Psyllid ID: psy15739

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-----
Protein Sequence
MMVLGQEPRQTTSNLGHLQKHSVQALIHGLNRHYYSISINYRKNELEQKMLLNLHKKTWMDGLSLQDYNEHCKLNEGTVNDMLELAKHYNKGKTP
Secondary Structure (PSIPRED)
ccccccccccccccccccccccHHHHHHHccccEEEEEEEEEccHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccEcccccccccccccccccccHHHHHHcccccEEEEEEEccccHHHHHHHHHHHHccHHcccccccHHHHHHHHHHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
mmvlgqeprqttsnlghlqKHSVQALIHGLNRHYYSISINYRKNELEQKMLLNLHKktwmdglslqdynehcklnegtVNDMLELAKHYNKGKTP
Flexible Loop (DISEMBL)
mmvlgqeprqttsnlghlQKHSVQALIHGLNRHYYSISINYRKNELEQKMLLNLHKKTWMDGLSLQDYNEHCKLNEGTVNDMLELAKHYNKGKTP
Low Complexity Region (SEG)
MMVLGQEPRQTTSNLGHLQKHSVQALIHGLNRHYYSISINYRKNELEQKMLLNLHKKTWMDGLSLQDYNEHCKLNEGTVNDMLELAKHYNKGKTP
Disordered region (IsUnstruct)
*******************KHSVQALIHGLNRHYYSISINYRKNELEQKMLLNLHKKTWMDGLSLQDYNEHCKLNEGTVNDMLEL**********
Disordered Region (DISOPRED)
************SNLGHLQKHSVQALIHGLNRHYYSISINYRKNELEQKMLLNLHKKTWMDGLSLQ****************LELAKHYNK****
Disordered Region (DISEMBL)
**************LGHLQKHSVQALIHGLNRHYYSISINYRKNELEQKMLLNLHKKTWMDGLSLQDYNEHCKLNEGTVNDMLELAKHYNKGKTP
Disordered Region (DISPRO)
*************NLGHLQKHSVQALIHGLNRHYYSISINYRKNELEQKMLLNLHKKTWMDGLSLQDYNEHCKLNEGTVNDMLELAKHYNK****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MMVLGQEPRQTTSNLGHLQKHSVQALIHGLNRHYYSISINYRKNELEQKMLLNLHKKTWMDGLSLQDYNEHCKLNEGTVNDMLELAKHYNKGKTP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	95	2.2.26 [Sep-21-2011]
Q9V3H2	308	26S proteasome non-ATPase	yes	N/A	0.957	0.295	0.857	2e-41
O35593	310	26S proteasome non-ATPase	yes	N/A	0.968	0.296	0.826	4e-40
O00487	310	26S proteasome non-ATPase	yes	N/A	0.968	0.296	0.826	4e-40
Q9LT08	308	26S proteasome non-ATPase	yes	N/A	0.957	0.295	0.736	3e-34
Q86IJ1	306	26S proteasome non-ATPase	yes	N/A	0.905	0.281	0.674	1e-28
O76577	312	26S proteasome non-ATPase	yes	N/A	0.957	0.291	0.637	2e-27
P41878	308	26S proteasome regulatory	yes	N/A	0.947	0.292	0.555	8e-25
Q6FKS1	306	26S proteasome regulatory	yes	N/A	0.905	0.281	0.558	4e-21
P43588	306	26S proteasome regulatory	yes	N/A	0.894	0.277	0.541	1e-20
Q750E9	311	26S proteasome regulatory	yes	N/A	0.947	0.289	0.5	5e-20

>sp|Q9V3H2|PSDE_DROME 26S proteasome non-ATPase regulatory subunit 14 OS=Drosophila melanogaster GN=Rpn11 PE=1 SV=1

 Score =  167 bits (422), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 78/91 (85%), Positives = 85/91 (93%)

Query: 1   MMVLGQEPRQTTSNLGHLQKHSVQALIHGLNRHYYSISINYRKNELEQKMLLNLHKKTWM 60
           M+VLGQEPRQTTSNLGHLQK SVQALIHGLNRHYYSISINYRKNELEQKMLLNLHKK+W 
Sbjct: 165 MLVLGQEPRQTTSNLGHLQKPSVQALIHGLNRHYYSISINYRKNELEQKMLLNLHKKSWK 224

Query: 61  DGLSLQDYNEHCKLNEGTVNDMLELAKHYNK 91
           DGL+L DYNEHC +NE TV +ML+LAK+YNK
Sbjct: 225 DGLTLSDYNEHCSINEDTVAEMLDLAKNYNK 255

Metalloprotease component of the 26S proteasome that specifically cleaves 'Lys-63'-linked polyubiquitin chains. The 26S proteasome is involved in the ATP-dependent degradation of ubiquitinated proteins. The function of the 'Lys-63'-specific deubiquitination of the proteasome is unclear.
Drosophila melanogaster (taxid: 7227)
EC: 3EC: .EC: 4EC: .EC: 1EC: 9EC: .EC: -

>sp|O35593|PSDE_MOUSE 26S proteasome non-ATPase regulatory subunit 14 OS=Mus musculus GN=Psmd14 PE=1 SV=2

 Score =  162 bits (411), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 76/92 (82%), Positives = 84/92 (91%)

Query: 1   MMVLGQEPRQTTSNLGHLQKHSVQALIHGLNRHYYSISINYRKNELEQKMLLNLHKKTWM 60
           MMVLG EPRQTTSNLGHL K S+QALIHGLNRHYYSI+INYRKNELEQKMLLNLHKK+WM
Sbjct: 167 MMVLGHEPRQTTSNLGHLNKPSIQALIHGLNRHYYSITINYRKNELEQKMLLNLHKKSWM 226

Query: 61  DGLSLQDYNEHCKLNEGTVNDMLELAKHYNKG 92
           +GL+LQDY+EHCK NE  V +MLELAK+YNK 
Sbjct: 227 EGLTLQDYSEHCKHNESVVKEMLELAKNYNKA 258

Metalloprotease component of the 26S proteasome that specifically cleaves 'Lys-63'-linked polyubiquitin chains. The 26S proteasome is involved in the ATP-dependent degradation of ubiquitinated proteins. The function of the 'Lys-63'-specific deubiquitination of the proteasome is unclear.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: -

>sp|O00487|PSDE_HUMAN 26S proteasome non-ATPase regulatory subunit 14 OS=Homo sapiens GN=PSMD14 PE=1 SV=1

 Score =  162 bits (411), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 76/92 (82%), Positives = 84/92 (91%)

Query: 1   MMVLGQEPRQTTSNLGHLQKHSVQALIHGLNRHYYSISINYRKNELEQKMLLNLHKKTWM 60
           MMVLG EPRQTTSNLGHL K S+QALIHGLNRHYYSI+INYRKNELEQKMLLNLHKK+WM
Sbjct: 167 MMVLGHEPRQTTSNLGHLNKPSIQALIHGLNRHYYSITINYRKNELEQKMLLNLHKKSWM 226

Query: 61  DGLSLQDYNEHCKLNEGTVNDMLELAKHYNKG 92
           +GL+LQDY+EHCK NE  V +MLELAK+YNK 
Sbjct: 227 EGLTLQDYSEHCKHNESVVKEMLELAKNYNKA 258

Metalloprotease component of the 26S proteasome that specifically cleaves 'Lys-63'-linked polyubiquitin chains. The 26S proteasome is involved in the ATP-dependent degradation of ubiquitinated proteins. The function of the 'Lys-63'-specific deubiquitination of the proteasome is unclear.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: -

>sp|Q9LT08|PSDE_ARATH 26S proteasome non-ATPase regulatory subunit 14 OS=Arabidopsis thaliana GN=RPN11 PE=2 SV=1

 Score =  143 bits (361), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 67/91 (73%), Positives = 77/91 (84%)

Query: 2   MVLGQEPRQTTSNLGHLQKHSVQALIHGLNRHYYSISINYRKNELEQKMLLNLHKKTWMD 61
           ++LGQEPRQTTSNLGHL K S+QALIHGLNRHYYSI+INYRKNELE+KMLLNLHKK W D
Sbjct: 167 IMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTD 226

