Psyllid ID: psy15771

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-----
Protein Sequence
MLRNALRCSVALRGALMSMPSKHMRLMTTAATTANTTEARPTIRKPIDEVARSHLVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVNLVDIAGMDVPSRPNRFEIIYNLLSLRYNSRIRVKTYTDELTPLDSANEVFKAANWYEREIWDMFGVYFSNHPDLRRILTDYGFEGHPFRKDFPLSGYVEVRYDDEKKRVVVEPLELAQEFRKFQLETPWEQFPNFRNTPGSSGSEEIPLDEKKEEEKK
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccEEEEEEEEccEEEEEEccccHHHHHHHHHcccccccccccccEEEEcccccccEEEEEEccccccccEEEEEEEccccccccccccccccccccccccEEEEEEEEccccccccccccccccccccccccccccccEEEcccccccEEEccccccHHHHccccccccccccccccccccccccccccccccHHHcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHccccccccHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHcccHEEEEEEEEccEEEEEEcccccEEEEHHEcccccccEEEEEEEEEEcccccHHHEEEEEEHcccccccEEEEEEEccccccccccccHcHHHHHHHHHHHHHHHHHEcccccHHHHHHHccccccccccccccccEEEEEEcccccEEEEcHHHHHHHHHccccccccccccccccccccccccccccccccHHccc
Coil and Loop (DISEMBL)
MLRNALRCSVALRGAlmsmpskhMRLMTTAAttanttearptirkpiDEVARSHLVDFGKYCAEILPKYIEKVQitsgdelelliipegvvpvLQFLKDHHTAQFVNLVdiagmdvpsrpnRFEIIYNLLSLRynsrirvktytdeltpldsaNEVFKAANWYEREIWDMFGvyfsnhpdlRRILtdygfeghpfrkdfplsgyvevryddekkrvVVEPLELAQEFRKFqletpweqfpnfrntpgssgseeipldekkeeekk
Flexible Loop (DISEMBL)
mlrnalrcSVALRGAlmsmpskhMRLMTTAattanttearptirkpideVARSHLVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVNLVDIAGMDVPSRPNRFEIIYNLLSLRYNSRIRVKTytdeltpldsaneVFKAANWYEREIWDMFGVYFSNHPDLRRILTDYGFeghpfrkdfplsgyVEVRYDDEKKRVVVEPLELAQEFRKfqletpweqfpnfrntpgssgseeipldekkeeekk
Low Complexity Region (SEG)
MLRNALRCSVALRGALMSMPSKHMRLMttaattanttearptIRKPIDEVARSHLVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVNLVDIAGMDVPSRPNRFEIIYNLLSLRYNSRIRVKTYTDELTPLDSANEVFKAANWYEREIWDMFGVYFSNHPDLRRILTDYGFEGHPFRKDFPLSGYVEVRYDDEKKRVVVEPLELAQEFRKFQLETPWEQFPNFRNTPGSSGSEEIPLDekkeeekk
Disordered region (IsUnstruct)
************************************************EVARSHLVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVNLVDIAGMDVPSRPNRFEIIYNLLSLRYNSRIRVKTYTDELTPLDSANEVFKAANWYEREIWDMFGVYFSNHPDLRRILTDYGFEGHPFRKDFPLSGYVEVRYDDEKKRVVVEPLELAQEFRKFQLETPWEQF**************************
Disordered Region (DISOPRED)
********************************************KPIDEVARSHLVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVNLVDIAGMDVPSRPNRFEIIYNLLSLRYNSRIRVKTYTDELTPLDSANEVFKAANWYEREIWDMFGVYFSNHPDLRRILTDYGFEGHPFRKDFPLSGYVEVRYDDEKKRVVVEPLELAQEFRKFQLETPWEQFPNFRNTPGSSGS**************
Disordered Region (DISEMBL)
MLRNALRCSVALRGALMSMPSKHMRLMTTAATTANTTEARPTIRKPIDEVARSHLVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVNLVDIAGMDVPSRPNRFEIIYNLLSLRYNSRIRVKTYTDELTPLDSANEVFKAANWYEREIWDMFGVYFSNHPDLRRILTDYGFEGHPFRKDFPLSGYVEVRYDDEKKRVVVEPLELAQEFRKFQLETPWEQFPNFRN*********************
Disordered Region (DISPRO)
*LRNALRCSVALRGALMS********************ARPTIRKPIDEVARSHLVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVNLVDIAGMDVPSRPNRFEIIYNLLSLRYNSRIRVKTYTDELTPLDSANEVFKAANWYEREIWDMFGVYFSNHPDLRRILTDYGFEGHPFRKDFPLSGYVEVRYDDEKKRVVVEPLELAQEFRKFQLETPWEQFPN************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLRNALRCSVALRGALMSMPSKHMRLMTTAATTANTTEARPTIRKPIDEVARSHLVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVNLVDIAGMDVPSRPNRFEIIYNLLSLRYNSRIRVKTYTDELTPLDSANEVFKAANWYEREIWDMFGVYFSNHPDLRRILTDYGFEGHPFRKDFPLSGYVEVRYDDEKKRVVVEPLELAQEFRKFQLETPWEQFPNFRNTPGSSGSEEIPLDEKKEEEKK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	265	2.2.26 [Sep-21-2011]
Q0MQG6	263	NADH dehydrogenase [ubiqu	N/A	N/A	0.905	0.912	0.654	2e-89
Q0MQG7	263	NADH dehydrogenase [ubiqu	N/A	N/A	0.905	0.912	0.654	2e-89
O75489	264	NADH dehydrogenase [ubiqu	yes	N/A	0.905	0.909	0.650	5e-89
Q0MQG8	264	NADH dehydrogenase [ubiqu	yes	N/A	0.905	0.909	0.650	7e-89
P23709	266	NADH dehydrogenase [ubiqu	yes	N/A	0.898	0.894	0.629	2e-88
Q9DCT2	263	NADH dehydrogenase [ubiqu	yes	N/A	0.901	0.908	0.623	3e-85
O21271	204	NADH-ubiquinone oxidoredu	N/A	N/A	0.690	0.897	0.608	1e-64
P23710	283	NADH-ubiquinone oxidoredu	N/A	N/A	0.966	0.904	0.451	1e-60
P34944	195	NADH dehydrogenase [ubiqu	N/A	N/A	0.679	0.923	0.613	3e-60
Q00673	276	Probable NADH-ubiquinone	N/A	N/A	0.792	0.760	0.518	9e-60

>sp|Q0MQG6|NDUS3_PONPY NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial OS=Pongo pygmaeus GN=NDUFS3 PE=2 SV=1

 Score =  328 bits (842), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 161/246 (65%), Positives = 193/246 (78%), Gaps = 6/246 (2%)

Query: 3   RNALRCSVALRGALMSMPSKHMRLMTTAATTANTTEARPTIRKPIDEVARSHLVDFGKYC 62
           R  L  S   RGA    PS  +  +   +  A+T   RPT+R P ++VA   L  FG+Y 
Sbjct: 11  RGLLGASALTRGA--GRPSVLLLPVRRESAGADT---RPTVR-PRNDVAHQQLSAFGEYV 64

Query: 63  AEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVNLVDIAGMDVPSRPNR 122
           AEILPKY+++VQ++  +ELE+ I P+GV+PVL FL+DH  AQF +LVD+  +DVP+R NR
Sbjct: 65  AEILPKYVQQVQVSCFNELEVCIHPDGVIPVLTFLRDHTNAQFKSLVDLTAVDVPTRQNR 124

Query: 123 FEIIYNLLSLRYNSRIRVKTYTDELTPLDSANEVFKAANWYEREIWDMFGVYFSNHPDLR 182
           FEI+YNLLSLR+NSRIRVKTYTDELTP++SA  VFKAANWYEREIWDMFGV+F+NHPDLR
Sbjct: 125 FEIVYNLLSLRFNSRIRVKTYTDELTPIESAVSVFKAANWYEREIWDMFGVFFANHPDLR 184

Query: 183 RILTDYGFEGHPFRKDFPLSGYVEVRYDDEKKRVVVEPLELAQEFRKFQLETPWEQFPNF 242
           RILTDYGFEGHPFRKDFPLSGYVE+RYDDE KRVV EP+ELAQEFRKF L +PWE FP +
Sbjct: 185 RILTDYGFEGHPFRKDFPLSGYVELRYDDEVKRVVAEPVELAQEFRKFDLNSPWEAFPVY 244

Query: 243 RNTPGS 248
           R  P S
Sbjct: 245 RQPPES 250

Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.
Pongo pygmaeus (taxid: 9600)
EC: 1EC: .EC: 6EC: .EC: 9EC: 9EC: .EC: 3

>sp|Q0MQG7|NDUS3_GORGO NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial OS=Gorilla gorilla gorilla GN=NDUFS3 PE=2 SV=1

 Score =  328 bits (842), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 161/246 (65%), Positives = 193/246 (78%), Gaps = 6/246 (2%)

Query: 3   RNALRCSVALRGALMSMPSKHMRLMTTAATTANTTEARPTIRKPIDEVARSHLVDFGKYC 62
           R  L  S   RGA    PS  +  +   +  A+T   RPT+R P ++VA   L  FG+Y 
Sbjct: 11  RGLLGASALTRGA--GRPSVLLLPVRRESAGADT---RPTVR-PRNDVAHKQLSAFGEYV 64

Query: 63  AEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVNLVDIAGMDVPSRPNR 122
           AEILPKY+++VQ++  +ELE+ I P+GV+PVL FL+DH  AQF +LVD+  +DVP+R NR
Sbjct: 65  AEILPKYVQQVQVSCFNELEVCIHPDGVIPVLTFLRDHTNAQFKSLVDLTAVDVPTRQNR 124

Query: 123 FEIIYNLLSLRYNSRIRVKTYTDELTPLDSANEVFKAANWYEREIWDMFGVYFSNHPDLR 182
           FEI+YNLLSLR+NSRIRVKTYTDELTP++SA  VFKAANWYEREIWDMFGV+F+NHPDLR
Sbjct: 125 FEIVYNLLSLRFNSRIRVKTYTDELTPIESAVSVFKAANWYEREIWDMFGVFFANHPDLR 184

Query: 183 RILTDYGFEGHPFRKDFPLSGYVEVRYDDEKKRVVVEPLELAQEFRKFQLETPWEQFPNF 242
           RILTDYGFEGHPFRKDFPLSGYVE+RYDDE KRVV EP+ELAQEFRKF L +PWE FP +
Sbjct: 185 RILTDYGFEGHPFRKDFPLSGYVELRYDDEVKRVVAEPVELAQEFRKFDLNSPWEAFPVY 244

Query: 243 RNTPGS 248
           R  P S
Sbjct: 245 RQPPES 250

Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Gorilla gorilla gorilla (taxid: 9595)

EC: 1

EC: .

EC: 6

EC: .

EC: 9

EC: 9

EC: .

EC: 3

>sp|O75489|NDUS3_HUMAN NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial OS=Homo sapiens GN=NDUFS3 PE=1 SV=1

 Score =  327 bits (838), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 160/246 (65%), Positives = 192/246 (78%), Gaps = 6/246 (2%)

Query: 3   RNALRCSVALRGALMSMPSKHMRLMTTAATTANTTEARPTIRKPIDEVARSHLVDFGKYC 62
           R  L  S   RG     PS  +  +   +  A+T   RPT+R P ++VA   L  FG+Y 
Sbjct: 12  RGILGASALTRGT--GRPSVLLLPVRRESAGADT---RPTVR-PRNDVAHKQLSAFGEYV 65

Query: 63  AEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVNLVDIAGMDVPSRPNR 122
           AEILPKY+++VQ++  +ELE+ I P+GV+PVL FL+DH  AQF +LVD+  +DVP+R NR
Sbjct: 66  AEILPKYVQQVQVSCFNELEVCIHPDGVIPVLTFLRDHTNAQFKSLVDLTAVDVPTRQNR 125

Query: 123 FEIIYNLLSLRYNSRIRVKTYTDELTPLDSANEVFKAANWYEREIWDMFGVYFSNHPDLR 182
           FEI+YNLLSLR+NSRIRVKTYTDELTP++SA  VFKAANWYEREIWDMFGV+F+NHPDLR
Sbjct: 126 FEIVYNLLSLRFNSRIRVKTYTDELTPIESAVSVFKAANWYEREIWDMFGVFFANHPDLR 185

Query: 183 RILTDYGFEGHPFRKDFPLSGYVEVRYDDEKKRVVVEPLELAQEFRKFQLETPWEQFPNF 242
           RILTDYGFEGHPFRKDFPLSGYVE+RYDDE KRVV EP+ELAQEFRKF L +PWE FP +
Sbjct: 186 RILTDYGFEGHPFRKDFPLSGYVELRYDDEVKRVVAEPVELAQEFRKFDLNSPWEAFPVY 245

Query: 243 RNTPGS 248
           R  P S
Sbjct: 246 RQPPES 251

Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 6

EC: .

EC: 9

EC: 9

EC: .

EC: 3

>sp|Q0MQG8|NDUS3_PANTR NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial OS=Pan troglodytes GN=NDUFS3 PE=2 SV=1

 Score =  327 bits (837), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 160/246 (65%), Positives = 192/246 (78%), Gaps = 6/246 (2%)

Query: 3   RNALRCSVALRGALMSMPSKHMRLMTTAATTANTTEARPTIRKPIDEVARSHLVDFGKYC 62
           R  L  S   RG     PS  +  +   +  A+T   RPT+R P ++VA   L  FG+Y 
Sbjct: 12  RGILGASALTRGT--GRPSVLLLPVRRESAGADT---RPTVR-PRNDVAHKQLSAFGEYV 65

Query: 63  AEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVNLVDIAGMDVPSRPNR 122
           AEILPKY+++VQ++  +ELE+ I P+GV+PVL FL+DH  AQF +LVD+  +DVP+R NR
Sbjct: 66  AEILPKYVQQVQVSCFNELEVCIHPDGVIPVLTFLRDHTNAQFKSLVDLTAVDVPTRQNR 125

Query: 123 FEIIYNLLSLRYNSRIRVKTYTDELTPLDSANEVFKAANWYEREIWDMFGVYFSNHPDLR 182
           FEI+YNLLSLR+NSRIRVKTYTDELTP++SA  VFKAANWYEREIWDMFGV+F+NHPDLR
Sbjct: 126 FEIVYNLLSLRFNSRIRVKTYTDELTPIESAVSVFKAANWYEREIWDMFGVFFANHPDLR 185

Query: 183 RILTDYGFEGHPFRKDFPLSGYVEVRYDDEKKRVVVEPLELAQEFRKFQLETPWEQFPNF 242
           RILTDYGFEGHPFRKDFPLSGYVE+RYDDE KRVV EP+ELAQEFRKF L +PWE FP +
Sbjct: 186 RILTDYGFEGHPFRKDFPLSGYVELRYDDEVKRVVAEPVELAQEFRKFDLNSPWEAFPVY 245

Query: 243 RNTPGS 248
           R  P S
Sbjct: 246 RQPPES 251

Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Pan troglodytes (taxid: 9598)

EC: 1

EC: .

EC: 6

EC: .

EC: 9

EC: 9

EC: .

EC: 3

>sp|P23709|NDUS3_BOVIN NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial OS=Bos taurus GN=NDUFS3 PE=1 SV=1

 Score =  325 bits (832), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 156/248 (62%), Positives = 197/248 (79%), Gaps = 10/248 (4%)

Query: 1   MLRNALRCSVALRGALMSMPSKHMRLMTTAATTANTTEARPTIRKPIDEVARSHLVDFGK 60
           ++ +A    VA R +++ +P   +R  ++AA T      RPT+R P ++VA   L  FG+
Sbjct: 16  LVGSAAPARVAGRPSVLLLP---VRRESSAADT------RPTVR-PRNDVAHKQLSAFGE 65

Query: 61  YCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVNLVDIAGMDVPSRP 120
           Y AEILPKY+++VQ++  +ELE+ I P+GV+PVL FL+DH  AQF +L D+  +D+P+R 
Sbjct: 66  YVAEILPKYVQQVQVSCFNELEICIHPDGVIPVLTFLRDHSNAQFKSLADLTAVDIPTRQ 125

Query: 121 NRFEIIYNLLSLRYNSRIRVKTYTDELTPLDSANEVFKAANWYEREIWDMFGVYFSNHPD 180
           NRFEI+YNLLSLR+NSRIRVKTYTDELTP++S+  V+KAANWYEREIWDMFGV+F+NHPD
Sbjct: 126 NRFEIVYNLLSLRFNSRIRVKTYTDELTPIESSVPVYKAANWYEREIWDMFGVFFANHPD 185

Query: 181 LRRILTDYGFEGHPFRKDFPLSGYVEVRYDDEKKRVVVEPLELAQEFRKFQLETPWEQFP 240
           LRRILTDYGFEGHPFRKDFPLSGYVE+RYDDE KRVV EP+ELAQEFRKF L +PWE FP
Sbjct: 186 LRRILTDYGFEGHPFRKDFPLSGYVELRYDDEVKRVVAEPVELAQEFRKFDLNSPWEAFP 245

Query: 241 NFRNTPGS 248
            +R  P S
Sbjct: 246 AYRQPPES 253

Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: 6

EC: .

EC: 9

EC: 9

EC: .

EC: 3

>sp|Q9DCT2|NDUS3_MOUSE NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial OS=Mus musculus GN=Ndufs3 PE=1 SV=2

 Score =  315 bits (806), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 154/247 (62%), Positives = 186/247 (75%), Gaps = 8/247 (3%)

Query: 3   RNALRCSVALRGALM-SMPSKHMRLMTTAATTANTTEARPTIRKPIDEVARSHLVDFGKY 61
           R  L  +   RGA   S+  +H+R  + AA      + RPT+R P  +V    L  FG+Y
Sbjct: 11  RGLLGAASVGRGAGRPSVLWQHVRRESAAA------DKRPTVR-PRSDVTHKQLSAFGEY 63

Query: 62  CAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVNLVDIAGMDVPSRPN 121
            AEILPKY+++VQ++  DELE+ I P+GV+P L FL+DH  AQF +L D+  +DVP+R N
Sbjct: 64  VAEILPKYVQQVQVSCLDELEICIHPDGVIPTLTFLRDHTNAQFKSLADLTAVDVPTRQN 123

Query: 122 RFEIIYNLLSLRYNSRIRVKTYTDELTPLDSANEVFKAANWYEREIWDMFGVYFSNHPDL 181
           RFEI+YNLLSLR+NSRIRVKTY DELTP+DS   V  AANWYERE+WDMFGV+F NHPDL
Sbjct: 124 RFEIVYNLLSLRFNSRIRVKTYADELTPIDSIVSVHIAANWYEREVWDMFGVFFFNHPDL 183

Query: 182 RRILTDYGFEGHPFRKDFPLSGYVEVRYDDEKKRVVVEPLELAQEFRKFQLETPWEQFPN 241
           RRILTDYGFEGHPFRKDFPL+GYVE+RYDDE KRVV EP+ELAQEFRKF L +PWE FP 
Sbjct: 184 RRILTDYGFEGHPFRKDFPLTGYVELRYDDEVKRVVAEPVELAQEFRKFDLNSPWEAFPA 243

Query: 242 FRNTPGS 248
           +R  P S
Sbjct: 244 YRQPPES 250

Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 6

EC: .

EC: 9

EC: 9

EC: .

