Psyllid ID: psy16024

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310------

MSIAFKLKFLYLTFGTQQAMERGCRDLDQRIELYLDGERVDLPPIESVVVLNIPSWASGVDLWKLGRGNRKSGNGDGSHILSTFRRLLNPLQVVDLADKSPEEALQWVSLMPSSGQTLILAAGGDGTAAWILNTIHNMKLDPAPSVGIIPLGTGNDLSRVLGWGKLYDRDTCSPFQILDNLTRSKVAHLDRWSVQIKSIRQLRLTRALKCRWMYNYLSIGVDAQVALDFHNTRESSLYIFSSRAFNKFLYLTFGTQQAMERGCRDLDQRIELYLDGERVDLPPIESVVVLNIPSWASGVDLWKLGRGQKSPFTLTS

cccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHcccEEEcccccccEEEcccccccccccccccccccccccccccHHHHHHHHHHcccccEEEccccccHHHHHHHHHccccccEEEEEEccccHHHHHHHHHHHcccccccEEEEEEcccccHHHHHHccccccccccccHHHHHHHHHHccccccccccEEEHHHHHHHHHccccccEEcccccccHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHccccccccEEEEEEccEEEEcccEEEEEEEcccccccccccccccccccccccccc

ccEEEEcEEEEEEEccHHHHHHHHHHHHHHHHHHHccccccccccEEEEEcccccccccccccEEEEEcccccccHHHHHHHHHHHHHcccEEEEccccccccHHHHHcccccccccEEEEEcccccHHHHHHHHHHHcccccccEEEEEccccHHHHHHHccccccccccccHHHHHHHHccccEEEEccEEEEEEccccccccccccEEEEEccEEEcccHHHHHHHHHHHHHccHHHcHHHHcHHHHHHHHHHHHHHHHHHHHHccEEEEEcccEccccccEEEEEEEccccccccccccccccccccccccc

MSIAFKLKFLYLTFGTQQAMERGCRDLDQRIELYldgervdlppiesvvvlnipswasgvdlwklgrgnrksgngdgshILSTFRRLLnplqvvdladkspEEALQWVSLMPSSGQTLILAAGGDGTAAWILNTIHnmkldpapsvgiiplgtgndlsrvlgwgklydrdtcspfqildnltrskvahLDRWSVQIKSIRQLRLTRALKCRWMYNYLSIGVDAQVALdfhntressLYIFSSRAFNKFLYLTFGTQQAMERGCRDLDQRIELYldgervdlppiesvvvlnipswasgvdlwklgrgqkspftlts

MSIAFKLKFLYLTFGTQQAMERGCRDLDQRIELYLDGERVDLPPIESVVVLNIPSWASGVDLWKLGRGNRKSGNGDGSHILSTFRRLLNPLQVVDLADKSPEEALQWVSLMPSSGQTLILAAGGDGTAAWILNTIHNMKLDPAPSVGIIPLGTGNDLSRVLGWGKLYDRDTCSPFQIldnltrskvahldrwsvqiksirqlRLTRALKCRWMYNYLSIGVDAQVALDFHNTRESSLYIFSSRAFNKFLYLTFGTQQAMERGCRDLDQRIELYLDGERVDLPPIESVVVLNIPSWasgvdlwklgrgqkspftlts

**IAFKLKFLYLTFGTQQAMERGCRDLDQRIELYLDGERVDLPPIESVVVLNIPSWASGVDLWKLGRGN*******GSHILSTFRRLLNPLQVVDLADKSPEEALQWVSLMPSSGQTLILAAGGDGTAAWILNTIHNMKLDPAPSVGIIPLGTGNDLSRVLGWGKLYDRDTCSPFQILDNLTRSKVAHLDRWSVQIKSIRQLRLTRALKCRWMYNYLSIGVDAQVALDFHNTRESSLYIFSSRAFNKFLYLTFGTQQAMERGCRDLDQRIELYLDGERVDLPPIESVVVLNIPSWASGVDLWKLG***********

