Psyllid ID: psy15832

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------1310------1320------1330------1340------1350------1360------1370------1380------1390------1400------1410------1420------1430------1440------1450------1460------1470------1480------1490------1500------1510------1520------1530------1540------1550------1560------1570------1580------1590------1600------1610------1620------1630------1640------1650------1660------1670------1680------1690------1700------1710------1720------1730------1740------1750------1760------1770------1780------1790------1800------1810------1820------1830------1840------1850------1860------1870------1880------1890------1900------1910------1920------1930------1940------1950------1960------1970------1980------1990------2000------2010------2020------2030------2040------2050------2060------2070------2080------2090------2100------2110------2120------2130------2140------2150------216

MPDGDKDKISFEDKSDKNSKDKPNSSDYNGKDQVVPSASNEIESVDDLDESMEINDIDASVETLSEITDKSSGIDTEKNLVKQIEPEKEEMVDNDKSGNLERTLLESRVEITESNKEDVECNDSMVQDVRCLKRTRIALSKVGGDAVSKVSSDTLDTVSKVSDENKALSPPEKAVSYPLESKKTPDKSAPSTAQPMSPQNDKKLETDAPKIPEPVSVLEEQSSKISDPSPVLQLSTGRKFKIGRLKEVSNTTNETAVPRKELADSRNIETSVESSKESPSTPSSGKEHVELANEKVIVGKEDQSKCDTNTDTNKVQEINGDEVRSDEHVFKVPRSVKVHRNLLSVDKFNKISGTIMSKPVLKESPSTPSSRKEHVELANEKVIVGKEDQSKCDTNTDANKVQESNGDEVRSDEHVFKVPRSVKLHRNLLSVDKFNKISGTIMSKPVLFVSSGSQDDSHSNGKVKYRPETDKNPKVNDIPTRNNTQSLFKAPYKHIPIPTVHKIRSNKNILNTKNEKVLANKKDTVPEDVSTNENGQNILNHTVNKASTKNTILPIVKTDNLMQQNRIIQSYNCNLNLVKPATVQKPPHTIVNSKKVNRILRRMGMEGFNKKFPFIDALPATPPQCRENGTGFKNYNGYNNSTIAKEEVEEMEETDCLVMEMEDDLQDVREPKDADSEVSEQLSSQTTCEDKVPVPDMTQPLADKEEVVEKSISLPRKEGEELNQMPVPIPNITDMTQPLVEKEGGVEKSPNRSQRKDEKLNFVSKIMENSLHKEDQIQNKGIVPEQSTSFPNVHVPDKESTSPNKMNNDLSPNKSDDTTSLTSTTSSGLKSPSNLLTSNETPCQSLQSPPSIFPKCIQNRLAKIRSTHNLPIYNITPMSNLAHNTRPGEKTNMNLGVHGLKSNEMSPPSLNKVDIQDAVKPVQASPTDISNQVSYNNNPEPTLVGNQTFSFYGQKRSSDITAPFEKESTVFRPPNNFSNTNTVSRPSNNVTSNSDNMVSRPPNNLNTSFVNNSPPKVNGPLENSVHQANATKPTEKIVLPTLSFYNTRNSPSYGANKRKCEDPEYVSSDESKKLRTELETSGTLKSTVNTPKDKDEPKSYTLIQRSIEHLQSEMSKPDVTPTNQIKTKTVTKKLNLLYYAMQPNDKNVFDRKIKAFVKELEDYPLDTLSKRIIALYDNKQLVDNPKAVTNIQTKVFCLIIQLNTTRPEFLPTFMKTLHETLVLHSETTLLSILYALTQLYVGLCRWRNDPASVMTFLYDTIYFHRKRSLNILDALITRWPTVYPVASRCVLVKVMSCILLNQQTSSQGSFLDDQNVFVKTKQQLRTKYRYQEQFTLAGLLAELMNMLKSKHSCCSNPWQRNPRSNSHHQGAESSSFSGCVQRALVLLAKHWRPAPDLYSVVVERNLATLFRSSLDCGAISVAASCAELMGMIGKAMPRASSLLCIVSLLDILEVGLQHAACRSPSPLRTSIGRALTCLTAHNTERCVAILTSVPWTEAEVNDLVKDVAAKVIAVKNLDWWKEMLEREGSLPKQVTEYFKDKSVCHDLKVKHVQGQVSYFKDEYQGHELKVKFKVREWIKTDQSIPMCTGRAGWKCMSLREPKYKSSMFPVDLEAMDTILSVDEEKKTVKVEPYVTMGQLTRYLIPRGWTIPVVVELDDVTVGLLTKILQYIWRQAGRVAHFDPAQPEWKSQQHAIVHLCSLLQIPTTLNVAQLQELFMNEMGQEGDPPDKKGGTRDTAGKERETIVYQENHVYDRYRVLVQCKRSPDNPTNFISNQKCGMLINEIVTNKTDVVEIRRLNRSKILVSSCIPGVMWMKMFDDNLLLESIDARQFRVKSVQRLNRKVVSPTREIECAPFIQRVVQCYQCAKFGHTSKFCHNPVLCNVCYLPKLDQHTCRAPENVRCVNCKGDHKPTEQRCPEMSRQKKIKEMMSMRGLVFQEAAQMVPSIRSSYTVRTQNSFAVLESSENTRNDDFPALGSKNQVNAVEPIEKFVPPPLPYVSANNVTKKFSKEMNDMNKFTKRRGYSNDVKVSNDAKKLKPSQSTLSLRREEDTAMIVPVLLLINEFNNFHPDTRNETARGVHNQEKSDLNINNASNAHSSYAFQVESSYNQFDNLGYEMGDNDPMIDNNNGTMLVENNTSDNAIDNMYRFGGVLSPNL

cccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccHHHcccccccccccccccccHHHHHHHHccccccccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccHHccccccccccccccccccccccccccEEEccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccHHHcccccccccccccccHHHHHHccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccEEccccccccccccccccccccHHHHccccccccccccccccccHHccccccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHccccccccccccccccccEEEEEEEEEcccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHEEEccccccccHHHEEHHEEEEEccccHHHHHHHHHccccccccccEEEEEEEHHEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccEEEEHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccccccccccccccccccHHccccccccEEEEEccccccHHHHHHHHHHHHHHEEEEccHHHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccccccccccccEEEccccccccccccccccccccccEEEEccccEEEEEccccHHHHHHHHccccccccEEEcccccccHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHccccccccHHHHHHHHHHHHccccccccccccccccccccccEEEEEcccccccccEEEEEccccccccccccccccccEEEcccccccccHHHHHHHcccccccccccccEEEEEccccccccccccccEEEEEEcccccEEEEccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccHHHcccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccEEEEccccHHHcccHHHccccccccc

cccccHccEEEEcccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHcccEEccccccccccHHHcHHHHHHHHcccccccccccccEEEEcccccccccccccccccccccHcccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccEcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcEEEcccccccccccccccccEEEEcccccccHHHcccccccccccHHcccHHHccccccccccccccccccccccccccEEEEEccEEEccccccccccccccccccccccccccccHcccccccccEEEcccccEEEEEEccccccccccEEEEEEccccccccccEEEEcccccccccccccccccccEEEEcccccccccccEEEccccccccccccccccHcHHHHcHHHHcccccccEcccccHHHcccccccccEEEccccccccEEEEEcccccccccccccccccccccccccccHHcHHHccccccccccccccccccccccccccccccccccccccccccccHHHccccccEEEcccccHHHccccccccccHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccEEEcccccccccccccccccccccccccccEEEcccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccHHcHHEHEEEccccccccccHHHHHHHHEEEEEEEcccccHcHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccccccccccccccEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcccccHHEHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcHHHHcccccccccccHHHHHHHHHHccccHEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccccEccccccEEEEEEccccccccccEcccccHHHEEEEccccEEEEEEccccHHHHHHHHccccccccEEcccccccHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccccccccccccccccEEEEEcccccccEEEEEEEEccccccccEEccccccEEEEEEccccEEEEEEEEccccccccccccccEEEEEEccccccccccEEEEEEEEEEEEccccEEEccEEEEEccccccccHHHHHHHccccHHHccccccHcccccccccccccccccccEEEcccccccccccccHHHHHHHHHHHHHHHccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEcccccccHHcccccccccEEcccHHHcccccccccHcccccccccccEEEEEEcccccccccHHHHEcccccccccccccccccccccccEEEEEcccccccccccccccccccEcccccEEEEEccccccHHHHHHHccccccccc

