Psyllid ID: psy15948

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190------
Protein Sequence
MENHLFNLKFAAKELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARIHAENAIRQKNQSINYLRMSARVDAVASRVQTALTTRKVTQSMSGVVKAMDAAMKSMNLEKISGLMDKFEEQFEDLDVQSSYMENTMSQSVTTSVPQNDVDSLMKQVADEAGLELTMALPSGPDSIAASSQVSQEQDELSQRLARLRQAE
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccHHHHcccccccccccccccccHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccHHHHccccccccccccHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MENHLFNLKFAAKELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARIHAENAIRQKNQSINYLRMSARVDAVASRVQTALTTRKVTQSMSGVVKAMDAAMKSMNLEKISGLMDKFEEQFEDLDVQSSYmentmsqsvttsvpqndvDSLMKQVADEAGLELtmalpsgpdsiaasSQVSQEQDELSQRLARLRQAE
Flexible Loop (DISEMBL)
menhlfnlkfaakelernskrcekeekaeklktkkaiqkgnlevariHAENAIRQKNQSINYLRMSARVDAVASRVQTAlttrkvtqsmsGVVKAMDAAMKSMNLEKISGLMDKFEEQFEDLDVQSSYMENTMSQSVTTSVPQNDVDSLMKQVADEAGLELTMALPSGPDSIAASSQVSQEQDELSQRLARLRQAE
Low Complexity Region (SEG)
MENHLFNLKFAAKELERNSkrcekeekaeklktkkAIQKGNLEVARIHAENAIRQKNQSINYLRMSARVDAVASRVQTALTTRKVTQSMSGVVKAMDAAMKSMNLEKISGLMDKFEEQFEDLDVQSSYMENTMSQSVTTSVPQNDVDSLMKQVADEAGLELTMALPSGPDSIAASSQVSQEQDELSQRLARLRQAE
Disordered region (IsUnstruct)
*******************************************VARIHAENAIR**NQSINYLRMSARVDAVASRVQTALT*******************************************************************************************************************
Disordered Region (DISOPRED)
***HLFNLKF************************************IHAENAIRQKNQSINYLRMSARVDAVASRVQT**************VKAMDAAMK*M**EKI*GLM**FE****************************DVDSLMKQVADEAGL******************************ARLR***
Disordered Region (DISEMBL)
MENHLFNLKFAAKELE*****************KKAIQKGNLEVARIHAENAIRQKNQSINYLRMSARVDAVASRVQTALTTRKVTQSMSGVVKAMDAAMKSMNLEKISGLMDKFEEQFEDLDVQSSYMEN***********QNDVDSLMKQVADEAGLELTMALPSGPD**************************
Disordered Region (DISPRO)
MENHLFNLKFAAKELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARIHAENAIRQKNQSINYLRMSARVDAVASRVQTALTTRKVTQSMSGVVKAMDAAMKSMNLEKISGLMDKFEEQFEDLDVQSSYMENTMSQSVTTSVPQNDVDSLMKQVADEAGLELTMALP**********************L*RL****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MENHxxxxxxxxxxxxxxxxxxxxxxxxxxxxTKKAIQKGNLEVARIHAENAIRQKNQSINYLRMSARVDAVASRVQTALTTRKVTQSMSGVVKAMDAAMKSMNxxxxxxxxxxxxxxxxxxxxxSSYMENTMSQSVTTSVPQNDVDSLMKQVADEAGLELTMALPSGPDSIAAxxxxxxxxxxxxxxxxxxxxxE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	196	2.2.26 [Sep-21-2011]
Q5ZKX1	199	Charged multivesicular bo	yes	N/A	0.984	0.969	0.746	4e-69
Q7ZVB1	199	Charged multivesicular bo	yes	N/A	0.984	0.969	0.720	4e-68
Q99LU0	199	Charged multivesicular bo	yes	N/A	0.984	0.969	0.725	5e-65
Q9CQD4	199	Charged multivesicular bo	yes	N/A	0.984	0.969	0.725	6e-65
Q7SZB5	199	Charged multivesicular bo	N/A	N/A	0.984	0.969	0.725	9e-65
Q7LBR1	199	Charged multivesicular bo	yes	N/A	0.984	0.969	0.715	1e-64
Q5E994	199	Charged multivesicular bo	yes	N/A	0.984	0.969	0.709	7e-64
Q6DF27	199	Charged multivesicular bo	yes	N/A	0.984	0.969	0.715	3e-63
O96552	192	Charged multivesicular bo	yes	N/A	0.964	0.984	0.564	4e-58
Q921W0	196	Charged multivesicular bo	no	N/A	0.979	0.979	0.520	1e-52

>sp|Q5ZKX1|CHM1B_CHICK Charged multivesicular body protein 1b OS=Gallus gallus GN=CHMP1B PE=2 SV=1

 Score =  260 bits (664), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 144/193 (74%), Positives = 163/193 (84%)

Query: 1   MENHLFNLKFAAKELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARIHAENAIRQKNQSI 60
           ME HLFNLKFAAKEL RNSKRC+KEEKAEK K KKAIQKGN+EVARIHAENAIRQKNQ+I
Sbjct: 4   MEKHLFNLKFAAKELNRNSKRCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIRQKNQAI 63

Query: 61  NYLRMSARVDAVASRVQTALTTRKVTQSMSGVVKAMDAAMKSMNLEKISGLMDKFEEQFE 120
           N+LRMSARVDAVA+RVQTA+T  KVT+SM+GVVK+MDA +KSMNLEKIS LMDKFE QFE
Sbjct: 64  NFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKSMNLEKISALMDKFEHQFE 123

Query: 121 DLDVQSSYMENTMSQSVTTSVPQNDVDSLMKQVADEAGLELTMALPSGPDSIAASSQVSQ 180
            LDVQ+  MENTMS + T + PQN VD L++++ADEAGL+L M LP G      +S  S 
Sbjct: 124 TLDVQTQQMENTMSNTTTLTTPQNQVDMLLQEMADEAGLDLNMELPQGQTGSVGTSVASA 183

Query: 181 EQDELSQRLARLR 193
           EQDELSQRLARLR
Sbjct: 184 EQDELSQRLARLR 196

Probable peripherally associated component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids.
Gallus gallus (taxid: 9031)

>sp|Q7ZVB1|CHM1B_DANRE Charged multivesicular body protein 1b OS=Danio rerio GN=chmp1b PE=2 SV=1

 Score =  257 bits (656), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 139/193 (72%), Positives = 165/193 (85%)

Query: 1   MENHLFNLKFAAKELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARIHAENAIRQKNQSI 60
           ME HLFNLKFAAKEL+RNSK+C+KEEKAEK+K KKAIQKGN+EVARIHAENAIRQKNQS+
Sbjct: 4   MEKHLFNLKFAAKELQRNSKKCDKEEKAEKVKVKKAIQKGNMEVARIHAENAIRQKNQSV 63

Query: 61  NYLRMSARVDAVASRVQTALTTRKVTQSMSGVVKAMDAAMKSMNLEKISGLMDKFEEQFE 120
           N+LRMSARVDAVA+RVQTA+T  +VT+SM+GVVK MDA +KSMNLEKISGLM+KFE QFE
Sbjct: 64  NFLRMSARVDAVAARVQTAVTMNQVTKSMAGVVKGMDATLKSMNLEKISGLMEKFERQFE 123

Query: 121 DLDVQSSYMENTMSQSVTTSVPQNDVDSLMKQVADEAGLELTMALPSGPDSIAASSQVSQ 180
            LDVQ++ ME++MS + T + PQ  VD+LM ++ADEAGL+L M LP G      +S  S 
Sbjct: 124 TLDVQTAQMEDSMSSTTTLTTPQGQVDTLMMEMADEAGLDLNMELPQGQTGSVGTSVASA 183

Query: 181 EQDELSQRLARLR 193
           EQDELSQRLA+LR
Sbjct: 184 EQDELSQRLAKLR 196

Probable peripherally associated component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids.

Danio rerio (taxid: 7955)

>sp|Q99LU0|CH1B1_MOUSE Charged multivesicular body protein 1b-1 OS=Mus musculus GN=Chmp1b1 PE=1 SV=1

 Score =  246 bits (629), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 140/193 (72%), Positives = 162/193 (83%)

Query: 1   MENHLFNLKFAAKELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARIHAENAIRQKNQSI 60
           ME HLFNLKFAAKEL R+SK+C+KEEKAEK K KKAIQKGN+EVARIHAENAIRQKNQ +
Sbjct: 4   MEKHLFNLKFAAKELNRSSKKCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIRQKNQGV 63

Query: 61  NYLRMSARVDAVASRVQTALTTRKVTQSMSGVVKAMDAAMKSMNLEKISGLMDKFEEQFE 120
           N+LRMSARVDAVA+RVQTA+T  KVT+SM+GVVK+MDA +KSMNLEKIS LMDKFE QFE
Sbjct: 64  NFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKSMNLEKISALMDKFEHQFE 123

Query: 121 DLDVQSSYMENTMSQSVTTSVPQNDVDSLMKQVADEAGLELTMALPSGPDSIAASSQVSQ 180
            LDVQ+  ME+TMS + T + PQN VD L++++ADEAGL+L M LP G      +S  S 
Sbjct: 124 TLDVQTQQMEDTMSSTTTLTTPQNQVDMLLQEMADEAGLDLNMELPQGQTGSVGTSVASA 183

Query: 181 EQDELSQRLARLR 193
           EQDELSQRLARLR
Sbjct: 184 EQDELSQRLARLR 196

Probable peripherally associated component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids. The MVB pathway appears to require the sequential function of ESCRT-O, -I,-II and -III complexes. ESCRT-III proteins mostly dissociate from the invaginating membrane before the ILV is released. The ESCRT machinery also functions in topologically equivalent membrane fission events, such as the terminal stages of cytokinesis. ESCRT-III proteins are believed to mediate the necessary vesicle extrusion and/or membrane fission activities, possibly in conjunction with the AAA ATPase VPS4. Involved in cytokinesis. Involved in recruiting VPS4A and/or VPS4B and SPAST to the midbody of dividing cells.

Mus musculus (taxid: 10090)

>sp|Q9CQD4|CH1B2_MOUSE Charged multivesicular body protein 1b-2 OS=Mus musculus GN=Chmp1b2 PE=2 SV=2

 Score =  246 bits (628), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 140/193 (72%), Positives = 162/193 (83%)

Query: 1   MENHLFNLKFAAKELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARIHAENAIRQKNQSI 60
           ME HLFNLKFAAKEL RN+K+C+KEEKAEK K KKAIQKGN EVARIHAENAIRQKNQ+I
Sbjct: 4   MEKHLFNLKFAAKELNRNAKKCDKEEKAEKAKIKKAIQKGNTEVARIHAENAIRQKNQAI 63

Query: 61  NYLRMSARVDAVASRVQTALTTRKVTQSMSGVVKAMDAAMKSMNLEKISGLMDKFEEQFE 120
           N+LRMSARVDAVA+RVQTA+T  KVT+SM+GVVK+MDA ++SMNLEKIS LMDKFE QFE
Sbjct: 64  NFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLRSMNLEKISALMDKFEHQFE 123

Query: 121 DLDVQSSYMENTMSQSVTTSVPQNDVDSLMKQVADEAGLELTMALPSGPDSIAASSQVSQ 180
            LDVQ+  ME+TMS + T + PQN VD L++++ADEAGL+L M LP G      +S  S 
Sbjct: 124 TLDVQTQQMEDTMSSTTTLTTPQNQVDMLLQEMADEAGLDLNMELPQGQTGSVGASVAST 183

Query: 181 EQDELSQRLARLR 193
           EQDELSQRLARLR
Sbjct: 184 EQDELSQRLARLR 196

Probable peripherally associated component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids. The MVB pathway appears to require the sequential function of ESCRT-O, -I,-II and -III complexes. ESCRT-III proteins mostly dissociate from the invaginating membrane before the ILV is released. The ESCRT machinery also functions in topologically equivalent membrane fission events, such as the terminal stages of cytokinesis. ESCRT-III proteins are believed to mediate the necessary vesicle extrusion and/or membrane fission activities, possibly in conjunction with the AAA ATPase VPS4. Involved in cytokinesis. Involved in recruiting VPS4A and/or VPS4B and SPAST to the midbody of dividing cells.

Mus musculus (taxid: 10090)

>sp|Q7SZB5|CHM1B_XENLA Charged multivesicular body protein 1b OS=Xenopus laevis GN=chmp1b PE=2 SV=1

 Score =  246 bits (627), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 140/193 (72%), Positives = 161/193 (83%)

Query: 1   MENHLFNLKFAAKELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARIHAENAIRQKNQSI 60
           ME HLFNLKFAAKEL RN+K+CEKEEK EK K KKAIQKGN E+ARIHAENAIRQKNQ I
Sbjct: 4   MEKHLFNLKFAAKELNRNAKKCEKEEKTEKAKIKKAIQKGNTEIARIHAENAIRQKNQGI 63

Query: 61  NYLRMSARVDAVASRVQTALTTRKVTQSMSGVVKAMDAAMKSMNLEKISGLMDKFEEQFE 120
           N+LRMSARVDAVA+RVQTA+T  KVT+SM+GVVK+MDA +KSMNLEKIS LMDKFE QFE
Sbjct: 64  NFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKSMNLEKISALMDKFEHQFE 123

Query: 121 DLDVQSSYMENTMSQSVTTSVPQNDVDSLMKQVADEAGLELTMALPSGPDSIAASSQVSQ 180
            LDVQ+  ME+TMS + T + PQN VD+L+ ++ADEAGL+L+M LP G      +S  S 
Sbjct: 124 TLDVQTQQMEDTMSNTTTLTTPQNQVDNLLHEMADEAGLDLSMELPQGQTGSVGTSVAST 183

Query: 181 EQDELSQRLARLR 193
           EQDELSQRLARLR
Sbjct: 184 EQDELSQRLARLR 196

Probable peripherally associated component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids.

Xenopus laevis (taxid: 8355)

>sp|Q7LBR1|CHM1B_HUMAN Charged multivesicular body protein 1b OS=Homo sapiens GN=CHMP1B PE=1 SV=1

 Score =  245 bits (625), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 138/193 (71%), Positives = 163/193 (84%)

Query: 1   MENHLFNLKFAAKELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARIHAENAIRQKNQSI 60
           ME HLFNLKFAAKEL R++K+C+KEEKAEK K KKAIQKGN+EVARIHAENAIRQKNQ++
Sbjct: 4   MEKHLFNLKFAAKELSRSAKKCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIRQKNQAV 63

Query: 61  NYLRMSARVDAVASRVQTALTTRKVTQSMSGVVKAMDAAMKSMNLEKISGLMDKFEEQFE 120
           N+LRMSARVDAVA+RVQTA+T  KVT+SM+GVVK+MDA +K+MNLEKIS LMDKFE QFE
Sbjct: 64  NFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKTMNLEKISALMDKFEHQFE 123

Query: 121 DLDVQSSYMENTMSQSVTTSVPQNDVDSLMKQVADEAGLELTMALPSGPDSIAASSQVSQ 180
            LDVQ+  ME+TMS + T + PQN VD L++++ADEAGL+L M LP G      +S  S 
Sbjct: 124 TLDVQTQQMEDTMSSTTTLTTPQNQVDMLLQEMADEAGLDLNMELPQGQTGSVGTSVASA 183

Query: 181 EQDELSQRLARLR 193
           EQDELSQRLARLR
Sbjct: 184 EQDELSQRLARLR 196

Probable peripherally associated component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids. The MVB pathway appears to require the sequential function of ESCRT-O, -I,-II and -III complexes. ESCRT-III proteins mostly dissociate from the invaginating membrane before the ILV is released. The ESCRT machinery also functions in topologically equivalent membrane fission events, such as the terminal stages of cytokinesis and the budding of enveloped viruses (HIV-1 and other lentiviruses). ESCRT-III proteins are believed to mediate the necessary vesicle extrusion and/or membrane fission activities, possibly in conjunction with the AAA ATPase VPS4. Involved in cytokinesis. Involved in recruiting VPS4A and/or VPS4B and SPAST to the midbody of dividing cells. Involved in HIV-1 p6- and p9-dependent virus release.

Homo sapiens (taxid: 9606)

>sp|Q5E994|CHM1B_BOVIN Charged multivesicular body protein 1b OS=Bos taurus GN=CHMP1B PE=2 SV=1

 Score =  243 bits (619), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 137/193 (70%), Positives = 162/193 (83%)

Query: 1   MENHLFNLKFAAKELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARIHAENAIRQKNQSI 60
           ME HLFNLKFAAKEL R++K+C+KEEKAEK K KKAIQKGN+EVARIHAENAIRQKNQ++
Sbjct: 4   MEKHLFNLKFAAKELGRSAKKCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIRQKNQAV 63

Query: 61  NYLRMSARVDAVASRVQTALTTRKVTQSMSGVVKAMDAAMKSMNLEKISGLMDKFEEQFE 120
           N+LRMSARVDAVA+RVQTA+T  KVT+SM+GVVK+MDA +K+MNLEKIS LMDKFE QFE
Sbjct: 64  NFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKTMNLEKISALMDKFEHQFE 123

Query: 121 DLDVQSSYMENTMSQSVTTSVPQNDVDSLMKQVADEAGLELTMALPSGPDSIAASSQVSQ 180
            LDVQ+  ME+TMS + T + PQ  VD L++++ADEAGL+L M LP G      +S  S 
Sbjct: 124 TLDVQTQQMEDTMSSTTTLTTPQGQVDMLLQEMADEAGLDLNMELPQGQTGSVGTSVASA 183

Query: 181 EQDELSQRLARLR 193
           EQDELSQRLARLR
Sbjct: 184 EQDELSQRLARLR 196

Probable peripherally associated component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids. The MVB pathway appears to require the sequential function of ESCRT-O, -I,-II and -III complexes. ESCRT-III proteins mostly dissociate from the invaginating membrane before the ILV is released. The ESCRT machinery also functions in topologically equivalent membrane fission events, such as the terminal stages of cytokinesis and the budding of enveloped viruses (lentiviruses). ESCRT-III proteins are believed to mediate the necessary vesicle extrusion and/or membrane fission activities, possibly in conjunction with the AAA ATPase VPS4. Involved in cytokinesis. Involved in recruiting VPS4A and/or VPS4B and SPAST to the midbody of dividing cells.

Bos taurus (taxid: 9913)

>sp|Q6DF27|CHM1B_XENTR Charged multivesicular body protein 1b OS=Xenopus tropicalis GN=chmp1b PE=2 SV=1

 Score =  240 bits (613), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 138/193 (71%), Positives = 159/193 (82%)

Query: 1   MENHLFNLKFAAKELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARIHAENAIRQKNQSI 60
           ME +LFNLKFAAKEL RN+K+CEKEEK EK K KKAIQKGN E+ARIHAENAIRQKNQ I
Sbjct: 4   MEKNLFNLKFAAKELHRNAKKCEKEEKTEKAKIKKAIQKGNTEIARIHAENAIRQKNQGI 63

Query: 61  NYLRMSARVDAVASRVQTALTTRKVTQSMSGVVKAMDAAMKSMNLEKISGLMDKFEEQFE 120
           N+LRMSARVDAVA+RVQTA+T  KVT+SM+GVVK+MD  +KSMNLEKIS LMDKFE QFE
Sbjct: 64  NFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDTTLKSMNLEKISALMDKFEHQFE 123

Query: 121 DLDVQSSYMENTMSQSVTTSVPQNDVDSLMKQVADEAGLELTMALPSGPDSIAASSQVSQ 180
            LDVQ+  ME+TMS + T + PQN VD+L+ ++ADEAGL+L M LP G      +S  S 
Sbjct: 124 TLDVQTQQMEDTMSNTTTLTTPQNQVDNLLHEMADEAGLDLNMELPQGQTGSVGTSVAST 183

Query: 181 EQDELSQRLARLR 193
           EQDELSQRLARLR
Sbjct: 184 EQDELSQRLARLR 196

Probable peripherally associated component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids.

Xenopus tropicalis (taxid: 8364)

>sp|O96552|CHMP1_DICDI Charged multivesicular body protein 1 OS=Dictyostelium discoideum GN=chmp1 PE=3 SV=1

 Score =  224 bits (570), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 110/195 (56%), Positives = 154/195 (78%), Gaps = 6/195 (3%)

Query: 1   MENHLFNLKFAAKELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARIHAENAIRQKNQSI 60
           MEN LF LKF +K+LE+ SK+ E+ EKA+K+K KKAI++GN++ ARI+A+NAIR+KNQS+
Sbjct: 1   MENQLFQLKFTSKQLEKQSKKSEQSEKAQKIKLKKAIEQGNMDGARIYAQNAIREKNQSL 60

Query: 61  NYLRMSARVDAVASRVQTALTTRKVTQSMSGVVKAMDAAMKSMNLEKISGLMDKFEEQFE 120
           NYLR+++R+DAVASRV+TA+  + VT SM+ +VK+M+ +M++M+LEKI+ +MD+FE QFE
Sbjct: 61  NYLRLASRIDAVASRVETAIRMKSVTGSMANIVKSMEKSMRNMDLEKITQVMDQFERQFE 120

Query: 121 DLDVQSSYMENTMSQSVTTSVPQNDVDSLMKQVADEAGLELTMALPSGPDSIAASSQVSQ 180
           DLDVQS Y+EN M+Q+ T S P + VD L+ QVADE GL + M + S P     S +V Q
Sbjct: 121 DLDVQSVYVENAMNQTTTLSTPADQVDLLISQVADEHGLNVGMQMGSAP-----SEKVQQ 175

Query: 181 -EQDELSQRLARLRQ 194
            E DEL++RL RL+Q
Sbjct: 176 GETDELTERLNRLKQ 190

Probable peripherally associated component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and are delivered to lysosomes enabling degradation of membrane proteins.

