Psyllid ID: psy15752

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110
Protein Sequence
MFLSRLEGHFVVDFMRSWLDCWEKETLQSYSGRINKIDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINEQGEFTLYDMDKIRNLEHGRDVLEQQRMQVTKWTEKE
Secondary Structure (PSIPRED)
ccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccEEEccHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccHHHccccEEEEccccccccHHHHHHHHHHHHHHHHHHHHHcccccEEEcccHHHHHHHHHHHHcccccccccccccEEEcccccccccccccHHHHcccccccccccc
Coil and Loop (DISEMBL)
mflsrleghFVVDFMRSWLDCWEKETLQSYSGrinkiddilqrnkvpiivggtNYYIESLLWTILLDnktnineqgeftlydmdkirnlehgrDVLEQQRMQVTKWTEKE
Flexible Loop (DISEMBL)
mflsrleghfvVDFMRSWLDCWEKETLQSYSgrinkiddilqrnkVPIIVGGTNYYIESLLWTILLDNKTNINEQGEFTLYDMDKIRNLehgrdvleqqrmqvtkwteke
Low Complexity Region (SEG)
MFLSRLEGHFVVDFMRSWLDCWEKETLQSYSGRINKIDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINEQGEFTLYDMDKIRNLEHGRDVLEQQRMQVTKWTEKE
Disordered region (IsUnstruct)
****RLEGHFVVDFMRSWLDCWEKETLQSYSGRINKIDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINEQGEFTLYDMDKIRNLEH*******************
Disordered Region (DISOPRED)
*FLSRLEGHFVVDFMRSWLDCWEKETLQSYSGRINKIDDILQRNKVPIIVGGTNYYIESLLWTILL********************************************
Disordered Region (DISEMBL)
MFLSRLEGHFVVDFMRSWLDCWEKETLQSYSGRINKIDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINEQGEFTLYDMDKIRNLEHGRDVLEQQR**********
Disordered Region (DISPRO)
MFLSRLEGHFVVDFMRSWLDCWEKETLQSYSGRINKIDDILQRNKVPIIVGGTNYYIESLLWTILLDNK*******EFTLYD**KIR***********************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MFLSRLEGHFVVDFMRSWLDCWEKETLQSYSGRINKIDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINEQGEFTLYDMDKIRNLEHGRDVLEQQRMQVTKWTEKE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	110	2.2.26 [Sep-21-2011]
Q9H3H1	467	tRNA dimethylallyltransfe	yes	N/A	0.3	0.070	0.666	1e-07
Q80UN9	467	tRNA dimethylallyltransfe	yes	N/A	0.3	0.070	0.666	2e-07
Q9ZUX7	466	tRNA dimethylallyltransfe	yes	N/A	0.563	0.133	0.338	0.0003
B1MD01	313	tRNA dimethylallyltransfe	yes	N/A	0.463	0.162	0.442	0.0004
A0Q0M8	314	tRNA dimethylallyltransfe	yes	N/A	0.727	0.254	0.326	0.0006

>sp|Q9H3H1|MOD5_HUMAN tRNA dimethylallyltransferase, mitochondrial OS=Homo sapiens GN=TRIT1 PE=1 SV=1

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/33 (66%), Positives = 29/33 (87%)

Query: 37  IDDILQRNKVPIIVGGTNYYIESLLWTILLDNK 69
           I+DI  R+K+PI+VGGTNYYIESLLW +L++ K
Sbjct: 106 IEDIFARDKIPIVVGGTNYYIESLLWKVLVNTK 138

Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 of both cytosolic and mitochondrial tRNAs, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A).
Homo sapiens (taxid: 9606)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: 7EC: 5

>sp|Q80UN9|MOD5_MOUSE tRNA dimethylallyltransferase, mitochondrial OS=Mus musculus GN=Trit1 PE=2 SV=2

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/33 (66%), Positives = 28/33 (84%)

Query: 37  IDDILQRNKVPIIVGGTNYYIESLLWTILLDNK 69
           I+DI  R+K+PI+VGGTNYYIESLLW +L+  K
Sbjct: 106 IEDIFARDKIPIVVGGTNYYIESLLWKVLITTK 138

Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 of both cytosolic and mitochondrial tRNAs, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A).

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 7

EC: 5

>sp|Q9ZUX7|IPT2_ARATH tRNA dimethylallyltransferase 2 OS=Arabidopsis thaliana GN=IPT2 PE=1 SV=2

 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 38/65 (58%), Gaps = 3/65 (4%)

Query: 37  IDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINEQG---EFTLYDMDKIRNLEHGR 93
           I++I+ RN +P++VGGT+YYI++++   LLD+     E+      ++ D D +     GR
Sbjct: 102 IEEIVSRNHIPVLVGGTHYYIQAVVSKFLLDDAAEDTEECCADVASVVDQDMVVESVFGR 161

Query: 94  DVLEQ 98
           D L  
Sbjct: 162 DDLSH 166

Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A). Involved in the cis-type cytokinin biosynthesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 7

EC: 5

>sp|B1MD01|MIAA_MYCA9 tRNA dimethylallyltransferase OS=Mycobacterium abscessus (strain ATCC 19977 / DSM 44196) GN=miaA PE=3 SV=1

 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 11  VVDFMRSWLDCWEKETLQSYSGR-INKIDDILQRNKVPIIVGGTNYYIESLL 61
           +V  M   LD  E  T+ +Y  R +  IDDI  R  VP+IVGG+  YI++LL
Sbjct: 57  LVHHMLDVLDVTETATVATYQERAVATIDDIRARGHVPVIVGGSMMYIQALL 108

Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A).

Mycobacterium abscessus (strain ATCC 19977 / DSM 44196) (taxid: 561007)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 7

EC: 5

>sp|A0Q0M8|MIAA_CLONN tRNA dimethylallyltransferase OS=Clostridium novyi (strain NT) GN=miaA PE=3 SV=1

 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 12/92 (13%)

Query: 9   HFVVDFMRSWLDCWEKETLQSYSGRINKIDDILQRNKVPIIVGGTNYYIESLLWTILLDN 68
           H ++DF+ S  D +     +  S   N I DI  R K+P+IVGGT +YI+SL++     N
Sbjct: 60  HHLIDFV-SPFDEFSVAEFKEKSK--NAIKDIASRGKLPMIVGGTGFYIDSLIFNYDFAN 116

Query: 69  KTNINEQGEFTLYDMDKIRNL--EHGRDVLEQ 98
                E  E        ++NL  EHG++ + +
Sbjct: 117 TYKDEEYREH-------LKNLASEHGKEYVHE 141

Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A).

Clostridium novyi (strain NT) (taxid: 386415)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 7

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	110
348542152	482	PREDICTED: tRNA dimethylallyltransferase	0.354	0.080	0.692	5e-08
363742426	448	PREDICTED: tRNA dimethylallyltransferase	0.390	0.095	0.581	2e-07
47229482	454	unnamed protein product [Tetraodon nigro	0.281	0.068	0.806	5e-07
58332462	457	tRNA isopentenyltransferase 1 [Xenopus (	0.309	0.074	0.735	5e-07
89268175	444	tRNA isopentenyltransferase 1 [Xenopus (	0.309	0.076	0.735	6e-07
380019144	901	PREDICTED: uncharacterized protein LOC10	0.290	0.035	0.75	7e-07
344287661	467	PREDICTED: tRNA dimethylallyltransferase	0.454	0.107	0.518	8e-07
410911182	446	PREDICTED: tRNA dimethylallyltransferase	0.281	0.069	0.806	8e-07
449488971	552	PREDICTED: tRNA dimethylallyltransferase	0.3	0.059	0.666	1e-06
156380728	420	predicted protein [Nematostella vectensi	0.6	0.157	0.390	1e-06

>gi|348542152|ref|XP_003458550.1| PREDICTED: tRNA dimethylallyltransferase, mitochondrial-like [Oreochromis niloticus]

 Score = 61.6 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 27/39 (69%), Positives = 33/39 (84%)

Query: 37  IDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINEQ 75
           IDD+ +RNK+PIIVGGTNYYIESLLW +LLD   + NE+
Sbjct: 101 IDDMHKRNKLPIIVGGTNYYIESLLWKVLLDTGVSENEE 139

Source: Oreochromis niloticus

Species: Oreochromis niloticus

Genus: Oreochromis

Family: Cichlidae

Order: Perciformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|363742426|ref|XP_417825.3| PREDICTED: tRNA dimethylallyltransferase, mitochondrial [Gallus gallus]

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/43 (58%), Positives = 33/43 (76%)

Query: 37  IDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINEQGEFT 79
           I+DI  R+K+PI+VGGTNYYIESLLW +L++ K +    G FT
Sbjct: 97  IEDIFARDKIPIVVGGTNYYIESLLWKVLVNTKKSTMVSGTFT 139

Source: Gallus gallus

Species: Gallus gallus

Genus: Gallus

Family: Phasianidae

Order: Galliformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|47229482|emb|CAF99470.1| unnamed protein product [Tetraodon nigroviridis]

 Score = 58.5 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 25/31 (80%), Positives = 28/31 (90%)

Query: 37  IDDILQRNKVPIIVGGTNYYIESLLWTILLD 67
           IDD+  RNK+PIIVGGTNYYIESLLW +LLD
Sbjct: 101 IDDMRSRNKLPIIVGGTNYYIESLLWKVLLD 131

Source: Tetraodon nigroviridis

Species: Tetraodon nigroviridis

Genus: Tetraodon

Family: Tetraodontidae

Order: Tetraodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|58332462|ref|NP_001011306.1| tRNA isopentenyltransferase 1 [Xenopus (Silurana) tropicalis] gi|56789100|gb|AAH88030.1| tRNA isopentenyltransferase 1 [Xenopus (Silurana) tropicalis]

 Score = 58.5 bits (140), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 25/34 (73%), Positives = 29/34 (85%)

Query: 37  IDDILQRNKVPIIVGGTNYYIESLLWTILLDNKT 70
           I+DI  RNK+PI+VGGTNYYIESLLW ILL+  T
Sbjct: 93  IEDIFSRNKIPIVVGGTNYYIESLLWKILLNTVT 126

