Psyllid ID: psy15764

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------47

DEEKIGWRAVVSPPDHPVSQYEFNVLVGADGKRNTLEGFKRKEFRGKLAIAITANFINKKTEAEARVEEISGVAFIFNQKFFKDLYAETGIDLENIVYYKDDTHYFVMTAKKQSLLDKGVILNDFADTARLLSQDNIDKEALKEYARQAADFSTEYNLPHLEFAVNHYGQSDVAMFDFTSMYAAENACRFLERNGHKLLMTLVGDSLLEPFWPTGSGCARGFLSSMDACWAIRSWAAGILNPIEVLAERESIYRILGQTTPENLHRDHASYSLDPTTRYPNLNQRTVLPVQVKGLYDTDDPSTLELYLKAPSTLLAPGADQPKKRRRRDLLHSPRRGLRQSESSIRAITSPPLSLSCSLDSLHEREVRAHSGIKTGGLDEDISGRVRNLEEKFRGGVSPGRKPKDLYRAIGKIEKTDWNVKEIEKKIEENKYGKSTKPHSERVPKWSKQQFEDKFSAVERKLRKKDLNC

ccccccEEEEEccccccccccEEEEEEEcccccccccccccEEEcccEEEEEEEEEcccccHHHHcccccccHHHHHHHHHHHHHHHHHccccccEEEEccccEEEEEEHHHHcccccccccccccHHHHHcccccccHHHHHHHHHHHHcccccccccccccccccccccccEEEccHHHHHHHHHHHHHHHcccEEEEEEEccccccccccccccccccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccEEEcccccccHHHcccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccHHHHHHHcccccccccHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHcccc

cccccEEEEEEcccccccccEEEEEEEEccccccccccccEHHHccEEEEEEEEEHcccccHHHHcHHHHHHHHHHHcHHHHHHHHHHccccHHEEEEEcccccEEEEEcHHHHHHHcccEEcccHcHHHHHccccccHHHHHHHHHHHHHHccccccccHHHHHHccccccEEEEcHHHHHHHHHHHHHHHHccccEEEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccHHHHcHcHHHcccccccccccccHccccHHHHHHHEccccccHcccccccccccccccccccccccccHccccHHHHHHHHHccccccccccccHHHHHHHHcccccHHHcccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHcccccccccHHHHHHHHHHHcccccccccccEcccccHHHHHHHHHHHHcccccccccc

deekigwravvsppdhpvsqyeFNVLvgadgkrntlegfkrkeFRGKLAIAITANFINKKTEAEARVEEISGVAFIFNQKFFKDLYAetgidlenivyykddtHYFVMTAKKQSLLDKGVILNDFADTARLLSQDNIDKEALKEYARQAAdfsteynlphlEFAVNhygqsdvamfDFTSMYAAENACRFLERNGHKLLMTLVGdsllepfwptgsgcargflsSMDACWAIRSWAAGILNPIEVLAERESIYRILgqttpenlhrdhasysldpttrypnlnqrtvlpvqvkglydtddpstLELYLkapstllapgadqpkkrrrrdllhsprrglrqsessiraitspplslscsldslherevrahsgiktggldedisGRVRNLEEkfrggvspgrkpkDLYRAIGKIEKTDWNVKEIEKKIEenkygkstkphservpkwskqQFEDKFSAVERKLRKKDLNC

deekigwravvsppdhpvsqYEFNVLVGADGKRNTLEGFKRKEFRGKLAIAITANFINKKTEAEARVEEISGVAFIFNQKFFKDLYAETGIDLENIVYYKDDTHYFVMTAKKQSLLDKGVILNDFADTARLLSQDNIDKEALKEYARQAADFSTEYNLPHLEFAVNHYGQSDVAMFDFTSMYAAENACRFLERNGHKLLMTLVGDSLLEPFWPTGSGCARGFLSSMDACWAIRSWAAGILNPIEVLAERESIYRILgqttpenlhrDHASYSldpttrypnlnqrtvLPVQVKGLYDTDDPSTLELYLkapstllapgadqpkkrrrrdllhsprrglrqsessiraitspplslSCSLDSLHEREVrahsgiktggldedisgrvrnleekfrggvspgrkpkdlyraigkiektdwnvkeiekkieenkygkstkphservpkwskqqfedkfsaverklrkkdlnc

DEEKIGWRAVVSPPDHPVSQYEFNVLVGADGKRNTLEGFKRKEFRGKLAIAITANFINKKTEAEARVEEISGVAFIFNQKFFKDLYAETGIDLENIVYYKDDTHYFVMTAKKQSLLDKGVILNDFADTARLLSQDNIDKEALKEYARQAADFSTEYNLPHLEFAVNHYGQSDVAMFDFTSMYAAENACRFLERNGHKLLMTLVGDSLLEPFWPTGSGCARGFLSSMDACWAIRSWAAGILNPIEVLAERESIYRILGQTTPENLHRDHASYSLDPTTRYPNLNQRTVLPVQVKGLYDTDDPSTLELYLKAPSTLLAPGADQPKKrrrrdllhsprrGLRQSESSIRAITspplslscsldslHEREVRAHSGIKTGGLDEDISGRVRNLEEKFRGGVSPGRKPKDLYRAIGKIEKTDWNVkeiekkieenkYGKSTKPHSERVPKWSKQQFEDKFSAVERKLRKKDLNC

******WRAVV*****PVSQYEFNVLVGADGKRNTLEGFKRKEFRGKLAIAITANFINKKTEAEARVEEISGVAFIFNQKFFKDLYAETGIDLENIVYYKDDTHYFVMTAKKQSLLDKGVILNDFADTARLLSQDNIDKEALKEYARQAADFSTEYNLPHLEFAVNHYGQSDVAMFDFTSMYAAENACRFLERNGHKLLMTLVGDSLLEPFWPTGSGCARGFLSSMDACWAIRSWAAGILNPIEVLAERESIYRILGQTTPENLH*****YSLDPTTRYPNLNQRTVLPVQVKGLYDTDDPSTLELYLK************************************************************************************************LYRAIGKIEKTDWNVK************************************************

