Psyllid ID: psy16018

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------9
Protein Sequence
MPLFTRKPKKDDHLLDNNNVGEHKSKIYNGTKSPAPVTEDSKPKLIFHCQLAHGSPTGLISGFSNVRELYQKIAECYEFPAEEVSEDFR
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccEEEcccccHHHHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccccEEEEEEEcccccccEEcccccHHHHHHHHHHHHcccHHHccHccc
Coil and Loop (DISEMBL)
mplftrkpkkddhlldnnnvgehkskiyngtkspapvtedskpklifhcqlahgsptglisGFSNVRELYQKIAECyefpaeevsedfr
Flexible Loop (DISEMBL)
mplftrkpkkddhlldnnnvgehkskiyngtkspaPVTEDSKPKLIFHCQLAHGSPTGLISGFSNVRELYQKIAECyefpaeevsedfr
Low Complexity Region (SEG)
MPLFTRKPKKDDHLLDNNNVGEHKSKIYNGTKSPAPVTEDSKPKLIFHCQLAHGSPTGLISGFSNVRELYQKIAECYEFPAEEVSEDFR
Disordered region (IsUnstruct)
*******************************************KLIFHCQLAHGSPTGLISGFSNVRELYQKIAECYEFP*********
Disordered Region (DISOPRED)
*********************************************IFHCQLAHGSPTGLISGFSNVRELYQKIAECYEFPAEEV*****
Disordered Region (DISEMBL)
MPLFTRKPKKDDHLLDNNNVGEHKSKIYNGTKSPAPVTEDSKPKLIFHCQLAHGSPTGLISGFSNVRELYQKIAECYEFPA********
Disordered Region (DISPRO)
****************************************SKPKLIFHCQLAHGSPTGLISGFSNVRELYQKIAECYEFPAEEV*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MPLFTRKPKKDDHLLDNNNVGEHKSKIYNGTKSPAPVTEDSKPKLIFHCQLAHGSPTGLISGFSNVRELYQKIAECYEFPAEEVSEDFR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	89	2.2.26 [Sep-21-2011]
Q9Z254	333	PDZ domain-containing pro	yes	N/A	0.943	0.252	0.412	2e-12
Q9Z0G0	333	PDZ domain-containing pro	yes	N/A	0.943	0.252	0.381	3e-10
Q8R5M0	297	PDZ domain-containing pro	no	N/A	0.573	0.171	0.527	1e-09
O14908	333	PDZ domain-containing pro	yes	N/A	0.438	0.117	0.666	2e-09
Q1JQD4	313	PDZ domain-containing pro	no	N/A	0.887	0.252	0.418	9e-09
Q8TF64	312	PDZ domain-containing pro	no	N/A	0.449	0.128	0.625	4e-08
Q8TF65	315	PDZ domain-containing pro	no	N/A	0.460	0.130	0.512	8e-07
Q9Z2H7	314	PDZ domain-containing pro	no	N/A	0.662	0.187	0.437	1e-06
Q498D9	314	PDZ domain-containing pro	no	N/A	0.887	0.251	0.372	4e-06

>sp|Q9Z254|GIPC1_RAT PDZ domain-containing protein GIPC1 OS=Rattus norvegicus GN=Gipc1 PE=1 SV=2

 Score = 71.2 bits (173), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/97 (41%), Positives = 51/97 (52%), Gaps = 13/97 (13%)

Query: 1  MPLFTRKPKKDDHLLDNNNVGEHKSKIYNGTKSP-------------APVTEDSKPKLIF 47
          MPL   + KK   L++N      +S +  G   P              P     +P+L+F
Sbjct: 1  MPLGLGRRKKAPPLVENEEAEPSRSGLGVGEPGPLGGSGAGESQMGLPPPPASLRPRLVF 60

Query: 48 HCQLAHGSPTGLISGFSNVRELYQKIAECYEFPAEEV 84
          H QLAHGSPTG I GF+NV+ELY KIAE +  PA EV
Sbjct: 61 HTQLAHGSPTGRIEGFTNVKELYGKIAEAFRLPAAEV 97

May be involved in G protein-linked signaling.
Rattus norvegicus (taxid: 10116)

>sp|Q9Z0G0|GIPC1_MOUSE PDZ domain-containing protein GIPC1 OS=Mus musculus GN=Gipc1 PE=1 SV=1

 Score = 63.9 bits (154), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 37/97 (38%), Positives = 50/97 (51%), Gaps = 13/97 (13%)

Query: 1  MPLFTRKPKKDDHLLDNNNVGEHKSKIYNGTKSPAPVTEDSKPKL-------------IF 47
          MPL   + KK   L++N      +S +  G   P   +   + ++             +F
Sbjct: 1  MPLGLGRRKKAPPLVENEEAEPSRSGLGVGEPGPLGGSAAGESQMGLPPPPAALRPRLVF 60

Query: 48 HCQLAHGSPTGLISGFSNVRELYQKIAECYEFPAEEV 84
          H QLAHGSPTG I GF+NV+ELY KIAE +  PA EV
Sbjct: 61 HTQLAHGSPTGRIEGFTNVKELYGKIAEAFRLPAAEV 97

Inhibits endothelial cell migartion (in vitro). May be involved in G protein-linked signaling.