Source: Xenopus (Silurana) tropicalis

Species: Xenopus (Silurana) tropicalis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|89268175|emb|CAJ82129.1| tRNA isopentenyltransferase 1 [Xenopus (Silurana) tropicalis]

 Score = 58.2 bits (139), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 25/34 (73%), Positives = 29/34 (85%)

Query: 37  IDDILQRNKVPIIVGGTNYYIESLLWTILLDNKT 70
           I+DI  RNK+PI+VGGTNYYIESLLW ILL+  T
Sbjct: 80  IEDIFSRNKIPIVVGGTNYYIESLLWKILLNTVT 113

Source: Xenopus (Silurana) tropicalis

Species: Xenopus (Silurana) tropicalis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|380019144|ref|XP_003693474.1| PREDICTED: uncharacterized protein LOC100868799 [Apis florea]

 Score = 57.8 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 24/32 (75%), Positives = 29/32 (90%)

Query: 37  IDDILQRNKVPIIVGGTNYYIESLLWTILLDN 68
           IDD+L R K+PIIVGGTNYYIES+LW +L+DN
Sbjct: 553 IDDLLTRRKLPIIVGGTNYYIESILWEVLMDN 584

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|344287661|ref|XP_003415571.1| PREDICTED: tRNA dimethylallyltransferase, mitochondrial [Loxodonta africana]

 Score = 57.8 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 28/54 (51%), Positives = 38/54 (70%), Gaps = 4/54 (7%)

Query: 37  IDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINEQGEFTLYDMDKIRNLE 90
           I+DI  R+K+PI+VGGTNYY+ESLLW +L++ K     QG  T+  MD+   LE
Sbjct: 106 IEDIFARDKIPIVVGGTNYYVESLLWKVLVNTKP----QGMDTMKVMDRKVELE 155

Source: Loxodonta africana

Species: Loxodonta africana

Genus: Loxodonta

Family: Elephantidae

Order: Proboscidea

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|410911182|ref|XP_003969069.1| PREDICTED: tRNA dimethylallyltransferase, mitochondrial-like [Takifugu rubripes]

 Score = 57.8 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 25/31 (80%), Positives = 28/31 (90%)

Query: 37  IDDILQRNKVPIIVGGTNYYIESLLWTILLD 67
           IDD+  RNK+PIIVGGTNYYIESLLW +LLD
Sbjct: 101 IDDMQSRNKLPIIVGGTNYYIESLLWKVLLD 131

Source: Takifugu rubripes

Species: Takifugu rubripes

Genus: Takifugu

Family: Tetraodontidae

Order: Tetraodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|449488971|ref|XP_002193412.2| PREDICTED: tRNA dimethylallyltransferase, mitochondrial [Taeniopygia guttata]

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/33 (66%), Positives = 29/33 (87%)

Query: 37  IDDILQRNKVPIIVGGTNYYIESLLWTILLDNK 69
           I+DI  R+K+PI+VGGTNYYIESLLW +L++ K
Sbjct: 202 IEDIFARDKIPIVVGGTNYYIESLLWKVLINTK 234

Source: Taeniopygia guttata

Species: Taeniopygia guttata

Genus: Taeniopygia

Family: Estrildidae

Order: Passeriformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|156380728|ref|XP_001631919.1| predicted protein [Nematostella vectensis] gi|156218968|gb|EDO39856.1| predicted protein [Nematostella vectensis]

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 46/87 (52%), Gaps = 21/87 (24%)

Query: 2   FLSRLEGHFVVDFMRSWLDCWEKETLQSYSGRINKIDDILQRNKVPIIVGGTNYYIESLL 61
           F+S L    VVDF    L                 I++I  R K+PI+VGGTNYYIESLL
Sbjct: 73  FVSPLNEFSVVDFRNMALPL---------------IEEIKGRGKIPIVVGGTNYYIESLL 117

Query: 62  WTILLDN------KTNINEQGEFTLYD 82
           W IL+DN       +++++ GE  + D
Sbjct: 118 WEILIDNDNKPPENSDVDDDGELQIVD 144

Source: Nematostella vectensis

Species: Nematostella vectensis

Genus: Nematostella

Family: Edwardsiidae

Order: Actiniaria

Class: Anthozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	110
UNIPROTKB|B4E3K2	144	TRIT1 "tRNA dimethylallyltrans	0.327	0.25	0.611	7.6e-09
UNIPROTKB|F6RA00	467	TRIT1 "Uncharacterized protein	0.581	0.137	0.462	5.1e-08
UNIPROTKB|Q9H3H1	467	TRIT1 "tRNA dimethylallyltrans	0.581	0.137	0.462	5.1e-08
MGI|MGI:1914216	467	Trit1 "tRNA isopentenyltransfe	0.581	0.137	0.447	6.6e-08
UNIPROTKB|E1C6R1	459	TRIT1 "Uncharacterized protein	0.390	0.093	0.568	8.2e-08
UNIPROTKB|F1SMC5	413	TRIT1 "Uncharacterized protein	0.563	0.150	0.446	1.4e-07
RGD|1304781	479	Trit1 "tRNA isopentenyltransfe	0.527	0.121	0.457	3e-07
ZFIN|ZDB-GENE-060503-297	455	trit1 "tRNA isopentenyltransfe	0.5	0.120	0.435	9.7e-07
UNIPROTKB|F1Q3P4	468	TRIT1 "Uncharacterized protein	0.554	0.130	0.437	1.7e-06
FB|FBgn0043799	477	CG31381 [Drosophila melanogast	0.345	0.079	0.526	9.7e-06

UNIPROTKB|B4E3K2 TRIT1 "tRNA dimethylallyltransferase, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 132 (51.5 bits), Expect = 7.6e-09, P = 7.6e-09
 Identities = 22/36 (61%), Positives = 31/36 (86%)

Query:    37 IDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNI 72
             I+DI  R+K+PI+VGGTNYYIESLLW +L++ K ++
Sbjct:   106 IEDIFARDKIPIVVGGTNYYIESLLWKVLVNTKVSL 141

GO:0005524 "ATP binding" evidence=IEA

GO:0008033 "tRNA processing" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

UNIPROTKB|F6RA00 TRIT1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 133 (51.9 bits), Expect = 5.1e-08, P = 5.1e-08
 Identities = 31/67 (46%), Positives = 41/67 (61%)

Query:    37 IDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINEQGEFTLYDMDKIRNLEHGRDVL 96
             I+DI  R+K+PI+VGGTNYYIESLLW +L++ K    E G   + D       E G  VL
Sbjct:   106 IEDIFARDKIPIVVGGTNYYIESLLWKVLVNAKPQ--EMGTEKVIDRKVELEKEDGH-VL 162

Query:    97 EQQRMQV 103
              ++  QV
Sbjct:   163 HKRLSQV 169

GO:0005739 "mitochondrion" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008033 "tRNA processing" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|Q9H3H1 TRIT1 "tRNA dimethylallyltransferase, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 133 (51.9 bits), Expect = 5.1e-08, P = 5.1e-08
 Identities = 31/67 (46%), Positives = 41/67 (61%)

Query:    37 IDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINEQGEFTLYDMDKIRNLEHGRDVL 96
             I+DI  R+K+PI+VGGTNYYIESLLW +L++ K    E G   + D       E G  VL
Sbjct:   106 IEDIFARDKIPIVVGGTNYYIESLLWKVLVNTKPQ--EMGTEKVIDRKVELEKEDGL-VL 162

Query:    97 EQQRMQV 103
              ++  QV
Sbjct:   163 HKRLSQV 169

GO:0005524 "ATP binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0052381 "tRNA dimethylallyltransferase activity" evidence=TAS

GO:0008033 "tRNA processing" evidence=NAS

GO:0005575 "cellular_component" evidence=ND

MGI|MGI:1914216 Trit1 "tRNA isopentenyltransferase 1" [Mus musculus (taxid:10090)]

 Score = 132 (51.5 bits), Expect = 6.6e-08, P = 6.6e-08
 Identities = 30/67 (44%), Positives = 40/67 (59%)

Query:    37 IDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINEQGEFTLYDMDKIRNLEHGRDVL 96
             I+DI  R+K+PI+VGGTNYYIESLLW +L+  K    E G   + D       E G + L
Sbjct:   106 IEDIFARDKIPIVVGGTNYYIESLLWKVLITTKPQ--EMGTGKVVDRKVELEKEDGHE-L 162

Query:    97 EQQRMQV 103
              ++  QV
Sbjct:   163 HKRLSQV 169

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0008033 "tRNA processing" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0052381 "tRNA dimethylallyltransferase activity" evidence=IEA

UNIPROTKB|E1C6R1 TRIT1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 131 (51.2 bits), Expect = 8.2e-08, P = 8.2e-08
 Identities = 25/44 (56%), Positives = 32/44 (72%)

Query:    37 IDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINE-QGEFT 79
             I+DI  R+K+PI+VGGTNYYIESLLW +L++ K       G FT
Sbjct:   107 IEDIFARDKIPIVVGGTNYYIESLLWKVLVNTKEKSTMVSGTFT 150

GO:0008033 "tRNA processing" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|F1SMC5 TRIT1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 128 (50.1 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 29/65 (44%), Positives = 39/65 (60%)

Query:    39 DILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINEQGEFTLYDMDKIRNLEHGRDVLEQ 98
             DI  R+K+PI+VGGTNYYIESLLW +L++ K    E G   + D       E G + L +
Sbjct:    51 DIFARDKIPIVVGGTNYYIESLLWKVLVNTKPQ--EMGTKKVIDRKAELEKEDGHE-LHK 107

Query:    99 QRMQV 103
             +  QV
Sbjct:   108 RLSQV 112

GO:0005739 "mitochondrion" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008033 "tRNA processing" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

RGD|1304781 Trit1 "tRNA isopentenyltransferase 1" [Rattus norvegicus (taxid:10116)]

 Score = 126 (49.4 bits), Expect = 3.0e-07, P = 3.0e-07
 Identities = 27/59 (45%), Positives = 35/59 (59%)

Query:    11 VVDFMRSWLDCWEKETLQSYSGRINKIDDILQRNKVPIIVGGTNYYIESLLWTILLDNK 69
             VVDF            L ++  R+    DI  R+K+PI+VGGTNYYIESLLW +L+  K
Sbjct:    95 VVDFRNRATALISLRKLSTHPWRVPS-GDIFARDKIPIVVGGTNYYIESLLWKVLVTTK 152

