Psyllid ID: psy15878

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690---

MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFIEGITYVENSRPTKHSEYVTVDKRVFQSFDGKSLTEIYADNLDYSLTGSGPDAVLHLVQGNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAGRTGLQESGESIMLCKTMQDFLRFSSMMNAGPEPISSHMDPPTLVDLILEVVAANLCSSLEDVKTLIKHTLFYQLKSPEDQQTFLETTLSEIVASLLASKGTMLTMNEAGHLSLTSIAKAAVQAGLSHDVCLIIYSDLLHNKLNFCLLNSLHMLFLVIPLEYRIPSDGILLSRSKVYDRYTKFHPQTLRVAEALGVTENLVALNVTGKLKDEKKALLCRFFHACILYDVLNFDNHQKVAKMYGIQNSHLQNFLNVTSYFASKVYRFCEELPELWCYKQLLTDLPQTLMYCRAPNLRALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAAKLHFITKMDKVEAMKNLIQNLQKNYDNIVHNTK

cHHHHHHHHHHHHHHccEEEEEEccccccccccccccccccEEEEcccHHHHHHHcccccccccEEEEEEEEcEEcccccccccHHHHHHHHHHHcccccEEEEEEcccccHHHHHHHccccccccccccccccEEEEEccEEEEccccccHHHHHHcccccccccccHHHHHHHHHccccEEEEEcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHEEEcccccHHHHHHHHHHHHccccEEEEEcccccccccccccEEEEcccccccccccHHHHHHHHccccccccccccEEEEEEcccHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHcHHHHccccccHHHHHHHHHHHHHHHHHHHcccEEEEcccccEEEcHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHccccccHHHHHHHHcccHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHcccccHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccc

cHHHHHHHHHHHHHHcccEEEEEEcccccccccccHcccccEEEEEHHHHHHHHHHHHccccHHHccEEEEEEEEEEccccccHHHHHHHHHHHHHccccEEEEEEcccccHHHHHHHHccHHHcccccccccEEEEEEccEEEEccccEEEEEccccccccccccccHHHHHHHHHcccEEEEEcccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHcccccccHHHHHHHHcccEEEcccccHHHHHHHHHHHHcccEEEEEEcccHHcccccccEEEEEEccccccccccHHHHHHHccccccccccccccEEEEEcccHHHHHHHHHHcccccccHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccEEEEcccccEEEEcHHHHHHHHccccHHHHHHHHHHHHHHHcccccHccEEEEEEEcccccccccccccccHHHHHHHHHHccHHHHHHHHHccccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccHHHHHHHHccccccHHHHHHHHHcccccHHHHHHccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccc

MVHEKYQSLAKAAEEFKFYLEEYagvkgqypptkrqlnkksIYICTIEKGSKLIGSLIQenrideiglividefhmlnepqrgpileCVVSKVLYLKKSIQIFAMSATIGNINALSTFIEGITyvensrptkhseyvtVDKRVFQSFDGKSLTEIYAdnldysltgsgpdaVLHLVQGNLMVLIFCSSKIACSNLALRLqfdrfpgtkeyKKQEKEDLIEALKEendgklstnLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTstlaagvnlpaqRVIIrdsyvgrdfiSLNMYKQMVGragrtglqesgeSIMLCKTMQDFLRFssmmnagpepisshmdpptLVDLILEVVAANLCSSLEDVKTLIKHTLfyqlkspedQQTFLETTLSEIVASLLASKGTMLTMNEAGHLSLTSIAKAAVQAGLSHDVCLIIYSDLLHNKLNFCLLNSLHMLFLvipleyripsdgillsrskvydrytkfhpQTLRVAEALGVTENLVALNVTGKLKDEKKALLCRFFHACILYDVLNFDNHQKVAKMYGIQNSHLQNFLNVTSYFASKVYRFCEELPELWCYKQLLtdlpqtlmycrapnlralmdlpgvkiGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAAKLHFITKMDKVEAMKNLIQNLQKNYDNIVHNTK

MVHEKYQSLAKAAEEFKFYLEEYAgvkgqypptkrqlnkKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFIEGITYVENsrptkhseyvtvdkrvfqsFDGKSLTEIYADNLDYSLTGSGPDAVLHLVQGNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAGRTGLQESGESIMLCKTMQDFLRFSSMMNAGPEPISSHMDPPTLVDLILEVVAANLCSSLEDVKTLIKHTLFYQLKSPEDQQTFLETTLSEIVASLLASKGTMLTMNEAGHLSLTSIAKAAVQAGLSHDVCLIIYSDLLHNKLNFCLLNSLHMLFLVIPLEYRIPSDGILLSRSKVYDRYTKFHPQTLrvaealgvtENLVALNVTGKLKDEKKALLCRFFHACILYDVLNFDNHQKVAKMYGIQNSHLQNFLNVTSYFASKVYRFCEELPELWCYKQLLTDLPQTLMYCRAPNLRALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAAKLHFITKMDKVEAMKNLIQNlqknydnivhntk

************AEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFIEGITYVENSRPTKHSEYVTVDKRVFQSFDGKSLTEIYADNLDYSLTGSGPDAVLHLVQGNLMVLIFCSSKIACSNLALRLQFDRFPG************************STNLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAGRTGLQESGESIMLCKTMQDFLRF******************TLVDLILEVVAANLCSSLEDVKTLIKHTLFYQLKSPEDQQTFLETTLSEIVASLLASKGTMLTMNEAGHLSLTSIAKAAVQAGLSHDVCLIIYSDLLHNKLNFCLLNSLHMLFLVIPLEYRIPSDGILLSRSKVYDRYTKFHPQTLRVAEALGVTENLVALNVTGKLKDEKKALLCRFFHACILYDVLNFDNHQKVAKMYGIQNSHLQNFLNVTSYFASKVYRFCEELPELWCYKQLLTDLPQTLMYCRAPNLRALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAAKLHFITKMDKVEAMKNLIQNLQKNYDNI*****

MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPP**RQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFIEGITYVENSRPTKHSEYVTVDKRVFQSFDGKSLTEIYADNLDYSLTGSGPDAVLHLVQGNLMVLIFCSSKIACSNLALRLQFDRF****************************NLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAGRTGLQESGESIMLCKTMQDFLRFSSMMNAGPEPISSHMDPPTLVDLILEVVAANLCSSLEDVKTLIKHTLFYQLKSPEDQQTFLETTLSEIVASLLASKGTMLTMNEAGHLSLTSIAKAAVQAGLSHDVCLIIYSDLLHNKLNFCLLNSLHMLFLVIPLEYRIPSDGILLSRSKVYDRYTKFHPQTLRVAEALGVTENLVALN******DEKKALLCRFFHACILYDVLNFDNHQKVAKMYGIQNSHLQNFLNVTSYFASKVYRFCEELPELWCYKQLLTDLPQTLMYCRAPNLRALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPL*******************************************

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFIEGITYVENSRPTKHSEYVTVDKRVFQSFDGKSLTEIYADNLDYSLTGSGPDAVLHLVQGNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKxxxxxxxxxxxxxxxxxxxxxNLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAGRTGLQESGESIMLCKTMQDFLRFSSMMNAGPEPISSHMDPPTLVDLILEVVAANLCSSLEDVKTLIKHTLFYQLKSPEDQQTFLETTLSEIVASLLASKGTMLTMNEAGHLSLTSIAKAAVQAGLSHDVCLIIYSDLLHNKLNFCLLNSLHMLFLVIPLEYRIPSDGILLSRSKVYDRYTKFHPQTLRVAEALGVTENLVALNVTGKLKDEKKALLCRFFHACILYDVLNFDNHQKVAKMYGIQNSHLQNFLNVTSYFASKVYRFCEELPELWCYKQLLTDLPQTLMYCRAPNLRALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAAKLHFITKMDKxxxxxxxxxxxxxxxxxxxxxTK

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		693	2.2.26 [Sep-21-2011]
Q2VPA6		1069	Helicase POLQ-like OS=Mus	yes	N/A	0.962	0.623	0.350	1e-108
Q8TDG4		1101	Helicase POLQ-like OS=Hom	yes	N/A	0.962	0.605	0.350	1e-108
O75417		2590	DNA polymerase theta OS=H	no	N/A	0.890	0.238	0.278	2e-60
Q9YFQ8		735	Putative ski2-type helica	yes	N/A	0.825	0.778	0.266	5e-44
Q0W6L1		740	Putative ski2-type helica	yes	N/A	0.513	0.481	0.322	2e-43
A8MB76		756	Putative ski2-type helica	yes	N/A	0.901	0.826	0.259	2e-38
Q465R3		729	Putative ski2-type helica	yes	N/A	0.515	0.489	0.301	4e-38
Q8PZR7		730	Putative ski2-type helica	yes	N/A	0.518	0.491	0.297	1e-36
Q974S1		704	Putative ski2-type helica	yes	N/A	0.805	0.792	0.258	2e-36
Q12WZ6		760	Putative ski2-type helica	yes	N/A	0.518	0.472	0.301	1e-35

>sp\|Q2VPA6\|HELQ_MOUSE Helicase POLQ-like OS=Mus musculus GN=Helq PE=2 SV=2	Back alignment and function desciption

 Score =  393 bits (1010), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 247/704 (35%), Positives = 384/704 (54%), Gaps = 37/704 (5%)

Query: 1    MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQE 60
            +V EK  SL+    E  F++EEYAG KG++PP KR+  KKS+YI TIEK   L+ +LI+ 
Sbjct: 352  IVQEKISSLSSFGIELGFFVEEYAGSKGRFPPIKRR-EKKSLYIATIEKAHSLVNALIET 410

Query: 61   NRIDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFIE 120
            +R+  +GL+V+DE HM+ E  RG ILE  ++KVLY  K+ QI  MSAT+ N+  L  F++
Sbjct: 411  SRLSTLGLVVVDELHMIGEGSRGAILEMTLAKVLYTSKTTQIIGMSATLNNVEDLQAFLK 470

Query: 121  GITYVENSRPTKHSEYVTVDKRVF----QSFDGKSLTEIYADNLDYSLTGSGPDAVLHLV 176
               Y    RP +  E++ V+  ++    Q+ DG + + + +     +L    PD ++ LV
Sbjct: 471  AEYYTSQFRPVELKEFLKVNDTIYEVDSQAADGMTFSRLLSYKYSEALKKMDPDRLVALV 530

Query: 177  Q---GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTN 233
                 N   L+FC SK  C N+A  L          ++++EK ++I++L+   +GK+   
Sbjct: 531  TEVIPNYSCLVFCPSKKNCENVAEMLCKFLSKDYLNHREKEKCEVIKSLRNIGNGKVCPV 590

Query: 234  LEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYV 293
            L+  + +G+AYHH+ LT+ ER+L+EEAY  G L ++ CTSTLAAGVNLPA+RVI+R  YV
Sbjct: 591  LKRTVPFGIAYHHSGLTSEERKLLEEAYSTGVLCLLTCTSTLAAGVNLPARRVILRAPYV 650

Query: 294  GRDFISLNMYKQMVGRAGRTGLQESGESIMLC--KTMQDFLRFSSMMNAGP-EPISSHMD 350
               F+  N YKQMVGRAGR G+  +GESI+L   K  Q  L   S    GP E   SH+ 
Sbjct: 651  ANTFLKRNQYKQMVGRAGRAGIDTAGESILLLQEKDKQQVLELIS----GPLETCCSHLV 706

Query: 351  ---PPTLVDLILEVVAANLCSSLEDVKTLIKHTLF-YQLKSPEDQQTFLETTLSEIVASL 406
                  +  L L ++   + +SL D+   +  T F  Q K    +++  E T+  +    
Sbjct: 707  EEFTKGIQALFLSLIGLKIAASLGDIYQFMSGTFFGVQQKILLKEKSLWEITVDAL--EH 764

Query: 407  LASKGTMLTMNEAG-------HLSLTSIAKAAVQAGLSHDVCLIIYSDLLHNKLNFCLLN 459
            L  KG +L  +  G       H  +T + +A+ +  +    C  +Y DL        L +
Sbjct: 765  LTEKG-LLQKDSCGDNEGLECHFRITKLGQASFKGAIDLAYCDTLYRDLKKGLEGLVLES 823

