Psyllid ID: psy15890

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120------
Protein Sequence
MLPTGMTAPLTGSASPAGRRSALLMCLWVAELDGSVAAATCPYVPPTTPYSMYTHRPASSDPSLSRVAECNVMSSSIASLRLKAKQHSNFNYTSITPPVSSANNRAACQYSDESVTRCPQASPVYA
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccHHHHHHHcccccccccccccccccccccccccEEEEcccccccccccccEcccHHHHHHHHHHHHHHHccccccccccccccccccccHccEcccccccccccccccc
Coil and Loop (DISEMBL)
mlptgmtapltgsaspagRRSALLMCLWVAELDgsvaaatcpyvppttpysmythrpassdpslsrvaecNVMSSSIASLRLKAKqhsnfnytsitppvssannraacqysdesvtrcpqaspvya
Flexible Loop (DISEMBL)
mlptgmtapltgsaspagRRSALLMCLWVAELDGSVAAATCPYVPPTTPYSMYTHRPASSDPSLSRVAECNVMSSSIASLRLKAKQHSNFNYTsitppvssannRAACQysdesvtrcpqaspvya
Low Complexity Region (SEG)
MLPTGMTAPLTGSASPAGRRSALLMCLWVAELDGSVAAATCPYVPPTTPYSMYTHRPASSDPSLSRVAECNVMSSSIASLRLKAKQHSNFNYTSITPPVSSANNRAACQYSDESVTRCPQASPVYA
Disordered region (IsUnstruct)
*********************ALLMCLWVAELDGSVAAATCPYVPPTTPYSM**************************************************************************
Disordered Region (DISOPRED)
**********************************************TTPYSMYTHRPASSDPSLSRVAECNVMSSSIASL*L*************************CQYSDESVTRCPQA*****
Disordered Region (DISEMBL)
MLPTGMTAPLTGSASPAGRRSALLMCLWVAELDGSVAAATCPYVPPTTPYSMYT************VAECNVMSSSIASLRLKAKQHSNFNYTSITPPVSSANN**********************
Disordered Region (DISPRO)
****************AGRRSALL*CLWVAELDGSVAAATCPYVPPTTPYSMYTHRPAS******R***************LKAKQH***************************V*RC*Q******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLPTGMTAPLTGSASPAGRRSALLMCLWVAELDGSVAAATCPYVPPTTPYSMYTHRPASSDPSLSRVAECNVMSSSIASLRLKAKQHSNFNYTSITPPVSSANNRAACQYSDESVTRCPQASPVYA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	126	2.2.26 [Sep-21-2011]
Q9W751	305	Pituitary homeobox 1 OS=X	N/A	N/A	0.484	0.2	0.425	1e-08
P56673	311	Pituitary homeobox 1 OS=G	no	N/A	0.690	0.279	0.375	1e-07
P70314	315	Pituitary homeobox 1 OS=M	yes	N/A	0.484	0.193	0.4	4e-07
Q99NA7	315	Pituitary homeobox 1 OS=R	yes	N/A	0.484	0.193	0.4	4e-07
P78337	314	Pituitary homeobox 1 OS=H	yes	N/A	0.484	0.194	0.4	4e-07
P97474	317	Pituitary homeobox 2 OS=M	no	N/A	0.404	0.160	0.478	1e-06
Q99697	317	Pituitary homeobox 2 OS=H	no	N/A	0.404	0.160	0.478	1e-06
Q9W5Z2	314	Pituitary homeobox 2 OS=D	no	N/A	0.404	0.162	0.478	1e-06
Q9R0W1	324	Pituitary homeobox 2 OS=R	no	N/A	0.404	0.157	0.478	1e-06
O93385	333	Pituitary homeobox 2 OS=G	no	N/A	0.396	0.150	0.485	2e-06

>sp|Q9W751|PITX1_XENLA Pituitary homeobox 1 OS=Xenopus laevis GN=pitx1 PE=2 SV=1

 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/80 (42%), Positives = 47/80 (58%), Gaps = 19/80 (23%)

Query: 32  LDGSVAAATCPYVPPTTPYSMYTHRPASSDPSLSRVAECNVMSSSIASLRLKAKQHSNFN 91
           L+ ++++  CPY PP +PY++Y                CN   SS+ASLRLK+KQHS F 
Sbjct: 244 LNSAMSSTGCPYGPPGSPYTVYRD-------------TCN---SSLASLRLKSKQHSTFG 287

Query: 92  YTSITPPVSSANNRAACQYS 111
           Y+S+  P SS N   ACQY+
Sbjct: 288 YSSLQSPASSLN---ACQYN 304

May play a role in the development of anterior structures, and in particular, the brain and facies and in specifying the identity or structure of hindlimb.
Xenopus laevis (taxid: 8355)

>sp|P56673|PITX1_CHICK Pituitary homeobox 1 OS=Gallus gallus GN=PITX1 PE=2 SV=1

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/112 (37%), Positives = 60/112 (53%), Gaps = 25/112 (22%)

Query: 2   LPTGMTAPLTGSASPAGRRSAL--LMCLWVAELDGSVAAATCPYVPPTTPYSMYTHRPAS 59
           +P+GM      SA P    S L  +  +  + L+ ++++  CPY PP +PYS+Y      
Sbjct: 223 MPSGMGH----SAVPGMANSGLNNINNISGSSLNSAMSSPACPYGPPGSPYSVYRD---- 274

Query: 60  SDPSLSRVAECNVMSSSIASLRLKAKQHSNFNYTSITPPVSSANNRAACQYS 111
                     CN   SS+ASL LK+KQHS+F Y+S+  P SS N   ACQY+
Sbjct: 275 ---------TCN---SSLASLALKSKQHSSFGYSSLQSPGSSLN---ACQYN 311

May play a role in the development of anterior structures, and in particular, the brain and facies and in specifying the identity or structure of hindlimb. Acts as a transcriptional activator by binding to promoter sequences with a TAAT/GCC core motif.