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0008033 "tRNA processing" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

ZFIN|ZDB-GENE-060503-297 trit1 "tRNA isopentenyltransferase 1" [Danio rerio (taxid:7955)]

 Score = 121 (47.7 bits), Expect = 9.7e-07, P = 9.7e-07
 Identities = 27/62 (43%), Positives = 40/62 (64%)

Query:     6 LEGHFVVDFMRSWLDCWEKETLQSYSGRINKIDDILQRNKVPIIVGGTNYYIESLLWTIL 65
             + G+ VVDF    L      +L S++    +I ++  R K+P+IVGGTNYYIES+LW +L
Sbjct:    81 VSGYTVVDFRNKAL------SLISFNACF-RIQNMHHRKKLPVIVGGTNYYIESILWKVL 133

Query:    66 LD 67
             +D
Sbjct:   134 ID 135

GO:0008033 "tRNA processing" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

UNIPROTKB|F1Q3P4 TRIT1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 119 (46.9 bits), Expect = 1.7e-06, P = 1.7e-06
 Identities = 28/64 (43%), Positives = 37/64 (57%)

Query:    40 ILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINEQGEFTLYDMDKIRNLEHGRDVLEQQ 99
             I  R+K+PI+VGGTNYYIESLLW +L++ K    E G   + D       E G   L ++
Sbjct:   110 IFARDKIPIVVGGTNYYIESLLWKVLVNTKPQ--EMGTEKVIDRKVELEKEDGH-ALHKR 166

Query:   100 RMQV 103
               QV
Sbjct:   167 LSQV 170

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008033 "tRNA processing" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

FB|FBgn0043799 CG31381 [Drosophila melanogaster (taxid:7227)]

 Score = 112 (44.5 bits), Expect = 9.7e-06, P = 9.7e-06
 Identities = 20/38 (52%), Positives = 29/38 (76%)

Query:    37 IDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINE 74
             ++ +L ++  PI+VGGTNYYIESLLW IL+D+    +E
Sbjct:    87 VERLLAKDTSPIVVGGTNYYIESLLWDILVDSDVKPDE 124

GO:0006400 "tRNA modification" evidence=ISS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	110
PLN02748	468	PLN02748, PLN02748, tRNA dimethylallyltransferase	2e-07
PRK00091	307	PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosp	5e-07
COG0324	308	COG0324, MiaA, tRNA delta(2)-isopentenylpyrophosph	1e-06
pfam01715	253	pfam01715, IPPT, IPP transferase	3e-06
TIGR00174	287	TIGR00174, miaA, tRNA dimethylallyltransferase	4e-05
PLN02165	334	PLN02165, PLN02165, adenylate isopentenyltransfera	7e-04

>gnl|CDD|215399 PLN02748, PLN02748, tRNA dimethylallyltransferase

 Score = 47.2 bits (112), Expect = 2e-07
 Identities = 19/32 (59%), Positives = 27/32 (84%)

Query: 37  IDDILQRNKVPIIVGGTNYYIESLLWTILLDN 68
           I++IL RN +P+IVGGTNYYI++L+   LLD+
Sbjct: 104 IEEILSRNGLPVIVGGTNYYIQALVSPFLLDD 135

Length = 468

>gnl|CDD|234626 PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed

 Score = 45.9 bits (110), Expect = 5e-07
 Identities = 16/26 (61%), Positives = 20/26 (76%)

Query: 36  KIDDILQRNKVPIIVGGTNYYIESLL 61
            I DIL R K+PI+VGGT  YI++LL
Sbjct: 85  AIADILARGKLPILVGGTGLYIKALL 110

Length = 307

>gnl|CDD|223401 COG0324, MiaA, tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]

 Score = 44.9 bits (107), Expect = 1e-06
 Identities = 16/28 (57%), Positives = 22/28 (78%)

Query: 34  INKIDDILQRNKVPIIVGGTNYYIESLL 61
           +  IDDIL R K+PI+VGGT  Y+++LL
Sbjct: 82  LAAIDDILARGKLPILVGGTGLYLKALL 109

Length = 308

>gnl|CDD|216659 pfam01715, IPPT, IPP transferase

 Score = 43.5 bits (103), Expect = 3e-06
 Identities = 12/27 (44%), Positives = 18/27 (66%)

Query: 35 NKIDDILQRNKVPIIVGGTNYYIESLL 61
            I +I  R K+P++VGGT  Y ++LL
Sbjct: 47 EAIAEIRARGKIPLLVGGTGLYFKALL 73

This is a family of IPP transferases EC:2.5.1.8 also known as tRNA delta(2)-isopentenylpyrophosphate transferase. These enzymes modify both cytoplasmic and mitochondrial tRNAs at A(37) to give isopentenyl A(37). Length = 253

>gnl|CDD|213512 TIGR00174, miaA, tRNA dimethylallyltransferase

 Score = 40.4 bits (95), Expect = 4e-05
 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 5/54 (9%)

Query: 9   HFVVDFMRSWLDCWEKETLQSY-SGRINKIDDILQRNKVPIIVGGTNYYIESLL 61
           H ++D     LD  E  +   + +  +N I DI  R K+P++VGGT  Y+++LL
Sbjct: 56  HHLIDI----LDPSESYSAADFQTQALNAIADITARGKIPLLVGGTGLYLKALL 105

Alternate names include delta(2)-isopentenylpyrophosphate transferase, IPP transferase, 2-methylthio-N6-isopentyladenosine tRNA modification enzyme. Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine. Understanding of substrate specificity has changed [Protein synthesis, tRNA and rRNA base modification]. Length = 287

>gnl|CDD|177823 PLN02165, PLN02165, adenylate isopentenyltransferase

 Score = 37.1 bits (86), Expect = 7e-04
 Identities = 12/27 (44%), Positives = 18/27 (66%)

Query: 35  NKIDDILQRNKVPIIVGGTNYYIESLL 61
             I +I  R K+PI+ GG+N +I +LL
Sbjct: 124 LSISEITSRQKLPIVAGGSNSFIHALL 150

Length = 334

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	110
PF01715	253	IPPT: IPP transferase; InterPro: IPR002627 tRNA is	100.0
PRK14729	300	miaA tRNA delta(2)-isopentenylpyrophosphate transf	100.0
COG0324	308	MiaA tRNA delta(2)-isopentenylpyrophosphate transf	100.0
PLN02748	468	tRNA dimethylallyltransferase	100.0
TIGR00174	287	miaA tRNA isopentenyltransferase (miaA). Catalyzes	100.0
PLN02840	421	tRNA dimethylallyltransferase	99.97
PRK00091	307	miaA tRNA delta(2)-isopentenylpyrophosphate transf	99.96
KOG1384|consensus	348		99.68
PLN02165	334	adenylate isopentenyltransferase	99.64
COG2069	403	CdhD CO dehydrogenase/acetyl-CoA synthase delta su	91.53
KOG1221|consensus	467		83.38
PRK13775	328	formimidoylglutamase; Provisional	80.22

>PF01715 IPPT: IPP transferase; InterPro: IPR002627 tRNA isopentenyltransferases 2

Probab=100.00  E-value=5.5e-37  Score=237.18  Aligned_cols=100  Identities=29%  Similarity=0.422  Sum_probs=81.9

Q ss_pred             cCCccceecccCCCCCCCCCCCHHHHHHHH-HHHHHHHhcCCceEEEccChhHHHHHHccc-CCCCCchh---------h
Q psy15752          5 RLEGHFVVDFMRSWLDCWEKETLQSYSGRI-NKIDDILQRNKVPIIVGGTNYYIESLLWTI-LLDNKTNI---------N   73 (110)
Q Consensus         5 ~~vpHhli~~v~~~~d~~e~ysv~~f~~~a-~~i~~i~~~gk~PIlVGGTglY~~all~g~-~~p~~~~~---------~   73 (110)
                      ++|||||||+    +||+++|||++|.++| ++|++|+++||+||||||||||++||++|+ .+|+.+..         +
T Consensus        20 ~~vpHhlid~----~~p~e~ysv~~f~~~a~~~i~~i~~rgk~PIlvGGTglYi~all~g~~~~p~~~~~~r~~~~~~~~   95 (253)
T PF01715_consen   20 AGVPHHLIDI----LDPDEEYSVGDFQRDAREAIEDILARGKIPILVGGTGLYIQALLNGLADIPEVDPELRAELRAELE   95 (253)
T ss_dssp             TTS-EESSS-----B-TTS---HHHHHHHHHHHHHHHHHTT-EEEEEES-HHHHHHHHCTS--TSSSHHHHHHHHHHHHH
T ss_pred             cCCCEeeeee----ecccCCCCHHHHHHHHHHHHHHHHhcCCeEEEECChHHHHHHHHhChhhhccccHHHHHHHHHHHH
Confidence            6899999999    7999999999999999 999999999999999999999999999999 47755422         5


Q ss_pred             hcCHHHHHHHHHhcChHHHhcccCCChhhhhhhcc
Q psy15752         74 EQGEFTLYDMDKIRNLEHGRDVLEQQRMQVTKWTE  108 (110)
Q Consensus        74 ~~g~~~l~~~L~~~DP~~a~~I~~nD~~Ri~r~~~  108 (110)
                      ..|.++||++|+++||++|++|||||++||+|++|
T Consensus        96 ~~~~~~l~~~L~~~DP~~A~~i~~nd~~Ri~RALe  130 (253)
T PF01715_consen   96 EEGNEELYEELKEVDPEAAAKIHPNDRRRIIRALE  130 (253)
T ss_dssp             HSCHHHHHHHHHHC-HHHHCTS-TT-HHHHHHHHH
T ss_pred             hccHHHHHHHHHhhCcHhhhcCCCCcHHHHHHHHH
Confidence            68999999999999999999999999999999987

5.1.8 from EC also known as tRNA delta(2)-isopentenylpyrophosphate transferases or IPP transferases. These enzymes modify both cytoplasmic and mitochondrial tRNAs at A(37) to give isopentenyl A(37) [].; GO: 0005524 ATP binding, 0008033 tRNA processing; PDB: 2ZXU_A 3FOZ_A 2ZM5_B 3D3Q_A 3EXA_B 2QGN_A 3A8T_A 3EPK_B 3EPH_A 3EPJ_A ....