MSIAFKLKFLYLTFGTQQAMERGCRDLDQRIELYLDGERVDLPPIESVVVLNIPSWASGVDLWK***************ILSTFRRLLNPLQVVDLADKSPEEALQWVSLMPSSGQTLILAAGGDGTAAWILNTIHNMKLDPAPSVGIIPLGTGNDLSRVLGWGKLYDRDTCSPFQILDNLTRSKVAHLDRWSVQIKSIRQLRLTRALKCRWMYNYLSIGVDAQVALDFHNTRESSLYIFSSRAFNKFLYLTFGTQQAMERGCRDLDQRIELYLDGERVDLPPIESVVVLNIPSWASGVDLW**************

*SIAFKLKFLYLTFGTQQAMERGCRDLDQRIELYLDGERVDLPPIESVVVLNIPSWASGVDLWKLGRGNRKSGNGDGSHILSTFRRLLNPLQVVDLADKSPEEALQWVSLMPSSGQTLILAAGGDGTAAWILNTIHNMKLDPAPSVGIIPLGTGNDLSRVLGWGKLYDRDTCSPFQILDNLTRSKVAHLDRWSVQIKSIRQLRLTRALKCRWMYNYLSIGVDAQVALDFHNTRESSLYIFSSRAFNKFLYLTFGTQQAMERGCRDLDQRIELYLDGERVDLPPIESVVVLNIPSWASGVDLWK*************

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		316	2.2.26 [Sep-21-2011]
Q9R1C6		564	Diacylglycerol kinase eps	yes	N/A	0.731	0.409	0.429	2e-48
P52429		567	Diacylglycerol kinase eps	yes	N/A	0.75	0.417	0.421	2e-48
Q6P5E8		934	Diacylglycerol kinase the	no	N/A	0.718	0.243	0.395	3e-41
P52824		942	Diacylglycerol kinase the	no	N/A	0.718	0.240	0.386	1e-40
Q03603		795	Probable diacylglycerol k	no	N/A	0.743	0.295	0.384	4e-40
Q91WG7		788	Diacylglycerol kinase gam	no	N/A	0.724	0.290	0.398	5e-40
P20192		734	Diacylglycerol kinase alp	yes	N/A	0.724	0.311	0.398	5e-40
P49620		788	Diacylglycerol kinase gam	no	N/A	0.724	0.290	0.398	6e-40
P23743		735	Diacylglycerol kinase alp	no	N/A	0.724	0.311	0.398	6e-40
P49619		791	Diacylglycerol kinase gam	no	N/A	0.724	0.289	0.398	1e-39

>sp\|Q9R1C6\|DGKE_MOUSE Diacylglycerol kinase epsilon OS=Mus musculus GN=Dgke PE=2 SV=1	Back alignment and function desciption

 Score =  192 bits (489), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 104/242 (42%), Positives = 143/242 (59%), Gaps = 11/242 (4%)

Query: 68  GNRKSGNGDGSHILSTFRRLLNPLQVVDLADKSPEEALQWVSLMPSSGQTLILAAGGDGT 127
            N +SG   G  +L  F+ LLNP+QV D+    P +ALQ  +L+P      +L  GGDGT
Sbjct: 221 ANSRSGTNMGEGLLGEFKILLNPVQVFDVTKTPPIKALQLCTLLPYY-SVRVLVCGGDGT 279

Query: 128 AAWILNTIHNMKLDPA----PSVGIIPLGTGNDLSRVLGWGKLYDRDTCSPFQILDNLTR 183
             W+L+ I  MK+       P V ++PLGTGNDLS  LGWG  Y  +     Q+L N+  
Sbjct: 280 VGWVLDAIDEMKIKGQEKYIPEVAVLPLGTGNDLSNTLGWGTGYAGEI-PVAQVLRNVME 338

Query: 184 SKVAHLDRWSVQI--KSIRQLRLTRALKCRWMYNYLSIGVDAQVALDFHNTRESSLYIFS 241
           +    LDRW VQ+  K    LR  +      M NY S+G DA +AL+FH  RE +  +FS
Sbjct: 339 ADGIKLDRWKVQVTNKGYYNLRKPKEFT---MNNYFSVGPDALMALNFHAHREKAPSLFS 395