Mus musculus (taxid: 10090)

>sp|Q8R5M0|GIPC3_MOUSE PDZ domain-containing protein GIPC3 OS=Mus musculus GN=Gipc3 PE=1 SV=1

 Score = 62.0 bits (149), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 4/55 (7%)

Query: 30 GTKSPAPVTEDSKPKLIFHCQLAHGSPTGLISGFSNVRELYQKIAECYEFPAEEV 84
           T+ PA     ++P+L+F  QLAHGSPTG I GF+NVRELY KIAE +     E+
Sbjct: 11 ATEPPA----RARPRLVFRTQLAHGSPTGRIEGFTNVRELYAKIAEAFGIAPTEI 61

Required for postnatal maturation of the hair bundle and long-term survival of hair cells and spiral ganglion.

Mus musculus (taxid: 10090)

>sp|O14908|GIPC1_HUMAN PDZ domain-containing protein GIPC1 OS=Homo sapiens GN=GIPC1 PE=1 SV=2

 Score = 60.8 bits (146), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/39 (66%), Positives = 30/39 (76%)

Query: 46 IFHCQLAHGSPTGLISGFSNVRELYQKIAECYEFPAEEV 84
          +FH QLAHGSPTG I GF+NV+ELY KIAE +  P  EV
Sbjct: 59 VFHTQLAHGSPTGRIEGFTNVKELYGKIAEAFRLPTAEV 97

May be involved in G protein-linked signaling.

Homo sapiens (taxid: 9606)

>sp|Q1JQD4|GIPC2_BOVIN PDZ domain-containing protein GIPC2 OS=Bos taurus GN=GIPC2 PE=2 SV=1

 Score = 58.9 bits (141), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 36/86 (41%), Positives = 47/86 (54%), Gaps = 7/86 (8%)

Query: 1  MPLFTRKPKKDDHLLDNNNV-GEHKSKIYNGTKSP-APVTEDSKPKLIFHCQLAHGSPTG 58
          MPL  R+ KK +    +  V GEH         SP AP       +L+FH QLAHGS TG
Sbjct: 1  MPLGLRRKKKFNTKETSRLVEGEHTDAAVRSLPSPPAPAR-----RLVFHTQLAHGSATG 55

Query: 59 LISGFSNVRELYQKIAECYEFPAEEV 84
           +  FS+++ELY KIA  +E P  E+
Sbjct: 56 RVENFSSIQELYAKIAGVFEIPPSEI 81

Bos taurus (taxid: 9913)

>sp|Q8TF64|GIPC3_HUMAN PDZ domain-containing protein GIPC3 OS=Homo sapiens GN=GIPC3 PE=1 SV=1

 Score = 57.0 bits (136), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 25/40 (62%), Positives = 29/40 (72%)

Query: 45 LIFHCQLAHGSPTGLISGFSNVRELYQKIAECYEFPAEEV 84
          L+F  QLAHGSPTG I GF+NVRELY KIAE +     E+
Sbjct: 37 LVFRTQLAHGSPTGKIEGFTNVRELYAKIAEAFGIAPTEI 76

Required for postnatal maturation of the hair bundle and long-term survival of hair cells and spiral ganglion.

Homo sapiens (taxid: 9606)

>sp|Q8TF65|GIPC2_HUMAN PDZ domain-containing protein GIPC2 OS=Homo sapiens GN=GIPC2 PE=1 SV=1

 Score = 52.4 bits (124), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 21/41 (51%), Positives = 30/41 (73%)

Query: 44 KLIFHCQLAHGSPTGLISGFSNVRELYQKIAECYEFPAEEV 84
          +L+FH QLAHGS TG + GFS+++ELY +IA  +E    E+
Sbjct: 41 RLVFHAQLAHGSATGRVEGFSSIQELYAQIAGAFEISPSEI 81

Homo sapiens (taxid: 9606)

>sp|Q9Z2H7|GIPC2_MOUSE PDZ domain-containing protein GIPC2 OS=Mus musculus GN=Gipc2 PE=1 SV=1

 Score = 51.6 bits (122), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/64 (43%), Positives = 34/64 (53%), Gaps = 5/64 (7%)

Query: 21 GEHKSKIYNGTKSPAPVTEDSKPKLIFHCQLAHGSPTGLISGFSNVRELYQKIAECYEFP 80
          GE  S        PAP       KL+FH QLAHGS TG +  FS++ ELY KIA  +E  
Sbjct: 23 GERSSGSQGVPGPPAPAR-----KLVFHAQLAHGSATGRVEDFSSISELYAKIAGVFEIA 77

Query: 81 AEEV 84
            E+
Sbjct: 78 PSEI 81

Mus musculus (taxid: 10090)

>sp|Q498D9|GIPC2_RAT PDZ domain-containing protein GIPC2 OS=Rattus norvegicus GN=Gipc2 PE=2 SV=1

 Score = 50.1 bits (118), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 32/86 (37%), Positives = 41/86 (47%), Gaps = 7/86 (8%)

Query: 1  MPLFTRKPKKDDHLLDNNNV--GEHKSKIYNGTKSPAPVTEDSKPKLIFHCQLAHGSPTG 58
          MPL  R  KK     +   +  GE           PAP       +L+FH QLAHGS TG
Sbjct: 1  MPLGLRGKKKAAKSKETARLVEGERSGGSQGVPGPPAPAR-----RLVFHAQLAHGSATG 55