Query: 62  GLSLQDYNEHCKLNEGTVNDMLELAKHYNKG 92
           GL+L+ ++ H K NE TV +ML LA  YNK 
Sbjct: 227 GLTLRRFDTHSKTNEQTVQEMLSLAAKYNKA 257

Metalloprotease component of the 26S proteasome that specifically cleaves 'Lys-63'-linked polyubiquitin chains. The 26S proteasome is involved in the ATP-dependent degradation of ubiquitinated proteins. The function of the 'Lys-63'-specific deubiquitination of the proteasome is unclear.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: -

>sp|Q86IJ1|PSDE_DICDI 26S proteasome non-ATPase regulatory subunit 14 OS=Dictyostelium discoideum GN=psmD14 PE=3 SV=1

 Score =  124 bits (312), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 58/86 (67%), Positives = 69/86 (80%)

Query: 7   EPRQTTSNLGHLQKHSVQALIHGLNRHYYSISINYRKNELEQKMLLNLHKKTWMDGLSLQ 66
           EPRQ TSNLGHLQ  S+QALIHGLNR+YYSI+INYRKNELEQKMLLNLHKK W +GL + 
Sbjct: 170 EPRQITSNLGHLQDPSIQALIHGLNRNYYSIAINYRKNELEQKMLLNLHKKKWTEGLIVD 229

Query: 67  DYNEHCKLNEGTVNDMLELAKHYNKG 92
            ++ H + NE  +N++LEL K Y K 
Sbjct: 230 KFDTHEQSNEKQINNLLELTKQYQKS 255

Metalloprotease component of the 26S proteasome that specifically cleaves 'Lys-63'-linked polyubiquitin chains. The 26S proteasome is involved in the ATP-dependent degradation of ubiquitinated proteins. The function of the 'Lys-63'-specific deubiquitination of the proteasome is unclear.

Dictyostelium discoideum (taxid: 44689)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: -

>sp|O76577|PSDE_CAEEL 26S proteasome non-ATPase regulatory subunit 14 OS=Caenorhabditis elegans GN=rpn-11 PE=1 SV=1

 Score =  120 bits (301), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 58/91 (63%), Positives = 74/91 (81%)

Query: 2   MVLGQEPRQTTSNLGHLQKHSVQALIHGLNRHYYSISINYRKNELEQKMLLNLHKKTWMD 61
           M L QEPRQTTSNLGHLQK S+QALIHGLNRHYYSI I YR ++LEQKMLLNL+K +WMD
Sbjct: 170 MALNQEPRQTTSNLGHLQKPSIQALIHGLNRHYYSIPIAYRTHDLEQKMLLNLNKLSWMD 229

Query: 62  GLSLQDYNEHCKLNEGTVNDMLELAKHYNKG 92
            +S+++Y++  + N+  +  ML+LAK+Y K 
Sbjct: 230 AVSVENYSKCGEQNKEHLKAMLKLAKNYKKA 260

Metalloprotease component of the 26S proteasome that specifically cleaves 'Lys-63'-linked polyubiquitin chains. The 26S proteasome is involved in the ATP-dependent degradation of ubiquitinated proteins. The function of the 'Lys-63'-specific deubiquitination of the proteasome is unclear.

Caenorhabditis elegans (taxid: 6239)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: -

>sp|P41878|RPN11_SCHPO 26S proteasome regulatory subunit rpn11 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpn11 PE=1 SV=2

 Score =  112 bits (279), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 50/90 (55%), Positives = 69/90 (76%)

Query: 2   MVLGQEPRQTTSNLGHLQKHSVQALIHGLNRHYYSISINYRKNELEQKMLLNLHKKTWMD 61
           +++GQEPRQTTSNLGH+ K S+QALIHGL RHYYS+ INY+K ELE+ MLLNLHK+ W  
Sbjct: 167 LMMGQEPRQTTSNLGHINKPSIQALIHGLGRHYYSLRINYKKTELEEIMLLNLHKQPWAH 226

Query: 62  GLSLQDYNEHCKLNEGTVNDMLELAKHYNK 91
           GL L+++N   + N  +++ M  L++ Y +
Sbjct: 227 GLLLENFNSAAEKNHASIDKMKSLSEQYTE 256

Transcription factor pap1 is controlled by the functional interaction between the positive regulator pad1 and negative regulator crm1. Both these proteins are also essential for cell viability and for the maintenance of chromosome structure. Pad1 is also responsible for resistance to staurosporine, and other drugs such as cycloheximide and caffeine.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q6FKS1|RPN11_CANGA 26S proteasome regulatory subunit RPN11 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=RPN11 PE=3 SV=1

 Score = 99.8 bits (247), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 48/86 (55%), Positives = 60/86 (69%)

Query: 6   QEPRQTTSNLGHLQKHSVQALIHGLNRHYYSISINYRKNELEQKMLLNLHKKTWMDGLSL 65
           QEPRQTTSN G + K ++QALIHGLNRHYYS++I+Y K   E KMLLNLHK+ W  GL +
Sbjct: 168 QEPRQTTSNSGLMNKANIQALIHGLNRHYYSLNIDYHKTPAETKMLLNLHKEQWQSGLKM 227

Query: 66  QDYNEHCKLNEGTVNDMLELAKHYNK 91
           QDY E    N      M+ +A+ Y+K
Sbjct: 228 QDYQEKETENLEATKRMVAVAQQYSK 253

Acts as a regulatory subunit of the 26 proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.

Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) (taxid: 284593)

>sp|P43588|RPN11_YEAST 26S proteasome regulatory subunit RPN11 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPN11 PE=1 SV=1

 Score = 97.8 bits (242), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 46/85 (54%), Positives = 60/85 (70%)

Query: 7   EPRQTTSNLGHLQKHSVQALIHGLNRHYYSISINYRKNELEQKMLLNLHKKTWMDGLSLQ 66
           EPRQTTSN G L K ++QALIHGLNRHYYS++I+Y K   E KML+NLHK+ W  GL + 
Sbjct: 169 EPRQTTSNTGLLNKANIQALIHGLNRHYYSLNIDYHKTAKETKMLMNLHKEQWQSGLKMY 228

Query: 67  DYNEHCKLNEGTVNDMLELAKHYNK 91
           DY E  + N      M+++A+ Y+K
Sbjct: 229 DYEEKEESNLAATKSMVKIAEQYSK 253

Acts as a regulatory subunit of the 26 proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q750E9|RPN11_ASHGO 26S proteasome regulatory subunit RPN11 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=RPN11 PE=3 SV=1

 Score = 96.3 bits (238), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 45/90 (50%), Positives = 61/90 (67%)

Query: 2   MVLGQEPRQTTSNLGHLQKHSVQALIHGLNRHYYSISINYRKNELEQKMLLNLHKKTWMD 61
           +V  QEPRQTTSN+G L K ++Q+LIHGLNRHYYS++I+Y K   E  ML+NLHK+ W  
Sbjct: 169 VVRNQEPRQTTSNVGLLNKPNIQSLIHGLNRHYYSLNIDYHKTSAELNMLMNLHKEQWQS 228

Query: 62  GLSLQDYNEHCKLNEGTVNDMLELAKHYNK 91
           GL + DY E  ++N       + +A+ Y K
Sbjct: 229 GLKMHDYKEKERINLEATKKSVRIAEQYTK 258

Acts as a regulatory subunit of the 26 proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.

Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) (taxid: 284811)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	95
357609599	311	26S proteasome non-ATPase regulatory sub	0.968	0.295	0.880	1e-41
114052633	311	26S proteasome non-ATPase regulatory sub	0.968	0.295	0.880	1e-41
72030199	311	PREDICTED: 26S proteasome non-ATPase reg	0.968	0.295	0.869	4e-41
260832169	311	hypothetical protein BRAFLDRAFT_283521 [	0.968	0.295	0.869	4e-41
242007218	311	26S proteasome non-ATPase regulatory sub	0.968	0.295	0.880	7e-41
389609481	311	jun activation domain binding protein rp	0.968	0.295	0.869	1e-40
442749117	311	Putative 26s proteasome regulatory compl	0.957	0.292	0.857	1e-40
332374186	311	unknown [Dendroctonus ponderosae]	0.968	0.295	0.869	2e-40
289740403	308	26S proteasome regulatory complex subuni	0.968	0.298	0.858	2e-40
194761558	308	GF14156 [Drosophila ananassae] gi|190616	0.957	0.295	0.868	2e-40

>gi|357609599|gb|EHJ66532.1| 26S proteasome non-ATPase regulatory subunit 14 [Danaus plexippus]

 Score =  173 bits (439), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 81/92 (88%), Positives = 85/92 (92%)

Query: 1   MMVLGQEPRQTTSNLGHLQKHSVQALIHGLNRHYYSISINYRKNELEQKMLLNLHKKTWM 60
           MMVLGQEPRQTTSNLGHLQK SVQALIHGLNRHYYSISINYRKNELEQKMLLNLHKK+WM
Sbjct: 168 MMVLGQEPRQTTSNLGHLQKPSVQALIHGLNRHYYSISINYRKNELEQKMLLNLHKKSWM 227

Query: 61  DGLSLQDYNEHCKLNEGTVNDMLELAKHYNKG 92
           DGL+L DY EHC +NE TV DMLELAK+YNK 
Sbjct: 228 DGLTLADYKEHCAINETTVTDMLELAKNYNKA 259

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|114052633|ref|NP_001040263.1| 26S proteasome non-ATPase regulatory subunit 14 [Bombyx mori] gi|87248555|gb|ABD36330.1| 26S proteasome non-ATPase regulatory subunit 14 [Bombyx mori]

 Score =  173 bits (439), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 81/92 (88%), Positives = 85/92 (92%)

Query: 1   MMVLGQEPRQTTSNLGHLQKHSVQALIHGLNRHYYSISINYRKNELEQKMLLNLHKKTWM 60
           MMVLGQEPRQTTSNLGHLQK SVQALIHGLNRHYYSISINYRKNELEQKMLLNLHKK+WM
Sbjct: 168 MMVLGQEPRQTTSNLGHLQKPSVQALIHGLNRHYYSISINYRKNELEQKMLLNLHKKSWM 227

Query: 61  DGLSLQDYNEHCKLNEGTVNDMLELAKHYNKG 92
           DGL+L DY EHC +NE TV DMLELAK+YNK 
Sbjct: 228 DGLTLSDYKEHCSVNESTVTDMLELAKNYNKA 259

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|72030199|ref|XP_780027.1| PREDICTED: 26S proteasome non-ATPase regulatory subunit 14-like isoform 1 [Strongylocentrotus purpuratus]

 Score =  171 bits (434), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 80/92 (86%), Positives = 86/92 (93%)

Query: 1   MMVLGQEPRQTTSNLGHLQKHSVQALIHGLNRHYYSISINYRKNELEQKMLLNLHKKTWM 60
           MMVLGQEPRQTTSNLGHLQK S+QALIHGLNRHYYSI+INYRKNELEQKMLLNLHKK+WM
Sbjct: 168 MMVLGQEPRQTTSNLGHLQKPSIQALIHGLNRHYYSIAINYRKNELEQKMLLNLHKKSWM 227

Query: 61  DGLSLQDYNEHCKLNEGTVNDMLELAKHYNKG 92
           DGL+L+DYNEHCKLNE TV +ML LAK YNK 
Sbjct: 228 DGLTLKDYNEHCKLNESTVKEMLNLAKVYNKA 259

Source: Strongylocentrotus purpuratus

Species: Strongylocentrotus purpuratus

Genus: Strongylocentrotus

Family: Strongylocentrotidae

Order: Echinoida

Class: Echinoidea

Phylum: Echinodermata

Superkingdom: Eukaryota

>gi|260832169|ref|XP_002611030.1| hypothetical protein BRAFLDRAFT_283521 [Branchiostoma floridae] gi|229296400|gb|EEN67040.1| hypothetical protein BRAFLDRAFT_283521 [Branchiostoma floridae]

 Score =  171 bits (434), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 80/92 (86%), Positives = 87/92 (94%)

Query: 1   MMVLGQEPRQTTSNLGHLQKHSVQALIHGLNRHYYSISINYRKNELEQKMLLNLHKKTWM 60
           MMVLGQEPRQTTSNLGHLQK S+QALIHGLNRHYYSISINYRKNELEQKMLLNLHKK+WM
Sbjct: 168 MMVLGQEPRQTTSNLGHLQKPSIQALIHGLNRHYYSISINYRKNELEQKMLLNLHKKSWM 227

Query: 61  DGLSLQDYNEHCKLNEGTVNDMLELAKHYNKG 92
           +GL+LQDY+EHC LNE TV +MLELAK+YNK 
Sbjct: 228 EGLTLQDYSEHCSLNEKTVQEMLELAKNYNKA 259

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|242007218|ref|XP_002424439.1| 26S proteasome non-ATPase regulatory subunit, putative [Pediculus humanus corporis] gi|212507839|gb|EEB11701.1| 26S proteasome non-ATPase regulatory subunit, putative [Pediculus humanus corporis]

 Score =  171 bits (432), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 81/92 (88%), Positives = 85/92 (92%)

Query: 1   MMVLGQEPRQTTSNLGHLQKHSVQALIHGLNRHYYSISINYRKNELEQKMLLNLHKKTWM 60
           MMVLGQEPRQTTSNLGHLQK SVQALIHGLNRHYYSISINYRKNELEQKMLLNLHKK+WM
Sbjct: 168 MMVLGQEPRQTTSNLGHLQKPSVQALIHGLNRHYYSISINYRKNELEQKMLLNLHKKSWM 227

Query: 61  DGLSLQDYNEHCKLNEGTVNDMLELAKHYNKG 92
           DGL L DY EHCKLNE T +DML+LAK+YNK 
Sbjct: 228 DGLMLADYAEHCKLNETTCSDMLDLAKNYNKA 259

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|389609481|dbj|BAM18352.1| jun activation domain binding protein rpn11 [Papilio xuthus] gi|389611329|dbj|BAM19276.1| jun activation domain binding protein rpn11 [Papilio polytes]

 Score =  170 bits (430), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 80/92 (86%), Positives = 86/92 (93%)

Query: 1   MMVLGQEPRQTTSNLGHLQKHSVQALIHGLNRHYYSISINYRKNELEQKMLLNLHKKTWM 60
           MMVLGQEPRQTTSNLGHLQK SVQALIHGLNRHYYSISINYRKNELEQKMLLNLHKK+WM
Sbjct: 168 MMVLGQEPRQTTSNLGHLQKPSVQALIHGLNRHYYSISINYRKNELEQKMLLNLHKKSWM 227

Query: 61  DGLSLQDYNEHCKLNEGTVNDMLELAKHYNKG 92
           DGL+L DY EHC +NE TV++MLELAK+YNK 
Sbjct: 228 DGLTLLDYKEHCSVNETTVSEMLELAKNYNKA 259

Source: Papilio xuthus

Species: Papilio xuthus

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442749117|gb|JAA66718.1| Putative 26s proteasome regulatory complex subunit rpn11 [Ixodes ricinus]

 Score =  169 bits (429), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 78/91 (85%), Positives = 85/91 (93%)

Query: 1   MMVLGQEPRQTTSNLGHLQKHSVQALIHGLNRHYYSISINYRKNELEQKMLLNLHKKTWM 60
           MMVLGQEPRQTTSNLGHL K S+QALIHGLNRHYYSISINYRKNELEQKMLLNLHKK+W 
Sbjct: 168 MMVLGQEPRQTTSNLGHLTKPSIQALIHGLNRHYYSISINYRKNELEQKMLLNLHKKSWT 227

Query: 61  DGLSLQDYNEHCKLNEGTVNDMLELAKHYNK 91
           DGL+LQDY+EHCK+NE TV +ML+LAK YNK
Sbjct: 228 DGLTLQDYDEHCKVNEATVTEMLDLAKAYNK 258