EC: 3

>sp|O21271|NDUS3_RECAM NADH-ubiquinone oxidoreductase subunit 9 OS=Reclinomonas americana GN=NAD9 PE=3 SV=1

 Score =  246 bits (629), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 112/184 (60%), Positives = 141/184 (76%), Gaps = 1/184 (0%)

Query: 55  LVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVNLVDIAGM 114
           L +FG    ++ PKYI+K  I S  EL L + P  ++ +++ LK+H   QF +L D+  +
Sbjct: 10  LKEFGISLIKMFPKYIDKA-IYSKGELTLHVKPTNLIALMKILKNHTNCQFKSLSDLCAV 68

Query: 115 DVPSRPNRFEIIYNLLSLRYNSRIRVKTYTDELTPLDSANEVFKAANWYEREIWDMFGVY 174
           D P +  RFEI+YNLLS+RYNSRIRVKT+ DELTP+ S   +F+AA W+ERE+WD+FGVY
Sbjct: 69  DFPEKKERFEIVYNLLSVRYNSRIRVKTFVDELTPVPSVTCLFQAAGWFEREVWDLFGVY 128

Query: 175 FSNHPDLRRILTDYGFEGHPFRKDFPLSGYVEVRYDDEKKRVVVEPLELAQEFRKFQLET 234
           F+NHPDLRRILTDYGFEGHP RKDFPL+GYVEVRYDDE+KRVV E LE+ QEFR F   +
Sbjct: 129 FTNHPDLRRILTDYGFEGHPMRKDFPLTGYVEVRYDDEQKRVVTESLEMTQEFRSFNFTS 188

Query: 235 PWEQ 238
           PWEQ
Sbjct: 189 PWEQ 192

Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Reclinomonas americana (taxid: 48483)

EC: 1

EC: .

EC: 6

EC: .

EC: 9

EC: 9

EC: .

EC: 3

>sp|P23710|NDUS3_NEUCR NADH-ubiquinone oxidoreductase 30.4 kDa subunit, mitochondrial OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=nuo-31 PE=2 SV=2

 Score =  233 bits (594), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 125/277 (45%), Positives = 171/277 (61%), Gaps = 21/277 (7%)

Query: 9   SVALRGALMSM-PSKHMR-LMTTAATTANTTEA---RPTIRKPIDEVARSHLVD------ 57
           S AL  AL S  PS  +R L TT+    N  E    R   R+P+     + +V+      
Sbjct: 8   SRALASALRSAKPSPAIRCLATTSRNLINMPEGPNPRQFPREPLPGALNAAVVNPADKYQ 67

Query: 58  --------FGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVNLV 109
                   +G +    LPKYI++  +   DEL + I P GV+PV  FLK +  A++  + 
Sbjct: 68  SKADNLHKYGSWLMGCLPKYIQQFSVWK-DELTIYISPAGVIPVFSFLKYNTAAEYTQVS 126

Query: 110 DIAGMDVPSRPNRFEIIYNLLSLRYNSRIRVKTYTDELTPLDSANEVFKAANWYEREIWD 169
           DI  +D P++  RFE++YNLLS+R+NSRIRVKTY DE++P+ S   ++  ANWYERE++D
Sbjct: 127 DITAVDFPTKDQRFEVVYNLLSVRHNSRIRVKTYADEVSPVPSITPLYDGANWYEREVYD 186

Query: 170 MFGVYFSNHPDLRRILTDYGFEGHPFRKDFPLSGYVEVRYDDEKKRVVVEPLELAQEFRK 229
           +FGV+F+ HPDLRRI+TDYGF+GHP RKDFP++GY E+RYD+EKKR+V EPLE+ Q FR 
Sbjct: 187 LFGVFFTGHPDLRRIMTDYGFDGHPLRKDFPMTGYTEIRYDEEKKRIVTEPLEMTQAFRN 246

Query: 230 FQ-LETPWEQFPNFRNTPGSSGSEEIPLDEKKEEEKK 265
           F+   + WEQ     +    S     P  E K EEKK
Sbjct: 247 FEGGSSAWEQVGAGIDRKPESFKLPTPKPETKPEEKK 283

Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

EC: 1

EC: .

EC: 6

EC: .

EC: 9

EC: 9

EC: .

EC: 3

>sp|P34944|NDUS3_MARPO NADH dehydrogenase [ubiquinone] iron-sulfur protein 3 OS=Marchantia polymorpha GN=NAD9 PE=3 SV=2

 Score =  232 bits (591), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 111/181 (61%), Positives = 131/181 (72%), Gaps = 1/181 (0%)

Query: 58  FGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVNLVDIAGMDVP 117
           F K     LPK+I K Q TS  E  L   P  +  +L FLK H   +F  L+DI G+D P
Sbjct: 6   FFKSLIATLPKWIHKCQ-TSKHENILYTNPNSLFQLLYFLKYHTNTRFKVLIDICGVDYP 64

Query: 118 SRPNRFEIIYNLLSLRYNSRIRVKTYTDELTPLDSANEVFKAANWYEREIWDMFGVYFSN 177
           SR  RFE++YNLLS+ YN+RIR+ T  DE+TP+ S   +F +A W+ERE WDMFGVYFSN
Sbjct: 65  SRKRRFEVVYNLLSIDYNTRIRILTSVDEITPICSVVSIFPSAGWWERETWDMFGVYFSN 124

Query: 178 HPDLRRILTDYGFEGHPFRKDFPLSGYVEVRYDDEKKRVVVEPLELAQEFRKFQLETPWE 237
           HPDLRRILTDYGFEGHP RKDFPLSGYVEVRYDD +KRVV EP+E+ QEFR F   +PWE
Sbjct: 125 HPDLRRILTDYGFEGHPLRKDFPLSGYVEVRYDDSEKRVVSEPIEMTQEFRYFDFASPWE 184

Query: 238 Q 238
           Q
Sbjct: 185 Q 185

Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Marchantia polymorpha (taxid: 3197)

EC: 1

EC: .

EC: 6

EC: .

EC: 9

EC: 9

EC: .

EC: 3

>sp|Q00673|NDUS3_CANMA Probable NADH-ubiquinone oxidoreductase 30.4 kDa subunit, mitochondrial OS=Candida maltosa GN=ALI1 PE=3 SV=1

 Score =  230 bits (586), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 110/212 (51%), Positives = 144/212 (67%), Gaps = 2/212 (0%)

Query: 55  LVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVNLVDIAGM 114
           L  FG Y    LPKYI++  +   DEL + + P  + PV+ +LK+H + QF  ++DI   
Sbjct: 66  LHKFGTYIMSCLPKYIQQFSVWK-DELTIYVAPSAIRPVMSYLKNHTSCQFKAVMDITAA 124

Query: 115 DVPSRPNRFEIIYNLLSLRYNSRIRVKTYTDELTPLDSANEVFKAANWYEREIWDMFGVY 174
           D PSR NRF+++YNLLS R+NSRIRVKTY +E +P+ S   +F  ANWYERE +D+FGV+
Sbjct: 125 DYPSRTNRFDVVYNLLSDRHNSRIRVKTYANETSPVPSVTPLFNGANWYERETYDLFGVF 184

Query: 175 FSNHPDLRRILTDYGFEGHPFRKDFPLSGYVEVRYDDEKKRVVVEPLELAQEFRKFQL-E 233
           F  HPDLRRI+TDYGFEGHP RKDFP +GY EVRYD+EKKRV+ EPLEL Q +R F +  
Sbjct: 185 FVGHPDLRRIMTDYGFEGHPLRKDFPTTGYTEVRYDEEKKRVIYEPLELTQAWRNFTVGS 244

Query: 234 TPWEQFPNFRNTPGSSGSEEIPLDEKKEEEKK 265
           + WE     ++    S     P  E ++EEKK
Sbjct: 245 SVWEPVGEGKDFTPESFKLPTPQPEPEQEEKK 276

Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Candida maltosa (taxid: 5479)

EC: 1

EC: .

EC: 6

EC: .

EC: 9

EC: 9

EC: .

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	265
91079210	257	PREDICTED: similar to AGAP006456-PA [Tri	0.928	0.957	0.745	1e-106
58388728	262	AGAP006456-PA [Anopheles gambiae str. PE	0.852	0.862	0.781	1e-103
195587367	265	GD13354 [Drosophila simulans] gi|1941954	0.920	0.920	0.729	1e-102
170055789	491	NADH dehydrogenase iron-sulfur protein 3	0.845	0.456	0.782	1e-102
195337045	265	GM14080 [Drosophila sechellia] gi|194128	0.920	0.920	0.729	1e-102
195012914	261	GH16082 [Drosophila grimshawi] gi|193897	0.901	0.915	0.730	1e-102
389613615	265	NADH ubiquinone oxidoreductase 30 kDa [P	0.932	0.932	0.7	1e-101
194865281	265	GG14478 [Drosophila erecta] gi|190653134	0.841	0.841	0.777	1e-101
195376229	267	GJ12236 [Drosophila virilis] gi|19415405	0.916	0.910	0.711	1e-101
195442360	266	GK18031 [Drosophila willistoni] gi|19416	0.901	0.898	0.708	1e-101

>gi|91079210|ref|XP_966588.1| PREDICTED: similar to AGAP006456-PA [Tribolium castaneum] gi|270004834|gb|EFA01282.1| hypothetical protein TcasGA2_TC002817 [Tribolium castaneum]

 Score =  389 bits (1000), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 190/255 (74%), Positives = 214/255 (83%), Gaps = 9/255 (3%)

Query: 6   LRCSVALRGALMSMPSKHMRLMTTAATTANTTEARPTIRKPIDEVARSHLVDFGKYCAEI 65
           LR  VA  G   +     +R   + A  A   E R T+RKP D +ARS L DFGKYCAE 
Sbjct: 12  LRSPVARNGVCATA----IRFKHSEAAPAE--ETRHTVRKP-DLLARSQLKDFGKYCAEC 64

Query: 66  LPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVNLVDIAGMDVPSRPNRFEI 125
           LPKYI+KVQIT+GDELELLI+PEGV+PVLQFLKDHH AQF N+ DIAGMDVPSR  RFE+
Sbjct: 65  LPKYIQKVQITAGDELELLIVPEGVLPVLQFLKDHHNAQFANITDIAGMDVPSREYRFEV 124

Query: 126 IYNLLSLRYNSRIRVKTYTDELTPLDSANEVFKAANWYEREIWDMFGVYFSNHPDLRRIL 185
           IYNLLSLR+NSRIRVKTYTDELTPLDSA +++K ANWYEREIWDM+GV+F+NHPDLRRIL
Sbjct: 125 IYNLLSLRFNSRIRVKTYTDELTPLDSACDIYKGANWYEREIWDMYGVFFANHPDLRRIL 184

Query: 186 TDYGFEGHPFRKDFPLSGYVEVRYDDEKKRVVVEPLELAQEFRKFQLETPWEQFPNFRNT 245
           TDYGFEGHPFRKDFPLSGYVEVRYDDEKKRVVVEPLELAQEFRKF+L  PWEQFPNFRN 
Sbjct: 185 TDYGFEGHPFRKDFPLSGYVEVRYDDEKKRVVVEPLELAQEFRKFELSAPWEQFPNFRNA 244

Query: 246 PGSSGSEEIPLDEKK 260
           P +  +EE+P++EKK
Sbjct: 245 PPT--AEEVPVEEKK 257

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|58388728|ref|XP_316497.2| AGAP006456-PA [Anopheles gambiae str. PEST] gi|55239226|gb|EAA11886.2| AGAP006456-PA [Anopheles gambiae str. PEST]

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 179/229 (78%), Positives = 199/229 (86%), Gaps = 3/229 (1%)

Query: 26  LMTTAATTANTTEARPTIRKPIDEVARSHLVDFGKYCAEILPKYIEKVQITSGDELELLI 85
           +M    +T    E+RPT+RKP D  ARS L +FGKY AE +PKY++KVQ+TSGDELE+LI
Sbjct: 30  VMLRYKSTEPAAESRPTVRKP-DAAARSELSEFGKYVAECMPKYVQKVQLTSGDELEVLI 88

Query: 86  IPEGVVPVLQFLKDHHTAQFVNLVDIAGMDVPSRPNRFEIIYNLLSLRYNSRIRVKTYTD 145
            PEGVVPVLQFLKDHH AQF NLVDIAGMDVPSRP RFEIIYN+LSLRYNSRIRVKTYTD
Sbjct: 89  APEGVVPVLQFLKDHHNAQFANLVDIAGMDVPSRPYRFEIIYNILSLRYNSRIRVKTYTD 148

Query: 146 ELTPLDSANEVFKAANWYEREIWDMFGVYFSNHPDLRRILTDYGFEGHPFRKDFPLSGYV 205
           ELTP+DS NEVFKAANWYEREIWDM+GV+F+NHPDLRRILTDYGFEGHP R+DFPLSGYV
Sbjct: 149 ELTPIDSCNEVFKAANWYEREIWDMYGVFFANHPDLRRILTDYGFEGHPQRRDFPLSGYV 208

Query: 206 EVRYDDEKKRVVVEPLELAQEFRKFQLETPWEQFPNFRNTPGSSGSEEI 254
           E+RYDDEKKRVV EPLELAQEFRKF L  PWEQFPNFRN   +  +EE+
Sbjct: 209 ELRYDDEKKRVVCEPLELAQEFRKFDLSAPWEQFPNFRN--ANPATEEV 255

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195587367|ref|XP_002083436.1| GD13354 [Drosophila simulans] gi|194195445|gb|EDX09021.1| GD13354 [Drosophila simulans]

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 181/248 (72%), Positives = 207/248 (83%), Gaps = 4/248 (1%)

Query: 1   MLRN-ALRCSVALRGALMSMPSKHMRLMTTAATTANTTEA--RPTIRKPIDEVARSHLVD 57
           ++RN   R +VA+  A   +P+     +  A+TT    +   +PT+R+P D VARSHL D
Sbjct: 4   LIRNLGARAAVAVLSAKHVVPAAGSAALRMASTTPVEPKKADKPTVRQP-DAVARSHLSD 62

Query: 58  FGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVNLVDIAGMDVP 117
           FG+Y AE LPKY++KVQ+T+GDELE+LI PEGVVPVLQFLKDHH AQF NLVDIAG+DVP
Sbjct: 63  FGRYVAECLPKYVQKVQLTAGDELEVLIAPEGVVPVLQFLKDHHQAQFTNLVDIAGVDVP 122

Query: 118 SRPNRFEIIYNLLSLRYNSRIRVKTYTDELTPLDSANEVFKAANWYEREIWDMFGVYFSN 177
            R NRFE++YNLLSLRYNSRIRVKTYTDELTPLDSA EV KAANWYEREIWDM+GV+F+N
Sbjct: 123 CRKNRFEVVYNLLSLRYNSRIRVKTYTDELTPLDSACEVHKAANWYEREIWDMYGVFFAN 182

Query: 178 HPDLRRILTDYGFEGHPFRKDFPLSGYVEVRYDDEKKRVVVEPLELAQEFRKFQLETPWE 237
           HPDLRRILTDYGFEGHP R+DFPLSGYVE+RYDDEKKRVV EPLELAQEFRKF L  PWE
Sbjct: 183 HPDLRRILTDYGFEGHPQRRDFPLSGYVELRYDDEKKRVVCEPLELAQEFRKFDLSAPWE 242

Query: 238 QFPNFRNT 245
           QFPNFRN 
Sbjct: 243 QFPNFRNA 250

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170055789|ref|XP_001863738.1| NADH dehydrogenase iron-sulfur protein 3, mitochondrial [Culex quinquefasciatus] gi|167875613|gb|EDS38996.1| NADH dehydrogenase iron-sulfur protein 3, mitochondrial [Culex quinquefasciatus]

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 180/230 (78%), Positives = 199/230 (86%), Gaps = 6/230 (2%)

Query: 36  TTEARPTIRKPIDEVARSHLVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQ 95
             E+RPT+RKP D  AR+ L DFGKY AE +PKY++KVQ+TSGDELE+LI PEGVVPVLQ
Sbjct: 268 AAESRPTVRKP-DAAARADLSDFGKYVAECMPKYVQKVQLTSGDELEVLIAPEGVVPVLQ 326

Query: 96  FLKDHHTAQFVNLVDIAGMDVPSRPNRFEIIYNLLSLRYNSRIRVKTYTDELTPLDSANE 155
           FLKDHH AQF NLVDIAGMDVPSR  RFE+IYN+LSLRYNSRIRVKTYTDELTP+DS NE
Sbjct: 327 FLKDHHQAQFANLVDIAGMDVPSRQYRFEVIYNILSLRYNSRIRVKTYTDELTPIDSCNE 386

Query: 156 VFKAANWYEREIWDMFGVYFSNHPDLRRILTDYGFEGHPFRKDFPLSGYVEVRYDDEKKR 215
           VFKAANWYEREIWDM+GV+F+NHPDLRRILTDYGFEGHP R+DFPL+GYVE+RYDDEKKR
Sbjct: 387 VFKAANWYEREIWDMYGVFFANHPDLRRILTDYGFEGHPQRRDFPLTGYVELRYDDEKKR 446

Query: 216 VVVEPLELAQEFRKFQLETPWEQFPNFRNTPGSSGSEEIPLDEKKEEEKK 265
           VV EPLELAQEFRKF L  PWEQFPNFRN   +  +EEI     K EEKK
Sbjct: 447 VVCEPLELAQEFRKFDLSAPWEQFPNFRN--ANPATEEIA---TKPEEKK 491

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195337045|ref|XP_002035143.1| GM14080 [Drosophila sechellia] gi|194128236|gb|EDW50279.1| GM14080 [Drosophila sechellia]

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 181/248 (72%), Positives = 207/248 (83%), Gaps = 4/248 (1%)

Query: 1   MLRN-ALRCSVALRGALMSMPSKHMRLMTTAATTANTTEA--RPTIRKPIDEVARSHLVD 57
           ++RN   R +VA+  A   +P+     +  A+TT    +   +PT+R+P D VARSHL D
Sbjct: 4   LIRNLGARTAVAVLSAKHVVPAAGSAALRMASTTPVEPKKADKPTVRQP-DAVARSHLSD 62

Query: 58  FGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVNLVDIAGMDVP 117
           FG+Y AE LPKY++KVQ+T+GDELE+LI PEGVVPVLQFLKDHH AQF NLVDIAG+DVP
Sbjct: 63  FGRYVAECLPKYVQKVQLTAGDELEVLIAPEGVVPVLQFLKDHHQAQFTNLVDIAGVDVP 122

Query: 118 SRPNRFEIIYNLLSLRYNSRIRVKTYTDELTPLDSANEVFKAANWYEREIWDMFGVYFSN 177
            R NRFE++YNLLSLRYNSRIRVKTYTDELTPLDSA EV KAANWYEREIWDM+GV+F+N
Sbjct: 123 CRKNRFEVVYNLLSLRYNSRIRVKTYTDELTPLDSACEVHKAANWYEREIWDMYGVFFAN 182

Query: 178 HPDLRRILTDYGFEGHPFRKDFPLSGYVEVRYDDEKKRVVVEPLELAQEFRKFQLETPWE 237
           HPDLRRILTDYGFEGHP R+DFPLSGYVE+RYDDEKKRVV EPLELAQEFRKF L  PWE
Sbjct: 183 HPDLRRILTDYGFEGHPQRRDFPLSGYVELRYDDEKKRVVCEPLELAQEFRKFDLSAPWE 242

