Psyllid ID: psy15857

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-----
Protein Sequence
MKGPVAKSTVEKDADYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVIQNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAGKPKLFFIQACQGDKLDAGVTIRTQVDGHPSNTYSIPLHADFLMAYSTISDSPMFGQRFGLKDKCSKVVSKTYQVMSSNVDTSNGECQTDGHESHTNGSAVGKDEGDVLGFKFQTDGHESHTNGSAVGKDEGDVLGFNFGRTRMKGPVAKSTVEKDADYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVIQNAIDEGPVAKSTVEKDADYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVIQNAIDEGKDALIPSLFLPHSNKAGVFY
Secondary Structure (PSIPRED)
cccccccccccccccccccccccEEEEEEEEccccccccccccccHHHHHHHHHHHHHHcccEEEEEccccHHHHHHHHHHHHHcccccccEEEEEEEcccccccEEEEcccccHHHHcccccccccccccccccEEEEEccccccccccEEEEEcccccccccccccccccEEEEEEcccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccccccccccHHHHHHHHHHHHHcccEEEEEccccHHHHHHHcccccccccccccccEEcccccccccEEEEEEcccccccccccccccHHHHHHHHHHHHHcccEEEEEccccHHHHHHHHHHccccEEEEEEccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccHHEcccccccEEEEEEcccccHHHcccccccHHHHHHHHHHHHHHHccEEEEEEcccHHHHHHHHHHHHccccccEEEEEEEEEccEEccEEEccccEEEHHHHHHHHcHHHHHHHccccEEEEEEcccccEcEccEccccccccccccccEccccccEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHccccccccccccEccccccccccccccccccccccccccccccccccccccccccccHHHcccccccEEEEEEEccccEcccccccccccccHHHHHHHHHHcccEEEEcccccHHHHHHHHHHcccccccccccHHHHccccccccEEEEEEccccccccccccccccccHHHHHHHHHHcccEEEEEccccHHHHHHHHHHccccEEEEEEEEcccccEEEc
Coil and Loop (DISEMBL)
mkgpvakstvekdadyyrmdhkHRGLALIfnhehfdsphlksragtgadfENLYTTLVNLGfvvkpyhdpefKVIQNAIDEaaeqdytdadCFVMAVLThgedgilhakdvpykpknlwskftadncltlagkpKLFFIQACqgdkldagvtirtqvdghpsntysiplhADFLMAYstisdspmfgqrfglkdkcskVVSKTYQVMSSnvdtsngecqtdgheshtngsavgkdegdvlgfkfqtdgheshtngsavgkdegdvlgfnfgrtrmkgpvakstvekdadyyrmdhkHRGLALIfnhehfdsphlksragtgadfENLYTTLVNLGfvvkpyhdpefKVIQNAIdegpvakstvekdadyyrmdhkHRGLALIfnhehfdsphlksragtgadfENLYTTLVNLGfvvkpyhdpefKVIQNAIDEgkdalipslflphsnkagvfy
Flexible Loop (DISEMBL)
mkgpvakstvekdadyyRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVIQNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAGKPKLFFIQACQGDKLDAGVTIRTQVDGHPSNTYSIPLHADFLMAYSTISDSPMFGQRFGLKDKCSKVVSKTYQVMSSNVDTSNGECQTDGHESHTNGSAVGKDEGDVLGFKFQTDGHEshtngsavgkdegDVLGFNfgrtrmkgpvakstvekdaDYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVIQnaidegpvakSTVEKDADYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVIQNAIDEGKDALipslflphsnkagvfy
Low Complexity Region (SEG)
MKGPVAKSTVEKDADYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVIQNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAGKPKLFFIQACQGDKLDAGVTIRTQVDGHPSNTYSIPLHADFLMAYSTISDSPMFGQRFGLKDKCSKVVSKTYQVMSSNVDTSNGECQTDGHESHTNGSAVGKDEGDVLGFKFQTDGHESHTNGSAVGKDEGDVLGFNFGRTRMKGPVAKSTVEKDADYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVIQNAIDEGPVAKSTVEKDADYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVIQNAIDEGKDALIPSLFLPHSNKAGVFY
Disordered region (IsUnstruct)
***************YYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVIQNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAGKPKLFFIQACQGDKLDAGVTIRTQVDGHPSNTYSIPLHADFLMAYSTISDSPMFGQRFGLKDKCSKVVSKTY************************************************************VLGFNFGRT**********VEKDADYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVIQNAIDEGPVAKSTVEKDADYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVIQNAIDEGKDALIPSLFLP*********
Disordered Region (DISOPRED)
****************YRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVIQNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAGKPKLFFIQACQGDKLDAG****************IPLHADFLMAYSTISDSPMFGQRFGLKDKCSKVVSKTYQVMSSNVDTSNGECQTDGHESHTNGSAVGKDEGDVLGFKFQTDGHESHTNGSAVGK****************************DYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVIQNAIDEGPVAKSTVEKDADYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVIQNAIDEGKDALIPSLFLPHSNKAGVFY
Disordered Region (DISEMBL)
*********VEKDADYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVIQNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAGKPKLFFIQACQGDKLDAGVTIRTQVDGHPSNTYSIPLHADFLMAYSTISDSPMFGQRFGLKDKCSKVVSKTYQVMSSN*******************SAVGKDEGDVLGFKFQTDGHESHTNGSAVGKDEGDVLGFNFGRTRMKGPVAKSTVEKDADYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVIQNAIDEGPVAKSTVEKDADYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVIQNAIDEGKDALIPSLFLPHSNKAGVFY
Disordered Region (DISPRO)
***********KDADYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVIQNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAGKPKLFFIQACQGDKLDAGVTIRTQVDGHPSNTYSIPLHADFLMAYSTISDSPMFGQRFGLKDKCSKVVSKTYQVMSSNVDTSNG********************************************************************EKDADYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVIQNAIDEGPVAKSTVEKDADYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVIQNAIDEGKDALIPSLFLPHSNKAGVFY
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKGPVAKSTVEKDADYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVIQNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAGKPKLFFIQACQGDKLDAGVTIRTQVDGHPSNTYSIPLHADFLMAYSTISDSPMFGQRFGLKDKCSKVVSKTYQVMSSNVDTSNGECQTDGHESHTNGSAVGKDEGDVLGFKFQTDGHESHTNGSAVGKDEGDVLGFNFGRTRMKGPVAKSTVEKDADYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVIQNAIDEGPVAKSTVEKDADYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVIQNAIDEGKDALIPSLFLPHSNKAGVFY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	455	2.2.26 [Sep-21-2011]
P89116	299	Caspase-1 OS=Spodoptera f	N/A	N/A	0.386	0.588	0.593	6e-57
O01382	339	Caspase OS=Drosophila mel	yes	N/A	0.386	0.519	0.564	5e-53
O02002	323	Caspase-1 OS=Drosophila m	no	N/A	0.386	0.544	0.553	6e-51
P55214	303	Caspase-7 OS=Mesocricetus	N/A	N/A	0.351	0.528	0.409	1e-28
P97864	303	Caspase-7 OS=Mus musculus	yes	N/A	0.386	0.580	0.377	7e-28
O08738	276	Caspase-6 OS=Mus musculus	no	N/A	0.360	0.594	0.405	7e-28
P55210	303	Caspase-7 OS=Homo sapiens	yes	N/A	0.373	0.561	0.395	7e-28
P55212	293	Caspase-6 OS=Homo sapiens	no	N/A	0.364	0.566	0.396	1e-27
Q3T0P5	293	Caspase-6 OS=Bos taurus G	yes	N/A	0.353	0.549	0.410	1e-27
O35397	277	Caspase-6 OS=Rattus norve	no	N/A	0.353	0.581	0.407	5e-27

>sp|P89116|CASP1_SPOFR Caspase-1 OS=Spodoptera frugiperda PE=1 SV=1

 Score =  222 bits (565), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 105/177 (59%), Positives = 133/177 (75%), Gaps = 1/177 (0%)

Query: 5   VAKSTVEKDADYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVV 64
           VA+  V+++A YY M+HKHRG+A+IFNHEHFD   LKSR GT  D +NL   L  LGF V
Sbjct: 41  VARMPVDRNAPYYNMNHKHRGMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGFKV 100

Query: 65  KPYHDPEFKVIQNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTA 124
             + + + + I   I + AE D++DADC ++AVLTHGE G+L+AKD  YKP NLW  FTA
Sbjct: 101 TVFPNLKSEEINKFIQQTAEMDHSDADCLLVAVLTHGELGMLYAKDTHYKPDNLWYYFTA 160

Query: 125 DNCLTLAGKPKLFFIQACQGDKLDAGVTI-RTQVDGHPSNTYSIPLHADFLMAYSTI 180
           D C TLAGKPKLFFIQACQGD+LD G+T+ RT+ DG PS +Y IP+HADFL+A+ST+
Sbjct: 161 DKCPTLAGKPKLFFIQACQGDRLDGGITLSRTETDGSPSTSYRIPVHADFLIAFSTV 217

Involved in the activation cascade of caspases responsible for apoptosis execution (By similarity). Inhibited by the baculovirus anti-apoptotic protein p35. Cleaves p35 and nuclear immunophilin FKBP46.
Spodoptera frugiperda (taxid: 7108)
EC: 3EC: .EC: 4EC: .EC: 2EC: 2EC: .EC: -

>sp|O01382|ICE_DROME Caspase OS=Drosophila melanogaster GN=Ice PE=1 SV=2

 Score =  209 bits (531), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 101/179 (56%), Positives = 130/179 (72%), Gaps = 3/179 (1%)

Query: 5   VAKSTVEKDADYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVV 64
           VAK   ++ A  Y M HK+RG+ALIFNHEHF+ P LKSRAGT  D ENL   L  L F V
Sbjct: 74  VAKMVTDRHAAEYNMRHKNRGMALIFNHEHFEVPTLKSRAGTNVDCENLTRVLKQLDFEV 133

Query: 65  KPYHDPEFKVIQNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTA 124
             Y D  +K I   I+ AA Q+++D+DC ++A+L+HGE G ++AKD  YK  N+WS FTA
Sbjct: 134 TVYKDCRYKDILRTIEYAASQNHSDSDCILVAILSHGEMGYIYAKDTQYKLDNIWSFFTA 193

Query: 125 DNCLTLAGKPKLFFIQACQGDKLDAGVTI---RTQVDGHPSNTYSIPLHADFLMAYSTI 180
           ++C +LAGKPKLFFIQACQGD+LD GVT+   +T+ DG  S +Y IP+HADFL+AYST+
Sbjct: 194 NHCPSLAGKPKLFFIQACQGDRLDGGVTMQRSQTETDGDSSMSYKIPVHADFLIAYSTV 252

Involved in the activation cascade of caspases responsible for apoptosis execution. Acts downstream of rpr. Cleaves baculovirus p35 and lamin DmO in vitro.

Drosophila melanogaster (taxid: 7227)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: -

>sp|O02002|CASP1_DROME Caspase-1 OS=Drosophila melanogaster GN=Dcp-1 PE=1 SV=1

 Score =  202 bits (513), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 99/179 (55%), Positives = 122/179 (68%), Gaps = 3/179 (1%)

Query: 5   VAKSTVEKDADYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVV 64
           VA+  VE+ A  Y M HKHRG+ALIFNHE FD P LKSR GT  D + L     NLGF V
Sbjct: 59  VARMPVERYASEYNMSHKHRGVALIFNHEFFDIPSLKSRTGTNVDAQELKKAFENLGFAV 118

Query: 65  KPYHDPEFKVIQNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTA 124
             + D + + I   + +AAE D+TD DC  +A+L+HGE G L+AKD  YK  N+W  FTA
Sbjct: 119 SVHKDCKLRDILKHVGKAAELDHTDNDCLAVAILSHGEHGYLYAKDTQYKLDNIWHYFTA 178

Query: 125 DNCLTLAGKPKLFFIQACQGDKLDAGVTIR---TQVDGHPSNTYSIPLHADFLMAYSTI 180
             C +LAGKPKLFFIQACQGD+LD G+T+    T+ DG  S +Y IP+HADFL +YSTI
Sbjct: 179 TFCPSLAGKPKLFFIQACQGDRLDGGITLEKGVTETDGESSTSYKIPIHADFLFSYSTI 237

Involved in the activation cascade of caspases responsible for apoptosis execution (By similarity). Proteolytically cleaves poly(ADP-ribose) polymerase (PARP). Loss of zygotic DCP-1 function causes larval lethality and melanotic tumors.

Drosophila melanogaster (taxid: 7227)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: -

>sp|P55214|CASP7_MESAU Caspase-7 OS=Mesocricetus auratus GN=CASP7 PE=1 SV=1

 Score =  127 bits (320), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 70/171 (40%), Positives = 101/171 (59%), Gaps = 11/171 (6%)

Query: 17  YRMDHKHRGLALIFNHEHFDS-PHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVI 75
           YRMD +  G  +I N+++FD    +  R GT  D E L+    +LGF V  Y+D     +
Sbjct: 60  YRMDFEKMGKCIIINNKNFDKVTGMDVRNGTDKDAEALFKCFRSLGFDVVVYNDCSCAKM 119

Query: 76  QNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAGKPK 135
           Q+ + +A+E+D++++ CF   +L+HGE+ +++ KD     K+L + F  D C TL  KPK
Sbjct: 120 QDLLRKASEEDHSNSACFACVLLSHGEENLIYGKDGVTPIKDLTAHFRGDRCKTLLEKPK 179

Query: 136 LFFIQACQGDKLDAGVTIRTQVDGHPSN------TYSIPLHADFLMAYSTI 180
           LFFIQAC+G +LD GV    Q D  P N       Y IP+ ADFL AYST+
Sbjct: 180 LFFIQACRGTELDDGV----QADSGPINETDANPRYKIPVEADFLFAYSTV 226

Involved in the activation cascade of caspases responsible for apoptosis execution. Cleaves and activates sterol regulatory element binding proteins (SREBPs). Proteolytically cleaves poly(ADP-ribose) polymerase (PARP) at a '216-Asp-|-Gly-217' bond. Overexpression promotes programmed cell death.

Mesocricetus auratus (taxid: 10036)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 6

EC: 0

>sp|P97864|CASP7_MOUSE Caspase-7 OS=Mus musculus GN=Casp7 PE=1 SV=2

 Score =  125 bits (314), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 69/183 (37%), Positives = 105/183 (57%), Gaps = 7/183 (3%)

Query: 3   GPVAKSTVEKDADYYRMDHKHRGLALIFNHEHFD-SPHLKSRAGTGADFENLYTTLVNLG 61
           GPV           YRMD +  G  +I N+++FD +  +  R GT  D   L+    NLG
Sbjct: 46  GPVRTGRDRVPTYLYRMDFQKMGKCIIINNKNFDKATGMDVRNGTDKDAGALFKCFQNLG 105

Query: 62  FVVKPYHDPEFKVIQNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSK 121
           F V  ++D     +Q+ + +A+E+D++++ CF   +L+HGE+ +++ KD     K+L + 
Sbjct: 106 FEVTVHNDCSCAKMQDLLRKASEEDHSNSACFACVLLSHGEEDLIYGKDGVTPIKDLTAH 165

Query: 122 FTADNCLTLAGKPKLFFIQACQGDKLDAGVTIRT----QVDGHPSNTYSIPLHADFLMAY 177
           F  D C TL  KPKLFFIQAC+G +LD G+   +     +D +P N   IP+ ADFL AY
Sbjct: 166 FRGDRCKTLLEKPKLFFIQACRGTELDDGIQADSGPINDIDANPRN--KIPVEADFLFAY 223

Query: 178 STI 180
           ST+
Sbjct: 224 STV 226

Involved in the activation cascade of caspases responsible for apoptosis execution. Cleaves and activates sterol regulatory element binding proteins (SREBPs). Overexpression promotes programmed cell death.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 6

EC: 0

>sp|O08738|CASP6_MOUSE Caspase-6 OS=Mus musculus GN=Casp6 PE=2 SV=1

 Score =  125 bits (314), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 73/180 (40%), Positives = 98/180 (54%), Gaps = 16/180 (8%)

Query: 14  ADYYRMDHKHRGLALIFNHEHF-DSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEF 72
           A+ Y+MDHK RG+ALIFNHE F     L  R GT AD +NL     +LGF VK ++D   
Sbjct: 17  AEQYKMDHKRRGVALIFNHERFFWHLTLPERRGTNADRDNLTRRFSDLGFEVKCFNDLRA 76

Query: 73  KVIQNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAG 132
           + +   I E +   + DADCF+   L+HGE   ++A D   + + L   F  D C +L G
Sbjct: 77  EELLLKIHEVSTSSHIDADCFICVFLSHGEGNHVYAYDAKIEIQTLTGLFKGDKCQSLVG 136

Query: 133 KPKLFFIQACQGDKLDAGVTIR-------------TQVDGHPSNTYSIPLHADFLMAYST 179
           KPK+F IQAC+G + D  V                TQVD   ++ Y++P  ADFLM YS 
Sbjct: 137 KPKIFIIQACRGSQHDVPVVPLDMVDHQTDKLDNVTQVDA--ASVYTLPAGADFLMCYSV 194

Involved in the activation cascade of caspases responsible for apoptosis execution. Cleaves poly(ADP-ribose) polymerase in vitro, as well as lamins. Overexpression promotes programmed cell death.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 5

EC: 9

>sp|P55210|CASP7_HUMAN Caspase-7 OS=Homo sapiens GN=CASP7 PE=1 SV=1

 Score =  125 bits (314), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 72/182 (39%), Positives = 106/182 (58%), Gaps = 12/182 (6%)

Query: 7   KSTVEKDADY-YRMDHKHRGLALIFNHEHFDS-PHLKSRAGTGADFENLYTTLVNLGFVV 64
           K+T ++   Y Y M+ +  G  +I N+++FD    +  R GT  D E L+    +LGF V
Sbjct: 49  KTTRDRVPTYQYNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDV 108

Query: 65  KPYHDPEFKVIQNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTA 124
             Y+D     +Q+ + +A+E+D+T+A CF   +L+HGE+ +++ KD     K+L + F  
Sbjct: 109 IVYNDCSCAKMQDLLKKASEEDHTNAACFACILLSHGEENVIYGKDGVTPIKDLTAHFRG 168

Query: 125 DNCLTLAGKPKLFFIQACQGDKLDAGVTIRTQVDGHPSN------TYSIPLHADFLMAYS 178
           D C TL  KPKLFFIQAC+G +LD G+    Q D  P N       Y IP+ ADFL AYS
Sbjct: 169 DRCKTLLEKPKLFFIQACRGTELDDGI----QADSGPINDTDANPRYKIPVEADFLFAYS 224

Query: 179 TI 180
           T+
Sbjct: 225 TV 226

Involved in the activation cascade of caspases responsible for apoptosis execution. Cleaves and activates sterol regulatory element binding proteins (SREBPs). Proteolytically cleaves poly(ADP-ribose) polymerase (PARP) at a '216-Asp-|-Gly-217' bond. Overexpression promotes programmed cell death.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 6

EC: 0

>sp|P55212|CASP6_HUMAN Caspase-6 OS=Homo sapiens GN=CASP6 PE=1 SV=2

 Score =  124 bits (312), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 71/179 (39%), Positives = 98/179 (54%), Gaps = 13/179 (7%)

Query: 14  ADYYRMDHKHRGLALIFNHEHF-DSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEF 72
           A+ Y+MDH+ RG+ALIFNHE F     L  R GT AD +NL     +LGF VK ++D + 
Sbjct: 34  AEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFNDLKA 93

Query: 73  KVIQNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAG 132
           + +   I E +   + DADCFV   L+HGE   ++A D   + + L   F  D C +L G
Sbjct: 94  EELLLKIHEVSTVSHADADCFVCVFLSHGEGNHIYAYDAKIEIQTLTGLFKGDKCHSLVG 153

Query: 133 KPKLFFIQACQGDKLDAGVTIRTQVDGH------------PSNTYSIPLHADFLMAYST 179
           KPK+F IQAC+G++ D  V     VD               ++ Y++P  ADFLM YS 
Sbjct: 154 KPKIFIIQACRGNQHDVPVIPLDVVDNQTEKLDTNITEVDAASVYTLPAGADFLMCYSV 212

Involved in the activation cascade of caspases responsible for apoptosis execution. Cleaves poly(ADP-ribose) polymerase in vitro, as well as lamins. Overexpression promotes programmed cell death.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 5

EC: 9

>sp|Q3T0P5|CASP6_BOVIN Caspase-6 OS=Bos taurus GN=CASP6 PE=2 SV=1

 Score =  124 bits (311), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 73/178 (41%), Positives = 97/178 (54%), Gaps = 17/178 (9%)

Query: 17  YRMDHKHRGLALIFNHEHF-DSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVI 75
           Y+MDHK RG+ALIFNHE F     L +R GT AD +NL     +LGF VK + D   + +
Sbjct: 37  YKMDHKRRGIALIFNHERFFWHLTLPNRPGTSADRDNLRRRFSDLGFEVKCFDDLRAEEL 96

Query: 76  QNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAGKPK 135
              I EA+   + DADCF+   L+HGE   ++A D   + + L   F  D C +L GKPK
Sbjct: 97  LLKIHEASTASHVDADCFLCVFLSHGEGNHIYAYDAKIEIQTLTGLFKGDKCQSLVGKPK 156

Query: 136 LFFIQACQGDKLDAGVTI--------------RTQVDGHPSNTYSIPLHADFLMAYST 179
           +F IQAC+G + D  V                 TQVD   ++ Y++P  ADFLM YS 
Sbjct: 157 IFIIQACRGSQHDVPVIPLDVVDHRTDTPDANLTQVDA--ASVYTLPAGADFLMCYSV 212

Involved in the activation cascade of caspases responsible for apoptosis execution. Cleaves poly(ADP-ribose) polymerase in vitro, as well as lamins. Overexpression promotes programmed cell death.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 5

EC: 9

>sp|O35397|CASP6_RAT Caspase-6 OS=Rattus norvegicus GN=Casp6 PE=2 SV=2

 Score =  122 bits (306), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 75/184 (40%), Positives = 97/184 (52%), Gaps = 23/184 (12%)

Query: 14  ADYYRMDHKHRGLALIFNHEHF-DSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEF 72
           A+ Y+MDHK RG ALIFNHE F     L  R GT AD +N       LGF VK ++D   
Sbjct: 17  AEQYKMDHKRRGTALIFNHERFFWHLALPERRGTNADRDNPTRRFSELGFEVKCFNDLRA 76

Query: 73  KVIQNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAG 132
           + +   I E +   + DADCF+   L+HGE   ++A D   + + L   F  D C +L G
Sbjct: 77  EELLLKIHEVSTSSHVDADCFLCVFLSHGEGNHIYAYDAKIEIQTLTGLFKGDKCQSLVG 136

Query: 133 KPKLFFIQACQG-----------------DKLDAGVTIRTQVDGHPSNTYSIPLHADFLM 175
           KPK+F IQAC+G                 DKLD  V   TQVD   ++ Y++P  ADFLM
Sbjct: 137 KPKIFIIQACRGSQHDVPLVPLDVVDHQTDKLDDNV---TQVDA--ASVYTLPAGADFLM 191

Query: 176 AYST 179
            YS 
Sbjct: 192 CYSV 195

Involved in the activation cascade of caspases responsible for apoptosis execution. Cleaves poly(ADP-ribose) polymerase in vitro, as well as lamins. Overexpression promotes programmed cell death.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 5

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	455
2493535	299	RecName: Full=Caspase-1; Contains: RecNa	0.386	0.588	0.593	4e-55
42543031	272	Chain A, Crystal Structure Of Caspase-1	0.386	0.647	0.593	5e-55
27464915	299	effector caspase [Spodoptera littoralis]	0.386	0.588	0.587	8e-55
409104072	296	caspase-1 [Spodoptera litura]	0.386	0.594	0.587	9e-55
193690583	312	PREDICTED: caspase-1-like isoform 1 [Acy	0.375	0.548	0.614	1e-54
328703636	326	PREDICTED: caspase-1-like isoform 2 [Acy	0.375	0.524	0.614	1e-54
159794911	310	Chain C, Structure Of Pro-Sf-Caspase-1 g	0.386	0.567	0.587	4e-54
339830892	279	caspase-1 [Heliothis virescens]	0.386	0.630	0.576	5e-53
387773643	295	caspase-1 [Chilo suppressalis]	0.393	0.606	0.563	6e-53
195113513	345	GI22043 [Drosophila mojavensis] gi|19391	0.386	0.510	0.586	9e-53

>gi|2493535|sp|P89116.1|CASP1_SPOFR RecName: Full=Caspase-1; Contains: RecName: Full=Caspase-1 subunit p19/18; Contains: RecName: Full=Caspase-1 subunit p12; Flags: Precursor gi|1814279|gb|AAC47442.1| caspase-1 [Spodoptera frugiperda]

 Score =  222 bits (565), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 105/177 (59%), Positives = 133/177 (75%), Gaps = 1/177 (0%)

Query: 5   VAKSTVEKDADYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVV 64
           VA+  V+++A YY M+HKHRG+A+IFNHEHFD   LKSR GT  D +NL   L  LGF V
Sbjct: 41  VARMPVDRNAPYYNMNHKHRGMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGFKV 100

Query: 65  KPYHDPEFKVIQNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTA 124
             + + + + I   I + AE D++DADC ++AVLTHGE G+L+AKD  YKP NLW  FTA
Sbjct: 101 TVFPNLKSEEINKFIQQTAEMDHSDADCLLVAVLTHGELGMLYAKDTHYKPDNLWYYFTA 160

Query: 125 DNCLTLAGKPKLFFIQACQGDKLDAGVTI-RTQVDGHPSNTYSIPLHADFLMAYSTI 180
           D C TLAGKPKLFFIQACQGD+LD G+T+ RT+ DG PS +Y IP+HADFL+A+ST+
Sbjct: 161 DKCPTLAGKPKLFFIQACQGDRLDGGITLSRTETDGSPSTSYRIPVHADFLIAFSTV 217

Source: Spodoptera frugiperda

Species: Spodoptera frugiperda

Genus: Spodoptera

Family: Noctuidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|42543031|pdb|1M72|A Chain A, Crystal Structure Of Caspase-1 From Spodoptera Frugiperda gi|42543033|pdb|1M72|B Chain B, Crystal Structure Of Caspase-1 From Spodoptera Frugiperda gi|42543035|pdb|1M72|C Chain C, Crystal Structure Of Caspase-1 From Spodoptera Frugiperda

 Score =  221 bits (564), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 105/177 (59%), Positives = 133/177 (75%), Gaps = 1/177 (0%)

Query: 5   VAKSTVEKDADYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVV 64
           VA+  V+++A YY M+HKHRG+A+IFNHEHFD   LKSR GT  D +NL   L  LGF V
Sbjct: 13  VARMPVDRNAPYYNMNHKHRGMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGFKV 72

Query: 65  KPYHDPEFKVIQNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTA 124
             + + + + I   I + AE D++DADC ++AVLTHGE G+L+AKD  YKP NLW  FTA
Sbjct: 73  TVFPNLKSEEINKFIQQTAEMDHSDADCLLVAVLTHGELGMLYAKDTHYKPDNLWYYFTA 132

Query: 125 DNCLTLAGKPKLFFIQACQGDKLDAGVTI-RTQVDGHPSNTYSIPLHADFLMAYSTI 180
           D C TLAGKPKLFFIQACQGD+LD G+T+ RT+ DG PS +Y IP+HADFL+A+ST+
Sbjct: 133 DKCPTLAGKPKLFFIQACQGDRLDGGITLSRTETDGSPSTSYRIPVHADFLIAFSTV 189

Source: Spodoptera frugiperda

Species: Spodoptera frugiperda

Genus: Spodoptera

Family: Noctuidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|27464915|gb|AAO16241.1| effector caspase [Spodoptera littoralis] gi|375280375|gb|AFA43940.1| caspase-1 [Spodoptera litura]

 Score =  221 bits (562), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 104/177 (58%), Positives = 134/177 (75%), Gaps = 1/177 (0%)

Query: 5   VAKSTVEKDADYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVV 64
           +A+  V+++A YY M+HKHRG+A+IFNHEHFD   LKSR GT  D +NL   L  LGF V
Sbjct: 41  IARMPVDRNAPYYNMNHKHRGMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKGLGFKV 100

Query: 65  KPYHDPEFKVIQNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTA 124
             + + + + I   + + A+ D++DADC ++AVLTHGE G+L+AKD  YKP+NLW  FTA
Sbjct: 101 TVFTNLKSEEINKYVQQTADMDHSDADCLLVAVLTHGELGMLYAKDTHYKPENLWYYFTA 160

Query: 125 DNCLTLAGKPKLFFIQACQGDKLDAGVTI-RTQVDGHPSNTYSIPLHADFLMAYSTI 180
           D C TLAGKPKLFFIQACQGDKLD GVT+ RT+ DG PS +Y IP+HADFL+A+ST+
Sbjct: 161 DKCPTLAGKPKLFFIQACQGDKLDGGVTLSRTETDGSPSASYRIPVHADFLIAFSTV 217

Source: Spodoptera littoralis

Species: Spodoptera littoralis

Genus: Spodoptera

Family: Noctuidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|409104072|dbj|BAM62940.1| caspase-1 [Spodoptera litura]

 Score =  221 bits (562), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 104/177 (58%), Positives = 134/177 (75%), Gaps = 1/177 (0%)

Query: 5   VAKSTVEKDADYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVV 64
           +A+  V+++A YY M+HKHRG+A+IFNHEHFD   LKSR GT  D +NL   L  LGF V
Sbjct: 41  IARMPVDRNAPYYNMNHKHRGMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKGLGFKV 100

Query: 65  KPYHDPEFKVIQNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTA 124
             + + + + I   + + A+ D++DADC ++AVLTHGE G+L+AKD  YKP+NLW  FTA
Sbjct: 101 TVFTNLKSEEINKYVQQTADMDHSDADCLLVAVLTHGELGMLYAKDTHYKPENLWYYFTA 160

Query: 125 DNCLTLAGKPKLFFIQACQGDKLDAGVTI-RTQVDGHPSNTYSIPLHADFLMAYSTI 180
           D C TLAGKPKLFFIQACQGDKLD GVT+ RT+ DG PS +Y IP+HADFL+A+ST+
Sbjct: 161 DKCPTLAGKPKLFFIQACQGDKLDGGVTLSRTETDGSPSASYRIPVHADFLIAFSTV 217

Source: Spodoptera litura

Species: Spodoptera litura

Genus: Spodoptera

Family: Noctuidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193690583|ref|XP_001944447.1| PREDICTED: caspase-1-like isoform 1 [Acyrthosiphon pisum]

 Score =  220 bits (560), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 107/174 (61%), Positives = 132/174 (75%), Gaps = 3/174 (1%)

Query: 8   STVEKDADYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPY 67
           S+ +KDA YY M HKHRG A+IFNHE+F    LKSRAGTG D  NL  +L NLGF V PY
Sbjct: 61  SSTDKDAWYYNMHHKHRGKAIIFNHENFQVRDLKSRAGTGLDCINLEVSLKNLGFDVTPY 120

Query: 68  HDPEFKVIQNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPK-NLWSKFTADN 126
            D     +   +D  A++DYT+ DC +MAVL+HGE GI++AKD  YKP+ NLW +FT D 
Sbjct: 121 VDLTLDELDKKLDYWAKEDYTNYDCLLMAVLSHGEQGIIYAKDGAYKPEDNLWGRFTGDK 180

Query: 127 CLTLAGKPKLFFIQACQGDKLDAGVTIRTQVDGHPSNTYSIPLHADFLMAYSTI 180
           C+TLAGKPKLFFIQACQGD+LD GV +RTQVDG  S+++ IP++ADFL+AYSTI
Sbjct: 181 CITLAGKPKLFFIQACQGDRLDGGVQLRTQVDG--SSSFKIPVYADFLIAYSTI 232

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328703636|ref|XP_003242259.1| PREDICTED: caspase-1-like isoform 2 [Acyrthosiphon pisum]

 Score =  220 bits (560), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 107/174 (61%), Positives = 132/174 (75%), Gaps = 3/174 (1%)

Query: 8   STVEKDADYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPY 67
           S+ +KDA YY M HKHRG A+IFNHE+F    LKSRAGTG D  NL  +L NLGF V PY
Sbjct: 75  SSTDKDAWYYNMHHKHRGKAIIFNHENFQVRDLKSRAGTGLDCINLEVSLKNLGFDVTPY 134

Query: 68  HDPEFKVIQNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPK-NLWSKFTADN 126
            D     +   +D  A++DYT+ DC +MAVL+HGE GI++AKD  YKP+ NLW +FT D 
Sbjct: 135 VDLTLDELDKKLDYWAKEDYTNYDCLLMAVLSHGEQGIIYAKDGAYKPEDNLWGRFTGDK 194

Query: 127 CLTLAGKPKLFFIQACQGDKLDAGVTIRTQVDGHPSNTYSIPLHADFLMAYSTI 180
           C+TLAGKPKLFFIQACQGD+LD GV +RTQVDG  S+++ IP++ADFL+AYSTI
Sbjct: 195 CITLAGKPKLFFIQACQGDRLDGGVQLRTQVDG--SSSFKIPVYADFLIAYSTI 246

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|159794911|pdb|2NN3|C Chain C, Structure Of Pro-Sf-Caspase-1 gi|159794912|pdb|2NN3|D Chain D, Structure Of Pro-Sf-Caspase-1

 Score =  218 bits (556), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 104/177 (58%), Positives = 132/177 (74%), Gaps = 1/177 (0%)

Query: 5   VAKSTVEKDADYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVV 64
           VA+  V+++A YY M+HKHRG+A+IFNHEHFD   LKSR GT  D +NL   L  LGF V
Sbjct: 41  VARMPVDRNAPYYNMNHKHRGMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGFKV 100

Query: 65  KPYHDPEFKVIQNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTA 124
             + + + + I   I + AE D++DADC ++AVLT GE G+L+AKD  YKP NLW  FTA
Sbjct: 101 TVFPNLKSEEINKFIQQTAEMDHSDADCLLVAVLTAGELGMLYAKDTHYKPDNLWYYFTA 160

Query: 125 DNCLTLAGKPKLFFIQACQGDKLDAGVTI-RTQVDGHPSNTYSIPLHADFLMAYSTI 180
           D C TLAGKPKLFFIQACQGD+LD G+T+ RT+ DG PS +Y IP+HADFL+A+ST+
Sbjct: 161 DKCPTLAGKPKLFFIQACQGDRLDGGITLSRTETDGSPSTSYRIPVHADFLIAFSTV 217

Source: Spodoptera frugiperda

Species: Spodoptera frugiperda

Genus: Spodoptera

Family: Noctuidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|339830892|gb|AEK20807.1| caspase-1 [Heliothis virescens]

 Score =  215 bits (547), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 102/177 (57%), Positives = 130/177 (73%), Gaps = 1/177 (0%)

Query: 5   VAKSTVEKDADYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVV 64
           +A+  V+++A YY M+HK+RG+ALIFNHEHFD   LKSR GT  D +NL+  L  LGF V
Sbjct: 31  IARMPVDRNAPYYNMNHKYRGIALIFNHEHFDIHSLKSRTGTNVDSDNLFKVLKGLGFRV 90

Query: 65  KPYHDPEFKVIQNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTA 124
               + + + +   I E A+ D+TD DC V+AVLTHGE G+L+AKD  YKP+NLW  FT 
Sbjct: 91  TVLTNSKSEEVMKYIQEVADMDHTDFDCLVIAVLTHGELGMLYAKDTHYKPENLWYYFTG 150

Query: 125 DNCLTLAGKPKLFFIQACQGDKLDAGVTI-RTQVDGHPSNTYSIPLHADFLMAYSTI 180
           D C TLAGKPKLFFIQACQGDKLD G+T+ RT+ DG  S +Y IP+HADFL+ +ST+
Sbjct: 151 DKCPTLAGKPKLFFIQACQGDKLDGGITLSRTETDGSSSASYKIPVHADFLIVFSTV 207

Source: Heliothis virescens

Species: Heliothis virescens

Genus: Heliothis

Family: Noctuidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|387773643|gb|AFJ97219.1| caspase-1 [Chilo suppressalis]

 Score =  214 bits (546), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 102/181 (56%), Positives = 131/181 (72%), Gaps = 2/181 (1%)

Query: 2   KGPVAKSTVEKDADYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLG 61
           K   AK  V+++A YY M+HK+RG+ALIFNHEHFD   LKSR GT  D +NL   L  LG
Sbjct: 36  KNRYAKMPVDRNAPYYNMNHKNRGMALIFNHEHFDIHSLKSRTGTNVDSDNLSKVLRGLG 95

Query: 62  FVVKPYHDPEFKVIQNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSK 121
           F V  +H+ + + I   I + A+ D++D+DC ++AVLTHGE G+L+AKD  YKP NLW  
Sbjct: 96  FRVTVFHNLKSEEINKYIQQTADMDHSDSDCLLIAVLTHGEMGMLYAKDTHYKPDNLWYY 155

Query: 122 FTADNCLTLAGKPKLFFIQACQGDKLDAGVTI--RTQVDGHPSNTYSIPLHADFLMAYST 179
           FTAD C +LAGKPK+FFIQACQGDKLD G+T+  RT+ DG  S  Y IP+HADFL+ +ST
Sbjct: 156 FTADKCPSLAGKPKMFFIQACQGDKLDGGITLINRTETDGSSSTQYRIPIHADFLIVFST 215

Query: 180 I 180
           +
Sbjct: 216 V 216

Source: Chilo suppressalis

Species: Chilo suppressalis

Genus: Chilo

Family: Crambidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195113513|ref|XP_002001312.1| GI22043 [Drosophila mojavensis] gi|193917906|gb|EDW16773.1| GI22043 [Drosophila mojavensis]

 Score =  214 bits (544), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 105/179 (58%), Positives = 128/179 (71%), Gaps = 3/179 (1%)

Query: 5   VAKSTVEKDADYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVV 64
           VAK   E+ A  Y M HK+RG+A+IFNHEHFD P LKSRAGT  D ENL   L  L F V
Sbjct: 80  VAKMVTERHAAEYNMRHKNRGMAIIFNHEHFDVPTLKSRAGTNVDCENLSRVLKQLDFDV 139

Query: 65  KPYHDPEFKVIQNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTA 124
             Y D  ++ I + I  AA QD+T  DC ++A+L+HGE G ++AKD  YK  N+WS FTA
Sbjct: 140 SVYKDYRYQEIMSTIKYAASQDHTHNDCILVAILSHGEMGYIYAKDTQYKLDNIWSHFTA 199

Query: 125 DNCLTLAGKPKLFFIQACQGDKLDAGVTI---RTQVDGHPSNTYSIPLHADFLMAYSTI 180
           ++C TLAGKPKLFFIQACQGD+LD GVT+   RT+ DG  S +Y IP+HADFL+AYSTI
Sbjct: 200 NHCPTLAGKPKLFFIQACQGDRLDTGVTMQRGRTETDGDSSMSYKIPIHADFLIAYSTI 258

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	455
FB|FBgn0019972	339	Ice "Ice" [Drosophila melanoga	0.386	0.519	0.564	2.2e-50
FB|FBgn0010501	323	Dcp-1 "Death caspase-1" [Droso	0.386	0.544	0.553	2.5e-49
ZFIN|ZDB-GENE-041010-48	569	casp6l1 "caspase 6, apoptosis-	0.740	0.592	0.334	1e-36
UNIPROTKB|F1NEL6	304	CASP6 "Uncharacterized protein	0.353	0.529	0.422	5.4e-31
UNIPROTKB|F1NV61	271	CASP7 "Uncharacterized protein	0.351	0.590	0.402	3.4e-29
ZFIN|ZDB-GENE-030825-4	298	casp6 "caspase 6, apoptosis-re	0.356	0.543	0.432	7.1e-29
RGD|620944	303	Casp7 "caspase 7" [Rattus norv	0.378	0.567	0.394	1.5e-28
UNIPROTKB|G3IL63	303	I79_024625 "Caspase-7" [Cricet	0.382	0.574	0.393	1.9e-28
UNIPROTKB|O93417	283	CASP3 "Caspase-3" [Gallus gall	0.382	0.614	0.394	3.9e-28
MGI|MGI:109383	303	Casp7 "caspase 7" [Mus musculu	0.386	0.580	0.377	3.9e-28

FB|FBgn0019972 Ice "Ice" [Drosophila melanogaster (taxid:7227)]

 Score = 524 (189.5 bits), Expect = 2.2e-50, P = 2.2e-50
 Identities = 101/179 (56%), Positives = 130/179 (72%)

Query:     5 VAKSTVEKDADYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVV 64
             VAK   ++ A  Y M HK+RG+ALIFNHEHF+ P LKSRAGT  D ENL   L  L F V
Sbjct:    74 VAKMVTDRHAAEYNMRHKNRGMALIFNHEHFEVPTLKSRAGTNVDCENLTRVLKQLDFEV 133

Query:    65 KPYHDPEFKVIQNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTA 124
               Y D  +K I   I+ AA Q+++D+DC ++A+L+HGE G ++AKD  YK  N+WS FTA
Sbjct:   134 TVYKDCRYKDILRTIEYAASQNHSDSDCILVAILSHGEMGYIYAKDTQYKLDNIWSFFTA 193

Query:   125 DNCLTLAGKPKLFFIQACQGDKLDAGVTIR---TQVDGHPSNTYSIPLHADFLMAYSTI 180
             ++C +LAGKPKLFFIQACQGD+LD GVT++   T+ DG  S +Y IP+HADFL+AYST+
Sbjct:   194 NHCPSLAGKPKLFFIQACQGDRLDGGVTMQRSQTETDGDSSMSYKIPVHADFLIAYSTV 252

GO:0004197 "cysteine-type endopeptidase activity" evidence=ISS;IDA;TAS

GO:0006915 "apoptotic process" evidence=TAS

GO:0046668 "regulation of retinal cell programmed cell death" evidence=NAS

GO:0006508 "proteolysis" evidence=IEA;TAS

GO:0012501 "programmed cell death" evidence=IDA;IMP

GO:0048515 "spermatid differentiation" evidence=IMP

GO:0010165 "response to X-ray" evidence=IMP

GO:0035070 "salivary gland histolysis" evidence=IMP

GO:0046672 "positive regulation of compound eye retinal cell programmed cell death" evidence=IMP

GO:0010623 "developmental programmed cell death" evidence=IMP

GO:0045476 "nurse cell apoptotic process" evidence=IGI

GO:0035103 "sterol regulatory element binding protein cleavage" evidence=IDA

GO:0016322 "neuron remodeling" evidence=IMP

FB|FBgn0010501 Dcp-1 "Death caspase-1" [Drosophila melanogaster (taxid:7227)]

 Score = 514 (186.0 bits), Expect = 2.5e-49, P = 2.5e-49
 Identities = 99/179 (55%), Positives = 122/179 (68%)

Query:     5 VAKSTVEKDADYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVV 64
             VA+  VE+ A  Y M HKHRG+ALIFNHE FD P LKSR GT  D + L     NLGF V
Sbjct:    59 VARMPVERYASEYNMSHKHRGVALIFNHEFFDIPSLKSRTGTNVDAQELKKAFENLGFAV 118

Query:    65 KPYHDPEFKVIQNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTA 124
               + D + + I   + +AAE D+TD DC  +A+L+HGE G L+AKD  YK  N+W  FTA
Sbjct:   119 SVHKDCKLRDILKHVGKAAELDHTDNDCLAVAILSHGEHGYLYAKDTQYKLDNIWHYFTA 178

Query:   125 DNCLTLAGKPKLFFIQACQGDKLDAGVTIR---TQVDGHPSNTYSIPLHADFLMAYSTI 180
               C +LAGKPKLFFIQACQGD+LD G+T+    T+ DG  S +Y IP+HADFL +YSTI
Sbjct:   179 TFCPSLAGKPKLFFIQACQGDRLDGGITLEKGVTETDGESSTSYKIPIHADFLFSYSTI 237

GO:0006915 "apoptotic process" evidence=IMP;IDA;TAS

GO:0004197 "cysteine-type endopeptidase activity" evidence=ISS;NAS;IDA;TAS

GO:0009790 "embryo development" evidence=IMP

GO:0007300 "ovarian nurse cell to oocyte transport" evidence=IMP;TAS

GO:0030036 "actin cytoskeleton organization" evidence=IMP

GO:0006922 "cleavage of lamin involved in execution phase of apoptosis" evidence=IMP

GO:0007275 "multicellular organismal development" evidence=TAS

GO:0045476 "nurse cell apoptotic process" evidence=IGI;TAS

GO:0007015 "actin filament organization" evidence=TAS

GO:0007303 "cytoplasmic transport, nurse cell to oocyte" evidence=TAS

GO:0048102 "autophagic cell death" evidence=IEP

GO:0035071 "salivary gland cell autophagic cell death" evidence=IEP

GO:0006508 "proteolysis" evidence=TAS

GO:0010623 "developmental programmed cell death" evidence=IMP

GO:0016322 "neuron remodeling" evidence=IMP

GO:0012501 "programmed cell death" evidence=IDA

GO:1900074 "negative regulation of neuromuscular synaptic transmission" evidence=IMP

ZFIN|ZDB-GENE-041010-48 casp6l1 "caspase 6, apoptosis-related cysteine peptidase, like 1" [Danio rerio (taxid:7955)]

 Score = 395 (144.1 bits), Expect = 1.0e-36, P = 1.0e-36
 Identities = 123/368 (33%), Positives = 174/368 (47%)

Query:    17 YRMDHKHRGLALIFNHEHFD-SPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVI 75
             Y M+HK RG+ALIFNHE+F     L  R+GT AD ENL      L F VK + D +   +
Sbjct:    46 YDMNHKRRGMALIFNHENFFWKLGLGYRSGTNADKENLIRRFRELNFEVKAFDDYKRHEV 105

Query:    76 QNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAGKPK 135
              + I EAA  D+ DADCFV   L+HGE+G ++A D   +   +   F  D C +L GKPK
Sbjct:   106 LSKITEAAAADHVDADCFVCVFLSHGENGHVYANDGQIEIPEITDLFKGDKCRSLVGKPK 165

Query:   136 LFFIQACQGDKLDAGVTIRTQVDGHPSNT--------YSIPLHADFLMAYSTI----SDS 183
             +F  QAC+GDK D  VT    VD   +N         Y++P  ADF+M YS      S  
Sbjct:   166 IFIWQACRGDKHDDPVTPMDVVDSQVTNDMVVDAGVLYTLPAGADFIMCYSVAEGYYSHR 225

Query:   184 PMFGQRFGLKDKCSKVVSKTYQVMSSNVDTSNGECQTDGHESHTNGSAVGKDEGDVLGFK 243
                   + ++D C   + + Y    S ++ +  E  T  +   +  S +   +   +G K
Sbjct:   226 ETVNGSWYIQDLCE--ILRRY---GSELEFA--EILTLVNRKVSLRSVLNCKDRSAVGKK 278

Query:   244 FQTDGHESHTNGSAVGKDEGDVLGFNFGRTRMKGPVAKSTVEKDADYYRMDHKHRGLALI 303
                  H + +N  A      +    N   T   G +   +V  + +Y  M H  RG+ALI
Sbjct:   279 QTPPLHPNKSNAMATNTRSHE--SENI--TETDGRI--QSVYPNQEY-DMRHARRGMALI 331

Query:   304 FNHEHFD-SPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVIQNAIDEGPVAKST 362
             FN + FD    LK+R GT  D ++L +    L F VK Y+D     +   I E   A   
Sbjct:   332 FNQKQFDWKLGLKTRNGTDKDRDDLVSRFQELNFEVKAYNDYSRDDVLLKIQEASAADHV 391

Query:   363 VEKDADYY 370
                DAD +
Sbjct:   392 ---DADCF 396

GO:0004197 "cysteine-type endopeptidase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

UNIPROTKB|F1NEL6 CASP6 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 341 (125.1 bits), Expect = 5.4e-31, P = 5.4e-31
 Identities = 74/175 (42%), Positives = 105/175 (60%)

Query:    17 YRMDHKHRGLALIFNHEHFDSPHLK--SRAGTGADFENLYTTLVNLGFVVKPYHDPEFKV 74
             Y+M+H+ RG+ALIFNHEHF   HL+   R GT AD  NL  +L +LGF V+ + D + + 
Sbjct:    49 YKMNHQRRGVALIFNHEHFFW-HLRLPDRRGTLADRNNLKRSLTDLGFEVRIFDDLKAED 107

Query:    75 IQNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAGKP 134
             +   + EA+  DY++ADCFV   L+HGE+  ++A D   K + + + F  D C +L GKP
Sbjct:   108 VLKKVFEASRDDYSNADCFVCVFLSHGENDHVYAYDAQIKIETITNMFRGDKCQSLVGKP 167

Query:   135 KLFFIQACQGDKLDAGVTIRTQVDGHPSNT-----------YSIPLHADFLMAYS 178
             K+F IQAC+GDK D  V ++  VD     T           Y++P  ADF+M YS
Sbjct:   168 KIFIIQACRGDKHDDPVLVQDSVDSKDETTVNQTEVDAAGVYTLPAGADFIMCYS 222

GO:0004197 "cysteine-type endopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|F1NV61 CASP7 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
 Identities = 70/174 (40%), Positives = 104/174 (59%)

Query:    17 YRMDHKHRGLALIFNHEHF-DSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVI 75
             Y M++K  G  +I N+++F D   + +R GT  D  +L  +  +LGF V  Y+D   + +
Sbjct:    27 YNMNYKKVGKCIIINNKNFEDKTGMGTRNGTDKDAGDLSKSFRSLGFDVYTYNDRSCEDM 86

Query:    76 QNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAGKPK 135
             Q  + +AAE++++DA CF   +L+HGE+G+++  D P   K+L + F  D C TL GKPK
Sbjct:    87 QTLLKQAAEENHSDAACFACILLSHGEEGLIYGTDGPMAIKHLTTLFRGDKCKTLIGKPK 146

Query:   136 LFFIQACQGDKLDAGVTIRTQVDGHPSNT---------YSIPLHADFLMAYSTI 180
             LFFIQAC+G + D G+    Q D  P+N          Y IP+ ADFL AYST+
Sbjct:   147 LFFIQACRGSEFDEGI----QTDSGPANDTLETDANPRYKIPVEADFLFAYSTV 196

GO:0005737 "cytoplasm" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0001836 "release of cytochrome c from mitochondria" evidence=IEA

GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA

GO:0004197 "cysteine-type endopeptidase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IEA

GO:0007507 "heart development" evidence=IEA

GO:0009411 "response to UV" evidence=IEA

GO:0016485 "protein processing" evidence=IEA

GO:0043525 "positive regulation of neuron apoptotic process" evidence=IEA

ZFIN|ZDB-GENE-030825-4 casp6 "caspase 6, apoptosis-related cysteine peptidase" [Danio rerio (taxid:7955)]

 Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
 Identities = 74/171 (43%), Positives = 96/171 (56%)

Query:    17 YRMDHKHRGLALIFNHEHFD-SPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVI 75
             Y M+HK RG+ALIFNHE+F     L  R+GT AD ENL      L F VK + D +   +
Sbjct:    47 YDMNHKRRGMALIFNHENFFWKLGLGYRSGTNADKENLIRRFRELNFEVKAFDDYKRHEV 106

Query:    76 QNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAGKPK 135
              + I EAA  D+ DADC V   L+HGE+G ++A D   +   +   F  D C +L GKPK
Sbjct:   107 LSKITEAAAADHVDADCLVCVFLSHGENGHVYANDGQIEIPEITDLFKGDKCRSLVGKPK 166

Query:   136 LFFIQACQGDKLDAGVTIRTQVDGHPSNT--------YSIPLHADFLMAYS 178
             +F  QAC+GDK D  VT    VD   +N         Y++P  ADF+M YS
Sbjct:   167 IFIWQACRGDKHDDPVTPMDVVDSQVTNDMVVDAGVLYTLPAGADFIMCYS 217

GO:0004197 "cysteine-type endopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

RGD|620944 Casp7 "caspase 7" [Rattus norvegicus (taxid:10116)]

 Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
 Identities = 73/185 (39%), Positives = 109/185 (58%)

Query:     4 PVAKSTVEKDADY-YRMDHKHRGLALIFNHEHFD-SPHLKSRAGTGADFENLYTTLVNLG 61
             PV+ +T ++   Y YRMD +  G  +I N+++FD +  +  R GT  D E L+    +LG
Sbjct:    47 PVS-TTRDRVPTYLYRMDFEKMGKCIIINNKNFDKATGMDVRNGTDKDAEALFKCFRSLG 105

Query:    62 FVVKPYHDPEFKVIQNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSK 121
             F V  Y+D     +Q+ +  A+E+D++++ CF   +L+HGE+ +++ KD     K+L + 
Sbjct:   106 FEVTVYNDCSCAKMQDLLRRASEEDHSNSACFACVLLSHGEENLIYGKDGVTPIKDLTAH 165

Query:   122 FTADNCLTLAGKPKLFFIQACQGDKLDAGVTIRTQVDGHPSNT------YSIPLHADFLM 175
             F  D C TL  KPKLFFIQAC+G +LD G+    Q D  P N       Y IP+ ADFL 
Sbjct:   166 FRGDRCKTLLEKPKLFFIQACRGTELDDGI----QADSGPINDTDANPRYKIPVEADFLF 221

Query:   176 AYSTI 180
             AYST+
Sbjct:   222 AYSTV 226

GO:0001836 "release of cytochrome c from mitochondria" evidence=ISO

GO:0004190 "aspartic-type endopeptidase activity" evidence=ISO

GO:0004197 "cysteine-type endopeptidase activity" evidence=IEA;ISO

GO:0005634 "nucleus" evidence=ISO

GO:0005829 "cytosol" evidence=IDA

GO:0006508 "proteolysis" evidence=ISO;IDA

GO:0006915 "apoptotic process" evidence=TAS

GO:0006917 "induction of apoptosis" evidence=ISO

GO:0007507 "heart development" evidence=ISO

GO:0007568 "aging" evidence=IEP

GO:0008233 "peptidase activity" evidence=ISO

GO:0008234 "cysteine-type peptidase activity" evidence=IDA

GO:0009411 "response to UV" evidence=ISO

GO:0016485 "protein processing" evidence=ISO

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

GO:0043525 "positive regulation of neuron apoptotic process" evidence=ISO

UNIPROTKB|G3IL63 I79_024625 "Caspase-7" [Cricetulus griseus (taxid:10029)]

 Score = 317 (116.6 bits), Expect = 1.9e-28, P = 1.9e-28
 Identities = 72/183 (39%), Positives = 110/183 (60%)

Query:     4 PVAKSTVEKDADY-YRMDHKHRGLALIFNHEHFDS-PHLKSRAGTGADFENLYTTLVNLG 61
             PV K+T ++   + YRMD +  G  +I N+++FD    +  R GT  D E L+    +LG
Sbjct:    47 PV-KTTRDRVPTHLYRMDFEKMGKCIIINNKNFDKVTGMDVRNGTDKDAEALFKCFRSLG 105

Query:    62 FVVKPYHDPEFKVIQNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSK 121
             F V  Y+D     +Q+ + +A+E+D++++ CF   +L+HGE+ +++ KD     K+L + 
Sbjct:   106 FDVVVYNDCSCAKMQDLLRKASEEDHSNSACFACVLLSHGEENLIYGKDGVTPIKDLTAH 165

Query:   122 FTADNCLTLAGKPKLFFIQACQGDKLDAGVTIRT----QVDGHPSNTYSIPLHADFLMAY 177
             F  D C TL  KPKLFFIQAC+G +LD GV   +    + D +P   Y IP+ ADFL AY
Sbjct:   166 FRGDRCKTLLEKPKLFFIQACRGTELDDGVQADSGPISETDANPR--YKIPVEADFLFAY 223

Query:   178 STI 180
             ST+
Sbjct:   224 STV 226

GO:0005515 "protein binding" evidence=IPI

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0031966 "mitochondrial membrane" evidence=TAS

UNIPROTKB|O93417 CASP3 "Caspase-3" [Gallus gallus (taxid:9031)]

 Score = 314 (115.6 bits), Expect = 3.9e-28, P = 3.9e-28
 Identities = 73/185 (39%), Positives = 107/185 (57%)

Query:     1 MKGPVAKST---VEKDADYYRMDHKHRGLALIFNHEHFD-SPHLKSRAGTGADFENLYTT 56
             M  P +KS    +  D D YRMD+   G+ +I N+++F     L SR+GT AD  ++   
Sbjct:    27 MNLPASKSVDSGILPD-DSYRMDYPEIGVCVIINNKNFHRDTGLSSRSGTDADAASVREV 85

Query:    57 LVNLGFVVKPYHDPEFKVIQNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPK 116
              + LG+ VK  +D   + I   +   +E+D++    FV  +L+HG++G+ +  D P + K
Sbjct:    86 FMKLGYKVKLNNDLSSRDIFKLLKNVSEEDHSKRSSFVCVLLSHGDEGLFYGTDGPLELK 145

Query:   117 NLWSKFTADNCLTLAGKPKLFFIQACQGDKLDAGVTIRTQVDGHPSNTY--SIPLHADFL 174
              L S F  D C +LAGKPKLFFIQAC+G +LD+G+    + D  P  T    IP+ ADFL
Sbjct:   146 VLTSLFRGDKCRSLAGKPKLFFIQACRGTELDSGI----EADSGPDETVCQKIPVEADFL 201

Query:   175 MAYST 179
              AYST
Sbjct:   202 YAYST 206

GO:0006508 "proteolysis" evidence=IEA

GO:0001782 "B cell homeostasis" evidence=IEA

GO:0001836 "release of cytochrome c from mitochondria" evidence=IEA

GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA

GO:0004197 "cysteine-type endopeptidase activity" evidence=IEA

GO:0004861 "cyclin-dependent protein serine/threonine kinase inhibitor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0006309 "apoptotic DNA fragmentation" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=IEA

GO:0007507 "heart development" evidence=IEA

GO:0007605 "sensory perception of sound" evidence=IEA

GO:0008625 "extrinsic apoptotic signaling pathway via death domain receptors" evidence=IEA

GO:0008631 "intrinsic apoptotic signaling pathway in response to oxidative stress" evidence=IEA

GO:0009411 "response to UV" evidence=IEA

GO:0009611 "response to wounding" evidence=IEA

GO:0016485 "protein processing" evidence=IEA

GO:0030216 "keratinocyte differentiation" evidence=IEA

GO:0030264 "nuclear fragmentation involved in apoptotic nuclear change" evidence=IEA

GO:0030889 "negative regulation of B cell proliferation" evidence=IEA

GO:0043029 "T cell homeostasis" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0043525 "positive regulation of neuron apoptotic process" evidence=IEA

GO:0045165 "cell fate commitment" evidence=IEA

GO:0045736 "negative regulation of cyclin-dependent protein serine/threonine kinase activity" evidence=IEA

GO:0046007 "negative regulation of activated T cell proliferation" evidence=IEA

GO:0051402 "neuron apoptotic process" evidence=IEA

GO:0071310 "cellular response to organic substance" evidence=IEA

MGI|MGI:109383 Casp7 "caspase 7" [Mus musculus (taxid:10090)]

 Score = 314 (115.6 bits), Expect = 3.9e-28, P = 3.9e-28
 Identities = 69/183 (37%), Positives = 105/183 (57%)

Query:     3 GPVAKSTVEKDADYYRMDHKHRGLALIFNHEHFD-SPHLKSRAGTGADFENLYTTLVNLG 61
             GPV           YRMD +  G  +I N+++FD +  +  R GT  D   L+    NLG
Sbjct:    46 GPVRTGRDRVPTYLYRMDFQKMGKCIIINNKNFDKATGMDVRNGTDKDAGALFKCFQNLG 105

Query:    62 FVVKPYHDPEFKVIQNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSK 121
             F V  ++D     +Q+ + +A+E+D++++ CF   +L+HGE+ +++ KD     K+L + 
Sbjct:   106 FEVTVHNDCSCAKMQDLLRKASEEDHSNSACFACVLLSHGEEDLIYGKDGVTPIKDLTAH 165

Query:   122 FTADNCLTLAGKPKLFFIQACQGDKLDAGVTIRT----QVDGHPSNTYSIPLHADFLMAY 177
             F  D C TL  KPKLFFIQAC+G +LD G+   +     +D +P N   IP+ ADFL AY
Sbjct:   166 FRGDRCKTLLEKPKLFFIQACRGTELDDGIQADSGPINDIDANPRN--KIPVEADFLFAY 223

Query:   178 STI 180
             ST+
Sbjct:   224 STV 226

GO:0001836 "release of cytochrome c from mitochondria" evidence=IGI

GO:0004190 "aspartic-type endopeptidase activity" evidence=IDA

GO:0004197 "cysteine-type endopeptidase activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=IEA

GO:0005829 "cytosol" evidence=ISO

GO:0006508 "proteolysis" evidence=ISO;RCA

GO:0006915 "apoptotic process" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IGI;RCA

GO:0007507 "heart development" evidence=IGI

GO:0008233 "peptidase activity" evidence=IDA;RCA

GO:0008234 "cysteine-type peptidase activity" evidence=ISO

GO:0009411 "response to UV" evidence=IGI

GO:0016485 "protein processing" evidence=IDA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0042981 "regulation of apoptotic process" evidence=RCA

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO

GO:0043525 "positive regulation of neuron apoptotic process" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O01382	ICE_DROME	3, ., 4, ., 2, 2, ., -	0.5642	0.3868	0.5191	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.22	0.691

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	455
cd00032	243	cd00032, CASc, Caspase, interleukin-1 beta convert	2e-59
smart00115	241	smart00115, CASc, Caspase, interleukin-1 beta conv	2e-57
pfam00656	228	pfam00656, Peptidase_C14, Caspase domain	1e-34
smart00115	241	smart00115, CASc, Caspase, interleukin-1 beta conv	1e-14
smart00115	241	smart00115, CASc, Caspase, interleukin-1 beta conv	2e-14
cd00032	243	cd00032, CASc, Caspase, interleukin-1 beta convert	4e-14
cd00032	243	cd00032, CASc, Caspase, interleukin-1 beta convert	4e-14
pfam00656	228	pfam00656, Peptidase_C14, Caspase domain	3e-05
pfam00656	228	pfam00656, Peptidase_C14, Caspase domain	3e-05

>gnl|CDD|237997 cd00032, CASc, Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis)

 Score =  194 bits (495), Expect = 2e-59
 Identities = 73/173 (42%), Positives = 101/173 (58%), Gaps = 10/173 (5%)

Query: 16  YYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVI 75
            Y+M+ K RGLALI N+E+FD   LK R GT  D ENL     +LG+ V+  ++   + I
Sbjct: 1   IYKMNSKRRGLALIINNENFD-KGLKDRDGTDVDAENLTKLFESLGYEVEVKNNLTAEEI 59

Query: 76  QNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKD-VPYKPKNLWSKFTADNCLTLAGKP 134
              + E A  D++D+D FV  +L+HGE+G ++  D        + S F  DNC +LAGKP
Sbjct: 60  LEELKEFASPDHSDSDSFVCVILSHGEEGGIYGTDGDVVPIDEITSLFNGDNCPSLAGKP 119

Query: 135 KLFFIQACQGDKLDAGV--------TIRTQVDGHPSNTYSIPLHADFLMAYST 179
           KLFFIQAC+GD+LD GV            + +       +IP+ ADFL+AYST
Sbjct: 120 KLFFIQACRGDELDLGVEVDSGADEPPDVETEAEDDAVQTIPVEADFLVAYST 172

Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologs. Length = 243

>gnl|CDD|214521 smart00115, CASc, Caspase, interleukin-1 beta converting enzyme (ICE) homologues

 Score =  189 bits (482), Expect = 2e-57
 Identities = 73/174 (41%), Positives = 101/174 (58%), Gaps = 9/174 (5%)

Query: 17  YRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVIQ 76
           Y+M+ K RGLALI N+E+F    L  R GT  D ENL     +LG+ V+  ++   + + 
Sbjct: 1   YKMNSKPRGLALIINNENFH--SLPRRNGTDVDAENLTELFQSLGYEVQVKNNLTAEEML 58