Query: 460  SLHMLFLVIPLEYRIPSDGILLSRSKVYDRYTKFHPQTLRVAEALGVTENLVALNVTGKL 519
             LH+++L  P +    S+   +     + ++ +  P    VA  LGV+E+ +     G+ 
Sbjct: 824  LLHLIYLTTPYDLAAQSEPDWMV---YFKQFGQLSPTEQNVAALLGVSESFIGKKAAGQA 880

Query: 520  KDEK--KALLCRFFHACILYDVLNFDNHQKVAKMYGIQNSHLQNFLNVTSYFASKVYRFC 577
              +K  K ++ R + + +LY +L   N   V++ + +   ++QN L   + F+S V  FC
Sbjct: 881  VRKKVDKNVVNRLYLSFVLYSLLKETNVWSVSEKFNLPRGYIQNLLMGAASFSSCVLHFC 940

Query: 578  EELPELWCYKQLLTDLPQTLMYCRAPNLRALMDLPGVKIGRARQLLNAGYSSLELIARAD 637
            EEL E W YK LL +L + L YC    L  LM++ GV  GRA+QL NAGY S+  +A A+
Sbjct: 941  EELEEFWVYKALLVELTKKLTYCVKAELIPLMEVTGVLEGRAKQLYNAGYRSIMHLANAN 1000

Query: 638  AKEMVAKIRHLPLRSARNLISAAKLHFITKMDKVEAMKNLIQNL 681
             + +V  I HL  R AR ++S+AK+      +K EA++   + L
Sbjct: 1001 PEVLVKTIDHLSRRQARQIVSSAKMLL---HEKAEALQGEAEEL 1041

DNA-dependent ATPase and 5' to 3' DNA helicase.
Mus musculus (taxid: 10090)
EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 1EC: 2

>sp\|Q8TDG4\|HELQ_HUMAN Helicase POLQ-like OS=Homo sapiens GN=HELQ PE=1 SV=2	Back alignment and function description

>sp\|O75417\|DPOLQ_HUMAN DNA polymerase theta OS=Homo sapiens GN=POLQ PE=1 SV=2	Back alignment and function description

>sp\|Q9YFQ8\|HELS_AERPE Putative ski2-type helicase OS=Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=APE_0191.1 PE=3 SV=2	Back alignment and function description

>sp\|Q0W6L1\|HELS_UNCMA Putative ski2-type helicase OS=Uncultured methanogenic archaeon RC-I GN=UNCMA_22030 PE=3 SV=1	Back alignment and function description

>sp\|A8MB76\|HELS_CALMQ Putative ski2-type helicase OS=Caldivirga maquilingensis (strain ATCC 700844 / DSMZ 13496 / JCM 10307 / IC-167) GN=Cmaq_0318 PE=3 SV=1	Back alignment and function description

>sp\|Q465R3\|HELS_METBF Putative ski2-type helicase OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=Mbar_A3508 PE=3 SV=1	Back alignment and function description

>sp\|Q8PZR7\|HELS_METMA Putative ski2-type helicase OS=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) GN=MM_0425 PE=3 SV=1	Back alignment and function description

>sp\|Q974S1\|HELS_SULTO Putative ski2-type helicase OS=Sulfolobus tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) GN=STK_05900 PE=3 SV=1	Back alignment and function description

>sp\|Q12WZ6\|HELS_METBU Putative ski2-type helicase OS=Methanococcoides burtonii (strain DSM 6242) GN=Mbur_1102 PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		693
383859979		1014	PREDICTED: helicase POLQ-like [Megachile	0.966	0.660	0.365	1e-111
291401472		1054	PREDICTED: DNA helicase HEL308 [Oryctola	0.963	0.633	0.350	1e-109
50746585		1048	PREDICTED: helicase, POLQ-like [Gallus g	0.965	0.638	0.345	1e-109
354505767		1012	PREDICTED: helicase POLQ [Cricetulus gri	0.962	0.659	0.354	1e-109
345494548		975	PREDICTED: helicase POLQ-like isoform 1	0.971	0.690	0.350	1e-108
391332508		851	PREDICTED: helicase POLQ-like [Metaseiul	0.936	0.762	0.359	1e-107
449269167		1000	Helicase POLQ-like protein, partial [Col	0.955	0.662	0.356	1e-107
344284980		1121	PREDICTED: helicase POLQ [Loxodonta afri	0.966	0.597	0.353	1e-107
148688331		1066	mCG128467, isoform CRA_b [Mus musculus]	0.961	0.624	0.351	1e-107
326918720		1028	PREDICTED: helicase POLQ-like [Meleagris	0.962	0.648	0.342	1e-107

>gi\|383859979\|ref\|XP_003705469.1\| PREDICTED: helicase POLQ-like [Megachile rotundata]	Back alignment and taxonomy information

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 270/739 (36%), Positives = 410/739 (55%), Gaps = 69/739 (9%)

Query: 1    MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQE 60
            +V EK Q++A  A E  F +EEYA  KG YPP KR+  K SIY+CTIEK   LI SLI+E
Sbjct: 284  IVQEKVQAMAPFALELDFLIEEYAASKGAYPPKKRR-KKNSIYMCTIEKALGLINSLIEE 342

Query: 61   NRIDEIGLIVIDEFHMLNEPQ-RGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFI 119
             R  EIGLIV+DE H++ E   RG  LE +++K LY+ +++ I  MSATIGN+N ++ F+
Sbjct: 343  KRFKEIGLIVVDELHLIGEGGGRGATLEVILTKALYVNETVHIIGMSATIGNLNEIAEFL 402

Query: 120  EGITYVENSRPTKHSEYVTVDKRVFQSFDGKS---LTEIYADNLDYSLTGS--GPDAVLH 174
            +   Y  N RP +  EYV  D  ++   D KS   LT++   N  YS   +   PD +  
Sbjct: 403  KADLYTGNFRPVEIKEYVKCDDCIWL-LDLKSEELLTDMKKINYRYSSDAAIIDPDRIGG 461

Query: 175  LVQGNL---MVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLS 231
            LV   +     LIFCSS+  C N+AL L    F   + +K  EK++L+ AL+ E    L 
Sbjct: 462  LVMDVVPKDSCLIFCSSRKNCENVALLLTKILFKSLEAHKTNEKQNLLNALEREEG--LC 519

Query: 232  TNLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDS 291
              L++ I +GVAYHH+ LTA ERRL+E+A+ AGTL +ICCTSTLAAGVNLPA+RVI+R  
Sbjct: 520  PILQKTIRFGVAYHHSGLTAEERRLLEDAFKAGTLCVICCTSTLAAGVNLPARRVILRSP 579

Query: 292  YVGRDFISLNMYKQMVGRAGRTGLQESGESIMLCKTMQDFLRFSSMMNAGPEP-ISS-HM 349
            YVG +FI+L+ YKQM GRAGR G+ + GESI++CK   +  +   ++ +  +  ISS H+
Sbjct: 580  YVGSEFINLSRYKQMSGRAGRAGMGDIGESIIICKN-NELPKVKELLESKMDDCISSLHV 638

Query: 350  DPPTLV-DLILEVVAANLCSSLEDVKTLIKHTLF--YQLKSPEDQQTFLETTLSEIVASL 406
            +    + +LIL  +  ++  +  +++ L   TL    Q +   + +  +++ ++E++ S 
Sbjct: 639  NKDRGINNLILSAILYSIAKTRFELQKLATRTLLNIQQERLGINIKHIVDSAITELLKSG 698

Query: 407  LAS-----------------------------------KGTMLTMNEAGHLSLTSIAKAA 431
            +                                     K ++  MN+   L L ++ +AA
Sbjct: 699  VIKVKDKSKSIDVYQPNITVAIPSQITCPNESDIEKKVKKSIQLMNDT-KLDLCNLGRAA 757

Query: 432  VQAGLSHDVCLIIYSDLLHNKLNFCLLNSLHMLFLVIPLEYRIPSDGILLSRSKVYDRYT 491
            ++  +       +Y DL   + +  L++ LH+L+LV P +  IP   + +  S  YD   
Sbjct: 758  MKGCIDIQCAYTLYEDLKKAQEHLVLIDYLHLLYLVTPYDI-IPQ--VKVVGSVYYDVVI 814

Query: 492  KFHPQTLRVAEALGVTENLVALNVTGKL-KDEKKALLCRFFHACILYDVLNFDNHQKVAK 550
                  ++ A  LG+ E  +     G + K+ +  ++ RF+   ILYD+        +A+
Sbjct: 815  NLSETQMKTARVLGINEVAITKIRDGLMPKNVEPRVVQRFYVTLILYDLWCQHAVYTIAE 874

Query: 551  MYGIQNSHLQNFLNVTSYFASKVYRFCEELPELWCYKQLLTDLPQTLMYCRAPNLRALMD 610
             Y +    +QN L+  S FA  V RFC+EL E W +K LL    + L YC    L ALMD
Sbjct: 875  KYQVNRGTVQNLLSAVSTFAFSVVRFCQELDEFWAFKDLLDAFSKKLSYCCPLELEALMD 934

Query: 611  LPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAAKLHFITKMDK 670
            LP VKIGRARQL NAG+ +++ IA+   KE++ K+ +L  ++A ++I AAKL  + K   
Sbjct: 935  LPLVKIGRARQLYNAGFKTVQCIAKVQPKELLEKVPYLSKKTATHIIEAAKLIILEK--- 991

Query: 671  VEAMKNLIQNLQKNYDNIV 689
                   IQNL++  ++I+
Sbjct: 992  -------IQNLEEETEDIL 1003

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi\|291401472\|ref\|XP_002717082.1\| PREDICTED: DNA helicase HEL308 [Oryctolagus cuniculus]	Back alignment and taxonomy information

>gi\|50746585\|ref\|XP_420565.1\| PREDICTED: helicase, POLQ-like [Gallus gallus]	Back alignment and taxonomy information

>gi\|354505767\|ref\|XP_003514939.1\| PREDICTED: helicase POLQ [Cricetulus griseus]	Back alignment and taxonomy information

>gi\|345494548\|ref\|XP_003427318.1\| PREDICTED: helicase POLQ-like isoform 1 [Nasonia vitripennis]	Back alignment and taxonomy information

>gi\|391332508\|ref\|XP_003740676.1\| PREDICTED: helicase POLQ-like [Metaseiulus occidentalis]	Back alignment and taxonomy information

>gi\|449269167\|gb\|EMC79970.1\| Helicase POLQ-like protein, partial [Columba livia]	Back alignment and taxonomy information

>gi\|344284980\|ref\|XP_003414242.1\| PREDICTED: helicase POLQ [Loxodonta africana]	Back alignment and taxonomy information

>gi\|148688331\|gb\|EDL20278.1\| mCG128467, isoform CRA_b [Mus musculus]	Back alignment and taxonomy information

>gi\|326918720\|ref\|XP_003205636.1\| PREDICTED: helicase POLQ-like [Meleagris gallopavo]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		693
UNIPROTKB\|F1NYH9		995	HELQ "Uncharacterized protein"	0.963	0.671	0.351	5.1e-106
MGI\|MGI:2176740		1069	Helq "helicase, POLQ-like" [Mu	0.958	0.621	0.356	1.8e-103
UNIPROTKB\|Q8TDG4		1101	HELQ "Helicase POLQ-like" [Hom	0.962	0.605	0.356	2.9e-103
ZFIN\|ZDB-GENE-060503-421		1010	helq "helicase, POLQ-like" [Da	0.961	0.659	0.360	6e-103
FB\|FBgn0002899		1051	mus301 "mutagen-sensitive 301"	0.587	0.387	0.396	6.3e-103
UNIPROTKB\|E2RST3		1106	HELQ "Uncharacterized protein"	0.963	0.603	0.352	1.4e-101
UNIPROTKB\|J9P160		1072	HELQ "Uncharacterized protein"	0.963	0.623	0.352	1.4e-101
UNIPROTKB\|F1RVE2		1103	HELQ "Uncharacterized protein"	0.966	0.607	0.351	1.8e-101
WB\|WBGene00021905		923	helq-1 [Caenorhabditis elegans	0.958	0.719	0.300	2.4e-83
UNIPROTKB\|E3W980		1034	HELQ "Helicase POLQ-like" [Hom	0.865	0.580	0.334	3.6e-82