>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional

Probab=100.00  E-value=1.6e-35  Score=234.59  Aligned_cols=101  Identities=20%  Similarity=0.319  Sum_probs=92.4

Q ss_pred             ccCCccceecccCCCCCCCCCCCHHHHHHHH-HHHHHHHhcCCceEEEccChhHHHHHHcccC-CCCCchh---------
Q psy15752          4 SRLEGHFVVDFMRSWLDCWEKETLQSYSGRI-NKIDDILQRNKVPIIVGGTNYYIESLLWTIL-LDNKTNI---------   72 (110)
Q Consensus         4 ~~~vpHhli~~v~~~~d~~e~ysv~~f~~~a-~~i~~i~~~gk~PIlVGGTglY~~all~g~~-~p~~~~~---------   72 (110)
                      .++|||||||+    ++|.++|||++|+++| ++|++++++|++||||||||||++||++|+. .|+.++.         
T Consensus        55 ~~~i~Hhlid~----~~p~e~~sv~~f~~~a~~~i~~i~~~gk~PilvGGTglYi~all~gl~~~p~~~~~~r~~~~~~~  130 (300)
T PRK14729         55 RKHIKHHLVDF----LEPIKEYNLGIFYKEALKIIKELRQQKKIPIFVGGSAFYFKHLKYGLPSTPPVSSKIRIYVNNLF  130 (300)
T ss_pred             HcCCCeeeeec----cCCCCceeHHHHHHHHHHHHHHHHHCCCCEEEEeCchHHHHHHHcCCCCCCCCCHHHHHHHHHHH
Confidence            36899999999    8999999999999999 9999999999999999999999999999984 4543321         


Q ss_pred             hhcCHHHHHHHHHhcChHHHhcccCCChhhhhhhcc
Q psy15752         73 NEQGEFTLYDMDKIRNLEHGRDVLEQQRMQVTKWTE  108 (110)
Q Consensus        73 ~~~g~~~l~~~L~~~DP~~a~~I~~nD~~Ri~r~~~  108 (110)
                      +..|.++||++|+++||++|++|||||++||+|++|
T Consensus       131 ~~~g~~~l~~~L~~~DP~~A~~i~pnd~~Ri~RALE  166 (300)
T PRK14729        131 TLKGKSYLLEELKRVDFIRYESINKNDIYRIKRSLE  166 (300)
T ss_pred             HhcCHHHHHHHHHhcCHHHHhhCCcCCHHHHHHHHH
Confidence            357999999999999999999999999999999997

>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=8.4e-34  Score=225.52  Aligned_cols=101  Identities=28%  Similarity=0.337  Sum_probs=93.8

Q ss_pred             ccCCccceecccCCCCCCCCCCCHHHHHHHH-HHHHHHHhcCCceEEEccChhHHHHHHccc-CCCCCchh---------
Q psy15752          4 SRLEGHFVVDFMRSWLDCWEKETLQSYSGRI-NKIDDILQRNKVPIIVGGTNYYIESLLWTI-LLDNKTNI---------   72 (110)
Q Consensus         4 ~~~vpHhli~~v~~~~d~~e~ysv~~f~~~a-~~i~~i~~~gk~PIlVGGTglY~~all~g~-~~p~~~~~---------   72 (110)
                      .++|||||||+    +||++.|||++|+++| ++|++|.++||+||||||||||++||++|+ ..|..+..         
T Consensus        55 ~~~vpHhliDi----~~p~e~ysa~~f~~~a~~~i~~i~~rgk~pIlVGGTglY~~aL~~g~~~~p~~~~~~r~~~~~~~  130 (308)
T COG0324          55 LAGVPHHLIDI----RDPTESYSAAEFQRDALAAIDDILARGKLPILVGGTGLYLKALLEGLSLLPEADPEVRRRLEAEL  130 (308)
T ss_pred             HcCCCEEEecc----cCccccccHHHHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHHHcCCCCCCCCCHHHHHHHHHHH
Confidence            36899999999    8999999999999999 999999999999999999999999999999 46764422         


Q ss_pred             hhcCHHHHHHHHHhcChHHHhcccCCChhhhhhhcc
Q psy15752         73 NEQGEFTLYDMDKIRNLEHGRDVLEQQRMQVTKWTE  108 (110)
Q Consensus        73 ~~~g~~~l~~~L~~~DP~~a~~I~~nD~~Ri~r~~~  108 (110)
                      +..|..+||+.|+++||++|++|||||++|++|++|
T Consensus       131 ~~~g~~~L~~~L~~~Dp~~a~~i~pnD~~Ri~RALE  166 (308)
T COG0324         131 AELGNDALHAELKKIDPEAAAKIHPNDPQRIIRALE  166 (308)
T ss_pred             HhcCHHHHHHHHHhhCHHHHHhcCCCchhHHHHHHH
Confidence            478999999999999999999999999999999997

>PLN02748 tRNA dimethylallyltransferase

Probab=100.00  E-value=5e-33  Score=231.03  Aligned_cols=101  Identities=25%  Similarity=0.414  Sum_probs=90.3

Q ss_pred             ccCCccceecccCCCCCCCCCCCHHHHHHHH-HHHHHHHhcCCceEEEccChhHHHHHHcccCC---CCCc---------
Q psy15752          4 SRLEGHFVVDFMRSWLDCWEKETLQSYSGRI-NKIDDILQRNKVPIIVGGTNYYIESLLWTILL---DNKT---------   70 (110)
Q Consensus         4 ~~~vpHhli~~v~~~~d~~e~ysv~~f~~~a-~~i~~i~~~gk~PIlVGGTglY~~all~g~~~---p~~~---------   70 (110)
                      .++|||||||+    ++|+++|||++|.++| ++|++|+++|++||||||||||++||++|+.+   |+..         
T Consensus        74 ~~~VpHHLid~----v~p~e~ysv~~F~~~A~~~I~~I~~rgk~PIlVGGTglYi~aLl~g~~~~~~p~~~~~~~~~~~~  149 (468)
T PLN02748         74 QKGVPHHLLGV----ISPSVEFTAKDFRDHAVPLIEEILSRNGLPVIVGGTNYYIQALVSPFLLDDMAEETEDCTFVVAS  149 (468)
T ss_pred             HcCCCCeeEee----cCCCCcCcHHHHHHHHHHHHHHHHhcCCCeEEEcChHHHHHHHHcCcccccCCccccccccccCH
Confidence            46899999999    7999999999999999 99999999999999999999999999999843   2111         


Q ss_pred             ----------hhhhcCHHHHHHHHHhcChHHHhcccCCChhhhhhhcc
Q psy15752         71 ----------NINEQGEFTLYDMDKIRNLEHGRDVLEQQRMQVTKWTE  108 (110)
Q Consensus        71 ----------~~~~~g~~~l~~~L~~~DP~~a~~I~~nD~~Ri~r~~~  108 (110)
                                .....|.++||++|+++||++|++|||||++||+|+||
T Consensus       150 ~~r~~l~~~~~~~~~g~~~l~~~L~~vDP~~A~rihpnD~rRI~RALE  197 (468)
T PLN02748        150 VLDEHMDVESGLGNDDEDHGYELLKELDPVAANRIHPNNHRKINRYLE  197 (468)
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHhhCHHHHhhcCCccHHHHHHHHH
Confidence                      01235889999999999999999999999999999997

>TIGR00174 miaA tRNA isopentenyltransferase (miaA)

Probab=100.00  E-value=7.5e-33  Score=218.15  Aligned_cols=100  Identities=27%  Similarity=0.337  Sum_probs=91.7

Q ss_pred             cCCccceecccCCCCCCCCCCCHHHHHHHH-HHHHHHHhcCCceEEEccChhHHHHHHcccC-CCCCch---------hh
Q psy15752          5 RLEGHFVVDFMRSWLDCWEKETLQSYSGRI-NKIDDILQRNKVPIIVGGTNYYIESLLWTIL-LDNKTN---------IN   73 (110)
Q Consensus         5 ~~vpHhli~~v~~~~d~~e~ysv~~f~~~a-~~i~~i~~~gk~PIlVGGTglY~~all~g~~-~p~~~~---------~~   73 (110)
                      ++|||||||+    ++|.+.|||++|..+| +.|++++++|++||||||||||++||++|+. .|+.++         .+
T Consensus        52 ~~v~hhlid~----~~~~~~~~v~~f~~~a~~~i~~~~~~g~~pi~vGGTg~Yi~all~g~~~~p~~~~~~r~~l~~~~~  127 (287)
T TIGR00174        52 EGIPHHLIDI----LDPSESYSAADFQTLALNAIADITARGKIPLLVGGTGLYLKALLEGLSPTPSADKLIREQLEILAE  127 (287)
T ss_pred             cCccEEEEEE----echhheEcHHHHHHHHHHHHHHHHhCCCCEEEEcCcHHHHHHHHcCCCCCCCCCHHHHHHHHHHHH
Confidence            5899999999    7999999999999999 9999999999999999999999999999984 454322         13


Q ss_pred             hcCHHHHHHHHHhcChHHHhcccCCChhhhhhhcc
Q psy15752         74 EQGEFTLYDMDKIRNLEHGRDVLEQQRMQVTKWTE  108 (110)
Q Consensus        74 ~~g~~~l~~~L~~~DP~~a~~I~~nD~~Ri~r~~~  108 (110)
                      ..|.+++|++|+++||++|++|||||++||+|++|
T Consensus       128 ~~g~~~l~~~L~~~DP~~a~~i~~nd~~Ri~RALE  162 (287)
T TIGR00174       128 EQGWDFLYNELKKVDPVAAAKIHPNDTRRVQRALE  162 (287)
T ss_pred             HcCHHHHHHHHHhcCHHHHHhcCCccHHHHHHHHH
Confidence            57999999999999999999999999999999997

Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.