Query: 242 SRAFNKFLYLTFGTQQAMERGCRDLDQRIELYLDGERVDLPPIESVVVLNIPSWASGVDL 301
           SR  NK +YL +GT+  + + C+DL+++IEL LDGERV+LP +E ++VLNI  W  G  L
Sbjct: 396 SRILNKAVYLFYGTKDCLVQECKDLNKKIELELDGERVELPNLEGIIVLNIGYWGGGCRL 455

Query: 302 WK 303
           W+
Sbjct: 456 WE 457

Highly selective for arachidonate-containing species of diacylglycerol (DAG). May terminate signals transmitted through arachidonoyl-DAG or may contribute to the synthesis of phospholipids with defined fatty acid composition.
Mus musculus (taxid: 10090)
EC: 2EC: .EC: 7EC: .EC: 1EC: .EC: 1EC: 0EC: 7

>sp\|P52429\|DGKE_HUMAN Diacylglycerol kinase epsilon OS=Homo sapiens GN=DGKE PE=2 SV=1	Back alignment and function description

>sp\|Q6P5E8\|DGKQ_MOUSE Diacylglycerol kinase theta OS=Mus musculus GN=Dgkq PE=1 SV=1	Back alignment and function description

>sp\|P52824\|DGKQ_HUMAN Diacylglycerol kinase theta OS=Homo sapiens GN=DGKQ PE=1 SV=2	Back alignment and function description

>sp\|Q03603\|DGK3_CAEEL Probable diacylglycerol kinase 3 OS=Caenorhabditis elegans GN=dgk-3 PE=3 SV=3	Back alignment and function description

>sp\|Q91WG7\|DGKG_MOUSE Diacylglycerol kinase gamma OS=Mus musculus GN=Dgkg PE=2 SV=1	Back alignment and function description

>sp\|P20192\|DGKA_PIG Diacylglycerol kinase alpha OS=Sus scrofa GN=DGKA PE=1 SV=1	Back alignment and function description

>sp\|P49620\|DGKG_RAT Diacylglycerol kinase gamma OS=Rattus norvegicus GN=Dgkg PE=2 SV=1	Back alignment and function description

>sp\|P23743\|DGKA_HUMAN Diacylglycerol kinase alpha OS=Homo sapiens GN=DGKA PE=1 SV=3	Back alignment and function description

>sp\|P49619\|DGKG_HUMAN Diacylglycerol kinase gamma OS=Homo sapiens GN=DGKG PE=2 SV=3	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		316
307214708		424	Diacylglycerol kinase epsilon [Harpegnat	0.797	0.594	0.579	1e-78
332020736		528	Diacylglycerol kinase epsilon [Acromyrme	0.803	0.481	0.559	6e-78
350423356		527	PREDICTED: diacylglycerol kinase epsilon	0.797	0.478	0.559	4e-77
340724215		527	PREDICTED: diacylglycerol kinase epsilon	0.797	0.478	0.559	6e-77
383858012		531	PREDICTED: diacylglycerol kinase epsilon	0.778	0.463	0.566	3e-76
307178584		423	Diacylglycerol kinase epsilon [Camponotu	0.75	0.560	0.585	3e-75
156547939		527	PREDICTED: diacylglycerol kinase epsilon	0.803	0.481	0.532	1e-73
380011106		482	PREDICTED: diacylglycerol kinase epsilon	0.746	0.489	0.567	1e-70
242015218		543	Diacylglycerol kinase epsilon, putative	0.829	0.482	0.516	3e-69
328718456		531	PREDICTED: diacylglycerol kinase epsilon	0.756	0.450	0.506	7e-64

>gi\|307214708\|gb\|EFN89637.1\| Diacylglycerol kinase epsilon [Harpegnathos saltator]	Back alignment and taxonomy information

 Score =  299 bits (765), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 150/259 (57%), Positives = 186/259 (71%), Gaps = 7/259 (2%)