Query: 77  NAIDEAAE-QDYTDADCFVMAVLTHGEDGILHAKD-VPYKPKNLWSKFTADNCLTLAGKP 134
             + E A   +++D+D FV  +L+HGE+G ++  D  P     ++S F  DNC +LAGKP
Sbjct: 59  EELKEFAAMPEHSDSDSFVCVLLSHGEEGGIYGTDGDPLPLDEIFSLFNGDNCPSLAGKP 118

Query: 135 KLFFIQACQGDKLDAGVTIRTQVDGHPSN-----TYSIPLHADFLMAYSTISDS 183
           KLFFIQAC+GD+LD GV +   V    S       Y IP+ ADFL AYST    
Sbjct: 119 KLFFIQACRGDELDGGVPVEDSVADPESEGEDDAIYKIPVEADFLAAYSTTPGY 172

Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues. Length = 241

>gnl|CDD|216047 pfam00656, Peptidase_C14, Caspase domain

 Score =  128 bits (324), Expect = 1e-34
 Identities = 60/166 (36%), Positives = 75/166 (45%), Gaps = 16/166 (9%)

Query: 25  GLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVIQNAIDEAAE 84
           GLALI  + +F   H     G   D E L   L  LGF V+ + D   + I+ A+ E A 
Sbjct: 1   GLALIIGNNYF--GHAAPLRGCDNDAEALAKLLQRLGFEVEVFDDLTAEEIRRALREFA- 57

Query: 85  QDYTDADCFVMAVLTHGEDGILHAKD---VPYKPKNLWSKFTADNCLTLAGKPKLFFIQA 141
                 D FV+    HG  G ++  D   VP     L   F   NC +L GKPKLF I A
Sbjct: 58  ARADPGDSFVVVYSGHGVQGEVYGGDGYLVPVD--ALDDVFNGLNCPSLKGKPKLFIIDA 115

Query: 142 CQGDKLDAGV--------TIRTQVDGHPSNTYSIPLHADFLMAYST 179
           C+G  LD GV           +  D   +    IP  ADFL+AYST
Sbjct: 116 CRGGPLDDGVKSDSGSSGESESVDDSEAAGLSKIPAPADFLVAYST 161

Length = 228

>gnl|CDD|214521 smart00115, CASc, Caspase, interleukin-1 beta converting enzyme (ICE) homologues

 Score = 73.0 bits (180), Expect = 1e-14
 Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 4/78 (5%)

Query: 291 YRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVIQ 350
           Y+M+ K RGLALI N+E+F    L  R GT  D ENL     +LG+ V+  ++   + + 
Sbjct: 1   YKMNSKPRGLALIINNENFH--SLPRRNGTDVDAENLTELFQSLGYEVQVKNNLTAEEML 58

Query: 351 NAIDEGPVAKSTVEKDAD 368
             + E   A      D+D
Sbjct: 59  EELKE--FAAMPEHSDSD 74

Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues. Length = 241

>gnl|CDD|214521 smart00115, CASc, Caspase, interleukin-1 beta converting enzyme (ICE) homologues

 Score = 71.9 bits (177), Expect = 2e-14
 Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 2/65 (3%)

Query: 370 YRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVIQ 429
           Y+M+ K RGLALI N+E+F    L  R GT  D ENL     +LG+ V+  ++   + + 
Sbjct: 1   YKMNSKPRGLALIINNENFH--SLPRRNGTDVDAENLTELFQSLGYEVQVKNNLTAEEML 58

Query: 430 NAIDE 434
             + E
Sbjct: 59  EELKE 63

Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues. Length = 241

>gnl|CDD|237997 cd00032, CASc, Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis)

 Score = 71.5 bits (176), Expect = 4e-14
 Identities = 30/79 (37%), Positives = 42/79 (53%), Gaps = 4/79 (5%)

Query: 290 YYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVI 349
            Y+M+ K RGLALI N+E+FD   LK R GT  D ENL     +LG+ V+  ++   + I
Sbjct: 1   IYKMNSKRRGLALIINNENFD-KGLKDRDGTDVDAENLTKLFESLGYEVEVKNNLTAEEI 59

Query: 350 QNAIDEGPVAKSTVEKDAD 368
              + E     S    D+D
Sbjct: 60  LEELKE---FASPDHSDSD 75

Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologs. Length = 243

>gnl|CDD|237997 cd00032, CASc, Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis)

 Score = 71.5 bits (176), Expect = 4e-14
 Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 1/66 (1%)

Query: 369 YYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVI 428
            Y+M+ K RGLALI N+E+FD   LK R GT  D ENL     +LG+ V+  ++   + I
Sbjct: 1   IYKMNSKRRGLALIINNENFD-KGLKDRDGTDVDAENLTKLFESLGYEVEVKNNLTAEEI 59

Query: 429 QNAIDE 434
              + E
Sbjct: 60  LEELKE 65

Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologs. Length = 243

>gnl|CDD|216047 pfam00656, Peptidase_C14, Caspase domain

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 2/57 (3%)

Query: 299 GLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVIQNAIDE 355
           GLALI  + +F   H     G   D E L   L  LGF V+ + D   + I+ A+ E
Sbjct: 1   GLALIIGNNYF--GHAAPLRGCDNDAEALAKLLQRLGFEVEVFDDLTAEEIRRALRE 55

Length = 228

>gnl|CDD|216047 pfam00656, Peptidase_C14, Caspase domain

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 2/57 (3%)

Query: 378 GLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVIQNAIDE 434
           GLALI  + +F   H     G   D E L   L  LGF V+ + D   + I+ A+ E
Sbjct: 1   GLALIIGNNYF--GHAAPLRGCDNDAEALAKLLQRLGFEVEVFDDLTAEEIRRALRE 55

Length = 228

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	455
smart00115	241	CASc Caspase, interleukin-1 beta converting enzyme	100.0
cd00032	243	CASc Caspase, interleukin-1 beta converting enzyme	100.0
KOG3573|consensus	300		99.97
PF00656	248	Peptidase_C14: Caspase domain; InterPro: IPR011600	99.86
smart00115	241	CASc Caspase, interleukin-1 beta converting enzyme	99.75
cd00032	243	CASc Caspase, interleukin-1 beta converting enzyme	99.64
COG4249	380	Uncharacterized protein containing caspase domain	98.29
KOG3573|consensus	300		98.16
PF00656	248	Peptidase_C14: Caspase domain; InterPro: IPR011600	98.09
KOG1546|consensus	362		95.25
PF12770	287	CHAT: CHAT domain	94.41
PF01650	256	Peptidase_C13: Peptidase C13 family; InterPro: IPR	93.65
PF14538	154	Raptor_N: Raptor N-terminal CASPase like domain	91.21

>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues

Probab=100.00  E-value=2e-49  Score=386.42  Aligned_cols=211  Identities=36%  Similarity=0.573  Sum_probs=183.2

Q ss_pred             eeCCCCceeEEEEEeCCCCCCCCCCCCCChHHhHHHHHHHHHhCCcEEEEecCCCHHHHHHHHHHHHh-hcCCCCceEEE
Q psy15857         17 YRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVIQNAIDEAAE-QDYTDADCFVM   95 (455)
Q Consensus        17 Y~m~~~~~G~aLIInN~~F~~~~l~~R~Gs~~D~~~L~~~F~~LGF~V~~~~nlt~~em~~~l~~~s~-~d~~~~d~~vv   95 (455)
                      |+|+++|+|+||||||..|.  .+.+|.|+++|+++|+++|++|||+|+++.|+|..||++.|++|++ .+|..+||++|
T Consensus         1 Y~m~~~p~g~alII~n~~f~--~~~~r~g~~~D~~~l~~~f~~lgF~V~~~~dlt~~em~~~l~~~~~~~~~~~~d~~v~   78 (241)
T smart00115        1 YRMNSKPRGLALIINNENFH--SLPRRNGTDVDAENLTELFQSLGYEVHVKNNLTAEEMLEELKEFAERPEHSDSDSFVC   78 (241)
T ss_pred             CCCCCCCCcEEEEEECccCC--CCcCCCCcHHHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhccccCCCCEEEE
Confidence            99999999999999999998  5899999999999999999999999999999999999999999998 58999999999


Q ss_pred             EEecCCCCceeeeeCCc-cChhhhHHhhccccccccCCCceEEEEecccCCccCCCceeeecc-----CCCCCCCcCCCC
Q psy15857         96 AVLTHGEDGILHAKDVP-YKPKNLWSKFTADNCLTLAGKPKLFFIQACQGDKLDAGVTIRTQV-----DGHPSNTYSIPL  169 (455)
Q Consensus        96 vilSHG~~g~I~g~D~~-v~~~~I~~~F~~~~c~~L~gKPKlFfiQACRG~~~d~gv~~~~~~-----d~~~~~~~~iP~  169 (455)
                      ||||||.+|.|+++|+. |++++|++.|.+.+||+|++||||||||||||++.+.|+......     ........++|.
T Consensus        79 ~~~sHG~~~~l~~~D~~~v~l~~i~~~f~~~~c~~L~~kPKlffiqACRg~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~  158 (241)
T smart00115       79 VLLSHGEEGGIYGTDHSPLPLDEIFSLFNGDNCPSLAGKPKLFFIQACRGDELDGGVPVEDDVDDPPTEFEDDAIYKIPV  158 (241)
T ss_pred             EEcCCCCCCeEEEecCCEEEHHHHHHhccccCChhhcCCCcEEEEeCCCCCCCCCCeecccccccccccccccccccCCC
Confidence            99999999999999995 999999999999999999999999999999999999887642111     111234568899


Q ss_pred             CCCEEEEEccCCCCccccCc----hhHHHHHHHHhHh----HHHHhhhcccCCCCcccc----ccccccccC
Q psy15857        170 HADFLMAYSTISDSPMFGQR----FGLKDKCSKVVSK----TYQVMSSNVDTSNGECQT----DGHESHTNG  229 (455)
Q Consensus       170 ~aD~Li~yST~pG~vS~R~~----~fIq~Lc~~~~~~----~~~~m~~~~~~~~~e~~~----~~~~~~~~~  229 (455)
                      .+|+||+|||+|||+|||++    ||||+||+.|.+.    .+.-|..+|++.+.....    ..|.||..+
T Consensus       159 ~~D~li~ysT~pG~va~r~~~~gS~fi~~L~~~l~~~~~~~~l~~ilt~V~~~V~~~~~~~~~~kQ~p~~~s  230 (241)
T smart00115      159 EADFLAAYSTTPGYVSWRNPTRGSWFIQSLCQVLKEYARSLDLLDILTEVNRKVAVKFESVHAKKQMPTIES  230 (241)
T ss_pred             cCcEEEEEeCCCCeEeecCCCCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhhhcccCCcEeCCccEe
Confidence            99999999999999999976    8999999998873    355677777776655432    345555443

Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.

>cd00032 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis)

Probab=100.00  E-value=2.6e-47  Score=371.89  Aligned_cols=213  Identities=36%  Similarity=0.569  Sum_probs=185.3

Q ss_pred             ceeCCCCceeEEEEEeCCCCCCCCCCCCCChHHhHHHHHHHHHhCCcEEEEecCCCHHHHHHHHHHHHhhcCCCCceEEE
Q psy15857         16 YYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVIQNAIDEAAEQDYTDADCFVM   95 (455)
Q Consensus        16 ~Y~m~~~~~G~aLIInN~~F~~~~l~~R~Gs~~D~~~L~~~F~~LGF~V~~~~nlt~~em~~~l~~~s~~d~~~~d~~vv   95 (455)
                      .|+|++.++|+||||||..|.. .+..|.||.+|+++|+++|++|||+|+++.|+|.+||.+.|++|++.++..+||++|
T Consensus         1 ~y~m~~~~~g~aLII~n~~f~~-~~~~r~g~~~D~~~l~~~f~~lgF~V~~~~nlt~~~~~~~l~~f~~~~~~~~d~~v~   79 (243)
T cd00032           1 IYKMNSKRRGLALIINNENFDK-GLKDRDGTDVDAENLTKLFESLGYEVEVKNNLTAEEILEELKEFASPDHSDSDSFVC   79 (243)
T ss_pred             CcCCCCCCCCEEEEEechhcCC-CCCCCCChHHHHHHHHHHHHHCCCEEEEeCCCCHHHHHHHHHHHHhccCCCCCeeEE
Confidence            4999999999999999999973 388999999999999999999999999999999999999999999877999999999


Q ss_pred             EEecCCCCceeeeeCCc-cChhhhHHhhccccccccCCCceEEEEecccCCccCCCceeeeccC--------CCCCCCcC
Q psy15857         96 AVLTHGEDGILHAKDVP-YKPKNLWSKFTADNCLTLAGKPKLFFIQACQGDKLDAGVTIRTQVD--------GHPSNTYS  166 (455)
Q Consensus        96 vilSHG~~g~I~g~D~~-v~~~~I~~~F~~~~c~~L~gKPKlFfiQACRG~~~d~gv~~~~~~d--------~~~~~~~~  166 (455)
                      ||||||.++.|+|+|+. |++++|++.|.+.+||+|.+||||||||||||++.+.|+......+        +.......
T Consensus        80 ~~~sHG~~~~l~~~D~~~v~l~~i~~~f~~~~~~sl~~kPKl~~iqACRg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (243)
T cd00032          80 VILSHGEEGGIYGTDGDVVPIDEITSLFNGDNCPSLAGKPKLFFIQACRGDELDLGVEVDSGADEPPDVETEAEDDAVQT  159 (243)
T ss_pred             EECCCCCCCEEEEecCcEEEHHHHHHhhccCCCccccCCCcEEEEECCCCCcCCCceeccCccccccccccccccccccC
Confidence            99999999999999965 9999999999999999999999999999999999998865421111        12235678


Q ss_pred             CCCCCCEEEEEccCCCCccccCc----hhHHHHHHHHhHhH----HHHhhhcccCCCCcccc----ccccccccC
Q psy15857        167 IPLHADFLMAYSTISDSPMFGQR----FGLKDKCSKVVSKT----YQVMSSNVDTSNGECQT----DGHESHTNG  229 (455)
Q Consensus       167 iP~~aD~Li~yST~pG~vS~R~~----~fIq~Lc~~~~~~~----~~~m~~~~~~~~~e~~~----~~~~~~~~~  229 (455)
                      +|..+|+||+|||+|||+|||++    ||||+||+.|.+..    ...|..++++.+..-..    ..|.||..+
T Consensus       160 ~p~~~d~lv~ysT~pG~~a~r~~~~gS~fi~~l~~~l~~~~~~~~l~~il~~V~~~V~~~~~~~~~~kQ~P~~~s  234 (243)
T cd00032         160 IPVEADFLVAYSTVPGYVSWRNTKKGSWFIQSLCQVLRKYAHSLDLLDILTKVNRKVAEKFESVNGKKQMPCFRS  234 (243)
T ss_pred             CCCcccEEEEecCCCCeEeecCCCCCCEeHHHHHHHHHHhCCCCcHHHHHHHHHHHHhhhhccCCCceeCCcccc
Confidence            89999999999999999999976    89999999998753    55567777766665544    577777644

Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologs.

>KOG3573|consensus

Probab=99.97  E-value=8.4e-31  Score=263.21  Aligned_cols=200  Identities=31%  Similarity=0.455  Sum_probs=180.2

Q ss_pred             ccccccCCCCceeCCCCceeEEEEEeCCCCCC-CCCCCCCChHHhHHHHHHHHHhCCcEEEEecCCCHHHHHHHHHHHHh
Q psy15857          6 AKSTVEKDADYYRMDHKHRGLALIFNHEHFDS-PHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVIQNAIDEAAE   84 (455)
Q Consensus         6 ~~~~~~~~~~~Y~m~~~~~G~aLIInN~~F~~-~~l~~R~Gs~~D~~~L~~~F~~LGF~V~~~~nlt~~em~~~l~~~s~   84 (455)
                      ++.+....+..|.|.+..++.++|+++.+|.. ..+..|.|+..|+..|.+.++.++|.+...++.+..+|...+++++.
T Consensus        52 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~r~~~~~l~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  131 (300)
T KOG3573|consen   52 ERKPKRSSASTYDMALLELEKLLILGKQNLDLLIDLKSRVGTELLATILESYERDLGFEVTTANDDIPGEMQSLLKEVSY  131 (300)
T ss_pred             hccCCCccccccccchhhhHHhhhcChhhcchhhccccccChHHHHHHHHHhhhccCCCccccCccccHHHHHHHHHhhh
Confidence            45566667788999999999999999999986 46889999999999999999999999999999999999999999999


Q ss_pred             hcCCCCceEEEEEecCCCCceeeeeCCccChhhhHHhhccccccccCCCceEEEEecccCCccCCCceeeecc-CCCCCC
Q psy15857         85 QDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAGKPKLFFIQACQGDKLDAGVTIRTQV-DGHPSN  163 (455)
Q Consensus        85 ~d~~~~d~~vvvilSHG~~g~I~g~D~~v~~~~I~~~F~~~~c~~L~gKPKlFfiQACRG~~~d~gv~~~~~~-d~~~~~  163 (455)
                      .++.+.+|+.+...|||+...+++.+..+++++|+..|.+.+||+|.+|||+||||||||.+.+.|+...... +.....
T Consensus       132 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~f~~~~c~~L~~kPK~~~iqac~g~~~~~~~~~~~~~~~~~~~~  211 (300)
T KOG3573|consen  132 LDDSDNNCTACSMLSHGEEKHIYAKDDVLPLEDIFHGFNGANCPSLKGKPKVFFIQACRGDQLDLGVFPDVDTEKLDDDA  211 (300)
T ss_pred             hcccccchhhhhhhcccccceeccCCCeeeHHHHHHHhhhccChhhhcCCcEEEehhccCCCCCCCccccccccccccch
Confidence            9999999999999999999999999999999999999999999999999999999999999999888651111 112245


Q ss_pred             CcCCCCCCCEEEEEccCCCCccccCc----hhHHHHHHHHhHhHHH
Q psy15857        164 TYSIPLHADFLMAYSTISDSPMFGQR----FGLKDKCSKVVSKTYQ  205 (455)
Q Consensus       164 ~~~iP~~aD~Li~yST~pG~vS~R~~----~fIq~Lc~~~~~~~~~  205 (455)
                      .+.+|.++|||++|||+|||+|||++    ||||+||+.+.+....
T Consensus       212 ~~~ips~aD~L~~~st~~g~~s~R~~~~gsw~Iq~Lc~~~~~~~~~  257 (300)
T KOG3573|consen  212 TYKIPSEADFLVSYSTTPGYVSWRDPTKGSWFIQSLCEVLQEYAKS  257 (300)
T ss_pred             hccCccccceeEeeecCCCceeeecCCCceeeHHHHHHHHHHhcch
Confidence            77889999999999999999999987    8999999988888654

>PF00656 Peptidase_C14: Caspase domain; InterPro: IPR011600 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.86  E-value=4.9e-21  Score=184.62  Aligned_cols=175  Identities=18%  Similarity=0.227  Sum_probs=144.1

Q ss_pred             eEEEEEeCCCCCCCCCCCCCChHHhHHHHHHHHHhCCcEEEE--ecCCCHHHHHHHHHHHHhhcCCCCceEEEEEecCCC
Q psy15857         25 GLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKP--YHDPEFKVIQNAIDEAAEQDYTDADCFVMAVLTHGE  102 (455)
Q Consensus        25 G~aLIInN~~F~~~~l~~R~Gs~~D~~~L~~~F~~LGF~V~~--~~nlt~~em~~~l~~~s~~d~~~~d~~vvvilSHG~  102 (455)
                      ++||||+|..|..  ..+|.|+.+|++.|+++|+++||.|..  ..|+|.++|.+.|+++.+... ..|+++|+|++||.
T Consensus         1 ~~AliIg~~~y~~--~~~L~~~~~D~~~~~~~L~~~gf~~~~~l~~~~t~~~i~~~l~~l~~~~~-~~D~~~~yfsGHG~   77 (248)
T PF00656_consen    1 KRALIIGVNYYQN--PPPLPGAVNDAEAMAEALEKLGFDVENILIDNATRANILKALRELLQRAQ-PGDSVVFYFSGHGI   77 (248)
T ss_dssp             EEEEEEEESSTSS--TCHCTTHHHHHHHHHHHHHHTTEEEEEEEEESSSHHHHHHHHHHHHTSGG-TCSEEEEEEESEEE
T ss_pred             CEEEEEEeeCCCC--CCCCCCHHHHHHHHHHHHHHcCCceeeccccchHHHHHHHHHhhhhccCC-CCCeeEEEEecccc
Confidence            6899999999984  489999999999999999999999999  999999999999999997644 67999999999997


Q ss_pred             C------ceeeeeCCc-cChhh---hHHhhccccccccCCCceEEEEecccCCccCCCceeeeccC-------------C
Q psy15857        103 D------GILHAKDVP-YKPKN---LWSKFTADNCLTLAGKPKLFFIQACQGDKLDAGVTIRTQVD-------------G  159 (455)
Q Consensus       103 ~------g~I~g~D~~-v~~~~---I~~~F~~~~c~~L~gKPKlFfiQACRG~~~d~gv~~~~~~d-------------~  159 (455)
                      .      +.+.+.|+. ++++.   +...|....|+.+..|||+||+|+||+.....+........             .
T Consensus        78 ~~~~~~~~~~~~~d~~~~~~d~~~~~~~~l~~~~~~~~~~~~k~~ilD~C~sg~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (248)
T PF00656_consen   78 QVDGEGGDEDSGYDGYLLPLDANLILDDELRDLLCKSLPKKPKLFILDCCRSGGFIDGLSSSSGESSKREERKLSSSIPP  157 (248)
T ss_dssp             TETTCCSTEEEETSSEEEEHHHHEEHHHHTSTTTTGGGTTS-EEEEEESESSSBTBCEEEEEESSSTSS-EECHCCCCCC
T ss_pred             ccCCccCcccccccceeeecchhhhHHHHHhhhhhhhccCCccEEeeccccCCccCCccccccccccccccccccccccc
Confidence            5      467777887 78887   88899988899999999999999999987665443211110             1


Q ss_pred             CCCCCcCCCCCCCEEEEEccCCCCccccCc-----hhHHHHHHHHhHh
Q psy15857        160 HPSNTYSIPLHADFLMAYSTISDSPMFGQR-----FGLKDKCSKVVSK  202 (455)
Q Consensus       160 ~~~~~~~iP~~aD~Li~yST~pG~vS~R~~-----~fIq~Lc~~~~~~  202 (455)
                      ........|..+++++++||.+|++||+..     +|++.||+.|.+.
T Consensus       158 ~~~~~~~~~~~~~~~~~~as~~~~~s~e~~~~~~g~ft~~L~~~L~~~  205 (248)
T PF00656_consen  158 EDPNRSDVPSPSGFIVLSASRPGQTSYEDSPGSGGLFTYALLEALKGN  205 (248)
T ss_dssp             SSCCSEEEETTTSEEEEESSSTTBCEEEECTTTEEHHHHHHHHHHHHH
T ss_pred             cccccccccCCCCcEEEEeccccceeecccCccCHHHHHHHHHHHHhh
Confidence            112334556778999999999999999982     5999999988554

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of sequences represent the p20 (20kDa) and p10 (10kDa) subunits of caspases, which together form the catalytic domain of the caspase and are derived from the p45 (45 kDa) precursor (IPR002398 from INTERPRO) []. Caspases (Cysteine-dependent ASPartyl-specific proteASE) are cysteine peptidases that belong to the MEROPS peptidase family C14 (caspase family, clan CD) based on the architecture of their catalytic dyad or triad []. Caspases are tightly regulated proteins that require zymogen activation to become active, and once active can be regulated by caspase inhibitors. Activated caspases act as cysteine proteases, using the sulphydryl group of a cysteine side chain for catalysing peptide bond cleavage at aspartyl residues in their substrates. The catalytic cysteine and histidine residues are on the p20 subunit after cleavage of the p45 precursor. Caspases are mainly involved in mediating cell death (apoptosis) [, , ]. They have two main roles within the apoptosis cascade: as initiators that trigger the cell death process, and as effectors of the process itself. Caspase-mediated apoptosis follows two main pathways, one extrinsic and the other intrinsic or mitochondrial-mediated. The extrinsic pathway involves the stimulation of various TNF (tumour necrosis factor) cell surface receptors on cells targeted to die by various TNF cytokines that are produced by cells such as cytotoxic T cells. The activated receptor transmits the signal to the cytoplasm by recruiting FADD, which forms a death-inducing signalling complex (DISC) with caspase-8. The subsequent activation of caspase-8 initiates the apoptosis cascade involving caspases 3, 4, 6, 7, 9 and 10. The intrinsic pathway arises from signals that originate within the cell as a consequence of cellular stress or DNA damage. The stimulation or inhibition of different Bcl-2 family receptors results in the leakage of cytochrome c from the mitochondria, and the formation of an apoptosome composed of cytochrome c, Apaf1 and caspase-9. The subsequent activation of caspase-9 initiates the apoptosis cascade involving caspases 3 and 7, among others. At the end of the cascade, caspases act on a variety of signal transduction proteins, cytoskeletal and nuclear proteins, chromatin-modifying proteins, DNA repair proteins and endonucleases that destroy the cell by disintegrating its contents, including its DNA. The different caspases have different domain architectures depending upon where they fit into the apoptosis cascades, however they all carry the catalytic p10 and p20 subunits. Caspases can have roles other than in apoptosis, such as caspase-1 (interleukin-1 beta convertase) (3.4.22.36 from EC), which is involved in the inflammatory process. The activation of apoptosis can sometimes lead to caspase-1 activation, providing a link between apoptosis and inflammation, such as during the targeting of infected cells. Caspases may also be involved in cell differentiation [].; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 1M72_C 2NN3_C 3V4L_A 3IBF_B 2QLF_D 2QLB_C 3IBC_B 2QL9_A 3R5K_B 3H1P_A ....

>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues

Probab=99.75  E-value=3.3e-18  Score=167.00  Aligned_cols=108  Identities=24%  Similarity=0.382  Sum_probs=99.3

Q ss_pred             ccCCCCcceEEEEEeCCCCCCCCCCCCCCChHhHHHHHHHHhhcCCEEEEecCccHHHHHHHhhcCCCcccccccccccc
Q psy15857        291 YRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVIQNAIDEGPVAKSTVEKDADYY  370 (455)
Q Consensus       291 Y~m~~~~rG~~lI~n~~~F~~~~l~~R~Gt~~D~~~l~~~~~~Lgf~V~~~~d~~~~~i~~~l~k~~~~~s~~~~~~~~Y  370 (455)
                      |+|+|+|||+||||||.+|.  .++.|.||.+|+++|.++|++|||+|+++.|++.+||.+.|+             +..
T Consensus         1 Y~m~~~p~g~alII~n~~f~--~~~~r~g~~~D~~~l~~~f~~lgF~V~~~~dlt~~em~~~l~-------------~~~   65 (241)
T smart00115        1 YRMNSKPRGLALIINNENFH--SLPRRNGTDVDAENLTELFQSLGYEVHVKNNLTAEEMLEELK-------------EFA   65 (241)
T ss_pred             CCCCCCCCcEEEEEECccCC--CCcCCCCcHHHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHH-------------HHH
Confidence            99999999999999999997  599999999999999999999999999999999999999998             445


Q ss_pred             cC-CCCcccEEEEEEeccCCCCCCCCCCCcHHhHHHHHHHHHhc
Q psy15857        371 RM-DHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNL  413 (455)
Q Consensus       371 ~m-~~~~~g~~lIin~~~F~~~~l~~R~Gs~~D~e~L~~~F~~L  413 (455)
                      ++ +|...++++++..+|+..+.+.+.+|..++++.|...|+.-
T Consensus        66 ~~~~~~~~d~~v~~~~sHG~~~~l~~~D~~~v~l~~i~~~f~~~  109 (241)
T smart00115       66 ERPEHSDSDSFVCVLLSHGEEGGIYGTDHSPLPLDEIFSLFNGD  109 (241)
T ss_pred             hccccCCCCEEEEEEcCCCCCCeEEEecCCEEEHHHHHHhcccc
Confidence            53 78889999999999998888899999899999999999643

Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.

>cd00032 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis)

Probab=99.64  E-value=4.8e-16  Score=151.88  Aligned_cols=120  Identities=26%  Similarity=0.371  Sum_probs=103.7

Q ss_pred             cccCCCCcceEEEEEeCCCCCCCCCCCCCCChHhHHHHHHHHhhcCCEEEEecCccHHHHHHHhhcCCCccccccccccc
Q psy15857        290 YYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVIQNAIDEGPVAKSTVEKDADY  369 (455)
Q Consensus       290 ~Y~m~~~~rG~~lI~n~~~F~~~~l~~R~Gt~~D~~~l~~~~~~Lgf~V~~~~d~~~~~i~~~l~k~~~~~s~~~~~~~~  369 (455)
                      .|+|++.+||+||||||.+|.. .++.|.||..|++.|.++|++|||+|.++.|++.+||.+.|+             +.
T Consensus         1 ~y~m~~~~~g~aLII~n~~f~~-~~~~r~g~~~D~~~l~~~f~~lgF~V~~~~nlt~~~~~~~l~-------------~f   66 (243)
T cd00032           1 IYKMNSKRRGLALIINNENFDK-GLKDRDGTDVDAENLTKLFESLGYEVEVKNNLTAEEILEELK-------------EF   66 (243)
T ss_pred             CcCCCCCCCCEEEEEechhcCC-CCCCCCChHHHHHHHHHHHHHCCCEEEEeCCCCHHHHHHHHH-------------HH
Confidence            3999999999999999999973 489999999999999999999999999999999999999998             45


Q ss_pred             ccCCCCcccEEEEEEeccCCCCCCCCCCCcHHhHHHHHHHHHhcCCeEEEecCCC
Q psy15857        370 YRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPE  424 (455)
Q Consensus       370 Y~m~~~~~g~~lIin~~~F~~~~l~~R~Gs~~D~e~L~~~F~~LgF~V~~~~dlt  424 (455)
                      .+.++.+.++++++..+|+..+.+.+.++..+.++.|...|.... ++.+.++|+
T Consensus        67 ~~~~~~~~d~~v~~~~sHG~~~~l~~~D~~~v~l~~i~~~f~~~~-~~sl~~kPK  120 (243)
T cd00032          67 ASPDHSDSDSFVCVILSHGEEGGIYGTDGDVVPIDEITSLFNGDN-CPSLAGKPK  120 (243)
T ss_pred             HhccCCCCCeeEEEECCCCCCCEEEEecCcEEEHHHHHHhhccCC-CccccCCCc
Confidence            556788899999999999988778888888889999999987544 334444443

Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologs.

>COG4249 Uncharacterized protein containing caspase domain [General function prediction only]

Probab=98.29  E-value=4.2e-07  Score=94.32  Aligned_cols=197  Identities=14%  Similarity=0.083  Sum_probs=130.5

Q ss_pred             ceeEEEEEeCCCCCCCCCCCCCChHHhHHHHHHHHHhCCcEEEEecCCCHHHHHHHHHHHHhhcCCCCceEEEEEecCCC
Q psy15857         23 HRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVIQNAIDEAAEQDYTDADCFVMAVLTHGE  102 (455)
Q Consensus        23 ~~G~aLIInN~~F~~~~l~~R~Gs~~D~~~L~~~F~~LGF~V~~~~nlt~~em~~~l~~~s~~d~~~~d~~vvvilSHG~  102 (455)
                      .++.||||.|..+.  .-....+..+|+..++.++..+||+|....|+....|+..|+.|+.. ....+.++++..+||.
T Consensus         2 ~~r~alvigns~~~--~aa~l~np~~da~~~a~~L~~iGfdvy~~~d~~~~~~~~~L~~f~~d-a~ga~~al~~~aGhg~   78 (380)
T COG4249           2 ERRVALVIGNSTYY--VAAPLANPANDAGAMALWLTAIGFDVYLDTDLPKSGLRRALRYFAED-AEGADVALIYYAGHGL   78 (380)
T ss_pred             CcceEEEeecCccc--ccccCCCchhhHHHHHHHHHHcCceeecccccchHHHHhHHHHHHHH-HHHHhHHHhhhccccc
Confidence            47889999999776  35567789999999999999999999999999999999999999964 3446789999999998


Q ss_pred             C----ceeeeeCCc-----------cChhhhHHhhccccccccCCCceEEEEecccCCccC-CCceeeeccCCCCCCCcC
Q psy15857        103 D----GILHAKDVP-----------YKPKNLWSKFTADNCLTLAGKPKLFFIQACQGDKLD-AGVTIRTQVDGHPSNTYS  166 (455)
Q Consensus       103 ~----g~I~g~D~~-----------v~~~~I~~~F~~~~c~~L~gKPKlFfiQACRG~~~d-~gv~~~~~~d~~~~~~~~  166 (455)
                      +    +.+...|..           +.++.+..++.      ...+-+++|.++||.+... ..... ...-|..    .
T Consensus        79 Q~~~~~~~~pv~~~~~~~~~~~~~~v~~~~~~~~~p------~~~~V~~~~lD~~~~~~~~d~~~~~-fsG~g~~----~  147 (380)
T COG4249          79 QVDGTNYLLPVDADDVSPTFAVTEAVLIDCRLIPLP------ARTKVRRVLLDAARDNPPADTILFF-FSGHGAT----P  147 (380)
T ss_pred             cccCccccccchhhhccccchhhhhhhhhhhcccCC------chhHHHHHHHHHhhcCchhhhhhhe-eeccccc----c
Confidence            5    345555542           22222222222      3455678999999988762 21111 0011100    0


Q ss_pred             CCCCCCEEEEEccCCCCccccCch----hHHHHHHHHhHhHHHH--hhhcccCCCCccccccccccccCCCCc
Q psy15857        167 IPLHADFLMAYSTISDSPMFGQRF----GLKDKCSKVVSKTYQV--MSSNVDTSNGECQTDGHESHTNGSAVG  233 (455)
Q Consensus       167 iP~~aD~Li~yST~pG~vS~R~~~----fIq~Lc~~~~~~~~~~--m~~~~~~~~~e~~~~~~~~~~~~s~~~  233 (455)
                      -....++|+++.|.||.++++...    +-..+...+.+...++  |...+|..+..-+...+.+|...|...
T Consensus       148 ~~d~~~~lia~~t~p~~~a~~~~~~~s~~~~~~~~~~~~~~~ql~~~d~~~~~~~~~~~~~~~~p~l~~s~~~  220 (380)
T COG4249         148 GADGRAYLIAFDTRPGAVAYDGEGGISPYSVAQALHLSEPGNQLVDLDACVRGDVFKATAGQQRPWLAQSLAR  220 (380)
T ss_pred             CCCCceeEEeecCChhhhcccCCCcccHHHHHHHHHhccCCceeehhhhhcchhhhcccccccchHhhhhhhc
Confidence            023345999999999999986552    3333333344444333  445555555555555666776666554

>KOG3573|consensus

Probab=98.16  E-value=7.9e-07  Score=89.72  Aligned_cols=137  Identities=19%  Similarity=0.145  Sum_probs=109.2

Q ss_pred             cccccccCccccccCCCCcceEEEEEeCCCCCC-CCCCCCCCChHhHHHHHHHHhhcCCEEEEecCccHHHHHHHhhcCC
Q psy15857        279 VAKSTVEKDADYYRMDHKHRGLALIFNHEHFDS-PHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVIQNAIDEGP  357 (455)
Q Consensus       279 ~a~~~~~~~~~~Y~m~~~~rG~~lI~n~~~F~~-~~l~~R~Gt~~D~~~l~~~~~~Lgf~V~~~~d~~~~~i~~~l~k~~  357 (455)
                      .+++|....+..|+|+|..+|.++|+++++|+. ..+..|.||..|+.+|++.+..++|.|..+++.+..+|...++.  
T Consensus        51 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~r~~~~~l~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~--  128 (300)
T KOG3573|consen   51 DERKPKRSSASTYDMALLELEKLLILGKQNLDLLIDLKSRVGTELLATILESYERDLGFEVTTANDDIPGEMQSLLKE--  128 (300)
T ss_pred             hhccCCCccccccccchhhhHHhhhcChhhcchhhccccccChHHHHHHHHHhhhccCCCccccCccccHHHHHHHHH--
Confidence            467778788899999999999999999999996 47999999999999999999999999999999999999999984  


Q ss_pred             CcccccccccccccCCCCcccEEEEEEeccCCCCCCCCCCCcHHhHHHHHHHHHhcCCeEEEecCCCHHHHHH
Q psy15857        358 VAKSTVEKDADYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVIQN  430 (455)
Q Consensus       358 ~~~s~~~~~~~~Y~m~~~~~g~~lIin~~~F~~~~l~~R~Gs~~D~e~L~~~F~~LgF~V~~~~dlt~~eI~~  430 (455)
                                 .-.+.|....+..+...++... ....-.....+...|...|.... ++.+.++|+.--|+.
T Consensus       129 -----------~~~~~~~~~~~~~~~~~s~~~~-~~~~~~~~~~~~~~i~~~f~~~~-c~~L~~kPK~~~iqa  188 (300)
T KOG3573|consen  129 -----------VSYLDDSDNNCTACSMLSHGEE-KHIYAKDDVLPLEDIFHGFNGAN-CPSLKGKPKVFFIQA  188 (300)
T ss_pred             -----------hhhhcccccchhhhhhhccccc-ceeccCCCeeeHHHHHHHhhhcc-ChhhhcCCcEEEehh
Confidence                       3345555556665555555421 11223344478899999998887 688888887755543

>PF00656 Peptidase_C14: Caspase domain; InterPro: IPR011600 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.09  E-value=1e-05  Score=77.90  Aligned_cols=71  Identities=24%  Similarity=0.285  Sum_probs=64.7

Q ss_pred             cEEEEEEeccCCCCCCCCCCCcHHhHHHHHHHHHhcCCeEEE--ecCCCHHHHHHHHHh-----cCCcEEEEEEecccCC
Q psy15857        378 GLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKP--YHDPEFKVIQNAIDE-----GKDALIPSLFLPHSNK  450 (455)
Q Consensus       378 g~~lIin~~~F~~~~l~~R~Gs~~D~e~L~~~F~~LgF~V~~--~~dlt~~eI~~~l~~-----~~~~cfv~~ilSHG~~  450 (455)
                      +.||||.+..|...  ..+.|+..|++.|.++|+.+||.+..  ..++|.++|.+.|++     ...|+++|++++||..
T Consensus         1 ~~AliIg~~~y~~~--~~L~~~~~D~~~~~~~L~~~gf~~~~~l~~~~t~~~i~~~l~~l~~~~~~~D~~~~yfsGHG~~   78 (248)
T PF00656_consen    1 KRALIIGVNYYQNP--PPLPGAVNDAEAMAEALEKLGFDVENILIDNATRANILKALRELLQRAQPGDSVVFYFSGHGIQ   78 (248)
T ss_dssp             EEEEEEEESSTSST--CHCTTHHHHHHHHHHHHHHTTEEEEEEEEESSSHHHHHHHHHHHHTSGGTCSEEEEEEESEEET
T ss_pred             CEEEEEEeeCCCCC--CCCCCHHHHHHHHHHHHHHcCCceeeccccchHHHHHHHHHhhhhccCCCCCeeEEEEeccccc
Confidence            46899999999753  88999999999999999999999998  999999999999998     4668999999999964

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of sequences represent the p20 (20kDa) and p10 (10kDa) subunits of caspases, which together form the catalytic domain of the caspase and are derived from the p45 (45 kDa) precursor (IPR002398 from INTERPRO) []. Caspases (Cysteine-dependent ASPartyl-specific proteASE) are cysteine peptidases that belong to the MEROPS peptidase family C14 (caspase family, clan CD) based on the architecture of their catalytic dyad or triad []. Caspases are tightly regulated proteins that require zymogen activation to become active, and once active can be regulated by caspase inhibitors. Activated caspases act as cysteine proteases, using the sulphydryl group of a cysteine side chain for catalysing peptide bond cleavage at aspartyl residues in their substrates. The catalytic cysteine and histidine residues are on the p20 subunit after cleavage of the p45 precursor. Caspases are mainly involved in mediating cell death (apoptosis) [, , ]. They have two main roles within the apoptosis cascade: as initiators that trigger the cell death process, and as effectors of the process itself. Caspase-mediated apoptosis follows two main pathways, one extrinsic and the other intrinsic or mitochondrial-mediated. The extrinsic pathway involves the stimulation of various TNF (tumour necrosis factor) cell surface receptors on cells targeted to die by various TNF cytokines that are produced by cells such as cytotoxic T cells. The activated receptor transmits the signal to the cytoplasm by recruiting FADD, which forms a death-inducing signalling complex (DISC) with caspase-8. The subsequent activation of caspase-8 initiates the apoptosis cascade involving caspases 3, 4, 6, 7, 9 and 10. The intrinsic pathway arises from signals that originate within the cell as a consequence of cellular stress or DNA damage. The stimulation or inhibition of different Bcl-2 family receptors results in the leakage of cytochrome c from the mitochondria, and the formation of an apoptosome composed of cytochrome c, Apaf1 and caspase-9. The subsequent activation of caspase-9 initiates the apoptosis cascade involving caspases 3 and 7, among others. At the end of the cascade, caspases act on a variety of signal transduction proteins, cytoskeletal and nuclear proteins, chromatin-modifying proteins, DNA repair proteins and endonucleases that destroy the cell by disintegrating its contents, including its DNA. The different caspases have different domain architectures depending upon where they fit into the apoptosis cascades, however they all carry the catalytic p10 and p20 subunits. Caspases can have roles other than in apoptosis, such as caspase-1 (interleukin-1 beta convertase) (3.4.22.36 from EC), which is involved in the inflammatory process. The activation of apoptosis can sometimes lead to caspase-1 activation, providing a link between apoptosis and inflammation, such as during the targeting of infected cells. Caspases may also be involved in cell differentiation [].; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 1M72_C 2NN3_C 3V4L_A 3IBF_B 2QLF_D 2QLB_C 3IBC_B 2QL9_A 3R5K_B 3H1P_A ....

>KOG1546|consensus

Probab=95.25  E-value=0.25  Score=50.24  Aligned_cols=116  Identities=17%  Similarity=0.209  Sum_probs=74.5

Q ss_pred             ceeEEEEEeCCCCCCCCCCCCCChHHhHHHHHHHHHh-CCcEE---EEe--------cCCCHHHHHHHHHHHHhhcCCCC
Q psy15857         23 HRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVN-LGFVV---KPY--------HDPEFKVIQNAIDEAAEQDYTDA   90 (455)
Q Consensus        23 ~~G~aLIInN~~F~~~~l~~R~Gs~~D~~~L~~~F~~-LGF~V---~~~--------~nlt~~em~~~l~~~s~~d~~~~   90 (455)
                      .+.+||||.. +|.. ...+..|-.+|+.+|++++-+ +||.-   .+.        .-+|.+-|..+|+.+.+... .-
T Consensus        62 gkrrAvLiGI-NY~g-Tk~ELrGCINDv~~M~~~Lv~rfGFs~ddI~~LtDt~~s~~~~PT~~Nir~Al~wLV~~aq-~g  138 (362)
T KOG1546|consen   62 GKRRAVLIGI-NYPG-TKNELRGCINDVHRMRKLLVERFGFSEDDILMLTDTDESPVRIPTGKNIRRALRWLVESAQ-PG  138 (362)
T ss_pred             ccceEEEEee-cCCC-cHHHHhhhHHHHHHHHHHHHHhhCCChhheEEEecCCCcccccCcHHHHHHHHHHHHhcCC-CC
Confidence            3455888875 3432 345678999999999987754 89982   222        23688999999999987533 34


Q ss_pred             ceEEEEEecCCCC------c-------eeeeeCC----ccChhhhHHhhccccccccCCCceEEEEecccC
Q psy15857         91 DCFVMAVLTHGED------G-------ILHAKDV----PYKPKNLWSKFTADNCLTLAGKPKLFFIQACQG  144 (455)
Q Consensus        91 d~~vvvilSHG~~------g-------~I~g~D~----~v~~~~I~~~F~~~~c~~L~gKPKlFfiQACRG  144 (455)
                      |++|+=+.+||.+      +       .|+..|-    +|=-++++..+-.   |--.|-.=-.|+++|--
T Consensus       139 D~LvfHYSGHGtr~~~~~gDe~dG~DE~I~P~D~~t~G~iIdDe~~r~lV~---plp~G~~lt~I~DSCHS  206 (362)
T KOG1546|consen  139 DSLVFHYSGHGTRQPDTNGDEVDGYDETIVPCDHNTQGPIIDDEIFRILVR---PLPKGCKLTAISDSCHS  206 (362)
T ss_pred             CEEEEEecCCCCcCCCCCCCCCCCCcceeecccccccccccchHHHHHHHh---ccCCCceEEEEeecccC
Confidence            9999999999984      1       3555553    2222344444331   11134444567789973

>PF12770 CHAT: CHAT domain

Probab=94.41  E-value=0.35  Score=47.53  Aligned_cols=102  Identities=20%  Similarity=0.265  Sum_probs=77.2

Q ss_pred             EEEeCCCCCC-----CCCCCCCChHHhHHHHHHHHHhCCcEEEEecCCCHHHHHHHHHHHHhhcCCCCceEEEEEecCCC
Q psy15857         28 LIFNHEHFDS-----PHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVIQNAIDEAAEQDYTDADCFVMAVLTHGE  102 (455)
Q Consensus        28 LIInN~~F~~-----~~l~~R~Gs~~D~~~L~~~F~~LGF~V~~~~nlt~~em~~~l~~~s~~d~~~~d~~vvvilSHG~  102 (455)
                      |+|.+-.+..     ....+..++...++.|.+++..-+-.+.+....|.+++.+.+      ...  .+=++-|.+||.
T Consensus        82 l~i~~p~~~~~~~~~~~~~~l~~~~~e~~~l~~~~~~~~~~~~~~~~at~~~l~~~l------~~~--~~~ilH~a~Hg~  153 (287)
T PF12770_consen   82 LVIGNPDFGGSLIRGAALSPLPGAQREADALAELLGAGGLRVLVGPEATKDALLEAL------ERR--GPDILHFAGHGT  153 (287)
T ss_pred             EEEecCCCcccccccccccCchHHHHHHHHHHHHhcccceeEeeccCCCHHHHHhhh------ccC--CCCEEEEEcccc
Confidence            8888877652     124667888889999999999877788899999999999888      112  233899999998


Q ss_pred             Cc-------eeeee------CCccChhhhHHhhccccccccCCCceEEEEecccCC
Q psy15857        103 DG-------ILHAK------DVPYKPKNLWSKFTADNCLTLAGKPKLFFIQACQGD  145 (455)
Q Consensus       103 ~g-------~I~g~------D~~v~~~~I~~~F~~~~c~~L~gKPKlFfiQACRG~  145 (455)
                      .+       .+.-.      ++.++..+|.. +.      |.+ |+++|+.||...
T Consensus       154 ~~~~~~~~~~l~l~~~~~~~~~~l~~~~l~~-l~------l~~-~~lVvLsaC~s~  201 (287)
T PF12770_consen  154 FDPDPPDQSGLVLSDESGQEDGLLSAEELAQ-LD------LRG-PRLVVLSACESA  201 (287)
T ss_pred             cCCCCCCCCEEEEeccCCCCCcccCHHHHHh-hc------CCC-CCEEEecCcCCc
Confidence            54       45544      33489999988 32      333 999999999987

>PF01650 Peptidase_C13: Peptidase C13 family; InterPro: IPR001096 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=93.65  E-value=0.22  Score=49.40  Aligned_cols=100  Identities=17%  Similarity=0.293  Sum_probs=64.6

Q ss_pred             cCCCHHHHHHHHHHHHh----h--cCCCCceEEEEEecCCCCceeeeeCC-ccChhhhHHhhccccccccCCCce----E
Q psy15857         68 HDPEFKVIQNAIDEAAE----Q--DYTDADCFVMAVLTHGEDGILHAKDV-PYKPKNLWSKFTADNCLTLAGKPK----L  136 (455)
Q Consensus        68 ~nlt~~em~~~l~~~s~----~--d~~~~d~~vvvilSHG~~g~I~g~D~-~v~~~~I~~~F~~~~c~~L~gKPK----l  136 (455)
                      .+.|.+.+...|+-=..    +  ....-|-++|++.+||+.+.|.-.+. .+.-.+|...|..     +..+-+    +
T Consensus        78 ~~v~~~~fl~vL~G~~~~~~~kvl~s~~~D~vfiy~~~HG~~~~l~~~~~~~l~~~~L~~~L~~-----m~~~~~y~~lv  152 (256)
T PF01650_consen   78 EDVTPENFLNVLTGDKSVPSGKVLNSTENDNVFIYFTGHGGPGFLKFPDGEELTADDLADALDK-----MHEKKRYKKLV  152 (256)
T ss_pred             cccCHHHHHHHhcCCCCCCccccccCCCCCeEEEEEeccCCCCcccCCCcccccHHHHHHHHHH-----HHhhCCcceEE
Confidence            35666666655542111    0  12456789999999999998766554 4777777777753     333444    8


Q ss_pred             EEEecccCCccCCCceeeeccCCCCCCCcCCCCCCCEEEEEccCCCCccccC
Q psy15857        137 FFIQACQGDKLDAGVTIRTQVDGHPSNTYSIPLHADFLMAYSTISDSPMFGQ  188 (455)
Q Consensus       137 FfiQACRG~~~d~gv~~~~~~d~~~~~~~~iP~~aD~Li~yST~pG~vS~R~  188 (455)
                      |+++||...-+-.+                +|...++++.=|+.++..||=.
T Consensus       153 ~~veaC~SGs~~~~----------------L~~~~nv~~iTAa~~~e~Sy~~  188 (256)
T PF01650_consen  153 FVVEACYSGSFFEG----------------LLKSPNVYVITAANADESSYGC  188 (256)
T ss_pred             EEEecccccchhhc----------------cCCCCCEEEEecCCcccccccc
Confidence            99999997533221                2344578888888887777643

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C13 (legumain family, clan CD). A type example is legumain from Canavalia ensiformis (Jack bean, Horse bean). The blood fluke parasite Schistosoma mansoni has two cysteine proteases in its digestive tract, one a cathepsin B-like protease, the other termed hemoglobinase [, ]. The latter has been hard to purify, free of cathepsin B, and expressed forms in Escherichia coli prove to be inactive, suggesting that hemoglobinase may act in association with cathepsin B [, ]. Plant vacuolar processing enzyme and legumain from legumes [] have been shown to have sequence and functional similarity to hemoglobinase. The catalytic residues of the family are currently unknown, but sequence alignments reveal one totally conserved cysteine and two totally conserved histidines.; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis

>PF14538 Raptor_N: Raptor N-terminal CASPase like domain

Probab=91.21  E-value=5.2  Score=36.69  Aligned_cols=83  Identities=16%  Similarity=0.188  Sum_probs=62.7

Q ss_pred             HHHHHHHHHhC--CcEEEEecCCCHHHHHHHHHHHHhhcCCCCceEEEEEecCCCC-----ceeeeeCC------ccChh
Q psy15857         50 FENLYTTLVNL--GFVVKPYHDPEFKVIQNAIDEAAEQDYTDADCFVMAVLTHGED-----GILHAKDV------PYKPK  116 (455)
Q Consensus        50 ~~~L~~~F~~L--GF~V~~~~nlt~~em~~~l~~~s~~d~~~~d~~vvvilSHG~~-----g~I~g~D~------~v~~~  116 (455)
                      .+.|..-++++  .-.+....|+|.+++++.+..+++....  +-+++-+.+||..     |.|+..|.      ++++.
T Consensus        50 ~~~l~~qY~~~~~~~~~~~~~dpt~e~~~~~~~~~R~~a~~--~RvLFHYnGhGvP~Pt~~GeIw~f~~~~tqyip~si~  127 (154)
T PF14538_consen   50 GKNLQSQYESWQPRARYKQSLDPTVEDLKRLCQSLRRNAKD--ERVLFHYNGHGVPRPTENGEIWVFNKNYTQYIPLSIY  127 (154)
T ss_pred             HHHHHHHHHHhCccCcEEEecCCCHHHHHHHHHHHHhhCCC--ceEEEEECCCCCCCCCCCCeEEEEcCCCCcceEEEHH
Confidence            44455555555  3457788899999999999999875332  6789999999983     77887664      36788


Q ss_pred             hhHHhhccccccccCCCceEEEEeccc
Q psy15857        117 NLWSKFTADNCLTLAGKPKLFFIQACQ  143 (455)
Q Consensus       117 ~I~~~F~~~~c~~L~gKPKlFfiQACR  143 (455)
                      ||.+.         .|.|-+|++++..
T Consensus       128 dL~~~---------lg~Psi~V~DC~~  145 (154)
T PF14538_consen  128 DLQSW---------LGSPSIYVFDCSN  145 (154)
T ss_pred             HHHHh---------cCCCEEEEEECCc
Confidence            88774         4789999999753

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	455
1m72_A	272	Crystal Structure Of Caspase-1 From Spodoptera Frug		5e-58
1m72_A	272	Crystal Structure Of Caspase-1 From Spodoptera Frug		6e-14
1m72_A	272	Crystal Structure Of Caspase-1 From Spodoptera Frug		6e-14
2nn3_C	310	Structure Of Pro-Sf-Caspase-1 Length = 310		4e-57
2nn3_C	310	Structure Of Pro-Sf-Caspase-1 Length = 310		7e-17
2nn3_C	310	Structure Of Pro-Sf-Caspase-1 Length = 310		5e-14
3sir_A	259	Crystal Structure Of Drice Length = 259		8e-53
3sir_A	259	Crystal Structure Of Drice Length = 259		5e-14
3sir_A	259	Crystal Structure Of Drice Length = 259		5e-14
3sip_A	157	Crystal Structure Of Drice And Diap1-Bir1 Complex L		2e-44
3sip_A	157	Crystal Structure Of Drice And Diap1-Bir1 Complex L		5e-14
3sip_A	157	Crystal Structure Of Drice And Diap1-Bir1 Complex L		5e-14
4fdl_A	305	Crystal Structure Of Caspase-7 Length = 305		5e-29
1i4o_A	280	Crystal Structure Of The XiapCASPASE-7 Complex Leng		6e-29
4fxo_A	299	Zinc-Mediated Allosteric Inhibiton Of Caspase-6 Len		8e-29
4fxo_A	299	Zinc-Mediated Allosteric Inhibiton Of Caspase-6 Len		7e-08
4fxo_A	299	Zinc-Mediated Allosteric Inhibiton Of Caspase-6 Len		7e-08
2wdp_A	293	Crystal Structure Of Ligand Free Human Caspase-6 Le		8e-29
2wdp_A	293	Crystal Structure Of Ligand Free Human Caspase-6 Le		7e-08
2wdp_A	293	Crystal Structure Of Ligand Free Human Caspase-6 Le		7e-08
4fea_A	247	Crystal Structure Of Caspase-7 In Complex With Allo		1e-28
3v6l_A	282	Crystal Structure Of Caspase-6 Inactivation Mutatio		1e-28
3v6l_A	282	Crystal Structure Of Caspase-6 Inactivation Mutatio		6e-08
3v6l_A	282	Crystal Structure Of Caspase-6 Inactivation Mutatio		6e-08
3nkf_A	277	Crystal Structure Of Human Ligand-Free Mature Caspa		1e-28
3nkf_A	277	Crystal Structure Of Human Ligand-Free Mature Caspa		7e-08
3nkf_A	277	Crystal Structure Of Human Ligand-Free Mature Caspa		7e-08
3k7e_A	278	Crystal Structure Of Human Ligand-Free Mature Caspa		1e-28
3k7e_A	278	Crystal Structure Of Human Ligand-Free Mature Caspa		7e-08
3k7e_A	278	Crystal Structure Of Human Ligand-Free Mature Caspa		7e-08
3s8e_A	277	Phosphorylation Regulates Assembly Of The Caspase-6		1e-28
3s8e_A	277	Phosphorylation Regulates Assembly Of The Caspase-6		7e-08
3s8e_A	277	Phosphorylation Regulates Assembly Of The Caspase-6		7e-08
3v6m_A	279	Inhibition Of Caspase-6 Activity By Single Mutation		1e-28
3v6m_A	279	Inhibition Of Caspase-6 Activity By Single Mutation		7e-08
3v6m_A	279	Inhibition Of Caspase-6 Activity By Single Mutation		7e-08
3r5k_A	312	A Designed Redox-Controlled Caspase-7 Length = 312		3e-28
1k86_A	253	Crystal Structure Of Caspase-7 Length = 253		7e-28
1shj_A	262	Caspase-7 In Complex With Dica Allosteric Inhibitor		8e-28
1kmc_A	303	Crystal Structure Of The Caspase-7 XIAP-Bir2 Comple		9e-28
1f1j_A	305	Crystal Structure Of Caspase-7 In Complex With Acet		1e-27
3nr2_A	294	Crystal Structure Of Caspase-6 Zymogen Length = 294		1e-27
3nr2_A	294	Crystal Structure Of Caspase-6 Zymogen Length = 294		3e-08
3nr2_A	294	Crystal Structure Of Caspase-6 Zymogen Length = 294		7e-08
1gqf_B	265	Crystal Structure Of Human Procaspase-7 Length = 26		1e-27
4ejf_A	279	Allosteric Peptides That Bind To A Caspase Zymogen		2e-27
4ejf_A	279	Allosteric Peptides That Bind To A Caspase Zymogen		7e-08
4ejf_A	279	Allosteric Peptides That Bind To A Caspase Zymogen		7e-08
1shl_A	245	Caspase-7 In Complex With Fica Allosteric Inhibitor		4e-27
4eha_A	277	Allosteric Modulation Of Caspase-3 Through Mutagene		4e-27
3h0e_A	255	3,4-Dihydropyrimido(1,2-A)indol-10(2h)-Ones As Pote		6e-27
2j32_A	250	The Role Of Loop Bundle Hydrogen Bonds In The Matur		6e-27
3pd0_A	250	Caspase-3 E246a Length = 250		6e-27
3itn_A	250	Crystal Structure Of Pseudo-Activated Procaspase-3		6e-27
1cp3_A	277	Crystal Structure Of The Complex Of Apopain With Th		6e-27
2j33_A	250	The Role Of Loop Bundle Hydrogen Bonds In The Matur		7e-27
2j30_A	250	The Role Of Loop Bundle Hydrogen Bonds In The Matur		7e-27
3pd1_A	250	Caspase-3 K242a Length = 250		8e-27
3pcx_A	250	Caspase-3 E246a, K242a Double Mutant Length = 250		8e-27
3h1p_A	260	Mature Caspase-7 I213a With Devd-Cho Inhibitor Boun		1e-26
1nmq_A	249	Extendend Tethering: In Situ Assembly Of Inhibitors		1e-26
1qx3_A	257	Conformational Restrictions In The Active Site Of U		1e-26
4ehh_A	277	Allosteric Modulation Of Caspase-3 Through Mutagene		1e-26
2j31_A	250	The Role Of Loop Bundle Hydrogen Bonds In The Matur		1e-26
4ehl_A	277	Allosteric Modulation Of Caspase-3 Through Mutagene		1e-26
1k88_A	253	Crystal Structure Of Procaspase-7 Length = 253		1e-26
4ehf_A	277	Allosteric Modulation Of Caspase-3 Through Mutagene		4e-26
4ehd_A	277	Allosteric Modulation Of Caspase-3 Through Mutagene		4e-26
4ehk_A	277	Allosteric Modulation Of Caspase-3 Through Mutagene		9e-26
4ehn_A	277	Allosteric Modulation Of Caspase-3 Through Mutagene		1e-25
3deh_A	249	Crystal Structures Of Caspase-3 With Bound Isoquino		2e-25
3p45_C	179	Crystal Structure Of Apo-Caspase-6 At Physiological		4e-25
3p45_A	179	Crystal Structure Of Apo-Caspase-6 At Physiological		1e-07
3p45_A	179	Crystal Structure Of Apo-Caspase-6 At Physiological		1e-07
1i4e_B	258	Crystal Structure Of The Caspase-8P35 COMPLEX Lengt		5e-25
3p4u_A	157	Crystal Structure Of Active Caspase-6 In Complex Wi		7e-25
3p4u_A	157	Crystal Structure Of Active Caspase-6 In Complex Wi		1e-07
3p4u_A	157	Crystal Structure Of Active Caspase-6 In Complex Wi		1e-07
3qnw_A	156	Caspase-6 In Complex With Z-Vad-Fmk Inhibitor Lengt		7e-25
3qnw_A	156	Caspase-6 In Complex With Z-Vad-Fmk Inhibitor Lengt		1e-07
3qnw_A	156	Caspase-6 In Complex With Z-Vad-Fmk Inhibitor Lengt		1e-07
3h11_B	271	Zymogen Caspase-8:c-Flipl Protease Domain Complex L		4e-24
2ql5_A	173	Crystal Structure Of Caspase-7 With Inhibitor Ac-Dm		3e-23
2k7z_A	266	Solution Structure Of The Catalytic Domain Of Proca		6e-23
1i51_A	148	Crystal Structure Of Caspase-7 Complexed With Xiap		3e-22
1qdu_A	153	Crystal Structure Of The Complex Of Caspase-8 With		6e-22
1i3o_A	175	Crystal Structure Of The Complex Of Xiap-Bir2 And C		1e-21
1nme_A	146	Structure Of Casp-3 With Tethered Salicylate Length		2e-21
1pau_A	147	Crystal Structure Of The Complex Of Apopain With Th		3e-21
1qtn_A	164	Crystal Structure Of The Complex Of Caspase-8 With		4e-21
2c2z_A	159	Crystal Structure Of Caspase-8 In Complex With Aza-		6e-21
4dcp_A	147	Crystal Structure Of Caspase 3, L168f Mutant Length		1e-20
4dco_A	147	Crystal Structure Of Caspase 3, L168y Mutant Length		2e-20
4dcj_A	147	Crystal Structure Of Caspase 3, L168d Mutant Length		4e-20
2xzd_A	149	Caspase-3 In Complex With An Inhibitory Darpin-3.4		8e-20
1jxq_A	284	Structure Of Cleaved, Card Domain Deleted Caspase-9		8e-14
1nw9_B	277	Structure Of Caspase-9 In An Inhibitory Complex Wit		9e-14
3r5j_A	160	Crystal Structure Of Active Caspase-2 Bound With Ac		1e-13
1pyo_A	167	Crystal Structure Of Human Caspase-2 In Complex Wit		1e-13
3rjm_A	169	Caspase2 In Complex With Chdi Ligand 33c Length = 1		1e-13
2p2c_A	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		1e-13
2ar9_A	278	Crystal Structure Of A Dimeric Caspase-9 Length = 2		2e-12
3d6h_A	179	Crystal Structure Of Human Caspase-1 With A Natural		2e-08
3d6f_A	179	Crystal Structure Of Human Caspase-1 With A Natural		3e-08
1ibc_A	194	Crystal Structure Of Inhibited Interleukin-1beta Co		4e-08
3d6m_A	179	Crystal Structure Of Human Caspase-1 With A Natural		4e-08
1rwk_A	178	Crystal Structure Of Human Caspase-1 In Complex Wit		5e-08
2h4y_A	178	Crystal Structure Of Human Caspase-1 (Arg286->lys)		5e-08
1ice_A	167	Structure And Mechanism Of Interleukin-1beta Conver		7e-08
3ns7_A	162	Succinic Acid Amides As P2-P3 Replacements For Inhi		8e-08
2hbr_A	178	Crystal Structure Of Human Caspase-1 (Arg286->ala)		9e-08
1sc1_A	178	Crystal Structure Of An Active-Site Ligand-Free For		8e-07
3e4c_A	302	Procaspase-1 Zymogen Domain Crystal Strucutre Lengt		1e-06
2fp3_A	316	Crystal Structure Of The Drosophila Initiator Caspa		1e-06
3h11_A	272	Zymogen Caspase-8:c-Flipl Protease Domain Complex L		3e-05