>PLN02840 tRNA dimethylallyltransferase

Probab=99.97  E-value=1.2e-31  Score=220.37  Aligned_cols=100  Identities=16%  Similarity=0.269  Sum_probs=88.3

Q ss_pred             ccCCccceecccCCCCCCCCCCCHHHHHHHH-HHHHHHHhcCCceEEEccChhHHHHHHccc-CCCCCchh---------
Q psy15752          4 SRLEGHFVVDFMRSWLDCWEKETLQSYSGRI-NKIDDILQRNKVPIIVGGTNYYIESLLWTI-LLDNKTNI---------   72 (110)
Q Consensus         4 ~~~vpHhli~~v~~~~d~~e~ysv~~f~~~a-~~i~~i~~~gk~PIlVGGTglY~~all~g~-~~p~~~~~---------   72 (110)
                      .++|||||||+    ++|+++|||++|.++| ++|++++++|++||||||||||++||++|+ .+|..++.         
T Consensus        73 ~~~V~Hhlidi----l~p~e~ySv~~F~~~A~~~I~~i~~rgkiPIvVGGTGlYl~aLl~G~~~~p~~~~~~r~~l~~~l  148 (421)
T PLN02840         73 RKEVPHHLIDI----LHPSDDYSVGAFFDDARRATQDILNRGRVPIVAGGTGLYLRWYIYGKPDVPKSSPEITSEVWSEL  148 (421)
T ss_pred             HcCCCeEeEee----cCCCCceeHHHHHHHHHHHHHHHHhcCCCEEEEcCccHHHHHHhcCCCCCCCCCHHHHHHHHHHH
Confidence            36899999999    7999999999999999 999999999999999999999999999998 45643321         


Q ss_pred             hh----cCHHHHHHHH-HhcChHHHhcccCCChhhhhhhcc
Q psy15752         73 NE----QGEFTLYDMD-KIRNLEHGRDVLEQQRMQVTKWTE  108 (110)
Q Consensus        73 ~~----~g~~~l~~~L-~~~DP~~a~~I~~nD~~Ri~r~~~  108 (110)
                      ++    .|.+++|++| +.+|| +|++|||||++||+|+||
T Consensus       149 ~~~~~~~g~~~l~~~Ll~~~DP-~A~~i~pnD~~Ri~RALE  188 (421)
T PLN02840        149 VDFQKNGDWDAAVELVVNAGDP-KARSLPRNDWYRLRRSLE  188 (421)
T ss_pred             HHhccccCHHHHHHHHHhccCc-HHHhcCCCcHHHHHHHHH
Confidence            11    4588999996 55799 999999999999999997

>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed

Probab=99.96  E-value=5.6e-30  Score=203.13  Aligned_cols=100  Identities=27%  Similarity=0.319  Sum_probs=91.6

Q ss_pred             cCCccceecccCCCCCCCCCCCHHHHHHHH-HHHHHHHhcCCceEEEccChhHHHHHHccc-CCCCCchh---------h
Q psy15752          5 RLEGHFVVDFMRSWLDCWEKETLQSYSGRI-NKIDDILQRNKVPIIVGGTNYYIESLLWTI-LLDNKTNI---------N   73 (110)
Q Consensus         5 ~~vpHhli~~v~~~~d~~e~ysv~~f~~~a-~~i~~i~~~gk~PIlVGGTglY~~all~g~-~~p~~~~~---------~   73 (110)
                      .+|||||||+    ++|.+.||+++|.++| +.|++++++|++||||||||||++|+++|+ ..|+.++.         .
T Consensus        57 ~gv~hhlid~----~~~~~~~s~~~f~~~a~~~i~~i~~~gk~pIlvGGt~~Y~~al~~g~~~~p~~~~~~r~~l~~~~~  132 (307)
T PRK00091         57 AGVPHHLIDI----LDPTESYSVADFQRDALAAIADILARGKLPILVGGTGLYIKALLEGLSPLPPADPELRAELEALAA  132 (307)
T ss_pred             cCccEEeecc----cChhhcccHHHHHHHHHHHHHHHHhCCCCEEEECcHHHHHHHhccCCCCCCCCCHHHHHHHHHHHH
Confidence            6899999999    7999999999999999 999999999999999999999999999998 44543321         3


Q ss_pred             hcCHHHHHHHHHhcChHHHhcccCCChhhhhhhcc
Q psy15752         74 EQGEFTLYDMDKIRNLEHGRDVLEQQRMQVTKWTE  108 (110)
Q Consensus        74 ~~g~~~l~~~L~~~DP~~a~~I~~nD~~Ri~r~~~  108 (110)
                      ..|.+++|++|+++||++|++|||||++||+|++|
T Consensus       133 ~~g~~~l~~~L~~~Dp~~a~~i~~~d~~Ri~RAlE  167 (307)
T PRK00091        133 EEGWEALHAELAEIDPEAAARIHPNDPQRIIRALE  167 (307)
T ss_pred             hcCHHHHHHHHHhcCHHHHhhcCCCCCchhHHHHH
Confidence            56999999999999999999999999999999997

>KOG1384|consensus

Probab=99.68  E-value=2.4e-17  Score=132.48  Aligned_cols=57  Identities=28%  Similarity=0.449  Sum_probs=55.0

Q ss_pred             ccCCccceecccCCCCCCCCCCCHHHHHHHH-HHHHHHHhcCCceEEEccChhHHHHHHccc
Q psy15752          4 SRLEGHFVVDFMRSWLDCWEKETLQSYSGRI-NKIDDILQRNKVPIIVGGTNYYIESLLWTI   64 (110)
Q Consensus         4 ~~~vpHhli~~v~~~~d~~e~ysv~~f~~~a-~~i~~i~~~gk~PIlVGGTglY~~all~g~   64 (110)
                      +.+|||||+|+    ++|..+||+++|+++| ..|++|++|||+||+||||++|++||+.+-
T Consensus        59 ~~gVPHHLlg~----l~~~~e~t~~~F~~~a~~aie~I~~rgk~PIv~GGs~~yi~al~~~~  116 (348)
T KOG1384|consen   59 RKGVPHHLLGH----LHPEAEYTAGEFEDDASRAIEEIHSRGKLPIVVGGSNSYLQALLSKR  116 (348)
T ss_pred             cCCCChHHhCc----CChHhhccHHHHHHHHHHHHHHHHhCCCCCEEeCCchhhHHHHhhcC
Confidence            57999999999    7999999999999999 999999999999999999999999999984

>PLN02165 adenylate isopentenyltransferase

Probab=99.64  E-value=2.1e-16  Score=127.20  Aligned_cols=58  Identities=28%  Similarity=0.397  Sum_probs=54.4

Q ss_pred             ccCCccceecccCCCCCCCC-CCCHHHHHHHH-HHHHHHHhcCCceEEEccChhHHHHHHcccC
Q psy15752          4 SRLEGHFVVDFMRSWLDCWE-KETLQSYSGRI-NKIDDILQRNKVPIIVGGTNYYIESLLWTIL   65 (110)
Q Consensus         4 ~~~vpHhli~~v~~~~d~~e-~ysv~~f~~~a-~~i~~i~~~gk~PIlVGGTglY~~all~g~~   65 (110)
                      .+++||||+|+    ++|.+ .||+++|.+++ +.|++++++|++||+|||||||++||++|+.
T Consensus        95 r~gv~Hhli~~----~~~~~~~~sv~~F~~~a~~~I~~i~~~~~~PI~vGGTglYi~aLl~g~~  154 (334)
T PLN02165         95 RRGVPHHLLGE----LNPDDGELTASEFRSLASLSISEITSRQKLPIVAGGSNSFIHALLADRF  154 (334)
T ss_pred             HcCCChhhhhe----eccccceeeHHHHHHHHHHHHHHHHHCCCcEEEECChHHHHHHHHcCCC
Confidence            36899999999    79987 99999999999 9999999999999999999999999999963

>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]

Probab=91.53  E-value=0.21  Score=40.99  Aligned_cols=42  Identities=24%  Similarity=0.433  Sum_probs=32.4

Q ss_pred             ccCCccceecccCCCCCCC-CCCCHHHHHHHH-HHHHHHHhcCCceEEEccCh
Q psy15752          4 SRLEGHFVVDFMRSWLDCW-EKETLQSYSGRI-NKIDDILQRNKVPIIVGGTN   54 (110)
Q Consensus         4 ~~~vpHhli~~v~~~~d~~-e~ysv~~f~~~a-~~i~~i~~~gk~PIlVGGTg   54 (110)
                      +..|.-|||+.     ||. ..-++    +.| +.++++++.=++||++||||
T Consensus       165 admvTiHlIsT-----dPki~D~p~----~EAak~lEdvLqAVdvPiiiGGSG  208 (403)
T COG2069         165 ADMVTIHLIST-----DPKIKDTPA----KEAAKTLEDVLQAVDVPIIIGGSG  208 (403)
T ss_pred             CceEEEEeecC-----CccccCCCH----HHHHHHHHHHHHhcCcCEEecCCC
Confidence            45567789988     554 33333    456 99999999999999999997

>KOG1221|consensus

Probab=83.38  E-value=1  Score=38.41  Aligned_cols=55  Identities=18%  Similarity=0.235  Sum_probs=40.0

Q ss_pred             cCCceEEEccChhHHHHHHccc--CCCCCchh----------------hhcCHHHHHHHHHhcChHHHhcccC
Q psy15752         43 RNKVPIIVGGTNYYIESLLWTI--LLDNKTNI----------------NEQGEFTLYDMDKIRNLEHGRDVLE   97 (110)
Q Consensus        43 ~gk~PIlVGGTglY~~all~g~--~~p~~~~~----------------~~~g~~~l~~~L~~~DP~~a~~I~~   97 (110)
                      +||.-++.|||||.-+.+++-+  .-|+....                ...-.+.|+++|++.-|+.-.|+-|
T Consensus        11 ~~k~i~vTG~tGFlgKVliEklLr~~p~v~~IYlLiR~k~g~~~~~Rl~~~~~~~lF~~l~~~~p~~l~Kv~p   83 (467)
T KOG1221|consen   11 KNKTIFVTGATGFLGKVLIEKLLRTTPDVKRIYLLIRAKKGKAAQERLRTELKDPLFEVLKEKKPEALEKVVP   83 (467)
T ss_pred             CCCeEEEEcccchhHHHHHHHHHhcCcCcceEEEEEecCCCCCHHHHHHHHHhhhHHHHHHhhCccceeccee
Confidence            6899999999999999999886  23433210                1222348999999998887777655