Gallus gallus (taxid: 9031)

>sp|P70314|PITX1_MOUSE Pituitary homeobox 1 OS=Mus musculus GN=Pitx1 PE=2 SV=2

 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 32/80 (40%), Positives = 43/80 (53%), Gaps = 19/80 (23%)

Query: 32  LDGSVAAATCPYVPPTTPYSMYTHRPASSDPSLSRVAECNVMSSSIASLRLKAKQHSNFN 91
           L+ +++   CPY  P +PYS+Y                CN   SS+ASLRLK+KQHS+F 
Sbjct: 254 LNSAMSPGACPYGTPASPYSVYRD-------------TCN---SSLASLRLKSKQHSSFG 297

Query: 92  YTSITPPVSSANNRAACQYS 111
           Y  +  P S  N   ACQY+
Sbjct: 298 YGGLQGPASGLN---ACQYN 314

May play a role in the development of anterior structures, and in particular, the brain and facies and in specifying the identity or structure of hindlimb. Acts as a transcriptional activator by binding to promoter sequences with a TAAT/GCC core motif. Can independently activate and synergize with PIT-1 on pituitary-specific target gene promoters, thus may subserve functions in generating both precursor and specific cell phenotypes in the anterior pituitary gland and in several other organs. Can activate pituitary transcription of the proopiomelanocortin gene.

Mus musculus (taxid: 10090)

>sp|Q99NA7|PITX1_RAT Pituitary homeobox 1 OS=Rattus norvegicus GN=Pitx1 PE=2 SV=1

 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 32/80 (40%), Positives = 43/80 (53%), Gaps = 19/80 (23%)

Query: 32  LDGSVAAATCPYVPPTTPYSMYTHRPASSDPSLSRVAECNVMSSSIASLRLKAKQHSNFN 91
           L+ +++   CPY  P +PYS+Y                CN   SS+ASLRLK+KQHS+F 
Sbjct: 254 LNSAMSPGACPYGTPASPYSVYRD-------------TCN---SSLASLRLKSKQHSSFG 297

Query: 92  YTSITPPVSSANNRAACQYS 111
           Y  +  P S  N   ACQY+
Sbjct: 298 YGGLQGPASGLN---ACQYN 314

May play a role in the development of anterior structures, and in particular, the brain and facies and in specifying the identity or structure of hindlimb.

Rattus norvegicus (taxid: 10116)

>sp|P78337|PITX1_HUMAN Pituitary homeobox 1 OS=Homo sapiens GN=PITX1 PE=1 SV=2

 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 32/80 (40%), Positives = 43/80 (53%), Gaps = 19/80 (23%)

Query: 32  LDGSVAAATCPYVPPTTPYSMYTHRPASSDPSLSRVAECNVMSSSIASLRLKAKQHSNFN 91
           L+ +++   CPY  P +PYS+Y                CN   SS+ASLRLK+KQHS+F 
Sbjct: 253 LNSAMSPGACPYGTPASPYSVYRD-------------TCN---SSLASLRLKSKQHSSFG 296

Query: 92  YTSITPPVSSANNRAACQYS 111
           Y  +  P S  N   ACQY+
Sbjct: 297 YGGLQGPASGLN---ACQYN 313

May play a role in the development of anterior structures, and in particular, the brain and facies and in specifying the identity or structure of hindlimb.

Homo sapiens (taxid: 9606)

>sp|P97474|PITX2_MOUSE Pituitary homeobox 2 OS=Mus musculus GN=Pitx2 PE=1 SV=2

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/71 (47%), Positives = 41/71 (57%), Gaps = 20/71 (28%)

Query: 41  CPYVPPTTPYSMYTHRPASSDPSLSRVAECNVMSSSIASLRLKAKQHSNFNYTSITPPVS 100
           CPY PPT PY    +R             CN   SS+ASLRLKAKQHS+F Y S+  P  
Sbjct: 262 CPYAPPTPPY---VYRDT-----------CN---SSLASLRLKAKQHSSFGYASVQNP-- 302

Query: 101 SANNRAACQYS 111
            A+N +ACQY+
Sbjct: 303 -ASNLSACQYA 312

Controls cell proliferation in a tissue-specific manner and is involved in morphogenesis. During embryonic development, exerts a role in the expansion of muscle progenitors. May play a role in the proper localization of asymmetric organs such as the heart and stomach. Isoform Ptx2c is involved in left-right asymmetry the developing embryo.

Mus musculus (taxid: 10090)

>sp|Q99697|PITX2_HUMAN Pituitary homeobox 2 OS=Homo sapiens GN=PITX2 PE=1 SV=2

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/71 (47%), Positives = 41/71 (57%), Gaps = 20/71 (28%)

Query: 41  CPYVPPTTPYSMYTHRPASSDPSLSRVAECNVMSSSIASLRLKAKQHSNFNYTSITPPVS 100
           CPY PPT PY    +R             CN   SS+ASLRLKAKQHS+F Y S+  P  
Sbjct: 262 CPYAPPTPPY---VYRDT-----------CN---SSLASLRLKAKQHSSFGYASVQNP-- 302

Query: 101 SANNRAACQYS 111
            A+N +ACQY+
Sbjct: 303 -ASNLSACQYA 312

Controls cell proliferation in a tissue-specific manner and is involved in morphogenesis. During embryonic development, exerts a role in the expansion of muscle progenitors. May play a role in the proper localization of asymmetric organs such as the heart and stomach. Isoform PTX2C is involved in left-right asymmetry the developing embryo.

