIKKAAKELG 72

Query: 84  --EIEKNIHVVSSALKGQCGLLFTNRSKDDVLMWFDVYEDEDFAKSGFISTEDVELKEGP 141
             E+EK +  +        G+L TN +   +  +         AK G +  +DV +  GP
Sbjct: 73  KPELEKLVEYIDRG----AGILVTNMNPFKLYKFLQQNRQPAPAKPGAVVPKDVVVPAGP 128

Query: 142 LPEFPHSIEPQLRQLGLQTNLNKGVVTLFKDHTVCKKGDVLTPEQARILKLL 193
            P  P  I  Q++ LG+   + KG VT+ KD TV K G+V+TPE A IL  L
Sbjct: 129 TPLAPGPIVGQMQALGIPARIEKGKVTIQKDTTVLKAGEVITPELANILNAL 180

Ribosomal protein P0 is the functional equivalent of E.coli protein L10.

Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) (taxid: 70601)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	243
383863221	243	PREDICTED: mRNA turnover protein 4 homol	0.876	0.876	0.624	1e-74
328786487	243	PREDICTED: mRNA turnover protein 4 homol	0.876	0.876	0.629	8e-74
380017734	239	PREDICTED: mRNA turnover protein 4 homol	0.967	0.983	0.577	5e-73
392876584	236	mRNA turnover 4-like protein [Callorhinc	0.967	0.995	0.570	2e-72
156544911	236	PREDICTED: mRNA turnover protein 4 homol	0.905	0.932	0.583	1e-71
340720236	242	PREDICTED: mRNA turnover protein 4 homol	0.979	0.983	0.561	2e-71
387913858	236	mRNA turnover 4-like protein [Callorhinc	0.967	0.995	0.565	2e-71
73950287	240	PREDICTED: mRNA turnover protein 4 homol	0.897	0.908	0.614	4e-71
51316521	239	RecName: Full=mRNA turnover protein 4 ho	0.905	0.920	0.613	4e-71
350423400	242	PREDICTED: mRNA turnover protein 4 homol	0.979	0.983	0.557	4e-71

>gi|383863221|ref|XP_003707080.1| PREDICTED: mRNA turnover protein 4 homolog [Megachile rotundata]

 Score =  285 bits (728), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 133/213 (62%), Positives = 168/213 (78%)

Query: 1   MPKSKRDKKVTLSKTVKKGLERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDW 60
           MPKSKRDKK++L+KT KKGL  KQ + +++   VEKY  IF+ SV NMRN+KLKD+R +W
Sbjct: 1   MPKSKRDKKISLTKTSKKGLALKQQIVEDVRNCVEKYVRIFLISVHNMRNNKLKDLRAEW 60

Query: 61  KDSRFFFGKNKVMAYALGKSQEDEIEKNIHVVSSALKGQCGLLFTNRSKDDVLMWFDVYE 120
           KDSRFFFGKNKV+A ALGKS +DE+ + IH +S+ALKGQCGLLFTNR K +VL W + YE
Sbjct: 61  KDSRFFFGKNKVIALALGKSSKDEVTEGIHKLSAALKGQCGLLFTNRKKHEVLKWMEEYE 120

Query: 121 DEDFAKSGFISTEDVELKEGPLPEFPHSIEPQLRQLGLQTNLNKGVVTLFKDHTVCKKGD 180
           + D+A+SGF+  E + L EGP+P+FPHSIEP LRQLG+ T L KG+VTL K++TVCK G 
Sbjct: 121 EADYARSGFVVQETITLPEGPMPDFPHSIEPHLRQLGMPTALQKGIVTLIKEYTVCKSGQ 180

Query: 181 VLTPEQARILKLLKKKMAKFKVLLYLWYNKKEG 213
            LTPEQARILKLL K +A FK++    ++KK G
Sbjct: 181 TLTPEQARILKLLDKPLATFKMIPLGVFSKKHG 213

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328786487|ref|XP_393683.3| PREDICTED: mRNA turnover protein 4 homolog [Apis mellifera]

 Score =  282 bits (722), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 134/213 (62%), Positives = 169/213 (79%)

Query: 1   MPKSKRDKKVTLSKTVKKGLERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDW 60
           MPKSKRDKK++L+KT KKGL  KQ + +++   VEKY  IF+ SV NMRN+KLKD+R++W
Sbjct: 1   MPKSKRDKKISLTKTSKKGLALKQQIVEDVRNCVEKYARIFLLSVHNMRNNKLKDLRSEW 60

Query: 61  KDSRFFFGKNKVMAYALGKSQEDEIEKNIHVVSSALKGQCGLLFTNRSKDDVLMWFDVYE 120
           KDSRFFFGKNKV+A ALGKS E+E+ +N+H +S AL+GQCGLLFTNRSK +VL W   YE
Sbjct: 61  KDSRFFFGKNKVIALALGKSSENEVAENLHKLSLALRGQCGLLFTNRSKKEVLKWMREYE 120

Query: 121 DEDFAKSGFISTEDVELKEGPLPEFPHSIEPQLRQLGLQTNLNKGVVTLFKDHTVCKKGD 180
           + D+A+SGFI+ E + L EGP+P+F HSIEP LRQLG+ T L KGVVTL K++TVCK G 
Sbjct: 121 EIDYARSGFITQETITLSEGPIPDFSHSIEPHLRQLGMPTALQKGVVTLIKEYTVCKMGQ 180

Query: 181 VLTPEQARILKLLKKKMAKFKVLLYLWYNKKEG 213
            LTPEQARILKLL K +A FK++    ++KK G
Sbjct: 181 ALTPEQARILKLLDKPLATFKLIPLGVFSKKYG 213

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380017734|ref|XP_003692802.1| PREDICTED: mRNA turnover protein 4 homolog [Apis florea]

 Score =  280 bits (715), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 138/239 (57%), Positives = 182/239 (76%), Gaps = 4/239 (1%)

Query: 1   MPKSKRDKKVTLSKTVKKGLERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDW 60
           MPKSKRDKK++L+KT KKGL  KQ + +++   VEKY  IF+ SV NMRN+KLKD+R++W
Sbjct: 1   MPKSKRDKKISLTKTSKKGLALKQQIVEDVRNCVEKYARIFLLSVHNMRNNKLKDLRSEW 60

Query: 61  KDSRFFFGKNKVMAYALGKSQEDEIEKNIHVVSSALKGQCGLLFTNRSKDDVLMWFDVYE 120
           KDSRFFFGKNKV+A ALGKS E+E+ +N+H +S AL+GQCGLLFTNRSK +VL W   YE
Sbjct: 61  KDSRFFFGKNKVIALALGKSPENEVVENLHKLSLALRGQCGLLFTNRSKKEVLKWMREYE 120

Query: 121 DEDFAKSGFISTEDVELKEGPLPEFPHSIEPQLRQLGLQTNLNKGVVTLFKDHTVCKKGD 180
           + D+A+SGFI+ E + L EGP+P+F HSIEP LRQLG+ T L KGVVTL K++TVCK G 
Sbjct: 121 EIDYARSGFITQETITLPEGPIPDFSHSIEPHLRQLGMPTALQKGVVTLIKEYTVCKIGQ 180

Query: 181 VLTPEQARILKLLKKKMAKFKVLLYLWYNKKEGTFENLLDREKTPMDIYD---MEDDEN 236
            LTPEQARILKL  K +A FK++    ++KK G ++  + ++ T  ++ +   ME+ EN
Sbjct: 181 ALTPEQARILKLFGKPLATFKLIPLGVFSKKYG-YKQFISQDDTKENLEEQMAMEEIEN 238

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|392876584|gb|AFM87124.1| mRNA turnover 4-like protein [Callorhinchus milii] gi|392877480|gb|AFM87572.1| mRNA turnover 4-like protein [Callorhinchus milii] gi|392880138|gb|AFM88901.1| mRNA turnover 4-like protein [Callorhinchus milii]

 Score =  277 bits (709), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 134/235 (57%), Positives = 176/235 (74%)

Query: 1   MPKSKRDKKVTLSKTVKKGLERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDW 60
           MP+S+RDKKV+L+KT KKGLE KQNL +EL K V+ Y ++F+FS++NMRN+KLKD+RN W
Sbjct: 1   MPRSRRDKKVSLTKTAKKGLEVKQNLIEELRKCVDTYKHLFIFSIKNMRNNKLKDIRNAW 60

Query: 61  KDSRFFFGKNKVMAYALGKSQEDEIEKNIHVVSSALKGQCGLLFTNRSKDDVLMWFDVYE 120
           K SRFFFGKNKVMA ALGK   DE ++ +H VS  L G+ GLLFT+R+K++V+ WFD + 
Sbjct: 61  KHSRFFFGKNKVMALALGKGPADEYKEGLHKVSKELSGEVGLLFTSRTKEEVIEWFDQFS 120

Query: 121 DEDFAKSGFISTEDVELKEGPLPEFPHSIEPQLRQLGLQTNLNKGVVTLFKDHTVCKKGD 180
           + DFA+SG  +T  V L  GPL +F HS+EPQLRQLGL T+L KGVV L  D+ VCK GD
Sbjct: 121 ENDFARSGNQATMAVTLDAGPLSQFTHSMEPQLRQLGLPTSLKKGVVVLLSDYDVCKAGD 180

Query: 181 VLTPEQARILKLLKKKMAKFKVLLYLWYNKKEGTFENLLDREKTPMDIYDMEDDE 235
           +LTPEQAR+LKLL  +MA+FKV +   +N + G FE L   +++      ME++E
Sbjct: 181 ILTPEQARLLKLLGLEMAEFKVTISCMWNSETGVFEKLAAMDESEKSSDKMEEEE 235

Source: Callorhinchus milii

Species: Callorhinchus milii

Genus: Callorhinchus

Family: Callorhinchidae

Order: Chimaeriformes

Class: Chondrichthyes

Phylum: Chordata

Superkingdom: Eukaryota

>gi|156544911|ref|XP_001599473.1| PREDICTED: mRNA turnover protein 4 homolog [Nasonia vitripennis]

 Score =  275 bits (703), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 129/221 (58%), Positives = 167/221 (75%), Gaps = 1/221 (0%)

Query: 1   MPKSKRDKKVTLSKTVKKGLERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDW 60
           MPKSKRDKK++L+KT KKGLE KQ +  ++    EKY NI +FSV+NMRN+KLKD+R +W
Sbjct: 1   MPKSKRDKKISLTKTSKKGLELKQQIVQDVRTCAEKYKNIILFSVENMRNNKLKDLRVEW 60

Query: 61  KDSRFFFGKNKVMAYALGKSQEDEIEKNIHVVSSALKGQCGLLFTNRSKDDVLMWFDVYE 120
           + SRFFFGKNK++A ALG ++E EI + IH++SS L+GQCGL FTN  K  VL W   Y 
Sbjct: 61  RGSRFFFGKNKIVALALGTTKESEIAEGIHILSSNLQGQCGLFFTNEKKKKVLQWMREYG 120

Query: 121 DEDFAKSGFISTEDVELKEGPLPEFPHSIEPQLRQLGLQTNLNKGVVTLFKDHTVCKKGD 180
           ++D+A+SGF+++E +EL  GPLP+F HSIEP LRQLG+ T+L KGVVTL KD+TVC +G 
Sbjct: 121 EDDYARSGFVTSETIELPAGPLPDFSHSIEPHLRQLGMPTSLQKGVVTLLKDYTVCTEGQ 180

Query: 181 VLTPEQARILKLLKKKMAKFKVLLYLWYNKKEGTFENLLDR 221
            LTPEQARILKLL + +A FK+     Y KK G +  L D+
Sbjct: 181 TLTPEQARILKLLGRPLATFKLTPLGIYTKKSG-YAQLADQ 220

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340720236|ref|XP_003398547.1| PREDICTED: mRNA turnover protein 4 homolog [Bombus terrestris]

 Score =  274 bits (701), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 136/242 (56%), Positives = 180/242 (74%), Gaps = 4/242 (1%)

Query: 1   MPKSKRDKKVTLSKTVKKGLERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDW 60
           MPKSKRDKK++L+KT KKGL  KQ + +++   VEKY+ IF+ SV NMRN+KLKD+R++W
Sbjct: 1   MPKSKRDKKISLTKTNKKGLALKQQIVEDVRNCVEKYDRIFLLSVHNMRNNKLKDLRSEW 60

Query: 61  KDSRFFFGKNKVMAYALGKSQEDEIEKNIHVVSSALKGQCGLLFTNRSKDDVLMWFDVYE 120
           KDSRFFFGKNKV+A A GK  E E  + +H +S AL+GQCGLLFTNRSK +VL W + YE
Sbjct: 61  KDSRFFFGKNKVIALAFGKLPETEAAEGLHKLSLALRGQCGLLFTNRSKKEVLKWMEEYE 120

Query: 121 DEDFAKSGFISTEDVELKEGPLPEFPHSIEPQLRQLGLQTNLNKGVVTLFKDHTVCKKGD 180
           + D+A+SGF++ E + L EGP+PEF HSIEP LRQLG+ T L KGVVTL KD+ VCK+G 
Sbjct: 121 EIDYARSGFVAQETIVLHEGPMPEFSHSIEPHLRQLGMPTALQKGVVTLIKDYIVCKEGQ 180

Query: 181 VLTPEQARILKLLKKKMAKFKVLLYLWYNKKEGTFENLL---DREKTPMDIYDMEDDENN 237
            L PEQARILKLL K +A F+++    ++KK G ++ L+   D ++   +  D+E+ EN 
Sbjct: 181 TLNPEQARILKLLDKPLATFRLIPLGVFSKKHG-YKQLISQHDVKENMAEQMDIEETENI 239

Query: 238 SN 239
            N
Sbjct: 240 DN 241

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|387913858|gb|AFK10538.1| mRNA turnover 4-like protein [Callorhinchus milii]

 Score =  274 bits (701), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 133/235 (56%), Positives = 175/235 (74%)

Query: 1   MPKSKRDKKVTLSKTVKKGLERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDW 60
           MP+S+RDKKV+L+KT KKGLE KQN  +EL K V+ Y ++F+FS++NMRN+KLKD+RN W
Sbjct: 1   MPRSRRDKKVSLTKTAKKGLEVKQNPIEELRKCVDTYKHLFIFSIKNMRNNKLKDIRNAW 60

Query: 61  KDSRFFFGKNKVMAYALGKSQEDEIEKNIHVVSSALKGQCGLLFTNRSKDDVLMWFDVYE 120
           K SRFFFGKNKVMA ALGK   DE ++ +H VS  L G+ GLLFT+R+K++V+ WFD + 
Sbjct: 61  KHSRFFFGKNKVMALALGKGPADEYKEGLHKVSKELSGEVGLLFTSRTKEEVIEWFDQFS 120

Query: 121 DEDFAKSGFISTEDVELKEGPLPEFPHSIEPQLRQLGLQTNLNKGVVTLFKDHTVCKKGD 180
           + DFA+SG  +T  V L  GPL +F HS+EPQLRQLGL T+L KGVV L  D+ VCK GD
Sbjct: 121 ENDFARSGNQATMAVTLDAGPLSQFTHSMEPQLRQLGLPTSLKKGVVVLLSDYDVCKAGD 180

Query: 181 VLTPEQARILKLLKKKMAKFKVLLYLWYNKKEGTFENLLDREKTPMDIYDMEDDE 235
           +LTPEQAR+LKLL  +MA+FKV +   +N + G FE L   +++      ME++E
Sbjct: 181 ILTPEQARLLKLLGLEMAEFKVTISCMWNSETGVFEKLAAMDESEKSSDKMEEEE 235

Source: Callorhinchus milii

Species: Callorhinchus milii

Genus: Callorhinchus

Family: Callorhinchidae

Order: Chimaeriformes

Class: Chondrichthyes

Phylum: Chordata

Superkingdom: Eukaryota

>gi|73950287|ref|XP_544532.2| PREDICTED: mRNA turnover protein 4 homolog isoform 1 [Canis lupus familiaris]

 Score =  273 bits (699), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 134/218 (61%), Positives = 165/218 (75%)

Query: 1   MPKSKRDKKVTLSKTVKKGLERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDW 60
           MPKSKRDKKV+L+KT KKGLE KQNL +EL K V+ Y  +F+FSV NMRNSKLKD+RN W
Sbjct: 1   MPKSKRDKKVSLTKTAKKGLELKQNLIEELRKCVDTYKYLFIFSVANMRNSKLKDIRNAW 60

Query: 61  KDSRFFFGKNKVMAYALGKSQEDEIEKNIHVVSSALKGQCGLLFTNRSKDDVLMWFDVYE 120
           K SR FFGKNKVM  ALG+S  DE + N+H VS  LKG+ GLLFTNR+K++V  WF  Y 
Sbjct: 61  KHSRMFFGKNKVMMVALGRSPADEYKDNLHQVSKKLKGEVGLLFTNRTKEEVNEWFTKYT 120

Query: 121 DEDFAKSGFISTEDVELKEGPLPEFPHSIEPQLRQLGLQTNLNKGVVTLFKDHTVCKKGD 180
           + DFA++G  +T  V L  GPL +FPHS+EPQLRQLGL T L +GVVTL  DH VCK+GD
Sbjct: 121 EMDFARAGNKATFTVTLDPGPLEQFPHSMEPQLRQLGLPTALKRGVVTLLSDHEVCKEGD 180

Query: 181 VLTPEQARILKLLKKKMAKFKVLLYLWYNKKEGTFENL 218
           VLTPEQAR+LKL   +MA+FKV +   ++ + G F+ +
Sbjct: 181 VLTPEQARVLKLFGYEMAEFKVTIRYMWDAQSGRFQQM 218

Source: Canis lupus familiaris

Species: Canis lupus

Genus: Canis

Family: Canidae

Order: Carnivora

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|51316521|sp|Q9D0I8.1|MRT4_MOUSE RecName: Full=mRNA turnover protein 4 homolog gi|12847477|dbj|BAB27585.1| unnamed protein product [Mus musculus] gi|187950969|gb|AAI38222.1| Mrto4 protein [Mus musculus] gi|219519534|gb|AAI45206.1| Mrto4 protein [Mus musculus]

 Score =  273 bits (699), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 135/220 (61%), Positives = 167/220 (75%)

Query: 1   MPKSKRDKKVTLSKTVKKGLERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDW 60
           MPKSKRDKKV+L+KT KKGLE KQNL +EL K V+ Y  +F+FSV NMRNSKLKD+RN W
Sbjct: 1   MPKSKRDKKVSLTKTAKKGLELKQNLIEELRKCVDTYKYLFIFSVANMRNSKLKDIRNAW 60

Query: 61  KDSRFFFGKNKVMAYALGKSQEDEIEKNIHVVSSALKGQCGLLFTNRSKDDVLMWFDVYE 120
           K SR FFGKNKVM  ALG+S  DE + N+H VS  L+G+ GLLFTNR+K++V  WF  Y 
Sbjct: 61  KHSRMFFGKNKVMMVALGRSPSDEYKDNLHQVSKKLRGEVGLLFTNRTKEEVNEWFTKYT 120