>PRK13775 formimidoylglutamase; Provisional

Probab=80.22  E-value=5.2  Score=32.07  Aligned_cols=40  Identities=18%  Similarity=0.306  Sum_probs=30.9

Q ss_pred             CCHHHHHHHH-HHHHHHHhcCCceEEEccChhHHHHHHccc
Q psy15752         25 ETLQSYSGRI-NKIDDILQRNKVPIIVGGTNYYIESLLWTI   64 (110)
Q Consensus        25 ysv~~f~~~a-~~i~~i~~~gk~PIlVGGTglY~~all~g~   64 (110)
                      .++....... +.+.++.++|+.||+.||-+.---+.+.|+
T Consensus       103 ~~~~~~~~~l~~~v~~~~~~g~~PivlGGdHsit~g~~~g~  143 (328)
T PRK13775        103 RSLEQLQNSLSKAIKRMCDLNLKPIVLGGGHETAYGHYLGL  143 (328)
T ss_pred             cCHHHHHHHHHHHHHHHHhCCCeEEEEcCcHHHHHHHHHHH
Confidence            4566666666 889999999999999999976655555554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	110
3eph_A	409	Crystallographic Snapshots Of Eukaryotic Dimethylal		2e-04

>pdb|3EPH|A Chain A, Crystallographic Snapshots Of Eukaryotic Dimethylallyltransferase Acting On Trna: Insight Into Trna Recognition And Reaction Mechanism Length = 409

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 15/28 (53%), Positives = 24/28 (85%)
Query: 34  INKIDDILQRNKVPIIVGGTNYYIESLL 61
           +N I+DI +R K+PI+VGGT+YY+++L 
Sbjct: 81  MNAIEDIHRRGKIPIVVGGTHYYLQTLF 108

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	110
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	2e-10
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	2e-09
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	3e-07
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	4e-07
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	5e-07
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	6e-07
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	2e-06

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A* Length = 409

 Score = 55.0 bits (133), Expect = 2e-10
 Identities = 15/29 (51%), Positives = 24/29 (82%)

Query: 34  INKIDDILQRNKVPIIVGGTNYYIESLLW 62
           +N I+DI +R K+PI+VGGT+YY+++L  
Sbjct: 81  MNAIEDIHRRGKIPIVVGGTHYYLQTLFN 109

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} Length = 339

 Score = 52.2 bits (125), Expect = 2e-09
 Identities = 15/67 (22%), Positives = 32/67 (47%), Gaps = 5/67 (7%)

Query: 35  NKIDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINEQGEFTLYDMDKIRN-----L 89
             + +I  R K+P++VGG+N +I +LL      +   + E+G  ++   +   +     +
Sbjct: 121 KAVSEITGRRKLPVLVGGSNSFIHALLVDRFDSSGPGVFEEGSHSVVSSELRYDCCFLWV 180

Query: 90  EHGRDVL 96
           +    VL
Sbjct: 181 DVSVKVL 187

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} Length = 340

 Score = 46.0 bits (110), Expect = 3e-07
 Identities = 17/28 (60%), Positives = 19/28 (67%)

Query: 34  INKIDDILQRNKVPIIVGGTNYYIESLL 61
              I DI +R KVPII GGT  YI+SLL
Sbjct: 86  EKYIKDITRRGKVPIIAGGTGLYIQSLL 113

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A Length = 322

 Score = 45.6 bits (109), Expect = 4e-07
 Identities = 9/27 (33%), Positives = 18/27 (66%)

Query: 35  NKIDDILQRNKVPIIVGGTNYYIESLL 61
             I +I +R ++P +VGGT  Y+ +++
Sbjct: 83  PLITEIHERGRLPFLVGGTGLYVNAVI 109

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A Length = 323

 Score = 45.2 bits (108), Expect = 5e-07
 Identities = 9/25 (36%), Positives = 16/25 (64%)

Query: 37  IDDILQRNKVPIIVGGTNYYIESLL 61
           +     R ++P++VGGT  Y ++LL
Sbjct: 87  MAKATARGRIPLLVGGTMLYYKALL 111

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A Length = 316

 Score = 45.2 bits (108), Expect = 6e-07
 Identities = 10/26 (38%), Positives = 18/26 (69%)

Query: 36  KIDDILQRNKVPIIVGGTNYYIESLL 61
           ++ DI    ++P++VGGT  Y ++LL
Sbjct: 91  EMADITAAGRIPLLVGGTMLYFKALL 116

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A Length = 253

 Score = 43.7 bits (103), Expect = 2e-06
 Identities = 4/27 (14%), Positives = 11/27 (40%)

Query: 34  INKIDDILQRNKVPIIVGGTNYYIESL 60
           +    D  +  +  I+ GG+   +  +
Sbjct: 80  LIFEVDWRKSEEGLILEGGSISLLNCM 106

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	110
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	100.0
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	100.0
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	99.97
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	99.95
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	99.9
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	99.65
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	98.36
3pzl_A	313	Agmatine ureohydrolase; structural genomics, PSI-2	81.75
1woh_A	305	Agmatinase; alpha/beta fold, hydrolase; 1.75A {Dei	80.99
3niq_A	326	3-guanidinopropionase; GPUA, hydrolase; 2.07A {Pse	80.11

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=100.00  E-value=1.1e-33  Score=224.89  Aligned_cols=100  Identities=20%  Similarity=0.296  Sum_probs=92.0

Q ss_pred             cCCccceecccCCCCCCCCCCCHHHHHHHH-HHHHHHHhcCCceEEEccChhHHHHHHcccCCCCC--c-h--------h
Q psy15752          5 RLEGHFVVDFMRSWLDCWEKETLQSYSGRI-NKIDDILQRNKVPIIVGGTNYYIESLLWTILLDNK--T-N--------I   72 (110)
Q Consensus         5 ~~vpHhli~~v~~~~d~~e~ysv~~f~~~a-~~i~~i~~~gk~PIlVGGTglY~~all~g~~~p~~--~-~--------~   72 (110)
                      ++|||||||+    ++|.+.||+++|+.+| +.|++++++|++||||||||||++||++|+.+|+.  + .        .
T Consensus        56 ~gvphhlid~----~~~~e~~s~~~F~~~a~~~i~~i~~~gk~pIlVGGTglYi~aLl~g~~~~~~~~~~~~R~~l~~~~  131 (322)
T 3exa_A           56 DGVPHHLIDI----KDPSESFSVADFQDLATPLITEIHERGRLPFLVGGTGLYVNAVIHQFNLGDIRADEDYRHELEAFV  131 (322)
T ss_dssp             TTCCEESSSC----BCTTSCCCHHHHHHHHHHHHHHHHHTTCEEEEESCCHHHHHHHHHTCCCCCCBCCHHHHHHHHHHH
T ss_pred             cCCCEEEecc----CChhhhccHHHHHHHHHHHHHHHHhCCCcEEEEcCcHHHHHHHHcCCcCCCCCCCHHHHHHHHHHH
Confidence            6899999999    7999999999999999 99999999999999999999999999999965432  2 1        1


Q ss_pred             hhcCHHHHHHHHHhcChHHHhcccCCChhhhhhhcc
Q psy15752         73 NEQGEFTLYDMDKIRNLEHGRDVLEQQRMQVTKWTE  108 (110)
Q Consensus        73 ~~~g~~~l~~~L~~~DP~~a~~I~~nD~~Ri~r~~~  108 (110)
                      +..|.++||++|+++||++|++|||||++||+|+||
T Consensus       132 ~~~g~~~L~~~L~~~DP~~A~~i~pnd~~Ri~RALE  167 (322)
T 3exa_A          132 NSYGVQALHDKLSKIDPKAAAAIHPNNYRRVIRALE  167 (322)
T ss_dssp             HHSCHHHHHHHHHTTCHHHHTTSCTTCHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHhhCHHHHhhcCcccHHHHHHHHH
Confidence            467999999999999999999999999999999997

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=100.00  E-value=6.8e-34  Score=225.52  Aligned_cols=100  Identities=19%  Similarity=0.229  Sum_probs=92.8

Q ss_pred             cCCccceecccCCCCCCCCCCCHHHHHHHH-HHHHHHHhcCCceEEEccChhHHHHHHccc-CCCCCchh---------h
Q psy15752          5 RLEGHFVVDFMRSWLDCWEKETLQSYSGRI-NKIDDILQRNKVPIIVGGTNYYIESLLWTI-LLDNKTNI---------N   73 (110)
Q Consensus         5 ~~vpHhli~~v~~~~d~~e~ysv~~f~~~a-~~i~~i~~~gk~PIlVGGTglY~~all~g~-~~p~~~~~---------~   73 (110)
                      ++|||||||+    ++|.+.||+++|+++| +.|++++++|++||||||||||++||++|+ .+|+.++.         +
T Consensus        63 ~~v~hhlid~----~~~~e~~s~~~f~~~a~~~i~~i~~~g~~pilVGGTglYi~all~gl~~~p~~~~~~R~~l~~~~~  138 (316)
T 3foz_A           63 LAAPHRLLDI----RDPSQAYSAADFRRDALAEMADITAAGRIPLLVGGTMLYFKALLEGLSPLPSADPEVRARIEQQAA  138 (316)
T ss_dssp             HHSCEETSSC----BCTTSCCCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHSCCCCCCCCCHHHHHHHHHHHH
T ss_pred             cCCCEEEecc----CCccccccHHHHHHHHHHHHHHHHhCCCcEEEEcCcHHHHHHHHcCcCCCCCCCHHHHHHHHHHHH
Confidence            5799999999    7999999999999999 999999999999999999999999999998 56754422         4