mpdgdkdkisfedksdknskdkpnssdyngkdqvvpsasneiesvddldesmeindidaSVETLSeitdkssgidteKNLVKqiepekeemvdndksgnleRTLLESRVEItesnkedvecndsmvQDVRCLKRTRIALSKvggdavskvssdtldtvskvsdenkalsppekavsypleskktpdksapstaqpmspqndkkletdapkipepvsvleeqsskisdpspvlqlstgrkfkigrlkevsnttnetavprkeladsrnietsvesskespstpssgkeHVELANEKVIvgkedqskcdtntdtnkvqeingdevrsdehvfkvprsVKVHRNLLSVdkfnkisgtimskpvlkespstpssrkEHVELANEKVivgkedqskcdtntdankvqesngdevrsdehvfkvprsvKLHRNLLSvdkfnkisgtimskpvlfvssgsqddshsngkvkyrpetdknpkvndiptrnntqslfkapykhipiptvhkirsnknilntknekvlankkdtvpedvstnengqNILNHTVnkastkntilpivktdnlmQQNRIIQSYNcnlnlvkpatvqkpphtivnSKKVNRILRRMgmegfnkkfpfidalpatppqcrengtgfknyngynnstiAKEEVEEMEETDCLVMEMEDdlqdvrepkdadsevseqlssqttcedkvpvpdmtqpladkEEVVEKSISlprkegeelnqmpvpipnitdmtqplvekeggvekspnrsqrkdeKLNFVSKIMENslhkedqiqnkgivpeqstsfpnvhvpdkestspnkmnndlspnksddttsltsttssglkspsnlltsnetpcqslqsppsifpkCIQNRLAKIrsthnlpiynitpmsnlahntrpgektnmnlgvhglksnemsppslnkvdiqdavkpvqasptdisnqvsynnnpeptlvgnqtfsfygqkrssditapfekestvfrppnnfsntntvsrpsnnvtsnsdnmvsrppnnlntsfvnnsppkvngplensvhqanatkptekivlptlsfyntrnspsygankrkcedpeyvssdeskKLRTELetsgtlkstvntpkdkdepksYTLIQRSIEHLqsemskpdvtptnqiktkTVTKKLNLLYYAmqpndknvFDRKIKAFVKELEDYPLDTLSKRIIALYdnkqlvdnpkavtnIQTKVFCLIIQlnttrpeflPTFMKTLHETLVLHSETTLLSILYALTQLYVGLcrwrndpasvMTFLYDTIYFHRKRSLNILDALItrwptvypvasRCVLVKVMSCILLnqqtssqgsflddqNVFVKTKQQLRTKYRYQEQFTLAGLLAELMNMLKskhsccsnpwqrnprsnshhqgaesssfsGCVQRALVLLAKhwrpapdlySVVVERNLATLFRSSLDCGAISVAASCAELMGMIGKAMPRASSLLCIVSLLDILEVGLqhaacrspsplrtsIGRALTCLTAHNTERCVAILtsvpwteaEVNDLVKDVAAKVIAVKNLDWWKEMLEregslpkqvteyfkdksvchdlkvkhvqgqvsyfkdeyqghelKVKFKVREwiktdqsipmctgragwkcmslrepkykssmfpvdLEAMDTILSvdeekktvkvepyvtmgqltryliprgwtipvvveldDVTVGLLTKILQYIWRQagrvahfdpaqpewksQQHAIVHLCSLLQIPTTLNVAQLQELFMNemgqegdppdkkggtrdtagkereTIVYQENHVYDRYRVLVQckrspdnptnfisnqkcGMLINEivtnktdvVEIRRLNRSKilvsscipgvmwmkMFDDNLLLESIDARQFRVKSVQRlnrkvvsptreiecapFIQRVVQCYQcakfghtskfchnpvlcnvcylpkldqhtcrapenvrcvnckgdhkpteqrcpeMSRQKKIKEMMSMRGLVFQEAAQMVPSIRSSYTVRTQNSFAVLEssentrnddfpalgsknqvnavepiekfvppplpyvsannvTKKFSKEMNDMNkftkrrgysndvkvsndakklkpsqstlslrreedtAMIVPVLLLINEfnnfhpdtrnetargvhnqeksdlninnasnahssyAFQVESSynqfdnlgyemgdndpmidnnngtmlvenntsdnaidnmyrfggvlspnl

mpdgdkdkisfedksdknskdkpnssdyngkdqvvpsasNEIESVDDLDESMEINDIDASVETlseitdkssgidteknlvkqiepekeemvdndksgnlertLLESRVeitesnkedvecndsmvqDVRCLKRTRIalskvggdavskvssdtldtvskvsdenkalsppekavsypleskktpdksapstaqpmspqndKKLETDAPKIPEPVSVLeeqsskisdpspvlqlstgrkfkigrlkevsnttnetavprkeladsrnietsvesskespstpssgkehVELANEKVivgkedqskcdtntdtnkvqeingdevrsdehvfkvprsvkvhrnllsvdkfnkisgtimskpvlkespstpssrkehvELANEkvivgkedqskcdtntdankvqesngdevrsdehvfkvprsvklhrnllsvdkfnkisgtimSKPVLFVSsgsqddshsngkvkyrpetdknpkvndiptrnntqslfkapykhipiptvhkirsnknilntknekvlankkdtvpedvstnengqnilnhtvnkastkntILPIVKTDNLMQQNRIIQSYNCNLNLVKpatvqkpphtivnskkvNRILRRMGMEGFNKKFPFIDALPATPPQCREngtgfknyngynNSTIAKEEVEEMEETDCLVMEMEDDLQDVREPKDADSevseqlssqttcedkvpvpdmtqpladkeevVEKSislprkegeelnqmpvpipniTDMTQPLVEKeggvekspnrsqrkdekLNFVSKIMENSLHKEDQIQNKGIVPEQSTSFPNVHVpdkestspnkmnndlspnksddttsltsttssglkspsnlLTSNETPCQSLQSPPSIFPKCIQNRLAKIRSTHNLPIYNITPMSNLAHNTRPGEKTNMNLGVHGLKSNEMSPPSLNKVDIQDAVKPVQASPTDISNQVSYNNNPEPTLVGNQTFSFYGQKRSSDITAPFEkestvfrppnnfsntntvsrpsnnvtsnsdnmVSRPPNNLNTSFVNNSPPKVNGPLENSVHQANATKPTEKIVLPTLSfyntrnspsygankrkcedpeyvssdeskklrteletsgtlkstvntpkdkdepkSYTLIQRSIEhlqsemskpdvtptnqiktktvTKKLNLLYYamqpndknvFDRKIKAFVKELEDYPLDTLSKRIIALYDNKQLVDNPKAVTNIQTKVFCLIIQLNTTRPEFLPTFMKTLHETLVLHSETTLLSILYALTQLYVGLCRWRNDPASVMTFLYDTIYFHRKRSLNILDALITRWPTVYPVASRCVLVKVMSCILLNQQTssqgsflddqNVFVKTKQQLRTKYRYQEQFTLAGLLAELMNMLKSKHSCCSNPWQRNPRSNSHHQGAESSSFSGCVQRALVLLAKHWRPAPDLYSVVVERNLATLFRSSLDCGAISVAASCAELMGMIGKAMPRASSLLCIVSLLDILEVGLQHAacrspsplrTSIGRALTCLTAHNTERCVAILTSVPWTEAEVNDLVKDVAAKVIAVKNLDWWKEMLEregslpkqvtEYFKDKSVCHDLKVKHVqgqvsyfkdeyqgheLKVKFkvrewiktdqsipmctgragwKCMSLREPKYKSSMFPVDLEAMDTIlsvdeekktvkvepyvtmgqltryliprgwTIPVVVELDDVTVGLLTKILQYIWRQAGRVAHFDPAQPEWKSQQHAIVHLCSLLQIPTTLNVAQLQELFMNemgqegdppdkkggtrdtagkeretivyqenhvydRYRVLVQCKRspdnptnfisnqkcgMLINEIvtnktdvveirrlnrskilvsscipgvMWMKMFDDNLLLESIDARQFRVKSvqrlnrkvvsptreiecapfIQRVVQCYQCAKFGHTSKFCHNPVLCNVCYLPKLDQHTCRAPENVRCVNckgdhkpteqrcpemsRQKKIKEMMSMRGLVFQEAAQMVPSIRSSYTVRTQNSFAVLESSentrnddfpalgsKNQVNAVEPIEKfvppplpyvsaNNVTKKFSKEMNDMnkftkrrgysndvkvsndakklkpsqstlslrreedTAMIVPVLLLINEFNNFHPDTRNETARGVHNQEKSDLNINNASNAHSSYAFQVESSYNQFDNLGYEMGDNDPMIDNNNGTMLVENNTSDNAIDNmyrfggvlspnl