Homo sapiens (taxid: 9606)

>sp|Q9W5Z2|PITX2_DANRE Pituitary homeobox 2 OS=Danio rerio GN=pitx2 PE=2 SV=1

 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/71 (47%), Positives = 41/71 (57%), Gaps = 20/71 (28%)

Query: 41  CPYVPPTTPYSMYTHRPASSDPSLSRVAECNVMSSSIASLRLKAKQHSNFNYTSITPPVS 100
           CPY PPT PY    +R             CN   SS+ASLRLKAKQHS+F Y S+  P  
Sbjct: 259 CPYAPPTPPY---VYRDT-----------CN---SSLASLRLKAKQHSSFGYASVQNP-- 299

Query: 101 SANNRAACQYS 111
            A+N +ACQY+
Sbjct: 300 -ASNLSACQYA 309

Isoform a and isoform c differentially regulate mesendoderm formation and asymmetric organ development. Both isoforms regulate left-right development, but isoform a has a stronger effect on heart laterality.

Danio rerio (taxid: 7955)

>sp|Q9R0W1|PITX2_RAT Pituitary homeobox 2 OS=Rattus norvegicus GN=Pitx2 PE=2 SV=1

 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/71 (47%), Positives = 41/71 (57%), Gaps = 20/71 (28%)

Query: 41  CPYVPPTTPYSMYTHRPASSDPSLSRVAECNVMSSSIASLRLKAKQHSNFNYTSITPPVS 100
           CPY PPT PY    +R             CN   SS+ASLRLKAKQHS+F Y S+  P  
Sbjct: 269 CPYAPPTPPY---VYRDT-----------CN---SSLASLRLKAKQHSSFGYASVQNP-- 309

Query: 101 SANNRAACQYS 111
            A+N +ACQY+
Sbjct: 310 -ASNLSACQYA 319

Controls cell proliferation in a tissue-specific manner and is involved in morphogenesis. During embryonic development, exerts a role in the expansion of muscle progenitors. May play a role in the proper localization of asymmetric organs such as the heart and stomach.

Rattus norvegicus (taxid: 10116)

>sp|O93385|PITX2_CHICK Pituitary homeobox 2 OS=Gallus gallus GN=PITX2 PE=2 SV=1

 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/70 (48%), Positives = 39/70 (55%), Gaps = 20/70 (28%)

Query: 41  CPYVPPTTPYSMYTHRPASSDPSLSRVAECNVMSSSIASLRLKAKQHSNFNYTSITPPVS 100
           CPY PPT PY    +R             CN   SS+ASLRLKAKQHS+F Y S+  P S
Sbjct: 278 CPYAPPTPPY---VYRDT-----------CN---SSLASLRLKAKQHSSFGYASVQNPAS 320

Query: 101 SANNRAACQY 110
              N +ACQY
Sbjct: 321 ---NLSACQY 327

May play an important role in development and maintenance of anterior structures. May play a role in determining left-right asymmetry and in vasculogenesis during avian embryogenesis.

Gallus gallus (taxid: 9031)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	126
189234679	517	PREDICTED: similar to pituitary homeobox	0.698	0.170	0.413	1e-08
270002832	508	Ptx1 [Tribolium castaneum]	0.698	0.173	0.413	1e-08
17380175	305	RecName: Full=Pituitary homeobox 1; AltN	0.484	0.2	0.425	8e-07
148233752	305	pituitary homeobox 1 [Xenopus laevis] gi	0.484	0.2	0.425	8e-07
148539550	305	pituitary homeobox 1 [Xenopus laevis] gi	0.484	0.2	0.425	8e-07
3236450	302	paired-like homeodomain transcription fa	0.690	0.288	0.383	9e-07
267844835	302	pituitary homeobox 1 [Gallus gallus] gi|	0.690	0.288	0.383	9e-07
295798066	276	ptx protein [Tribolium castaneum]	0.5	0.228	0.422	9e-07
224068062	302	PREDICTED: pituitary homeobox 1 isoform	0.484	0.201	0.437	1e-06
326928703	286	PREDICTED: pituitary homeobox 1-like [Me	0.5	0.220	0.426	1e-06

>gi|189234679|ref|XP_970167.2| PREDICTED: similar to pituitary homeobox1 [Tribolium castaneum]

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/116 (41%), Positives = 65/116 (56%), Gaps = 28/116 (24%)

Query: 1   MLPTGMTAPLTGSASPAGRRSALLMCLWVAELDGSVAAATCPYVPPTTPYSMYTHRPASS 60
           MLP GM++ LT + +                   +VA   CPY  P  PYSMY HR A++
Sbjct: 316 MLPGGMSSGLTSTPT-------------------AVAPQPCPYTTPANPYSMYHHR-AAT 355

Query: 61  DPSLSRVAECNVMSSSIASLRLKAKQHSNF-NYTSITPPVSSANNRAACQYSDESV 115
           +P       C+ MSSSIASLRLKAKQH+ F  Y+S++P  SS+   +ACQY+   +
Sbjct: 356 EP-------CSAMSSSIASLRLKAKQHTGFVGYSSVSPVRSSSAGLSACQYAGSGI 404

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270002832|gb|EEZ99279.1| Ptx1 [Tribolium castaneum]