Query: 121 DEDFAKSGFISTEDVELKEGPLPEFPHSIEPQLRQLGLQTNLNKGVVTLFKDHTVCKKGD 180
           + DFA++G  +T  V L  GPL +FPHS+EPQLRQLGL T L KGVVTL  D+ VCK+GD
Sbjct: 121 EMDFARAGNKATLTVSLDPGPLKQFPHSMEPQLRQLGLPTALKKGVVTLLSDYEVCKEGD 180

Query: 181 VLTPEQARILKLLKKKMAKFKVLLYLWYNKKEGTFENLLD 220
           VLTPEQARILKL   +MA+FKV++   ++ + G F+ + D
Sbjct: 181 VLTPEQARILKLFGYEMAEFKVIIKYMWDAQSGRFQQMDD 220

Source: Mus musculus

Species: Mus musculus

Genus: Mus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|350423400|ref|XP_003493470.1| PREDICTED: mRNA turnover protein 4 homolog [Bombus impatiens]

 Score =  273 bits (699), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 135/242 (55%), Positives = 178/242 (73%), Gaps = 4/242 (1%)

Query: 1   MPKSKRDKKVTLSKTVKKGLERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDW 60
           MPKSKRDKK++L+KT KKGL  KQ + +++   VEKY+ IF+ SV NMRN+KLKD+R++W
Sbjct: 1   MPKSKRDKKISLTKTNKKGLALKQQIVEDVRSCVEKYDRIFLLSVHNMRNNKLKDLRSEW 60

Query: 61  KDSRFFFGKNKVMAYALGKSQEDEIEKNIHVVSSALKGQCGLLFTNRSKDDVLMWFDVYE 120
           KDSRFFFGKNKV+A A GK  E E  + +H +S AL+GQCGLLFTNRSK +VL W + YE
Sbjct: 61  KDSRFFFGKNKVIALAFGKLPETEAAEGLHKLSLALRGQCGLLFTNRSKKEVLKWMEEYE 120

Query: 121 DEDFAKSGFISTEDVELKEGPLPEFPHSIEPQLRQLGLQTNLNKGVVTLFKDHTVCKKGD 180
           + D+A+SGF++ E + L+EGP+PEF HSIEP  RQLG+ T L KGVVTL KD+ VCK+G 
Sbjct: 121 EIDYARSGFVAQETIVLREGPMPEFSHSIEPHFRQLGMPTALQKGVVTLIKDYIVCKEGQ 180

Query: 181 VLTPEQARILKLLKKKMAKFKVLLYLWYNKKEGTFENLLDREKTPMDI---YDMEDDENN 237
            L PEQARILKLL K +A FK +    ++KK G ++ L+ +     ++    D+E+ EN 
Sbjct: 181 TLNPEQARILKLLDKPLATFKFIPLGIFSKKHG-YKELISQHDVKENMEEQMDIEETENI 239

Query: 238 SN 239
            N
Sbjct: 240 DN 241

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	243
UNIPROTKB|E2RG17	240	MRTO4 "Uncharacterized protein	0.893	0.904	0.584	4.2e-63
MGI|MGI:1917152	239	Mrto4 "MRT4, mRNA turnover 4,	0.901	0.916	0.583	6.9e-63
UNIPROTKB|A4FV84	239	MRTO4 "mRNA turnover protein 4	0.901	0.916	0.574	1.8e-62
UNIPROTKB|Q9UKD2	239	MRTO4 "mRNA turnover protein 4	0.901	0.916	0.565	7.9e-62
UNIPROTKB|F1SUQ2	241	MRTO4 "Uncharacterized protein	0.901	0.908	0.574	1e-61
ZFIN|ZDB-GENE-050417-142	242	mrto4 "mRNA turnover 4 homolog	0.905	0.909	0.55	1.5e-60
UNIPROTKB|F1P353	249	MRTO4 "Uncharacterized protein	0.930	0.907	0.539	3.1e-60
UNIPROTKB|E2QYG0	233	E2QYG0 "Uncharacterized protei	0.748	0.781	0.609	1.3e-54
FB|FBgn0033485	256	RpLP0-like "Ribosomal protein	0.777	0.738	0.573	2.6e-54
UNIPROTKB|F1M970	232	F1M970 "Uncharacterized protei	0.864	0.905	0.532	1.5e-53

UNIPROTKB|E2RG17 MRTO4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 644 (231.8 bits), Expect = 4.2e-63, P = 4.2e-63
 Identities = 128/219 (58%), Positives = 156/219 (71%)

Query:     1 MPKSKRDKKVTLSKTVKKGLERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDW 60
             MPKSKRDKKV+L+KT KKGLE KQNL +EL K V+ Y  +F+FSV NMRNSKLKD+RN W
Sbjct:     1 MPKSKRDKKVSLTKTAKKGLELKQNLIEELRKCVDTYKYLFIFSVANMRNSKLKDIRNAW 60

Query:    61 KDSRFFFGKNKVMAYALGKSQEDEIEKNIHVVSSALKGQCGLLFTNRSKDDVLMWFDVYE 120
             K SR FFGKNKVM  ALG+S  DE + N+H VS  LKG+ GLLFTNR+K++V  WF  Y 
Sbjct:    61 KHSRMFFGKNKVMMVALGRSPADEYKDNLHQVSKKLKGEVGLLFTNRTKEEVNEWFTKYT 120

Query:   121 DEDFAKSGFISTEDVELKEGPLPEFPHSIEPQLRQLGLQTNLNKGVVTLFKDHTVCKKGD 180
             + DFA++G  +T  V L  GPL +FPHS+EPQLRQLGL T L +GVVTL  DH VCK+GD
Sbjct:   121 EMDFARAGNKATFTVTLDPGPLEQFPHSMEPQLRQLGLPTALKRGVVTLLSDHEVCKEGD 180

Query:   181 VLTPEQARIXXXXXXXXXXXXXXX-YLWYNKKEGTFENL 218
             VLTPEQAR+                Y+W + + G F+ +
Sbjct:   181 VLTPEQARVLKLFGYEMAEFKVTIRYMW-DAQSGRFQQM 218

GO:0005840 "ribosome" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

MGI|MGI:1917152 Mrto4 "MRT4, mRNA turnover 4, homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 642 (231.1 bits), Expect = 6.9e-63, P = 6.9e-63
 Identities = 129/221 (58%), Positives = 157/221 (71%)

Query:     1 MPKSKRDKKVTLSKTVKKGLERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDW 60
             MPKSKRDKKV+L+KT KKGLE KQNL +EL K V+ Y  +F+FSV NMRNSKLKD+RN W
Sbjct:     1 MPKSKRDKKVSLTKTAKKGLELKQNLIEELRKCVDTYKYLFIFSVANMRNSKLKDIRNAW 60

Query:    61 KDSRFFFGKNKVMAYALGKSQEDEIEKNIHVVSSALKGQCGLLFTNRSKDDVLMWFDVYE 120
             K SR FFGKNKVM  ALG+S  DE + N+H VS  L+G+ GLLFTNR+K++V  WF  Y 
Sbjct:    61 KHSRMFFGKNKVMMVALGRSPSDEYKDNLHQVSKKLRGEVGLLFTNRTKEEVNEWFTKYT 120

Query:   121 DEDFAKSGFISTEDVELKEGPLPEFPHSIEPQLRQLGLQTNLNKGVVTLFKDHTVCKKGD 180
             + DFA++G  +T  V L  GPL +FPHS+EPQLRQLGL T L KGVVTL  D+ VCK+GD
Sbjct:   121 EMDFARAGNKATLTVSLDPGPLKQFPHSMEPQLRQLGLPTALKKGVVTLLSDYEVCKEGD 180

Query:   181 VLTPEQARIXXXXXXXXXXXXXXX-YLWYNKKEGTFENLLD 220
             VLTPEQARI                Y+W + + G F+ + D
Sbjct:   181 VLTPEQARILKLFGYEMAEFKVIIKYMW-DAQSGRFQQMDD 220

GO:0003674 "molecular_function" evidence=ND

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

UNIPROTKB|A4FV84 MRTO4 "mRNA turnover protein 4 homolog" [Bos taurus (taxid:9913)]

 Score = 638 (229.6 bits), Expect = 1.8e-62, P = 1.8e-62
 Identities = 127/221 (57%), Positives = 157/221 (71%)

Query:     1 MPKSKRDKKVTLSKTVKKGLERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDW 60
             MPKSKRDKKV+L+KT KKGLE KQNL +EL K V+ Y  +F+FSV NMRNSKLKD+RN W
Sbjct:     1 MPKSKRDKKVSLTKTAKKGLELKQNLIEELRKCVDTYKYLFIFSVANMRNSKLKDIRNAW 60

Query:    61 KDSRFFFGKNKVMAYALGKSQEDEIEKNIHVVSSALKGQCGLLFTNRSKDDVLMWFDVYE 120
             K SR FFGKNKVM  ALG+S  DE + N+H VS  L+G+ GLLFTNR+K++V  WF  Y 
Sbjct:    61 KHSRMFFGKNKVMMVALGRSPSDEYKDNLHQVSKKLRGEVGLLFTNRTKEEVDEWFTKYT 120

Query:   121 DEDFAKSGFISTEDVELKEGPLPEFPHSIEPQLRQLGLQTNLNKGVVTLFKDHTVCKKGD 180
             + D+A++G  +T  V L  GPL +FPHS+EPQLRQLGL T L KGVVTL  D+ VCK+GD
Sbjct:   121 EMDYARAGNKATFTVNLDPGPLEQFPHSMEPQLRQLGLPTALKKGVVTLLSDYEVCKEGD 180

Query:   181 VLTPEQARIXXXXXXXXXXXXXXX-YLWYNKKEGTFENLLD 220
             VLTPEQAR+                Y+W + + G F+ + D
Sbjct:   181 VLTPEQARVLKLFGYEMAEFKVSIKYMW-DAQSGRFQQMGD 220

GO:0005730 "nucleolus" evidence=IEA

GO:0031965 "nuclear membrane" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

UNIPROTKB|Q9UKD2 MRTO4 "mRNA turnover protein 4 homolog" [Homo sapiens (taxid:9606)]

 Score = 632 (227.5 bits), Expect = 7.9e-62, P = 7.9e-62
 Identities = 125/221 (56%), Positives = 156/221 (70%)

Query:     1 MPKSKRDKKVTLSKTVKKGLERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDW 60
             MPKSKRDKKV+L+KT KKGLE KQNL +EL K V+ Y  +F+FSV NMRNSKLKD+RN W
Sbjct:     1 MPKSKRDKKVSLTKTAKKGLELKQNLIEELRKCVDTYKYLFIFSVANMRNSKLKDIRNAW 60

Query:    61 KDSRFFFGKNKVMAYALGKSQEDEIEKNIHVVSSALKGQCGLLFTNRSKDDVLMWFDVYE 120
             K SR FFGKNKVM  ALG+S  DE + N+H VS  L+G+ GLLFTNR+K++V  WF  Y 
Sbjct:    61 KHSRMFFGKNKVMMVALGRSPSDEYKDNLHQVSKRLRGEVGLLFTNRTKEEVNEWFTKYT 120

Query:   121 DEDFAKSGFISTEDVELKEGPLPEFPHSIEPQLRQLGLQTNLNKGVVTLFKDHTVCKKGD 180
             + D+A++G  +   V L  GPL +FPHS+EPQLRQLGL T L +GVVTL  D+ VCK+GD
Sbjct:   121 EMDYARAGNKAAFTVSLDPGPLEQFPHSMEPQLRQLGLPTALKRGVVTLLSDYEVCKEGD 180

Query:   181 VLTPEQARIXXXXXXXXXXXXXXX-YLWYNKKEGTFENLLD 220
             VLTPEQAR+                Y+W + + G F+ + D
Sbjct:   181 VLTPEQARVLKLFGYEMAEFKVTIKYMW-DSQSGRFQQMGD 220

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0031965 "nuclear membrane" evidence=IDA

UNIPROTKB|F1SUQ2 MRTO4 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 631 (227.2 bits), Expect = 1.0e-61, P = 1.0e-61
 Identities = 127/221 (57%), Positives = 156/221 (70%)

Query:     1 MPKSKRDKKVTLSKTVKKGLERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDW 60
             MPKSKRDKKV+L+KT KKGLE KQNL +EL K V+ Y  +F+FSV NMRNSKLKD+RN W
Sbjct:     1 MPKSKRDKKVSLTKTAKKGLELKQNLIEELRKCVDTYKFLFIFSVANMRNSKLKDIRNAW 60

Query:    61 KDSRFFFGKNKVMAYALGKSQEDEIEKNIHVVSSALKGQCGLLFTNRSKDDVLMWFDVYE 120
             K SR FFGKNKVM  ALG+S  +E   N+H VS  L+G+ GLLFTNR+K++V  WF  Y 
Sbjct:    61 KHSRMFFGKNKVMMVALGRSPCEEYRDNLHQVSKKLRGEVGLLFTNRTKEEVNEWFTKYG 120

Query:   121 DEDFAKSGFISTEDVELKEGPLPEFPHSIEPQLRQLGLQTNLNKGVVTLFKDHTVCKKGD 180
             + D+A++G  +T  V L  GPL +FPHS+EPQLRQLGL T L KGVVTL  D+ VCK+GD
Sbjct:   121 EMDYARAGNKATFTVNLDPGPLEQFPHSMEPQLRQLGLPTTLKKGVVTLLSDYEVCKEGD 180

Query:   181 VLTPEQARIXXXXXXXXXXXXXXX-YLWYNKKEGTFENLLD 220
             VLTPEQARI                Y+W + + G F+ + D
Sbjct:   181 VLTPEQARILKLFGYEMAEFKVTIRYMW-DAQSGRFQEMGD 220

GO:0031965 "nuclear membrane" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

ZFIN|ZDB-GENE-050417-142 mrto4 "mRNA turnover 4 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 620 (223.3 bits), Expect = 1.5e-60, P = 1.5e-60
 Identities = 121/220 (55%), Positives = 154/220 (70%)

Query:     1 MPKSKRDKKVTLSKTVKKGLERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDW 60
             MPKSKRDKK++L+KT KKGLE KQNL +EL K  + Y  +FVFSV+NMRN+KLKD+R  W
Sbjct:     1 MPKSKRDKKISLTKTTKKGLEAKQNLIEELRKCADIYRYVFVFSVENMRNNKLKDIRTAW 60

Query:    61 KDSRFFFGKNKVMAYALGKSQEDEIEKNIHVVSSALKGQCGLLFTNRSKDDVLMWFDVYE 120
             + SRFFFGKNKVM  ALGK   DE + N+H +S  L+G+ G+LFTN++KD+V  +F  ++
Sbjct:    61 RHSRFFFGKNKVMMIALGKGPTDEYKDNLHKLSRFLRGEVGVLFTNKTKDEVQEYFGNFK 120

Query:   121 DEDFAKSGFISTEDVELKEGPLPEFPHSIEPQLRQLGLQTNLNKGVVTLFKDHTVCKKGD 180
             + D+A++G  ++  V L EGPL +FPHS+EPQLRQLGL T L KG VTL KD  VCK+GD
Sbjct:   121 EVDYARAGNTASMAVTLDEGPLDQFPHSMEPQLRQLGLPTALKKGAVTLIKDFEVCKEGD 180

Query:   181 VLTPEQARIXXXXXXXXXXXXXXXYLWYNKKEGTFENLLD 220
              LTPEQARI                  +N + G FE L D
Sbjct:   181 TLTPEQARILKLFGFEMAEFKLSIKCMWNSESGEFEKLTD 220

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

UNIPROTKB|F1P353 MRTO4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 617 (222.3 bits), Expect = 3.1e-60, P = 3.1e-60
 Identities = 123/228 (53%), Positives = 158/228 (69%)

Query:     1 MPKSKRDKKVTLSKTVKKGLERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDW 60
             MPKSKRD+KV+L++T +KGLE KQ L  EL + V+ Y +IF+FSV NMRN+KLKDVRN W
Sbjct:     8 MPKSKRDRKVSLTRTPRKGLEAKQALIAELRRCVDTYKHIFIFSVANMRNNKLKDVRNAW 67

Query:    61 KDSRFFFGKNKVMAYALGKSQEDEIEKNIHVVSSALKGQCGLLFTNRSKDDVLMWFDVYE 120
             K SR FFGKNKVM  ALG+    E  +N+H VS  L+G+ GLLFTNR+K++V  WF  ++
Sbjct:    68 KHSRIFFGKNKVMMVALGREPSSEYRENLHQVSKHLRGEVGLLFTNRTKEEVDEWFSSFK 127

Query:   121 DEDFAKSGFISTEDVELKEGPLPEFPHSIEPQLRQLGLQTNLNKGVVTLFKDHTVCKKGD 180
             + DFA++G  +T  V L  GPL +FPHS+EPQLRQLGL T L KGVVTL  D+ VCK+GD
Sbjct:   128 EVDFARAGNKATYTVSLDTGPLEQFPHSMEPQLRQLGLPTALKKGVVTLLSDYEVCKEGD 187

Query:   181 VLTPEQARIXXXXXXXXXXXXXXX-YLWYNKKEGTFENLLDREKTPMD 227
             +LTPEQAR+                +LW N + G F+ L+  E+   D
Sbjct:   188 ILTPEQARVLKLFGYEMAEFKVTIKFLW-NSETGDFQKLVGDEEDEED 234

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0031965 "nuclear membrane" evidence=IEA

UNIPROTKB|E2QYG0 E2QYG0 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 564 (203.6 bits), Expect = 1.3e-54, P = 1.3e-54
 Identities = 111/182 (60%), Positives = 134/182 (73%)

Query:     1 MPKSKRDKKVTLSKTVKKGLERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDW 60
             MP SK DKKV+L+KT KKGLE KQNL +EL K V+ Y  +F+FSV NMRNS+LKD+RN W
Sbjct:     1 MPTSKHDKKVSLTKTAKKGLELKQNLIEELRKCVDTYKYLFIFSVANMRNSELKDIRNPW 60

Query:    61 KDSRFFFGKNKVMAYALGKSQEDEIEKNIHVVSSALKGQCGLLFTNRSKDDVLMWFDVYE 120
             K SR FFGKNKVM  ALG+S  DE + N+H VS  LKG+ GLLFTNR+K++   WF  Y 
Sbjct:    61 KHSRVFFGKNKVMMVALGRSPADEYKDNLHQVSKKLKGEVGLLFTNRTKEEANEWFTKYT 120