MPDGDKDKISFEdksdknskdkpnssdYNGKDQVVPSASNEIESVDDLDESMEINDIDASVETLSEITDKSSGIDTEKNLVKQIEPEKEEMVDNDKSGNLERTLLESRVEITESNKEDVECNDSMVQDVRCLKRTRIALSKVGGDAVSKVSSDTLDTVSKVSDENKALSPPEKAVSYPLESKKTPDKSAPSTAQPMSPQNDKKLETDAPKIPEPVSVLEEQSSKISDPSPVLQLSTGRKFKIGRLKEVSNTTNETAVPRKELADSRNIetsvesskespstpssgkeHVELANEKVIVGKEDQSKCDTNTDTNKVQEINGDEVRSDEHVFKVPRSVKVHRNLLSVDKFNKISGTIMSKPVLKESPSTPSSRKEHVELANEKVIVGKEDQSKCDTNTDANKVQESNGDEVRSDEHVFKVPRSVKLHRNLLSVDKFNKISGTIMSKPVLFVSSGSQDDSHSNGKVKYRPETDKNPKVNDIPTRNNTQSLFKAPYKHIPIPTVHKIRSNKNILNTKNEKVLANKKDTVPEDVSTNENGQNILNHTVNKASTKNTILPIVKTDNLMQQNRIIQSYNCNLNLVKPATVQKPPHTIVNSKKVNRILRRMGMEGFNKKFPFIDALPATPPQCRENGTGFKNYNGYNNSTIAKEEVEEMEETDCLVMEMEDDLQDVREPKDADSEVSEQLSSQTTCEDKVPVPDMTQPLADKEEVVEKSISLPRKEGEELNQMPVPIPNITDMTQPLVEKEGGVEKSPNRSQRKDEKLNFVSKIMENSLHKEDQIQNKGIVPEQSTSFPNVHVPDKESTSPNKMNNDLSPNKsddttsltsttssGLKSPSNLLTSNETPCQSLQSPPSIFPKCIQNRLAKIRSTHNLPIYNITPMSNLAHNTRPGEKTNMNLGVHGLKSNEMSPPSLNKVDIQDAVKPVQASPTDISNQVSYNNNPEPTLVGNQTFSFYGQKRSSDITAPFEKESTVFRPPNNFSNTNTVSRPSNNVTSNSDNMVSRPPNNLNTSFVNNSPPKVNGPLENSVHQANATKPTEKIVLPTLSFYNTRNSPSYGANKRKCEDPEYVSSDESKKLRTELETSGTLKSTVNTPKDKDEPKSYTLIQRSIEHLQSEMSKPDVTPTNQIktktvtkklnllYYAMQPNDKNVFDRKIKAFVKELEDYPLDTLSKRIIALYDNKQLVDNPKAVTNIQTKVFCLIIQLNTTRPEFLPTFMKTLHETLVLHSETTLLSILYALTQLYVGLCRWRNDPASVMTFLYDTIYFHRKRSLNILDALITRWPTVYPVASRCVLVKVMSCILLNQQTSSQGSFLDDQNVFVKTKQQLRTKYRYQEQFTLAGLLAELMNMLKSKHSCCSNPWQRNPRSNSHHQGAESSSFSGCVQRALVLLAKHWRPAPDLYSVVVERNLATLFRSSLDCGAISVAASCAELMGMIGKAMPRASSLLCIVSLLDILEVGLQHAACRSPSPLRTSIGRALTCLTAHNTERCVAILTSVPWTEAEVNDLvkdvaakviavkNLDWWKEMLEREGSLPKQVTEYFKDKSVCHDLKVKHVQGQVSYFKDEYQGHELKVKFKVREWIKTDQSIPMCTGRAGWKCMSLREPKYKSSMFPVDLEAMDTILSVDEEKKTVKVEPYVTMGQLTRYLIPRGWTIPVVVELDDVTVGLLTKILQYIWRQAGRVAHFDPAQPEWKSQQHAIVHLCSLLQIPTTLNVAQLQELFMNEMGQEGDPPDKKGGTRDTAGKERETIVYQENHVYDRYRVLVQCKRSPDNPTNFISNQKCGMLINEIVTNKTDVVEIRRLNRSKILVSSCIPGVMWMKMFDDNLLLESIDARQFRVKSVQRLNRKVVSPTREIECAPFIQRVVQCYQCAKFGHTSKFCHNPVLCNVCYLPKLDQHTCRAPENVRCVNCKGDHKPTEQRCPEMSRQKKIKEMMSMRGLVFQEAAQMVPSIRSSYTVRTQNSFAVLESSENTRNDDFPALGSKNQVNAVEPIEKFVPPPLPYVSANNVTKKFSKEMNDMNKFTKRRGYSNDVKVSNDAKKLKPSQSTLSLRREEDTAMIVPVLLLINEFNNFHPDTRNETARGVHNQEKSDLNINNASNAHSSYAFQVESSYNQFDNLGYEMGDNDPMIDNNNGTMLVENNTSDNAIDNMYRFGGVLSPNL

****************************************************************************************************************************MVQDVRCLKRTRIALSKV******************************************************************************************************************************************************************************************VFKVPRSVKVHRNLLSVDKFNKIS***************************************************************FKVPRSVKLHRNLLSVDKFNKISGTIMSKPVLFV**************************************FKAPYKHIPIPTVHKIRS***I*****************************LNHTVNKASTKNTILPIVKTDNLMQQNRIIQSYNCNLNLVKPATVQKPPHTIVNSKKVNRILRRMGMEGFNKKFPFIDALPATP**C***GTGFKNYNGY*********************************************************************************************************************************************************************************************************************IFPKCIQNRLAKIRSTHNLPIYNITP***************************************************************************************************************************************************************IVLPTLSFY*********************************************************************************TKTVTKKLNLLYYAMQPNDKNVFDRKIKAFVKELEDYPLDTLSKRIIALYDNKQLVDNPKAVTNIQTKVFCLIIQLNTTRPEFLPTFMKTLHETLVLHSETTLLSILYALTQLYVGLCRWRNDPASVMTFLYDTIYFHRKRSLNILDALITRWPTVYPVASRCVLVKVMSCILLNQQTSSQGSFLDDQNVFVKTKQQLRTKYRYQEQFTLAGLLAELMNMLKSKHSCC**********************SGCVQRALVLLAKHWRPAPDLYSVVVERNLATLFRSSLDCGAISVAASCAELMGMIGKAMPRASSLLCIVSLLDILEVGLQHAACRSPSPLRTSIGRALTCLTAHNTERCVAILTSVPWTEAEVNDLVKDVAAKVIAVKNLDWWKEMLEREGSLPKQVTEYFKDKSVCHDLKVKHVQGQVSYFKDEYQGHELKVKFKVREWIKTDQSIPMCTGRAGWKCMSLREPKYKSSMFPVDLEAMDTILSVDEEKKTVKVEPYVTMGQLTRYLIPRGWTIPVVVELDDVTVGLLTKILQYIWRQAGRVAHFDPAQPEWKSQQHAIVHLCSLLQIPTTLNVAQLQELFM*************************TIVYQENHVYDRYRVLVQCKRSPDNPTNFISNQKCGMLINEIVTNKTDVVEIRRLNRSKILVSSCIPGVMWMKMFDDNLLLESIDARQFRVKSVQRLNRKVVSPTREIECAPFIQRVVQCYQCAKFGHTSKFCHNPVLCNVCYLPKLDQHTCRAPENVRCVNCK****************************VF******************************************************************************************************************TAMIVPVLLLINEFNNFH**************************************YNQFDNLGY****************************NMYRF********

******************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************L*T****************************************************************************************VTKKLNLLYYAMQPNDKNVFDRKIKAFVKELEDYPLDTLSKRIIALYDNKQLVDNPKAVTNIQTKVFCLIIQLNTTRPEFLPTFMKTLHETLVLHSETTLLSILYALTQLYVGLCRWRNDPASVMTFLYDTIYFHRKRSLNILDALITRWPTVYPVASRCVLVKVMSCILLNQQTS***SFLDDQNVFVKTKQQLRTKYRYQEQFTLAGLLAELMNMLKSKHSCC***********************GCVQRALVLLAKHWRPAPDLYSVVVERNLATLFRSSLDCGAISVAASCAELMGMIGKAMPRASSLLCIVSLLDILEVGLQHAACRSPSPLRTSIGRALTCLTAHNTERCVAILTSVPWTEAEVNDLVKDVAAKVIAVKNLDWWKEMLEREGSLPKQVTEYFKDKSVCHDLKVKHVQG*****************FKVREW**TDQS*PMCTGRAGWKCMSLREPKYKSSMFPVDLEAMDTILSVDEEKKTVKVEPYVTMGQLTRYLIPRGWTIPVVVELDDVTVGLLTKILQYIWRQAGRVAHFDPAQPEWKSQQHAIVHLCSLLQIPTTLNVAQLQELF*****************************YQENHVYDRYRVLVQCKRSPD*****ISNQKCGMLINEIVTNKTDVVEIRRLNRSKILVSSCIPGVMWMKMFDDNLLLESIDARQFRVKSVQRLNRKVVSPTREIECAPFIQRVVQCYQCAKFGHTSKFCHNPVLCNVCYLPKLDQHT***PENVRCVNCKGDHKPTEQRCPEMSRQKKIK********************************************************************************************************************************VPVLLLINEFNNFHPDTRNET**********************SYAFQVESSYNQFDNLGYEMGDNDPMIDNNNGTMLVENNTSDNAIDNMYRFGGVLSPN*

MPDGDKDKISF*********************QVVPSASNEIESVDDLDESMEINDIDASVETLSEITDKSSGIDTEKNLVKQIEPEKEEMVDNDKSGNLERTLLESRVEITESNKEDVECNDSMVQDVRCLKRTRIALS**************LDTVS*******************************************KLETDAPKIPEPV****************LQLSTGRKFKIGRLKEVSN**************************************VELANEKVIVGKEDQSKCDTNTDTNKVQEINGDEVRSDEHVFKVPRSVKVHRNLLSVDKFNKISGTIMSKP***************VELANEKVIVGKED************************EHVFKVPRSVKLHRNLLSVDKFNKISGTIMSKPVLFVS***************RPETDKNPKVNDIPTRNNTQSLFKAPYKHIPIPTVHKIRSNKNILNTKNEKVLANKKDTVPEDVSTNENGQNILNHTVNKASTKNTILPIVKTDNLMQQNRIIQSYNCNLNLVKPATVQKPPHTIVNSKKVNRILRRMGMEGFNKKFPFIDALPATPPQCRENGTGFKNYNGYNNSTIAKEEVEEMEETDCLVMEMEDDL************************DKVPVPDMTQPLADKEEVVEKSISLPRKEGEELNQMPVPIPNITDMTQPLV*****************EKLNFVSKIMENSLHKEDQIQNKGIVPEQSTSFPN*************MNNDLS*********************SNLLTSN*********PPSIFPKCIQNRLAKIRSTHNLPIYNITPMSNLAHNTRPGEKTNMNLGVHGLKSNEMSPPSLNKVDIQDAVKPVQASPTDISNQVSYNNNPEPTLVGNQTFSFYGQKRSSDITAPFEKESTVFRPPNNFSNTNTVSRPSNNVTSNSDNMVSRPPNNLNTSFVNNSPPKVNGPLENSVHQANATKPTEKIVLPTLSFYNTRNSP**************************LETSGTLKSTVNTPKDKDEPKSYTLIQRSIEHLQS**********NQIKTKTVTKKLNLLYYAMQPNDKNVFDRKIKAFVKELEDYPLDTLSKRIIALYDNKQLVDNPKAVTNIQTKVFCLIIQLNTTRPEFLPTFMKTLHETLVLHSETTLLSILYALTQLYVGLCRWRNDPASVMTFLYDTIYFHRKRSLNILDALITRWPTVYPVASRCVLVKVMSCILLNQQTSSQGSFLDDQNVFVKTKQQLRTKYRYQEQFTLAGLLAELMNMLKSKHSCCSNP*******************SGCVQRALVLLAKHWRPAPDLYSVVVERNLATLFRSSLDCGAISVAASCAELMGMIGKAMPRASSLLCIVSLLDILEVGLQHAACRSPSPLRTSIGRALTCLTAHNTERCVAILTSVPWTEAEVNDLVKDVAAKVIAVKNLDWWKEMLEREGSLPKQVTEYFKDKSVCHDLKVKHVQGQVSYFKDEYQGHELKVKFKVREWIKTDQSIPMCTGRAGWKCMSLREPKYKSSMFPVDLEAMDTILSVDEEKKTVKVEPYVTMGQLTRYLIPRGWTIPVVVELDDVTVGLLTKILQYIWRQAGRVAHFDPAQPEWKSQQHAIVHLCSLLQIPTTLNVAQLQELFMNEMGQ***************GKERETIVYQENHVYDRYRVLVQCKRSPDNPTNFISNQKCGMLINEIVTNKTDVVEIRRLNRSKILVSSCIPGVMWMKMFDDNLLLESIDARQFRVKSVQRLNRKVVSPTREIECAPFIQRVVQCYQCAKFGHTSKFCHNPVLCNVCYLPKLDQHTCRAPENVRCVNCKGDHKPTEQRCPEMSRQKKIKEMMSMRGLVFQEAAQMVPSIRSSYTVRTQNSFAVLESSENTRNDDFPALGSKNQVNAVEPIEKFVPPPLPYVSANNVTKKFSKEMNDMNKFTKRRGYSNDVKVSNDAKKLKPSQSTLSLRREEDTAMIVPVLLLINEFNNFHPDTRNETARGVHNQEKSDLNINNASNAHSSYAFQVESSYNQFDNLGYEMGDNDPMIDNNNGTMLVENNTSDNAIDNMYRFGGVLSPNL