Query: 47  SVVVLNIPSWASGVDLWKLGRGNRKSGNGDGSHILSTFRRLLNPLQVVDLADKSPEEALQ 106
           SV+  N P W   + +     GNRKSGN DG  ILS FRRLLNP QVVDLA++ P  AL+
Sbjct: 85  SVITPNWPKWNPIIVV-----GNRKSGNNDGDKILSLFRRLLNPAQVVDLAERDPVAALE 139

Query: 107 WVSLMPSSGQTLILAAGGDGTAAWILNTIHNMKLDPAPSVGIIPLGTGNDLSRVLGWGKL 166
           W  L+  +  T +L AGGDGT +W+LNTI  + L P PSV IIPLGTGNDLSRVLGWGK 
Sbjct: 140 WCRLLGKTPCT-VLVAGGDGTISWLLNTIDKLGLQPVPSVAIIPLGTGNDLSRVLGWGKE 198

Query: 167 YDRDTCSPFQILDNLTRSKVAHLDRWSVQIKSIRQLRLTRALKCRWMYNYLSIGVDAQVA 226
           +D+    P ++L  +  ++   LDRWSV+I+  R L      +  +MYNY+S+GVDAQV 
Sbjct: 199 HDKHM-DPVEVLQKIRAAQEVKLDRWSVKIEPNRGLGFRGTHRTLFMYNYISVGVDAQVT 257

Query: 227 LDFHNTRESSLYIFSSRAFNKFLYLTFGTQQAMERGCRDLDQRIELYLDGERVDLPPIES 286
           L+FH TRES  Y+FS R FNK LYL FGTQQ +ER C+DLDQ +E+YLD ++V+LP IES
Sbjct: 258 LNFHRTRESRFYLFSHRIFNKLLYLCFGTQQVVERECKDLDQSLEVYLDDQKVELPSIES 317

Query: 287 VVVLNIPSWASGVDLWKLG 305
           VVVLNIPSWA+GVDLWK+G
Sbjct: 318 VVVLNIPSWAAGVDLWKMG 336

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi\|332020736\|gb\|EGI61141.1\| Diacylglycerol kinase epsilon [Acromyrmex echinatior]	Back alignment and taxonomy information

>gi\|350423356\|ref\|XP_003493455.1\| PREDICTED: diacylglycerol kinase epsilon-like [Bombus impatiens]	Back alignment and taxonomy information

>gi\|340724215\|ref\|XP_003400479.1\| PREDICTED: diacylglycerol kinase epsilon-like [Bombus terrestris]	Back alignment and taxonomy information

>gi\|383858012\|ref\|XP_003704497.1\| PREDICTED: diacylglycerol kinase epsilon-like [Megachile rotundata]	Back alignment and taxonomy information

>gi\|307178584\|gb\|EFN67260.1\| Diacylglycerol kinase epsilon [Camponotus floridanus]	Back alignment and taxonomy information

>gi\|156547939\|ref\|XP_001604628.1\| PREDICTED: diacylglycerol kinase epsilon-like [Nasonia vitripennis]	Back alignment and taxonomy information

>gi\|380011106\|ref\|XP_003689653.1\| PREDICTED: diacylglycerol kinase epsilon-like [Apis florea]	Back alignment and taxonomy information

>gi\|242015218\|ref\|XP_002428269.1\| Diacylglycerol kinase epsilon, putative [Pediculus humanus corporis] gi\|212512843\|gb\|EEB15531.1\| Diacylglycerol kinase epsilon, putative [Pediculus humanus corporis]	Back alignment and taxonomy information