UNIPROTKB\|F1NYH9 HELQ "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

 Score = 1049 (374.3 bits), Expect = 5.1e-106, P = 5.1e-106
 Identities = 248/705 (35%), Positives = 392/705 (55%)

Query:     1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQE 60
             +V EK   L+    E  F +EEYAG KG++PP KR++ KKS+YI TIEKG  L+ SLI+ 
Sbjct:   300 IVQEKVWGLSSFGIELGFLVEEYAGSKGRFPPIKRRI-KKSLYIATIEKGHALVNSLIET 358

Query:    61 NRIDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFIE 120
             +RID++GL+V+DE HM+ E  RG +LE  ++K+LY  K+  +  MSAT+ N+  L  F++
Sbjct:   359 DRIDDLGLVVVDELHMIGEGSRGAVLEMTLAKILYASKNTHVVGMSATLNNVGDLQKFLQ 418

Query:   121 GITYVENSRPTKHSEYVTVDKRVFQSFDGKS---LTEIYADNLDYS--LTGSGPDAVLHL 175
                Y +N RP +  EY+ +   +++  D K+    T     N  YS  L  + PD ++ L
Sbjct:   419 AEYYTKNFRPVELKEYIKIRDTIYE-VDSKAENGFTFSRLLNFKYSSSLEKADPDHIVAL 477

Query:   176 VQGNL---MVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLST 232
             V   +     LIFC +K  C N+A  +        + ++++EK+DLI+ LK+  +G +  
Sbjct:   478 VTEVIPKYSCLIFCPTKKNCENVATMVCKYLNKEFRAHREKEKQDLIKNLKDIGNGSICP 537

Query:   233 NLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSY 292
              L + I +GVAYHH+ LT  ER+ IEEAY  G L ++ CT+TLAAGVNLPA+RVI+R  Y
Sbjct:   538 VLRQTIPFGVAYHHSGLTNDERKSIEEAYSRGVLCLLACTATLAAGVNLPARRVILRAPY 597

Query:   293 VGRDFISLNMYKQMVGRAGRTGLQESGESIMLCKTMQDFLRFSSMMNAGPEPISSHMDPP 352
             V  +F+  N YKQM+GRAGR G+  +GESI++ +     L    ++ +  E   S++ P 
Sbjct:   598 VASEFLKKNQYKQMIGRAGRAGIDNAGESILVVQEKDKHL-VRDLITSPLENCYSNLLPE 656

Query:   353 T---LVDLILEVVAANLCSSLEDVKTLIKHTLFYQLKSPEDQQTFLETTLSEIVASLLAS 409
                 +  L+L +V   +  + E+V + + HTL       + Q    E +LSEIV   L +
Sbjct:   657 ITKGMQYLLLSLVGLKIAVTQEEVYSFMCHTLL----GVQQQLLLKEKSLSEIVRDELEN 712

Query:   410 -------KGTMLTMNEAGHLSLTSIAKAAVQAGLSHDVCLIIYSDLLHNKLNFCLLNSLH 462
                    KG ++  N    L++T + KA  +  +    C ++Y +L        L +SLH
Sbjct:   713 LIEKGLLKGKIMDQNSKSTLTVTLLGKATYKGSIDVSYCNLLYKELRKGLEGLVLESSLH 772

Query:   463 MLFLVIPLEY--RIPSDGILLSRSKVYDRYTKFHPQTLRVAEALGVTENLVALNVTGKL- 519
             +L+L  P +       D ++  R     ++ +      +VA+ +GV E+ +A   +G+  
Sbjct:   773 LLYLATPYDMVSNCSPDWMIYLR-----QFNQLSSAEQKVADMVGVPESFIAKKASGQAI 827

Query:   520 -KDEKKALLCRFFHACILYDVLNFDNHQKVAKMYGIQNSHLQNFLNVTSYFASKVYRFCE 578
              K+     + R + + +LY +L   N   V++ + +   ++QN L   + FAS +  FCE
Sbjct:   828 RKNVDSTAVNRLYLSFVLYALLKETNVWSVSEKFNMSRGYVQNLLTSAASFASCILHFCE 887

Query:   579 ELPELWCYKQLLTDLPQTLMYCRAPNLRALMDLPGVKIGRARQLLNAGYSSLELIARADA 638
             EL E W YK LLT+L + L YC    L  LM++ GV   RA+QL NAGY +L  +A A+ 
Sbjct:   888 ELEEFWVYKALLTELTKRLTYCVKTELIPLMEVAGVLEARAKQLYNAGYKTLAHLANANP 947

Query:   639 KEMVAKIRHLPLRSARNLISAAKLHFITKMDKVEAMKNLIQNLQK 683
             + +V  I HL  R A+ ++S+AK+      +K EA++  ++ L K
Sbjct:   948 ETLVKTIEHLSRRQAKQMVSSAKMLL---SEKAEALQEEVEELLK 989

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

MGI\|MGI:2176740 Helq "helicase, POLQ-like" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|Q8TDG4 HELQ "Helicase POLQ-like" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-060503-421 helq "helicase, POLQ-like" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

FB\|FBgn0002899 mus301 "mutagen-sensitive 301" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

UNIPROTKB\|E2RST3 HELQ "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|J9P160 HELQ "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|F1RVE2 HELQ "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

WB\|WBGene00021905 helq-1 [Caenorhabditis elegans (taxid:6239)]	Back alignment and assigned GO terms

UNIPROTKB\|E3W980 HELQ "Helicase POLQ-like" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A8MB76	HELS_CALMQ	3, ., 6, ., 4, ., -	0.2599	0.9018	0.8267	yes	N/A
Q2VPA6	HELQ_MOUSE	3, ., 6, ., 4, ., 1, 2	0.3508	0.9624	0.6239	yes	N/A
O59025	HELS_PYRHO	3, ., 6, ., 4, ., -	0.2735	0.8282	0.8027	yes	N/A
Q3IU46	HELS_NATPD	3, ., 6, ., 4, ., -	0.2626	0.8686	0.8058	yes	N/A
Q8TDG4	HELQ_HUMAN	3, ., 6, ., 4, ., 1, 2	0.3503	0.9624	0.6058	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Alignment Graph	Length	Definition	E-value
Query		693
COG1204		766	COG1204, COG1204, Superfamily II helicase [General	1e-66
PRK02362		737	PRK02362, PRK02362, ski2-like helicase; Provisiona	3e-55
PRK01172		674	PRK01172, PRK01172, ski2-like helicase; Provisiona	4e-45
PRK00254		720	PRK00254, PRK00254, ski2-like helicase; Provisiona	9e-36
COG1202		830	COG1202, COG1202, Superfamily II helicase, archaea	1e-22
COG4581		1041	COG4581, COG4581, Superfamily II RNA helicase [DNA	8e-21
smart00490		82	smart00490, HELICc, helicase superfamily c-termina	6e-15
pfam00271		78	pfam00271, Helicase_C, Helicase conserved C-termin	2e-12
cd00079		131	cd00079, HELICc, Helicase superfamily c-terminal d	2e-11
TIGR04121		803	TIGR04121, DEXH_lig_assoc, DEXH box helicase, DNA	6e-08
COG0514		590	COG0514, RecQ, Superfamily II DNA helicase [DNA re	2e-07
COG0513		513	COG0513, SrmB, Superfamily II DNA and RNA helicase	1e-06
PLN03137		1195	PLN03137, PLN03137, ATP-dependent DNA helicase; Q4	1e-06
COG1205		851	COG1205, COG1205, Distinct helicase family with a	1e-05
smart00487		201	smart00487, DEXDc, DEAD-like helicases superfamily	2e-05
pfam00270		169	pfam00270, DEAD, DEAD/DEAH box helicase	5e-05
PRK11057		607	PRK11057, PRK11057, ATP-dependent DNA helicase Rec	3e-04
TIGR00614		470	TIGR00614, recQ_fam, ATP-dependent DNA helicase, R	6e-04
cd00046		144	cd00046, DEXDc, DEAD-like helicases superfamily	7e-04
COG1201		814	COG1201, Lhr, Lhr-like helicases [General function	8e-04
PRK04301		317	PRK04301, radA, DNA repair and recombination prote	0.002
PRK02362		737	PRK02362, PRK02362, ski2-like helicase; Provisiona	0.003
PRK00254		720	PRK00254, PRK00254, ski2-like helicase; Provisiona	0.003

>gnl\|CDD\|224125 COG1204, COG1204, Superfamily II helicase [General function prediction only]	Back alignment and domain information

 Score =  233 bits (596), Expect = 1e-66
 Identities = 163/685 (23%), Positives = 271/685 (39%), Gaps = 66/685 (9%)

Query: 4   EKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLI---GSLIQE 60
           EKY+  ++     +          G Y     +L +  + + T EK   L     S I+E
Sbjct: 91  EKYEEFSR----LEELGIRVGISTGDYDLDDERLARYDVIVTTPEKLDSLTRKRPSWIEE 146

Query: 61  NRIDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFIE 120
                + L+VIDE H+L +  RGP+LE +V+++  L + I+I  +SAT+ N   ++ ++ 
Sbjct: 147 -----VDLVVIDEIHLLGDRTRGPVLESIVARMRRLNELIRIVGLSATLPNAEEVADWLN 201

Query: 121 GITYVENSRPTKHSEYVTVDKRVFQSFDGKSLTEIYA-DNLDYSLTGSGPDAVLHLVQGN 179
                 + RP      V      F   DGK  T     DNL         + VL  +   
Sbjct: 202 AKLVESDWRPVPLRRGV-PYVGAFLGADGKKKTWPLLIDNLAL-------ELVLESLAEG 253

Query: 180 LMVLIFCSSKIACSNLALRL-QFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECI 238
             VL+F  S+      A +L        + + K    E     L  E        L E +
Sbjct: 254 GQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELV 313

Query: 239 LYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRD-----SYV 293
           L GVA+HHA L   +R+L+E+A+  G ++++  T TLAAGVNLPA+ VII+D        
Sbjct: 314 LRGVAFHHAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKG 373

Query: 294 GRDFISLNMYKQMVGRAGRTGLQESGESIMLCKTM-QDFLRFSSMMNAGPEPISSHM-DP 351
           G   I +    QM GRAGR G  + GE+I+L  +  +        + + PEPI S + D 
Sbjct: 374 GIVDIPVLDVLQMAGRAGRPGYDDYGEAIILATSHDELEYLAELYIQSEPEPIESKLGDE 433

Query: 352 PTLVDLILEVVAANLCSSLEDVKTLIKHTLFYQ--LKSPEDQQTFLETTLSEIVASLLAS 409
             L   +L V++        D  + ++ T FY+    +P+     +     EI+ASL   
Sbjct: 434 LNLRTFLLGVISV------GDAVSWLELTDFYERTFYNPQTYGEGMLR--EEILASLRYL 485

Query: 410 KGTMLTMNEA-GHLSLTSIAKAAVQAGLSHDVCLIIYSDLLHNKLNFCLLNSLHMLFLVI 468
           +   L ++     L  T + K   +  +  +   I    L    L    +  L+++ L  
Sbjct: 486 EENGLILDADWEALHATELGKLVSRLYIDPESAKIFRDLLAELALEPTEIGLLYLISL-- 543

Query: 469 PLEYRIPSDGILLSRSKVYDRYTKFHPQTLRVAEALGVTENLVALNVTGKLKDEKKALLC 528
                   D + +       R  +     L   E      + +      +L  E   LL 
Sbjct: 544 ------TPDLMPIKL-----RERESSELVLDELEEQS---DYLLGERLDELAVEYNLLLQ 589