*******K*****************************************************************************************************************NDSMVQDVRCLKRT**************V******************************************************************************************************************************************************************************************************************************EHVELANEKVI*************************************SVKLHRNLLSVDKFNKISGTIMSKPVLFVSSG*****************************NNTQSLFKAPYKHIPIPTVHKIRS******************************************TKNTILPIVKT**LMQQNRIIQ*YN*****************************************************************************************************************************************************************************************************************************************************************************************************STHNLPIYN*********************************************************************************************STVFRPPNNF******************************************************K*TEKIVLPTLSFYNT********************************TSGTLKST******************************************VTKKLNLLYYAMQPNDKNVFDRKIKAFVKELEDYPLDTLSKRIIALYDNKQLVDNPKAVTNIQTKVFCLIIQLNTTRPEFLPTFMKTLHETLVLHSETTLLSILYALTQLYVGLCRWRNDPASVMTFLYDTIYFHRKRSLNILDALITRWPTVYPVASRCVLVKVMSCILLNQQTSSQGSFLDDQNVFVKTKQQLRTKYRYQEQFTLAGLLAELMNMLKSKHSCC*N*******************FSGCVQRALVLLAKHWRPAPDLYSVVVERNLATLFRSSLDCGAISVAASCAELMGMIGKAMPRASSLLCIVSLLDILEVGLQHAACRSPSPLRTSIGRALTCLTAHNTERCVAILTSVPWTEAEVNDLVKDVAAKVIAVKNLDWWKEMLEREGSLPKQVTEYFKDKSVCHDLKVKHVQGQVSYFKDEYQGHELKVKFKVREWIKTDQSIPMCTGRAGWKCMSLREPKYKSSMFPVDLEAMDTILSVDEEKKTVKVEPYVTMGQLTRYLIPRGWTIPVVVELDDVTVGLLTKILQYIWRQAGRVAHFDPAQPEWKSQQHAIVHLCSLLQIPTTLNVAQLQELFMNEMGQEGD***KKGGT*****KERETIVYQENHVYDRYRVLVQCKRSPDNPTNFISNQKCGMLINEIVTNKTDVVEIRRLNRSKILVSSCIPGVMWMKMFDDNLLLESIDARQFRVKSVQRLNRKVVSPTREIECAPFIQRVVQCYQCAKFGHTSKFCHNPVLCNVCYLPKLDQHTCRAPENVRCVNCKGDHKPTEQRCPEMSRQKKIKEMMSMRGLVFQEAAQMVPSIRSSY******S**V**S******D**********VNA***I*KFVPPPLPYVSA****KKFSK**NDMNKFTKRRGY**DVKVSNDAKKL****************MIVPVLLLINEFNNFHPDTRNETARGVHNQEKSDLNINNASNAHSSYAFQVESSYNQFDNLGYEMGDNDPMIDNNNGTMLVENNTSDNAIDNMYRFGGVLSP**

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		2157	2.2.26 [Sep-21-2011]
Q60HC5		516	Delta(24)-sterol reductas	N/A	N/A	0.045	0.189	0.5	4e-18
Q15392		516	Delta(24)-sterol reductas	yes	N/A	0.045	0.189	0.5	4e-18
Q8VCH6		516	Delta(24)-sterol reductas	yes	N/A	0.045	0.189	0.490	2e-17
Q5BQE6		516	Delta(24)-sterol reductas	yes	N/A	0.045	0.189	0.490	2e-17
O17397		525	Diminuto-like protein OS=	yes	N/A	0.047	0.194	0.416	1e-15
P93472		567	Delta(24)-sterol reductas	N/A	N/A	0.052	0.199	0.370	2e-11
Q39085		561	Delta(24)-sterol reductas	yes	N/A	0.049	0.188	0.376	3e-11
P21330		568	Nucleic-acid-binding prot	yes	N/A	0.040	0.153	0.304	1e-05
P21331		574	Nucleic-acid-binding prot	N/A	N/A	0.035	0.134	0.329	2e-05

>sp\|Q60HC5\|DHC24_MACFA Delta(24)-sterol reductase OS=Macaca fascicularis GN=DHCR24 PE=2 SV=2	Back alignment and function desciption

 Score = 95.9 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 51/102 (50%), Positives = 66/102 (64%), Gaps = 4/102 (3%)

Query: 1566 HELKVK---FKVREWIKTDQSIPMCTGRAGWKCMSLREPKYKSSMFPVDLEAMDTILSVD 1622
            HE +V+    +VREW +      MCTGR GW  +SLR  KYK +   + +  MD IL VD
Sbjct: 67   HEQRVRDIQKQVREWKEQGSKTFMCTGRPGWLTVSLRVGKYKKTHKNIMINLMD-ILEVD 125

Query: 1623 EEKKTVKVEPYVTMGQLTRYLIPRGWTIPVVVELDDVTVGLL 1664
             +K+ V+VEP VTMGQ+T  L   GWT+PV+ ELDD+TVG L
Sbjct: 126  TKKQIVRVEPLVTMGQVTALLTSIGWTLPVLPELDDLTVGGL 167

Catalyzes the reduction of the delta-24 double bond of sterol intermediates.
Macaca fascicularis (taxid: 9541)
EC: 1EC: .EC: 3EC: .EC: 1EC: .EC: 7EC: 2

>sp\|Q15392\|DHC24_HUMAN Delta(24)-sterol reductase OS=Homo sapiens GN=DHCR24 PE=1 SV=2	Back alignment and function description

>sp\|Q8VCH6\|DHC24_MOUSE Delta(24)-sterol reductase OS=Mus musculus GN=Dhcr24 PE=2 SV=1	Back alignment and function description

>sp\|Q5BQE6\|DHC24_RAT Delta(24)-sterol reductase OS=Rattus norvegicus GN=Dhcr24 PE=2 SV=2	Back alignment and function description

>sp\|O17397\|DIML_CAEEL Diminuto-like protein OS=Caenorhabditis elegans GN=F52H2.6 PE=3 SV=1	Back alignment and function description

>sp\|P93472\|DIM_PEA Delta(24)-sterol reductase OS=Pisum sativum GN=DIM PE=1 SV=1	Back alignment and function description

>sp\|Q39085\|DIM_ARATH Delta(24)-sterol reductase OS=Arabidopsis thaliana GN=DIM PE=1 SV=2	Back alignment and function description

>sp\|P21330\|GAGJ_DROME Nucleic-acid-binding protein from mobile element jockey OS=Drosophila melanogaster GN=gag PE=4 SV=1	Back alignment and function description

>sp\|P21331\|GAGJ_DROFU Nucleic-acid-binding protein from mobile element jockey OS=Drosophila funebris GN=gag PE=4 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		2157
251825191		521	24-dehydrocholesterol reductase [Daphnia	0.045	0.188	0.519	2e-21
321472723		505	hypothetical protein DAPPUDRAFT_301660 [	0.045	0.194	0.519	2e-21
189233852		505	PREDICTED: similar to 24-dehydrocholeste	0.047	0.201	0.504	6e-21
449508672		524	PREDICTED: delta(24)-sterol reductase-li	0.046	0.192	0.483	1e-19
387015436		516	Delta(24)-sterol reductase-like [Crotalu	0.046	0.195	0.475	1e-19
327270900		516	PREDICTED: delta(24)-sterol reductase-li	0.044	0.184	0.541	1e-19
345479476		498	PREDICTED: delta(24)-sterol reductase-li	0.043	0.188	0.557	1e-19
71896815		516	24-dehydrocholesterol reductase [Gallus	0.046	0.195	0.475	5e-19
326925444		516	PREDICTED: delta(24)-sterol reductase-li	0.046	0.195	0.483	8e-19
170028705		504	24-dehydrocholesterol reductase [Culex q	0.047	0.202	0.429	1e-17

>gi\|251825191\|gb\|ACT20729.1\| 24-dehydrocholesterol reductase [Daphnia pulex] gi\|321472718\|gb\|EFX83687.1\| hypothetical protein DAPPUDRAFT_301658 [Daphnia pulex]	Back alignment and taxonomy information

 Score =  112 bits (280), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 53/102 (51%), Positives = 75/102 (73%), Gaps = 4/102 (3%)