Query: 238 QFPNFRNT 245
           QFPNFRN 
Sbjct: 243 QFPNFRNA 250

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195012914|ref|XP_001983773.1| GH16082 [Drosophila grimshawi] gi|193897255|gb|EDV96121.1| GH16082 [Drosophila grimshawi]

 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 182/249 (73%), Positives = 206/249 (82%), Gaps = 10/249 (4%)

Query: 5   ALRCSVALRGALMSMPSKH--------MRLMTTAATTANTTEARPTIRKPIDEVARSHLV 56
           AL  S+  R A  ++ +KH        +RL +TAA  A   E +PTIRKP D  AR+ L 
Sbjct: 3   ALIRSLGARIASAALTAKHVVPAGTAALRLSSTAAVDAKAPE-KPTIRKP-DAAARTSLS 60

Query: 57  DFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVNLVDIAGMDV 116
           DFG+Y AE +PKY++KVQ+TSGDELE+LI PEG+VPVLQFLKDHH AQF NLVDIAGMDV
Sbjct: 61  DFGRYVAECMPKYVQKVQLTSGDELEILIAPEGIVPVLQFLKDHHQAQFTNLVDIAGMDV 120

Query: 117 PSRPNRFEIIYNLLSLRYNSRIRVKTYTDELTPLDSANEVFKAANWYEREIWDMFGVYFS 176
           P R +RFE+IYNLLSLR+N+RIRVKTYTDELTPLDSA EV KAANWYEREIWDM+GV+F+
Sbjct: 121 PCRQHRFEVIYNLLSLRFNARIRVKTYTDELTPLDSACEVHKAANWYEREIWDMYGVFFA 180

Query: 177 NHPDLRRILTDYGFEGHPFRKDFPLSGYVEVRYDDEKKRVVVEPLELAQEFRKFQLETPW 236
           NHPDLRRILTDYGFEGHP R+DFPLSGYVE+RYDDEKKRVV EPLELAQEFRKF L  PW
Sbjct: 181 NHPDLRRILTDYGFEGHPQRRDFPLSGYVELRYDDEKKRVVCEPLELAQEFRKFDLSAPW 240

Query: 237 EQFPNFRNT 245
           EQFPNFRN 
Sbjct: 241 EQFPNFRNA 249

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|389613615|dbj|BAM20138.1| NADH ubiquinone oxidoreductase 30 kDa [Papilio xuthus]

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 175/250 (70%), Positives = 206/250 (82%), Gaps = 3/250 (1%)

Query: 1   MLRNALRCSVALRGALM--SMPSKHMRLMTTAATTANTTEARPTIRKPIDEVARSHLVDF 58
            L+ A+  +  L  A++  +  S    + T     A   E RPT+ K +D + +S LV+F
Sbjct: 4   FLKRAMSANSQLGRAILKNASVSSMQSVATKTDEAAPQVEIRPTVAK-VDPLQKSQLVEF 62

Query: 59  GKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVNLVDIAGMDVPS 118
           GKY AE LPKY++KVQ+T+G+ELE+LI  EGV+P+LQFLKDHH AQF +L DIAGMDVPS
Sbjct: 63  GKYVAECLPKYVQKVQLTAGNELEILIPSEGVIPILQFLKDHHNAQFASLADIAGMDVPS 122

Query: 119 RPNRFEIIYNLLSLRYNSRIRVKTYTDELTPLDSANEVFKAANWYEREIWDMFGVYFSNH 178
           RPNRFEIIYNLLSLRYN+RIRVKTYTDELTP+DSA +VFKAANWYEREIWDM+GV+F+NH
Sbjct: 123 RPNRFEIIYNLLSLRYNARIRVKTYTDELTPVDSACDVFKAANWYEREIWDMYGVFFANH 182

Query: 179 PDLRRILTDYGFEGHPFRKDFPLSGYVEVRYDDEKKRVVVEPLELAQEFRKFQLETPWEQ 238
           PDLRRILTDYGFEGHPFRKDFPLSGYVEVRYDDE+KRVVVEPLELAQEFR+F+L  PWEQ
Sbjct: 183 PDLRRILTDYGFEGHPFRKDFPLSGYVEVRYDDEQKRVVVEPLELAQEFRRFELSAPWEQ 242

Query: 239 FPNFRNTPGS 248
           FPNFR  P +
Sbjct: 243 FPNFRGNPAA 252

Source: Papilio xuthus

Species: Papilio xuthus

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194865281|ref|XP_001971351.1| GG14478 [Drosophila erecta] gi|190653134|gb|EDV50377.1| GG14478 [Drosophila erecta]

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 175/225 (77%), Positives = 196/225 (87%), Gaps = 2/225 (0%)

Query: 21  SKHMRLMTTAATTANTTEARPTIRKPIDEVARSHLVDFGKYCAEILPKYIEKVQITSGDE 80
           S  +R+ +TA       + +PT+R+P D VARSHL DFG+Y AE LPKY++KVQ+T+GDE
Sbjct: 28  SAALRMASTAPVEPKKAD-KPTVRQP-DAVARSHLSDFGRYVAECLPKYVQKVQLTAGDE 85

Query: 81  LELLIIPEGVVPVLQFLKDHHTAQFVNLVDIAGMDVPSRPNRFEIIYNLLSLRYNSRIRV 140
           LE+LI PEGVVPVLQFLKDHH AQF NLVDIAG+DVP R NRFE++YNLLSLRYNSRIRV
Sbjct: 86  LEVLIAPEGVVPVLQFLKDHHQAQFTNLVDIAGVDVPCRKNRFEVVYNLLSLRYNSRIRV 145

Query: 141 KTYTDELTPLDSANEVFKAANWYEREIWDMFGVYFSNHPDLRRILTDYGFEGHPFRKDFP 200
           KTYTDELTPLDSA EV KAANWYEREIWDM+GV+F+NHPDLRRILTDYGFEGHP R+DFP
Sbjct: 146 KTYTDELTPLDSACEVHKAANWYEREIWDMYGVFFANHPDLRRILTDYGFEGHPQRRDFP 205

Query: 201 LSGYVEVRYDDEKKRVVVEPLELAQEFRKFQLETPWEQFPNFRNT 245
           LSGYVE+RYDDEKKRVV EPLELAQEFRKF L  PWEQFPNFRN 
Sbjct: 206 LSGYVELRYDDEKKRVVCEPLELAQEFRKFDLSAPWEQFPNFRNA 250

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195376229|ref|XP_002046899.1| GJ12236 [Drosophila virilis] gi|194154057|gb|EDW69241.1| GJ12236 [Drosophila virilis]

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 180/253 (71%), Positives = 206/253 (81%), Gaps = 10/253 (3%)

Query: 5   ALRCSVALRGALMSMPSKH--------MRLMTTAATTANTTEARPTIRKPIDEVARSHLV 56
           AL  ++  R A  ++ +KH        +R+ +TA   A   E +PT+RKP D  AR+ L 
Sbjct: 3   ALIRNLGARIASAALTAKHVVPAGTAALRMQSTAPVDAKAAE-KPTVRKP-DAAARTSLS 60

Query: 57  DFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVNLVDIAGMDV 116
           DFG+Y AE LPKY++KVQ+TSGDELE+LI PEGVVPVLQFLKDHH AQF NLVDIAG+DV
Sbjct: 61  DFGRYVAECLPKYVQKVQLTSGDELEVLIAPEGVVPVLQFLKDHHQAQFTNLVDIAGLDV 120

Query: 117 PSRPNRFEIIYNLLSLRYNSRIRVKTYTDELTPLDSANEVFKAANWYEREIWDMFGVYFS 176
           P R NRFE++YNLLSLR+NSRIRVKTYTDELTPLDS  EV KAANWYEREIWDM+GV+F+
Sbjct: 121 PCRKNRFEVVYNLLSLRFNSRIRVKTYTDELTPLDSVCEVHKAANWYEREIWDMYGVFFA 180

Query: 177 NHPDLRRILTDYGFEGHPFRKDFPLSGYVEVRYDDEKKRVVVEPLELAQEFRKFQLETPW 236
           NHPDLRRILTDYGFEGHP R+DFPLSGYVE+RYDDEKKRVV EPLELAQEFRKF L  PW
Sbjct: 181 NHPDLRRILTDYGFEGHPQRRDFPLSGYVELRYDDEKKRVVCEPLELAQEFRKFDLSAPW 240

Query: 237 EQFPNFRNTPGSS 249
           EQFPNFRN   +S
Sbjct: 241 EQFPNFRNANPAS 253

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195442360|ref|XP_002068926.1| GK18031 [Drosophila willistoni] gi|194165011|gb|EDW79912.1| GK18031 [Drosophila willistoni]

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 177/250 (70%), Positives = 207/250 (82%), Gaps = 11/250 (4%)

Query: 5   ALRCSVALRGALMSMPSKH---------MRLMTTAATTANTTEARPTIRKPIDEVARSHL 55
           AL  ++  R A +++ +KH         +R+ +TA   A   E +PT+RKP D  AR++L
Sbjct: 3   ALIRNLGARAAAIALTTKHVIPAGSTAVLRMASTAPVDAKKAE-KPTVRKP-DAAARTNL 60

Query: 56  VDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVNLVDIAGMD 115
            DFG+Y AE LPKY++KVQ+T+GDELE+LI PEGVVPVLQFLKDHH AQF NLVDIAG+D
Sbjct: 61  SDFGRYVAECLPKYVQKVQLTAGDELEVLIAPEGVVPVLQFLKDHHQAQFTNLVDIAGLD 120

Query: 116 VPSRPNRFEIIYNLLSLRYNSRIRVKTYTDELTPLDSANEVFKAANWYEREIWDMFGVYF 175
           VP R NRFE++YNLLSLR+N+RIRVKTYTDELTPLDSA +V KAANWYEREIWDM+GV+F
Sbjct: 121 VPCRKNRFEVVYNLLSLRFNARIRVKTYTDELTPLDSACDVHKAANWYEREIWDMYGVFF 180

Query: 176 SNHPDLRRILTDYGFEGHPFRKDFPLSGYVEVRYDDEKKRVVVEPLELAQEFRKFQLETP 235
           +NHPDLRRILTDYGFEGHP R+DFPLSGYVE+RYDDEKKRVV EPLELAQEFRKF L  P
Sbjct: 181 ANHPDLRRILTDYGFEGHPQRRDFPLSGYVELRYDDEKKRVVCEPLELAQEFRKFDLSAP 240

Query: 236 WEQFPNFRNT 245
           WEQFPNFRN 
Sbjct: 241 WEQFPNFRNA 250

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	265
FB|FBgn0035404	265	CG12079 [Drosophila melanogast	0.947	0.947	0.698	2.4e-92
ZFIN|ZDB-GENE-050417-274	255	ndufs3 "NADH dehydrogenase (ub	0.750	0.780	0.728	3.2e-81
UNIPROTKB|O75489	264	NDUFS3 "NADH dehydrogenase [ub	0.769	0.772	0.720	1.4e-80
UNIPROTKB|Q0MQG6	263	NDUFS3 "NADH dehydrogenase [ub	0.769	0.775	0.720	1.4e-80
UNIPROTKB|Q0MQG7	263	NDUFS3 "NADH dehydrogenase [ub	0.769	0.775	0.720	1.4e-80
UNIPROTKB|Q0MQG8	264	NDUFS3 "NADH dehydrogenase [ub	0.769	0.772	0.720	1.4e-80
UNIPROTKB|F1ND23	237	NDUFS3 "Uncharacterized protei	0.762	0.852	0.722	7.6e-80
UNIPROTKB|P23709	266	NDUFS3 "NADH dehydrogenase [ub	0.769	0.766	0.700	1.2e-79
UNIPROTKB|F1P9Y3	266	NDUFS3 "Uncharacterized protei	0.769	0.766	0.700	1.6e-79
UNIPROTKB|F1MS25	242	NDUFS3 "NADH dehydrogenase [ub	0.769	0.842	0.700	2.6e-79

FB|FBgn0035404 CG12079 [Drosophila melanogaster (taxid:7227)]

 Score = 920 (328.9 bits), Expect = 2.4e-92, P = 2.4e-92
 Identities = 181/259 (69%), Positives = 205/259 (79%)

Query:     1 MLRN-ALRCSVALRGALMSMP---SKHMRLMXXXXXXXXXXXXXXXIRKPIDEVARSHLV 56
             ++RN   R +VA   A   +P   S  +R M               +R+P D VARSHL 
Sbjct:     4 LIRNLGARAAVAALSAKHVVPAAGSTALR-MASTTPVEPKKADKPTVRQP-DAVARSHLS 61

Query:    57 DFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVNLVDIAGMDV 116
             DFG+Y AE LPKY++KVQ+T+GDELE+LI PEGVVPVLQFLKDHH AQF NLVDIAG+DV
Sbjct:    62 DFGRYVAECLPKYVQKVQLTAGDELEVLIAPEGVVPVLQFLKDHHQAQFTNLVDIAGVDV 121

Query:   117 PSRPNRFEIIYNLLSLRYNSRIRVKTYTDELTPLDSANEVFKAANWYEREIWDMFGVYFS 176
             P R NRFE++YNLLSLRYNSRIRVKTYTDELTPLDSA EV KAANWYEREIWDM+GV+F+
Sbjct:   122 PCRKNRFEVVYNLLSLRYNSRIRVKTYTDELTPLDSACEVHKAANWYEREIWDMYGVFFA 181

Query:   177 NHPDLRRILTDYGFEGHPFRKDFPLSGYVEVRYDDEKKRVVVEPLELAQEFRKFQLETPW 236
             NHPDLRRILTDYGFEGHP R+DFPLSGYVE+RYDDEKKRVV EPLELAQEFRKF L  PW
Sbjct:   182 NHPDLRRILTDYGFEGHPQRRDFPLSGYVELRYDDEKKRVVCEPLELAQEFRKFDLSAPW 241

Query:   237 EQFPNFRNTPGSSGSEEIP 255
             EQFPNFRN   +  +E +P
Sbjct:   242 EQFPNFRNA--NPPAEVVP 258

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=ISS

GO:0005747 "mitochondrial respiratory chain complex I" evidence=ISS

GO:0003954 "NADH dehydrogenase activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

ZFIN|ZDB-GENE-050417-274 ndufs3 "NADH dehydrogenase (ubiquinone) Fe-S protein 3, (NADH-coenzyme Q reductase)" [Danio rerio (taxid:7955)]

 Score = 815 (292.0 bits), Expect = 3.2e-81, P = 3.2e-81
 Identities = 145/199 (72%), Positives = 172/199 (86%)

Query:    45 KPIDEVARSHLVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQ 104
             +P D V  S L +FG+Y AEILPKY+++VQ+T  +ELE+++ PEG++PVL FLKDH  AQ
Sbjct:    41 RPKDPVTHSQLSEFGEYVAEILPKYVQQVQVTCFNELEIMVHPEGIIPVLTFLKDHTNAQ 100

Query:   105 FVNLVDIAGMDVPSRPNRFEIIYNLLSLRYNSRIRVKTYTDELTPLDSANEVFKAANWYE 164
             F NL D+  +D+PS+ NRFEI+YNLLSL YNSRIRVKTYTDELTPLDS+  VF+A+NWYE
Sbjct:   101 FRNLADLTAVDIPSKQNRFEIVYNLLSLHYNSRIRVKTYTDELTPLDSSVPVFQASNWYE 160

Query:   165 REIWDMFGVYFSNHPDLRRILTDYGFEGHPFRKDFPLSGYVEVRYDDEKKRVVVEPLELA 224
             RE+WDMFGV+F+NHPDLRRILTDYGFEGHPFRKDFPLSGYVEVRYDDE KRVV EP+ELA
Sbjct:   161 REVWDMFGVFFTNHPDLRRILTDYGFEGHPFRKDFPLSGYVEVRYDDEVKRVVAEPVELA 220

Query:   225 QEFRKFQLETPWEQFPNFR 243
             QEFRKF L +PWE FP +R
Sbjct:   221 QEFRKFDLNSPWEAFPAYR 239

GO:0016651 "oxidoreductase activity, acting on NAD(P)H" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

UNIPROTKB|O75489 NDUFS3 "NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 809 (289.8 bits), Expect = 1.4e-80, P = 1.4e-80
 Identities = 147/204 (72%), Positives = 175/204 (85%)

Query:    45 KPIDEVARSHLVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQ 104
             +P ++VA   L  FG+Y AEILPKY+++VQ++  +ELE+ I P+GV+PVL FL+DH  AQ
Sbjct:    48 RPRNDVAHKQLSAFGEYVAEILPKYVQQVQVSCFNELEVCIHPDGVIPVLTFLRDHTNAQ 107

Query:   105 FVNLVDIAGMDVPSRPNRFEIIYNLLSLRYNSRIRVKTYTDELTPLDSANEVFKAANWYE 164
             F +LVD+  +DVP+R NRFEI+YNLLSLR+NSRIRVKTYTDELTP++SA  VFKAANWYE
Sbjct:   108 FKSLVDLTAVDVPTRQNRFEIVYNLLSLRFNSRIRVKTYTDELTPIESAVSVFKAANWYE 167

Query:   165 REIWDMFGVYFSNHPDLRRILTDYGFEGHPFRKDFPLSGYVEVRYDDEKKRVVVEPLELA 224
             REIWDMFGV+F+NHPDLRRILTDYGFEGHPFRKDFPLSGYVE+RYDDE KRVV EP+ELA
Sbjct:   168 REIWDMFGVFFANHPDLRRILTDYGFEGHPFRKDFPLSGYVELRYDDEVKRVVAEPVELA 227

Query:   225 QEFRKFQLETPWEQFPNFRNTPGS 248
             QEFRKF L +PWE FP +R  P S
Sbjct:   228 QEFRKFDLNSPWEAFPVYRQPPES 251

GO:0006120 "mitochondrial electron transport, NADH to ubiquinone" evidence=NAS

GO:0009055 "electron carrier activity" evidence=NAS

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=NAS

GO:0031966 "mitochondrial membrane" evidence=IDA

GO:0003954 "NADH dehydrogenase activity" evidence=IMP

GO:0006917 "induction of apoptosis" evidence=IMP

GO:0030308 "negative regulation of cell growth" evidence=IMP

GO:0072593 "reactive oxygen species metabolic process" evidence=IMP

GO:0005739 "mitochondrion" evidence=NAS

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IDA;NAS

GO:0005515 "protein binding" evidence=IPI

GO:0005743 "mitochondrial inner membrane" evidence=TAS

GO:0022904 "respiratory electron transport chain" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

UNIPROTKB|Q0MQG6 NDUFS3 "NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial" [Pongo pygmaeus (taxid:9600)]

 Score = 809 (289.8 bits), Expect = 1.4e-80, P = 1.4e-80
 Identities = 147/204 (72%), Positives = 175/204 (85%)

Query:    45 KPIDEVARSHLVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQ 104
             +P ++VA   L  FG+Y AEILPKY+++VQ++  +ELE+ I P+GV+PVL FL+DH  AQ
Sbjct:    47 RPRNDVAHQQLSAFGEYVAEILPKYVQQVQVSCFNELEVCIHPDGVIPVLTFLRDHTNAQ 106

Query:   105 FVNLVDIAGMDVPSRPNRFEIIYNLLSLRYNSRIRVKTYTDELTPLDSANEVFKAANWYE 164
             F +LVD+  +DVP+R NRFEI+YNLLSLR+NSRIRVKTYTDELTP++SA  VFKAANWYE
Sbjct:   107 FKSLVDLTAVDVPTRQNRFEIVYNLLSLRFNSRIRVKTYTDELTPIESAVSVFKAANWYE 166