Query: 59 LISGFSNVRELYQKIAECYEFPAEEV 84
           +  FS++ ELY KIA  +E    E+
Sbjct: 56 RVEDFSSISELYAKIAGVFEIAPSEI 81

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	89
307186593	834	Succinyl-CoA:3-ketoacid-coenzyme A trans	0.471	0.050	0.857	3e-15
195153797	343	GL17375 [Drosophila persimilis] gi|19845	0.943	0.244	0.469	4e-15
383864095	349	PREDICTED: PDZ domain-containing protein	0.494	0.126	0.795	5e-15
158285226	342	AGAP007674-PB [Anopheles gambiae str. PE	0.910	0.236	0.461	5e-15
307196399	378	PDZ domain-containing protein GIPC1 [Har	0.483	0.113	0.837	6e-15
91091102	315	PREDICTED: similar to RGS-GAIP interacti	0.707	0.2	0.6	2e-14
350402191	344	PREDICTED: PDZ domain-containing protein	0.483	0.125	0.790	3e-14
340726871	344	PREDICTED: LOW QUALITY PROTEIN: PDZ doma	0.483	0.125	0.790	4e-14
380020563	345	PREDICTED: LOW QUALITY PROTEIN: PDZ doma	0.494	0.127	0.795	4e-14
405953045	348	PDZ domain-containing protein GIPC1 [Cra	0.921	0.235	0.41	6e-14

>gi|307186593|gb|EFN72110.1| Succinyl-CoA:3-ketoacid-coenzyme A transferase 1, mitochondrial [Camponotus floridanus]

 Score = 85.9 bits (211), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 36/42 (85%), Positives = 39/42 (92%)

Query: 43  PKLIFHCQLAHGSPTGLISGFSNVRELYQKIAECYEFPAEEV 84
           P L+FHCQLAHGSPTGLIS FSNVRELYQKIAECY+ PAEE+
Sbjct: 71  PSLVFHCQLAHGSPTGLISDFSNVRELYQKIAECYDLPAEEI 112

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195153797|ref|XP_002017810.1| GL17375 [Drosophila persimilis] gi|198458102|ref|XP_001360911.2| GA11060 [Drosophila pseudoobscura pseudoobscura] gi|194113606|gb|EDW35649.1| GL17375 [Drosophila persimilis] gi|198136222|gb|EAL25486.2| GA11060 [Drosophila pseudoobscura pseudoobscura]

 Score = 85.5 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 46/98 (46%), Positives = 56/98 (57%), Gaps = 14/98 (14%)

Query: 1  MPLFTRKPKKDDHLLDNNNVGEHKSKIYNGTKSPAPVT--------------EDSKPKLI 46
          MPLFTRK  K     DN +   + S    G  S  P T              + SKP L+
Sbjct: 1  MPLFTRKTTKPGSAADNASQNSNNSDGGKGRASGGPATIQNNNNNNNNNSSPDYSKPPLV 60

Query: 47 FHCQLAHGSPTGLISGFSNVRELYQKIAECYEFPAEEV 84
          FHCQLAHGSPTGLI  FS+VRELYQKIAEC++   +++
Sbjct: 61 FHCQLAHGSPTGLIHDFSSVRELYQKIAECFDISEKDI 98

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383864095|ref|XP_003707515.1| PREDICTED: PDZ domain-containing protein GIPC1-like [Megachile rotundata]

 Score = 85.1 bits (209), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 35/44 (79%), Positives = 40/44 (90%)

Query: 41  SKPKLIFHCQLAHGSPTGLISGFSNVRELYQKIAECYEFPAEEV 84
           S+ +L+FHCQLAHGSPTGLISGFSNVRELYQKIAECY+   EE+
Sbjct: 68  SRTRLVFHCQLAHGSPTGLISGFSNVRELYQKIAECYDLSMEEI 111

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158285226|ref|XP_308197.4| AGAP007674-PB [Anopheles gambiae str. PEST] gi|158285228|ref|XP_001687864.1| AGAP007674-PA [Anopheles gambiae str. PEST] gi|157019890|gb|EAA04121.4| AGAP007674-PB [Anopheles gambiae str. PEST] gi|157019891|gb|EDO64513.1| AGAP007674-PA [Anopheles gambiae str. PEST]

 Score = 85.1 bits (209), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 48/104 (46%), Positives = 61/104 (58%), Gaps = 23/104 (22%)

Query: 1   MPLFTRKPKK----------DDHLL-DNNNVGE---------HKSKIYNGTKSPAPVTED 40
           MPLF +K  K          D H   DNNN            H   + NG    + VT  
Sbjct: 1   MPLFNKKSTKISNPSPPMTKDPHAYHDNNNYKNPPIPTAPTIHHDSMSNGGHGESTVT-- 58

Query: 41  SKPKLIFHCQLAHGSPTGLISGFSNVRELYQKIAECYEFPAEEV 84
            KP+L+F+CQLAHGSPTG I+GF++V+ELYQKIAECY+FP +E+
Sbjct: 59  -KPQLVFNCQLAHGSPTGFITGFASVKELYQKIAECYDFPMDEI 101

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307196399|gb|EFN77988.1| PDZ domain-containing protein GIPC1 [Harpegnathos saltator]

 Score = 84.7 bits (208), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 36/43 (83%), Positives = 39/43 (90%)

Query: 42  KPKLIFHCQLAHGSPTGLISGFSNVRELYQKIAECYEFPAEEV 84
           KP L+FHCQLAHGSP GLIS FSNVRELYQKIAECY+ PAEE+
Sbjct: 98  KPSLVFHCQLAHGSPMGLISDFSNVRELYQKIAECYDLPAEEI 140

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91091102|ref|XP_968698.1| PREDICTED: similar to RGS-GAIP interacting protein GIPC [Tribolium castaneum] gi|270013145|gb|EFA09593.1| hypothetical protein TcasGA2_TC011711 [Tribolium castaneum]

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 42/70 (60%), Positives = 52/70 (74%), Gaps = 7/70 (10%)