Query: 529 RFFHACILYD-VLNFDNHQKVAKMYGIQNSHLQNFLNVTSYFASKVYRFC---EELPELW 584
               A  L D +   D   ++   YG+    L        + ++ +       E L ++ 
Sbjct: 590 ALKTAARLLDWINEAD-EDEILNAYGVAPGDLLRIAETAEWLSADLLALGKAAERLAKIL 648

Query: 585 CYKQLLTDLPQTL-----MYCRAPNLRALMDLPGVKIGRARQLLNAGYSSLELIARADAK 639
                +    + L        R+  L  L+++ GV   RAR+L NAGY SLE +      
Sbjct: 649 GLGLHVLRKLEILSLRIEYGVRSEELLELVEIRGVGRVRARKLYNAGYKSLEDLRLIADP 708

Query: 640 EMVAKIRHLPLRSARNLISAAKLHF 664
             +  +  +  R    ++ +     
Sbjct: 709 AELLPLTGIGERLVEAILESLGRDV 733

Length = 766

>gnl\|CDD\|235032 PRK02362, PRK02362, ski2-like helicase; Provisional	Back alignment and domain information

>gnl\|CDD\|100801 PRK01172, PRK01172, ski2-like helicase; Provisional	Back alignment and domain information

>gnl\|CDD\|234702 PRK00254, PRK00254, ski2-like helicase; Provisional	Back alignment and domain information

>gnl\|CDD\|224123 COG1202, COG1202, Superfamily II helicase, archaea-specific [General function prediction only]	Back alignment and domain information

>gnl\|CDD\|226947 COG4581, COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|197757 smart00490, HELICc, helicase superfamily c-terminal domain	Back alignment and domain information

>gnl\|CDD\|201125 pfam00271, Helicase_C, Helicase conserved C-terminal domain	Back alignment and domain information

>gnl|CDD|238034 cd00079, HELICc, Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process

Back alignment and domain information

>gnl\|CDD\|234478 TIGR04121, DEXH_lig_assoc, DEXH box helicase, DNA ligase-associated	Back alignment and domain information

>gnl\|CDD\|223588 COG0514, RecQ, Superfamily II DNA helicase [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|223587 COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>gnl\|CDD\|215597 PLN03137, PLN03137, ATP-dependent DNA helicase; Q4-like; Provisional	Back alignment and domain information

>gnl\|CDD\|224126 COG1205, COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]	Back alignment and domain information

>gnl\|CDD\|214692 smart00487, DEXDc, DEAD-like helicases superfamily	Back alignment and domain information

>gnl\|CDD\|215832 pfam00270, DEAD, DEAD/DEAH box helicase	Back alignment and domain information

>gnl\|CDD\|182933 PRK11057, PRK11057, ATP-dependent DNA helicase RecQ; Provisional	Back alignment and domain information

>gnl\|CDD\|129701 TIGR00614, recQ_fam, ATP-dependent DNA helicase, RecQ family	Back alignment and domain information

>gnl\|CDD\|238005 cd00046, DEXDc, DEAD-like helicases superfamily	Back alignment and domain information

>gnl\|CDD\|224122 COG1201, Lhr, Lhr-like helicases [General function prediction only]	Back alignment and domain information

>gnl\|CDD\|235273 PRK04301, radA, DNA repair and recombination protein RadA; Validated	Back alignment and domain information

>gnl\|CDD\|235032 PRK02362, PRK02362, ski2-like helicase; Provisional	Back alignment and domain information