Query: 1566 HELKVKF---KVREWIKTDQSIPMCTGRAGWKCMSLREPKYKSSMFPVDLEAMDTILSVD 1622
            H+ +VKF   +VREW +  ++ PMCT R GW+ +S R+PKYK ++F V +  MD +L +D
Sbjct: 71   HDERVKFVQKQVREWNRQGRNTPMCTARPGWQTISFRQPKYKKTLFNVKVNLMD-VLEID 129

Query: 1623 EEKKTVKVEPYVTMGQLTRYLIPRGWTIPVVVELDDVTVGLL 1664
             E+KTV+VEP V+MGQL+  L P GWTIP++ E+DD+TVG L
Sbjct: 130  TERKTVRVEPLVSMGQLSATLNPLGWTIPILPEMDDLTVGGL 171

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi\|321472723\|gb\|EFX83692.1\| hypothetical protein DAPPUDRAFT_301660 [Daphnia pulex]	Back alignment and taxonomy information

>gi\|189233852\|ref\|XP_001810773.1\| PREDICTED: similar to 24-dehydrocholesterol reductase [Tribolium castaneum]	Back alignment and taxonomy information

>gi\|449508672\|ref\|XP_002198195.2\| PREDICTED: delta(24)-sterol reductase-like [Taeniopygia guttata]	Back alignment and taxonomy information

>gi\|387015436\|gb\|AFJ49837.1\| Delta(24)-sterol reductase-like [Crotalus adamanteus]	Back alignment and taxonomy information

>gi\|327270900\|ref\|XP_003220226.1\| PREDICTED: delta(24)-sterol reductase-like [Anolis carolinensis]	Back alignment and taxonomy information

>gi\|345479476\|ref\|XP_001607022.2\| PREDICTED: delta(24)-sterol reductase-like [Nasonia vitripennis]	Back alignment and taxonomy information

>gi\|71896815\|ref\|NP_001026459.1\| 24-dehydrocholesterol reductase [Gallus gallus] gi\|53136172\|emb\|CAG32491.1\| hypothetical protein RCJMB04_27e12 [Gallus gallus]	Back alignment and taxonomy information

>gi\|326925444\|ref\|XP_003208925.1\| PREDICTED: delta(24)-sterol reductase-like [Meleagris gallopavo]	Back alignment and taxonomy information

>gi\|170028705\|ref\|XP_001842235.1\| 24-dehydrocholesterol reductase [Culex quinquefasciatus] gi\|167877920\|gb\|EDS41303.1\| 24-dehydrocholesterol reductase [Culex quinquefasciatus]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		2157
UNIPROTKB\|B7Z817		475	DHCR24 "cDNA FLJ53870, highly	0.050	0.231	0.482	1.7e-17
UNIPROTKB\|Q5ZIF2		516	DHCR24 "Uncharacterized protei	0.042	0.178	0.548	4e-16
UNIPROTKB\|A6QR14		516	DHCR24 "Uncharacterized protei	0.044	0.186	0.5	3.4e-15
UNIPROTKB\|Q15392		516	DHCR24 "Delta(24)-sterol reduc	0.044	0.186	0.5	3.4e-15
UNIPROTKB\|I3LM80		516	DHCR24 "Uncharacterized protei	0.044	0.186	0.5	3.4e-15
UNIPROTKB\|Q60HC5		516	DHCR24 "Delta(24)-sterol reduc	0.044	0.186	0.5	3.4e-15
UNIPROTKB\|F1PXA2		516	DHCR24 "Uncharacterized protei	0.042	0.178	0.505	5.6e-15
MGI\|MGI:1922004		516	Dhcr24 "24-dehydrocholesterol	0.044	0.186	0.49	1.5e-14
RGD\|1306529		516	Dhcr24 "24-dehydrocholesterol	0.044	0.186	0.49	2e-14
ZFIN\|ZDB-GENE-041212-73		516	dhcr24 "24-dehydrocholesterol	0.042	0.178	0.494	4.2e-14

UNIPROTKB\|B7Z817 DHCR24 "cDNA FLJ53870, highly similar to 24-dehydrocholesterol reductase (EC1.3.1.-)" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

 Score = 250 (93.1 bits), Expect = 1.7e-17, P = 1.7e-17
 Identities = 54/112 (48%), Positives = 72/112 (64%)

Query:  1552 VQGQVSYFKDEYQGHELKVKF-KVREWIKTDQSIPMCTGRAGWKCMSLREPKYKSSMFPV 1610
             VQG   Y + + +G E +V+  +VREW +      MCTGR GW  +SLR  KYK +   +
Sbjct:    14 VQGICGYLEGDEEGEEGEVRSTQVREWKEQGSKTFMCTGRPGWLTVSLRVGKYKKTHKNI 73

Query:  1611 DLEAMDTILSVDEEKKTVKVEPYVTMGQLTRYLIPRGWTIPVVVELDDVTVG 1662
              +  MD IL VD +K+ V+VEP VTMGQ+T  L   GWT+PV+ ELDD+TVG
Sbjct:    74 MINLMD-ILEVDTKKQIVRVEPLVTMGQVTALLTSIGWTLPVLPELDDLTVG 124

GO:0008762 "UDP-N-acetylmuramate dehydrogenase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

UNIPROTKB\|Q5ZIF2 DHCR24 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|A6QR14 DHCR24 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|Q15392 DHCR24 "Delta(24)-sterol reductase" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|I3LM80 DHCR24 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|Q60HC5 DHCR24 "Delta(24)-sterol reductase" [Macaca fascicularis (taxid:9541)]	Back alignment and assigned GO terms

UNIPROTKB\|F1PXA2 DHCR24 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

MGI\|MGI:1922004 Dhcr24 "24-dehydrocholesterol reductase" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

RGD\|1306529 Dhcr24 "24-dehydrocholesterol reductase" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-041212-73 dhcr24 "24-dehydrocholesterol reductase" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Alignment Graph	Length	Definition	E-value
Query		2157
pfam01565		139	pfam01565, FAD_binding_4, FAD binding domain	1e-08
COG0277		459	COG0277, GlcD, FAD/FMN-containing dehydrogenases [	3e-06
pfam07964		706	pfam07964, Red1, Rec10 / Red1	0.001

>gnl\|CDD\|216574 pfam01565, FAD_binding_4, FAD binding domain	Back alignment and domain information

 Score = 55.3 bits (134), Expect = 1e-08
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 1610 VDLEAMDTILSVDEEKKTVKVEPYVTMGQLTRYLIPRGWTIPVVVE-LDDVTVG 1662
            +DL  ++ IL +D E  T  VE  VT+G L R L  +G  + +        TVG
Sbjct: 48   LDLSRLNGILEIDPEDGTATVEAGVTLGDLVRALAAKGLLLGLEPGSGIPGTVG 101

This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. Length = 139

>gnl\|CDD\|223354 COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	Back alignment and domain information

>gnl\|CDD\|219668 pfam07964, Red1, Rec10 / Red1	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		2157
KOG1262\|consensus		543		99.97
PF01565		139	FAD_binding_4: FAD binding domain This is only a s	99.55
COG0277		459	GlcD FAD/FMN-containing dehydrogenases [Energy pro	99.49
TIGR01678		438	FAD_lactone_ox sugar 1,4-lactone oxidases. This mo	99.38
TIGR01679		419	bact_FAD_ox FAD-linked oxidoreductase. This model	99.37
PRK11282		352	glcE glycolate oxidase FAD binding subunit; Provis	99.32
TIGR01676		541	GLDHase galactonolactone dehydrogenase. This model	99.32
TIGR00387		413	glcD glycolate oxidase, subunit GlcD. This protein	99.31
PLN02805		555	D-lactate dehydrogenase [cytochrome]	99.29
PRK11230		499	glycolate oxidase subunit GlcD; Provisional	99.26
TIGR01677		557	pln_FAD_oxido plant-specific FAD-dependent oxidore	99.18
PLN02441		525	cytokinin dehydrogenase	99.16
PLN02465		573	L-galactono-1,4-lactone dehydrogenase	99.12
KOG4730\|consensus		518		98.97
PRK11183		564	D-lactate dehydrogenase; Provisional	98.94
PRK13905		298	murB UDP-N-acetylenolpyruvoylglucosamine reductase	97.85
KOG1232\|consensus		511		97.74
KOG1231\|consensus		505		97.56
TIGR00179		284	murB UDP-N-acetylenolpyruvoylglucosamine reductase	97.18
KOG1233\|consensus		613		97.16
PTZ00368		148	universal minicircle sequence binding protein (UMS	96.64
PRK13906		307	murB UDP-N-acetylenolpyruvoylglucosamine reductase	96.61
PRK12436		305	UDP-N-acetylenolpyruvoylglucosamine reductase; Pro	96.34
PTZ00368		148	universal minicircle sequence binding protein (UMS	95.95
PRK14652		302	UDP-N-acetylenolpyruvoylglucosamine reductase; Pro	95.72
COG5082		190	AIR1 Arginine methyltransferase-interacting protei	95.5
COG5082		190	AIR1 Arginine methyltransferase-interacting protei	95.28
PRK14649		295	UDP-N-acetylenolpyruvoylglucosamine reductase; Pro	95.14
PRK14653		297	UDP-N-acetylenolpyruvoylglucosamine reductase; Pro	93.7
KOG4400\|consensus		261		93.5
PF00098		18	zf-CCHC: Zinc knuckle; InterPro: IPR001878 Zinc fi	92.01
KOG4400\|consensus		261		91.59
PRK13903		363	murB UDP-N-acetylenolpyruvoylglucosamine reductase	81.08

>KOG1262\|consensus	Back alignment and domain information

Probab=99.97  E-value=6.4e-32  Score=303.03  Aligned_cols=144  Identities=34%  Similarity=0.576  Sum_probs=132.6