>pdb|1M72|A Chain A, Crystal Structure Of Caspase-1 From Spodoptera Frugiperda Length = 272

Iteration: 1
 Score =  221 bits (564), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 105/177 (59%), Positives = 133/177 (75%), Gaps = 1/177 (0%)
Query: 5   VAKSTVEKDADYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVV 64
           VA+  V+++A YY M+HKHRG+A+IFNHEHFD   LKSR GT  D +NL   L  LGF V
Sbjct: 13  VARMPVDRNAPYYNMNHKHRGMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGFKV 72
Query: 65  KPYHDPEFKVIQNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTA 124
             + + + + I   I + AE D++DADC ++AVLTHGE G+L+AKD  YKP NLW  FTA
Sbjct: 73  TVFPNLKSEEINKFIQQTAEMDHSDADCLLVAVLTHGELGMLYAKDTHYKPDNLWYYFTA 132
Query: 125 DNCLTLAGKPKLFFIQACQGDKLDAGVTI-RTQVDGHPSNTYSIPLHADFLMAYSTI 180
           D C TLAGKPKLFFIQACQGD+LD G+T+ RT+ DG PS +Y IP+HADFL+A+ST+
Sbjct: 133 DKCPTLAGKPKLFFIQACQGDRLDGGITLSRTETDGSPSTSYRIPVHADFLIAFSTV 189

>pdb|1M72|A Chain A, Crystal Structure Of Caspase-1 From Spodoptera Frugiperda Length = 272

Iteration: 1
 Score = 75.5 bits (184), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 37/77 (48%), Positives = 50/77 (64%)
Query: 279 VAKSTVEKDADYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVV 338
           VA+  V+++A YY M+HKHRG+A+IFNHEHFD   LKSR GT  D +NL   L  LGF V
Sbjct: 13  VARMPVDRNAPYYNMNHKHRGMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGFKV 72
Query: 339 KPYHDPEFKVIQNAIDE 355
             + + + + I   I +
Sbjct: 73  TVFPNLKSEEINKFIQQ 89

>pdb|1M72|A Chain A, Crystal Structure Of Caspase-1 From Spodoptera Frugiperda Length = 272

Iteration: 1
 Score = 75.5 bits (184), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 37/77 (48%), Positives = 50/77 (64%)
Query: 358 VAKSTVEKDADYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVV 417
           VA+  V+++A YY M+HKHRG+A+IFNHEHFD   LKSR GT  D +NL   L  LGF V
Sbjct: 13  VARMPVDRNAPYYNMNHKHRGMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGFKV 72
Query: 418 KPYHDPEFKVIQNAIDE 434
             + + + + I   I +
Sbjct: 73  TVFPNLKSEEINKFIQQ 89

>pdb|2NN3|C Chain C, Structure Of Pro-Sf-Caspase-1 Length = 310

Iteration: 1
 Score =  218 bits (556), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 104/177 (58%), Positives = 132/177 (74%), Gaps = 1/177 (0%)
Query: 5   VAKSTVEKDADYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVV 64
           VA+  V+++A YY M+HKHRG+A+IFNHEHFD   LKSR GT  D +NL   L  LGF V
Sbjct: 41  VARMPVDRNAPYYNMNHKHRGMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGFKV 100
Query: 65  KPYHDPEFKVIQNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTA 124
             + + + + I   I + AE D++DADC ++AVLT GE G+L+AKD  YKP NLW  FTA
Sbjct: 101 TVFPNLKSEEINKFIQQTAEMDHSDADCLLVAVLTAGELGMLYAKDTHYKPDNLWYYFTA 160
Query: 125 DNCLTLAGKPKLFFIQACQGDKLDAGVTI-RTQVDGHPSNTYSIPLHADFLMAYSTI 180
           D C TLAGKPKLFFIQACQGD+LD G+T+ RT+ DG PS +Y IP+HADFL+A+ST+
Sbjct: 161 DKCPTLAGKPKLFFIQACQGDRLDGGITLSRTETDGSPSTSYRIPVHADFLIAFSTV 217

>pdb|2NN3|C Chain C, Structure Of Pro-Sf-Caspase-1 Length = 310

Iteration: 1
 Score = 85.1 bits (209), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 48/106 (45%), Positives = 63/106 (59%), Gaps = 5/106 (4%)
Query: 250 ESHTNGSAVGKDEGDVLGFNFGRTRMKGPVAKSTVEKDADYYRMDHKHRGLALIFNHEHF 309
           +  TNG   G DEGD LG N   +     VA+  V+++A YY M+HKHRG+A+IFNHEHF
Sbjct: 17  KQRTNG---GGDEGDALGSN--SSSQPNRVARMPVDRNAPYYNMNHKHRGMAIIFNHEHF 71
Query: 310 DSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVIQNAIDE 355
           D   LKSR GT  D +NL   L  LGF V  + + + + I   I +
Sbjct: 72  DIHSLKSRTGTNVDSDNLSKVLKTLGFKVTVFPNLKSEEINKFIQQ 117

>pdb|2NN3|C Chain C, Structure Of Pro-Sf-Caspase-1 Length = 310

Iteration: 1
 Score = 75.5 bits (184), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 37/77 (48%), Positives = 50/77 (64%)
Query: 358 VAKSTVEKDADYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVV 417
           VA+  V+++A YY M+HKHRG+A+IFNHEHFD   LKSR GT  D +NL   L  LGF V
Sbjct: 41  VARMPVDRNAPYYNMNHKHRGMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGFKV 100
Query: 418 KPYHDPEFKVIQNAIDE 434
             + + + + I   I +
Sbjct: 101 TVFPNLKSEEINKFIQQ 117

>pdb|3SIR|A Chain A, Crystal Structure Of Drice Length = 259

Iteration: 1
 Score =  204 bits (519), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 98/176 (55%), Positives = 128/176 (72%), Gaps = 3/176 (1%)
Query: 8   STVEKDADYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPY 67
           S  ++ A  Y M HK+RG+ALIFNHEHF+ P LKSRAGT  D ENL   L  L F V  Y
Sbjct: 4   SVTDRHAAEYNMRHKNRGMALIFNHEHFEVPTLKSRAGTNVDCENLTRVLKQLDFEVTVY 63
Query: 68  HDPEFKVIQNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNC 127
            D  +K I   I+ +A Q+++D+DC ++A+L+HGE G ++AKD  YK  N+WS FTA++C
Sbjct: 64  KDCRYKDILRTIEYSASQNHSDSDCILVAILSHGEMGYIYAKDTQYKLDNIWSFFTANHC 123
Query: 128 LTLAGKPKLFFIQACQGDKLDAGVTI---RTQVDGHPSNTYSIPLHADFLMAYSTI 180
            +LAGKPKLFFIQACQGD+LD GVT+   +T+ DG  S +Y IP+HADFL+AYST+
Sbjct: 124 PSLAGKPKLFFIQACQGDRLDGGVTMQRSQTETDGDSSMSYKIPVHADFLIAYSTV 179

>pdb|3SIR|A Chain A, Crystal Structure Of Drice Length = 259

Iteration: 1
 Score = 75.9 bits (185), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 38/73 (52%), Positives = 45/73 (61%)
Query: 282 STVEKDADYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPY 341
           S  ++ A  Y M HK+RG+ALIFNHEHF+ P LKSRAGT  D ENL   L  L F V  Y
Sbjct: 4   SVTDRHAAEYNMRHKNRGMALIFNHEHFEVPTLKSRAGTNVDCENLTRVLKQLDFEVTVY 63
Query: 342 HDPEFKVIQNAID 354
            D  +K I   I+
Sbjct: 64  KDCRYKDILRTIE 76

>pdb|3SIR|A Chain A, Crystal Structure Of Drice Length = 259

Iteration: 1
 Score = 75.9 bits (185), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 38/73 (52%), Positives = 45/73 (61%)
Query: 361 STVEKDADYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPY 420
           S  ++ A  Y M HK+RG+ALIFNHEHF+ P LKSRAGT  D ENL   L  L F V  Y
Sbjct: 4   SVTDRHAAEYNMRHKNRGMALIFNHEHFEVPTLKSRAGTNVDCENLTRVLKQLDFEVTVY 63
Query: 421 HDPEFKVIQNAID 433
            D  +K I   I+
Sbjct: 64  KDCRYKDILRTIE 76

>pdb|3SIP|A Chain A, Crystal Structure Of Drice And Diap1-Bir1 Complex Length = 157

Iteration: 1
 Score =  177 bits (448), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 85/152 (55%), Positives = 110/152 (72%), Gaps = 1/152 (0%)
Query: 8   STVEKDADYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPY 67
           S  ++ A  Y M HK+RG+ALIFNHEHF+ P LKSRAGT  D ENL   L  L F V  Y
Sbjct: 4   SVTDRHAAEYNMRHKNRGMALIFNHEHFEVPTLKSRAGTNVDCENLTRVLKQLDFEVTVY 63
Query: 68  HDPEFKVIQNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNC 127
            D  +K I   I+ AA Q+++D+DC ++A+L+HGE G ++AKD  YK  N+WS FTA++C
Sbjct: 64  KDCRYKDILRTIEYAASQNHSDSDCILVAILSHGEMGYIYAKDTQYKLDNIWSFFTANHC 123
Query: 128 LTLAGKPKLFFIQACQGDKLDAGVTI-RTQVD 158
            +LAGKPKLFFIQACQGD+LD GVT+ R+Q +
Sbjct: 124 PSLAGKPKLFFIQACQGDRLDGGVTMQRSQTE 155

>pdb|3SIP|A Chain A, Crystal Structure Of Drice And Diap1-Bir1 Complex Length = 157

Iteration: 1
 Score = 75.5 bits (184), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 38/73 (52%), Positives = 45/73 (61%)
Query: 282 STVEKDADYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPY 341
           S  ++ A  Y M HK+RG+ALIFNHEHF+ P LKSRAGT  D ENL   L  L F V  Y
Sbjct: 4   SVTDRHAAEYNMRHKNRGMALIFNHEHFEVPTLKSRAGTNVDCENLTRVLKQLDFEVTVY 63
Query: 342 HDPEFKVIQNAID 354
            D  +K I   I+
Sbjct: 64  KDCRYKDILRTIE 76

>pdb|3SIP|A Chain A, Crystal Structure Of Drice And Diap1-Bir1 Complex Length = 157

Iteration: 1
 Score = 75.5 bits (184), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 38/73 (52%), Positives = 45/73 (61%)
Query: 361 STVEKDADYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPY 420
           S  ++ A  Y M HK+RG+ALIFNHEHF+ P LKSRAGT  D ENL   L  L F V  Y
Sbjct: 4   SVTDRHAAEYNMRHKNRGMALIFNHEHFEVPTLKSRAGTNVDCENLTRVLKQLDFEVTVY 63
Query: 421 HDPEFKVIQNAID 433
            D  +K I   I+
Sbjct: 64  KDCRYKDILRTIE 76

>pdb|4FDL|A Chain A, Crystal Structure Of Caspase-7 Length = 305

Iteration: 1
 Score =  125 bits (314), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 72/182 (39%), Positives = 106/182 (58%), Gaps = 12/182 (6%)
Query: 7   KSTVEKDADY-YRMDHKHRGLALIFNHEHFDS-PHLKSRAGTGADFENLYTTLVNLGFVV 64
           K+T ++   Y Y M+ +  G  +I N+++FD    +  R GT  D E L+    +LGF V
Sbjct: 51  KTTRDRVPTYQYNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDV 110
Query: 65  KPYHDPEFKVIQNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTA 124
             Y+D     +Q+ + +A+E+D+T+A CF   +L+HGE+ +++ KD     K+L + F  
Sbjct: 111 IVYNDCSCAKMQDLLKKASEEDHTNAACFACILLSHGEENVIYGKDGVTPIKDLTAHFRG 170
Query: 125 DNCLTLAGKPKLFFIQACQGDKLDAGVTIRTQVDGHPSN------TYSIPLHADFLMAYS 178
           D C TL  KPKLFFIQAC+G +LD G+    Q D  P N       Y IP+ ADFL AYS
Sbjct: 171 DRCKTLLEKPKLFFIQACRGTELDDGI----QADSGPINDTDANPRYKIPVEADFLFAYS 226
Query: 179 TI 180
           T+
Sbjct: 227 TV 228

>pdb|1I4O|A Chain A, Crystal Structure Of The XiapCASPASE-7 Complex Length = 280

Iteration: 1
 Score =  125 bits (313), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 72/182 (39%), Positives = 106/182 (58%), Gaps = 12/182 (6%)
Query: 7   KSTVEKDADY-YRMDHKHRGLALIFNHEHFDS-PHLKSRAGTGADFENLYTTLVNLGFVV 64
           K+T ++   Y Y M+ +  G  +I N+++FD    +  R GT  D E L+    +LGF V
Sbjct: 26  KTTRDRVPTYQYNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDV 85
Query: 65  KPYHDPEFKVIQNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTA 124
             Y+D     +Q+ + +A+E+D+T+A CF   +L+HGE+ +++ KD     K+L + F  
Sbjct: 86  IVYNDCSCAKMQDLLKKASEEDHTNAACFACILLSHGEENVIYGKDGVTPIKDLTAHFRG 145
Query: 125 DNCLTLAGKPKLFFIQACQGDKLDAGVTIRTQVDGHPSN------TYSIPLHADFLMAYS 178
           D C TL  KPKLFFIQAC+G +LD G+    Q D  P N       Y IP+ ADFL AYS
Sbjct: 146 DRCKTLLEKPKLFFIQACRGTELDDGI----QADSGPINDTDANPRYKIPVEADFLFAYS 201
Query: 179 TI 180
           T+
Sbjct: 202 TV 203

>pdb|4FXO|A Chain A, Zinc-Mediated Allosteric Inhibiton Of Caspase-6 Length = 299

Iteration: 1
 Score =  124 bits (312), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 71/179 (39%), Positives = 98/179 (54%), Gaps = 13/179 (7%)
Query: 14  ADYYRMDHKHRGLALIFNHEHF-DSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEF 72
           A+ Y+MDH+ RG+ALIFNHE F     L  R GT AD +NL     +LGF VK ++D + 
Sbjct: 34  AEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFNDLKA 93
Query: 73  KVIQNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAG 132
           + +   I E +   + DADCFV   L+HGE   ++A D   + + L   F  D C +L G
Sbjct: 94  EELLLKIHEVSTVSHADADCFVCVFLSHGEGNHIYAYDAKIEIQTLTGLFKGDKCHSLVG 153
Query: 133 KPKLFFIQACQGDKLDAGVTIRTQVDGH------------PSNTYSIPLHADFLMAYST 179
           KPK+F IQAC+G++ D  V     VD               ++ Y++P  ADFLM YS 
Sbjct: 154 KPKIFIIQACRGNQHDVPVIPLDVVDNQTEKLDTNITEVDAASVYTLPAGADFLMCYSV 212

>pdb|4FXO|A Chain A, Zinc-Mediated Allosteric Inhibiton Of Caspase-6 Length = 299

Iteration: 1
 Score = 55.5 bits (132), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 29/57 (50%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 288 ADYYRMDHKHRGLALIFNHEH-FDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHD 343
           A+ Y+MDH+ RG+ALIFNHE  F    L  R GT AD +NL     +LGF VK ++D
Sbjct: 34  AEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFND 90

>pdb|4FXO|A Chain A, Zinc-Mediated Allosteric Inhibiton Of Caspase-6 Length = 299

Iteration: 1
 Score = 55.5 bits (132), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 29/57 (50%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 367 ADYYRMDHKHRGLALIFNHEH-FDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHD 422
           A+ Y+MDH+ RG+ALIFNHE  F    L  R GT AD +NL     +LGF VK ++D
Sbjct: 34  AEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFND 90

>pdb|2WDP|A Chain A, Crystal Structure Of Ligand Free Human Caspase-6 Length = 293

Iteration: 1
 Score =  124 bits (312), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 71/179 (39%), Positives = 98/179 (54%), Gaps = 13/179 (7%)
Query: 14  ADYYRMDHKHRGLALIFNHEHF-DSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEF 72
           A+ Y+MDH+ RG+ALIFNHE F     L  R GT AD +NL     +LGF VK ++D + 
Sbjct: 34  AEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFNDLKA 93
Query: 73  KVIQNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAG 132
           + +   I E +   + DADCFV   L+HGE   ++A D   + + L   F  D C +L G
Sbjct: 94  EELLLKIHEVSTVSHADADCFVCVFLSHGEGNHIYAYDAKIEIQTLTGLFKGDKCHSLVG 153
Query: 133 KPKLFFIQACQGDKLDAGVTIRTQVDGH------------PSNTYSIPLHADFLMAYST 179
           KPK+F IQAC+G++ D  V     VD               ++ Y++P  ADFLM YS 
Sbjct: 154 KPKIFIIQACRGNQHDVPVIPLDVVDNQTEKLDTNITEVDAASVYTLPAGADFLMCYSV 212

>pdb|2WDP|A Chain A, Crystal Structure Of Ligand Free Human Caspase-6 Length = 293

Iteration: 1
 Score = 55.5 bits (132), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 29/57 (50%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 288 ADYYRMDHKHRGLALIFNHEH-FDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHD 343
           A+ Y+MDH+ RG+ALIFNHE  F    L  R GT AD +NL     +LGF VK ++D
Sbjct: 34  AEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFND 90

>pdb|2WDP|A Chain A, Crystal Structure Of Ligand Free Human Caspase-6 Length = 293

Iteration: 1
 Score = 55.5 bits (132), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 29/57 (50%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 367 ADYYRMDHKHRGLALIFNHEH-FDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHD 422
           A+ Y+MDH+ RG+ALIFNHE  F    L  R GT AD +NL     +LGF VK ++D
Sbjct: 34  AEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFND 90

>pdb|4FEA|A Chain A, Crystal Structure Of Caspase-7 In Complex With Allosteric Inhibitor Length = 247

Iteration: 1
 Score =  124 bits (311), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 69/171 (40%), Positives = 100/171 (58%), Gaps = 11/171 (6%)
Query: 17  YRMDHKHRGLALIFNHEHFDS-PHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVI 75
           Y M+ +  G  +I N+++FD    +  R GT  D E L+    +LGF V  Y+D     +
Sbjct: 4   YNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVIVYNDCSCAKM 63
Query: 76  QNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAGKPK 135
           Q+ + +A+E+D+T+A CF   +L+HGE+ +++ KD     K+L + F  D C TL  KPK
Sbjct: 64  QDLLKKASEEDHTNAACFACILLSHGEENVIYGKDGVTPIKDLTAHFRGDRCKTLLEKPK 123
Query: 136 LFFIQACQGDKLDAGVTIRTQVDGHPSN------TYSIPLHADFLMAYSTI 180
           LFFIQAC+G +LD G+    Q D  P N       Y IP+ ADFL AYST+
Sbjct: 124 LFFIQACRGTELDDGI----QADSGPINDTDANPRYKIPVEADFLFAYSTV 170

>pdb|3V6L|A Chain A, Crystal Structure Of Caspase-6 Inactivation Mutation Length = 282

Iteration: 1
 Score =  124 bits (311), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 71/179 (39%), Positives = 98/179 (54%), Gaps = 13/179 (7%)
Query: 14  ADYYRMDHKHRGLALIFNHEHF-DSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEF 72
           A+ Y+MDH+ RG+ALIFNHE F     L  R GT AD +NL     +LGF VK ++D + 
Sbjct: 15  AEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFNDLKA 74
Query: 73  KVIQNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAG 132
           + +   I E +   + DADCFV   L+HGE   ++A D   + + L   F  D C +L G
Sbjct: 75  EELLLKIHEVSTVSHADADCFVCVFLSHGEGNHIYAYDAKIEIQTLTGLFKGDKCHSLVG 134
Query: 133 KPKLFFIQACQGDKLDAGVTIRTQVDGH------------PSNTYSIPLHADFLMAYST 179
           KPK+F IQAC+G++ D  V     VD               ++ Y++P  ADFLM YS 
Sbjct: 135 KPKIFIIQACRGNQHDVPVIPLDVVDNQTEKLDTNITEVDAASVYTLPAGADFLMCYSV 193

>pdb|3V6L|A Chain A, Crystal Structure Of Caspase-6 Inactivation Mutation Length = 282

Iteration: 1
 Score = 55.5 bits (132), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 29/57 (50%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 288 ADYYRMDHKHRGLALIFNHEH-FDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHD 343
           A+ Y+MDH+ RG+ALIFNHE  F    L  R GT AD +NL     +LGF VK ++D
Sbjct: 15  AEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFND 71

>pdb|3V6L|A Chain A, Crystal Structure Of Caspase-6 Inactivation Mutation Length = 282

Iteration: 1
 Score = 55.5 bits (132), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 29/57 (50%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 367 ADYYRMDHKHRGLALIFNHEH-FDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHD 422
           A+ Y+MDH+ RG+ALIFNHE  F    L  R GT AD +NL     +LGF VK ++D
Sbjct: 15  AEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFND 71

>pdb|3NKF|A Chain A, Crystal Structure Of Human Ligand-Free Mature Caspase-6 With Intersubunit Linker Attached Length = 277

Iteration: 1
 Score =  124 bits (311), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 71/179 (39%), Positives = 98/179 (54%), Gaps = 13/179 (7%)
Query: 14  ADYYRMDHKHRGLALIFNHEHF-DSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEF 72
           A+ Y+MDH+ RG+ALIFNHE F     L  R GT AD +NL     +LGF VK ++D + 
Sbjct: 12  AEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFNDLKA 71
Query: 73  KVIQNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAG 132
           + +   I E +   + DADCFV   L+HGE   ++A D   + + L   F  D C +L G
Sbjct: 72  EELLLKIHEVSTVSHADADCFVCVFLSHGEGNHIYAYDAKIEIQTLTGLFKGDKCHSLVG 131
Query: 133 KPKLFFIQACQGDKLDAGVTIRTQVDGH------------PSNTYSIPLHADFLMAYST 179
           KPK+F IQAC+G++ D  V     VD               ++ Y++P  ADFLM YS 
Sbjct: 132 KPKIFIIQACRGNQHDVPVIPLDVVDNQTEKLDTNITEVDAASVYTLPAGADFLMCYSV 190

>pdb|3NKF|A Chain A, Crystal Structure Of Human Ligand-Free Mature Caspase-6 With Intersubunit Linker Attached Length = 277

Iteration: 1
 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 29/57 (50%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 288 ADYYRMDHKHRGLALIFNHEH-FDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHD 343
           A+ Y+MDH+ RG+ALIFNHE  F    L  R GT AD +NL     +LGF VK ++D
Sbjct: 12  AEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFND 68

>pdb|3NKF|A Chain A, Crystal Structure Of Human Ligand-Free Mature Caspase-6 With Intersubunit Linker Attached Length = 277

Iteration: 1
 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 29/57 (50%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 367 ADYYRMDHKHRGLALIFNHEH-FDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHD 422
           A+ Y+MDH+ RG+ALIFNHE  F    L  R GT AD +NL     +LGF VK ++D
Sbjct: 12  AEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFND 68

>pdb|3K7E|A Chain A, Crystal Structure Of Human Ligand-Free Mature Caspase-6 Length = 278

Iteration: 1
 Score =  124 bits (311), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 71/179 (39%), Positives = 98/179 (54%), Gaps = 13/179 (7%)
Query: 14  ADYYRMDHKHRGLALIFNHEHF-DSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEF 72
           A+ Y+MDH+ RG+ALIFNHE F     L  R GT AD +NL     +LGF VK ++D + 
Sbjct: 11  AEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFNDLKA 70
Query: 73  KVIQNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAG 132
           + +   I E +   + DADCFV   L+HGE   ++A D   + + L   F  D C +L G
Sbjct: 71  EELLLKIHEVSTVSHADADCFVCVFLSHGEGNHIYAYDAKIEIQTLTGLFKGDKCHSLVG 130
Query: 133 KPKLFFIQACQGDKLDAGVTIRTQVDGH------------PSNTYSIPLHADFLMAYST 179
           KPK+F IQAC+G++ D  V     VD               ++ Y++P  ADFLM YS 
Sbjct: 131 KPKIFIIQACRGNQHDVPVIPLDVVDNQTEKLDTNITEVDAASVYTLPAGADFLMCYSV 189

>pdb|3K7E|A Chain A, Crystal Structure Of Human Ligand-Free Mature Caspase-6 Length = 278

Iteration: 1
 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 29/57 (50%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 288 ADYYRMDHKHRGLALIFNHEH-FDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHD 343
           A+ Y+MDH+ RG+ALIFNHE  F    L  R GT AD +NL     +LGF VK ++D
Sbjct: 11  AEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFND 67

>pdb|3K7E|A Chain A, Crystal Structure Of Human Ligand-Free Mature Caspase-6 Length = 278

Iteration: 1
 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 29/57 (50%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 367 ADYYRMDHKHRGLALIFNHEH-FDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHD 422
           A+ Y+MDH+ RG+ALIFNHE  F    L  R GT AD +NL     +LGF VK ++D
Sbjct: 11  AEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFND 67

>pdb|3S8E|A Chain A, Phosphorylation Regulates Assembly Of The Caspase-6 Substrate-Binding Groove Length = 277

Iteration: 1
 Score =  124 bits (310), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 71/179 (39%), Positives = 98/179 (54%), Gaps = 13/179 (7%)
Query: 14  ADYYRMDHKHRGLALIFNHEHF-DSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEF 72
           A+ Y+MDH+ RG+ALIFNHE F     L  R GT AD +NL     +LGF VK ++D + 
Sbjct: 12  AEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFNDLKA 71
Query: 73  KVIQNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAG 132
           + +   I E +   + DADCFV   L+HGE   ++A D   + + L   F  D C +L G
Sbjct: 72  EELLLKIHEVSTVSHADADCFVCVFLSHGEGNHIYAYDAKIEIQTLTGLFKGDKCHSLVG 131
Query: 133 KPKLFFIQACQGDKLDAGVTIRTQVDGH------------PSNTYSIPLHADFLMAYST 179
           KPK+F IQAC+G++ D  V     VD               ++ Y++P  ADFLM YS 
Sbjct: 132 KPKIFIIQACRGNQHDVPVIPLDVVDNQTEKLDTNITEVDAASVYTLPAGADFLMCYSV 190

>pdb|3S8E|A Chain A, Phosphorylation Regulates Assembly Of The Caspase-6 Substrate-Binding Groove Length = 277

Iteration: 1
 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 29/57 (50%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 288 ADYYRMDHKHRGLALIFNHEH-FDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHD 343
           A+ Y+MDH+ RG+ALIFNHE  F    L  R GT AD +NL     +LGF VK ++D
Sbjct: 12  AEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFND 68

>pdb|3S8E|A Chain A, Phosphorylation Regulates Assembly Of The Caspase-6 Substrate-Binding Groove Length = 277

Iteration: 1
 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 29/57 (50%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 367 ADYYRMDHKHRGLALIFNHEH-FDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHD 422
           A+ Y+MDH+ RG+ALIFNHE  F    L  R GT AD +NL     +LGF VK ++D
Sbjct: 12  AEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFND 68

>pdb|3V6M|A Chain A, Inhibition Of Caspase-6 Activity By Single Mutation Outside The Active Site Length = 279

Iteration: 1
 Score =  124 bits (310), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 71/179 (39%), Positives = 98/179 (54%), Gaps = 13/179 (7%)
Query: 14  ADYYRMDHKHRGLALIFNHEHF-DSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEF 72
           A+ Y+MDH+ RG+ALIFNHE F     L  R GT AD +NL     +LGF VK ++D + 
Sbjct: 12  AEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFNDLKA 71
Query: 73  KVIQNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAG 132
           + +   I E +   + DADCFV   L+HGE   ++A D   + + L   F  D C +L G
Sbjct: 72  EELLLKIHEVSTVSHADADCFVCVFLSHGEGNHIYAYDAKIEIQTLTGLFKGDKCHSLVG 131
Query: 133 KPKLFFIQACQGDKLDAGVTIRTQVDGH------------PSNTYSIPLHADFLMAYST 179
           KPK+F IQAC+G++ D  V     VD               ++ Y++P  ADFLM YS 
Sbjct: 132 KPKIFIIQACRGNQHDVPVIPLDVVDNQTEKLDTNITEVDAASVYTLPAGADFLMCYSV 190

>pdb|3V6M|A Chain A, Inhibition Of Caspase-6 Activity By Single Mutation Outside The Active Site Length = 279

Iteration: 1
 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 29/57 (50%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 288 ADYYRMDHKHRGLALIFNHEH-FDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHD 343
           A+ Y+MDH+ RG+ALIFNHE  F    L  R GT AD +NL     +LGF VK ++D
Sbjct: 12  AEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFND 68

>pdb|3V6M|A Chain A, Inhibition Of Caspase-6 Activity By Single Mutation Outside The Active Site Length = 279

Iteration: 1
 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 29/57 (50%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 367 ADYYRMDHKHRGLALIFNHEH-FDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHD 422
           A+ Y+MDH+ RG+ALIFNHE  F    L  R GT AD +NL     +LGF VK ++D
Sbjct: 12  AEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFND 68

>pdb|3R5K|A Chain A, A Designed Redox-Controlled Caspase-7 Length = 312

Iteration: 1
 Score =  123 bits (308), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 70/181 (38%), Positives = 105/181 (58%), Gaps = 9/181 (4%)
Query: 7   KSTVEKDADY-YRMDHKHRGLALIFNHEHFDS-PHLKSRAGTGADFENLYTTLVNLGFVV 64
           K+T ++   Y Y M+ +  G  +I N+++FD    +  R GT  D E L+    +LGF V
Sbjct: 49  KTTRDRVPTYQYNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDV 108
Query: 65  KPYHDPEFKVIQNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTA 124
             Y+D     +Q+ + +A+E+D+T+A CF   +L+HGE+ +++ KD     K+L + F  
Sbjct: 109 IVYNDCSCAKMQDLLKKASEEDHTNAACFACILLSHGEENVIYGKDGVTPIKDLTAHFRG 168
Query: 125 DNCLTLAGKPKLFFIQACQGDKLDAGVTIRTQ-----VDGHPSNTYSIPLHADFLMAYST 179
           D C TL  KPKLFFIQAC+G +LD G+           D +P   Y IP+ ADFL AYST
Sbjct: 169 DRCKTLLEKPKLFFIQACRGTELDDGIQADMSGPINDTDANP--CYKIPVEADFLFAYST 226
Query: 180 I 180
           +
Sbjct: 227 V 227

>pdb|1K86|A Chain A, Crystal Structure Of Caspase-7 Length = 253

Iteration: 1
 Score =  121 bits (304), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 68/171 (39%), Positives = 99/171 (57%), Gaps = 11/171 (6%)
Query: 17  YRMDHKHRGLALIFNHEHFDS-PHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVI 75
           Y M+ +  G  +I N+++FD    +  R GT  D E L+    +LGF V  Y+D     +
Sbjct: 10  YNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVIVYNDCSCAKM 69
Query: 76  QNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAGKPK 135
           Q+ + +A+E+D+T+A CF   +L+HGE+ +++ KD     K+L + F    C TL  KPK
Sbjct: 70  QDLLKKASEEDHTNAACFACILLSHGEENVIYGKDGVTPIKDLTAHFRGARCKTLLEKPK 129
Query: 136 LFFIQACQGDKLDAGVTIRTQVDGHPSN------TYSIPLHADFLMAYSTI 180
           LFFIQAC+G +LD G+    Q D  P N       Y IP+ ADFL AYST+
Sbjct: 130 LFFIQACRGTELDDGI----QADSGPINDTDANPRYKIPVEADFLFAYSTV 176

>pdb|1SHJ|A Chain A, Caspase-7 In Complex With Dica Allosteric Inhibitor Length = 262

Iteration: 1
 Score =  121 bits (304), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 68/171 (39%), Positives = 99/171 (57%), Gaps = 11/171 (6%)
Query: 17  YRMDHKHRGLALIFNHEHFDS-PHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVI 75
           Y M+ +  G  +I N+++FD    +  R GT  D E L+    +LGF V  Y+D     +
Sbjct: 11  YNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVIVYNDCSCAKM 70
Query: 76  QNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAGKPK 135
           Q+ + +A+E+D+T+A CF   +L+HGE+ +++ KD     K+L + F    C TL  KPK
Sbjct: 71  QDLLKKASEEDHTNAACFACILLSHGEENVIYGKDGVTPIKDLTAHFRGARCKTLLEKPK 130
Query: 136 LFFIQACQGDKLDAGVTIRTQVDGHPSN------TYSIPLHADFLMAYSTI 180
           LFFIQAC+G +LD G+    Q D  P N       Y IP+ ADFL AYST+
Sbjct: 131 LFFIQACRGTELDDGI----QADSGPINDTDANPRYKIPVEADFLFAYSTV 177

>pdb|1KMC|A Chain A, Crystal Structure Of The Caspase-7 XIAP-Bir2 Complex Length = 303

Iteration: 1
 Score =  121 bits (303), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 71/182 (39%), Positives = 105/182 (57%), Gaps = 12/182 (6%)
Query: 7   KSTVEKDADY-YRMDHKHRGLALIFNHEHFDS-PHLKSRAGTGADFENLYTTLVNLGFVV 64
           K+T ++   Y Y M+ +  G  +I N+++FD    +  R GT  D E L+    +LGF V
Sbjct: 49  KTTRDRVPTYQYNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDV 108
Query: 65  KPYHDPEFKVIQNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTA 124
             Y+D     +Q+ + +A+E+D+T+A CF   +L+HGE+ +++ KD     K+L + F  
Sbjct: 109 IVYNDCSCAKMQDLLKKASEEDHTNAACFACILLSHGEENVIYGKDGVTPIKDLTAHFRG 168
Query: 125 DNCLTLAGKPKLFFIQACQGDKLDAGVTIRTQVDGHPSN------TYSIPLHADFLMAYS 178
           D C TL  KPKLFFIQA +G +LD G+    Q D  P N       Y IP+ ADFL AYS
Sbjct: 169 DRCKTLLEKPKLFFIQAARGTELDDGI----QADSGPINDTDANPRYKIPVEADFLFAYS 224
Query: 179 TI 180
           T+
Sbjct: 225 TV 226

>pdb|1F1J|A Chain A, Crystal Structure Of Caspase-7 In Complex With Acetyl-asp-glu-val-asp- Cho Length = 305

Iteration: 1
 Score =  121 bits (303), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 71/182 (39%), Positives = 105/182 (57%), Gaps = 12/182 (6%)
Query: 7   KSTVEKDADY-YRMDHKHRGLALIFNHEHFDS-PHLKSRAGTGADFENLYTTLVNLGFVV 64
           K+T ++   Y Y M+ +  G  +I N+++FD    +  R GT  D E L+    +LGF V
Sbjct: 51  KTTRDRVPTYQYNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDV 110
Query: 65  KPYHDPEFKVIQNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTA 124
             Y+D     +Q+ + +A+E+D+T+A CF   +L+HGE+ +++ KD     K+L + F  
Sbjct: 111 IVYNDCSCAKMQDLLKKASEEDHTNAACFACILLSHGEENVIYGKDGVTPIKDLTAHFRG 170
Query: 125 DNCLTLAGKPKLFFIQACQGDKLDAGVTIRTQVDGHPSN------TYSIPLHADFLMAYS 178
           D   TL  KPKLFFIQAC+G +LD G+    Q D  P N       Y IP+ ADFL AYS
Sbjct: 171 DRSKTLLEKPKLFFIQACRGTELDDGI----QADSGPINDTDANPRYKIPVEADFLFAYS 226
Query: 179 TI 180
           T+
Sbjct: 227 TV 228

>pdb|3NR2|A Chain A, Crystal Structure Of Caspase-6 Zymogen Length = 294

Iteration: 1
 Score =  120 bits (302), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 70/179 (39%), Positives = 97/179 (54%), Gaps = 13/179 (7%)
Query: 14  ADYYRMDHKHRGLALIFNHEHF-DSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEF 72
           A+ Y+MDH+ RG+ALIFNHE F     L  R GT AD +NL     +LGF VK ++D + 
Sbjct: 27  AEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFNDLKV 86
Query: 73  KVIQNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAG 132
           + +   I E +   + DADCFV   L+HGE   ++A D   + + L   F  D C +L G
Sbjct: 87  EELLLKIHEVSTVSHADADCFVCVFLSHGEGNHIYAYDAKIEIQTLTGLFKGDKCHSLVG 146
Query: 133 KPKLFFIQACQGDKLDAGVTIRTQVDGH------------PSNTYSIPLHADFLMAYST 179
           KPK+F IQA +G++ D  V     VD               ++ Y++P  ADFLM YS 
Sbjct: 147 KPKIFIIQAARGNQHDVPVIPLDVVDNQTEKLDTNITEVDAASVYTLPAGADFLMCYSV 205

>pdb|3NR2|A Chain A, Crystal Structure Of Caspase-6 Zymogen Length = 294

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 58/121 (47%), Gaps = 17/121 (14%)
Query: 251 SHTNGSAVGKDEGDVLGFNFGRTRMKGPVAKSTVEKDADYYRMDHKHRGLALIFNHEH-F 309
           S T G  +G+D        F +  M  P         A+ Y+MDH+ RG+ALIFNHE  F
Sbjct: 3   SMTGGQQMGRDPNSA----FYKREMFDP---------AEKYKMDHRRRGIALIFNHERFF 49
Query: 310 DSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVIQNAIDEGPVAKSTVEKDADY 369
               L  R GT AD +NL     +LGF VK ++D + + +   I E     +    DAD 
Sbjct: 50  WHLTLPERRGTCADRDNLTRRFSDLGFEVKCFNDLKVEELLLKIHE---VSTVSHADADC 106
Query: 370 Y 370
           +
Sbjct: 107 F 107

>pdb|3NR2|A Chain A, Crystal Structure Of Caspase-6 Zymogen Length = 294

Iteration: 1
 Score = 55.5 bits (132), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 367 ADYYRMDHKHRGLALIFNHEH-FDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEF 425
           A+ Y+MDH+ RG+ALIFNHE  F    L  R GT AD +NL     +LGF VK ++D + 
Sbjct: 27  AEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFNDLKV 86
Query: 426 KVIQNAIDE 434
           + +   I E
Sbjct: 87  EELLLKIHE 95

>pdb|4EJF|A Chain A, Allosteric Peptides That Bind To A Caspase Zymogen And Mediate Caspase Tetramerization Length = 279

Iteration: 1
 Score =  120 bits (300), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 70/179 (39%), Positives = 97/179 (54%), Gaps = 13/179 (7%)
Query: 14  ADYYRMDHKHRGLALIFNHEHF-DSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEF 72
           A+ Y+MDH+ RG+ALIFNHE F     L  R GT AD +NL     +LGF VK ++D + 
Sbjct: 14  AEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFNDLKA 73
Query: 73  KVIQNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAG 132
           + +   I E +   + DADCFV   L+HGE   ++A D   + + L   F  D C +L G
Sbjct: 74  EELLLKIHEVSTVSHADADCFVCVFLSHGEGNHIYAYDAKIEIQTLTGLFKGDKCHSLVG 133
Query: 133 KPKLFFIQACQGDKLDAGVTIRTQVDGH------------PSNTYSIPLHADFLMAYST 179
           KPK+F IQA +G++ D  V     VD               ++ Y++P  ADFLM YS 
Sbjct: 134 KPKIFIIQAARGNQHDVPVIPLDVVDNQTEKLDTNITEVDAASVYTLPAGADFLMCYSV 192

>pdb|4EJF|A Chain A, Allosteric Peptides That Bind To A Caspase Zymogen And Mediate Caspase Tetramerization Length = 279

Iteration: 1
 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 29/57 (50%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 288 ADYYRMDHKHRGLALIFNHEH-FDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHD 343
           A+ Y+MDH+ RG+ALIFNHE  F    L  R GT AD +NL     +LGF VK ++D
Sbjct: 14  AEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFND 70

>pdb|4EJF|A Chain A, Allosteric Peptides That Bind To A Caspase Zymogen And Mediate Caspase Tetramerization Length = 279

Iteration: 1
 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 29/57 (50%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 367 ADYYRMDHKHRGLALIFNHEH-FDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHD 422
           A+ Y+MDH+ RG+ALIFNHE  F    L  R GT AD +NL     +LGF VK ++D
Sbjct: 14  AEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFND 70

>pdb|1SHL|A Chain A, Caspase-7 In Complex With Fica Allosteric Inhibitor Length = 245

Iteration: 1
 Score =  119 bits (298), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 66/165 (40%), Positives = 97/165 (58%), Gaps = 9/165 (5%)
Query: 17  YRMDHKHRGLALIFNHEHFDS-PHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVI 75
           Y M+ +  G  +I N+++FD    +  R GT  D E L+    +LGF V  Y+D     +
Sbjct: 4   YNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVIVYNDCSCAKM 63
Query: 76  QNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAGKPK 135
           Q+ + +A+E+D+T+A CF   +L+HGE+ +++ KD     K+L + F  D C TL  KPK
Sbjct: 64  QDLLKKASEEDHTNAACFACILLSHGEENVIYGKDGVTPIKDLTAHFRGDRCKTLLEKPK 123
Query: 136 LFFIQACQGDKLDAGVTIRTQVDGHPSNTYSIPLHADFLMAYSTI 180
           LFFIQAC+G +L  G+    Q D      Y IP+ ADFL AYST+
Sbjct: 124 LFFIQACRGTELADGI----QADSR----YKIPVEADFLFAYSTV 160

>pdb|4EHA|A Chain A, Allosteric Modulation Of Caspase-3 Through Mutagenesis Length = 277

Iteration: 1
 Score =  119 bits (297), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 63/164 (38%), Positives = 97/164 (59%), Gaps = 2/164 (1%)
Query: 17  YRMDHKHRGLALIFNHEHF-DSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVI 75
           Y+MD+   GL +I N+++F  S  + SR+GT  D  NL  T  NL + V+  +D   + I
Sbjct: 37  YKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEI 96
Query: 76  QNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAGKPK 135
              + + +++D++    FV  +L+HGE+GI+   + P   K + + F  D C +L GKPK
Sbjct: 97  VELMRDVSKEDHSKRSSFVCVLLSHGEEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPK 156
Query: 136 LFFIQACQGDKLDAGVTIRTQVDGHPSNTYSIPLHADFLMAYST 179
           LF IQAC+G +LD G+   + VD   +  + IP+ ADFL AYST
Sbjct: 157 LFIIQACRGTELDCGIETDSGVDDDMA-CHKIPVEADFLYAYST 199

>pdb|3H0E|A Chain A, 3,4-Dihydropyrimido(1,2-A)indol-10(2h)-Ones As Potent Non- Peptidic Inhibitors Of Caspase-3 Length = 255

Iteration: 1
 Score =  118 bits (296), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 63/164 (38%), Positives = 97/164 (59%), Gaps = 2/164 (1%)
Query: 17  YRMDHKHRGLALIFNHEHF-DSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVI 75
           Y+MD+   GL +I N+++F  S  + SR+GT  D  NL  T  NL + V+  +D   + I
Sbjct: 9   YKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEI 68
Query: 76  QNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAGKPK 135
              + + +++D++    FV  +L+HGE+GI+   + P   K + + F  D C +L GKPK
Sbjct: 69  VELMRDVSKEDHSKRSSFVCVLLSHGEEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPK 128
Query: 136 LFFIQACQGDKLDAGVTIRTQVDGHPSNTYSIPLHADFLMAYST 179
           LF IQAC+G +LD G+   + VD   +  + IP+ ADFL AYST
Sbjct: 129 LFIIQACRGTELDCGIETDSGVDDDMA-CHKIPVEADFLYAYST 171

>pdb|2J32|A Chain A, The Role Of Loop Bundle Hydrogen Bonds In The Maturation And Activity Of(Pro)caspase-3 Length = 250

Iteration: 1
 Score =  118 bits (296), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 63/164 (38%), Positives = 97/164 (59%), Gaps = 2/164 (1%)
Query: 17  YRMDHKHRGLALIFNHEHF-DSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVI 75
           Y+MD+   GL +I N+++F  S  + SR+GT  D  NL  T  NL + V+  +D   + I
Sbjct: 9   YKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEI 68
Query: 76  QNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAGKPK 135
              + + +++D++    FV  +L+HGE+GI+   + P   K + + F  D C +L GKPK
Sbjct: 69  VELMRDVSKEDHSKRSSFVCVLLSHGEEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPK 128
Query: 136 LFFIQACQGDKLDAGVTIRTQVDGHPSNTYSIPLHADFLMAYST 179
           LF IQAC+G +LD G+   + VD   +  + IP+ ADFL AYST
Sbjct: 129 LFIIQACRGTELDCGIATDSGVDDDMA-CHKIPVEADFLYAYST 171

>pdb|3PD0|A Chain A, Caspase-3 E246a Length = 250

Iteration: 1
 Score =  118 bits (296), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 63/164 (38%), Positives = 98/164 (59%), Gaps = 2/164 (1%)
Query: 17  YRMDHKHRGLALIFNHEHF-DSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVI 75
           Y+MD+   GL +I N+++F  S  + SR+GT  D  NL  T  NL + V+  +D   + I
Sbjct: 9   YKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEI 68
Query: 76  QNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAGKPK 135
              + + +++D++    FV  +L+HGE+GI+   + P   K + + F  D C +L GKPK
Sbjct: 69  VELMRDVSKEDHSKRSSFVCVLLSHGEEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPK 128
Query: 136 LFFIQACQGDKLDAGVTIRTQVDGHPSNTYSIPLHADFLMAYST 179
           LF IQAC+G +LD+G+   + VD   +  + IP+ ADFL AYST
Sbjct: 129 LFIIQACRGTELDSGIETDSGVDDDMA-CHKIPVEADFLYAYST 171

>pdb|3ITN|A Chain A, Crystal Structure Of Pseudo-Activated Procaspase-3 Length = 250

Iteration: 1
 Score =  118 bits (296), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 63/164 (38%), Positives = 97/164 (59%), Gaps = 2/164 (1%)
Query: 17  YRMDHKHRGLALIFNHEHF-DSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVI 75
           Y+MD+   GL +I N+++F  S  + SR+GT  D  NL  T  NL + V+  +D   + I
Sbjct: 9   YKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEI 68
Query: 76  QNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAGKPK 135
              + + +++D++    FV  +L+HGE+GI+   + P   K + + F  D C +L GKPK
Sbjct: 69  VELMRDVSKEDHSKRSSFVCVLLSHGEEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPK 128
Query: 136 LFFIQACQGDKLDAGVTIRTQVDGHPSNTYSIPLHADFLMAYST 179
           LF IQAC+G +LD G+   + VD   +  + IP+ ADFL AYST
Sbjct: 129 LFIIQACRGTELDCGIETDSGVDDDMA-CHKIPVEADFLYAYST 171

>pdb|1CP3|A Chain A, Crystal Structure Of The Complex Of Apopain With The Tetrapeptide Inhibitor Ace-Dvad-Fmc Length = 277

Iteration: 1
 Score =  118 bits (296), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 63/164 (38%), Positives = 97/164 (59%), Gaps = 2/164 (1%)
Query: 17  YRMDHKHRGLALIFNHEHF-DSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVI 75
           Y+MD+   GL +I N+++F  S  + SR+GT  D  NL  T  NL + V+  +D   + I
Sbjct: 37  YKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEI 96
Query: 76  QNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAGKPK 135
              + + +++D++    FV  +L+HGE+GI+   + P   K + + F  D C +L GKPK
Sbjct: 97  VELMRDVSKEDHSKRSSFVCVLLSHGEEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPK 156
Query: 136 LFFIQACQGDKLDAGVTIRTQVDGHPSNTYSIPLHADFLMAYST 179
           LF IQAC+G +LD G+   + VD   +  + IP+ ADFL AYST
Sbjct: 157 LFIIQACRGTELDCGIETDSGVDDDMA-CHKIPVDADFLYAYST 199

>pdb|2J33|A Chain A, The Role Of Loop Bundle Hydrogen Bonds In The Maturation And Activity Of (Pro)caspase-3 Length = 250

Iteration: 1
 Score =  118 bits (295), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 63/164 (38%), Positives = 97/164 (59%), Gaps = 2/164 (1%)
Query: 17  YRMDHKHRGLALIFNHEHF-DSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVI 75
           Y+MD+   GL +I N+++F  S  + SR+GT  D  NL  T  NL + V+  +D   + I
Sbjct: 9   YKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEI 68
Query: 76  QNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAGKPK 135
              + + +++D++    FV  +L+HGE+GI+   + P   K + + F  D C +L GKPK
Sbjct: 69  VELMRDVSKEDHSKRSSFVCVLLSHGEEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPK 128
Query: 136 LFFIQACQGDKLDAGVTIRTQVDGHPSNTYSIPLHADFLMAYST 179
           LF IQAC+G +LD G+   + VD   +  + IP+ ADFL AYST
Sbjct: 129 LFIIQACRGTELDCGIETDSGVDDDMA-CHKIPVEADFLYAYST 171

>pdb|2J30|A Chain A, The Role Of Loop Bundle Hydrogen Bonds In The Maturation And Activity Of (Pro)caspase-3 Length = 250

Iteration: 1
 Score =  118 bits (295), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 63/164 (38%), Positives = 97/164 (59%), Gaps = 2/164 (1%)
Query: 17  YRMDHKHRGLALIFNHEHF-DSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVI 75
           Y+MD+   GL +I N+++F  S  + SR+GT  D  NL  T  NL + V+  +D   + I
Sbjct: 9   YKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEI 68
Query: 76  QNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAGKPK 135
              + + +++D++    FV  +L+HGE+GI+   + P   K + + F  D C +L GKPK
Sbjct: 69  VELMRDVSKEDHSKRSSFVCVLLSHGEEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPK 128
Query: 136 LFFIQACQGDKLDAGVTIRTQVDGHPSNTYSIPLHADFLMAYST 179
           LF IQAC+G +LD G+   + VD   +  + IP+ ADFL AYST
Sbjct: 129 LFIIQACRGTELDCGIETDSGVDDDMA-CHKIPVEADFLYAYST 171

>pdb|3PD1|A Chain A, Caspase-3 K242a Length = 250

Iteration: 1
 Score =  118 bits (295), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 63/164 (38%), Positives = 97/164 (59%), Gaps = 2/164 (1%)
Query: 17  YRMDHKHRGLALIFNHEHF-DSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVI 75
           Y+MD+   GL +I N+++F  S  + SR+GT  D  NL  T  NL + V+  +D   + I
Sbjct: 9   YKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEI 68
Query: 76  QNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAGKPK 135
              + + +++D++    FV  +L+HGE+GI+   + P   K + + F  D C +L GKPK
Sbjct: 69  VELMRDVSKEDHSKRSSFVCVLLSHGEEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPK 128
Query: 136 LFFIQACQGDKLDAGVTIRTQVDGHPSNTYSIPLHADFLMAYST 179
           LF IQAC+G +LD G+   + VD   +  + IP+ ADFL AYST
Sbjct: 129 LFIIQACRGTELDCGIETDSGVDDDMA-CHKIPVEADFLYAYST 171

>pdb|3PCX|A Chain A, Caspase-3 E246a, K242a Double Mutant Length = 250

Iteration: 1
 Score =  118 bits (295), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 63/164 (38%), Positives = 97/164 (59%), Gaps = 2/164 (1%)
Query: 17  YRMDHKHRGLALIFNHEHF-DSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVI 75
           Y+MD+   GL +I N+++F  S  + SR+GT  D  NL  T  NL + V+  +D   + I
Sbjct: 9   YKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEI 68
Query: 76  QNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAGKPK 135
              + + +++D++    FV  +L+HGE+GI+   + P   K + + F  D C +L GKPK
Sbjct: 69  VELMRDVSKEDHSKRSSFVCVLLSHGEEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPK 128
Query: 136 LFFIQACQGDKLDAGVTIRTQVDGHPSNTYSIPLHADFLMAYST 179
           LF IQAC+G +LD G+   + VD   +  + IP+ ADFL AYST
Sbjct: 129 LFIIQACRGTELDCGIETDSGVDDDMA-CHKIPVEADFLYAYST 171

>pdb|3H1P|A Chain A, Mature Caspase-7 I213a With Devd-Cho Inhibitor Bound To Active Site Length = 260

Iteration: 1
 Score =  117 bits (294), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 67/171 (39%), Positives = 98/171 (57%), Gaps = 11/171 (6%)
Query: 17  YRMDHKHRGLALIFNHEHFDS-PHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVI 75
           Y M+ +  G  +I N+++FD    +  R GT  D E L+    +LGF V  Y+D     +
Sbjct: 11  YNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVIVYNDCSCAKM 70
Query: 76  QNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAGKPK 135
           Q+ + +A+E+D+T+A CF   +L+HGE+ +++ KD     K+L + F  D   TL  KPK
Sbjct: 71  QDLLKKASEEDHTNAACFACILLSHGEENVIYGKDGVTPIKDLTAHFRGDRSKTLLEKPK 130
Query: 136 LFFIQACQGDKLDAGVTIRTQVDGHPSN------TYSIPLHADFLMAYSTI 180
           LFFIQAC+G +LD G+    Q D  P N       Y  P+ ADFL AYST+
Sbjct: 131 LFFIQACRGTELDDGI----QADSGPINDTDANPRYKAPVEADFLFAYSTV 177

>pdb|1NMQ|A Chain A, Extendend Tethering: In Situ Assembly Of Inhibitors Length = 249

Iteration: 1
 Score =  117 bits (294), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 63/164 (38%), Positives = 97/164 (59%), Gaps = 2/164 (1%)
Query: 17  YRMDHKHRGLALIFNHEHF-DSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVI 75
           Y+MD+   GL +I N+++F  S  + SR+GT  D  NL  T  NL + V+  +D   + I
Sbjct: 9   YKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEI 68
Query: 76  QNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAGKPK 135
              + + +++D++    FV  +L+HGE+GI+   + P   K + + F  D C +L GKPK
Sbjct: 69  VELMRDVSKEDHSKRSSFVCVLLSHGEEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPK 128
Query: 136 LFFIQACQGDKLDAGVTIRTQVDGHPSNTYSIPLHADFLMAYST 179
           LF IQAC+G +LD G+   + VD   +  + IP+ ADFL AYST
Sbjct: 129 LFIIQACRGTELDCGIETDSGVDDDMA-CHKIPVDADFLYAYST 171

>pdb|1QX3|A Chain A, Conformational Restrictions In The Active Site Of Unliganded Human Caspase-3 Length = 257

Iteration: 1
 Score =  117 bits (294), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 63/164 (38%), Positives = 97/164 (59%), Gaps = 2/164 (1%)
Query: 17  YRMDHKHRGLALIFNHEHF-DSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVI 75
           Y+MD+   GL +I N+++F  S  + SR+GT  D  NL  T  NL + V+  +D   + I
Sbjct: 9   YKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEI 68
Query: 76  QNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAGKPK 135
              + + +++D++    FV  +L+HGE+GI+   + P   K + + F  D C +L GKPK
Sbjct: 69  VELMRDVSKEDHSKRSSFVCVLLSHGEEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPK 128
Query: 136 LFFIQACQGDKLDAGVTIRTQVDGHPSNTYSIPLHADFLMAYST 179
           LF IQAC+G +LD G+   + VD   +  + IP+ ADFL AYST
Sbjct: 129 LFIIQACRGTELDCGIETDSGVDDDMA-CHKIPVDADFLYAYST 171

>pdb|4EHH|A Chain A, Allosteric Modulation Of Caspase-3 Through Mutagenesis Length = 277

Iteration: 1
 Score =  117 bits (294), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 63/164 (38%), Positives = 96/164 (58%), Gaps = 2/164 (1%)
Query: 17  YRMDHKHRGLALIFNHEHF-DSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVI 75
           Y+MD+   GL +I N+++F  S  + SR+GT  D  NL  T  NL + V+  +D   + I
Sbjct: 37  YKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEI 96
Query: 76  QNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAGKPK 135
              + + +++D++    FV  +L+HGE GI+   + P   K + + F  D C +L GKPK
Sbjct: 97  VELMRDVSKEDHSKRSSFVCVLLSHGEAGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPK 156
Query: 136 LFFIQACQGDKLDAGVTIRTQVDGHPSNTYSIPLHADFLMAYST 179
           LF IQAC+G +LD G+   + VD   +  + IP+ ADFL AYST
Sbjct: 157 LFIIQACRGTELDCGIETDSGVDDDMA-CHKIPVEADFLYAYST 199

>pdb|2J31|A Chain A, The Role Of Loop Bundle Hydrogen Bonds In The Maturation And Activity Of(pro)caspase-3 Length = 250

Iteration: 1
 Score =  117 bits (294), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 63/164 (38%), Positives = 96/164 (58%), Gaps = 2/164 (1%)
Query: 17  YRMDHKHRGLALIFNHEHF-DSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVI 75
           Y+MD+   GL +I N+++F  S  + SR+GT  D  NL  T  NL + V+  +D   + I
Sbjct: 9   YKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEI 68
Query: 76  QNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAGKPK 135
              + + +++D++    FV  +L+HGE+GI+   + P   K + + F  D C +L GKPK
Sbjct: 69  VELMRDVSKEDHSKRSSFVCVLLSHGEEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPK 128
Query: 136 LFFIQACQGDKLDAGVTIRTQVDGHPSNTYSIPLHADFLMAYST 179
           LF IQAC+G  LD G+   + VD   +  + IP+ ADFL AYST
Sbjct: 129 LFIIQACRGTALDCGIETDSGVDDDMA-CHKIPVEADFLYAYST 171

>pdb|4EHL|A Chain A, Allosteric Modulation Of Caspase-3 Through Mutagenesis Length = 277

Iteration: 1
 Score =  117 bits (293), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 63/164 (38%), Positives = 96/164 (58%), Gaps = 2/164 (1%)
Query: 17  YRMDHKHRGLALIFNHEHF-DSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVI 75
           Y+MD+   GL +I N+++F  S  + SR+GT  D  NL  T  NL + V+  +D   + I
Sbjct: 37  YKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEI 96
Query: 76  QNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAGKPK 135
              + + +++D++    FV  +L+HGE GI+   + P   K + + F  D C +L GKPK
Sbjct: 97  VELMRDVSKEDHSKRSSFVCVLLSHGEAGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPK 156
Query: 136 LFFIQACQGDKLDAGVTIRTQVDGHPSNTYSIPLHADFLMAYST 179
           LF IQAC+G +LD G+   + VD   +  + IP+ ADFL AYST
Sbjct: 157 LFIIQACRGTELDCGIETDSGVDDDMA-CHKIPVEADFLYAYST 199

>pdb|1K88|A Chain A, Crystal Structure Of Procaspase-7 Length = 253

Iteration: 1
 Score =  117 bits (293), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 67/171 (39%), Positives = 98/171 (57%), Gaps = 11/171 (6%)
Query: 17  YRMDHKHRGLALIFNHEHFDS-PHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVI 75
           Y M+ +  G  +I N+++FD    +  R GT  D E L+    +LGF V  Y+D     +
Sbjct: 10  YNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVIVYNDCSCAKM 69
Query: 76  QNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAGKPK 135
           Q+ + +A+E+D+T+A CF   +L+HGE+ +++ KD     K+L + F    C TL  KPK
Sbjct: 70  QDLLKKASEEDHTNAACFACILLSHGEENVIYGKDGVTPIKDLTAHFRGARCKTLLEKPK 129
Query: 136 LFFIQACQGDKLDAGVTIRTQVDGHPSN------TYSIPLHADFLMAYSTI 180
           LFFIQA +G +LD G+    Q D  P N       Y IP+ ADFL AYST+
Sbjct: 130 LFFIQAARGTELDDGI----QADSGPINDTDANPRYKIPVEADFLFAYSTV 176

>pdb|4EHF|A Chain A, Allosteric Modulation Of Caspase-3 Through Mutagenesis Length = 277

Iteration: 1
 Score =  115 bits (289), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 62/164 (37%), Positives = 96/164 (58%), Gaps = 2/164 (1%)
Query: 17  YRMDHKHRGLALIFNHEHF-DSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVI 75
           Y+MD+   GL +I N+++F  S  + SR+GT  D  NL  T  NL + V+  +D   + I
Sbjct: 37  YKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEI 96
Query: 76  QNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAGKPK 135
              + + +++D++    FV  +L+HGE+GI+   + P   K + + F  D C +L GKPK
Sbjct: 97  VELMRDVSKEDHSKRSSFVCVLLSHGEEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPK 156
Query: 136 LFFIQACQGDKLDAGVTIRTQVDGHPSNTYSIPLHADFLMAYST 179
           LF IQAC+G +LD G+   + VD   +  + IP+ ADFL A ST
Sbjct: 157 LFIIQACRGTELDCGIETDSGVDDDMA-CHKIPVEADFLYACST 199

>pdb|4EHD|A Chain A, Allosteric Modulation Of Caspase-3 Through Mutagenesis Length = 277

Iteration: 1
 Score =  115 bits (289), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 62/164 (37%), Positives = 96/164 (58%), Gaps = 2/164 (1%)
Query: 17  YRMDHKHRGLALIFNHEHF-DSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVI 75
           Y+MD+   GL +I N+++F  S  + SR+GT  D  NL  T  NL + V+  +D   + I
Sbjct: 37  YKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEI 96
Query: 76  QNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAGKPK 135
              + + +++D++    FV  +L+HGE+GI+   + P   K + + F  D C +L GKPK
Sbjct: 97  VELMRDVSKEDHSKRSSFVCVLLSHGEEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPK 156
Query: 136 LFFIQACQGDKLDAGVTIRTQVDGHPSNTYSIPLHADFLMAYST 179
           LF IQAC+G +LD G+   + VD   +  + IP+ ADFL A ST
Sbjct: 157 LFIIQACRGTELDCGIETDSGVDDDMA-CHKIPVEADFLYACST 199

>pdb|4EHK|A Chain A, Allosteric Modulation Of Caspase-3 Through Mutagenesis Length = 277

Iteration: 1
 Score =  114 bits (286), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 62/164 (37%), Positives = 95/164 (57%), Gaps = 2/164 (1%)
Query: 17  YRMDHKHRGLALIFNHEHF-DSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVI 75
           Y+MD+   GL +I N+++F  S  + SR+GT  D  NL  T  NL + V+  +D   + I
Sbjct: 37  YKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEI 96
Query: 76  QNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAGKPK 135
              + + +++D++    FV  +L+HGE GI+   + P   K + + F  D C +L GKPK
Sbjct: 97  VELMRDVSKEDHSKRSSFVCVLLSHGEAGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPK 156
Query: 136 LFFIQACQGDKLDAGVTIRTQVDGHPSNTYSIPLHADFLMAYST 179
           LF IQAC+G +LD G+   + VD   +  + IP+ ADFL A ST
Sbjct: 157 LFIIQACRGTELDCGIETDSGVDDDMA-CHKIPVEADFLYACST 199

>pdb|4EHN|A Chain A, Allosteric Modulation Of Caspase-3 Through Mutagenesis Length = 277

Iteration: 1
 Score =  114 bits (286), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 62/164 (37%), Positives = 95/164 (57%), Gaps = 2/164 (1%)
Query: 17  YRMDHKHRGLALIFNHEHF-DSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVI 75
           Y+MD+   GL +I N+++F  S  + SR+GT  D  NL  T  NL + V+  +D   + I
Sbjct: 37  YKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEI 96
Query: 76  QNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAGKPK 135
              + + +++D++    FV  +L+HGE GI+   + P   K + + F  D C +L GKPK
Sbjct: 97  VELMRDVSKEDHSKRSSFVCVLLSHGEAGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPK 156
Query: 136 LFFIQACQGDKLDAGVTIRTQVDGHPSNTYSIPLHADFLMAYST 179
           LF IQAC+G +LD G+   + VD   +  + IP+ ADFL A ST
Sbjct: 157 LFIIQACRGTELDCGIETDSGVDDDMA-CHKIPVEADFLYACST 199

>pdb|3DEH|A Chain A, Crystal Structures Of Caspase-3 With Bound Isoquinoline-1,3, 4-Trione Derivative Inhibitors Length = 249