>gnl\|CDD\|234702 PRK00254, PRK00254, ski2-like helicase; Provisional	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		693
KOG0950\|consensus		1008		100.0
PRK02362		737	ski2-like helicase; Provisional	100.0
PRK00254		720	ski2-like helicase; Provisional	100.0
PRK01172		674	ski2-like helicase; Provisional	100.0
COG1204		766	Superfamily II helicase [General function predicti	100.0
KOG0952\|consensus		1230		100.0
KOG0951\|consensus		1674		100.0
COG1202		830	Superfamily II helicase, archaea-specific [General	100.0
KOG0947\|consensus		1248		100.0
PRK09751		1490	putative ATP-dependent helicase Lhr; Provisional	100.0
PRK13767		876	ATP-dependent helicase; Provisional	100.0
KOG0948\|consensus		1041		100.0
COG1201		814	Lhr Lhr-like helicases [General function predictio	100.0
TIGR03817		742	DECH_helic helicase/secretion neighborhood putativ	100.0
COG4581		1041	Superfamily II RNA helicase [DNA replication, reco	100.0
TIGR01970		819	DEAH_box_HrpB ATP-dependent helicase HrpB. This mo	100.0
PRK11664		812	ATP-dependent RNA helicase HrpB; Provisional	100.0
KOG0331\|consensus		519		100.0
KOG0330\|consensus		476		100.0
PTZ00110		545	helicase; Provisional	100.0
PLN00206		518	DEAD-box ATP-dependent RNA helicase; Provisional	100.0
PRK11776		460	ATP-dependent RNA helicase DbpA; Provisional	100.0
PRK10590		456	ATP-dependent RNA helicase RhlE; Provisional	100.0
PRK11131		1294	ATP-dependent RNA helicase HrpA; Provisional	100.0
PRK11192		434	ATP-dependent RNA helicase SrmB; Provisional	100.0
PRK04837		423	ATP-dependent RNA helicase RhlB; Provisional	100.0
KOG0922\|consensus		674		100.0
PRK04537		572	ATP-dependent RNA helicase RhlB; Provisional	100.0
COG0513		513	SrmB Superfamily II DNA and RNA helicases [DNA rep	100.0
TIGR01967		1283	DEAH_box_HrpA ATP-dependent helicase HrpA. This mo	99.98
KOG0326\|consensus		459		99.98
PTZ00424		401	helicase 45; Provisional	99.98
PRK01297		475	ATP-dependent RNA helicase RhlB; Provisional	99.97
PRK11634		629	ATP-dependent RNA helicase DeaD; Provisional	99.97
KOG0923\|consensus		902		99.97
KOG0328\|consensus		400		99.97
KOG0333\|consensus		673		99.97
COG1643		845	HrpA HrpA-like helicases [DNA replication, recombi	99.97
PLN03137		1195	ATP-dependent DNA helicase; Q4-like; Provisional	99.97
TIGR00614		470	recQ_fam ATP-dependent DNA helicase, RecQ family.	99.97
PRK11057		607	ATP-dependent DNA helicase RecQ; Provisional	99.96
KOG0338\|consensus		691		99.96
KOG0924\|consensus		1042		99.96
KOG0342\|consensus		543		99.96
KOG0343\|consensus		758		99.96
KOG0340\|consensus		442		99.96
TIGR01389		591	recQ ATP-dependent DNA helicase RecQ. The ATP-depe	99.96
KOG0951\|consensus		1674		99.96
KOG0336\|consensus		629		99.96
PHA02653		675	RNA helicase NPH-II; Provisional	99.96
KOG0339\|consensus		731		99.96
KOG0335\|consensus		482		99.95
KOG0345\|consensus		567		99.95
PRK13766		773	Hef nuclease; Provisional	99.95
KOG0332\|consensus		477		99.94
KOG0347\|consensus		731		99.94
COG0514		590	RecQ Superfamily II DNA helicase [DNA replication,	99.94
KOG0341\|consensus		610		99.93
KOG0920\|consensus		924		99.93
COG1111		542	MPH1 ERCC4-like helicases [DNA replication, recomb	99.93
KOG0348\|consensus		708		99.93
KOG4284\|consensus		980		99.93
TIGR00643		630	recG ATP-dependent DNA helicase RecG.	99.93
PRK10917		681	ATP-dependent DNA helicase RecG; Provisional	99.93
TIGR00580		926	mfd transcription-repair coupling factor (mfd). Al	99.93
TIGR02621		844	cas3_GSU0051 CRISPR-associated helicase Cas3, Anae	99.93
PRK10689		1147	transcription-repair coupling factor; Provisional	99.92
TIGR01587		358	cas3_core CRISPR-associated helicase Cas3. This mo	99.92
KOG0350\|consensus		620		99.92
KOG0327\|consensus		397		99.92
KOG0334\|consensus		997		99.91
KOG0925\|consensus		699		99.91
KOG0926\|consensus		1172		99.91
KOG0949\|consensus		1330		99.91
COG1205		851	Distinct helicase family with a unique C-terminal	99.91
KOG0344\|consensus		593		99.89
KOG0346\|consensus		569		99.89
KOG0337\|consensus		529		99.88
PHA02558		501	uvsW UvsW helicase; Provisional	99.88
TIGR03158		357	cas3_cyano CRISPR-associated helicase, Cyano-type.	99.88
KOG0351\|consensus		941		99.86
KOG0354\|consensus		746		99.86
COG1200		677	RecG RecG-like helicase [DNA replication, recombin	99.85
KOG0352\|consensus		641		99.83
TIGR00603		732	rad25 DNA repair helicase rad25. All proteins in t	99.83
PRK09200		790	preprotein translocase subunit SecA; Reviewed	99.82
COG1197		1139	Mfd Transcription-repair coupling factor (superfam	99.82
TIGR03714		762	secA2 accessory Sec system translocase SecA2. Memb	99.81
PRK09694		878	helicase Cas3; Provisional	99.8
TIGR00963		745	secA preprotein translocase, SecA subunit. The pro	99.79
PRK12898		656	secA preprotein translocase subunit SecA; Reviewed	99.79
PRK14701		1638	reverse gyrase; Provisional	99.79
PRK04914		956	ATP-dependent helicase HepA; Validated	99.78
TIGR00595		505	priA primosomal protein N'. All proteins in this f	99.78
PRK09401		1176	reverse gyrase; Reviewed	99.77
KOG0349\|consensus		725		99.77
COG4098		441	comFA Superfamily II DNA/RNA helicase required for	99.76
KOG0329\|consensus		387		99.74
KOG0353\|consensus		695		99.74
PRK05580		679	primosome assembly protein PriA; Validated	99.72
TIGR01054		1171	rgy reverse gyrase. Generally, these gyrases are e	99.7
TIGR00631		655	uvrb excinuclease ABC, B subunit. This family is b	99.65
PRK12906		796	secA preprotein translocase subunit SecA; Reviewed	99.64
COG1061		442	SSL2 DNA or RNA helicases of superfamily II [Trans	99.61
PRK05298		652	excinuclease ABC subunit B; Provisional	99.6
PRK12904		830	preprotein translocase subunit SecA; Reviewed	99.59
KOG4150\|consensus		1034		99.59
PRK13104		896	secA preprotein translocase subunit SecA; Reviewed	99.59
cd00079		131	HELICc Helicase superfamily c-terminal domain; ass	99.57
KOG0953\|consensus		700		99.54
PRK11448		1123	hsdR type I restriction enzyme EcoKI subunit R; Pr	99.54
PF00271		78	Helicase_C: Helicase conserved C-terminal domain;	99.53
smart00611		312	SEC63 Domain of unknown function in Sec63p, Brr2p	99.52
COG1203		733	CRISPR-associated helicase Cas3 [Defense mechanism	99.49
KOG0952\|consensus		1230		99.48
PRK13107		908	preprotein translocase subunit SecA; Reviewed	99.44
PRK12900		1025	secA preprotein translocase subunit SecA; Reviewed	99.37
COG0556		663	UvrB Helicase subunit of the DNA excision repair c	99.36
smart00490		82	HELICc helicase superfamily c-terminal domain.	99.33
PLN03142		1033	Probable chromatin-remodeling complex ATPase chain	99.32
COG1198		730	PriA Primosomal protein N' (replication factor Y)	99.26
KOG0921\|consensus		1282		99.25
TIGR00596		814	rad1 DNA repair protein (rad1). This family is bas	99.23
PF14520		60	HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU	99.13
COG4096		875	HsdR Type I site-specific restriction-modification	99.08
PRK12899		970	secA preprotein translocase subunit SecA; Reviewed	99.06
cd00268		203	DEADc DEAD-box helicases. A diverse family of prot	99.06
PF02889		314	Sec63: Sec63 Brl domain; InterPro: IPR004179 This	99.01
KOG1123\|consensus		776		99.0
TIGR00348		667	hsdR type I site-specific deoxyribonuclease, HsdR	98.99
PF00270		169	DEAD: DEAD/DEAH box helicase; InterPro: IPR011545	98.97
PRK12326		764	preprotein translocase subunit SecA; Reviewed	98.95
PRK13103		913	secA preprotein translocase subunit SecA; Reviewed	98.86
TIGR02562		1110	cas3_yersinia CRISPR-associated helicase Cas3. The	98.85
PRK12903		925	secA preprotein translocase subunit SecA; Reviewed	98.81
KOG0385\|consensus		971		98.81
PRK08609		570	hypothetical protein; Provisional	98.74
PRK12766		232	50S ribosomal protein L32e; Provisional	98.56
COG1110		1187	Reverse gyrase [DNA replication, recombination, an	98.55
TIGR01407		850	dinG_rel DnaQ family exonuclease/DinG family helic	98.5
KOG0387\|consensus		923		98.35
COG1796		326	POL4 DNA polymerase IV (family X) [DNA replication	98.34
CHL00122		870	secA preprotein translocase subunit SecA; Validate	98.33
KOG0384\|consensus		1373		98.32
KOG0389\|consensus		941		98.22
PRK14873		665	primosome assembly protein PriA; Provisional	98.19
cd00141		307	NT_POLXc Nucleotidyltransferase (NT) domain of fam	98.16
COG4889		1518	Predicted helicase [General function prediction on	98.13
PF12826		64	HHH_2: Helix-hairpin-helix motif; PDB: 1X2I_B 1DGS	98.12
cd00046		144	DEXDc DEAD-like helicases superfamily. A diverse f	98.11
PRK12902		939	secA preprotein translocase subunit SecA; Reviewed	98.08
KOG1000\|consensus		689		98.06
PRK12901		1112	secA preprotein translocase subunit SecA; Reviewed	98.05
PRK08074		928	bifunctional ATP-dependent DNA helicase/DNA polyme	98.04
smart00487		201	DEXDc DEAD-like helicases superfamily.	98.02
COG1948		254	MUS81 ERCC4-type nuclease [DNA replication, recomb	98.01
KOG0390\|consensus		776		98.0
COG1199		654	DinG Rad3-related DNA helicases [Transcription / D	97.93
KOG0392\|consensus		1549		97.88
PF02399		824	Herpes_ori_bp: Origin of replication binding prote	97.84
PRK07246		820	bifunctional ATP-dependent DNA helicase/DNA polyme	97.79
PF13307		167	Helicase_C_2: Helicase C-terminal domain; PDB: 4A1	97.78
PRK04301		317	radA DNA repair and recombination protein RadA; Va	97.76
smart00483		334	POLXc DNA polymerase X family. includes vertebrate	97.7
PRK11747		697	dinG ATP-dependent DNA helicase DinG; Provisional	97.69
PRK07956		665	ligA NAD-dependent DNA ligase LigA; Validated	97.64
TIGR01954		50	nusA_Cterm_rpt transcription termination factor Nu	97.62
TIGR00575		652	dnlj DNA ligase, NAD-dependent. The member of this	97.59
PF14229		122	DUF4332: Domain of unknown function (DUF4332)	97.49
PRK14670		574	uvrC excinuclease ABC subunit C; Provisional	97.46
PF11731		93	Cdd1: Pathogenicity locus; InterPro: IPR021725 Cdd	97.44
TIGR00604		705	rad3 DNA repair helicase (rad3). All proteins in t	97.43
TIGR02236		310	recomb_radA DNA repair and recombination protein R	97.43
PRK14666		694	uvrC excinuclease ABC subunit C; Provisional	97.39
PF06862		442	DUF1253: Protein of unknown function (DUF1253); In	97.37
PF10391		52	DNA_pol_lambd_f: Fingers domain of DNA polymerase	97.37
TIGR00084		191	ruvA Holliday junction DNA helicase, RuvA subunit.	97.37
PRK00116		192	ruvA Holliday junction DNA helicase RuvA; Reviewed	97.3
PRK14667		567	uvrC excinuclease ABC subunit C; Provisional	97.27
PRK14672		691	uvrC excinuclease ABC subunit C; Provisional	97.26
PRK07758		95	hypothetical protein; Provisional	97.26
PTZ00035		337	Rad51 protein; Provisional	97.25
PLN03187		344	meiotic recombination protein DMC1 homolog; Provis	97.2
TIGR02238		313	recomb_DMC1 meiotic recombinase Dmc1. This model d	97.19
PRK14351		689	ligA NAD-dependent DNA ligase LigA; Provisional	97.14
PRK14669		624	uvrC excinuclease ABC subunit C; Provisional	96.75
PRK14973		936	DNA topoisomerase I; Provisional	96.71
PRK08097		562	ligB NAD-dependent DNA ligase LigB; Reviewed	96.71
PRK14668		577	uvrC excinuclease ABC subunit C; Provisional	96.7
PRK14605		194	ruvA Holliday junction DNA helicase RuvA; Provisio	96.69
PRK02515		132	psbU photosystem II complex extrinsic protein prec	96.68
TIGR00575		652	dnlj DNA ligase, NAD-dependent. The member of this	96.66
PRK13482		352	DNA integrity scanning protein DisA; Provisional	96.57
PLN03186		342	DNA repair protein RAD51 homolog; Provisional	96.55
TIGR02239		316	recomb_RAD51 DNA repair protein RAD51. This eukary	96.54
PF04851		184	ResIII: Type III restriction enzyme, res subunit;	96.53
TIGR00426		69	competence protein ComEA helix-hairpin-helix repea	96.35
KOG4439\|consensus		901		96.3
PF03118		66	RNA_pol_A_CTD: Bacterial RNA polymerase, alpha cha	96.29
PF00176		299	SNF2_N: SNF2 family N-terminal domain; InterPro: I	96.26
PRK07956		665	ligA NAD-dependent DNA ligase LigA; Validated	96.25
PRK00558		598	uvrC excinuclease ABC subunit C; Validated	96.18
TIGR01259		120	comE comEA protein. This model describes the ComEA	96.17
PF07652		148	Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR	96.15
COG0610		962	Type I site-specific restriction-modification syst	96.14
COG0553		866	HepA Superfamily II DNA/RNA helicases, SNF2 family	95.95
KOG0391\|consensus		1958		95.93
COG0322		581	UvrC Nuclease subunit of the excinuclease complex	95.93
PRK14606		188	ruvA Holliday junction DNA helicase RuvA; Provisio	95.87
PRK14351		689	ligA NAD-dependent DNA ligase LigA; Provisional	95.77
PRK14350		669	ligA NAD-dependent DNA ligase LigA; Provisional	95.69
PRK14602		203	ruvA Holliday junction DNA helicase RuvA; Provisio	95.69
PRK13901		196	ruvA Holliday junction DNA helicase RuvA; Provisio	95.66
COG3743		133	Uncharacterized conserved protein [Function unknow	95.65
TIGR03117		636	cas_csf4 CRISPR-associated DEAD/DEAH-box helicase	95.61
PRK14973		936	DNA topoisomerase I; Provisional	95.59
PF04994		81	TfoX_C: TfoX C-terminal domain; InterPro: IPR00707	95.57
PRK14671		621	uvrC excinuclease ABC subunit C; Provisional	95.53
KOG0388\|consensus		1185		95.46
PRK14603		197	ruvA Holliday junction DNA helicase RuvA; Provisio	95.44
PRK14601		183	ruvA Holliday junction DNA helicase RuvA; Provisio	95.44
PRK14604		195	ruvA Holliday junction DNA helicase RuvA; Provisio	95.43
PF00633		30	HHH: Helix-hairpin-helix motif; InterPro: IPR00044	95.38
COG0653		822	SecA Preprotein translocase subunit SecA (ATPase,	95.36
PRK14600		186	ruvA Holliday junction DNA helicase RuvA; Provisio	95.16
TIGR03491		457	RecB family nuclease, putative, TM0106 family. Mem	95.0
PF04408		102	HA2: Helicase associated domain (HA2); InterPro: I	94.85
COG0272		667	Lig NAD-dependent DNA ligase (contains BRCT domain	94.81
smart00492		141	HELICc3 helicase superfamily c-terminal domain.	94.8
PF00633		30	HHH: Helix-hairpin-helix motif; InterPro: IPR00044	94.78
smart00847		92	HA2 Helicase associated domain (HA2) Add an annota	94.65
COG0632		201	RuvA Holliday junction resolvasome, DNA-binding su	94.39
COG2251		474	Predicted nuclease (RecB family) [General function	94.34
COG1555		149	ComEA DNA uptake protein and related DNA-binding p	93.83
COG0272		667	Lig NAD-dependent DNA ligase (contains BRCT domain	93.75
PF12836		65	HHH_3: Helix-hairpin-helix motif; PDB: 2EDU_A 2OCE	93.53
KOG2841\|consensus		254		93.29
PRK10917		681	ATP-dependent DNA helicase RecG; Provisional	93.09
smart00491		142	HELICc2 helicase superfamily c-terminal domain.	93.08
PRK03352		346	DNA polymerase IV; Validated	93.05
TIGR00595		505	priA primosomal protein N'. All proteins in this f	92.98
PRK03858		396	DNA polymerase IV; Validated	92.96
cd01703		379	PolY_Pol_iota DNA Polymerase iota. Pol iota, also	92.88
PRK05580		679	primosome assembly protein PriA; Validated	92.86
COG0177		211	Nth Predicted EndoIII-related endonuclease [DNA re	92.82
PF14229		122	DUF4332: Domain of unknown function (DUF4332)	92.82
PRK09202		470	nusA transcription elongation factor NusA; Validat	92.7
PRK01216		351	DNA polymerase IV; Validated	92.31
cd01701		404	PolY_Rev1 DNA polymerase Rev1. Rev1 is a translesi	92.23
COG1623		349	Predicted nucleic-acid-binding protein (contains t	91.98
PF11798		32	IMS_HHH: IMS family HHH motif; InterPro: IPR024728	91.81
PRK14873		665	primosome assembly protein PriA; Provisional	91.73
PRK08097		562	ligB NAD-dependent DNA ligase LigB; Reviewed	91.71
TIGR03252		177	uncharacterized HhH-GPD family protein. This model	91.67
PRK03348		454	DNA polymerase IV; Provisional	91.65
PRK14350		669	ligA NAD-dependent DNA ligase LigA; Provisional	91.24
TIGR00194		574	uvrC excinuclease ABC, C subunit. This family cons	91.2
smart00278		26	HhH1 Helix-hairpin-helix DNA-binding motif class 1	90.79
TIGR01448		720	recD_rel helicase, putative, RecD/TraA family. Thi	90.58
KOG1002\|consensus		791		90.52
TIGR00643		630	recG ATP-dependent DNA helicase RecG.	90.38
cd00424		343	PolY Y-family of DNA polymerases. Y-family DNA pol	90.14
PRK02406		343	DNA polymerase IV; Validated	90.03
cd01702		359	PolY_Pol_eta DNA Polymerase eta. Pol eta, also cal	89.92
COG1198		730	PriA Primosomal protein N' (replication factor Y)	89.5
TIGR00580		926	mfd transcription-repair coupling factor (mfd). Al	89.34
KOG2340\|consensus		698		89.19
PF07517		266	SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011	88.85
PF13871		278	Helicase_C_4: Helicase_C-like	88.77
KOG1015\|consensus		1567		88.43
PRK12278		221	50S ribosomal protein L21/unknown domain fusion pr	88.32
COG1110		1187	Reverse gyrase [DNA replication, recombination, an	88.22
cd03586		334	PolY_Pol_IV_kappa DNA Polymerase IV/Kappa. Pol IV,	87.95
PRK12311		326	rpsB 30S ribosomal protein S2/unknown domain fusio	87.94
PRK03609		422	umuC DNA polymerase V subunit UmuC; Reviewed	87.79
PF13872		303	AAA_34: P-loop containing NTP hydrolase pore-1	87.55
cd01700		344	PolY_Pol_V_umuC umuC subunit of DNA Polymerase V.	87.42
PRK14133		347	DNA polymerase IV; Provisional	87.37
PRK02794		419	DNA polymerase IV; Provisional	87.35
KOG2534\|consensus		353		86.98
PRK01810		407	DNA polymerase IV; Validated	86.41
TIGR02027		297	rpoA DNA-directed RNA polymerase, alpha subunit, b	86.24
PTZ00205		571	DNA polymerase kappa; Provisional	86.1
PRK05182		310	DNA-directed RNA polymerase subunit alpha; Provisi	85.75
PRK03103		409	DNA polymerase IV; Reviewed	85.65
PRK10702		211	endonuclease III; Provisional	85.47
smart00478		149	ENDO3c endonuclease III. includes endonuclease III	85.41
PRK10689		1147	transcription-repair coupling factor; Provisional	84.27
PRK00024		224	hypothetical protein; Reviewed	84.03
PRK13910		289	DNA glycosylase MutY; Provisional	83.7
KOG1002\|consensus		791		83.59
KOG2093\|consensus		1016		83.56
PRK13913		218	3-methyladenine DNA glycosylase; Provisional	83.16
PRK14606		188	ruvA Holliday junction DNA helicase RuvA; Provisio	81.85
COG0513		513	SrmB Superfamily II DNA and RNA helicases [DNA rep	81.75
PRK13901		196	ruvA Holliday junction DNA helicase RuvA; Provisio	81.46
CHL00013		327	rpoA RNA polymerase alpha subunit	80.76
TIGR01083		191	nth endonuclease III. This equivalog model identif	80.2
COG0389		354	DinP Nucleotidyltransferase/DNA polymerase involve	80.14
PF00730		108	HhH-GPD: HhH-GPD superfamily base excision DNA rep	80.1