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/116 (41%), Positives = 65/116 (56%), Gaps = 28/116 (24%)

Query: 1   MLPTGMTAPLTGSASPAGRRSALLMCLWVAELDGSVAAATCPYVPPTTPYSMYTHRPASS 60
           MLP GM++ LT + +                   +VA   CPY  P  PYSMY HR A++
Sbjct: 316 MLPGGMSSGLTSTPT-------------------AVAPQPCPYTTPANPYSMYHHR-AAT 355

Query: 61  DPSLSRVAECNVMSSSIASLRLKAKQHSNF-NYTSITPPVSSANNRAACQYSDESV 115
           +P       C+ MSSSIASLRLKAKQH+ F  Y+S++P  SS+   +ACQY+   +
Sbjct: 356 EP-------CSAMSSSIASLRLKAKQHTGFVGYSSVSPVRSSSAGLSACQYAGSGI 404

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|17380175|sp|Q9W751.1|PITX1_XENLA RecName: Full=Pituitary homeobox 1; AltName: Full=Homeobox protein PITX1; Short=X-PITX-1; Short=xPitx1; AltName: Full=Paired-like homeodomain transcription factor 1 gi|5566001|gb|AAD45292.1|AF155206_1 homeodomain transcription factor Pitx-1 [Xenopus laevis]

 Score = 58.5 bits (140), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 34/80 (42%), Positives = 47/80 (58%), Gaps = 19/80 (23%)

Query: 32  LDGSVAAATCPYVPPTTPYSMYTHRPASSDPSLSRVAECNVMSSSIASLRLKAKQHSNFN 91
           L+ ++++  CPY PP +PY++Y                CN   SS+ASLRLK+KQHS F 
Sbjct: 244 LNSAMSSTGCPYGPPGSPYTVYRD-------------TCN---SSLASLRLKSKQHSTFG 287

Query: 92  YTSITPPVSSANNRAACQYS 111
           Y+S+  P SS N   ACQY+
Sbjct: 288 YSSLQSPASSLN---ACQYN 304

Source: Xenopus laevis

Species: Xenopus laevis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|148233752|ref|NP_001080981.1| pituitary homeobox 1 [Xenopus laevis] gi|6851371|gb|AAF29531.1|AF217647_1 pituitary homeobox gene 1 paired-like homeodomain transcription factor [Xenopus laevis] gi|213624932|gb|AAI69446.1| Pituitary homeobox gene 1 paired-likehomeodomain transcription factor [Xenopus laevis] gi|213625070|gb|AAI69749.1| Pitx1 protein [Xenopus laevis] gi|213626444|gb|AAI69444.1| Pituitary homeobox gene 1 paired-likehomeodomain transcription factor [Xenopus laevis] gi|213626626|gb|AAI69747.1| Pitx1 protein [Xenopus laevis]

 Score = 58.5 bits (140), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 34/80 (42%), Positives = 47/80 (58%), Gaps = 19/80 (23%)

Query: 32  LDGSVAAATCPYVPPTTPYSMYTHRPASSDPSLSRVAECNVMSSSIASLRLKAKQHSNFN 91
           L+ ++++  CPY PP +PY++Y                CN   SS+ASLRLK+KQHS F 
Sbjct: 244 LNSAMSSTGCPYGPPGSPYTVYRD-------------TCN---SSLASLRLKSKQHSTFG 287

Query: 92  YTSITPPVSSANNRAACQYS 111
           Y+S+  P SS N   ACQY+
Sbjct: 288 YSSLQSPASSLN---ACQYN 304

Source: Xenopus laevis

Species: Xenopus laevis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|148539550|ref|NP_001091900.1| pituitary homeobox 1 [Xenopus laevis] gi|10798738|emb|CAC12834.1| Pitx1 protein [Xenopus laevis]

 Score = 58.5 bits (140), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 34/80 (42%), Positives = 47/80 (58%), Gaps = 19/80 (23%)

Query: 32  LDGSVAAATCPYVPPTTPYSMYTHRPASSDPSLSRVAECNVMSSSIASLRLKAKQHSNFN 91
           L+ ++++  CPY PP +PY++Y                CN   SS+ASLRLK+KQHS F 
Sbjct: 244 LNSAMSSTGCPYGPPGSPYTVYRD-------------TCN---SSLASLRLKSKQHSTFG 287

Query: 92  YTSITPPVSSANNRAACQYS 111
           Y+S+  P SS N   ACQY+
Sbjct: 288 YSSLQSPASSLN---ACQYN 304

Source: Xenopus laevis

Species: Xenopus laevis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|3236450|gb|AAC23684.1| paired-like homeodomain transcription factor Ptx1 [Gallus gallus]

 Score = 58.5 bits (140), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 43/112 (38%), Positives = 61/112 (54%), Gaps = 25/112 (22%)

Query: 2   LPTGMTAPLTGSASPAGRRSAL--LMCLWVAELDGSVAAATCPYVPPTTPYSMYTHRPAS 59
           +P+GM      SA P    S L  +  +  + L+ ++++  CPY PP +PYS+Y      
Sbjct: 213 MPSGMGH----SAVPGMANSGLNNINNISGSSLNSAMSSPACPYGPPGSPYSVYRD---- 264

Query: 60  SDPSLSRVAECNVMSSSIASLRLKAKQHSNFNYTSITPPVSSANNRAACQYS 111
                     CN   SS+ASLRLK+KQHS+F Y+S+  P SS N   ACQY+
Sbjct: 265 ---------TCN---SSLASLRLKSKQHSSFGYSSLQSPGSSLN---ACQYN 301