Dictyostelium discoideum (taxid: 44689)

>sp|Q921W0|CHM1A_MOUSE Charged multivesicular body protein 1a OS=Mus musculus GN=Chmp1a PE=1 SV=1

 Score =  206 bits (523), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 102/196 (52%), Positives = 152/196 (77%), Gaps = 4/196 (2%)

Query: 1   MENHLFNLKFAAKELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARIHAENAIRQKNQSI 60
           M++ LF LKF AK+LE+ +K+ EK+ KAE+ K KKA+Q+ N+E AR++AENAIR+KN+ +
Sbjct: 1   MDDTLFQLKFTAKQLEKLAKKAEKDSKAEQAKVKKALQQKNVECARVYAENAIRKKNEGV 60

Query: 61  NYLRMSARVDAVASRVQTALTTRKVTQSMSGVVKAMDAAMKSMNLEKISGLMDKFEEQFE 120
           N+LRM++RVDAVAS+VQTA+T + VT++M+ V KA+D A+ +M+L+K+S +MD+FE+Q +
Sbjct: 61  NWLRMASRVDAVASKVQTAVTMKGVTKNMAQVTKALDKALSAMDLQKVSAVMDRFEQQVQ 120

Query: 121 DLDVQSSYMENTMSQSVTTSVPQNDVDSLMKQVADEAGLEL---TMALPSGPDSIAASSQ 177
           +LDV +S ME+++S + T + PQ  VDSL+ Q+A+E GLE+      LP G  ++  SS 
Sbjct: 121 NLDVHTSVMEDSVSSATTLTTPQEQVDSLIVQIAEENGLEVLDQLSQLPEGASAVGESSV 180

Query: 178 VSQEQDELSQRLARLR 193
            SQE D+LS+RLA LR
Sbjct: 181 RSQE-DQLSRRLAALR 195

Probable peripherally associated component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids. The MVB pathway appears to require the sequential function of ESCRT-O, -I,-II and -III complexes. ESCRT-III proteins mostly dissociate from the invaginating membrane before the ILV is released. The ESCRT machinery also functions in topologically equivalent membrane fission events, such as the terminal stages of cytokinesis. ESCRT-III proteins are believed to mediate the necessary vesicle extrusion and/or membrane fission activities, possibly in conjunction with the AAA ATPase VPS4. Involved in cytokinesis. Involved in recruiting VPS4A and/or VPS4B to the midbody of dividing cells. May also be involved in chromosome condensation. Targets the Polycomb group (PcG) protein BMI1/PCGF4 to regions of condensed chromatin. May play a role in stable cell cycle progression and in PcG gene silencing.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	196
194751801	203	GF10809 [Drosophila ananassae] gi|190625	1.0	0.965	0.813	2e-86
157134556	203	charged multivesicular body protein [Aed	1.0	0.965	0.848	6e-86
158295979	201	AGAP006518-PA [Anopheles gambiae str. PE	1.0	0.975	0.853	2e-85
321461638	202	hypothetical protein DAPPUDRAFT_231406 [	0.989	0.960	0.746	2e-82
170034074	194	charged multivesicular body protein 1b [	0.979	0.989	0.835	7e-82
332023108	193	Charged multivesicular body protein 1b [	0.974	0.989	0.854	2e-80
114052338	203	chromatin modifying protein 1b [Bombyx m	1.0	0.965	0.828	5e-80
291221351	200	PREDICTED: chromatin modifying protein 1	0.989	0.97	0.758	7e-80
156546012	200	PREDICTED: charged multivesicular body p	0.989	0.97	0.835	9e-80
195379812	203	GJ14099 [Drosophila virilis] gi|19415582	1.0	0.965	0.828	1e-79

>gi|194751801|ref|XP_001958212.1| GF10809 [Drosophila ananassae] gi|190625494|gb|EDV41018.1| GF10809 [Drosophila ananassae]

 Score =  323 bits (829), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 161/198 (81%), Positives = 175/198 (88%), Gaps = 2/198 (1%)

Query: 1   MENHLFNLKFAAKELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARIHAENAIRQKNQSI 60
           ME HLFNLKFA KELERNSK+CEKEE  EK K KKAIQKGN++VARIHAENAIRQK+Q++
Sbjct: 6   MEKHLFNLKFAVKELERNSKKCEKEENVEKNKAKKAIQKGNMDVARIHAENAIRQKSQAV 65

Query: 61  NYLRMSARVDAVASRVQTALTTRKVTQSMSGVVKAMDAAMKSMNLEKISGLMDKFEEQFE 120
           NYLRMSARVDAVASRVQ+ALTTRKVT SM+GVVKAMDAAMK MNLEKIS LM+KFE QFE
Sbjct: 66  NYLRMSARVDAVASRVQSALTTRKVTGSMAGVVKAMDAAMKGMNLEKISSLMEKFESQFE 125

Query: 121 DLDVQSSYMENTMSQSVTTSVPQNDVDSLMKQVADEAGLELTMALPSGPDS--IAASSQV 178
           DLDVQSS ME TMS +VTTSVPQ DVD L++QVADEAGLEL M LPSG  S  I AS+ V
Sbjct: 126 DLDVQSSVMEGTMSDTVTTSVPQGDVDHLLQQVADEAGLELNMELPSGVQSQTIGASTAV 185

Query: 179 SQEQDELSQRLARLRQAE 196
           SQEQDEL+QRLARLRQAE
Sbjct: 186 SQEQDELTQRLARLRQAE 203

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157134556|ref|XP_001656363.1| charged multivesicular body protein [Aedes aegypti] gi|157134558|ref|XP_001656364.1| charged multivesicular body protein [Aedes aegypti] gi|157134560|ref|XP_001656365.1| charged multivesicular body protein [Aedes aegypti] gi|108870430|gb|EAT34655.1| AAEL013119-PA [Aedes aegypti] gi|108870431|gb|EAT34656.1| AAEL013119-PC [Aedes aegypti] gi|403183334|gb|EJY58022.1| AAEL013119-PB [Aedes aegypti]

 Score =  322 bits (824), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 168/198 (84%), Positives = 180/198 (90%), Gaps = 2/198 (1%)

Query: 1   MENHLFNLKFAAKELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARIHAENAIRQKNQSI 60
           ME HLFNLKFA K+LERN+K+CEKEEK E LKTKKAIQKGN EVARIHAENAIRQKNQS+
Sbjct: 6   MEKHLFNLKFAVKDLERNAKKCEKEEKVEILKTKKAIQKGNTEVARIHAENAIRQKNQSL 65

Query: 61  NYLRMSARVDAVASRVQTALTTRKVTQSMSGVVKAMDAAMKSMNLEKISGLMDKFEEQFE 120
           NYLRMSARVDAVASRVQTALTTR+VT SM+GVVKAMDAAMK MNLEKISGLMDKFE QFE
Sbjct: 66  NYLRMSARVDAVASRVQTALTTRQVTNSMAGVVKAMDAAMKGMNLEKISGLMDKFESQFE 125

Query: 121 DLDVQSSYMENTMSQSVTTSVPQNDVDSLMKQVADEAGLELTMALPSGPDS--IAASSQV 178
           DLDVQSSYMENTMSQ+ TTSVPQNDV+SLM++VADEAGLEL M LPSGP S  I AS+Q 
Sbjct: 126 DLDVQSSYMENTMSQTTTTSVPQNDVESLMQRVADEAGLELNMELPSGPASTAIGASTQA 185

Query: 179 SQEQDELSQRLARLRQAE 196
           S EQDEL+ RLARLRQAE
Sbjct: 186 STEQDELTARLARLRQAE 203

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158295979|ref|XP_316550.3| AGAP006518-PA [Anopheles gambiae str. PEST] gi|157016292|gb|EAA11406.3| AGAP006518-PA [Anopheles gambiae str. PEST]

 Score =  320 bits (820), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 169/198 (85%), Positives = 181/198 (91%), Gaps = 2/198 (1%)

Query: 1   MENHLFNLKFAAKELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARIHAENAIRQKNQSI 60
           ME HLFNLKFA KELERN+K+CEKEEKAE LKTKKAIQKGN EVARIHAENAIRQK+QS+
Sbjct: 4   MEKHLFNLKFAVKELERNAKKCEKEEKAEILKTKKAIQKGNTEVARIHAENAIRQKSQSL 63

Query: 61  NYLRMSARVDAVASRVQTALTTRKVTQSMSGVVKAMDAAMKSMNLEKISGLMDKFEEQFE 120
           NYLRMSARVDAVASRVQTALTTR VT SM+GVVKAMDAAMK MNLEKISGLMDKFE QFE
Sbjct: 64  NYLRMSARVDAVASRVQTALTTRNVTNSMAGVVKAMDAAMKGMNLEKISGLMDKFESQFE 123

Query: 121 DLDVQSSYMENTMSQSVTTSVPQNDVDSLMKQVADEAGLELTMALPSGPDSIA--ASSQV 178
           DLDVQSSYMENTMSQ+ TT+VPQNDV+SLM++VADEAGLEL M LPSGP SIA  AS+Q 
Sbjct: 124 DLDVQSSYMENTMSQTTTTAVPQNDVESLMQRVADEAGLELNMELPSGPSSIAIGASTQA 183

Query: 179 SQEQDELSQRLARLRQAE 196
           S EQDEL+ RLARLRQAE
Sbjct: 184 STEQDELTARLARLRQAE 201

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321461638|gb|EFX72668.1| hypothetical protein DAPPUDRAFT_231406 [Daphnia pulex]

 Score =  310 bits (795), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 150/201 (74%), Positives = 173/201 (86%), Gaps = 7/201 (3%)

Query: 1   MENHLFNLKFAAKELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARIHAENAIRQKNQSI 60
           MENHLF+LKF  KE ERNSK+C+KEEK E+ K KKAIQKGN+EVARIH ENAIRQKNQS+
Sbjct: 1   MENHLFSLKFTVKEFERNSKKCDKEEKLERTKLKKAIQKGNMEVARIHGENAIRQKNQSL 60

Query: 61  NYLRMSARVDAVASRVQTALTTRKVTQSMSGVVKAMDAAMKSMNLEKISGLMDKFEEQFE 120
           N+LRM+AR+DAVASRVQTA+TT+KVTQSM+GVVKAMD+AM+SMNLEKIS LMDKFE+QFE
Sbjct: 61  NFLRMAARIDAVASRVQTAVTTKKVTQSMAGVVKAMDSAMRSMNLEKISALMDKFEKQFE 120

Query: 121 DLDVQSSYMENTMSQSVTTSVPQNDVDSLMKQVADEAGLELTMALPSGPDS-------IA 173
           DLDVQSS M+  MSQ+ TTSVPQNDVD LM+QVADEAG+EL M LP G  S       + 
Sbjct: 121 DLDVQSSCMDTAMSQTTTTSVPQNDVDFLMQQVADEAGIELNMELPQGNTSTLNPSVAVG 180

Query: 174 ASSQVSQEQDELSQRLARLRQ 194
           +S+Q S EQDEL+QRLARLRQ
Sbjct: 181 SSTQASTEQDELTQRLARLRQ 201

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170034074|ref|XP_001844900.1| charged multivesicular body protein 1b [Culex quinquefasciatus] gi|167875308|gb|EDS38691.1| charged multivesicular body protein 1b [Culex quinquefasciatus]

 Score =  308 bits (789), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 162/194 (83%), Positives = 176/194 (90%), Gaps = 2/194 (1%)

Query: 5   LFNLKFAAKELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARIHAENAIRQKNQSINYLR 64
           +FNLKFA K+LER +K+ EKEEKAE LKTKKAIQKGN EVARIHAENAIRQKNQS+NYLR
Sbjct: 1   MFNLKFAVKDLERQAKKSEKEEKAEILKTKKAIQKGNTEVARIHAENAIRQKNQSLNYLR 60

Query: 65  MSARVDAVASRVQTALTTRKVTQSMSGVVKAMDAAMKSMNLEKISGLMDKFEEQFEDLDV 124
           MSARVDAVASRVQTALTTR+VT SM+GVVKAMDAAMK MNLEKISGLMDKFE QFEDLDV
Sbjct: 61  MSARVDAVASRVQTALTTRQVTNSMAGVVKAMDAAMKGMNLEKISGLMDKFESQFEDLDV 120

Query: 125 QSSYMENTMSQSVTTSVPQNDVDSLMKQVADEAGLELTMALPSGPDS--IAASSQVSQEQ 182
           QSSYMENTMSQ+ TT+VPQNDV+SLM++VADEAGLEL M LPSGP S  I AS+Q S EQ
Sbjct: 121 QSSYMENTMSQTTTTAVPQNDVESLMQRVADEAGLELNMELPSGPASSAIGASTQASTEQ 180

Query: 183 DELSQRLARLRQAE 196
           DEL+ RLARLRQAE
Sbjct: 181 DELTARLARLRQAE 194

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332023108|gb|EGI63369.1| Charged multivesicular body protein 1b [Acromyrmex echinatior]

 Score =  303 bits (777), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 164/192 (85%), Positives = 176/192 (91%), Gaps = 1/192 (0%)

Query: 4   HLFNLKFAAKELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARIHAENAIRQKNQSINYL 63
           +LFNLKFA KELERNSK+CEKEEK EK K KKAIQKGN+E ARIHAENAIRQKNQ++NYL
Sbjct: 2   NLFNLKFAVKELERNSKKCEKEEKIEKTKIKKAIQKGNMEGARIHAENAIRQKNQALNYL 61

Query: 64  RMSARVDAVASRVQTALTTRKVTQSMSGVVKAMDAAMKSMNLEKISGLMDKFEEQFEDLD 123
           RMSARVDAVASRVQTALTTRKVTQSM+GVVKAMDAAMKSMNLEKISGLMDKFE QFEDLD
Sbjct: 62  RMSARVDAVASRVQTALTTRKVTQSMAGVVKAMDAAMKSMNLEKISGLMDKFESQFEDLD 121

Query: 124 VQSSYMENTMSQSVTTSVPQNDVDSLMKQVADEAGLELTMALPSGP-DSIAASSQVSQEQ 182
           VQSSYMEN MSQ+ TT+VPQNDVDSLM+QVADEAGLEL M LPSG   SI  S+ VSQEQ
Sbjct: 122 VQSSYMENAMSQTTTTNVPQNDVDSLMQQVADEAGLELNMELPSGQLGSIGTSTAVSQEQ 181

Query: 183 DELSQRLARLRQ 194
           DEL+QRLARLR+
Sbjct: 182 DELTQRLARLRE 193

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|114052338|ref|NP_001040238.1| chromatin modifying protein 1b [Bombyx mori] gi|87248473|gb|ABD36289.1| chromatin modifying protein 1b [Bombyx mori]

 Score =  302 bits (773), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 164/198 (82%), Positives = 178/198 (89%), Gaps = 2/198 (1%)

Query: 1   MENHLFNLKFAAKELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARIHAENAIRQKNQSI 60
           ME HLFNLKFA KELERNSK+CEKEEK EK K KKAIQKGN+E ARIHAENAIRQKNQ++
Sbjct: 6   MEKHLFNLKFAVKELERNSKKCEKEEKLEKEKAKKAIQKGNMEGARIHAENAIRQKNQAL 65

Query: 61  NYLRMSARVDAVASRVQTALTTRKVTQSMSGVVKAMDAAMKSMNLEKISGLMDKFEEQFE 120
           NYLRMSARVDAV+SRVQTALTTRKVT SM+GVVKAMDAAMKSMNLEKIS LMDKFE QFE
Sbjct: 66  NYLRMSARVDAVSSRVQTALTTRKVTNSMAGVVKAMDAAMKSMNLEKISTLMDKFESQFE 125

Query: 121 DLDVQSSYMENTMSQSVTTSVPQNDVDSLMKQVADEAGLELTMALPSG-PD-SIAASSQV 178
           DLDVQSSYMEN MSQ+ TT+VPQ DVD+L++QVADEAGLEL M LPSG P  SI  ++ V
Sbjct: 126 DLDVQSSYMENAMSQTTTTTVPQGDVDNLLQQVADEAGLELNMELPSGVPSTSIGTATVV 185

Query: 179 SQEQDELSQRLARLRQAE 196
           SQEQDEL+QRLARLRQAE
Sbjct: 186 SQEQDELTQRLARLRQAE 203

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|291221351|ref|XP_002730680.1| PREDICTED: chromatin modifying protein 1B-like [Saccoglossus kowalevskii]

 Score =  301 bits (772), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 148/195 (75%), Positives = 168/195 (86%), Gaps = 1/195 (0%)

Query: 1   MENHLFNLKFAAKELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARIHAENAIRQKNQSI 60
           ME HLFNLKFAAK+L R SK+C+KEEK EK K KKAIQKGN+E ARIHAENAIRQKNQS+
Sbjct: 5   MEKHLFNLKFAAKDLARQSKKCDKEEKVEKTKLKKAIQKGNMEGARIHAENAIRQKNQSL 64

Query: 61  NYLRMSARVDAVASRVQTALTTRKVTQSMSGVVKAMDAAMKSMNLEKISGLMDKFEEQFE 120
           N+LRMSAR+DA ASRVQ+A+T +KVT SM+GVVK+MDAAM+SMNLEKIS LMDKFE+QFE
Sbjct: 65  NFLRMSARIDATASRVQSAVTMKKVTSSMAGVVKSMDAAMRSMNLEKISLLMDKFEKQFE 124

Query: 121 DLDVQSSYMENTMSQSVTTSVPQNDVDSLMKQVADEAGLELTMALPSGPDS-IAASSQVS 179
           DLDVQSSYMENTMS + T +VPQ  VD LM++VADEAGLEL M LP G  S I  +S  S
Sbjct: 125 DLDVQSSYMENTMSATTTLTVPQGSVDGLMQEVADEAGLELNMELPQGQTSAIGTASAAS 184

Query: 180 QEQDELSQRLARLRQ 194
           QEQDELSQRLA+LRQ
Sbjct: 185 QEQDELSQRLAKLRQ 199

Source: Saccoglossus kowalevskii

Species: Saccoglossus kowalevskii

Genus: Saccoglossus

Family: Harrimaniidae

Class: Enteropneusta

Phylum: Hemichordata

Superkingdom: Eukaryota

>gi|156546012|ref|XP_001607950.1| PREDICTED: charged multivesicular body protein 1b-like [Nasonia vitripennis]

 Score =  301 bits (771), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 163/195 (83%), Positives = 177/195 (90%), Gaps = 1/195 (0%)

Query: 1   MENHLFNLKFAAKELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARIHAENAIRQKNQSI 60
           ME +LFNLKFA KELERNSK+CEKEEK EK K KKAIQKGN+E A+IHAENAIRQKNQ++
Sbjct: 6   MEKNLFNLKFAVKELERNSKKCEKEEKLEKAKVKKAIQKGNMEGAKIHAENAIRQKNQAL 65

Query: 61  NYLRMSARVDAVASRVQTALTTRKVTQSMSGVVKAMDAAMKSMNLEKISGLMDKFEEQFE 120
           NYLRMSARVDAVASRVQTALTTRKVTQSM+GVVKAMDAAMKSMNLEKISGLMDKFE QFE
Sbjct: 66  NYLRMSARVDAVASRVQTALTTRKVTQSMAGVVKAMDAAMKSMNLEKISGLMDKFESQFE 125

Query: 121 DLDVQSSYMENTMSQSVTTSVPQNDVDSLMKQVADEAGLELTMALPSGP-DSIAASSQVS 179
           DLDVQSSYMEN MSQ+ TT+VPQN+VD LM+QVADEAGLEL M LPSG   SI  S+ VS
Sbjct: 126 DLDVQSSYMENAMSQTTTTNVPQNEVDLLMQQVADEAGLELNMELPSGQVGSIGTSTAVS 185

Query: 180 QEQDELSQRLARLRQ 194
           QEQDEL+QRLARLR+
Sbjct: 186 QEQDELTQRLARLRE 200

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195379812|ref|XP_002048669.1| GJ14099 [Drosophila virilis] gi|194155827|gb|EDW71011.1| GJ14099 [Drosophila virilis]

 Score =  301 bits (770), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 164/198 (82%), Positives = 178/198 (89%), Gaps = 2/198 (1%)

Query: 1   MENHLFNLKFAAKELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARIHAENAIRQKNQSI 60
           ME HLFNLKFA KELERNSK+CEKEEK EK K KKAIQKGN++VARIHAENAIRQKNQ++
Sbjct: 6   MEKHLFNLKFAVKELERNSKKCEKEEKLEKAKAKKAIQKGNMDVARIHAENAIRQKNQAV 65