Source: Ixodes ricinus

Species: Ixodes ricinus

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332374186|gb|AEE62234.1| unknown [Dendroctonus ponderosae]

 Score =  169 bits (428), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 80/92 (86%), Positives = 85/92 (92%)

Query: 1   MMVLGQEPRQTTSNLGHLQKHSVQALIHGLNRHYYSISINYRKNELEQKMLLNLHKKTWM 60
           MMVLGQEPRQTTSNLGHLQK SVQALIHGLNRHYYSISINYRKNELEQKMLLNLHKK+WM
Sbjct: 168 MMVLGQEPRQTTSNLGHLQKPSVQALIHGLNRHYYSISINYRKNELEQKMLLNLHKKSWM 227

Query: 61  DGLSLQDYNEHCKLNEGTVNDMLELAKHYNKG 92
           DGL+L DY+E+C  NE TV DMLELAK+YNK 
Sbjct: 228 DGLTLADYSENCSTNEKTVADMLELAKNYNKA 259

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|289740403|gb|ADD18949.1| 26S proteasome regulatory complex subunit RPN11 [Glossina morsitans morsitans]

 Score =  169 bits (428), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 79/92 (85%), Positives = 85/92 (92%)

Query: 1   MMVLGQEPRQTTSNLGHLQKHSVQALIHGLNRHYYSISINYRKNELEQKMLLNLHKKTWM 60
           M+VLGQEPRQTTSNLGHLQK SVQALIHGLNRHYYSISINYRKNELEQKMLLNLHKK+W 
Sbjct: 165 MLVLGQEPRQTTSNLGHLQKPSVQALIHGLNRHYYSISINYRKNELEQKMLLNLHKKSWK 224

Query: 61  DGLSLQDYNEHCKLNEGTVNDMLELAKHYNKG 92
           DGL+L DYNEHC +NE TV +MLELAK+YNK 
Sbjct: 225 DGLTLADYNEHCSINESTVQEMLELAKNYNKA 256

Source: Glossina morsitans morsitans

Species: Glossina morsitans

Genus: Glossina

Family: Glossinidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194761558|ref|XP_001962996.1| GF14156 [Drosophila ananassae] gi|190616693|gb|EDV32217.1| GF14156 [Drosophila ananassae]

 Score =  169 bits (427), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 79/91 (86%), Positives = 86/91 (94%)

Query: 1   MMVLGQEPRQTTSNLGHLQKHSVQALIHGLNRHYYSISINYRKNELEQKMLLNLHKKTWM 60
           M+VLGQEPRQTTSNLGHLQK SVQALIHGLNRHYYSISINYRKNELEQKMLLNLHKK+W 
Sbjct: 165 MLVLGQEPRQTTSNLGHLQKPSVQALIHGLNRHYYSISINYRKNELEQKMLLNLHKKSWK 224

Query: 61  DGLSLQDYNEHCKLNEGTVNDMLELAKHYNK 91
           DGL+L DYNEHC +NE TV++MLELAK+YNK
Sbjct: 225 DGLTLSDYNEHCSINEDTVSEMLELAKNYNK 255

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	95
FB|FBgn0028694	308	Rpn11 "Regulatory particle non	0.957	0.295	0.857	1.8e-39
UNIPROTKB|E1C6N0	300	PSMD14 "Uncharacterized protei	0.957	0.303	0.846	3.7e-39
ZFIN|ZDB-GENE-070410-56	310	psmd14 "proteasome (prosome, m	0.957	0.293	0.846	4.8e-39
UNIPROTKB|Q17QP9	310	PSMD14 "Proteasome (Prosome, m	0.957	0.293	0.835	1.3e-38
UNIPROTKB|O00487	310	PSMD14 "26S proteasome non-ATP	0.957	0.293	0.835	1.3e-38
UNIPROTKB|F1RPQ3	310	PSMD14 "Uncharacterized protei	0.957	0.293	0.835	1.3e-38
MGI|MGI:1913284	310	Psmd14 "proteasome (prosome, m	0.957	0.293	0.835	1.3e-38
RGD|1594532	310	Psmd14 "proteasome (prosome, m	0.957	0.293	0.835	1.3e-38
UNIPROTKB|F1LMW6	294	Psmd14 "Protein Psmd14" [Rattu	0.957	0.309	0.835	1.3e-38
TAIR|locus:2171696	308	AT5G23540 "AT5G23540" [Arabido	0.947	0.292	0.744	6.7e-33

FB|FBgn0028694 Rpn11 "Regulatory particle non-ATPase 11" [Drosophila melanogaster (taxid:7227)]

 Score = 421 (153.3 bits), Expect = 1.8e-39, P = 1.8e-39
 Identities = 78/91 (85%), Positives = 85/91 (93%)

Query:     1 MMVLGQEPRQTTSNLGHLQKHSVQALIHGLNRHYYSISINYRKNELEQKMLLNLHKKTWM 60
             M+VLGQEPRQTTSNLGHLQK SVQALIHGLNRHYYSISINYRKNELEQKMLLNLHKK+W 
Sbjct:   165 MLVLGQEPRQTTSNLGHLQKPSVQALIHGLNRHYYSISINYRKNELEQKMLLNLHKKSWK 224

Query:    61 DGLSLQDYNEHCKLNEGTVNDMLELAKHYNK 91
             DGL+L DYNEHC +NE TV +ML+LAK+YNK
Sbjct:   225 DGLTLSDYNEHCSINEDTVAEMLDLAKNYNK 255

GO:0008541 "proteasome regulatory particle, lid subcomplex" evidence=ISS;NAS

GO:0005838 "proteasome regulatory particle" evidence=ISS;IDA

GO:0004175 "endopeptidase activity" evidence=IDA

GO:0006508 "proteolysis" evidence=ISS;IMP;IDA

GO:0009987 "cellular process" evidence=IMP

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IMP

GO:0005875 "microtubule associated complex" evidence=IDA

UNIPROTKB|E1C6N0 PSMD14 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 418 (152.2 bits), Expect = 3.7e-39, P = 3.7e-39
 Identities = 77/91 (84%), Positives = 85/91 (93%)

Query:     1 MMVLGQEPRQTTSNLGHLQKHSVQALIHGLNRHYYSISINYRKNELEQKMLLNLHKKTWM 60
             MMVLG EPRQTTSNLGHL K S+QALIHGLNRHYYSI+INYRKNELEQKMLLNLHKK+WM
Sbjct:   157 MMVLGHEPRQTTSNLGHLNKPSIQALIHGLNRHYYSITINYRKNELEQKMLLNLHKKSWM 216

Query:    61 DGLSLQDYNEHCKLNEGTVNDMLELAKHYNK 91
             +GL+LQDY+EHCKLNE  V +MLELAK+YNK
Sbjct:   217 EGLTLQDYSEHCKLNETVVKEMLELAKNYNK 247

GO:0000724 "double-strand break repair via homologous recombination" evidence=IEA

GO:0006303 "double-strand break repair via nonhomologous end joining" evidence=IEA

GO:0008541 "proteasome regulatory particle, lid subcomplex" evidence=IEA

GO:0061133 "endopeptidase activator activity" evidence=IEA

GO:0061136 "regulation of proteasomal protein catabolic process" evidence=IEA

GO:0070628 "proteasome binding" evidence=IEA

ZFIN|ZDB-GENE-070410-56 psmd14 "proteasome (prosome, macropain) 26S subunit, non-ATPase, 14" [Danio rerio (taxid:7955)]

 Score = 417 (151.9 bits), Expect = 4.8e-39, P = 4.8e-39
 Identities = 77/91 (84%), Positives = 85/91 (93%)

Query:     1 MMVLGQEPRQTTSNLGHLQKHSVQALIHGLNRHYYSISINYRKNELEQKMLLNLHKKTWM 60
             MMVLG EPRQTTSNLGHL K S+QALIHGLNRHYYSI+INYRKNELEQKMLLNLHKK+WM
Sbjct:   167 MMVLGHEPRQTTSNLGHLNKPSIQALIHGLNRHYYSITINYRKNELEQKMLLNLHKKSWM 226