Source: Gallus gallus

Species: Gallus gallus

Genus: Gallus

Family: Phasianidae

Order: Galliformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|267844835|ref|NP_001161156.1| pituitary homeobox 1 [Gallus gallus] gi|267844837|ref|NP_001161157.1| pituitary homeobox 1 [Gallus gallus] gi|267844839|ref|NP_001161158.1| pituitary homeobox 1 [Gallus gallus]

 Score = 58.5 bits (140), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 43/112 (38%), Positives = 61/112 (54%), Gaps = 25/112 (22%)

Query: 2   LPTGMTAPLTGSASPAGRRSAL--LMCLWVAELDGSVAAATCPYVPPTTPYSMYTHRPAS 59
           +P+GM      SA P    S L  +  +  + L+ ++++  CPY PP +PYS+Y      
Sbjct: 213 MPSGMGH----SAVPGMANSGLNNINNISGSSLNSAMSSPACPYGPPGSPYSVYRD---- 264

Query: 60  SDPSLSRVAECNVMSSSIASLRLKAKQHSNFNYTSITPPVSSANNRAACQYS 111
                     CN   SS+ASLRLK+KQHS+F Y+S+  P SS N   ACQY+
Sbjct: 265 ---------TCN---SSLASLRLKSKQHSSFGYSSLQSPGSSLN---ACQYN 301

Source: Gallus gallus

Species: Gallus gallus

Genus: Gallus

Family: Phasianidae

Order: Galliformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|295798066|emb|CBL87030.1| ptx protein [Tribolium castaneum]

 Score = 58.5 bits (140), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 38/90 (42%), Positives = 48/90 (53%), Gaps = 27/90 (30%)

Query: 1   MLPTGMTAPLTGSASPAGRRSALLMCLWVAELDGSVAAATCPYVPPTTPYSMYTHRPASS 60
           MLP GM++ LT + +                   +VA   CPY  P  PYSMY HR A++
Sbjct: 197 MLPGGMSSGLTSTPT-------------------AVAPQPCPYTTPANPYSMYHHR-AAT 236

Query: 61  DPSLSRVAECNVMSSSIASLRLKAKQHSNF 90
           +P       C+ MSSSIA LRLKAKQH+ F
Sbjct: 237 EP-------CSAMSSSIAPLRLKAKQHTGF 259

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|224068062|ref|XP_002187978.1| PREDICTED: pituitary homeobox 1 isoform 1 [Taeniopygia guttata] gi|449475013|ref|XP_004175459.1| PREDICTED: pituitary homeobox 1 isoform 2 [Taeniopygia guttata]

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/80 (43%), Positives = 48/80 (60%), Gaps = 19/80 (23%)

Query: 32  LDGSVAAATCPYVPPTTPYSMYTHRPASSDPSLSRVAECNVMSSSIASLRLKAKQHSNFN 91
           L+ ++++  CPY PP +PYS+Y                CN   SS+ASLRLK+KQHS+F 
Sbjct: 241 LNSAMSSPACPYGPPGSPYSVYRD-------------TCN---SSLASLRLKSKQHSSFG 284

Query: 92  YTSITPPVSSANNRAACQYS 111
           Y+S+  P SS N   ACQY+
Sbjct: 285 YSSLQSPGSSLN---ACQYN 301

Source: Taeniopygia guttata

Species: Taeniopygia guttata

Genus: Taeniopygia

Family: Estrildidae

Order: Passeriformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|326928703|ref|XP_003210515.1| PREDICTED: pituitary homeobox 1-like [Meleagris gallopavo]

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 49/82 (59%), Gaps = 19/82 (23%)

Query: 30  AELDGSVAAATCPYVPPTTPYSMYTHRPASSDPSLSRVAECNVMSSSIASLRLKAKQHSN 89
           + L+ ++++  CPY PP +PYS+Y                CN   SS+ASLRLK+KQHS+
Sbjct: 223 SSLNSAMSSPACPYGPPGSPYSVYRD-------------TCN---SSLASLRLKSKQHSS 266

Query: 90  FNYTSITPPVSSANNRAACQYS 111
           F Y+S+  P SS N   ACQY+
Sbjct: 267 FGYSSLQSPGSSLN---ACQYN 285

Source: Meleagris gallopavo

Species: Meleagris gallopavo

Genus: Meleagris

Family: Phasianidae

Order: Galliformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	126
UNIPROTKB|E1C121	302	PITX1 "Pituitary homeobox 1" [	0.5	0.208	0.426	2.2e-09
UNIPROTKB|F1P452	311	PITX1 "Pituitary homeobox 1" [	0.5	0.202	0.426	2.3e-09
UNIPROTKB|P56673	311	PITX1 "Pituitary homeobox 1" [	0.5	0.202	0.414	1.1e-08
ZFIN|ZDB-GENE-060421-3623	285	pitx1 "paired-like homeodomain	0.484	0.214	0.4	2.4e-08
FB|FBgn0020912	509	Ptx1 "Ptx1" [Drosophila melano	0.579	0.143	0.443	3.6e-08
RGD|69253	315	Pitx1 "paired-like homeodomain	0.706	0.282	0.366	8.5e-08
UNIPROTKB|E2RRG5	313	PITX1 "Uncharacterized protein	0.706	0.284	0.366	1.1e-07
UNIPROTKB|F1MU46	314	PITX1 "Uncharacterized protein	0.706	0.283	0.366	1.1e-07
UNIPROTKB|P78337	314	PITX1 "Pituitary homeobox 1" [	0.706	0.283	0.366	1.1e-07
MGI|MGI:107374	315	Pitx1 "paired-like homeodomain	0.706	0.282	0.366	1.1e-07