>gi\|328718456\|ref\|XP_001949393.2\| PREDICTED: diacylglycerol kinase epsilon-like [Acyrthosiphon pisum]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		316
FB\|FBgn0020930		534	Dgkepsilon "Diacyl glycerol ki	0.740	0.438	0.470	2.5e-56
UNIPROTKB\|E1C3R5		567	DGKE "Uncharacterized protein"	0.759	0.423	0.450	3.2e-49
UNIPROTKB\|F1NL48		532	DGKE "Uncharacterized protein"	0.759	0.451	0.450	3.2e-49
UNIPROTKB\|E1B7K6		564	DGKE "Uncharacterized protein"	0.75	0.420	0.433	2.6e-47
UNIPROTKB\|E2RLE5		564	DGKE "Uncharacterized protein"	0.75	0.420	0.433	5.4e-47
UNIPROTKB\|F1MAC7		567	LOC497978 "Protein LOC497978"	0.75	0.417	0.441	8.8e-47
MGI\|MGI:1889276		564	Dgke "diacylglycerol kinase, e	0.75	0.420	0.433	1.1e-46
UNIPROTKB\|I3L112		456	DGKE "Diacylglycerol kinase ep	0.75	0.519	0.429	1.4e-46
UNIPROTKB\|P52429		567	DGKE "Diacylglycerol kinase ep	0.75	0.417	0.429	1.4e-46
WB\|WBGene00000959		536	dgk-2 [Caenorhabditis elegans	0.727	0.429	0.434	7.1e-45

FB\|FBgn0020930 Dgkepsilon "Diacyl glycerol kinase epsilon" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

 Score = 580 (209.2 bits), Expect = 2.5e-56, P = 2.5e-56
 Identities = 112/238 (47%), Positives = 160/238 (67%)

Query:    69 NRKSGNGDGSHILSTFRRLLNPLQVVDLADKSPEEALQWVSLMPSSGQTLILAAGGDGTA 128
             N KSG+  G+++LS  R  L+PLQV++L  + P++ALQW +   S     IL AGGDGT 
Sbjct:   211 NTKSGSSTGANVLSLLRGYLHPLQVMELGSRGPQDALQWAA-KASPRPCRILVAGGDGTI 269

Query:   129 AWILNTIHNMKLDPAPSVGIIPLGTGNDLSRVLGWGKLYDRDTCSPFQILDNLTRSKVAH 188
              W+LNTI+ + + P PSV I+PLGTGNDLSRVLGWG         P +IL ++ R++  +
Sbjct:   270 GWVLNTIYTLNIKPQPSVAIMPLGTGNDLSRVLGWGA-EPPSVLDPVKILRSIRRARSVN 328

Query:   189 LDRWSVQIKSIR-QLRLTR-ALKCRWMYNYLSIGVDAQVALDFHNTRESSLYIFSSRAFN 246
             LDR+ +QI+ +  +L + R   K   +YNY S+GVDA +  +FH TRES  Y+ SSR FN
Sbjct:   329 LDRFDLQIEKLHYRLPIQRHPTKTIHVYNYFSVGVDAYITYNFHKTRESRFYLLSSRIFN 388

Query:   247 KFLYLTFGTQQAMERGCRDLDQRIELYLDGERVDLPPIESVVVLNIPSWASGVDLWKL 304
             K LY TFGTQQ M+ GC  +++++ LYLD + V LP ++++V LNI SW +G ++ +L
Sbjct:   389 KLLYFTFGTQQVMQPGCEHIEEKLTLYLDNKPVQLPELQALVFLNIDSWGAGCNVCEL 446

GO:0019992 "diacylglycerol binding" evidence=ISS

GO:0004143 "diacylglycerol kinase activity" evidence=ISS;IDA;NAS

GO:0016310 "phosphorylation" evidence=IDA;NAS

GO:0007205 "protein kinase C-activating G-protein coupled receptor signaling pathway" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

UNIPROTKB\|E1C3R5 DGKE "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|F1NL48 DGKE "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|E1B7K6 DGKE "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|E2RLE5 DGKE "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|F1MAC7 LOC497978 "Protein LOC497978" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

MGI\|MGI:1889276 Dgke "diacylglycerol kinase, epsilon" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|I3L112 DGKE "Diacylglycerol kinase epsilon" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|P52429 DGKE "Diacylglycerol kinase epsilon" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

WB\|WBGene00000959 dgk-2 [Caenorhabditis elegans (taxid:6239)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.7.1.107	0.737
3rd Layer	2.7.1	0.691