Q ss_pred             hhcchHhHHHHHHHHHhhhcccccccccchhhhhhhhHHhhccCCCCCeeecCCCCccccccCcccCCCcceeeccCCCc
Q psy15832       1538 FKDKSVCHDLKVKHVQGQVSYFKDEYQGHELKVKFKVREWIKTDQSIPMCTGRAGWKCMSLREPKYKSSMFPVDLEAMDT 1617 (2157)
Q Consensus      1538 fksa~e~HderVkkIqaQV~~~~~~yqf~e~k~pFRIreW~~hGrk~~MCTARPgWSTnSTRp~kYKrs~ivIDLSrLNR 1617 (2157)
                      -++++.+|+++|++||+||                  ++|++.|++.+||||||||+|+|+|+.+||+.|+.|++..|-.
T Consensus        52 ~ssa~~~H~qrVkkIqkql------------------kew~d~s~k~~lctaRp~Wltvs~r~~dykk~h~~v~id~l~d  113 (543)
T KOG1262|consen   52 LSSAPREHQQRVKKIQKQL------------------KEWLDDSEKKPLCTARPGWLTVSTRFFDYKKCHHQVPIDELHD  113 (543)
T ss_pred             hccCchHHHHHHHHHHHHH------------------HhhccccccCcccccCCCeEEEEEecchhhhhcccCCHHHHhH
Confidence            3566779999999999999                  8999999999999999999999999999999999999996666


Q ss_pred             eEEEecCCCEEEEcCCCCHHHHHHHhccCCcccccccCCCcceecccccCCcccccCCCcccccCCcccc---ccccccE
Q psy15832       1618 ILSVDEEKKTVKVEPYVTMGQLTRYLIPRGWTIPVVVELDDVTVGLLTKILQYIWRQAGRVAHFDPAQPE---WKSQQHA 1694 (2157)
Q Consensus      1618 ILEID~ENMTVtVEPGVTMgDLvEALLP~GLfpPVVPEfdgATVGGnIAGTdVEGSSSHRhG~Fd~TV~s---~~~qg~~ 1694 (2157)
                      ||++|+++|||+|||+|+|+||.++|.|+||++||+||++++||||+|.|+|+| ++||++|+|.+++.+   ...+|+ 
T Consensus       114 ILeld~ekmtvrvEP~Vtmgqis~~lip~g~tLaV~~EldDlTvGGLinG~Gie-s~ShkyGlfq~~~~aYEvVladGe-  191 (543)
T KOG1262|consen  114 ILELDEEKMTVRVEPLVTMGQISKFLIPKGYTLAVLPELDDLTVGGLINGVGIE-SSSHKYGLFQHICTAYEVVLADGE-  191 (543)
T ss_pred             HHhcchhcceEEecCCccHHHHHHHhccCCceeeeecccccceecceeeecccc-cccchhhhHHhhhheeEEEecCCe-
Confidence            999999999999999999999999999999999999999999999999999999 999999999999998   456666 


Q ss_pred             EEEecccc
Q psy15832       1695 IVHLCSLL 1702 (2157)
Q Consensus      1695 ~Vh~CS~~ 1702 (2157)
                       +..|-+.
T Consensus       192 -lv~~t~d  198 (543)
T KOG1262|consen  192 -LVRVTPD  198 (543)
T ss_pred             -EEEecCC
Confidence             4445443

>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage	Back alignment and domain information

>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion]	Back alignment and domain information

>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases	Back alignment and domain information

>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase	Back alignment and domain information

>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional	Back alignment and domain information

>TIGR01676 GLDHase galactonolactone dehydrogenase	Back alignment and domain information

>TIGR00387 glcD glycolate oxidase, subunit GlcD	Back alignment and domain information

>PLN02805 D-lactate dehydrogenase [cytochrome]	Back alignment and domain information

>PRK11230 glycolate oxidase subunit GlcD; Provisional	Back alignment and domain information

>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase	Back alignment and domain information

>PLN02441 cytokinin dehydrogenase	Back alignment and domain information

>PLN02465 L-galactono-1,4-lactone dehydrogenase	Back alignment and domain information

>KOG4730\|consensus	Back alignment and domain information

>PRK11183 D-lactate dehydrogenase; Provisional	Back alignment and domain information

>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional	Back alignment and domain information

>KOG1232\|consensus	Back alignment and domain information

>KOG1231\|consensus	Back alignment and domain information

>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase	Back alignment and domain information

>KOG1233\|consensus	Back alignment and domain information

>PTZ00368 universal minicircle sequence binding protein (UMSBP); Provisional	Back alignment and domain information

>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional	Back alignment and domain information

>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional	Back alignment and domain information

>PTZ00368 universal minicircle sequence binding protein (UMSBP); Provisional	Back alignment and domain information

>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional	Back alignment and domain information

>COG5082 AIR1 Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]	Back alignment and domain information

>COG5082 AIR1 Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]	Back alignment and domain information

>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional	Back alignment and domain information

>PRK14653 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional	Back alignment and domain information

>KOG4400\|consensus	Back alignment and domain information

>PF00098 zf-CCHC: Zinc knuckle; InterPro: IPR001878 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule	Back alignment and domain information

>KOG4400\|consensus	Back alignment and domain information

>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		2157
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-16
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-13
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-13
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-13
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-10
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-08
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-06
4feh_A		481	Oxidoreductase DPRE1; alpha+beta, decaprenylphosph	6e-10
2vfr_A		422	Xylitol oxidase, alditol oxidase; FAD, sugar, poly	8e-10
3js8_A		540	Cholesterol oxidase; cholsterol, organic solvent s	1e-06
1w1o_A		534	Cytokinin dehydrogenase 1; flavin, oxidoreductase,	5e-05
2uuu_A		584	Alkyldihydroxyacetonephosphate synthase; transfera	9e-05
2lli_A		124	Protein AIR2; RNA surveillance, RNA degradation, R	1e-04
2lli_A		124	Protein AIR2; RNA surveillance, RNA degradation, R	8e-04
1wvf_A		520	4-cresol dehydrogenase [hydroxylating] flavoprote	1e-04
1e8g_A		560	Vanillyl-alcohol oxidase; oxidoreductase, flavoenz	2e-04
2bvf_A		459	6-hydroxy-D-nicotine oxidase; autoflavinylation, e	3e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 85.3 bits (210), Expect = 2e-16
 Identities = 97/642 (15%), Positives = 198/642 (30%), Gaps = 193/642 (30%)

Query: 451 SGSQDDSHSNGKV--KYRPETDKNPKVNDIPTRNNTQSLF-KAPYKHIPI--PTVHKIRS 505
           +G     +    +   +      N    D+   +  +S+  K    HI +    V     
Sbjct: 11  TGEHQ--YQYKDILSVFEDAFVDNFDCKDVQ--DMPKSILSKEEIDHIIMSKDAVSGTLR 66

Query: 506 NKNILNTKNEKVLANKKDTVPEDVSTNEN--GQNILNHTVNKASTKNTILPIVKTDNLMQ 563
               L +K E+++   +  V E +  N       I   T  +  +  T + I + D L  
Sbjct: 67  LFWTLLSKQEEMV---QKFVEEVLRINYKFLMSPI--KTEQRQPSMMTRMYIEQRDRLYN 121

Query: 564 QNRIIQSYNCNLNLVKPATVQKPPHTIVNSKKVNRILRRM------GMEGFNKKFPFIDA 617
            N++   YN          V +     +  ++    LR        G+ G  K +  +D 
Sbjct: 122 DNQVFAKYN----------VSRLQP-YLKLRQALLELRPAKNVLIDGVLGSGKTWVALDV 170

Query: 618 LPATPPQCRENGTGF-------------------------KNYNGYNNSTIA-KEEVEEM 651
             +   QC+ +   F                          N+   ++ +   K  +  +
Sbjct: 171 CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI 230

Query: 652 EE-----------TDCLVMEMEDDLQDVREPK--DA------------DSEVSEQLSSQT 686
           +             +CL+      L +V+  K  +A              +V++ LS+ T
Sbjct: 231 QAELRRLLKSKPYENCLL-----VLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAAT 285

Query: 687 TCEDKVPVPDMTQPLADKE--EVVEKSI-----SLPRKEGEELNQMPVPIPNITDMTQPL 739
           T    + +   +  L   E   ++ K +      LPR   E L   P  +  I +     
Sbjct: 286 TTH--ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR---EVLTTNPRRLSIIAESI--- 337

Query: 740 VEKEGGVEKSPNRSQR-KDEKLNFVSKIMENSLHKEDQIQNK------GIVPEQSTSFPN 792
             ++G            K    + ++ I+E+SL+  +  + +       + P       +
Sbjct: 338 --RDG-----LATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPP------S 384

Query: 793 VHVP---------DKESTSPNKMNNDLSPNKSDDTTSLTSTTSSGLKSPSNLLTSNETPC 843
            H+P         D   +    + N L    S                   L+   + P 
Sbjct: 385 AHIPTILLSLIWFDVIKSDVMVVVNKLH-KYS-------------------LV--EKQPK 422

Query: 844 QSLQSPPSIFPKCIQNRLAKIRSTHNLPI--YNITPMSNLAHNTRPGEKTNM----NLGV 897
           +S  S PSI+ + ++ +L    + H   +  YNI        +       +     ++G 
Sbjct: 423 ESTISIPSIYLE-LKVKLENEYALHRSIVDHYNIP--KTFDSDDLIPPYLDQYFYSHIGH 479

Query: 898 HGLKSNEMSP-----PSL--------NKVDIQDAVKPVQASPTDISNQVS-Y-----NNN 938
           H LK+ E          +         K+           S  +   Q+  Y     +N+
Sbjct: 480 H-LKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDND 538

Query: 939 PEPTLVGNQTFSF---YGQK----RSSDIT--APFEKESTVF 971
           P+   + N    F     +     + +D+   A   ++  +F
Sbjct: 539 PKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIF 580