Query: 61  NYLRMSARVDAVASRVQTALTTRKVTQSMSGVVKAMDAAMKSMNLEKISGLMDKFEEQFE 120
           NYLRMSARVDAVASRVQ+ALTTRKVT SM+GVVKAMDAAMK MNLEKIS LM+KFE QFE
Sbjct: 66  NYLRMSARVDAVASRVQSALTTRKVTGSMAGVVKAMDAAMKGMNLEKISSLMEKFESQFE 125

Query: 121 DLDVQSSYMENTMSQSVTTSVPQNDVDSLMKQVADEAGLELTMALPSGPDS--IAASSQV 178
           DLDVQSS ME TMS +VTTSVPQ DVD+L++QVADEAGLEL M LPSG  S  I AS+QV
Sbjct: 126 DLDVQSSVMEGTMSDTVTTSVPQGDVDNLLQQVADEAGLELNMELPSGVQSSTIGASTQV 185

Query: 179 SQEQDELSQRLARLRQAE 196
           SQEQDEL+QRLARLRQAE
Sbjct: 186 SQEQDELTQRLARLRQAE 203

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	196
FB|FBgn0036805	203	Chmp1 "Chmp1" [Drosophila mela	1.0	0.965	0.757	2.1e-70
UNIPROTKB|Q5ZKX1	199	CHMP1B "Charged multivesicular	0.984	0.969	0.678	6.2e-62
UNIPROTKB|F1NVQ6	199	CHMP1B "Charged multivesicular	0.984	0.969	0.673	2.1e-61
MGI|MGI:1914314	199	Chmp1b "charged multivesicular	0.984	0.969	0.663	1.2e-60
ZFIN|ZDB-GENE-030131-8370	199	chmp1b "chromatin modifying pr	0.984	0.969	0.658	1.2e-60
MGI|MGI:1914278	199	2610002M06Rik "RIKEN cDNA 2610	0.984	0.969	0.663	1.9e-60
RGD|1566265	199	RGD1566265 "similar to RIKEN c	0.984	0.969	0.663	1.9e-60
UNIPROTKB|Q7LBR1	199	CHMP1B "Charged multivesicular	0.984	0.969	0.652	3.9e-60
RGD|1593500	230	Chmp1b "charged multivesicular	0.984	0.839	0.652	3.9e-60
UNIPROTKB|Q5E994	199	CHMP1B "Charged multivesicular	0.984	0.969	0.647	2.7e-59

FB|FBgn0036805 Chmp1 "Chmp1" [Drosophila melanogaster (taxid:7227)]

 Score = 713 (256.0 bits), Expect = 2.1e-70, P = 2.1e-70
 Identities = 150/198 (75%), Positives = 164/198 (82%)

Query:     1 MENHLFNLKFAAKELERNSXXXXXXXXXXXXXXXXAIQKGNLEVARIHAENAIRQKNQSI 60
             ME HLFNLKFA KELERNS                AIQKGN++VARIHAENAIRQKNQ++
Sbjct:     6 MEKHLFNLKFAVKELERNSKKCEKEEKLEKAKAKKAIQKGNMDVARIHAENAIRQKNQAV 65

Query:    61 NYLRMSARVDAVASRVQTALTTRKVTQSMSGVVKAMDAAMKSMNLEKISGLMDKFEEQFE 120
             NYLRMSARVDAVASRVQ+ALTTRKVT SM+GVVKAMDAAMK MNLEKIS LM+KFE QFE
Sbjct:    66 NYLRMSARVDAVASRVQSALTTRKVTGSMAGVVKAMDAAMKGMNLEKISSLMEKFESQFE 125

Query:   121 DLDVQSSYMENTMSQSVTTSVPQNDVDSLMKQVADEAGLELTMALPSG--PDSIAASSQV 178
             DLDVQSS ME TMS +VTTSVPQ DVD+L++QVADEAGLEL M LPSG    S+ AS+ V
Sbjct:   126 DLDVQSSVMEGTMSDTVTTSVPQGDVDNLLQQVADEAGLELNMELPSGVQSQSVGASTAV 185

Query:   179 SQEQDELSQRLARLRQAE 196
             SQEQDEL+QRLARLRQAE
Sbjct:   186 SQEQDELTQRLARLRQAE 203

GO:0015031 "protein transport" evidence=IEA

UNIPROTKB|Q5ZKX1 CHMP1B "Charged multivesicular body protein 1b" [Gallus gallus (taxid:9031)]

 Score = 633 (227.9 bits), Expect = 6.2e-62, P = 6.2e-62
 Identities = 131/193 (67%), Positives = 149/193 (77%)

Query:     1 MENHLFNLKFAAKELERNSXXXXXXXXXXXXXXXXAIQKGNLEVARIHAENAIRQKNQSI 60
             ME HLFNLKFAAKEL RNS                AIQKGN+EVARIHAENAIRQKNQ+I
Sbjct:     4 MEKHLFNLKFAAKELNRNSKRCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIRQKNQAI 63

Query:    61 NYLRMSARVDAVASRVQTALTTRKVTQSMSGVVKAMDAAMKSMNLEKISGLMDKFEEQFE 120
             N+LRMSARVDAVA+RVQTA+T  KVT+SM+GVVK+MDA +KSMNLEKIS LMDKFE QFE
Sbjct:    64 NFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKSMNLEKISALMDKFEHQFE 123

Query:   121 DLDVQSSYMENTMSQSVTTSVPQNDVDSLMKQVADEAGLELTMALPSGPDSIAASSQVSQ 180
              LDVQ+  MENTMS + T + PQN VD L++++ADEAGL+L M LP G      +S  S 
Sbjct:   124 TLDVQTQQMENTMSNTTTLTTPQNQVDMLLQEMADEAGLDLNMELPQGQTGSVGTSVASA 183

Query:   181 EQDELSQRLARLR 193
             EQDELSQRLARLR
Sbjct:   184 EQDELSQRLARLR 196

GO:0015031 "protein transport" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0031902 "late endosome membrane" evidence=IEA

UNIPROTKB|F1NVQ6 CHMP1B "Charged multivesicular body protein 1b" [Gallus gallus (taxid:9031)]

 Score = 628 (226.1 bits), Expect = 2.1e-61, P = 2.1e-61
 Identities = 130/193 (67%), Positives = 149/193 (77%)

Query:     1 MENHLFNLKFAAKELERNSXXXXXXXXXXXXXXXXAIQKGNLEVARIHAENAIRQKNQSI 60
             ME HLFNLKFAAKEL RNS                AIQKGN+EVARIHAENAIRQKNQ+I
Sbjct:     4 MEKHLFNLKFAAKELNRNSKRCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIRQKNQAI 63

Query:    61 NYLRMSARVDAVASRVQTALTTRKVTQSMSGVVKAMDAAMKSMNLEKISGLMDKFEEQFE 120
             N+LRMSARVDAVA+RVQTA+T  KVT+SM+GVVK+MDA +KSMNLEKIS LMDKFE QFE
Sbjct:    64 NFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKSMNLEKISALMDKFEHQFE 123

Query:   121 DLDVQSSYMENTMSQSVTTSVPQNDVDSLMKQVADEAGLELTMALPSGPDSIAASSQVSQ 180
              LDVQ+  ME+TMS + T + PQN VD L++++ADEAGL+L M LP G      +S  S 
Sbjct:   124 TLDVQTQQMEDTMSNTTTLTTPQNQVDMLLQEMADEAGLDLNMELPQGQTGSVGTSVASA 183

Query:   181 EQDELSQRLARLR 193
             EQDELSQRLARLR
Sbjct:   184 EQDELSQRLARLR 196

GO:0015031 "protein transport" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IEA

MGI|MGI:1914314 Chmp1b "charged multivesicular body protein 1B" [Mus musculus (taxid:10090)]

 Score = 621 (223.7 bits), Expect = 1.2e-60, P = 1.2e-60
 Identities = 128/193 (66%), Positives = 148/193 (76%)

Query:     1 MENHLFNLKFAAKELERNSXXXXXXXXXXXXXXXXAIQKGNLEVARIHAENAIRQKNQSI 60
             ME HLFNLKFAAKEL R+S                AIQKGN+EVARIHAENAIRQKNQ +
Sbjct:     4 MEKHLFNLKFAAKELNRSSKKCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIRQKNQGV 63

Query:    61 NYLRMSARVDAVASRVQTALTTRKVTQSMSGVVKAMDAAMKSMNLEKISGLMDKFEEQFE 120
             N+LRMSARVDAVA+RVQTA+T  KVT+SM+GVVK+MDA +KSMNLEKIS LMDKFE QFE
Sbjct:    64 NFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKSMNLEKISALMDKFEHQFE 123

Query:   121 DLDVQSSYMENTMSQSVTTSVPQNDVDSLMKQVADEAGLELTMALPSGPDSIAASSQVSQ 180
              LDVQ+  ME+TMS + T + PQN VD L++++ADEAGL+L M LP G      +S  S 
Sbjct:   124 TLDVQTQQMEDTMSSTTTLTTPQNQVDMLLQEMADEAGLDLNMELPQGQTGSVGTSVASA 183

Query:   181 EQDELSQRLARLR 193
             EQDELSQRLARLR
Sbjct:   184 EQDELSQRLARLR 196

GO:0000910 "cytokinesis" evidence=ISO

GO:0005575 "cellular_component" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=ISO

GO:0051301 "cell division" evidence=IEA

ZFIN|ZDB-GENE-030131-8370 chmp1b "chromatin modifying protein 1B" [Danio rerio (taxid:7955)]

 Score = 621 (223.7 bits), Expect = 1.2e-60, P = 1.2e-60
 Identities = 127/193 (65%), Positives = 150/193 (77%)

Query:     1 MENHLFNLKFAAKELERNSXXXXXXXXXXXXXXXXAIQKGNLEVARIHAENAIRQKNQSI 60
             ME HLFNLKFAAKEL+RNS                AIQKGN+EVARIHAENAIRQKNQS+
Sbjct:     4 MEKHLFNLKFAAKELQRNSKKCDKEEKAEKVKVKKAIQKGNMEVARIHAENAIRQKNQSV 63

Query:    61 NYLRMSARVDAVASRVQTALTTRKVTQSMSGVVKAMDAAMKSMNLEKISGLMDKFEEQFE 120
             N+LRMSARVDAVA+RVQTA+T  +VT+SM+GVVK MDA +KSMNLEKISGLM+KFE QFE
Sbjct:    64 NFLRMSARVDAVAARVQTAVTMNQVTKSMAGVVKGMDATLKSMNLEKISGLMEKFERQFE 123

Query:   121 DLDVQSSYMENTMSQSVTTSVPQNDVDSLMKQVADEAGLELTMALPSGPDSIAASSQVSQ 180
              LDVQ++ ME++MS + T + PQ  VD+LM ++ADEAGL+L M LP G      +S  S 
Sbjct:   124 TLDVQTAQMEDSMSSTTTLTTPQGQVDTLMMEMADEAGLDLNMELPQGQTGSVGTSVASA 183

Query:   181 EQDELSQRLARLR 193
             EQDELSQRLA+LR
Sbjct:   184 EQDELSQRLAKLR 196

GO:0015031 "protein transport" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0006810 "transport" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0031902 "late endosome membrane" evidence=IEA

MGI|MGI:1914278 2610002M06Rik "RIKEN cDNA 2610002M06 gene" [Mus musculus (taxid:10090)]

 Score = 619 (223.0 bits), Expect = 1.9e-60, P = 1.9e-60
 Identities = 128/193 (66%), Positives = 148/193 (76%)

Query:     1 MENHLFNLKFAAKELERNSXXXXXXXXXXXXXXXXAIQKGNLEVARIHAENAIRQKNQSI 60
             ME HLFNLKFAAKEL RN+                AIQKGN EVARIHAENAIRQKNQ+I
Sbjct:     4 MEKHLFNLKFAAKELNRNAKKCDKEEKAEKAKIKKAIQKGNTEVARIHAENAIRQKNQAI 63

Query:    61 NYLRMSARVDAVASRVQTALTTRKVTQSMSGVVKAMDAAMKSMNLEKISGLMDKFEEQFE 120
             N+LRMSARVDAVA+RVQTA+T  KVT+SM+GVVK+MDA ++SMNLEKIS LMDKFE QFE
Sbjct:    64 NFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLRSMNLEKISALMDKFEHQFE 123

Query:   121 DLDVQSSYMENTMSQSVTTSVPQNDVDSLMKQVADEAGLELTMALPSGPDSIAASSQVSQ 180
              LDVQ+  ME+TMS + T + PQN VD L++++ADEAGL+L M LP G      +S  S 
Sbjct:   124 TLDVQTQQMEDTMSSTTTLTTPQNQVDMLLQEMADEAGLDLNMELPQGQTGSVGASVAST 183

Query:   181 EQDELSQRLARLR 193
             EQDELSQRLARLR
Sbjct:   184 EQDELSQRLARLR 196

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0051301 "cell division" evidence=IEA

RGD|1566265 RGD1566265 "similar to RIKEN cDNA 2610002M06" [Rattus norvegicus (taxid:10116)]

 Score = 619 (223.0 bits), Expect = 1.9e-60, P = 1.9e-60
 Identities = 128/193 (66%), Positives = 148/193 (76%)

Query:     1 MENHLFNLKFAAKELERNSXXXXXXXXXXXXXXXXAIQKGNLEVARIHAENAIRQKNQSI 60
             ME HLFNLKFAAKEL RN+                AIQKGN EVARIHAENAIRQKNQ+I
Sbjct:     4 MEKHLFNLKFAAKELNRNAKKCDKEEKAEKAKIKKAIQKGNTEVARIHAENAIRQKNQAI 63

Query:    61 NYLRMSARVDAVASRVQTALTTRKVTQSMSGVVKAMDAAMKSMNLEKISGLMDKFEEQFE 120
             N+LRMSARVDAVA+RVQTA+T  KVT+SM+GVVK+MDA ++SMNLEKIS LMDKFE QFE
Sbjct:    64 NFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLRSMNLEKISALMDKFEHQFE 123

Query:   121 DLDVQSSYMENTMSQSVTTSVPQNDVDSLMKQVADEAGLELTMALPSGPDSIAASSQVSQ 180
              LDVQ+  ME+TMS + T + PQN VD L++++ADEAGL+L M LP G      +S  S 
Sbjct:   124 TLDVQTQQMEDTMSSTTTLTTPQNQVDMLLQEMADEAGLDLNMELPQGQTGSVGASVAST 183

Query:   181 EQDELSQRLARLR 193
             EQDELSQRLARLR
Sbjct:   184 EQDELSQRLARLR 196

GO:0015031 "protein transport" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IEA

UNIPROTKB|Q7LBR1 CHMP1B "Charged multivesicular body protein 1b" [Homo sapiens (taxid:9606)]

 Score = 616 (221.9 bits), Expect = 3.9e-60, P = 3.9e-60
 Identities = 126/193 (65%), Positives = 149/193 (77%)

Query:     1 MENHLFNLKFAAKELERNSXXXXXXXXXXXXXXXXAIQKGNLEVARIHAENAIRQKNQSI 60
             ME HLFNLKFAAKEL R++                AIQKGN+EVARIHAENAIRQKNQ++
Sbjct:     4 MEKHLFNLKFAAKELSRSAKKCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIRQKNQAV 63

Query:    61 NYLRMSARVDAVASRVQTALTTRKVTQSMSGVVKAMDAAMKSMNLEKISGLMDKFEEQFE 120
             N+LRMSARVDAVA+RVQTA+T  KVT+SM+GVVK+MDA +K+MNLEKIS LMDKFE QFE
Sbjct:    64 NFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKTMNLEKISALMDKFEHQFE 123

Query:   121 DLDVQSSYMENTMSQSVTTSVPQNDVDSLMKQVADEAGLELTMALPSGPDSIAASSQVSQ 180
              LDVQ+  ME+TMS + T + PQN VD L++++ADEAGL+L M LP G      +S  S 
Sbjct:   124 TLDVQTQQMEDTMSSTTTLTTPQNQVDMLLQEMADEAGLDLNMELPQGQTGSVGTSVASA 183

Query:   181 EQDELSQRLARLR 193
             EQDELSQRLARLR
Sbjct:   184 EQDELSQRLARLR 196

GO:0007049 "cell cycle" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0031902 "late endosome membrane" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0000910 "cytokinesis" evidence=IMP

RGD|1593500 Chmp1b "charged multivesicular body protein 1B" [Rattus norvegicus (taxid:10116)]

 Score = 616 (221.9 bits), Expect = 3.9e-60, P = 3.9e-60
 Identities = 126/193 (65%), Positives = 149/193 (77%)

Query:     1 MENHLFNLKFAAKELERNSXXXXXXXXXXXXXXXXAIQKGNLEVARIHAENAIRQKNQSI 60
             ME HLFNLKFAAKEL R++                AIQKGN+EVARIHAENAIRQKNQ++
Sbjct:    35 MEKHLFNLKFAAKELNRSAKKCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIRQKNQAV 94

Query:    61 NYLRMSARVDAVASRVQTALTTRKVTQSMSGVVKAMDAAMKSMNLEKISGLMDKFEEQFE 120
             N+LRMSARVDAVA+RVQTA+T  KVT+SM+GVVK+MDA +K+MNLEKIS LMDKFE QFE
Sbjct:    95 NFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKTMNLEKISALMDKFEHQFE 154

Query:   121 DLDVQSSYMENTMSQSVTTSVPQNDVDSLMKQVADEAGLELTMALPSGPDSIAASSQVSQ 180
              LDVQ+  ME+TMS + T + PQN VD L++++ADEAGL+L M LP G      +S  S 
Sbjct:   155 TLDVQTQQMEDTMSSTTTLTTPQNQVDMLLQEMADEAGLDLNMELPQGQTGSVGTSVASA 214

Query:   181 EQDELSQRLARLR 193
             EQDELSQRLARLR
Sbjct:   215 EQDELSQRLARLR 227

GO:0000910 "cytokinesis" evidence=ISO

GO:0019904 "protein domain specific binding" evidence=ISO

UNIPROTKB|Q5E994 CHMP1B "Charged multivesicular body protein 1b" [Bos taurus (taxid:9913)]

 Score = 608 (219.1 bits), Expect = 2.7e-59, P = 2.7e-59
 Identities = 125/193 (64%), Positives = 148/193 (76%)

Query:     1 MENHLFNLKFAAKELERNSXXXXXXXXXXXXXXXXAIQKGNLEVARIHAENAIRQKNQSI 60
             ME HLFNLKFAAKEL R++                AIQKGN+EVARIHAENAIRQKNQ++
Sbjct:     4 MEKHLFNLKFAAKELGRSAKKCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIRQKNQAV 63

Query:    61 NYLRMSARVDAVASRVQTALTTRKVTQSMSGVVKAMDAAMKSMNLEKISGLMDKFEEQFE 120
             N+LRMSARVDAVA+RVQTA+T  KVT+SM+GVVK+MDA +K+MNLEKIS LMDKFE QFE
Sbjct:    64 NFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKTMNLEKISALMDKFEHQFE 123

Query:   121 DLDVQSSYMENTMSQSVTTSVPQNDVDSLMKQVADEAGLELTMALPSGPDSIAASSQVSQ 180
              LDVQ+  ME+TMS + T + PQ  VD L++++ADEAGL+L M LP G      +S  S 
Sbjct:   124 TLDVQTQQMEDTMSSTTTLTTPQGQVDMLLQEMADEAGLDLNMELPQGQTGSVGTSVASA 183

Query:   181 EQDELSQRLARLR 193
             EQDELSQRLARLR
Sbjct:   184 EQDELSQRLARLR 196

GO:0031902 "late endosome membrane" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9HD42	CHM1A_HUMAN	No assigned EC number	0.5204	0.9795	0.9795	no	N/A
Q7ZVB1	CHM1B_DANRE	No assigned EC number	0.7202	0.9846	0.9698	yes	N/A
Q5ZKX1	CHM1B_CHICK	No assigned EC number	0.7461	0.9846	0.9698	yes	N/A
Q5E994	CHM1B_BOVIN	No assigned EC number	0.7098	0.9846	0.9698	yes	N/A
Q6PHF0	CHM1A_DANRE	No assigned EC number	0.5177	0.9846	0.9747	yes	N/A
Q6NUD8	CHM1A_XENLA	No assigned EC number	0.5204	0.9795	0.9795	N/A	N/A
Q921W0	CHM1A_MOUSE	No assigned EC number	0.5204	0.9795	0.9795	no	N/A
Q9CQD4	CH1B2_MOUSE	No assigned EC number	0.7253	0.9846	0.9698	yes	N/A
Q7SZB5	CHM1B_XENLA	No assigned EC number	0.7253	0.9846	0.9698	N/A	N/A
Q5R605	CHM1A_PONAB	No assigned EC number	0.5204	0.9795	0.9795	no	N/A
P69771	DID2_YEAST	No assigned EC number	0.4591	0.9795	0.9411	yes	N/A
Q7LBR1	CHM1B_HUMAN	No assigned EC number	0.7150	0.9846	0.9698	yes	N/A
Q99LU0	CH1B1_MOUSE	No assigned EC number	0.7253	0.9846	0.9698	yes	N/A
O60074	DID2_SCHPO	No assigned EC number	0.5153	0.9846	0.965	yes	N/A
Q6DF27	CHM1B_XENTR	No assigned EC number	0.7150	0.9846	0.9698	yes	N/A
O96552	CHMP1_DICDI	No assigned EC number	0.5641	0.9642	0.9843	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	196
pfam03357	169	pfam03357, Snf7, Snf7	3e-29
COG5491	204	COG5491, VPS24, Conserved protein implicated in se	4e-12