***KIGW*AVVSPPDHPVSQYEFNVLVGADGKRNTLEGFKRKEFRGKLAIAITANFINKKTEAEARVEEISGVAFIFNQKFFKDLYAETGIDLENIVYYKDDTHYFVMTAKKQSLLDKGVILNDFADTARLLSQDNIDKEALKEYARQAADFSTEYNLPHLEFAVNHYGQSDVAMFDFTSMYAAENACRFLERNGHKLLMTLVGDSLLEPFWPTGSGCARGFLSSMDACWAIRSWAAGILNPIEVLAERESIYRILGQTTPENLHRDHASYSLDPTTRYPNLNQRTVLPVQVKGLYDTDDPSTLELYL****************************************TSPPLSLSCSLDSLHERE****************************************YRAIGKIEKTDWNVKEIE*********************************************

DEEKIGWRAVVSPPDHPVSQYEFNVLVGADGKRNTLEGFKRKEFRGKLAIAITANFINKKTEAEARVEEISGVAFIFNQKFFKDLYAETGIDLENIVYYKDDTHYFVMTAKKQSLLDKGVILNDFADTARLLSQDNIDKEALKEYARQAADFSTEYNLPHLEFAVNHYGQSDVAMFDFTSMYAAENACRFLERNGHKLLMTLVGDSLLEPFWPTGSGCARGFLSSMDACWAIRSWAAGILNPIEVLAERESIYRILGQTTPENLHRDHASYSLDPTTRYPNLNQRTVLPVQVKGLYDTDDPSTLELYLKAPSTLLAPG*********RDLLHSPRRGLRQSESSIRAITSPPLSLSCSLDSLHEREVRAHSGIKTGGLDEDISGRVRNLEEKFRGGVSPGRKPKDLYRAIGKIEKTDWNVKEIEKKIEENK***************SKQQFEDKFSAVERKLRKKDLNC

***KIGWRAVVSPPDHPVSQYEFNVLVGADGKRNTLEGFKRKEFRGKLAIAITANFINKKTEAEARVEEISGVAFIFNQKFFKDLYAETGIDLENIVYYKDDTHYFVMTAKKQSLLDKGVILNDFADTARLLSQDNIDKEALKEYARQAADFSTEYNLPHLEFAVNHYGQSDVAMFDFTSMYAAENACRFLERNGHKLLMTLVGDSLLEPFWPTGSGCARGFLSSMDACWAIRSWAAGILNPIEVLAERESIYRILGQTTPENLHRDHASYSLDPTTRYPNLNQRTVLPVQVKGLYDTDDPS**************************************SESSIRAITSPPLSLSCSLDSLHEREVRAHS**KTGGLDEDISGRVRNLEEKFRGGVSPGRKPKDLYRAIGKIEKTDWNVKEIEKKIEENKYGK*****SERVPKWSKQQFEDKFSAVER*********

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		469	2.2.26 [Sep-21-2011]
Q86BA1		4723	Protein-methionine sulfox	yes	N/A	0.692	0.068	0.679	1e-133
G3MWR8		1960	Protein-methionine sulfox	yes	N/A	0.656	0.157	0.692	1e-130
Q7RTP6		2002	Protein-methionine sulfox	yes	N/A	0.658	0.154	0.687	1e-130
Q8CJ19		1993	Protein-methionine sulfox	yes	N/A	0.656	0.154	0.682	1e-130
F1QH17		1994	Protein-methionine sulfox	no	N/A	0.656	0.154	0.689	1e-128
F1QWK4		1673	Protein-methionine sulfox	no	N/A	0.648	0.181	0.672	1e-124
O94851		1124	Protein-methionine sulfox	no	N/A	0.637	0.266	0.676	1e-122
F1MF74		1101	Protein-methionine sulfox	no	N/A	0.637	0.271	0.673	1e-122
D4A1F2		961	Protein-methionine sulfox	no	N/A	0.637	0.311	0.683	1e-122
Q8BML1		960	Protein-methionine sulfox	no	N/A	0.637	0.311	0.68	1e-122

>sp\|Q86BA1\|MICAL_DROME Protein-methionine sulfoxide oxidase Mical OS=Drosophila melanogaster GN=Mical PE=1 SV=1	Back alignment and function desciption

 Score =  473 bits (1218), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 223/328 (67%), Positives = 265/328 (80%), Gaps = 3/328 (0%)

Query: 6   GWRAVVSPPDHPVSQYEFNVLVGADGKRNTLEGFKRKEFRGKLAIAITANFINKKTEAEA 65
           GWRA V+P DHPVS YEF+VL+GADGKRN L+ F+RKEFRGKLAIAITANFINKKTEAEA
Sbjct: 236 GWRAAVTPADHPVSHYEFDVLIGADGKRNMLD-FRRKEFRGKLAIAITANFINKKTEAEA 294

Query: 66  RVEEISGVAFIFNQKFFKDLYAETGIDLENIVYYKDDTHYFVMTAKKQSLLDKGVILNDF 125
           +VEEISGVAFIFNQ FFK+LY +TGIDLENIVYYKD+THYFVMTAKK SL+DKGVI+ D 
Sbjct: 295 KVEEISGVAFIFNQAFFKELYGKTGIDLENIVYYKDETHYFVMTAKKHSLIDKGVIIEDM 354

Query: 126 ADTARLLSQDNIDKEALKEYARQAADFSTEYNLPHLEFAVNHYGQSDVAMFDFTSMYAAE 185
           AD   LL+  N+D + L +YAR+AA+FST+Y +P+LEFAVNHYG+ DVAMFDFTSM+AAE
Sbjct: 355 ADPGELLAPANVDTQKLHDYAREAAEFSTQYQMPNLEFAVNHYGKPDVAMFDFTSMFAAE 414