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>4feh_A Oxidoreductase DPRE1; alpha+beta, decaprenylphosphoryl-beta-D-RIBO; HET: FAD; 2.04A {Mycobacterium tuberculosis} PDB: 4fdo_A* 4fdn_A* 4fdp_A* 4ff6_A* Length = 481	Back alignment and structure

>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A* Length = 422	Back alignment and structure

>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP} Length = 540	Back alignment and structure

>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A* Length = 534	Back alignment and structure

>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A* Length = 584	Back alignment and structure

>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae} Length = 124	Back alignment and structure

>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae} Length = 124	Back alignment and structure

>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A* Length = 520	Back alignment and structure

>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A* Length = 560	Back alignment and structure

>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, NI degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A* Length = 459	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		2157
2i0k_A		561	Oxidoreductase; MIX alpha beta, covalent FAD, flav	99.39
4feh_A		481	Oxidoreductase DPRE1; alpha+beta, decaprenylphosph	99.38
4bby_A		658	Alkyldihydroxyacetonephosphate synthase, peroxiso;	99.35
2vfr_A		422	Xylitol oxidase, alditol oxidase; FAD, sugar, poly	99.25
3pm9_A		476	Putative oxidoreductase; putative D-2-hydroxygluta	99.11
1f0x_A		571	DLDH, D-lactate dehydrogenase; oxidoreductase; HET	99.08
2bvf_A		459	6-hydroxy-D-nicotine oxidase; autoflavinylation, e	99.07
2uuu_A		584	Alkyldihydroxyacetonephosphate synthase; transfera	99.01
1w1o_A		534	Cytokinin dehydrogenase 1; flavin, oxidoreductase,	98.97
3js8_A		540	Cholesterol oxidase; cholsterol, organic solvent s	98.97
3rja_A		473	Carbohydrate oxidase; protein-substrate analogue c	98.95
1wvf_A		520	4-cresol dehydrogenase [hydroxylating] flavoprote	98.93
1e8g_A		560	Vanillyl-alcohol oxidase; oxidoreductase, flavoenz	98.9
3fw9_A		495	Reticuline oxidase; BI-covalent flavinylation, N-g	98.88
3tsh_A		500	Pollen allergen PHL P 4; flavoprotein, BI-covalent	98.88
2wdx_A		523	Putative hexose oxidase; oxidoreductase-antibiotic	98.88
2y3s_A		530	TAML; oxidoreductase; HET: FAD TIR; 1.67A {Strepto	98.85
2exr_A		524	Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin	98.85
2ipi_A		521	Aclacinomycin oxidoreductase (aknox); anthracyclin	98.85
3pop_A		501	GILR oxidase; FAD binding protein, gilvocarcin, gi	98.8
1zr6_A		503	Glucooligosaccharide oxidase; alpha + beta, flavoe	98.75
3vte_A		518	Tetrahydrocannabinolic acid synthase; BI-covalent	98.74
2yvs_A		219	Glycolate oxidase subunit GLCE; oxidoreductase; 2.	98.58
1hsk_A		326	UDP-N-acetylenolpyruvoylglucosamine reductase; pep	98.34
3tx1_A		322	UDP-N-acetylenolpyruvoylglucosamine reductase; str	97.77
2a51_A		39	Nucleocapsid protein; sivlhoest, structure, NCP8,	97.72
2bl6_A		37	Nucleocapsid protein P11; lentivirus, polyprotein,	97.72
2lli_A		124	Protein AIR2; RNA surveillance, RNA degradation, R	97.66
3nyb_B		83	Protein AIR2; polya RNA polymerase, zinc knuckle p	97.61
2cqf_A		63	RNA-binding protein LIN-28; CCHC zinc-finger, stru	97.61
1a1t_A		55	Nucleocapsid protein; stem-loop RNA, viral protein	97.55
2ec7_A		49	GAG polyprotein (PR55GAG); nucleocapsid protein, H	97.52
2ihx_A		61	Nucleocapsid (NC) protein; protein-RNA complex, vi	97.52
2lli_A		124	Protein AIR2; RNA surveillance, RNA degradation, R	97.4
2li8_A		74	Protein LIN-28 homolog A; zinc finger, micro RNA,	97.35
1cl4_A		60	Protein (GAG polyprotein); nucleocapsid protein, R	97.17
3ts2_A		148	Protein LIN-28 homolog A; microrna biogenesis, pro	97.14
1uxy_A		340	MURB, uridine diphospho-N-acetylenolpyruvylglucosa	96.94
3i99_A		357	UDP-N-acetylenolpyruvoylglucosamine reductase; str	96.68
2gqt_A		268	UDP-N-acetylenolpyruvylglucosamine reductase; pept	96.46
2li8_A		74	Protein LIN-28 homolog A; zinc finger, micro RNA,	95.94
2a51_A		39	Nucleocapsid protein; sivlhoest, structure, NCP8,	93.66
3nyb_B		83	Protein AIR2; polya RNA polymerase, zinc knuckle p	93.26
2ec7_A		49	GAG polyprotein (PR55GAG); nucleocapsid protein, H	93.2
3ts2_A		148	Protein LIN-28 homolog A; microrna biogenesis, pro	92.06
2cqf_A		63	RNA-binding protein LIN-28; CCHC zinc-finger, stru	91.93
2bl6_A		37	Nucleocapsid protein P11; lentivirus, polyprotein,	91.82
1a1t_A		55	Nucleocapsid protein; stem-loop RNA, viral protein	91.6
1nc8_A		29	Nucleocapsid protein; HIV-2, RNA recognition, zinc	89.99
2ihx_A		61	Nucleocapsid (NC) protein; protein-RNA complex, vi	88.4
1cl4_A		60	Protein (GAG polyprotein); nucleocapsid protein, R	87.69
1dsq_A		26	Nucleic acid binding protein P14; CCHC type zinc f	86.56
1a6b_B		40	Momulv, zinc finger protein NCP10; nucleocapsid pr	84.39
1u6p_A		56	GAG polyprotein; MLV, A-minor K-turn, stem loop, b	81.13

>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET: FAD; 1.60A {Brevibacterium sterolicum} SCOP: d.58.32.3 d.145.1.1 PDB: 1i19_A*	Back alignment and structure

Probab=99.39  E-value=4.4e-13  Score=154.75  Aligned_cols=122  Identities=11%  Similarity=0.067  Sum_probs=99.1

Q ss_pred             hccCCCCCeeecCCCCccccccCcccCCCcceeec-cCCCceEEEec--CCCEEEEcCCCCHHHHHHHhccCCccccccc
Q psy15832       1578 IKTDQSIPMCTGRAGWKCMSLREPKYKSSMFPVDL-EAMDTILSVDE--EKKTVKVEPYVTMGQLTRYLIPRGWTIPVVV 1654 (2157)
Q Consensus      1578 ~~hGrk~~MCTARPgWSTnSTRp~kYKrs~ivIDL-SrLNRILEID~--ENMTVtVEPGVTMgDLvEALLP~GLfpPVVP 1654 (2157)
                      ++++.+..++.|..+|...+..........++||+ ++||+| +||+  ++++|+|||||++++|.+++.++||++|++|
T Consensus        56 ~~~~~~v~~~G~G~s~~~~~l~~~~~~~~gvvIdl~~~l~~i-~vd~~~~~~~v~v~aGv~l~~L~~~l~~~Gl~l~~~~  134 (561)
T 2i0k_A           56 HEHDYKIRPRGAMAGWTPLTVEKGANVEKVILADTMTHLNGI-TVNTGGPVATVTAGAGASIEAIVTELQKHDLGWANLP  134 (561)
T ss_dssp             HHHTCEEEEECCCCCCCTTSSCTTCCCTTEEEEECTTTSCCE-EEECCSSSCEEEEETTSBHHHHHHHHHHTTEECSSCC
T ss_pred             HHCCCcEEEECCCCCcccccccCCCcCCCeEEEechhhCCce-EecCcCCccEEEEcCCCCHHHHHHHHHHcCCcccccC
Confidence            34666677777777775444332212234689999 899998 9999  8999999999999999999999999999999


Q ss_pred             CCCcceecccccCCcccccC----------CCcccccCCcccc---ccccccEE-EEeccc
Q psy15832       1655 ELDDVTVGLLTKILQYIWRQ----------AGRVAHFDPAQPE---WKSQQHAI-VHLCSL 1701 (2157)
Q Consensus      1655 EfdgATVGGnIAGTdVEGSS----------SHRhG~Fd~TV~s---~~~qg~~~-Vh~CS~ 1701 (2157)
                      +.+++||||+|+. ++||.+          ++++|.+.++|.+   +..+|+++ +..|++
T Consensus       135 ~~~~~TvGG~i~~-~~~G~~l~~gG~~~~s~~~~G~~~d~V~~~evV~~dG~~~~~~~~~~  194 (561)
T 2i0k_A          135 APGVLSIGGALAV-NAHGAALPAVGQTTLPGHTYGSLSNLVTELTAVVWNGTTYALETYQR  194 (561)
T ss_dssp             SCTTCBHHHHHHT-TCCCSCCCCTTCCCCTTCCSSCGGGGEEEEEEEEECSSSEEEEEEET
T ss_pred             CCCCcccCCCccc-CCcccccccCCcccccccccccHhheEEEEEEEeCCCCEEEeeeccC
Confidence            9999999999986 999987          9999999999999   56677632 344665

PyMOL of 2i0k

>4feh_A Oxidoreductase DPRE1; alpha+beta, decaprenylphosphoryl-beta-D-RIBO; HET: FAD; 2.04A {Mycobacterium tuberculosis} PDB: 4fdo_A* 4fdn_A* 4fdp_A* 4ff6_A* 4aut_A* 4f4q_A* 4g3t_A 4g3u_A	Back alignment and structure