Query: 15 LDNNNVGEHKSKIYNGTKSPAPVTEDSKPKLIFHCQLAHGSPTGLISGFSNVRELYQKIA 74
          ++NNNV   KSK+      P+PV+  SK  L FHCQLAHGSPT  +SGFSNV+ELYQKIA
Sbjct: 17 VENNNV--VKSKV-----PPSPVSPISKASLQFHCQLAHGSPTVFVSGFSNVKELYQKIA 69

Query: 75 ECYEFPAEEV 84
          EC++FP  E+
Sbjct: 70 ECFDFPPSEI 79

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350402191|ref|XP_003486399.1| PREDICTED: PDZ domain-containing protein GIPC1-like [Bombus impatiens]

 Score = 82.4 bits (202), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 34/43 (79%), Positives = 40/43 (93%)

Query: 42  KPKLIFHCQLAHGSPTGLISGFSNVRELYQKIAECYEFPAEEV 84
           KP L+F+CQLAHGSPTGLISGF+NVRELYQKIA+CY+ P EE+
Sbjct: 64  KPPLVFYCQLAHGSPTGLISGFNNVRELYQKIADCYDIPMEEI 106

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340726871|ref|XP_003401775.1| PREDICTED: LOW QUALITY PROTEIN: PDZ domain-containing protein GIPC1-like [Bombus terrestris]

 Score = 82.4 bits (202), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 34/43 (79%), Positives = 40/43 (93%)

Query: 42  KPKLIFHCQLAHGSPTGLISGFSNVRELYQKIAECYEFPAEEV 84
           KP L+F+CQLAHGSPTGLISGF+NVRELYQKIA+CY+ P EE+
Sbjct: 64  KPPLVFYCQLAHGSPTGLISGFNNVRELYQKIADCYDIPMEEI 106

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380020563|ref|XP_003694152.1| PREDICTED: LOW QUALITY PROTEIN: PDZ domain-containing protein GIPC1-like [Apis florea]

 Score = 82.0 bits (201), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 35/44 (79%), Positives = 39/44 (88%)

Query: 41  SKPKLIFHCQLAHGSPTGLISGFSNVRELYQKIAECYEFPAEEV 84
           S P  +FHCQLAHGSPTGLISGF+NVRELYQKIAECY+ P EE+
Sbjct: 64  SNPLPVFHCQLAHGSPTGLISGFNNVRELYQKIAECYDIPIEEI 107

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|405953045|gb|EKC20778.1| PDZ domain-containing protein GIPC1 [Crassostrea gigas]

 Score = 81.6 bits (200), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 41/100 (41%), Positives = 58/100 (58%), Gaps = 18/100 (18%)

Query: 3   LFTRKPKKDDHLLD--NNNVGEHKSKIYNGTKSPA----------------PVTEDSKPK 44
           +F +K K  D+L++   N+ G    +   G  +P                 P  +  +PK
Sbjct: 4   IFGKKNKSKDNLVEYSQNSTGNDGPRPAEGNNTPDTNGTTQQQQPAVQKNDPPAQPPRPK 63

Query: 45  LIFHCQLAHGSPTGLISGFSNVRELYQKIAECYEFPAEEV 84
           L+FHCQ AHGSPTG+ISGF+NV+ELYQKIA+CY+ P  E+
Sbjct: 64  LVFHCQQAHGSPTGIISGFTNVKELYQKIADCYDLPVSEI 103

Source: Crassostrea gigas

Species: Crassostrea gigas

Genus: Crassostrea

Family: Ostreidae

Order: Ostreoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	89
FB|FBgn0010504	336	kermit "kermit" [Drosophila me	0.943	0.25	0.456	5.4e-16
ZFIN|ZDB-GENE-040426-921	328	gipc2 "GIPC PDZ domain contain	0.921	0.25	0.456	6.7e-15
ZFIN|ZDB-GENE-060726-1	335	gipc1 "GIPC PDZ domain contain	0.752	0.2	0.542	1e-12
UNIPROTKB|E1BJQ7	333	GIPC1 "Uncharacterized protein	0.584	0.156	0.581	1.3e-11
UNIPROTKB|E2R071	333	GIPC1 "Uncharacterized protein	0.584	0.156	0.581	1.3e-11
RGD|68338	333	Gipc1 "GIPC PDZ domain contain	0.943	0.252	0.412	1.3e-11
MGI|MGI:1926252	333	Gipc1 "GIPC PDZ domain contain	0.483	0.129	0.674	2.2e-11
UNIPROTKB|O14908	333	GIPC1 "PDZ domain-containing p	0.584	0.156	0.563	3.7e-11
ZFIN|ZDB-GENE-060616-326	333	zgc:136839 "zgc:136839" [Danio	0.707	0.189	0.492	4.7e-11
UNIPROTKB|Q1JQD4	313	GIPC2 "PDZ domain-containing p	0.887	0.252	0.418	1.1e-09

FB|FBgn0010504 kermit "kermit" [Drosophila melanogaster (taxid:7227)]

 Score = 202 (76.2 bits), Expect = 5.4e-16, P = 5.4e-16
 Identities = 42/92 (45%), Positives = 58/92 (63%)

Query:     1 MPLFTRKPKKDDHLLDNNNVGEHKSKIYNGTKSPAPVT--------EDSKPKLIFHCQLA 52
             MPLFTRK  K     D  +    +S + +G+   + ++        E +KP L+FHCQLA
Sbjct:     1 MPLFTRKSPKQGPTSDGGSQFGSRSSMNSGSSQGSHISNNNNNSIPEKTKPPLVFHCQLA 60