UNIPROTKB|E1C121 PITX1 "Pituitary homeobox 1" [Gallus gallus (taxid:9031)]

 Score = 142 (55.0 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 35/82 (42%), Positives = 49/82 (59%)

Query:    30 AELDGSVAAATCPYVPPTTPYSMYTHRPASSDPSLSRVAECNVMSSSIASLRLKAKQHSN 89
             + L+ ++++  CPY PP +PYS+Y                CN   SS+ASLRLK+KQHS+
Sbjct:   239 SSLNSAMSSPACPYGPPGSPYSVYRDT-------------CN---SSLASLRLKSKQHSS 282

Query:    90 FNYTSITPPVSSANNRAACQYS 111
             F Y+S+  P SS N   ACQY+
Sbjct:   283 FGYSSLQSPGSSLN---ACQYN 301

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|F1P452 PITX1 "Pituitary homeobox 1" [Gallus gallus (taxid:9031)]

 Score = 142 (55.0 bits), Expect = 2.3e-09, P = 2.3e-09
 Identities = 35/82 (42%), Positives = 49/82 (59%)

Query:    30 AELDGSVAAATCPYVPPTTPYSMYTHRPASSDPSLSRVAECNVMSSSIASLRLKAKQHSN 89
             + L+ ++++  CPY PP +PYS+Y                CN   SS+ASLRLK+KQHS+
Sbjct:   249 SSLNSAMSSPACPYGPPGSPYSVYRDT-------------CN---SSLASLRLKSKQHSS 292

Query:    90 FNYTSITPPVSSANNRAACQYS 111
             F Y+S+  P SS N   ACQY+
Sbjct:   293 FGYSSLQSPGSSLN---ACQYN 311

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0000988 "protein binding transcription factor activity" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0014707 "branchiomeric skeletal muscle development" evidence=IEA

GO:0021983 "pituitary gland development" evidence=IEA

GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0048625 "myoblast cell fate commitment" evidence=IEA

GO:0051216 "cartilage development" evidence=IEA

UNIPROTKB|P56673 PITX1 "Pituitary homeobox 1" [Gallus gallus (taxid:9031)]

 Score = 136 (52.9 bits), Expect = 1.1e-08, P = 1.1e-08
 Identities = 34/82 (41%), Positives = 48/82 (58%)

Query:    30 AELDGSVAAATCPYVPPTTPYSMYTHRPASSDPSLSRVAECNVMSSSIASLRLKAKQHSN 89
             + L+ ++++  CPY PP +PYS+Y                CN   SS+ASL LK+KQHS+
Sbjct:   249 SSLNSAMSSPACPYGPPGSPYSVYRDT-------------CN---SSLASLALKSKQHSS 292

Query:    90 FNYTSITPPVSSANNRAACQYS 111
             F Y+S+  P SS N   ACQY+
Sbjct:   293 FGYSSLQSPGSSLN---ACQYN 311

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

ZFIN|ZDB-GENE-060421-3623 pitx1 "paired-like homeodomain transcription factor 1" [Danio rerio (taxid:7955)]

 Score = 132 (51.5 bits), Expect = 2.4e-08, P = 2.4e-08
 Identities = 32/80 (40%), Positives = 48/80 (60%)

Query:    32 LDGSVAAATCPYVPPTTPYSMYTHRPASSDPSLSRVAECNVMSSSIASLRLKAKQHSNFN 91
             ++ +++++TCPY PP +PYS+Y                CN   SS+A+LRLK+KQH +F 
Sbjct:   224 INPAMSSSTCPYGPPGSPYSVYRDT-------------CN---SSLATLRLKSKQHPSFG 267

Query:    92 YTSITPPVSSANNRAACQYS 111
             Y+ +  P SS N   ACQY+
Sbjct:   268 YSGLQSPGSSLN---ACQYN 284

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

FB|FBgn0020912 Ptx1 "Ptx1" [Drosophila melanogaster (taxid:7227)]

 Score = 135 (52.6 bits), Expect = 3.6e-08, P = 3.6e-08
 Identities = 39/88 (44%), Positives = 54/88 (61%)

Query:    34 GSVAAATCPYVPPTTPYSMYTHRPASSDPSLSRVAECNVMSSSIASLRLKAKQHSNFNYT 93
             G+V A  CPY  P  PY MY    ++++P +S     + MSSSIA+LRLKAKQH++  + 
Sbjct:   429 GAVGAP-CPYTTPANPY-MYR---SAAEPCMS-----SSMSSSIATLRLKAKQHASAGFG 478

Query:    94 S--ITP-PVSSANNR--AACQYSDESVT 116
             S    P PVS +N+   +ACQY+   VT
Sbjct:   479 SPYSAPSPVSRSNSAGLSACQYTGVGVT 506

GO:0005634 "nucleus" evidence=ISS;IDA

GO:0048813 "dendrite morphogenesis" evidence=IMP

GO:0043565 "sequence-specific DNA binding" evidence=ISS

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005667 "transcription factor complex" evidence=ISS

RGD|69253 Pitx1 "paired-like homeodomain 1" [Rattus norvegicus (taxid:10116)]

 Score = 128 (50.1 bits), Expect = 8.5e-08, P = 8.5e-08
 Identities = 41/112 (36%), Positives = 56/112 (50%)