Query:   121 DEDFAKSGFISTEDVELKEGPLPEFPHSIEPQLRQLGLQTNLNKGVVTLFKDHTVCKKGD 180
             + DFA +G  +T  V L  GPL +FPHS+EPQLRQLGL T L +GVVTL  DH VCK+ +
Sbjct:   121 EMDFAPAGNRATFTVTLHPGPLEQFPHSMEPQLRQLGLPTALKRGVVTLPSDHQVCKRAE 180

Query:   181 VL 182
              L
Sbjct:   181 PL 182

GO:0005840 "ribosome" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

FB|FBgn0033485 RpLP0-like "Ribosomal protein LP0-like" [Drosophila melanogaster (taxid:7227)]

 Score = 561 (202.5 bits), Expect = 2.6e-54, P = 2.6e-54
 Identities = 109/190 (57%), Positives = 144/190 (75%)

Query:     1 MPKSKRDKKVTLSKTVKKGLERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDW 60
             MP+SKRDKKV+L+KT +KGL  KQ + D++   V KY NIFVF VQNMRNS LKD+R + 
Sbjct:     1 MPRSKRDKKVSLTKTDRKGLAWKQRIVDDIRFCVGKYPNIFVFQVQNMRNSLLKDLRQEL 60

Query:    61 K-DSRFFFGKNKVMAYALGKSQEDEIEKNIHVVSSALKGQCGLLFTNRSKDDVLMWFDVY 119
             K +SRF FGKN+VM   LG+++ +E+E  +H +S  L GQ GLLFT++SK++VL W + Y
Sbjct:    61 KKNSRFIFGKNRVMQIGLGRTKSEEVEPELHKLSKRLTGQVGLLFTDKSKEEVLEWAENY 120

Query:   120 EDEDFAKSGFISTEDVELKEGPLPEFPHSIEPQLRQLGLQTNLNKGVVTLFKDHTVCKKG 179
                ++A+SGF++TE V L  GPL +F HS+EP LR LGL T L KG+VTL+ D+TVC++G
Sbjct:   121 WAVEYARSGFVATETVTLPAGPLEDFAHSMEPHLRSLGLPTKLEKGIVTLYSDYTVCEEG 180

Query:   180 DVLTPEQARI 189
              VLTPEQARI
Sbjct:   181 KVLTPEQARI 190

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0006412 "translation" evidence=IC

GO:0003735 "structural constituent of ribosome" evidence=IC

GO:0022625 "cytosolic large ribosomal subunit" evidence=ISS

UNIPROTKB|F1M970 F1M970 "Uncharacterized protein" [Rattus norvegicus (taxid:10116)]

 Score = 554 (200.1 bits), Expect = 1.5e-53, P = 1.5e-53
 Identities = 115/216 (53%), Positives = 142/216 (65%)

Query:     3 KSKRDKKVTLSKTVKKGLERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDWKD 62
             K KRDKKV+L+KT KKGLE KQNL  EL K V+ Y  +F+FS+ NMRNSKLKD+RN WK 
Sbjct:     3 KCKRDKKVSLTKTAKKGLELKQNLI-ELWKCVDTYKYLFIFSMANMRNSKLKDIRNAWKH 61

Query:    63 SRFFFGKNKVMAYALGKSQEDEIEKNIHVVSSALKGQCGLLFTNRSKDDVLMWFDVYEDE 122
             SR FFG NKV+  ALG+S  DE + N+H V   L+G+ GLLFTNR K++V  WF  Y + 
Sbjct:    62 SRKFFG-NKVIMVALGRSPSDEYKDNLHQVHKKLRGEVGLLFTNRRKEEVNEWFTKYTEM 120

Query:   123 DFAKSGFISTEDVELKEGPLPEFPHSIEPQLRQLGLQTNLNKGVVTLFKDHTVCKKGDVL 182
             DFA+ G      V    GPL +FPHS+EPQLRQLGL T L  GVVTL  D+ VCK+GDVL
Sbjct:   121 DFARGG----NKVSPDPGPLKQFPHSMEPQLRQLGLPTALKNGVVTLLSDYEVCKEGDVL 176

Query:   183 TPEQARIXXXXXXXXXXXXXXXYLWYNKKEGTFENL 218
             TPEQAR+                  ++ + G F+ +
Sbjct:   177 TPEQARVLKLFGYEMAESRVTIKFMWDAQSGRFQQM 212

GO:0005840 "ribosome" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9USZ6	MRT4_SCHPO	No assigned EC number	0.4086	0.8971	0.9045	yes	N/A
P33201	MRT4_YEAST	No assigned EC number	0.3173	0.8930	0.9194	yes	N/A
Q86HD3	MRT4_DICDI	No assigned EC number	0.4345	0.8806	0.9596	yes	N/A
Q9UKD2	MRT4_HUMAN	No assigned EC number	0.5954	0.9053	0.9205	yes	N/A
Q9D0I8	MRT4_MOUSE	No assigned EC number	0.6136	0.9053	0.9205	yes	N/A
Q75DK9	MRT4_ASHGO	No assigned EC number	0.3246	0.8971	0.9237	yes	N/A
Q6FJ04	MRT4_CANGA	No assigned EC number	0.3463	0.8971	0.9121	yes	N/A
A4FV84	MRT4_BOVIN	No assigned EC number	0.6045	0.9053	0.9205	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	243
cd05796	163	cd05796, Ribosomal_P0_like, Ribosomal protein L10	5e-86
cd00379	155	cd00379, Ribosomal_L10_P0, Ribosomal protein L10 f	3e-26
cd05795	175	cd05795, Ribosomal_P0_L10e, Ribosomal protein L10	1e-21
PRK04019	330	PRK04019, rplP0, acidic ribosomal protein P0; Vali	1e-20
pfam00466	100	pfam00466, Ribosomal_L10, Ribosomal protein L10	5e-16
PTZ00135	310	PTZ00135, PTZ00135, 60S acidic ribosomal protein P	8e-14
COG0244	175	COG0244, RplJ, Ribosomal protein L10 [Translation,	4e-08
PTZ00240	323	PTZ00240, PTZ00240, 60S ribosomal protein P0; Prov	1e-06

>gnl|CDD|240222 cd05796, Ribosomal_P0_like, Ribosomal protein L10 family, P0-like protein subfamily; composed of uncharacterized eukaryotic proteins with similarity to the 60S ribosomal protein P0, including the Saccharomyces cerevisiae protein called mRNA turnover protein 4 (MRT4)

 Score =  252 bits (646), Expect = 5e-86
 Identities = 98/163 (60%), Positives = 126/163 (77%)

Query: 21  ERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDWKDSRFFFGKNKVMAYALGKS 80
           E KQ L + + +AV+KY  I+VFSV NMRN+KLKD+R +WKDSRFFFGKNKVM  ALG++
Sbjct: 1   ELKQKLVENIREAVDKYKYIYVFSVDNMRNNKLKDIRQEWKDSRFFFGKNKVMQVALGRT 60

Query: 81  QEDEIEKNIHVVSSALKGQCGLLFTNRSKDDVLMWFDVYEDEDFAKSGFISTEDVELKEG 140
            EDE + N+H +S  LKGQ GLLFTN   ++V+ +FD Y + DFA++G I+TE V L EG
Sbjct: 61  PEDEYKPNLHKLSKYLKGQVGLLFTNEPPEEVIEYFDSYSEPDFARAGSIATETVTLPEG 120

Query: 141 PLPEFPHSIEPQLRQLGLQTNLNKGVVTLFKDHTVCKKGDVLT 183
           PL +FPHS+EPQLR+LGL T L KGV+TL  D+ VC++G VLT
Sbjct: 121 PLEQFPHSMEPQLRKLGLPTKLKKGVITLEADYVVCEEGKVLT 163

MRT4 may be involved in mRNA decay. P0 forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. It occupies the L7/L12 stalk of the ribosome. The stalk is known to contain the binding site for elongation factors EF-G and EF-Tu; however, there is disagreement as to whether or not P0 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, P0 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-interacting protein (WIP). Some eukaryotic P0 sequences have an additional C-terminal domain homologous with acidic proteins P1 and P2. Length = 163

>gnl|CDD|238222 cd00379, Ribosomal_L10_P0, Ribosomal protein L10 family; composed of the large subunit ribosomal protein called L10 in bacteria, P0 in eukaryotes, and L10e in archaea, as well as uncharacterized P0-like eukaryotic proteins

 Score = 99.2 bits (248), Expect = 3e-26
 Identities = 38/166 (22%), Positives = 71/166 (42%), Gaps = 18/166 (10%)

Query: 21  ERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDWKDS--RFFFGKNKVMAYALG 78
           E+K+ L +EL + ++KY ++ V   + +  ++L ++R + ++S  +   GKN +M  AL 
Sbjct: 1   EKKEELVEELKELLKKYKSVVVVDYRGLTVAQLTELRKELRESGAKLKVGKNTLMRRALK 60

Query: 79  KSQEDEIEKNIHVVSSALKGQCGLLFTNRSKDDVLMWFDVYE---DEDFAKSGFISTEDV 135
            +  +E++         LKG   L FTN    +V      +     + FAK G ++   V
Sbjct: 61  GTGFEELKP-------LLKGPTALAFTNEDPVEVAKVLKDFAKENKKLFAKGGVVA-GKV 112

Query: 136 ELKEGPLPEFPHSIEP-QLRQLGLQTNLNKGVVT-LFKDHTVCKKG 179
               G       +  P +   L +   L K  +  L +       G
Sbjct: 113 LDPAGV---TALAKLPSREELLAMLIGLLKAPIAKLARLLNALGIG 155

In all three kingdoms, L10 forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. The N-terminal domain (NTD) of L10 interacts with L11 protein and forms the base of the L7/L12 stalk, while the extended C-terminal helix binds to two or three dimers of the NTD of L7/L12 (L7 and L12 are identical except for an acetylated N-terminus). The L7/L12 stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-interacting protein (WIP). Some eukaryotic P0 sequences have an additional C-terminal domain homologous with acidic proteins P1 and P2. Length = 155

>gnl|CDD|240221 cd05795, Ribosomal_P0_L10e, Ribosomal protein L10 family, P0 and L10e subfamily; composed of eukaryotic 60S ribosomal protein P0 and the archaeal P0 homolog, L10e

 Score = 87.6 bits (218), Expect = 1e-21
 Identities = 42/175 (24%), Positives = 78/175 (44%), Gaps = 4/175 (2%)

Query: 21  ERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDWKD-SRFFFGKNKVMAYALGK 79
           E K+   ++L + ++ Y  + +    N+ + +L+ +R   +  +    GKN ++  AL  
Sbjct: 1   EWKKEYVEKLTELLKSYPKVLIVDADNVGSKQLQKIRRSLRGKAEILMGKNTLIRRALRN 60

Query: 80  SQEDEIEKNIHVVSSALKGQCGLLFTNRSKDDVLMWFDVYEDEDFAKSGFISTEDVELKE 139
             ++  E     +   LKG  G +FTN    ++    +  +    AK G I+  DV +  
Sbjct: 61  LGDENPELEK--LLPYLKGNVGFIFTNGDPFEIRKILEENKVPAPAKPGAIAPCDVVVPA 118

Query: 140 GPLPEFPHSIEPQLRQLGLQTNLNKGVVTLFKDHTVCKKGDVLTPEQARILKLLK 194
           GP    P       + LG+ T + KG + +  D  V KKG+ +   +A +L  L 
Sbjct: 119 GPTGMPPGPT-SFFQALGIPTKIEKGKIEIISDVVVVKKGEKVGASEATLLNKLN 172

P0 or L10e forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. The stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-interacting protein (WIP). These eukaryotic and archaeal P0 sequences have an additional C-terminal domain homologous with acidic proteins P1 and P2. Length = 175

>gnl|CDD|179712 PRK04019, rplP0, acidic ribosomal protein P0; Validated

 Score = 88.4 bits (220), Expect = 1e-20
 Identities = 47/174 (27%), Positives = 91/174 (52%), Gaps = 5/174 (2%)

Query: 21  ERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRND-WKDSRFFFGKNKVMAYALGK 79
           E K+   +EL + ++ Y  + +  ++ +   +L+++R      +     KN ++  AL +
Sbjct: 6   EWKKEEVEELKELIKSYPVVGIVDLEGIPARQLQEIRRKLRGKAELKVSKNTLIKRALEE 65

Query: 80  SQEDEIEKNIHVVSSALKGQCGLLFTNRSKDDVLMWFDVYEDEDFAKSGFISTEDVELKE 139
           + E+++EK    +   L+GQ  L+FTN +   +    +  +    AK G I+ ED+ +  
Sbjct: 66  AGEEDLEK----LEDYLEGQVALIFTNMNPFKLYKLLEKSKTPAPAKPGDIAPEDIVVPA 121

Query: 140 GPLPEFPHSIEPQLRQLGLQTNLNKGVVTLFKDHTVCKKGDVLTPEQARILKLL 193
           GP    P  I  +L++LG+   + KG + + KD  V K G+V++PE A +L+ L
Sbjct: 122 GPTGFPPGPILSELQKLGIPARIQKGKIVIKKDTVVAKAGEVISPELANVLQKL 175

Length = 330

>gnl|CDD|215933 pfam00466, Ribosomal_L10, Ribosomal protein L10

 Score = 70.6 bits (174), Expect = 5e-16
 Identities = 28/111 (25%), Positives = 51/111 (45%), Gaps = 13/111 (11%)

Query: 18  KGLERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDWK--DSRFFFGKNKVMAY 75
              E+K+ +  EL + +++Y ++ V   + +  ++L ++R   +   +    GKN +M  
Sbjct: 1   MTREKKEEIVAELKELLKEYKSVVVVDYRGLTVAQLTELRKKLREAGAELKVGKNTLMRR 60

Query: 76  ALGKSQEDEIEKNIHVVSSALKGQCGLLFTNRSKDDVLMWFDVYEDEDFAK 126
           AL  + E+E       +S  LKG   L+FTN     V         + FAK
Sbjct: 61  ALEGTGEEE------ALSELLKGPTALIFTNEDPVAVAKVL-----KKFAK 100

Length = 100

>gnl|CDD|240285 PTZ00135, PTZ00135, 60S acidic ribosomal protein P0; Provisional

 Score = 69.3 bits (170), Expect = 8e-14
 Identities = 48/187 (25%), Positives = 91/187 (48%), Gaps = 8/187 (4%)

Query: 12  LSKTVKKGLERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDWK-DSRFFFGKN 70
           ++K  KK   +K+   ++L + +EKY  I + SV N+ + +++D+R   +  +    GKN
Sbjct: 1   MAKPEKK--AKKKAYFEKLYELLEKYKKILIVSVDNVGSKQMQDIRRSLRGKAELLMGKN 58

Query: 71  KVMAYALGKSQEDEIEKNIHVVSSALKGQCGLLFTNRSKDDVLMWFDVYEDEDFAKSGFI 130
            ++  AL K + +E+ + +  +   +KG  G +FT     +V       +    A++G I
Sbjct: 59  TLIRKAL-KQRLEELPE-LEKLLPHVKGNVGFVFTKDDLFEVKPVILENKVPAPARAGVI 116

Query: 131 STEDVELKEGPLPEFPHSIEPQLRQ-LGLQTNLNKGVVTLFKDHTVCKKGDVLTPEQARI 189
           +  DV +  GP    P        Q LG+ T + KG + +  +  + K+G  +   QA +
Sbjct: 117 APIDVVIPAGPTGMDPSQT--SFFQALGIATKIVKGQIEITNEVHLIKEGQKVGASQAVL 174

Query: 190 LKLLKKK 196
           L+ L  K
Sbjct: 175 LQKLNIK 181

Length = 310

>gnl|CDD|223322 COG0244, RplJ, Ribosomal protein L10 [Translation, ribosomal structure and biogenesis]

 Score = 51.5 bits (124), Expect = 4e-08
 Identities = 16/89 (17%), Positives = 43/89 (48%), Gaps = 9/89 (10%)

Query: 20  LERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDWKD--SRFFFGKNKVMAYAL 77
            E K+ L  EL + +++  ++ +   + +  ++L ++R   ++  ++    KN ++  AL
Sbjct: 5   REWKKELVAELKELIKESPSVVIVDYRGLTVAQLTELRKKLREAGAKLKVVKNTLLRRAL 64

Query: 78  GKSQEDEIEKNIHVVSSALKGQCGLLFTN 106
            ++  + ++         LKG   + F+N
Sbjct: 65  EEAGLEGLDD-------LLKGPTAIAFSN 86

Length = 175

>gnl|CDD|140267 PTZ00240, PTZ00240, 60S ribosomal protein P0; Provisional

 Score = 48.0 bits (114), Expect = 1e-06
 Identities = 45/191 (23%), Positives = 80/191 (41%), Gaps = 29/191 (15%)

Query: 21  ERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDWK-DSRFFFGKNKVMAYALGK 79
             K+   + LV  + KY+ +    + N+R+ ++ DVR   +  + F  GK  + A  + K
Sbjct: 6   TAKREYEERLVDCLTKYSCVLFVGMDNVRSQQVHDVRRALRGKAEFVMGKKTLQAKIVEK 65

Query: 80  SQEDE-------------IEKNIHVVSSALKGQCGLLFTNRSKDDVLMWFDVYEDEDFAK 126
             + +              EKN+      L G  GL+FTN    ++    D +  +  A+
Sbjct: 66  RAQAKKASAEAKLFNDQCEEKNL------LSGNTGLIFTNNEVQEITSVLDSHRVKAPAR 119

Query: 127 SGFISTEDVELKEGPLPEFPHSIEPQ----LRQLGLQTNLNKGVVTLFKDHTVCKKGDVL 182
            G I+  DV +  G        +EP      + L + T + KG+V +  +  V   GD +
Sbjct: 120 VGAIAPCDVIVPAGST-----GMEPTQTSFFQALNIATKIAKGMVEIVTEKKVLSVGDKV 174

Query: 183 TPEQARILKLL 193
               A +L+ L
Sbjct: 175 DNSTATLLQKL 185

Length = 323

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	243
KOG0816|consensus	223		100.0
PTZ00240	323	60S ribosomal protein P0; Provisional	100.0
PTZ00135	310	60S acidic ribosomal protein P0; Provisional	100.0
cd05795	175	Ribosomal_P0_L10e Ribosomal protein L10 family, P0	100.0
cd05796	163	Ribosomal_P0_like Ribosomal protein L10 family, P0	100.0
PRK04019	330	rplP0 acidic ribosomal protein P0; Validated	100.0
KOG0815|consensus	245		100.0
COG0244	175	RplJ Ribosomal protein L10 [Translation, ribosomal	99.97
cd00379	155	Ribosomal_L10_P0 Ribosomal protein L10 family; com	99.91
PF00466	100	Ribosomal_L10: Ribosomal protein L10; InterPro: IP	99.89
PRK00099	172	rplJ 50S ribosomal protein L10; Reviewed	99.87
cd05797	157	Ribosomal_L10 Ribosomal protein L10 family, L10 su	99.87
KOG4241|consensus	245		97.15
PRK04019	330	rplP0 acidic ribosomal protein P0; Validated	96.87
PF07697	222	7TMR-HDED: 7TM-HD extracellular; InterPro: IPR0116	82.03