Query:    61 DGLSLQDYNEHCKLNEGTVNDMLELAKHYNK 91
             +GL+LQDY+EHCKLNE  V +MLELAK+YNK
Sbjct:   227 EGLTLQDYSEHCKLNETIVKEMLELAKNYNK 257

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q17QP9 PSMD14 "Proteasome (Prosome, macropain) 26S subunit, non-ATPase, 14" [Bos taurus (taxid:9913)]

 Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
 Identities = 76/91 (83%), Positives = 84/91 (92%)

Query:     1 MMVLGQEPRQTTSNLGHLQKHSVQALIHGLNRHYYSISINYRKNELEQKMLLNLHKKTWM 60
             MMVLG EPRQTTSNLGHL K S+QALIHGLNRHYYSI+INYRKNELEQKMLLNLHKK+WM
Sbjct:   167 MMVLGHEPRQTTSNLGHLNKPSIQALIHGLNRHYYSITINYRKNELEQKMLLNLHKKSWM 226

Query:    61 DGLSLQDYNEHCKLNEGTVNDMLELAKHYNK 91
             +GL+LQDY+EHCK NE  V +MLELAK+YNK
Sbjct:   227 EGLTLQDYSEHCKHNESVVKEMLELAKNYNK 257

GO:0004221 "ubiquitin thiolesterase activity" evidence=IDA

GO:0070628 "proteasome binding" evidence=IDA

GO:0061136 "regulation of proteasomal protein catabolic process" evidence=IEA

GO:0061133 "endopeptidase activator activity" evidence=IEA

GO:0008541 "proteasome regulatory particle, lid subcomplex" evidence=IEA

GO:0006303 "double-strand break repair via nonhomologous end joining" evidence=IEA

GO:0000724 "double-strand break repair via homologous recombination" evidence=IEA

UNIPROTKB|O00487 PSMD14 "26S proteasome non-ATPase regulatory subunit 14" [Homo sapiens (taxid:9606)]

 Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
 Identities = 76/91 (83%), Positives = 84/91 (92%)

Query:     1 MMVLGQEPRQTTSNLGHLQKHSVQALIHGLNRHYYSISINYRKNELEQKMLLNLHKKTWM 60
             MMVLG EPRQTTSNLGHL K S+QALIHGLNRHYYSI+INYRKNELEQKMLLNLHKK+WM
Sbjct:   167 MMVLGHEPRQTTSNLGHLNKPSIQALIHGLNRHYYSITINYRKNELEQKMLLNLHKKSWM 226

Query:    61 DGLSLQDYNEHCKLNEGTVNDMLELAKHYNK 91
             +GL+LQDY+EHCK NE  V +MLELAK+YNK
Sbjct:   227 EGLTLQDYSEHCKHNESVVKEMLELAKNYNK 257

GO:0046872 "metal ion binding" evidence=IEA

GO:0000502 "proteasome complex" evidence=TAS

GO:0004221 "ubiquitin thiolesterase activity" evidence=IMP;TAS

GO:0008237 "metallopeptidase activity" evidence=TAS

GO:0070536 "protein K63-linked deubiquitination" evidence=IMP;TAS

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=TAS

GO:0061133 "endopeptidase activator activity" evidence=IMP

GO:0061136 "regulation of proteasomal protein catabolic process" evidence=IMP

GO:0070628 "proteasome binding" evidence=IDA

GO:0008541 "proteasome regulatory particle, lid subcomplex" evidence=IMP

GO:0006303 "double-strand break repair via nonhomologous end joining" evidence=IMP

GO:0000724 "double-strand break repair via homologous recombination" evidence=IMP

GO:0022624 "proteasome accessory complex" evidence=ISS

GO:0000075 "cell cycle checkpoint" evidence=TAS

GO:0000082 "G1/S transition of mitotic cell cycle" evidence=TAS

GO:0000084 "S phase of mitotic cell cycle" evidence=TAS

GO:0000209 "protein polyubiquitination" evidence=TAS

GO:0000216 "M/G1 transition of mitotic cell cycle" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0002474 "antigen processing and presentation of peptide antigen via MHC class I" evidence=TAS

GO:0002479 "antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006521 "regulation of cellular amino acid metabolic process" evidence=TAS

GO:0006915 "apoptotic process" evidence=TAS

GO:0006977 "DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0031145 "anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=TAS

GO:0034641 "cellular nitrogen compound metabolic process" evidence=TAS

GO:0042590 "antigen processing and presentation of exogenous peptide antigen via MHC class I" evidence=TAS

GO:0042981 "regulation of apoptotic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0051436 "negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0051437 "positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0051439 "regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0010950 "positive regulation of endopeptidase activity" evidence=IMP

UNIPROTKB|F1RPQ3 PSMD14 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
 Identities = 76/91 (83%), Positives = 84/91 (92%)

Query:     1 MMVLGQEPRQTTSNLGHLQKHSVQALIHGLNRHYYSISINYRKNELEQKMLLNLHKKTWM 60
             MMVLG EPRQTTSNLGHL K S+QALIHGLNRHYYSI+INYRKNELEQKMLLNLHKK+WM
Sbjct:   167 MMVLGHEPRQTTSNLGHLNKPSIQALIHGLNRHYYSITINYRKNELEQKMLLNLHKKSWM 226

Query:    61 DGLSLQDYNEHCKLNEGTVNDMLELAKHYNK 91
             +GL+LQDY+EHCK NE  V +MLELAK+YNK
Sbjct:   227 EGLTLQDYSEHCKHNESVVKEMLELAKNYNK 257

GO:0070628 "proteasome binding" evidence=IEA

GO:0061136 "regulation of proteasomal protein catabolic process" evidence=IEA

GO:0061133 "endopeptidase activator activity" evidence=IEA

GO:0008541 "proteasome regulatory particle, lid subcomplex" evidence=IEA

GO:0006303 "double-strand break repair via nonhomologous end joining" evidence=IEA

GO:0000724 "double-strand break repair via homologous recombination" evidence=IEA

MGI|MGI:1913284 Psmd14 "proteasome (prosome, macropain) 26S subunit, non-ATPase, 14" [Mus musculus (taxid:10090)]

 Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
 Identities = 76/91 (83%), Positives = 84/91 (92%)

Query:     1 MMVLGQEPRQTTSNLGHLQKHSVQALIHGLNRHYYSISINYRKNELEQKMLLNLHKKTWM 60
             MMVLG EPRQTTSNLGHL K S+QALIHGLNRHYYSI+INYRKNELEQKMLLNLHKK+WM
Sbjct:   167 MMVLGHEPRQTTSNLGHLNKPSIQALIHGLNRHYYSITINYRKNELEQKMLLNLHKKSWM 226

Query:    61 DGLSLQDYNEHCKLNEGTVNDMLELAKHYNK 91
             +GL+LQDY+EHCK NE  V +MLELAK+YNK
Sbjct:   227 EGLTLQDYSEHCKHNESVVKEMLELAKNYNK 257

GO:0000502 "proteasome complex" evidence=ISS

GO:0000724 "double-strand break repair via homologous recombination" evidence=ISO

GO:0004175 "endopeptidase activity" evidence=ISS

GO:0004221 "ubiquitin thiolesterase activity" evidence=ISO

GO:0006281 "DNA repair" evidence=IEA

GO:0006303 "double-strand break repair via nonhomologous end joining" evidence=ISO

GO:0006508 "proteolysis" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=IEA

GO:0008152 "metabolic process" evidence=ISS

GO:0008233 "peptidase activity" evidence=IEA

GO:0008237 "metallopeptidase activity" evidence=IEA

GO:0008541 "proteasome regulatory particle, lid subcomplex" evidence=ISO

GO:0010950 "positive regulation of endopeptidase activity" evidence=ISO

GO:0016787 "hydrolase activity" evidence=IEA

GO:0022624 "proteasome accessory complex" evidence=IDA

GO:0046872 "metal ion binding" evidence=IEA

GO:0061133 "endopeptidase activator activity" evidence=ISO

GO:0061136 "regulation of proteasomal protein catabolic process" evidence=ISO

GO:0070536 "protein K63-linked deubiquitination" evidence=ISO

GO:0070628 "proteasome binding" evidence=ISO

RGD|1594532 Psmd14 "proteasome (prosome, macropain) 26S subunit, non-ATPase, 14" [Rattus norvegicus (taxid:10116)]

 Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
 Identities = 76/91 (83%), Positives = 84/91 (92%)

Query:     1 MMVLGQEPRQTTSNLGHLQKHSVQALIHGLNRHYYSISINYRKNELEQKMLLNLHKKTWM 60
             MMVLG EPRQTTSNLGHL K S+QALIHGLNRHYYSI+INYRKNELEQKMLLNLHKK+WM
Sbjct:   167 MMVLGHEPRQTTSNLGHLNKPSIQALIHGLNRHYYSITINYRKNELEQKMLLNLHKKSWM 226

Query:    61 DGLSLQDYNEHCKLNEGTVNDMLELAKHYNK 91
             +GL+LQDY+EHCK NE  V +MLELAK+YNK
Sbjct:   227 EGLTLQDYSEHCKHNESVVKEMLELAKNYNK 257

GO:0000724 "double-strand break repair via homologous recombination" evidence=ISO

GO:0004221 "ubiquitin thiolesterase activity" evidence=ISO

GO:0006303 "double-strand break repair via nonhomologous end joining" evidence=ISO

GO:0008541 "proteasome regulatory particle, lid subcomplex" evidence=ISO

GO:0010950 "positive regulation of endopeptidase activity" evidence=ISO

GO:0022624 "proteasome accessory complex" evidence=ISO

GO:0061133 "endopeptidase activator activity" evidence=ISO

GO:0061136 "regulation of proteasomal protein catabolic process" evidence=ISO

GO:0070536 "protein K63-linked deubiquitination" evidence=ISO

GO:0070628 "proteasome binding" evidence=ISO

UNIPROTKB|F1LMW6 Psmd14 "Protein Psmd14" [Rattus norvegicus (taxid:10116)]

 Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
 Identities = 76/91 (83%), Positives = 84/91 (92%)

Query:     1 MMVLGQEPRQTTSNLGHLQKHSVQALIHGLNRHYYSISINYRKNELEQKMLLNLHKKTWM 60
             MMVLG EPRQTTSNLGHL K S+QALIHGLNRHYYSI+INYRKNELEQKMLLNLHKK+WM
Sbjct:   151 MMVLGHEPRQTTSNLGHLNKPSIQALIHGLNRHYYSITINYRKNELEQKMLLNLHKKSWM 210

Query:    61 DGLSLQDYNEHCKLNEGTVNDMLELAKHYNK 91
             +GL+LQDY+EHCK NE  V +MLELAK+YNK
Sbjct:   211 EGLTLQDYSEHCKHNESVVKEMLELAKNYNK 241

GO:0000724 "double-strand break repair via homologous recombination" evidence=IEA

GO:0006303 "double-strand break repair via nonhomologous end joining" evidence=IEA

GO:0008541 "proteasome regulatory particle, lid subcomplex" evidence=IEA

GO:0061133 "endopeptidase activator activity" evidence=IEA

GO:0061136 "regulation of proteasomal protein catabolic process" evidence=IEA

GO:0070628 "proteasome binding" evidence=IEA

TAIR|locus:2171696 AT5G23540 "AT5G23540" [Arabidopsis thaliana (taxid:3702)]

 Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
 Identities = 67/90 (74%), Positives = 77/90 (85%)

Query:     2 MVLGQEPRQTTSNLGHLQKHSVQALIHGLNRHYYSISINYRKNELEQKMLLNLHKKTWMD 61
             ++LGQEPRQTTSNLGHL K S+QALIHGLNRHYYSI+INYRKNELE+KMLLNLHKK W D
Sbjct:   167 IMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTD 226

Query:    62 GLSLQDYNEHCKLNEGTVNDMLELAKHYNK 91
             GL+L+ ++ H K NE TV +ML LA  YNK
Sbjct:   227 GLTLRRFDTHSKTNEQTVQEMLSLAAKYNK 256

GO:0008541 "proteasome regulatory particle, lid subcomplex" evidence=ISS

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA;TAS

GO:0005634 "nucleus" evidence=TAS

GO:0030163 "protein catabolic process" evidence=TAS

GO:0009651 "response to salt stress" evidence=IEP;RCA

GO:0000502 "proteasome complex" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006096 "glycolysis" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0006623 "protein targeting to vacuole" evidence=RCA

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0006972 "hyperosmotic response" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0009266 "response to temperature stimulus" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

GO:0010388 "cullin deneddylation" evidence=RCA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0043248 "proteasome assembly" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

GO:0080129 "proteasome core complex assembly" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O00487	PSDE_HUMAN	3, ., 4, ., 1, 9, ., -	0.8260	0.9684	0.2967	yes	N/A
O35593	PSDE_MOUSE	3, ., 4, ., 1, 9, ., -	0.8260	0.9684	0.2967	yes	N/A
Q8SQY3	RPN11_ENCCU	No assigned EC number	0.6307	0.6842	0.2210	yes	N/A
Q9V3H2	PSDE_DROME	3, ., 4, ., 1, 9, ., -	0.8571	0.9578	0.2954	yes	N/A
P41878	RPN11_SCHPO	No assigned EC number	0.5555	0.9473	0.2922	yes	N/A
O76577	PSDE_CAEEL	3, ., 4, ., 1, 9, ., -	0.6373	0.9578	0.2916	yes	N/A
P43588	RPN11_YEAST	No assigned EC number	0.5411	0.8947	0.2777	yes	N/A
Q9LT08	PSDE_ARATH	3, ., 4, ., 1, 9, ., -	0.7362	0.9578	0.2954	yes	N/A
Q86IJ1	PSDE_DICDI	3, ., 4, ., 1, 9, ., -	0.6744	0.9052	0.2810	yes	N/A
Q6FKS1	RPN11_CANGA	No assigned EC number	0.5581	0.9052	0.2810	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	95
cd08069	268	cd08069, MPN_RPN11_CSN5, Mov34/MPN/PAD-1 family: p	2e-29
pfam13012	115	pfam13012, MitMem_reg, Maintenance of mitochondria	1e-17

>gnl|CDD|163700 cd08069, MPN_RPN11_CSN5, Mov34/MPN/PAD-1 family: proteasomal regulatory protein Rpn11 and signalosome complex subunit CSN5

 Score =  105 bits (264), Expect = 2e-29
 Identities = 39/85 (45%), Positives = 55/85 (64%), Gaps = 3/85 (3%)

Query: 7   EPRQTTSNLGHLQKHSVQALIHGLNRHYYSISINYRKNELEQKMLLNLHKKTWMDGLSLQ 66
           EPRQTTSN+GHL K  ++    G N+ YYS+ I Y K+ L++K+LLNL  K W++ LSL 
Sbjct: 153 EPRQTTSNIGHLPKPKIE-DFGGHNKQYYSLPIEYFKSSLDRKLLLNLWNKYWVNTLSLS 211