>KOG0950\|consensus	Back alignment and domain information

Probab=100.00  E-value=8.9e-87  Score=728.89  Aligned_cols=644  Identities=33%  Similarity=0.510  Sum_probs=544.0

Q ss_pred             hhhHHHHHHHHhhhhCcEEEEeeccCCCCCccccccCCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccccCCCC
Q psy15878          2 VHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEPQ   81 (693)
Q Consensus         2 ~~e~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~l~d~~   81 (693)
                      ++|+...+..++..+|++|.+|+|..+   +.... +.-++.|||.||.+.++++++..+.+..+++|||||.|+++|.+
T Consensus       282 v~Ek~~~l~~~~~~~G~~ve~y~g~~~---p~~~~-k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~  357 (1008)
T KOG0950|consen  282 VQEKISALSPFSIDLGFPVEEYAGRFP---PEKRR-KRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKG  357 (1008)
T ss_pred             hHHHHhhhhhhccccCCcchhhcccCC---CCCcc-cceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccc
Confidence            789999999999999999999997644   33332 66799999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHhccCCC--ceEEEEcCcCCCHHHHHHhhcCCCccCCCCcccceeeEEeCceeeeecCCCCchhhhccc
Q psy15878         82 RGPILECVVSKVLYLKKS--IQIFAMSATIGNINALSTFIEGITYVENSRPTKHSEYVTVDKRVFQSFDGKSLTEIYADN  159 (693)
Q Consensus        82 rg~~le~il~~l~~~~~~--~qii~lSATl~n~~~la~~l~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (693)
                      ||.++|.+++++.+.+..  .|+||||||++|...++.||++.+|...+|||++.++++++..+|....   ....+.+.
T Consensus       358 rg~~lE~~l~k~~y~~~~~~~~iIGMSATi~N~~lL~~~L~A~~y~t~fRPv~L~E~ik~G~~i~~~~r---~~~lr~ia  434 (1008)
T KOG0950|consen  358 RGAILELLLAKILYENLETSVQIIGMSATIPNNSLLQDWLDAFVYTTRFRPVPLKEYIKPGSLIYESSR---NKVLREIA  434 (1008)
T ss_pred             cchHHHHHHHHHHHhccccceeEeeeecccCChHHHHHHhhhhheecccCcccchhccCCCcccccchh---hHHHHHhh
Confidence            999999999999877554  5699999999999999999999999999999999999999888887632   12222222


Q ss_pred             ccccC--CCCChhhHHHHHh----cCCceEEEeCChHHHHHHHHHhhhccCCCCcccc----hh--hHHHHHHHHHhccC
Q psy15878        160 LDYSL--TGSGPDAVLHLVQ----GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYK----KQ--EKEDLIEALKEEND  227 (693)
Q Consensus       160 ~~~~~--~~~~~~~l~~l~~----~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~----~~--~~~~~~~~l~~~~~  227 (693)
                      ..+..  ...++|.++.++.    ++.++|||||+|+.|+.+|..+..  .+ |....    ..  +.....+.++ ..+
T Consensus       435 ~l~~~~~g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~--~v-pk~~~~e~~~~~~~~~s~s~~lr-~~~  510 (1008)
T KOG0950|consen  435 NLYSSNLGDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAK--KV-PKHIKSEKRLGLWELLSISNLLR-RIP  510 (1008)
T ss_pred             hhhhhhcccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHH--Hh-hHhhhhhhhhhHHHHHHHHhHhh-cCC
Confidence            11222  3345577777776    777899999999999999988877  44 32221    11  2222233333 344


Q ss_pred             CccchHHHHHHhhceEEEcCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEecCcCCCccCCHHHHHHHh
Q psy15878        228 GKLSTNLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMV  307 (693)
Q Consensus       228 ~~~~~~L~~~~~~gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Qr~  307 (693)
                      +.+++.|+.+++.|++|||+|++.++|+.|+.+|++|.+.|++||+|+++|||+|+.+|||..++.|+++.+..+|+||+
T Consensus       511 ~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~  590 (1008)
T KOG0950|consen  511 GILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMV  590 (1008)
T ss_pred             cccchHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhh
Confidence            56899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccCCCCCCCCCcEEEEecccccHHHHHHHHhCCCCcccccCCc---hhHHHHHHHHHHhcccCCHHHHHHHHHHhhhhh
Q psy15878        308 GRAGRTGLQESGESIMLCKTMQDFLRFSSMMNAGPEPISSHMDP---PTLVDLILEVVAANLCSSLEDVKTLIKHTLFYQ  384 (693)
Q Consensus       308 GRaGR~g~d~~G~~i~l~~~~~~~~~~~~~l~~~~~~i~s~l~~---~~l~~~il~~i~~~~~~~~~~~~~~l~~t~~~~  384 (693)
                      |||||.|.|..|.+++++.+. +...+.+++..+.+++.|++.+   ..+...++.+|+.+.+.+.+|+..|..+|+++.
T Consensus       591 GRAGR~gidT~GdsiLI~k~~-e~~~~~~lv~~~~~~~~S~l~~e~~g~~~~~ilsvI~~~ia~t~~di~~~va~tl~s~  669 (1008)
T KOG0950|consen  591 GRAGRTGIDTLGDSILIIKSS-EKKRVRELVNSPLKPLNSCLSNEVNGPILMAILSLISLKIAETAEDILHFVAVTLLSA  669 (1008)
T ss_pred             hhhhhcccccCcceEEEeecc-chhHHHHHHhccccccccccccccccccceeehhhhcchhhhhHHHHHHHHHHhhhhc
Confidence            999999999999999999999 8888889999999999999973   233468999999999999999999999999998


Q ss_pred             ccCchhhhhh---hhhhHH-HHHH-HHHhhcCCeEee-ccCccEEecHHHHHHHHcCCChhHHHHHHHhhhhhhcccccc
Q psy15878        385 LKSPEDQQTF---LETTLS-EIVA-SLLASKGTMLTM-NEAGHLSLTSIAKAAVQAGLSHDVCLIIYSDLLHNKLNFCLL  458 (693)
Q Consensus       385 ~~~p~~~~~~---~~~~~~-~~~l-~~L~~~g~i~~~-~~~~~~~~T~lG~~~~~~~l~~~~~~~~~~~l~~~~~~~~l~  458 (693)
                      ...|.+....   ....+. .... ..+....++... .+....-+|++|++....+++|..+..++.+|+++.+.+++.
T Consensus       670 q~~~~~~~~~le~~s~ql~~~~~~~d~~l~~d~i~~~~~~~~~~~~t~Lg~a~f~~~~~~~~a~~l~~~L~~~~~~~vle  749 (1008)
T KOG0950|consen  670 QEKPENVREQLEMESDQLVINDFKSDQLLEKDFIYKKQIENLRENITRLGRACFNAGSDPEVANILFADLKKSLPQLVLE  749 (1008)
T ss_pred             ccchhhhhhcccchhhhhccchhhHHHHHHHHHHHhHHHHhhhhhhhhhhhhhhcccCChhhhHHHHHHHHHhhhccccc
Confidence            5444443221   011110 0111 234444455421 111122399999999999999999999999999999999999


Q ss_pred             ccccEEEeeccCCccCCCCCccccccchhhHhhh---cChhHHHHHHHcCccHHHHHHHhcC-Cchh-hHHHHHHHHHHH
Q psy15878        459 NSLHMLFLVIPLEYRIPSDGILLSRSKVYDRYTK---FHPQTLRVAEALGVTENLVALNVTG-KLKD-EKKALLCRFFHA  533 (693)
Q Consensus       459 ~~l~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~gi~~~~~~~~~~~-~~~~-~~~~~~~~~~~a  533 (693)
                      +.+|+||++||+.     ..  ...++|..||..   |++.++++++.+|+.+.|+.+..+| ...+ .+++++.|||.+
T Consensus       750 ~~lh~lylvtP~~-----~~--~~~~dwli~f~i~~~L~~~~~~~~~~~G~~e~fi~~~~~gqs~~~~~~~~~~~r~y~~  822 (1008)
T KOG0950|consen  750 SSLHLLYLVTPYL-----EV--MNDIDWLIYFQIYHTLPSPEQKLAKLLGVIESFIEKCVSGQSVRNLQNVQKRKRLYVA  822 (1008)
T ss_pred             cccceeeeecchH-----hh--cccccHHHHHHHHhcCCcHHHHHHhhhchHHHHHHHhhhccccccccchhHHHHHHHH
Confidence            9999999999994     11  226899877544   9999999999999999999999999 3322 456788999999


Q ss_pred             HHHHHHhcCCCHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHhhhCcchhhhHHHhhhHHHHhhccCccchhhhhcCCC
Q psy15878        534 CILYDVLNFDNHQKVAKMYGIQNSHLQNFLNVTSYFASKVYRFCEELPELWCYKQLLTDLPQTLMYCRAPNLRALMDLPG  613 (693)
Q Consensus       534 ~~l~~~i~e~~~~~i~~~y~v~~g~~~~l~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~rl~~g~~~el~~l~~i~g  613 (693)
                      ++|+++|+|.|+.+|+++|++.||++|+++++++.+|++|+.||++++|+ .+..++..+..||.+|+.+||.+||++|+
T Consensus       823 l~L~~li~espi~~V~~kYk~~rg~lqall~~a~~~a~~It~Fce~l~w~-~~~~l~~~~~~rl~~g~~~eL~~Lmrv~~  901 (1008)
T KOG0950|consen  823 LALQKLINESPIRTVAEKYKVERGRLQALLSNASSFASLITFFCESIQWF-PLRALLSEFYGRLSFGGHAELIPLMRVPD  901 (1008)
T ss_pred             HHHHHHHhhCcHHHHHHHhCchHHHHHHHHhcchhHHHHHHHHHHHhhhc-chHHHHHHHHHHHhccchhhhhhhhcCch
Confidence            99999999999999999999999999999999999999999999999943 79999999999999999999999999999


Q ss_pred             CCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhc-CCCHHHHHHHHHHHHhhhh
Q psy15878        614 VKIGRARQLLNAGYSSLELIARADAKEMVAKIR-HLPLRSARNLISAAKLHFI  665 (693)
Q Consensus       614 i~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~-~~~~~~a~~i~~~a~~~~~  665 (693)
                      +...|||+||.|||+|+.+|++|+|.++++.++ .+..++|..|+.+++..+.
T Consensus       902 ~~~~RAr~lf~Agf~tv~~iA~a~p~klvkel~~si~~~~a~~i~~s~~~~l~  954 (1008)
T KOG0950|consen  902 VKAERARQLFKAGFTSVGSIANATPEKLVKELPISISMKQATQIVASAKDELR  954 (1008)
T ss_pred             hHHHHHHHHHHhhccchHHHhcCChHHHHHHhhccccHHHhhhHHhhhhHHHH
Confidence            999999999999999999999999999999998 6999999999999965554