>KOG0816|consensus

Probab=100.00  E-value=1e-69  Score=458.09  Aligned_cols=216  Identities=57%  Similarity=0.945  Sum_probs=214.4

Q ss_pred             CCCCcccceeeccccccCchHHHHHHHHHHHHHHhhCCeEEEEEeCCCCcHHHHHHHHhhCCceEEEEehHHHHHHhhcc
Q psy15723          1 MPKSKRDKKVTLSKTVKKGLERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDWKDSRFFFGKNKVMAYALGKS   80 (243)
Q Consensus         1 mp~skr~~~v~ltk~~Kk~~e~K~~~v~~l~e~l~~y~~v~v~~~~~l~~~ql~~lR~~lr~s~~~vgKNtLmk~AL~~~   80 (243)
                      ||||||+|.|+||+|.||++|+|++++++|++++++|+++|||++.|||+..+++||.+|++|+|+||||++|.+|||.+
T Consensus         1 MprSkRdk~vtL~kt~KKg~e~K~~i~~~ir~~vd~Y~~v~Vf~~~nMRn~~lk~iR~~~k~sr~f~GknKVm~vaLG~~   80 (223)
T KOG0816|consen    1 MPRSKRDKKVTLTKTAKKGKEKKEAIVEEIREAVDKYPYVFVFEVPNMRNTTLKEIRQDFKNSRFFFGKNKVMQVALGRS   80 (223)
T ss_pred             CCccccccccchhHhhhhhHHHHHHHHHHHHHHHhhCCeEEEEEcCCcchHHHHHHHHHhhccceecchhhHHHHHhcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhhhhchhhhhhhccCceEEEEecCCHHHHHHHHhhcCcccccccCCCccceEEEcCCCCCCCCCCChhHhhhcCcee
Q psy15723         81 QEDEIEKNIHVVSSALKGQCGLLFTNRSKDDVLMWFDVYEDEDFAKSGFISTEDVELKEGPLPEFPHSIEPQLRQLGLQT  160 (243)
Q Consensus        81 ~e~e~~~~l~~L~~~L~G~~allFTn~dp~~v~k~l~~~~~~~~Ak~G~iA~~dvvI~~G~t~~~p~~~~~~~~kLgipt  160 (243)
                      .++||++++++++.+|+|.+||+|||.++.+|.++|.+|...+|||+|++||++|+||+||+.+++|+|+|+||+|||||
T Consensus        81 ~~dE~~~~l~klskll~G~~GLlFTd~~keeV~e~f~sy~~~DyaR~g~vA~~Tv~ip~Gpl~~f~hsmEP~lRklglPt  160 (223)
T KOG0816|consen   81 REDEYKENLYKLSKLLKGSVGLLFTDMSKEEVIEWFRSYVEEDYARAGDVAPETVTIPEGPLEQFAHSMEPQLRKLGLPT  160 (223)
T ss_pred             chhhHHHHHHHhhhhccCceEEEecCCCHHHHHHHHHHHHHHhhhccCCcCcceEeecCcchhhcccccchhhHhhcCce
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eecCceEEEccCeeEeecCcccCHHHHHHHHHcCcCceeeEEEEEEEEeCCCceEE
Q psy15723        161 NLNKGVVTLFKDHTVCKKGDVLTPEQARILKLLKKKMAKFKVLLYLWYNKKEGTFE  216 (243)
Q Consensus       161 ki~kG~I~i~~d~~v~k~Ge~vs~~qA~lL~~lgikp~~~~l~l~~~~~~~~g~~~  216 (243)
                      ++++|+|+|.+||+||++|++++++||+||++||+++++|++.+.++|++.+|.++
T Consensus       161 ~lk~G~vtL~sdy~VCeEG~~Ld~rqA~ILKlfg~kma~Fkl~~~~~w~~s~~~~~  216 (223)
T KOG0816|consen  161 KLKKGVVTLLSDYTVCEEGDVLDPRQAKILKLFGKKMAKFKLAVKAYWSKSSGQKE  216 (223)
T ss_pred             eecCCeEEEecCceeecCCcccCHHHHHHHHHHhHhhHhheEEEEEEEcCccceee
Confidence            99999999999999999999999999999999999999999999999999888776

>PTZ00240 60S ribosomal protein P0; Provisional

Probab=100.00  E-value=5.2e-61  Score=437.86  Aligned_cols=205  Identities=22%  Similarity=0.338  Sum_probs=190.4

Q ss_pred             chHHHHHHHHHHHHHHhhCCeEEEEEeCCCCcHHHHHHHHhhCC-ceEEEEehHHHHHHhhccchhhhhhchhhh-----
Q psy15723         19 GLERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDWKD-SRFFFGKNKVMAYALGKSQEDEIEKNIHVV-----   92 (243)
Q Consensus        19 ~~e~K~~~v~~l~e~l~~y~~v~v~~~~~l~~~ql~~lR~~lr~-s~~~vgKNtLmk~AL~~~~e~e~~~~l~~L-----   92 (243)
                      .++||.+++++|++++++|++||||+++|++++|||+||+.||| ++|+|||||||++||+++.++++.+++++|     
T Consensus         4 ~~~~K~~~v~~l~~~l~~y~~v~Iv~~~nv~s~qlq~IR~~lrg~a~~~~GKNtlm~~AL~~~~~~~~~~~~~~ll~~~~   83 (323)
T PTZ00240          4 ITTAKREYEERLVDCLTKYSCVLFVGMDNVRSQQVHDVRRALRGKAEFVMGKKTLQAKIVEKRAQAKKASAEAKLFNDQC   83 (323)
T ss_pred             hhHHHHHHHHHHHHHHHhCCEEEEEEecCCCcHHHHHHHHHhhCCcEEEEecHHHHHHHHhhccccccchhHHHHhhhhc
Confidence            36789999999999999999999999999999999999999995 899999999999999999876655556666     


Q ss_pred             --hhhccCceEEEEecCCHHHHHHHHhhcCcccccccCCCccceEEEcCCCCCCCCCCChhHhhhcCceeeecCceEEEc
Q psy15723         93 --SSALKGQCGLLFTNRSKDDVLMWFDVYEDEDFAKSGFISTEDVELKEGPLPEFPHSIEPQLRQLGLQTNLNKGVVTLF  170 (243)
Q Consensus        93 --~~~L~G~~allFTn~dp~~v~k~l~~~~~~~~Ak~G~iA~~dvvI~~G~t~~~p~~~~~~~~kLgiptki~kG~I~i~  170 (243)
                        +++|+||+||+|||.||+++.++|++|++++|||+|++||+||+||+|||++.|+ ++++||+|||||+|++|+|+|.
T Consensus        84 ~~~~~l~GnvgliFTn~~p~ev~~~l~~~k~~a~AraG~IAp~dVvvpaG~T~~~P~-~~s~fq~LGIpTkI~kGkIeI~  162 (323)
T PTZ00240         84 EEKNLLSGNTGLIFTNNEVQEITSVLDSHRVKAPARVGAIAPCDVIVPAGSTGMEPT-QTSFFQALNIATKIAKGMVEIV  162 (323)
T ss_pred             cccccccCCEEEEEeCCCHHHHHHHHHHcCCcccccCCCCCCceEEECCCCCCCCCc-chHHHHHcCCCeEecCcEEEEe
Confidence              4999999999999999999999999999999999999999999999999997776 7999999999999999999999


Q ss_pred             cCeeEeecCcccCHHHHHHHHHcCcCceeeEEEEEEEEeCCCceEEE---ccCCcCCcc
Q psy15723        171 KDHTVCKKGDVLTPEQARILKLLKKKMAKFKVLLYLWYNKKEGTFEN---LLDREKTPM  226 (243)
Q Consensus       171 ~d~~v~k~Ge~vs~~qA~lL~~lgikp~~~~l~l~~~~~~~~g~~~~---~~~~~~~~~  226 (243)
                      +|++||++||+||++||+||++|||+|++|+|.++++||+  |.+|.   |+++++++.
T Consensus       163 ~d~~v~k~Ge~V~~~~A~LL~~L~IkP~~~gl~l~~vyd~--g~i~~~~vL~i~~e~~~  219 (323)
T PTZ00240        163 TEKKVLSVGDKVDNSTATLLQKLNISPFYYQVEVLSVWDR--GVLFTREDLSMTEDVVE  219 (323)
T ss_pred             cCeEEecCCCCcCHHHHHHHHHcCCCeEEEEEEEEEEEeC--CeecCHHHcCCCHHHHH
Confidence            9999999999999999999999999999999999999984  67886   555555443

>PTZ00135 60S acidic ribosomal protein P0; Provisional

Probab=100.00  E-value=1.2e-60  Score=435.18  Aligned_cols=205  Identities=22%  Similarity=0.355  Sum_probs=192.0

Q ss_pred             ccCchHHHHHHHHHHHHHHhhCCeEEEEEeCCCCcHHHHHHHHhhC-CceEEEEehHHHHHHhhccchhhhhhchhhhhh
Q psy15723         16 VKKGLERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDWK-DSRFFFGKNKVMAYALGKSQEDEIEKNIHVVSS   94 (243)
Q Consensus        16 ~Kk~~e~K~~~v~~l~e~l~~y~~v~v~~~~~l~~~ql~~lR~~lr-~s~~~vgKNtLmk~AL~~~~e~e~~~~l~~L~~   94 (243)
                      ++..|+||.+++++|++++++|++++|++|+||+++|+++||+.|| +++|+|||||||++||+++.++  .++++.|.+
T Consensus         3 ~~~~re~K~~~v~~l~e~l~~y~~v~vv~~~nv~s~ql~~iR~~LR~~a~~~vgKNTL~r~AL~~~~~~--~~~l~~L~~   80 (310)
T PTZ00135          3 KPEKKAKKKAYFEKLYELLEKYKKILIVSVDNVGSKQMQDIRRSLRGKAELLMGKNTLIRKALKQRLEE--LPELEKLLP   80 (310)
T ss_pred             cchhHHHHHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHhcCCEEEEEehHHHHHHHhhCccc--ccChHHHHh
Confidence            3456899999999999999999999999999999999999999999 5899999999999999998643  568999999


Q ss_pred             hccCceEEEEecCCHHHHHHHHhhcCcccccccCCCccceEEEcCCCCCCCCCCChhHhhhcCceeeecCceEEEccCee
Q psy15723         95 ALKGQCGLLFTNRSKDDVLMWFDVYEDEDFAKSGFISTEDVELKEGPLPEFPHSIEPQLRQLGLQTNLNKGVVTLFKDHT  174 (243)
Q Consensus        95 ~L~G~~allFTn~dp~~v~k~l~~~~~~~~Ak~G~iA~~dvvI~~G~t~~~p~~~~~~~~kLgiptki~kG~I~i~~d~~  174 (243)
                      +|+|++||+|||+||.+++++|.+|++++|||+|.+||+||+||+|||++.|+ ++++||+|||||+|++|+|+|.+|++
T Consensus        81 ~LkG~~gliFTn~dp~ev~k~l~~~k~~~~AKaG~iAp~dv~ip~G~t~~~P~-~~~~fq~LgipTkI~kG~I~I~~d~~  159 (310)
T PTZ00135         81 HVKGNVGFVFTKDDLFEVKPVILENKVPAPARAGVIAPIDVVIPAGPTGMDPS-QTSFFQALGIATKIVKGQIEITNEVH  159 (310)
T ss_pred             hccCCEEEEEECCCHHHHHHHHHHcCCccccccCCCCCceEEEcCCCCCCCcc-hhhHHHHcCCceEecCCeEEEecCeE
Confidence            99999999999999999999999999999999999999999999999987776 69999999999999999999999999


Q ss_pred             EeecCcccCHHHHHHHHHcCcCceeeEEEEEEEEeCCCceEEE---ccCCcCCc
Q psy15723        175 VCKKGDVLTPEQARILKLLKKKMAKFKVLLYLWYNKKEGTFEN---LLDREKTP  225 (243)
Q Consensus       175 v~k~Ge~vs~~qA~lL~~lgikp~~~~l~l~~~~~~~~g~~~~---~~~~~~~~  225 (243)
                      ||++||+||++||+||++|||+|++|+|.++++||+  |.+|.   |+++++++
T Consensus       160 v~k~Ge~v~~~~A~LL~~L~I~p~~~~l~~~~~yd~--g~~~~~~vL~i~~e~~  211 (310)
T PTZ00135        160 LIKEGQKVGASQAVLLQKLNIKPFSYGLEVLSIYDN--GSIYDAKVLDITDEDI  211 (310)
T ss_pred             EecCCCCcCHHHHHHHHHcCCCeEEEEEEEEEEEEC--CeEeCHHHcCCCHHHH
Confidence            999999999999999999999999999999999995  68987   55555544

>cd05795 Ribosomal_P0_L10e Ribosomal protein L10 family, P0 and L10e subfamily; composed of eukaryotic 60S ribosomal protein P0 and the archaeal P0 homolog, L10e

Probab=100.00  E-value=8e-58  Score=386.58  Aligned_cols=174  Identities=24%  Similarity=0.423  Sum_probs=167.1

Q ss_pred             HHHHHHHHHHHHHHhhCCeEEEEEeCCCCcHHHHHHHHhhC-CceEEEEehHHHHHHhhccchhhhhhchhhhhhhccCc
Q psy15723         21 ERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDWK-DSRFFFGKNKVMAYALGKSQEDEIEKNIHVVSSALKGQ   99 (243)
Q Consensus        21 e~K~~~v~~l~e~l~~y~~v~v~~~~~l~~~ql~~lR~~lr-~s~~~vgKNtLmk~AL~~~~e~e~~~~l~~L~~~L~G~   99 (243)
                      +||.++|++|++++++|++++|++|+|++++|+++||+.|| +++|+|||||||++||++++  ++.++++.|+++|+|+
T Consensus         1 ~~K~~~v~el~e~l~~~~~v~v~~~~gl~~~ql~~lR~~lr~~~~~~v~KNtL~~~Al~~~~--~~~~~~~~L~~~l~G~   78 (175)
T cd05795           1 EWKKEYVEKLTELLKSYPKVLIVDADNVGSKQLQKIRRSLRGKAEILMGKNTLIRRALRNLG--DENPELEKLLPYLKGN   78 (175)
T ss_pred             ChHHHHHHHHHHHHHhCCEEEEEEecCCChHHHHHHHHHhhCCCEEEEechHHHHHHHHhcc--cccccHHHHHHHhcCC
Confidence            68999999999999999999999999999999999999999 58999999999999999986  4567899999999999


Q ss_pred             eEEEEecCCHHHHHHHHhhcCcccccccCCCccceEEEcCCCCCCCCCCChhHhhhcCceeeecCceEEEccCeeEeecC
Q psy15723        100 CGLLFTNRSKDDVLMWFDVYEDEDFAKSGFISTEDVELKEGPLPEFPHSIEPQLRQLGLQTNLNKGVVTLFKDHTVCKKG  179 (243)
Q Consensus       100 ~allFTn~dp~~v~k~l~~~~~~~~Ak~G~iA~~dvvI~~G~t~~~p~~~~~~~~kLgiptki~kG~I~i~~d~~v~k~G  179 (243)
                      +||+||++||++++++|++|+.++|||+|++||+||+||+|||+ +||+++++||+|||||+|++|+|+|.+||+||++|
T Consensus        79 ~~liFt~~dp~~v~k~l~~~~~~~~ar~G~iA~~dvvi~~G~t~-~~p~~~~~~~~lgiptki~~G~i~i~~d~~v~k~G  157 (175)
T cd05795          79 VGFIFTNGDPFEIRKILEENKVPAPAKPGAIAPCDVVVPAGPTG-MPPGPTSFFQALGIPTKIEKGKIEIISDVVVVKKG  157 (175)
T ss_pred             EEEEEECCCHHHHHHHHHHcCCcccccCCCccCceEEEcCCCcC-CCCCchHHHHHcCCceEEecCEEEEecCeEEecCC
Confidence            99999999999999999999999999999999999999999999 45566889999999999999999999999999999


Q ss_pred             cccCHHHHHHHHHcCcCc
Q psy15723        180 DVLTPEQARILKLLKKKM  197 (243)
Q Consensus       180 e~vs~~qA~lL~~lgikp  197 (243)
                      |+||++||+||++|||+|
T Consensus       158 ~~v~~~~A~lL~~l~i~P  175 (175)
T cd05795         158 EKVGASEATLLNKLNIKP  175 (175)
T ss_pred             CCcCHHHHHHHHHcCCCC
Confidence            999999999999999998

P0 or L10e forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. The stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-interacting protein (WIP). These eukaryotic and archaeal P0 sequences have an additional C-terminal domain homologous with acidic proteins P1 and P2.