Query:    53 HGSPTGLISGFSNVRELYQKIAECYEFPAEEV 84
             HGSPTGLI  FS+VRELYQKIAEC++   +++
Sbjct:    61 HGSPTGLIHDFSSVRELYQKIAECFDISEKDI 92

GO:0009966 "regulation of signal transduction" evidence=ISS

GO:0008340 "determination of adult lifespan" evidence=IMP

GO:0031987 "locomotion involved in locomotory behavior" evidence=IMP

ZFIN|ZDB-GENE-040426-921 gipc2 "GIPC PDZ domain containing family, member 2" [Danio rerio (taxid:7955)]

 Score = 192 (72.6 bits), Expect = 6.7e-15, P = 6.7e-15
 Identities = 42/92 (45%), Positives = 56/92 (60%)

Query:     1 MPLFTRKPK----KDDHLLDNNNVGEH----KSKIYNGTKSPAPVTEDSKPKLIFHCQLA 52
             MPL  RK K    +  +L++N  +G H    KS +  G   P P +   +PKL+FH QLA
Sbjct:     1 MPLGLRKKKNKSRESSNLVENEEIGGHAVVGKSAVNGGGLPPPPAS--LRPKLVFHTQLA 58

Query:    53 HGSPTGLISGFSNVRELYQKIAECYEFPAEEV 84
             HGSPTG I GF+NV+ELY KIAE +    +E+
Sbjct:    59 HGSPTGRIEGFTNVKELYNKIAEAFNLSPDEI 90

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-060726-1 gipc1 "GIPC PDZ domain containing family, member 1" [Danio rerio (taxid:7955)]

 Score = 173 (66.0 bits), Expect = 1.0e-12, P = 1.0e-12
 Identities = 38/70 (54%), Positives = 43/70 (61%)

Query:    15 LDNNNVGEHKSKIYNGTKSPAPVTEDSKPKLIFHCQLAHGSPTGLISGFSNVRELYQKIA 74
             LD   VG  +   + G   P P T   +P+LIFH QLAHGSPTG I GFSNVRELY KI 
Sbjct:    35 LDGGRVGLGEGAAHEGL--PPPPTS-LRPRLIFHTQLAHGSPTGRIEGFSNVRELYAKIG 91

Query:    75 ECYEFPAEEV 84
             E +  P  EV
Sbjct:    92 EAFGIPPTEV 101

GO:0005622 "intracellular" evidence=IMP

GO:0004707 "MAP kinase activity" evidence=IMP

GO:0001525 "angiogenesis" evidence=IMP

GO:0048844 "artery morphogenesis" evidence=IMP

GO:0048845 "venous blood vessel morphogenesis" evidence=IMP

UNIPROTKB|E1BJQ7 GIPC1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 163 (62.4 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 32/55 (58%), Positives = 38/55 (69%)

Query:    30 GTKSPAPVTEDSKPKLIFHCQLAHGSPTGLISGFSNVRELYQKIAECYEFPAEEV 84
             G   P P     +P+L+FH QLAHGSPTG I GF+NV+ELY KIAE +  PA EV
Sbjct:    46 GLPPPPPAL---RPRLVFHTQLAHGSPTGRIEGFTNVKELYGKIAEAFRLPAAEV 97

GO:0048167 "regulation of synaptic plasticity" evidence=IEA

GO:0043542 "endothelial cell migration" evidence=IEA

GO:0043198 "dendritic shaft" evidence=IEA

GO:0043197 "dendritic spine" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0032435 "negative regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0031647 "regulation of protein stability" evidence=IEA

GO:0030511 "positive regulation of transforming growth factor beta receptor signaling pathway" evidence=IEA

GO:0017022 "myosin binding" evidence=IEA

GO:0014047 "glutamate secretion" evidence=IEA

GO:0012506 "vesicle membrane" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=IEA

GO:0007268 "synaptic transmission" evidence=IEA

GO:0006605 "protein targeting" evidence=IEA

GO:0005938 "cell cortex" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005102 "receptor binding" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

UNIPROTKB|E2R071 GIPC1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 163 (62.4 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 32/55 (58%), Positives = 38/55 (69%)

Query:    30 GTKSPAPVTEDSKPKLIFHCQLAHGSPTGLISGFSNVRELYQKIAECYEFPAEEV 84
             G   P P     +P+L+FH QLAHGSPTG I GF+NV+ELY KIAE +  PA EV
Sbjct:    46 GLPPPPPAL---RPRLVFHTQLAHGSPTGRIEGFTNVKELYGKIAEAFRLPAAEV 97

GO:0048167 "regulation of synaptic plasticity" evidence=IEA

GO:0043542 "endothelial cell migration" evidence=IEA

GO:0043198 "dendritic shaft" evidence=IEA

GO:0043197 "dendritic spine" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0032435 "negative regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0031647 "regulation of protein stability" evidence=IEA

GO:0030511 "positive regulation of transforming growth factor beta receptor signaling pathway" evidence=IEA

GO:0017022 "myosin binding" evidence=IEA

GO:0014047 "glutamate secretion" evidence=IEA

GO:0012506 "vesicle membrane" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=IEA

GO:0007268 "synaptic transmission" evidence=IEA

GO:0006605 "protein targeting" evidence=IEA

GO:0005938 "cell cortex" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005102 "receptor binding" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

RGD|68338 Gipc1 "GIPC PDZ domain containing family, member 1" [Rattus norvegicus (taxid:10116)]

 Score = 163 (62.4 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 40/97 (41%), Positives = 51/97 (52%)