Query: 186 NACRFLERNGHKLLMTLVGDSLLEPFWPTGSGCARGFLSSMDACWAIRSWAAGILNPIEV 245
            +CR + R G +L+  LVGDSLLEPFWPTGSGCARGFLSSMDA +AI+ W+    + + V
Sbjct: 415 MSCRVIVRKGARLMQCLVGDSLLEPFWPTGSGCARGFLSSMDAAYAIKLWSNPQNSTLGV 474

Query: 246 LAERESIYRILGQTTPENLHRDHASYSLDPTTRYPNLNQRTVLPVQVKGLYDTDDPSTLE 305
           LA+RESIYR+L QTTP+ L RD ++Y++DP TRYPNLN+ +V   QVK L DTDDPS LE
Sbjct: 475 LAQRESIYRLLNQTTPDTLQRDISAYTVDPATRYPNLNRESVNSWQVKHLVDTDDPSILE 534

Query: 306 LYLKAPSTLLAPGADQPKKRRRR--DLL 331
                   L  P  D P +R+RR  DLL
Sbjct: 535 QTFMDTHALQTPHLDTPGRRKRRSGDLL 562

Monooxygenase that promotes depolymerization of F-actin by mediating oxidation of specific methionine residues on actin. Acts by modifying actin subunits at 'Met-44' and 'Met-47' through the addition of oxygen to form methionine-sulfoxide, leading to promote actin filament severing and prevent repolymerization. Plays a key role in semaphorin-plexin repulsive axon guidance and cell morphological changes, probably via its ability to modify and regulate actin.
Drosophila melanogaster (taxid: 7227)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 3EC: .EC: -

>sp\|G3MWR8\|MICA3_BOVIN Protein-methionine sulfoxide oxidase MICAL3 OS=Bos taurus GN=MICAL3 PE=3 SV=1	Back alignment and function description

>sp\|Q7RTP6\|MICA3_HUMAN Protein-methionine sulfoxide oxidase MICAL3 OS=Homo sapiens GN=MICAL3 PE=1 SV=2	Back alignment and function description

>sp\|Q8CJ19\|MICA3_MOUSE Protein-methionine sulfoxide oxidase MICAL3 OS=Mus musculus GN=Mical3 PE=1 SV=2	Back alignment and function description

>sp\|F1QH17\|MCA3A_DANRE Protein-methionine sulfoxide oxidase mical3a OS=Danio rerio GN=mical3a PE=2 SV=2	Back alignment and function description

>sp\|F1QWK4\|MCA3B_DANRE Protein-methionine sulfoxide oxidase mical3b OS=Danio rerio GN=mical3b PE=2 SV=2	Back alignment and function description

>sp\|O94851\|MICA2_HUMAN Protein-methionine sulfoxide oxidase MICAL2 OS=Homo sapiens GN=MICAL2 PE=1 SV=1	Back alignment and function description

>sp\|F1MF74\|MICA2_BOVIN Protein-methionine sulfoxide oxidase MICAL2 OS=Bos taurus GN=MICAL2 PE=3 SV=2	Back alignment and function description

>sp\|D4A1F2\|MICA2_RAT Protein-methionine sulfoxide oxidase MICAL2 OS=Rattus norvegicus GN=Mical2 PE=2 SV=1	Back alignment and function description

>sp\|Q8BML1\|MICA2_MOUSE Protein-methionine sulfoxide oxidase MICAL2 OS=Mus musculus GN=Mical2 PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		469
328706346		2222	PREDICTED: hypothetical protein LOC10016	0.699	0.147	0.772	1e-154
380016801		3136	PREDICTED: uncharacterized protein LOC10	0.688	0.102	0.766	1e-151
383858301		2677	PREDICTED: protein-methionine sulfoxide	0.688	0.120	0.766	1e-151
328776125		2655	PREDICTED: hypothetical protein LOC41331	0.688	0.121	0.769	1e-151
340716919		2677	PREDICTED: hypothetical protein LOC10065	0.688	0.120	0.766	1e-151
350426821		2672	PREDICTED: hypothetical protein LOC10074	0.688	0.120	0.763	1e-151
322780790		3356	hypothetical protein SINV_01679 [Solenop	0.682	0.095	0.776	1e-151
242007332		803	protein MICAL-3, putative [Pediculus hum	0.690	0.403	0.757	1e-148
307186691		733	Protein MICAL-3 [Camponotus floridanus]	0.688	0.440	0.754	1e-146
321461663		800	hypothetical protein DAPPUDRAFT_605 [Dap	0.656	0.385	0.772	1e-143

>gi\|328706346\|ref\|XP_001949334.2\| PREDICTED: hypothetical protein LOC100168266 [Acyrthosiphon pisum]	Back alignment and taxonomy information

 Score =  550 bits (1417), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 254/329 (77%), Positives = 287/329 (87%)

Query: 1   DEEKIGWRAVVSPPDHPVSQYEFNVLVGADGKRNTLEGFKRKEFRGKLAIAITANFINKK 60
           ++EKIGWRA+ SP DHPVSQYEF+VL+GADGKRNTLEGFKRKEFRG+LAIAITANFINK 
Sbjct: 197 NDEKIGWRAIFSPSDHPVSQYEFDVLIGADGKRNTLEGFKRKEFRGRLAIAITANFINKH 256

Query: 61  TEAEARVEEISGVAFIFNQKFFKDLYAETGIDLENIVYYKDDTHYFVMTAKKQSLLDKGV 120
           TEAEARVEEISGVAFIFNQKFFKDLY ETGIDLENIVYYKD+THYFVMTAKK SL+DKGV
Sbjct: 257 TEAEARVEEISGVAFIFNQKFFKDLYRETGIDLENIVYYKDETHYFVMTAKKHSLIDKGV 316