Query:   165 REIWDMFGVYFSNHPDLRRILTDYGFEGHPFRKDFPLSGYVEVRYDDEKKRVVVEPLELA 224
             REIWDMFGV+F+NHPDLRRILTDYGFEGHPFRKDFPLSGYVE+RYDDE KRVV EP+ELA
Sbjct:   167 REIWDMFGVFFANHPDLRRILTDYGFEGHPFRKDFPLSGYVELRYDDEVKRVVAEPVELA 226

Query:   225 QEFRKFQLETPWEQFPNFRNTPGS 248
             QEFRKF L +PWE FP +R  P S
Sbjct:   227 QEFRKFDLNSPWEAFPVYRQPPES 250

GO:0003954 "NADH dehydrogenase activity" evidence=ISS

GO:0005747 "mitochondrial respiratory chain complex I" evidence=ISS

GO:0006917 "induction of apoptosis" evidence=ISS

GO:0030308 "negative regulation of cell growth" evidence=ISS

GO:0031966 "mitochondrial membrane" evidence=ISS

GO:0072593 "reactive oxygen species metabolic process" evidence=ISS

UNIPROTKB|Q0MQG7 NDUFS3 "NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial" [Gorilla gorilla gorilla (taxid:9595)]

 Score = 809 (289.8 bits), Expect = 1.4e-80, P = 1.4e-80
 Identities = 147/204 (72%), Positives = 175/204 (85%)

Query:    45 KPIDEVARSHLVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQ 104
             +P ++VA   L  FG+Y AEILPKY+++VQ++  +ELE+ I P+GV+PVL FL+DH  AQ
Sbjct:    47 RPRNDVAHKQLSAFGEYVAEILPKYVQQVQVSCFNELEVCIHPDGVIPVLTFLRDHTNAQ 106

Query:   105 FVNLVDIAGMDVPSRPNRFEIIYNLLSLRYNSRIRVKTYTDELTPLDSANEVFKAANWYE 164
             F +LVD+  +DVP+R NRFEI+YNLLSLR+NSRIRVKTYTDELTP++SA  VFKAANWYE
Sbjct:   107 FKSLVDLTAVDVPTRQNRFEIVYNLLSLRFNSRIRVKTYTDELTPIESAVSVFKAANWYE 166

Query:   165 REIWDMFGVYFSNHPDLRRILTDYGFEGHPFRKDFPLSGYVEVRYDDEKKRVVVEPLELA 224
             REIWDMFGV+F+NHPDLRRILTDYGFEGHPFRKDFPLSGYVE+RYDDE KRVV EP+ELA
Sbjct:   167 REIWDMFGVFFANHPDLRRILTDYGFEGHPFRKDFPLSGYVELRYDDEVKRVVAEPVELA 226

Query:   225 QEFRKFQLETPWEQFPNFRNTPGS 248
             QEFRKF L +PWE FP +R  P S
Sbjct:   227 QEFRKFDLNSPWEAFPVYRQPPES 250

GO:0003954 "NADH dehydrogenase activity" evidence=ISS

GO:0005747 "mitochondrial respiratory chain complex I" evidence=ISS

GO:0006917 "induction of apoptosis" evidence=ISS

GO:0030308 "negative regulation of cell growth" evidence=ISS

GO:0031966 "mitochondrial membrane" evidence=ISS

GO:0072593 "reactive oxygen species metabolic process" evidence=ISS

UNIPROTKB|Q0MQG8 NDUFS3 "NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial" [Pan troglodytes (taxid:9598)]

 Score = 809 (289.8 bits), Expect = 1.4e-80, P = 1.4e-80
 Identities = 147/204 (72%), Positives = 175/204 (85%)

Query:    45 KPIDEVARSHLVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQ 104
             +P ++VA   L  FG+Y AEILPKY+++VQ++  +ELE+ I P+GV+PVL FL+DH  AQ
Sbjct:    48 RPRNDVAHKQLSAFGEYVAEILPKYVQQVQVSCFNELEVCIHPDGVIPVLTFLRDHTNAQ 107

Query:   105 FVNLVDIAGMDVPSRPNRFEIIYNLLSLRYNSRIRVKTYTDELTPLDSANEVFKAANWYE 164
             F +LVD+  +DVP+R NRFEI+YNLLSLR+NSRIRVKTYTDELTP++SA  VFKAANWYE
Sbjct:   108 FKSLVDLTAVDVPTRQNRFEIVYNLLSLRFNSRIRVKTYTDELTPIESAVSVFKAANWYE 167

Query:   165 REIWDMFGVYFSNHPDLRRILTDYGFEGHPFRKDFPLSGYVEVRYDDEKKRVVVEPLELA 224
             REIWDMFGV+F+NHPDLRRILTDYGFEGHPFRKDFPLSGYVE+RYDDE KRVV EP+ELA
Sbjct:   168 REIWDMFGVFFANHPDLRRILTDYGFEGHPFRKDFPLSGYVELRYDDEVKRVVAEPVELA 227

Query:   225 QEFRKFQLETPWEQFPNFRNTPGS 248
             QEFRKF L +PWE FP +R  P S
Sbjct:   228 QEFRKFDLNSPWEAFPVYRQPPES 251

GO:0003954 "NADH dehydrogenase activity" evidence=ISS

GO:0005747 "mitochondrial respiratory chain complex I" evidence=ISS

GO:0006917 "induction of apoptosis" evidence=ISS

GO:0030308 "negative regulation of cell growth" evidence=ISS

GO:0031966 "mitochondrial membrane" evidence=ISS

GO:0072593 "reactive oxygen species metabolic process" evidence=ISS

UNIPROTKB|F1ND23 NDUFS3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 802 (287.4 bits), Expect = 7.6e-80, P = 7.6e-80
 Identities = 146/202 (72%), Positives = 172/202 (85%)

Query:    45 KPIDEVARSHLVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQ 104
             +P +EV +  L  FG+Y AEILPKYI++VQ+T  +ELELLI P+G++PVL FL+DH  AQ
Sbjct:    21 RPKNEVEQKQLCAFGEYVAEILPKYIQQVQVTCFNELELLIHPDGIIPVLTFLRDHTNAQ 80

Query:   105 FVNLVDIAGMDVPSRPNRFEIIYNLLSLRYNSRIRVKTYTDELTPLDSANEVFKAANWYE 164
             F +L D+  +DVPSR  RFEI+YNLLSLR+NSRIRVKTYTDELTP+DSA  V KAANWYE
Sbjct:    81 FKSLADLTAVDVPSRQYRFEIVYNLLSLRFNSRIRVKTYTDELTPIDSAVSVHKAANWYE 140

Query:   165 REIWDMFGVYFSNHPDLRRILTDYGFEGHPFRKDFPLSGYVEVRYDDEKKRVVVEPLELA 224
             RE+WDM+GV+F+NHPDLRRILTDYGFEGHPFRKDFPLSGYVEVRYDDE KRVV EP+EL+
Sbjct:   141 REVWDMYGVFFANHPDLRRILTDYGFEGHPFRKDFPLSGYVEVRYDDEVKRVVAEPVELS 200

Query:   225 QEFRKFQLETPWEQFPNFRNTP 246
             QEFRKF L +PWE FP +R  P
Sbjct:   201 QEFRKFDLNSPWEAFPAYRAPP 222

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=IEA

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IEA

GO:0030308 "negative regulation of cell growth" evidence=IEA

GO:0072593 "reactive oxygen species metabolic process" evidence=IEA

UNIPROTKB|P23709 NDUFS3 "NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 800 (286.7 bits), Expect = 1.2e-79, P = 1.2e-79
 Identities = 143/204 (70%), Positives = 174/204 (85%)

Query:    45 KPIDEVARSHLVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQ 104
             +P ++VA   L  FG+Y AEILPKY+++VQ++  +ELE+ I P+GV+PVL FL+DH  AQ
Sbjct:    50 RPRNDVAHKQLSAFGEYVAEILPKYVQQVQVSCFNELEICIHPDGVIPVLTFLRDHSNAQ 109

Query:   105 FVNLVDIAGMDVPSRPNRFEIIYNLLSLRYNSRIRVKTYTDELTPLDSANEVFKAANWYE 164
             F +L D+  +D+P+R NRFEI+YNLLSLR+NSRIRVKTYTDELTP++S+  V+KAANWYE
Sbjct:   110 FKSLADLTAVDIPTRQNRFEIVYNLLSLRFNSRIRVKTYTDELTPIESSVPVYKAANWYE 169

Query:   165 REIWDMFGVYFSNHPDLRRILTDYGFEGHPFRKDFPLSGYVEVRYDDEKKRVVVEPLELA 224
             REIWDMFGV+F+NHPDLRRILTDYGFEGHPFRKDFPLSGYVE+RYDDE KRVV EP+ELA
Sbjct:   170 REIWDMFGVFFANHPDLRRILTDYGFEGHPFRKDFPLSGYVELRYDDEVKRVVAEPVELA 229

Query:   225 QEFRKFQLETPWEQFPNFRNTPGS 248
             QEFRKF L +PWE FP +R  P S
Sbjct:   230 QEFRKFDLNSPWEAFPAYRQPPES 253

GO:0031966 "mitochondrial membrane" evidence=ISS

GO:0030308 "negative regulation of cell growth" evidence=ISS

GO:0006917 "induction of apoptosis" evidence=ISS

GO:0072593 "reactive oxygen species metabolic process" evidence=ISS

GO:0005747 "mitochondrial respiratory chain complex I" evidence=ISS

GO:0003954 "NADH dehydrogenase activity" evidence=ISS

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

UNIPROTKB|F1P9Y3 NDUFS3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 799 (286.3 bits), Expect = 1.6e-79, P = 1.6e-79
 Identities = 143/204 (70%), Positives = 173/204 (84%)

Query:    45 KPIDEVARSHLVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQ 104
             +P ++VA   L  FG+Y AEILPKY+++VQ++  +ELE+ I P+GV+PVL FL+DH  AQ
Sbjct:    50 RPRNDVAHKQLSAFGEYVAEILPKYVQQVQVSCFNELEICIHPDGVIPVLTFLRDHTNAQ 109

Query:   105 FVNLVDIAGMDVPSRPNRFEIIYNLLSLRYNSRIRVKTYTDELTPLDSANEVFKAANWYE 164
             F +L D+  +D+P+R NRFEI+YNLLSLR+NSRIRVKTYTDELTP++S   V+KAANWYE
Sbjct:   110 FKSLADLTAVDIPTRQNRFEIVYNLLSLRFNSRIRVKTYTDELTPIESTVSVYKAANWYE 169

Query:   165 REIWDMFGVYFSNHPDLRRILTDYGFEGHPFRKDFPLSGYVEVRYDDEKKRVVVEPLELA 224
             REIWDMFGV+F+NHPDLRRILTDYGFEGHPFRKDFPLSGYVE+RYDDE KRVV EP+ELA
Sbjct:   170 REIWDMFGVFFANHPDLRRILTDYGFEGHPFRKDFPLSGYVELRYDDEVKRVVAEPVELA 229

Query:   225 QEFRKFQLETPWEQFPNFRNTPGS 248
             QEFRKF L +PWE FP +R  P S
Sbjct:   230 QEFRKFDLNSPWEAFPAYRQPPES 253

GO:0072593 "reactive oxygen species metabolic process" evidence=IEA

GO:0030308 "negative regulation of cell growth" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IEA

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IEA

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=IEA

UNIPROTKB|F1MS25 NDUFS3 "NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 797 (285.6 bits), Expect = 2.6e-79, P = 2.6e-79
 Identities = 143/204 (70%), Positives = 173/204 (84%)

Query:    45 KPIDEVARSHLVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQ 104
             +P + VA   L  FG+Y AEILPKY+++VQ++  +ELE+ I P+GV+PVL FL+DH  AQ
Sbjct:    26 RPRNAVAHKQLSAFGEYVAEILPKYVQQVQVSCFNELEICIHPDGVIPVLTFLRDHSNAQ 85

Query:   105 FVNLVDIAGMDVPSRPNRFEIIYNLLSLRYNSRIRVKTYTDELTPLDSANEVFKAANWYE 164
             F +L D+  +D+P+R NRFEI+YNLLSLR+NSRIRVKTYTDELTP++S+  V+KAANWYE
Sbjct:    86 FKSLADLTAVDIPTRQNRFEIVYNLLSLRFNSRIRVKTYTDELTPIESSVPVYKAANWYE 145

Query:   165 REIWDMFGVYFSNHPDLRRILTDYGFEGHPFRKDFPLSGYVEVRYDDEKKRVVVEPLELA 224
             REIWDMFGV+F+NHPDLRRILTDYGFEGHPFRKDFPLSGYVE+RYDDE KRVV EP+ELA
Sbjct:   146 REIWDMFGVFFANHPDLRRILTDYGFEGHPFRKDFPLSGYVELRYDDEVKRVVAEPVELA 205

Query:   225 QEFRKFQLETPWEQFPNFRNTPGS 248
             QEFRKF L +PWE FP +R  P S
Sbjct:   206 QEFRKFDLNSPWEAFPAYRQPPES 229

GO:0072593 "reactive oxygen species metabolic process" evidence=IEA

GO:0030308 "negative regulation of cell growth" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IEA

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IEA

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q0MQG6	NDUS3_PONPY	1, ., 6, ., 9, 9, ., 3	0.6544	0.9056	0.9125	N/A	N/A
Q0MQG7	NDUS3_GORGO	1, ., 6, ., 9, 9, ., 3	0.6544	0.9056	0.9125	N/A	N/A
A5VPY5	NUOC_BRUO2	1, ., 6, ., 9, 9, ., 5	0.5478	0.7056	0.9257	yes	N/A
B5ZYL4	NUOC_RHILW	1, ., 6, ., 9, 9, ., 5	0.5519	0.6867	0.91	yes	N/A
B2S545	NUOC_BRUA1	1, ., 6, ., 9, 9, ., 5	0.5425	0.7056	0.9257	yes	N/A
Q0MQG8	NDUS3_PANTR	1, ., 6, ., 9, 9, ., 3	0.6504	0.9056	0.9090	yes	N/A
Q2K9T3	NUOC_RHIEC	1, ., 6, ., 9, 9, ., 5	0.5464	0.6867	0.91	yes	N/A
A6X1N2	NUOC_OCHA4	1, ., 6, ., 9, 9, ., 5	0.5573	0.6867	0.9009	yes	N/A
O75489	NDUS3_HUMAN	1, ., 6, ., 9, 9, ., 3	0.6504	0.9056	0.9090	yes	N/A
C0RIE1	NUOC_BRUMB	1, ., 6, ., 9, 9, ., 5	0.5478	0.7056	0.9257	yes	N/A
Q98KQ7	NUOC_RHILO	1, ., 6, ., 9, 9, ., 5	0.5135	0.6943	0.9154	yes	N/A
Q11JK4	NUOC_MESSB	1, ., 6, ., 9, 9, ., 5	0.5737	0.6867	0.91	yes	N/A
Q0C1E5	NUOC_HYPNA	1, ., 6, ., 9, 9, ., 5	0.4807	0.7396	0.9702	yes	N/A
B0CLD1	NUOC_BRUSI	1, ., 6, ., 9, 9, ., 5	0.5478	0.7056	0.9257	yes	N/A
Q9DCT2	NDUS3_MOUSE	1, ., 6, ., 9, 9, ., 3	0.6234	0.9018	0.9087	yes	N/A
A9W1N1	NUOC_METEP	1, ., 6, ., 9, 9, ., 5	0.5024	0.7660	0.9269	yes	N/A
Q2YNC7	NUOC_BRUA2	1, ., 6, ., 9, 9, ., 5	0.5425	0.7056	0.9257	yes	N/A
Q95748	NDUS3_ARATH	1, ., 6, ., 9, 9, ., 3	0.5745	0.6679	0.9315	yes	N/A
Q2RU38	NUOC_RHORT	1, ., 6, ., 9, 9, ., 5	0.5300	0.6867	0.8544	yes	N/A
B3PVZ9	NUOC1_RHIE6	1, ., 6, ., 9, 9, ., 5	0.5519	0.6867	0.91	yes	N/A
A7HY47	NUOC_PARL1	1, ., 6, ., 9, 9, ., 5	0.4855	0.7320	0.97	yes	N/A
Q57DU9	NUOC_BRUAB	1, ., 6, ., 9, 9, ., 5	0.5425	0.7056	0.9257	yes	N/A
O68854	NUOC1_RHIME	1, ., 6, ., 9, 9, ., 5	0.5136	0.6867	0.9054	yes	N/A
A6U7W5	NUOC_SINMW	1, ., 6, ., 9, 9, ., 5	0.5081	0.6867	0.9054	yes	N/A
Q35322	NDUS3_ORYSJ	1, ., 6, ., 9, 9, ., 3	0.5833	0.6716	0.9368	yes	N/A
A7IPA5	NUOC_XANP2	1, ., 6, ., 9, 9, ., 5	0.5136	0.6867	0.8708	yes	N/A
Q2W3I6	NUOC_MAGSA	1, ., 6, ., 9, 9, ., 5	0.5409	0.6905	0.9195	yes	N/A
Q6G390	NUOC_BARHE	1, ., 6, ., 9, 9, ., 5	0.4597	0.7433	0.9752	yes	N/A
B0ULK6	NUOC_METS4	1, ., 6, ., 9, 9, ., 5	0.5911	0.6	0.7395	yes	N/A
A9MAI1	NUOC_BRUC2	1, ., 6, ., 9, 9, ., 5	0.5478	0.7056	0.9257	yes	N/A
A9IUQ0	NUOC_BART1	1, ., 6, ., 9, 9, ., 5	0.4809	0.7471	0.9753	yes	N/A
Q8YGK2	NUOC_BRUME	1, ., 6, ., 9, 9, ., 5	0.5478	0.7056	0.9257	yes	N/A
P23709	NDUS3_BOVIN	1, ., 6, ., 9, 9, ., 3	0.6290	0.8981	0.8947	yes	N/A
Q1MIL3	NUOC_RHIL3	1, ., 6, ., 9, 9, ., 5	0.5573	0.6867	0.91	yes	N/A
A8I3Y9	NUOC_AZOC5	1, ., 6, ., 9, 9, ., 5	0.4918	0.6867	0.8625	yes	N/A
Q8G1B5	NUOC_BRUSU	1, ., 6, ., 9, 9, ., 5	0.5478	0.7056	0.9257	yes	N/A
Q6FZY9	NUOC_BARQU	1, ., 6, ., 9, 9, ., 5	0.4714	0.7471	0.9801	yes	N/A
B1ZA44	NUOC_METPB	1, ., 6, ., 9, 9, ., 5	0.4807	0.7660	0.9269	yes	N/A
A1USW9	NUOC_BARBK	1, ., 6, ., 9, 9, ., 5	0.4946	0.7056	0.9121	yes	N/A
B9JD44	NUOC_AGRRK	1, ., 6, ., 9, 9, ., 5	0.5245	0.6867	0.91	yes	N/A
B1LUN5	NUOC_METRJ	1, ., 6, ., 9, 9, ., 5	0.5822	0.5962	0.7348	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.6.5.3	0.991
3rd Layer	1.6.99	0.976
3rd Layer	1.6.99.3	0.991
3rd Layer	1.6.5	0.976