Iteration: 1
 Score =  113 bits (282), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 62/164 (37%), Positives = 96/164 (58%), Gaps = 2/164 (1%)
Query: 17  YRMDHKHRGLALIFNHEHF-DSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVI 75
           Y+MD+   GL +I N+++F  S  + SR+GT  D  NL  T  NL + V+  +D   + I
Sbjct: 9   YKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEI 68
Query: 76  QNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAGKPK 135
              + + +++D++    FV  +L+HGE+GI+   + P   K + + F  D C +L GKPK
Sbjct: 69  VELMRDVSKEDHSKRSSFVCVLLSHGEEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPK 128
Query: 136 LFFIQACQGDKLDAGVTIRTQVDGHPSNTYSIPLHADFLMAYST 179
           LF IQA +G +LD G+   + VD   +  + IP+ ADFL AYST
Sbjct: 129 LFIIQAXRGTELDCGIETDSGVDDDMA-CHKIPVDADFLYAYST 171

>pdb|3P45|A Chain A, Crystal Structure Of Apo-Caspase-6 At Physiological Ph Length = 179

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/57 (50%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 288 ADYYRMDHKHRGLALIFNHEH-FDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHD 343
           A+ Y+MDH+ RG+ALIFNHE  F    L  R GT AD +NL     +LGF VK ++D
Sbjct: 34  AEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFND 90

>pdb|3P45|A Chain A, Crystal Structure Of Apo-Caspase-6 At Physiological Ph Length = 179

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/57 (50%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 367 ADYYRMDHKHRGLALIFNHEH-FDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHD 422
           A+ Y+MDH+ RG+ALIFNHE  F    L  R GT AD +NL     +LGF VK ++D
Sbjct: 34  AEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFND 90

>pdb|1I4E|B Chain B, Crystal Structure Of The Caspase-8P35 COMPLEX Length = 258

Iteration: 1
 Score =  112 bits (280), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 65/184 (35%), Positives = 94/184 (51%), Gaps = 17/184 (9%)
Query: 17  YRMDHKHRGLALIFNHEHFDSPH--------LKSRAGTGADFENLYTTLVNLGFVVKPYH 68
           Y+M  K RG  LI N+ +F            ++ R GT  D   L TT   L F +KP+H
Sbjct: 5   YQMKSKPRGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFEELHFEIKPHH 64
Query: 69  DPEFKVIQNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKP-KNLWSKFTADNC 127
           D   + I   +      D+++ DCF+  +L+HG+ GI++  D    P   L S+FT   C
Sbjct: 65  DCTVEQIYEILKIYQLMDHSNMDCFICCILSHGDKGIIYGTDGQEAPIYELTSQFTGLKC 124
Query: 128 LTLAGKPKLFFIQACQGDKLDAGVTIRTQVDGHP--------SNTYSIPLHADFLMAYST 179
            +LAGKPK+FFIQACQGD    G+ + T  +  P          T  IP  ADFL+  +T
Sbjct: 125 PSLAGKPKVFFIQACQGDNYQKGIPVETDSEEQPYLEMDLSSPQTRYIPDEADFLLGMAT 184
Query: 180 ISDS 183
           +++ 
Sbjct: 185 VNNC 188

>pdb|3P4U|A Chain A, Crystal Structure Of Active Caspase-6 In Complex With Ac-Veid-Cho Inhibitor Length = 157

Iteration: 1
 Score =  111 bits (278), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 62/146 (42%), Positives = 85/146 (58%), Gaps = 1/146 (0%)
Query: 14  ADYYRMDHKHRGLALIFNHEHF-DSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEF 72
           A+ Y+MDH+ RG+ALIFNHE F     L  R GT AD +NL     +LGF VK ++D + 
Sbjct: 12  AEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTXADRDNLTRRFSDLGFEVKXFNDLKA 71
Query: 73  KVIQNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAG 132
           + +   I E +   + DADCFV   L+HGE   ++A D   + + L   F  D C +L G
Sbjct: 72  EELLLKIHEVSTVSHADADCFVCVFLSHGEGNHIYAYDAKIEIQTLTGLFKGDKCHSLVG 131
Query: 133 KPKLFFIQACQGDKLDAGVTIRTQVD 158
           KPK+F IQAC+G++ D  V     VD
Sbjct: 132 KPKIFIIQACRGNQHDVPVIPLDVVD 157

>pdb|3P4U|A Chain A, Crystal Structure Of Active Caspase-6 In Complex With Ac-Veid-Cho Inhibitor Length = 157

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/57 (50%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 288 ADYYRMDHKHRGLALIFNHEH-FDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHD 343
           A+ Y+MDH+ RG+ALIFNHE  F    L  R GT AD +NL     +LGF VK ++D
Sbjct: 12  AEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTXADRDNLTRRFSDLGFEVKXFND 68

>pdb|3P4U|A Chain A, Crystal Structure Of Active Caspase-6 In Complex With Ac-Veid-Cho Inhibitor Length = 157

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/57 (50%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 367 ADYYRMDHKHRGLALIFNHEH-FDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHD 422
           A+ Y+MDH+ RG+ALIFNHE  F    L  R GT AD +NL     +LGF VK ++D
Sbjct: 12  AEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTXADRDNLTRRFSDLGFEVKXFND 68

>pdb|3QNW|A Chain A, Caspase-6 In Complex With Z-Vad-Fmk Inhibitor Length = 156

Iteration: 1
 Score =  111 bits (278), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 62/146 (42%), Positives = 85/146 (58%), Gaps = 1/146 (0%)
Query: 14  ADYYRMDHKHRGLALIFNHEHF-DSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEF 72
           A+ Y+MDH+ RG+ALIFNHE F     L  R GT AD +NL     +LGF VK ++D + 
Sbjct: 11  AEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFNDLKA 70
Query: 73  KVIQNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAG 132
           + +   I E +   + DADCFV   L+HGE   ++A D   + + L   F  D C +L G
Sbjct: 71  EELLLKIHEVSTVSHADADCFVCVFLSHGEGNHIYAYDAKIEIQTLTGLFKGDKCHSLVG 130
Query: 133 KPKLFFIQACQGDKLDAGVTIRTQVD 158
           KPK+F IQAC+G++ D  V     VD
Sbjct: 131 KPKIFIIQACRGNQHDVPVIPLDVVD 156

>pdb|3QNW|A Chain A, Caspase-6 In Complex With Z-Vad-Fmk Inhibitor Length = 156

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/57 (50%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 288 ADYYRMDHKHRGLALIFNHEH-FDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHD 343
           A+ Y+MDH+ RG+ALIFNHE  F    L  R GT AD +NL     +LGF VK ++D
Sbjct: 11  AEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFND 67

>pdb|3QNW|A Chain A, Caspase-6 In Complex With Z-Vad-Fmk Inhibitor Length = 156

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/57 (50%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 367 ADYYRMDHKHRGLALIFNHEH-FDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHD 422
           A+ Y+MDH+ RG+ALIFNHE  F    L  R GT AD +NL     +LGF VK ++D
Sbjct: 11  AEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFND 67

>pdb|3H11|B Chain B, Zymogen Caspase-8:c-Flipl Protease Domain Complex Length = 271

Iteration: 1
 Score =  109 bits (272), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 64/184 (34%), Positives = 93/184 (50%), Gaps = 17/184 (9%)
Query: 17  YRMDHKHRGLALIFNHEHFDSPH--------LKSRAGTGADFENLYTTLVNLGFVVKPYH 68
           Y+M  K RG  LI N+ +F            ++ R GT  D   L TT   L F +KP+ 
Sbjct: 10  YQMKSKPRGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFEELHFEIKPHD 69
Query: 69  DPEFKVIQNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKP-KNLWSKFTADNC 127
           D   + I   +      D+++ DCF+  +L+HG+ GI++  D    P   L S+FT   C
Sbjct: 70  DCTVEQIYEILKIYQLMDHSNMDCFICCILSHGDKGIIYGTDGQEAPIYELTSQFTGLKC 129
Query: 128 LTLAGKPKLFFIQACQGDKLDAGVTIRTQVDGHP--------SNTYSIPLHADFLMAYST 179
            +LAGKPK+FFIQACQGD    G+ + T  +  P          T  IP  ADFL+  +T
Sbjct: 130 PSLAGKPKVFFIQACQGDNYQKGIPVETASEEQPYLEMALSSPQTRYIPDEADFLLGMAT 189
Query: 180 ISDS 183
           +++ 
Sbjct: 190 VNNC 193

>pdb|2QL5|A Chain A, Crystal Structure Of Caspase-7 With Inhibitor Ac-Dmqd-Cho Length = 173

Iteration: 1
 Score =  106 bits (265), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 57/147 (38%), Positives = 89/147 (60%), Gaps = 2/147 (1%)
Query: 7   KSTVEKDADY-YRMDHKHRGLALIFNHEHFDS-PHLKSRAGTGADFENLYTTLVNLGFVV 64
           K+T ++   Y Y M+ +  G  +I N+++FD    +  R GT  D E L+    +LGF V
Sbjct: 26  KTTRDRVPTYQYNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDV 85
Query: 65  KPYHDPEFKVIQNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTA 124
             Y+D     +Q+ + +A+E+D+T+A CF   +L+HGE+ +++ KD     K+L + F  
Sbjct: 86  IVYNDCSCAKMQDLLKKASEEDHTNAACFACILLSHGEENVIYGKDGVTPIKDLTAHFRG 145
Query: 125 DNCLTLAGKPKLFFIQACQGDKLDAGV 151
           D C TL  KPKLFFIQAC+G +LD G+
Sbjct: 146 DRCKTLLEKPKLFFIQACRGTELDDGI 172

>pdb|2K7Z|A Chain A, Solution Structure Of The Catalytic Domain Of Procaspase-8 Length = 266

Iteration: 1
 Score =  105 bits (262), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 63/184 (34%), Positives = 92/184 (50%), Gaps = 17/184 (9%)
Query: 17  YRMDHKHRGLALIFNHEHFDSPH--------LKSRAGTGADFENLYTTLVNLGFVVKPYH 68
           Y+M  K RG  LI N+ +F            ++ R GT  D   L TT   L F +KP+ 
Sbjct: 13  YQMKSKPRGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFEELHFEIKPHD 72
Query: 69  DPEFKVIQNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKP-KNLWSKFTADNC 127
           D   + I   +      D+++ DCF+  +L+HG+ GI++  D    P   L S+FT   C
Sbjct: 73  DCTVEQIYEILKIYQLMDHSNMDCFICCILSHGDKGIIYGTDGQEAPIYELTSQFTGLKC 132
Query: 128 LTLAGKPKLFFIQACQGDKLDAGVTIRTQVDGHP--------SNTYSIPLHADFLMAYST 179
            +LAGKPK+FFIQA QGD    G+ + T  +  P          T  IP  ADFL+  +T
Sbjct: 133 PSLAGKPKVFFIQAAQGDNYQKGIPVETDSEEQPYLEMDLSSPQTRYIPDEADFLLGMAT 192
Query: 180 ISDS 183
           +++ 
Sbjct: 193 VNNC 196

>pdb|1I51|A Chain A, Crystal Structure Of Caspase-7 Complexed With Xiap Length = 148

Iteration: 1
 Score =  102 bits (255), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 53/136 (38%), Positives = 82/136 (60%), Gaps = 1/136 (0%)
Query: 17  YRMDHKHRGLALIFNHEHFDS-PHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVI 75
           Y M+ +  G  +I N+++FD    +  R GT  D E L+    +LGF V  Y+D     +
Sbjct: 10  YNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVIVYNDCSCAKM 69
Query: 76  QNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAGKPK 135
           Q+ + +A+E+D+T+A CF   +L+HGE+ +++ KD     K+L + F    C TL  KPK
Sbjct: 70  QDLLKKASEEDHTNAACFACILLSHGEENVIYGKDGVTPIKDLTAHFRGARCKTLLEKPK 129
Query: 136 LFFIQACQGDKLDAGV 151
           LFFIQAC+G +LD G+
Sbjct: 130 LFFIQACRGTELDDGI 145

>pdb|1QDU|A Chain A, Crystal Structure Of The Complex Of Caspase-8 With The Tripeptide Ketone Inhibitor Zevd-Dcbmk Length = 153

Iteration: 1
 Score =  102 bits (253), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 56/148 (37%), Positives = 79/148 (53%), Gaps = 9/148 (6%)
Query: 17  YRMDHKHRGLALIFNHEHFDSPH--------LKSRAGTGADFENLYTTLVNLGFVVKPYH 68
           Y+M  K RG  LI N+ +F            ++ R GT  D   L TT   L F +KP+H
Sbjct: 5   YQMKSKPRGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFEELHFEIKPHH 64
Query: 69  DPEFKVIQNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKP-KNLWSKFTADNC 127
           D   + I   +      D+++ DCF+  +L+HG+ GI++  D    P   L S+FT   C
Sbjct: 65  DCTVEQIYEILKIYQLMDHSNMDCFICCILSHGDKGIIYGTDGQEAPIYELTSQFTGLKC 124
Query: 128 LTLAGKPKLFFIQACQGDKLDAGVTIRT 155
            +LAGKPK+FFIQACQGD    G+ + T
Sbjct: 125 PSLAGKPKVFFIQACQGDNYQKGIPVET 152

>pdb|1I3O|A Chain A, Crystal Structure Of The Complex Of Xiap-Bir2 And Caspase 3 Length = 175

Iteration: 1
 Score =  100 bits (250), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 50/136 (36%), Positives = 80/136 (58%), Gaps = 1/136 (0%)
Query: 17  YRMDHKHRGLALIFNHEHF-DSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVI 75
           Y+MD+   GL +I N+++F  S  + SR+GT  D  NL  T  NL + V+  +D   + I
Sbjct: 37  YKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEI 96
Query: 76  QNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAGKPK 135
              + + +++D++    FV  +L+HGE+GI+   + P   K + + F  D C +L GKPK
Sbjct: 97  VELMRDVSKEDHSKRSSFVCVLLSHGEEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPK 156
Query: 136 LFFIQACQGDKLDAGV 151
           LF IQA +G +LD G+
Sbjct: 157 LFIIQAARGTELDCGI 172

>pdb|1NME|A Chain A, Structure Of Casp-3 With Tethered Salicylate Length = 146

Iteration: 1
 Score =  100 bits (248), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 51/136 (37%), Positives = 81/136 (59%), Gaps = 1/136 (0%)
Query: 17  YRMDHKHRGLALIFNHEHF-DSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVI 75
           Y+MD+   GL +I N+++F  S  + SR+GT  D  NL  T  NL + V+  +D   + I
Sbjct: 9   YKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEI 68
Query: 76  QNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAGKPK 135
              + + +++D++    FV  +L+HGE+GI+   + P   K + + F  D C +L GKPK
Sbjct: 69  VELMRDVSKEDHSKRSSFVCVLLSHGEEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPK 128
Query: 136 LFFIQACQGDKLDAGV 151
           LF IQAC+G +LD G+
Sbjct: 129 LFIIQACRGTELDCGI 144

>pdb|1PAU|A Chain A, Crystal Structure Of The Complex Of Apopain With The Tetrapeptide Aldehyde Inhibitor Ac-Devd-Cho Length = 147

Iteration: 1
 Score = 99.4 bits (246), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 51/136 (37%), Positives = 81/136 (59%), Gaps = 1/136 (0%)
Query: 17  YRMDHKHRGLALIFNHEHF-DSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVI 75
           Y+MD+   GL +I N+++F  S  + SR+GT  D  NL  T  NL + V+  +D   + I
Sbjct: 9   YKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEI 68
Query: 76  QNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAGKPK 135
              + + +++D++    FV  +L+HGE+GI+   + P   K + + F  D C +L GKPK
Sbjct: 69  VELMRDVSKEDHSKRSSFVCVLLSHGEEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPK 128
Query: 136 LFFIQACQGDKLDAGV 151
           LF IQAC+G +LD G+
Sbjct: 129 LFIIQACRGTELDCGI 144

>pdb|1QTN|A Chain A, Crystal Structure Of The Complex Of Caspase-8 With The Tetrapeptide Inhibitor Ace-Ietd-Aldehyde Length = 164

Iteration: 1
 Score = 99.0 bits (245), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 55/148 (37%), Positives = 78/148 (52%), Gaps = 9/148 (6%)
Query: 17  YRMDHKHRGLALIFNHEHFDSPH--------LKSRAGTGADFENLYTTLVNLGFVVKPYH 68
           Y+M  K RG  LI N+ +F            ++ R GT  D   L TT   L F +KP+ 
Sbjct: 16  YQMKSKPRGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFEELHFEIKPHD 75
Query: 69  DPEFKVIQNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKP-KNLWSKFTADNC 127
           D   + I   +      D+++ DCF+  +L+HG+ GI++  D    P   L S+FT   C
Sbjct: 76  DCTVEQIYEILKIYQLMDHSNMDCFICCILSHGDKGIIYGTDGQEAPIYELTSQFTGLKC 135
Query: 128 LTLAGKPKLFFIQACQGDKLDAGVTIRT 155
            +LAGKPK+FFIQACQGD    G+ + T
Sbjct: 136 PSLAGKPKVFFIQACQGDNYQKGIPVET 163

>pdb|2C2Z|A Chain A, Crystal Structure Of Caspase-8 In Complex With Aza-Peptide Michael Acceptor Inhibitor Length = 159

Iteration: 1
 Score = 98.6 bits (244), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 55/148 (37%), Positives = 78/148 (52%), Gaps = 9/148 (6%)
Query: 17  YRMDHKHRGLALIFNHEHFDSPH--------LKSRAGTGADFENLYTTLVNLGFVVKPYH 68
           Y+M  K RG  LI N+ +F            ++ R GT  D   L TT   L F +KP+ 
Sbjct: 11  YQMKSKPRGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFEELHFEIKPHD 70
Query: 69  DPEFKVIQNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKP-KNLWSKFTADNC 127
           D   + I   +      D+++ DCF+  +L+HG+ GI++  D    P   L S+FT   C
Sbjct: 71  DCTVEQIYEILKIYQLMDHSNMDCFICCILSHGDKGIIYGTDGQEAPIYELTSQFTGLKC 130
Query: 128 LTLAGKPKLFFIQACQGDKLDAGVTIRT 155
            +LAGKPK+FFIQACQGD    G+ + T
Sbjct: 131 PSLAGKPKVFFIQACQGDNYQKGIPVET 158

>pdb|4DCP|A Chain A, Crystal Structure Of Caspase 3, L168f Mutant Length = 147

Iteration: 1
 Score = 97.8 bits (242), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 50/136 (36%), Positives = 80/136 (58%), Gaps = 1/136 (0%)
Query: 17  YRMDHKHRGLALIFNHEHF-DSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVI 75
           Y+MD+   GL +I N+++F  S  + SR+GT  D  NL  T  NL + V+  +D   + I
Sbjct: 9   YKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEI 68
Query: 76  QNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAGKPK 135
              + + +++D++    FV  +L+HGE+GI+   + P   K + + F  D C +L GKPK
Sbjct: 69  VELMRDVSKEDHSKRSSFVCVLLSHGEEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPK 128
Query: 136 LFFIQACQGDKLDAGV 151
           LF IQAC+G + D G+
Sbjct: 129 LFIIQACRGTEFDCGI 144

>pdb|4DCO|A Chain A, Crystal Structure Of Caspase 3, L168y Mutant Length = 147

Iteration: 1
 Score = 97.1 bits (240), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 50/136 (36%), Positives = 80/136 (58%), Gaps = 1/136 (0%)
Query: 17  YRMDHKHRGLALIFNHEHF-DSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVI 75
           Y+MD+   GL +I N+++F  S  + SR+GT  D  NL  T  NL + V+  +D   + I
Sbjct: 9   YKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEI 68
Query: 76  QNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAGKPK 135
              + + +++D++    FV  +L+HGE+GI+   + P   K + + F  D C +L GKPK
Sbjct: 69  VELMRDVSKEDHSKRSSFVCVLLSHGEEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPK 128
Query: 136 LFFIQACQGDKLDAGV 151
           LF IQAC+G + D G+
Sbjct: 129 LFIIQACRGTEYDCGI 144

>pdb|4DCJ|A Chain A, Crystal Structure Of Caspase 3, L168d Mutant Length = 147

Iteration: 1
 Score = 95.9 bits (237), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 50/136 (36%), Positives = 80/136 (58%), Gaps = 1/136 (0%)
Query: 17  YRMDHKHRGLALIFNHEHF-DSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVI 75
           Y+MD+   GL +I N+++F  S  + SR+GT  D  NL  T  NL + V+  +D   + I
Sbjct: 9   YKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEI 68
Query: 76  QNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAGKPK 135
              + + +++D++    FV  +L+HGE+GI+   + P   K + + F  D C +L GKPK
Sbjct: 69  VELMRDVSKEDHSKRSSFVCVLLSHGEEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPK 128
Query: 136 LFFIQACQGDKLDAGV 151
           LF IQAC+G + D G+
Sbjct: 129 LFIIQACRGTEDDCGI 144

>pdb|2XZD|A Chain A, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 149

Iteration: 1
 Score = 94.7 bits (234), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 50/136 (36%), Positives = 80/136 (58%), Gaps = 1/136 (0%)
Query: 17  YRMDHKHRGLALIFNHEHF-DSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVI 75
           Y+MD+   GL +I N+++F  S  + SR+GT  D  NL  T  NL + V+  +D   + I
Sbjct: 11  YKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEI 70
Query: 76  QNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAGKPK 135
              + + +++D++    FV  +L+HGE+GI+   + P   K + + F  D C +L GKPK
Sbjct: 71  VELMRDVSKEDHSKRSSFVCVLLSHGEEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPK 130
Query: 136 LFFIQACQGDKLDAGV 151
           LF IQA +G +LD G+
Sbjct: 131 LFIIQAXRGTELDCGI 146

>pdb|1JXQ|A Chain A, Structure Of Cleaved, Card Domain Deleted Caspase-9 Length = 284

Iteration: 1
 Score = 75.1 bits (183), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 51/160 (31%), Positives = 81/160 (50%), Gaps = 10/160 (6%)
Query: 6   AKSTVEKDADY-YRMDHKHRGLALIFNHEHF-DSPHLKSRAGTGADFENLYTTLVNLGFV 63
           A  ++  +AD  Y +  +  G  LI N+ +F     L++R G+  D E L     +L F+
Sbjct: 3   ALESLRGNADLAYILSMEPCGHCLIINNVNFCRESGLRTRTGSNIDCEKLRRRFSSLHFM 62
Query: 64  VKPYHDPEFKVIQNAIDEAAEQDYTDADCFVMAVLTHGED-------GILHAKD-VPYKP 115
           V+   D   K +  A+ E A QD+   DC V+ +L+HG         G ++  D  P   
Sbjct: 63  VEVKGDLTAKKMVLALLELARQDHGALDCCVVVILSHGCQASHLQFPGAVYGTDGCPVSV 122
Query: 116 KNLWSKFTADNCLTLAGKPKLFFIQACQGDKLDAGVTIRT 155
           + + + F   +C +L GKPKLFFIQAC G++ D G  + +
Sbjct: 123 EKIVNIFNGTSCPSLGGKPKLFFIQACGGEQKDHGFEVAS 162

>pdb|1NW9|B Chain B, Structure Of Caspase-9 In An Inhibitory Complex With Xiap- Bir3 Length = 277

Iteration: 1
 Score = 74.7 bits (182), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 51/160 (31%), Positives = 81/160 (50%), Gaps = 10/160 (6%)
Query: 6   AKSTVEKDADY-YRMDHKHRGLALIFNHEHF-DSPHLKSRAGTGADFENLYTTLVNLGFV 63
           A  ++  +AD  Y +  +  G  LI N+ +F     L++R G+  D E L     +L F+
Sbjct: 2   ALESLRGNADLAYILSMEPCGHCLIINNVNFCRESGLRTRTGSNIDCEKLRRRFSSLHFM 61
Query: 64  VKPYHDPEFKVIQNAIDEAAEQDYTDADCFVMAVLTHGED-------GILHAKD-VPYKP 115
           V+   D   K +  A+ E A QD+   DC V+ +L+HG         G ++  D  P   
Sbjct: 62  VEVKGDLTAKKMVLALLELARQDHGALDCCVVVILSHGCQASHLQFPGAVYGTDGCPVSV 121
Query: 116 KNLWSKFTADNCLTLAGKPKLFFIQACQGDKLDAGVTIRT 155
           + + + F   +C +L GKPKLFFIQAC G++ D G  + +
Sbjct: 122 EKIVNIFNGTSCPSLGGKPKLFFIQACGGEQKDHGFEVAS 161

>pdb|3R5J|A Chain A, Crystal Structure Of Active Caspase-2 Bound With Ac-Advad-Cho Length = 160

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/138 (33%), Positives = 74/138 (53%), Gaps = 3/138 (2%)
Query: 17  YRMDHKHRGLALIFNHEHFD-SPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVI 75
           YR+  + RGLAL+ ++ HF     L+ R+G   D   L T    LG+ V    D   + +
Sbjct: 19  YRLQSRPRGLALVLSNVHFTGEKELEFRSGGDVDHSTLVTLFKLLGYDVHVLCDQTAQEM 78
Query: 76  QNAIDEAAEQD-YTDADCFVMAVLTHGEDGILHAKDVPY-KPKNLWSKFTADNCLTLAGK 133
           Q  +   A+   +   D  ++A+L+HG +G ++  D    + + ++  F   NC +L  K
Sbjct: 79  QEKLQNFAQLPAHRVTDSCIVALLSHGVEGAIYGVDGKLLQLQEVFQLFDNANCPSLQNK 138
Query: 134 PKLFFIQACQGDKLDAGV 151
           PK+FFIQAC+GD+ D GV
Sbjct: 139 PKMFFIQACRGDETDRGV 156

>pdb|1PYO|A Chain A, Crystal Structure Of Human Caspase-2 In Complex With Acetyl-Leu-Asp- Glu-Ser-Asp-Cho Length = 167

Iteration: 1
 Score = 74.3 bits (181), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/138 (33%), Positives = 74/138 (53%), Gaps = 3/138 (2%)
Query: 17  YRMDHKHRGLALIFNHEHFD-SPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVI 75
           YR+  + RGLAL+ ++ HF     L+ R+G   D   L T    LG+ V    D   + +
Sbjct: 26  YRLQSRPRGLALVLSNVHFTGEKELEFRSGGDVDHSTLVTLFKLLGYDVHVLCDQTAQEM 85
Query: 76  QNAIDEAAEQD-YTDADCFVMAVLTHGEDGILHAKDVPY-KPKNLWSKFTADNCLTLAGK 133
           Q  +   A+   +   D  ++A+L+HG +G ++  D    + + ++  F   NC +L  K
Sbjct: 86  QEKLQNFAQLPAHRVTDSCIVALLSHGVEGAIYGVDGKLLQLQEVFQLFDNANCPSLQNK 145
Query: 134 PKLFFIQACQGDKLDAGV 151
           PK+FFIQAC+GD+ D GV
Sbjct: 146 PKMFFIQACRGDETDRGV 163

>pdb|3RJM|A Chain A, Caspase2 In Complex With Chdi Ligand 33c Length = 169

Iteration: 1
 Score = 74.3 bits (181), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/138 (33%), Positives = 74/138 (53%), Gaps = 3/138 (2%)
Query: 17  YRMDHKHRGLALIFNHEHFD-SPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVI 75
           YR+  + RGLAL+ ++ HF     L+ R+G   D   L T    LG+ V    D   + +
Sbjct: 28  YRLQSRPRGLALVLSNVHFTGEKELEFRSGGDVDHSTLVTLFKLLGYDVHVLCDQTAQEM 87
Query: 76  QNAIDEAAEQD-YTDADCFVMAVLTHGEDGILHAKDVPY-KPKNLWSKFTADNCLTLAGK 133
           Q  +   A+   +   D  ++A+L+HG +G ++  D    + + ++  F   NC +L  K
Sbjct: 88  QEKLQNFAQLPAHRVTDSCIVALLSHGVEGAIYGVDGKLLQLQEVFQLFDNANCPSLQNK 147
Query: 134 PKLFFIQACQGDKLDAGV 151
           PK+FFIQAC+GD+ D GV
Sbjct: 148 PKMFFIQACRGDETDRGV 165

>pdb|2P2C|A Chain A, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 74.3 bits (181), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/138 (33%), Positives = 74/138 (53%), Gaps = 3/138 (2%)
Query: 17  YRMDHKHRGLALIFNHEHFD-SPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVI 75
           YR+  + RGLAL+ ++ HF     L+ R+G   D   L T    LG+ V    D   + +
Sbjct: 28  YRLQSRPRGLALVLSNVHFTGEKELEFRSGGDVDHSTLVTLFKLLGYDVHVLCDQTAQEM 87
Query: 76  QNAIDEAAEQD-YTDADCFVMAVLTHGEDGILHAKDVPY-KPKNLWSKFTADNCLTLAGK 133
           Q  +   A+   +   D  ++A+L+HG +G ++  D    + + ++  F   NC +L  K
Sbjct: 88  QEKLQNFAQLPAHRVTDSCIVALLSHGVEGAIYGVDGKLLQLQEVFQLFDNANCPSLQNK 147
Query: 134 PKLFFIQACQGDKLDAGV 151
           PK+FFIQAC+GD+ D GV
Sbjct: 148 PKMFFIQACRGDETDRGV 165

>pdb|2AR9|A Chain A, Crystal Structure Of A Dimeric Caspase-9 Length = 278

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 80/160 (50%), Gaps = 10/160 (6%)
Query: 6   AKSTVEKDADY-YRMDHKHRGLALIFNHEHF-DSPHLKSRAGTGADFENLYTTLVNLGFV 63
           A  ++  +AD  Y +  +  G  LI N+ +F     L++R G+  D E L     +L F+
Sbjct: 3   ALESLRGNADLAYILSMEPCGHCLIINNVNFCRESGLRTRTGSNIDCEKLRRRFSSLHFM 62
Query: 64  VKPYHDPEFKVIQNAIDEAAEQDYTDADCFVMAVLTHGED-------GILHAKD-VPYKP 115
           V+   D   K +  A+ E A QD+   DC V+ +L+HG         G ++  D  P   
Sbjct: 63  VEVKGDLTAKKMVLALLELARQDHGALDCCVVVILSHGCQASHLQFPGAVYGTDGCPVSV 122
Query: 116 KNLWSKFTADNCLTLAGKPKLFFIQACQGDKLDAGVTIRT 155
           + + + F   +C +L GKPKLFFIQA  G++ D G  + +
Sbjct: 123 EKIVNIFNGTSCPSLGGKPKLFFIQASGGEQKDHGFEVAS 162

>pdb|3D6H|A Chain A, Crystal Structure Of Human Caspase-1 With A Naturally-Occurring Asn263->ser Substitution In Complex With 3-[2-(2- Benzyloxycarbonylamino-3-Methyl-Butyrylamino)- Propionylamino]-4-Oxo- Pentanoic Acid (Z-Vad-Fmk) Length = 179

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 70/144 (48%), Gaps = 11/144 (7%)
Query: 11  EKDADYYR-MDHKHRG-LALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYH 68
           +K A+ Y  MD   R  LALI  +E FDS  +  R G   D   +   L NLG+ V    
Sbjct: 29  QKSAEIYPIMDKSSRTRLALIICNEEFDS--IPRRTGAEVDITGMTMLLQNLGYSVDVKK 86
Query: 69  DPEFKVIQNAIDEAAEQ-DYTDADCFVMAVLTHG-EDGIL---HAKDVP--YKPKNLWSK 121
           +     +   ++  A + ++  +D   +  ++HG  +GI    H++ VP   +   ++S 
Sbjct: 87  NLTASDMTTELEAFAHRPEHKTSDSTFLVFMSHGIREGICGKKHSEQVPDILQLNAIFSM 146
Query: 122 FTADNCLTLAGKPKLFFIQACQGD 145
               NC +L  KPK+  IQAC+GD
Sbjct: 147 LNTKNCPSLKDKPKVIIIQACRGD 170

>pdb|3D6F|A Chain A, Crystal Structure Of Human Caspase-1 With A Naturally-Occurring Arg240->gln Substitution In Complex With 3-[2-(2- Benzyloxycarbonylamino-3-Methyl-Butyrylamino)- Propionylamino]-4-Oxo- Pentanoic Acid (Z-Vad-Fmk) Length = 179

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 71/144 (49%), Gaps = 11/144 (7%)
Query: 11  EKDADYYR-MDHKHRG-LALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYH 68
           +K A+ Y  MD   R  LALI  +E FDS  +  R G   D   +   L NLG+ V    
Sbjct: 29  QKSAEIYPIMDKSSRTRLALIICNEEFDS--IPRRTGAEVDITGMTMLLQNLGYSVDVKK 86
Query: 69  DPEFKVIQNAIDEAAEQ-DYTDADCFVMAVLTHG-EDGIL---HAKDVP--YKPKNLWSK 121
           +     +   ++  A + ++  +D   +  ++HG ++GI    H++ VP   +   +++ 
Sbjct: 87  NLTASDMTTELEAFAHRPEHKTSDSTFLVFMSHGIQEGICGKKHSEQVPDILQLNAIFNM 146
Query: 122 FTADNCLTLAGKPKLFFIQACQGD 145
               NC +L  KPK+  IQAC+GD
Sbjct: 147 LNTKNCPSLKDKPKVIIIQACRGD 170

>pdb|1IBC|A Chain A, Crystal Structure Of Inhibited Interleukin-1beta Converting Enzyme Length = 194

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 70/144 (48%), Gaps = 11/144 (7%)
Query: 11  EKDADYYR-MDHKHRG-LALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYH 68
           +K A+ Y  MD   R  LALI  +E FDS  +  R G   D   +   L NLG+ V    
Sbjct: 44  QKSAEIYPIMDKSSRTRLALIICNEEFDS--IPRRTGAEVDITGMTMLLQNLGYSVDVKK 101
Query: 69  DPEFKVIQNAIDEAAEQ-DYTDADCFVMAVLTHG-EDGIL---HAKDVP--YKPKNLWSK 121
           +     +   ++  A + ++  +D   +  ++HG  +GI    H++ VP   +   +++ 
Sbjct: 102 NLTASDMTTELEAFAHRPEHKTSDSTFLVFMSHGIREGICGKKHSEQVPDILQLNAIFNM 161
Query: 122 FTADNCLTLAGKPKLFFIQACQGD 145
               NC +L  KPK+  IQAC+GD
Sbjct: 162 LNTKNCPSLKDKPKVIIIQACRGD 185

>pdb|3D6M|A Chain A, Crystal Structure Of Human Caspase-1 With A Naturally-Occurring Lys319->arg Substitution In Complex With 3-[2-(2- Benzyloxycarbonylamino-3-Methyl-Butyrylamino)- Propionylamino]-4-Oxo- Pentanoic Acid (Z-Vad-Fmk) Length = 179

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 70/144 (48%), Gaps = 11/144 (7%)
Query: 11  EKDADYYR-MDHKHRG-LALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYH 68
           +K A+ Y  MD   R  LALI  +E FDS  +  R G   D   +   L NLG+ V    
Sbjct: 29  QKSAEIYPIMDKSSRTRLALIICNEEFDS--IPRRTGAEVDITGMTMLLQNLGYSVDVKK 86
Query: 69  DPEFKVIQNAIDEAAEQ-DYTDADCFVMAVLTHG-EDGIL---HAKDVP--YKPKNLWSK 121
           +     +   ++  A + ++  +D   +  ++HG  +GI    H++ VP   +   +++ 
Sbjct: 87  NLTASDMTTELEAFAHRPEHKTSDSTFLVFMSHGIREGICGKKHSEQVPDILQLNAIFNM 146
Query: 122 FTADNCLTLAGKPKLFFIQACQGD 145
               NC +L  KPK+  IQAC+GD
Sbjct: 147 LNTKNCPSLKDKPKVIIIQACRGD 170

>pdb|1RWK|A Chain A, Crystal Structure Of Human Caspase-1 In Complex With 3-(2-Mercapto- Acetylamino)-4-Oxo-Pentanoic Acid Length = 178

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 70/144 (48%), Gaps = 11/144 (7%)
Query: 11  EKDADYYR-MDHKHRG-LALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYH 68
           +K A+ Y  MD   R  LALI  +E FDS  +  R G   D   +   L NLG+ V    
Sbjct: 28  QKSAEIYPIMDKSSRTRLALIICNEEFDS--IPRRTGAEVDITGMTMLLQNLGYSVDVKK 85
Query: 69  DPEFKVIQNAIDEAAEQ-DYTDADCFVMAVLTHG-EDGIL---HAKDVP--YKPKNLWSK 121
           +     +   ++  A + ++  +D   +  ++HG  +GI    H++ VP   +   +++ 
Sbjct: 86  NLTASDMTTELEAFAHRPEHKTSDSTFLVFMSHGIREGICGKKHSEQVPDILQLNAIFNM 145
Query: 122 FTADNCLTLAGKPKLFFIQACQGD 145
               NC +L  KPK+  IQAC+GD
Sbjct: 146 LNTKNCPSLKDKPKVIIIQACRGD 169

>pdb|2H4Y|A Chain A, Crystal Structure Of Human Caspase-1 (Arg286->lys) In Complex With 3- [2-(2-Benzyloxycarbonylamino-3-Methyl-Butyrylamino)- Propionylamino]- 4-Oxo-Pentanoic Acid (Z-Vad-Fmk) Length = 178

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 70/144 (48%), Gaps = 11/144 (7%)
Query: 11  EKDADYYR-MDHKHRG-LALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYH 68
           +K A+ Y  MD   R  LALI  +E FDS  +  R G   D   +   L NLG+ V    
Sbjct: 28  QKSAEIYPIMDKSSRTRLALIICNEEFDS--IPRRTGAEVDITGMTMLLQNLGYSVDVKK 85
Query: 69  DPEFKVIQNAIDEAAEQ-DYTDADCFVMAVLTHG-EDGIL---HAKDVP--YKPKNLWSK 121
           +     +   ++  A + ++  +D   +  ++HG  +GI    H++ VP   +   +++ 
Sbjct: 86  NLTASDMTTELEAFAHRPEHKTSDSTFLVFMSHGIREGICGKKHSEQVPDILQLNAIFNM 145
Query: 122 FTADNCLTLAGKPKLFFIQACQGD 145
               NC +L  KPK+  IQAC+GD
Sbjct: 146 LNTKNCPSLKDKPKVIIIQACKGD 169

>pdb|1ICE|A Chain A, Structure And Mechanism Of Interleukin-1beta Converting Enzyme Length = 167

Iteration: 1
 Score = 55.5 bits (132), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 70/144 (48%), Gaps = 11/144 (7%)
Query: 11  EKDADYYR-MDHKHRG-LALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYH 68
           +K A+ Y  MD   R  LALI  +E FDS  +  R G   D   +   L NLG+ V    
Sbjct: 17  QKSAEIYPIMDKSSRTRLALIICNEEFDS--IPRRTGAEVDITGMTMLLQNLGYSVDVKK 74
Query: 69  DPEFKVIQNAIDEAAEQ-DYTDADCFVMAVLTHG-EDGIL---HAKDVP--YKPKNLWSK 121
           +     +   ++  A + ++  +D   +  ++HG  +GI    H++ VP   +   +++ 
Sbjct: 75  NLTASDMTTELEAFAHRPEHKTSDSTFLVFMSHGIREGICGKKHSEQVPDILQLNAIFNM 134
Query: 122 FTADNCLTLAGKPKLFFIQACQGD 145
               NC +L  KPK+  IQAC+GD
Sbjct: 135 LNTKNCPSLKDKPKVIIIQACRGD 158

>pdb|3NS7|A Chain A, Succinic Acid Amides As P2-P3 Replacements For Inhibitors Of Interleukin-1beta Converting Enzyme (Ice Or Caspase 1) Length = 162

Iteration: 1
 Score = 55.1 bits (131), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 70/144 (48%), Gaps = 11/144 (7%)
Query: 11  EKDADYYR-MDHKHRG-LALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYH 68
           +K A+ Y  MD   R  LALI  +E FDS  +  R G   D   +   L NLG+ V    
Sbjct: 12  QKSAEIYPIMDKSSRTRLALIICNEEFDS--IPRRTGAEVDITGMTMLLQNLGYSVDVKK 69
Query: 69  DPEFKVIQNAIDEAAEQ-DYTDADCFVMAVLTHG-EDGIL---HAKDVP--YKPKNLWSK 121
           +     +   ++  A + ++  +D   +  ++HG  +GI    H++ VP   +   +++ 
Sbjct: 70  NLTASDMTTELEAFAHRPEHKTSDSTFLVFMSHGIREGICGKKHSEQVPDILQLNAIFNM 129
Query: 122 FTADNCLTLAGKPKLFFIQACQGD 145
               NC +L  KPK+  IQAC+GD
Sbjct: 130 LNTKNCPSLKDKPKVIIIQACRGD 153

>pdb|2HBR|A Chain A, Crystal Structure Of Human Caspase-1 (Arg286->ala) In Complex With 3- [2-(2-Benzyloxycarbonylamino-3-Methyl-Butyrylamino)- Propionylamino]- 4-Oxo-Pentanoic Acid (Z-Vad-Fmk) Length = 178

Iteration: 1
 Score = 55.1 bits (131), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 69/144 (47%), Gaps = 11/144 (7%)
Query: 11  EKDADYYR-MDHKHRG-LALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYH 68
           +K A+ Y  MD   R  LALI  +E FDS  +  R G   D   +   L NLG+ V    
Sbjct: 28  QKSAEIYPIMDKSSRTRLALIICNEEFDS--IPRRTGAEVDITGMTMLLQNLGYSVDVKK 85
Query: 69  DPEFKVIQNAIDEAAEQ-DYTDADCFVMAVLTHG-EDGIL---HAKDVP--YKPKNLWSK 121
           +     +   ++  A + ++  +D   +  ++HG  +GI    H++ VP   +   +++ 
Sbjct: 86  NLTASDMTTELEAFAHRPEHKTSDSTFLVFMSHGIREGICGKKHSEQVPDILQLNAIFNM 145
Query: 122 FTADNCLTLAGKPKLFFIQACQGD 145
               NC +L  KPK+  IQAC GD
Sbjct: 146 LNTKNCPSLKDKPKVIIIQACAGD 169

>pdb|1SC1|A Chain A, Crystal Structure Of An Active-Site Ligand-Free Form Of The Human Caspase-1 C285a Mutant Length = 178

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 69/144 (47%), Gaps = 11/144 (7%)
Query: 11  EKDADYYR-MDHKHRG-LALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYH 68
           +K A+ Y  MD   R  LALI  +E FDS  +  R G   D   +   L NLG+ V    
Sbjct: 28  QKSAEIYPIMDKSSRTRLALIICNEEFDS--IPRRTGAEVDITGMTMLLQNLGYSVDVKK 85
Query: 69  DPEFKVIQNAIDEAAEQ-DYTDADCFVMAVLTHG-EDGIL---HAKDVP--YKPKNLWSK 121
           +     +   ++  A + ++  +D   +  ++HG  +GI    H++ VP   +   +++ 
Sbjct: 86  NLTASDMTTELEAFAHRPEHKTSDSTFLVFMSHGIREGICGKKHSEQVPDILQLNAIFNM 145
Query: 122 FTADNCLTLAGKPKLFFIQACQGD 145
               NC +L  KPK+  IQA +GD
Sbjct: 146 LNTKNCPSLKDKPKVIIIQAARGD 169

>pdb|3E4C|A Chain A, Procaspase-1 Zymogen Domain Crystal Strucutre Length = 302

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 69/144 (47%), Gaps = 11/144 (7%)
Query: 11  EKDADYYR-MDHKHRG-LALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYH 68
           +K A+ Y  MD   R  LALI  +E FDS  +  R G   D   +   L NLG+ V    
Sbjct: 45  QKSAEIYPIMDKSSRTRLALIICNEEFDS--IPRRTGAEVDITGMTMLLQNLGYSVDVKK 102
Query: 69  DPEFKVIQNAIDEAAEQ-DYTDADCFVMAVLTHG-EDGIL---HAKDVP--YKPKNLWSK 121
           +     +   ++  A + ++  +D   +  ++HG  +GI    H++ VP   +   +++ 
Sbjct: 103 NLTASDMTTELEAFAHRPEHKTSDSTFLVFMSHGIREGICGKKHSEQVPDILQLNAIFNM 162
Query: 122 FTADNCLTLAGKPKLFFIQACQGD 145
               NC +L  KPK+  IQA +GD
Sbjct: 163 LNTKNCPSLKDKPKVIIIQAARGD 186

>pdb|2FP3|A Chain A, Crystal Structure Of The Drosophila Initiator Caspase Dronc Length = 316

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/221 (24%), Positives = 95/221 (42%), Gaps = 38/221 (17%)
Query: 17  YRMDHK-HRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPY----HDPE 71
           Y+M  + +RG+ L+ N   +   + + R G   D ++L      L F + PY     D  
Sbjct: 53  YKMQSRFNRGVLLMVNIMDYPDQN-RRRIGAEKDSKSLIHLFQELNFTIFPYGNVNQDQF 111
Query: 72  FKVIQNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKP------KNLWSKFTAD 125
           FK++      +  Q+    +CFVM ++THG + +   + V ++       + +   F   
Sbjct: 112 FKLLTMVTSSSYVQN---TECFVMVLMTHG-NSVEGKEKVEFRDGSVVDMQKIKDHFQTA 167
Query: 126 NCLTLAGKPKLFFIQACQGDKLDAG------------VTIR------TQVDGHPSNTYSI 167
            C  L  KPK+      +GD+ D G             T +      TQ +G PS + ++
Sbjct: 168 KCPYLVNKPKVLMFPFARGDEYDLGHPKNQGNLMEPVYTAQEEKWPDTQTEGIPSPSTNV 227
Query: 168 PLHADFLMAYSTISDSPMFGQRFGLKDKCSKVVSKTYQVMS 208
           P  AD L+ Y   +++P +     L D  S  + K  QVM+
Sbjct: 228 PSLADTLVCY---ANTPGYVTHRDL-DTGSWYIQKFCQVMA 264

>pdb|3H11|A Chain A, Zymogen Caspase-8:c-Flipl Protease Domain Complex Length = 272

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 63/149 (42%), Gaps = 25/149 (16%)
Query: 4   PVAKSTVEKDA--------DYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYT 55
           PV KS  E +A        + Y+M  K  G+ LI +               G + E L  
Sbjct: 15  PVKKSIQESEAFLPQSIPEERYKMKSKPLGICLIID-------------CIGNETELLRD 61
Query: 56  TLVNLGFVVKPYHDPEFKVIQNAIDE-AAEQDYTDADCFVMAVLTHGEDGILHAKDVPYK 114
           T  +LG+ V+ +       I   + + A   ++ D D FV  +++ G    ++  D  + 
Sbjct: 62  TFTSLGYEVQKFLHLSMHGISQILGQFACMPEHRDYDSFVCVLVSRGGSQSVYGVDQTHS 121
Query: 115 PKNL---WSKFTADNCLTLAGKPKLFFIQ 140
              L      F  D+C  LAGKPK+FFIQ
Sbjct: 122 GLPLHHIRRMFMGDSCPYLAGKPKMFFIQ 150

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	455
1m72_A	272	Caspase-1; caspase, cysteine protease, hydrolase-h	3e-55
1m72_A	272	Caspase-1; caspase, cysteine protease, hydrolase-h	2e-19
1m72_A	272	Caspase-1; caspase, cysteine protease, hydrolase-h	2e-19
3sir_A	259	Caspase; hydrolase; 2.68A {Drosophila melanogaster	5e-55
3sir_A	259	Caspase; hydrolase; 2.68A {Drosophila melanogaster	4e-19
3sir_A	259	Caspase; hydrolase; 2.68A {Drosophila melanogaster	4e-19
2nn3_C	310	Caspase-1; cysteine protease, hydrolase; 3.00A {Sp	6e-55
2nn3_C	310	Caspase-1; cysteine protease, hydrolase; 3.00A {Sp	4e-19
2nn3_C	310	Caspase-1; cysteine protease, hydrolase; 3.00A {Sp	2e-18
2dko_A	146	Caspase-3; low barrier hydrogen bond, caspase, dru	8e-51
2dko_A	146	Caspase-3; low barrier hydrogen bond, caspase, dru	4e-16
2dko_A	146	Caspase-3; low barrier hydrogen bond, caspase, dru	4e-16
2ql9_A	173	Caspase-7; cysteine protease, apoptosis, thiol pro	4e-50
2ql9_A	173	Caspase-7; cysteine protease, apoptosis, thiol pro	1e-15
2ql9_A	173	Caspase-7; cysteine protease, apoptosis, thiol pro	2e-15
2j32_A	250	Caspase-3; Pro-caspase3, thiol protease, hydrolase	8e-49
2j32_A	250	Caspase-3; Pro-caspase3, thiol protease, hydrolase	3e-15
2j32_A	250	Caspase-3; Pro-caspase3, thiol protease, hydrolase	3e-15
3od5_A	278	Caspase-6; caspase domain, apoptotic protease, hyd	9e-49
3od5_A	278	Caspase-6; caspase domain, apoptotic protease, hyd	3e-16
3od5_A	278	Caspase-6; caspase domain, apoptotic protease, hyd	3e-16
1qtn_A	164	Caspase-8; apoptosis, dithiane-DIOL, caspase, cyst	2e-48
1qtn_A	164	Caspase-8; apoptosis, dithiane-DIOL, caspase, cyst	8e-15
1qtn_A	164	Caspase-8; apoptosis, dithiane-DIOL, caspase, cyst	8e-15
4ehd_A	277	Caspase-3; caspase, apoptosis, allosteric inhibiti	5e-48
4ehd_A	277	Caspase-3; caspase, apoptosis, allosteric inhibiti	2e-14
4ehd_A	277	Caspase-3; caspase, apoptosis, allosteric inhibiti	2e-14
1f1j_A	305	Caspase-7 protease; caspase-7, cysteine protease,	7e-48
1f1j_A	305	Caspase-7 protease; caspase-7, cysteine protease,	1e-15
1f1j_A	305	Caspase-7 protease; caspase-7, cysteine protease,	3e-15
1pyo_A	167	Caspase-2; apoptosis, caspase, alpha-beta, thiol p	2e-47
1pyo_A	167	Caspase-2; apoptosis, caspase, alpha-beta, thiol p	1e-16
1pyo_A	167	Caspase-2; apoptosis, caspase, alpha-beta, thiol p	1e-16
3p45_A	179	Caspase-6; protease, huntington'S disease, physio	7e-47
3p45_A	179	Caspase-6; protease, huntington'S disease, physio	2e-13
3p45_A	179	Caspase-6; protease, huntington'S disease, physio	2e-13
2fp3_A	316	Caspase NC; apoptosis, initiator caspase activatio	9e-43
2fp3_A	316	Caspase NC; apoptosis, initiator caspase activatio	2e-13
2fp3_A	316	Caspase NC; apoptosis, initiator caspase activatio	4e-13
3h11_B	271	Caspase-8; cell death, apoptosis, caspase, alterna	3e-42
3h11_B	271	Caspase-8; cell death, apoptosis, caspase, alterna	9e-14
3h11_B	271	Caspase-8; cell death, apoptosis, caspase, alterna	9e-14
1nw9_B	277	Caspase 9, apoptosis-related cysteine protease; XI	6e-42
1nw9_B	277	Caspase 9, apoptosis-related cysteine protease; XI	1e-15
1nw9_B	277	Caspase 9, apoptosis-related cysteine protease; XI	1e-15
3h11_A	272	CAsp8 and FADD-like apoptosis regulator; cell deat	1e-39
3h11_A	272	CAsp8 and FADD-like apoptosis regulator; cell deat	1e-09
3h11_A	272	CAsp8 and FADD-like apoptosis regulator; cell deat	1e-09
2h54_A	178	Caspase-1; allosteric site, dimer interface, hydro	4e-39
2h54_A	178	Caspase-1; allosteric site, dimer interface, hydro	8e-15
2h54_A	178	Caspase-1; allosteric site, dimer interface, hydro	2e-14
3e4c_A	302	Caspase-1; zymogen, inflammasome, ICE, IL-1B, inna	9e-39
3e4c_A	302	Caspase-1; zymogen, inflammasome, ICE, IL-1B, inna	2e-14
3e4c_A	302	Caspase-1; zymogen, inflammasome, ICE, IL-1B, inna	8e-14
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04

>1m72_A Caspase-1; caspase, cysteine protease, hydrolase-hydrolase inhibitor CO; 2.30A {Spodoptera frugiperda} SCOP: c.17.1.1 PDB: 3sip_B Length = 272

 Score =  184 bits (467), Expect = 3e-55
 Identities = 105/183 (57%), Positives = 134/183 (73%), Gaps = 1/183 (0%)

Query: 5   VAKSTVEKDADYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVV 64
           VA+  V+++A YY M+HKHRG+A+IFNHEHFD   LKSR GT  D +NL   L  LGF V
Sbjct: 13  VARMPVDRNAPYYNMNHKHRGMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGFKV 72

Query: 65  KPYHDPEFKVIQNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTA 124
             + + + + I   I + AE D++DADC ++AVLTHGE G+L+AKD  YKP NLW  FTA
Sbjct: 73  TVFPNLKSEEINKFIQQTAEMDHSDADCLLVAVLTHGELGMLYAKDTHYKPDNLWYYFTA 132

Query: 125 DNCLTLAGKPKLFFIQACQGDKLDAGVTI-RTQVDGHPSNTYSIPLHADFLMAYSTISDS 183
           D C TLAGKPKLFFIQACQGD+LD G+T+ RT+ DG PS +Y IP+HADFL+A+ST+   
Sbjct: 133 DKCPTLAGKPKLFFIQACQGDRLDGGITLSRTETDGSPSTSYRIPVHADFLIAFSTVPGY 192

Query: 184 PMF 186
             +
Sbjct: 193 FSW 195

>1m72_A Caspase-1; caspase, cysteine protease, hydrolase-hydrolase inhibitor CO; 2.30A {Spodoptera frugiperda} SCOP: c.17.1.1 PDB: 3sip_B Length = 272

 Score = 87.1 bits (215), Expect = 2e-19
 Identities = 37/77 (48%), Positives = 50/77 (64%)

Query: 279 VAKSTVEKDADYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVV 338
           VA+  V+++A YY M+HKHRG+A+IFNHEHFD   LKSR GT  D +NL   L  LGF V
Sbjct: 13  VARMPVDRNAPYYNMNHKHRGMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGFKV 72

Query: 339 KPYHDPEFKVIQNAIDE 355
             + + + + I   I +
Sbjct: 73  TVFPNLKSEEINKFIQQ 89

>1m72_A Caspase-1; caspase, cysteine protease, hydrolase-hydrolase inhibitor CO; 2.30A {Spodoptera frugiperda} SCOP: c.17.1.1 PDB: 3sip_B Length = 272

 Score = 87.1 bits (215), Expect = 2e-19
 Identities = 37/77 (48%), Positives = 50/77 (64%)

Query: 358 VAKSTVEKDADYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVV 417
           VA+  V+++A YY M+HKHRG+A+IFNHEHFD   LKSR GT  D +NL   L  LGF V
Sbjct: 13  VARMPVDRNAPYYNMNHKHRGMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGFKV 72

Query: 418 KPYHDPEFKVIQNAIDE 434
             + + + + I   I +
Sbjct: 73  TVFPNLKSEEINKFIQQ 89

>3sir_A Caspase; hydrolase; 2.68A {Drosophila melanogaster} PDB: 3sip_A Length = 259

 Score =  183 bits (464), Expect = 5e-55
 Identities = 98/180 (54%), Positives = 128/180 (71%), Gaps = 3/180 (1%)

Query: 8   STVEKDADYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPY 67
           S  ++ A  Y M HK+RG+ALIFNHEHF+ P LKSRAGT  D ENL   L  L F V  Y
Sbjct: 4   SVTDRHAAEYNMRHKNRGMALIFNHEHFEVPTLKSRAGTNVDCENLTRVLKQLDFEVTVY 63

Query: 68  HDPEFKVIQNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNC 127
            D  +K I   I+ +A Q+++D+DC ++A+L+HGE G ++AKD  YK  N+WS FTA++C
Sbjct: 64  KDCRYKDILRTIEYSASQNHSDSDCILVAILSHGEMGYIYAKDTQYKLDNIWSFFTANHC 123

Query: 128 LTLAGKPKLFFIQACQGDKLDAGVTI---RTQVDGHPSNTYSIPLHADFLMAYSTISDSP 184
            +LAGKPKLFFIQACQGD+LD GVT+   +T+ DG  S +Y IP+HADFL+AYST+    
Sbjct: 124 PSLAGKPKLFFIQACQGDRLDGGVTMQRSQTETDGDSSMSYKIPVHADFLIAYSTVPGFY 183

>3sir_A Caspase; hydrolase; 2.68A {Drosophila melanogaster} PDB: 3sip_A Length = 259

 Score = 85.6 bits (211), Expect = 4e-19
 Identities = 38/74 (51%), Positives = 45/74 (60%)

Query: 282 STVEKDADYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPY 341
           S  ++ A  Y M HK+RG+ALIFNHEHF+ P LKSRAGT  D ENL   L  L F V  Y
Sbjct: 4   SVTDRHAAEYNMRHKNRGMALIFNHEHFEVPTLKSRAGTNVDCENLTRVLKQLDFEVTVY 63

Query: 342 HDPEFKVIQNAIDE 355
            D  +K I   I+ 
Sbjct: 64  KDCRYKDILRTIEY 77

>3sir_A Caspase; hydrolase; 2.68A {Drosophila melanogaster} PDB: 3sip_A Length = 259

 Score = 85.6 bits (211), Expect = 4e-19
 Identities = 38/74 (51%), Positives = 45/74 (60%)

Query: 361 STVEKDADYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPY 420
           S  ++ A  Y M HK+RG+ALIFNHEHF+ P LKSRAGT  D ENL   L  L F V  Y
Sbjct: 4   SVTDRHAAEYNMRHKNRGMALIFNHEHFEVPTLKSRAGTNVDCENLTRVLKQLDFEVTVY 63

Query: 421 HDPEFKVIQNAIDE 434
            D  +K I   I+ 
Sbjct: 64  KDCRYKDILRTIEY 77

>2nn3_C Caspase-1; cysteine protease, hydrolase; 3.00A {Spodoptera frugiperda} Length = 310

 Score =  184 bits (468), Expect = 6e-55
 Identities = 104/184 (56%), Positives = 133/184 (72%), Gaps = 1/184 (0%)

Query: 4   PVAKSTVEKDADYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFV 63
            VA+  V+++A YY M+HKHRG+A+IFNHEHFD   LKSR GT  D +NL   L  LGF 
Sbjct: 40  RVARMPVDRNAPYYNMNHKHRGMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGFK 99

Query: 64  VKPYHDPEFKVIQNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFT 123
           V  + + + + I   I + AE D++DADC ++AVLT GE G+L+AKD  YKP NLW  FT
Sbjct: 100 VTVFPNLKSEEINKFIQQTAEMDHSDADCLLVAVLTAGELGMLYAKDTHYKPDNLWYYFT 159

Query: 124 ADNCLTLAGKPKLFFIQACQGDKLDAGVTI-RTQVDGHPSNTYSIPLHADFLMAYSTISD 182
           AD C TLAGKPKLFFIQACQGD+LD G+T+ RT+ DG PS +Y IP+HADFL+A+ST+  
Sbjct: 160 ADKCPTLAGKPKLFFIQACQGDRLDGGITLSRTETDGSPSTSYRIPVHADFLIAFSTVPG 219

Query: 183 SPMF 186
              +
Sbjct: 220 YFSW 223

>2nn3_C Caspase-1; cysteine protease, hydrolase; 3.00A {Spodoptera frugiperda} Length = 310

 Score = 86.8 bits (214), Expect = 4e-19
 Identities = 45/97 (46%), Positives = 59/97 (60%), Gaps = 2/97 (2%)

Query: 259 GKDEGDVLGFNFGRTRMKGPVAKSTVEKDADYYRMDHKHRGLALIFNHEHFDSPHLKSRA 318
           G DEGD LG N   +     VA+  V+++A YY M+HKHRG+A+IFNHEHFD   LKSR 
Sbjct: 23  GGDEGDALGSN--SSSQPNRVARMPVDRNAPYYNMNHKHRGMAIIFNHEHFDIHSLKSRT 80

Query: 319 GTGADFENLYTTLVNLGFVVKPYHDPEFKVIQNAIDE 355
           GT  D +NL   L  LGF V  + + + + I   I +
Sbjct: 81  GTNVDSDNLSKVLKTLGFKVTVFPNLKSEEINKFIQQ 117

>2nn3_C Caspase-1; cysteine protease, hydrolase; 3.00A {Spodoptera frugiperda} Length = 310

 Score = 84.8 bits (209), Expect = 2e-18
 Identities = 37/78 (47%), Positives = 50/78 (64%)

Query: 357 PVAKSTVEKDADYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFV 416
            VA+  V+++A YY M+HKHRG+A+IFNHEHFD   LKSR GT  D +NL   L  LGF 
Sbjct: 40  RVARMPVDRNAPYYNMNHKHRGMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGFK 99

Query: 417 VKPYHDPEFKVIQNAIDE 434
           V  + + + + I   I +
Sbjct: 100 VTVFPNLKSEEINKFIQQ 117

>2dko_A Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 1nme_A 2h5i_A 2h5j_A 2h65_A 2xyg_A* 2xyh_A 2xyp_A* 2xzd_A 2xzt_A 2y0b_A 3edq_A 1gfw_A 1re1_A* 1pau_A* 1rhk_A* 1rhm_A* 1rhq_A* 1rhr_A* 1rhu_A* 1rhj_A* ... Length = 146

 Score =  168 bits (426), Expect = 8e-51
 Identities = 53/145 (36%), Positives = 85/145 (58%), Gaps = 2/145 (1%)

Query: 8   STVEKDADYYRMDHKHRGLALIFNHEHFD-SPHLKSRAGTGADFENLYTTLVNLGFVVKP 66
           S +  D + Y+MD+   GL +I N+++F  S  + SR+GT  D  NL  T  NL + V+ 
Sbjct: 1   SGISLD-NSYKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRN 59

Query: 67  YHDPEFKVIQNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADN 126
            +D   + I   + + +++D++    FV  +L+HGE+GI+   + P   K + + F  D 
Sbjct: 60  KNDLTREEIVELMRDVSKEDHSKRSSFVCVLLSHGEEGIIFGTNGPVDLKKITNFFRGDR 119

Query: 127 CLTLAGKPKLFFIQACQGDKLDAGV 151
           C +L GKPKLF IQAC+G +LD G+
Sbjct: 120 CRSLTGKPKLFIIQACRGTELDCGI 144

>2dko_A Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 1nme_A 2h5i_A 2h5j_A 2h65_A 2xyg_A* 2xyh_A 2xyp_A* 2xzd_A 2xzt_A 2y0b_A 3edq_A 1gfw_A 1re1_A* 1pau_A* 1rhk_A* 1rhm_A* 1rhq_A* 1rhr_A* 1rhu_A* 1rhj_A* ... Length = 146

 Score = 74.2 bits (182), Expect = 4e-16
 Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 2/75 (2%)

Query: 282 STVEKDADYYRMDHKHRGLALIFNHEHFD-SPHLKSRAGTGADFENLYTTLVNLGFVVKP 340
           S +  D + Y+MD+   GL +I N+++F  S  + SR+GT  D  NL  T  NL + V+ 
Sbjct: 1   SGISLD-NSYKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRN 59

Query: 341 YHDPEFKVIQNAIDE 355
            +D   + I   + +
Sbjct: 60  KNDLTREEIVELMRD 74

>2dko_A Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 1nme_A 2h5i_A 2h5j_A 2h65_A 2xyg_A* 2xyh_A 2xyp_A* 2xzd_A 2xzt_A 2y0b_A 3edq_A 1gfw_A 1re1_A* 1pau_A* 1rhk_A* 1rhm_A* 1rhq_A* 1rhr_A* 1rhu_A* 1rhj_A* ... Length = 146

 Score = 74.2 bits (182), Expect = 4e-16
 Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 2/75 (2%)