>gnl|CDD|146145 pfam03357, Snf7, Snf7

 Score =  105 bits (265), Expect = 3e-29
 Identities = 49/166 (29%), Positives = 86/166 (51%), Gaps = 2/166 (1%)

Query: 4   HLFNLKFAAKELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARIHAENAIRQKNQSINYL 63
            + +L+ A +EL++  +  EK+ K  + + KK  +KGN + A I  +   R + Q     
Sbjct: 2   AILSLRKAIRELDKKQESLEKKIKKLEAEIKKLAKKGNKDAALILLKQKKRYEKQLDQLD 61

Query: 64  RMSARVDAVASRVQTALTTRKVTQSMSGVVKAMDAAMKSMNLEKISGLMDKFEEQFEDLD 123
              A ++ V   ++ A T ++V  +M G  KAM A  K+M+++KI  LMD+ E+Q E  D
Sbjct: 62  GQLANLEQVRMAIENAKTNQEVLNAMKGGAKAMKAMNKNMDIDKIDDLMDEIEDQMEKAD 121

Query: 124 VQSSYMENTMSQSVTTSVPQNDVDSLMKQVADEAGLELTMALPSGP 169
             S  + +T+         + ++D+ +  + DE G E  + LPS P
Sbjct: 122 EISEMLSDTLDD--ADEEDEEELDAELDALLDEIGDEELVELPSAP 165

This family of proteins are involved in protein sorting and transport from the endosome to the vacuole/lysosome in eukaryotic cells. Vacuoles/lysosomes play an important role in the degradation of both lipids and cellular proteins. In order to perform this degradative function, vacuoles/lysosomes contain numerous hydrolases which have been transported in the form of inactive precursors via the biosynthetic pathway and are proteolytically activated upon delivery to the vacuole/lysosome. The delivery of transmembrane proteins, such as activated cell surface receptors to the lumen of the vacuole/lysosome, either for degradation/downregulation, or in the case of hydrolases, for proper localisation, requires the formation of multivesicular bodies (MVBs). These late endosomal structures are formed by invaginating and budding of the limiting membrane into the lumen of the compartment. During this process, a subset of the endosomal membrane proteins is sorted into the forming vesicles. Mature MVBs fuse with the vacuole/lysosome, thereby releasing cargo containing vesicles into its hydrolytic lumen for degradation. Endosomal proteins that are not sorted into the intralumenal MVB vesicles are either recycled back to the plasma membrane or Golgi complex, or remain in the limiting membrane of the MVB and are thereby transported to the limiting membrane of the vacuole/lysosome as a consequence of fusion. Therefore, the MVB sorting pathway plays a critical role in the decision between recycling and degradation of membrane proteins. A few archaeal sequences are also present within this family. Length = 169

>gnl|CDD|227778 COG5491, VPS24, Conserved protein implicated in secretion [Cell motility and secretion]

 Score = 62.1 bits (151), Expect = 4e-12
 Identities = 45/157 (28%), Positives = 65/157 (41%), Gaps = 11/157 (7%)

Query: 12  AKELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARIHAENAIRQKNQSINYLRMSARVDA 71
              LER +K+  +E K E  K +  + +         A N  R   +     +  +R+DA
Sbjct: 2   RSSLERQAKKLVRELKQEAKKGQVLLNE-----IAKKAPNRRRLAEELYKLRKARSRLDA 56

Query: 72  VASRVQTALTTRKVTQSMSGVVKAMDAAMKSMN-LEKISGLMDKFEEQFEDLDVQSS--- 127
             SR+Q+  T       M  V   M  A   MN LE I  +M  FE QF  L++      
Sbjct: 57  SISRLQSLDTMLFEKVVMRQVSGDMAKAAMYMNELESIRRIMQLFETQFLALELVQLRLE 116

Query: 128 YMENTMSQSVTTSV--PQNDVDSLMKQVADEAGLELT 162
            M+  M   V   V     ++D L+ +V  E GLEL 
Sbjct: 117 TMDELMDVVVGDPVLEDLEELDELVNKVLPEIGLELD 153

Length = 204

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	196
KOG3230|consensus	224		100.0
KOG3232|consensus	203		100.0
KOG3231|consensus	208		100.0
KOG3229|consensus	227		100.0
PF03357	171	Snf7: Snf7; InterPro: IPR005024 This is a family o	99.94
KOG2910|consensus	209		99.73
KOG1656|consensus	221		99.7
PTZ00446	191	vacuolar sorting protein SNF7-like; Provisional	99.69
PTZ00464	211	SNF-7-like protein; Provisional	99.63
COG5491	204	VPS24 Conserved protein implicated in secretion [C	99.56
KOG2911|consensus	439		99.22
KOG1655|consensus	218		98.69
COG5491	204	VPS24 Conserved protein implicated in secretion [C	97.86
PTZ00464	211	SNF-7-like protein; Provisional	97.63
PRK10698	222	phage shock protein PspA; Provisional	97.62
PF03398	165	Ist1: Regulator of Vps4 activity in the MVB pathwa	97.2
TIGR02977	219	phageshock_pspA phage shock protein A. Members of	97.02
KOG3230|consensus	224		96.94
KOG3231|consensus	208		96.8
PF04012	221	PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T	96.79
PF03357	171	Snf7: Snf7; InterPro: IPR005024 This is a family o	95.9
COG1842	225	PspA Phage shock protein A (IM30), suppresses sigm	94.58
PTZ00446	191	vacuolar sorting protein SNF7-like; Provisional	94.58
KOG3229|consensus	227		91.52
KOG1656|consensus	221		91.46
KOG3232|consensus	203		86.2
PRK15039	90	transcriptional repressor RcnR to maintain nickel	83.29

>KOG3230|consensus

Probab=100.00  E-value=8.6e-48  Score=305.44  Aligned_cols=190  Identities=30%  Similarity=0.480  Sum_probs=178.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15948          5 LFNLKFAAKELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARIHAENAIRQKNQSINYLRMSARVDAVASRVQTALTTRK   84 (196)
Q Consensus         5 i~~Lr~~~r~l~Re~~kle~ee~k~~~~iKka~kkg~~~~aki~Ak~lvr~rk~~~~l~~~~aqL~~v~~~l~~a~~~~~   84 (196)
                      -+.|..+.|+|+|+..+++.++|++..+||+.+|.|+++++||+||+|||+|+|+.+|+.+++||.+|+.++++.+++.+
T Consensus        18 qRal~~a~ReleRer~~le~qeKklvaeIKk~AK~gq~~A~KimAkdLvRtR~~i~kf~~~kaqiqaVSl~iQtlkss~s   97 (224)
T KOG3230|consen   18 QRALNKATRELERERQKLELQEKKLVAEIKKTAKQGQMDAVKIMAKDLVRTRRYIKKFQNMKAQIQAVSLRIQTLKSSTS   97 (224)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhHHHHHHhhhccccCCCCchhhHHHHHHHHHHHhcchHhhc
Q psy15948         85 VTQSMSGVVKAMDAAMKSMNLEKISGLMDKFEEQFEDLDVQSSYMENTMSQSVTTSVPQNDVDSLMKQVADEAGLELTMA  164 (196)
Q Consensus        85 ~~~~m~~~~~~m~~~n~~m~l~~i~~~m~~f~k~~~~~~~~~e~m~d~m~~~~~~~~~eeevd~lv~qv~~E~~~~~~~~  164 (196)
                      |+.+|+++|++|..||+.||||+++++|++|++|++.|++.+|||+|++|++.+++++|||+|++|+|||||||++++.+
T Consensus        98 ma~aMkGaTkam~~MNrqmnlpq~qkIm~eFekQse~Mdm~~Emm~daIDdal~~~edEEEtd~lvnqVLDEiGvdl~~q  177 (224)
T KOG3230|consen   98 MAQAMKGATKAMAGMNRQMNLPQIQKIMQEFEKQSEIMDMKEEMMDDAIDDALGDDEDEEETDDLVNQVLDEIGVDLASQ  177 (224)
T ss_pred             HHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHcccHHHH
Confidence            99999999999999999999999999999999999999999999999999999988999999999999999999999999


Q ss_pred             CCCCCCCcc---------cccc-------ccchHHHHHHHHHHhhc
Q psy15948        165 LPSGPDSIA---------ASSQ-------VSQEQDELSQRLARLRQ  194 (196)
Q Consensus       165 l~~~p~~~~---------~~~~-------~~~~~~~l~~RL~~Lr~  194 (196)
                      |.++|+..+         .+.+       ....+|||++||++||.
T Consensus       178 L~~~P~~~~~~~~a~~ig~~~a~~~gs~~~~~~dddLqaRL~~Lrk  223 (224)
T KOG3230|consen  178 LSSLPSAAGSLPIAKTIGGKKAEAAGSEFHSDADDDLQARLDNLRK  223 (224)
T ss_pred             hccCcccccccchhhccCCccccccccccCCCchhHHHHHHHHHhc
Confidence            999998211         1101       13569999999999996

>KOG3232|consensus

Probab=100.00  E-value=1.3e-45  Score=288.11  Aligned_cols=194  Identities=68%  Similarity=0.951  Sum_probs=181.6

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15948          1 MENHLFNLKFAAKELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARIHAENAIRQKNQSINYLRMSARVDAVASRVQTAL   80 (196)
Q Consensus         1 ~~~~i~~Lr~~~r~l~Re~~kle~ee~k~~~~iKka~kkg~~~~aki~Ak~lvr~rk~~~~l~~~~aqL~~v~~~l~~a~   80 (196)
                      |++++|+|+++.++|.|++++|+++|+.++.++|+|+++||++.|||||.|+||++++..+|+++++++++|+++++++.
T Consensus         7 le~~lf~LkF~sk~L~r~a~kceKeEK~Ek~K~kkAi~kgN~dvArIyAeNAIRkkne~~n~LrlssRvDAVaaRvqTav   86 (203)
T KOG3232|consen    7 LENHLFDLKFTSKQLQRQAKKCEKEEKAEKAKLKKAIQKGNMDVARIYAENAIRKKNEAVNYLRLSSRVDAVAARVQTAV   86 (203)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhHHHHHHhhhccccCCCCchhhHHHHHHHHHHHhcch
Q psy15948         81 TTRKVTQSMSGVVKAMDAAMKSMNLEKISGLMDKFEEQFEDLDVQSSYMENTMSQSVTTSVPQNDVDSLMKQVADEAGLE  160 (196)
Q Consensus        81 ~~~~~~~~m~~~~~~m~~~n~~m~l~~i~~~m~~f~k~~~~~~~~~e~m~d~m~~~~~~~~~eeevd~lv~qv~~E~~~~  160 (196)
                      .+.+|+++|.+++++|....+.||+++|+.+|+.|+++|+.+++..++|.++|++......|+++||.|+.+|+||+|++
T Consensus        87 tmr~Vt~sM~gVvK~md~alktmNLekis~~MDkFE~qFedldvqt~~me~~m~~st~l~tpq~~Vd~Lmq~vADeaGlE  166 (203)
T KOG3232|consen   87 TMRKVTKSMAGVVKSMDSALKTMNLEKISQLMDKFEKQFEDLDVQTEVMEKAMSGSTALSTPQGDVDSLMQQVADEAGLE  166 (203)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhHHHHHHHhccCcccccCChhHHHHHHHHHHHHhchh
Confidence            99999999999999999999999999999999999999999999999999999999988899999999999999999999


Q ss_pred             HhhcCCCCC-CC--ccccccccchHHHHHHHHHHhhcC
Q psy15948        161 LTMALPSGP-DS--IAASSQVSQEQDELSQRLARLRQA  195 (196)
Q Consensus       161 ~~~~l~~~p-~~--~~~~~~~~~~~~~l~~RL~~Lr~~  195 (196)
                      ++..||... ++  ++++. ...++|+|..||++||+.
T Consensus       167 lnq~lp~~~~~a~~~~t~~-~~~e~d~L~qRLaaLR~~  203 (203)
T KOG3232|consen  167 LNQELPQNVVPAISVKTSA-VVDEEDDLTQRLAALRAR  203 (203)
T ss_pred             hhhcCCCCCCCCcCCCCcc-ccchhhHHHHHHHHHhcC
Confidence            999998653 22  33332 234459999999999963

>KOG3231|consensus

Probab=100.00  E-value=6.9e-41  Score=260.26  Aligned_cols=189  Identities=22%  Similarity=0.366  Sum_probs=180.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15948          6 FNLKFAAKELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARIHAENAIRQKNQSINYLRMSARVDAVASRVQTALTTRKV   85 (196)
Q Consensus         6 ~~Lr~~~r~l~Re~~kle~ee~k~~~~iKka~kkg~~~~aki~Ak~lvr~rk~~~~l~~~~aqL~~v~~~l~~a~~~~~~   85 (196)
                      .+||.+.|.|+|+.++++++|++++.+||+.+..||-++||++||+||..|+|..+-+.+++++.+++.|-..+.++.++
T Consensus        18 ReLRkt~RdierdRr~me~~Ek~LElEIkk~Aa~GnndAcr~LAKQLV~lRkQKtrt~a~s~ki~s~~~QnK~M~s~~km   97 (208)
T KOG3231|consen   18 RELRKTQRDIERDRRAMEKQEKQLELEIKKMAAIGNNDACRVLAKQLVHLRKQKTRTFAVSSKITSMSTQNKVMNSQMKM   97 (208)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhHHHHHHhhhccccCCCCchhhHHHHHHHHHHHhcchHhhcC
Q psy15948         86 TQSMSGVVKAMDAAMKSMNLEKISGLMDKFEEQFEDLDVQSSYMENTMSQSVTTSVPQNDVDSLMKQVADEAGLELTMAL  165 (196)
Q Consensus        86 ~~~m~~~~~~m~~~n~~m~l~~i~~~m~~f~k~~~~~~~~~e~m~d~m~~~~~~~~~eeevd~lv~qv~~E~~~~~~~~l  165 (196)
                      +++|+..++.|+.||+.|+|+++..+|.+|++..++|++++|||+|++|+.++.++|+||.+.+|+||||||||++++.+
T Consensus        98 ~~AMgTTaKTM~amNk~M~pek~~~tmr~FQ~anmKMemTeEMiNDTLDdild~sgDeeEs~aiVNqVLDEIGIEisgKm  177 (208)
T KOG3231|consen   98 AGAMGTTAKTMQAMNKKMDPEKTLQTMRNFQKANMKMEMTEEMINDTLDDILDGSGDEEESQAIVNQVLDEIGIEISGKM  177 (208)
T ss_pred             HHHhchHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHhcCCCcHHHHHHHHHHHHHHhhhhhcchh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCcccc--ccccchHHHHHHHHHHhhc
Q psy15948        166 PSGPDSIAAS--SQVSQEQDELSQRLARLRQ  194 (196)
Q Consensus       166 ~~~p~~~~~~--~~~~~~~~~l~~RL~~Lr~  194 (196)
                      .++|++.+.|  .....+.+|+++.|++||+
T Consensus       178 a~~P~a~s~~~~st~kat~~Die~QLa~Lrs  208 (208)
T KOG3231|consen  178 AKAPSARSLPSASTSKATISDIERQLAALRS  208 (208)
T ss_pred             ccCCccCCCCccccCCCcHHHHHHHHHHhcC
Confidence            9999855544  2345678999999999985

>KOG3229|consensus

Probab=100.00  E-value=1.2e-38  Score=255.07  Aligned_cols=190  Identities=18%  Similarity=0.297  Sum_probs=172.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15948          5 LFNLKFAAKELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARIHAENAIRQKNQSINYLRMSARVDAVASRVQTALTTRK   84 (196)
Q Consensus         5 i~~Lr~~~r~l~Re~~kle~ee~k~~~~iKka~kkg~~~~aki~Ak~lvr~rk~~~~l~~~~aqL~~v~~~l~~a~~~~~   84 (196)
                      -..||...|.|+|+++.+++++++....||+++|+|+...|++|||++|+.|+++.++|..++||+||+++|..+.++..
T Consensus        20 q~kiRke~r~ldrqir~iqree~kv~~~iK~aAKknD~~t~~iLAKEiv~srk~v~Rly~sKAqlnSv~M~l~eqla~~r   99 (227)
T KOG3229|consen   20 QSKIRKEGRQLDRQIRDIQREEEKVQKSIKQAAKKNDKDTCRILAKEIVQSRKAVKRLYESKAQLNSVSMQLKEQLATLR   99 (227)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhHHHHHHHHHHHHH
Confidence            36799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhHHHHHHhhhccccCCCCchhhHHHHHHHHHHHhcchHhhc
Q psy15948         85 VTQSMSGVVKAMDAAMKSMNLEKISGLMDKFEEQFEDLDVQSSYMENTMSQSVTTSVPQNDVDSLMKQVADEAGLELTMA  164 (196)
Q Consensus        85 ~~~~m~~~~~~m~~~n~~m~l~~i~~~m~~f~k~~~~~~~~~e~m~d~m~~~~~~~~~eeevd~lv~qv~~E~~~~~~~~  164 (196)
                      ++++|++++.+|+.||+.+.+|++..||.+|+++|++.||++||++|+|+++.+.++.++++|++|++|+-+|..+-...
T Consensus       100 ~~G~lqkStevMk~v~sLvk~Pel~~TMrelSkEmmKaGIIEEmvdet~esv~d~eemeEe~deEVdkIL~~it~~~~~~  179 (227)
T KOG3229|consen  100 VAGSLQKSTEVMKAVNSLVKLPELAATMRELSKEMMKAGIIEEMVDETMESVEDSEEMEEEADEEVDKILTEITGEKAGE  179 (227)
T ss_pred             HHhhHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHhcccccc
Confidence            99999999999999999999999999999999999999999999999999999888899999999999999999877666


Q ss_pred             CCCCCCC----ccc----cc-----cc-----cchHHHHHHHHHHhhc
Q psy15948        165 LPSGPDS----IAA----SS-----QV-----SQEQDELSQRLARLRQ  194 (196)
Q Consensus       165 l~~~p~~----~~~----~~-----~~-----~~~~~~l~~RL~~Lr~  194 (196)
                      +|.+|..    +|+    |.     ..     .+...+++.||++||+
T Consensus       180 ~p~a~~~~~~~~~~~~a~p~~~~~a~~d~~e~eE~le~mr~RLa~lrs  227 (227)
T KOG3229|consen  180 APLAVTATLAAVPAEKASPSAKEDAAEDGVEEEEELEEMRSRLAALRS  227 (227)
T ss_pred             CCcchHHHHhcCccccCCCcchhhhhhccchHHHHHHHHHHHHHHhcC
Confidence            6666652    121    10     01     1235788889999995

>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7

Probab=99.94  E-value=2.9e-26  Score=181.34  Aligned_cols=166  Identities=32%  Similarity=0.440  Sum_probs=137.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15948          3 NHLFNLKFAAKELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARIHAENAIRQKNQSINYLRMSARVDAVASRVQTALTT   82 (196)
Q Consensus         3 ~~i~~Lr~~~r~l~Re~~kle~ee~k~~~~iKka~kkg~~~~aki~Ak~lvr~rk~~~~l~~~~aqL~~v~~~l~~a~~~   82 (196)
                      .+|+.|+.+.+.|++++.+|+...+++..+||+++++|+...|++|++..++.+++..+++....+|+++..+|+++..+
T Consensus         1 eai~~Lk~~~~~L~~~~~~le~~i~~~~~~~k~~~~~~~~~~A~~~lk~~k~~~k~~~~~~~~~~~l~~~~~~ie~a~~~   80 (171)
T PF03357_consen    1 EAILKLKKTIRRLEKQIKRLEKKIKKLEKKAKKAIKKGNKERAKIYLKRKKRLEKQLEKLLNQLSNLESVLLQIETAQSN   80 (171)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhHHHHHHhhhccccCCCCchhhHHHHHHHHHHHhcchH-
Q psy15948         83 RKVTQSMSGVVKAMDAAMKSMNLEKISGLMDKFEEQFEDLDVQSSYMENTMSQSVTTSVPQNDVDSLMKQVADEAGLEL-  161 (196)
Q Consensus        83 ~~~~~~m~~~~~~m~~~n~~m~l~~i~~~m~~f~k~~~~~~~~~e~m~d~m~~~~~~~~~eeevd~lv~qv~~E~~~~~-  161 (196)
                      ..+..+|+.++++|+.+|+.+++++|..+|++|.++++.++..+++|++.++..  .++++++++++++++++|++.+. 
T Consensus        81 ~~v~~al~~~~~~Lk~~~~~i~~~~v~~~~d~~~e~~e~~~ei~~~l~~~~~~~--~~~dd~ele~eL~~l~~e~~~~~~  158 (171)
T PF03357_consen   81 QQVVKALKQSSKALKKINKQINLDKVEKLMDDFQEEMEDQDEISEALSDSMDQV--DDVDDEELEEELEQLEDEIEEEEE  158 (171)
T ss_dssp             HHHSSS----SHHHHHHHHSTTSCCHHHHHHHHHHHHHHHTS------------------TTSTTCHHHHHHHCCCTTS-
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHccccCC--CCCCHHHHHHHHHHHHHHHhhhhh
Confidence            999999999999999999999999999999999999999999999998888765  34577899999999999999988 


Q ss_pred             -hhcCCCCCC
Q psy15948        162 -TMALPSGPD  170 (196)
Q Consensus       162 -~~~l~~~p~  170 (196)
                       ...||++|+
T Consensus       159 ~~~~lp~~P~  168 (171)
T PF03357_consen  159 EKQQLPSVPS  168 (171)
T ss_dssp             -SS-SS---H
T ss_pred             ccccCCcCCC
Confidence             777887775

The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.