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	265
PRK06074	189	PRK06074, PRK06074, NADH dehydrogenase subunit C;	5e-76
COG0852	176	COG0852, NuoC, NADH:ubiquinone oxidoreductase 27 k	2e-60
TIGR01961	121	TIGR01961, NuoC_fam, NADH (or F420H2) dehydrogenas	2e-51
pfam00329	103	pfam00329, Complex1_30kDa, Respiratory-chain NADH	5e-37
PRK11742	575	PRK11742, PRK11742, bifunctional NADH:ubiquinone o	1e-31
PRK08491	263	PRK08491, PRK08491, NADH dehydrogenase subunit C;	1e-29
PRK13292	788	PRK13292, PRK13292, trifunctional NADH dehydrogena	9e-29
PRK07785	235	PRK07785, PRK07785, NADH dehydrogenase subunit C;	1e-26
PRK07735	430	PRK07735, PRK07735, NADH dehydrogenase subunit C;	3e-15
PRK12494	172	PRK12494, PRK12494, NADH dehydrogenase subunit J;	9e-12
CHL00012	158	CHL00012, ndhJ, NADH dehydrogenase subunit J	3e-09
COG3262	165	COG3262, HycE, Ni,Fe-hydrogenase III component G [	2e-08

>gnl|CDD|235691 PRK06074, PRK06074, NADH dehydrogenase subunit C; Provisional

 Score =  228 bits (584), Expect = 5e-76
 Identities = 91/183 (49%), Positives = 120/183 (65%), Gaps = 11/183 (6%)

Query: 55  LVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVNLVDIAGM 114
           L +      E LP  I KV +  G EL L +  E ++ VL FL+D    +F  L+D+ G+
Sbjct: 4   LEELVAKLLEKLPDAIGKVTVAFG-ELTLKVPAEKILEVLTFLRDDPELRFEQLIDLTGV 62

Query: 115 DVPSRPNRFEIIYNLLSLRYNSRIRVKTYTDELTPLDSANEVFKAANWYEREIWDMFGVY 174
           D P R  RFE++Y+LLS ++N R+RVK    E   + S  +++ +ANWYERE +D++G+ 
Sbjct: 63  DYPERGKRFEVVYHLLSYKHNVRLRVKVRAPEDPVVPSVVDIWPSANWYEREAYDLYGIV 122

Query: 175 FSNHPDLRRILTDYGFEGHPFRKDFPLSGYVEVRYDDEKKRVVVEPLELAQEFRKFQLET 234
           F  HPDLRRILTDYGFEGHP RKDFPL+GYVEVRYDDE+KRVV EP+ L          +
Sbjct: 123 FEGHPDLRRILTDYGFEGHPLRKDFPLTGYVEVRYDDEQKRVVYEPVTL----------S 172

Query: 235 PWE 237
           PWE
Sbjct: 173 PWE 175

Length = 189

>gnl|CDD|223921 COG0852, NuoC, NADH:ubiquinone oxidoreductase 27 kD subunit [Energy production and conversion]

 Score =  188 bits (479), Expect = 2e-60
 Identities = 83/164 (50%), Positives = 109/164 (66%), Gaps = 5/164 (3%)

Query: 66  LPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVNLVDIAGMDVPSRPNRFEI 125
           L   IE V + +  EL L + P+ ++ VL+ LKD     F +L+D+ G+D P    RFE+
Sbjct: 17  LSTVIETV-VVAEGELTLKVPPDELIDVLKALKDE---GFDHLLDLTGVDYPQETERFEV 72

Query: 126 IYNLLSLRYNSRIRVKTYTDELTP-LDSANEVFKAANWYEREIWDMFGVYFSNHPDLRRI 184
           +Y+LLS + N R+RVK    E  P + S  +++ AANWYERE +DMFG+ F  HPDLRRI
Sbjct: 73  VYHLLSYKDNRRVRVKVRLSEDDPHVPSVTDIWPAANWYEREAYDMFGIVFEGHPDLRRI 132

Query: 185 LTDYGFEGHPFRKDFPLSGYVEVRYDDEKKRVVVEPLELAQEFR 228
           L    +EGHP RKDFPL GYVEVRYD+E K+VV EP+EL  E R
Sbjct: 133 LMPDDWEGHPLRKDFPLRGYVEVRYDEEDKKVVYEPVELIFERR 176

Length = 176

>gnl|CDD|233657 TIGR01961, NuoC_fam, NADH (or F420H2) dehydrogenase, subunit C

 Score =  163 bits (415), Expect = 2e-51
 Identities = 61/119 (51%), Positives = 78/119 (65%), Gaps = 2/119 (1%)

Query: 85  IIPEGVVPVLQFLKDHHTAQFVNLVDIAGMDVPSRPNRFEIIYNLLSLRYNSRIRVKTYT 144
           I  E ++ VL FLKD     F  L D++G+D P    RFE++Y+LLS++ N RIR+K   
Sbjct: 5   IKKEQLLEVLTFLKDPA-LGFELLTDVSGVDYPKE-KRFEVVYHLLSIKKNRRIRLKVRL 62

Query: 145 DELTPLDSANEVFKAANWYEREIWDMFGVYFSNHPDLRRILTDYGFEGHPFRKDFPLSG 203
            E  P+ S   VF  ANWYERE +DM+G+ F  HPDLRRIL    FEGHP RKD+PL+G
Sbjct: 63  SEDDPVPSLTSVFPTANWYERETYDMYGIVFDGHPDLRRILMPDDFEGHPLRKDYPLTG 121

This model describes the C subunit of the NADH dehydrogenase complex I in bacteria, as well as many instances of the corresponding mitochondrial subunit (NADH dehydrogenase subunit 9) and of the F420H2 dehydrogenase in Methanosarcina. Complex I contains subunits designated A-N. This C subunit often occurs as a fusion protein with the D subunit. This model excludes the NAD(P)H and plastoquinone-dependent form of chloroplasts and [Energy metabolism, Electron transport]. Length = 121

>gnl|CDD|201159 pfam00329, Complex1_30kDa, Respiratory-chain NADH dehydrogenase, 30 Kd subunit

 Score =  126 bits (318), Expect = 5e-37
 Identities = 47/107 (43%), Positives = 64/107 (59%), Gaps = 5/107 (4%)

Query: 92  PVLQFLKDHHTAQFVNLVDIAGMDVPSRPNRFEIIYNLLSLRYNSRIRVKTYTDELTP-L 150
            V +FLK+     F  L D+ G+D P    RFE++Y+L SL    R+R+K       P +
Sbjct: 1   EVARFLKED---GFDRLSDLTGVDYPDE-GRFEVVYHLASLGDGERVRLKVKLPRDDPEI 56

Query: 151 DSANEVFKAANWYEREIWDMFGVYFSNHPDLRRILTDYGFEGHPFRK 197
            S  ++F  ANWYERE++DMFG+ F  HPDLRR+L    + GHP RK
Sbjct: 57  PSITDIFPGANWYEREVYDMFGIVFEGHPDLRRLLLPEDWPGHPLRK 103

Length = 103

>gnl|CDD|236965 PRK11742, PRK11742, bifunctional NADH:ubiquinone oxidoreductase subunit C/D; Provisional

 Score =  121 bits (307), Expect = 1e-31
 Identities = 52/136 (38%), Positives = 74/136 (54%), Gaps = 9/136 (6%)

Query: 73  VQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVNLVDIAGMDVPSRPNR-------FEI 125
           VQ T      + +  E ++ VL+FL+      +V L D+ G+D   R +R       F +
Sbjct: 16  VQATRTGIPVVWVKREQLLEVLRFLR-KLPKPYVMLFDLHGIDERLRTHREGLPAADFTV 74

Query: 126 IYNLLSLRYNSRIRVKTYTDELTP-LDSANEVFKAANWYEREIWDMFGVYFSNHPDLRRI 184
            Y+L+S+  N  I +K    E    + +  ++F  ANWYERE WDMFG+ F  HP LRRI
Sbjct: 75  FYHLISIERNRDIMLKVALSENDLHVPTITKIFPNANWYERETWDMFGITFDGHPHLRRI 134

Query: 185 LTDYGFEGHPFRKDFP 200
           L    +EGHP RKD+P
Sbjct: 135 LMPPTWEGHPLRKDYP 150

Length = 575

>gnl|CDD|181449 PRK08491, PRK08491, NADH dehydrogenase subunit C; Provisional

 Score =  112 bits (281), Expect = 1e-29
 Identities = 57/166 (34%), Positives = 87/166 (52%), Gaps = 9/166 (5%)

Query: 38  EARPTIRKPIDEVARSHLVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFL 97
            A PT +  ++       ++   Y  EIL  YIE       D+  + I  +    VL+ L
Sbjct: 22  VAPPTPKSYVEGSVFEKDLNHLSYKVEILESYIEL------DQAVIWIKKDDNFKVLKIL 75

Query: 98  KDHHTAQFVNLVDIAGMDVPSRPNRFEIIYNLLSLRYNSRIRVKTYTDELTPLDSANEVF 157
           K      +  L +++ +D  ++   FE+ Y LLS+    R+RVK +  E   L S + +F
Sbjct: 76  K---HLGYECLSEMSAIDFLAKKGGFEVFYQLLSMSKRKRVRVKCFLKEKEALQSVSFLF 132

Query: 158 KAANWYEREIWDMFGVYFSNHPDLRRILTDYGFEGHPFRKDFPLSG 203
           K+ANW ERE++DMFG+  +NHP L+RIL    + GHP  K +PL G
Sbjct: 133 KSANWSEREMYDMFGIVINNHPYLKRILMPDDWVGHPLLKSYPLKG 178

Length = 263

>gnl|CDD|183955 PRK13292, PRK13292, trifunctional NADH dehydrogenase I subunit B/C/D; Provisional

 Score =  114 bits (287), Expect = 9e-29
 Identities = 58/135 (42%), Positives = 77/135 (57%), Gaps = 6/135 (4%)

Query: 72  KVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVNLVDIAGMDVPSRPNR-----FEII 126
           ++   + D L     PE V  VL+ LK   ++ F  L D+A +D   R +R     F + 
Sbjct: 237 RLDEGATDMLTYRCPPELVPEVLRHLKKRASSPFRRLEDLAAVDESCRRDREKFPDFTVN 296

Query: 127 YNLLSLRYNSRIRVKTYTDELTP-LDSANEVFKAANWYEREIWDMFGVYFSNHPDLRRIL 185
           Y+LLS      +R+KT     TP L SA  VF AANWYERE +DMFG+ F+ HP+LRRIL
Sbjct: 297 YHLLSFDTPGHVRIKTELRGRTPELPSATGVFPAANWYEREAFDMFGIRFAGHPNLRRIL 356

Query: 186 TDYGFEGHPFRKDFP 200
               +EGHP RK+ P
Sbjct: 357 MPPDWEGHPLRKEHP 371

Length = 788

>gnl|CDD|181115 PRK07785, PRK07785, NADH dehydrogenase subunit C; Provisional

 Score =  103 bits (258), Expect = 1e-26
 Identities = 53/152 (34%), Positives = 81/152 (53%), Gaps = 7/152 (4%)

Query: 63  AEILPKY---IEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVNLVDIAGMDVP-S 118
            E LP++   IE+V +  G EL L +  E +V V Q L+D    +F   + ++G+  P  
Sbjct: 71  EEALPEFADAIERVVVDRG-ELTLHVRREHLVEVAQTLRDDPALRFELCLGVSGVHYPHD 129

Query: 119 RPNRFEIIYNLLSLRYNSRIRVKTYTDELTP-LDSANEVFKAANWYEREIWDMFGVYFSN 177
                  +Y+L S+ +N RIR++    +  P + S   V+   +W+ERE +D FG+ F  
Sbjct: 130 TGRELHAVYHLTSITHNRRIRLEVAVPDADPHIPSLVSVYPTNDWHERETYDFFGIVFDG 189

Query: 178 HPDLRRILTDYGFEGHPFRKDFPLSGYVEVRY 209
           HP L RI     + GHP RKD+PL G + V Y
Sbjct: 190 HPALTRIEMPDDWVGHPQRKDYPLGG-IPVEY 220

Length = 235

>gnl|CDD|236081 PRK07735, PRK07735, NADH dehydrogenase subunit C; Validated

 Score = 74.2 bits (182), Expect = 3e-15
 Identities = 45/132 (34%), Positives = 66/132 (50%), Gaps = 7/132 (5%)

Query: 69  YIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVNLVDIAGMDVPSRPNRFEIIYN 128
           YI K+   S D   L++ PE    V + L+ H    F  L ++ G D  +     E+  +
Sbjct: 298 YINKL---SKDVPTLVVEPEKYYEVAELLRFHEQLAFDYLSELHGTDFVTH---MEVYVH 351

Query: 129 LLSLRYNSRIRVKTYTDELTP-LDSANEVFKAANWYEREIWDMFGVYFSNHPDLRRILTD 187
           L S      + VK   D   P ++S   ++K ANW ERE +D+ G+ F  HP+L RIL  
Sbjct: 352 LYSYGKRQSVAVKVKLDREAPQVESVTPLWKGANWPEREAYDLLGIVFKGHPNLSRILLP 411

Query: 188 YGFEGHPFRKDF 199
             + GHP RKD+
Sbjct: 412 DDWVGHPLRKDY 423

Length = 430

>gnl|CDD|183557 PRK12494, PRK12494, NADH dehydrogenase subunit J; Provisional

 Score = 61.5 bits (150), Expect = 9e-12
 Identities = 25/63 (39%), Positives = 39/63 (61%), Gaps = 1/63 (1%)

Query: 138 IRVKTYTDELTP-LDSANEVFKAANWYEREIWDMFGVYFSNHPDLRRILTDYGFEGHPFR 196
           +R+K +     P + S   ++K A+W ERE +DM+G+ F  HP+L+RIL    + G P R
Sbjct: 98  VRLKVFLPRDDPRVPSVYWIWKGADWQERETYDMYGINFEGHPNLKRILMPEDWVGWPLR 157

Query: 197 KDF 199
           KD+
Sbjct: 158 KDY 160

Length = 172

>gnl|CDD|176955 CHL00012, ndhJ, NADH dehydrogenase subunit J

 Score = 54.3 bits (131), Expect = 3e-09
 Identities = 21/44 (47%), Positives = 31/44 (70%)

Query: 156 VFKAANWYEREIWDMFGVYFSNHPDLRRILTDYGFEGHPFRKDF 199
           V+K+A++ ERE +DM G+ + NHP L+RIL    + G P RKD+
Sbjct: 103 VWKSADFQERESYDMLGISYDNHPRLKRILMPESWIGWPLRKDY 146

Length = 158

>gnl|CDD|225801 COG3262, HycE, Ni,Fe-hydrogenase III component G [Energy production and conversion]

 Score = 52.1 bits (125), Expect = 2e-08
 Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 3/68 (4%)

Query: 135 NSRIRVKTYTDELTP-LDSANEVFKAANWYEREIWDMFGVYFSNHPDLRRIL--TDYGFE 191
              + VK       P   S   +F AA W+EREI DM+G+     PD RR++   D+   
Sbjct: 84  KCWVIVKVSVPADNPEFPSVAPIFPAALWFEREIRDMYGLDPVGAPDPRRLVLPDDWPEG 143

Query: 192 GHPFRKDF 199
            +P RKD 
Sbjct: 144 IYPLRKDA 151

Length = 165

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	265
KOG1713|consensus	191		100.0
COG0852	176	NuoC NADH:ubiquinone oxidoreductase 27 kD subunit	100.0
PRK06074	189	NADH dehydrogenase subunit C; Provisional	100.0
PRK07785	235	NADH dehydrogenase subunit C; Provisional	100.0
PRK07735	430	NADH dehydrogenase subunit C; Validated	100.0
CHL00012	158	ndhJ NADH dehydrogenase subunit J	100.0
PRK08491	263	NADH dehydrogenase subunit C; Provisional	100.0
TIGR01961	121	NuoC_fam NADH (or F420H2) dehydrogenase, subunit C	100.0
PRK12494	172	NADH dehydrogenase subunit J; Provisional	100.0
PRK11742	575	bifunctional NADH:ubiquinone oxidoreductase subuni	100.0
PRK13292	788	trifunctional NADH dehydrogenase I subunit B/C/D;	100.0
PF00329	103	Complex1_30kDa: Respiratory-chain NADH dehydrogena	100.0
COG3262	165	HycE Ni,Fe-hydrogenase III component G [Energy pro	99.95

>KOG1713|consensus

Probab=100.00  E-value=4.7e-67  Score=446.59  Aligned_cols=189  Identities=75%  Similarity=1.276  Sum_probs=184.9

Q ss_pred             HHHHHHHHHHHHCccceEEEEEeeCCEEEEEEcCCCHHHHHHHhhhCcCCCcccEEEEEEEeCCCCCCcEEEEEEEeeec
Q psy15771         54 HLVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVNLVDIAGMDVPSRPNRFEIIYNLLSLR  133 (265)
Q Consensus        54 ~l~~~~~~l~~~lp~~i~~~~~~~~~~l~i~V~~d~l~~vl~~Lk~~~~~~f~~L~dItavD~~~r~~rFevvY~l~s~~  133 (265)
                      .+..||.+.+++||+.+++++..+.+++.+.+.++.+.+++.|||++..++|..+.||+|+|.+.+.++|+|+|+++|..
T Consensus         3 q~~~fg~ya~e~Lpk~~~k~~~~~~~~lei~~~~~~~i~vl~flk~h~y~r~q~~~Diagvdvp~rk~rfevvynl~svr   82 (191)
T KOG1713|consen    3 QLTLFGKYAAECLPKRVQKVQYQAGDELEILIHPDGVIPVLLFLKGHTYARFQNLYDIAGVDVPTRKNRFEVVYNLLSVR   82 (191)
T ss_pred             chhHHHHHHHHhhhHHHHhhhhhcccceeeecCCCceeEEEeeeecccceeeeEeEeecCCCcccccceeEEeeeecccc
Confidence            46779999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEEEEcCCCCCcCchhhhhhcCCchhhhhhhhcCceecCCCCCcccccCCCCCCCCCCCCCCCCCCceeecCccc
Q psy15771        134 YNSRIRVKTYTDELTPLDSANEVFKAANWYEREIWDMFGVYFSNHPDLRRILTDYGFEGHPFRKDFPLSGYVEVRYDDEK  213 (265)
Q Consensus       134 ~n~rI~Vkv~l~e~~~vPSIt~i~p~A~W~EREi~DMfGI~F~GHPDlRRILld~~f~ghPLRKDFpl~G~~e~rYd~~~  213 (265)
                      .|++|+|||+.++.+||||++.+|++|+|+|||+||||||.|.+|||||||||||||+||||||||||+||+|+|||++.
T Consensus        83 ~nsrirVkt~tde~tpI~sv~~vfksad~~EREv~DM~GV~f~nHPdLrRIltdygfeGhPlRKDyplsgy~Evryd~~~  162 (191)
T KOG1713|consen   83 YNSRIRVKTYTDESTPIDSVVSVFKSADWQEREVWDMFGVTFDNHPDLRRILTDYGFEGHPLRKDYPLSGYVEVRYDDEE  162 (191)
T ss_pred             ccceEEEEEecccCccCCcceEeeecCChHHHHHHhhhceeccCCcchhhhcccccccCCcccccCCCCCceEEeccchh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEeccccchhhhhccccCCCcccCCCC
Q psy15771        214 KRVVVEPLELAQEFRKFQLETPWEQFPNF  242 (265)
Q Consensus       214 krvv~epv~l~qe~r~fd~~spwe~~~~~  242 (265)
                      ||||+||+||+||||+|||+||||.+|.+
T Consensus       163 krvv~ep~elaqefr~fd~~spwe~~~~~  191 (191)
T KOG1713|consen  163 KRVVSEPIELAQEFRKFDLNSPWEQFPDF  191 (191)
T ss_pred             ceeecChHHHHHHHhhcccCCchhhcCCC
Confidence            99999999999999999999999999865