Query: 67  DYNEHCKLNEGTVNDMLELAKHYNK 91
              E+   NE T+  +L+LA+   K
Sbjct: 212 PLLENS--NEYTIKQILDLAEKLEK 234

This family contains proteasomal regulatory protein Rpn11 (26S proteasome regulatory subunit rpn11; PAD1; POH1; RPN11; PSMD14; Rpn11 subunit of the 19S-proteasome; regulatory particle number 11) and signalosomal CSN5 (COP9 signalosome complex subunit 5; COP9 complex homolog subunit 5; c-Jun activation domain-binding protein-1; CSN5/JAB1; JAB1). COP9 signalosome (CSN) and the proteasome lid are paralogous complexes and their respective subunits CSN5 and Rpn11 are most closely related between the two complexes, both containing the conserved JAMM (JAB1/MPN/Mov34 metalloenzyme) motif involved in zinc ion coordination and providing the active site for isopeptidase activity. Rpn11 is responsible for substrate deubiquitination during proteasomal degradation. It is essential for maintaining a correct cell cycle and normal mitochondrial morphology and physiology; mutations in Rpn11 cause cell cycle and mitochondrial defects, temperature sensitivity and sensitivity to DNA damaging reagents such as UV. It has been shown that the C-terminal region of Rpn11 is involved in the regulation of the mitochondrial fission and tubulation processes. CSN5, one of the eight subunits of CSN, is critical for nuclear export and the degradation of several tumor suppressor proteins, including p53, p27, and Smad4. Its MPN+ domain is critical for the physical interaction of RUNX3 and Jab1. It has been suggested that the direct interaction of CSN5/JAB1 with p27 provides p27 with a leucine-rich nuclear export signal (NES), which is required for binding to chromosomal region maintenance 1 (CRM1), and facilitates nuclear export. The over-expression of CSN5/JAB1 also has been implicated in cancer initiation and progression, including cancer of the lung, pancreas, mouth, thyroid, and breast, suggesting that the oncogenic activity of CSN5 is associated with the down-regulation of RUNX3. Length = 268

>gnl|CDD|205193 pfam13012, MitMem_reg, Maintenance of mitochondrial structure and function

 Score = 71.1 bits (175), Expect = 1e-17
 Identities = 33/89 (37%), Positives = 44/89 (49%), Gaps = 16/89 (17%)

Query: 6  QEPRQTTSNLGHLQKHSVQALIHGLNRHYYSISINYRKNELEQKMLLNLHKKTWMDGLSL 65
          QE  Q            V+ L+ GLNRHYYS +++ RK ELEQK L NLHK+ W  GL L
Sbjct: 1  QEAEQI----------GVEHLLRGLNRHYYS-TLS-RKLELEQKALKNLHKRLWTIGLYL 48

Query: 66 QDYN----EHCKLNEGTVNDMLELAKHYN 90
          +D               +  +L L  +Y+
Sbjct: 49 EDVIDGKLPPNHEILRKLQSLLNLLPNYD 77

This is C-terminal to the Mov24 region of the yeast proteasomal subunit Rpn11 and seems likely to regulate the mitochondrial fission and tubulation processes, ie the outer mitochondrial membrane proteins. This function appears to be unrelated to the proteasome activity of the N-terminal region. Length = 115

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	95
KOG1555|consensus	316		99.92
cd08069	268	MPN_RPN11_CSN5 Mov34/MPN/PAD-1 family: proteasomal	99.79
PF13012	115	MitMem_reg: Maintenance of mitochondrial structure	99.05
cd08065	266	MPN_eIF3h Mpr1p, Pad1p N-terminal (MPN) domains wi	95.23

>KOG1555|consensus

Probab=99.92  E-value=7.3e-26  Score=181.08  Aligned_cols=90  Identities=44%  Similarity=0.536  Sum_probs=87.3

Q ss_pred             cccCCCCcccccccccccc-hhHHHHHhhcCCceeeeeeeeeCCHHHHHHHhhhcccccccCCCccchHHHHhhhHHHHH
Q psy15739          2 MVLGQEPRQTTSNLGHLQK-HSVQALIHGLNRHYYSISINYRKNELEQKMLLNLHKKTWMDGLSLQDYNEHCKLNEGTVN   80 (95)
Q Consensus         2 ~m~gqEPRQTTSNiGhL~K-PSiqAlihGLnr~YYSi~I~yrk~~lEqkMLlnLhKk~W~~gL~l~~~~~~~~~N~~~v~   80 (95)
                      ++.|+||||||||+||+.+ ||+|+++||+| |||++.|.||+++.|++|++|+|+++|.++ ...+|.++.+.|++.+.
T Consensus       177 ~~~~~eprqtts~~~~m~~~~s~q~~~~g~n-~y~~~ei~~~v~~~~~~~~~nv~~~s~~~~-~~~~y~e~~k~~~~~~~  254 (316)
T KOG1555|consen  177 ISPGGEPRQTTSNGGHMDMQESLQEDIHGLN-RYYRIEIPLHVLPYEQLMLLNVPLKSWKSL-QDVLYEEKLKAYLQSVP  254 (316)
T ss_pred             ccCCCCCccccccccccccchhHHhHhhccC-ceEEEEeeEEechhhhhchhccchhhhhhc-chhhHHHHHHHhhhhhh
Confidence            5789999999999999999 99999999999 999999999999999999999999999999 99999999999999999


Q ss_pred             HHHHHHHHHhcCC
Q psy15739         81 DMLELAKHYNKGK   93 (95)
Q Consensus        81 ~m~~La~~Y~k~i   93 (95)
                      .|.+|++.|++.+
T Consensus       255 ~~~sL~~~~N~~~  267 (316)
T KOG1555|consen  255 SMKSLSKVYNKVC  267 (316)
T ss_pred             HHHhHHHHHHHHH
Confidence            9999999999764

>cd08069 MPN_RPN11_CSN5 Mov34/MPN/PAD-1 family: proteasomal regulatory protein Rpn11 and signalosome complex subunit CSN5

Probab=99.79  E-value=1.2e-19  Score=140.54  Aligned_cols=85  Identities=46%  Similarity=0.754  Sum_probs=82.4

Q ss_pred             CCcccccccccccchhHHHHHhhcCCceeeeeeeeeCCHHHHHHHhhhcccccccCCCccchHHHHhhhHHHHHHHHHHH
Q psy15739          7 EPRQTTSNLGHLQKHSVQALIHGLNRHYYSISINYRKNELEQKMLLNLHKKTWMDGLSLQDYNEHCKLNEGTVNDMLELA   86 (95)
Q Consensus         7 EPRQTTSNiGhL~KPSiqAlihGLnr~YYSi~I~yrk~~lEqkMLlnLhKk~W~~gL~l~~~~~~~~~N~~~v~~m~~La   86 (95)
                      |||+||||+|++.+|+++ ..+++++.||+|+|.|+++++|+.||.+|+++.|.++|.+.+|.+++  |...++.|.+|+
T Consensus       153 ~~~~~~s~~~~~~~~~~~-~~~~~~~~y~~l~i~~~~s~l~~~~L~~l~~~~w~~~l~~~~~~~~~--~~~~~~~~~~l~  229 (268)
T cd08069         153 EPRQTTSNIGHLPKPKIE-DFGGHNKQYYSLPIEYFKSSLDRKLLLNLWNKYWVNTLSLSPLLENS--NEYTIKQILDLA  229 (268)
T ss_pred             CcccCccccCccCcHHHH-HhCchhcEEEEeeeEEecCHHHHHHHHHHHHHhHHHHhhCCchhhhh--hHHHHHHHHHHH
Confidence            799999999999999999 99999999999999999999999999999999999999999998888  999999999999


Q ss_pred             HHHhcCCC
Q psy15739         87 KHYNKGKT   94 (95)
Q Consensus        87 ~~Y~k~i~   94 (95)
                      +.|++.+.
T Consensus       230 ~~~~~~~~  237 (268)
T cd08069         230 EKLEKAEQ  237 (268)
T ss_pred             HHHHHHHh
Confidence            99998864

This family contains proteasomal regulatory protein Rpn11 (26S proteasome regulatory subunit rpn11; PAD1; POH1; RPN11; PSMD14; Rpn11 subunit of the 19S-proteasome; regulatory particle number 11) and signalosomal CSN5 (COP9 signalosome complex subunit 5; COP9 complex homolog subunit 5; c-Jun activation domain-binding protein-1; CSN5/JAB1; JAB1). COP9 signalosome (CSN) and the proteasome lid are paralogous complexes and their respective subunits CSN5 and Rpn11 are most closely related between the two complexes, both containing the conserved JAMM (JAB1/MPN/Mov34 metalloenzyme) motif involved in zinc ion coordination and providing the active site for isopeptidase activity. Rpn11 is responsible for substrate deubiquitination during proteasomal degradation. It is essential for maintaining a correct cell cycle and normal mitochondrial morphology and physiology; mutations i

>PF13012 MitMem_reg: Maintenance of mitochondrial structure and function; PDB: 2O96_B 2O95_A