Query:     1 MPLFTRKPKKDDHLLDNNNVGEHKSKIYNGTKSPA-------------PVTEDSKPKLIF 47
             MPL   + KK   L++N      +S +  G   P              P     +P+L+F
Sbjct:     1 MPLGLGRRKKAPPLVENEEAEPSRSGLGVGEPGPLGGSGAGESQMGLPPPPASLRPRLVF 60

Query:    48 HCQLAHGSPTGLISGFSNVRELYQKIAECYEFPAEEV 84
             H QLAHGSPTG I GF+NV+ELY KIAE +  PA EV
Sbjct:    61 HTQLAHGSPTGRIEGFTNVKELYGKIAEAFRLPAAEV 97

GO:0003779 "actin binding" evidence=IEA;ISO

GO:0005102 "receptor binding" evidence=IEA;ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=ISO

GO:0005829 "cytosol" evidence=ISO

GO:0005903 "brush border" evidence=IDA

GO:0005938 "cell cortex" evidence=IEA;ISO

GO:0006605 "protein targeting" evidence=IEA;ISO

GO:0007268 "synaptic transmission" evidence=IEA;ISO

GO:0008021 "synaptic vesicle" evidence=IEA;ISO

GO:0012506 "vesicle membrane" evidence=IEA;ISO

GO:0014047 "glutamate secretion" evidence=IEA;ISO

GO:0016020 "membrane" evidence=ISO;IDA

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=ISO

GO:0017022 "myosin binding" evidence=IEA;ISO

GO:0030139 "endocytic vesicle" evidence=IDA

GO:0030165 "PDZ domain binding" evidence=IPI

GO:0030511 "positive regulation of transforming growth factor beta receptor signaling pathway" evidence=IEA;ISO

GO:0031647 "regulation of protein stability" evidence=IEA;ISO

GO:0032435 "negative regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA;ISO

GO:0042803 "protein homodimerization activity" evidence=IEA;ISO

GO:0043197 "dendritic spine" evidence=IEA;ISO

GO:0043198 "dendritic shaft" evidence=IEA;ISO

GO:0043542 "endothelial cell migration" evidence=IEA;ISO

GO:0044445 "cytosolic part" evidence=IDA

GO:0048167 "regulation of synaptic plasticity" evidence=IEA;ISO

MGI|MGI:1926252 Gipc1 "GIPC PDZ domain containing family, member 1" [Mus musculus (taxid:10090)]

 Score = 161 (61.7 bits), Expect = 2.2e-11, P = 2.2e-11
 Identities = 29/43 (67%), Positives = 35/43 (81%)

Query:    42 KPKLIFHCQLAHGSPTGLISGFSNVRELYQKIAECYEFPAEEV 84
             +P+L+FH QLAHGSPTG I GF+NV+ELY KIAE +  PA EV
Sbjct:    55 RPRLVFHTQLAHGSPTGRIEGFTNVKELYGKIAEAFRLPAAEV 97

GO:0003779 "actin binding" evidence=IPI

GO:0005096 "GTPase activator activity" evidence=TAS

GO:0005102 "receptor binding" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005903 "brush border" evidence=ISO

GO:0005938 "cell cortex" evidence=ISO

GO:0006605 "protein targeting" evidence=IMP;IPI

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=TAS

GO:0007268 "synaptic transmission" evidence=IMP

GO:0008021 "synaptic vesicle" evidence=IDA

GO:0012506 "vesicle membrane" evidence=IDA

GO:0014047 "glutamate secretion" evidence=IMP

GO:0016020 "membrane" evidence=ISO;IDA

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=ISO

GO:0017022 "myosin binding" evidence=IPI

GO:0030139 "endocytic vesicle" evidence=ISO

GO:0030165 "PDZ domain binding" evidence=ISO

GO:0030511 "positive regulation of transforming growth factor beta receptor signaling pathway" evidence=IDA

GO:0031647 "regulation of protein stability" evidence=IDA

GO:0032435 "negative regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0043197 "dendritic spine" evidence=IDA

GO:0043198 "dendritic shaft" evidence=IDA

GO:0043542 "endothelial cell migration" evidence=IMP

GO:0044445 "cytosolic part" evidence=ISO

GO:0048167 "regulation of synaptic plasticity" evidence=IMP

UNIPROTKB|O14908 GIPC1 "PDZ domain-containing protein GIPC1" [Homo sapiens (taxid:9606)]

 Score = 159 (61.0 bits), Expect = 3.7e-11, P = 3.7e-11
 Identities = 31/55 (56%), Positives = 37/55 (67%)

Query:    30 GTKSPAPVTEDSKPKLIFHCQLAHGSPTGLISGFSNVRELYQKIAECYEFPAEEV 84
             G   P P     +P+L+FH QLAHGSPTG I GF+NV+ELY KIAE +  P  EV
Sbjct:    46 GLPPPPPAL---RPRLVFHTQLAHGSPTGRIEGFTNVKELYGKIAEAFRLPTAEV 97

GO:0005903 "brush border" evidence=IEA

GO:0030139 "endocytic vesicle" evidence=IEA

GO:0030165 "PDZ domain binding" evidence=IEA

GO:0044445 "cytosolic part" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=NAS

GO:0005938 "cell cortex" evidence=IDA

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IDA

GO:0005102 "receptor binding" evidence=IPI

GO:0005829 "cytosol" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0016020 "membrane" evidence=ISS

GO:0030511 "positive regulation of transforming growth factor beta receptor signaling pathway" evidence=ISS

GO:0031647 "regulation of protein stability" evidence=ISS

GO:0032435 "negative regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=ISS