Query: 361 STVEKDADYYRMDHKHRGLALIFNHEHFD-SPHLKSRAGTGADFENLYTTLVNLGFVVKP 419
           S +  D + Y+MD+   GL +I N+++F  S  + SR+GT  D  NL  T  NL + V+ 
Sbjct: 1   SGISLD-NSYKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRN 59

Query: 420 YHDPEFKVIQNAIDE 434
            +D   + I   + +
Sbjct: 60  KNDLTREEIVELMRD 74

>2ql9_A Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_A* 2ql5_A* 2qlb_A* 2qlf_A 2qlj_A* 3edr_A 3ibc_A 3ibf_A 1i51_A Length = 173

 Score =  167 bits (423), Expect = 4e-50
 Identities = 54/149 (36%), Positives = 85/149 (57%), Gaps = 1/149 (0%)

Query: 4   PVAKSTVEKDADYYRMDHKHRGLALIFNHEHFD-SPHLKSRAGTGADFENLYTTLVNLGF 62
            +  +        Y M+ +  G  +I N+++FD    +  R GT  D E L+    +LGF
Sbjct: 24  SIKTTRDRVPTYQYNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGF 83

Query: 63  VVKPYHDPEFKVIQNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKF 122
            V  Y+D     +Q+ + +A+E+D+T+A CF   +L+HGE+ +++ KD     K+L + F
Sbjct: 84  DVIVYNDCSCAKMQDLLKKASEEDHTNAACFACILLSHGEENVIYGKDGVTPIKDLTAHF 143

Query: 123 TADNCLTLAGKPKLFFIQACQGDKLDAGV 151
             D C TL  KPKLFFIQAC+G +LD G+
Sbjct: 144 RGDRCKTLLEKPKLFFIQACRGTELDDGI 172

>2ql9_A Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_A* 2ql5_A* 2qlb_A* 2qlf_A 2qlj_A* 3edr_A 3ibc_A 3ibf_A 1i51_A Length = 173

 Score = 73.9 bits (181), Expect = 1e-15
 Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 1/85 (1%)

Query: 350 QNAIDEGPVAKSTVEKDADYYRMDHKHRGLALIFNHEHFD-SPHLKSRAGTGADFENLYT 408
           +  +    +  +        Y M+ +  G  +I N+++FD    +  R GT  D E L+ 
Sbjct: 17  KKNVTMRSIKTTRDRVPTYQYNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFK 76

Query: 409 TLVNLGFVVKPYHDPEFKVIQNAID 433
              +LGF V  Y+D     +Q+ + 
Sbjct: 77  CFRSLGFDVIVYNDCSCAKMQDLLK 101

>2ql9_A Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_A* 2ql5_A* 2qlb_A* 2qlf_A 2qlj_A* 3edr_A 3ibc_A 3ibf_A 1i51_A Length = 173

 Score = 73.2 bits (179), Expect = 2e-15
 Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 1/78 (1%)

Query: 278 PVAKSTVEKDADYYRMDHKHRGLALIFNHEHFD-SPHLKSRAGTGADFENLYTTLVNLGF 336
            +  +        Y M+ +  G  +I N+++FD    +  R GT  D E L+    +LGF
Sbjct: 24  SIKTTRDRVPTYQYNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGF 83

Query: 337 VVKPYHDPEFKVIQNAID 354
            V  Y+D     +Q+ + 
Sbjct: 84  DVIVYNDCSCAKMQDLLK 101

>2j32_A Caspase-3; Pro-caspase3, thiol protease, hydrolase, hydrolase-hydrolase inhibitor complex; 1.30A {Homo sapiens} PDB: 2j30_A 3h0e_A* 2j33_A 3pd1_A 2j31_A 3pcx_A 1nms_A* 1nmq_A* 3deh_A* 3dei_A* 3dej_A* 3dek_A* 3pd0_A 3itn_A 1qx3_A Length = 250

 Score =  166 bits (421), Expect = 8e-49
 Identities = 65/183 (35%), Positives = 101/183 (55%), Gaps = 3/183 (1%)

Query: 8   STVEKDADYYRMDHKHRGLALIFNHEHFD-SPHLKSRAGTGADFENLYTTLVNLGFVVKP 66
           S +  D + Y+MD+   GL +I N+++F  S  + SR+GT  D  NL  T  NL + V+ 
Sbjct: 1   SGISLD-NSYKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRN 59

Query: 67  YHDPEFKVIQNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADN 126
            +D   + I   + + +++D++    FV  +L+HGE+GI+   + P   K + + F  D 
Sbjct: 60  KNDLTREEIVELMRDVSKEDHSKRSSFVCVLLSHGEEGIIFGTNGPVDLKKITNFFRGDR 119

Query: 127 CLTLAGKPKLFFIQACQGDKLDAGVTIRTQVDGHPSNTYSIPLHADFLMAYSTISDSPMF 186
           C +L GKPKLF IQAC+G +LD G+   + VD      + IP+ ADFL AYST      +
Sbjct: 120 CRSLTGKPKLFIIQACRGTELDCGIATDSGVDD-DMACHKIPVEADFLYAYSTAPGYYSW 178

Query: 187 GQR 189
              
Sbjct: 179 RNS 181

>2j32_A Caspase-3; Pro-caspase3, thiol protease, hydrolase, hydrolase-hydrolase inhibitor complex; 1.30A {Homo sapiens} PDB: 2j30_A 3h0e_A* 2j33_A 3pd1_A 2j31_A 3pcx_A 1nms_A* 1nmq_A* 3deh_A* 3dei_A* 3dej_A* 3dek_A* 3pd0_A 3itn_A 1qx3_A Length = 250

 Score = 74.3 bits (182), Expect = 3e-15
 Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 2/75 (2%)

Query: 282 STVEKDADYYRMDHKHRGLALIFNHEHFD-SPHLKSRAGTGADFENLYTTLVNLGFVVKP 340
           S +  D + Y+MD+   GL +I N+++F  S  + SR+GT  D  NL  T  NL + V+ 
Sbjct: 1   SGISLD-NSYKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRN 59

Query: 341 YHDPEFKVIQNAIDE 355
            +D   + I   + +
Sbjct: 60  KNDLTREEIVELMRD 74

>2j32_A Caspase-3; Pro-caspase3, thiol protease, hydrolase, hydrolase-hydrolase inhibitor complex; 1.30A {Homo sapiens} PDB: 2j30_A 3h0e_A* 2j33_A 3pd1_A 2j31_A 3pcx_A 1nms_A* 1nmq_A* 3deh_A* 3dei_A* 3dej_A* 3dek_A* 3pd0_A 3itn_A 1qx3_A Length = 250

 Score = 74.3 bits (182), Expect = 3e-15
 Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 2/75 (2%)

Query: 361 STVEKDADYYRMDHKHRGLALIFNHEHFD-SPHLKSRAGTGADFENLYTTLVNLGFVVKP 419
           S +  D + Y+MD+   GL +I N+++F  S  + SR+GT  D  NL  T  NL + V+ 
Sbjct: 1   SGISLD-NSYKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRN 59

Query: 420 YHDPEFKVIQNAIDE 434
            +D   + I   + +
Sbjct: 60  KNDLTREEIVELMRD 74

>3od5_A Caspase-6; caspase domain, apoptotic protease, hydrolase-hydrolase INHI complex; 1.60A {Homo sapiens} PDB: 3k7e_A 3s70_A 3v6m_A 3v6l_A 3nr2_A 2wdp_A 3nkf_A 3s8e_A 3qnw_A* 3p4u_A* 3p45_B 3qnw_B* 3p4u_B* Length = 278

 Score =  167 bits (423), Expect = 9e-49
 Identities = 72/187 (38%), Positives = 100/187 (53%), Gaps = 13/187 (6%)

Query: 7   KSTVEKDADYYRMDHKHRGLALIFNHEHFD-SPHLKSRAGTGADFENLYTTLVNLGFVVK 65
           K  +   A+ Y+MDH+ RG+ALIFNHE F     L  R GT AD +NL     +LGF VK
Sbjct: 4   KREMFDPAEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVK 63

Query: 66  PYHDPEFKVIQNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTAD 125
            ++D + + +   I E +   + DADCFV   L+HGE   ++A D   + + L   F  D
Sbjct: 64  CFNDLKAEELLLKIHEVSTVSHADADCFVCVFLSHGEGNHIYAYDAKIEIQTLTGLFKGD 123

Query: 126 NCLTLAGKPKLFFIQACQGDKLDAGVTIRTQVDG------------HPSNTYSIPLHADF 173
            C +L GKPK+F IQAC+G++ D  V     VD               ++ Y++P  ADF
Sbjct: 124 KCHSLVGKPKIFIIQACRGNQHDVPVIPLDVVDNQTEKLDTNITEVDAASVYTLPAGADF 183

Query: 174 LMAYSTI 180
           LM YS  
Sbjct: 184 LMCYSVA 190

>3od5_A Caspase-6; caspase domain, apoptotic protease, hydrolase-hydrolase INHI complex; 1.60A {Homo sapiens} PDB: 3k7e_A 3s70_A 3v6m_A 3v6l_A 3nr2_A 2wdp_A 3nkf_A 3s8e_A 3qnw_A* 3p4u_A* 3p45_B 3qnw_B* 3p4u_B* Length = 278

 Score = 77.9 bits (191), Expect = 3e-16
 Identities = 32/76 (42%), Positives = 44/76 (57%), Gaps = 1/76 (1%)

Query: 281 KSTVEKDADYYRMDHKHRGLALIFNHEHFD-SPHLKSRAGTGADFENLYTTLVNLGFVVK 339
           K  +   A+ Y+MDH+ RG+ALIFNHE F     L  R GT AD +NL     +LGF VK
Sbjct: 4   KREMFDPAEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVK 63

Query: 340 PYHDPEFKVIQNAIDE 355
            ++D + + +   I E
Sbjct: 64  CFNDLKAEELLLKIHE 79

>3od5_A Caspase-6; caspase domain, apoptotic protease, hydrolase-hydrolase INHI complex; 1.60A {Homo sapiens} PDB: 3k7e_A 3s70_A 3v6m_A 3v6l_A 3nr2_A 2wdp_A 3nkf_A 3s8e_A 3qnw_A* 3p4u_A* 3p45_B 3qnw_B* 3p4u_B* Length = 278

 Score = 77.9 bits (191), Expect = 3e-16
 Identities = 32/76 (42%), Positives = 44/76 (57%), Gaps = 1/76 (1%)

Query: 360 KSTVEKDADYYRMDHKHRGLALIFNHEHFD-SPHLKSRAGTGADFENLYTTLVNLGFVVK 418
           K  +   A+ Y+MDH+ RG+ALIFNHE F     L  R GT AD +NL     +LGF VK
Sbjct: 4   KREMFDPAEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVK 63

Query: 419 PYHDPEFKVIQNAIDE 434
            ++D + + +   I E
Sbjct: 64  CFNDLKAEELLLKIHE 79

>1qtn_A Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_A* 3kjq_A* 2y1l_A 2c2z_A 1qdu_A* 1f9e_A* Length = 164

 Score =  162 bits (411), Expect = 2e-48
 Identities = 53/157 (33%), Positives = 75/157 (47%), Gaps = 9/157 (5%)

Query: 8   STVEKDADYYRMDHKHRGLALIFNHEHFD--------SPHLKSRAGTGADFENLYTTLVN 59
           S  +     Y+M  K RG  LI N+ +F            ++ R GT  D   L TT   
Sbjct: 7   SESQTLDKVYQMKSKPRGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFEE 66

Query: 60  LGFVVKPYHDPEFKVIQNAIDEAAEQDYTDADCFVMAVLTHGE-DGILHAKDVPYKPKNL 118
           L F +KP+ D   + I   +      D+++ DCF+  +L+HG+   I            L
Sbjct: 67  LHFEIKPHDDCTVEQIYEILKIYQLMDHSNMDCFICCILSHGDKGIIYGTDGQEAPIYEL 126

Query: 119 WSKFTADNCLTLAGKPKLFFIQACQGDKLDAGVTIRT 155
            S+FT   C +LAGKPK+FFIQACQGD    G+ + T
Sbjct: 127 TSQFTGLKCPSLAGKPKVFFIQACQGDNYQKGIPVET 163

>1qtn_A Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_A* 3kjq_A* 2y1l_A 2c2z_A 1qdu_A* 1f9e_A* Length = 164

 Score = 71.2 bits (174), Expect = 8e-15
 Identities = 23/82 (28%), Positives = 33/82 (40%), Gaps = 8/82 (9%)

Query: 282 STVEKDADYYRMDHKHRGLALIFNHEHFD--------SPHLKSRAGTGADFENLYTTLVN 333
           S  +     Y+M  K RG  LI N+ +F            ++ R GT  D   L TT   
Sbjct: 7   SESQTLDKVYQMKSKPRGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFEE 66

Query: 334 LGFVVKPYHDPEFKVIQNAIDE 355
           L F +KP+ D   + I   +  
Sbjct: 67  LHFEIKPHDDCTVEQIYEILKI 88

>1qtn_A Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_A* 3kjq_A* 2y1l_A 2c2z_A 1qdu_A* 1f9e_A* Length = 164

 Score = 71.2 bits (174), Expect = 8e-15
 Identities = 23/82 (28%), Positives = 33/82 (40%), Gaps = 8/82 (9%)

Query: 361 STVEKDADYYRMDHKHRGLALIFNHEHFD--------SPHLKSRAGTGADFENLYTTLVN 412
           S  +     Y+M  K RG  LI N+ +F            ++ R GT  D   L TT   
Sbjct: 7   SESQTLDKVYQMKSKPRGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFEE 66

Query: 413 LGFVVKPYHDPEFKVIQNAIDE 434
           L F +KP+ D   + I   +  
Sbjct: 67  LHFEIKPHDDCTVEQIYEILKI 88

>4ehd_A Caspase-3; caspase, apoptosis, allosteric inhibition; 1.58A {Homo sapiens} PDB: 4ehk_A 4ehf_A 4ehn_A 1cp3_A 4ehh_A 4eha_A 4ehl_A 1i3o_A Length = 277

 Score =  165 bits (418), Expect = 5e-48
 Identities = 62/183 (33%), Positives = 99/183 (54%), Gaps = 2/183 (1%)

Query: 6   AKSTVEKDADYYRMDHKHRGLALIFNHEHFD-SPHLKSRAGTGADFENLYTTLVNLGFVV 64
           +  +     + Y+MD+   GL +I N+++F  S  + SR+GT  D  NL  T  NL + V
Sbjct: 26  SMDSGISLDNSYKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEV 85

Query: 65  KPYHDPEFKVIQNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTA 124
           +  +D   + I   + + +++D++    FV  +L+HGE+GI+   + P   K + + F  
Sbjct: 86  RNKNDLTREEIVELMRDVSKEDHSKRSSFVCVLLSHGEEGIIFGTNGPVDLKKITNFFRG 145

Query: 125 DNCLTLAGKPKLFFIQACQGDKLDAGVTIRTQVDGHPSNTYSIPLHADFLMAYSTISDSP 184
           D C +L GKPKLF IQAC+G +LD G+   + VD      + IP+ ADFL A ST     
Sbjct: 146 DRCRSLTGKPKLFIIQACRGTELDCGIETDSGVD-DDMACHKIPVEADFLYACSTAPGYY 204

Query: 185 MFG 187
            + 
Sbjct: 205 SWR 207

>4ehd_A Caspase-3; caspase, apoptosis, allosteric inhibition; 1.58A {Homo sapiens} PDB: 4ehk_A 4ehf_A 4ehn_A 1cp3_A 4ehh_A 4eha_A 4ehl_A 1i3o_A Length = 277

 Score = 72.4 bits (177), Expect = 2e-14
 Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 1/94 (1%)

Query: 342 HDPEFKVIQNAIDEGPVAKSTVEKDADYYRMDHKHRGLALIFNHEHFD-SPHLKSRAGTG 400
                K ++  I  G  +  +     + Y+MD+   GL +I N+++F  S  + SR+GT 
Sbjct: 9   DSKSIKNLEPKIIHGSESMDSGISLDNSYKMDYPEMGLCIIINNKNFHKSTGMTSRSGTD 68

Query: 401 ADFENLYTTLVNLGFVVKPYHDPEFKVIQNAIDE 434
            D  NL  T  NL + V+  +D   + I   + +
Sbjct: 69  VDAANLRETFRNLKYEVRNKNDLTREEIVELMRD 102

>4ehd_A Caspase-3; caspase, apoptosis, allosteric inhibition; 1.58A {Homo sapiens} PDB: 4ehk_A 4ehf_A 4ehn_A 1cp3_A 4ehh_A 4eha_A 4ehl_A 1i3o_A Length = 277

 Score = 72.1 bits (176), Expect = 2e-14
 Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 1/77 (1%)

Query: 280 AKSTVEKDADYYRMDHKHRGLALIFNHEHFD-SPHLKSRAGTGADFENLYTTLVNLGFVV 338
           +  +     + Y+MD+   GL +I N+++F  S  + SR+GT  D  NL  T  NL + V
Sbjct: 26  SMDSGISLDNSYKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEV 85

Query: 339 KPYHDPEFKVIQNAIDE 355
           +  +D   + I   + +
Sbjct: 86  RNKNDLTREEIVELMRD 102

>1f1j_A Caspase-7 protease; caspase-7, cysteine protease, hydrolase, apoptosis, hydrolas hydrolase inhibitor complex; 2.35A {Homo sapiens} SCOP: c.17.1.1 PDB: 1kmc_A 3r5k_A 1i4o_A 1gqf_A 3h1p_A 1shj_A* 1k86_A 1k88_A 1shl_A* Length = 305

 Score =  165 bits (419), Expect = 7e-48
 Identities = 65/186 (34%), Positives = 100/186 (53%), Gaps = 3/186 (1%)

Query: 4   PVAKSTVEKDADYYRMDHKHRGLALIFNHEHFD-SPHLKSRAGTGADFENLYTTLVNLGF 62
            +  +        Y M+ +  G  +I N+++FD    +  R GT  D E L+    +LGF
Sbjct: 49  SIKTTRDRVPTYQYNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGF 108

Query: 63  VVKPYHDPEFKVIQNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKF 122
            V  Y+D     +Q+ + +A+E+D+T+A CF   +L+HGE+ +++ KD     K+L + F
Sbjct: 109 DVIVYNDCSCAKMQDLLKKASEEDHTNAACFACILLSHGEENVIYGKDGVTPIKDLTAHF 168

Query: 123 TADNCLTLAGKPKLFFIQACQGDKLDAGVTIR--TQVDGHPSNTYSIPLHADFLMAYSTI 180
             D   TL  KPKLFFIQAC+G +LD G+        D   +  Y IP+ ADFL AYST+
Sbjct: 169 RGDRSKTLLEKPKLFFIQACRGTELDDGIQADSGPINDTDANPRYKIPVEADFLFAYSTV 228

Query: 181 SDSPMF 186
                +
Sbjct: 229 PGYYSW 234

>1f1j_A Caspase-7 protease; caspase-7, cysteine protease, hydrolase, apoptosis, hydrolas hydrolase inhibitor complex; 2.35A {Homo sapiens} SCOP: c.17.1.1 PDB: 1kmc_A 3r5k_A 1i4o_A 1gqf_A 3h1p_A 1shj_A* 1k86_A 1k88_A 1shl_A* Length = 305

 Score = 76.0 bits (186), Expect = 1e-15
 Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 1/84 (1%)

Query: 350 QNAIDEGPVAKSTVEKDADYYRMDHKHRGLALIFNHEHFD-SPHLKSRAGTGADFENLYT 408
           +  +    +  +        Y M+ +  G  +I N+++FD    +  R GT  D E L+ 
Sbjct: 42  KKNVTMRSIKTTRDRVPTYQYNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFK 101

Query: 409 TLVNLGFVVKPYHDPEFKVIQNAI 432
              +LGF V  Y+D     +Q+ +
Sbjct: 102 CFRSLGFDVIVYNDCSCAKMQDLL 125

>1f1j_A Caspase-7 protease; caspase-7, cysteine protease, hydrolase, apoptosis, hydrolas hydrolase inhibitor complex; 2.35A {Homo sapiens} SCOP: c.17.1.1 PDB: 1kmc_A 3r5k_A 1i4o_A 1gqf_A 3h1p_A 1shj_A* 1k86_A 1k88_A 1shl_A* Length = 305

 Score = 75.6 bits (185), Expect = 3e-15
 Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 1/77 (1%)

Query: 278 PVAKSTVEKDADYYRMDHKHRGLALIFNHEHFD-SPHLKSRAGTGADFENLYTTLVNLGF 336
            +  +        Y M+ +  G  +I N+++FD    +  R GT  D E L+    +LGF
Sbjct: 49  SIKTTRDRVPTYQYNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGF 108

Query: 337 VVKPYHDPEFKVIQNAI 353
            V  Y+D     +Q+ +
Sbjct: 109 DVIVYNDCSCAKMQDLL 125

>1pyo_A Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 3rjm_A* 2p2c_A 3r5j_A 3r6g_A 3r6l_A 3r7b_A 3r7n_A 3r7s_A Length = 167

 Score =  160 bits (405), Expect = 2e-47
 Identities = 45/146 (30%), Positives = 70/146 (47%), Gaps = 3/146 (2%)

Query: 11  EKDADYYRMDHKHRGLALIFNHEHFD-SPHLKSRAGTGADFENLYTTLVNLGFVVKPYHD 69
                 YR+  + RGLAL+ ++ HF     L+ R+G   D   L T    LG+ V    D
Sbjct: 20  THFQLAYRLQSRPRGLALVLSNVHFTGEKELEFRSGGDVDHSTLVTLFKLLGYDVHVLCD 79

Query: 70  PEFKVIQNAIDEAAE-QDYTDADCFVMAVLTHGE-DGILHAKDVPYKPKNLWSKFTADNC 127
              + +Q  +   A+   +   D  ++A+L+HG    I        + + ++  F   NC
Sbjct: 80  QTAQEMQEKLQNFAQLPAHRVTDSCIVALLSHGVEGAIYGVDGKLLQLQEVFQLFDNANC 139

Query: 128 LTLAGKPKLFFIQACQGDKLDAGVTI 153
            +L  KPK+FFIQAC+GD+ D GV  
Sbjct: 140 PSLQNKPKMFFIQACRGDETDRGVDQ 165

>1pyo_A Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 3rjm_A* 2p2c_A 3r5j_A 3r6g_A 3r6l_A 3r7b_A 3r7n_A 3r7s_A Length = 167

 Score = 76.5 bits (188), Expect = 1e-16
 Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 3/85 (3%)

Query: 285 EKDADYYRMDHKHRGLALIFNHEHFD-SPHLKSRAGTGADFENLYTTLVNLGFVVKPYHD 343
                 YR+  + RGLAL+ ++ HF     L+ R+G   D   L T    LG+ V    D
Sbjct: 20  THFQLAYRLQSRPRGLALVLSNVHFTGEKELEFRSGGDVDHSTLVTLFKLLGYDVHVLCD 79

Query: 344 PEFKVIQNAIDEGPVAKSTVEKDAD 368
              + +Q  +     A+    +  D
Sbjct: 80  QTAQEMQEKLQN--FAQLPAHRVTD 102

>1pyo_A Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 3rjm_A* 2p2c_A 3r5j_A 3r6g_A 3r6l_A 3r7b_A 3r7n_A 3r7s_A Length = 167

 Score = 76.5 bits (188), Expect = 1e-16
 Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 1/72 (1%)

Query: 364 EKDADYYRMDHKHRGLALIFNHEHFD-SPHLKSRAGTGADFENLYTTLVNLGFVVKPYHD 422
                 YR+  + RGLAL+ ++ HF     L+ R+G   D   L T    LG+ V    D
Sbjct: 20  THFQLAYRLQSRPRGLALVLSNVHFTGEKELEFRSGGDVDHSTLVTLFKLLGYDVHVLCD 79

Query: 423 PEFKVIQNAIDE 434
              + +Q  +  
Sbjct: 80  QTAQEMQEKLQN 91

>3p45_A Caspase-6; protease, huntington'S disease, physio PH, competitive inhibition, hydrolase; 2.53A {Homo sapiens} Length = 179

 Score = 67.9 bits (165), Expect = 2e-13
 Identities = 33/86 (38%), Positives = 47/86 (54%), Gaps = 1/86 (1%)

Query: 350 QNAIDEGPVAKSTVEKDADYYRMDHKHRGLALIFNHEHFD-SPHLKSRAGTGADFENLYT 408
           +N  +     K  +   A+ Y+MDH+ RG+ALIFNHE F     L  R GT AD +NL  
Sbjct: 17  ENMTETDAFYKREMFDPAEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTR 76

Query: 409 TLVNLGFVVKPYHDPEFKVIQNAIDE 434
              +LGF VK ++D + + +   I E
Sbjct: 77  RFSDLGFEVKCFNDLKAEELLLKIHE 102

>3p45_A Caspase-6; protease, huntington'S disease, physio PH, competitive inhibition, hydrolase; 2.53A {Homo sapiens} Length = 179

 Score = 67.5 bits (164), Expect = 2e-13
 Identities = 32/76 (42%), Positives = 44/76 (57%), Gaps = 1/76 (1%)

Query: 281 KSTVEKDADYYRMDHKHRGLALIFNHEHFD-SPHLKSRAGTGADFENLYTTLVNLGFVVK 339
           K  +   A+ Y+MDH+ RG+ALIFNHE F     L  R GT AD +NL     +LGF VK
Sbjct: 27  KREMFDPAEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVK 86

Query: 340 PYHDPEFKVIQNAIDE 355
            ++D + + +   I E
Sbjct: 87  CFNDLKAEELLLKIHE 102

>2fp3_A Caspase NC; apoptosis, initiator caspase activation, dimerization, active site conformation, hydrolysis/apoptosis complex; 2.50A {Drosophila melanogaster} Length = 316

 Score =  152 bits (385), Expect = 9e-43
 Identities = 42/195 (21%), Positives = 72/195 (36%), Gaps = 26/195 (13%)

Query: 11  EKDADYYRMDHK-HRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHD 69
                 Y+M  + +RG+ L+ N   +     + R G   D ++L      L F + PY +
Sbjct: 47  SAILGTYKMQSRFNRGVLLMVNIMDYPD-QNRRRIGAEKDSKSLIHLFQELNFTIFPYGN 105

Query: 70  PEFKVIQNAIDEAAEQDYT-DADCFVMAVLTHG-----EDGILHAKDVPYKPKNLWSKFT 123
                    +       Y  + +CFVM ++THG     ++ +          + +   F 
Sbjct: 106 VNQDQFFKLLTMVTSSSYVQNTECFVMVLMTHGNSVEGKEKVEFRDGSVVDMQKIKDHFQ 165

Query: 124 ADNCLTLAGKPKLFFIQACQGDKLDAGVTIR------------------TQVDGHPSNTY 165
              C  L  KPK+      +GD+ D G                      TQ +G PS + 
Sbjct: 166 TAKCPYLVNKPKVLMFPFARGDEYDLGHPKNQGNLMEPVYTAQEEKWPDTQTEGIPSPST 225

Query: 166 SIPLHADFLMAYSTI 180
           ++P  AD L+ Y+  
Sbjct: 226 NVPSLADTLVCYANT 240

>2fp3_A Caspase NC; apoptosis, initiator caspase activation, dimerization, active site conformation, hydrolysis/apoptosis complex; 2.50A {Drosophila melanogaster} Length = 316

 Score = 69.8 bits (170), Expect = 2e-13
 Identities = 16/85 (18%), Positives = 32/85 (37%), Gaps = 4/85 (4%)

Query: 285 EKDADYYRMDHK-HRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHD 343
                 Y+M  + +RG+ L+ N   +     + R G   D ++L      L F + PY +
Sbjct: 47  SAILGTYKMQSRFNRGVLLMVNIMDYPD-QNRRRIGAEKDSKSLIHLFQELNFTIFPYGN 105

Query: 344 PEFKVIQNAIDEGPVAKSTVEKDAD 368
                    +    V  S+  ++ +
Sbjct: 106 VNQDQFFKLLTM--VTSSSYVQNTE 128

>2fp3_A Caspase NC; apoptosis, initiator caspase activation, dimerization, active site conformation, hydrolysis/apoptosis complex; 2.50A {Drosophila melanogaster} Length = 316

 Score = 69.0 bits (168), Expect = 4e-13
 Identities = 14/72 (19%), Positives = 26/72 (36%), Gaps = 2/72 (2%)

Query: 364 EKDADYYRMDHK-HRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHD 422
                 Y+M  + +RG+ L+ N   +     + R G   D ++L      L F + PY +
Sbjct: 47  SAILGTYKMQSRFNRGVLLMVNIMDYPD-QNRRRIGAEKDSKSLIHLFQELNFTIFPYGN 105

Query: 423 PEFKVIQNAIDE 434
                    +  
Sbjct: 106 VNQDQFFKLLTM 117

>3h11_B Caspase-8; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} PDB: 2k7z_A 1i4e_B 2fun_B 2c2z_B* Length = 271

 Score =  149 bits (378), Expect = 3e-42
 Identities = 60/197 (30%), Positives = 90/197 (45%), Gaps = 17/197 (8%)

Query: 8   STVEKDADYYRMDHKHRGLALIFNHEHFDS--------PHLKSRAGTGADFENLYTTLVN 59
           S  +     Y+M  K RG  LI N+ +F            ++ R GT  D   L TT   
Sbjct: 1   SESQTLDKVYQMKSKPRGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFEE 60

Query: 60  LGFVVKPYHDPEFKVIQNAIDEAAEQDYTDADCFVMAVLTHG-EDGILHAKDVPYKPKNL 118
           L F +KP+ D   + I   +      D+++ DCF+  +L+HG +  I            L
Sbjct: 61  LHFEIKPHDDCTVEQIYEILKIYQLMDHSNMDCFICCILSHGDKGIIYGTDGQEAPIYEL 120

Query: 119 WSKFTADNCLTLAGKPKLFFIQACQGDKLDAGVTIR--------TQVDGHPSNTYSIPLH 170
            S+FT   C +LAGKPK+FFIQACQGD    G+ +          ++      T  IP  
Sbjct: 121 TSQFTGLKCPSLAGKPKVFFIQACQGDNYQKGIPVETASEEQPYLEMALSSPQTRYIPDE 180

Query: 171 ADFLMAYSTISDSPMFG 187
           ADFL+  +T+++   + 
Sbjct: 181 ADFLLGMATVNNCVSYR 197

>3h11_B Caspase-8; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} PDB: 2k7z_A 1i4e_B 2fun_B 2c2z_B* Length = 271

 Score = 70.2 bits (171), Expect = 9e-14
 Identities = 23/82 (28%), Positives = 33/82 (40%), Gaps = 8/82 (9%)

Query: 282 STVEKDADYYRMDHKHRGLALIFNHEHFDS--------PHLKSRAGTGADFENLYTTLVN 333
           S  +     Y+M  K RG  LI N+ +F            ++ R GT  D   L TT   
Sbjct: 1   SESQTLDKVYQMKSKPRGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFEE 60

Query: 334 LGFVVKPYHDPEFKVIQNAIDE 355
           L F +KP+ D   + I   +  
Sbjct: 61  LHFEIKPHDDCTVEQIYEILKI 82

>3h11_B Caspase-8; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} PDB: 2k7z_A 1i4e_B 2fun_B 2c2z_B* Length = 271

 Score = 70.2 bits (171), Expect = 9e-14
 Identities = 23/82 (28%), Positives = 33/82 (40%), Gaps = 8/82 (9%)

Query: 361 STVEKDADYYRMDHKHRGLALIFNHEHFDS--------PHLKSRAGTGADFENLYTTLVN 412
           S  +     Y+M  K RG  LI N+ +F            ++ R GT  D   L TT   
Sbjct: 1   SESQTLDKVYQMKSKPRGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFEE 60

Query: 413 LGFVVKPYHDPEFKVIQNAIDE 434
           L F +KP+ D   + I   +  
Sbjct: 61  LHFEIKPHDDCTVEQIYEILKI 82

>1nw9_B Caspase 9, apoptosis-related cysteine protease; XIAP, caspase inhibition, caspase activation, dimerization; 2.40A {Homo sapiens} SCOP: c.17.1.1 PDB: 1jxq_A* 2ar9_A Length = 277

 Score =  149 bits (376), Expect = 6e-42
 Identities = 55/206 (26%), Positives = 86/206 (41%), Gaps = 32/206 (15%)

Query: 7   KSTVEKDADYYRMDHKHRGLALIFNHEHFD-SPHLKSRAGTGADFENLYTTLVNLGFVVK 65
           +S        Y +  +  G  LI N+ +F     L++R G+  D E L     +L F+V+
Sbjct: 4   ESLRGNADLAYILSMEPCGHCLIINNVNFCRESGLRTRTGSNIDCEKLRRRFSSLHFMVE 63

Query: 66  PYHDPEFKVIQNAIDEAAEQDYTDADCFVMAVLTHGE--------DGILHAKDVPYKPKN 117
              D   K +  A+ E A QD+   DC V+ +L+HG           +      P   + 
Sbjct: 64  VKGDLTAKKMVLALLELARQDHGALDCCVVVILSHGCQASHLQFPGAVYGTDGCPVSVEK 123

Query: 118 LWSKFTADNCLTLAGKPKLFFIQACQGDKLDAGVTI------------RTQVDGHP---- 161
           + + F   +C +L GKPKLFFIQAC G++ D G  +              + D  P    
Sbjct: 124 IVNIFNGTSCPSLGGKPKLFFIQACGGEQKDHGFEVASTSPEDESPGSNPEPDATPFQEG 183

Query: 162 -------SNTYSIPLHADFLMAYSTI 180
                      S+P  +D  ++YST 
Sbjct: 184 LRTFDQLDAISSLPTPSDIFVSYSTF 209

>1nw9_B Caspase 9, apoptosis-related cysteine protease; XIAP, caspase inhibition, caspase activation, dimerization; 2.40A {Homo sapiens} SCOP: c.17.1.1 PDB: 1jxq_A* 2ar9_A Length = 277

 Score = 75.9 bits (186), Expect = 1e-15
 Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 1/76 (1%)

Query: 281 KSTVEKDADYYRMDHKHRGLALIFNHEHFD-SPHLKSRAGTGADFENLYTTLVNLGFVVK 339
           +S        Y +  +  G  LI N+ +F     L++R G+  D E L     +L F+V+
Sbjct: 4   ESLRGNADLAYILSMEPCGHCLIINNVNFCRESGLRTRTGSNIDCEKLRRRFSSLHFMVE 63

Query: 340 PYHDPEFKVIQNAIDE 355
              D   K +  A+ E
Sbjct: 64  VKGDLTAKKMVLALLE 79

>1nw9_B Caspase 9, apoptosis-related cysteine protease; XIAP, caspase inhibition, caspase activation, dimerization; 2.40A {Homo sapiens} SCOP: c.17.1.1 PDB: 1jxq_A* 2ar9_A Length = 277

 Score = 75.9 bits (186), Expect = 1e-15
 Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 1/76 (1%)

Query: 360 KSTVEKDADYYRMDHKHRGLALIFNHEHFD-SPHLKSRAGTGADFENLYTTLVNLGFVVK 418
           +S        Y +  +  G  LI N+ +F     L++R G+  D E L     +L F+V+
Sbjct: 4   ESLRGNADLAYILSMEPCGHCLIINNVNFCRESGLRTRTGSNIDCEKLRRRFSSLHFMVE 63

Query: 419 PYHDPEFKVIQNAIDE 434
              D   K +  A+ E
Sbjct: 64  VKGDLTAKKMVLALLE 79

>3h11_A CAsp8 and FADD-like apoptosis regulator; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} PDB: 3h13_A Length = 272

 Score =  142 bits (360), Expect = 1e-39
 Identities = 41/191 (21%), Positives = 72/191 (37%), Gaps = 27/191 (14%)

Query: 10  VEKDADYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHD 69
                + Y+M  K  G+ LI +    ++             E L  T  +LG+ V+ +  
Sbjct: 29  QSIPEERYKMKSKPLGICLIIDCIGNET-------------ELLRDTFTSLGYEVQKFLH 75

Query: 70  PEFKVIQNAIDE-AAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKP---KNLWSKFTAD 125
                I   + + A   ++ D D FV  +++ G    ++  D  +      ++   F  D
Sbjct: 76  LSMHGISQILGQFACMPEHRDYDSFVCVLVSRGGSQSVYGVDQTHSGLPLHHIRRMFMGD 135

Query: 126 NCLTLAGKPKLFFIQACQGDKLDAGVTIRTQVDG----------HPSNTYSIPLHADFLM 175
           +C  LAGKPK+FFIQ     +     +   +VDG                ++   ADF  
Sbjct: 136 SCPYLAGKPKMFFIQNYVVSEGQLENSSLLEVDGPAMKNVEFKAQKRGLCTVHREADFFW 195

Query: 176 AYSTISDSPMF 186
           +  T   S + 
Sbjct: 196 SLCTADMSLLE 206

>3h11_A CAsp8 and FADD-like apoptosis regulator; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} PDB: 3h13_A Length = 272

 Score = 57.8 bits (139), Expect = 1e-09
 Identities = 13/71 (18%), Positives = 24/71 (33%), Gaps = 13/71 (18%)

Query: 284 VEKDADYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHD 343
                + Y+M  K  G+ LI +    ++             E L  T  +LG+ V+ +  
Sbjct: 29  QSIPEERYKMKSKPLGICLIIDCIGNET-------------ELLRDTFTSLGYEVQKFLH 75

Query: 344 PEFKVIQNAID 354
                I   + 
Sbjct: 76  LSMHGISQILG 86

>3h11_A CAsp8 and FADD-like apoptosis regulator; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} PDB: 3h13_A Length = 272

 Score = 57.8 bits (139), Expect = 1e-09
 Identities = 13/71 (18%), Positives = 24/71 (33%), Gaps = 13/71 (18%)

Query: 363 VEKDADYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHD 422
                + Y+M  K  G+ LI +    ++             E L  T  +LG+ V+ +  
Sbjct: 29  QSIPEERYKMKSKPLGICLIIDCIGNET-------------ELLRDTFTSLGYEVQKFLH 75

Query: 423 PEFKVIQNAID 433
                I   + 
Sbjct: 76  LSMHGISQILG 86

>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ; 1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A* 1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A* 2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A* 3d6h_A* 2hbz_A* 2hbr_A* ... Length = 178

 Score =  138 bits (349), Expect = 4e-39
 Identities = 36/151 (23%), Positives = 62/151 (41%), Gaps = 11/151 (7%)

Query: 7   KSTVEKDADYYRMDHKH--RGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVV 64
           +   +K A+ Y +  K     LALI  +E FD   +  R G   D   +   L NLG+ V
Sbjct: 24  RIWKQKSAEIYPIMDKSSRTRLALIICNEEFD--SIPRRTGAEVDITGMTMLLQNLGYSV 81

Query: 65  KPYHDPEFKVIQNAIDE-AAEQDYTDADCFVMAVLTHGEDGILHAKD------VPYKPKN 117
               +     +   ++  A   ++  +D   +  ++HG    +  K          +   
Sbjct: 82  DVKKNLTASDMTTELEAFAHRPEHKTSDSTFLVFMSHGIREGICGKKHSEQVPDILQLNA 141

Query: 118 LWSKFTADNCLTLAGKPKLFFIQACQGDKLD 148
           +++     NC +L  KPK+  IQAC+GD   
Sbjct: 142 IFNMLNTKNCPSLKDKPKVIIIQACRGDSPG 172

>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ; 1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A* 1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A* 2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A* 3d6h_A* 2hbz_A* 2hbr_A* ... Length = 178

 Score = 71.6 bits (175), Expect = 8e-15
 Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 6/90 (6%)

Query: 281 KSTVEKDADYYRMDHKH--RGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVV 338
           +   +K A+ Y +  K     LALI  +E FD   +  R G   D   +   L NLG+ V
Sbjct: 24  RIWKQKSAEIYPIMDKSSRTRLALIICNEEFD--SIPRRTGAEVDITGMTMLLQNLGYSV 81

Query: 339 KPYHDPEFKVIQNAIDEGPVAKSTVEKDAD 368
               +     +   ++    A     K +D
Sbjct: 82  DVKKNLTASDMTTELEA--FAHRPEHKTSD 109

>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ; 1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A* 1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A* 2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A* 3d6h_A* 2hbz_A* 2hbr_A* ... Length = 178

 Score = 70.8 bits (173), Expect = 2e-14
 Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 4/77 (5%)

Query: 360 KSTVEKDADYYRMDHKH--RGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVV 417
           +   +K A+ Y +  K     LALI  +E FD   +  R G   D   +   L NLG+ V
Sbjct: 24  RIWKQKSAEIYPIMDKSSRTRLALIICNEEFD--SIPRRTGAEVDITGMTMLLQNLGYSV 81

Query: 418 KPYHDPEFKVIQNAIDE 434
               +     +   ++ 
Sbjct: 82  DVKKNLTASDMTTELEA 98

>3e4c_A Caspase-1; zymogen, inflammasome, ICE, IL-1B, innate immunity, apoptosis, hydrolase, protease protease; 2.05A {Homo sapiens} Length = 302

 Score =  141 bits (356), Expect = 9e-39
 Identities = 40/196 (20%), Positives = 73/196 (37%), Gaps = 22/196 (11%)

Query: 7   KSTVEKDADYYRMDHKH--RGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVV 64
           +   +K A+ Y +  K     LALI  +E FD   +  R G   D   +   L NLG+ V
Sbjct: 41  RIWKQKSAEIYPIMDKSSRTRLALIICNEEFD--SIPRRTGAEVDITGMTMLLQNLGYSV 98

Query: 65  KPYHDPEFKVIQNAIDEAAEQ-DYTDADCFVMAVLTHGEDGILHAKD------VPYKPKN 117
               +     +   ++  A + ++  +D   +  ++HG    +  K          +   
Sbjct: 99  DVKKNLTASDMTTELEAFAHRPEHKTSDSTFLVFMSHGIREGICGKKHSEQVPDILQLNA 158

Query: 118 LWSKFTADNCLTLAGKPKLFFIQACQGDKLDAGV-----------TIRTQVDGHPSNTYS 166
           +++     NC +L  KPK+  IQA +GD                 ++ T  +        
Sbjct: 159 IFNMLNTKNCPSLKDKPKVIIIQAARGDSPGVVWFKDSVGVSGNLSLPTTEEFEDDAIKK 218

Query: 167 IPLHADFLMAYSTISD 182
             +  DF+   S+  D
Sbjct: 219 AHIEKDFIAFCSSTPD 234

>3e4c_A Caspase-1; zymogen, inflammasome, ICE, IL-1B, innate immunity, apoptosis, hydrolase, protease protease; 2.05A {Homo sapiens} Length = 302

 Score = 72.4 bits (177), Expect = 2e-14
 Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 6/90 (6%)

Query: 281 KSTVEKDADYYRMDHKH--RGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVV 338
           +   +K A+ Y +  K     LALI  +E FD   +  R G   D   +   L NLG+ V
Sbjct: 41  RIWKQKSAEIYPIMDKSSRTRLALIICNEEFD--SIPRRTGAEVDITGMTMLLQNLGYSV 98

Query: 339 KPYHDPEFKVIQNAIDEGPVAKSTVEKDAD 368
               +     +   ++    A     K +D
Sbjct: 99  DVKKNLTASDMTTELEA--FAHRPEHKTSD 126

>3e4c_A Caspase-1; zymogen, inflammasome, ICE, IL-1B, innate immunity, apoptosis, hydrolase, protease protease; 2.05A {Homo sapiens} Length = 302

 Score = 70.9 bits (173), Expect = 8e-14
 Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 4/77 (5%)

Query: 360 KSTVEKDADYYRMDHKH--RGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVV 417
           +   +K A+ Y +  K     LALI  +E FD   +  R G   D   +   L NLG+ V
Sbjct: 41  RIWKQKSAEIYPIMDKSSRTRLALIICNEEFD--SIPRRTGAEVDITGMTMLLQNLGYSV 98

Query: 418 KPYHDPEFKVIQNAIDE 434
               +     +   ++ 
Sbjct: 99  DVKKNLTASDMTTELEA 115

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 4e-04
 Identities = 74/580 (12%), Positives = 159/580 (27%), Gaps = 180/580 (31%)

Query: 13  DADYYRMDHKHRGLALIFNH---EHFDSPHLK---SRAGTGADFENLY---TTLVNLGFV 63
           D +     ++++ +  +F     ++FD   ++       +  + +++      +     +
Sbjct: 8   DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL 67

Query: 64  VKPYHDPEFKVIQNAIDEAAEQDYTDADCFVMAVL-THGEDGILHAKDVPYKPKNLWS-- 120
                  + +++Q  ++E    +Y     F+M+ + T      +  +    +   L++  
Sbjct: 68  FWTLLSKQEEMVQKFVEEVLRINYK----FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN 123

Query: 121 -KFTADNCLTLAGKPKLFFIQACQGDKLDAGVTIRTQVDGHPSNTYSIPLHADFLMAYST 179
             F   N   L  +P L   QA    +    V     +DG   +  +  +  D  ++Y  
Sbjct: 124 QVFAKYNVSRL--QPYLKLRQALLELRPAKNVL----IDGVLGSGKTW-VALDVCLSYKV 176

Query: 180 IS--DSPMFGQRFGLKDKCSKVVSKTYQVMSSNVDTSNGECQTDGHESHTNGSAVGKDEG 237
               D  +F           + V +  Q +   +D  N   ++D   +        + E 
Sbjct: 177 QCKMDFKIFWLNLK-NCNSPETVLEMLQKLLYQID-PNWTSRSDHSSNIKLRIHSIQAEL 234

Query: 238 DVLGFKFQTDGHESHTNG----SAVGKDEGDVLGFNFG-R----TRMKGPVAKSTVEKDA 288
             L  K      + + N       V ++      FN   +    TR K  V         
Sbjct: 235 RRL-LK-----SKPYENCLLVLLNV-QNAKAWNAFNLSCKILLTTRFKQ-VTDFLSAATT 286

Query: 289 DYYRMDHKHRG---------LALIFNHEHFDSPHLKSR------AGTGA---DFENLYTT 330
            +  +DH             L    +    D P           +       D    +  
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN 346

Query: 331 LVNLGF------------VVKP------YHD----------PEFKVIQ----NAIDEGP- 357
             ++              V++P      +            P   ++     + I     
Sbjct: 347 WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPT-ILLSLIWFDVIKSDVM 405

Query: 358 ------VAKSTVEKDAD---YYRMD---------------HK----HRGLALIFNHEHFD 389
                    S VEK                          H+    H  +   F+ +   
Sbjct: 406 VVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLI 465

Query: 390 SP------------HLKS--RAGTGADFENLYTTLVNLGFV------------------- 416
            P            HLK+         F  ++   ++  F+                   
Sbjct: 466 PPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF---LDFRFLEQKIRHDSTAWNASGSILN 522

Query: 417 ----VKPY------HDPEFKVIQNAIDEGKDALIPSLFLP 446
               +K Y      +DP+++ + NAI +         FLP
Sbjct: 523 TLQQLKFYKPYICDNDPKYERLVNAILD---------FLP 553

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	455
3sir_A	259	Caspase; hydrolase; 2.68A {Drosophila melanogaster	100.0
3od5_A	278	Caspase-6; caspase domain, apoptotic protease, hyd	100.0
1m72_A	272	Caspase-1; caspase, cysteine protease, hydrolase-h	100.0
3h11_B	271	Caspase-8; cell death, apoptosis, caspase, alterna	100.0
2nn3_C	310	Caspase-1; cysteine protease, hydrolase; 3.00A {Sp	100.0
1nw9_B	277	Caspase 9, apoptosis-related cysteine protease; XI	100.0
4ehd_A	277	Caspase-3; caspase, apoptosis, allosteric inhibiti	100.0
2j32_A	250	Caspase-3; Pro-caspase3, thiol protease, hydrolase	100.0
2fp3_A	316	Caspase NC; apoptosis, initiator caspase activatio	100.0
1f1j_A	305	Caspase-7 protease; caspase-7, cysteine protease,	100.0
3e4c_A	302	Caspase-1; zymogen, inflammasome, ICE, IL-1B, inna	100.0
3h11_A	272	CAsp8 and FADD-like apoptosis regulator; cell deat	100.0
3p45_A	179	Caspase-6; protease, huntington'S disease, physio	100.0
2dko_A	146	Caspase-3; low barrier hydrogen bond, caspase, dru	100.0
2ql9_A	173	Caspase-7; cysteine protease, apoptosis, thiol pro	100.0
1qtn_A	164	Caspase-8; apoptosis, dithiane-DIOL, caspase, cyst	100.0
1pyo_A	167	Caspase-2; apoptosis, caspase, alpha-beta, thiol p	100.0
2h54_A	178	Caspase-1; allosteric site, dimer interface, hydro	100.0
3uoa_B	390	Mucosa-associated lymphoid tissue lymphoma transl	99.96
3p45_A	179	Caspase-6; protease, huntington'S disease, physio	99.92
2dko_A	146	Caspase-3; low barrier hydrogen bond, caspase, dru	99.9
1qtn_A	164	Caspase-8; apoptosis, dithiane-DIOL, caspase, cyst	99.89
2ql9_A	173	Caspase-7; cysteine protease, apoptosis, thiol pro	99.89
2nn3_C	310	Caspase-1; cysteine protease, hydrolase; 3.00A {Sp	99.89
1pyo_A	167	Caspase-2; apoptosis, caspase, alpha-beta, thiol p	99.88
3od5_A	278	Caspase-6; caspase domain, apoptotic protease, hyd	99.87
3sir_A	259	Caspase; hydrolase; 2.68A {Drosophila melanogaster	99.87
1m72_A	272	Caspase-1; caspase, cysteine protease, hydrolase-h	99.86
3h11_B	271	Caspase-8; cell death, apoptosis, caspase, alterna	99.85
1nw9_B	277	Caspase 9, apoptosis-related cysteine protease; XI	99.82
4ehd_A	277	Caspase-3; caspase, apoptosis, allosteric inhibiti	99.82
2h54_A	178	Caspase-1; allosteric site, dimer interface, hydro	99.82
2j32_A	250	Caspase-3; Pro-caspase3, thiol protease, hydrolase	99.79
1f1j_A	305	Caspase-7 protease; caspase-7, cysteine protease,	99.79
2fp3_A	316	Caspase NC; apoptosis, initiator caspase activatio	99.79
3e4c_A	302	Caspase-1; zymogen, inflammasome, ICE, IL-1B, inna	99.72
3h11_A	272	CAsp8 and FADD-like apoptosis regulator; cell deat	99.7
3bij_A	285	Uncharacterized protein GSU0716; alpha-beta protei	99.43
1sc3_B	88	Interleukin-1 beta convertase; malonate-bound casp	99.14
1pyo_B	105	Caspase-2; apoptosis, caspase, alpha-beta, thiol p	99.03
2ql9_B	97	Caspase-7; cysteine protease, apoptosis, thiol pro	99.0
2dko_B	103	Caspase-3; low barrier hydrogen bond, caspase, dru	98.99
1qtn_B	95	Caspase-8; apoptosis, dithiane-DIOL, caspase, cyst	98.99
3rjm_B	117	Caspase-2; caspase-2, caspase, hydrolase-hydrolase	98.97
2xzd_B	118	Caspase-3; hydrolase-protein binding complex, de n	98.94
4af8_A	367	Metacaspase MCA2; hydrolase, cysteine peptidase, c	98.82
3uoa_B	390	Mucosa-associated lymphoid tissue lymphoma transl	98.62
4f6o_A	350	Metacaspase-1; rossmann fold, hydrolase; HET: DFH;	98.56
3bij_A	285	Uncharacterized protein GSU0716; alpha-beta protei	95.56
4f6o_A	350	Metacaspase-1; rossmann fold, hydrolase; HET: DFH;	91.6
4af8_A	367	Metacaspase MCA2; hydrolase, cysteine peptidase, c	89.86

>3sir_A Caspase; hydrolase; 2.68A {Drosophila melanogaster} PDB: 3sip_A

Probab=100.00  E-value=2.6e-54  Score=423.38  Aligned_cols=208  Identities=48%  Similarity=0.806  Sum_probs=170.3

Q ss_pred             ccccCCCCceeCCCCceeEEEEEeCCCCCCCCCCCCCChHHhHHHHHHHHHhCCcEEEEecCCCHHHHHHHHHHHHhhcC
Q psy15857          8 STVEKDADYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVIQNAIDEAAEQDY   87 (455)
Q Consensus         8 ~~~~~~~~~Y~m~~~~~G~aLIInN~~F~~~~l~~R~Gs~~D~~~L~~~F~~LGF~V~~~~nlt~~em~~~l~~~s~~d~   87 (455)
                      ++.++.++.|+|+++++|+||||||.+|....+++|.||++|+++|+++|++|||+|+++.|+|++||.+.|++|++++|
T Consensus         4 ~~~~~~~~~Y~m~~~~rg~aLIInn~~f~~~~l~~R~G~~~D~~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~~~~~~h   83 (259)
T 3sir_A            4 SVTDRHAAEYNMRHKNRGMALIFNHEHFEVPTLKSRAGTNVDCENLTRVLKQLDFEVTVYKDCRYKDILRTIEYSASQNH   83 (259)
T ss_dssp             SCCCSSCSBCCCCSSEEEEEEEEEECCC-----------CCHHHHHHHHHHHTTCEEEEEEECSHHHHHHHHHHHHTSCC
T ss_pred             CCCCCccCcCCCCCCCccEEEEEeccccCCCCCCCCCCcHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHhhc
Confidence            45788999999999999999999999998656899999999999999999999999999999999999999999998889


Q ss_pred             CCCceEEEEEecCCCCceeeeeCCccChhhhHHhhccccccccCCCceEEEEecccCCccCCCceee---eccCCCCCCC
Q psy15857         88 TDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAGKPKLFFIQACQGDKLDAGVTIR---TQVDGHPSNT  164 (455)
Q Consensus        88 ~~~d~~vvvilSHG~~g~I~g~D~~v~~~~I~~~F~~~~c~~L~gKPKlFfiQACRG~~~d~gv~~~---~~~d~~~~~~  164 (455)
                      ..+||++|||||||.+|.|||+|+.+++++|+++|++.+||+|+|||||||||||||++.+.|+...   .++|+.....
T Consensus        84 ~~~d~~v~~~lsHG~~g~i~~~D~~v~l~~i~~~f~~~~cpsL~gKPKlf~iQACRG~~~~~g~~~~~~~~~~dg~~~~~  163 (259)
T 3sir_A           84 SDSDCILVAILSHGEMGYIYAKDTQYKLDNIWSFFTANHCPSLAGKPKLFFIQACQGDRLDGGVTMQRSQTETDGDSSMS  163 (259)
T ss_dssp             TTEEEEEEEEEECTTCCCCCCTTHHHHHHHTTGGGSTTTCGGGSSSCEEEEEEEETTSCEEC-----------------C
T ss_pred             cCCCEEEEEEecCCCCCeEEeCCCcEEHHHHHHHhhhccCccccCCCCEEEEecCCCCcccCCcccccCcccccCccccc
Confidence            9999999999999999999999999999999999999999999999999999999999999887652   2455544456


Q ss_pred             cCCCCCCCEEEEEccCCCCccccCc----hhHHHHHHHHhHhH----HHHhhhcccCCC
Q psy15857        165 YSIPLHADFLMAYSTISDSPMFGQR----FGLKDKCSKVVSKT----YQVMSSNVDTSN  215 (455)
Q Consensus       165 ~~iP~~aD~Li~yST~pG~vS~R~~----~fIq~Lc~~~~~~~----~~~m~~~~~~~~  215 (455)
                      ..+|.++|||++|||+|||+|||++    ||||+||+.|.+..    +..|..+|++.+
T Consensus       164 ~~ip~~aD~Li~yST~pG~vs~r~~~~GS~fiq~L~~~l~~~~~~~dl~~ilt~V~~~V  222 (259)
T 3sir_A          164 YKIPVHADFLIAYSTVPGFYSWRNTTRGSWFMQSLCAELAANGKRLDILTLLTFVCQRV  222 (259)
T ss_dssp             EECCCCTTEEEEEEEECCSCCCSSCCCSCHHHHHHHHHHHHHTTTSCHHHHHHHHHHHH
T ss_pred             ccCCCCCCEEEEEECCCCeEeecCCCCCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence            7899999999999999999999986    99999999888753    334555555444

>3od5_A Caspase-6; caspase domain, apoptotic protease, hydrolase-hydrolase INHI complex; 1.60A {Homo sapiens} SCOP: c.17.1.0 PDB: 3k7e_A 3s70_A 3v6m_A 3v6l_A 3nr2_A 4fxo_A 2wdp_A 3nkf_A 3s8e_A 4ejf_A 3qnw_A* 3p4u_A* 3p45_B 3qnw_B* 3p4u_B*

Probab=100.00  E-value=9e-54  Score=423.49  Aligned_cols=209  Identities=35%  Similarity=0.553  Sum_probs=180.3

Q ss_pred             cccccCCCCceeCCCCceeEEEEEeCCCCCCC-CCCCCCChHHhHHHHHHHHHhCCcEEEEecCCCHHHHHHHHHHHHhh
Q psy15857          7 KSTVEKDADYYRMDHKHRGLALIFNHEHFDSP-HLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVIQNAIDEAAEQ   85 (455)
Q Consensus         7 ~~~~~~~~~~Y~m~~~~~G~aLIInN~~F~~~-~l~~R~Gs~~D~~~L~~~F~~LGF~V~~~~nlt~~em~~~l~~~s~~   85 (455)
                      +++.+..++.|+|+++++|+||||||.+|... .+++|.||++|+++|+++|++|||+|++++|||++||.+.|++|+++
T Consensus         4 ~~~~~~~~~~Y~m~~~~rg~aLIInn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~~~~~   83 (278)
T 3od5_A            4 KREMFDPAEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFNDLKAEELLLKIHEVSTV   83 (278)
T ss_dssp             ----CCTTCBCCCCSSBCCEEEEEECCCCCGGGCCCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHHS
T ss_pred             ccCCCCcccccCCCCCCcCEEEEEeccccCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhh
Confidence            46778899999999999999999999999853 68999999999999999999999999999999999999999999998


Q ss_pred             cCCCCceEEEEEecCCCCceeeeeCCccChhhhHHhhccccccccCCCceEEEEecccCCccCCCceeeec---------
Q psy15857         86 DYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAGKPKLFFIQACQGDKLDAGVTIRTQ---------  156 (455)
Q Consensus        86 d~~~~d~~vvvilSHG~~g~I~g~D~~v~~~~I~~~F~~~~c~~L~gKPKlFfiQACRG~~~d~gv~~~~~---------  156 (455)
                      +|..+|||||||||||.+|.|||+|+.|++++|+++|++.+||+|+|||||||||||||++.+.|+...+.         
T Consensus        84 ~h~~~d~~vv~ilSHG~~g~i~g~D~~v~l~~I~~~f~~~~CpsL~gKPKlffiQACRG~~~~~g~~~~~~~~~~~~~l~  163 (278)
T 3od5_A           84 SHADADCFVCVFLSHGEGNHIYAYDAKIEIQTLTGLFKGDKCHSLVGKPKIFIIQACRGNQHDVPVIPLDVVDNQTEKLD  163 (278)
T ss_dssp             CCTTBSCEEEEEESCEETTEEECSSSEEEHHHHHHTTSTTTCGGGTTSCEEEEEESCCSSBCBCEECCC-----------
T ss_pred             cccCCCEEEEEEECCCCCCEEEEeCCeEEHHHHHHHhccccChhhcCCCcEEEEecCCCCcccCCeeccccccccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999988763211         


Q ss_pred             ---cCCCCCCCcCCCCCCCEEEEEccCCCCccccCc----hhHHHHHHHHhHhH----HHHhhhcccCCC
Q psy15857        157 ---VDGHPSNTYSIPLHADFLMAYSTISDSPMFGQR----FGLKDKCSKVVSKT----YQVMSSNVDTSN  215 (455)
Q Consensus       157 ---~d~~~~~~~~iP~~aD~Li~yST~pG~vS~R~~----~fIq~Lc~~~~~~~----~~~m~~~~~~~~  215 (455)
                         +++.......+|.++|||++|||+|||+|||++    ||||+||+.|.+..    +.-|+.+|++.+
T Consensus       164 ~~~~~~~~~~~~~iP~~aD~Li~yST~pG~vs~R~~~~GS~fIq~L~~~l~~~~~~~dl~~ilt~Vn~~V  233 (278)
T 3od5_A          164 TNITEVDAASVYTLPAGADFLMCYSVAEGYYSHRETVNGSWYIQDLCEMLGKYGSSLEFTELLTLVNRKV  233 (278)
T ss_dssp             ----------CCCEETTTTEEEEESSCTTBCCEEETTTEEHHHHHHHHHHHHHTTTSCHHHHHHHHHHHH
T ss_pred             ccccccccccccccCCCCCeEEEEeCCCCeEEecCCCCCcHHHHHHHHHHHhhCCCCCHHHHHHHHHHHH
Confidence               112223456899999999999999999999985    99999999888752    444555555444

>1m72_A Caspase-1; caspase, cysteine protease, hydrolase-hydrolase inhibitor CO; 2.30A {Spodoptera frugiperda} SCOP: c.17.1.1 PDB: 3sip_B

Probab=100.00  E-value=2.5e-53  Score=419.08  Aligned_cols=211  Identities=50%  Similarity=0.835  Sum_probs=185.9

Q ss_pred             CccccccCCCCceeCCCCceeEEEEEeCCCCCCCCCCCCCChHHhHHHHHHHHHhCCcEEEEecCCCHHHHHHHHHHHHh
Q psy15857          5 VAKSTVEKDADYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVIQNAIDEAAE   84 (455)
Q Consensus         5 ~~~~~~~~~~~~Y~m~~~~~G~aLIInN~~F~~~~l~~R~Gs~~D~~~L~~~F~~LGF~V~~~~nlt~~em~~~l~~~s~   84 (455)
                      .++++.++..+.|+|+++++|+||||||.+|....+..|.|+++|+++|+++|++|||+|+++.|+|.+||.+.|++|++
T Consensus        13 ~~~~~~~~~~~~Y~m~~~~rg~aLIInn~~f~~~~l~~R~g~~~Da~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~~~~   92 (272)
T 1m72_A           13 VARMPVDRNAPYYNMNHKHRGMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGFKVTVFPNLKSEEINKFIQQTAE   92 (272)
T ss_dssp             EEECCSCTTCSBCCCCSSEEEEEEEEECCCCSSTTCCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHT
T ss_pred             eeeccCCcccccccCCCCCCCEEEEEechhcCCCCcccCCCCHHHHHHHHHHHHHCCCEEEEecCcCHHHHHHHHHHHHH
Confidence            47789999999999999999999999999998656899999999999999999999999999999999999999999999


Q ss_pred             hcCCCCceEEEEEecCCCCceeeeeCCccChhhhHHhhccccccccCCCceEEEEecccCCccCCCceee-eccCCCCCC
Q psy15857         85 QDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAGKPKLFFIQACQGDKLDAGVTIR-TQVDGHPSN  163 (455)
Q Consensus        85 ~d~~~~d~~vvvilSHG~~g~I~g~D~~v~~~~I~~~F~~~~c~~L~gKPKlFfiQACRG~~~d~gv~~~-~~~d~~~~~  163 (455)
                      ++|..+||++|||||||.+|.|||+|+.|++++|+++|++.+||+|+|||||||||||||++.+.|+.+. .++|+....
T Consensus        93 ~dh~~~d~~v~~~lsHG~~~~i~~~D~~v~l~~i~~~f~~~~cpsL~gKPKlffiqACRg~~~~~g~~~~~~~~d~~~~~  172 (272)
T 1m72_A           93 MDHSDADCLLVAVLTHGELGMLYAKDTHYKPDNLWYYFTADKCPTLAGKPKLFFIQACQGDRLDGGITLSRTETDGSPST  172 (272)
T ss_dssp             SCCTTEEEEEEEEESCEETTEEECSSSEECTTHHHHTTSTTTCGGGTTSCEEEEEESCSSSBCBCCEEEEC---------
T ss_pred             hhcCCCCEEEEEEcCCCCCCEEEecCCcEEHHHHHHHhccccChhhcCCceEEEEeCCCCCcccCCcccccccccccccc
Confidence            8899999999999999999999999999999999999999999999999999999999999999987542 355654334