>KOG2910|consensus

Probab=99.73  E-value=2.4e-15  Score=119.85  Aligned_cols=159  Identities=18%  Similarity=0.307  Sum_probs=138.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH---HHHHHH
Q psy15948          2 ENHLFNLKFAAKELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARIHAENAIRQKNQSINY-LRMSARVDA---VASRVQ   77 (196)
Q Consensus         2 ~~~i~~Lr~~~r~l~Re~~kle~ee~k~~~~iKka~kkg~~~~aki~Ak~lvr~rk~~~~l-~~~~aqL~~---v~~~l~   77 (196)
                      |++|+.|+.+.+.|-+..+++++....++..+|++++.|..+.|+.+.|    ++++...+ .++..||..   +.+.|+
T Consensus        15 DrAIL~lK~QRdkl~qyqkR~e~~le~Er~~Ar~lird~rKdrAlllLK----kKryQE~Ll~qt~~qL~nlEqmvsdiE   90 (209)
T KOG2910|consen   15 DRAILSLKTQRDKLKQYQKRLEKQLEAERQLARDLIRDGRKDRALLLLK----KKRYQEELLTQTDNQLINLEQMVSDIE   90 (209)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7899999999999999999999999999999999999999777776655    77777776 667777765   456789


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhHHHHHHhhhccccCCCCchhhHHHHHHHHHHHh
Q psy15948         78 TALTTRKVTQSMSGVVKAMDAAMKSMNLEKISGLMDKFEEQFEDLDVQSSYMENTMSQSVTTSVPQNDVDSLMKQVADEA  157 (196)
Q Consensus        78 ~a~~~~~~~~~m~~~~~~m~~~n~~m~l~~i~~~m~~f~k~~~~~~~~~e~m~d~m~~~~~~~~~eeevd~lv~qv~~E~  157 (196)
                      +.....+|+.+++.++.+++++|+.|+++.|.++|++-...+++.+-+.+|+++.|++     ++|+++.++++-+..|.
T Consensus        91 ft~vqk~V~~gLk~GN~~lkkl~~~~~ideV~rimddt~ea~~YQ~Ein~~L~~~ls~-----~dEddi~~EldaLese~  165 (209)
T KOG2910|consen   91 FTQVQKKVMEGLKQGNEALKKLQQEFDIDEVDRIMDDTQEAIEYQDEINAILSGSLSA-----EDEDDILAELDALESEL  165 (209)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhHHHHHHHHHHHHHHHHhhccc-----ccHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999998998888885     46777888888777776


Q ss_pred             cchHhhcCCCCCCC
Q psy15948        158 GLELTMALPSGPDS  171 (196)
Q Consensus       158 ~~~~~~~l~~~p~~  171 (196)
                      ..+  .++|.+|+.
T Consensus       166 ~~e--~e~PevPs~  177 (209)
T KOG2910|consen  166 EVE--AELPEVPST  177 (209)
T ss_pred             hhh--hhcCCCCCC
Confidence            554  578888874

>KOG1656|consensus

Probab=99.70  E-value=1e-14  Score=117.40  Aligned_cols=149  Identities=21%  Similarity=0.302  Sum_probs=127.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH
Q psy15948          2 ENHLFNLKFAAKELERNSKRCEKEEKAEKLK-TKKAIQKGNLEVARIHAENAIRQKNQSINYLRMSARVDAVASR---VQ   77 (196)
Q Consensus         2 ~~~i~~Lr~~~r~l~Re~~kle~ee~k~~~~-iKka~kkg~~~~aki~Ak~lvr~rk~~~~l~~~~aqL~~v~~~---l~   77 (196)
                      .++|-.||.+..-|.+....|++....+... +++...+|.    |...+.|-|+|.+..++.+....|.++..|   |+
T Consensus        20 ~eaI~kLrEteemL~KKqe~Le~ki~~e~e~~A~k~~tkNK----R~AlqaLkrKK~~E~qL~qidG~l~tie~Qr~alE   95 (221)
T KOG1656|consen   20 QEAIQKLRETEEMLEKKQEFLEKKIEQEVENNARKYGTKNK----RMALQALKRKKRYEKQLAQIDGTLSTIEFQREALE   95 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH----HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            3689999999999999999999998888544 888888866    555566667888999999999999999988   79


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhHHHHHHhhhccccC--CCCchhhHHHHHHHHHH
Q psy15948         78 TALTTRKVTQSMSGVVKAMDAAMKSMNLEKISGLMDKFEEQFEDLDVQSSYMENTMSQSVT--TSVPQNDVDSLMKQVAD  155 (196)
Q Consensus        78 ~a~~~~~~~~~m~~~~~~m~~~n~~m~l~~i~~~m~~f~k~~~~~~~~~e~m~d~m~~~~~--~~~~eeevd~lv~qv~~  155 (196)
                      ++..+..+..+|+.++++|+.+++.||+++|..+|+++..|.+.+    +-|+++++.+.+  .+.||||...+++.+.+
T Consensus        96 nA~~n~Evl~~m~~~A~AmK~~h~~mDiDkVdd~MdeI~eQqe~a----~eIseAiS~Pvg~~a~~DEDEL~~ELdeLeq  171 (221)
T KOG1656|consen   96 NANTNTEVLDAMGSAAKAMKAAHKNMDIDKVDDLMDEIAEQQEVA----EEISEAISAPVGFGADFDEDELMAELDELEQ  171 (221)
T ss_pred             cccccHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHH----HHHHHHHhCccccccccCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999853    457888888765  34788888888888776


Q ss_pred             Hhc
Q psy15948        156 EAG  158 (196)
Q Consensus       156 E~~  158 (196)
                      |..
T Consensus       172 eel  174 (221)
T KOG1656|consen  172 EEL  174 (221)
T ss_pred             HHH
Confidence            653

>PTZ00446 vacuolar sorting protein SNF7-like; Provisional

Probab=99.69  E-value=2e-14  Score=116.37  Aligned_cols=147  Identities=12%  Similarity=0.204  Sum_probs=119.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH---HHHHH
Q psy15948          2 ENHLFNLKFAAKELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARIHAENAIR-QKNQSINYLRMSARVDAV---ASRVQ   77 (196)
Q Consensus         2 ~~~i~~Lr~~~r~l~Re~~kle~ee~k~~~~iKka~kkg~~~~aki~Ak~lvr-~rk~~~~l~~~~aqL~~v---~~~l~   77 (196)
                      .++|+.||.+...|++...+|+....++...+|+++++|+...|.    .++| +|-+..++.++.+++..+   ...|+
T Consensus        26 ~~AIl~Lk~~~~~L~krq~~Le~kIe~e~~~Ak~~~~~~kk~~Al----~~LkrKK~~E~ql~q~~~ql~nLEq~~~~iE  101 (191)
T PTZ00446         26 YKAILKNREAIDALEKKQVQVEKKIKQLEIEAKQKVEQNQMSNAK----ILLKRKKLYEQEIENILNNRLTLEDNMINLE  101 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            478999999999999999999999999999999999999965544    4444 444555556666666654   55689


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhHHHHHHhhhccccCCCCchhhHHHHHHHHHHH
Q psy15948         78 TALTTRKVTQSMSGVVKAMDAAMKSMNLEKISGLMDKFEEQFEDLDVQSSYMENTMSQSVTTSVPQNDVDSLMKQVADE  156 (196)
Q Consensus        78 ~a~~~~~~~~~m~~~~~~m~~~n~~m~l~~i~~~m~~f~k~~~~~~~~~e~m~d~m~~~~~~~~~eeevd~lv~qv~~E  156 (196)
                      ++..+..+..+|+.++++|+.+|+.|++++|..+|+++..+++..+-    |+++++.+.....||+|++++++.+..|
T Consensus       102 ~a~~~~ev~~aLk~g~~aLK~~~k~~~idkVd~lmDei~E~~e~~~E----IseaLs~~~~~~~DEdELe~ELe~Le~e  176 (191)
T PTZ00446        102 NMHLHKIAVNALSYAANTHKKLNNEINTQKVEKIIDTIQENKDIQEE----INQALSFNLLNNVDDDEIDKELDLLKEQ  176 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH----HHHHHcCCCCCCCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999997544    5555555433346788888888877654

>PTZ00464 SNF-7-like protein; Provisional

Probab=99.63  E-value=1e-13  Score=114.15  Aligned_cols=164  Identities=12%  Similarity=0.180  Sum_probs=126.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Q psy15948          2 ENHLFNLKFAAKELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARIHAENAIRQKNQSI----NYLRMSARVDAVASRVQ   77 (196)
Q Consensus         2 ~~~i~~Lr~~~r~l~Re~~kle~ee~k~~~~iKka~kkg~~~~aki~Ak~lvr~rk~~~----~l~~~~aqL~~v~~~l~   77 (196)
                      .++|-.||.....|++.+.+++.+..+.+..+++.-..++ ...|..|..++|.||...    +++....+|+.+...|+
T Consensus        17 ~d~~~~l~~r~~~l~kKi~~ld~E~~~ak~~~k~~~~~~~-~~~K~~Al~~LK~KK~~E~ql~~l~~q~~nleq~~~~ie   95 (211)
T PTZ00464         17 EDASKRIGGRSEVVDARINKIDAELMKLKEQIQRTRGMTQ-SRHKQRAMQLLQQKRMYQNQQDMMMQQQFNMDQLQFTTE   95 (211)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5788999999999999999988877777766665432222 235777888888766444    45666777778889999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhHHHHHHhhhccccC--CCCchhhHHHHHHHHHH
Q psy15948         78 TALTTRKVTQSMSGVVKAMDAAMKSMNLEKISGLMDKFEEQFEDLDVQSSYMENTMSQSVT--TSVPQNDVDSLMKQVAD  155 (196)
Q Consensus        78 ~a~~~~~~~~~m~~~~~~m~~~n~~m~l~~i~~~m~~f~k~~~~~~~~~e~m~d~m~~~~~--~~~~eeevd~lv~qv~~  155 (196)
                      ++..+..+..+|+.++++|+.+|+.|++++|..+|+++..+++..+-    |+++|....+  .+.||+|++++++.+..
T Consensus        96 ~a~~~~~vv~amk~g~kaLK~~~k~i~id~Vd~l~Dei~E~~e~~~E----I~e~Ls~~~~~~~~~DEdELe~ELe~Le~  171 (211)
T PTZ00464         96 SVKDTKVQVDAMKQAAKTLKKQFKKLNVDKVEDLQDELADLYEDTQE----IQEIMGRAYDVPDDIDEDEMLGELDALDF  171 (211)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH----HHHHHhCCCCCCCCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999997544    5555555432  34688899999998888


Q ss_pred             HhcchHh----hcCCCCCC
Q psy15948        156 EAGLELT----MALPSGPD  170 (196)
Q Consensus       156 E~~~~~~----~~l~~~p~  170 (196)
                      |...+..    ...+++|+
T Consensus       172 e~~~e~~~~~l~~~~~~p~  190 (211)
T PTZ00464        172 DMEKEADASYLADALAVPG  190 (211)
T ss_pred             HHhccccchhhhccccCCC
Confidence            8643222    34556665

>COG5491 VPS24 Conserved protein implicated in secretion [Cell motility and secretion]

Probab=99.56  E-value=4e-13  Score=109.53  Aligned_cols=173  Identities=28%  Similarity=0.285  Sum_probs=118.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15948         15 LERNSKRCEKEEKAEKLKTKKAIQKGNL--EVARIHAENAIRQKNQSINYLRMSARVDAVASRVQTALTTRKVTQSMSGV   92 (196)
Q Consensus        15 l~Re~~kle~ee~k~~~~iKka~kkg~~--~~aki~Ak~lvr~rk~~~~l~~~~aqL~~v~~~l~~a~~~~~~~~~m~~~   92 (196)
                      +++++.++-.+.+...+...+..++-..  ...+++++.+.+.+++..|+...+       ++|++.-++....-+|.++
T Consensus         5 ~~~~~~k~~~~~k~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~~~srL~~~~-------sRLqs~~~~~~e~~~m~~v   77 (204)
T COG5491           5 LERQAKKLVRELKQEAKKGQVLLNEIAKKAPNRRRLAEELYKLRKARSRLDASI-------SRLQSLDTMLFEKVVMRQV   77 (204)
T ss_pred             HHHHHHHhhhhhhhHhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence            6777777777777777777666654432  334555555555555555555544       5555555555555555666


Q ss_pred             HHHHHHHHHhCC-HHHHHHHHHHHHHHHhhhhhHH---HHHHhhhccccC--CCCchhhHHHHHHHHHHHhcchHhhcCC
Q psy15948         93 VKAMDAAMKSMN-LEKISGLMDKFEEQFEDLDVQS---SYMENTMSQSVT--TSVPQNDVDSLMKQVADEAGLELTMALP  166 (196)
Q Consensus        93 ~~~m~~~n~~m~-l~~i~~~m~~f~k~~~~~~~~~---e~m~d~m~~~~~--~~~~eeevd~lv~qv~~E~~~~~~~~l~  166 (196)
                      +..|...+.+|| ++.|.++|+.|+..+.-++...   ++|.+.++.+.+  ..++.+++|++|++|++|+|+++.....
T Consensus        78 ~~~~~~a~~~mnel~~i~ri~~~~et~~~~mE~~~~~le~m~e~~~v~~~~~v~~~l~~lde~v~~v~pEi~lel~~~~~  157 (204)
T COG5491          78 SGDMAKAAMYMNELESIRRIMQLFETQFLALELVQLRLETMDELMDVVVGDPVLEDLEELDELVNKVLPEIGLELDESEQ  157 (204)
T ss_pred             hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhhhhHHHHHHHHHhhchhhhhhhhhHhh
Confidence            666666667777 8999999999999999999998   788777777764  3457799999999999999999985444


Q ss_pred             CCCC------Ccc---cccc-------ccchHHHHHHHHHHhhc
Q psy15948        167 SGPD------SIA---ASSQ-------VSQEQDELSQRLARLRQ  194 (196)
Q Consensus       167 ~~p~------~~~---~~~~-------~~~~~~~l~~RL~~Lr~  194 (196)
                      +.|.      +.|   +|.+       +...++.|..||..|++
T Consensus       158 ~~~~~~~~~~~~~a~~~~ea~~ileea~~~aE~~l~e~~~~L~~  201 (204)
T COG5491         158 SLPANVVENGSVPAAVSPEARKILEEAEKIAEDRLQERLRELPA  201 (204)
T ss_pred             cchhhhhcccccccccChhhhhhHHHHHhhHHHHHHHHHHhccc
Confidence            4443      111   1111       12358999999999985

>KOG2911|consensus

Probab=99.22  E-value=3.3e-09  Score=94.25  Aligned_cols=165  Identities=15%  Similarity=0.226  Sum_probs=139.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15948          2 ENHLFNLKFAAKELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARIHAENAIRQKNQSINYLRMSARVDAVASRVQTALT   81 (196)
Q Consensus         2 ~~~i~~Lr~~~r~l~Re~~kle~ee~k~~~~iKka~kkg~~~~aki~Ak~lvr~rk~~~~l~~~~aqL~~v~~~l~~a~~   81 (196)
                      |=.|.+|+.+.-.|.|++..|+.+-++...+++.+++.|....|..|++.--+.-|-..+....-.+|.+|-.+|.++.+
T Consensus       232 D~~V~~L~~~~~~L~kqie~L~qeie~~~~~~r~~~k~g~K~iA~~ylr~rk~~eK~~er~~~~l~~l~~vl~~Id~s~~  311 (439)
T KOG2911|consen  232 DGSVADLIQARAKLAKQIEFLEQEIEKSKEKLRQALKEGKKQIAITYLRARKLLEKDLERKVSSLNNLETVLSQIDNSQT  311 (439)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcc
Confidence            45688999999999999999999999999999999999999999999999888888899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHhhhhhHHHHHHhhhccccCC--CCchhhHHHHHHHHHHHhc
Q psy15948         82 TRKVTQSMSGVVKAMDAAMK-SMNLEKISGLMDKFEEQFEDLDVQSSYMENTMSQSVTT--SVPQNDVDSLMKQVADEAG  158 (196)
Q Consensus        82 ~~~~~~~m~~~~~~m~~~n~-~m~l~~i~~~m~~f~k~~~~~~~~~e~m~d~m~~~~~~--~~~eeevd~lv~qv~~E~~  158 (196)
                      +.-+..+++.++.+|+.++. ...++++..+|++...-++.    ++-++++|.+..-.  +.++|+++.++..++.+..
T Consensus       312 nkvvl~AyksGs~alK~il~~~~s~ekVed~Ldev~et~d~----~~EV~~~la~~~~~~~d~~de~lEkEL~~L~~D~~  387 (439)
T KOG2911|consen  312 NKVVLQAYKSGSEALKAILAQGGSTEKVEDVLDEVNETLDR----QEEVEDALASYNVNNIDFEDEDLEKELEDLEADEK  387 (439)
T ss_pred             cHHHHHHHHHhHHHHHHHHhccCChhhHHHHHHHHHHHHhh----HHHHHHHHhcCCCCCCccchHHHHHHHHHHHhccc
Confidence            99999999999999999999 56788899999999988885    45678888876533  4567788888888776655


Q ss_pred             chHhhcCCCCCC
Q psy15948        159 LELTMALPSGPD  170 (196)
Q Consensus       159 ~~~~~~l~~~p~  170 (196)
                      -+-+-.+|..|.
T Consensus       388 k~e~~~lp~~~~  399 (439)
T KOG2911|consen  388 KNEDLVLPLNSV  399 (439)
T ss_pred             cCCccCCCCCCc
Confidence            332223344443

>KOG1655|consensus

Probab=98.69  E-value=9.2e-06  Score=65.66  Aligned_cols=155  Identities=17%  Similarity=0.242  Sum_probs=118.0

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Q psy15948          1 MENHLFNLKFAAKELERNSKRCEKEEKAEKLKTKKAIQKGN-LEVARIHAENAIRQKNQSINY----LRMSARVDAVASR   75 (196)
Q Consensus         1 ~~~~i~~Lr~~~r~l~Re~~kle~ee~k~~~~iKka~kkg~-~~~aki~Ak~lvr~rk~~~~l----~~~~aqL~~v~~~   75 (196)
                      |.++|-.+......++..+.+|+.+--+.+.+|++. +-|. ..+.|.-|=.+++.|+.+.+.    +.-+=.|+.+.+.
T Consensus        17 L~dai~~v~~r~dSve~KIskLDaeL~k~~~Qi~k~-R~gpaq~~~KqrAlrVLkQKK~yE~q~d~L~~QsfNMeQa~~t   95 (218)
T KOG1655|consen   17 LQDAIDSVNKRSDSVEKKISKLDAELCKYKDQIKKT-RPGPAQNALKQRALRVLKQKKMYENQKDSLDQQSFNMEQANFT   95 (218)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhc-CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence            356788888889999999999999999999999988 4443 455666666666655544332    2222235566666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhHHHHHHhhhccccCCCCchhhHHHHHHHHHH
Q psy15948         76 VQTALTTRKVTQSMSGVVKAMDAAMKSMNLEKISGLMDKFEEQFEDLDVQSSYMENTMSQSVTTSVPQNDVDSLMKQVAD  155 (196)
Q Consensus        76 l~~a~~~~~~~~~m~~~~~~m~~~n~~m~l~~i~~~m~~f~k~~~~~~~~~e~m~d~m~~~~~~~~~eeevd~lv~qv~~  155 (196)
                      .++..-+...+.+|+.+.+.|+...+.+++++|...=+++.-=|+..+-++|.+.-..+.+.   .+|++.+.+++-+.+
T Consensus        96 ~e~LKdtq~Tv~AmK~~~k~mK~~ykkvnId~IedlQDem~Dlmd~a~EiQE~Lgr~y~~pe---ide~dL~aELdaL~~  172 (218)
T KOG1655|consen   96 AESLKDTQATVAAMKDTNKEMKKQYKKVNIDKIEDLQDEMEDLMDQADEIQEVLGRNYNTPD---IDEADLDAELDALGQ  172 (218)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC---cCHHHHHHHHHHHHh
Confidence            77777888889999999999999999999999988888888777777777776666555543   678888999999877


Q ss_pred             Hhcc
Q psy15948        156 EAGL  159 (196)
Q Consensus       156 E~~~  159 (196)
                      |.-.
T Consensus       173 E~d~  176 (218)
T KOG1655|consen  173 ELDM  176 (218)
T ss_pred             Hhhc
Confidence            7654

>COG5491 VPS24 Conserved protein implicated in secretion [Cell motility and secretion]