>cd05796 Ribosomal_P0_like Ribosomal protein L10 family, P0-like protein subfamily; composed of uncharacterized eukaryotic proteins with similarity to the 60S ribosomal protein P0, including the Saccharomyces cerevisiae protein called mRNA turnover protein 4 (MRT4)

Probab=100.00  E-value=8.6e-55  Score=364.28  Aligned_cols=163  Identities=60%  Similarity=0.998  Sum_probs=160.1

Q ss_pred             HHHHHHHHHHHHHHhhCCeEEEEEeCCCCcHHHHHHHHhhCCceEEEEehHHHHHHhhccchhhhhhchhhhhhhccCce
Q psy15723         21 ERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDWKDSRFFFGKNKVMAYALGKSQEDEIEKNIHVVSSALKGQC  100 (243)
Q Consensus        21 e~K~~~v~~l~e~l~~y~~v~v~~~~~l~~~ql~~lR~~lr~s~~~vgKNtLmk~AL~~~~e~e~~~~l~~L~~~L~G~~  100 (243)
                      +||.+++++|+++|++|+++||++|+|++++|+++||+.||+++|+|||||||++||++++++++.++++.|+++|+|++
T Consensus         1 e~K~~~v~~l~e~l~~y~~v~iv~~~gl~~~ql~~iR~~lr~~~~~v~KNtl~~~Al~~~~~~~~~~~~~~L~~~l~G~~   80 (163)
T cd05796           1 ELKQKLVENIREAVDKYKYIYVFSVDNMRNNKLKDIRQEWKDSRFFFGKNKVMQVALGRTPEDEYKPNLHKLSKYLKGQV   80 (163)
T ss_pred             ChHHHHHHHHHHHHHhCCEEEEEEecCCCHHHHHHHHHHhcCCEEEEEchHHHHHHHhhCccccccccHHHHHHHhCCCE
Confidence            58999999999999999999999999999999999999999779999999999999999988888899999999999999


Q ss_pred             EEEEecCCHHHHHHHHhhcCcccccccCCCccceEEEcCCCCCCCCCCChhHhhhcCceeeecCceEEEccCeeEeecCc
Q psy15723        101 GLLFTNRSKDDVLMWFDVYEDEDFAKSGFISTEDVELKEGPLPEFPHSIEPQLRQLGLQTNLNKGVVTLFKDHTVCKKGD  180 (243)
Q Consensus       101 allFTn~dp~~v~k~l~~~~~~~~Ak~G~iA~~dvvI~~G~t~~~p~~~~~~~~kLgiptki~kG~I~i~~d~~v~k~Ge  180 (243)
                      ||+||++||++++++|.+|+.++|||+|++||+||+||+|||+++||||+|+||+|||||+|++|+|+|.+|++||++||
T Consensus        81 ~lift~~dp~~v~k~l~~~~~~~~ar~G~iA~~dvvi~~G~~~~~p~~~~~~~~~lgiptki~~G~I~i~~d~~v~k~G~  160 (163)
T cd05796          81 GLLFTNEPPEEVIEYFDSYSEPDFARAGSIATETVTLPEGPLEQFPHSMEPQLRKLGLPTKLKKGVITLEADYVVCEEGK  160 (163)
T ss_pred             EEEEECCCHHHHHHHHHHcCCcccccCCCCCCceEEEeCCCCCCCCCCcchHHHHcCCCeEEeCCEEEEecCcEEECCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccC
Q psy15723        181 VLT  183 (243)
Q Consensus       181 ~vs  183 (243)
                      +||
T Consensus       161 ~v~  163 (163)
T cd05796         161 VLT  163 (163)
T ss_pred             CCc
Confidence            986

MRT4 may be involved in mRNA decay. P0 forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. It occupies the L7/L12 stalk of the ribosome. The stalk is known to contain the binding site for elongation factors EF-G and EF-Tu; however, there is disagreement as to whether or not P0 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, P0 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WAS

>PRK04019 rplP0 acidic ribosomal protein P0; Validated

Probab=100.00  E-value=1.9e-55  Score=404.65  Aligned_cols=198  Identities=25%  Similarity=0.370  Sum_probs=189.9

Q ss_pred             CchHHHHHHHHHHHHHHhhCCeEEEEEeCCCCcHHHHHHHHhhC-CceEEEEehHHHHHHhhccchhhhhhchhhhhhhc
Q psy15723         18 KGLERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDWK-DSRFFFGKNKVMAYALGKSQEDEIEKNIHVVSSAL   96 (243)
Q Consensus        18 k~~e~K~~~v~~l~e~l~~y~~v~v~~~~~l~~~ql~~lR~~lr-~s~~~vgKNtLmk~AL~~~~e~e~~~~l~~L~~~L   96 (243)
                      +.++||.++|++|+++|++|+++||++|+|++++|+|+||+.|| .++|+|+|||||++||+++.+    ++++.|.++|
T Consensus         3 ~~~e~K~~~v~el~~~l~~~~~v~iv~~~gl~~~ql~~lR~~lr~~~~~~v~KNtL~~~Al~~~~~----~~~~~L~~~l   78 (330)
T PRK04019          3 HVPEWKKEEVEELKELIKSYPVVGIVDLEGIPARQLQEIRRKLRGKAELKVSKNTLIKRALEEAGE----EDLEKLEDYL   78 (330)
T ss_pred             chHHHHHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHHcCCEEEEEehHHHHHHHHhcCc----ccHHHHHhhc
Confidence            55899999999999999999999999999999999999999999 489999999999999999863    5799999999


Q ss_pred             cCceEEEEecCCHHHHHHHHhhcCcccccccCCCccceEEEcCCCCCCCCCCChhHhhhcCceeeecCceEEEccCeeEe
Q psy15723         97 KGQCGLLFTNRSKDDVLMWFDVYEDEDFAKSGFISTEDVELKEGPLPEFPHSIEPQLRQLGLQTNLNKGVVTLFKDHTVC  176 (243)
Q Consensus        97 ~G~~allFTn~dp~~v~k~l~~~~~~~~Ak~G~iA~~dvvI~~G~t~~~p~~~~~~~~kLgiptki~kG~I~i~~d~~v~  176 (243)
                      +|++||+|||+||++++++|.+|+.++|||+|++||+||+||+|||++.||+|+++||+|||||+|++|+|+|.+|++||
T Consensus        79 ~G~~alift~~dp~~v~k~l~~~~~~~~ak~G~iA~~divip~G~t~~~P~~~~~~l~~lgipt~i~~G~I~i~~~~~v~  158 (330)
T PRK04019         79 EGQVALIFTNMNPFKLYKLLEKSKTPAPAKPGDIAPEDIVVPAGPTGFPPGPILSELQKLGIPARIQKGKIVIKKDTVVA  158 (330)
T ss_pred             cCCEEEEEECCCHHHHHHHHHHcCCcccCCCCCCCCCeEEEcCCCCCCCCcccHHHHHHcCCCeEecCCEEEEecCeEEe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCcccCHHHHHHHHHcCcCceeeEEEEEEEEeCCCceEEEccCC
Q psy15723        177 KKGDVLTPEQARILKLLKKKMAKFKVLLYLWYNKKEGTFENLLDR  221 (243)
Q Consensus       177 k~Ge~vs~~qA~lL~~lgikp~~~~l~l~~~~~~~~g~~~~~~~~  221 (243)
                      ++|++|||+||++|++|||+|++|++++.++|++  |.++..+.+
T Consensus       159 ~~G~~v~~~~a~lL~~LgI~p~~~~~~i~a~~~~--G~~~~~~~l  201 (330)
T PRK04019        159 KAGEVISPELANVLQKLGIKPIEVGLDLKAAYED--GVIYTPEVL  201 (330)
T ss_pred             cCCCCcCHHHHHHHHHcCCCHHHhhhHHHHHHhc--CCccCHHHc
Confidence            9999999999999999999999999999999984  678875544

>KOG0815|consensus

Probab=100.00  E-value=1.8e-47  Score=326.88  Aligned_cols=206  Identities=21%  Similarity=0.341  Sum_probs=192.7

Q ss_pred             ccCchHHHHHHHHHHHHHHhhCCeEEEEEeCCCCcHHHHHHHHhhC-CceEEEEehHHHHHHhhccchhhhhhchhhhhh
Q psy15723         16 VKKGLERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDWK-DSRFFFGKNKVMAYALGKSQEDEIEKNIHVVSS   94 (243)
Q Consensus        16 ~Kk~~e~K~~~v~~l~e~l~~y~~v~v~~~~~l~~~ql~~lR~~lr-~s~~~vgKNtLmk~AL~~~~e~e~~~~l~~L~~   94 (243)
                      +.-.++||..+..++++++++|+.++++..+|+.+.|||+||+.|| .+.+.|||||+|++|+....+.  .+.++.+.+
T Consensus         3 ~~~~~e~k~~y~~K~~~L~~~y~~~~~v~~dnv~s~ql~~ir~~lrg~a~vlmgkntm~rrair~~~~~--~~~~~~llp   80 (245)
T KOG0815|consen    3 RADKAEKKAVYFTKLRQLFEEYPKCFVVGADNVGSTQLQNIRKQLRGDAVVLMGKNTMMRRAIRGHLEN--NPALEKLLP   80 (245)
T ss_pred             chhhhHHHHHHHHHHHHHHHhcCceEEEeecchhhHHHHHHHHHhcCceeeeechhHHHHHHHHhccCC--cHHHHhhcc
Confidence            4456799999999999999999999999999999999999999999 5999999999999999987643  467899999


Q ss_pred             hccCceEEEEecCCHHHHHHHHhhcCcccccccCCCccceEEEcCCCCCCCCCCChhHhhhcCceeeecCceEEEccCee
Q psy15723         95 ALKGQCGLLFTNRSKDDVLMWFDVYEDEDFAKSGFISTEDVELKEGPLPEFPHSIEPQLRQLGLQTNLNKGVVTLFKDHT  174 (243)
Q Consensus        95 ~L~G~~allFTn~dp~~v~k~l~~~~~~~~Ak~G~iA~~dvvI~~G~t~~~p~~~~~~~~kLgiptki~kG~I~i~~d~~  174 (243)
                      +++|++|++||+.|..++.+.+.++++.++||+|.+||+||+||++.|++-| ...++||+|||||||.+|+|||.+|+.
T Consensus        81 ~~~g~vgfvftk~~L~ei~~~i~~n~~~apar~GaiAp~dV~V~~~nTg~~P-~ktsfFQaLgIpTKIsrGtiEIlsdV~  159 (245)
T KOG0815|consen   81 VVKGNVGFVFTKGDLKEIRKEIIENKVGAPARVGAIAPIDVTVPAQNTGLGP-EKTSFFQALGIPTKISRGTIEILSDVQ  159 (245)
T ss_pred             ceeeceeEEEEeccHHHHHHHHHhcccccccccCCcCCceEEeccccCCCCc-chhhhhhhcCCceeeecceEEecccce
Confidence            9999999999999999999999999999999999999999999999999888 578999999999999999999999999


Q ss_pred             EeecCcccCHHHHHHHHHcCcCceeeEEEEEEEEeCCCceEEE---ccCCcCCcc
Q psy15723        175 VCKKGDVLTPEQARILKLLKKKMAKFKVLLYLWYNKKEGTFEN---LLDREKTPM  226 (243)
Q Consensus       175 v~k~Ge~vs~~qA~lL~~lgikp~~~~l~l~~~~~~~~g~~~~---~~~~~~~~~  226 (243)
                      ++++||+|++++|.||.+|||+||.|||.+..+||+  |.+|.   +|++|||+.
T Consensus       160 lik~GDKVGaSEAtLLnmL~IsPFsyGLvv~qVyDn--Gsiy~pevLDiteE~l~  212 (245)
T KOG0815|consen  160 LIKTGDKVGASEATLLNMLNISPFSYGLVVQQVYDN--GSIYNPEVLDITEEDLF  212 (245)
T ss_pred             eeccCCccChhHHHHHhhhCCCccccceEEEEEecC--CcccChhhcCCcHHHHH
Confidence            999999999999999999999999999999999994  78885   677776653

>COG0244 RplJ Ribosomal protein L10 [Translation, ribosomal structure and biogenesis]

Probab=99.97  E-value=1.5e-32  Score=232.45  Aligned_cols=168  Identities=19%  Similarity=0.271  Sum_probs=159.3

Q ss_pred             chHHHHHHHHHHHHHHhhCCeEEEEEeCCCCcHHHHHHHHhhC--CceEEEEehHHHHHHhhccchhhhhhchhhhhhhc
Q psy15723         19 GLERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDWK--DSRFFFGKNKVMAYALGKSQEDEIEKNIHVVSSAL   96 (243)
Q Consensus        19 ~~e~K~~~v~~l~e~l~~y~~v~v~~~~~l~~~ql~~lR~~lr--~s~~~vgKNtLmk~AL~~~~e~e~~~~l~~L~~~L   96 (243)
                      .++||.++|+++++.|++|++++|+||+|+++.|+++||++||  ++.++|+||||+++||+++.       ++.|.++|
T Consensus         4 ~~e~K~~~v~el~e~~~~s~~~~i~dy~Gl~~~ql~~lR~~lr~~g~~lkV~KNtL~~rAl~~~~-------~e~l~~~l   76 (175)
T COG0244           4 AREWKKELVAELKELIKESPSVVIVDYRGLTVAQLTELRKKLREAGAKLKVVKNTLLRRALEEAG-------LEGLDDLL   76 (175)
T ss_pred             cHHHHHHHHHHHHHHHhhCCEEEEEEeCCCcHHHHHHHHHHHHhCCcEEEEEhhHHHHHHHHhcc-------hhhHHHhc
Confidence            4699999999999999999999999999999999999999999  49999999999999999984       66699999


Q ss_pred             cCceEEEEecCCHHHHHHHHhhcCcccccccCCCccceEEEcCCCCCCCCCCChhHhhhcCceeeecCceEEEccCeeEe
Q psy15723         97 KGQCGLLFTNRSKDDVLMWFDVYEDEDFAKSGFISTEDVELKEGPLPEFPHSIEPQLRQLGLQTNLNKGVVTLFKDHTVC  176 (243)
Q Consensus        97 ~G~~allFTn~dp~~v~k~l~~~~~~~~Ak~G~iA~~dvvI~~G~t~~~p~~~~~~~~kLgiptki~kG~I~i~~d~~v~  176 (243)
                      +||+|++||++||.+++|+|.+|.++.    |++++.++.+++|+             .+++|+.+..|+|.+.++.+++
T Consensus        77 ~Gp~ai~fs~~dp~~~~K~~~~f~k~~----~~~~~~~~~~~eg~-------------~l~~~~v~~~aklp~~~el~~~  139 (175)
T COG0244          77 KGPTAIAFSNEDPVAAAKLLKDFAKEA----GDKAPIKGGVPEGK-------------VLGAAEVIALAKLPSKEELVVM  139 (175)
T ss_pred             cCCeEEEEecCCHHHHHHHHHHHhhhh----cccceEEEEEecCc-------------ccCHHHHHHHhcCCcHHHHHHH
Confidence            999999999999999999998776655    99999999999997             4899999999999999999999


Q ss_pred             ecCcccCHHHHHHHHHcCcCceeeEEEEEEEEeCC
Q psy15723        177 KKGDVLTPEQARILKLLKKKMAKFKVLLYLWYNKK  211 (243)
Q Consensus       177 k~Ge~vs~~qA~lL~~lgikp~~~~l~l~~~~~~~  211 (243)
                      ..|....|.. +++..|++.|..+++.+.++|+++
T Consensus       140 l~g~~~ap~~-~~~~~L~a~~~~~~~~~~a~~~~g  173 (175)
T COG0244         140 LLGVLQAPAT-KLLRALKAVPDKVGLKLLAAYEKG  173 (175)
T ss_pred             HHHhhHhhHH-HHHHHHhccHHHHhhHHHHhhccC
Confidence            9999999999 999999999999999999999864

>cd00379 Ribosomal_L10_P0 Ribosomal protein L10 family; composed of the large subunit ribosomal protein called L10 in bacteria, P0 in eukaryotes, and L10e in archaea, as well as uncharacterized P0-like eukaryotic proteins

Probab=99.91  E-value=1.8e-24  Score=178.03  Aligned_cols=120  Identities=26%  Similarity=0.397  Sum_probs=111.6

Q ss_pred             HHHHHHHHHHHHHHhhCCeEEEEEeCCCCcHHHHHHHHhhC--CceEEEEehHHHHHHhhccchhhhhhchhhhhhhccC
Q psy15723         21 ERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDWK--DSRFFFGKNKVMAYALGKSQEDEIEKNIHVVSSALKG   98 (243)
Q Consensus        21 e~K~~~v~~l~e~l~~y~~v~v~~~~~l~~~ql~~lR~~lr--~s~~~vgKNtLmk~AL~~~~e~e~~~~l~~L~~~L~G   98 (243)
                      ++|.++++++++++++|+.+++++|+|++++++++||+.|+  +++++|+|||||++||++++       ++.+.++|+|
T Consensus         1 ~~K~~~v~~l~~~l~~~~~v~v~~~~~l~~~~~~~lR~~l~~~~~~~~v~KNtl~~~Al~~t~-------~~~~~~~l~G   73 (155)
T cd00379           1 EKKEELVEELKELLKKYKSVVVVDYRGLTVAQLTELRKELRESGAKLKVGKNTLMRRALKGTG-------FEELKPLLKG   73 (155)
T ss_pred             CchHHHHHHHHHHHHhCCEEEEEecCCCcHHHHHHHHHHHHHcCCEEEEEehHHHHHHHcCCC-------ccchhhhCcC
Confidence            47999999999999999999999999999999999999999  48999999999999999985       6788889999


Q ss_pred             ceEEEEecCCHHHHHHHHhhcCcc---cccccCCCccceEEEcCCCCCCCCCC
Q psy15723         99 QCGLLFTNRSKDDVLMWFDVYEDE---DFAKSGFISTEDVELKEGPLPEFPHS  148 (243)
Q Consensus        99 ~~allFTn~dp~~v~k~l~~~~~~---~~Ak~G~iA~~dvvI~~G~t~~~p~~  148 (243)
                      ++|++||++||.++++++.+|...   .++++|.++ .+|+.|.+++...+.|
T Consensus        74 ~~~~~f~~~~~~~~~k~~~~~~k~~~~~~~k~g~~~-~~v~~~~~~~~l~~lp  125 (155)
T cd00379          74 PTALAFTNEDPVEVAKVLKDFAKENKKLFAKGGVVA-GKVLDPAGVTALAKLP  125 (155)
T ss_pred             CEEEEEeCCChHHHHHHHHHHHHhCCCceEEEEEEc-CEecCHHHHHHHhcCC
Confidence            999999999999999999999988   899999999 8999999977655544

In all three kingdoms, L10 forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. The N-terminal domain (NTD) of L10 interacts with L11 protein and forms the base of the L7/L12 stalk, while the extended C-terminal helix binds to two or three dimers of the NTD of L7/L12 (L7 and L12 are identical except for an acetylated N-terminus). The L7/L12 stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been sho

>PF00466 Ribosomal_L10: Ribosomal protein L10; InterPro: IPR001790 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=99.89  E-value=3.1e-23  Score=159.47  Aligned_cols=96  Identities=22%  Similarity=0.401  Sum_probs=89.9

Q ss_pred             CchHHHHHHHHHHHHHHhhCCeEEEEEeCCCCcHHHHHHHHhhC--CceEEEEehHHHHHHhhccchhhhhhchh-hhhh
Q psy15723         18 KGLERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDWK--DSRFFFGKNKVMAYALGKSQEDEIEKNIH-VVSS   94 (243)
Q Consensus        18 k~~e~K~~~v~~l~e~l~~y~~v~v~~~~~l~~~ql~~lR~~lr--~s~~~vgKNtLmk~AL~~~~e~e~~~~l~-~L~~   94 (243)
                      ++|++|.++++++++.|++|+.+++++|+|++++|+++||++||  |++++|+|||||++||++++       .+ .|.+
T Consensus         1 m~~~~K~~~v~~~~~~l~~~~~v~v~~~~~l~~~~~~~lR~~l~~~~~~~~v~KN~l~~~Al~~~~-------~~~~l~~   73 (100)
T PF00466_consen    1 MTKEKKEEIVEELKELLKKSKYVIVVDYNGLSANQLQELRKELRKKGGKFKVVKNTLMKKALKNTG-------FEEALSP   73 (100)
T ss_dssp             -SCHHHHHHHHHHHHHHHCSSEEEEEECTTSCHHHHHHHHHHHHHHTEEEEECSHHHHHHHHHHHH-------TSSSSSC
T ss_pred             CcHHHHHHHHHHHHHHHHhCCEEEEEEeCCCCHHHHHHHHHHHHhcCcEEEEecHHHHHHHHhcCc-------cccCccc
Confidence            36799999999999999999999999999999999999999999  69999999999999999985       33 5899


Q ss_pred             hccCceEEEEecCCHHHHHHHHhhcC
Q psy15723         95 ALKGQCGLLFTNRSKDDVLMWFDVYE  120 (243)
Q Consensus        95 ~L~G~~allFTn~dp~~v~k~l~~~~  120 (243)
                      +|+|++|++||++||.++++++.+|.
T Consensus        74 ~l~G~~~~if~~~d~~~~~k~l~~~~   99 (100)
T PF00466_consen   74 LLKGPTALIFSNEDPFEIAKILKKFA   99 (100)
T ss_dssp             CTSSSEEEEEESSSHHHHHHHHHHST
T ss_pred             cccCCEEEEEECCCHHHHHHHHHHhc
Confidence            99999999999999999999999875

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. On the basis of sequence similarities the following prokaryotic and eukaryotic ribosomal proteins can be grouped: Bacterial 50S ribosomal protein L10; Archaebacterial acidic ribosomal protein P0 homologue (L10E); Eukaryotic 60S ribosomal protein P0 (L10E). This entry represents the ribosomal protein L10P family, with includes the above mentioned ribosomal proteins.; GO: 0042254 ribosome biogenesis, 0005622 intracellular; PDB: 3A1Y_G 3D5D_J 3PYT_I 3PYV_I 3D5B_J 3PYO_I 3PYR_I 3MS1_I 3MRZ_I 1VQ9_G ....