Query: 121 ILNDFADTARLLSQDNIDKEALKEYARQAADFSTEYNLPHLEFAVNHYGQSDVAMFDFTS 180
           ILND+AD A+LL+ +NI+KEAL EYA++AA+FST Y+LP LEFAVNHYGQ DVAMFDFTS
Sbjct: 317 ILNDYADVAKLLALENINKEALTEYAKEAANFSTNYSLPQLEFAVNHYGQPDVAMFDFTS 376

Query: 181 MYAAENACRFLERNGHKLLMTLVGDSLLEPFWPTGSGCARGFLSSMDACWAIRSWAAGIL 240
           MYAAENA   ++RNGHKLL TLVGDSLLEPFWPTGSGCARGFLSSMD CWAI+ W +   
Sbjct: 377 MYAAENASHVIQRNGHKLLATLVGDSLLEPFWPTGSGCARGFLSSMDTCWAIKHWGSPDS 436

Query: 241 NPIEVLAERESIYRILGQTTPENLHRDHASYSLDPTTRYPNLNQRTVLPVQVKGLYDTDD 300
           NP++VLAERESIY ILGQTTPENL ++ A Y++DP TRYPNLN   VLPVQV  L+D DD
Sbjct: 437 NPLDVLAERESIYHILGQTTPENLQKNIAGYTVDPHTRYPNLNTHAVLPVQVVHLFDCDD 496

Query: 301 PSTLELYLKAPSTLLAPGADQPKKRRRRD 329
            + +E YLKAP   + P  D PKKRRR++
Sbjct: 497 KTVVEKYLKAPRQTITPVQDVPKKRRRKE 525

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi\|380016801\|ref\|XP_003692361.1\| PREDICTED: uncharacterized protein LOC100869779 [Apis florea]	Back alignment and taxonomy information

>gi\|383858301\|ref\|XP_003704640.1\| PREDICTED: protein-methionine sulfoxide oxidase Mical-like [Megachile rotundata]	Back alignment and taxonomy information

>gi\|328776125\|ref\|XP_396755.4\| PREDICTED: hypothetical protein LOC413310 isoform 1 [Apis mellifera]	Back alignment and taxonomy information

>gi\|340716919\|ref\|XP_003396938.1\| PREDICTED: hypothetical protein LOC100650962 [Bombus terrestris]	Back alignment and taxonomy information

>gi\|350426821\|ref\|XP_003494553.1\| PREDICTED: hypothetical protein LOC100744389 [Bombus impatiens]	Back alignment and taxonomy information

>gi\|322780790\|gb\|EFZ10019.1\| hypothetical protein SINV_01679 [Solenopsis invicta]	Back alignment and taxonomy information

>gi\|242007332\|ref\|XP_002424495.1\| protein MICAL-3, putative [Pediculus humanus corporis] gi\|212507913\|gb\|EEB11757.1\| protein MICAL-3, putative [Pediculus humanus corporis]	Back alignment and taxonomy information

>gi\|307186691\|gb\|EFN72163.1\| Protein MICAL-3 [Camponotus floridanus]	Back alignment and taxonomy information

>gi\|321461663\|gb\|EFX72693.1\| hypothetical protein DAPPUDRAFT_605 [Daphnia pulex]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		469
FB\|FBgn0053208		4723	Mical "Molecule interacting wi	0.673	0.066	0.684	5.4e-127
UNIPROTKB\|F1Q009		1821	MICAL3 "Uncharacterized protei	0.656	0.169	0.686	2.3e-116
UNIPROTKB\|E1BXR9		899	Gga.14596 "Uncharacterized pro	0.656	0.342	0.689	4.4e-116
UNIPROTKB\|E9PTS8		826	E9PTS8 "Uncharacterized protei	0.656	0.372	0.682	5.6e-116
UNIPROTKB\|G3MWR8		1960	MICAL3 "Protein-methionine sul	0.656	0.157	0.692	5.8e-116
UNIPROTKB\|Q7RTP6		2002	MICAL3 "Protein-methionine sul	0.658	0.154	0.687	6.4e-116
UNIPROTKB\|F1SHR1		1949	MICAL3 "Uncharacterized protei	0.656	0.158	0.689	1.2e-115
UNIPROTKB\|F1Q0K3		2016	MICAL3 "Uncharacterized protei	0.656	0.152	0.686	4.8e-115
MGI\|MGI:2442733		1993	Mical3 "microtubule associated	0.656	0.154	0.682	7.4e-115
ZFIN\|ZDB-GENE-050126-2		2269	mical3a "microtubule associate	0.656	0.135	0.689	8.5e-114

FB\|FBgn0053208 Mical "Molecule interacting with CasL" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

 Score = 1137 (405.3 bits), Expect = 5.4e-127, Sum P(2) = 5.4e-127
 Identities = 217/317 (68%), Positives = 257/317 (81%)

Query:     6 GWRAVVSPPDHPVSQYEFNVLVGADGKRNTLEGFKRKEFRGKLAIAITANFINKKTEAEA 65
             GWRA V+P DHPVS YEF+VL+GADGKRN L+ F+RKEFRGKLAIAITANFINKKTEAEA
Sbjct:   236 GWRAAVTPADHPVSHYEFDVLIGADGKRNMLD-FRRKEFRGKLAIAITANFINKKTEAEA 294

Query:    66 RVEEISGVAFIFNQKFFKDLYAETGIDLENIVYYKDDTHYFVMTAKKQSLLDKGVILNDF 125
             +VEEISGVAFIFNQ FFK+LY +TGIDLENIVYYKD+THYFVMTAKK SL+DKGVI+ D 
Sbjct:   295 KVEEISGVAFIFNQAFFKELYGKTGIDLENIVYYKDETHYFVMTAKKHSLIDKGVIIEDM 354