>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*	Back alignment and structure

>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A*	Back alignment and structure

>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris}	Back alignment and structure

>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: d.58.32.2 d.145.1.1	Back alignment and structure

>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, NI degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A*	Back alignment and structure

>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A*	Back alignment and structure

>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A*	Back alignment and structure

>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP}	Back alignment and structure

>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD binding domain, BERB berberine-like domain, glucooligosaccharide oxidase; HET: FAD NAG ABL TRS; 2.10A {Microdochium nivale} PDB: 3rj8_A*	Back alignment and structure

>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*	Back alignment and structure

>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A*	Back alignment and structure

>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation, alakloid biosynt oxidoreductase, alkaloid metabolism; HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica} PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 4ec3_A* 3fw8_A* 3fw7_A* 3fwa_A*	Back alignment and structure

>3tsh_A Pollen allergen PHL P 4; flavoprotein, BI-covalent flavinylation, oxidoreductase, Glu dehydrogenase, N-glycosylation, allergy, dehydrogenase; HET: FDA; 1.90A {Phleum pratense} PDB: 3tsj_A*	Back alignment and structure

>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex, glycopeptide; HET: FAD GHP 3MY 3FG OMY BMA NAG N1L T55; 2.30A {Nonomuraea SP} PDB: 2wdw_A*	Back alignment and structure

>2y3s_A TAML; oxidoreductase; HET: FAD TIR; 1.67A {Streptomyces SP} PDB: 2y3r_A* 2y08_A* 2y4g_A*	Back alignment and structure

>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A*	Back alignment and structure

>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme, twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces galilaeus}	Back alignment and structure

>3pop_A GILR oxidase; FAD binding protein, gilvocarcin, gilvocarcin biosynthesis, covalently bound FAD, oxidoreductase; HET: FAD; 1.65A {Streptomyces griseoflavus} PDB: 3pqb_A*	Back alignment and structure

>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A*	Back alignment and structure

>3vte_A Tetrahydrocannabinolic acid synthase; BI-covalent flavinylation, oxidoreductase; HET: NAG FAD; 2.75A {Cannabis sativa}	Back alignment and structure

>2yvs_A Glycolate oxidase subunit GLCE; oxidoreductase; 2.00A {Thermus thermophilus}	Back alignment and structure

>1hsk_A UDP-N-acetylenolpyruvoylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP, flavoprotein, FAD; HET: FAD; 2.30A {Staphylococcus aureus} SCOP: d.145.1.2 d.146.1.1	Back alignment and structure

>3tx1_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: FAD; 2.69A {Listeria monocytogenes}	Back alignment and structure

>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}	Back alignment and structure

>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}	Back alignment and structure

>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}	Back alignment and structure

>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}	Back alignment and structure

>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}	Back alignment and structure

>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A	Back alignment and structure

>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1	Back alignment and structure

>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}	Back alignment and structure

>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}	Back alignment and structure

>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}	Back alignment and structure

>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A	Back alignment and structure

>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*	Back alignment and structure

>1uxy_A MURB, uridine diphospho-N-acetylenolpyruvylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP; HET: FAD EPU; 1.80A {Escherichia coli} SCOP: d.145.1.2 d.146.1.1 PDB: 1mbb_A* 1mbt_A* 2q85_A* 2mbr_A*	Back alignment and structure

>3i99_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural of infectious diseases, csgid; HET: FAD; 2.20A {Vibrio cholerae}	Back alignment and structure

>2gqt_A UDP-N-acetylenolpyruvylglucosamine reductase; peptidoglycan biosynthesis, enolpyruvyl-UDP-N- acetylglucosamine, flavin adenine dinucleotide; HET: FAD; 1.30A {Thermus caldophilus} PDB: 2gqu_A*	Back alignment and structure

>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}	Back alignment and structure

>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}	Back alignment and structure

>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}	Back alignment and structure

>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1	Back alignment and structure

>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*	Back alignment and structure

>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}	Back alignment and structure

>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}	Back alignment and structure

>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A	Back alignment and structure

>1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus 2} SCOP: g.40.1.1 PDB: 2di2_A	Back alignment and structure

>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}	Back alignment and structure

>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A	Back alignment and structure

>1dsq_A Nucleic acid binding protein P14; CCHC type zinc finger, virus/viral protein; NMR {Mouse mammary tumor virus} SCOP: g.40.1.1	Back alignment and structure

>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1	Back alignment and structure

>1u6p_A GAG polyprotein; MLV, A-minor K-turn, stem loop, bulge, G-U mismatch, G-A MIS U mismatch, A-C mismatch, zinc finger, NC, viral protein-RN; HET: AP7; NMR {Moloney murine leukemia virus} SCOP: g.40.1.1 PDB: 1wwd_A 1wwe_A 1wwf_A 1wwg_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		2157
d1w1oa2		206	Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId	99.44
d1wvfa2		236	Flavoprotein subunit of p-cresol methylhydroxylase	99.44
d2i0ka2		216	Cholesterol oxidase {Brevibacterium sterolicum [Ta	99.13
d1e8ga2		268	Vanillyl-alcohol oxidase {Fungus (Penicillium simp	99.07
d1f0xa2		265	D-lactate dehydrogenase {Escherichia coli [TaxId:	98.85
d2exfa1		42	HIV nucleocapsid {Human immunodeficiency virus typ	97.72
d1hska1		194	Uridine diphospho-N-Acetylenolpyruvylglucosamine r	96.31
d1uxya1		198	Uridine diphospho-N-Acetylenolpyruvylglucosamine r	95.5
d2exfa1		42	HIV nucleocapsid {Human immunodeficiency virus typ	94.99
d1nc8a_		29	HIV nucleocapsid {Human immunodeficiency virus typ	93.98

>d1w1oa2 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]}	Back information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: FAD-linked oxidases, N-terminal domain
domain: Cytokinin dehydrogenase 1
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.44  E-value=5.2e-14  Score=141.26  Aligned_cols=97  Identities=16%  Similarity=0.040  Sum_probs=88.8

Q ss_pred             CCcceeeccCCCce-----EEEecCCCEEEEcCCCCHHHHHHHhccCCcccccccCCCcceecccccCCcccccCCCccc
Q psy15832       1605 SSMFPVDLEAMDTI-----LSVDEEKKTVKVEPYVTMGQLTRYLIPRGWTIPVVVELDDVTVGLLTKILQYIWRQAGRVA 1679 (2157)
Q Consensus      1605 rs~ivIDLSrLNRI-----LEID~ENMTVtVEPGVTMgDLvEALLP~GLfpPVVPEfdgATVGGnIAGTdVEGSSSHRhG 1679 (2157)
                      +..+.|||++||+|     +++|+++.+++|||||++.||.+++.++||++|+.|....+||||+|++ +++|.++++||
T Consensus        75 ~~~ividl~~l~~i~~~~~~~id~~~~~v~v~aG~~~~~l~~~l~~~Gl~~~~~~~~~~~tvGG~i~~-~g~g~~s~~~G  153 (206)
T d1w1oa2          75 PGGVVVNMASLGDAAAPPRINVSADGRYVDAGGEQVWIDVLRASLARGVAPRSWTDYLYLTVGGTLSN-AGISGQAFRHG  153 (206)
T ss_dssp             TTSEEEEGGGGGCSSSSCSEEECTTSSEEEEETTCBHHHHHHHHHTTTEEESCCCSSCCSBHHHHHTT-CCCSTTHHHHC
T ss_pred             CCCEeeeccccceeeeceeEEEecCCCEEEEEcceehhhhhhhhhccccccccCCccCceEEeeeecc-ccceecccccc
Confidence            34689999999999     8999999999999999999999999999999998888889999999998 77779999999


Q ss_pred             ccCCcccc---ccccccEEEEecccccc
Q psy15832       1680 HFDPAQPE---WKSQQHAIVHLCSLLQI 1704 (2157)
Q Consensus      1680 ~Fd~TV~s---~~~qg~~~Vh~CS~~~~ 1704 (2157)
                      .+.++|.+   +..+|+  ++.|++-+-
T Consensus       154 ~~~d~v~~~evV~~~G~--~~~~s~~~~  179 (206)
T d1w1oa2         154 PQISNVLEMDVITGHGE--MVTCSKQLN  179 (206)
T ss_dssp             CGGGSEEEEEEEETTSC--EEEEESSSS
T ss_pred             ceeeeeeEEEEEcCCCc--EEEECCCCC
Confidence            99999999   789999  777887643

PyMOL of d1w1oa2

>d1wvfa2 d.145.1.1 (A:7-242) Flavoprotein subunit of p-cresol methylhydroxylase {Pseudomonas putida [TaxId: 303]}	Back information, alignment and structure

>d2i0ka2 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibacterium sterolicum [TaxId: 1702]}	Back information, alignment and structure

>d1e8ga2 d.145.1.1 (A:6-273) Vanillyl-alcohol oxidase {Fungus (Penicillium simplicissimum) [TaxId: 69488]}	Back information, alignment and structure

>d1f0xa2 d.145.1.1 (A:9-273) D-lactate dehydrogenase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2exfa1 g.40.1.1 (A:12-53) HIV nucleocapsid {Human immunodeficiency virus type 1, different isolates [TaxId: 11676]}	Back information, alignment and structure

>d1hska1 d.145.1.2 (A:15-208) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Staphylococcus aureus [TaxId: 1280]}	Back information, alignment and structure

>d1uxya1 d.145.1.2 (A:3-200) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2exfa1 g.40.1.1 (A:12-53) HIV nucleocapsid {Human immunodeficiency virus type 1, different isolates [TaxId: 11676]}	Back information, alignment and structure

>d1nc8a_ g.40.1.1 (A:) HIV nucleocapsid {Human immunodeficiency virus type 2 [TaxId: 11709]}	Back information, alignment and structure