Probab=97.86  E-value=0.00079  Score=55.28  Aligned_cols=37  Identities=11%  Similarity=0.043  Sum_probs=20.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Q psy15948         77 QTALTTRKVTQSMSGVVKAMDAAMKSMNLEKISGLMD  113 (196)
Q Consensus        77 ~~a~~~~~~~~~m~~~~~~m~~~n~~m~l~~i~~~m~  113 (196)
                      ....++.++++.|.+++..|..+.....+++.-.|+.
T Consensus        69 ~e~~~m~~v~~~~~~a~~~mnel~~i~ri~~~~et~~  105 (204)
T COG5491          69 FEKVVMRQVSGDMAKAAMYMNELESIRRIMQLFETQF  105 (204)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555556666666666655555555555444444

>PTZ00464 SNF-7-like protein; Provisional

Probab=97.63  E-value=0.027  Score=46.62  Aligned_cols=50  Identities=8%  Similarity=0.094  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15948         47 IHAENAIRQKNQSINYLRMSARVDAVASRVQTALTTRKVTQSMSGVVKAM   96 (196)
Q Consensus        47 i~Ak~lvr~rk~~~~l~~~~aqL~~v~~~l~~a~~~~~~~~~m~~~~~~m   96 (196)
                      .|=+++-+...+..++..+...++.......+..++..-+.+|++..+-|
T Consensus        72 ~~E~ql~~l~~q~~nleq~~~~ie~a~~~~~vv~amk~g~kaLK~~~k~i  121 (211)
T PTZ00464         72 MYQNQQDMMMQQQFNMDQLQFTTESVKDTKVQVDAMKQAAKTLKKQFKKL  121 (211)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            44444455555555555555555555555555555555555555555444

>PRK10698 phage shock protein PspA; Provisional

Probab=97.62  E-value=0.012  Score=49.10  Aligned_cols=109  Identities=14%  Similarity=0.181  Sum_probs=82.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH-------HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Q psy15948         10 FAAKELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARI-------HAENAIRQKNQSINYL----RMSARVDAVASRVQT   78 (196)
Q Consensus        10 ~~~r~l~Re~~kle~ee~k~~~~iKka~kkg~~~~aki-------~Ak~lvr~rk~~~~l~----~~~aqL~~v~~~l~~   78 (196)
                      -..+.++|+...++....+...++..|+.+|+-+-||-       |+..+-..+.+.....    .+..++..+..+|..
T Consensus        52 A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~e  131 (222)
T PRK10698         52 AEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSE  131 (222)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45678999999999999999999999999999999998       8888777777666553    445666677777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q psy15948         79 ALTTRKVTQSMSGVVKAMDAAMKSMNLEKISGLMDKFEEQ  118 (196)
Q Consensus        79 a~~~~~~~~~m~~~~~~m~~~n~~m~l~~i~~~m~~f~k~  118 (196)
                      +.+-..+..+=..++.+..++|..+.--.....|..|++=
T Consensus       132 ak~k~~~L~aR~~~A~a~~~~~~~~~~~~~~~a~~~f~rm  171 (222)
T PRK10698        132 TRARQQALMLRHQAASSSRDVRRQLDSGKLDEAMARFESF  171 (222)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence            7777777776666666666666666555555666665543

>PF03398 Ist1: Regulator of Vps4 activity in the MVB pathway; InterPro: IPR005061 This is a eukaryotic protein family of unknown function

Probab=97.20  E-value=0.0053  Score=48.84  Aligned_cols=149  Identities=17%  Similarity=0.307  Sum_probs=104.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15948          7 NLKFAAKELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARIHAENAIRQKNQSINYLRMSARVDAVASRVQTALTTRKVT   86 (196)
Q Consensus         7 ~Lr~~~r~l~Re~~kle~ee~k~~~~iKka~kkg~~~~aki~Ak~lvr~rk~~~~l~~~~aqL~~v~~~l~~a~~~~~~~   86 (196)
                      .||..+..|.-..++.....+..+.+|-..++.|+.+.|++-+.++|+-.+...-|.-+.--.+-+..++.........-
T Consensus         3 ~lkla~~Rl~~l~~K~~~~~~~~rkdIa~LL~~g~~~~Ar~rvE~li~ed~~~e~~e~Le~yce~l~~r~~~i~~~k~~p   82 (165)
T PF03398_consen    3 QLKLAISRLKLLQNKRQAQAKQARKDIAQLLKNGKEESARIRVEQLIREDNMIEAYEILELYCELLLARFSLIEKSKECP   82 (165)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCT-TSSS
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCC
Confidence            57888889999999999999999999999999999999999999999999999999888888888888876666555444


Q ss_pred             HHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHhhhhhHHHHHHhhhccc-----------cCC-CCchhhHHHHHHHH
Q psy15948         87 QSMSGVVKAMDAAMKS-MNLEKISGLMDKFEEQFEDLDVQSSYMENTMSQS-----------VTT-SVPQNDVDSLMKQV  153 (196)
Q Consensus        87 ~~m~~~~~~m~~~n~~-m~l~~i~~~m~~f~k~~~~~~~~~e~m~d~m~~~-----------~~~-~~~eeevd~lv~qv  153 (196)
                      ..+..+...+=.+... -++|++..+-.-|..-+-+     +++..++++.           ... .-+++.++..+..|
T Consensus        83 ~~l~eAi~siiyAa~r~~elpEL~~vr~~l~~kyG~-----~f~~~a~~~~~~~Vn~~iv~kLs~~~p~~~~v~~~L~eI  157 (165)
T PF03398_consen   83 PELKEAISSIIYAAPRCGELPELQEVRKQLAEKYGK-----EFVEAAMENRDNGVNPRIVEKLSVKPPSEELVEKYLKEI  157 (165)
T ss_dssp             CCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHCCC-H-----HHHHHHHTTTTTTS-HHHHHHCS-S---CCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHhCH-----HHHHHHHHhcCCCcCHHHHHHcCCCCcCHHHHHHHHHHH
Confidence            4455555544344444 5888876665554433222     3333333321           111 12457788999999


Q ss_pred             HHHhcch
Q psy15948        154 ADEAGLE  160 (196)
Q Consensus       154 ~~E~~~~  160 (196)
                      +.|+|++
T Consensus       158 A~e~~i~  164 (165)
T PF03398_consen  158 AKEYGIP  164 (165)
T ss_dssp             HHHCT-S
T ss_pred             HHHcCCC
Confidence            9999875

; PDB: 3GGZ_B 3GGY_B 3FRR_A 3FRS_A.

>TIGR02977 phageshock_pspA phage shock protein A

Probab=97.02  E-value=0.15  Score=42.23  Aligned_cols=113  Identities=16%  Similarity=0.185  Sum_probs=65.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH-------H----HHHHHHHHHHHHHHHHH
Q psy15948          9 KFAAKELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARIHAENAIRQKNQS-------I----NYLRMSARVDAVASRVQ   77 (196)
Q Consensus         9 r~~~r~l~Re~~kle~ee~k~~~~iKka~kkg~~~~aki~Ak~lvr~rk~~-------~----~l~~~~aqL~~v~~~l~   77 (196)
                      .-..+.++|+...++....+...+++.|+.+|+-+.||-.+..-.......       .    ....+..+|..+..+++
T Consensus        51 ~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~  130 (219)
T TIGR02977        51 IADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALIEKQKAQELAEALERELAAVEETLAKLQEDIAKLQAKLA  130 (219)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345677889999999999999999999999999988886644322222222       1    22334444445555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhh
Q psy15948         78 TALTTRKVTQSMSGVVKAMDAAMKSMNLEKISGLMDKFEEQFED  121 (196)
Q Consensus        78 ~a~~~~~~~~~m~~~~~~m~~~n~~m~l~~i~~~m~~f~k~~~~  121 (196)
                      .+.+......+=..++..-..+|..+.--.+...+..|++-.++
T Consensus       131 ~~k~k~~~l~ar~~~A~a~~~~~~~~~~~~~~~a~~~fer~e~k  174 (219)
T TIGR02977       131 EARARQKALAIRHQAASSRLDVRRQLDSGRSDEAMARFEQYERR  174 (219)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence            55555554333333444444444444322334445555443333

Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.

>KOG3230|consensus

Probab=96.94  E-value=0.072  Score=43.41  Aligned_cols=148  Identities=16%  Similarity=0.205  Sum_probs=79.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15948          2 ENHLFNLKFAAKELERNSKRCEKEEKAEKLKTKKA---IQKGNLEVARIHAENAIRQKNQSINYLRMSARVDAVASRVQT   78 (196)
Q Consensus         2 ~~~i~~Lr~~~r~l~Re~~kle~ee~k~~~~iKka---~kkg~~~~aki~Ak~lvr~rk~~~~l~~~~aqL~~v~~~l~~   78 (196)
                      ..++++|-+....++-+-++|=-+-|+.-+.=.-.   +-..+.--.|-|.+.++..|.   ++...+-++.++-++-..
T Consensus        22 ~~a~ReleRer~~le~qeKklvaeIKk~AK~gq~~A~KimAkdLvRtR~~i~kf~~~ka---qiqaVSl~iQtlkss~sm   98 (224)
T KOG3230|consen   22 NKATRELERERQKLELQEKKLVAEIKKTAKQGQMDAVKIMAKDLVRTRRYIKKFQNMKA---QIQAVSLRIQTLKSSTSM   98 (224)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhHHHH
Confidence            45666666666666666666655555432211100   001123334556666555544   345556677777777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHH--HHH-hCCHHHHHHHHHHHHHHHhhhhhHHHHHHhhhccccCCCCchhhHHHHHHHHHH
Q psy15948         79 ALTTRKVTQSMSGVVKAMDA--AMK-SMNLEKISGLMDKFEEQFEDLDVQSSYMENTMSQSVTTSVPQNDVDSLMKQVAD  155 (196)
Q Consensus        79 a~~~~~~~~~m~~~~~~m~~--~n~-~m~l~~i~~~m~~f~k~~~~~~~~~e~m~d~m~~~~~~~~~eeevd~lv~qv~~  155 (196)
                      +.+|.-++++|.+.++.|.-  +.+ .+..++-. -+.++..+|+     .+.|+|+|++..++++-++=|..+++.+=-
T Consensus        99 a~aMkGaTkam~~MNrqmnlpq~qkIm~eFekQs-e~Mdm~~Emm-----~daIDdal~~~edEEEtd~lvnqVLDEiGv  172 (224)
T KOG3230|consen   99 AQAMKGATKAMAGMNRQMNLPQIQKIMQEFEKQS-EIMDMKEEMM-----DDAIDDALGDDEDEEETDDLVNQVLDEIGV  172 (224)
T ss_pred             HHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHH-HHHHHHHHHH-----HHHHHHhhcccchhHHHHHHHHHHHHHHcc
Confidence            77777777777766655521  111 11122222 2233333333     467778887666666666666666666544


Q ss_pred             Hhc
Q psy15948        156 EAG  158 (196)
Q Consensus       156 E~~  158 (196)
                      .++
T Consensus       173 dl~  175 (224)
T KOG3230|consen  173 DLA  175 (224)
T ss_pred             cHH
Confidence            444

>KOG3231|consensus

Probab=96.80  E-value=0.16  Score=40.43  Aligned_cols=171  Identities=16%  Similarity=0.205  Sum_probs=105.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15948          3 NHLFNLKFAAKELERNSKRCEKEEKAEKLK---------TKKAIQKGNLEVARIHAENAIRQKNQSINYLRMSARVDAVA   73 (196)
Q Consensus         3 ~~i~~Lr~~~r~l~Re~~kle~ee~k~~~~---------iKka~kkg~~~~aki~Ak~lvr~rk~~~~l~~~~aqL~~v~   73 (196)
                      ++-.+|-+..|.++++-++||.+-++.-..         +|+.+.-.+ ...|.||-        ..+...+..|=-.+.
T Consensus        22 kt~RdierdRr~me~~Ek~LElEIkk~Aa~GnndAcr~LAKQLV~lRk-QKtrt~a~--------s~ki~s~~~QnK~M~   92 (208)
T KOG3231|consen   22 KTQRDIERDRRAMEKQEKQLELEIKKMAAIGNNDACRVLAKQLVHLRK-QKTRTFAV--------SSKITSMSTQNKVMN   92 (208)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHH-hhhhhhhh--------hhhhhhhHHHHHHHH
Confidence            355677888889999999998888876432         222221111 12344443        445555555556677


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH--HHHHHhCCHHHHHHHHHHHHHHHhhhhhHHHHHHhhhccccCCCCchhhHHHHHH
Q psy15948         74 SRVQTALTTRKVTQSMSGVVKAM--DAAMKSMNLEKISGLMDKFEEQFEDLDVQSSYMENTMSQSVTTSVPQNDVDSLMK  151 (196)
Q Consensus        74 ~~l~~a~~~~~~~~~m~~~~~~m--~~~n~~m~l~~i~~~m~~f~k~~~~~~~~~e~m~d~m~~~~~~~~~eeevd~lv~  151 (196)
                      +++..+.++...++.|+...+.|  .++..+|.-=+...-=.++..+     |+.+.++|.++.+.+.++...-|..+++
T Consensus        93 s~~km~~AMgTTaKTM~amNk~M~pek~~~tmr~FQ~anmKMemTeE-----MiNDTLDdild~sgDeeEs~aiVNqVLD  167 (208)
T KOG3231|consen   93 SQMKMAGAMGTTAKTMQAMNKKMDPEKTLQTMRNFQKANMKMEMTEE-----MINDTLDDILDGSGDEEESQAIVNQVLD  167 (208)
T ss_pred             HHHHHHHHhchHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhhhHHH-----HHHhhHHHHhcCCCcHHHHHHHHHHHHH
Confidence            77777777777888888877777  3444444332222222334444     4458899999999887777888899999


Q ss_pred             HHHHHhcchHhhcCCCC-CC--CccccccccchHHHHHHHH
Q psy15948        152 QVADEAGLELTMALPSG-PD--SIAASSQVSQEQDELSQRL  189 (196)
Q Consensus       152 qv~~E~~~~~~~~l~~~-p~--~~~~~~~~~~~~~~l~~RL  189 (196)
                      .|==|+...+.. +|++ |.  +...+..-.+-++.| ++|
T Consensus       168 EIGIEisgKma~-~P~a~s~~~~st~kat~~Die~QL-a~L  206 (208)
T KOG3231|consen  168 EIGIEISGKMAK-APSARSLPSASTSKATISDIERQL-AAL  206 (208)
T ss_pred             Hhhhhhcchhcc-CCccCCCCccccCCCcHHHHHHHH-HHh
Confidence            999999887754 4433 33  333333323344555 444

>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription

Probab=96.79  E-value=0.23  Score=40.86  Aligned_cols=117  Identities=15%  Similarity=0.256  Sum_probs=74.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHH
Q psy15948          5 LFNLKFAAKELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARIHAENAIRQKNQSINYLR-----------MSARVDAVA   73 (196)
Q Consensus         5 i~~Lr~~~r~l~Re~~kle~ee~k~~~~iKka~kkg~~~~aki~Ak~lvr~rk~~~~l~~-----------~~aqL~~v~   73 (196)
                      +-......+.+++++..++....+...+++.|+.+|+-+.|+.++........+...|..           ++.++..+.
T Consensus        46 ~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~  125 (221)
T PF04012_consen   46 LARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELE  125 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445566778889999999999999999999999999999999888877776666555433           333344445


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHhh
Q psy15948         74 SRVQTALTTRKVTQSMSGVVKAMDAAMKSM---NLEKISGLMDKFEEQFED  121 (196)
Q Consensus        74 ~~l~~a~~~~~~~~~m~~~~~~m~~~n~~m---~l~~i~~~m~~f~k~~~~  121 (196)
                      .+|....+-..+..+-..++.+-..++..+   ++......+..++.....
T Consensus       126 ~kl~e~k~k~~~l~ar~~~a~a~~~~~~~~~~~~~~~a~~~~er~e~ki~~  176 (221)
T PF04012_consen  126 AKLEELKSKREELKARENAAKAQKKVNEALASFSVSSAMDSFERMEEKIEE  176 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHHHHH
Confidence            555555555555555444444444444433   333334444444444443

The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].

>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7

Probab=95.90  E-value=0.094  Score=40.89  Aligned_cols=147  Identities=20%  Similarity=0.230  Sum_probs=82.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15948         11 AAKELERNSKRCEKEEKAEKLKTKKA---IQKGNLEVARIHAENAIRQKNQSINYLRMSARVDAVASRVQTALTTRKVTQ   87 (196)
Q Consensus        11 ~~r~l~Re~~kle~ee~k~~~~iKka---~kkg~~~~aki~Ak~lvr~rk~~~~l~~~~aqL~~v~~~l~~a~~~~~~~~   87 (196)
                      ++..|...+.+|++...++..+|++.   +++--..+-+..|+.+.|.++..   .+...++.....+|+........+.
T Consensus         2 ai~~Lk~~~~~L~~~~~~le~~i~~~~~~~k~~~~~~~~~~A~~~lk~~k~~---~k~~~~~~~~~~~l~~~~~~ie~a~   78 (171)
T PF03357_consen    2 AILKLKKTIRRLEKQIKRLEKKIKKLEKKAKKAIKKGNKERAKIYLKRKKRL---EKQLEKLLNQLSNLESVLLQIETAQ   78 (171)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCTT-HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57889999999999999999998865   33333344556777777766654   4445567788888889899888888


Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHH--HHHHHHhhhhh---HHHHHHhhhccccCCCCchhhHHHHHHHHHHHhcchHh
Q psy15948         88 SMSGVVKAMDAAMKSMNLEKISGLMD--KFEEQFEDLDV---QSSYMENTMSQSVTTSVPQNDVDSLMKQVADEAGLELT  162 (196)
Q Consensus        88 ~m~~~~~~m~~~n~~m~l~~i~~~m~--~f~k~~~~~~~---~~e~m~d~m~~~~~~~~~eeevd~lv~qv~~E~~~~~~  162 (196)
                      ....+..+|+..++.+.  ++.+.|+  +.+.-++.+.-   ..+.++++|++.  .....+.-|+.++..++++.-+..
T Consensus        79 ~~~~v~~al~~~~~~Lk--~~~~~i~~~~v~~~~d~~~e~~e~~~ei~~~l~~~--~~~~~~~dd~ele~eL~~l~~e~~  154 (171)
T PF03357_consen   79 SNQQVVKALKQSSKALK--KINKQINLDKVEKLMDDFQEEMEDQDEISEALSDS--MDQVDDVDDEELEEELEQLEDEIE  154 (171)
T ss_dssp             HHHHHSSS----SHHHH--HHHHSTTSCCHHHHHHHHHHHHHHHTS------------------TTSTTCHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHHHHH--HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHcc--ccCCCCCCHHHHHHHHHHHHHHHh
Confidence            88888888888776643  3443333  23333332211   112222222221  011134556677777777766554


Q ss_pred             hc
Q psy15948        163 MA  164 (196)
Q Consensus       163 ~~  164 (196)
                      ..
T Consensus       155 ~~  156 (171)
T PF03357_consen  155 EE  156 (171)
T ss_dssp             TT
T ss_pred             hh
Confidence            43

The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.