>PRK00099 rplJ 50S ribosomal protein L10; Reviewed

Probab=99.87  E-value=7.9e-22  Score=166.12  Aligned_cols=97  Identities=15%  Similarity=0.258  Sum_probs=92.0

Q ss_pred             chHHHHHHHHHHHHHHhhCCeEEEEEeCCCCcHHHHHHHHhhC--CceEEEEehHHHHHHhhccchhhhhhchhhhhhhc
Q psy15723         19 GLERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDWK--DSRFFFGKNKVMAYALGKSQEDEIEKNIHVVSSAL   96 (243)
Q Consensus        19 ~~e~K~~~v~~l~e~l~~y~~v~v~~~~~l~~~ql~~lR~~lr--~s~~~vgKNtLmk~AL~~~~e~e~~~~l~~L~~~L   96 (243)
                      +|++|.++++++++++++|+.+++++|+|++++|+++||+.||  +++++|+|||||++||+++       +++.|.++|
T Consensus         2 ~r~~K~~~v~~l~~~l~~~~~v~v~~~~gl~~~~~~~lR~~lr~~~~~~~V~KNtL~~~Al~~~-------~~~~l~~~l   74 (172)
T PRK00099          2 NREEKKEIVAELAEKLKKAQSAVVADYRGLTVAQMTELRKKLREAGVEYKVVKNTLARRALEGT-------GFEGLDDLL   74 (172)
T ss_pred             CHHHHHHHHHHHHHHHHhCCEEEEEecCCCcHHHHHHHHHHHHHcCCEEEEehhHHHHHHHhcC-------CchhhhhhC
Confidence            5789999999999999999999999999999999999999999  5899999999999999998       488999999


Q ss_pred             cCceEEEEecCCHHHHHHHHhhcCcc
Q psy15723         97 KGQCGLLFTNRSKDDVLMWFDVYEDE  122 (243)
Q Consensus        97 ~G~~allFTn~dp~~v~k~l~~~~~~  122 (243)
                      +|++|++||++||.++++++.+|.+.
T Consensus        75 ~G~~al~fs~~d~~~~~k~l~~f~K~  100 (172)
T PRK00099         75 KGPTAIAFSYEDPVAAAKVLKDFAKD  100 (172)
T ss_pred             cCCeEEEEeCCChHHHHHHHHHHHhh
Confidence            99999999999999999999988653

>cd05797 Ribosomal_L10 Ribosomal protein L10 family, L10 subfamily; composed of bacterial 50S ribosomal protein and eukaryotic mitochondrial 39S ribosomal protein, L10

Probab=99.87  E-value=1.1e-21  Score=162.77  Aligned_cols=97  Identities=16%  Similarity=0.285  Sum_probs=92.1

Q ss_pred             chHHHHHHHHHHHHHHhhCCeEEEEEeCCCCcHHHHHHHHhhC--CceEEEEehHHHHHHhhccchhhhhhchhhhhhhc
Q psy15723         19 GLERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDWK--DSRFFFGKNKVMAYALGKSQEDEIEKNIHVVSSAL   96 (243)
Q Consensus        19 ~~e~K~~~v~~l~e~l~~y~~v~v~~~~~l~~~ql~~lR~~lr--~s~~~vgKNtLmk~AL~~~~e~e~~~~l~~L~~~L   96 (243)
                      .+++|.++++++++++++|+.+++++|+|++++|+++||++||  |++++|+|||||++||++++       ++.|.++|
T Consensus         1 ~~~~K~~~v~~l~~~l~~~~~v~v~~~~gl~~~~~~~lR~~lr~~~~~~~V~KNtL~~~Al~~t~-------~~~l~~~l   73 (157)
T cd05797           1 NREKKEEIVAELKEKLKEAKSVVVADYRGLTVAQLTELRKELREAGVKLKVVKNTLAKRALEGTG-------FEDLDDLL   73 (157)
T ss_pred             ChHHHHHHHHHHHHHHHhCCEEEEEecCCCcHHHHHHHHHHHHHcCCEEEEehhHHHHHHHhcCC-------chhhHhhC
Confidence            3789999999999999999999999999999999999999999  58999999999999999984       78999999


Q ss_pred             cCceEEEEecCCHHHHHHHHhhcCcc
Q psy15723         97 KGQCGLLFTNRSKDDVLMWFDVYEDE  122 (243)
Q Consensus        97 ~G~~allFTn~dp~~v~k~l~~~~~~  122 (243)
                      +|++|++||++||.++++++.+|.+.
T Consensus        74 ~G~~al~f~~~d~~~~~k~l~~f~k~   99 (157)
T cd05797          74 KGPTAIAFSEEDPVAAAKVLKDFAKE   99 (157)
T ss_pred             cCCEEEEEeCCChHHHHHHHHHHHHh
Confidence            99999999999999999999988764

L10 occupies the L7/L12 stalk of the ribosome. The N-terminal domain (NTD) of L10 interacts with L11 protein and forms the base of the L7/L12 stalk, while the extended C-terminal helix binds to two or three dimers of the NTD of L7/L12 (L7 and L12 are identical except for an acetylated N-terminus). The L7/L12 stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-in

>KOG4241|consensus

Probab=97.15  E-value=0.0019  Score=56.16  Aligned_cols=85  Identities=14%  Similarity=0.151  Sum_probs=75.6

Q ss_pred             HHHHHHHHhhCCeEEEEEeCCCCcHHHHHHHHhhC--CceEEEEehHHHHHHhhccchhhhhhchhhhhhhccCceEEEE
Q psy15723         27 RDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDWK--DSRFFFGKNKVMAYALGKSQEDEIEKNIHVVSSALKGQCGLLF  104 (243)
Q Consensus        27 v~~l~e~l~~y~~v~v~~~~~l~~~ql~~lR~~lr--~s~~~vgKNtLmk~AL~~~~e~e~~~~l~~L~~~L~G~~allF  104 (243)
                      .-++...++++..+.|+.+--+++..+--.|..||  +..|+..-|++++.++++++       ++.|.+++.||.+++|
T Consensus        79 ~re~~~v~~~~R~~Avcq~~~v~a~d~~~~r~QLrk~ni~~ksygnkIlk~~~~~t~-------y~~l~plfvgnh~ill  151 (245)
T KOG4241|consen   79 LREDWMVREEFRVMAVCQFLPVPARDLWFARNQLRKKNIEFKSYGNKILKKIFDKTP-------YSSLNPLFVGNHAILL  151 (245)
T ss_pred             HHHHHHHHhhhhheeeeecccCcHHHHHHHHHHHHhccchhhhchHHHHHHHHhcCc-------hhhhhhheeccceEEE
Confidence            34567778999999999999999999999999999  69999999999999999985       8999999999999999


Q ss_pred             ecCCHHHHHHHHhhc
Q psy15723        105 TNRSKDDVLMWFDVY  119 (243)
Q Consensus       105 Tn~dp~~v~k~l~~~  119 (243)
                      +. |+.+++.++...
T Consensus       152 ~~-d~~kik~~lri~  165 (245)
T KOG4241|consen  152 AK-DISKIKSILRIT  165 (245)
T ss_pred             cC-ChHHHHHHHHHH
Confidence            84 677788777644

>PRK04019 rplP0 acidic ribosomal protein P0; Validated

Probab=96.87  E-value=0.00022  Score=66.21  Aligned_cols=167  Identities=14%  Similarity=0.099  Sum_probs=111.9

Q ss_pred             HHHHHHHHHHHhhCCeEEEEEeCC----CCc---HHHHHHHHhhCC-ceEEEEehHH--HHHHhhccchhhh-hhchhhh
Q psy15723         24 QNLRDELVKAVEKYNNIFVFSVQN----MRN---SKLKDVRNDWKD-SRFFFGKNKV--MAYALGKSQEDEI-EKNIHVV   92 (243)
Q Consensus        24 ~~~v~~l~e~l~~y~~v~v~~~~~----l~~---~ql~~lR~~lr~-s~~~vgKNtL--mk~AL~~~~e~e~-~~~l~~L   92 (243)
                      ...+.+||..+.....+.+.--+=    +..   ..+..|-..|+| .-+.|.....  +.+.+.......+ ++|-   
T Consensus        35 ~~ql~~lR~~lr~~~~~~v~KNtL~~~Al~~~~~~~~~~L~~~l~G~~alift~~dp~~v~k~l~~~~~~~~ak~G~---  111 (330)
T PRK04019         35 ARQLQEIRRKLRGKAELKVSKNTLIKRALEEAGEEDLEKLEDYLEGQVALIFTNMNPFKLYKLLEKSKTPAPAKPGD---  111 (330)
T ss_pred             HHHHHHHHHHHHcCCEEEEEehHHHHHHHHhcCcccHHHHHhhccCCEEEEEECCCHHHHHHHHHHcCCcccCCCCC---
Confidence            345788888888764444432110    111   236777788885 4555664333  3344444322111 1111   


Q ss_pred             hhhccCceEEE---EecCCHHHHHHHHhhcCcccccccCC--CccceEEEcCCCCCCCCCCChhHhhhcCceeeecCceE
Q psy15723         93 SSALKGQCGLL---FTNRSKDDVLMWFDVYEDEDFAKSGF--ISTEDVELKEGPLPEFPHSIEPQLRQLGLQTNLNKGVV  167 (243)
Q Consensus        93 ~~~L~G~~all---FTn~dp~~v~k~l~~~~~~~~Ak~G~--iA~~dvvI~~G~t~~~p~~~~~~~~kLgiptki~kG~I  167 (243)
                         +.-...+|   -|+.+|..+...|.+...+..++.|.  +++.++++++|.+ ..|++ ...||+|||+....+++|
T Consensus       112 ---iA~~divip~G~t~~~P~~~~~~l~~lgipt~i~~G~I~i~~~~~v~~~G~~-v~~~~-a~lL~~LgI~p~~~~~~i  186 (330)
T PRK04019        112 ---IAPEDIVVPAGPTGFPPGPILSELQKLGIPARIQKGKIVIKKDTVVAKAGEV-ISPEL-ANVLQKLGIKPIEVGLDL  186 (330)
T ss_pred             ---CCCCeEEEcCCCCCCCCcccHHHHHHcCCCeEecCCEEEEecCeEEecCCCC-cCHHH-HHHHHHcCCCHHHhhhHH
Confidence               11111122   35679999999999999999999999  9999999999999 55544 888999999999999999


Q ss_pred             EEccCeeEeecCcccCHHHHHHHHHcCcCceeeEEEEEEEEe
Q psy15723        168 TLFKDHTVCKKGDVLTPEQARILKLLKKKMAKFKVLLYLWYN  209 (243)
Q Consensus       168 ~i~~d~~v~k~Ge~vs~~qA~lL~~lgikp~~~~l~l~~~~~  209 (243)
                           ..+...|..++++.+      +|.|..+...+..+|.
T Consensus       187 -----~a~~~~G~~~~~~~l------~i~~e~~~~~i~~A~~  217 (330)
T PRK04019        187 -----KAAYEDGVIYTPEVL------AIDEEKYRSDIQEAAQ  217 (330)
T ss_pred             -----HHHHhcCCccCHHHc------cCCHHHHHHHHHHHHH
Confidence                 567788999999877      6666666655555554

>PF07697 7TMR-HDED: 7TM-HD extracellular; InterPro: IPR011624 This entry represents the extracellular domain of the 7TM-HD (7TM Receptors with HD hydrolase) protein family []

Probab=82.03  E-value=1  Score=38.34  Aligned_cols=27  Identities=30%  Similarity=0.417  Sum_probs=23.1

Q ss_pred             EccCeeEeecCcccCHHHHHHHHHcCc
Q psy15723        169 LFKDHTVCKKGDVLTPEQARILKLLKK  195 (243)
Q Consensus       169 i~~d~~v~k~Ge~vs~~qA~lL~~lgi  195 (243)
                      |.++-+++++|++||+++..+|..||+
T Consensus       193 V~~Ge~IV~kGe~VT~e~~~~L~~l~~  219 (222)
T PF07697_consen  193 VKKGEVIVRKGEIVTEEQYEKLESLGL  219 (222)
T ss_pred             ccCCCEEecCCcEeCHHHHHHHHHcCC
Confidence            344446899999999999999999996

These proteins are known or predicted, to posses metal-dependent phospohydrolase activity.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	243
3a1y_G	284	The Structure Of Protein Complex Length = 284		9e-13
3j21_k	339	Promiscuous Behavior Of Proteins In Archaeal Riboso		2e-08
1jj2_G	348	Fully Refined Crystal Structure Of The Haloarcula M		4e-07
3cc2_G	348	The Refined Crystal Structure Of The Haloarcula Mar		4e-07

>pdb|3A1Y|G Chain G, The Structure Of Protein Complex Length = 284

Iteration: 1
 Score = 70.5 bits (171), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 81/168 (48%), Gaps = 10/168 (5%)
Query: 28  DELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDWKDSRFFF--GKNKVMAYALGKSQED-- 83
           +EL K ++ Y  I +  V +M    L  +R   +++       +N ++  A+ K+ ++  
Sbjct: 13  EELAKLIKSYPVIALVDVSSMPAYPLSQMRRLIRENGGLLRVSRNTLIELAIKKAAKELG 72
Query: 84  --EIEKNIHVVSSALKGQCGLLFTNRSKDDVLMWFDVYEDEDFAKSGFISTEDVELKEGP 141
             E+EK +  +        G+L TN +   +  +         AK G +  +DV +  GP
Sbjct: 73  KPELEKLVEYIDRG----AGILVTNMNPFKLYKFLQQNRQPAPAKPGAVVPKDVVVPAGP 128
Query: 142 LPEFPHSIEPQLRQLGLQTNLNKGVVTLFKDHTVCKKGDVLTPEQARI 189
            P  P  I  Q++ LG+   + KG VT+ KD TV K G+V+TPE A I
Sbjct: 129 TPLAPGPIVGQMQALGIPARIEKGKVTIQKDTTVLKAGEVITPELANI 176

>pdb|3J21|KK Chain k, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (50s Ribosomal Proteins) Length = 339

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 77/168 (45%), Gaps = 10/168 (5%)
Query: 28  DELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDWKDSRFFF--GKNKVMAYALGKSQED-- 83
           +EL   ++ Y  + +  V +M    L  +R   +++       +N ++  A+ K  ++  
Sbjct: 13  EELANLIKSYPVVALVDVSSMPAYPLSQMRRLIRENNGLLRVSRNTLIELAIKKVAQELG 72
Query: 84  --EIEKNIHVVSSALKGQCGLLFTNRSKDDVLMWFDVYEDEDFAKSGFISTEDVELKEGP 141
             E+EK I+ +    +G  G+L T  +   +  +         AK G    +DV +  GP
Sbjct: 73  KPELEKLINYI----EGGAGILVTTMNPFKLYKFLQQNRQPAPAKPGAKVPKDVVIPAGP 128
Query: 142 LPEFPHSIEPQLRQLGLQTNLNKGVVTLFKDHTVCKKGDVLTPEQARI 189
               P  I  Q++ +G+   + +G VT+ KD  V K G+ +TPE A I
Sbjct: 129 TSLAPGPIVGQMQAMGIPARIERGKVTIQKDTVVLKAGEEITPELANI 176

>pdb|1JJ2|G Chain G, Fully Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution Length = 348

Iteration: 1
 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 33/168 (19%), Positives = 79/168 (47%), Gaps = 6/168 (3%)
Query: 23  KQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDWKD-SRFFFGKNKVMAYALGKSQ 81
           KQ   D +V+ +E Y ++ V ++  + + +L+D+R D    +     +N ++  AL    
Sbjct: 16  KQEEVDAIVEMIESYESVGVVNIAGIPSRQLQDMRRDLHGTAELRVSRNTLLERAL---- 71
Query: 82  EDEIEKNIHVVSSALKGQCGLLFTNRSKDDVLMWFDVYEDEDFAKSGFISTEDVELKEGP 141
            D+++  +  ++  + GQ GL+ T+ +   +    +  +      +G ++  D+ + EG 
Sbjct: 72  -DDVDDGLEDLNGYITGQVGLIGTDDNPFSLFQELEASKTPAPIGAGEVAPNDIVIPEGD 130
Query: 142 LPEFPHSIEPQLRQLGLQTNLNKGVVTLFKDHTVCKKGDVLTPEQARI 189
               P     +L+ +G    + +G + +  D TV   G+ ++ E + +
Sbjct: 131 TGVDPGPFVGELQSVGADARIQEGSIQVLSDSTVLDTGEEVSQELSNV 178

>pdb|3CC2|G Chain G, The Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution With Rrna Sequence For The 23s Rrna And Genome-Derived Sequences For R-Proteins Length = 348

Iteration: 1
 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 33/168 (19%), Positives = 79/168 (47%), Gaps = 6/168 (3%)
Query: 23  KQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDWKD-SRFFFGKNKVMAYALGKSQ 81
           KQ   D +V+ +E Y ++ V ++  + + +L+D+R D    +     +N ++  AL    
Sbjct: 16  KQEEVDAIVEMIESYESVGVVNIAGIPSRQLQDMRRDLHGTAELRVSRNTLLERAL---- 71
Query: 82  EDEIEKNIHVVSSALKGQCGLLFTNRSKDDVLMWFDVYEDEDFAKSGFISTEDVELKEGP 141
            D+++  +  ++  + GQ GL+ T+ +   +    +  +      +G ++  D+ + EG 
Sbjct: 72  -DDVDDGLEDLNGYITGQVGLIGTDDNPFSLFQELEASKTPAPIGAGEVAPNDIVIPEGD 130
Query: 142 LPEFPHSIEPQLRQLGLQTNLNKGVVTLFKDHTVCKKGDVLTPEQARI 189
               P     +L+ +G    + +G + +  D TV   G+ ++ E + +
Sbjct: 131 TGVDPGPFVGELQSVGADARIQEGSIQVLSDSTVLDTGEEVSQELSNV 178