Query:   126 ADTARLLSQDNIDKEALKEYARQAADFSTEYNLPHLEFAVNHYGQSDVAMFDFTSMYAAE 185
             AD   LL+  N+D + L +YAR+AA+FST+Y +P+LEFAVNHYG+ DVAMFDFTSM+AAE
Sbjct:   355 ADPGELLAPANVDTQKLHDYAREAAEFSTQYQMPNLEFAVNHYGKPDVAMFDFTSMFAAE 414

Query:   186 NACRFLERNGHKLLMTLVGDSLLEPFWPTGSGCARGFLSSMDACWAIRSWAAGILNPIEV 245
              +CR + R G +L+  LVGDSLLEPFWPTGSGCARGFLSSMDA +AI+ W+    + + V
Sbjct:   415 MSCRVIVRKGARLMQCLVGDSLLEPFWPTGSGCARGFLSSMDAAYAIKLWSNPQNSTLGV 474

Query:   246 LAERESIYRILGQTTPENLHRDHASYSLDPTTRYPNLNQRTVLPVQVKGLYDTDDPSTLE 305
             LA+RESIYR+L QTTP+ L RD ++Y++DP TRYPNLN+ +V   QVK L DTDDPS LE
Sbjct:   475 LAQRESIYRLLNQTTPDTLQRDISAYTVDPATRYPNLNRESVNSWQVKHLVDTDDPSILE 534

Query:   306 LYLKAPSTLLAPGADQP 322
                     L  P  D P
Sbjct:   535 QTFMDTHALQTPHLDTP 551

GO:0003779 "actin binding" evidence=ISS;IDA

GO:0007411 "axon guidance" evidence=IMP;TAS

GO:0005829 "cytosol" evidence=NAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0043195 "terminal bouton" evidence=IDA

GO:0045214 "sarcomere organization" evidence=IMP

GO:0016322 "neuron remodeling" evidence=IGI;IMP

GO:0048813 "dendrite morphogenesis" evidence=IGI;IMP

GO:0030042 "actin filament depolymerization" evidence=IMP;IDA

GO:0019417 "sulfur oxidation" evidence=IDA

GO:0070995 "NADPH oxidation" evidence=IDA

GO:0043914 "NADPH:sulfur oxidoreductase activity" evidence=IDA

UNIPROTKB\|F1Q009 MICAL3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|E1BXR9 Gga.14596 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|E9PTS8 E9PTS8 "Uncharacterized protein" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|G3MWR8 MICAL3 "Protein-methionine sulfoxide oxidase MICAL3" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|Q7RTP6 MICAL3 "Protein-methionine sulfoxide oxidase MICAL3" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|F1SHR1 MICAL3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|F1Q0K3 MICAL3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

MGI\|MGI:2442733 Mical3 "microtubule associated monooxygenase, calponin and LIM domain containing 3" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-050126-2 mical3a "microtubule associated monooxygenase, calponin and LIM domain containing 3a" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8CJ19	MICA3_MOUSE	1, ., 1, 4, ., 1, 3, ., -	0.6828	0.6567	0.1545	yes	N/A
Q86BA1	MICAL_DROME	1, ., 1, 4, ., 1, 3, ., -	0.6798	0.6929	0.0688	yes	N/A
G3MWR8	MICA3_BOVIN	1, ., 1, 4, ., 1, 3, ., -	0.6925	0.6567	0.1571	yes	N/A
Q7RTP6	MICA3_HUMAN	1, ., 1, 4, ., 1, 3, ., -	0.6870	0.6588	0.1543	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		469
KOG1700\|consensus		200		99.49
PF01494		356	FAD_binding_3: FAD binding domain; InterPro: IPR00	93.64
PRK08244		493	hypothetical protein; Provisional	89.32
PRK06183		538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	89.13

>KOG1700\|consensus	Back alignment and domain information

Probab=99.49  E-value=3.9e-15  Score=139.38  Aligned_cols=145  Identities=19%  Similarity=0.001  Sum_probs=138.0

Q ss_pred             CCCccee-eEEEecCCCcccccCccceeeccceeeeeEEEecCCCcccccccccccchhHHhhHHHHHHhhhhcCCCccc
Q psy15764         17 PVSQYEF-NVLVGADGKRNTLEGFKRKEFRGKLAIAITANFINKKTEAEARVEEISGVAFIFNQKFFKDLYAETGIDLEN   95 (469)
Q Consensus        17 pvs~yEF-dVlIgAdG~rn~l~GF~rkEfRGKLAIgITaNFiN~~T~aEakVeEISGVA~IfNQ~FF~~L~~~tGIDLEN   95 (469)
                      .+.--++ ++.+.+.++.+..+||+.  +++..+++++.|++|.++.++++|.++++++.+++|++|..+.+.+|+++++
T Consensus        54 ~~~yc~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~c~~c~k~vy~~Ek~~~~~~~~  131 (200)
T KOG1700|consen   54 GVPYCKNCHVAQFGPKGGGFGKGFQK--AGGLGKDGKSLNESKPNQSAKFQVFAGEKEKCARCQKTVYPLEKVTGNGLEF  131 (200)
T ss_pred             cccccccchHhhhCcccccccccccc--cCCCCcccccccccccccchhHHhhhccccccccccceeeehHHHhhhhhhh
Confidence            3333344 999999999999999999  9999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCCceeeeeccccccccccccccccccchhhhccccCCCHHHHHHHHHHHhcccCCCCCCCccc
Q psy15764         96 IVYYKDDTHYFVMTAKKQSLLDKGVILNDFADTARLLSQDNIDKEALKEYARQAADFSTEYNLPHLEF  163 (469)
Q Consensus        96 IVYYKddTHYFVMTAKKqSLL~kGVi~qD~~d~~~LLs~~NV~~~aL~~yAreAAdFst~~~Lp~ldF  163 (469)
                      ++||.+++||++|+++|+....+||+..++.....++.+.|+++...+.+.++++++++..++|++++
T Consensus       132 hk~cfrc~~~~~~ls~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (200)
T KOG1700|consen  132 HKSCFRCTHCGKKLSPKNYAALEGVLYCKHHFAQLFKGKGNYNEGFGARENKEAAAAATAEPLPKLQP  199 (200)
T ss_pred             hhhheeecccccccCCcchhhcCCccccchhhheeecCCCcccccchhhhhhhhhhhhcccCCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999998876