>COG0852 NuoC NADH:ubiquinone oxidoreductase 27 kD subunit [Energy production and conversion]

Probab=100.00  E-value=2.5e-51  Score=356.24  Aligned_cols=165  Identities=50%  Similarity=0.866  Sum_probs=150.1

Q ss_pred             HHHHHHCccceEEEEEeeCCEEEEEEcCCCHHHHHHHhhhCcCCCcccEEEEEEEeCCCCCCcEEEEEEEeeecCCeEEE
Q psy15771         60 KYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVNLVDIAGMDVPSRPNRFEIIYNLLSLRYNSRIR  139 (265)
Q Consensus        60 ~~l~~~lp~~i~~~~~~~~~~l~i~V~~d~l~~vl~~Lk~~~~~~f~~L~dItavD~~~r~~rFevvY~l~s~~~n~rI~  139 (265)
                      ..+...+..++...... .+++++.+.++.+.+++.+||+.   +|.+|+++||+||+.++++|+++|||.|+..|.+|+
T Consensus        11 ~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~Lk~~---~f~~l~d~~gvD~~~~~~~FevvYhL~s~~~~~~v~   86 (176)
T COG0852          11 ERLLAELSTVIETVVVA-EGELTLKVPPDELIDVLKALKDE---GFDHLLDLTGVDYPQETERFEVVYHLLSYKDNRRVR   86 (176)
T ss_pred             Hhhhhhhhheeeeecee-eeeEEEecCHHHHHHHHHHHhhh---hHHHHHHhhcccccccCCcEEEEEEeeecCCCCEEE
Confidence            33444455555554443 56899999999999999999996   399999999999998877799999999999999999


Q ss_pred             EEEEcCCCCC-cCchhhhhhcCCchhhhhhhhcCceecCCCCCcccccCCCCCCCCCCCCCCCCCCceeecCcccceEEe
Q psy15771        140 VKTYTDELTP-LDSANEVFKAANWYEREIWDMFGVYFSNHPDLRRILTDYGFEGHPFRKDFPLSGYVEVRYDDEKKRVVV  218 (265)
Q Consensus       140 Vkv~l~e~~~-vPSIt~i~p~A~W~EREi~DMfGI~F~GHPDlRRILld~~f~ghPLRKDFpl~G~~e~rYd~~~krvv~  218 (265)
                      |||.++++++ |||+++|||+|||+|||+||||||.|+||||||||||+++|.|||||||||++||++++||.+.+++++
T Consensus        87 vkv~~~~~~~~vpSv~~I~~~A~W~ERE~yDmfGI~FeGHP~LrRilm~~~~~GhPLRKDfpl~~~~~~~~~~~~~~~~~  166 (176)
T COG0852          87 VKVRLSEDDPHVPSVTDIWPAANWYEREAYDMFGIVFEGHPDLRRILMPDDWEGHPLRKDFPLRGYVEVRYDEEDKKVVY  166 (176)
T ss_pred             EEEEcCCCCCcCCchHHhcccCchhhhhhheeeeeEEcCCcccccccCCCCCCCCCccCCcCCCccEEeccchhhccccc
Confidence            9999998888 999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccchhhhh
Q psy15771        219 EPLELAQEFR  228 (265)
Q Consensus       219 epv~l~qe~r  228 (265)
                      +|+++.|++|
T Consensus       167 ~~~~~~~~~~  176 (176)
T COG0852         167 EPVELIFERR  176 (176)
T ss_pred             ccccccccCC
Confidence            9999998865

>PRK06074 NADH dehydrogenase subunit C; Provisional

Probab=100.00  E-value=4.4e-48  Score=338.97  Aligned_cols=177  Identities=51%  Similarity=0.915  Sum_probs=161.6

Q ss_pred             HHHHHHHHHHHCccceEEEEEeeCCEEEEEEcCCCHHHHHHHhhhCcCCCcccEEEEEEEeCCCCCCcEEEEEEEeeecC
Q psy15771         55 LVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVNLVDIAGMDVPSRPNRFEIIYNLLSLRY  134 (265)
Q Consensus        55 l~~~~~~l~~~lp~~i~~~~~~~~~~l~i~V~~d~l~~vl~~Lk~~~~~~f~~L~dItavD~~~r~~rFevvY~l~s~~~  134 (265)
                      .+++.+.|.+.+|..+..+.. ..+++++.|+++.|.+++.+|+++..++|.+|++|||+|++..+++|+|+|||.+...
T Consensus         4 ~~~~~~~l~~~f~~~~~~~~~-~~~~~~~~v~~~~l~~v~~~L~~~~~~~f~~L~~l~avD~~~~~~~f~vvY~l~s~~~   82 (189)
T PRK06074          4 LEELVAKLLEKLPDAIGKVTV-AFGELTLKVPAEKILEVLTFLRDDPELRFEQLIDLTGVDYPERGKRFEVVYHLLSYKH   82 (189)
T ss_pred             HHHHHHHHHHHccccEEEEEE-eCCeEEEEEcHHHHHHHHHHHHhCcccCCCeEEEEEEEecCCCCCcEEEEEEEecCCC
Confidence            456677788889999888776 4789999999999999999999875478999999999999876689999999999888


Q ss_pred             CeEEEEEEEcCCCCCcCchhhhhhcCCchhhhhhhhcCceecCCCCCcccccCCCCCCCCCCCCCCCCCCceeecCcccc
Q psy15771        135 NSRIRVKTYTDELTPLDSANEVFKAANWYEREIWDMFGVYFSNHPDLRRILTDYGFEGHPFRKDFPLSGYVEVRYDDEKK  214 (265)
Q Consensus       135 n~rI~Vkv~l~e~~~vPSIt~i~p~A~W~EREi~DMfGI~F~GHPDlRRILld~~f~ghPLRKDFpl~G~~e~rYd~~~k  214 (265)
                      +.++++++.++++..+|||+++||+|+|+|||+||||||.|+||||+||||+|++|+|||||||||++||+++.|++..+
T Consensus        83 ~~~v~lk~~~~~~~~ipSIt~i~p~A~w~EREi~DmfGI~f~GhPdlrrlllpe~w~g~PLRKd~~~~~~~~~~~~~~~~  162 (189)
T PRK06074         83 NVRLRVKVRAPEDPVVPSVVDIWPSANWYEREAYDLYGIVFEGHPDLRRILTDYGFEGHPLRKDFPLTGYVEVRYDDEQK  162 (189)
T ss_pred             CeEEEEEEECCCCCCCCchHHhhhccChHHHHHHHhhCceeCCCCCCccccCCCCCCCCCcccCCCCCCceEEEccchhC
Confidence            88999999998764499999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEeccccchhhhhccccCCCcccCCCC
Q psy15771        215 RVVVEPLELAQEFRKFQLETPWEQFPNF  242 (265)
Q Consensus       215 rvv~epv~l~qe~r~fd~~spwe~~~~~  242 (265)
                      +|++.||+++          ||+|.|.-
T Consensus       163 ~~~~~~~~~~----------~~~~~~~~  180 (189)
T PRK06074        163 RVVYEPVTLS----------PWEGTPYV  180 (189)
T ss_pred             eEEEeecccC----------cccCCCcc
Confidence            9999999955          99996643

>PRK07785 NADH dehydrogenase subunit C; Provisional

Probab=100.00  E-value=3.4e-44  Score=323.23  Aligned_cols=152  Identities=34%  Similarity=0.565  Sum_probs=137.3

Q ss_pred             hHHHHHHHHHHHHHHHHHCccceEEEEEeeCCEEEEEEcCCCHHHHHHHhhhCcCCCcccEEEEEEEeCCCC-CCcEEEE
Q psy15771         48 DEVARSHLVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVNLVDIAGMDVPSR-PNRFEII  126 (265)
Q Consensus        48 dev~~~~l~~~~~~l~~~lp~~i~~~~~~~~~~l~i~V~~d~l~~vl~~Lk~~~~~~f~~L~dItavD~~~r-~~rFevv  126 (265)
                      |+|++.+    ++.+ ..++++|..+.+. .+++++.|+++.|.+++.+||++.+++|.+|++||||||+.. +.+|+++
T Consensus        64 d~~~~~l----~~~~-~~f~~ai~~~~~~-~~~~~~~V~~e~l~~v~~~Lkd~~~l~F~~l~~vtgVDyp~~~g~~f~vv  137 (235)
T PRK07785         64 DEVADRL----EEAL-PEFADAIERVVVD-RGELTLHVRREHLVEVAQTLRDDPALRFELCLGVSGVHYPHDTGRELHAV  137 (235)
T ss_pred             HHHHHHH----HHHH-HhhhhheeEEEEe-CCeEEEEEcHHHHHHHHHHHHhCccCCcceEeeEEEEecCCCCCCEEEEE
Confidence            5555554    4444 5688999888774 789999999999999999999987799999999999999864 3689999


Q ss_pred             EEEeeecCCeEEEEEEEcCCCCC-cCchhhhhhcCCchhhhhhhhcCceecCCCCCcccccCCCCCCCCCCCCCCCCCCc
Q psy15771        127 YNLLSLRYNSRIRVKTYTDELTP-LDSANEVFKAANWYEREIWDMFGVYFSNHPDLRRILTDYGFEGHPFRKDFPLSGYV  205 (265)
Q Consensus       127 Y~l~s~~~n~rI~Vkv~l~e~~~-vPSIt~i~p~A~W~EREi~DMfGI~F~GHPDlRRILld~~f~ghPLRKDFpl~G~~  205 (265)
                      |||.|+..+.+|+||+.++++++ ||||++|||+|+|+|||+||||||.|+|||||||||++++|+|||||||||+.|+-
T Consensus       138 YhL~S~~~~~~v~lkv~vp~~~p~iPSIt~I~P~A~W~EREvyDmfGI~FeGHPDLRRiLlpddw~ghPLRKDyPl~G~p  217 (235)
T PRK07785        138 YHLTSITHNRRIRLEVAVPDADPHIPSLVSVYPTNDWHERETYDFFGIVFDGHPALTRIEMPDDWVGHPQRKDYPLGGIP  217 (235)
T ss_pred             EEeccCCCCeEEEEEEeccCCCCcCCcchhhcccCCchHHHHHHhcCceeCCCCCCccccCCCCCCCCCCCCCCCCCCCc
Confidence            99999999999999999987666 99999999999999999999999999999999999999999999999999999964

>PRK07735 NADH dehydrogenase subunit C; Validated

Probab=100.00  E-value=1.8e-43  Score=337.22  Aligned_cols=144  Identities=31%  Similarity=0.506  Sum_probs=125.8

Q ss_pred             HHHHHHHHHHHCccceEEEEE---eeCCEEEEEEcCCCHHHHHHHhhhCcCCCcccEEEEEEEeCCCCCCcEEEEEEEee
Q psy15771         55 LVDFGKYCAEILPKYIEKVQI---TSGDELELLIIPEGVVPVLQFLKDHHTAQFVNLVDIAGMDVPSRPNRFEIIYNLLS  131 (265)
Q Consensus        55 l~~~~~~l~~~lp~~i~~~~~---~~~~~l~i~V~~d~l~~vl~~Lk~~~~~~f~~L~dItavD~~~r~~rFevvY~l~s  131 (265)
                      +..+.+.|.+.|+..|....+   ...++++|+|.+++|..++.+|+++..++|.+|++||||||+   ++|+|+|||+|
T Consensus       278 l~~l~~~L~e~fg~~i~~~~~i~~~~~d~lti~V~~e~L~eV~~~Lrd~~~l~Fd~LsdLtGVDy~---~rFeVVYhLlS  354 (430)
T PRK07735        278 LNKYVEVIKEKLGEDVLEDSYINKLSKDVPTLVVEPEKYYEVAELLRFHEQLAFDYLSELHGTDFV---THMEVYVHLYS  354 (430)
T ss_pred             HHHHHHHHHHHhhhhhhhhhhhccccCCceEEEEcHHHHHHHHHHHHhCcccCCCeeeeEEeEecC---CcEEEEEEEEe
Confidence            444455555555555544332   136799999999999999999999877899999999999997   59999999999


Q ss_pred             ecCCeEEEEEEEcCCCCC-cCchhhhhhcCCchhhhhhhhcCceecCCCCCcccccCCCCCCCCCCCCCCC
Q psy15771        132 LRYNSRIRVKTYTDELTP-LDSANEVFKAANWYEREIWDMFGVYFSNHPDLRRILTDYGFEGHPFRKDFPL  201 (265)
Q Consensus       132 ~~~n~rI~Vkv~l~e~~~-vPSIt~i~p~A~W~EREi~DMfGI~F~GHPDlRRILld~~f~ghPLRKDFpl  201 (265)
                      +..|.+|+|+|.++.+++ ||||++|||+|+|||||+||||||.|+|||||||||+|++|+||||||||+.
T Consensus       355 ~~~n~rV~VKv~l~~d~P~VPSIt~I~P~AnW~EREa~DMFGI~FeGHPDLRRILLpddw~GhPLRKDF~~  425 (430)
T PRK07735        355 YGKRQSVAVKVKLDREAPQVESVTPLWKGANWPEREAYDLLGIVFKGHPNLSRILLPDDWVGHPLRKDYEP  425 (430)
T ss_pred             cCCCCEEEEEEecCCCCCCCCChHHhhccCChHHHHHHHHhCcccCCCCCCccCCCCCCCCCCCCCCCCCC
Confidence            998999999999987665 9999999999999999999999999999999999999999999999999985

>CHL00012 ndhJ NADH dehydrogenase subunit J

Probab=100.00  E-value=8.5e-42  Score=291.81  Aligned_cols=128  Identities=28%  Similarity=0.480  Sum_probs=118.7

Q ss_pred             eCCEEEEEEcCCCHHHHHHHhhhCcCCCcccEEEEEEEeCCCCCCcEEEEEEEeeecCC----eEEEEEEEcCCCCC-cC
Q psy15771         77 SGDELELLIIPEGVVPVLQFLKDHHTAQFVNLVDIAGMDVPSRPNRFEIIYNLLSLRYN----SRIRVKTYTDELTP-LD  151 (265)
Q Consensus        77 ~~~~l~i~V~~d~l~~vl~~Lk~~~~~~f~~L~dItavD~~~r~~rFevvY~l~s~~~n----~rI~Vkv~l~e~~~-vP  151 (265)
                      ..+.+++.|++++|.+++.+||+   .+|.+|++|||+|++. +++|+++|||.|+..+    .+|+|||.++++++ +|
T Consensus        23 ~~~~~~~~V~~~~l~~v~~~Lk~---~gf~~L~~lt~vD~~~-~~~fevvYhl~s~~~~~~~~~~v~vkv~iprd~p~ip   98 (158)
T CHL00012         23 YQGIETLQIKPEDWHSIAVILYV---YGYNYLRSQCAYDVAP-GGLLASVYHLTRIQYGVDQPEEVCIKVFVPRKNPRIP   98 (158)
T ss_pred             CCCCEEEEEcHHHHHHHHHHHHH---cCCCceeEEEEEEcCC-CCeEEEEEEEEecccCCCCceEEEEEEEcCCCCCCCC
Confidence            35789999999999999999996   5799999999999865 6799999999998653    68999999997776 99


Q ss_pred             chhhhhhcCCchhhhhhhhcCceecCCCCCcccccCCCCCCCCCCCCCCCCCCceee
Q psy15771        152 SANEVFKAANWYEREIWDMFGVYFSNHPDLRRILTDYGFEGHPFRKDFPLSGYVEVR  208 (265)
Q Consensus       152 SIt~i~p~A~W~EREi~DMfGI~F~GHPDlRRILld~~f~ghPLRKDFpl~G~~e~r  208 (265)
                      ||+++||+|+|+|||+||||||.|+||||+||||++++|+|||||||||++|++|+.
T Consensus        99 Si~~i~p~A~w~ERE~~DmfGI~F~GhPdlrrillpedw~g~PLRKD~~~~~~~e~~  155 (158)
T CHL00012         99 SVFWVWKSADFQERESYDMLGISYDNHPRLKRILMPESWIGWPLRKDYIAPNFYEIQ  155 (158)
T ss_pred             chHHhhhCCChHHHHHHHHcCcccCCCCCCccccCCCCCCCCCCCCCCCCCCceeec
Confidence            999999999999999999999999999999999999999999999999999999875

>PRK08491 NADH dehydrogenase subunit C; Provisional

Probab=100.00  E-value=4.3e-40  Score=300.92  Aligned_cols=129  Identities=36%  Similarity=0.642  Sum_probs=120.3

Q ss_pred             eCCEEEEEEcCCCHHHHHHHhhhCcCCCcccEEEEEEEeCCCCCCcEEEEEEEeeecCCeEEEEEEEcCCCCCcCchhhh
Q psy15771         77 SGDELELLIIPEGVVPVLQFLKDHHTAQFVNLVDIAGMDVPSRPNRFEIIYNLLSLRYNSRIRVKTYTDELTPLDSANEV  156 (265)
Q Consensus        77 ~~~~l~i~V~~d~l~~vl~~Lk~~~~~~f~~L~dItavD~~~r~~rFevvY~l~s~~~n~rI~Vkv~l~e~~~vPSIt~i  156 (265)
                      ..+.+++.|++++|.+++.+|++   ++|.+|++|||+|++...++|+|+|||.|+..+.+|+|++.+++++.||||++|
T Consensus        55 ~~~~~~i~V~~e~l~~V~~~Lk~---~gf~~L~~itaVD~~~~~~~FeVvYhL~s~~~~~~V~VKv~v~~~~~IpSIt~I  131 (263)
T PRK08491         55 ELDQAVIWIKKDDNFKVLKILKH---LGYECLSEMSAIDFLAKKGGFEVFYQLLSMSKRKRVRVKCFLKEKEALQSVSFL  131 (263)
T ss_pred             eCCcEEEEEcHHHHHHHHHHHHH---cCCCeEEEEEeEecCCCCCcEEEEEEEeeCCCCcEEEEEEECCCCCCCCchHHh
Confidence            46899999999999999999995   689999999999998777899999999999888899999999876679999999


Q ss_pred             hhcCCchhhhhhhhcCceecCCCCCcccccCCCCCCCCCCCCCCCCCCceee
Q psy15771        157 FKAANWYEREIWDMFGVYFSNHPDLRRILTDYGFEGHPFRKDFPLSGYVEVR  208 (265)
Q Consensus       157 ~p~A~W~EREi~DMfGI~F~GHPDlRRILld~~f~ghPLRKDFpl~G~~e~r  208 (265)
                      ||+|+|+|||+||||||.|+||||+||||+|++|+|||||||||+.|.---+
T Consensus       132 fpsAnW~ERE~~DMFGI~FeGHPDlRRiLLpedw~ghPLRKdfPl~g~e~a~  183 (263)
T PRK08491        132 FKSANWSEREMYDMFGIVINNHPYLKRILMPDDWVGHPLLKSYPLKGDEFAQ  183 (263)
T ss_pred             hhcCCchHHHHHHhhCceeCCCCCCcccCCCCCCCCCCcCCCCCCCCccccC
Confidence            9999999999999999999999999999999999999999999999974444