Q ss_pred             CcCCCCCCCEEEEEccCCCCccccCc----hhHHHHHHHHhHhH----HHHhhhcccCCC
Q psy15857        164 TYSIPLHADFLMAYSTISDSPMFGQR----FGLKDKCSKVVSKT----YQVMSSNVDTSN  215 (455)
Q Consensus       164 ~~~iP~~aD~Li~yST~pG~vS~R~~----~fIq~Lc~~~~~~~----~~~m~~~~~~~~  215 (455)
                      ...+|.++|||++|||+|||+|||++    ||||+||+.|.+..    +..|+.+|++.+
T Consensus       173 ~~~iP~~aD~Li~ysT~pG~vs~r~~~~GS~fiq~L~~~l~~~~~~~dl~~ilt~V~~~V  232 (272)
T 1m72_A          173 SYRIPVHADFLIAFSTVPGYFSWRNTTRGSWFMQALCEELRYAGTERDILTLLTFVCQKV  232 (272)
T ss_dssp             CEEECTTCSEEEEESSCTTBCCEEETTTEEHHHHHHHHHHHHHTTTSCHHHHHHHHHHHH
T ss_pred             ccccCCCCCEEEEEeCCCCcEeecCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHH
Confidence            56899999999999999999999975    99999999988842    444555555554

>3h11_B Caspase-8; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} SCOP: c.17.1.1 PDB: 2k7z_A 1i4e_B 2fun_B 2c2z_B*

Probab=100.00  E-value=4e-53  Score=417.43  Aligned_cols=216  Identities=30%  Similarity=0.495  Sum_probs=178.5

Q ss_pred             CCCCceeCCCCceeEEEEEeCCCCCC--------CCCCCCCChHHhHHHHHHHHHhCCcEEEEecCCCHHHHHHHHHHHH
Q psy15857         12 KDADYYRMDHKHRGLALIFNHEHFDS--------PHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVIQNAIDEAA   83 (455)
Q Consensus        12 ~~~~~Y~m~~~~~G~aLIInN~~F~~--------~~l~~R~Gs~~D~~~L~~~F~~LGF~V~~~~nlt~~em~~~l~~~s   83 (455)
                      ...+.|+|+++|+|+||||||.+|..        ..+++|.||++|+++|+++|++|||+|+++.|||++||.++|++|+
T Consensus         5 ~~~~~Y~m~~~~rG~aLIInn~~F~~~~~~~~~~~~l~~R~Gt~~D~~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~~~   84 (271)
T 3h11_B            5 TLDKVYQMKSKPRGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFEELHFEIKPHDDCTVEQIYEILKIYQ   84 (271)
T ss_dssp             --CCBCCCCSSSCCEEEEEECCCCSHHHHTCGGGTTCCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHH
T ss_pred             cccccCCCCCCCCCEEEEEEchhcCcccccccccccCCCCCCcHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHH
Confidence            35688999999999999999999985        1489999999999999999999999999999999999999999999


Q ss_pred             hhcCCCCceEEEEEecCCCCceeeeeCCc-cChhhhHHhhccccccccCCCceEEEEecccCCccCCCceeeec------
Q psy15857         84 EQDYTDADCFVMAVLTHGEDGILHAKDVP-YKPKNLWSKFTADNCLTLAGKPKLFFIQACQGDKLDAGVTIRTQ------  156 (455)
Q Consensus        84 ~~d~~~~d~~vvvilSHG~~g~I~g~D~~-v~~~~I~~~F~~~~c~~L~gKPKlFfiQACRG~~~d~gv~~~~~------  156 (455)
                      +++|..+|||+|||||||.+|.|||+|+. +++++|+++|++.+||+|+|||||||||||||++.+.|+.+...      
T Consensus        85 ~~~h~~~d~~v~~ilSHG~~g~i~g~D~~~v~l~~I~~~f~~~~CpsL~gKPKlffiQACRG~~~~~gv~~~~~~~~~~~  164 (271)
T 3h11_B           85 LMDHSNMDCFICCILSHGDKGIIYGTDGQEAPIYELTSQFTGLKCPSLAGKPKVFFIQACQGDNYQKGIPVETASEEQPY  164 (271)
T ss_dssp             HSCCTTCSCEEEEEESCEETTEEECTTSCEEEHHHHHGGGSTTTCGGGTTSCEEEEEESCCSSBCC--------------
T ss_pred             HhcCCCCCEEEEEEEcCCcCCEEEecCCCeecHHHHHHHhhhccChhhcCCccEEEEeccCCCcccCCceeccCCccccc
Confidence            98999999999999999999999999996 99999999999999999999999999999999999988765211      


Q ss_pred             --cCCCCCCCcCCCCCCCEEEEEccCCCCccccCc----hhHHHHHHHHhHhH-----HHHhhhcccCCCCccc----cc
Q psy15857        157 --VDGHPSNTYSIPLHADFLMAYSTISDSPMFGQR----FGLKDKCSKVVSKT-----YQVMSSNVDTSNGECQ----TD  221 (455)
Q Consensus       157 --~d~~~~~~~~iP~~aD~Li~yST~pG~vS~R~~----~fIq~Lc~~~~~~~-----~~~m~~~~~~~~~e~~----~~  221 (455)
                        .|........+|.++|||++|||+|||+|||++    ||||+||+.|.+..     ...|+.+|++.+.+..    ..
T Consensus       165 ~e~d~~~~~~~~iP~~aD~Li~yST~pG~vs~R~~~~GS~fIq~L~~~l~~~~~~~~dl~~ilt~Vn~~V~~~~~~~~~~  244 (271)
T 3h11_B          165 LEMALSSPQTRYIPDEADFLLGMATVNNCVSYRNPAEGTWYIQSLCQSLRERCPRGDDILTILTEVNYEVSNKDDKKNMG  244 (271)
T ss_dssp             --------CCCCSCSSSSEEEEESSCTTBCCEEETTTEEHHHHHHHHHHHHHGGGTCCHHHHHHHHHHHHHTC------C
T ss_pred             cccccccccccccCCCCceEEEEECCCCceeecCCCCCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcccCCCCC
Confidence              111112345799999999999999999999986    99999999887742     4445666666665433    23


Q ss_pred             cccccc
Q psy15857        222 GHESHT  227 (455)
Q Consensus       222 ~~~~~~  227 (455)
                      .|.||.
T Consensus       245 kQ~P~~  250 (271)
T 3h11_B          245 KQMPQP  250 (271)
T ss_dssp             CCCCEE
T ss_pred             EEeeEE
Confidence            455554

>2nn3_C Caspase-1; cysteine protease, hydrolase; 3.00A {Spodoptera frugiperda}

Probab=100.00  E-value=6.8e-53  Score=422.22  Aligned_cols=211  Identities=50%  Similarity=0.825  Sum_probs=180.7

Q ss_pred             CccccccCCCCceeCCCCceeEEEEEeCCCCCCCCCCCCCChHHhHHHHHHHHHhCCcEEEEecCCCHHHHHHHHHHHHh
Q psy15857          5 VAKSTVEKDADYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVIQNAIDEAAE   84 (455)
Q Consensus         5 ~~~~~~~~~~~~Y~m~~~~~G~aLIInN~~F~~~~l~~R~Gs~~D~~~L~~~F~~LGF~V~~~~nlt~~em~~~l~~~s~   84 (455)
                      .++++.++..+.|+|+++++|+||||||.+|....+..|.|+++|+++|+++|++|||+|+++.|+|++||.+.|++|++
T Consensus        41 ~~~~~~~~~~~~Y~m~~~~rg~aLIInN~~F~~~~l~~R~Gt~~Da~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~f~~  120 (310)
T 2nn3_C           41 VARMPVDRNAPYYNMNHKHRGMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGFKVTVFPNLKSEEINKFIQQTAE  120 (310)
T ss_dssp             -----CCSSCSBCCCCSSBCCEEEEEECCCCSSTTCCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHS
T ss_pred             eeecccCCccccccCCCCCcCEEEEEechhcCCCCcccCCCCHHHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHH
Confidence            46788999999999999999999999999998656899999999999999999999999999999999999999999999


Q ss_pred             hcCCCCceEEEEEecCCCCceeeeeCCccChhhhHHhhccccccccCCCceEEEEecccCCccCCCceee-eccCCCCCC
Q psy15857         85 QDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAGKPKLFFIQACQGDKLDAGVTIR-TQVDGHPSN  163 (455)
Q Consensus        85 ~d~~~~d~~vvvilSHG~~g~I~g~D~~v~~~~I~~~F~~~~c~~L~gKPKlFfiQACRG~~~d~gv~~~-~~~d~~~~~  163 (455)
                      ++|..+|||||||||||.+|.||++|+.|++++|+++|++.+||+|+|||||||||||||++.+.|+.+. .++|+....
T Consensus       121 ~dh~~~D~~vv~ilSHG~~g~i~g~D~~v~l~~I~~~f~~~~CpsL~gKPKlffiQACRG~~~d~g~~~~~~~~d~~~~~  200 (310)
T 2nn3_C          121 MDHSDADCLLVAVLTAGELGMLYAKDTHYKPDNLWYYFTADKCPTLAGKPKLFFIQACQGDRLDGGITLSRTETDGSPST  200 (310)
T ss_dssp             SCGGGBSCEEEEEEEEEETTEEECSSCEECTHHHHGGGSTTTCGGGTTSCEEEEEEEECCCCCCCCC-------------
T ss_pred             hccCCCCEEEEEEeCCCCCCEEEecCCcEEHHHHHHHhccccChhhcCCceEEEEecccCCccccCcccccccccccccc
Confidence            8899999999999999999999999999999999999999999999999999999999999999987532 345654334


Q ss_pred             CcCCCCCCCEEEEEccCCCCccccCc----hhHHHHHHHHhHhH----HHHhhhcccCCC
Q psy15857        164 TYSIPLHADFLMAYSTISDSPMFGQR----FGLKDKCSKVVSKT----YQVMSSNVDTSN  215 (455)
Q Consensus       164 ~~~iP~~aD~Li~yST~pG~vS~R~~----~fIq~Lc~~~~~~~----~~~m~~~~~~~~  215 (455)
                      ...+|.++||||+|||+|||+|||++    ||||+||+.|.+..    +..|+.+|++.+
T Consensus       201 ~~~iP~~aD~LiayST~pG~vS~R~~~~GSwFIqaL~~~l~~~~~~~dl~~ilt~Vn~~V  260 (310)
T 2nn3_C          201 SYRIPVHADFLIAFSTVPGYFSWRNTTRGSWFMQALCEELRYAGTERDILTLLTFVCQKV  260 (310)
T ss_dssp             CCCCCCSTTEEEEECCCCCEEESSSSEEEEHHHHHHHHHHHTTTTTSCHHHHHHHHHHHH
T ss_pred             ccccCCCCCEEEEEeCCCCceeecCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHH
Confidence            56899999999999999999999986    99999999988742    444555555444

>1nw9_B Caspase 9, apoptosis-related cysteine protease; XIAP, caspase inhibition, caspase activation, dimerization; 2.40A {Homo sapiens} SCOP: c.17.1.1 PDB: 1jxq_A* 2ar9_A

Probab=100.00  E-value=4.2e-52  Score=411.56  Aligned_cols=220  Identities=25%  Similarity=0.344  Sum_probs=176.9

Q ss_pred             cCCCCceeCCCCceeEEEEEeCCCCCC-CCCCCCCChHHhHHHHHHHHHhCCcEEEEecCCCHHHHHHHHHHHHhhcCCC
Q psy15857         11 EKDADYYRMDHKHRGLALIFNHEHFDS-PHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVIQNAIDEAAEQDYTD   89 (455)
Q Consensus        11 ~~~~~~Y~m~~~~~G~aLIInN~~F~~-~~l~~R~Gs~~D~~~L~~~F~~LGF~V~~~~nlt~~em~~~l~~~s~~d~~~   89 (455)
                      .+....|+|+++|+|+||||||.+|.. ..+.+|.||++|+++|+++|++|||+|+++.|+|++||.+.|++|++++|..
T Consensus         8 ~~~~~~Y~m~~~~rg~aLIInn~~f~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~V~~~~dlt~~em~~~l~~~~~~~h~~   87 (277)
T 1nw9_B            8 GNADLAYILSMEPCGHCLIINNVNFCRESGLRTRTGSNIDCEKLRRRFSSLHFMVEVKGDLTAKKMVLALLELARQDHGA   87 (277)
T ss_dssp             HCTTTBCCCCCSSCEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTEEEEEEESCCHHHHHHHHHHHHHSCCTT
T ss_pred             CCCcceeeCCCCcccEEEEEeCcccCCCCCCCCCCCcHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHHhhccc
Confidence            345578999999999999999999985 3589999999999999999999999999999999999999999999999999


Q ss_pred             CceEEEEEecCCCC-------ceeeeeCCc-cChhhhHHhhccccccccCCCceEEEEecccCCccCCCceeeec-----
Q psy15857         90 ADCFVMAVLTHGED-------GILHAKDVP-YKPKNLWSKFTADNCLTLAGKPKLFFIQACQGDKLDAGVTIRTQ-----  156 (455)
Q Consensus        90 ~d~~vvvilSHG~~-------g~I~g~D~~-v~~~~I~~~F~~~~c~~L~gKPKlFfiQACRG~~~d~gv~~~~~-----  156 (455)
                      +||+||||||||.+       |.||++|+. |++++|+++|++.+||+|+|||||||||||||++.+.|+.+...     
T Consensus        88 ~D~~vv~ilSHG~~~~~~~~~g~iy~~D~~~v~l~~i~~~f~~~~CpsL~gKPKlffiQACRG~~~d~g~~~~~~~~~~~  167 (277)
T 1nw9_B           88 LDCCVVVILSHGCQASHLQFPGAVYGTDGCPVSVEKIVNIFNGTSCPSLGGKPKLFFIQACGGEQKDHGFEVASTSPEDE  167 (277)
T ss_dssp             CSEEEEEEEEEEECCCCSSSCCEEECTTSCEEEHHHHHHTTCTTTCGGGTTSCEEEEEEEEC------------------
T ss_pred             CCeEEEEEeCCCCccccccCCCcEEecCCceeeHHHHHHHhcccCChhHcCCCcEEEEeccCCCcccCCceeccCCcccc
Confidence            99999999999998       999999995 99999999999999999999999999999999999988764210     


Q ss_pred             -------cCCC-----------CCCCcCCCCCCCEEEEEccCCCCccccCc----hhHHHHHHHHhHh----HHHHhhhc
Q psy15857        157 -------VDGH-----------PSNTYSIPLHADFLMAYSTISDSPMFGQR----FGLKDKCSKVVSK----TYQVMSSN  210 (455)
Q Consensus       157 -------~d~~-----------~~~~~~iP~~aD~Li~yST~pG~vS~R~~----~fIq~Lc~~~~~~----~~~~m~~~  210 (455)
                             +++.           ......+|.++|||++|||+|||+|||++    ||||+||+.|.+.    .+..|+.+
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~aD~Li~ysT~pG~vs~R~~~~GS~fiq~L~~~l~~~~~~~dl~~ilt~  247 (277)
T 1nw9_B          168 SPGSNPEPDATPFQEGLRTFDQLDAISSLPTPSDIFVSYSTFPGFVSWRDPKSGSWYVETLDDIFEQWAHSEDLQSLLLR  247 (277)
T ss_dssp             ---------CBCCC------------CCCCCSCSEEEEEECCCCBSSTTCTTSCBHHHHHHHHHHHHHTTTSCHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccCCCCCEEEEEcCCCCeEEEcCCCCCcHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence                   1110           01246799999999999999999999976    9999999988873    24445666


Q ss_pred             ccCCCCccccccccccccCC
Q psy15857        211 VDTSNGECQTDGHESHTNGS  230 (455)
Q Consensus       211 ~~~~~~e~~~~~~~~~~~~s  230 (455)
                      |++.+..-....|.||..++
T Consensus       248 V~~~V~~~~~~kQ~P~~~st  267 (277)
T 1nw9_B          248 VANAVSVKGIYKQMPGCFNF  267 (277)
T ss_dssp             HHHHHHTTCCSCCCCCCEEC
T ss_pred             HHHHHhhccCccCcccceee
Confidence            66666544444566664443

>4ehd_A Caspase-3; caspase, apoptosis, allosteric inhibition; 1.58A {Homo sapiens} PDB: 4ehk_A 4ehf_A 4ehn_A 1cp3_A 4ehh_A 4eha_A 4ehl_A 1i3o_A

Probab=100.00  E-value=5.1e-52  Score=410.43  Aligned_cols=203  Identities=31%  Similarity=0.531  Sum_probs=176.6

Q ss_pred             CCCCceeCCCCceeEEEEEeCCCCCC-CCCCCCCChHHhHHHHHHHHHhCCcEEEEecCCCHHHHHHHHHHHHhhcCCCC
Q psy15857         12 KDADYYRMDHKHRGLALIFNHEHFDS-PHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVIQNAIDEAAEQDYTDA   90 (455)
Q Consensus        12 ~~~~~Y~m~~~~~G~aLIInN~~F~~-~~l~~R~Gs~~D~~~L~~~F~~LGF~V~~~~nlt~~em~~~l~~~s~~d~~~~   90 (455)
                      ...+.|+|+++++|+||||||.+|.. ..+++|.|+++|+++|+++|++|||+|+++.|||++||.+.|++|++++|..+
T Consensus        32 ~~~~~Y~m~~~~rg~aLIInN~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~f~~~dh~~~  111 (277)
T 4ehd_A           32 SLDNSYKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEIVELMRDVSKEDHSKR  111 (277)
T ss_dssp             CCCCBCCCCSSEEEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHTSCCTTE
T ss_pred             CccccccCCCCCCCEEEEEEchhcCCcCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhhcccCC
Confidence            45678999999999999999999985 36899999999999999999999999999999999999999999999899999


Q ss_pred             ceEEEEEecCCCCceeeeeCCccChhhhHHhhccccccccCCCceEEEEecccCCccCCCceeeeccCCCCCCCcCCCCC
Q psy15857         91 DCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAGKPKLFFIQACQGDKLDAGVTIRTQVDGHPSNTYSIPLH  170 (455)
Q Consensus        91 d~~vvvilSHG~~g~I~g~D~~v~~~~I~~~F~~~~c~~L~gKPKlFfiQACRG~~~d~gv~~~~~~d~~~~~~~~iP~~  170 (455)
                      |||||||||||.+|.|||+|+.|++++|+++|++.+||+|+|||||||||||||++.+.|+......+ .......+|.+
T Consensus       112 d~~vv~ilSHG~~g~i~g~D~~v~l~~I~~~f~~~~CpsL~gKPKlffiQACRG~~~~~g~~~~~~~~-~~~~~~~ip~~  190 (277)
T 4ehd_A          112 SSFVCVLLSHGEEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPKLFIIQACRGTELDCGIETDSGVD-DDMACHKIPVE  190 (277)
T ss_dssp             EEEEEEEESCEETTEEEETTEEEEHHHHHHTTSTTTCGGGTTSCEEEEEESCCSSBCBCCCCC-----------CCCCTT
T ss_pred             CEEEEEEEcCCCCCEEEEeCCcEeHHHHHHHhhhccCchhcCCccEEEEecCCCCcccCCccccCCcc-ccccccccCCC
Confidence            99999999999999999999999999999999999999999999999999999999999875421111 11245789999


Q ss_pred             CCEEEEEccCCCCccccCc----hhHHHHHHHHhHhH----HHHhhhcccCCC
Q psy15857        171 ADFLMAYSTISDSPMFGQR----FGLKDKCSKVVSKT----YQVMSSNVDTSN  215 (455)
Q Consensus       171 aD~Li~yST~pG~vS~R~~----~fIq~Lc~~~~~~~----~~~m~~~~~~~~  215 (455)
                      +|||++|||+|||+|||++    ||||+||+.|.+..    +.-|+.+|++.+
T Consensus       191 aD~Li~yST~pG~vs~r~~~~GS~fIq~L~~~l~~~~~~~dl~~ilt~V~~~V  243 (277)
T 4ehd_A          191 ADFLYACSTAPGYYSWRNSKDGSWFIQSLCAMLKQYADKLEFMHILTRVNRKV  243 (277)
T ss_dssp             TTEEEEESSCTTBCCEEETTTEEHHHHHHHHHHHHHTTTSCHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCeEeecCCCCCcHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence            9999999999999999975    99999999888742    333454454444

>2j32_A Caspase-3; Pro-caspase3, thiol protease, hydrolase, hydrolase-hydrolase inhibitor complex; 1.30A {Homo sapiens} PDB: 2j30_A 3h0e_A* 2j33_A 3pd1_A 2j31_A 3pcx_A 1nms_A* 1nmq_A* 3deh_A* 3dei_A* 3dej_A* 3dek_A* 3pd0_A 3itn_A 1qx3_A

Probab=100.00  E-value=1.3e-51  Score=402.41  Aligned_cols=201  Identities=32%  Similarity=0.556  Sum_probs=175.2

Q ss_pred             CCceeCCCCceeEEEEEeCCCCCCC-CCCCCCChHHhHHHHHHHHHhCCcEEEEecCCCHHHHHHHHHHHHhhcCCCCce
Q psy15857         14 ADYYRMDHKHRGLALIFNHEHFDSP-HLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVIQNAIDEAAEQDYTDADC   92 (455)
Q Consensus        14 ~~~Y~m~~~~~G~aLIInN~~F~~~-~l~~R~Gs~~D~~~L~~~F~~LGF~V~~~~nlt~~em~~~l~~~s~~d~~~~d~   92 (455)
                      ++.|+|+++++|+||||||.+|... .+.+|.|+++|+++|+++|++|||+|+++.|+|.+||.+.|++|++++|..+||
T Consensus         6 ~~~Y~m~~~~rg~aLIInn~~f~~~~~l~~r~g~~~D~~~l~~~f~~LgF~V~~~~dlt~~em~~~l~~~~~~~~~~~d~   85 (250)
T 2j32_A            6 DNSYKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEIVELMRDVSKEDHSKRSS   85 (250)
T ss_dssp             CCBCCCCSSEEEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHTSCCTTEEE
T ss_pred             cccccCCCCCccEEEEEechhcCCCCCCcCCCCCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHhhccCCCE
Confidence            4689999999999999999999852 589999999999999999999999999999999999999999999989999999


Q ss_pred             EEEEEecCCCCceeeeeCCccChhhhHHhhccccccccCCCceEEEEecccCCccCCCceeeeccCCCCCCCcCCCCCCC
Q psy15857         93 FVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAGKPKLFFIQACQGDKLDAGVTIRTQVDGHPSNTYSIPLHAD  172 (455)
Q Consensus        93 ~vvvilSHG~~g~I~g~D~~v~~~~I~~~F~~~~c~~L~gKPKlFfiQACRG~~~d~gv~~~~~~d~~~~~~~~iP~~aD  172 (455)
                      ++|||||||.+|.||++|+.|++++|+++|++.+||+|+|||||||||||||++.+.|+......+. ......+|.++|
T Consensus        86 ~v~~~lsHG~~g~i~~~D~~v~l~~i~~~f~~~~cp~L~gKPKlf~iqACRg~~~~~g~~~~~~~~~-~~~~~~ip~~aD  164 (250)
T 2j32_A           86 FVCVLLSHGEEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPKLFIIQACRGTELDCGIATDSGVDD-DMACHKIPVEAD  164 (250)
T ss_dssp             EEEEEESCEETTEEEETTEEEEHHHHHHTTSTTTCGGGTTSCEEEEEESCSEEECBCCCCC-----------CCCCTTTT
T ss_pred             EEEEECCCCCCCeEEecCCcEEHHHHHHHhccccChhHcCCCeEEEEecccCCcccCCccccCCccc-cccccccCCCCC
Confidence            9999999999999999999999999999999999999999999999999999999988753211110 113567999999


Q ss_pred             EEEEEccCCCCccccCc----hhHHHHHHHHhHh----HHHHhhhcccCCC
Q psy15857        173 FLMAYSTISDSPMFGQR----FGLKDKCSKVVSK----TYQVMSSNVDTSN  215 (455)
Q Consensus       173 ~Li~yST~pG~vS~R~~----~fIq~Lc~~~~~~----~~~~m~~~~~~~~  215 (455)
                      ||++|||+|||+|||++    ||||+||+.|.+.    .+..|..+|++.+
T Consensus       165 ~Li~ysT~pG~vs~r~~~~gS~fiq~L~~~l~~~~~~~dl~~ilt~V~~~V  215 (250)
T 2j32_A          165 FLYAYSTAPGYYSWRNSKDGSWFIQSLCAMLKQYADKLEFMHILTRVNRKV  215 (250)
T ss_dssp             EEEEESSCTEECCEEETTTEEHHHHHHHHHHHHHTTTSCHHHHHHHHHHHH
T ss_pred             EEEEEeCCCccEEecCCCCCcHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence            99999999999999966    8999999998873    2444555555544

>2fp3_A Caspase NC; apoptosis, initiator caspase activation, dimerization, active site conformation, hydrolysis/apoptosis complex; 2.50A {Drosophila melanogaster}

Probab=100.00  E-value=1.8e-50  Score=406.37  Aligned_cols=205  Identities=20%  Similarity=0.378  Sum_probs=167.8

Q ss_pred             ccCCCCceeCCCC-ceeEEEEEeCCCCCCCCCCCCCChHHhHHHHHHHHHhCCcEEEEecCCCHHHHHHHHHHHHhhcCC
Q psy15857         10 VEKDADYYRMDHK-HRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVIQNAIDEAAEQDYT   88 (455)
Q Consensus        10 ~~~~~~~Y~m~~~-~~G~aLIInN~~F~~~~l~~R~Gs~~D~~~L~~~F~~LGF~V~~~~nlt~~em~~~l~~~s~~d~~   88 (455)
                      .++..+.|+|+++ ++|+||||||.+|.... ..|.|+++|+++|+++|++|||+|+++.|+|++||.+.|++|++++|.
T Consensus        46 ~~~~~~~Y~m~~~~~rg~aLIInN~~F~~~~-~~R~Gt~~D~~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~f~~~~h~  124 (316)
T 2fp3_A           46 DSAILGTYKMQSRFNRGVLLMVNIMDYPDQN-RRRIGAEKDSKSLIHLFQELNFTIFPYGNVNQDQFFKLLTMVTSSSYV  124 (316)
T ss_dssp             SCCSSCBCCCCCSSCSEEEEEEECCCCSSTT-SCCTTHHHHHHHHHHHHHHTTEEEEEECSCCHHHHHHHHHHHHTSHHH
T ss_pred             cCCccccccCCCCCCCcEEEEEeCcccCCCC-CCCCCcHHHHHHHHHHHHHCCCEEEEccCCCHHHHHHHHHHHHHHhhc
Confidence            4557789999999 99999999999998544 899999999999999999999999999999999999999999998888


Q ss_pred             -CCceEEEEEecCCCC----ceeeeeCCc-cChhhhHHhhccccccccCCCceEEEEecccCCccCCCceeeecc-----
Q psy15857         89 -DADCFVMAVLTHGED----GILHAKDVP-YKPKNLWSKFTADNCLTLAGKPKLFFIQACQGDKLDAGVTIRTQV-----  157 (455)
Q Consensus        89 -~~d~~vvvilSHG~~----g~I~g~D~~-v~~~~I~~~F~~~~c~~L~gKPKlFfiQACRG~~~d~gv~~~~~~-----  157 (455)
                       .+||+||||||||.+    |.|||+|+. |++++|+++|++.+||+|+|||||||||||||++.+.|+......     
T Consensus       125 ~~~D~~vv~ilSHG~~~~g~g~i~g~D~~~v~l~~I~~~f~~~~CpsL~gKPKlffiQACRG~~~d~g~~~~~~~~~~~~  204 (316)
T 2fp3_A          125 QNTECFVMVLMTHGNSVEGKEKVEFRDGSVVDMQKIKDHFQTAKCPYLVNKPKVLMFPFARGDEYDLGHPKNQGNLMEPV  204 (316)
T ss_dssp             HTCSCEEEEEESCEECCTTCCEEECTTSCEEEHHHHHHTTSTTTCGGGTTSCEEEEESCC--------------------
T ss_pred             CCCCEEEEEEccCCCccCCCCEEEeecCcEEeHHHHHHHhccccChhhcCCceEEEEecCCCCcccCCceeccCcccccc
Confidence             999999999999998    999999998 999999999999999999999999999999999999887642110     


Q ss_pred             -------C----CC--CCCCcCCCCCCCEEEEEccCCCCccccCc----hhHHHHHHHHhHhH----HHHhhhcccCCC
Q psy15857        158 -------D----GH--PSNTYSIPLHADFLMAYSTISDSPMFGQR----FGLKDKCSKVVSKT----YQVMSSNVDTSN  215 (455)
Q Consensus       158 -------d----~~--~~~~~~iP~~aD~Li~yST~pG~vS~R~~----~fIq~Lc~~~~~~~----~~~m~~~~~~~~  215 (455)
                             +    ..  ......+|.++||||+|||+|||+|||++    ||||+||+.|.+..    +..|+.+|++.+
T Consensus       205 ~~~~~~~~~~~~~~d~~~~~~~iP~~aD~Li~yST~pG~vS~R~~~~GSwFIq~L~~~l~~~~~~~dl~~ilt~Vn~~V  283 (316)
T 2fp3_A          205 YTAQEEKWPDTQTEGIPSPSTNVPSLADTLVCYANTPGYVTHRDLDTGSWYIQKFCQVMADHAHDTDLEDILKKTSEAV  283 (316)
T ss_dssp             -------------------CCCCCCCCSEEEEECCCSCCCBTTTBCHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccCCCCCEEEEEeCCCCceeccCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence                   0    00  12456799999999999999999999987    99999999988732    344554444444

>1f1j_A Caspase-7 protease; caspase-7, cysteine protease, hydrolase, apoptosis, hydrolas hydrolase inhibitor complex; 2.35A {Homo sapiens} SCOP: c.17.1.1 PDB: 1kmc_A 3r5k_A 1i4o_A 1gqf_A 3h1p_A 1shj_A* 1k86_A 1k88_A 1shl_A*

Probab=100.00  E-value=3.7e-50  Score=401.93  Aligned_cols=204  Identities=33%  Similarity=0.550  Sum_probs=174.6

Q ss_pred             CCCCceeCCCCceeEEEEEeCCCCCC-CCCCCCCChHHhHHHHHHHHHhCCcEEEEecCCCHHHHHHHHHHHHhhcCCCC
Q psy15857         12 KDADYYRMDHKHRGLALIFNHEHFDS-PHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVIQNAIDEAAEQDYTDA   90 (455)
Q Consensus        12 ~~~~~Y~m~~~~~G~aLIInN~~F~~-~~l~~R~Gs~~D~~~L~~~F~~LGF~V~~~~nlt~~em~~~l~~~s~~d~~~~   90 (455)
                      .+.+.|+|+++++|+||||||.+|.. ..+.+|.|+++|+++|+++|++|||+|+++.|+|.+||.+.|++|++++|..+
T Consensus        57 ~~~~~Y~m~~~~rg~aLIInN~~f~~~~~L~~R~G~~~Da~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~~~~~~h~~~  136 (305)
T 1f1j_A           57 VPTYQYNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVIVYNDCSCAKMQDLLKKASEEDHTNA  136 (305)
T ss_dssp             ---CBCCCCSSEEEEEEEEECCCCCTTTTCCCCTTHHHHHHHHHHHHHHHTEEEEEEESCCHHHHHHHHHHHHHSCGGGE
T ss_pred             CcccccccCCCCCCEEEEEechhcCCCccCccCCCcHHHHHHHHHHHHHCCCEEEEecCcCHHHHHHHHHHHHHhhcCCC
Confidence            34689999999999999999999986 36899999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEEEecCCCCceeeeeCCccChhhhHHhhccccccccCCCceEEEEecccCCccCCCceeeecc--CCCCCCCcCCC
Q psy15857         91 DCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAGKPKLFFIQACQGDKLDAGVTIRTQV--DGHPSNTYSIP  168 (455)
Q Consensus        91 d~~vvvilSHG~~g~I~g~D~~v~~~~I~~~F~~~~c~~L~gKPKlFfiQACRG~~~d~gv~~~~~~--d~~~~~~~~iP  168 (455)
                      ||++|||||||.+|.|||+|+.|++++|+++|++.+||+|+|||||||||||||++.+.|+......  +........+|
T Consensus       137 d~~vv~ilsHG~~~~i~g~D~~v~l~~I~~~f~~~~CpsL~gKPKlffiQACRG~~~~~g~~~~~~~~~~~~~~~~~~ip  216 (305)
T 1f1j_A          137 ACFACILLSHGEENVIYGKDGVTPIKDLTAHFRGDRSKTLLEKPKLFFIQACRGTELDDGIQADSGPINDTDANPRYKIP  216 (305)
T ss_dssp             EEEEEEEESCEETTEEECSSSEEEHHHHHHTTSTTTCGGGTTSCEEEEEESCCSSBCBCCBC---------------CBC
T ss_pred             CEEEEEEecCCCCCeEEecCCeEEHHHHHHHhhhccChhhcCCceEEEeccccCCcccCCccccCCcccccccccccccC
Confidence            9999999999999999999999999999999999999999999999999999999999887541110  00011246899


Q ss_pred             CCCCEEEEEccCCCCccccCc----hhHHHHHHHHhHhH----HHHhhhcccCCC
Q psy15857        169 LHADFLMAYSTISDSPMFGQR----FGLKDKCSKVVSKT----YQVMSSNVDTSN  215 (455)
Q Consensus       169 ~~aD~Li~yST~pG~vS~R~~----~fIq~Lc~~~~~~~----~~~m~~~~~~~~  215 (455)
                      .++||||+|||+|||+|||++    ||||+||+.|.+..    +..|+.+|++.+
T Consensus       217 ~~aD~LiayST~pG~vs~r~~~~GS~FiqaL~~~l~~~~~~~dl~~ilt~Vn~~V  271 (305)
T 1f1j_A          217 VEADFLFAYSTVPGYYSWRSPGRGSWFVQALCSILEEHGKDLEIMQILTRVNDRV  271 (305)
T ss_dssp             TTTTEEEEESSCTTBCCEEETTTEEHHHHHHHHHHHHHTTTSCHHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCeeccCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHH
Confidence            999999999999999999976    99999999988753    344555555444

>3e4c_A Caspase-1; zymogen, inflammasome, ICE, IL-1B, innate immunity, apoptosis, hydrolase, protease protease; 2.05A {Homo sapiens}

Probab=100.00  E-value=1.7e-49  Score=396.79  Aligned_cols=220  Identities=20%  Similarity=0.275  Sum_probs=185.0

Q ss_pred             cccccCCCCceeCCCCc--eeEEEEEeCCCCCCCCCCCCCChHHhHHHHHHHHHhCCcEEEEecCCCHHHHHHHHHHHHh
Q psy15857          7 KSTVEKDADYYRMDHKH--RGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVIQNAIDEAAE   84 (455)
Q Consensus         7 ~~~~~~~~~~Y~m~~~~--~G~aLIInN~~F~~~~l~~R~Gs~~D~~~L~~~F~~LGF~V~~~~nlt~~em~~~l~~~s~   84 (455)
                      +++.++.+++|+|.+++  +|+||||||.+|.  .+..|.|+++|+++|+++|++|||+|+++.|+|++||.++|++|++
T Consensus        41 ~~~~~~~~e~Y~m~~~~~~~r~aLII~N~~f~--~l~~R~G~~~Da~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~f~~  118 (302)
T 3e4c_A           41 RIWKQKSAEIYPIMDKSSRTRLALIICNEEFD--SIPRRTGAEVDITGMTMLLQNLGYSVDVKKNLTASDMTTELEAFAH  118 (302)
T ss_dssp             HHHHHHGGGBCCCCCTTTCCCEEEEEECCSCS--SSCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHT
T ss_pred             HHHHhccccccccCCCCCCccEEEEEECcCCC--CCCCCCCcHHHHHHHHHHHHHCCCEEEEeeCCCHHHHHHHHHHHHh
Confidence            34556788999999875  7999999999997  6899999999999999999999999999999999999999999986


Q ss_pred             -hcCCCCceEEEEEecCCCCceeeeeCC------ccChhhhHHhhccccccccCCCceEEEEecccCCccCCCceeeec-
Q psy15857         85 -QDYTDADCFVMAVLTHGEDGILHAKDV------PYKPKNLWSKFTADNCLTLAGKPKLFFIQACQGDKLDAGVTIRTQ-  156 (455)
Q Consensus        85 -~d~~~~d~~vvvilSHG~~g~I~g~D~------~v~~~~I~~~F~~~~c~~L~gKPKlFfiQACRG~~~d~gv~~~~~-  156 (455)
                       .+|..+||++|||||||.++.|||+|+      .|++++|+++|++++||+|+|||||||||||||++.+.++..... 
T Consensus       119 ~~dh~~~d~~vv~~lsHG~~~~i~g~D~~~~~~~~v~l~~I~~~F~~~~CpsL~gKPKlffIQACRG~~~~~~~~~ds~~  198 (302)
T 3e4c_A          119 RPEHKTSDSTFLVFMSHGIREGICGKKHSEQVPDILQLNAIFNMLNTKNCPSLKDKPKVIIIQAARGDSPGVVWFKDSVG  198 (302)
T ss_dssp             CGGGGGCSCEEEEEEEEEETTEEECTTCCSSSCCEECHHHHHHHTSTTTCGGGTTSCEEEEEEEECSSSCCCCCCCCC--
T ss_pred             hhccCCCCEEEEEEeccCcCCeEEeecccccCCcEEEHHHHHHHHhhhcchhhcCCccEEEEECCCCCCCCcceeccCcc
Confidence             589999999999999999999999995      399999999999999999999999999999999998755421100 


Q ss_pred             cCC----------CCCCCcCCCCCCCEEEEEccCCCCccccCc----hhHHHHHHHHhHh----HHHHhhhcccCCCCcc
Q psy15857        157 VDG----------HPSNTYSIPLHADFLMAYSTISDSPMFGQR----FGLKDKCSKVVSK----TYQVMSSNVDTSNGEC  218 (455)
Q Consensus       157 ~d~----------~~~~~~~iP~~aD~Li~yST~pG~vS~R~~----~fIq~Lc~~~~~~----~~~~m~~~~~~~~~e~  218 (455)
                      ..+          .......+|.++|||++|||+|||+|||++    ||||+||+.|.+.    .+..|+.+|+..+..-
T Consensus       199 ~~~~~~~~~~~~~~~d~~~~ip~~aDfLi~yST~pG~vS~R~~~~GSwFIqaL~~~l~~~~~~~dl~~il~~V~~~v~~~  278 (302)
T 3e4c_A          199 VSGNLSLPTTEEFEDDAIKKAHIEKDFIAFCSSTPDNVSWRHPTMGSVFIGRLIEHMQEYACSCDVEEIFRKVRFSFEQP  278 (302)
T ss_dssp             ------CCCCCCCCCHHHHTSCSSCSEEEEEECCCCCCCSSSTTCCCHHHHHHHHHHHHHTTTSCHHHHHHHHHHHTSSC
T ss_pred             cccccccccccccccccccccCCCCCEEEEEeCCCCceeecCCCCCcHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCC
Confidence            000          001234689999999999999999999986    9999999998774    2555667777666554


Q ss_pred             cccccccccc
Q psy15857        219 QTDGHESHTN  228 (455)
Q Consensus       219 ~~~~~~~~~~  228 (455)
                      ....|.||..
T Consensus       279 ~~~kQ~P~~~  288 (302)
T 3e4c_A          279 DGRAQMPTTE  288 (302)
T ss_dssp             CSSCCCCEEE
T ss_pred             CCceeeeeee
Confidence            4556666654

>3h11_A CAsp8 and FADD-like apoptosis regulator; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} PDB: 3h13_A

Probab=100.00  E-value=5.8e-48  Score=380.37  Aligned_cols=195  Identities=23%  Similarity=0.319  Sum_probs=157.2

Q ss_pred             ccccccCCCCceeCCCCceeEEEEEeCCCCCCCCCCCCCChHHhHHHHHHHHHhCCcEEEEecCCCHHHHHHHHHHHHh-
Q psy15857          6 AKSTVEKDADYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVIQNAIDEAAE-   84 (455)
Q Consensus         6 ~~~~~~~~~~~Y~m~~~~~G~aLIInN~~F~~~~l~~R~Gs~~D~~~L~~~F~~LGF~V~~~~nlt~~em~~~l~~~s~-   84 (455)
                      ++++.+...+.|+|+++|+|+||||||..             .|+++|+++|++|||+|+++.|||++||.+.|++|++ 
T Consensus        25 ~~~~~~~~~~~Y~m~~~~rG~~LIinn~~-------------~D~~~L~~~f~~LgF~V~~~~dlt~~em~~~l~~~~~~   91 (272)
T 3h11_A           25 AFLPQSIPEERYKMKSKPLGICLIIDCIG-------------NETELLRDTFTSLGYEVQKFLHLSMHGISQILGQFACM   91 (272)
T ss_dssp             ----CCSSSCBCCCCCSSSEEEEEEESSC-------------CCCSHHHHHHHHHTEEEEEEESCBHHHHHHHHHHHHTC
T ss_pred             CCCCCCCccccCCCCCCcceEEEEECCch-------------HHHHHHHHHHHHCCCEEEEeeCCCHHHHHHHHHHHHhc
Confidence            56678889999999999999999999952             6999999999999999999999999999999999997 


Q ss_pred             hcCCCCceEEEEEecCCCCceeeeeCCc---cChhhhHHhhccccccccCCCceEEEEecccCCc--cCCCceeeeccCC
Q psy15857         85 QDYTDADCFVMAVLTHGEDGILHAKDVP---YKPKNLWSKFTADNCLTLAGKPKLFFIQACQGDK--LDAGVTIRTQVDG  159 (455)
Q Consensus        85 ~d~~~~d~~vvvilSHG~~g~I~g~D~~---v~~~~I~~~F~~~~c~~L~gKPKlFfiQACRG~~--~d~gv~~~~~~d~  159 (455)
                      ++|..+|||+|||||||.+|.|||+|+.   |++++|+++|++++||+|+|||||||||||||+.  .+.|+.+  ++|+
T Consensus        92 ~dh~~~d~~v~~ilSHG~~g~i~g~D~~~~~v~l~~i~~~f~~~~CpsL~gKPKlffiQACRG~~~~~~~g~~~--~~D~  169 (272)
T 3h11_A           92 PEHRDYDSFVCVLVSRGGSQSVYGVDQTHSGLPLHHIRRMFMGDSCPYLAGKPKMFFIQNYVVSEGQLENSSLL--EVDG  169 (272)
T ss_dssp             GGGGGCSEEEEEEEEEEETTEECBTSCCSSCEEHHHHHHHHSTTTCGGGTTSCEEEEEEEEEC-----------------
T ss_pred             cccCCCCEEEEEEEcCCCCCeEEEEcCCcceEeHHHHHHHhccccChhhcCCCcEEEEECCCCCCcccCCCcce--eccC
Confidence            5899999999999999999999999996   9999999999999999999999999999999974  3445322  2333


Q ss_pred             CC----------CCCcCCCCCCCEEEEEccCCCCccccCc----hhHHHHHHHHhHhH---HHHhhhcccCCC
Q psy15857        160 HP----------SNTYSIPLHADFLMAYSTISDSPMFGQR----FGLKDKCSKVVSKT---YQVMSSNVDTSN  215 (455)
Q Consensus       160 ~~----------~~~~~iP~~aD~Li~yST~pG~vS~R~~----~fIq~Lc~~~~~~~---~~~m~~~~~~~~  215 (455)
                      ..          .....+|.+||||++|||+|||+|||++    ||||+||+.|.+..   ..-|..+|++.+
T Consensus       170 ~~~~~~~~~~~~~~~~~iP~~aDfL~~yST~pg~~s~R~~~~GSwfIq~Lc~~l~~~~~~dl~~ilt~Vn~~V  242 (272)
T 3h11_A          170 PAMKNVEFKAQKRGLCTVHREADFFWSLCTADMSLLEQSHSSPSLYLQCLSQKLRQERKRPLLDLHIELNGYM  242 (272)
T ss_dssp             -----------------CCTTCSEEEEEEEEEGGGTSSTTCCCCHHHHHHHHHHHHCTTSCHHHHHHHHHHHH
T ss_pred             cccccccccccccccccCCCCCCEEEEEeccCCeEEEEeCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            21          2457899999999999999999999986    99999999887742   333455555555

>3p45_A Caspase-6; protease, huntington'S disease, physio PH, competitive inhibition, hydrolase; 2.53A {Homo sapiens}

Probab=100.00  E-value=1.6e-44  Score=333.95  Aligned_cols=148  Identities=41%  Similarity=0.640  Sum_probs=128.7

Q ss_pred             ccccccCCCCceeCCCCceeEEEEEeCCCCCCC-CCCCCCChHHhHHHHHHHHHhCCcEEEEecCCCHHHHHHHHHHHHh
Q psy15857          6 AKSTVEKDADYYRMDHKHRGLALIFNHEHFDSP-HLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVIQNAIDEAAE   84 (455)
Q Consensus         6 ~~~~~~~~~~~Y~m~~~~~G~aLIInN~~F~~~-~l~~R~Gs~~D~~~L~~~F~~LGF~V~~~~nlt~~em~~~l~~~s~   84 (455)
                      ++++.+..++.|+|+++|+|+||||||.+|.+. .+++|.||++|+++|+++|++|||+|++++|||++||.+.|+++++
T Consensus        26 ~~~~~~~~~~~Y~m~~~~rG~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~F~~LGF~V~~~~dlt~~em~~~l~~~~~  105 (179)
T 3p45_A           26 YKREMFDPAEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFNDLKAEELLLKIHEVST  105 (179)
T ss_dssp             -----CCTTCBCCCCSSBCCEEEEEECCSCCGGGCCCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHT
T ss_pred             cccccCCccccCCCCCCccCEEEEEeCcccCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHhh
Confidence            445677889999999999999999999999853 7899999999999999999999999999999999999999999999


Q ss_pred             hcCCCCceEEEEEecCCCCceeeeeCCccChhhhHHhhccccccccCCCceEEEEecccCCccCCCcee
Q psy15857         85 QDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAGKPKLFFIQACQGDKLDAGVTI  153 (455)
Q Consensus        85 ~d~~~~d~~vvvilSHG~~g~I~g~D~~v~~~~I~~~F~~~~c~~L~gKPKlFfiQACRG~~~d~gv~~  153 (455)
                      ++|..+|||||||||||.+|.|||+|+.|++++|+++|++.+||+|+|||||||||||||++.|.|+..
T Consensus       106 ~dh~~~dc~vvvilSHG~~g~I~g~D~~v~l~~I~~~F~~~~CpsL~gKPKlFfIQACRG~~~d~Gv~~  174 (179)
T 3p45_A          106 VSHADADCFVCVFLSHGEGNHIYAYDAKIEIQTLTGLFKGDKCHSLVGKPKIFIIQACRGNQHDVPVIP  174 (179)
T ss_dssp             SCCTTBSCEEEEEESCEETTEEECSSSEEEHHHHHGGGSGGGCGGGTTSCEEEEEECC-----------
T ss_pred             hhcCCCCEEEEEEeccCCCCEEEEECCEEEHHHHHHhcccccChhhCCCCcEEEEECCCCCCCCCCccC
Confidence            999999999999999999999999999999999999999999999999999999999999999999854

>2dko_A Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 1nme_A 2h5i_A 2h5j_A 2h65_A 2xyg_A* 2xyh_A 2xyp_A* 2xzd_A 2xzt_A 2y0b_A 3edq_A 1gfw_A 1re1_A* 1pau_A* 1rhk_A* 1rhm_A* 1rhq_A* 1rhr_A* 1rhu_A* 1rhj_A* ...

Probab=100.00  E-value=3.2e-44  Score=323.04  Aligned_cols=140  Identities=36%  Similarity=0.635  Sum_probs=134.6

Q ss_pred             CCCceeCCCCceeEEEEEeCCCCCCC-CCCCCCChHHhHHHHHHHHHhCCcEEEEecCCCHHHHHHHHHHHHhhcCCCCc
Q psy15857         13 DADYYRMDHKHRGLALIFNHEHFDSP-HLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVIQNAIDEAAEQDYTDAD   91 (455)
Q Consensus        13 ~~~~Y~m~~~~~G~aLIInN~~F~~~-~l~~R~Gs~~D~~~L~~~F~~LGF~V~~~~nlt~~em~~~l~~~s~~d~~~~d   91 (455)
                      ..+.|+|+++|+|+||||||.+|... .+++|.||+.|+++|+++|++|||+|++++|+|++||.+.|++|++++|..+|
T Consensus         5 ~~~~Y~m~~~~rG~alIinn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~V~~~~dlt~~em~~~l~~~~~~dh~~~d   84 (146)
T 2dko_A            5 LDNSYKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEIVELMRDVSKEDHSKRS   84 (146)
T ss_dssp             CCCBCCCCSSEEEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHHSCCTTEE
T ss_pred             cccCccCCCCCceEEEEEeccccCCCCCcccCCCCHHHHHHHHHHHHHCCCEEEEeeCCCHHHHHHHHHHHHHhhcCCCC
Confidence            35789999999999999999999863 68999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEecCCCCceeeeeCCccChhhhHHhhccccccccCCCceEEEEecccCCccCCCce
Q psy15857         92 CFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAGKPKLFFIQACQGDKLDAGVT  152 (455)
Q Consensus        92 ~~vvvilSHG~~g~I~g~D~~v~~~~I~~~F~~~~c~~L~gKPKlFfiQACRG~~~d~gv~  152 (455)
                      ||||+|||||.+|.|||+|+.+++++|+++|++++||+|+|||||||||||||++.|.|++
T Consensus        85 c~vv~ilSHG~~g~i~g~D~~~~l~~i~~~F~~~~CpsL~gKPKlffiQACRG~~~d~gv~  145 (146)
T 2dko_A           85 SFVCVLLSHGEEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPKLFIIQACRGTELDCGIE  145 (146)
T ss_dssp             EEEEEEESCEETTEEEETTEEEEHHHHHHTTSTTTCGGGTTSCEEEEEESCCSSBCBCCCC
T ss_pred             eEEEEeccCCCCCEEEEeCCcEeHHHHHHHhccccChhhcCCCeEEEEECCCCCCCcCCcc
Confidence            9999999999999999999999999999999999999999999999999999999999874

>2ql9_A Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_A* 2ql5_A* 2qlb_A* 2qlf_A 2qlj_A* 3edr_A 3ibc_A 3ibf_A 1i51_A

Probab=100.00  E-value=2.6e-43  Score=324.66  Aligned_cols=142  Identities=38%  Similarity=0.647  Sum_probs=134.0

Q ss_pred             ccCCCCceeCCCCceeEEEEEeCCCCCC-CCCCCCCChHHhHHHHHHHHHhCCcEEEEecCCCHHHHHHHHHHHHhhcCC
Q psy15857         10 VEKDADYYRMDHKHRGLALIFNHEHFDS-PHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVIQNAIDEAAEQDYT   88 (455)
Q Consensus        10 ~~~~~~~Y~m~~~~~G~aLIInN~~F~~-~~l~~R~Gs~~D~~~L~~~F~~LGF~V~~~~nlt~~em~~~l~~~s~~d~~   88 (455)
                      ...+.+.|+|+++++|+||||||.+|.. ..+..|.||+.|+++|+++|++|||+|++++|+|++||.+.|+++++++|.
T Consensus        30 ~~~p~~~Y~m~~~~rG~aLIInn~~F~~~~~l~~R~Gt~~D~~~L~~~F~~LgF~V~v~~dlt~~em~~~l~~~s~~dh~  109 (173)
T 2ql9_A           30 DRVPTYQYNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVIVYNDCSCAKMQDLLKKASEEDHT  109 (173)
T ss_dssp             ----CCBCCCCSSEEEEEEEEECCCCCGGGCCCCCTTHHHHHHHHHHHHHHHTEEEEEEESCCHHHHHHHHHHHHTSCCT
T ss_pred             CCCcccccccCCCCceEEEEEeccccCCCCCCCCCCCcHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHhhcc
Confidence            3445789999999999999999999986 368999999999999999999999999999999999999999999999999


Q ss_pred             CCceEEEEEecCCCCceeeeeCCccChhhhHHhhccccccccCCCceEEEEecccCCccCCCc
Q psy15857         89 DADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAGKPKLFFIQACQGDKLDAGV  151 (455)
Q Consensus        89 ~~d~~vvvilSHG~~g~I~g~D~~v~~~~I~~~F~~~~c~~L~gKPKlFfiQACRG~~~d~gv  151 (455)
                      .+|||||||||||.+|.|||+|+.+++++|+++|++.+||+|+|||||||||||||++.|.|+
T Consensus       110 ~~dc~vvvilSHG~~g~I~g~D~~~~i~~I~~~F~~~~CpsL~gKPKlFfIQACRG~~~d~Gv  172 (173)
T 2ql9_A          110 NAACFACILLSHGEENVIYGKDGVTPIKDLTAHFRGDRCKTLLEKPKLFFIQACRGTELDDGI  172 (173)
T ss_dssp             TEEEEEEEEESCEETTEEEETTEEEEHHHHHGGGSTTTCGGGTTSCEEEEEESCCSSBCBCCB
T ss_pred             CCCeEEEeecCCCCCCEEEEcCCcEEHHHHHHHcCcccChhHcCCCeEEEEECCCCCCccCCC
Confidence            999999999999999999999999999999999999999999999999999999999999886

>1qtn_A Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_A* 3kjq_A* 2y1l_A 2c2z_A 1qdu_A* 1f9e_A*

Probab=100.00  E-value=3.8e-43  Score=321.83  Aligned_cols=144  Identities=37%  Similarity=0.616  Sum_probs=134.2

Q ss_pred             ccCCCCceeCCCCceeEEEEEeCCCCCCC--------CCCCCCChHHhHHHHHHHHHhCCcEEEEecCCCHHHHHHHHHH
Q psy15857         10 VEKDADYYRMDHKHRGLALIFNHEHFDSP--------HLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVIQNAIDE   81 (455)
Q Consensus        10 ~~~~~~~Y~m~~~~~G~aLIInN~~F~~~--------~l~~R~Gs~~D~~~L~~~F~~LGF~V~~~~nlt~~em~~~l~~   81 (455)
                      .+...+.|+|+++|+|+||||||.+|...        .+..|.||++|+++|+++|++|||+|+++.|+|++||.+.|++
T Consensus         9 ~~~~~~~Y~m~~~~rG~~LIinn~~F~~~~~~~~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~V~~~~dlt~~em~~~l~~   88 (164)
T 1qtn_A            9 SQTLDKVYQMKSKPRGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFEELHFEIKPHDDCTVEQIYEILKI   88 (164)
T ss_dssp             ----CCBCCCCCSSCCEEEEEECCCCHHHHHHCGGGTTCCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHH
T ss_pred             cccccccccCCCCCceEEEEEechhcCCccccccccccCcCCCCcHHHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHH
Confidence            34567889999999999999999999852        4889999999999999999999999999999999999999999


Q ss_pred             HHhhcCCCCceEEEEEecCCCCceeeeeCCc-cChhhhHHhhccccccccCCCceEEEEecccCCccCCCcee
Q psy15857         82 AAEQDYTDADCFVMAVLTHGEDGILHAKDVP-YKPKNLWSKFTADNCLTLAGKPKLFFIQACQGDKLDAGVTI  153 (455)
Q Consensus        82 ~s~~d~~~~d~~vvvilSHG~~g~I~g~D~~-v~~~~I~~~F~~~~c~~L~gKPKlFfiQACRG~~~d~gv~~  153 (455)
                      |++++|..+|||||||||||.+|.|||+|+. +++++|+++|++.+||+|+|||||||||||||++.+.|+.+
T Consensus        89 ~~~~dh~~~dc~vv~ilSHG~~g~i~g~D~~~v~i~~i~~~F~~~~CpsL~gKPKlFfiQACRG~~~d~gv~~  161 (164)
T 1qtn_A           89 YQLMDHSNMDCFICCILSHGDKGIIYGTDGQEAPIYELTSQFTGLKCPSLAGKPKVFFIQACQGDNYQKGIPV  161 (164)
T ss_dssp             HHHSCCTTCSCEEEEEESCEETTEEECTTSCEEEHHHHHGGGSTTTCGGGTTSCEEEEEESCSSSBCBCCCCC
T ss_pred             HHHhhccCCCEEEEEeCCCCCCCEEEeeCCCEeeHHHHHHHhccccChhhcCCCeEEEEECCCCCCccCCccC
Confidence            9999999999999999999999999999996 99999999999999999999999999999999999998753

>1pyo_A Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 3rjm_A* 2p2c_A 3r5j_A 3r6g_A 3r6l_A 3r7b_A 3r7n_A 3r7s_A

Probab=100.00  E-value=1.3e-42  Score=319.08  Aligned_cols=141  Identities=33%  Similarity=0.554  Sum_probs=134.8

Q ss_pred             CCCceeCCCCceeEEEEEeCCCCCC-CCCCCCCChHHhHHHHHHHHHhCCcEEEEecCCCHHHHHHHHHHHHh-hcCCCC
Q psy15857         13 DADYYRMDHKHRGLALIFNHEHFDS-PHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVIQNAIDEAAE-QDYTDA   90 (455)
Q Consensus        13 ~~~~Y~m~~~~~G~aLIInN~~F~~-~~l~~R~Gs~~D~~~L~~~F~~LGF~V~~~~nlt~~em~~~l~~~s~-~d~~~~   90 (455)
                      ..+.|+|+++++|+||||||.+|.. ..+..|.||+.|+++|+++|++|||+|+++.|+|++||.+.|++|++ ++|..+
T Consensus        22 ~~~~Y~m~~~~rG~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~V~~~~dlt~~em~~~l~~~~~~~dh~~~  101 (167)
T 1pyo_A           22 FQLAYRLQSRPRGLALVLSNVHFTGEKELEFRSGGDVDHSTLVTLFKLLGYDVHVLCDQTAQEMQEKLQNFAQLPAHRVT  101 (167)
T ss_dssp             GGGBCCCCCSSSEEEEEEECCCCCSSSCSCCCTTHHHHHHHHHHHHHHTTEEEEEEESCCHHHHHHHHHHHHTCGGGGTS
T ss_pred             ccccccCCCCCceEEEEEeCcccCCCCCCccCCCcHHHHHHHHHHHHHCCCEEEEeeCCCHHHHHHHHHHhhhhhhccCC
Confidence            3578999999999999999999986 36899999999999999999999999999999999999999999998 789999


Q ss_pred             ceEEEEEecCCCCceeeeeCCc-cChhhhHHhhccccccccCCCceEEEEecccCCccCCCcee
Q psy15857         91 DCFVMAVLTHGEDGILHAKDVP-YKPKNLWSKFTADNCLTLAGKPKLFFIQACQGDKLDAGVTI  153 (455)
Q Consensus        91 d~~vvvilSHG~~g~I~g~D~~-v~~~~I~~~F~~~~c~~L~gKPKlFfiQACRG~~~d~gv~~  153 (455)
                      |||||||||||.+|.|||+|+. |++++|+++|++++||+|+|||||||||||||++.+.|+.+
T Consensus       102 dc~vv~ilSHG~~g~i~g~D~~~v~l~~i~~~F~~~~CpsL~gKPKlffiQACRG~~~d~Gv~~  165 (167)
T 1pyo_A          102 DSCIVALLSHGVEGAIYGVDGKLLQLQEVFQLFDNANCPSLQNKPKMFFIQACRGDETDRGVDQ  165 (167)
T ss_dssp             SEEEEEEESCEETTEEECTTSCEEEHHHHHHHTSTTTCGGGTTSCEEEEEESCSSSBCBCCEEC
T ss_pred             CEEEEEeCCCCCCCeEEEeCCCEEcHHHHHHHhcccCChhHcCCCeEEEEECCCCCCCCCCccC
Confidence            9999999999999999999996 99999999999999999999999999999999999999864

>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ; 1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A* 1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A* 2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A* 3d6h_A* 2hbz_A* 2hbr_A* ...