>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]

Probab=94.58  E-value=2.3  Score=35.50  Aligned_cols=115  Identities=17%  Similarity=0.210  Sum_probs=73.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHH
Q psy15948          4 HLFNLKFAAKELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARIHAENAIRQKNQSINY-----------LRMSARVDAV   72 (196)
Q Consensus         4 ~i~~Lr~~~r~l~Re~~kle~ee~k~~~~iKka~kkg~~~~aki~Ak~lvr~rk~~~~l-----------~~~~aqL~~v   72 (196)
                      ++-.+.-..+.++|+...+.....+...+++.|+.+||.+.|+-.+...-..-+....+           .+++.++..+
T Consensus        46 ~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~L  125 (225)
T COG1842          46 ALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAAL  125 (225)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34456677899999999999999999999999999999887776554433322222222           2333344444


Q ss_pred             HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhh
Q psy15948         73 ASRV---QTALTTRKVTQSMSGVVKAMDAAMKSMNLEKISGLMDKFEEQFED  121 (196)
Q Consensus        73 ~~~l---~~a~~~~~~~~~m~~~~~~m~~~n~~m~l~~i~~~m~~f~k~~~~  121 (196)
                      ..+|   .+-..+.....+..+++.-|..+...++.   ...|..|++--++
T Consensus       126 e~Ki~e~~~~~~~l~ar~~~akA~~~v~~~~~~~s~---~sa~~~fer~e~k  174 (225)
T COG1842         126 EQKIAELRAKKEALKARKAAAKAQEKVNRSLGGGSS---SSAMAAFERMEEK  174 (225)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc---hhhHHHHHHHHHH
Confidence            4444   33344444445566666667777777777   4555555544444

>PTZ00446 vacuolar sorting protein SNF7-like; Provisional

Probab=94.58  E-value=2.1  Score=34.94  Aligned_cols=29  Identities=17%  Similarity=0.040  Sum_probs=19.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15948          8 LKFAAKELERNSKRCEKEEKAEKLKTKKA   36 (196)
Q Consensus         8 Lr~~~r~l~Re~~kle~ee~k~~~~iKka   36 (196)
                      .+.++-.|...+..|++-+..+..+|.+.
T Consensus        25 ~~~AIl~Lk~~~~~L~krq~~Le~kIe~e   53 (191)
T PTZ00446         25 IYKAILKNREAIDALEKKQVQVEKKIKQL   53 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556667777777777777777776554

>KOG3229|consensus

Probab=91.52  E-value=7  Score=32.30  Aligned_cols=162  Identities=9%  Similarity=0.125  Sum_probs=84.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15948          5 LFNLKFAAKELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARIHAENAIRQKNQSINYLRMSARVDAVASRVQTALTTRK   84 (196)
Q Consensus         5 i~~Lr~~~r~l~Re~~kle~ee~k~~~~iKka~kkg~~~~aki~Ak~lvr~rk~~~~l~~~~aqL~~v~~~l~~a~~~~~   84 (196)
                      ..+++.-+|.=-|++.+.=+.-..+..++++++|.-=...=+.-++-   .=|++-+-.+.-.+|-.=..+|.      .
T Consensus        16 ~r~wq~kiRke~r~ldrqir~iqree~kv~~~iK~aAKknD~~t~~i---LAKEiv~srk~v~Rly~sKAqln------S   86 (227)
T KOG3229|consen   16 VREWQSKIRKEGRQLDRQIRDIQREEEKVQKSIKQAAKKNDKDTCRI---LAKEIVQSRKAVKRLYESKAQLN------S   86 (227)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH---HHHHHHHHHHHHHHHHHhHHHHh------h
Confidence            34455555555555555556666677777777764332222222211   22223333333333322223332      2


Q ss_pred             HHHHHHHHHHHHHHHHHhCCHHHHHHHHHH---------HHHHHhhhhhHHHHHHhhhccccCCCCchhhHHHHHHHHHH
Q psy15948         85 VTQSMSGVVKAMDAAMKSMNLEKISGLMDK---------FEEQFEDLDVQSSYMENTMSQSVTTSVPQNDVDSLMKQVAD  155 (196)
Q Consensus        85 ~~~~m~~~~~~m~~~n~~m~l~~i~~~m~~---------f~k~~~~~~~~~e~m~d~m~~~~~~~~~eeevd~lv~qv~~  155 (196)
                      +.-.|+..-..+.-++..-+-.+|-+.|+.         .-.++.+-=++.-+|...++..++...|.+|.++.++.-.+
T Consensus        87 v~M~l~eqla~~r~~G~lqkStevMk~v~sLvk~Pel~~TMrelSkEmmKaGIIEEmvdet~esv~d~eemeEe~deEVd  166 (227)
T KOG3229|consen   87 VSMQLKEQLATLRVAGSLQKSTEVMKAVNSLVKLPELAATMRELSKEMMKAGIIEEMVDETMESVEDSEEMEEEADEEVD  166 (227)
T ss_pred             HHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHH
Confidence            333344444444333333333333333333         23344444466677888899998887777778899999999


Q ss_pred             HhcchHhh-cCCCCCCCcccc
Q psy15948        156 EAGLELTM-ALPSGPDSIAAS  175 (196)
Q Consensus       156 E~~~~~~~-~l~~~p~~~~~~  175 (196)
                      .+...+.+ .++.+|.++...
T Consensus       167 kIL~~it~~~~~~~p~a~~~~  187 (227)
T KOG3229|consen  167 KILTEITGEKAGEAPLAVTAT  187 (227)
T ss_pred             HHHHHHhccccccCCcchHHH
Confidence            88887753 445555555444

>KOG1656|consensus

Probab=91.46  E-value=7.1  Score=32.22  Aligned_cols=134  Identities=11%  Similarity=0.154  Sum_probs=90.7

Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH
Q psy15948         22 CEKEEKAEKLKTKKAIQKGNLEVARIHAENAIRQKNQSINYLRMSARVDAVASRVQTALTTRKVTQSMSGVVKAM--DAA   99 (196)
Q Consensus        22 le~ee~k~~~~iKka~kkg~~~~aki~Ak~lvr~rk~~~~l~~~~aqL~~v~~~l~~a~~~~~~~~~m~~~~~~m--~~~   99 (196)
                      ..+--.+-+.-+..|+++.     |.|=++|.+.-.....+..-.--|.+.....++...+..-+++|+.+-..|  .+|
T Consensus        52 A~k~~tkNKR~AlqaLkrK-----K~~E~qL~qidG~l~tie~Qr~alEnA~~n~Evl~~m~~~A~AmK~~h~~mDiDkV  126 (221)
T KOG1656|consen   52 ARKYGTKNKRMALQALKRK-----KRYEKQLAQIDGTLSTIEFQREALENANTNTEVLDAMGSAAKAMKAAHKNMDIDKV  126 (221)
T ss_pred             HHHHhhhhHHHHHHHHHHH-----HHHHHHHHHHhhHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHhccChhHH
Confidence            3344444555566666654     568888888887777776656667777778888888888888898888887  677


Q ss_pred             HHhCC-HHHHHHHHHHHHHHHhhhhhHHHHHHhhhc--cccCCCCchhhHHHHHHHHHHHhcchHhh---cCCCCCC
Q psy15948        100 MKSMN-LEKISGLMDKFEEQFEDLDVQSSYMENTMS--QSVTTSVPQNDVDSLMKQVADEAGLELTM---ALPSGPD  170 (196)
Q Consensus       100 n~~m~-l~~i~~~m~~f~k~~~~~~~~~e~m~d~m~--~~~~~~~~eeevd~lv~qv~~E~~~~~~~---~l~~~p~  170 (196)
                      ...|| +..=+.++.+++          +.|+.=+.  ..+|+++-..|.|+|-+..++.-.+++..   .||.+|+
T Consensus       127 dd~MdeI~eQqe~a~eIs----------eAiS~Pvg~~a~~DEDEL~~ELdeLeqeeld~~ll~~~~p~v~LP~vPs  193 (221)
T KOG1656|consen  127 DDLMDEIAEQQEVAEEIS----------EAISAPVGFGADFDEDELMAELDELEQEELDKELLDIRAPPVPLPDVPS  193 (221)
T ss_pred             HHHHHHHHHHHHHHHHHH----------HHHhCccccccccCHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCc
Confidence            77775 333344555554          35555443  33676777788888888888888777654   3444444

>KOG3232|consensus

Probab=86.20  E-value=16  Score=29.46  Aligned_cols=161  Identities=16%  Similarity=0.190  Sum_probs=97.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHHHHHHHH--------HHHHHHHHHHHHHHHHH
Q psy15948         13 KELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARIHAENAIRQ-KNQSINYLRMS--------ARVDAVASRVQTALTTR   83 (196)
Q Consensus        13 r~l~Re~~kle~ee~k~~~~iKka~kkg~~~~aki~Ak~lvr~-rk~~~~l~~~~--------aqL~~v~~~l~~a~~~~   83 (196)
                      -.|++.+..|..-.+.+....++|=|--..+.+|  ++-+|.+ ...+.|.|.--        -++--+++++..-.+-.
T Consensus         5 ~~le~~lf~LkF~sk~L~r~a~kceKeEK~Ek~K--~kkAi~kgN~dvArIyAeNAIRkkne~~n~LrlssRvDAVaaRv   82 (203)
T KOG3232|consen    5 DKLENHLFDLKFTSKQLQRQAKKCEKEEKAEKAK--LKKAIQKGNMDVARIYAENAIRKKNEAVNYLRLSSRVDAVAARV   82 (203)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH--HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4577888888888999998988887766666655  4555665 33444444322        23346788999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhHH---HHHHhhhccccCCCCchhhHHHHHHHHHHHhcch
Q psy15948         84 KVTQSMSGVVKAMDAAMKSMNLEKISGLMDKFEEQFEDLDVQS---SYMENTMSQSVTTSVPQNDVDSLMKQVADEAGLE  160 (196)
Q Consensus        84 ~~~~~m~~~~~~m~~~n~~m~l~~i~~~m~~f~k~~~~~~~~~---e~m~d~m~~~~~~~~~eeevd~lv~qv~~E~~~~  160 (196)
                      +.+-.|.++++.|.++-+.|+-.=-.-.+..++.-|++..-.=   ++=...|+..+++.+.-.--..-|+.+.++..=+
T Consensus        83 qTavtmr~Vt~sM~gVvK~md~alktmNLekis~~MDkFE~qFedldvqt~~me~~m~~st~l~tpq~~Vd~Lmq~vADe  162 (203)
T KOG3232|consen   83 QTAVTMRKVTKSMAGVVKSMDSALKTMNLEKISQLMDKFEKQFEDLDVQTEVMEKAMSGSTALSTPQGDVDSLMQQVADE  162 (203)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhHHHHHHHhccCcccccCChhHHHHHHHHHHHH
Confidence            9999999999999999888775332222333333333221111   1111234444444333333356777777777766


Q ss_pred             HhhcCCC-CCCCcccc
Q psy15948        161 LTMALPS-GPDSIAAS  175 (196)
Q Consensus       161 ~~~~l~~-~p~~~~~~  175 (196)
                      .+-.|.. .|..+++.
T Consensus       163 aGlElnq~lp~~~~~a  178 (203)
T KOG3232|consen  163 AGLELNQELPQNVVPA  178 (203)
T ss_pred             hchhhhhcCCCCCCCC
Confidence            6655543 44455443

>PRK15039 transcriptional repressor RcnR to maintain nickel and cobalt homeostasis; Provisional

Probab=83.29  E-value=14  Score=26.47  Aligned_cols=49  Identities=12%  Similarity=0.209  Sum_probs=40.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy15948         55 QKNQSINYLRMSARVDAVASRVQTALTTRKVTQSMSGVVKAMDAAMKSM  103 (196)
Q Consensus        55 ~rk~~~~l~~~~aqL~~v~~~l~~a~~~~~~~~~m~~~~~~m~~~n~~m  103 (196)
                      +++-..||-+..+|+.+|..-++.-.....+...+..+-.++.++...+
T Consensus         8 k~~ll~RL~RIeGQv~gI~~Miee~~~C~dIl~Ql~Avr~Al~~~~~~v   56 (90)
T PRK15039          8 KQKLKARASKIQGQVVALKKMLDEPHECAAVLQQIAAIRGAVNGLMREV   56 (90)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            5567789999999999999999988888888888888888777665544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	196
3eab_G	50	Crystal Structure Of Spastin Mit In Complex With Es		7e-09

>pdb|3EAB|G Chain G, Crystal Structure Of Spastin Mit In Complex With Escrt Iii Length = 50

Iteration: 1
 Score = 56.6 bits (135), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 29/48 (60%), Positives = 35/48 (72%)
Query: 146 VDSLMKQVADEAGLELTMALPSGPDSIAASSQVSQEQDELSQRLARLR 193
           VD L++++ADEAGL+L M LP G      +S  S EQDELSQRLARLR
Sbjct: 2   VDMLLQEMADEAGLDLNMELPQGQTGSVGTSVASAEQDELSQRLARLR 49

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	196
2gd5_A	179	Charged multivesicular BODY protein 3; CHMP3, ESCR	3e-31
3frt_A	218	Charged multivesicular BODY protein 3; ESCRT, ESCR	5e-31
3eab_G	50	CHMP1B; spastin, MIT, ESCRT, alternative splicing,	1e-14
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05

>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A Length = 179

 Score =  111 bits (278), Expect = 3e-31
 Identities = 26/167 (15%), Positives = 64/167 (38%)

Query: 1   MENHLFNLKFAAKELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARIHAENAIRQKNQSI 60
           +      ++   + ++R  +  ++EE+  K   K A +KG  +V  + A+  IR +    
Sbjct: 12  VNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVS 71

Query: 61  NYLRMSARVDAVASRVQTALTTRKVTQSMSGVVKAMDAAMKSMNLEKISGLMDKFEEQFE 120
                 A +++V   ++  L   +V  S+    + M A    + + +I   M +  ++  
Sbjct: 72  KLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMM 131

Query: 121 DLDVQSSYMENTMSQSVTTSVPQNDVDSLMKQVADEAGLELTMALPS 167
              +    +E+T          + + +  + ++  E         PS
Sbjct: 132 KAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRILFEITAGALGKAPS 178

>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens} Length = 218

 Score =  111 bits (279), Expect = 5e-31
 Identities = 31/206 (15%), Positives = 72/206 (34%), Gaps = 13/206 (6%)

Query: 1   MENHLFNLKFAAKELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARIHAENAIRQKNQSI 60
           +      ++   + ++R  +  ++EE+  K   K A +KG  +V  + A+  IR +    
Sbjct: 12  VNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVS 71

Query: 61  NYLRMSARVDAVASRVQTALTTRKVTQSMSGVVKAMDAAMKSMNLEKISGLMDKFEEQFE 120
                 A +++V   ++  L   +V  S+    + M A    + + +I   M +  ++  
Sbjct: 72  KLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMM 131

Query: 121 DLDVQSSYMENTMSQSVTTSVPQNDVDSLMKQVADEAGLELTMALPSGPDSIAASSQVSQ 180
              +    +E+T          + + +  + ++  E         PS         +   
Sbjct: 132 KAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRILFEITAGALGKAPSKVTDALPEPEPPG 191

Query: 181 EQ-------------DELSQRLARLR 193
                          + +  RLA LR
Sbjct: 192 AMAASEDEEEEEEALEAMQSRLATLR 217

>3eab_G CHMP1B; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens} Length = 50

 Score = 64.6 bits (157), Expect = 1e-14
 Identities = 29/50 (58%), Positives = 35/50 (70%)

Query: 145 DVDSLMKQVADEAGLELTMALPSGPDSIAASSQVSQEQDELSQRLARLRQ 194
            VD L++++ADEAGL+L M LP G      +S  S EQDELSQRLARLR 
Sbjct: 1   QVDMLLQEMADEAGLDLNMELPQGQTGSVGTSVASAEQDELSQRLARLRD 50

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 1e-05
 Identities = 39/282 (13%), Positives = 75/282 (26%), Gaps = 105/282 (37%)

Query: 1   MENHLFNLKFAAKELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARIHAENAIRQKNQSI 60
           M+  +F L                E   E L+        N      H+ N   + +   
Sbjct: 180 MDFKIFWLNLK--------NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ 231

Query: 61  NYLRM------------------SARV-DAVASRVQTALTTR--KVTQSMSGVVK----- 94
             LR                   +A+  +A     +  LTTR  +VT  +S         
Sbjct: 232 AELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISL 291

Query: 95  ---------------------------------------AMDAAM-----------KSMN 104
                                                  ++ A             K +N
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVN 351

Query: 105 LEKISGLMDKFEEQFEDLDVQSSYM------------ENTMS---QSVTTSVPQNDVDSL 149
            +K++ +++      E  + +  +                +S     V  S     V+ L
Sbjct: 352 CDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKL 411

Query: 150 MKQ-VADEAGLELTMALPSGPDSIAASSQVSQEQD-ELSQRL 189
            K  + ++   E T+++P    SI    +V  E +  L + +
Sbjct: 412 HKYSLVEKQPKESTISIP----SIYLELKVKLENEYALHRSI 449

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	196
3frt_A	218	Charged multivesicular BODY protein 3; ESCRT, ESCR	100.0
2gd5_A	179	Charged multivesicular BODY protein 3; CHMP3, ESCR	100.0
3eab_G	50	CHMP1B; spastin, MIT, ESCRT, alternative splicing,	99.02
4abm_A	79	Charged multivesicular BODY protein 4B; cell cycle	97.91
3um3_B	104	Charged multivesicular BODY protein 4B; alpha-heli	97.7
3frt_A	218	Charged multivesicular BODY protein 3; ESCRT, ESCR	97.7
2gd5_A	179	Charged multivesicular BODY protein 3; CHMP3, ESCR	97.1
3frr_A	191	Uncharacterized protein KIAA0174; ESCRT, ESCRT-III	96.83
3ggy_A	193	Increased sodium tolerance protein 1; ESCRT-III li	96.41
2v6x_B	54	DOA4-independent degradation protein 4; protein tr	96.06
2luh_B	59	Vacuolar protein-sorting-associated protein 60; VT	92.06
2xze_Q	40	Charged multivesicular BODY protein 3; hydrolase-p	91.39
3ggz_E	29	Vacuolar protein-sorting-associated protein 46; no	91.03
3htu_B	39	Vacuolar protein-sorting-associated protein 20; ES	85.74

>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}

Probab=100.00  E-value=6.1e-48  Score=316.78  Aligned_cols=188  Identities=17%  Similarity=0.281  Sum_probs=131.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15948          4 HLFNLKFAAKELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARIHAENAIRQKNQSINYLRMSARVDAVASRVQTALTTR   83 (196)
Q Consensus         4 ~i~~Lr~~~r~l~Re~~kle~ee~k~~~~iKka~kkg~~~~aki~Ak~lvr~rk~~~~l~~~~aqL~~v~~~l~~a~~~~   83 (196)
                      .-..||++.|+|+|++++|++++++++.+||+++++||+++|||||+++||+|+++.+||.++++|++|+++|++++++.
T Consensus        15 ~~r~Lr~~~R~LdR~~~kle~eEkk~~~~IKkaakkg~~~~arilAkelVR~Rk~~~rl~~~kaqL~sV~~rlqt~~s~~   94 (218)
T 3frt_A           15 WSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVL   94 (218)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhHHHHHHhhhccccCCCCchhhHHHHHHHHHHHhcchHhh
Q psy15948         84 KVTQSMSGVVKAMDAAMKSMNLEKISGLMDKFEEQFEDLDVQSSYMENTMSQSVTTSVPQNDVDSLMKQVADEAGLELTM  163 (196)
Q Consensus        84 ~~~~~m~~~~~~m~~~n~~m~l~~i~~~m~~f~k~~~~~~~~~e~m~d~m~~~~~~~~~eeevd~lv~qv~~E~~~~~~~  163 (196)
                      +|+++|++++++|+.+|+.||+|+|+++|++|++||+++||+++||+|+|++.++.+++|+|+|++|++|++|+|.+   
T Consensus        95 ~v~~sM~~st~~M~~~n~~m~l~~i~~tM~efekE~~k~~i~eEmm~Da~d~~~~~~~~eee~d~~v~kVldEi~~~---  171 (218)
T 3frt_A           95 RVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRILFEITAG---  171 (218)
T ss_dssp             ----CCCCCHHHHHHHHHSTTSHHHHHHHHHHHHHHHHHSCC----------------CTTSTTTHHHHHHHTC------
T ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcccccCCchHHHHHHHHHHHHHHhHh---
Confidence            99999999999999999999999999999999999999999999999999999887789999999999999999964   


Q ss_pred             cCCCCCC----Cccccc-----cc-------cchHHHHHHHHHHhhc
Q psy15948        164 ALPSGPD----SIAASS-----QV-------SQEQDELSQRLARLRQ  194 (196)
Q Consensus       164 ~l~~~p~----~~~~~~-----~~-------~~~~~~l~~RL~~Lr~  194 (196)
                      .|+.+|+    ++|++.     +.       +++.++|+.||++||+
T Consensus       172 ~l~~~p~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~m~~rl~al~s  218 (218)
T 3frt_A          172 ALGKAPSKVTDALPEPEPPGAMAASEDEEEEEEALEAMQSRLATLRS  218 (218)
T ss_dssp             -----------------------------------------------
T ss_pred             HhhcCCCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcC
Confidence            4555543    233321     11       1234679999999985

>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A

Probab=100.00  E-value=2.3e-41  Score=271.09  Aligned_cols=166  Identities=16%  Similarity=0.254  Sum_probs=135.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15948          2 ENHLFNLKFAAKELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARIHAENAIRQKNQSINYLRMSARVDAVASRVQTALT   81 (196)
Q Consensus         2 ~~~i~~Lr~~~r~l~Re~~kle~ee~k~~~~iKka~kkg~~~~aki~Ak~lvr~rk~~~~l~~~~aqL~~v~~~l~~a~~   81 (196)
                      .++++.||+++|+|+|++.+|++++++++.+||+++++|+.++||+||+++||+|++..+|+.++++|++|+++++++.+
T Consensus        13 r~~~~~L~~~~r~Ldr~~~kle~~ekk~~~~Ikka~k~g~~~~aki~Ak~lvr~rk~~~~l~~~~a~l~~v~~~lqt~~~   92 (179)
T 2gd5_A           13 NEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLA   92 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhHHHHHHhhhccccCCCCchhhHHHHHHHHHHHhcchH
Q psy15948         82 TRKVTQSMSGVVKAMDAAMKSMNLEKISGLMDKFEEQFEDLDVQSSYMENTMSQSVTTSVPQNDVDSLMKQVADEAGLEL  161 (196)
Q Consensus        82 ~~~~~~~m~~~~~~m~~~n~~m~l~~i~~~m~~f~k~~~~~~~~~e~m~d~m~~~~~~~~~eeevd~lv~qv~~E~~~~~  161 (196)
                      +.+++++|++++++|+.+|+.||+|+|+++|++|+++++++|+++|||+|+|+++++.+++++++|++|++|++|+|+  
T Consensus        93 ~~~v~~am~~~~~~M~~~n~~m~l~~i~~~M~e~~~e~~~~~~~~E~m~d~~~~~~~~~~~eee~d~~v~kVl~E~~~--  170 (179)
T 2gd5_A           93 VLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRILFEITA--  170 (179)
T ss_dssp             HHHHTSSCCCCSHHHHTTTSSTTSSSCCHHHHHHHHHHHHHTSCC-------------------CTTHHHHTTCCC----
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCcHHHHHHHHHHHHHHhhH--
Confidence            999999999999999999999999999999999999999999999999999999988788999999999999999996  