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways	Back alignment and domain information

>PRK08244 hypothetical protein; Provisional	Back alignment and domain information

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		469
2bry_A		497	Crystal Structure Of The Native Monooxygenase Domai		3e-92
2bra_A		484	Structure Of N-Terminal Fad Binding Motif Of Mouse		9e-92

>pdb|2BRY|A Chain A, Crystal Structure Of The Native Monooxygenase Domain Of Mical At 1.45 A Resolution Length = 497

Back alignment and structure

Iteration: 1

Score = 335 bits (859), Expect = 3e-92, Method: Compositional matrix adjust. Identities = 172/296 (58%), Positives = 216/296 (72%), Gaps = 2/296 (0%) Query: 6 GWRAVVSP-PDHPVSQYEFNVLVGADGKRNTLEGFKRKEFRGKLAIAITANFINKKTEAE 64 GWRA + P P ++ YEF+VL+ A G + EGF +E RGKLAI ITANF+N +T E Sbjct: 201 GWRAQLQPNPPAQLASYEFDVLISAAGGKFVPEGFTIREMRGKLAIGITANFVNGRTVEE 260 Query: 65 ARVEEISGVAFIFNQKFFKDLYAETGIDLENIVYYKDDTHYFVMTAKKQSLLDKGVILND 124 +V EISGVA I+NQKFF+ L TGIDLENIVYYKD+THYFVMTAKKQ LL GV+ D Sbjct: 261 TQVPEISGVARIYNQKFFQSLLKATGIDLENIVYYKDETHYFVMTAKKQCLLRLGVLRQD 320 Query: 125 FADTARLLSQDNIDKEALKEYARQAADFSTEYNLPHLEFAVNHYGQSDVAMFDFTSMYAA 184 ++T +LL + N+ EAL+ +AR AADF+T L LEFA + G+ DVA FDFTSM A Sbjct: 321 LSETDQLLGKANVVPEALQRFARAAADFATHGKLGKLEFAQDARGRPDVAAFDFTSMMRA 380 Query: 185 ENACRFLERNGHKLLMTLVGDSLLEPFWPTGSGCARGFLSSMDACWAIRSWAAGILNPIE 244 E++ R E++G +LL+ LVGD L+EPFWP G+G ARGFL++ DA W ++ WA G P+E Sbjct: 381 ESSARVQEKHGARLLLGLVGDCLVEPFWPLGTGVARGFLAAFDAAWMVKRWAEGA-GPLE 439 Query: 245 VLAERESIYRILGQTTPENLHRDHASYSLDPTTRYPNLNQRTVLPVQVKGLYDTDD 300 VLAERES+Y++L QT+PEN+HR+ A Y LDP TRYPNLN R V P QV+ LYD D Sbjct: 440 VLAERESLYQLLSQTSPENMHRNVAQYGLDPATRYPNLNLRAVTPNQVQDLYDMMD 495

PyMOL of 2bry

>pdb|2BRA|A Chain A, Structure Of N-Terminal Fad Binding Motif Of Mouse Mical Length = 484

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		469
2bry_A		497	NEDD9 interacting protein with calponin homology a	1e-147
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-06

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A* Length = 497	Back alignment and structure

 Score =  428 bits (1102), Expect = e-147
 Identities = 171/301 (56%), Positives = 216/301 (71%), Gaps = 2/301 (0%)

Query: 2   EEKIGWRAVVSPPDH-PVSQYEFNVLVGADGKRNTLEGFKRKEFRGKLAIAITANFINKK 60
            +  GWRA + P     ++ YEF+VL+ A G +   EGF  +E RGKLAI ITANF+N +
Sbjct: 197 RKGSGWRAQLQPNPPAQLASYEFDVLISAAGGKFVPEGFTIREMRGKLAIGITANFVNGR 256

Query: 61  TEAEARVEEISGVAFIFNQKFFKDLYAETGIDLENIVYYKDDTHYFVMTAKKQSLLDKGV 120
           T  E +V EISGVA I+NQKFF+ L   TGIDLENIVYYKD+THYFVMTAKKQ LL  GV
Sbjct: 257 TVEETQVPEISGVARIYNQKFFQSLLKATGIDLENIVYYKDETHYFVMTAKKQCLLRLGV 316

Query: 121 ILNDFADTARLLSQDNIDKEALKEYARQAADFSTEYNLPHLEFAVNHYGQSDVAMFDFTS 180
           +  D ++T +LL + N+  EAL+ +AR AADF+T   L  LEFA +  G+ DVA FDFTS
Sbjct: 317 LRQDLSETDQLLGKANVVPEALQRFARAAADFATHGKLGKLEFAQDARGRPDVAAFDFTS 376

Query: 181 MYAAENACRFLERNGHKLLMTLVGDSLLEPFWPTGSGCARGFLSSMDACWAIRSWAAGIL 240
           M  AE++ R  E++G +LL+ LVGD L+EPFWP G+G ARGFL++ DA W ++ WA G  
Sbjct: 377 MMRAESSARVQEKHGARLLLGLVGDCLVEPFWPLGTGVARGFLAAFDAAWMVKRWAEG-A 435