Probab=100.00  E-value=5.7e-38  Score=291.09  Aligned_cols=139  Identities=26%  Similarity=0.431  Sum_probs=128.1

Q ss_pred             ccccCCCCceeCCCCc--eeEEEEEeCCCCCCCCCCCCCChHHhHHHHHHHHHhCCcEEEEecCCCHHHHHHHHHHHHh-
Q psy15857          8 STVEKDADYYRMDHKH--RGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVIQNAIDEAAE-   84 (455)
Q Consensus         8 ~~~~~~~~~Y~m~~~~--~G~aLIInN~~F~~~~l~~R~Gs~~D~~~L~~~F~~LGF~V~~~~nlt~~em~~~l~~~s~-   84 (455)
                      ++.++..+.|+|++++  +|+||||||.+|.  .+..|.|+++|+++|+++|++|||+|+++.|+|.+||.+.|++|++ 
T Consensus        25 ~~~~~~~~~Y~m~~~~~~~g~ALIInn~~f~--~~~~R~G~~~Da~~L~~~f~~LgF~V~~~~dlt~~em~~~l~~f~~~  102 (178)
T 2h54_A           25 IWKQKSAEIYPIMDKSSRTRLALIICNEEFD--SIPRRTGAEVDITGMTMLLQNLGYSVDVKKNLTASDMTTELEAFAHR  102 (178)
T ss_dssp             HC---CCSBCCCCCTTTCCCEEEEEECCCCS--SSCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHTC
T ss_pred             ccccCcccccCCCCCCCcCCEEEEEehhhcC--CCccCCCCHHHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhh
Confidence            4566788999999865  9999999999997  6899999999999999999999999999999999999999999986 


Q ss_pred             hcCCCCceEEEEEecCCCCceeeeeCC------ccChhhhHHhhccccccccCCCceEEEEecccCCccC
Q psy15857         85 QDYTDADCFVMAVLTHGEDGILHAKDV------PYKPKNLWSKFTADNCLTLAGKPKLFFIQACQGDKLD  148 (455)
Q Consensus        85 ~d~~~~d~~vvvilSHG~~g~I~g~D~------~v~~~~I~~~F~~~~c~~L~gKPKlFfiQACRG~~~d  148 (455)
                      .+|+.+||++|+|||||.+|.|||+|+      .|++++|+++|++.+||+|++||||||||||||++..
T Consensus       103 ~d~~~~d~~v~~~lsHG~~g~i~g~D~~~~~~~~v~l~~I~~~f~~~~CpsL~gKPKlffiqACRg~~~g  172 (178)
T 2h54_A          103 PEHKTSDSTFLVFMSHGIREGICGKKHSEQVPDILQLNAIFNMLNTKNCPSLKDKPKVIIIQACRGDSPG  172 (178)
T ss_dssp             GGGGGCSCEEEEEESCBCSSCEECTTCCSSSCCEECHHHHHHHHSTTTCGGGTTSCEEEEEESCSSSBCC
T ss_pred             hhcCCCCEEEEEEecCCCCCeEEeecCCcccCcEEEHHHHHHHHhhcCChhhcCCceEEEEECCCCCCCC
Confidence            579999999999999999999999998      4999999999999999999999999999999998743

>3uoa_B Mucosa-associated lymphoid tissue lymphoma transl protein 1; paracaspase, lymphoma, NF-KB signalling, caspase fold, immun fold, hydrolase-hydrolase inhibitor complex; 1.75A {Homo sapiens} PDB: 3uo8_B 3v55_A 3v4l_A* 3v4o_A*

Probab=99.96  E-value=2.7e-29  Score=257.59  Aligned_cols=187  Identities=16%  Similarity=0.190  Sum_probs=150.9

Q ss_pred             ceeEEEEEeCCCCCCCCCCCCCChHHhHHHHHHHHHhCCcEEEEecCCCHHHHHHHHHHHHhhcCCCCceEEEEEecCCC
Q psy15857         23 HRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVIQNAIDEAAEQDYTDADCFVMAVLTHGE  102 (455)
Q Consensus        23 ~~G~aLIInN~~F~~~~l~~R~Gs~~D~~~L~~~F~~LGF~V~~~~nlt~~em~~~l~~~s~~d~~~~d~~vvvilSHG~  102 (455)
                      .+++||||+|.+|.  ..+++.|+.+|+++|+++|+++||+|.+..|+|+++|.+.|++|++.. ...||++|+|+|||.
T Consensus         4 ~~r~ALIIGn~~Y~--~~~~L~ga~~DA~~L~~~L~~lGF~V~~l~DlT~~eI~~aL~~f~~~~-~~~D~~l~yfsGHG~   80 (390)
T 3uoa_B            4 KDKVALLIGNMNYR--EHPKLKAPLVDVYELTNLLRQLDFKVVSLLDLTEYEMRNAVDEFLLLL-DKGVYGLLYYAGHGY   80 (390)
T ss_dssp             SCEEEEEEECCCCS--SSCCCSTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHHTC-CTTCEEEEEEESCEE
T ss_pred             CCCEEEEEEecCCC--CcccCCChHHHHHHHHHHHHHcCCeEEEeecCCHHHHHHHHHHHHhhC-CCCCEEEEEEecCcc
Confidence            57999999999998  467889999999999999999999999999999999999999999865 456999999999997


Q ss_pred             C----ceeeeeCCc--------cChhhhHHhhccccccccCCCceEEEEecccCC-ccCCCceeeeccCCCCCCCcCCCC
Q psy15857        103 D----GILHAKDVP--------YKPKNLWSKFTADNCLTLAGKPKLFFIQACQGD-KLDAGVTIRTQVDGHPSNTYSIPL  169 (455)
Q Consensus       103 ~----g~I~g~D~~--------v~~~~I~~~F~~~~c~~L~gKPKlFfiQACRG~-~~d~gv~~~~~~d~~~~~~~~iP~  169 (455)
                      +    +.+++.|+.        +++++|++.|..     +.+||||||||||||. ..+.++      +    ....+|.
T Consensus        81 ~~~g~~yL~p~Da~~~~~~~~~isl~~Ll~~l~~-----~~~K~kL~ILDACrg~~~~~~~~------~----~~~~ip~  145 (390)
T 3uoa_B           81 ENFGNSFMVPVDAPNPYRSENCLCVQNILKLMQE-----KETGLNVFLLDMCRKRNDYDDTI------P----ILDALKV  145 (390)
T ss_dssp             EETTEEEECCTTCCSSCCGGGSEEHHHHHHHHHH-----TTCSEEEEEEESCCCCCTTCCCC------C----CCCCCCC
T ss_pred             ccCCcceEEecCCCccccccceeeHHHHHHHHHh-----cCCCceEEEEECCCCCCcccccc------c----ccccCcc
Confidence            5    577888863        789999999874     5899999999999984 443321      1    2246788


Q ss_pred             CCCEEEEEccCCCCccccC-------chhHHHHHHHHhHh-HHHHhhhcccCCCC--ccccccccccc
Q psy15857        170 HADFLMAYSTISDSPMFGQ-------RFGLKDKCSKVVSK-TYQVMSSNVDTSNG--ECQTDGHESHT  227 (455)
Q Consensus       170 ~aD~Li~yST~pG~vS~R~-------~~fIq~Lc~~~~~~-~~~~m~~~~~~~~~--e~~~~~~~~~~  227 (455)
                      .+|+|++|||.||++|||+       .||||+||+.|.+. .+..|..+|++.+.  +-....|.|+.
T Consensus       146 ~ad~Li~yAT~pG~~A~r~~~d~~~gS~FtqaL~e~L~~~~dl~~LLt~Vn~~Va~~~~~~~KQ~P~~  213 (390)
T 3uoa_B          146 TANIVFGYATCQGAEAFEIQHSGLANGIFMKFLKDRLLEDKKITVLLDEVAEDMGKCHLTKGKQALEI  213 (390)
T ss_dssp             CSCEEEEESSCTTCCCEECSSCTTCCCHHHHHHTTTTTCSSCHHHHHHHHHHHHTTCTTTTTTCCCEE
T ss_pred             cCCcEEEEEcCCCcEeeecCCCCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHhhccccCCcccCcc
Confidence            9999999999999999995       38999999988763 13345555665554  22233456654

>3p45_A Caspase-6; protease, huntington'S disease, physio PH, competitive inhibition, hydrolase; 2.53A {Homo sapiens}

Probab=99.92  E-value=2.2e-26  Score=212.77  Aligned_cols=133  Identities=27%  Similarity=0.364  Sum_probs=115.5

Q ss_pred             CcccccccCccccccCCCCcceEEEEEeCCCCCCC-CCCCCCCChHhHHHHHHHHhhcCCEEEEecCccHHHHHHHhhcC
Q psy15857        278 PVAKSTVEKDADYYRMDHKHRGLALIFNHEHFDSP-HLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVIQNAIDEG  356 (455)
Q Consensus       278 ~~a~~~~~~~~~~Y~m~~~~rG~~lI~n~~~F~~~-~l~~R~Gt~~D~~~l~~~~~~Lgf~V~~~~d~~~~~i~~~l~k~  356 (455)
                      ..++||+.++++.|+|+|+|||+||||||++|+.. .|++|.||++|+++|+++|++|||+|++|+|||++||.++|+  
T Consensus        24 ~~~~~~~~~~~~~Y~m~~~~rG~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~F~~LGF~V~~~~dlt~~em~~~l~--  101 (179)
T 3p45_A           24 AFYKREMFDPAEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFNDLKAEELLLKIH--  101 (179)
T ss_dssp             -------CCTTCBCCCCSSBCCEEEEEECCSCCGGGCCCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHH--
T ss_pred             cccccccCCccccCCCCCCccCEEEEEeCcccCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHH--
Confidence            45888999999999999999999999999999864 799999999999999999999999999999999999999998  


Q ss_pred             CCcccccccccccccCCCCcccEEEEEEeccCCCCCCCCCCCcHHhHHHHHHHHHhcCCeEEEecCCCH
Q psy15857        357 PVAKSTVEKDADYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEF  425 (455)
Q Consensus       357 ~~~~s~~~~~~~~Y~m~~~~~g~~lIin~~~F~~~~l~~R~Gs~~D~e~L~~~F~~LgF~V~~~~dlt~  425 (455)
                                 +..+.+|...+|++++.++|+..+.++..+|. ++++.|.+.|+.-. |+.+.++|+.
T Consensus       102 -----------~~~~~dh~~~dc~vvvilSHG~~g~I~g~D~~-v~l~~I~~~F~~~~-CpsL~gKPKl  157 (179)
T 3p45_A          102 -----------EVSTVSHADADCFVCVFLSHGEGNHIYAYDAK-IEIQTLTGLFKGDK-CHSLVGKPKI  157 (179)
T ss_dssp             -----------HHHTSCCTTBSCEEEEEESCEETTEEECSSSE-EEHHHHHGGGSGGG-CGGGTTSCEE
T ss_pred             -----------HHhhhhcCCCCEEEEEEeccCCCCEEEEECCE-EEHHHHHHhccccc-ChhhCCCCcE
Confidence                       34567899999999999999999889999999 99999999998766 5666666664

>2dko_A Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 1nme_A 2h5i_A 2h5j_A 2h65_A 2xyg_A* 2xyh_A 2xyp_A* 2xzd_A 2xzt_A 2y0b_A 3edq_A 1gfw_A 1re1_A* 1pau_A* 1rhk_A* 1rhm_A* 1rhq_A* 1rhr_A* 1rhu_A* 1rhj_A* ...

Probab=99.90  E-value=1.2e-24  Score=195.49  Aligned_cols=123  Identities=24%  Similarity=0.322  Sum_probs=110.1

Q ss_pred             cccccCCCCcceEEEEEeCCCCCCC-CCCCCCCChHhHHHHHHHHhhcCCEEEEecCccHHHHHHHhhcCCCcccccccc
Q psy15857        288 ADYYRMDHKHRGLALIFNHEHFDSP-HLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVIQNAIDEGPVAKSTVEKD  366 (455)
Q Consensus       288 ~~~Y~m~~~~rG~~lI~n~~~F~~~-~l~~R~Gt~~D~~~l~~~~~~Lgf~V~~~~d~~~~~i~~~l~k~~~~~s~~~~~  366 (455)
                      ++.|+|+++|||+||||||++|+.+ +|++|.||++|+++|+++|++|||+|++|+|+|++||.+.|+            
T Consensus         6 ~~~Y~m~~~~rG~alIinn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~V~~~~dlt~~em~~~l~------------   73 (146)
T 2dko_A            6 DNSYKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEIVELMR------------   73 (146)
T ss_dssp             CCBCCCCSSEEEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHH------------
T ss_pred             ccCccCCCCCceEEEEEeccccCCCCCcccCCCCHHHHHHHHHHHHHCCCEEEEeeCCCHHHHHHHHH------------
Confidence            3679999999999999999999864 799999999999999999999999999999999999999998            


Q ss_pred             cccccCCCCcccEEEEEEeccCCCCCCCCCCCcHHhHHHHHHHHHhcCCeEEEecCCCH
Q psy15857        367 ADYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEF  425 (455)
Q Consensus       367 ~~~Y~m~~~~~g~~lIin~~~F~~~~l~~R~Gs~~D~e~L~~~F~~LgF~V~~~~dlt~  425 (455)
                       ...+.+|...+|++++.++|+..+.++..+| .++++.|.+.|+.-. |+.+.++|+.
T Consensus        74 -~~~~~dh~~~dc~vv~ilSHG~~g~i~g~D~-~~~l~~i~~~F~~~~-CpsL~gKPKl  129 (146)
T 2dko_A           74 -DVSKEDHSKRSSFVCVLLSHGEEGIIFGTNG-PVDLKKITNFFRGDR-CRSLTGKPKL  129 (146)
T ss_dssp             -HHHHSCCTTEEEEEEEEESCEETTEEEETTE-EEEHHHHHHTTSTTT-CGGGTTSCEE
T ss_pred             -HHHHhhcCCCCeEEEEeccCCCCCEEEEeCC-cEeHHHHHHHhcccc-ChhhcCCCeE
Confidence             4556789999999999999999888999999 799999999997665 5666666653

>1qtn_A Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_A* 3kjq_A* 2y1l_A 2c2z_A 1qdu_A* 1f9e_A*

Probab=99.89  E-value=2.7e-24  Score=196.73  Aligned_cols=125  Identities=26%  Similarity=0.337  Sum_probs=111.8

Q ss_pred             ccccccCCCCcceEEEEEeCCCCCCC--------CCCCCCCChHhHHHHHHHHhhcCCEEEEecCccHHHHHHHhhcCCC
Q psy15857        287 DADYYRMDHKHRGLALIFNHEHFDSP--------HLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVIQNAIDEGPV  358 (455)
Q Consensus       287 ~~~~Y~m~~~~rG~~lI~n~~~F~~~--------~l~~R~Gt~~D~~~l~~~~~~Lgf~V~~~~d~~~~~i~~~l~k~~~  358 (455)
                      ..+.|+|+++|||+||||||++|+..        .|+.|.||++|+++|+++|++|||+|++|+|+|++||.+.|+    
T Consensus        12 ~~~~Y~m~~~~rG~~LIinn~~F~~~~~~~~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~V~~~~dlt~~em~~~l~----   87 (164)
T 1qtn_A           12 LDKVYQMKSKPRGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFEELHFEIKPHDDCTVEQIYEILK----   87 (164)
T ss_dssp             -CCBCCCCCSSCCEEEEEECCCCHHHHHHCGGGTTCCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHH----
T ss_pred             ccccccCCCCCceEEEEEechhcCCccccccccccCcCCCCcHHHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHH----
Confidence            45679999999999999999999842        599999999999999999999999999999999999999998    


Q ss_pred             cccccccccccccCCCCcccEEEEEEeccCCCCCCCCCCCcHHhHHHHHHHHHhcCCeEEEecCCCH
Q psy15857        359 AKSTVEKDADYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEF  425 (455)
Q Consensus       359 ~~s~~~~~~~~Y~m~~~~~g~~lIin~~~F~~~~l~~R~Gs~~D~e~L~~~F~~LgF~V~~~~dlt~  425 (455)
                               ....++|...+|++++.++|+..+.+++.+|..++++.|.+.|.... |+.+.++|+.
T Consensus        88 ---------~~~~~dh~~~dc~vv~ilSHG~~g~i~g~D~~~v~i~~i~~~F~~~~-CpsL~gKPKl  144 (164)
T 1qtn_A           88 ---------IYQLMDHSNMDCFICCILSHGDKGIIYGTDGQEAPIYELTSQFTGLK-CPSLAGKPKV  144 (164)
T ss_dssp             ---------HHHHSCCTTCSCEEEEEESCEETTEEECTTSCEEEHHHHHGGGSTTT-CGGGTTSCEE
T ss_pred             ---------HHHHhhccCCCEEEEEeCCCCCCCEEEeeCCCEeeHHHHHHHhcccc-ChhhcCCCeE
Confidence                     45667899999999999999998889999999899999999997755 5666666654

>2ql9_A Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_A* 2ql5_A* 2qlb_A* 2qlf_A 2qlj_A* 3edr_A 3ibc_A 3ibf_A 1i51_A

Probab=99.89  E-value=4.1e-24  Score=196.76  Aligned_cols=123  Identities=21%  Similarity=0.320  Sum_probs=110.3

Q ss_pred             cccccCCCCcceEEEEEeCCCCCCC-CCCCCCCChHhHHHHHHHHhhcCCEEEEecCccHHHHHHHhhcCCCcccccccc
Q psy15857        288 ADYYRMDHKHRGLALIFNHEHFDSP-HLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVIQNAIDEGPVAKSTVEKD  366 (455)
Q Consensus       288 ~~~Y~m~~~~rG~~lI~n~~~F~~~-~l~~R~Gt~~D~~~l~~~~~~Lgf~V~~~~d~~~~~i~~~l~k~~~~~s~~~~~  366 (455)
                      +..|+|+++|||+||||||++|+.. +|+.|.||++|+++|+++|++|||+|++|+|+|++||.+.|+            
T Consensus        34 ~~~Y~m~~~~rG~aLIInn~~F~~~~~l~~R~Gt~~D~~~L~~~F~~LgF~V~v~~dlt~~em~~~l~------------  101 (173)
T 2ql9_A           34 TYQYNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVIVYNDCSCAKMQDLLK------------  101 (173)
T ss_dssp             CCBCCCCSSEEEEEEEEECCCCCGGGCCCCCTTHHHHHHHHHHHHHHHTEEEEEEESCCHHHHHHHHH------------
T ss_pred             ccccccCCCCceEEEEEeccccCCCCCCCCCCCcHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHH------------
Confidence            5779999999999999999999864 799999999999999999999999999999999999999998            


Q ss_pred             cccccCCCCcccEEEEEEeccCCCCCCCCCCCcHHhHHHHHHHHHhcCCeEEEecCCCH
Q psy15857        367 ADYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEF  425 (455)
Q Consensus       367 ~~~Y~m~~~~~g~~lIin~~~F~~~~l~~R~Gs~~D~e~L~~~F~~LgF~V~~~~dlt~  425 (455)
                       ...+++|...+|++++.++|+..+.++..+|. ++++.|...|..-. |+.+.++|+.
T Consensus       102 -~~s~~dh~~~dc~vvvilSHG~~g~I~g~D~~-~~i~~I~~~F~~~~-CpsL~gKPKl  157 (173)
T 2ql9_A          102 -KASEEDHTNAACFACILLSHGEENVIYGKDGV-TPIKDLTAHFRGDR-CKTLLEKPKL  157 (173)
T ss_dssp             -HHHTSCCTTEEEEEEEEESCEETTEEEETTEE-EEHHHHHGGGSTTT-CGGGTTSCEE
T ss_pred             -HHHHhhccCCCeEEEeecCCCCCCEEEEcCCc-EEHHHHHHHcCccc-ChhHcCCCeE
Confidence             45567899999999999999998889999995 89999999997755 4666666653

>2nn3_C Caspase-1; cysteine protease, hydrolase; 3.00A {Spodoptera frugiperda}

Probab=99.89  E-value=5.4e-24  Score=213.00  Aligned_cols=140  Identities=36%  Similarity=0.519  Sum_probs=107.3

Q ss_pred             cCCCCCCccccccCccccCCCcccccccCccccccCCCCcceEEEEEeCCCCCCCCCCCCCCChHhHHHHHHHHhhcCCE
Q psy15857        258 VGKDEGDVLGFNFGRTRMKGPVAKSTVEKDADYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFV  337 (455)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Y~m~~~~rG~~lI~n~~~F~~~~l~~R~Gt~~D~~~l~~~~~~Lgf~  337 (455)
                      .|+|.+||++.  ..+..+.+.|+||.++.++.|+|++++||+||||||++|....|+.|.||++|+++|.++|++|||+
T Consensus        22 ~~~~~~d~~~~--~~~~~~~~~~~~~~~~~~~~Y~m~~~~rg~aLIInN~~F~~~~l~~R~Gt~~Da~~L~~~f~~LGF~   99 (310)
T 2nn3_C           22 GGGDEGDALGS--NSSSQPNRVARMPVDRNAPYYNMNHKHRGMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGFK   99 (310)
T ss_dssp             --------------------------CCSSCSBCCCCSSBCCEEEEEECCCCSSTTCCCCTTHHHHHHHHHHHHHHTTCE
T ss_pred             CCCCccccCCC--ccCCCCcceeecccCCccccccCCCCCcCEEEEEechhcCCCCcccCCCCHHHHHHHHHHHHHCCCE
Confidence            35688888766  2334445579999999999999999999999999999998667999999999999999999999999


Q ss_pred             EEEecCccHHHHHHHhhcCCCcccccccccccccCCCCcccEEEEEEeccCCCCCCCCCCCcHHhHHHHHHHHHhc
Q psy15857        338 VKPYHDPEFKVIQNAIDEGPVAKSTVEKDADYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNL  413 (455)
Q Consensus       338 V~~~~d~~~~~i~~~l~k~~~~~s~~~~~~~~Y~m~~~~~g~~lIin~~~F~~~~l~~R~Gs~~D~e~L~~~F~~L  413 (455)
                      |+++.|+|++||.+.|+             +..+.+|...+|++++..+|+..+.+++.+| .++++.|...|+.-
T Consensus       100 V~~~~dlt~~em~~~l~-------------~f~~~dh~~~D~~vv~ilSHG~~g~i~g~D~-~v~l~~I~~~f~~~  161 (310)
T 2nn3_C          100 VTVFPNLKSEEINKFIQ-------------QTAEMDHSDADCLLVAVLTAGELGMLYAKDT-HYKPDNLWYYFTAD  161 (310)
T ss_dssp             EEEEESCCHHHHHHHHH-------------HHHSSCGGGBSCEEEEEEEEEETTEEECSSC-EECTHHHHGGGSTT
T ss_pred             EEEecCCCHHHHHHHHH-------------HHHHhccCCCCEEEEEEeCCCCCCEEEecCC-cEEHHHHHHHhccc
Confidence            99999999999999998             4556788899999999999998888889998 48899999999753

>1pyo_A Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 3rjm_A* 2p2c_A 3r5j_A 3r6g_A 3r6l_A 3r7b_A 3r7n_A 3r7s_A

Probab=99.88  E-value=1.4e-23  Score=192.54  Aligned_cols=125  Identities=20%  Similarity=0.309  Sum_probs=111.0

Q ss_pred             ccccccCCCCcceEEEEEeCCCCCCC-CCCCCCCChHhHHHHHHHHhhcCCEEEEecCccHHHHHHHhhcCCCccccccc
Q psy15857        287 DADYYRMDHKHRGLALIFNHEHFDSP-HLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVIQNAIDEGPVAKSTVEK  365 (455)
Q Consensus       287 ~~~~Y~m~~~~rG~~lI~n~~~F~~~-~l~~R~Gt~~D~~~l~~~~~~Lgf~V~~~~d~~~~~i~~~l~k~~~~~s~~~~  365 (455)
                      .++.|+|+++|||+||||||++|+.. .|+.|.||++|+++|+++|++|||+|++|+|+|++||.+.|+           
T Consensus        22 ~~~~Y~m~~~~rG~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~V~~~~dlt~~em~~~l~-----------   90 (167)
T 1pyo_A           22 FQLAYRLQSRPRGLALVLSNVHFTGEKELEFRSGGDVDHSTLVTLFKLLGYDVHVLCDQTAQEMQEKLQ-----------   90 (167)
T ss_dssp             GGGBCCCCCSSSEEEEEEECCCCCSSSCSCCCTTHHHHHHHHHHHHHHTTEEEEEEESCCHHHHHHHHH-----------
T ss_pred             ccccccCCCCCceEEEEEeCcccCCCCCCccCCCcHHHHHHHHHHHHHCCCEEEEeeCCCHHHHHHHHH-----------
Confidence            35789999999999999999999864 799999999999999999999999999999999999999998           


Q ss_pred             cccccc-CCCCcccEEEEEEeccCCCCCCCCCCCcHHhHHHHHHHHHhcCCeEEEecCCCH
Q psy15857        366 DADYYR-MDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEF  425 (455)
Q Consensus       366 ~~~~Y~-m~~~~~g~~lIin~~~F~~~~l~~R~Gs~~D~e~L~~~F~~LgF~V~~~~dlt~  425 (455)
                        +... .+|...+|++++.++|+..+.+++.+|..++++.|...|+.-. |+.+.++|+.
T Consensus        91 --~~~~~~dh~~~dc~vv~ilSHG~~g~i~g~D~~~v~l~~i~~~F~~~~-CpsL~gKPKl  148 (167)
T 1pyo_A           91 --NFAQLPAHRVTDSCIVALLSHGVEGAIYGVDGKLLQLQEVFQLFDNAN-CPSLQNKPKM  148 (167)
T ss_dssp             --HHHTCGGGGTSSEEEEEEESCEETTEEECTTSCEEEHHHHHHHTSTTT-CGGGTTSCEE
T ss_pred             --HhhhhhhccCCCEEEEEeCCCCCCCeEEEeCCCEEcHHHHHHHhcccC-ChhHcCCCeE
Confidence              3444 5788899999999999998889999998899999999997655 4555566653

>3od5_A Caspase-6; caspase domain, apoptotic protease, hydrolase-hydrolase INHI complex; 1.60A {Homo sapiens} SCOP: c.17.1.0 PDB: 3k7e_A 3s70_A 3v6m_A 3v6l_A 3nr2_A 4fxo_A 2wdp_A 3nkf_A 3s8e_A 4ejf_A 3qnw_A* 3p4u_A* 3p45_B 3qnw_B* 3p4u_B*

Probab=99.87  E-value=4.7e-23  Score=203.61  Aligned_cols=121  Identities=29%  Similarity=0.389  Sum_probs=108.2

Q ss_pred             ccccccCccccccCCCCcceEEEEEeCCCCCCC-CCCCCCCChHhHHHHHHHHhhcCCEEEEecCccHHHHHHHhhcCCC
Q psy15857        280 AKSTVEKDADYYRMDHKHRGLALIFNHEHFDSP-HLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVIQNAIDEGPV  358 (455)
Q Consensus       280 a~~~~~~~~~~Y~m~~~~rG~~lI~n~~~F~~~-~l~~R~Gt~~D~~~l~~~~~~Lgf~V~~~~d~~~~~i~~~l~k~~~  358 (455)
                      ++||++++++.|+|+++|||+||||||++|... .|++|.||++|+++|+++|++|||+|++++|||++||.+.|+    
T Consensus         3 ~~~~~~~~~~~Y~m~~~~rg~aLIInn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LGF~V~~~~dlt~~em~~~l~----   78 (278)
T 3od5_A            3 YKREMFDPAEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFNDLKAEELLLKIH----   78 (278)
T ss_dssp             -----CCTTCBCCCCSSBCCEEEEEECCCCCGGGCCCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHH----
T ss_pred             CccCCCCcccccCCCCCCcCEEEEEeccccCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHH----
Confidence            578999999999999999999999999999853 799999999999999999999999999999999999999998    


Q ss_pred             cccccccccccccCCCCcccEEEEEEeccCCCCCCCCCCCcHHhHHHHHHHHHhcC
Q psy15857        359 AKSTVEKDADYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLG  414 (455)
Q Consensus       359 ~~s~~~~~~~~Y~m~~~~~g~~lIin~~~F~~~~l~~R~Gs~~D~e~L~~~F~~Lg  414 (455)
                               +..+.+|...+|++++.++|+..+.+++.+|. ++++.|...|+.-.
T Consensus        79 ---------~~~~~~h~~~d~~vv~ilSHG~~g~i~g~D~~-v~l~~I~~~f~~~~  124 (278)
T 3od5_A           79 ---------EVSTVSHADADCFVCVFLSHGEGNHIYAYDAK-IEIQTLTGLFKGDK  124 (278)
T ss_dssp             ---------HHHHSCCTTBSCEEEEEESCEETTEEECSSSE-EEHHHHHHTTSTTT
T ss_pred             ---------HHHhhcccCCCEEEEEEECCCCCCEEEEeCCe-EEHHHHHHHhcccc
Confidence                     45567899999999999999998889999998 99999999997643

>3sir_A Caspase; hydrolase; 2.68A {Drosophila melanogaster} PDB: 3sip_A

Probab=99.87  E-value=7.9e-23  Score=200.09  Aligned_cols=119  Identities=35%  Similarity=0.522  Sum_probs=99.5

Q ss_pred             ccccCccccccCCCCcceEEEEEeCCCCCCCCCCCCCCChHhHHHHHHHHhhcCCEEEEecCccHHHHHHHhhcCCCccc
Q psy15857        282 STVEKDADYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVIQNAIDEGPVAKS  361 (455)
Q Consensus       282 ~~~~~~~~~Y~m~~~~rG~~lI~n~~~F~~~~l~~R~Gt~~D~~~l~~~~~~Lgf~V~~~~d~~~~~i~~~l~k~~~~~s  361 (455)
                      +|++++++.|+|+|+|||+||||||++|....|++|.||++|+++|+++|++|||+|++++|||++||.+.|+       
T Consensus         4 ~~~~~~~~~Y~m~~~~rg~aLIInn~~f~~~~l~~R~G~~~D~~~L~~~f~~LGF~V~~~~dlt~~em~~~l~-------   76 (259)
T 3sir_A            4 SVTDRHAAEYNMRHKNRGMALIFNHEHFEVPTLKSRAGTNVDCENLTRVLKQLDFEVTVYKDCRYKDILRTIE-------   76 (259)
T ss_dssp             SCCCSSCSBCCCCSSEEEEEEEEEECCC-----------CCHHHHHHHHHHHTTCEEEEEEECSHHHHHHHHH-------
T ss_pred             CCCCCccCcCCCCCCCccEEEEEeccccCCCCCCCCCCcHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHH-------
Confidence            5788999999999999999999999999866799999999999999999999999999999999999999998       


Q ss_pred             ccccccccccCCCCcccEEEEEEeccCCCCCCCCCCCcHHhHHHHHHHHHhcC
Q psy15857        362 TVEKDADYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLG  414 (455)
Q Consensus       362 ~~~~~~~~Y~m~~~~~g~~lIin~~~F~~~~l~~R~Gs~~D~e~L~~~F~~Lg  414 (455)
                            +..+++|...+|++++.++|+..+.+++.+|. ++++.|...|+.-.
T Consensus        77 ------~~~~~~h~~~d~~v~~~lsHG~~g~i~~~D~~-v~l~~i~~~f~~~~  122 (259)
T 3sir_A           77 ------YSASQNHSDSDCILVAILSHGEMGYIYAKDTQ-YKLDNIWSFFTANH  122 (259)
T ss_dssp             ------HHHTSCCTTEEEEEEEEEECTTCCCCCCTTHH-HHHHHTTGGGSTTT
T ss_pred             ------HHHHhhccCCCEEEEEEecCCCCCeEEeCCCc-EEHHHHHHHhhhcc
Confidence                  45567899999999999999999889999885 88888888887543

>1m72_A Caspase-1; caspase, cysteine protease, hydrolase-hydrolase inhibitor CO; 2.30A {Spodoptera frugiperda} SCOP: c.17.1.1 PDB: 3sip_B

Probab=99.86  E-value=2e-22  Score=198.59  Aligned_cols=124  Identities=36%  Similarity=0.524  Sum_probs=112.8

Q ss_pred             CCcccccccCccccccCCCCcceEEEEEeCCCCCCCCCCCCCCChHhHHHHHHHHhhcCCEEEEecCccHHHHHHHhhcC
Q psy15857        277 GPVAKSTVEKDADYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVIQNAIDEG  356 (455)
Q Consensus       277 ~~~a~~~~~~~~~~Y~m~~~~rG~~lI~n~~~F~~~~l~~R~Gt~~D~~~l~~~~~~Lgf~V~~~~d~~~~~i~~~l~k~  356 (455)
                      ...|+||+++.++.|+|++++||+||||||++|....|+.|.||++|+++|.++|++|||+|++++|+|++||.+.|+  
T Consensus        11 ~~~~~~~~~~~~~~Y~m~~~~rg~aLIInn~~f~~~~l~~R~g~~~Da~~L~~~f~~LGF~V~~~~dlt~~em~~~l~--   88 (272)
T 1m72_A           11 NRVARMPVDRNAPYYNMNHKHRGMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGFKVTVFPNLKSEEINKFIQ--   88 (272)
T ss_dssp             -CEEECCSCTTCSBCCCCSSEEEEEEEEECCCCSSTTCCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHH--
T ss_pred             cceeeccCCcccccccCCCCCCCEEEEEechhcCCCCcccCCCCHHHHHHHHHHHHHCCCEEEEecCcCHHHHHHHHH--
Confidence            346999999999999999999999999999999865799999999999999999999999999999999999999998  


Q ss_pred             CCcccccccccccccCCCCcccEEEEEEeccCCCCCCCCCCCcHHhHHHHHHHHHhcC
Q psy15857        357 PVAKSTVEKDADYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLG  414 (455)
Q Consensus       357 ~~~~s~~~~~~~~Y~m~~~~~g~~lIin~~~F~~~~l~~R~Gs~~D~e~L~~~F~~Lg  414 (455)
                                 +..+.+|...+|++++..+|+..+.+++.+|. ++++.|...|+.-.
T Consensus        89 -----------~~~~~dh~~~d~~v~~~lsHG~~~~i~~~D~~-v~l~~i~~~f~~~~  134 (272)
T 1m72_A           89 -----------QTAEMDHSDADCLLVAVLTHGELGMLYAKDTH-YKPDNLWYYFTADK  134 (272)
T ss_dssp             -----------HHHTSCCTTEEEEEEEEESCEETTEEECSSSE-ECTTHHHHTTSTTT
T ss_pred             -----------HHHHhhcCCCCEEEEEEcCCCCCCEEEecCCc-EEHHHHHHHhcccc
Confidence                       45567889999999999999988888899984 88999999997543

>3h11_B Caspase-8; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} SCOP: c.17.1.1 PDB: 2k7z_A 1i4e_B 2fun_B 2c2z_B*

Probab=99.85  E-value=4.5e-22  Score=195.93  Aligned_cols=114  Identities=28%  Similarity=0.371  Sum_probs=104.5

Q ss_pred             cccccCCCCcceEEEEEeCCCCCC--------CCCCCCCCChHhHHHHHHHHhhcCCEEEEecCccHHHHHHHhhcCCCc
Q psy15857        288 ADYYRMDHKHRGLALIFNHEHFDS--------PHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVIQNAIDEGPVA  359 (455)
Q Consensus       288 ~~~Y~m~~~~rG~~lI~n~~~F~~--------~~l~~R~Gt~~D~~~l~~~~~~Lgf~V~~~~d~~~~~i~~~l~k~~~~  359 (455)
                      .+.|+|+++|||+||||||++|..        .+|++|.||++|+++|+++|++|||+|++++|||++||.+.|+     
T Consensus         7 ~~~Y~m~~~~rG~aLIInn~~F~~~~~~~~~~~~l~~R~Gt~~D~~~L~~~f~~LGF~V~~~~dlt~~em~~~l~-----   81 (271)
T 3h11_B            7 DKVYQMKSKPRGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFEELHFEIKPHDDCTVEQIYEILK-----   81 (271)
T ss_dssp             CCBCCCCSSSCCEEEEEECCCCSHHHHTCGGGTTCCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHH-----
T ss_pred             cccCCCCCCCCCEEEEEEchhcCcccccccccccCCCCCCcHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHH-----
Confidence            366999999999999999999985        2599999999999999999999999999999999999999998     


Q ss_pred             ccccccccccccCCCCcccEEEEEEeccCCCCCCCCCCCcHHhHHHHHHHHHhcC
Q psy15857        360 KSTVEKDADYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLG  414 (455)
Q Consensus       360 ~s~~~~~~~~Y~m~~~~~g~~lIin~~~F~~~~l~~R~Gs~~D~e~L~~~F~~Lg  414 (455)
                              +..+++|...+|++++.++|+..+.+++.+|..++++.|...|+.-.
T Consensus        82 --------~~~~~~h~~~d~~v~~ilSHG~~g~i~g~D~~~v~l~~I~~~f~~~~  128 (271)
T 3h11_B           82 --------IYQLMDHSNMDCFICCILSHGDKGIIYGTDGQEAPIYELTSQFTGLK  128 (271)
T ss_dssp             --------HHHHSCCTTCSCEEEEEESCEETTEEECTTSCEEEHHHHHGGGSTTT
T ss_pred             --------HHHHhcCCCCCEEEEEEEcCCcCCEEEecCCCeecHHHHHHHhhhcc
Confidence                    45567899999999999999998889999999899999999997543

>1nw9_B Caspase 9, apoptosis-related cysteine protease; XIAP, caspase inhibition, caspase activation, dimerization; 2.40A {Homo sapiens} SCOP: c.17.1.1 PDB: 1jxq_A* 2ar9_A

Probab=99.82  E-value=3.6e-21  Score=190.01  Aligned_cols=113  Identities=21%  Similarity=0.236  Sum_probs=102.8

Q ss_pred             ccccCCCCcceEEEEEeCCCCCCC-CCCCCCCChHhHHHHHHHHhhcCCEEEEecCccHHHHHHHhhcCCCccccccccc
Q psy15857        289 DYYRMDHKHRGLALIFNHEHFDSP-HLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVIQNAIDEGPVAKSTVEKDA  367 (455)
Q Consensus       289 ~~Y~m~~~~rG~~lI~n~~~F~~~-~l~~R~Gt~~D~~~l~~~~~~Lgf~V~~~~d~~~~~i~~~l~k~~~~~s~~~~~~  367 (455)
                      ..|+|+|+|||+||||||++|... +|+.|.||++|+++|+++|++|||+|++++|+|++||.+.|+             
T Consensus        12 ~~Y~m~~~~rg~aLIInn~~f~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~V~~~~dlt~~em~~~l~-------------   78 (277)
T 1nw9_B           12 LAYILSMEPCGHCLIINNVNFCRESGLRTRTGSNIDCEKLRRRFSSLHFMVEVKGDLTAKKMVLALL-------------   78 (277)
T ss_dssp             TBCCCCCSSCEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTEEEEEEESCCHHHHHHHHH-------------
T ss_pred             ceeeCCCCcccEEEEEeCcccCCCCCCCCCCCcHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHH-------------
Confidence            579999999999999999999853 799999999999999999999999999999999999999998             


Q ss_pred             ccccCCCCcccEEEEEEeccCCC-------CCCCCCCCcHHhHHHHHHHHHhcC
Q psy15857        368 DYYRMDHKHRGLALIFNHEHFDS-------PHLKSRAGTGADFENLYTTLVNLG  414 (455)
Q Consensus       368 ~~Y~m~~~~~g~~lIin~~~F~~-------~~l~~R~Gs~~D~e~L~~~F~~Lg  414 (455)
                      +..+.+|...+|++++.++|+..       +.++..+|..++++.|...|+.-.
T Consensus        79 ~~~~~~h~~~D~~vv~ilSHG~~~~~~~~~g~iy~~D~~~v~l~~i~~~f~~~~  132 (277)
T 1nw9_B           79 ELARQDHGALDCCVVVILSHGCQASHLQFPGAVYGTDGCPVSVEKIVNIFNGTS  132 (277)
T ss_dssp             HHHHSCCTTCSEEEEEEEEEEECCCCSSSCCEEECTTSCEEEHHHHHHTTCTTT
T ss_pred             HHHHhhcccCCeEEEEEeCCCCccccccCCCcEEecCCceeeHHHHHHHhcccC
Confidence            45567888899999999999987       677888988899999999997543

>4ehd_A Caspase-3; caspase, apoptosis, allosteric inhibition; 1.58A {Homo sapiens} PDB: 4ehk_A 4ehf_A 4ehn_A 1cp3_A 4ehh_A 4eha_A 4ehl_A 1i3o_A

Probab=99.82  E-value=3.8e-21  Score=189.75  Aligned_cols=113  Identities=25%  Similarity=0.338  Sum_probs=103.3

Q ss_pred             cccccCCCCcceEEEEEeCCCCCC-CCCCCCCCChHhHHHHHHHHhhcCCEEEEecCccHHHHHHHhhcCCCcccccccc
Q psy15857        288 ADYYRMDHKHRGLALIFNHEHFDS-PHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVIQNAIDEGPVAKSTVEKD  366 (455)
Q Consensus       288 ~~~Y~m~~~~rG~~lI~n~~~F~~-~~l~~R~Gt~~D~~~l~~~~~~Lgf~V~~~~d~~~~~i~~~l~k~~~~~s~~~~~  366 (455)
                      .+.|+|+|+|||+||||||++|.. ..|++|.||++|+++|+++|++|||+|++++|||++||.+.|+            
T Consensus        34 ~~~Y~m~~~~rg~aLIInN~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LGF~V~~~~dlt~~em~~~l~------------  101 (277)
T 4ehd_A           34 DNSYKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEIVELMR------------  101 (277)
T ss_dssp             CCBCCCCSSEEEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHH------------
T ss_pred             cccccCCCCCCCEEEEEEchhcCCcCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHH------------
Confidence            467999999999999999999985 3799999999999999999999999999999999999999998            


Q ss_pred             cccccCCCCcccEEEEEEeccCCCCCCCCCCCcHHhHHHHHHHHHhcC
Q psy15857        367 ADYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLG  414 (455)
Q Consensus       367 ~~~Y~m~~~~~g~~lIin~~~F~~~~l~~R~Gs~~D~e~L~~~F~~Lg  414 (455)
                       +..+++|...+|++++.++|+..+.+++.+| .++++.|...|+.-.
T Consensus       102 -~f~~~dh~~~d~~vv~ilSHG~~g~i~g~D~-~v~l~~I~~~f~~~~  147 (277)
T 4ehd_A          102 -DVSKEDHSKRSSFVCVLLSHGEEGIIFGTNG-PVDLKKITNFFRGDR  147 (277)
T ss_dssp             -HHHTSCCTTEEEEEEEEESCEETTEEEETTE-EEEHHHHHHTTSTTT
T ss_pred             -HHHhhcccCCCEEEEEEEcCCCCCEEEEeCC-cEeHHHHHHHhhhcc
Confidence             4556789999999999999999888888998 499999999997544

>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ; 1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A* 1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A* 2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A* 3d6h_A* 2hbz_A* 2hbr_A* ...

Probab=99.82  E-value=1.2e-20  Score=174.73  Aligned_cols=131  Identities=19%  Similarity=0.255  Sum_probs=108.9

Q ss_pred             cccccccCccccccCCCCc--ceEEEEEeCCCCCCCCCCCCCCChHhHHHHHHHHhhcCCEEEEecCccHHHHHHHhhcC
Q psy15857        279 VAKSTVEKDADYYRMDHKH--RGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVIQNAIDEG  356 (455)
Q Consensus       279 ~a~~~~~~~~~~Y~m~~~~--rG~~lI~n~~~F~~~~l~~R~Gt~~D~~~l~~~~~~Lgf~V~~~~d~~~~~i~~~l~k~  356 (455)
                      .++|+.++.++.|+|++++  ||+||||||++|.  .++.|.||++|+++|.++|++|||+|+++.|+|++||.+.|++ 
T Consensus        22 ~~~~~~~~~~~~Y~m~~~~~~~g~ALIInn~~f~--~~~~R~G~~~Da~~L~~~f~~LgF~V~~~~dlt~~em~~~l~~-   98 (178)
T 2h54_A           22 AQRIWKQKSAEIYPIMDKSSRTRLALIICNEEFD--SIPRRTGAEVDITGMTMLLQNLGYSVDVKKNLTASDMTTELEA-   98 (178)
T ss_dssp             HHHHC---CCSBCCCCCTTTCCCEEEEEECCCCS--SSCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHH-
T ss_pred             hhhccccCcccccCCCCCCCcCCEEEEEehhhcC--CCccCCCCHHHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHH-
Confidence            4677888888999999987  9999999999997  6999999999999999999999999999999999999999983 


Q ss_pred             CCcccccccccccccCCCCcccEEEEEEeccCCCCCCCCCCCc-----HHhHHHHHHHHHhcCCeEEEecCCC
Q psy15857        357 PVAKSTVEKDADYYRMDHKHRGLALIFNHEHFDSPHLKSRAGT-----GADFENLYTTLVNLGFVVKPYHDPE  424 (455)
Q Consensus       357 ~~~~s~~~~~~~~Y~m~~~~~g~~lIin~~~F~~~~l~~R~Gs-----~~D~e~L~~~F~~LgF~V~~~~dlt  424 (455)
                                 ..-+.+|...++++++-.+|+..+.+++.+|.     .++++.|...|+.-+ |+.+.++|+
T Consensus        99 -----------f~~~~d~~~~d~~v~~~lsHG~~g~i~g~D~~~~~~~~v~l~~I~~~f~~~~-CpsL~gKPK  159 (178)
T 2h54_A           99 -----------FAHRPEHKTSDSTFLVFMSHGIREGICGKKHSEQVPDILQLNAIFNMLNTKN-CPSLKDKPK  159 (178)
T ss_dssp             -----------HHTCGGGGGCSCEEEEEESCBCSSCEECTTCCSSSCCEECHHHHHHHHSTTT-CGGGTTSCE
T ss_pred             -----------HHhhhhcCCCCEEEEEEecCCCCCeEEeecCCcccCcEEEHHHHHHHHhhcC-ChhhcCCce
Confidence                       12345788889999999999998778888884     678899999998765 344444443

>2j32_A Caspase-3; Pro-caspase3, thiol protease, hydrolase, hydrolase-hydrolase inhibitor complex; 1.30A {Homo sapiens} PDB: 2j30_A 3h0e_A* 2j33_A 3pd1_A 2j31_A 3pcx_A 1nms_A* 1nmq_A* 3deh_A* 3dei_A* 3dej_A* 3dek_A* 3pd0_A 3itn_A 1qx3_A

Probab=99.79  E-value=3.4e-20  Score=180.53  Aligned_cols=110  Identities=25%  Similarity=0.364  Sum_probs=102.0

Q ss_pred             ccccCCCCcceEEEEEeCCCCCCC-CCCCCCCChHhHHHHHHHHhhcCCEEEEecCccHHHHHHHhhcCCCccccccccc
Q psy15857        289 DYYRMDHKHRGLALIFNHEHFDSP-HLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVIQNAIDEGPVAKSTVEKDA  367 (455)
Q Consensus       289 ~~Y~m~~~~rG~~lI~n~~~F~~~-~l~~R~Gt~~D~~~l~~~~~~Lgf~V~~~~d~~~~~i~~~l~k~~~~~s~~~~~~  367 (455)
                      +.|+|+|++||+||||||++|... +|+.|.||++|+++|.++|++|||+|+++.|+|++||.+.|+             
T Consensus         7 ~~Y~m~~~~rg~aLIInn~~f~~~~~l~~r~g~~~D~~~l~~~f~~LgF~V~~~~dlt~~em~~~l~-------------   73 (250)
T 2j32_A            7 NSYKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEIVELMR-------------   73 (250)
T ss_dssp             CBCCCCSSEEEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHH-------------
T ss_pred             ccccCCCCCccEEEEEechhcCCCCCCcCCCCCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHH-------------
Confidence            569999999999999999999863 699999999999999999999999999999999999999998             


Q ss_pred             ccccCCCCcccEEEEEEeccCCCCCCCCCCCcHHhHHHHHHHHHh
Q psy15857        368 DYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVN  412 (455)
Q Consensus       368 ~~Y~m~~~~~g~~lIin~~~F~~~~l~~R~Gs~~D~e~L~~~F~~  412 (455)
                      +...++|...+|++++-.+|+..+.+++.+| .++++.|.+.|+.
T Consensus        74 ~~~~~~~~~~d~~v~~~lsHG~~g~i~~~D~-~v~l~~i~~~f~~  117 (250)
T 2j32_A           74 DVSKEDHSKRSSFVCVLLSHGEEGIIFGTNG-PVDLKKITNFFRG  117 (250)
T ss_dssp             HHHTSCCTTEEEEEEEEESCEETTEEEETTE-EEEHHHHHHTTST
T ss_pred             HHHHhhccCCCEEEEEECCCCCCCeEEecCC-cEEHHHHHHHhcc
Confidence            5566788999999999999999888888888 7999999999976

>1f1j_A Caspase-7 protease; caspase-7, cysteine protease, hydrolase, apoptosis, hydrolas hydrolase inhibitor complex; 2.35A {Homo sapiens} SCOP: c.17.1.1 PDB: 1kmc_A 3r5k_A 1i4o_A 1gqf_A 3h1p_A 1shj_A* 1k86_A 1k88_A 1shl_A*

Probab=99.79  E-value=4e-20  Score=184.76  Aligned_cols=113  Identities=22%  Similarity=0.315  Sum_probs=102.1

Q ss_pred             cccccCCCCcceEEEEEeCCCCCCC-CCCCCCCChHhHHHHHHHHhhcCCEEEEecCccHHHHHHHhhcCCCcccccccc
Q psy15857        288 ADYYRMDHKHRGLALIFNHEHFDSP-HLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVIQNAIDEGPVAKSTVEKD  366 (455)
Q Consensus       288 ~~~Y~m~~~~rG~~lI~n~~~F~~~-~l~~R~Gt~~D~~~l~~~~~~Lgf~V~~~~d~~~~~i~~~l~k~~~~~s~~~~~  366 (455)
                      ...|+|+|++||+||||||++|... .|+.|.||++|+++|.++|++|||+|+++.|+|+++|.+.|+            
T Consensus        59 ~~~Y~m~~~~rg~aLIInN~~f~~~~~L~~R~G~~~Da~~L~~~f~~LGF~V~~~~dlt~~em~~~l~------------  126 (305)
T 1f1j_A           59 TYQYNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVIVYNDCSCAKMQDLLK------------  126 (305)
T ss_dssp             -CBCCCCSSEEEEEEEEECCCCCTTTTCCCCTTHHHHHHHHHHHHHHHTEEEEEEESCCHHHHHHHHH------------
T ss_pred             ccccccCCCCCCEEEEEechhcCCCccCccCCCcHHHHHHHHHHHHHCCCEEEEecCcCHHHHHHHHH------------
Confidence            5779999999999999999999864 799999999999999999999999999999999999999998            


Q ss_pred             cccccCCCCcccEEEEEEeccCCCCCCCCCCCcHHhHHHHHHHHHhcC
Q psy15857        367 ADYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLG  414 (455)
Q Consensus       367 ~~~Y~m~~~~~g~~lIin~~~F~~~~l~~R~Gs~~D~e~L~~~F~~Lg  414 (455)
                       ...+.+|...+|++++-.+|+..+.+++.+| .++++.|...|+...
T Consensus       127 -~~~~~~h~~~d~~vv~ilsHG~~~~i~g~D~-~v~l~~I~~~f~~~~  172 (305)
T 1f1j_A          127 -KASEEDHTNAACFACILLSHGEENVIYGKDG-VTPIKDLTAHFRGDR  172 (305)
T ss_dssp             -HHHHSCGGGEEEEEEEEESCEETTEEECSSS-EEEHHHHHHTTSTTT
T ss_pred             -HHHHhhcCCCCEEEEEEecCCCCCeEEecCC-eEEHHHHHHHhhhcc
Confidence             4566788889999999999998878888887 588999999987544

>2fp3_A Caspase NC; apoptosis, initiator caspase activation, dimerization, active site conformation, hydrolysis/apoptosis complex; 2.50A {Drosophila melanogaster}

Probab=99.79  E-value=4.1e-20  Score=185.61  Aligned_cols=115  Identities=17%  Similarity=0.260  Sum_probs=104.1

Q ss_pred             cCccccccCCCC-cceEEEEEeCCCCCCCCCCCCCCChHhHHHHHHHHhhcCCEEEEecCccHHHHHHHhhcCCCccccc
Q psy15857        285 EKDADYYRMDHK-HRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVIQNAIDEGPVAKSTV  363 (455)
Q Consensus       285 ~~~~~~Y~m~~~-~rG~~lI~n~~~F~~~~l~~R~Gt~~D~~~l~~~~~~Lgf~V~~~~d~~~~~i~~~l~k~~~~~s~~  363 (455)
                      ++..+.|+|+++ +||+||||||++|...+ +.|.||++|+++|+++|++|||+|++++|+|++||.+.|+         
T Consensus        47 ~~~~~~Y~m~~~~~rg~aLIInN~~F~~~~-~~R~Gt~~D~~~L~~~f~~LGF~V~~~~dlt~~em~~~l~---------  116 (316)
T 2fp3_A           47 SAILGTYKMQSRFNRGVLLMVNIMDYPDQN-RRRIGAEKDSKSLIHLFQELNFTIFPYGNVNQDQFFKLLT---------  116 (316)
T ss_dssp             CCSSCBCCCCCSSCSEEEEEEECCCCSSTT-SCCTTHHHHHHHHHHHHHHTTEEEEEECSCCHHHHHHHHH---------
T ss_pred             CCccccccCCCCCCCcEEEEEeCcccCCCC-CCCCCcHHHHHHHHHHHHHCCCEEEEccCCCHHHHHHHHH---------
Confidence            344577999999 99999999999998645 9999999999999999999999999999999999999998         


Q ss_pred             ccccccccCCCC-cccEEEEEEeccCCC----CCCCCCCCcHHhHHHHHHHHHhc
Q psy15857        364 EKDADYYRMDHK-HRGLALIFNHEHFDS----PHLKSRAGTGADFENLYTTLVNL  413 (455)
Q Consensus       364 ~~~~~~Y~m~~~-~~g~~lIin~~~F~~----~~l~~R~Gs~~D~e~L~~~F~~L  413 (455)
                          +..+.+|. ..+|++++.++|+..    +.+++.+|..++++.|...|+.-
T Consensus       117 ----~f~~~~h~~~~D~~vv~ilSHG~~~~g~g~i~g~D~~~v~l~~I~~~f~~~  167 (316)
T 2fp3_A          117 ----MVTSSSYVQNTECFVMVLMTHGNSVEGKEKVEFRDGSVVDMQKIKDHFQTA  167 (316)
T ss_dssp             ----HHHTSHHHHTCSCEEEEEESCEECCTTCCEEECTTSCEEEHHHHHHTTSTT
T ss_pred             ----HHHHHhhcCCCCEEEEEEccCCCccCCCCEEEeecCcEEeHHHHHHHhccc
Confidence                45567887 889999999999987    78899999989999999999764

>3e4c_A Caspase-1; zymogen, inflammasome, ICE, IL-1B, innate immunity, apoptosis, hydrolase, protease protease; 2.05A {Homo sapiens}

Probab=99.72  E-value=2.3e-18  Score=171.84  Aligned_cols=115  Identities=21%  Similarity=0.288  Sum_probs=101.5

Q ss_pred             ccCccccccCCCCc--ceEEEEEeCCCCCCCCCCCCCCChHhHHHHHHHHhhcCCEEEEecCccHHHHHHHhhcCCCccc
Q psy15857        284 VEKDADYYRMDHKH--RGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVIQNAIDEGPVAKS  361 (455)
Q Consensus       284 ~~~~~~~Y~m~~~~--rG~~lI~n~~~F~~~~l~~R~Gt~~D~~~l~~~~~~Lgf~V~~~~d~~~~~i~~~l~k~~~~~s  361 (455)
                      .++.++.|+|.+++  +|+||||||++|.  .|+.|.||++|+++|.++|++|||+|++++|||++||.+.|++      
T Consensus        44 ~~~~~e~Y~m~~~~~~~r~aLII~N~~f~--~l~~R~G~~~Da~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~------  115 (302)
T 3e4c_A           44 KQKSAEIYPIMDKSSRTRLALIICNEEFD--SIPRRTGAEVDITGMTMLLQNLGYSVDVKKNLTASDMTTELEA------  115 (302)
T ss_dssp             HHHGGGBCCCCCTTTCCCEEEEEECCSCS--SSCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHH------
T ss_pred             HhccccccccCCCCCCccEEEEEECcCCC--CCCCCCCcHHHHHHHHHHHHHCCCEEEEeeCCCHHHHHHHHHH------
Confidence            34667889999997  7999999999997  6999999999999999999999999999999999999999983      


Q ss_pred             ccccccccccCCCCcccEEEEEEeccCCCCCCCCCCC-----cHHhHHHHHHHHHh
Q psy15857        362 TVEKDADYYRMDHKHRGLALIFNHEHFDSPHLKSRAG-----TGADFENLYTTLVN  412 (455)
Q Consensus       362 ~~~~~~~~Y~m~~~~~g~~lIin~~~F~~~~l~~R~G-----s~~D~e~L~~~F~~  412 (455)
                            ...+.+|...++++++..+|+..+.+++.++     ..++++.|...|+.
T Consensus       116 ------f~~~~dh~~~d~~vv~~lsHG~~~~i~g~D~~~~~~~~v~l~~I~~~F~~  165 (302)
T 3e4c_A          116 ------FAHRPEHKTSDSTFLVFMSHGIREGICGKKHSEQVPDILQLNAIFNMLNT  165 (302)
T ss_dssp             ------HHTCGGGGGCSCEEEEEEEEEETTEEECTTCCSSSCCEECHHHHHHHTST
T ss_pred             ------HHhhhccCCCCEEEEEEeccCcCCeEEeecccccCCcEEEHHHHHHHHhh
Confidence                  2234588888999999999998877788876     56899999999976

>3h11_A CAsp8 and FADD-like apoptosis regulator; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} PDB: 3h13_A

Probab=99.70  E-value=3.3e-18  Score=168.33  Aligned_cols=109  Identities=17%  Similarity=0.200  Sum_probs=94.2

Q ss_pred             ccccccCccccccCCCCcceEEEEEeCCCCCCCCCCCCCCChHhHHHHHHHHhhcCCEEEEecCccHHHHHHHhhcCCCc
Q psy15857        280 AKSTVEKDADYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVIQNAIDEGPVA  359 (455)
Q Consensus       280 a~~~~~~~~~~Y~m~~~~rG~~lI~n~~~F~~~~l~~R~Gt~~D~~~l~~~~~~Lgf~V~~~~d~~~~~i~~~l~k~~~~  359 (455)
                      |-+|.++.++.|+|+|+|||+||||||..             +|+++|+++|++|||+|++|+|||++||.+.|+     
T Consensus        25 ~~~~~~~~~~~Y~m~~~~rG~~LIinn~~-------------~D~~~L~~~f~~LgF~V~~~~dlt~~em~~~l~-----   86 (272)
T 3h11_A           25 AFLPQSIPEERYKMKSKPLGICLIIDCIG-------------NETELLRDTFTSLGYEVQKFLHLSMHGISQILG-----   86 (272)
T ss_dssp             ----CCSSSCBCCCCCSSSEEEEEEESSC-------------CCCSHHHHHHHHHTEEEEEEESCBHHHHHHHHH-----
T ss_pred             CCCCCCCccccCCCCCCcceEEEEECCch-------------HHHHHHHHHHHHCCCEEEEeeCCCHHHHHHHHH-----
Confidence            55667777889999999999999999953             588999999999999999999999999999998     


Q ss_pred             cccccccccccc-CCCCcccEEEEEEeccCCCCCCCCCCCc--HHhHHHHHHHHHhcC
Q psy15857        360 KSTVEKDADYYR-MDHKHRGLALIFNHEHFDSPHLKSRAGT--GADFENLYTTLVNLG  414 (455)
Q Consensus       360 ~s~~~~~~~~Y~-m~~~~~g~~lIin~~~F~~~~l~~R~Gs--~~D~e~L~~~F~~Lg  414 (455)
                              +... .+|...+|++++.++|+..+.+++.+|.  .++++.|.+.|.+-.
T Consensus        87 --------~~~~~~dh~~~d~~v~~ilSHG~~g~i~g~D~~~~~v~l~~i~~~f~~~~  136 (272)
T 3h11_A           87 --------QFACMPEHRDYDSFVCVLVSRGGSQSVYGVDQTHSGLPLHHIRRMFMGDS  136 (272)
T ss_dssp             --------HHHTCGGGGGCSEEEEEEEEEEETTEECBTSCCSSCEEHHHHHHHHSTTT
T ss_pred             --------HHHhccccCCCCEEEEEEEcCCCCCeEEEEcCCcceEeHHHHHHHhcccc
Confidence                    4444 4889999999999999998889999998  599999999997643

>3bij_A Uncharacterized protein GSU0716; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.50A {Geobacter sulfurreducens pca}

Probab=99.43  E-value=4e-13  Score=132.81  Aligned_cols=200  Identities=15%  Similarity=0.144  Sum_probs=140.5

Q ss_pred             ceeEEEEEeCCCCCC----CCCCCCCChHHhHHHHHHHHHhCCcEEEEec--CCCHHHHHHHHHHHHhhcCCCCceEEEE
Q psy15857         23 HRGLALIFNHEHFDS----PHLKSRAGTGADFENLYTTLVNLGFVVKPYH--DPEFKVIQNAIDEAAEQDYTDADCFVMA   96 (455)
Q Consensus        23 ~~G~aLIInN~~F~~----~~l~~R~Gs~~D~~~L~~~F~~LGF~V~~~~--nlt~~em~~~l~~~s~~d~~~~d~~vvv   96 (455)
                      ++.+||||.|..|..    ....+..|+.+|++.|+++|+++||.|.+..  ++|.+.|...|+.+.+. ....|.++++
T Consensus         2 ~~~~ALlIGi~~Y~~~~Y~~~~~~L~~~~nDa~~~~~~L~~~Gf~v~~l~~~~~t~~~i~~al~~l~~~-~~~~D~~~~y   80 (285)
T 3bij_A            2 PKGIALALGLNAVDPKHYGGWAGKLNACEADAEDMAAIAAERGFAVTTLMTKAATRAKVIDAIGKAAKA-LGKGDIFMLS   80 (285)
T ss_dssp             CCEEEEEEECSCCCTTTTTTCCCCCSSHHHHHHHHHHHHHHTTCEEEEEEGGGCCHHHHHHHHHHHHHH-CCTTCEEEEE
T ss_pred             CceEEEEEEeCCccccccCCCcccCCCCHHHHHHHHHHHHHcCCceEEecCCccCHHHHHHHHHHHHHh-CCCCCEEEEE
Confidence            578999999998652    2356789999999999999999999987665  47999999999999864 3445999999


Q ss_pred             EecCCCC-------------ceeeeeCCccChhhhHHhhccccccccCCCceEEEEecccCCccCCCceeee--------
Q psy15857         97 VLTHGED-------------GILHAKDVPYKPKNLWSKFTADNCLTLAGKPKLFFIQACQGDKLDAGVTIRT--------  155 (455)
Q Consensus        97 ilSHG~~-------------g~I~g~D~~v~~~~I~~~F~~~~c~~L~gKPKlFfiQACRG~~~d~gv~~~~--------  155 (455)
                      |.+||.+             +.++..|+.+.-++|...+.  .++  .++.+++|++||+......+.+...        
T Consensus        81 fSGHG~~~~~~~g~e~dg~~~~l~p~D~~i~~~~l~~~l~--~l~--~~~~~~vilD~C~SG~~~~~~p~~~~~~~~~~~  156 (285)
T 3bij_A           81 YSGHGGQVPDTSNDEPDGVDETWCLFDGELIDDELYALLG--KFA--AGVRVLVFSDSCHSGTVVKMAYYNGTTAARSAG  156 (285)
T ss_dssp             EESCEEEEECTTSCCTTCEEEEEECSSSEEEHHHHHHHHT--TSC--SSCEEEEEEECCCCCCHHHHHHTTC--------
T ss_pred             EcCCcccccCCCCCccCCCcceEEecCCCccHHHHHHHHH--hcc--CCCeEEEEEecCCCCcccccccccccccccccc
Confidence            9999962             36788898877778888885  333  3678899999999643221100000        


Q ss_pred             ----c--cCCCCC----------------------CCcCCCCCCCEEEEEccCCCCccccCc---hhHHHHHHHHhHhH-
Q psy15857        156 ----Q--VDGHPS----------------------NTYSIPLHADFLMAYSTISDSPMFGQR---FGLKDKCSKVVSKT-  203 (455)
Q Consensus       156 ----~--~d~~~~----------------------~~~~iP~~aD~Li~yST~pG~vS~R~~---~fIq~Lc~~~~~~~-  203 (455)
                          +  ....+.                      .....+..+++++.+|+.++.+|+...   .|..+|++.+.... 
T Consensus       157 ~~~g~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~lsa~~~~q~A~e~~~~G~FT~aLl~~L~~~~~  236 (285)
T 3bij_A          157 PDEGEIRYRAMPQSVAMRTYRANREFYDTIQQKTKKVDLADVKASILLISGCQDNQLSQDGAFNGAFTGQLLRVWKNGLY  236 (285)
T ss_dssp             -----CEESBCCHHHHHHHHHHTHHHHHHHHHHCCCCCTTTCSSEEEEEESSCTTSCCEECSSSCHHHHHHHHHHGGGTC
T ss_pred             ccccccceeecCchhhhhhhhcchhHHHHHhhhcccccccCCCCCEEEEEeCCCCccccccccCCHHHHHHHHHHhhCCC
Confidence                0  000000                      000123457899999999999998754   58999998776542 


Q ss_pred             ---HHHhhhcccCCCCccccccccccccCCC
Q psy15857        204 ---YQVMSSNVDTSNGECQTDGHESHTNGSA  231 (455)
Q Consensus       204 ---~~~m~~~~~~~~~e~~~~~~~~~~~~s~  231 (455)
                         +..|.++++..    +...|.||..+++
T Consensus       237 ~~s~~~l~~~v~~~----~~~~Q~P~~~~~g  263 (285)
T 3bij_A          237 KGSYRSFHKAIVRR----MPPDQTPNFFTAG  263 (285)
T ss_dssp             CSCHHHHHHHHHHH----SCTTCCCEEEEEE
T ss_pred             CcCHHHHHHHHHHh----cCCCCCcceeCCC
Confidence               44455555532    2366788876653

>1sc3_B Interleukin-1 beta convertase; malonate-bound caspase-1, hydrolase; 1.80A {Homo sapiens} SCOP: c.17.1.1 PDB: 1ice_B 1bmq_B* 1rwm_B* 1rwk_B* 1rwo_B* 1rwp_B* 1rwv_B* 1rww_B* 1rwn_B* 1sc1_B 1rwx_B 1sc4_B 2h4y_B* 2hbq_B* 2hbr_B* 3ns7_B* 3d6f_B* 3d6h_B* 3d6m_B* 2h4w_B* ...