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	243
3jsy_A	213	Acidic ribosomal protein P0 homolog; ribonucleopro	100.0
3j21_k	339	Acidic ribosomal protein P0 homolog; archaea, arch	100.0
3iz5_s	319	60S acidic ribosomal protein P0 (L10P); eukaryotic	100.0
3u5i_q	312	A0, L10E, 60S acidic ribosomal protein P0; transla	100.0
1vq8_G	348	Acidic ribosomal protein P0 homolog; ribosome 50S,	100.0
2zkr_g	317	60S acidic ribosomal protein P0; protein-RNA compl	100.0
3a1y_G	284	Acidic ribosomal protein P0; stalk, helix SPIN, ri	100.0
2j01_J	173	50S ribosomal protein L10; ribosome, tRNA, paromom	99.89
1zav_A	180	50S ribosomal protein L10; ribosome structure and	99.88
3sgf_H	165	50S ribosomal protein L10; typeii release factor b	99.83

>3jsy_A Acidic ribosomal protein P0 homolog; ribonucleoprotein; 1.60A {Methanocaldococcus jannaschii}

Probab=100.00  E-value=2e-65  Score=443.97  Aligned_cols=206  Identities=17%  Similarity=0.286  Sum_probs=198.3

Q ss_pred             hHHHHHHHHHHHHHHhhCCeEEEEEeCCCCcHHHHHHHHhhC-CceEEEEehHHHHHHhhccchhhhhhchhhhhhhccC
Q psy15723         20 LERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDWK-DSRFFFGKNKVMAYALGKSQEDEIEKNIHVVSSALKG   98 (243)
Q Consensus        20 ~e~K~~~v~~l~e~l~~y~~v~v~~~~~l~~~ql~~lR~~lr-~s~~~vgKNtLmk~AL~~~~e~e~~~~l~~L~~~L~G   98 (243)
                      ++||.++|++|++++++|+++||++|+||+++|+++||+.|| +++|+|||||||++||+++.++|++|++++|.++|+|
T Consensus         2 ~e~K~~~v~el~e~l~~~~~v~v~~~~gl~~~ql~~lR~~lr~~~~~~v~KNtL~r~Al~~~~~~e~~~~~~~L~~~l~G   81 (213)
T 3jsy_A            2 APWKIEEVKTLKGLIKSKPVVAIVDMMDVPAPQLQEIRDKIRDKVKLRMSRNTLIIRALKEAAEELNNPKLAELANYVER   81 (213)
T ss_dssp             CHHHHHHHHHHHHHHHHSSEEEEEECCSCCHHHHHHHHHHHTTTEEEEECCHHHHHHHHHHHHHHTTCGGGGGGGGGCCS
T ss_pred             chHHHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHhCCCEEEEEeHHHHHHHHhhchhhhcccchhHHHHhCcC
Confidence            489999999999999999999999999999999999999999 4899999999999999999888999999999999999


Q ss_pred             ceEEEEecCCHHHHHHHHhhcCcccccccCCCccceEEEcCCCCCCCCCCChhHhhhcCceeeecCceEEEccCeeEeec
Q psy15723         99 QCGLLFTNRSKDDVLMWFDVYEDEDFAKSGFISTEDVELKEGPLPEFPHSIEPQLRQLGLQTNLNKGVVTLFKDHTVCKK  178 (243)
Q Consensus        99 ~~allFTn~dp~~v~k~l~~~~~~~~Ak~G~iA~~dvvI~~G~t~~~p~~~~~~~~kLgiptki~kG~I~i~~d~~v~k~  178 (243)
                      ++||+||++||.+++++|.+|++++|||+|++||+||+||+|||+++||+|+|+||+|||||+|++|+|+|.+|++||++
T Consensus        82 ~~~l~Ft~~dp~~v~k~l~~~~~~~~Ar~GaiAp~dV~ip~G~t~~~p~~~~~~~q~lgiptki~~G~I~i~~d~~v~k~  161 (213)
T 3jsy_A           82 GAAILVTDMNPFKLYKLLEENKSPAPVRGGQIAPCDIKVEKGSTGMPPGPFLGELKSVGIPAAIEKGKIAIKEDKVVVKK  161 (213)
T ss_dssp             SEEEEEESSCHHHHHHHHHHSCEEECCCTTCBCSSCEEECSEEEEECSSTHHHHHHHTTCCEEEETTEEEECSCEEEECT
T ss_pred             CeEEEEeCCCHHHHHHHHHHcCCcccccCCCcCCceEEECCCCCCCCCCccHHHHHHcCCceEeecCeEEEccceEEEec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccCHHHHHHHHHcCcCceeeEEEEEEEEeCCCceEEE---ccCCcCCccc
Q psy15723        179 GDVLTPEQARILKLLKKKMAKFKVLLYLWYNKKEGTFEN---LLDREKTPMD  227 (243)
Q Consensus       179 Ge~vs~~qA~lL~~lgikp~~~~l~l~~~~~~~~g~~~~---~~~~~~~~~~  227 (243)
                      ||+||++||+||++|||+|++|+|.|.++||+  |.+|.   |+++++++.+
T Consensus       162 G~~v~~~~A~lL~~l~i~p~~~~l~l~~~~~~--g~i~~~~~L~i~~e~~~~  211 (213)
T 3jsy_A          162 GEVVSPKLAAVLDRLGIKPIKVGLNILAVYED--GIIYTPDVLKVDEEKLLA  211 (213)
T ss_dssp             TSBCCHHHHHHHHHTTCCCEEESCEEEEEEET--TEEECHHHHHHHCSCTTS
T ss_pred             CCCcCHHHHHHHHHcCCCcEEEEEEEEEEEeC--CceeCHHHcccCHHHHhh
Confidence            99999999999999999999999999999995  78995   6677766544

>3j21_k Acidic ribosomal protein P0 homolog; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=100.00  E-value=2e-62  Score=450.78  Aligned_cols=207  Identities=23%  Similarity=0.322  Sum_probs=196.4

Q ss_pred             CchHHHHHHHHHHHHHHhhCCeEEEEEeCCCCcHHHHHHHHhhC--CceEEEEehHHHHHHhhccchhhhhhchhhhhhh
Q psy15723         18 KGLERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDWK--DSRFFFGKNKVMAYALGKSQEDEIEKNIHVVSSA   95 (243)
Q Consensus        18 k~~e~K~~~v~~l~e~l~~y~~v~v~~~~~l~~~ql~~lR~~lr--~s~~~vgKNtLmk~AL~~~~e~e~~~~l~~L~~~   95 (243)
                      +.++||.++|++|++++++|+++||++|+||+++|+++||+.||  |++|+|||||||++||+++.++|++|++++|.++
T Consensus         3 ~~~e~K~~~v~el~e~l~~~~~v~v~~~~gl~v~ql~~lR~~lr~~g~~~~v~KNtL~r~Al~~~~~~e~~~~l~~L~~~   82 (339)
T 3j21_k            3 HVAEWKKKEVEELANLIKSYPVVALVDVSSMPAYPLSQMRRLIRENNGLLRVSRNTLIELAIKKVAQELGKPELEKLINY   82 (339)
T ss_dssp             ---CCTTTHHHHHHHHHHHSSEEEEEECTTCCTTHHHHHHHHHHHTTEEEECCHHHHSCHHHHHHHSSCCCSSSSSSSCC
T ss_pred             ccHHHHHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHhcCCeEEEEEhHHHHHHHHhcChhhhccccHHHHHHH
Confidence            46789999999999999999999999999999999999999999  4899999999999999999888899999999999


Q ss_pred             ccCceEEEEecCCHHHHHHHHhhcCcccccccCCCccceEEEcCCCCCCCCCCChhHhhhcCceeeecCceEEEccCeeE
Q psy15723         96 LKGQCGLLFTNRSKDDVLMWFDVYEDEDFAKSGFISTEDVELKEGPLPEFPHSIEPQLRQLGLQTNLNKGVVTLFKDHTV  175 (243)
Q Consensus        96 L~G~~allFTn~dp~~v~k~l~~~~~~~~Ak~G~iA~~dvvI~~G~t~~~p~~~~~~~~kLgiptki~kG~I~i~~d~~v  175 (243)
                      |+||+||+||++||.+++++|.+|++++|||+|.+||+||+||+|||+++||+|+|+||+|||||+|++|+|+|.+|++|
T Consensus        83 L~G~~~l~Ft~~dp~~v~k~l~~~~~~~~Ar~GaiAp~dV~Ip~G~t~~~p~~~~~~fq~lgiptki~~G~I~i~~d~~v  162 (339)
T 3j21_k           83 IEGGAGILVTTMNPFKLYKFLQQNRQPAPAKPGAKVPKDVVIPAGPTSLAPGPIVGQMQAMGIPARIERGKVTIQKDTVV  162 (339)
T ss_dssp             CCTTEEEEEESSCHHHHHHHHHHSCCCCCCCTTCBCSSCEEECCEECSCCSSHHHHHHHHHTCCEEEETTEEEECSCEEE
T ss_pred             hcCCeEEEEECCCHHHHHHHHHHcCCcccccCCCcCCceEEecCCCCCCCCCccHHHHHHcCCCeEeccCeEEEccceEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eecCcccCHHHHHHHHHcCcCceeeEEEEEEEEeCCCceEEE---ccCCcCCcc
Q psy15723        176 CKKGDVLTPEQARILKLLKKKMAKFKVLLYLWYNKKEGTFEN---LLDREKTPM  226 (243)
Q Consensus       176 ~k~Ge~vs~~qA~lL~~lgikp~~~~l~l~~~~~~~~g~~~~---~~~~~~~~~  226 (243)
                      |++|++||++||+||++|||+|++|+|.|.++||+  |.+|.   |+++++++.
T Consensus       163 ~k~G~~v~~~~A~lL~~l~i~p~~~~l~l~~~~~~--g~i~~~~~L~i~~e~~~  214 (339)
T 3j21_k          163 LKAGEEITPELANILNALGIQPLEVGLDLLAVYED--GIIYTPDVLAIDESEYI  214 (339)
T ss_dssp             ECTTSBCCHHHHHHHHHHTCCCSCCSCEEEEEEET--TEEECHHHHCCCHHHHH
T ss_pred             EecCCCcCHHHHHHHHHcCCCcEEeeeeEEEEEeC--CcEecHHhCCCCHHHHH
Confidence            99999999999999999999999999999999994  78995   666665543

>3u5i_q A0, L10E, 60S acidic ribosomal protein P0; translation, ribosome, ribosomal R ribosomal protein, STM1; 3.00A {Saccharomyces cerevisiae} PDB: 4b6a_q 3izc_s 3izs_s 3j16_G* 3o5h_M 3jyw_8

Probab=100.00  E-value=5.2e-59  Score=423.55  Aligned_cols=203  Identities=20%  Similarity=0.318  Sum_probs=116.4

Q ss_pred             chHHHHHHHHHHHHHHhhCCeEEEEEeCCCCcHHHHHHHHhhC-CceEEEEehHHHHHHhhccchhhhhhchhhhhhhcc
Q psy15723         19 GLERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDWK-DSRFFFGKNKVMAYALGKSQEDEIEKNIHVVSSALK   97 (243)
Q Consensus        19 ~~e~K~~~v~~l~e~l~~y~~v~v~~~~~l~~~ql~~lR~~lr-~s~~~vgKNtLmk~AL~~~~e~e~~~~l~~L~~~L~   97 (243)
                      ++++|.++|++|++++++|+++||++|+||+++|+++||+.|| .++++|+|||||++||+++.++  .+++++|.++|+
T Consensus         4 ~re~K~~~v~el~e~l~~~~~v~vv~~~gl~v~ql~~LR~~lR~~~~~~V~KNTL~r~Al~~~~~~--~~~le~L~~~L~   81 (312)
T 3u5i_q            4 IREKKAEYFAKLREYLEEYKSLFVVGVDNVSSQQMHEVRKELRGRAVVLMGKNTMVRRAIRGFLSD--LPDFEKLLPFVK   81 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHCSEEEEEECSSCCHHHHHHHHHHHSSSCEEEECCHHHHHHHHHTTSSS--SCGGGGTGGGCC
T ss_pred             cHHHHHHHHHHHHHHHHhCCEEEEEecCCCCHHHHHHHHHHHhcCceEEEeehHHHHHHHhhCccc--ccChHHHHHhcc
Confidence            5799999999999999999999999999999999999999999 4899999999999999997643  468999999999


Q ss_pred             CceEEEEecCCHHHHHHHHhhcCcccccccCCCccceEEEcCCCCCCCCCCChhHhhhcCceeeecCceEEEccCeeEee
Q psy15723         98 GQCGLLFTNRSKDDVLMWFDVYEDEDFAKSGFISTEDVELKEGPLPEFPHSIEPQLRQLGLQTNLNKGVVTLFKDHTVCK  177 (243)
Q Consensus        98 G~~allFTn~dp~~v~k~l~~~~~~~~Ak~G~iA~~dvvI~~G~t~~~p~~~~~~~~kLgiptki~kG~I~i~~d~~v~k  177 (243)
                      ||+||+||++||.+++++|.+|++++|||+|++||+||+||+|||++.|+ +.++||+|||||+|++|+|+|.+|++||+
T Consensus        82 G~~gl~Ft~~dp~~v~k~l~~~k~~~pAr~GaiAp~dV~Ip~G~tg~~P~-~~s~fq~Lgiptki~kG~I~I~~d~~v~k  160 (312)
T 3u5i_q           82 GNVGFVFTNEPLTEIKNVIVSNRVAAPARAGAVAPEDIWVRAVNTGMEPG-KTSFFQALGVPTKIARGTIEIVSDVKVVD  160 (312)
T ss_dssp             SSEEEEEESSCHHHHHHHHHTSSCCC------------------------------------------------------
T ss_pred             CCEEEEEECCCHHHHHHHHHhccCcccccCCCcCCceEEECCCCCCCCCc-chHHHHHcCCCeEeeCCEEEEccceEEEe
Confidence            99999999999999999999999999999999999999999999997776 58999999999999999999999999999


Q ss_pred             cCcccCHHHHHHHHHcCcCceeeEEEEEEEEeCCCceEEE---ccCCcCCcc
Q psy15723        178 KGDVLTPEQARILKLLKKKMAKFKVLLYLWYNKKEGTFEN---LLDREKTPM  226 (243)
Q Consensus       178 ~Ge~vs~~qA~lL~~lgikp~~~~l~l~~~~~~~~g~~~~---~~~~~~~~~  226 (243)
                      +||+||++||+||++|||+|++|+|.|.++||+  |.+|.   |+++++++.
T Consensus       161 ~G~~v~~~~A~lL~~l~i~p~~~~l~l~~~~d~--g~i~~~~~L~i~~e~~~  210 (312)
T 3u5i_q          161 AGNKVGQSEASLLNLLNISPFTFGLTVVQVYDN--GQVFPXXXXXXXXXXXX  210 (312)
T ss_dssp             -----------------------CCEEEEEEES--SCCCCSTTTSCCSSTTT
T ss_pred             CCCCcCHHHHHHHHHcCcCcEEEEEEEEEEecC--Cceeccccccccccccc
Confidence            999999999999999999999999999999995  67885   556665543

>1vq8_G Acidic ribosomal protein P0 homolog; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: j.84.1.1 PDB: 1k73_I* 1k8a_I* 1k9m_I* 1kc8_I* 1kd1_I* 1kqs_G* 1m1k_I* 1m90_I* 1n8r_I* 1nji_I* 1q7y_I* 1q81_I* 1q82_I* 1q86_I* 1qvf_G 1qvg_G 1s72_G* 1vq4_G* 1vq5_G* 1vq6_G* ...