>PRK02362 ski2-like helicase; Provisional	Back alignment and domain information

>PRK00254 ski2-like helicase; Provisional	Back alignment and domain information

>PRK01172 ski2-like helicase; Provisional	Back alignment and domain information

>COG1204 Superfamily II helicase [General function prediction only]	Back alignment and domain information

>KOG0952\|consensus	Back alignment and domain information

>KOG0951\|consensus	Back alignment and domain information

>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]	Back alignment and domain information

>KOG0947\|consensus	Back alignment and domain information

>PRK09751 putative ATP-dependent helicase Lhr; Provisional	Back alignment and domain information

>PRK13767 ATP-dependent helicase; Provisional	Back alignment and domain information

>KOG0948\|consensus	Back alignment and domain information

>COG1201 Lhr Lhr-like helicases [General function prediction only]	Back alignment and domain information

>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase	Back alignment and domain information

>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]	Back alignment and domain information

>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB	Back alignment and domain information

>PRK11664 ATP-dependent RNA helicase HrpB; Provisional	Back alignment and domain information

>KOG0331\|consensus	Back alignment and domain information

>KOG0330\|consensus	Back alignment and domain information

>PTZ00110 helicase; Provisional	Back alignment and domain information

>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional	Back alignment and domain information

>PRK11776 ATP-dependent RNA helicase DbpA; Provisional	Back alignment and domain information

>PRK10590 ATP-dependent RNA helicase RhlE; Provisional	Back alignment and domain information

>PRK11131 ATP-dependent RNA helicase HrpA; Provisional	Back alignment and domain information

>PRK11192 ATP-dependent RNA helicase SrmB; Provisional	Back alignment and domain information

>PRK04837 ATP-dependent RNA helicase RhlB; Provisional	Back alignment and domain information

>KOG0922\|consensus	Back alignment and domain information

>PRK04537 ATP-dependent RNA helicase RhlB; Provisional	Back alignment and domain information

>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA	Back alignment and domain information

>KOG0326\|consensus	Back alignment and domain information

>PTZ00424 helicase 45; Provisional	Back alignment and domain information

>PRK01297 ATP-dependent RNA helicase RhlB; Provisional	Back alignment and domain information

>PRK11634 ATP-dependent RNA helicase DeaD; Provisional	Back alignment and domain information

>KOG0923\|consensus	Back alignment and domain information

>KOG0328\|consensus	Back alignment and domain information

>KOG0333\|consensus	Back alignment and domain information

>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]	Back alignment and domain information

>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional	Back alignment and domain information

>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family	Back alignment and domain information

>PRK11057 ATP-dependent DNA helicase RecQ; Provisional	Back alignment and domain information

>KOG0338\|consensus	Back alignment and domain information

>KOG0924\|consensus	Back alignment and domain information

>KOG0342\|consensus	Back alignment and domain information

>KOG0343\|consensus	Back alignment and domain information

>KOG0340\|consensus	Back alignment and domain information

>TIGR01389 recQ ATP-dependent DNA helicase RecQ	Back alignment and domain information

>KOG0951\|consensus	Back alignment and domain information

>KOG0336\|consensus	Back alignment and domain information

>PHA02653 RNA helicase NPH-II; Provisional	Back alignment and domain information

>KOG0339\|consensus	Back alignment and domain information

>KOG0335\|consensus	Back alignment and domain information

>KOG0345\|consensus	Back alignment and domain information

>PRK13766 Hef nuclease; Provisional	Back alignment and domain information

>KOG0332\|consensus	Back alignment and domain information

>KOG0347\|consensus	Back alignment and domain information

>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]	Back alignment and domain information

>KOG0341\|consensus	Back alignment and domain information

>KOG0920\|consensus	Back alignment and domain information

>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]	Back alignment and domain information

>KOG0348\|consensus	Back alignment and domain information

>KOG4284\|consensus	Back alignment and domain information

>TIGR00643 recG ATP-dependent DNA helicase RecG	Back alignment and domain information

>PRK10917 ATP-dependent DNA helicase RecG; Provisional	Back alignment and domain information

>TIGR00580 mfd transcription-repair coupling factor (mfd)	Back alignment and domain information

>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype	Back alignment and domain information

>PRK10689 transcription-repair coupling factor; Provisional	Back alignment and domain information

>TIGR01587 cas3_core CRISPR-associated helicase Cas3	Back alignment and domain information

>KOG0350\|consensus	Back alignment and domain information

>KOG0327\|consensus	Back alignment and domain information

>KOG0334\|consensus	Back alignment and domain information

>KOG0925\|consensus	Back alignment and domain information

>KOG0926\|consensus	Back alignment and domain information

>KOG0949\|consensus	Back alignment and domain information

>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]	Back alignment and domain information

>KOG0344\|consensus	Back alignment and domain information

>KOG0346\|consensus	Back alignment and domain information

>KOG0337\|consensus	Back alignment and domain information

>PHA02558 uvsW UvsW helicase; Provisional	Back alignment and domain information

>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type	Back alignment and domain information

>KOG0351\|consensus	Back alignment and domain information

>KOG0354\|consensus	Back alignment and domain information

>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]	Back alignment and domain information

>KOG0352\|consensus	Back alignment and domain information

>TIGR00603 rad25 DNA repair helicase rad25	Back alignment and domain information

>PRK09200 preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]	Back alignment and domain information

>TIGR03714 secA2 accessory Sec system translocase SecA2	Back alignment and domain information

>PRK09694 helicase Cas3; Provisional	Back alignment and domain information

>TIGR00963 secA preprotein translocase, SecA subunit	Back alignment and domain information

>PRK12898 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PRK14701 reverse gyrase; Provisional	Back alignment and domain information

>PRK04914 ATP-dependent helicase HepA; Validated	Back alignment and domain information

>TIGR00595 priA primosomal protein N'	Back alignment and domain information

>PRK09401 reverse gyrase; Reviewed	Back alignment and domain information

>KOG0349\|consensus	Back alignment and domain information

>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]	Back alignment and domain information

>KOG0329\|consensus	Back alignment and domain information

>KOG0353\|consensus	Back alignment and domain information

>PRK05580 primosome assembly protein PriA; Validated	Back alignment and domain information

>TIGR01054 rgy reverse gyrase	Back alignment and domain information

>TIGR00631 uvrb excinuclease ABC, B subunit	Back alignment and domain information

>PRK12906 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]	Back alignment and domain information

>PRK05298 excinuclease ABC subunit B; Provisional	Back alignment and domain information

>PRK12904 preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>KOG4150\|consensus	Back alignment and domain information

>PRK13104 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process

Back alignment and domain information

>KOG0953\|consensus	Back alignment and domain information

>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional	Back alignment and domain information

>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins	Back alignment and domain information

>smart00611 SEC63 Domain of unknown function in Sec63p, Brr2p and other proteins	Back alignment and domain information

>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]	Back alignment and domain information

>KOG0952\|consensus	Back alignment and domain information

>PRK13107 preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PRK12900 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]	Back alignment and domain information

>smart00490 HELICc helicase superfamily c-terminal domain	Back alignment and domain information

>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional	Back alignment and domain information

>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]	Back alignment and domain information

>KOG0921\|consensus	Back alignment and domain information

>TIGR00596 rad1 DNA repair protein (rad1)	Back alignment and domain information

>PF14520 HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU6_A 3AU2_A 3B0X_A 3B0Y_A 1SZP_C 3LDA_A 1WCN_A 2JZB_B 2ZTC_A	Back alignment and domain information

>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]	Back alignment and domain information

>PRK12899 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>cd00268 DEADc DEAD-box helicases	Back alignment and domain information

>PF02889 Sec63: Sec63 Brl domain; InterPro: IPR004179 This domain was named after the yeast Sec63 (or NPL1) (also known as the Brl domain) protein in which it was found	Back alignment and domain information

>KOG1123\|consensus	Back alignment and domain information

>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family	Back alignment and domain information

>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases	Back alignment and domain information

>PRK12326 preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PRK13103 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3	Back alignment and domain information

>PRK12903 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>KOG0385\|consensus	Back alignment and domain information

>PRK08609 hypothetical protein; Provisional	Back alignment and domain information

>PRK12766 50S ribosomal protein L32e; Provisional	Back alignment and domain information

>COG1110 Reverse gyrase [DNA replication, recombination, and repair]	Back alignment and domain information

>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative	Back alignment and domain information

>KOG0387\|consensus	Back alignment and domain information

>COG1796 POL4 DNA polymerase IV (family X) [DNA replication, recombination, and repair]	Back alignment and domain information

>CHL00122 secA preprotein translocase subunit SecA; Validated	Back alignment and domain information

>KOG0384\|consensus	Back alignment and domain information

>KOG0389\|consensus	Back alignment and domain information

>PRK14873 primosome assembly protein PriA; Provisional	Back alignment and domain information

>cd00141 NT_POLXc Nucleotidyltransferase (NT) domain of family X DNA Polymerases	Back alignment and domain information

>COG4889 Predicted helicase [General function prediction only]	Back alignment and domain information

>PF12826 HHH_2: Helix-hairpin-helix motif; PDB: 1X2I_B 1DGS_A 1V9P_B	Back alignment and domain information

>cd00046 DEXDc DEAD-like helicases superfamily	Back alignment and domain information

>PRK12902 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>KOG1000\|consensus	Back alignment and domain information

>PRK12901 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated	Back alignment and domain information

>smart00487 DEXDc DEAD-like helicases superfamily	Back alignment and domain information

>COG1948 MUS81 ERCC4-type nuclease [DNA replication, recombination, and repair]	Back alignment and domain information

>KOG0390\|consensus	Back alignment and domain information

>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]	Back alignment and domain information

>KOG0392\|consensus	Back alignment and domain information

>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein	Back alignment and domain information

>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated	Back alignment and domain information

>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A	Back alignment and domain information

>PRK04301 radA DNA repair and recombination protein RadA; Validated	Back alignment and domain information

>smart00483 POLXc DNA polymerase X family	Back alignment and domain information

>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional	Back alignment and domain information

>PRK07956 ligA NAD-dependent DNA ligase LigA; Validated	Back alignment and domain information

>TIGR01954 nusA_Cterm_rpt transcription termination factor NusA, C-terminal duplication	Back alignment and domain information

>TIGR00575 dnlj DNA ligase, NAD-dependent	Back alignment and domain information

>PF14229 DUF4332: Domain of unknown function (DUF4332)	Back alignment and domain information

>PRK14670 uvrC excinuclease ABC subunit C; Provisional	Back alignment and domain information

>PF11731 Cdd1: Pathogenicity locus; InterPro: IPR021725 Cdd1 is expressed as part of the pathogenicity locus operon in several different orders of bacteria []	Back alignment and domain information

>TIGR00604 rad3 DNA repair helicase (rad3)	Back alignment and domain information

>TIGR02236 recomb_radA DNA repair and recombination protein RadA	Back alignment and domain information

>PRK14666 uvrC excinuclease ABC subunit C; Provisional	Back alignment and domain information

>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ]	Back alignment and domain information

>PF10391 DNA_pol_lambd_f: Fingers domain of DNA polymerase lambda; InterPro: IPR018944 DNA polymerases catalyse the addition of dNMPs onto the 3-prime ends of DNA chains	Back alignment and domain information

>TIGR00084 ruvA Holliday junction DNA helicase, RuvA subunit	Back alignment and domain information

>PRK00116 ruvA Holliday junction DNA helicase RuvA; Reviewed	Back alignment and domain information

>PRK14667 uvrC excinuclease ABC subunit C; Provisional	Back alignment and domain information