Query:     4 TGMTAPLT-GSASPAGR-RSAL--LMCLWVAELDGSVAAATCPYVPPTTPYSMYTHRPAS 59
             + MT P + G  S  G   S L  +  L  + L+ +++   CPY  P +PYS+Y      
Sbjct:   222 SSMTMPSSMGPGSVPGMPNSGLNNINNLTGSSLNSAMSPGACPYGTPASPYSVYRDT--- 278

Query:    60 SDPSLSRVAECNVMSSSIASLRLKAKQHSNFNYTSITPPVSSANNRAACQYS 111
                       CN   SS+ASLRLK+KQHS+F Y  +  P S  N   ACQY+
Sbjct:   279 ----------CN---SSLASLRLKSKQHSSFGYGGLQGPASGLN---ACQYN 314

GO:0000988 "protein binding transcription factor activity" evidence=IEA;ISO

GO:0001501 "skeletal system development" evidence=ISO

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IMP

GO:0005634 "nucleus" evidence=ISO

GO:0005667 "transcription factor complex" evidence=IEA;ISO

GO:0005730 "nucleolus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IMP

GO:0014707 "branchiomeric skeletal muscle development" evidence=IEA;ISO

GO:0021983 "pituitary gland development" evidence=IEA;ISO

GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA;ISO

GO:0035137 "hindlimb morphogenesis" evidence=ISO

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA;ISO

GO:0048625 "myoblast cell fate commitment" evidence=IEA;ISO

GO:0051216 "cartilage development" evidence=IEA;ISO

UNIPROTKB|E2RRG5 PITX1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 127 (49.8 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 41/112 (36%), Positives = 56/112 (50%)

Query:     4 TGMTAPLT-G-SASPAGRRSAL--LMCLWVAELDGSVAAATCPYVPPTTPYSMYTHRPAS 59
             + MT P + G  A P    S L  +  L  + L+ +++   CPY  P +PYS+Y      
Sbjct:   220 SSMTMPSSMGPGAVPGMPNSGLNNINNLTGSSLNSAMSPGACPYGTPASPYSVYRDT--- 276

Query:    60 SDPSLSRVAECNVMSSSIASLRLKAKQHSNFNYTSITPPVSSANNRAACQYS 111
                       CN   SS+ASLRLK+KQHS+F Y  +  P S  N   ACQY+
Sbjct:   277 ----------CN---SSLASLRLKSKQHSSFGYGGLQGPASGLN---ACQYN 312

GO:0051216 "cartilage development" evidence=IEA

GO:0048625 "myoblast cell fate commitment" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA

GO:0021983 "pituitary gland development" evidence=IEA

GO:0014707 "branchiomeric skeletal muscle development" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0000988 "protein binding transcription factor activity" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

UNIPROTKB|F1MU46 PITX1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 127 (49.8 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 41/112 (36%), Positives = 56/112 (50%)

Query:     4 TGMTAPLT-G-SASPAGRRSAL--LMCLWVAELDGSVAAATCPYVPPTTPYSMYTHRPAS 59
             + MT P + G  A P    S L  +  L  + L+ +++   CPY  P +PYS+Y      
Sbjct:   221 SSMTMPSSMGPGAVPGMPNSGLNNINNLTGSSLNSAMSPGACPYGTPASPYSVYRDT--- 277

Query:    60 SDPSLSRVAECNVMSSSIASLRLKAKQHSNFNYTSITPPVSSANNRAACQYS 111
                       CN   SS+ASLRLK+KQHS+F Y  +  P S  N   ACQY+
Sbjct:   278 ----------CN---SSLASLRLKSKQHSSFGYGGLQGPASGLN---ACQYN 313

GO:0051216 "cartilage development" evidence=IEA

GO:0048625 "myoblast cell fate commitment" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA

GO:0021983 "pituitary gland development" evidence=IEA

GO:0014707 "branchiomeric skeletal muscle development" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0000988 "protein binding transcription factor activity" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

UNIPROTKB|P78337 PITX1 "Pituitary homeobox 1" [Homo sapiens (taxid:9606)]

 Score = 127 (49.8 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 41/112 (36%), Positives = 56/112 (50%)

Query:     4 TGMTAPLT-G-SASPAGRRSAL--LMCLWVAELDGSVAAATCPYVPPTTPYSMYTHRPAS 59
             + MT P + G  A P    S L  +  L  + L+ +++   CPY  P +PYS+Y      
Sbjct:   221 SSMTMPSSMGPGAVPGMPNSGLNNINNLTGSSLNSAMSPGACPYGTPASPYSVYRDT--- 277

Query:    60 SDPSLSRVAECNVMSSSIASLRLKAKQHSNFNYTSITPPVSSANNRAACQYS 111
                       CN   SS+ASLRLK+KQHS+F Y  +  P S  N   ACQY+
Sbjct:   278 ----------CN---SSLASLRLKSKQHSSFGYGGLQGPASGLN---ACQYN 313

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0000988 "protein binding transcription factor activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0014707 "branchiomeric skeletal muscle development" evidence=IEA

GO:0021983 "pituitary gland development" evidence=IEA

GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0048625 "myoblast cell fate commitment" evidence=IEA

GO:0051216 "cartilage development" evidence=IEA

GO:0001501 "skeletal system development" evidence=TAS

GO:0009653 "anatomical structure morphogenesis" evidence=TAS

GO:0005730 "nucleolus" evidence=IDA

MGI|MGI:107374 Pitx1 "paired-like homeodomain transcription factor 1" [Mus musculus (taxid:10090)]

 Score = 127 (49.8 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 41/112 (36%), Positives = 56/112 (50%)