GO:0003779 "actin binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0006605 "protein targeting" evidence=ISS

GO:0007268 "synaptic transmission" evidence=ISS

GO:0012506 "vesicle membrane" evidence=ISS

GO:0014047 "glutamate secretion" evidence=ISS

GO:0017022 "myosin binding" evidence=ISS

GO:0042803 "protein homodimerization activity" evidence=ISS

GO:0043198 "dendritic shaft" evidence=ISS

GO:0043542 "endothelial cell migration" evidence=ISS

GO:0048167 "regulation of synaptic plasticity" evidence=ISS

GO:0008021 "synaptic vesicle" evidence=ISS

GO:0043197 "dendritic spine" evidence=ISS

ZFIN|ZDB-GENE-060616-326 zgc:136839 "zgc:136839" [Danio rerio (taxid:7955)]

 Score = 158 (60.7 bits), Expect = 4.7e-11, P = 4.7e-11
 Identities = 31/63 (49%), Positives = 39/63 (61%)

Query:    22 EHKSKIYNGTKSPAPVTEDSKPKLIFHCQLAHGSPTGLISGFSNVRELYQKIAECYEFPA 81
             E +S + +    P       +PKL+FH QLAHGSPTG I GF+NVRELY KIAE +    
Sbjct:    36 ESQSTVPSAPPLPPDAAPCPRPKLVFHTQLAHGSPTGRIHGFTNVRELYAKIAEVFNISP 95

Query:    82 EEV 84
              E+
Sbjct:    96 SEI 98

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q1JQD4 GIPC2 "PDZ domain-containing protein GIPC2" [Bos taurus (taxid:9913)]

 Score = 145 (56.1 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 36/86 (41%), Positives = 47/86 (54%)

Query:     1 MPLFTRKPKKDDHLLDNNNV-GEHKSKIYNGTKSP-APVTEDSKPKLIFHCQLAHGSPTG 58
             MPL  R+ KK +    +  V GEH         SP AP       +L+FH QLAHGS TG
Sbjct:     1 MPLGLRRKKKFNTKETSRLVEGEHTDAAVRSLPSPPAPAR-----RLVFHTQLAHGSATG 55

Query:    59 LISGFSNVRELYQKIAECYEFPAEEV 84
              +  FS+++ELY KIA  +E P  E+
Sbjct:    56 RVENFSSIQELYAKIAGVFEIPPSEI 81

GO:0005737 "cytoplasm" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O14908	GIPC1_HUMAN	No assigned EC number	0.6666	0.4382	0.1171	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	89
KOG3938|consensus	334		99.95
PF03925	190	SeqA: SeqA protein; InterPro: IPR005621 The bindin	83.37
PRK11187	182	replication initiation regulator SeqA; Provisional	81.47

>KOG3938|consensus

Probab=99.95  E-value=7.2e-29  Score=198.30  Aligned_cols=84  Identities=43%  Similarity=0.723  Sum_probs=64.0

Q ss_pred             CCCccCCCCCCCCCCCCCCcCCCCcc----------cccCCCCCCCCCCCCCCceeeeeecccCCCceeccCccchHHHH
Q psy16018          1 MPLFTRKPKKDDHLLDNNNVGEHKSK----------IYNGTKSPAPVTEDSKPKLIFHCQLAHGSPTGLISGFSNVRELY   70 (89)
Q Consensus         1 m~l~~kk~~k~~~~~~~~~~~~~~~~----------~~~g~~~~~p~~~~~~p~LvFh~QLAHGSptg~I~gF~nvkELY   70 (89)
                      |||+.++-+|.-.......--+-.|.          +.++.+ ..+.+++.+|+||||||||||||||+|+||+||+|||
T Consensus         1 M~~~~~~~~k~~~~~~~~~a~~~rs~e~~p~~~~~~~s~~~~-s~s~~~~~~p~LvF~~QLAHGSptg~Ie~fsnv~ELY   79 (334)
T KOG3938|consen    1 MPLQGRPSPKSRPRSEGRGAFNARSGETSPLQPGVPISPNEG-SPSIPPAVRPRLVFHCQLAHGSPTGRIEGFSNVRELY   79 (334)
T ss_pred             CCCCCCCCCCCCCccccccccccCCCCCCCCCCCCCCCccCC-CCCCCccCCCceeEeeeeccCCccceecccccHHHHH
Confidence            89998888776665433222111111          112233 2355688999999999999999999999999999999


Q ss_pred             HHhhhhhcCChhhHh
Q psy16018         71 QKIAECYEFPAEEVS   85 (89)
Q Consensus        71 ~kIae~f~i~~~eIl   85 (89)
                      ++||+||+|+++|||
T Consensus        80 ~kIAe~F~Is~~dIl   94 (334)
T KOG3938|consen   80 QKIAEAFDISPDDIL   94 (334)
T ss_pred             HHHHHHhcCCccceE
Confidence            999999999999997

>PF03925 SeqA: SeqA protein; InterPro: IPR005621 The binding of SeqA protein to hemimethylated GATC sequences is important in the negative modulation of chromosomal initiation at oriC, and in the formation of SeqA foci necessary for Escherichia coli chromosome segregation []

Probab=83.37  E-value=0.68  Score=35.52  Aligned_cols=23  Identities=26%  Similarity=0.327  Sum_probs=17.4