>PRK14672 uvrC excinuclease ABC subunit C; Provisional	Back alignment and domain information

>PRK07758 hypothetical protein; Provisional	Back alignment and domain information

>PTZ00035 Rad51 protein; Provisional	Back alignment and domain information

>PLN03187 meiotic recombination protein DMC1 homolog; Provisional	Back alignment and domain information

>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1	Back alignment and domain information

>PRK14351 ligA NAD-dependent DNA ligase LigA; Provisional	Back alignment and domain information

>PRK14669 uvrC excinuclease ABC subunit C; Provisional	Back alignment and domain information

>PRK14973 DNA topoisomerase I; Provisional	Back alignment and domain information

>PRK08097 ligB NAD-dependent DNA ligase LigB; Reviewed	Back alignment and domain information

>PRK14668 uvrC excinuclease ABC subunit C; Provisional	Back alignment and domain information

>PRK14605 ruvA Holliday junction DNA helicase RuvA; Provisional	Back alignment and domain information

>PRK02515 psbU photosystem II complex extrinsic protein precursor U; Provisional	Back alignment and domain information

>TIGR00575 dnlj DNA ligase, NAD-dependent	Back alignment and domain information

>PRK13482 DNA integrity scanning protein DisA; Provisional	Back alignment and domain information

>PLN03186 DNA repair protein RAD51 homolog; Provisional	Back alignment and domain information

>TIGR02239 recomb_RAD51 DNA repair protein RAD51	Back alignment and domain information

>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3	Back alignment and domain information

>TIGR00426 competence protein ComEA helix-hairpin-helix repeat region	Back alignment and domain information

>KOG4439\|consensus	Back alignment and domain information

>PF03118 RNA_pol_A_CTD: Bacterial RNA polymerase, alpha chain C terminal domain; InterPro: IPR011260 The core of the bacterial RNA polymerase (RNAP) consists of four subunits, two alpha, a beta and a beta', which are conserved from bacteria to mammals	Back alignment and domain information

>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e	Back alignment and domain information

>PRK07956 ligA NAD-dependent DNA ligase LigA; Validated	Back alignment and domain information

>PRK00558 uvrC excinuclease ABC subunit C; Validated	Back alignment and domain information

>TIGR01259 comE comEA protein	Back alignment and domain information

>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain	Back alignment and domain information

>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]	Back alignment and domain information

>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]	Back alignment and domain information

>KOG0391\|consensus	Back alignment and domain information

>COG0322 UvrC Nuclease subunit of the excinuclease complex [DNA replication, recombination, and repair]	Back alignment and domain information

>PRK14606 ruvA Holliday junction DNA helicase RuvA; Provisional	Back alignment and domain information

>PRK14351 ligA NAD-dependent DNA ligase LigA; Provisional	Back alignment and domain information

>PRK14350 ligA NAD-dependent DNA ligase LigA; Provisional	Back alignment and domain information

>PRK14602 ruvA Holliday junction DNA helicase RuvA; Provisional	Back alignment and domain information

>PRK13901 ruvA Holliday junction DNA helicase RuvA; Provisional	Back alignment and domain information

>COG3743 Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4	Back alignment and domain information

>PRK14973 DNA topoisomerase I; Provisional	Back alignment and domain information

>PF04994 TfoX_C: TfoX C-terminal domain; InterPro: IPR007077 This domain is found in a number of bacterial proteins including the TfoX gene product of Haemophilus influenzae	Back alignment and domain information

>PRK14671 uvrC excinuclease ABC subunit C; Provisional	Back alignment and domain information

>KOG0388\|consensus	Back alignment and domain information

>PRK14603 ruvA Holliday junction DNA helicase RuvA; Provisional	Back alignment and domain information

>PRK14601 ruvA Holliday junction DNA helicase RuvA; Provisional	Back alignment and domain information

>PRK14604 ruvA Holliday junction DNA helicase RuvA; Provisional	Back alignment and domain information

>PF00633 HHH: Helix-hairpin-helix motif; InterPro: IPR000445 The HhH motif is an around 20 amino acids domain present in prokaryotic and eukaryotic non-sequence-specific DNA binding proteins [, , ]	Back alignment and domain information

>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]	Back alignment and domain information

>PRK14600 ruvA Holliday junction DNA helicase RuvA; Provisional	Back alignment and domain information

>TIGR03491 RecB family nuclease, putative, TM0106 family	Back alignment and domain information

>PF04408 HA2: Helicase associated domain (HA2); InterPro: IPR007502 This presumed domain is about 90 amino acid residues in length	Back alignment and domain information

>COG0272 Lig NAD-dependent DNA ligase (contains BRCT domain type II) [DNA replication, recombination, and repair]	Back alignment and domain information

>smart00492 HELICc3 helicase superfamily c-terminal domain	Back alignment and domain information

>PF00633 HHH: Helix-hairpin-helix motif; InterPro: IPR000445 The HhH motif is an around 20 amino acids domain present in prokaryotic and eukaryotic non-sequence-specific DNA binding proteins [, , ]	Back alignment and domain information

>smart00847 HA2 Helicase associated domain (HA2) Add an annotation	Back alignment and domain information

>COG0632 RuvA Holliday junction resolvasome, DNA-binding subunit [DNA replication, recombination, and repair]	Back alignment and domain information

>COG2251 Predicted nuclease (RecB family) [General function prediction only]	Back alignment and domain information

>COG1555 ComEA DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair]	Back alignment and domain information

>COG0272 Lig NAD-dependent DNA ligase (contains BRCT domain type II) [DNA replication, recombination, and repair]	Back alignment and domain information

>PF12836 HHH_3: Helix-hairpin-helix motif; PDB: 2EDU_A 2OCE_A 3BZK_A 3BZC_A 2DUY_A	Back alignment and domain information

>KOG2841\|consensus	Back alignment and domain information

>PRK10917 ATP-dependent DNA helicase RecG; Provisional	Back alignment and domain information

>smart00491 HELICc2 helicase superfamily c-terminal domain	Back alignment and domain information

>PRK03352 DNA polymerase IV; Validated	Back alignment and domain information

>TIGR00595 priA primosomal protein N'	Back alignment and domain information

>PRK03858 DNA polymerase IV; Validated	Back alignment and domain information

>cd01703 PolY_Pol_iota DNA Polymerase iota	Back alignment and domain information

>PRK05580 primosome assembly protein PriA; Validated	Back alignment and domain information

>COG0177 Nth Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]	Back alignment and domain information

>PF14229 DUF4332: Domain of unknown function (DUF4332)	Back alignment and domain information

>PRK09202 nusA transcription elongation factor NusA; Validated	Back alignment and domain information

>PRK01216 DNA polymerase IV; Validated	Back alignment and domain information

>cd01701 PolY_Rev1 DNA polymerase Rev1	Back alignment and domain information

>COG1623 Predicted nucleic-acid-binding protein (contains the HHH domain) [General function prediction only]	Back alignment and domain information

>PF11798 IMS_HHH: IMS family HHH motif; InterPro: IPR024728 This helix-hairpin-helix motif is found in proteins belonging to the type-Y family of DNA polymerases []	Back alignment and domain information

>PRK14873 primosome assembly protein PriA; Provisional	Back alignment and domain information

>PRK08097 ligB NAD-dependent DNA ligase LigB; Reviewed	Back alignment and domain information

>TIGR03252 uncharacterized HhH-GPD family protein	Back alignment and domain information

>PRK03348 DNA polymerase IV; Provisional	Back alignment and domain information

>PRK14350 ligA NAD-dependent DNA ligase LigA; Provisional	Back alignment and domain information

>TIGR00194 uvrC excinuclease ABC, C subunit	Back alignment and domain information

>smart00278 HhH1 Helix-hairpin-helix DNA-binding motif class 1	Back alignment and domain information

>TIGR01448 recD_rel helicase, putative, RecD/TraA family	Back alignment and domain information

>KOG1002\|consensus	Back alignment and domain information

>TIGR00643 recG ATP-dependent DNA helicase RecG	Back alignment and domain information

>cd00424 PolY Y-family of DNA polymerases	Back alignment and domain information

>PRK02406 DNA polymerase IV; Validated	Back alignment and domain information

>cd01702 PolY_Pol_eta DNA Polymerase eta	Back alignment and domain information

>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]	Back alignment and domain information

>TIGR00580 mfd transcription-repair coupling factor (mfd)	Back alignment and domain information

>KOG2340\|consensus	Back alignment and domain information

>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane	Back alignment and domain information

>PF13871 Helicase_C_4: Helicase_C-like	Back alignment and domain information

>KOG1015\|consensus	Back alignment and domain information

>PRK12278 50S ribosomal protein L21/unknown domain fusion protein; Provisional	Back alignment and domain information

>COG1110 Reverse gyrase [DNA replication, recombination, and repair]	Back alignment and domain information

>cd03586 PolY_Pol_IV_kappa DNA Polymerase IV/Kappa	Back alignment and domain information

>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional	Back alignment and domain information

>PRK03609 umuC DNA polymerase V subunit UmuC; Reviewed	Back alignment and domain information

>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1	Back alignment and domain information

>cd01700 PolY_Pol_V_umuC umuC subunit of DNA Polymerase V	Back alignment and domain information

>PRK14133 DNA polymerase IV; Provisional	Back alignment and domain information

>PRK02794 DNA polymerase IV; Provisional	Back alignment and domain information

>KOG2534\|consensus	Back alignment and domain information

>PRK01810 DNA polymerase IV; Validated	Back alignment and domain information

>TIGR02027 rpoA DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type	Back alignment and domain information

>PTZ00205 DNA polymerase kappa; Provisional	Back alignment and domain information

>PRK05182 DNA-directed RNA polymerase subunit alpha; Provisional	Back alignment and domain information

>PRK03103 DNA polymerase IV; Reviewed	Back alignment and domain information

>PRK10702 endonuclease III; Provisional	Back alignment and domain information

>smart00478 ENDO3c endonuclease III	Back alignment and domain information

>PRK10689 transcription-repair coupling factor; Provisional	Back alignment and domain information

>PRK00024 hypothetical protein; Reviewed	Back alignment and domain information

>PRK13910 DNA glycosylase MutY; Provisional	Back alignment and domain information

>KOG1002\|consensus	Back alignment and domain information

>KOG2093\|consensus	Back alignment and domain information

>PRK13913 3-methyladenine DNA glycosylase; Provisional	Back alignment and domain information

>PRK14606 ruvA Holliday junction DNA helicase RuvA; Provisional	Back alignment and domain information

>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PRK13901 ruvA Holliday junction DNA helicase RuvA; Provisional	Back alignment and domain information

>CHL00013 rpoA RNA polymerase alpha subunit	Back alignment and domain information

>TIGR01083 nth endonuclease III	Back alignment and domain information

>COG0389 DinP Nucleotidyltransferase/DNA polymerase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>PF00730 HhH-GPD: HhH-GPD superfamily base excision DNA repair protein This entry corresponds to Endonuclease III This entry corresponds to Alkylbase DNA glycosidase; InterPro: IPR003265 Endonuclease III (4	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		693
2p6r_A		702	Crystal Structure Of Superfamily 2 Helicase Hel308		5e-48
2va8_A		715	Dna Repair Helicase Hel308 Length = 715		9e-33
2zj2_A		720	Archaeal Dna Helicase Hjm Apo State In Form 1 Lengt		8e-29
4f92_B		1724	Brr2 Helicase Region S1087l Length = 1724		6e-23
4f91_B		1724	Brr2 Helicase Region Length = 1724		6e-23
2xgj_A		1010	Structure Of Mtr4, A Dexh Helicase Involved In Nucl		2e-11
3l9o_A		1108	Crystal Structure Of Mtr4, A Co-Factor Of The Nucle		2e-11
4a4z_A		997	Crystal Structure Of The S. Cerevisiae Dexh Helicas		4e-09
2v1x_A		591	Crystal Structure Of Human Recq-Like Dna Helicase L		4e-04

>pdb|2P6R|A Chain A, Crystal Structure Of Superfamily 2 Helicase Hel308 In Complex With Unwound Dna Length = 702