Probab=99.14  E-value=2.3e-11  Score=99.81  Aligned_cols=51  Identities=12%  Similarity=0.070  Sum_probs=40.4

Q ss_pred             cCCCCCCCEEEEEccCCCCccccCc----hhHHHHHHHHhHhH----HHHhhhcccCCC
Q psy15857        165 YSIPLHADFLMAYSTISDSPMFGQR----FGLKDKCSKVVSKT----YQVMSSNVDTSN  215 (455)
Q Consensus       165 ~~iP~~aD~Li~yST~pG~vS~R~~----~fIq~Lc~~~~~~~----~~~m~~~~~~~~  215 (455)
                      .++|.+||||++|||+|||+||||+    ||||+||+.|.+..    ..-|..+|...+
T Consensus         3 ~~ip~~aDfL~~yST~pG~~S~R~~~~GSwfIq~Lc~~l~~~~~~~dl~~il~~V~~~v   61 (88)
T 1sc3_B            3 KKAHIEKDFIAFCSSTPDNVSWRHPTMGSVFIGRLIEHMQEYACSCDVEEIFRKVRFSF   61 (88)
T ss_dssp             CCCCSSCSEEEEESSCTTBCCCEETTTEEHHHHHHHHHHHHHTTTSCHHHHHHHHHHHT
T ss_pred             cccCCCCCEEEEEeCCCCCEeeEcCCCCCHHHHHHHHHHHHhCCcCcHHHHHHHHHHHH
Confidence            5799999999999999999999977    89999999887643    233444554443

>1pyo_B Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 2p2c_B 3r5j_B 3r6g_B 3r7b_B 3r7n_B 3r7s_B 3r6l_B

Probab=99.03  E-value=5.7e-11  Score=100.62  Aligned_cols=40  Identities=8%  Similarity=0.286  Sum_probs=36.5

Q ss_pred             CCcCCCCCCCEEEEEccCCCCccccCc----hhHHHHHHHHhHh
Q psy15857        163 NTYSIPLHADFLMAYSTISDSPMFGQR----FGLKDKCSKVVSK  202 (455)
Q Consensus       163 ~~~~iP~~aD~Li~yST~pG~vS~R~~----~fIq~Lc~~~~~~  202 (455)
                      ....+|.+||||++|||+|||+||||+    ||||+||+.|.+.
T Consensus         7 ~~~~iP~~aDfL~~yST~pG~~S~R~~~~GSwFIq~Lc~~l~~~   50 (105)
T 1pyo_B            7 PKMRLPTRSDMICGYACLKGTAAMRNTKRGSWYIEALAQVFSER   50 (105)
T ss_dssp             CCCEECSSCSEEEEESSCTTBCCEEETTTEEHHHHHHHHHHHHH
T ss_pred             cccCcCCCCCEEEEEeCCCCcEEEecCCCCCHHHHHHHHHHHHH
Confidence            457899999999999999999999986    8999999988774

>2ql9_B Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_B* 2ql5_B* 2qlb_B* 2qlf_B 2qlj_B* 3edr_B 3ibc_B 3ibf_B 1i51_B

Probab=99.00  E-value=1.5e-10  Score=96.60  Aligned_cols=40  Identities=33%  Similarity=0.550  Sum_probs=34.7

Q ss_pred             CCcCCCCCCCEEEEEccCCCCccccCc----hhHHHHHHHHhHh
Q psy15857        163 NTYSIPLHADFLMAYSTISDSPMFGQR----FGLKDKCSKVVSK  202 (455)
Q Consensus       163 ~~~~iP~~aD~Li~yST~pG~vS~R~~----~fIq~Lc~~~~~~  202 (455)
                      ...++|.+||||++|||+|||+||||+    ||||+||+.|.+.
T Consensus         3 ~~~~iP~~aDfL~~yST~pG~~S~R~~~~GSwfIq~Lc~~l~~~   46 (97)
T 2ql9_B            3 PRYKIPVEADFLFAYSTVPGYYSWRSPGRGSWFVQALCSILEEH   46 (97)
T ss_dssp             ---CBCTTTTEEEEESSCTTBCCEEETTTEEHHHHHHHHHHHHH
T ss_pred             CCcccCCCCCEEEEEeCCCCcEeeecCCCCCeeHHHHHHHHHHh
Confidence            356899999999999999999999986    8999999988774

>2dko_B Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 2c2k_B* 2c2m_B* 2c2o_B* 2c1e_B* 2cdr_B* 2cnk_B* 2cnl_B* 2cnn_B* 2cno_B* 2cjy_B 1pau_B 1re1_B* 1rhk_B* 1rhm_B* 1rhq_B* 1rhr_B* 1rhu_B* 1rhj_B* 1i3o_B* 3edq_B ...

Probab=98.99  E-value=2e-10  Score=96.90  Aligned_cols=40  Identities=28%  Similarity=0.423  Sum_probs=36.6

Q ss_pred             CCcCCCCCCCEEEEEccCCCCccccCc----hhHHHHHHHHhHh
Q psy15857        163 NTYSIPLHADFLMAYSTISDSPMFGQR----FGLKDKCSKVVSK  202 (455)
Q Consensus       163 ~~~~iP~~aD~Li~yST~pG~vS~R~~----~fIq~Lc~~~~~~  202 (455)
                      .+.++|.+||||++|||+|||+||||+    ||||+||+.|.+.
T Consensus         9 ~~~~iP~~aDfL~~yST~pG~vS~R~~~~GSwfIq~Lc~~l~~~   52 (103)
T 2dko_B            9 ACHKIPVEADFLYAYSTAPGYYSWRNSKDGSWFIQSLCAMLKQY   52 (103)
T ss_dssp             SSCCCCTTTTEEEEESSCTTBCCEEETTTEEHHHHHHHHHHHHH
T ss_pred             cccccCCCCCEEEEEeCCCCcEeEEcCCCCCeeHHHHHHHHHHh
Confidence            467899999999999999999999986    8999999988764

>1qtn_B Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_B* 3kjq_B* 2y1l_B 1f9e_B* 1qdu_B*

Probab=98.99  E-value=2.2e-10  Score=95.32  Aligned_cols=39  Identities=23%  Similarity=0.474  Sum_probs=35.8

Q ss_pred             CcCCCCCCCEEEEEccCCCCccccCc----hhHHHHHHHHhHh
Q psy15857        164 TYSIPLHADFLMAYSTISDSPMFGQR----FGLKDKCSKVVSK  202 (455)
Q Consensus       164 ~~~iP~~aD~Li~yST~pG~vS~R~~----~fIq~Lc~~~~~~  202 (455)
                      ..++|.+||||++|||+|||+||||+    ||||+||+.|.+.
T Consensus         6 ~~~iP~~aDfL~~ysT~pG~~S~R~~~~GSwfIq~Lc~~l~~~   48 (95)
T 1qtn_B            6 TRYIPDEADFLLGMATVNNCVSYRNPAEGTWYIQSLCQSLRER   48 (95)
T ss_dssp             CCCCCTTCSEEEEESSCTTBCCEEETTTEEHHHHHHHHHHHHH
T ss_pred             ccccCCCCCEEEEEeCCCCcEEEecCCCCcHHHHHHHHHHHHh
Confidence            56899999999999999999999986    8999999988773

>3rjm_B Caspase-2; caspase-2, caspase, hydrolase-hydrolase inhibitor; HET: 3PX; 2.55A {Homo sapiens}

Probab=98.97  E-value=2.6e-10  Score=98.37  Aligned_cols=54  Identities=9%  Similarity=0.204  Sum_probs=42.5

Q ss_pred             CCcCCCCCCCEEEEEccCCCCccccCc----hhHHHHHHHHhHhH----HHHhhhcccCCCC
Q psy15857        163 NTYSIPLHADFLMAYSTISDSPMFGQR----FGLKDKCSKVVSKT----YQVMSSNVDTSNG  216 (455)
Q Consensus       163 ~~~~iP~~aD~Li~yST~pG~vS~R~~----~fIq~Lc~~~~~~~----~~~m~~~~~~~~~  216 (455)
                      ...+||.+||||++|||+|||+|||++    ||||+||+.|.+..    ..-|..+|.+.+.
T Consensus         8 ~~~~iP~eADfL~~yST~pGyvS~R~~~~GSwFIQ~Lc~vl~~~~~~~dLl~ilT~Vn~~Va   69 (117)
T 3rjm_B            8 PKMRLPTRSDMICGYACLKGTAAMRNTKRGSWYIEALAQVFSERACDMHVADMLVKVNALIK   69 (117)
T ss_dssp             CCCCBCSSCSEEEEESSCTTCCCEEETTTEEHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred             cCccCCCccCEEEEEcCCCCeECeeecCCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence            467999999999999999999999986    89999999887653    2234444444443

>2xzd_B Caspase-3; hydrolase-protein binding complex, de novo protein, apoptosi ankyrin repeat protein, ribosome display; 2.10A {Homo sapiens} PDB: 2xzt_B 2y0b_B

Probab=98.94  E-value=2.7e-10  Score=98.38  Aligned_cols=40  Identities=28%  Similarity=0.423  Sum_probs=36.0

Q ss_pred             CCcCCCCCCCEEEEEccCCCCccccCc----hhHHHHHHHHhHh
Q psy15857        163 NTYSIPLHADFLMAYSTISDSPMFGQR----FGLKDKCSKVVSK  202 (455)
Q Consensus       163 ~~~~iP~~aD~Li~yST~pG~vS~R~~----~fIq~Lc~~~~~~  202 (455)
                      ...+||.+||||++|||+|||+|||++    ||||+||+.|.+.
T Consensus         8 ~~~~iP~~aDfLi~yST~pG~vS~R~~~~GSwFIQ~Lc~vl~~~   51 (118)
T 2xzd_B            8 ACHKIPVEADFLYAYSTAPGYYSWRNSKDGSWFIQSLCAMLKQY   51 (118)
T ss_dssp             -CCEECTTTTEEEEESSCTTBCCCEETTTEEHHHHHHHHHHHHH
T ss_pred             cccccCCCCCEEEEEeCCCCCEeeEeCCCCCccHHHHHHHHHHh
Confidence            457899999999999999999999986    8999999988764

>4af8_A Metacaspase MCA2; hydrolase, cysteine peptidase, caspase/hemoglobin fold; 1.40A {Trypanosoma brucei} PDB: 4afp_A 4afv_A 4afr_A

Probab=98.82  E-value=1.2e-07  Score=96.52  Aligned_cols=161  Identities=11%  Similarity=0.074  Sum_probs=109.9

Q ss_pred             CCceeEEEEEeCCCCCCCCCCCCCChHHhHHHHHHHHHhCCcEE---EEec----------CCCHHHHHHHHHHHHhhcC
Q psy15857         21 HKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVV---KPYH----------DPEFKVIQNAIDEAAEQDY   87 (455)
Q Consensus        21 ~~~~G~aLIInN~~F~~~~l~~R~Gs~~D~~~L~~~F~~LGF~V---~~~~----------nlt~~em~~~l~~~s~~d~   87 (455)
                      ..++.+||+|.+.+|..  ..+..|+.+|++.|+++|+++||.+   .+..          ++|.+.|.+.|+.+.+. .
T Consensus        89 ~~grr~ALlIGIn~Y~~--~~~L~g~vnDA~~m~~~L~~~GF~~~~i~~L~D~~~~p~~~~~pTr~nI~~aL~~L~~~-a  165 (367)
T 4af8_A           89 PGQTVRALFIGINYYGT--SAALSGCCNDVKQMLATLQKRGLPINEAVILVDEDNFPGRTDQPTRDNIVRYMAWLVKD-A  165 (367)
T ss_dssp             TTCCEEEEEEECCCTTS--TTCCSSHHHHHHHHHHHHHHTTCCCSEEEEEECCTTCTTCCBCCCHHHHHHHHHHHHHT-C
T ss_pred             CCCCeEEEEEEeCCCCC--ccCCCCHHHHHHHHHHHHHHcCCCchheEEecccccccccccCCCHHHHHHHHHHHHHh-C
Confidence            35788999999998873  5677899999999999999999963   4443          58999999999999864 4


Q ss_pred             CCCceEEEEEecCCCC--c----------eeeeeC----CccChhhhHHhhccccccccCCCceEEEEecccCCc-cCCC
Q psy15857         88 TDADCFVMAVLTHGED--G----------ILHAKD----VPYKPKNLWSKFTADNCLTLAGKPKLFFIQACQGDK-LDAG  150 (455)
Q Consensus        88 ~~~d~~vvvilSHG~~--g----------~I~g~D----~~v~~~~I~~~F~~~~c~~L~gKPKlFfiQACRG~~-~d~g  150 (455)
                      ..-|.++++|.+||.+  +          .|++.|    +.|.-++|.+.+-.. .|  .++-.++|+++|-... .+..
T Consensus       166 ~pgD~l~fyFSGHG~q~~d~~de~dg~De~LvP~D~~~~g~I~ddeL~~lLv~~-l~--~g~~v~vIlD~ChSGt~~dlp  242 (367)
T 4af8_A          166 KPGDVLFFHYSGHGTQCKSRGDSDEKYDQCIAPVDFQKSGCIVDDDIHKLLFSR-LP--EKVRLTAVFDCGHSGSIMDLP  242 (367)
T ss_dssp             CTTCEEEEEEESCEEEECCC-----CCEEEECCTTHHHHCCEEHHHHHHHHTTT-CC--TTCEEEEEEECTTCCCCTTCS
T ss_pred             CCCCEEEEEEcCCcCccCCCCCCCCCcceEEEeecCCcCCCccHHHHHHHHHHh-cc--CCCEEEEEEeCCCCCcccccc
Confidence            4569999999999983  1          367777    346667888874321 11  3667799999998443 3322


Q ss_pred             ceeeec--cCCCC-CCC----cCCCCCCCEEEEEccCCCCcccc
Q psy15857        151 VTIRTQ--VDGHP-SNT----YSIPLHADFLMAYSTISDSPMFG  187 (455)
Q Consensus       151 v~~~~~--~d~~~-~~~----~~iP~~aD~Li~yST~pG~vS~R  187 (455)
                      ......  .++.. ...    ..-+..+|+++.-|+.++..|..
T Consensus       243 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~vi~~Sac~d~QtSad  286 (367)
T 4af8_A          243 FTYVCSGGEQASGTPHMKRIREGNDVLGDVMMISGCADEQTSAD  286 (367)
T ss_dssp             EEEECCTTCCTTSCCCCEECSSCCCCCSEEEEEEEECCCSCCCC
T ss_pred             cccccccccccccchhhhhhccCCCCCCCEEEEEecCCCCchhh
Confidence            211100  11100 000    11134578888888888888876

>3uoa_B Mucosa-associated lymphoid tissue lymphoma transl protein 1; paracaspase, lymphoma, NF-KB signalling, caspase fold, immun fold, hydrolase-hydrolase inhibitor complex; 1.75A {Homo sapiens} PDB: 3uo8_B 3v55_A 3v4l_A* 3v4o_A*

Probab=98.62  E-value=9.9e-08  Score=97.88  Aligned_cols=106  Identities=16%  Similarity=0.159  Sum_probs=81.3

Q ss_pred             CcceEEEEEeCCCCCCCCCCCCCCChHhHHHHHHHHhhcCCEEEEecCccHHHHHHHhhcCCCcccccccccccccCCCC
Q psy15857        296 KHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVIQNAIDEGPVAKSTVEKDADYYRMDHK  375 (455)
Q Consensus       296 ~~rG~~lI~n~~~F~~~~l~~R~Gt~~D~~~l~~~~~~Lgf~V~~~~d~~~~~i~~~l~k~~~~~s~~~~~~~~Y~m~~~  375 (455)
                      ..|++||||+|.+|.  .++++.|+..|+++|.++|++|||+|.++.|+|+++|.+.|++             ..... .
T Consensus         3 A~~r~ALIIGn~~Y~--~~~~L~ga~~DA~~L~~~L~~lGF~V~~l~DlT~~eI~~aL~~-------------f~~~~-~   66 (390)
T 3uoa_B            3 AKDKVALLIGNMNYR--EHPKLKAPLVDVYELTNLLRQLDFKVVSLLDLTEYEMRNAVDE-------------FLLLL-D   66 (390)
T ss_dssp             BSCEEEEEEECCCCS--SSCCCSTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHH-------------HHHTC-C
T ss_pred             CCCCEEEEEEecCCC--CcccCCChHHHHHHHHHHHHHcCCeEEEeecCCHHHHHHHHHH-------------HHhhC-C
Confidence            468999999999997  4678999999999999999999999999999999999999983             33333 2


Q ss_pred             cccEEEEEEeccCCC--CC--CCC-------CCCcHHhHHHHHHHHHhcCCeE
Q psy15857        376 HRGLALIFNHEHFDS--PH--LKS-------RAGTGADFENLYTTLVNLGFVV  417 (455)
Q Consensus       376 ~~g~~lIin~~~F~~--~~--l~~-------R~Gs~~D~e~L~~~F~~LgF~V  417 (455)
                      +.+++++.-..|+..  +.  +.+       +.++-++.+.|...|+.+.=++
T Consensus        67 ~~D~~l~yfsGHG~~~~g~~yL~p~Da~~~~~~~~~isl~~Ll~~l~~~~~K~  119 (390)
T 3uoa_B           67 KGVYGLLYYAGHGYENFGNSFMVPVDAPNPYRSENCLCVQNILKLMQEKETGL  119 (390)
T ss_dssp             TTCEEEEEEESCEEEETTEEEECCTTCCSSCCGGGSEEHHHHHHHHHHTTCSE
T ss_pred             CCCEEEEEEecCccccCCcceEEecCCCccccccceeeHHHHHHHHHhcCCCc
Confidence            458888887788753  11  122       2334467788888887665443

>4f6o_A Metacaspase-1; rossmann fold, hydrolase; HET: DFH; 1.68A {Saccharomyces cerevisiae}

Probab=98.56  E-value=4.7e-07  Score=91.68  Aligned_cols=117  Identities=18%  Similarity=0.270  Sum_probs=89.5

Q ss_pred             CceeEEEEEeCCCCCCCCCCCCCChHHhHHHHHHHHHh-CCcE---EEEecC--------CCHHHHHHHHHHHHhhcCCC
Q psy15857         22 KHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVN-LGFV---VKPYHD--------PEFKVIQNAIDEAAEQDYTD   89 (455)
Q Consensus        22 ~~~G~aLIInN~~F~~~~l~~R~Gs~~D~~~L~~~F~~-LGF~---V~~~~n--------lt~~em~~~l~~~s~~d~~~   89 (455)
                      .++.+||+|.+..|.  ...+..|+.+|++.|+++|++ +||.   |.+..|        +|.+.|.+.|+.+.+. ...
T Consensus        51 ~grr~ALlIGIn~Y~--~~~~L~g~vnDA~~m~~~L~~~~Gf~~~~I~lLtd~~~~~~~~pTr~nI~~aL~~L~~~-a~p  127 (350)
T 4f6o_A           51 TGRRKALIIGINYIG--SKNQLRGCINDAHNIFNFLTNGYGYSSDDIVILTDDQNDLVRVPTRANMIRAMQWLVKD-AQP  127 (350)
T ss_dssp             CSCEEEEEEECCCTT--STTCCSSHHHHHHHHHHHHHHHSCCCGGGEEEEETTSSCGGGSCCHHHHHHHHHHHHTT-CCT
T ss_pred             CCCEEEEEEEeCCCC--CCCCCCCHHHHHHHHHHHHHHhcCCCccceeeecccccccccCCCHHHHHHHHHHHHHh-CCC
Confidence            478899999998775  466789999999999999987 7996   566655        8999999999999864 445


Q ss_pred             CceEEEEEecCCCC-------------ceeeeeC----CccChhhhHHhhccccccccCCCceE-EEEecccCC
Q psy15857         90 ADCFVMAVLTHGED-------------GILHAKD----VPYKPKNLWSKFTADNCLTLAGKPKL-FFIQACQGD  145 (455)
Q Consensus        90 ~d~~vvvilSHG~~-------------g~I~g~D----~~v~~~~I~~~F~~~~c~~L~gKPKl-FfiQACRG~  145 (455)
                      -|.++++|.+||.+             ..|+..|    +.|.-++|...+..    .|...-+| +|+++|-..
T Consensus       128 gD~llfYFSGHG~q~~d~~gdE~dG~De~lvP~D~~~~g~I~ddeL~~~L~~----~l~~g~~vt~IlD~ChSG  197 (350)
T 4f6o_A          128 NDSLFLHYSGHGGQTEDLDGDEEDGMDDVIYPVDFETQGPIIDDEMHDIMVK----PLQQGVRLTALFDSCHSG  197 (350)
T ss_dssp             TCEEEEEEESCEEEC-----------CEEECCTTHHHHCCEEHHHHHHHHTT----TCCTTCEEEEEECSSSCT
T ss_pred             CCEEEEEEcCCceeccCCCCCcccCCceEEEeccCCcCCcccHHHHHHHHHh----hcCCCCeEEEEEccCCCC
Confidence            69999999999973             1366777    34666678776642    13323354 999999743

>3bij_A Uncharacterized protein GSU0716; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.50A {Geobacter sulfurreducens pca}

Probab=95.56  E-value=0.047  Score=53.25  Aligned_cols=74  Identities=20%  Similarity=0.272  Sum_probs=60.6

Q ss_pred             cccEEEEEEeccCCC----CCCCCCCCcHHhHHHHHHHHHhcCCeEEEec--CCCHHHHHHHHHh-----cCCcEEEEEE
Q psy15857        376 HRGLALIFNHEHFDS----PHLKSRAGTGADFENLYTTLVNLGFVVKPYH--DPEFKVIQNAIDE-----GKDALIPSLF  444 (455)
Q Consensus       376 ~~g~~lIin~~~F~~----~~l~~R~Gs~~D~e~L~~~F~~LgF~V~~~~--dlt~~eI~~~l~~-----~~~~cfv~~i  444 (455)
                      ++..+|+|-+..|..    +....-.|+..|++.|.++|+.+||.|.+..  ++|.+.|...|+.     ...|.+++.+
T Consensus         2 ~~~~ALlIGi~~Y~~~~Y~~~~~~L~~~~nDa~~~~~~L~~~Gf~v~~l~~~~~t~~~i~~al~~l~~~~~~~D~~~~yf   81 (285)
T 3bij_A            2 PKGIALALGLNAVDPKHYGGWAGKLNACEADAEDMAAIAAERGFAVTTLMTKAATRAKVIDAIGKAAKALGKGDIFMLSY   81 (285)
T ss_dssp             CCEEEEEEECSCCCTTTTTTCCCCCSSHHHHHHHHHHHHHHTTCEEEEEEGGGCCHHHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred             CceEEEEEEeCCccccccCCCcccCCCCHHHHHHHHHHHHHcCCceEEecCCccCHHHHHHHHHHHHHhCCCCCEEEEEE
Confidence            356788888888653    2456778999999999999999999976553  5799999999887     5678899999


Q ss_pred             ecccC
Q psy15857        445 LPHSN  449 (455)
Q Consensus       445 lSHG~  449 (455)
                      ..||.
T Consensus        82 SGHG~   86 (285)
T 3bij_A           82 SGHGG   86 (285)
T ss_dssp             ESCEE
T ss_pred             cCCcc
Confidence            99995

>4f6o_A Metacaspase-1; rossmann fold, hydrolase; HET: DFH; 1.68A {Saccharomyces cerevisiae}

Probab=91.60  E-value=0.76  Score=46.23  Aligned_cols=73  Identities=19%  Similarity=0.216  Sum_probs=57.7

Q ss_pred             CcccEEEEEEeccCCCCCCCCCCCcHHhHHHHHHHHHh-cCCe---EEEecC--------CCHHHHHHHHHh-----cCC
Q psy15857        375 KHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVN-LGFV---VKPYHD--------PEFKVIQNAIDE-----GKD  437 (455)
Q Consensus       375 ~~~g~~lIin~~~F~~~~l~~R~Gs~~D~e~L~~~F~~-LgF~---V~~~~d--------lt~~eI~~~l~~-----~~~  437 (455)
                      ..+..+|+|-...+.  ....-.|+..|++.|.++|.. +||.   |.+..|        +|.+.|.+.|+.     ...
T Consensus        51 ~grr~ALlIGIn~Y~--~~~~L~g~vnDA~~m~~~L~~~~Gf~~~~I~lLtd~~~~~~~~pTr~nI~~aL~~L~~~a~pg  128 (350)
T 4f6o_A           51 TGRRKALIIGINYIG--SKNQLRGCINDAHNIFNFLTNGYGYSSDDIVILTDDQNDLVRVPTRANMIRAMQWLVKDAQPN  128 (350)
T ss_dssp             CSCEEEEEEECCCTT--STTCCSSHHHHHHHHHHHHHHHSCCCGGGEEEEETTSSCGGGSCCHHHHHHHHHHHHTTCCTT
T ss_pred             CCCEEEEEEEeCCCC--CCCCCCCHHHHHHHHHHHHHHhcCCCccceeeecccccccccCCCHHHHHHHHHHHHHhCCCC
Confidence            455677777776653  345678999999999999976 6996   445554        899999999987     467


Q ss_pred             cEEEEEEecccC
Q psy15857        438 ALIPSLFLPHSN  449 (455)
Q Consensus       438 ~cfv~~ilSHG~  449 (455)
                      |.+++.+.-||.
T Consensus       129 D~llfYFSGHG~  140 (350)
T 4f6o_A          129 DSLFLHYSGHGG  140 (350)
T ss_dssp             CEEEEEEESCEE
T ss_pred             CEEEEEEcCCce
Confidence            889999999996

>4af8_A Metacaspase MCA2; hydrolase, cysteine peptidase, caspase/hemoglobin fold; 1.40A {Trypanosoma brucei} PDB: 4afp_A 4afv_A 4afr_A

Probab=89.86  E-value=1.7  Score=44.06  Aligned_cols=73  Identities=14%  Similarity=0.137  Sum_probs=56.9

Q ss_pred             CcccEEEEEEeccCCCCCCCCCCCcHHhHHHHHHHHHhcCCeE---EEec----------CCCHHHHHHHHHh-----cC
Q psy15857        375 KHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVV---KPYH----------DPEFKVIQNAIDE-----GK  436 (455)
Q Consensus       375 ~~~g~~lIin~~~F~~~~l~~R~Gs~~D~e~L~~~F~~LgF~V---~~~~----------dlt~~eI~~~l~~-----~~  436 (455)
                      ..+..+|+|-...+..  ...-.|+..|++.+.++|+.+||.+   .+..          ++|.+.|.+.|+.     ..
T Consensus        90 ~grr~ALlIGIn~Y~~--~~~L~g~vnDA~~m~~~L~~~GF~~~~i~~L~D~~~~p~~~~~pTr~nI~~aL~~L~~~a~p  167 (367)
T 4af8_A           90 GQTVRALFIGINYYGT--SAALSGCCNDVKQMLATLQKRGLPINEAVILVDEDNFPGRTDQPTRDNIVRYMAWLVKDAKP  167 (367)
T ss_dssp             TCCEEEEEEECCCTTS--TTCCSSHHHHHHHHHHHHHHTTCCCSEEEEEECCTTCTTCCBCCCHHHHHHHHHHHHHTCCT
T ss_pred             CCCeEEEEEEeCCCCC--ccCCCCHHHHHHHHHHHHHHcCCCchheEEecccccccccccCCCHHHHHHHHHHHHHhCCC
Confidence            3455677776666642  3456699999999999999999964   3332          5899999999987     56


Q ss_pred             CcEEEEEEecccC
Q psy15857        437 DALIPSLFLPHSN  449 (455)
Q Consensus       437 ~~cfv~~ilSHG~  449 (455)
                      .|.+++.+.-||.
T Consensus       168 gD~l~fyFSGHG~  180 (367)
T 4af8_A          168 GDVLFFHYSGHGT  180 (367)
T ss_dssp             TCEEEEEEESCEE
T ss_pred             CCEEEEEEcCCcC
Confidence            7889999999996

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	455
d1m72a_	256	c.17.1.1 (A:) Caspase-1 {Fall armyworm (Spodoptera	2e-51
d1m72a_	256	c.17.1.1 (A:) Caspase-1 {Fall armyworm (Spodoptera	1e-20
d1m72a_	256	c.17.1.1 (A:) Caspase-1 {Fall armyworm (Spodoptera	1e-20
g1nme.1	238	c.17.1.1 (A:,B:) Apopain (caspase-3, cpp32) {Human	3e-39
g1nme.1	238	c.17.1.1 (A:,B:) Apopain (caspase-3, cpp32) {Human	5e-15
g1nme.1	238	c.17.1.1 (A:,B:) Apopain (caspase-3, cpp32) {Human	8e-15
d1f1ja_	245	c.17.1.1 (A:) Caspase-7 {Human (Homo sapiens) [Tax	3e-38
d1f1ja_	245	c.17.1.1 (A:) Caspase-7 {Human (Homo sapiens) [Tax	5e-15
d1f1ja_	245	c.17.1.1 (A:) Caspase-7 {Human (Homo sapiens) [Tax	8e-15
g1qtn.1	242	c.17.1.1 (A:,B:) Caspase-8 {Human (Homo sapiens) [	8e-35
g1qtn.1	242	c.17.1.1 (A:,B:) Caspase-8 {Human (Homo sapiens) [	9e-13
g1qtn.1	242	c.17.1.1 (A:,B:) Caspase-8 {Human (Homo sapiens) [	9e-13
g1pyo.1	257	c.17.1.1 (A:,B:) Caspase-2 {Human (Homo sapiens) [	2e-34
g1pyo.1	257	c.17.1.1 (A:,B:) Caspase-2 {Human (Homo sapiens) [	5e-16
g1pyo.1	257	c.17.1.1 (A:,B:) Caspase-2 {Human (Homo sapiens) [	7e-16
d1nw9b_	277	c.17.1.1 (B:) Caspase-9 {Human (Homo sapiens) [Tax	3e-33
d1nw9b_	277	c.17.1.1 (B:) Caspase-9 {Human (Homo sapiens) [Tax	6e-15
d1nw9b_	277	c.17.1.1 (B:) Caspase-9 {Human (Homo sapiens) [Tax	6e-15
g1sc3.1	261	c.17.1.1 (A:,B:) Interleukin-1beta converting enzy	3e-25
g1sc3.1	261	c.17.1.1 (A:,B:) Interleukin-1beta converting enzy	7e-09
g1sc3.1	261	c.17.1.1 (A:,B:) Interleukin-1beta converting enzy	8e-09

>d1m72a_ c.17.1.1 (A:) Caspase-1 {Fall armyworm (Spodoptera frugiperda) [TaxId: 7108]} Length = 256

class: Alpha and beta proteins (a/b)
fold: Caspase-like
superfamily: Caspase-like
family: Caspase catalytic domain
domain: Caspase-1
species: Fall armyworm (Spodoptera frugiperda) [TaxId: 7108]

 Score =  172 bits (437), Expect = 2e-51
 Identities = 105/176 (59%), Positives = 132/176 (75%), Gaps = 1/176 (0%)

Query: 5   VAKSTVEKDADYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVV 64
           VA+  V+++A YY M+HKHRG+A+IFNHEHFD   LKSR GT  D +NL   L  LGF V
Sbjct: 2   VARMPVDRNAPYYNMNHKHRGMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGFKV 61

Query: 65  KPYHDPEFKVIQNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTA 124
             + + + + I   I + AE D++DADC ++AVLTHGE G+L+AKD  YKP NLW  FTA
Sbjct: 62  TVFPNLKSEEINKFIQQTAEMDHSDADCLLVAVLTHGELGMLYAKDTHYKPDNLWYYFTA 121

Query: 125 DNCLTLAGKPKLFFIQACQGDKLDAGVTI-RTQVDGHPSNTYSIPLHADFLMAYST 179
           D C TLAGKPKLFFIQACQGD+LD G+T+ RT+ DG PS +Y IP+HADFL+A+ST
Sbjct: 122 DKCPTLAGKPKLFFIQACQGDRLDGGITLSRTETDGSPSTSYRIPVHADFLIAFST 177

>d1m72a_ c.17.1.1 (A:) Caspase-1 {Fall armyworm (Spodoptera frugiperda) [TaxId: 7108]} Length = 256

class: Alpha and beta proteins (a/b)
fold: Caspase-like
superfamily: Caspase-like
family: Caspase catalytic domain
domain: Caspase-1
species: Fall armyworm (Spodoptera frugiperda) [TaxId: 7108]

 Score = 88.6 bits (219), Expect = 1e-20
 Identities = 37/77 (48%), Positives = 50/77 (64%)

Query: 279 VAKSTVEKDADYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVV 338
           VA+  V+++A YY M+HKHRG+A+IFNHEHFD   LKSR GT  D +NL   L  LGF V
Sbjct: 2   VARMPVDRNAPYYNMNHKHRGMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGFKV 61

Query: 339 KPYHDPEFKVIQNAIDE 355
             + + + + I   I +
Sbjct: 62  TVFPNLKSEEINKFIQQ 78

>d1m72a_ c.17.1.1 (A:) Caspase-1 {Fall armyworm (Spodoptera frugiperda) [TaxId: 7108]} Length = 256

class: Alpha and beta proteins (a/b)
fold: Caspase-like
superfamily: Caspase-like
family: Caspase catalytic domain
domain: Caspase-1
species: Fall armyworm (Spodoptera frugiperda) [TaxId: 7108]

 Score = 88.6 bits (219), Expect = 1e-20
 Identities = 37/77 (48%), Positives = 50/77 (64%)

Query: 358 VAKSTVEKDADYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVV 417
           VA+  V+++A YY M+HKHRG+A+IFNHEHFD   LKSR GT  D +NL   L  LGF V
Sbjct: 2   VARMPVDRNAPYYNMNHKHRGMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGFKV 61

Query: 418 KPYHDPEFKVIQNAIDE 434
             + + + + I   I +
Sbjct: 62  TVFPNLKSEEINKFIQQ 78

>d1f1ja_ c.17.1.1 (A:) Caspase-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 245

class: Alpha and beta proteins (a/b)
fold: Caspase-like
superfamily: Caspase-like
family: Caspase catalytic domain
domain: Caspase-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  137 bits (345), Expect = 3e-38
 Identities = 65/173 (37%), Positives = 99/173 (57%), Gaps = 3/173 (1%)

Query: 17  YRMDHKHRGLALIFNHEHFD-SPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVI 75
           Y M+ +  G  +I N+++FD    +  R GT  D E L+    +LGF V  Y+D     +
Sbjct: 3   YNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVIVYNDCSCAKM 62

Query: 76  QNAIDEAAEQDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAGKPK 135
           Q+ + +A+E+D+T+A CF   +L+HGE+ +++ KD     K+L + F  D   TL  KPK
Sbjct: 63  QDLLKKASEEDHTNAACFACILLSHGEENVIYGKDGVTPIKDLTAHFRGDRSKTLLEKPK 122

Query: 136 LFFIQACQGDKLDAGVTIRTQV--DGHPSNTYSIPLHADFLMAYSTISDSPMF 186
           LFFIQAC+G +LD G+   +    D   +  Y IP+ ADFL AYST+     +
Sbjct: 123 LFFIQACRGTELDDGIQADSGPINDTDANPRYKIPVEADFLFAYSTVPGYYSW 175

>d1f1ja_ c.17.1.1 (A:) Caspase-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 245

class: Alpha and beta proteins (a/b)
fold: Caspase-like
superfamily: Caspase-like
family: Caspase catalytic domain
domain: Caspase-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.1 bits (176), Expect = 5e-15
 Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 7/92 (7%)

Query: 370 YRMDHKHRGLALIFNHEHFD-SPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVI 428
           Y M+ +  G  +I N+++FD    +  R GT  D E L+    +LGF V  Y+D     +
Sbjct: 3   YNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVIVYNDCSCAKM 62

Query: 429 QNAIDEGKDALIPS------LFLPHSNKAGVF 454
           Q+ + +  +    +      + L H  +  ++
Sbjct: 63  QDLLKKASEEDHTNAACFACILLSHGEENVIY 94

>d1f1ja_ c.17.1.1 (A:) Caspase-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 245

class: Alpha and beta proteins (a/b)
fold: Caspase-like
superfamily: Caspase-like
family: Caspase catalytic domain
domain: Caspase-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.8 bits (175), Expect = 8e-15
 Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 1/89 (1%)

Query: 291 YRMDHKHRGLALIFNHEHFD-SPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVI 349
           Y M+ +  G  +I N+++FD    +  R GT  D E L+    +LGF V  Y+D     +
Sbjct: 3   YNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVIVYNDCSCAKM 62

Query: 350 QNAIDEGPVAKSTVEKDADYYRMDHKHRG 378
           Q+ + +      T         + H    
Sbjct: 63  QDLLKKASEEDHTNAACFACILLSHGEEN 91

>d1nw9b_ c.17.1.1 (B:) Caspase-9 {Human (Homo sapiens) [TaxId: 9606]} Length = 277

class: Alpha and beta proteins (a/b)
fold: Caspase-like
superfamily: Caspase-like
family: Caspase catalytic domain
domain: Caspase-9
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  124 bits (312), Expect = 3e-33
 Identities = 53/211 (25%), Positives = 81/211 (38%), Gaps = 9/211 (4%)

Query: 15  DYYRMDHKHRGLALIFNHEHFD-SPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFK 73
             Y +  +  G  LI N+ +F     L++R G+  D E L     +L F+V+   D   K
Sbjct: 12  LAYILSMEPCGHCLIINNVNFCRESGLRTRTGSNIDCEKLRRRFSSLHFMVEVKGDLTAK 71

Query: 74  VIQNAIDEAAEQDYTDADCFVMAVLTHG-EDGILHAKDVPYKP-------KNLWSKFTAD 125
            +  A+ E A QD+   DC V+ +L+HG +   L      Y         + + + F   
Sbjct: 72  KMVLALLELARQDHGALDCCVVVILSHGCQASHLQFPGAVYGTDGCPVSVEKIVNIFNGT 131

Query: 126 NCLTLAGKPKLFFIQACQGDKLDAGVTIRTQVDGHPSNTYSIPLHADFLMAYSTISDSPM 185
           +C +L GKPKLFFIQAC G++ D G  + +      S   +    A          D   
Sbjct: 132 SCPSLGGKPKLFFIQACGGEQKDHGFEVASTSPEDESPGSNPEPDATPFQEGLRTFDQLD 191

Query: 186 FGQRFGLKDKCSKVVSKTYQVMSSNVDTSNG 216
                          S     +S     S  
Sbjct: 192 AISSLPTPSDIFVSYSTFPGFVSWRDPKSGS 222

>d1nw9b_ c.17.1.1 (B:) Caspase-9 {Human (Homo sapiens) [TaxId: 9606]} Length = 277

class: Alpha and beta proteins (a/b)
fold: Caspase-like
superfamily: Caspase-like
family: Caspase catalytic domain
domain: Caspase-9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.6 bits (177), Expect = 6e-15
 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 1/68 (1%)

Query: 289 DYYRMDHKHRGLALIFNHEHFD-SPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFK 347
             Y +  +  G  LI N+ +F     L++R G+  D E L     +L F+V+   D   K
Sbjct: 12  LAYILSMEPCGHCLIINNVNFCRESGLRTRTGSNIDCEKLRRRFSSLHFMVEVKGDLTAK 71

Query: 348 VIQNAIDE 355
            +  A+ E
Sbjct: 72  KMVLALLE 79

>d1nw9b_ c.17.1.1 (B:) Caspase-9 {Human (Homo sapiens) [TaxId: 9606]} Length = 277

class: Alpha and beta proteins (a/b)
fold: Caspase-like
superfamily: Caspase-like
family: Caspase catalytic domain
domain: Caspase-9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.6 bits (177), Expect = 6e-15
 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 1/68 (1%)

Query: 368 DYYRMDHKHRGLALIFNHEHFD-SPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFK 426
             Y +  +  G  LI N+ +F     L++R G+  D E L     +L F+V+   D   K
Sbjct: 12  LAYILSMEPCGHCLIINNVNFCRESGLRTRTGSNIDCEKLRRRFSSLHFMVEVKGDLTAK 71

Query: 427 VIQNAIDE 434
            +  A+ E
Sbjct: 72  KMVLALLE 79

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	455
d1m72a_	256	Caspase-1 {Fall armyworm (Spodoptera frugiperda) [	100.0
d1f1ja_	245	Caspase-7 {Human (Homo sapiens) [TaxId: 9606]}	100.0
g1nme.1	238	Apopain (caspase-3, cpp32) {Human (Homo sapiens) [	100.0
g1pyo.1	257	Caspase-2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
g1qtn.1	242	Caspase-8 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1nw9b_	277	Caspase-9 {Human (Homo sapiens) [TaxId: 9606]}	100.0
g1sc3.1	261	Interleukin-1beta converting enzyme (a cysteine pr	100.0
d1m72a_	256	Caspase-1 {Fall armyworm (Spodoptera frugiperda) [	99.83
d1f1ja_	245	Caspase-7 {Human (Homo sapiens) [TaxId: 9606]}	99.72
g1pyo.1	257	Caspase-2 {Human (Homo sapiens) [TaxId: 9606]}	99.68
g1qtn.1	242	Caspase-8 {Human (Homo sapiens) [TaxId: 9606]}	99.66
g1nme.1	238	Apopain (caspase-3, cpp32) {Human (Homo sapiens) [	99.65
d1nw9b_	277	Caspase-9 {Human (Homo sapiens) [TaxId: 9606]}	99.62
g1sc3.1	261	Interleukin-1beta converting enzyme (a cysteine pr	99.41

>d1m72a_ c.17.1.1 (A:) Caspase-1 {Fall armyworm (Spodoptera frugiperda) [TaxId: 7108]}

class: Alpha and beta proteins (a/b)
fold: Caspase-like
superfamily: Caspase-like
family: Caspase catalytic domain
domain: Caspase-1
species: Fall armyworm (Spodoptera frugiperda) [TaxId: 7108]

Probab=100.00  E-value=2e-48  Score=378.19  Aligned_cols=211  Identities=50%  Similarity=0.831  Sum_probs=185.8

Q ss_pred             CccccccCCCCceeCCCCceeEEEEEeCCCCCCCCCCCCCChHHhHHHHHHHHHhCCcEEEEecCCCHHHHHHHHHHHHh
Q psy15857          5 VAKSTVEKDADYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVIQNAIDEAAE   84 (455)
Q Consensus         5 ~~~~~~~~~~~~Y~m~~~~~G~aLIInN~~F~~~~l~~R~Gs~~D~~~L~~~F~~LGF~V~~~~nlt~~em~~~l~~~s~   84 (455)
                      ++++|++++.++|+|++.|||+||||||..|.+..+++|.||++|+++|+++|++|||+|+++.|+|.++|.++|++|++
T Consensus         2 ~~~~~~~~~~~~Y~m~~~~rG~aLIInN~~f~~~~~~~r~g~~~Da~~l~~~l~~lGF~V~~~~nlt~~~m~~~l~~~~~   81 (256)
T d1m72a_           2 VARMPVDRNAPYYNMNHKHRGMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGFKVTVFPNLKSEEINKFIQQTAE   81 (256)
T ss_dssp             EEECCSCTTCSBCCCCSSEEEEEEEEECCCCSSTTCCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHT
T ss_pred             ccccCCCCCCCEecCCCCCccEEEEEeCCccCCCCCCCCCChHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHhh
Confidence            57889999999999999999999999999998777899999999999999999999999999999999999999999998


Q ss_pred             hcCCCCceEEEEEecCCCCceeeeeCCccChhhhHHhhccccccccCCCceEEEEecccCCccCCCceeee-ccCCCCCC
Q psy15857         85 QDYTDADCFVMAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAGKPKLFFIQACQGDKLDAGVTIRT-QVDGHPSN  163 (455)
Q Consensus        85 ~d~~~~d~~vvvilSHG~~g~I~g~D~~v~~~~I~~~F~~~~c~~L~gKPKlFfiQACRG~~~d~gv~~~~-~~d~~~~~  163 (455)
                      .++.++||++|+|||||.++.|+++|+.+++++++..|....|+.|++||||||||||||++.+.|+.... ..+.....
T Consensus        82 ~~~~~~d~~vv~~~~HG~~~~i~~~D~~~~~~~~~~~~~~~~~~~L~~KPKif~lqACRg~~~~~~~~~~~~~~~~~~~~  161 (256)
T d1m72a_          82 MDHSDADCLLVAVLTHGELGMLYAKDTHYKPDNLWYYFTADKCPTLAGKPKLFFIQACQGDRLDGGITLSRTETDGSPST  161 (256)
T ss_dssp             SCCTTEEEEEEEEESCEETTEEECSSSEECTTHHHHTTSTTTCGGGTTSCEEEEEESCSSSBCBCCEEEEC---------
T ss_pred             hhccCCCeEEEEEeccCcCCEEEecCCcccchHHhhhhhhhhhHHHcCCcEEEEEecCcCCcccCCcccccccccccccc
Confidence            88888999999999999999999999999999999999999999999999999999999999998876521 12222345


Q ss_pred             CcCCCCCCCEEEEEccCCCCccccCc----hhHHHHHHHHhHhH----HHHhhhcccCCC
Q psy15857        164 TYSIPLHADFLMAYSTISDSPMFGQR----FGLKDKCSKVVSKT----YQVMSSNVDTSN  215 (455)
Q Consensus       164 ~~~iP~~aD~Li~yST~pG~vS~R~~----~fIq~Lc~~~~~~~----~~~m~~~~~~~~  215 (455)
                      ...+|..+|+||+|||.||++|||++    ||||+||+.|.+..    +..|..+|++.+
T Consensus       162 ~~~~p~~~d~lia~st~~g~~a~~~~~~gS~fi~~L~~~l~~~~~~~~l~~il~~V~~~V  221 (256)
T d1m72a_         162 SYRIPVHADFLIAFSTVPGYFSWRNTTRGSWFMQALCEELRYAGTERDILTLLTFVCQKV  221 (256)
T ss_dssp             CEEECTTCSEEEEESSCTTBCCEEETTTEEHHHHHHHHHHHHHTTTSCHHHHHHHHHHHH
T ss_pred             ccccCCCCCeeEEEecccceeeccCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence            56789999999999999999999976    89999999887753    444555555444

>d1f1ja_ c.17.1.1 (A:) Caspase-7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Caspase-like
superfamily: Caspase-like
family: Caspase catalytic domain
domain: Caspase-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.1e-46  Score=359.12  Aligned_cols=200  Identities=34%  Similarity=0.568  Sum_probs=172.3

Q ss_pred             ceeCCCCceeEEEEEeCCCCCC-CCCCCCCChHHhHHHHHHHHHhCCcEEEEecCCCHHHHHHHHHHHHhhcCCCCceEE
Q psy15857         16 YYRMDHKHRGLALIFNHEHFDS-PHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVIQNAIDEAAEQDYTDADCFV   94 (455)
Q Consensus        16 ~Y~m~~~~~G~aLIInN~~F~~-~~l~~R~Gs~~D~~~L~~~F~~LGF~V~~~~nlt~~em~~~l~~~s~~d~~~~d~~v   94 (455)
                      +|+|+++|+|+||||||.+|.. +.+++|.||++|+++|+++|++|||+|+++.|+|.+||.+.|++|++..+..+||++
T Consensus         2 ~Y~m~~~~rG~aLII~n~~f~~~~~l~~r~g~~~Da~~l~~~l~~lGF~V~~~~nl~~~em~~~l~~~~~~~~~~~~~~v   81 (245)
T d1f1ja_           2 QYNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVIVYNDCSCAKMQDLLKKASEEDHTNAACFA   81 (245)
T ss_dssp             BCCCCSSEEEEEEEEECCCCCTTTTCCCCTTHHHHHHHHHHHHHHHTEEEEEEESCCHHHHHHHHHHHHHSCGGGEEEEE
T ss_pred             CCcCCCCcCcEEEEEeCcCCCCcCCCCCCCChHHHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHHHhccCCceEE
Confidence            6999999999999999999976 578899999999999999999999999999999999999999999988788899999


Q ss_pred             EEEecCCCCceeeeeCCccChhhhHHhhccccccccCCCceEEEEecccCCccCCCceeeec--cCCCCCCCcCCCCCCC
Q psy15857         95 MAVLTHGEDGILHAKDVPYKPKNLWSKFTADNCLTLAGKPKLFFIQACQGDKLDAGVTIRTQ--VDGHPSNTYSIPLHAD  172 (455)
Q Consensus        95 vvilSHG~~g~I~g~D~~v~~~~I~~~F~~~~c~~L~gKPKlFfiQACRG~~~d~gv~~~~~--~d~~~~~~~~iP~~aD  172 (455)
                      |+|||||.++.|+|.|+.++++++...|....||+|++||||||||||||.+.+.|+.....  .+........+|..+|
T Consensus        82 v~~~~HG~~~~i~g~d~~~~v~~~~~~~~~~~~~~L~~kpKif~iqaCrg~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d  161 (245)
T d1f1ja_          82 CILLSHGEENVIYGKDGVTPIKDLTAHFRGDRSKTLLEKPKLFFIQACRGTELDDGIQADSGPINDTDANPRYKIPVEAD  161 (245)
T ss_dssp             EEEESCEETTEEECSSSEEEHHHHHHTTSTTTCGGGTTSCEEEEEESCCSSBCBCCBC---------------CBCTTTT
T ss_pred             EEEeeccccceEecCCCcEEcchhhhhccchhhHHHhhcchhhehhhhcCcccccceeecCCCCCccccccccccCCCCC
Confidence            99999999999999999999999999999999999999999999999999999988754211  1122234568899999


Q ss_pred             EEEEEccCCCCccccCc----hhHHHHHHHHhHhH----HHHhhhcccCCC
Q psy15857        173 FLMAYSTISDSPMFGQR----FGLKDKCSKVVSKT----YQVMSSNVDTSN  215 (455)
Q Consensus       173 ~Li~yST~pG~vS~R~~----~fIq~Lc~~~~~~~----~~~m~~~~~~~~  215 (455)
                      +||+|||.||++|||++    ||||+||+.|.+..    +.-|..+++..+
T Consensus       162 ~li~~st~~g~~a~~~~~~gS~fi~~L~~~l~~~~~~~~l~~il~~V~~~V  212 (245)
T d1f1ja_         162 FLFAYSTVPGYYSWRSPGRGSWFVQALCSILEEHGKDLEIMQILTRVNDRV  212 (245)
T ss_dssp             EEEEESSCTTBCCEEETTTEEHHHHHHHHHHHHHTTTSCHHHHHHHHHHHH
T ss_pred             eEEEEecCCCceeccCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence            99999999999999975    89999999887753    334555555444

>d1nw9b_ c.17.1.1 (B:) Caspase-9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Caspase-like
superfamily: Caspase-like
family: Caspase catalytic domain
domain: Caspase-9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.1e-41  Score=327.90  Aligned_cols=218  Identities=26%  Similarity=0.359  Sum_probs=175.1

Q ss_pred             CCCCceeCCCCceeEEEEEeCCCCCC-CCCCCCCChHHhHHHHHHHHHhCCcEEEEecCCCHHHHHHHHHHHHhhcCCCC
Q psy15857         12 KDADYYRMDHKHRGLALIFNHEHFDS-PHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVIQNAIDEAAEQDYTDA   90 (455)
Q Consensus        12 ~~~~~Y~m~~~~~G~aLIInN~~F~~-~~l~~R~Gs~~D~~~L~~~F~~LGF~V~~~~nlt~~em~~~l~~~s~~d~~~~   90 (455)
                      +....|+|+++|||+||||||.+|.. .++++|.||++|+++|+++|++|||+|+++.|+|+++|.+++.++..+++...
T Consensus         9 ~~~~~y~m~~~prG~aLII~n~~f~~~~~l~~r~Ga~~Da~~l~~~l~~lGF~V~~~~nlt~~~~~~~l~~~~~~~~~~~   88 (277)
T d1nw9b_           9 NADLAYILSMEPCGHCLIINNVNFCRESGLRTRTGSNIDCEKLRRRFSSLHFMVEVKGDLTAKKMVLALLELARQDHGAL   88 (277)
T ss_dssp             CTTTBCCCCCSSCEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTEEEEEEESCCHHHHHHHHHHHHHSCCTTC
T ss_pred             CCCcEeECCCCcccEEEEEeCccCCCccCCCCCCCcHHHHHHHHHHHHHCCCEEEEeeCCCHHHHHHHHHHhhhhcccCC
Confidence            45677999999999999999999975 56899999999999999999999999999999999999999999998888889


Q ss_pred             ceEEEEEecCCCC-------ceeeeeCCc-cChhhhHHhhccccccccCCCceEEEEecccCCccCCCceeee-------
Q psy15857         91 DCFVMAVLTHGED-------GILHAKDVP-YKPKNLWSKFTADNCLTLAGKPKLFFIQACQGDKLDAGVTIRT-------  155 (455)
Q Consensus        91 d~~vvvilSHG~~-------g~I~g~D~~-v~~~~I~~~F~~~~c~~L~gKPKlFfiQACRG~~~d~gv~~~~-------  155 (455)
                      ||+||+|+|||.+       +.+++.|+. ++++++...|....|+.|.+||||||||||||+..+.|.....       
T Consensus        89 d~~v~~~~gHG~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~kpki~~idaCr~~~~~~~~~~~~~~~~~~~  168 (277)
T d1nw9b_          89 DCCVVVILSHGCQASHLQFPGAVYGTDGCPVSVEKIVNIFNGTSCPSLGGKPKLFFIQACGGEQKDHGFEVASTSPEDES  168 (277)
T ss_dssp             SEEEEEEEEEEECCCCSSSCCEEECTTSCEEEHHHHHHTTCTTTCGGGTTSCEEEEEEEEC-------------------
T ss_pred             CEEEEEEeCCCcccccccccCcccCCccccccHHHHHHHhHHhhhhhcccCcEEEEEecccCCcccccccccccCccccc
Confidence            9999999999975       567888886 8999999999999999999999999999999998887654310       


Q ss_pred             -----ccCC-----------CCCCCcCCCCCCCEEEEEccCCCCccccCc----hhHHHHHHHHhHhH----HHHhhhcc
Q psy15857        156 -----QVDG-----------HPSNTYSIPLHADFLMAYSTISDSPMFGQR----FGLKDKCSKVVSKT----YQVMSSNV  211 (455)
Q Consensus       156 -----~~d~-----------~~~~~~~iP~~aD~Li~yST~pG~vS~R~~----~fIq~Lc~~~~~~~----~~~m~~~~  211 (455)
                           +.+.           .......+|..+|++|+|||.||++|||++    |||++||+.|.+..    +.-|..++
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~~i~~st~~g~~a~~~~~~gS~f~~~L~~~l~~~~~~~~l~~il~~V  248 (277)
T d1nw9b_         169 PGSNPEPDATPFQEGLRTFDQLDAISSLPTPSDIFVSYSTFPGFVSWRDPKSGSWYVETLDDIFEQWAHSEDLQSLLLRV  248 (277)
T ss_dssp             --------CBCCC------------CCCCCSCSEEEEEECCCCBSSTTCTTSCBHHHHHHHHHHHHHTTTSCHHHHHHHH
T ss_pred             ccccccccccchhcccccccccccccccCCcccceEEEecccceEEecCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence                 0000           112355789999999999999999999975    89999999887743    44566777


Q ss_pred             cCCCCccccccccccccC
Q psy15857        212 DTSNGECQTDGHESHTNG  229 (455)
Q Consensus       212 ~~~~~e~~~~~~~~~~~~  229 (455)
                      ++.+.......|.||..+
T Consensus       249 ~~~V~~~~~~kQ~P~~~s  266 (277)
T d1nw9b_         249 ANAVSVKGIYKQMPGCFN  266 (277)
T ss_dssp             HHHHHTTCCSCCCCCCEE
T ss_pred             HHHHHHhcCCceeeEEee
Confidence            777766665667776543

>d1m72a_ c.17.1.1 (A:) Caspase-1 {Fall armyworm (Spodoptera frugiperda) [TaxId: 7108]}

class: Alpha and beta proteins (a/b)
fold: Caspase-like
superfamily: Caspase-like
family: Caspase catalytic domain
domain: Caspase-1
species: Fall armyworm (Spodoptera frugiperda) [TaxId: 7108]

Probab=99.83  E-value=1.5e-21  Score=187.84  Aligned_cols=120  Identities=38%  Similarity=0.557  Sum_probs=107.1

Q ss_pred             cccccccCccccccCCCCcceEEEEEeCCCCCCCCCCCCCCChHhHHHHHHHHhhcCCEEEEecCccHHHHHHHhhcCCC
Q psy15857        279 VAKSTVEKDADYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVIQNAIDEGPV  358 (455)
Q Consensus       279 ~a~~~~~~~~~~Y~m~~~~rG~~lI~n~~~F~~~~l~~R~Gt~~D~~~l~~~~~~Lgf~V~~~~d~~~~~i~~~l~k~~~  358 (455)
                      +|+||+++++++|+|+|+|||+||||||++|....|+.|.||.+|+++|+++|++|||+|+++.|++.++|.+.|+    
T Consensus         2 ~~~~~~~~~~~~Y~m~~~~rG~aLIInN~~f~~~~~~~r~g~~~Da~~l~~~l~~lGF~V~~~~nlt~~~m~~~l~----   77 (256)
T d1m72a_           2 VARMPVDRNAPYYNMNHKHRGMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGFKVTVFPNLKSEEINKFIQ----   77 (256)
T ss_dssp             EEECCSCTTCSBCCCCSSEEEEEEEEECCCCSSTTCCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHH----
T ss_pred             ccccCCCCCCCEecCCCCCccEEEEEeCCccCCCCCCCCCChHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHH----
Confidence            5899999999999999999999999999999877899999999999999999999999999999999999999998    


Q ss_pred             cccccccccccccCCCCcccEEEEEEeccCCCCCCCCCCCcHHhHHHHHHHHHh
Q psy15857        359 AKSTVEKDADYYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVN  412 (455)
Q Consensus       359 ~~s~~~~~~~~Y~m~~~~~g~~lIin~~~F~~~~l~~R~Gs~~D~e~L~~~F~~  412 (455)
                               +..++.|.+.++++++-..|+..+.+.+.++. .+++.+...|..
T Consensus        78 ---------~~~~~~~~~~d~~vv~~~~HG~~~~i~~~D~~-~~~~~~~~~~~~  121 (256)
T d1m72a_          78 ---------QTAEMDHSDADCLLVAVLTHGELGMLYAKDTH-YKPDNLWYYFTA  121 (256)
T ss_dssp             ---------HHHTSCCTTEEEEEEEEESCEETTEEECSSSE-ECTTHHHHTTST
T ss_pred             ---------HHhhhhccCCCeEEEEEeccCcCCEEEecCCc-ccchHHhhhhhh
Confidence                     56677777888999999999987667777774 566777666643

>d1f1ja_ c.17.1.1 (A:) Caspase-7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Caspase-like
superfamily: Caspase-like
family: Caspase catalytic domain
domain: Caspase-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=1.4e-18  Score=165.55  Aligned_cols=111  Identities=23%  Similarity=0.343  Sum_probs=98.7

Q ss_pred             cccCCCCcceEEEEEeCCCCCC-CCCCCCCCChHhHHHHHHHHhhcCCEEEEecCccHHHHHHHhhcCCCcccccccccc
Q psy15857        290 YYRMDHKHRGLALIFNHEHFDS-PHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVIQNAIDEGPVAKSTVEKDAD  368 (455)
Q Consensus       290 ~Y~m~~~~rG~~lI~n~~~F~~-~~l~~R~Gt~~D~~~l~~~~~~Lgf~V~~~~d~~~~~i~~~l~k~~~~~s~~~~~~~  368 (455)
                      .|+|+++|||+||||||++|+. +.|++|.||.+|+++|.++|++|||+|.++.|++.+||.+.|.             +
T Consensus         2 ~Y~m~~~~rG~aLII~n~~f~~~~~l~~r~g~~~Da~~l~~~l~~lGF~V~~~~nl~~~em~~~l~-------------~   68 (245)
T d1f1ja_           2 QYNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVIVYNDCSCAKMQDLLK-------------K   68 (245)
T ss_dssp             BCCCCSSEEEEEEEEECCCCCTTTTCCCCTTHHHHHHHHHHHHHHHTEEEEEEESCCHHHHHHHHH-------------H
T ss_pred             CCcCCCCcCcEEEEEeCcCCCCcCCCCCCCChHHHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHH-------------H
Confidence            5999999999999999999985 5799999999999999999999999999999999999999998             4


Q ss_pred             cccCCCCcccEEEEEEeccCCCCCCCCCCCcHHhHHHHHHHHHhcC
Q psy15857        369 YYRMDHKHRGLALIFNHEHFDSPHLKSRAGTGADFENLYTTLVNLG  414 (455)
Q Consensus       369 ~Y~m~~~~~g~~lIin~~~F~~~~l~~R~Gs~~D~e~L~~~F~~Lg  414 (455)
                      ..+..+.+.++++++-.+|+..+.+.++++. ++++.+...|....
T Consensus        69 ~~~~~~~~~~~~vv~~~~HG~~~~i~g~d~~-~~v~~~~~~~~~~~  113 (245)
T d1f1ja_          69 ASEEDHTNAACFACILLSHGEENVIYGKDGV-TPIKDLTAHFRGDR  113 (245)
T ss_dssp             HHHSCGGGEEEEEEEEESCEETTEEECSSSE-EEHHHHHHTTSTTT
T ss_pred             HHHHhccCCceEEEEEeeccccceEecCCCc-EEcchhhhhccchh
Confidence            5666777788999999999987777788884 78888888886544

>d1nw9b_ c.17.1.1 (B:) Caspase-9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Caspase-like
superfamily: Caspase-like
family: Caspase catalytic domain
domain: Caspase-9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=2e-16  Score=152.25  Aligned_cols=110  Identities=22%  Similarity=0.253  Sum_probs=94.0

Q ss_pred             ccccCCCCcceEEEEEeCCCCCC-CCCCCCCCChHhHHHHHHHHhhcCCEEEEecCccHHHHHHHhhcCCCccccccccc
Q psy15857        289 DYYRMDHKHRGLALIFNHEHFDS-PHLKSRAGTGADFENLYTTLVNLGFVVKPYHDPEFKVIQNAIDEGPVAKSTVEKDA  367 (455)
Q Consensus       289 ~~Y~m~~~~rG~~lI~n~~~F~~-~~l~~R~Gt~~D~~~l~~~~~~Lgf~V~~~~d~~~~~i~~~l~k~~~~~s~~~~~~  367 (455)
                      ..|.|++.|||+||||||.+|.. +.|+.|.||+.|+++|+++|+.|||+|+++.|+++++|.+.+.             
T Consensus        12 ~~y~m~~~prG~aLII~n~~f~~~~~l~~r~Ga~~Da~~l~~~l~~lGF~V~~~~nlt~~~~~~~l~-------------   78 (277)
T d1nw9b_          12 LAYILSMEPCGHCLIINNVNFCRESGLRTRTGSNIDCEKLRRRFSSLHFMVEVKGDLTAKKMVLALL-------------   78 (277)
T ss_dssp             TBCCCCCSSCEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTEEEEEEESCCHHHHHHHHH-------------
T ss_pred             cEeECCCCcccEEEEEeCccCCCccCCCCCCCcHHHHHHHHHHHHHCCCEEEEeeCCCHHHHHHHHH-------------
Confidence            56999999999999999999975 5799999999999999999999999999999999999999987             


Q ss_pred             ccccCCCCcccEEEEEEeccCCCC-------CCCCCCCcHHhHHHHHHHHH
Q psy15857        368 DYYRMDHKHRGLALIFNHEHFDSP-------HLKSRAGTGADFENLYTTLV  411 (455)
Q Consensus       368 ~~Y~m~~~~~g~~lIin~~~F~~~-------~l~~R~Gs~~D~e~L~~~F~  411 (455)
                      +.....+.+.++++++-..|+...       .++..++..++++.+...|.
T Consensus        79 ~~~~~~~~~~d~~v~~~~gHG~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  129 (277)
T d1nw9b_          79 ELARQDHGALDCCVVVILSHGCQASHLQFPGAVYGTDGCPVSVEKIVNIFN  129 (277)
T ss_dssp             HHHHSCCTTCSEEEEEEEEEEECCCCSSSCCEEECTTSCEEEHHHHHHTTC
T ss_pred             HhhhhcccCCCEEEEEEeCCCcccccccccCcccCCccccccHHHHHHHhH
Confidence            345566777889999999998641       12356677788888877774