Q ss_pred             hHHHHHHhh---hhhcCChhhHhhhc
Q psy16018         66 VRELYQKIA---ECYEFPAEEVSEDF   88 (89)
Q Consensus        66 vkELY~kIa---e~f~i~~~eIl~~~   88 (89)
                      ..|||+-||   +.+|=+++||||.+
T Consensus         7 DeELYryIAs~Tq~IGESASdILRRL   32 (190)
T PF03925_consen    7 DEELYRYIASQTQHIGESASDILRRL   32 (190)
T ss_dssp             -HHHHHHHHTT-SSTT--HHHHHHHH
T ss_pred             cHHHHHHHHHhccccCCCHHHHHHHh
Confidence            479999999   66777999999964

SeqA tetramers are able to aggregate or multimerize in a reversible, concentration-dependent manner []. Apart from its function in the control of DNA replication, SeqA may also be a specific transcription factor []. The C-terminal domain binds DNA, binding to fully methylated and hemimethylated GATC sequences at oriC. The structure of the C-terminal domain consists of seven alpha-helices and three-stranded beta-sheet.; GO: 0003677 DNA binding, 0032297 negative regulation of DNA-dependent DNA replication initiation; PDB: 3FMT_A 1J3E_A 1XRX_D 1IU3_C 1LRR_D.

>PRK11187 replication initiation regulator SeqA; Provisional

Probab=81.47  E-value=0.99  Score=34.56  Aligned_cols=23  Identities=26%  Similarity=0.327  Sum_probs=19.8

Q ss_pred             hHHHHHHhh---hhhcCChhhHhhhc
Q psy16018         66 VRELYQKIA---ECYEFPAEEVSEDF   88 (89)
Q Consensus        66 vkELY~kIa---e~f~i~~~eIl~~~   88 (89)
                      ..|||+-||   +..|=+++||||.+
T Consensus         7 DeELYryIAS~Tq~IGESASDILRRL   32 (182)
T PRK11187          7 DEELYRYIASHTQHIGESASDILRRL   32 (182)
T ss_pred             cHHHHHHHHHccCccCCCHHHHHHHH
Confidence            479999999   67777999999974

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	89
1xrx_A	50	SEQA protein; protein filament, LEFT-handed helix,	83.15

>1xrx_A SEQA protein; protein filament, LEFT-handed helix, DNA replication inhibit replication inhibitor; 2.15A {Escherichia coli} SCOP: a.43.1.7

Probab=83.15  E-value=0.58  Score=28.75  Aligned_cols=23  Identities=26%  Similarity=0.286  Sum_probs=19.5

Q ss_pred             hHHHHHHhh---hhhcCChhhHhhhc
Q psy16018         66 VRELYQKIA---ECYEFPAEEVSEDF   88 (89)
Q Consensus        66 vkELY~kIa---e~f~i~~~eIl~~~   88 (89)
                      ..|||+-||   ..++=+++||||.+
T Consensus         7 DdelY~YIas~t~~igEsaSdiLRRl   32 (50)
T 1xrx_A            7 DDELYSYIASHTKHIGESASDILRRM   32 (50)
T ss_dssp             CHHHHHHHHTTCSSTTCCHHHHHHHH
T ss_pred             cHHHHHHHHHhchhhccCHHHHHHHH
Confidence            479999999   67778999999964

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	89
d1xrxa1	35	SeqA {Escherichia coli [TaxId: 562]}	89.83
d1b0na2	68	SinR repressor, DNA-binding domain {Bacillus subti	82.12

>d1xrxa1 a.43.1.7 (A:1-35) SeqA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Ribbon-helix-helix
superfamily: Ribbon-helix-helix
family: SeqA N-terminal domain-like
domain: SeqA
species: Escherichia coli [TaxId: 562]

Probab=89.83  E-value=0.074  Score=29.31  Aligned_cols=23  Identities=26%  Similarity=0.286  Sum_probs=19.6

Q ss_pred             hHHHHHHhh---hhhcCChhhHhhhc
Q psy16018         66 VRELYQKIA---ECYEFPAEEVSEDF   88 (89)
Q Consensus        66 vkELY~kIa---e~f~i~~~eIl~~~   88 (89)
                      ..|||+-||   +.+|=+++||||.+
T Consensus         7 ddeLY~yIas~t~~iGEsaSdILRRl   32 (35)
T d1xrxa1           7 DDELYSYIASHTKHIGESASDILRRM   32 (35)
T ss_dssp             CHHHHHHHHTTCSSTTCCHHHHHHHH
T ss_pred             hHHHHHHHHHhhhHhccCHHHHHHHH
Confidence            469999999   67788999999864

>d1b0na2 a.35.1.3 (A:1-68) SinR repressor, DNA-binding domain {Bacillus subtilis [TaxId: 1423]}

class: All alpha proteins
fold: lambda repressor-like DNA-binding domains
superfamily: lambda repressor-like DNA-binding domains
family: SinR domain-like
domain: SinR repressor, DNA-binding domain
species: Bacillus subtilis [TaxId: 1423]

Probab=82.12  E-value=0.38  Score=26.74  Aligned_cols=20  Identities=5%  Similarity=0.360  Sum_probs=17.2

Q ss_pred             HHHHHhhhhhcCChhhHhhh
Q psy16018         68 ELYQKIAECYEFPAEEVSED   87 (89)
Q Consensus        68 ELY~kIae~f~i~~~eIl~~   87 (89)
                      +...+||++|++++++++.+
T Consensus        45 ~~l~~ia~~l~v~~~~l~~~   64 (68)
T d1b0na2          45 QFLEKVSAVLDVSVHTLLDE   64 (68)
T ss_dssp             HHHHHHHHHHTCCHHHHHCC
T ss_pred             HHHHHHHHHHCCcHHHHcCC
Confidence            45678999999999999875