Query: 241 NPIEVLAERESIYRILGQTTPENLHRDHASYSLDPTTRYPNLNQRTVLPVQVKGLYDTDD 300
            P+EVLAERES+Y++L QT+PEN+HR+ A Y LDP TRYPNLN R V P QV+ LYD  D
Sbjct: 436 GPLEVLAERESLYQLLSQTSPENMHRNVAQYGLDPATRYPNLNLRAVTPNQVQDLYDMMD 495

Query: 301 P 301
            
Sbjct: 496 K 496

PyMOL of 2bry

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		469
2bry_A		497	NEDD9 interacting protein with calponin homology a	100.0
3ihg_A		535	RDME; flavoenzyme, anthracycline, polyketide biosy	92.18
2d88_A		121	Protein mical-3; all alpha, calponin homology doma	92.04
2qa2_A		499	CABE, polyketide oxygenase CABE; FAD, angucycline,	88.84
1wyl_A		116	NEDD9 interacting protein with calponin homology a	83.82
1bkr_A		109	Spectrin beta chain; filamentous actin-binding dom	81.48
2d87_A		128	Smoothelin splice isoform L2; all alpha, calponin	81.38

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*	Back alignment and structure

Probab=100.00  E-value=9.7e-44  Score=355.02  Aligned_cols=297  Identities=58%  Similarity=0.958  Sum_probs=273.6

Q ss_pred             ccceEeecCC-CCCCCcceeeEEEecCCCcccccCccceeeccceeeeeEEEecCCCcccccccccccchhHHhhHHHHH
Q psy15764          5 IGWRAVVSPP-DHPVSQYEFNVLVGADGKRNTLEGFKRKEFRGKLAIAITANFINKKTEAEARVEEISGVAFIFNQKFFK   83 (469)
Q Consensus         5 ~GWrA~v~P~-~hpvs~yEFdVlIgAdG~rn~l~GF~rkEfRGKLAIgITaNFiN~~T~aEakVeEISGVA~IfNQ~FF~   83 (469)
                      .+|.+.+... +.....+++|.||+|+|.+..+.|+...++.|...++.++.+++..+..+..+++++|++++|||.||.
T Consensus       200 ~~~~v~~~~~~~g~~~~i~ad~VV~A~G~~S~~r~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~G~~~~~~~~~f~  279 (497)
T 2bry_A          200 SGWRAQLQPNPPAQLASYEFDVLISAAGGKFVPEGFTIREMRGKLAIGITANFVNGRTVEETQVPEISGVARIYNQKFFQ  279 (497)
T ss_dssp             CCBEEEEESCCCHHHHTCCBSEEEECCCTTCCCTTCEEEEEECSCCEEEEEEEECCCCHHHHTSCCBCC----CCSSHHH
T ss_pred             CEEEEEEEECCCCCEEEEEcCEEEECCCCCcccccccchhhcCceeEeeeeeeeeeccccccchhhcCceEEecChhhhH
Confidence            4688887543 332335789999999999999999999999999999999999999889999999999999999999999


Q ss_pred             HhhhhcCCCccccccccCCceeeeeccccccccccccccccccchhhhccccCCCHHHHHHHHHHHhcccCCCCCCCccc
Q psy15764         84 DLYAETGIDLENIVYYKDDTHYFVMTAKKQSLLDKGVILNDFADTARLLSQDNIDKEALKEYARQAADFSTEYNLPHLEF  163 (469)
Q Consensus        84 ~L~~~tGIDLENIVYYKddTHYFVMTAKKqSLL~kGVi~qD~~d~~~LLs~~NV~~~aL~~yAreAAdFst~~~Lp~ldF  163 (469)
                      +++.++|||++||+|+.+++||||||+++++++..||+..+++....|+...|++++.++.|+++.++|++....+.+.|
T Consensus       280 ~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (497)
T 2bry_A          280 SLLKATGIDLENIVYYKDETHYFVMTAKKQCLLRLGVLRQDLSETDQLLGKANVVPEALQRFARAAADFATHGKLGKLEF  359 (497)
T ss_dssp             HHHHHHCCCEEEEEEEESSEEEEEEEECHHHHHHTTSBSSCCSSHHHHTSTTTBCHHHHHHHHHHHHHHHTTTTTCSCCB
T ss_pred             hHHhhcCCCcccccccCCCeEEEEeccccccccccceeeccccchHhhhhhccCCHHHHHHhhccccccchhhccccchh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999988889999


Q ss_pred             ccccCCCCccccccccchhhhhhhhhhhhhcCceEEEEeccCccCCCcccCCccccccccccccHHHHHHHHhcCCCCch
Q psy15764        164 AVNHYGQSDVAMFDFTSMYAAENACRFLERNGHKLLMTLVGDSLLEPFWPTGSGCARGFLSSMDACWAIRSWAAGILNPI  243 (469)
Q Consensus       164 A~Nh~GqpDVamFDFTSm~aaenAa~v~er~G~kLLv~LVGDsLlEPFWP~GtG~aRGFLsa~DaaWmvr~~~~G~~~pl  243 (469)
                      +..+.|.|++.+||+++++.-...+++.++.++.-.+.|+||+.+.||||.|.|++.|+..|++.+|++..|..|. ++.
T Consensus       360 ~~~~~g~~~~~~~~~~~~~~~~~~~r~a~~~~~gRr~~l~Gda~~~~~~p~g~G~n~g~~~a~~l~~~l~~~~~g~-~~~  438 (497)
T 2bry_A          360 AQDARGRPDVAAFDFTSMMRAESSARVQEKHGARLLLGLVGDCLVEPFWPLGTGVARGFLAAFDAAWMVKRWAEGA-GPL  438 (497)
T ss_dssp             CBCTTSSBCEEEEECSEEEEESCSEEEEEETTEEEEEEECGGGTBCCCGGGCCHHHHHHHHHHHHHHHHHHHHTTC-CHH
T ss_pred             hhhccCCCCCceeeeEEEEecchhhHHHHhcCCcccceEeccccccCcCccccchhhHHHHHHHHHHHHHHHhCCC-Ccc
Confidence            9999999999999999999888889999998887779999999999999999999999999999999999998884 788