>TIGR01961 NuoC_fam NADH (or F420H2) dehydrogenase, subunit C

Probab=100.00  E-value=9.8e-39  Score=260.10  Aligned_cols=120  Identities=51%  Similarity=0.915  Sum_probs=110.4

Q ss_pred             EEEEcCCCHHHHHHHhhhCcCCCcccEEEEEEEeCCCCCCcEEEEEEEeeecCCeEEEEEEEcCCCCCcCchhhhhhcCC
Q psy15771         82 ELLIIPEGVVPVLQFLKDHHTAQFVNLVDIAGMDVPSRPNRFEIIYNLLSLRYNSRIRVKTYTDELTPLDSANEVFKAAN  161 (265)
Q Consensus        82 ~i~V~~d~l~~vl~~Lk~~~~~~f~~L~dItavD~~~r~~rFevvY~l~s~~~n~rI~Vkv~l~e~~~vPSIt~i~p~A~  161 (265)
                      ++.|++++|.+++..|++. +.+|.+|+++||+|++. +++|+++|||.+...+..+++++.++.++++|||+++||+|+
T Consensus         2 ~~~v~~~~l~~v~~~l~~~-~~~~~~l~~i~a~D~~~-~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~ipSis~i~p~A~   79 (121)
T TIGR01961         2 VIWIKKEQLLEVLTFLKDP-ALGFELLTDVSGVDYPK-EKRFEVVYHLLSIKKNRRIRLKVRLSEDDPVPSLTSVFPTAN   79 (121)
T ss_pred             EEEEeHHHHHHHHHHHHhc-cCCCCeEeEEEEEecCC-CCeEEEEEEEEeCCCCcEEEEEEECCCCCCCCchHHhhhccc
Confidence            5788999999999999964 46888899999999874 468999999999887888999999987667999999999999


Q ss_pred             chhhhhhhhcCceecCCCCCcccccCCCCCCCCCCCCCCCCC
Q psy15771        162 WYEREIWDMFGVYFSNHPDLRRILTDYGFEGHPFRKDFPLSG  203 (265)
Q Consensus       162 W~EREi~DMfGI~F~GHPDlRRILld~~f~ghPLRKDFpl~G  203 (265)
                      |+|||++|||||.|+||||+||||++++|++|||||||++.|
T Consensus        80 ~~EREi~DmfGi~f~Ghpd~rr~ll~~~~~~~PLrKd~~~~~  121 (121)
T TIGR01961        80 WYERETYDMYGIVFDGHPDLRRILMPDDFEGHPLRKDYPLTG  121 (121)
T ss_pred             HHHHHHHhhcCcEeCCCCCCccccCCCCCCCCCcccCcCCCC
Confidence            999999999999999999999999999999999999999987

This model describes the C subunit of the NADH dehydrogenase complex I in bacteria, as well as many instances of the corresponding mitochondrial subunit (NADH dehydrogenase subunit 9) and of the F420H2 dehydrogenase in Methanosarcina. Complex I contains subunits designated A-N. This C subunit often occurs as a fusion protein with the D subunit. This model excludes the NAD(P)H and plastoquinone-dependent form of chloroplasts and

>PRK12494 NADH dehydrogenase subunit J; Provisional

Probab=100.00  E-value=2.3e-38  Score=274.26  Aligned_cols=145  Identities=26%  Similarity=0.445  Sum_probs=126.6

Q ss_pred             HHHHHHHH-CccceEEEEEeeCCEEEEEEcCCCHHHHHHHhhhCcCCCcccEEEEEEEeCCCCCCcEEEEEEEeeecCC-
Q psy15771         58 FGKYCAEI-LPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVNLVDIAGMDVPSRPNRFEIIYNLLSLRYN-  135 (265)
Q Consensus        58 ~~~~l~~~-lp~~i~~~~~~~~~~l~i~V~~d~l~~vl~~Lk~~~~~~f~~L~dItavD~~~r~~rFevvY~l~s~~~n-  135 (265)
                      ....|.+. ++..+.++.  +.+...+.|+++.|.+++.+|++.   +|.+|.+++|+|++. +++|.++||+.|+..+ 
T Consensus        19 ~~~~~~~~~~~~~~~~~~--~~~~~~~~V~~~~l~~v~~~L~~~---g~~~l~~~~~vD~~~-~~~~~vvY~l~s~~~~~   92 (172)
T PRK12494         19 VSQWLTENGFEHESLGPD--HLGVEIIKVEPDFLLPIATALYAY---GFNYLQCQGGYDEGP-GKELVSFYHLIKVSDNA   92 (172)
T ss_pred             HHHHHHHcCCCccccccc--cCCCEEEEEcHHHHHHHHHHHHHC---CCCEEEEEEeEccCC-CCEEEEEEEEccccccC
Confidence            34456666 777766644  567889999999999999999974   688899999999864 5789999999887543 


Q ss_pred             ---eEEEEEEEcCCCCC-cCchhhhhhcCCchhhhhhhhcCceecCCCCCcccccCCCCCCCCCCCCCCCCCCceee
Q psy15771        136 ---SRIRVKTYTDELTP-LDSANEVFKAANWYEREIWDMFGVYFSNHPDLRRILTDYGFEGHPFRKDFPLSGYVEVR  208 (265)
Q Consensus       136 ---~rI~Vkv~l~e~~~-vPSIt~i~p~A~W~EREi~DMfGI~F~GHPDlRRILld~~f~ghPLRKDFpl~G~~e~r  208 (265)
                         .+++|||.++.+++ +|||+++||+|+|+|||+||||||.|+||||+||||+|++|+||||||||+++||.|+.
T Consensus        93 ~~~~~v~lkv~~~~~~p~iPSIt~i~p~A~w~EREi~DmfGI~FeGHPDlRriLlpe~w~~~PLRKDf~~~~~~~~~  169 (172)
T PRK12494         93 DKPREVRLKVFLPRDDPRVPSVYWIWKGADWQERETYDMYGINFEGHPNLKRILMPEDWVGWPLRKDYIQPDFYELQ  169 (172)
T ss_pred             CCceEEEEEEEccCCCCCCCchhHhhhcCChHHHHHHHhcCceeCCCCCCccccCCCCCCCCCCCCCCCCCCceeee
Confidence               57889999887654 99999999999999999999999999999999999999999999999999999999974

>PRK11742 bifunctional NADH:ubiquinone oxidoreductase subunit C/D; Provisional

Probab=100.00  E-value=6e-36  Score=298.97  Aligned_cols=143  Identities=35%  Similarity=0.595  Sum_probs=128.3

Q ss_pred             HHHHHHCccceEEEEEeeCCEEEEEEcCCCHHHHHHHhhhCcCCCcccEEEEEEEeCCC-------CCCcEEEEEEEeee
Q psy15771         60 KYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVNLVDIAGMDVPS-------RPNRFEIIYNLLSL  132 (265)
Q Consensus        60 ~~l~~~lp~~i~~~~~~~~~~l~i~V~~d~l~~vl~~Lk~~~~~~f~~L~dItavD~~~-------r~~rFevvY~l~s~  132 (265)
                      +.|.+.+++.+..++....+.++++|++++|.+++.+||+. +++|.+|++|||+|++.       .+++|+++|||.|+
T Consensus         3 ~~l~~~f~~~~~~~~~~~~~~~~~~v~~e~l~~v~~~Lk~~-~~~f~~L~~lt~vD~~~~~~~~~~~~~~fevvYhl~s~   81 (575)
T PRK11742          3 GELRNRFGPDAFTVQATRTGIPVVWVKREQLLEVLRFLRKL-PKPYVMLFDLHGIDERLRTHREGLPAADFTVFYHLISI   81 (575)
T ss_pred             HHHHhhcccceeeeEeccCCcEEEEEcHHHHHHHHHHHhcc-CCCCceEEEEEEEecCcccccccCCCCceEEEEEEEEC
Confidence            34667788777666666678899999999999999999953 57899999999999963       24689999999999


Q ss_pred             cCCeEEEEEEEcCCCCC-cCchhhhhhcCCchhhhhhhhcCceecCCCCCcccccCCCCCCCCCCCCCCCCC
Q psy15771        133 RYNSRIRVKTYTDELTP-LDSANEVFKAANWYEREIWDMFGVYFSNHPDLRRILTDYGFEGHPFRKDFPLSG  203 (265)
Q Consensus       133 ~~n~rI~Vkv~l~e~~~-vPSIt~i~p~A~W~EREi~DMfGI~F~GHPDlRRILld~~f~ghPLRKDFpl~G  203 (265)
                      ..+.+|+|||.++++++ +|||+++||+|+|+|||+||||||.|+||||+||||++++|+|||||||||+.+
T Consensus        82 ~~~~~v~vkv~~~~~~p~ipSi~~i~p~A~w~ERE~~d~fGi~f~ghPdlr~~l~~~d~~~~PlRKd~~~~~  153 (575)
T PRK11742         82 ERNRDIMLKVALSENDLHVPTITKIFPNANWYERETWDMFGITFDGHPHLRRILMPPTWEGHPLRKDYPARA  153 (575)
T ss_pred             CCCcEEEEEEEecCCCCCCCchhhhcccCCchHHHHHHhcCceeCCCCCCcccCCCCCCCCCCCCCCCCCCc
Confidence            88999999999997775 999999999999999999999999999999999999999999999999999877

>PRK13292 trifunctional NADH dehydrogenase I subunit B/C/D; Provisional

Probab=100.00  E-value=5.5e-35  Score=299.93  Aligned_cols=147  Identities=39%  Similarity=0.592  Sum_probs=130.7

Q ss_pred             HHHHHHHHHCccceEEEEEeeCCEEEEEEcCCCHHHHHHHhhhCcCCCcccEEEEEEEeCCCC-----CCcEEEEEEEee
Q psy15771         57 DFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVNLVDIAGMDVPSR-----PNRFEIIYNLLS  131 (265)
Q Consensus        57 ~~~~~l~~~lp~~i~~~~~~~~~~l~i~V~~d~l~~vl~~Lk~~~~~~f~~L~dItavD~~~r-----~~rFevvY~l~s  131 (265)
                      .+.+.|.+.++..+..... ..+++++.|++++|.+++.+||++.+++|.+|++||||||+.+     .++|+++|||.|
T Consensus       223 ~l~~~l~~~f~~~v~~~~~-~~~~~~~~v~~e~l~~v~~~Lk~~~~~~f~~L~ditaVD~~~~~~~~~~~~f~vvY~l~s  301 (788)
T PRK13292        223 GLAGELEGAFGDDVRLDEG-ATDMLTYRCPPELVPEVLRHLKKRASSPFRRLEDLAAVDESCRRDREKFPDFTVNYHLLS  301 (788)
T ss_pred             HHHHHHHHHcccceEeeee-cCCcEEEEEcHHHHHHHHHHHHhCcCCCCceeeeEEEEeCCcccccCcCCcEEEEEEEEe
Confidence            3556677778876654443 3578999999999999999999987789999999999999742     469999999999


Q ss_pred             ecCCeEEEEEEEcCCCCC-cCchhhhhhcCCchhhhhhhhcCceecCCCCCcccccCCCCCCCCCCCCCCCCCC
Q psy15771        132 LRYNSRIRVKTYTDELTP-LDSANEVFKAANWYEREIWDMFGVYFSNHPDLRRILTDYGFEGHPFRKDFPLSGY  204 (265)
Q Consensus       132 ~~~n~rI~Vkv~l~e~~~-vPSIt~i~p~A~W~EREi~DMfGI~F~GHPDlRRILld~~f~ghPLRKDFpl~G~  204 (265)
                      +..+.+|+||+.++++++ +|||+++||+|+|+|||+||||||.|+||||+||||+|++|++||||||||+.+.
T Consensus       302 ~~~~~~i~vkv~~~~~~p~~pSl~~i~p~A~~~ERE~~D~~Gi~f~ghPdlrr~l~~~~w~~~PLRkD~~~~~~  375 (788)
T PRK13292        302 FDTPGHVRIKTELRGRTPELPSATGVFPAANWYEREAFDMFGIRFAGHPNLRRILMPPDWEGHPLRKEHPFRAT  375 (788)
T ss_pred             CCCCcEEEEEEEeCCCCCCCCchHhhhccCChhHHHHHHhcCceeCCCCCCccccCCccCCCCCCCCCCCCCcc
Confidence            988899999999987765 9999999999999999999999999999999999999999999999999998763

>PF00329 Complex1_30kDa: Respiratory-chain NADH dehydrogenase, 30 Kd subunit; InterPro: IPR001268 NADH:ubiquinone oxidoreductase (complex I) (1

Probab=100.00  E-value=3.1e-35  Score=233.62  Aligned_cols=102  Identities=45%  Similarity=0.798  Sum_probs=84.2

Q ss_pred             HHHHHhhhCcCCCcccEEEEEEEeCCCCCCcEEEEEEEeeecCCeEEEEEEEcCCCCC-cCchhhhhhcCCchhhhhhhh
Q psy15771         92 PVLQFLKDHHTAQFVNLVDIAGMDVPSRPNRFEIIYNLLSLRYNSRIRVKTYTDELTP-LDSANEVFKAANWYEREIWDM  170 (265)
Q Consensus        92 ~vl~~Lk~~~~~~f~~L~dItavD~~~r~~rFevvY~l~s~~~n~rI~Vkv~l~e~~~-vPSIt~i~p~A~W~EREi~DM  170 (265)
                      +++++||+.   +|.+|++|||+|++..+ +|+++|+|.+...+..++|++.++.+++ ||||+++||+|+|+|||+|||
T Consensus         1 e~~~~L~~~---~~~~l~~i~~~D~~~~~-~~~v~y~~~~~~~~~~~~v~~~v~~~~~~ipSit~i~p~A~~~ERE~~Dm   76 (103)
T PF00329_consen    1 EVAKFLKDE---GGARLVTITAVDYPEEG-RFEVVYHFASDGDGTLVRVKVKVPRENPEIPSITPIFPAADWYEREIYDM   76 (103)
T ss_dssp             -HHHHHHHT---T--EEEEEEEEE-TTST-SEEEEEEEEETTTTEEEEEEEEE-TTS-EEE--TTT-TTHHHHHHHHHHH
T ss_pred             CHHHHHHHC---CCCeEEEEEEEECCCCC-eEEEEEEEEECCCCcEEEEEEEeccCCCcccceeEEEcCceecCcHHHhh
Confidence            478999986   67899999999998654 9999999999988888999999985555 999999999999999999999


Q ss_pred             cCceecCCCCCcccccCCCCCCCCCCC
Q psy15771        171 FGVYFSNHPDLRRILTDYGFEGHPFRK  197 (265)
Q Consensus       171 fGI~F~GHPDlRRILld~~f~ghPLRK  197 (265)
                      |||.|+||||+||||++++|++|||||
T Consensus        77 fGI~f~GhPd~rrlll~~~~~~~PLrK  103 (103)
T PF00329_consen   77 FGIRFEGHPDLRRLLLPEDWPGHPLRK  103 (103)
T ss_dssp             CHHECCT-CCGS-SSSSTTSSS-TTST
T ss_pred             cCCEeCCCCCCccccCCCCCCCCCCCC
Confidence            999999999999999999999999998

6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. The 30 kDa subunit from NADH:ubiquinone oxidoreductase is found in both eukaryotes and prokaryotes. In mammals and in Neurospora crassa, it is nuclear-encoded as a precursor form with a transit peptide, while in Paramecium (protein P1), in the Dictyostelium discoideum (Slime mold) it is mitochondrial-encoded and it is chloroplast-encoded in various higher plants. It is also present in bacteria.; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0055114 oxidation-reduction process; PDB: 2YBB_5 3IAS_E 2FUG_E 3I9V_5 3M9S_E 3IAM_5 3MCR_A.

>COG3262 HycE Ni,Fe-hydrogenase III component G [Energy production and conversion]

Probab=99.95  E-value=6.1e-28  Score=205.34  Aligned_cols=136  Identities=27%  Similarity=0.384  Sum_probs=111.3

Q ss_pred             HHHHHHCccceEEEEEeeCCEEEEEEcCCCHHHHHHHhhhCcCCCcccEEEEEEEeCCCCCCcEEEEEEEeeecC--CeE
Q psy15771         60 KYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVNLVDIAGMDVPSRPNRFEIIYNLLSLRY--NSR  137 (265)
Q Consensus        60 ~~l~~~lp~~i~~~~~~~~~~l~i~V~~d~l~~vl~~Lk~~~~~~f~~L~dItavD~~~r~~rFevvY~l~s~~~--n~r  137 (265)
                      ..|.+.+|+.+.+......+.+++.|..+.+.+++++|+...+   .++..+.|.|....++.|.+.| |+++..  +.+
T Consensus        11 ~el~~~fpg~i~~e~~~~~~~~~~~V~~~~l~~~~e~l~~~~d---~~~~~liG~~e~~~~~~~~v~~-fLs~~~a~~~~   86 (165)
T COG3262          11 AELNERFPGVVLDEERQTRSQLTVTVKREYLPDVVEFLYYELD---GWLSVLIGNDEDALNGHFAVYL-FLSMEQAPKCW   86 (165)
T ss_pred             HHHHHhCcchhhhhhhhchhheeEEeeHhhhHHHHHHHHHhhc---ccceeeeccccccccCceeEEE-EEEEccCCCeE
Confidence            3455667764433333335789999999999999999996322   3678889999876566676544 777764  568


Q ss_pred             EEEEEEcCCCCC-cCchhhhhhcCCchhhhhhhhcCceecCCCCCcccccCCCCC-C-CCCCCCC
Q psy15771        138 IRVKTYTDELTP-LDSANEVFKAANWYEREIWDMFGVYFSNHPDLRRILTDYGFE-G-HPFRKDF  199 (265)
Q Consensus       138 I~Vkv~l~e~~~-vPSIt~i~p~A~W~EREi~DMfGI~F~GHPDlRRILld~~f~-g-hPLRKDF  199 (265)
                      |.|++.++.+++ +|||++++|+|.|+||||.|||||.|.||||.|||++|++|+ | ||||||+
T Consensus        87 v~vk~~vp~dnpe~pSva~i~P~A~wfEREi~Dm~Gl~~vg~PD~RRLvLpddwPeg~yPLRkd~  151 (165)
T COG3262          87 VIVKVSVPADNPEFPSVAPIFPAALWFEREIRDMYGLDPVGAPDPRRLVLPDDWPEGIYPLRKDA  151 (165)
T ss_pred             EEEEEecCCCCCcCCccccccchhHHHHHHHHHhhCcccCCCCCcceeeccccCCcccccchhhc
Confidence            999999998887 999999999999999999999999999999999999999996 5 9999986

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	265
2fug_5	207	Crystal Structure Of The Hydrophilic Domain Of Resp		8e-18
3mcr_A	213	Crystal Structure Of Nadh Dehydrogenase Subunit C (		4e-08

>pdb|2FUG|5 Chain 5, Crystal Structure Of The Hydrophilic Domain Of Respiratory Complex I From Thermus Thermophilus Length = 207