Q ss_pred             hhcCCCCCC
Q psy15948        162 TMALPSGPD  170 (196)
Q Consensus       162 ~~~l~~~p~  170 (196)
                       ++|+.+|+
T Consensus       171 -~~l~~~P~  178 (179)
T 2gd5_A          171 -GALGKAPS  178 (179)
T ss_dssp             ---------
T ss_pred             -hhcccCCC
Confidence             46777774

>3eab_G CHMP1B; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}

Probab=99.02  E-value=2e-11  Score=77.53  Aligned_cols=49  Identities=61%  Similarity=0.892  Sum_probs=31.4

Q ss_pred             hHHHHHHHHHHHhcchHhhcCCCCCC-CccccccccchHHHHHHHHHHhhc
Q psy15948        145 DVDSLMKQVADEAGLELTMALPSGPD-SIAASSQVSQEQDELSQRLARLRQ  194 (196)
Q Consensus       145 evd~lv~qv~~E~~~~~~~~l~~~p~-~~~~~~~~~~~~~~l~~RL~~Lr~  194 (196)
                      +||++|+||+||+|++++.+|+.+|. +++++. ...++|+|.+||++||+
T Consensus         1 qVd~Lm~qVaDE~Glel~~~L~~~~~~~~~~~~-~~~~eD~L~~RLaaLR~   50 (50)
T 3eab_G            1 QVDMLLQEMADEAGLDLNMELPQGQTGSVGTSV-ASAEQDELSQRLARLRD   50 (50)
T ss_dssp             CCCHHHHHHHHHTTCC---------CHHHHHHH-HHHHHHHHHHHHHTTC-
T ss_pred             CHHHHHHHHHHHhCchHHhhcccccccccCCCC-CcccHHHHHHHHHHHhC
Confidence            47899999999999999999998887 333332 34579999999999995

>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}

Probab=97.91  E-value=0.00026  Score=48.74  Aligned_cols=72  Identities=15%  Similarity=0.154  Sum_probs=59.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q psy15948          2 ENHLFNLKFAAKELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARIHAENAIRQK-NQSINYLRMSARVDAVASRVQT   78 (196)
Q Consensus         2 ~~~i~~Lr~~~r~l~Re~~kle~ee~k~~~~iKka~kkg~~~~aki~Ak~lvr~r-k~~~~l~~~~aqL~~v~~~l~~   78 (196)
                      .++|+.||.+...|++...+|++.-..+...+|+++ .+|.    --|..++|.+ -+...+.++.+++..+..++.+
T Consensus         5 ~~AI~~Lr~~~d~L~kkq~~L~~~i~~e~~~Ak~~~-~knK----~~Al~aLkrKK~~E~qL~q~~~ql~~LE~q~~~   77 (79)
T 4abm_A            5 QEAIQRLRDTEEMLSKKQEFLEKKIEQELTAAKKHG-TKNK----RAALQALKRKKRYEKQLAQIDGTLSTIEFQREA   77 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TSCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCH----HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Confidence            479999999999999999999999999999999999 5663    3566666655 5555668888898888877654

>3um3_B Charged multivesicular BODY protein 4B; alpha-helix of C-terminal tail of CHMP4B, ESCRT-III, CHMPS, protein-transport protein complex, BROX; 3.80A {Homo sapiens}

Probab=97.70  E-value=0.00023  Score=51.48  Aligned_cols=67  Identities=19%  Similarity=0.374  Sum_probs=46.3

Q ss_pred             hCCHHHHHHHHHHHHHHHhhhhhHHHHHHhhhccccCCCCchhhHHHHHHHHHHHh----cchHh----hcCCCCCC
Q psy15948        102 SMNLEKISGLMDKFEEQFEDLDVQSSYMENTMSQSVTTSVPQNDVDSLMKQVADEA----GLELT----MALPSGPD  170 (196)
Q Consensus       102 ~m~l~~i~~~m~~f~k~~~~~~~~~e~m~d~m~~~~~~~~~eeevd~lv~qv~~E~----~~~~~----~~l~~~p~  170 (196)
                      .|++++|..+|+++..+++..+-++++|+..+..  ....+|++++.+++.+.+|.    .+++.    -.||.+|+
T Consensus         2 ~m~idkVe~lmDei~E~~e~~~EI~e~Ls~~~~~--~~~~DEdELe~ELe~Le~e~l~~~~l~~~~~~~~~LP~vP~   76 (104)
T 3um3_B            2 NMDIDKVDELMQDIADQQELAEEISTAISKPVGF--GEEFDEDELMAELEELEQEELDKNLLEISGPETVPLPNVPS   76 (104)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC--CCCCCHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCC
Confidence            5899999999999999999876666665554322  23457788888888777764    12221    24777776

>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}

Probab=97.70  E-value=1.7e-05  Score=64.63  Aligned_cols=146  Identities=9%  Similarity=0.166  Sum_probs=75.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHcCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15948          7 NLKFAAKELERNSKRCEKEEKAEKLKT---KKAIQKGNLEVARIHAENAIR-QKNQSINYLRMSARVDAVASRVQTALTT   82 (196)
Q Consensus         7 ~Lr~~~r~l~Re~~kle~ee~k~~~~i---Kka~kkg~~~~aki~Ak~lvr-~rk~~~~l~~~~aqL~~v~~~l~~a~~~   82 (196)
                      .+|...|.|.+..+.|+|+..++...=   +..+|+    +|+--=.+.+| .=++..+.-+...+|-.+.++|++....
T Consensus        11 ~~r~~~r~Lr~~~R~LdR~~~kle~eEkk~~~~IKk----aakkg~~~~arilAkelVR~Rk~~~rl~~~kaqL~sV~~r   86 (218)
T 3frt_A           11 LVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKD----AAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMG   86 (218)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            467777788888888888777665443   333332    22222223333 3344555666677777888888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCHHHHHHHH--HHHHHHHhhh---hhHHHHHHhhhccccCCCCchhhHHHHHHHHHHHh
Q psy15948         83 RKVTQSMSGVVKAMDAAMKSMNLEKISGLM--DKFEEQFEDL---DVQSSYMENTMSQSVTTSVPQNDVDSLMKQVADEA  157 (196)
Q Consensus        83 ~~~~~~m~~~~~~m~~~n~~m~l~~i~~~m--~~f~k~~~~~---~~~~e~m~d~m~~~~~~~~~eeevd~lv~qv~~E~  157 (196)
                      .+.+.++.+++..|+.+...|.-  +.+.|  .++.+-|..+   -+.-+++.+.|++++++..+.++.++.++.+.+.+
T Consensus        87 lqt~~s~~~v~~sM~~st~~M~~--~n~~m~l~~i~~tM~efekE~~k~~i~eEmm~Da~d~~~~~~~~eee~d~~v~kV  164 (218)
T 3frt_A           87 MKNQLAVLRVAGSLQKSTEVMKA--MQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRI  164 (218)
T ss_dssp             HHHHHHCC----CCCCCHHHHHH--HHHSTTSHHHHHHHHHHHHHHHHHSCC----------------CTTSTTTHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcccccCCchHHHHHHHHHH
Confidence            88888888888888776666544  33333  4444444443   33334455677776665444455566666666655


Q ss_pred             c
Q psy15948        158 G  158 (196)
Q Consensus       158 ~  158 (196)
                      .
T Consensus       165 l  165 (218)
T 3frt_A          165 L  165 (218)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A

Probab=97.10  E-value=0.00017  Score=56.80  Aligned_cols=149  Identities=9%  Similarity=0.138  Sum_probs=82.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15948          7 NLKFAAKELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARIHAENAIR-QKNQSINYLRMSARVDAVASRVQTALTTRKV   85 (196)
Q Consensus         7 ~Lr~~~r~l~Re~~kle~ee~k~~~~iKka~kkg~~~~aki~Ak~lvr-~rk~~~~l~~~~aqL~~v~~~l~~a~~~~~~   85 (196)
                      .||...+.|.+.++.|+++..++...-|+.-..= ..+++---.+.+| .=++..+.-+...+|....++|++.....+.
T Consensus        11 ~lr~~~~~L~~~~r~Ldr~~~kle~~ekk~~~~I-kka~k~g~~~~aki~Ak~lvr~rk~~~~l~~~~a~l~~v~~~lqt   89 (179)
T 2gd5_A           11 LVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSV-KDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKN   89 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4788999999999999999988886665441110 1222222223333 2344555566677888999999999999888


Q ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHH--HHHHHHHhhh---hhHHHHHHhhhccccCCCCchhhHHHHHHHHHHHhc
Q psy15948         86 TQSMSGVVKAMDAAMKSMNLEKISGLM--DKFEEQFEDL---DVQSSYMENTMSQSVTTSVPQNDVDSLMKQVADEAG  158 (196)
Q Consensus        86 ~~~m~~~~~~m~~~n~~m~l~~i~~~m--~~f~k~~~~~---~~~~e~m~d~m~~~~~~~~~eeevd~lv~qv~~E~~  158 (196)
                      +.++..++.+|+.+.+.|..  +.+.|  .++.+-|..+   -..-++++++|+++++...++++.++.++.+++.+.
T Consensus        90 ~~~~~~v~~am~~~~~~M~~--~n~~m~l~~i~~~M~e~~~e~~~~~~~~E~m~d~~~~~~~~~~~eee~d~~v~kVl  165 (179)
T 2gd5_A           90 QLAVLRVAGSLQKSTEVMKA--MQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRIL  165 (179)
T ss_dssp             HHHHHHHTSSCCCCSHHHHT--TTSSTTSSSCCHHHHHHHHHHHHHTSCC-------------------CTTHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHH--HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCcHHHHHHHHHHHH
Confidence            88888888888766555432  33333  3444444443   333344478888888765555666677777766553

>3frr_A Uncharacterized protein KIAA0174; ESCRT, ESCRT-III, CHMP, IST1, alternative splicing, phosphoprotein, protein binding; 1.80A {Homo sapiens} PDB: 3frs_A

Probab=96.83  E-value=0.069  Score=42.42  Aligned_cols=151  Identities=15%  Similarity=0.203  Sum_probs=108.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15948          6 FNLKFAAKELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARIHAENAIRQKNQSINYLRMSARVDAVASRVQTALTTRKV   85 (196)
Q Consensus         6 ~~Lr~~~r~l~Re~~kle~ee~k~~~~iKka~kkg~~~~aki~Ak~lvr~rk~~~~l~~~~aqL~~v~~~l~~a~~~~~~   85 (196)
                      -.||..+-.|.=-.+|-....+..+.+|-..++.|+.+.|++-+.++||-.+...=|.-+---.+-+..++.....+...
T Consensus        15 ~~Lklai~Rl~ll~~Kk~~~~k~~RrdIA~LL~~gk~~~AriRvE~iI~ed~~ie~~EilElyCelL~~R~~li~~~k~c   94 (191)
T 3frr_A           15 VNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHIIREDYLVEAMEILELYCDLLLARFGLIQSMKEL   94 (191)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHSCSSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence            46778888888788888888899999999999999999999999999999999988877776777777776655554444


Q ss_pred             HHHHHHHHHHH-HHHHHh-CCHHHHHHHHHHHHHHHhhhhhHHHHHHhhhccccC------------CCCchhhHHHHHH
Q psy15948         86 TQSMSGVVKAM-DAAMKS-MNLEKISGLMDKFEEQFEDLDVQSSYMENTMSQSVT------------TSVPQNDVDSLMK  151 (196)
Q Consensus        86 ~~~m~~~~~~m-~~~n~~-m~l~~i~~~m~~f~k~~~~~~~~~e~m~d~m~~~~~------------~~~~eeevd~lv~  151 (196)
                      -..+..+...+ -..... -++|++..+-.-|..-+-+     ++...++++..+            ..-+++-++..+.
T Consensus        95 p~~l~EAvsslIyAa~R~~~elpEL~~ir~~l~~KyGk-----eF~~~a~e~~~~~Vn~~iv~kLs~~~P~~~lv~~yL~  169 (191)
T 3frr_A           95 DSGLAESVSTLIWAAPRLQSEVAELKIVADQLCAKYSK-----EYGKLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLI  169 (191)
T ss_dssp             CGGGHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCH-----HHHHHHHTTTTSCSCHHHHHHTCCSCCCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhhhcccccChHHHHHHHHHHHHhCH-----HHHHHHHHcCCCCcCHHHHHHcCCCCcCHHHHHHHHH
Confidence            44455544444 445554 7999997777666655443     344334433211            1234577788888


Q ss_pred             HHHHHhcchH
Q psy15948        152 QVADEAGLEL  161 (196)
Q Consensus       152 qv~~E~~~~~  161 (196)
                      .|+.++|+++
T Consensus       170 EIA~~y~V~w  179 (191)
T 3frr_A          170 EIAKNYNVPY  179 (191)
T ss_dssp             HHHHHHTCCC
T ss_pred             HHHHHcCCCC
Confidence            8888888864

>3ggy_A Increased sodium tolerance protein 1; ESCRT-III like, phosphoprotein, protein transport, endocytosis; 1.70A {Saccharomyces cerevisiae} PDB: 3ggz_A

Probab=96.41  E-value=0.21  Score=39.70  Aligned_cols=154  Identities=14%  Similarity=0.165  Sum_probs=105.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q psy15948          5 LFNLKFAAKELERNSKRCEKEEKAEKLKTKKAIQKGNLEVARIHAENAIRQKNQSINYLRMSARVDAVASRVQTALT---   81 (196)
Q Consensus         5 i~~Lr~~~r~l~Re~~kle~ee~k~~~~iKka~kkg~~~~aki~Ak~lvr~rk~~~~l~~~~aqL~~v~~~l~~a~~---   81 (196)
                      ...||..+-.|.=-.+|-+...+..+.+|-+.++.|+.+.||+-+.++||-.+...-|.-+---.+-+..++.....   
T Consensus        13 K~~Lklai~Rl~llq~Kk~~~~k~~RrdIA~LL~~gk~~~AriRvE~iI~ed~~ie~~EilElyCelL~aR~~ll~~~~~   92 (193)
T 3ggy_A           13 KTCLKMCIQRLRYAQEKQQAIAKQSRRQVAQLLLTNKEQKAHYRVETLIHDDIHIELLEILELYCELLLARVQVINDIST   92 (193)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTCCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            35678888888888888888889999999999999999999999999999999988887766666666666554444   


Q ss_pred             -----HHHHHHHHHHHHHHH-HHHHHhCCHHHHHHHHHHHHHHHhh----------hhhHHHHHHhhhccccCCCCchhh
Q psy15948         82 -----TRKVTQSMSGVVKAM-DAAMKSMNLEKISGLMDKFEEQFED----------LDVQSSYMENTMSQSVTTSVPQND  145 (196)
Q Consensus        82 -----~~~~~~~m~~~~~~m-~~~n~~m~l~~i~~~m~~f~k~~~~----------~~~~~e~m~d~m~~~~~~~~~eee  145 (196)
                           ....-..+..+...+ -......++|++..+-.-|..-+-+          -||...++.- ++.   ..-+++-
T Consensus        93 e~~~~~k~cp~~l~EAvsslIyAa~R~~elpEL~~ir~~l~~KyGkeF~~~a~en~~gVn~kiv~k-Ls~---~~P~~el  168 (193)
T 3ggy_A           93 EEQLVKEHMDDGINEAIRSLIYAILFVDEVKELSQLKDLMAWKINVEFVNGVIADHIDVPEKIIKK-CSP---SVPKEEL  168 (193)
T ss_dssp             HHHHHHHSSSSSHHHHHHHHHHHGGGCTTCTTHHHHHHHHHHHTCHHHHHHHHHHCTTCCHHHHHH-HSC---CCCCHHH
T ss_pred             cccccccCCCHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhCHHHHHHHHhcCCCCCHHHHHH-cCC---CCcCHHH
Confidence                 222333355544444 4444447888887666555544332          1222222111 111   1135677


Q ss_pred             HHHHHHHHHHHhcchHh
Q psy15948        146 VDSLMKQVADEAGLELT  162 (196)
Q Consensus       146 vd~lv~qv~~E~~~~~~  162 (196)
                      ++..+..|+.++|++++
T Consensus       169 v~~yL~EIA~ey~V~w~  185 (193)
T 3ggy_A          169 VDLYLKEIAKTYDVPYS  185 (193)
T ss_dssp             HHHHHHHHHHHTTCCHH
T ss_pred             HHHHHHHHHHHcCCCCC
Confidence            88999999999998765

>2v6x_B DOA4-independent degradation protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}

Probab=96.06  E-value=0.0027  Score=40.45  Aligned_cols=15  Identities=33%  Similarity=0.623  Sum_probs=13.6

Q ss_pred             hHHHHHHHHHHhhcC
Q psy15948        181 EQDELSQRLARLRQA  195 (196)
Q Consensus       181 ~~~~l~~RL~~Lr~~  195 (196)
                      .+||||+||++||+.
T Consensus        39 ~ddDLQARLdsLRR~   53 (54)
T 2v6x_B           39 PDDDLQARLNTLKKQ   53 (54)
T ss_dssp             CCHHHHHHHHHHHCC
T ss_pred             chHHHHHHHHHhccC
Confidence            689999999999974

>2luh_B Vacuolar protein-sorting-associated protein 60; VTA1, VPS60, ESCRT, MVB, novel MIT recognition mode, protein transport, endocytosis; NMR {Saccharomyces cerevisiae}

Probab=92.06  E-value=0.1  Score=33.48  Aligned_cols=54  Identities=15%  Similarity=0.300  Sum_probs=41.3

Q ss_pred             CCHHHHHHHHHHHHHHHhhhhhHHHHHHhhhccccCCCCchhhHHHHHHHHHHH
Q psy15948        103 MNLEKISGLMDKFEEQFEDLDVQSSYMENTMSQSVTTSVPQNDVDSLMKQVADE  156 (196)
Q Consensus       103 m~l~~i~~~m~~f~k~~~~~~~~~e~m~d~m~~~~~~~~~eeevd~lv~qv~~E  156 (196)
                      +|+.+|....+++...++..+-+++.++-+...+...+.+|++.+.+++.+-+|
T Consensus         1 inIDkIedlqDem~Dl~e~~nEIQE~L~rsy~~pe~DdiDE~eL~aELdaL~de   54 (59)
T 2luh_B            1 INIDKLQDMQDEMLDLIEQGDELQEVLAMNNNSGELDDISDAELDAELDALAQE   54 (59)
T ss_dssp             CHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHTTCCGGGTTHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccCCHHHHHHHHHHhhcc
Confidence            577888888888888888877777777766666543456888999999888776

>2xze_Q Charged multivesicular BODY protein 3; hydrolase-protein transport complex; 1.75A {Homo sapiens}

Probab=91.39  E-value=0.09  Score=31.18  Aligned_cols=12  Identities=42%  Similarity=0.714  Sum_probs=10.5

Q ss_pred             HHHHHHHHHhhc
Q psy15948        183 DELSQRLARLRQ  194 (196)
Q Consensus       183 ~~l~~RL~~Lr~  194 (196)
                      .+|+.||++||+
T Consensus        29 ~~MqsRLaALRS   40 (40)
T 2xze_Q           29 EAMQSRLATLRS   40 (40)
T ss_dssp             HHHHHHHHHHTC
T ss_pred             HHHHHHHHHhcC
Confidence            559999999996

>3ggz_E Vacuolar protein-sorting-associated protein 46; novel MIM binding mode, phosphoprotein, coiled coil, endosome, membrane; 3.80A {Saccharomyces cerevisiae}

Probab=91.03  E-value=0.19  Score=27.51  Aligned_cols=18  Identities=39%  Similarity=0.549  Sum_probs=15.0

Q ss_pred             cccchHHHHHHHHHHhhc
Q psy15948        177 QVSQEQDELSQRLARLRQ  194 (196)
Q Consensus       177 ~~~~~~~~l~~RL~~Lr~  194 (196)
                      ..++.+|.|-.||.+||.
T Consensus        12 ~~eekEDkLAqRLRALR~   29 (29)
T 3ggz_E           12 VDDEKEDKLAQRLRALRG   29 (29)
T ss_pred             ccchhhHHHHHHHHHHcC
Confidence            345789999999999994

>3htu_B Vacuolar protein-sorting-associated protein 20; ESCRT-II, ESCRT-III, VPS20, VPS25, MVB, cytoplasm, nucleus, polymorphism, protein transport; 2.00A {Homo sapiens}

Probab=85.74  E-value=1  Score=26.41  Aligned_cols=29  Identities=21%  Similarity=0.375  Sum_probs=25.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15948          2 ENHLFNLKFAAKELERNSKRCEKEEKAEK   30 (196)
Q Consensus         2 ~~~i~~Lr~~~r~l~Re~~kle~ee~k~~   30 (196)
                      |++|++|+.+.+.|.+..++++..-.++.
T Consensus         8 DrAIL~LK~QRDkL~qyqkri~~~~~rE~   36 (39)
T 3htu_B            8 DKAILQLKQQRDKLRQYQKRIAQQLERER   36 (39)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence            78999999999999999999988776654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00