Q ss_pred             hhhHhHHHHHHHhcCCCCcccccCCCCCCCCCCCCCCCCcccccCCcccccccccCCCc
Q psy15764        244 EVLAERESIYRILGQTTPENLHRDHASYSLDPTTRYPNLNQRTVLPVQVKGLYDTDDPS  302 (469)
Q Consensus       244 evLAEREsiY~lL~qttpenl~kn~~~YtiDP~TRY~nln~~~v~p~qVr~Ly~~~~~~  302 (469)
                      ++|+||+.+|+.|.|+|+++++|++..|++||.|||||.+..+.+|.+|.+||+..+.+
T Consensus       439 ~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~r~~~~~~l~~~~~~~  497 (497)
T 2bry_A          439 EVLAERESLYQLLSQTSPENMHRNVAQYGLDPATRYPNLNLRAVTPNQVQDLYDMMDKE  497 (497)
T ss_dssp             HHHHHHHHHHTTGGGCCTTTSCSCGGGCCSSGGGTSSSCCTTSSCGGGGGGGEEECSCC
T ss_pred             chhhhHHHHhhhhhhcCHHHHhhhHHhhcCCCcCcCCCcccccccCCccCccccccCCC
Confidence            99999999999999999999999999999999999999999999999999999998753

PyMOL of 2bry

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}	Back alignment and structure

>2d88_A Protein mical-3; all alpha, calponin homology domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2e9k_A	Back alignment and structure

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}	Back alignment and structure

>1wyl_A NEDD9 interacting protein with calponin homology and LIM domains; CH domain, mical, structural genomics; NMR {Homo sapiens} PDB: 2dk9_A	Back alignment and structure

>1bkr_A Spectrin beta chain; filamentous actin-binding domain, cytoskeleton; 1.10A {Homo sapiens} SCOP: a.40.1.1 PDB: 1aa2_A	Back alignment and structure

>2d87_A Smoothelin splice isoform L2; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2jv9_A 2k3s_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		469
d1rt8a_		505	a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinkin	2e-10

>d1rt8a_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 505	Back information, alignment and structure


class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 60.8 bits (147), Expect = 2e-10
 Identities = 16/129 (12%), Positives = 32/129 (24%), Gaps = 2/129 (1%)

Query: 202 LVGDSLLEPFWPTGSGCARGFLSSMDACWAIR--SWAAGILNPIEVLAERESIYRILGQT 259
           L GD  +    P  +     F    D     +  + +        VL ++ +   +    
Sbjct: 17  LAGDPDVGSRVPINTETFEFFDQCKDGLILSKLINDSVPDTIDERVLNKQRNNKPLDNFK 76

Query: 260 TPENLHRDHASYSLDPTTRYPNLNQRTVLPVQVKGLYDTDDPSTLELYLKAPSTLLAPGA 319
             EN +    S          N+    +L  +   +            L      L P  
Sbjct: 77  CIENNNVVINSAKAMGGISITNIGAGDILEGREHLILGLVWQIIRRGLLGKIDITLHPEL 136

Query: 320 DQPKKRRRR 328
            +  +    
Sbjct: 137 YRLLEEDET 145

PyMOL of d1rt8a_

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		469
d1rt8a_		505	Fimbrin (Plastin), actin-crosslinking domain {Fiss	96.27

>d1rt8a_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}	Back information, alignment and structure

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=96.27  E-value=1.8e-05  Score=78.61  Aligned_cols=89  Identities=15%  Similarity=-0.019  Sum_probs=65.3

Q ss_pred             EeccCccCCCcccCCccccccccccccHHHHHHH--HhcCCCCchhhhHhHHHHHHHhcCCCCcccccCCCCCCCCCCCC
Q psy15764        201 TLVGDSLLEPFWPTGSGCARGFLSSMDACWAIRS--WAAGILNPIEVLAERESIYRILGQTTPENLHRDHASYSLDPTTR  278 (469)
Q Consensus       201 ~LVGDsLlEPFWP~GtG~aRGFLsa~DaaWmvr~--~~~G~~~plevLAEREsiY~lL~qttpenl~kn~~~YtiDP~TR  278 (469)
                      .|.+|+.++++||++..+...|....|+.+.++-  +..|.+-+..+|+.++..+.++.+...+|+++-+..+..++..+
T Consensus        16 ~L~~~~~l~~~~p~~~~v~dL~~dl~DG~~L~~Lle~l~~~~i~~~~l~~~~~~~~~~~~~~leNv~~aL~~~k~~~~~~   95 (505)
T d1rt8a_          16 VLAGDPDVGSRVPINTETFEFFDQCKDGLILSKLINDSVPDTIDERVLNKQRNNKPLDNFKCIENNNVVINSAKAMGGIS   95 (505)
T ss_dssp             HHTTCTTTGGGCSCCTTSTHHHHHTTTSHHHHHHHHHHSTTSSCGGGSCCCC---CCCHHHHHHHHHHHHHHHHHHSSCC
T ss_pred             HhccCccccccCCCCcchhhHHHHHhhHHHHHHHHHHHcCCCcchhhhcccccccchhhhhHHHHHHHHHHHHHhcCCce
Confidence            3688999999999999999999999999887764  34454456677887777676666666778888777666667778


Q ss_pred             CCCCcccccCC
Q psy15764        279 YPNLNQRTVLP  289 (469)
Q Consensus       279 Y~nln~~~v~p  289 (469)
                      +.|++...+-.
T Consensus        96 ~~nI~~~dI~d  106 (505)
T d1rt8a_          96 ITNIGAGDILE  106 (505)
T ss_dssp             CSSCCHHHHHT
T ss_pred             eeccCcccccc
Confidence            88776554433

PyMOL of d1rt8a_