Probab=100.00  E-value=7e-59  Score=427.56  Aligned_cols=205  Identities=19%  Similarity=0.287  Sum_probs=28.6

Q ss_pred             cccCchHHHHHHHHHHHHHHhhCCeEEEEEeCCCCcHHHHHHHHhhC-CceEEEEehHHHHHHhhccchhhhhhchhhhh
Q psy15723         15 TVKKGLERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDWK-DSRFFFGKNKVMAYALGKSQEDEIEKNIHVVS   93 (243)
Q Consensus        15 ~~Kk~~e~K~~~v~~l~e~l~~y~~v~v~~~~~l~~~ql~~lR~~lr-~s~~~vgKNtLmk~AL~~~~e~e~~~~l~~L~   93 (243)
                      +.++.++||.++|++|++++++|+++||++|+||+++|+++||+.|| .++|+|+|||||++||++++.     +++.|.
T Consensus         8 ~~k~~~e~K~~~V~eL~e~l~~~~~v~vvdy~GLtv~ql~~LR~~lR~~~~~~V~KNTL~r~Al~~~~~-----~le~L~   82 (348)
T 1vq8_G            8 KTETIPEWKQEEVDAIVEMIESYESVGVVNIAGIPSRQLQDMRRDLHGTAELRVSRNTLLERALDDVDD-----GLEDLN   82 (348)
T ss_dssp             ----CCHHHHHHHHHHHHHHHC---------------------------------CHHHHHHHHTC--------------
T ss_pred             cccccHHHHHHHHHHHHHHHHhCCEEEEEECCCCCHHHHHHHHHHHHhcceEEEeHHHHHHHHHHhCCc-----chHHHH
Confidence            34678999999999999999999999999999999999999999999 589999999999999999842     589999


Q ss_pred             hhccCceEEEEecCCHHHHHHHHhhcCcccccccCCCccceEEEcCCCCCCCCCCChhHhhhcCceeeecCceEEEccCe
Q psy15723         94 SALKGQCGLLFTNRSKDDVLMWFDVYEDEDFAKSGFISTEDVELKEGPLPEFPHSIEPQLRQLGLQTNLNKGVVTLFKDH  173 (243)
Q Consensus        94 ~~L~G~~allFTn~dp~~v~k~l~~~~~~~~Ak~G~iA~~dvvI~~G~t~~~p~~~~~~~~kLgiptki~kG~I~i~~d~  173 (243)
                      ++|+|++||+||++||.+++++|.+|++++|||+|.+||++|+||+|||++.||+|+|+||+|||||+|++|+|+|.+|+
T Consensus        83 ~~LkG~tal~Ft~~Dp~~vaK~l~~f~~~~pAr~GaiAp~dV~IpaG~t~~~P~~~~~~fq~LgIPTkI~kG~I~I~~d~  162 (348)
T 1vq8_G           83 GYITGQVGLIGTDDNPFSLFQELEASKTPAPIGAGEVAPNDIVIPEGDTGVDPGPFVGELQSVGADARIQEGSIQVLSDS  162 (348)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HhccCCEEEEEeCCCHHHHHHHHHHhcccchhhcCCcCCceEEeCCCCCCCCCCchHHHHHHcCCCEEeccCceEecCce
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEeecCcccCHHHHHHHHHcCcCceeeEEEEEEEEeCCCceEEE---ccCCcCCcc
Q psy15723        174 TVCKKGDVLTPEQARILKLLKKKMAKFKVLLYLWYNKKEGTFEN---LLDREKTPM  226 (243)
Q Consensus       174 ~v~k~Ge~vs~~qA~lL~~lgikp~~~~l~l~~~~~~~~g~~~~---~~~~~~~~~  226 (243)
                      +||++|++||++||+||++|||+|++|+|.|+++||+  |.+|.   |+++++++.
T Consensus       163 ~v~k~G~~v~~~~A~LL~~LgI~p~~f~l~l~~~~d~--g~~~~~~vL~i~~e~~~  216 (348)
T 1vq8_G          163 TVLDTGEEVSQELSNVLNELGIEPKEVGLDLRAVFAD--GVLFEPEELELDIDEYR  216 (348)
T ss_dssp             --------------------------------------------------------
T ss_pred             EEeeCCCCcCHHHHHHHHHcCCCceeeeeeeEEEEeC--CcccCHHHccCCHHHHH
Confidence            9999999999999999999999999999999999985  67776   555555443

>2zkr_g 60S acidic ribosomal protein P0; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}

Probab=100.00  E-value=2.9e-59  Score=426.01  Aligned_cols=205  Identities=19%  Similarity=0.329  Sum_probs=0.0

Q ss_pred             cCchHHHHHHHHHHHHHHhhCCeEEEEEeCCCCcHHHHHHHHhhC-CceEEEEehHHHHHHhhccchhhhhhchhhhhhh
Q psy15723         17 KKGLERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDWK-DSRFFFGKNKVMAYALGKSQEDEIEKNIHVVSSA   95 (243)
Q Consensus        17 Kk~~e~K~~~v~~l~e~l~~y~~v~v~~~~~l~~~ql~~lR~~lr-~s~~~vgKNtLmk~AL~~~~e~e~~~~l~~L~~~   95 (243)
                      ...++||.++|++|++++++|+++||++|+||+++|+++||+.|| .++|+|+|||||++||+++.+  +.+++++|.++
T Consensus         4 ~~~~e~K~~~V~eL~e~l~~~~~v~vvd~~gl~v~ql~~LR~~lR~~~~~~V~KNTL~r~Al~~~~~--~~~~~e~L~~~   81 (317)
T 2zkr_g            4 EDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLE--NNPALEKLLPH   81 (317)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cchHHHHHHHHHHHHHHHHhCCEEEEEECCCCCHHHHHHHHHHHhcCcEEEEEeHHHHHHHHhhCcc--cccchhhhhhc
Confidence            346789999999999999999999999999999999999999999 689999999999999999864  46789999999


Q ss_pred             ccCceEEEEecCCHHHHHHHHhhcCcccccccCCCccceEEEcCCCCCCCCCCChhHhhhcCceeeecCceEEEccCeeE
Q psy15723         96 LKGQCGLLFTNRSKDDVLMWFDVYEDEDFAKSGFISTEDVELKEGPLPEFPHSIEPQLRQLGLQTNLNKGVVTLFKDHTV  175 (243)
Q Consensus        96 L~G~~allFTn~dp~~v~k~l~~~~~~~~Ak~G~iA~~dvvI~~G~t~~~p~~~~~~~~kLgiptki~kG~I~i~~d~~v  175 (243)
                      |+|++||+||++||.+++++|.+|++++|||+|.+||+||+||+|||++.| +++++||+|||||+|++|+|+|.+|++|
T Consensus        82 L~G~~al~Ft~~Dp~~vaK~l~~f~~~~pAr~GaiAp~dV~Ip~G~t~~~p-~~~~~fq~LgipTkI~kG~I~i~~d~~v  160 (317)
T 2zkr_g           82 IRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGP-EKTSFFQALGITTKISRGTIEILSDVQL  160 (317)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cCCCEEEEEECCCHHHHHHHHHHhCccchhccCCcCCceEEeCCCCCCCCC-cchHHHHHcCCCeEeeCCeEEEecceEE
Confidence            999999999999999999999999999999999999999999999998655 5699999999999999999999999999


Q ss_pred             eecCcccCHHHHHHHHHcCcCceeeEEEEEEEEeCCCceEEE---ccCCcCCcc
Q psy15723        176 CKKGDVLTPEQARILKLLKKKMAKFKVLLYLWYNKKEGTFEN---LLDREKTPM  226 (243)
Q Consensus       176 ~k~Ge~vs~~qA~lL~~lgikp~~~~l~l~~~~~~~~g~~~~---~~~~~~~~~  226 (243)
                      |++||+||++||+||++|||+|++|+|.|+++||+  |.+|.   |+++++++.
T Consensus       161 ~k~G~~v~~~~A~lL~~l~i~p~~~~l~l~~~~d~--g~~~~~~~L~i~~e~~~  212 (317)
T 2zkr_g          161 IKTGDKVGASEATLLNMLNISPFSFGLVIQQVFDN--GSIYNPEVLDITEETLH  212 (317)
T ss_dssp             ------------------------------------------------------
T ss_pred             ecCCCCcCHHHHHHHHHcCCCceeeeeeeeEEEec--CcccchHhccCCHHHHH
Confidence            99999999999999999999999999999999985  67775   566665554

>3a1y_G Acidic ribosomal protein P0; stalk, helix SPIN, ribonucleoprotein; 2.13A {Pyrococcus horikoshii}

Probab=100.00  E-value=7e-57  Score=405.37  Aligned_cols=207  Identities=25%  Similarity=0.334  Sum_probs=124.3

Q ss_pred             cCchHHHHHHHHHHHHHHhhCCeEEEEEeCCCCcHHHHHHHHhhC--CceEEEEehHHHHHHhhccchhhhhhchhhhhh
Q psy15723         17 KKGLERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDWK--DSRFFFGKNKVMAYALGKSQEDEIEKNIHVVSS   94 (243)
Q Consensus        17 Kk~~e~K~~~v~~l~e~l~~y~~v~v~~~~~l~~~ql~~lR~~lr--~s~~~vgKNtLmk~AL~~~~e~e~~~~l~~L~~   94 (243)
                      ++.++||.++|++|++++++|++++|++|+||+++|+++||+.||  |++|+|+|||||++||+++.++++++++++|.+
T Consensus         2 ~~~~e~K~~~v~el~~~l~~~~~v~v~~~~gl~~~ql~~lR~~lr~~g~~~~v~KNtL~~~Al~~~~~~~~~~~~~~L~~   81 (284)
T 3a1y_G            2 AHVAEWKKKEVEELAKLIKSYPVIALVDVSSMPAYPLSQMRRLIRENGGLLRVSRNTLIELAIKKAAKELGKPELEKLVE   81 (284)
T ss_dssp             CSSCCCTTTHHHHHHHHHTTCSEEEEEECTTCCHHHHHHHHHHHHHTTEEEEECSSSSCCHHHHHHHTTCSCSSTTSSSC
T ss_pred             CCcHHHHHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHHhcCcEEEEeHHHHHHHHHhhCccccccccHHHHhh
Confidence            567899999999999999999999999999999999999999999  499999999999999999988888899999999


Q ss_pred             hccCceEEEEecCCHHHHHHHHhhcCcccccccCCCccceEEEcCCCCCCCCCCChhHhhhcCceeeecCceEEEccCee
Q psy15723         95 ALKGQCGLLFTNRSKDDVLMWFDVYEDEDFAKSGFISTEDVELKEGPLPEFPHSIEPQLRQLGLQTNLNKGVVTLFKDHT  174 (243)
Q Consensus        95 ~L~G~~allFTn~dp~~v~k~l~~~~~~~~Ak~G~iA~~dvvI~~G~t~~~p~~~~~~~~kLgiptki~kG~I~i~~d~~  174 (243)
                      +|+|++|++||++||.+++++|.+|+.++|||+|.+|+++|+||+|+++..||+|+|+||+|||||+|++|+|+|.+|++
T Consensus        82 ~l~G~~al~Ft~~dp~~vak~l~~f~~~~~ar~Gaia~~dv~ip~g~~~~~p~~~~~~l~~LgIptki~~g~I~i~~d~~  161 (284)
T 3a1y_G           82 YIDRGAGILVTNMNPFKLYKFLQQNRQPAPAKPGAVVPKDVVVPAGPTPLAPGPIVGQMQALGIPARIEKGKVTIQKDTT  161 (284)
T ss_dssp             CCCTTEEEEEESSCHHHHHHHHHHCCCC----------------------------------------------------
T ss_pred             hcCCCEEEEEECCCHHHHHHHHHHhcchhhhhcCCccceeEEecCCCCCCCCcchHHHHHHCCCCeEEecCeeEeecceE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeecCcccCHHHHHHHHHcCcCceeeEEEEEEEEeCCCceEEEc---cCCcCCc
Q psy15723        175 VCKKGDVLTPEQARILKLLKKKMAKFKVLLYLWYNKKEGTFENL---LDREKTP  225 (243)
Q Consensus       175 v~k~Ge~vs~~qA~lL~~lgikp~~~~l~l~~~~~~~~g~~~~~---~~~~~~~  225 (243)
                      ||++|++|+++||+||++|||+|++|++.+.++||+  |.++..   +++++++
T Consensus       162 v~~~G~~l~~~~a~lL~~L~i~~~~~~l~i~~~~~~--~~~~~~~vl~i~~e~~  213 (284)
T 3a1y_G          162 VLKAGEVITPELANILNALGIQPLEVGLDVLAVYED--GIVYTPDVLAIDEQEY  213 (284)
T ss_dssp             ---------------------CCCCCCCEEEEEEET--TEEECHHHHSCCHHHH
T ss_pred             EEecCCCcCHHHHHHHHHcCCCHHHHHHHHHHHhhc--cccCCHHHccCCHHHH
Confidence            999999999999999999999999999999999985  678864   4444443

>1zav_A 50S ribosomal protein L10; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: d.58.62.1 PDB: 1zaw_A 1zax_A

Probab=99.88  E-value=3.7e-23  Score=174.40  Aligned_cols=110  Identities=18%  Similarity=0.250  Sum_probs=98.1

Q ss_pred             chHHHHHHHHHHHHHHhhCCeEEEEEeCCCCcHHHHHHHHhhC-----CceEEEEehHHHHHHhhccchhhhhhchhhhh
Q psy15723         19 GLERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDWK-----DSRFFFGKNKVMAYALGKSQEDEIEKNIHVVS   93 (243)
Q Consensus        19 ~~e~K~~~v~~l~e~l~~y~~v~v~~~~~l~~~ql~~lR~~lr-----~s~~~vgKNtLmk~AL~~~~e~e~~~~l~~L~   93 (243)
                      ++++|.++|++|++.+++|+.++|++|+|++++|+++||++||     |++|+|+|||||++|++++       +++.|.
T Consensus         4 ~~~~K~~~v~el~~~l~~~~~v~v~~~~gltv~q~~~LR~~lr~~~~~g~~~~V~KNtL~~~Al~~~-------~~~~L~   76 (180)
T 1zav_A            4 TRQQKELIVKEMSEIFKKTSLILFADFLGFTVADLTELRSRLREKYGDGARFRVVKNTLLNLALKNA-------EYEGYE   76 (180)
T ss_dssp             CHHHHHHHHHHHHHHHTTCSEEEEECCTTCCHHHHHHHHHHHHHHHTTSEEEEEECHHHHHHHHHHT-------TCCSCG
T ss_pred             CHHHHHHHHHHHHHHHHhCCEEEEEEeCCCCHHHHHHHHHHHHhcccCCeEEEEehHHHHHHHHccC-------ChhhHH
Confidence            4789999999999999999999999999999999999999998     4899999999999999987       589999


Q ss_pred             hhccCceEEEEec-CCHHHHHHHHhhcCcccccccCCCccceEEEcCCCC
Q psy15723         94 SALKGQCGLLFTN-RSKDDVLMWFDVYEDEDFAKSGFISTEDVELKEGPL  142 (243)
Q Consensus        94 ~~L~G~~allFTn-~dp~~v~k~l~~~~~~~~Ak~G~iA~~dvvI~~G~t  142 (243)
                      ++|+||+|++||+ +||.+++++|.+|.+..     .  +..++|++|.+
T Consensus        77 ~~l~G~~a~~fs~~~dp~~~ak~l~~f~k~~-----~--~~~l~ikgg~~  119 (180)
T 1zav_A           77 EFLKGPTAVLYVTEGDPVEAVKIIYNFYKDK-----K--ADLSRLKGGFL  119 (180)
T ss_dssp             GGCSSSEEEEEESSSCTHHHHHHHHHHHHHT-----T--CCGGGEEEEEE
T ss_pred             HhCcCCEEEEEecCCCHHHHHHHHHHHHHhC-----C--CCCeEEEEEEE
Confidence            9999999999999 99999999999775432     1  24466666655

>3sgf_H 50S ribosomal protein L10; typeii release factor binding with ribosome, ribosome-antibi complex; 3.20A {Escherichia coli} PDB: 3uos_H 3j12_J* 3j0w_J* 3j0y_J* 3j11_J* 3j0t_J* 3j14_J*

Probab=99.83  E-value=9.8e-23  Score=169.75  Aligned_cols=97  Identities=12%  Similarity=0.190  Sum_probs=92.1

Q ss_pred             chHHHHHHHHHHHHHHhhCCeEEEEEeCCCCcHHHHHHHHhhC--CceEEEEehHHHHHHhhccchhhhhhchhhhhhhc
Q psy15723         19 GLERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDWK--DSRFFFGKNKVMAYALGKSQEDEIEKNIHVVSSAL   96 (243)
Q Consensus        19 ~~e~K~~~v~~l~e~l~~y~~v~v~~~~~l~~~ql~~lR~~lr--~s~~~vgKNtLmk~AL~~~~e~e~~~~l~~L~~~L   96 (243)
                      +|++|.++|++|++.+++|+.++++||+|++++|+++||+.||  |+.++|+|||||++|++++       +++.|.++|
T Consensus         4 ~r~~K~~~V~el~~~l~~~~~v~v~~~~gltv~q~~~LR~~lr~~g~~~~V~KNtL~~~Al~~~-------~~~~L~~~l   76 (165)
T 3sgf_H            4 NLQDKQAIVAEVSEVAKGALSAVVADSRGVTVDKMTELRKAGREAGVYMRVVRNTLLRRAVEGT-------PFECLKDAF   76 (165)
T ss_dssp             HHHHHHHHHHHHHHHHSCSCEEECCCTTCCHHHHHHHTTTTTSSCCSSEECCCCTTTTTTTTTC-------TTTCTTCST
T ss_pred             CHHHHHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHHHcCcEEEEECcHHHHHHHhcC-------CcchhHHhC
Confidence            5799999999999999999999999999999999999999999  5899999999999999986       599999999


Q ss_pred             cCceEEEEecCCHHHHHHHHhhcCcc
Q psy15723         97 KGQCGLLFTNRSKDDVLMWFDVYEDE  122 (243)
Q Consensus        97 ~G~~allFTn~dp~~v~k~l~~~~~~  122 (243)
                      +||+|++||++||.++++++.+|.+.
T Consensus        77 ~G~tai~fs~~dp~~~aK~l~~f~K~  102 (165)
T 3sgf_H           77 VGPTLIAYSMEHPGAAARLFKEFAKA  102 (165)
T ss_dssp             TCCSCCCEEEECSSCSHHHHHHHHHH
T ss_pred             cCCEEEEEeCCCHHHHHHHHHHHHHh
Confidence            99999999999999999999988653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	243
d1zava1	177	Ribosomal protein L10 {Thermotoga maritima [TaxId:	99.72

>d1zava1 d.58.62.1 (A:1-177) Ribosomal protein L10 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Ribosomal protein L10-like
family: Ribosomal protein L10-like
domain: Ribosomal protein L10
species: Thermotoga maritima [TaxId: 2336]

Probab=99.72  E-value=7.7e-18  Score=139.36  Aligned_cols=97  Identities=16%  Similarity=0.236  Sum_probs=90.0

Q ss_pred             CchHHHHHHHHHHHHHHhhCCeEEEEEeCCCCcHHHHHHHHhhC-----CceEEEEehHHHHHHhhccchhhhhhchhhh
Q psy15723         18 KGLERKQNLRDELVKAVEKYNNIFVFSVQNMRNSKLKDVRNDWK-----DSRFFFGKNKVMAYALGKSQEDEIEKNIHVV   92 (243)
Q Consensus        18 k~~e~K~~~v~~l~e~l~~y~~v~v~~~~~l~~~ql~~lR~~lr-----~s~~~vgKNtLmk~AL~~~~e~e~~~~l~~L   92 (243)
                      .+|++|+.+|+++++.|++++.+++++|+|++++++++||++||     |++++|+||||+++|++++       +++.+
T Consensus         2 m~r~~K~~~v~~l~~~l~~s~~vv~~~y~gLtv~e~~~LR~~lre~~~~g~~~kV~KNtL~k~Al~~t-------~~~~l   74 (177)
T d1zava1           2 LTRQQKELIVKEMSEIFKKTSLILFADFLGFTVADLTELRSRLREKYGDGARFRVVKNTLLNLALKNA-------EYEGY   74 (177)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCSEEEEECCTTCCHHHHHHHHHHHHHHHTTSEEEEEECHHHHHHHHHHT-------TCCSC
T ss_pred             CCHHHHHHHHHHHHHHHHhCCEEEEEecCCCCHHHHHHHHHHHHHhccCCeEEEEechHHHHHHHhcC-------Ccchh
Confidence            36899999999999999999999999999999999999999996     6899999999999999988       47889


Q ss_pred             hhhccCceEEEEe-cCCHHHHHHHHhhcCc
Q psy15723         93 SSALKGQCGLLFT-NRSKDDVLMWFDVYED  121 (243)
Q Consensus        93 ~~~L~G~~allFT-n~dp~~v~k~l~~~~~  121 (243)
                      .++|.|+++++|+ .+||.+++|++.+|..
T Consensus        75 ~~~l~g~~a~~~~~~~d~~~~aK~l~~f~k  104 (177)
T d1zava1          75 EEFLKGPTAVLYVTEGDPVEAVKIIYNFYK  104 (177)
T ss_dssp             GGGCSSSEEEEEESSSCTHHHHHHHHHHHH
T ss_pred             hHHHhhccceeeeecCCchhhhhHHHHHhh
Confidence            9999999999996 6799999999998864