Query:     4 TGMTAPLT-G-SASPAGRRSAL--LMCLWVAELDGSVAAATCPYVPPTTPYSMYTHRPAS 59
             + MT P + G  A P    S L  +  L  + L+ +++   CPY  P +PYS+Y      
Sbjct:   222 SSMTMPSSMGPGAVPGMPNSGLNNINNLTGSSLNSAMSPGACPYGTPASPYSVYRDT--- 278

Query:    60 SDPSLSRVAECNVMSSSIASLRLKAKQHSNFNYTSITPPVSSANNRAACQYS 111
                       CN   SS+ASLRLK+KQHS+F Y  +  P S  N   ACQY+
Sbjct:   279 ----------CN---SSLASLRLKSKQHSSFGYGGLQGPASGLN---ACQYN 314

GO:0000988 "protein binding transcription factor activity" evidence=IPI

GO:0001501 "skeletal system development" evidence=IMP

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISO

GO:0005634 "nucleus" evidence=IDA

GO:0005667 "transcription factor complex" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISO

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0014707 "branchiomeric skeletal muscle development" evidence=IMP

GO:0021983 "pituitary gland development" evidence=IMP

GO:0035116 "embryonic hindlimb morphogenesis" evidence=IGI

GO:0035137 "hindlimb morphogenesis" evidence=IDA;IMP

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IGI;IDA

GO:0048625 "myoblast cell fate commitment" evidence=IMP

GO:0051216 "cartilage development" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	126
pfam03826	21	pfam03826, OAR, OAR domain	1e-05

>gnl|CDD|146451 pfam03826, OAR, OAR domain

 Score = 39.3 bits (93), Expect = 1e-05
 Identities = 14/16 (87%), Positives = 15/16 (93%)

Query: 73 MSSSIASLRLKAKQHS 88
           SSSIASLRLKAK+HS
Sbjct: 4  RSSSIASLRLKAKEHS 19

Length = 21

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	126
KOG0486|consensus	351		99.75
PF03826	21	OAR: OAR domain; InterPro: IPR003654 This 14 amino	98.64

>KOG0486|consensus

Probab=99.75  E-value=4.7e-19  Score=150.03  Aligned_cols=73  Identities=48%  Similarity=0.853  Sum_probs=64.1

Q ss_pred             hhhhhhccC-cCCCCCCCCCCCCCCccccccCCCCCCCCCccccccccccccchhceecccccCCCccCCCCCCCCCCCC
Q psy15890         26 CLWVAELDG-SVAAATCPYVPPTTPYSMYTHRPASSDPSLSRVAECNVMSSSIASLRLKAKQHSNFNYTSITPPVSSANN  104 (126)
Q Consensus        26 ~l~~a~l~~-avs~a~CPY~~pa~PYsmYrhr~a~~~~~~~~~d~C~~msSSIASLRLKAKQHs~f~Y~sv~~p~s~s~~  104 (126)
                      -|....+++ +++.+.|||++|++||.|||             |+|+   ||||+||||||||.+|+|+.|+.|. ++.+
T Consensus       277 nL~~s~~~~~a~~~s~~~~~t~aspy~~yr-------------dtcn---SslaslrlkakQH~S~~~~~v~~p~-pa~~  339 (351)
T KOG0486|consen  277 NLSPSSLNSHAVSTSACPYATPASPYDVYR-------------DTCN---SSLASLRLKAKQHSSFGYPSVQNPN-PASN  339 (351)
T ss_pred             cCCccccccccccCCCCcCCCCCChhhhhh-------------hhhh---chhHhhhcccccccccCCccccCCC-Cccc
Confidence            455555555 88889999999999999999             9999   9999999999999999999999975 4679


Q ss_pred             CCcccccCCcc
Q psy15890        105 RAACQYSDESV  115 (126)
Q Consensus       105 LsACQYa~~~~  115 (126)
                      |+||||++++.
T Consensus       340 l~~cqy~~t~~  350 (351)
T KOG0486|consen  340 LSACQYAVTRP  350 (351)
T ss_pred             cCcCcccccCC
Confidence            99999997654

>PF03826 OAR: OAR domain; InterPro: IPR003654 This 14 amino acid motif has been identified within the C-terminal region of several Paired-like homeodomain (HD) containing proteins [, ]

Probab=98.64  E-value=3.3e-09  Score=59.78  Aligned_cols=18  Identities=67%  Similarity=0.780  Sum_probs=16.3

Q ss_pred             cccccccccchhceecccccC
Q psy15890         68 AECNVMSSSIASLRLKAKQHS   88 (126)
Q Consensus        68 d~C~~msSSIASLRLKAKQHs   88 (126)
                      |.|+   ||||+||||||||+
T Consensus         2 d~r~---sSIa~LRlKAkeH~   19 (21)
T PF03826_consen    2 DRRS---SSIAALRLKAKEHS   19 (21)
T ss_pred             Ccch---hhHHHHHHHHHHhc
Confidence            5677   99999999999996

It was named OAR domain after the initials of otp, aristaless, and rax []. Although it has been proposed that this domain could be important for transactivation and be involved in protein-protein interactions or DNA binding [, ], is function is not yet known. Some proteins known to contain a OAR domain include human RIEG, defects in which are the cause of Rieger syndrome []; human OG12X and Mus musculus (Mouse) Og12x, whose function is not yet known []; vertebrate Rax, which plays a role in the proliferation and/or differentiation of retinal cells []; Drosophila DRX, which appears to be important in brain development []; and human SHOX, encoded by the short stature homeobox-containing gene. Defects or lack of this protein are the cause of short stature associated with the Turner syndrome [].; GO: 0003677 DNA binding, 0007275 multicellular organismal development, 0005634 nucleus

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00