Q ss_pred             hcCHHHHHHHHHhcChHHHhcccCCChhhhhhhcc
Q psy15752         74 EQGEFTLYDMDKIRNLEHGRDVLEQQRMQVTKWTE  108 (110)
Q Consensus        74 ~~g~~~l~~~L~~~DP~~a~~I~~nD~~Ri~r~~~  108 (110)
                      +.|.++||++|+++||++|++|||||++||+|+||
T Consensus       139 ~~g~~~l~~~L~~~DP~~A~ri~pnd~~Ri~RALE  173 (316)
T 3foz_A          139 EQGWESLHRQLQEVDPVAAARIHPNDPQRLSRALE  173 (316)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHSCTTCHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHhCHHHHhhCCCccHHHHHHHHH
Confidence            67999999999999999999999999999999997

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=99.97  E-value=1.8e-31  Score=217.56  Aligned_cols=100  Identities=22%  Similarity=0.334  Sum_probs=90.3

Q ss_pred             cCCccceecccCCCCCCCCCCCHHHHHHHH-HHHHHHHhcCCceEEEccChhHHHHHHccc-CCCC-Cch--------hh
Q psy15752          5 RLEGHFVVDFMRSWLDCWEKETLQSYSGRI-NKIDDILQRNKVPIIVGGTNYYIESLLWTI-LLDN-KTN--------IN   73 (110)
Q Consensus         5 ~~vpHhli~~v~~~~d~~e~ysv~~f~~~a-~~i~~i~~~gk~PIlVGGTglY~~all~g~-~~p~-~~~--------~~   73 (110)
                      .+|||||||+    +++.+.||+++|.++| +.|++|+++|++||||||||||++||++|+ +.|+ .+.        .+
T Consensus        55 ~gv~hhlid~----~~~~~~~s~~~F~~~a~~~i~~i~~~g~~pilVGGTglYi~aLl~gl~~~~~~~~~~~r~~~~~~~  130 (409)
T 3eph_A           55 EGIPHHVMNH----VDWSEEYYSHRFETECMNAIEDIHRRGKIPIVVGGTHYYLQTLFNKRVDTKSSERKLTRKQLDILE  130 (409)
T ss_dssp             TTCCEESCSC----BCTTSCCCHHHHHHHHHHHHHHHHTTTCEEEEECSCGGGGGGGGTCSCCCSSSCCCCCHHHHHHHT
T ss_pred             cCchhhcCCc----cChHhHhhHHHHHHHHHHHHHHHHhcCCCEEEECChHHHHHHHHccccCCCCccCHHHHHHHHHHh
Confidence            6899999999    7999999999999999 999999999999999999999999999997 3443 111        13


Q ss_pred             hcCHHHHHHHHHhcChHHHhcccCCChhhhhhhcc
Q psy15752         74 EQGEFTLYDMDKIRNLEHGRDVLEQQRMQVTKWTE  108 (110)
Q Consensus        74 ~~g~~~l~~~L~~~DP~~a~~I~~nD~~Ri~r~~~  108 (110)
                      ..|.++||++|+++||++|++|||||++||+|+||
T Consensus       131 ~~g~~~L~~~L~~~DP~~A~rihpnd~~Ri~RALE  165 (409)
T 3eph_A          131 STDPDVIYNTLVKCDPDIATKYHPNDYRRVQRMLE  165 (409)
T ss_dssp             CSSSSSHHHHHHHSCHHHHTTSCTTCHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHhCHHHHHhcCcccHHHHHHHHH
Confidence            45789999999999999999999999999999997

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=99.95  E-value=6.1e-29  Score=197.13  Aligned_cols=100  Identities=17%  Similarity=0.201  Sum_probs=54.3

Q ss_pred             cCCccceecccCCCCCCCCCCCHHHHHHHH-HHHHHHHhcCCceEEEccChhHHHHHHccc-CCCCCch---------hh
Q psy15752          5 RLEGHFVVDFMRSWLDCWEKETLQSYSGRI-NKIDDILQRNKVPIIVGGTNYYIESLLWTI-LLDNKTN---------IN   73 (110)
Q Consensus         5 ~~vpHhli~~v~~~~d~~e~ysv~~f~~~a-~~i~~i~~~gk~PIlVGGTglY~~all~g~-~~p~~~~---------~~   73 (110)
                      +++||||+|+    ++|.+.|+++.|.+.+ +.|+++.++|+.||+|||||+|++||++|+ .+|..+.         .+
T Consensus        58 ~gvph~lid~----~~~~~~~~~~~F~~~a~~~i~~i~~~g~~~IlvGGt~~y~~all~g~~~~p~~~~~~R~~l~~~~~  133 (323)
T 3crm_A           58 ARYPHRLIDI----RDPAESYSAAEFRADALAAMAKATARGRIPLLVGGTMLYYKALLEGLADMPGADPEVRAAIEAEAQ  133 (323)
T ss_dssp             HHSCEETSSC----BCTTSCCCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHCCC-------------------
T ss_pred             cCCCEEEeec----cCcccccCHHHHHHHHHHHHHHHHHcCCeEEEECCchhhHHHHHcCCCCCCCCCHHHHHHHHHHHH
Confidence            5799999999    7999999999999999 999999999999999999999999999998 5665321         14


Q ss_pred             hcCHHHHHHHHHhcChHHHhcccCCChhhhhhhcc
Q psy15752         74 EQGEFTLYDMDKIRNLEHGRDVLEQQRMQVTKWTE  108 (110)
Q Consensus        74 ~~g~~~l~~~L~~~DP~~a~~I~~nD~~Ri~r~~~  108 (110)
                      +.|.++||++|+++||++|++|||||++||+|+||
T Consensus       134 ~~g~~~l~~~L~~~Dp~~a~~i~~nd~~Ri~RALE  168 (323)
T 3crm_A          134 AEGWEALHRQLAEVDPESAARIHPNDPQRLMRALE  168 (323)
T ss_dssp             -----------------------------------
T ss_pred             HcCHHHHHHHHHHhCHHHHhhcCCCCHHHHHHHHH
Confidence            67899999999999999999999999999999998

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=99.90  E-value=5e-24  Score=170.01  Aligned_cols=100  Identities=28%  Similarity=0.372  Sum_probs=90.8

Q ss_pred             cCCccceecccCCCCCCCCCCCHHHHHHHH-HHHHHHHhcCCceEEEccChhHHHHHHccc-CCCC-Cchh---------
Q psy15752          5 RLEGHFVVDFMRSWLDCWEKETLQSYSGRI-NKIDDILQRNKVPIIVGGTNYYIESLLWTI-LLDN-KTNI---------   72 (110)
Q Consensus         5 ~~vpHhli~~v~~~~d~~e~ysv~~f~~~a-~~i~~i~~~gk~PIlVGGTglY~~all~g~-~~p~-~~~~---------   72 (110)
                      +++||||+|+    .++.+.|++++|.+.+ ..+.++.++|+.||+|||||+|++++++|+ .+|. .+.+         
T Consensus        60 ~~v~hhl~di----~~~~~~~~~~dF~~~a~~~i~~i~~~g~~~IlvGGt~ly~~~l~~~l~~~~~~~d~~~~~Rlrrrl  135 (340)
T 3d3q_A           60 EGIPHYMIDI----LPPDASFSAYEFKKRAEKYIKDITRRGKVPIIAGGTGLYIQSLLYNYAFEDESISEDKMKQVKLKL  135 (340)
T ss_dssp             TTCCEESSSC----BCTTSCCCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHBCSCCC---CCHHHHHHHHHHH
T ss_pred             HHHHHHHHHH----hCCccccCHHHHHHHHHHHHHHHHhCCCcEEEECChhhhHHHHHhcccccCCCCChHHHHHHHHHH
Confidence            5789999999    7999999999999999 999999999999999999999999999998 5565 4443         


Q ss_pred             ---hhcCHHHHHHHHHhcChHHHhcccCCChhhhhhhcc
Q psy15752         73 ---NEQGEFTLYDMDKIRNLEHGRDVLEQQRMQVTKWTE  108 (110)
Q Consensus        73 ---~~~g~~~l~~~L~~~DP~~a~~I~~nD~~Ri~r~~~  108 (110)
                         ++.|.+.+++.|+++||++|++|+|||++||+|+||
T Consensus       136 ~r~~~~G~~~l~~~L~~vdP~~a~~I~p~d~~Ri~RALE  174 (340)
T 3d3q_A          136 KELEHLNNNKLHEYLASFDKESAKDIHPNNRKRVLRAIE  174 (340)
T ss_dssp             HTTSSSCHHHHHHHHHHHCHHHHHHSCTTCHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHhhCcHHHhhcCccCchhhhhHHH
Confidence               457999999999999999999999999999999997

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=99.65  E-value=1.3e-16  Score=127.34  Aligned_cols=57  Identities=25%  Similarity=0.377  Sum_probs=54.6

Q ss_pred             ccCCccceecccCCCCCC-CCCCCHHHHHHHH-HHHHHHHhcCCceEEEccChhHHHHHHccc
Q psy15752          4 SRLEGHFVVDFMRSWLDC-WEKETLQSYSGRI-NKIDDILQRNKVPIIVGGTNYYIESLLWTI   64 (110)
Q Consensus         4 ~~~vpHhli~~v~~~~d~-~e~ysv~~f~~~a-~~i~~i~~~gk~PIlVGGTglY~~all~g~   64 (110)
                      ..++||||||+    ++| .+.|++++|+++| +.|++++++|++||+|||||+|++++++|+
T Consensus        92 ~~gvphhlidi----~~~~~e~~s~~~F~~~a~~~i~~i~~~g~~pIlvGGtglYi~all~g~  150 (339)
T 3a8t_A           92 RGGVPHHLLGE----VDPARGELTPADFRSLAGKAVSEITGRRKLPVLVGGSNSFIHALLVDR  150 (339)
T ss_dssp             GTTCCEESSSC----BCGGGCCCCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHBSS
T ss_pred             HcCCCEeeccc----cCcccCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHhCC
Confidence            36899999999    799 8999999999999 999999999999999999999999999997

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=98.36  E-value=3.8e-07  Score=68.26  Aligned_cols=54  Identities=15%  Similarity=0.114  Sum_probs=49.2