Iteration: 1
 Score = 87.0 bits (214), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 49/114 (42%), Positives = 68/114 (59%), Gaps = 11/114 (9%)
Query: 100 HHTAQFVN-LVDIAGMDVPS----RPNRFEIIYNLLSLRY-----NSRIRVKTYTDELTP 149
           H+ A   N L DI G+D  +    RP RF ++Y L+SL        SR  V+ Y  E  P
Sbjct: 40  HYKAMGFNFLADIVGLDYLTYPDPRPERFAVVYELVSLPGWKDGDGSRFFVRVYVPEEDP 99
Query: 150 -LDSANEVFKAANWYEREIWDMFGVYFSNHPDLRRILTDYGFEGHPFRKDFPLS 202
            L +  +++ +AN+ ERE++D+FG+ F  HPDLR+ILT    EGHP RKD+PL 
Sbjct: 100 RLPTVTDLWGSANFLEREVYDLFGIVFEGHPDLRKILTPEDLEGHPLRKDYPLG 153

>pdb|3MCR|A Chain A, Crystal Structure Of Nadh Dehydrogenase Subunit C (Tfu_2693) From Thermobifida Fusca Yx-Er1 At 2.65 A Resolution Length = 213

Iteration: 1
 Score = 55.1 bits (131), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 56/116 (48%), Gaps = 3/116 (2%)
Query: 70  IEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVNLVDIAGMDVP-SRPNRFEIIYN 128
           I +V +  G E+   +  E ++ V   L+D    +F   + + G+  P    N    +Y 
Sbjct: 99  ISRVVVDRG-EITFHVQREHLLDVATRLRDDPALRFELCLGVTGVHYPEDEGNELHAVYA 157
Query: 129 LLSLRYNSRIRVKTYTDELTP-LDSANEVFKAANWYEREIWDMFGVYFSNHPDLRR 183
           L S+ +N  IR++    +  P + S   V+   +W+ERE WD FG+ F  HP L R
Sbjct: 158 LRSITHNYEIRLEVSCPDSDPHIPSIVSVYPTNDWHEREAWDFFGIIFDGHPALTR 213

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	265
3i9v_5	207	NADH-quinone oxidoreductase subunit 5; electron tr	1e-78
3mcr_A	213	NADH dehydrogenase, subunit C; structural genomics	1e-58
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05

>3i9v_5 NADH-quinone oxidoreductase subunit 5; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_5* 2fug_5* 3iam_5* 3ias_5* 3m9s_5* Length = 207

 Score =  235 bits (602), Expect = 1e-78
 Identities = 59/211 (27%), Positives = 90/211 (42%), Gaps = 23/211 (10%)

Query: 56  VDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVNLVDIAGMD 115
           +   +   E   K    ++      L +++  E     +   K      F  L DI G+D
Sbjct: 1   MRLERVLEEARAKGY-PIEDNGLGNLWVVLPRERFKEEMAHYKA---MGFNFLADIVGLD 56

Query: 116 VPS----RPNRFEIIYNLLSLRY-----NSRIRVKTYTDELTP-LDSANEVFKAANWYER 165
             +    RP RF ++Y L+SL        SR  V+ Y  E  P L +  +++ +AN+ ER
Sbjct: 57  YLTYPDPRPERFAVVYELVSLPGWKDGDGSRFFVRVYVPEEDPRLPTVTDLWGSANFLER 116

Query: 166 EIWDMFGVYFSNHPDLRRILTDYGFEGHPFRKDFPLSG----YVEVRYDDEKKRVVV--- 218
           E++D+FG+ F  HPDLR+ILT    EGHP RKD+PL      + E RY    +       
Sbjct: 117 EVYDLFGIVFEGHPDLRKILTPEDLEGHPLRKDYPLGETPTLFREGRYIIPAEFRAALTG 176

Query: 219 --EPLELAQEFRKFQLETPWEQFPNFRNTPG 247
               L   +   +    + W      R   G
Sbjct: 177 KDPGLTFYKGGSRKGYRSLWADLKKAREVKG 207

>3mcr_A NADH dehydrogenase, subunit C; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.65A {Thermobifida fusca} Length = 213

 Score =  184 bits (469), Expect = 1e-58
 Identities = 44/161 (27%), Positives = 70/161 (43%), Gaps = 5/161 (3%)

Query: 25  RLMTTAATTANTTEARPTIRKPIDEVARSHLVDFGKYCAEILPKYIEKVQITSGDELELL 84
           R +  AA    +  + P      DEVA + L    K         I +V +  G E+   
Sbjct: 56  RHVPAAAQRPYSDPSDPRTAY-FDEVADA-LERSLKEIGTPYDTAISRVVVDRG-EITFH 112

Query: 85  IIPEGVVPVLQFLKDHHTAQFVNLVDIAGMDVPSRP-NRFEIIYNLLSLRYNSRIRVKTY 143
           +  E ++ V   L+D    +F   + + G+  P    N    +Y L S+ +N  IR++  
Sbjct: 113 VQREHLLDVATRLRDDPALRFELCLGVTGVHYPEDEGNELHAVYALRSITHNYEIRLEVS 172

Query: 144 TDELTP-LDSANEVFKAANWYEREIWDMFGVYFSNHPDLRR 183
             +  P + S   V+   +W+ERE WD FG+ F  HP L R
Sbjct: 173 CPDSDPHIPSIVSVYPTNDWHEREAWDFFGIIFDGHPALTR 213

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 3e-05
 Identities = 41/221 (18%), Positives = 68/221 (30%), Gaps = 69/221 (31%)

Query: 58  FGKYC--AEILPKYIEKVQ---------ITSGDELELLIIPEGVVPVLQFLKDHHTAQFV 106
            GK     ++   Y  KVQ         +   +       PE V+ +LQ L       + 
Sbjct: 161 SGKTWVALDVCLSY--KVQCKMDFKIFWLNLKNCNS----PETVLEMLQKLLYQIDPNWT 214

Query: 107 NLVDIAGMDVPSRPNRFEIIYNLLSLRYNSRIRVKTYTDELTPLDSANEVFKAANWYERE 166
           +  D +     +   R   I   L  R    ++ K Y + L  L     V         +
Sbjct: 215 SRSDHS----SNIKLRIHSIQAELR-RL---LKSKPYENCLLVLL---NV-----Q-NAK 257

Query: 167 IWDMFGVYFSNHPDLR-RIL--------TDY---GFEGHPFRKDFP-----------LSG 203
            W+ F        +L  +IL        TD+       H                  L  
Sbjct: 258 AWNAF--------NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK 309

Query: 204 YVEVRYDDEKKRVV-VEPLELAQ--EFRKFQLETPWEQFPN 241
           Y++ R  D  + V+   P  L+   E  +  L T W+ + +
Sbjct: 310 YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT-WDNWKH 349

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	265
3i9v_5	207	NADH-quinone oxidoreductase subunit 5; electron tr	100.0
3mcr_A	213	NADH dehydrogenase, subunit C; structural genomics	100.0

>3i9v_5 NADH-quinone oxidoreductase subunit 5; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_5* 2fug_5* 3iam_5* 3ias_5* 3m9s_5*

Probab=100.00  E-value=2.7e-42  Score=305.16  Aligned_cols=128  Identities=39%  Similarity=0.704  Sum_probs=118.4

Q ss_pred             CCEEEEEEcCCCHHHHHHHhhhCcCCCcccEEEEEEEeCCC----CCCcEEEEEEEeeec-----CCeEEEEEEEcCCCC
Q psy15771         78 GDELELLIIPEGVVPVLQFLKDHHTAQFVNLVDIAGMDVPS----RPNRFEIIYNLLSLR-----YNSRIRVKTYTDELT  148 (265)
Q Consensus        78 ~~~l~i~V~~d~l~~vl~~Lk~~~~~~f~~L~dItavD~~~----r~~rFevvY~l~s~~-----~n~rI~Vkv~l~e~~  148 (265)
                      .+++++.|++++|.+++.+||+   ++|.+|++|||+|++.    ++++|+++|||+|+.     .|.+|+|||.+++++
T Consensus        22 ~g~~~v~V~~e~l~~v~~~Lk~---~gf~~L~~l~gvD~~~~~~~~~~~f~vvYhl~s~~~~~~~~~~~v~vkv~v~~~~   98 (207)
T 3i9v_5           22 LGNLWVVLPRERFKEEMAHYKA---MGFNFLADIVGLDYLTYPDPRPERFAVVYELVSLPGWKDGDGSRFFVRVYVPEED   98 (207)
T ss_dssp             TSCBEEECCHHHHHHHHHHHHH---TTCCCEEEEEEEECTTCSSCCSSSEEEEEEECCCTTSSSCCCCCEEEEEEECSSC
T ss_pred             CCcEEEEEcHHHHHHHHHHHHH---CCCCeEEEEEeEECCccCCCCCCeEEEEEEEeeccccccCCCcEEEEEEEecCCC
Confidence            5889999999999999999997   5899999999999853    357999999999987     788999999999877


Q ss_pred             C-cCchhhhhhcCCchhhhhhhhcCceecCCCCCcccccCCCCCCCCCCCCCCCCCCceeec
Q psy15771        149 P-LDSANEVFKAANWYEREIWDMFGVYFSNHPDLRRILTDYGFEGHPFRKDFPLSGYVEVRY  209 (265)
Q Consensus       149 ~-vPSIt~i~p~A~W~EREi~DMfGI~F~GHPDlRRILld~~f~ghPLRKDFpl~G~~e~rY  209 (265)
                      + +|||+++||+|+|+|||+||||||.|+||||+||||+|++|+|||||||||+.+. .+.|
T Consensus        99 p~vPSit~i~p~A~w~ERE~~DmfGI~F~GhPdlRRiLl~~~w~ghPLRKDfpl~~~-p~~~  159 (207)
T 3i9v_5           99 PRLPTVTDLWGSANFLEREVYDLFGIVFEGHPDLRKILTPEDLEGHPLRKDYPLGET-PTLF  159 (207)
T ss_dssp             CBCCCCTTTCSTHHHHHHHHHHTSCCBCTTCSCCCCCSSCTTCCSCTTSTTSCCCCC-CEEC
T ss_pred             CcCCchhhhhcccChhHhhhhhhcCcEeCCCCCCccccCCCCCCCCCCCCCCCCcCC-CCcC
Confidence            7 9999999999999999999999999999999999999999999999999999885 4454

>3mcr_A NADH dehydrogenase, subunit C; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.65A {Thermobifida fusca}

Probab=100.00  E-value=5.7e-36  Score=265.47  Aligned_cols=134  Identities=28%  Similarity=0.492  Sum_probs=119.2

Q ss_pred             hHHHHHHHHHHHHHHHHHCccceEEEEEeeCCEEEEEEcCCCHHHHHHHhhhCcCCCcccEEEEEEEeCCC-CCCcEEEE
Q psy15771         48 DEVARSHLVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVNLVDIAGMDVPS-RPNRFEII  126 (265)
Q Consensus        48 dev~~~~l~~~~~~l~~~lp~~i~~~~~~~~~~l~i~V~~d~l~~vl~~Lk~~~~~~f~~L~dItavD~~~-r~~rFevv  126 (265)
                      |+|++.+.++|++.- -.+++.|.++.+. .+++++.|+++.|.+++.+||++.+++|.+|++|||+||+. ++.+|+|+
T Consensus        78 d~v~d~L~e~l~~~~-~~f~~~i~~~~~~-~~eltl~V~~e~l~~v~~~Lkd~~~~~F~~L~dltgVDy~~~~g~rFeVV  155 (213)
T 3mcr_A           78 DEVADALERSLKEIG-TPYDTAISRVVVD-RGEITFHVQREHLLDVATRLRDDPALRFELCLGVTGVHYPEDEGNELHAV  155 (213)
T ss_dssp             HHHHHHHHHHHHHTT-CCHHHHEEEEEEE-TTEEEEEECGGGHHHHHHHHHHCTTTCCCEEEEEEEEECTTSTTCCEEEE
T ss_pred             HHHHHHHHHHHhhcc-cccccceeEEEEE-CCEEEEEEcHHHHHHHHHHHHhCcCCCcceEEEEEeecccccCCCeeEEE
Confidence            677777766666542 1257788888875 78999999999999999999998889999999999999987 34699999


Q ss_pred             EEEeeecCCeEEEEEEEcCCCCC-cCchhhhhhcCCchhhhhhhhcCceecCCCCCcc
Q psy15771        127 YNLLSLRYNSRIRVKTYTDELTP-LDSANEVFKAANWYEREIWDMFGVYFSNHPDLRR  183 (265)
Q Consensus       127 Y~l~s~~~n~rI~Vkv~l~e~~~-vPSIt~i~p~A~W~EREi~DMfGI~F~GHPDlRR  183 (265)
                      |||+|+..|.+|+||+.++++++ ||||++|||+|+|+|||+||||||.|+|||||||
T Consensus       156 YhL~S~~~n~rIrVKv~v~~~~P~vPSIt~I~P~AnW~ERE~~DMFGI~FeGHPDLRR  213 (213)
T 3mcr_A          156 YALRSITHNYEIRLEVSCPDSDPHIPSIVSVYPTNDWHEREAWDFFGIIFDGHPALTR  213 (213)
T ss_dssp             EEEEETTTTEEEEEEEEECTTSCEEECCTTTCTTHHHHHHHHHHHHCCEEETCGGGC-
T ss_pred             EeeeecCCCcEEEEEEEecCCCCccCChhhhhhccCHHHHHHHHhcCceeCCCCCCCC
Confidence            99999999999999999998777 9999999999999999999999999999999998

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	265
d2fug51	196	d.307.1.1 (5:1-196) NADH-quinone oxidoreductase ch	3e-34
d2gf3a1	281	c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bac	0.002

>d2fug51 d.307.1.1 (5:1-196) NADH-quinone oxidoreductase chain 5, Nqo5 {Thermus thermophilus [TaxId: 274]} Length = 196

class: Alpha and beta proteins (a+b)
fold: Nqo5-like
superfamily: Nqo5-like
family: Nqo5-like
domain: NADH-quinone oxidoreductase chain 5, Nqo5
species: Thermus thermophilus [TaxId: 274]

 Score =  120 bits (301), Expect = 3e-34
 Identities = 51/158 (32%), Positives = 79/158 (50%), Gaps = 17/158 (10%)

Query: 72  KVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVNLVDIAGMDVPSRPN----RFEIIY 127
            ++      L +++  E     +   K      F  L DI G+D  + P+    RF ++Y
Sbjct: 16  PIEDNGLGNLWVVLPRERFKEEMAHYKAM---GFNFLADIVGLDYLTYPDPRPERFAVVY 72

Query: 128 NLLSLRY-----NSRIRVKTYTD-ELTPLDSANEVFKAANWYEREIWDMFGVYFSNHPDL 181
            L+SL        SR  V+ Y   E   L +  +++ +AN+ ERE++D+FG+ F  HPDL
Sbjct: 73  ELVSLPGWKDGDGSRFFVRVYVPEEDPRLPTVTDLWGSANFLEREVYDLFGIVFEGHPDL 132

Query: 182 RRILTDYGFEGHPFRKDFPL----SGYVEVRYDDEKKR 215
           R+ILT    EGHP RKD+PL    + + E RY    + 
Sbjct: 133 RKILTPEDLEGHPLRKDYPLGETPTLFREGRYIIPAEF 170

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} Length = 281

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

 Score = 36.6 bits (83), Expect = 0.002
 Identities = 10/68 (14%), Positives = 26/68 (38%), Gaps = 11/68 (16%)

Query: 135 NSRIRVKTYTDELTPLDSANEVFKAANWYEREIWDMFGVYFSN-------HPDLRRILTD 187
              ++++T     T    A+++  +   +  ++     +   +       HP+   ++  
Sbjct: 180 PDSVKIETANGSYT----ADKLIVSMGAWNSKLLSKLNLDIPDEHFIIDLHPEHSNVVIA 235

Query: 188 YGFEGHPF 195
            GF GH F
Sbjct: 236 AGFSGHGF 243

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	265
d2fug51	196	NADH-quinone oxidoreductase chain 5, Nqo5 {Thermus	100.0

>d2fug51 d.307.1.1 (5:1-196) NADH-quinone oxidoreductase chain 5, Nqo5 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Nqo5-like
superfamily: Nqo5-like
family: Nqo5-like
domain: NADH-quinone oxidoreductase chain 5, Nqo5
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=2.2e-42  Score=301.50  Aligned_cols=126  Identities=40%  Similarity=0.706  Sum_probs=110.2

Q ss_pred             EeeCCEEEEEEcCCCHHHHHHHhhhCcCCCcccEEEEEEEeCCC----CCCcEEEEEEEeeec-----CCeEEEEEEEcC
Q psy15771         75 ITSGDELELLIIPEGVVPVLQFLKDHHTAQFVNLVDIAGMDVPS----RPNRFEIIYNLLSLR-----YNSRIRVKTYTD  145 (265)
Q Consensus        75 ~~~~~~l~i~V~~d~l~~vl~~Lk~~~~~~f~~L~dItavD~~~----r~~rFevvY~l~s~~-----~n~rI~Vkv~l~  145 (265)
                      ....+.++|.|+++.|.+++.+||+   ++|.+|++||||||..    .+++|+|+|||.|+.     .+.+|+|||.++
T Consensus        19 ~~~~g~l~I~V~~e~l~evl~~LKe---~gF~~L~dITaVD~~~~~e~~~~rfevvYhL~S~~~~~~~~~~~v~vkv~vp   95 (196)
T d2fug51          19 DNGLGNLWVVLPRERFKEEMAHYKA---MGFNFLADIVGLDYLTYPDPRPERFAVVYELVSLPGWKDGDGSRFFVRVYVP   95 (196)
T ss_dssp             ECSSSCEEEECCSTTHHHHHHHTTT---TTCCCCCCEEEEECTTCSSCCSSSEEEEEEEECCTTSSSCCCCEEEEEEEEC
T ss_pred             eccCCcEEEEEcHHHHHHHHHHHHh---CCCCceeEEEeEcCCCcCcCccceeEEEEEEEEEeeccCCCccEEEEEEEec
Confidence            3346789999999999999999996   6899999999999963    467999999999975     356899999999


Q ss_pred             CCCC-cCchhhhhhcCCchhhhhhhhcCceecCCCCCcccccCCCCCCCCCCCCCCCCC
Q psy15771        146 ELTP-LDSANEVFKAANWYEREIWDMFGVYFSNHPDLRRILTDYGFEGHPFRKDFPLSG  203 (265)
Q Consensus       146 e~~~-vPSIt~i~p~A~W~EREi~DMfGI~F~GHPDlRRILld~~f~ghPLRKDFpl~G  203 (265)
                      ++++ ||||+++||+|+|+|||+||||||.|+||||+||||++++|+||||||||||.|
T Consensus        96 ~~~p~ipSi~~i~p~A~w~ERE~~dmfGi~f~ghpd~rr~llpd~~~g~PlRKdfpl~~  154 (196)
T d2fug51          96 EEDPRLPTVTDLWGSANFLEREVYDLFGIVFEGHPDLRKILTPEDLEGHPLRKDYPLGE  154 (196)
T ss_dssp             SSCCCCCCCCC-----CCCHHHHHHHHHHSSCCCSSCSCCCCSSCSSSCSSSTTSCCCC
T ss_pred             cccceeeeeeccEecceeeecccceeeCeEECCCCCCccccCCCCCCCCCCCcCccCCC
Confidence            8776 999999999999999999999999999999999999999999999999999966