Probab=99.05  E-value=2.7e-11  Score=81.66  Aligned_cols=76  Identities=30%  Similarity=0.359  Sum_probs=13.4

Q ss_pred             CCCcccccccccccchhHHHHHhhcCCceeeeeeeeeCCHHHHHHHhhhcccccccCCCccch----HHHHhhhHHHHHH
Q psy15739          6 QEPRQTTSNLGHLQKHSVQALIHGLNRHYYSISINYRKNELEQKMLLNLHKKTWMDGLSLQDY----NEHCKLNEGTVND   81 (95)
Q Consensus         6 qEPRQTTSNiGhL~KPSiqAlihGLnr~YYSi~I~yrk~~lEqkMLlnLhKk~W~~gL~l~~~----~~~~~~N~~~v~~   81 (95)
                      +|||++          ++.+++||++++||| +|. +..+.+++||.+|++..|..+.-++++    .+.+..+...+.+
T Consensus         1 eEaEri----------gv~~l~~~~~~~~~s-~~~-~~l~~~~~al~~L~~~l~~i~~Yl~~v~~g~~~~d~~i~r~l~~   68 (115)
T PF13012_consen    1 EEAERI----------GVDHLARGLGDHYYS-SLS-SQLENEQNALKMLHKRLWQILDYLEDVISGEIPPDHEILRQLQD   68 (115)
T ss_dssp             SHHHHH----------HHHHHHHH--S-----------------------------------------------------
T ss_pred             CchHHH----------HHHHHHccCCCcccc-HHH-HHHHHHHHHHHHHHHhHHHHHHHHHHHHcCcCCCchhHHHHHHH
Confidence            478888          899999999999999 999 999999999999999999999999999    8889999999999


Q ss_pred             HHHHHHHH-hcCC
Q psy15739         82 MLELAKHY-NKGK   93 (95)
Q Consensus        82 m~~La~~Y-~k~i   93 (95)
                      ++.++..| .+.+
T Consensus        69 l~~~lp~~~~~~~   81 (115)
T PF13012_consen   69 LLSSLPKYDPEEF   81 (115)
T ss_dssp             -------------
T ss_pred             HHHhcccccHHHH
Confidence            99999988 4443

>cd08065 MPN_eIF3h Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in eIF2h

Probab=95.23  E-value=0.093  Score=40.69  Aligned_cols=44  Identities=16%  Similarity=0.276  Sum_probs=41.1

Q ss_pred             cccccchhHHHHHhhcCCceeeeeeeeeCCHHHHHHHhhhcccc
Q psy15739         15 LGHLQKHSVQALIHGLNRHYYSISINYRKNELEQKMLLNLHKKT   58 (95)
Q Consensus        15 iGhL~KPSiqAlihGLnr~YYSi~I~yrk~~lEqkMLlnLhKk~   58 (95)
                      -|++.++++++.-.+.+..|+.|||..+.+.|++.||..|....
T Consensus       144 ~~~~~~~~l~~~~~~~~~if~eiPv~i~n~~l~~~~L~~l~~~~  187 (266)
T cd08065         144 EGKFSTESLREANLTFSNIFEEIPVVIRNSHLVNALLSELEEDS  187 (266)
T ss_pred             cCCcCHHHHHHhcCchhcEEEEEEEEEEchHHHHHHHHhcccCC
Confidence            48999999999999999999999999999999999999997753

Eukaryotic translation initiation factor 3 (eIF3) subunit h (eIF3h; eIF3 subunit 3; eIF3S3; eIF3-gamma; eIF3-p40) is an evolutionarily non-conserved subunit of the functional core that comprises eIF3a, eIF3b, eIF3c, eIF3e, eIF3f, and eIF3h, and contains the MPN domain. However, it lacks the canonical JAMM motif, and therefore does not show catalytic isopeptidase activity.Together with eIF3e and eIF3f, eIF3h stabilizes the eIF3 complex. Results suggest that eIF3h regulates cell growth and viability, and that over-expression of the gene may provide growth advantage to prostate, breast, and liver cancer cells. For example, EIF3h gene amplification is common in late-stage prostate cancer suggesting that it may be functionally involved in the progression of the disease. It has been shown that coamplification of MYC, a well characterized oncogene involved in cell growth, different

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	95
4b4t_V	306	Near-Atomic Resolution Structural Model Of The Yeas		1e-21

>pdb|4B4T|V Chain V, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 306

Iteration: 1
 Score = 97.8 bits (242), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 46/85 (54%), Positives = 60/85 (70%)
Query: 7   EPRQTTSNLGHLQKHSVQALIHGLNRHYYSISINYRKNELEQKMLLNLHKKTWMDGLSLQ 66
           EPRQTTSN G L K ++QALIHGLNRHYYS++I+Y K   E KML+NLHK+ W  GL + 
Sbjct: 169 EPRQTTSNTGLLNKANIQALIHGLNRHYYSLNIDYHKTAKETKMLMNLHKEQWQSGLKMY 228
Query: 67  DYNEHCKLNEGTVNDMLELAKHYNK 91
           DY E  + N      M+++A+ Y+K
Sbjct: 229 DYEEKEESNLAATKSMVKIAEQYSK 253

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	95
3rzv_A	211	STAM-binding protein; ubiquitin hydrolase, endosom	9e-05

>3rzv_A STAM-binding protein; ubiquitin hydrolase, endosome-associated deubiquitinat enzyme, hydrolase; 1.67A {Homo sapiens} PDB: 3rzu_A Length = 211

 Score = 38.1 bits (88), Expect = 9e-05
 Identities = 4/41 (9%), Positives = 8/41 (19%)

Query: 2   MVLGQEPRQTTSNLGHLQKHSVQALIHGLNRHYYSISINYR 42
           +      RQ   +          +  H           + R
Sbjct: 171 LEEISSCRQKGFHPHSKDPPLFCSCSHVTVVDRAVTITDLR 211

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	95
4b4t_V	306	26S proteasome regulatory subunit RPN11; hydrolase	99.83

>4b4t_V 26S proteasome regulatory subunit RPN11; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.83  E-value=1.8e-22  Score=157.20  Aligned_cols=92  Identities=50%  Similarity=0.823  Sum_probs=57.0

Q ss_pred             ccCCCCcccccccccccchhHHHHHhhcCCceeeeeeeeeCCHHHHHHHhhhcccccccCCCccchHHHHhhhHHHHHHH
Q psy15739          3 VLGQEPRQTTSNLGHLQKHSVQALIHGLNRHYYSISINYRKNELEQKMLLNLHKKTWMDGLSLQDYNEHCKLNEGTVNDM   82 (95)
Q Consensus         3 m~gqEPRQTTSNiGhL~KPSiqAlihGLnr~YYSi~I~yrk~~lEqkMLlnLhKk~W~~gL~l~~~~~~~~~N~~~v~~m   82 (95)
                      ..+++|||++||.|++.+|+++++.||++++||+++|+|+|+++|++||.+|+++.|..+|.+.+|.++.+.|.+.+++|
T Consensus       165 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~yy~l~i~~~ks~le~~~L~~L~~~~w~~~l~~~~~~~~~~~~~~~i~~m  244 (306)
T 4b4t_V          165 INNLEPRQTTSNTGLLNKANIQALIHGLNRHYYSLNIDYHKTAKETKMLMNLHKEQWQSGLKMYDYEEKEESNLAATKSM  244 (306)
T ss_dssp             HCCCCCSCC----------------------CEEECSCCCCCSSCTHHHHHHHHC----------CHHHHHHHHHHHHHH
T ss_pred             ccccCcccccccccccCchhhhhhhccccceEEEeeeEEEeCcHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHH
Confidence            35789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCC
Q psy15739         83 LELAKHYNKGKT   94 (95)
Q Consensus        83 ~~La~~Y~k~i~   94 (95)
                      ++++++|.|.|+
T Consensus       245 ~~~~~~y~k~v~  256 (306)
T 4b4t_V          245 VKIAEQYSKRIE  256 (306)
T ss_dssp             SSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999999874

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00