Q ss_pred             cCCccceecccCCCCCCCC-CCCHHHHHHHH-HHHHHHHhcCCceEEEccChhHHHHHHcc
Q psy15752          5 RLEGHFVVDFMRSWLDCWE-KETLQSYSGRI-NKIDDILQRNKVPIIVGGTNYYIESLLWT   63 (110)
Q Consensus         5 ~~vpHhli~~v~~~~d~~e-~ysv~~f~~~a-~~i~~i~~~gk~PIlVGGTglY~~all~g   63 (110)
                      .+++||+++.    .+|.+ .|++..|.+.+ ..+ ++.++|+.||++||++.|+++++.+
T Consensus        54 ~~~~~~~~~~----~~~~~~~~~~~~f~~~~~~~i-~~~~~g~~vIl~gg~~~~~~~~~~~  109 (253)
T 2ze6_A           54 QSTRRIYLDS----RPLTEGILDAESAHRRLIFEV-DWRKSEEGLILEGGSISLLNCMAKS  109 (253)
T ss_dssp             TTCCEECSCC----CCGGGCSCCHHHHHHHHHHHH-HTTTTSSEEEEEECCHHHHHHHHHC
T ss_pred             hCCCeEEEee----eccccccccHHHHHHHHHHHH-HHHhCCCCeEEeccHHHHHHHHHhc
Confidence            5689999998    68877 89999999999 888 8989999999999999999999876

>3pzl_A Agmatine ureohydrolase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.70A {Thermoplasma volcanium GSS1}

Probab=81.75  E-value=2.8  Score=32.37  Aligned_cols=41  Identities=15%  Similarity=0.394  Sum_probs=35.4

Q ss_pred             CCCHHHHHHHH-HHHHHHHhcCCceEEEccChhHHHHHHccc
Q psy15752         24 KETLQSYSGRI-NKIDDILQRNKVPIIVGGTNYYIESLLWTI   64 (110)
Q Consensus        24 ~ysv~~f~~~a-~~i~~i~~~gk~PIlVGGTglY~~all~g~   64 (110)
                      ..++....+.. +.+.++.++|+.||+.||-..=--+.+.++
T Consensus        93 ~~~~~~~~~~i~~~v~~~l~~g~~PivlGGdHsit~~~~~a~  134 (313)
T 3pzl_A           93 SEDVEYVIDTVESVVSAVMSDGKIPIMLGGEHSITVGAVRAL  134 (313)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHTTC
T ss_pred             CCCHHHHHHHHHHHHHHHHhCCCEEEEECCchHHHHHHHHHh
Confidence            56788888777 999999999999999999988777777776

>1woh_A Agmatinase; alpha/beta fold, hydrolase; 1.75A {Deinococcus radiodurans} SCOP: c.42.1.1 PDB: 1wog_A 1woi_A

Probab=80.99  E-value=2.4  Score=32.25  Aligned_cols=41  Identities=24%  Similarity=0.326  Sum_probs=35.8

Q ss_pred             CCCHHHHHHHH-HHHHHHHhcCCceEEEccChhHHHHHHccc
Q psy15752         24 KETLQSYSGRI-NKIDDILQRNKVPIIVGGTNYYIESLLWTI   64 (110)
Q Consensus        24 ~ysv~~f~~~a-~~i~~i~~~gk~PIlVGGTglY~~all~g~   64 (110)
                      ..++....+.. +.+.+++++|+.||+.||-+.---+.+.++
T Consensus        90 ~~~~~~~~~~i~~~v~~~l~~g~~pi~lGGdHsit~~~~~a~  131 (305)
T 1woh_A           90 SLEPQLAHDRITEAARQVRGRCRVPVFLGGDHSVSYPLLRAF  131 (305)
T ss_dssp             SSCHHHHHHHHHHHHHHHHTTEEEEEEEESSGGGHHHHHGGG
T ss_pred             CCCHHHHHHHHHHHHHHHHhCCCeEEEECCCccchHHHHHHH
Confidence            45788888888 999999999999999999988877787776

>3niq_A 3-guanidinopropionase; GPUA, hydrolase; 2.07A {Pseudomonas aeruginosa} PDB: 3nip_A

Probab=80.11  E-value=2.9  Score=32.37  Aligned_cols=41  Identities=17%  Similarity=0.261  Sum_probs=32.8

Q ss_pred             CCCHHHHHHHH-HHHHHHHhcCCceEEEccChhHHHHHHccc
Q psy15752         24 KETLQSYSGRI-NKIDDILQRNKVPIIVGGTNYYIESLLWTI   64 (110)
Q Consensus        24 ~ysv~~f~~~a-~~i~~i~~~gk~PIlVGGTglY~~all~g~   64 (110)
                      ..++....+.. +.+.+++++|+.||+.||-..=--+.+.++
T Consensus        95 ~~~~~~~~~~i~~~v~~~l~~g~~pi~lGGdHsit~~~~~al  136 (326)
T 3niq_A           95 PIDLLDSLRRIEGFYRQVHAAGTLPLSVGGDHLVTLPIFRAL  136 (326)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhCCCEEEEeCCcchhhHHHHHHH
Confidence            45777777777 999999999999999999877655655554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	110
d1pq3a_	306	Arginase {Human (Homo sapiens), isoform II, mitoch	84.18
d2aeba1	309	Arginase {Human (Homo sapiens) [TaxId: 9606]}	83.42
d2ceva_	298	Arginase {Bacillus caldovelox [TaxId: 33931]}	81.6
d2a0ma1	298	Arginase {Trypanosoma cruzi [TaxId: 5693]}	80.61

>d1pq3a_ c.42.1.1 (A:) Arginase {Human (Homo sapiens), isoform II, mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Arginase/deacetylase
superfamily: Arginase/deacetylase
family: Arginase-like amidino hydrolases
domain: Arginase
species: Human (Homo sapiens), isoform II, mitochondrial [TaxId: 9606]

Probab=84.18  E-value=0.42  Score=34.39  Aligned_cols=40  Identities=5%  Similarity=0.066  Sum_probs=31.1

Q ss_pred             CCHHHHHHHH-HHHHHHHhcCCceEEEccChhHHHHHHccc
Q psy15752         25 ETLQSYSGRI-NKIDDILQRNKVPIIVGGTNYYIESLLWTI   64 (110)
Q Consensus        25 ysv~~f~~~a-~~i~~i~~~gk~PIlVGGTglY~~all~g~   64 (110)
                      .++....+.. +.+.++.++|+.||++||-+.---+.+.|+
T Consensus        67 ~~~~~~~~~i~~~v~~~~~~g~~pi~lGGdHsis~~~~~a~  107 (306)
T d1pq3a_          67 RSVGLANQELAEVVSRAVSDGYSCVTLGGDHSLAIGTISGH  107 (306)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHhCCCceeEecCCCccchhhHHHH
Confidence            4566677777 888999999999999999766555666554

>d2aeba1 c.42.1.1 (A:5-313) Arginase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Arginase/deacetylase
superfamily: Arginase/deacetylase
family: Arginase-like amidino hydrolases
domain: Arginase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.42  E-value=0.52  Score=33.93  Aligned_cols=40  Identities=10%  Similarity=0.301  Sum_probs=31.3

Q ss_pred             CCHHHHHHHH-HHHHHHHhcCCceEEEccChhHHHHHHccc
Q psy15752         25 ETLQSYSGRI-NKIDDILQRNKVPIIVGGTNYYIESLLWTI   64 (110)
Q Consensus        25 ysv~~f~~~a-~~i~~i~~~gk~PIlVGGTglY~~all~g~   64 (110)
                      .++....+.. +.+.+++++|+.||+.||-+.---+.+.|+
T Consensus        67 ~~~~~~~~~l~~~v~~i~~~g~~pi~lGGdHsit~~~~~a~  107 (309)
T d2aeba1          67 RSVGKASEQLAGKVAEVKKNGRISLVLGGDHSLAIGSISGH  107 (309)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCeeEEecCCCcchHHHHHHH
Confidence            3567777777 889999999999999999887655555554

>d2ceva_ c.42.1.1 (A:) Arginase {Bacillus caldovelox [TaxId: 33931]}

class: Alpha and beta proteins (a/b)
fold: Arginase/deacetylase
superfamily: Arginase/deacetylase
family: Arginase-like amidino hydrolases
domain: Arginase
species: Bacillus caldovelox [TaxId: 33931]

Probab=81.60  E-value=0.68  Score=33.04  Aligned_cols=39  Identities=18%  Similarity=0.466  Sum_probs=29.4

Q ss_pred             CHHHHHHHH-HHHHHHHhcCCceEEEccChhHHHHHHccc
Q psy15752         26 TLQSYSGRI-NKIDDILQRNKVPIIVGGTNYYIESLLWTI   64 (110)
Q Consensus        26 sv~~f~~~a-~~i~~i~~~gk~PIlVGGTglY~~all~g~   64 (110)
                      ++....+.. +.+.+++++|+.||++||-+.=--+.+.|+
T Consensus        69 ~~~~~~~~i~~~v~~i~~~g~~pi~lGGdhsit~~~~~al  108 (298)
T d2ceva_          69 AVAEANEKLAAAVDQVVQRGRFPLVLGGDHSIAIGTLAGV  108 (298)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHhCCCeEEEecCCCccccchhhhh
Confidence            344555566 888889999999999999987655555554

>d2a0ma1 c.42.1.1 (A:13-310) Arginase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: Arginase/deacetylase
superfamily: Arginase/deacetylase
family: Arginase-like amidino hydrolases
domain: Arginase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=80.61  E-value=1  Score=32.36  Aligned_cols=38  Identities=24%  Similarity=0.365  Sum_probs=27.2

Q ss_pred             CHHHHHHHH-HHHHHHHhcCCceEEEccChhHHHHHHcc
Q psy15752         26 TLQSYSGRI-NKIDDILQRNKVPIIVGGTNYYIESLLWT   63 (110)
Q Consensus        26 sv~~f~~~a-~~i~~i~~~gk~PIlVGGTglY~~all~g   63 (110)
                      ++.+-.+.. +.+.+++++|+.||++||.+.-.-+++.|
T Consensus        81 ~~~~~~~~i~~~v~~~~~~g~~pivlGGdHsit~~~~~a  119 (298)
T d2a0ma1          81 TLEEAHEKLESKVFTVLARGAFPFVIGGGNDQSAPNGRA  119 (298)
T ss_dssp             SHHHHHHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHhCCCeeeeecCCcchhHHHHhh
Confidence            444555555 88888999999999999966544444444