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Alignment Graph	Length	Definition	E-value
Query		316
pfam00609		157	pfam00609, DAGK_acc, Diacylglycerol kinase accesso	2e-40
smart00045		160	smart00045, DAGKa, Diacylglycerol kinase accessory	2e-38
smart00046		124	smart00046, DAGKc, Diacylglycerol kinase catalytic	9e-32
pfam00781		127	pfam00781, DAGK_cat, Diacylglycerol kinase catalyt	8e-28
smart00045		160	smart00045, DAGKa, Diacylglycerol kinase accessory	3e-20
pfam00609		157	pfam00609, DAGK_acc, Diacylglycerol kinase accesso	1e-17
COG1597		301	COG1597, LCB5, Sphingosine kinase and enzymes rela	1e-14
PRK13337		304	PRK13337, PRK13337, putative lipid kinase; Reviewe	4e-07
TIGR00147		293	TIGR00147, TIGR00147, lipid kinase, YegS/Rv2252/Bm	1e-06
PRK13055		334	PRK13055, PRK13055, putative lipid kinase; Reviewe	1e-06
PRK00861		300	PRK00861, PRK00861, putative lipid kinase; Reviewe	3e-06
PRK13059		295	PRK13059, PRK13059, putative lipid kinase; Reviewe	6e-06
PRK12361		547	PRK12361, PRK12361, hypothetical protein; Provisio	1e-05
PRK13054		300	PRK13054, PRK13054, lipid kinase; Reviewed	2e-05
PRK13057		287	PRK13057, PRK13057, putative lipid kinase; Reviewe	2e-04
TIGR03702		293	TIGR03702, lip_kinase_YegS, lipid kinase YegS	5e-04

>gnl\|CDD\|216019 pfam00609, DAGK_acc, Diacylglycerol kinase accessory domain	Back alignment and domain information

 Score =  138 bits (350), Expect = 2e-40
 Identities = 46/92 (50%), Positives = 65/92 (70%), Gaps = 1/92 (1%)

Query: 213 MYNYLSIGVDAQVALDFHNTRESSLYIFSSRAFNKFLYLTFGTQQAMERGCRDLDQRIEL 272
           M NY SIGVDA++AL FH  RE    +F+SR  NK +Y  FG ++ ++R C++L +++EL
Sbjct: 2   MNNYFSIGVDARIALGFHRLREEHPELFNSRLKNKLIYGKFGFKKMLQRSCKNLIEKVEL 61

Query: 273 YLDGERVDLPP-IESVVVLNIPSWASGVDLWK 303
            +DG+ V LP  +E +VVLNIPS+A G DLW 
Sbjct: 62  EVDGKDVPLPSSLEGIVVLNIPSYAGGTDLWG 93

Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. This domain is assumed to be an accessory domain: its function is unknown. Length = 157

>gnl\|CDD\|214486 smart00045, DAGKa, Diacylglycerol kinase accessory domain (presumed)	Back alignment and domain information

>gnl\|CDD\|214487 smart00046, DAGKc, Diacylglycerol kinase catalytic domain (presumed)	Back alignment and domain information

>gnl\|CDD\|216116 pfam00781, DAGK_cat, Diacylglycerol kinase catalytic domain	Back alignment and domain information

>gnl\|CDD\|214486 smart00045, DAGKa, Diacylglycerol kinase accessory domain (presumed)	Back alignment and domain information

>gnl\|CDD\|216019 pfam00609, DAGK_acc, Diacylglycerol kinase accessory domain	Back alignment and domain information

>gnl\|CDD\|224513 COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	Back alignment and domain information

>gnl\|CDD\|183982 PRK13337, PRK13337, putative lipid kinase; Reviewed	Back alignment and domain information

>gnl\|CDD\|161732 TIGR00147, TIGR00147, lipid kinase, YegS/Rv2252/BmrU family	Back alignment and domain information

>gnl\|CDD\|237282 PRK13055, PRK13055, putative lipid kinase; Reviewed	Back alignment and domain information

>gnl\|CDD\|234850 PRK00861, PRK00861, putative lipid kinase; Reviewed	Back alignment and domain information

>gnl\|CDD\|183858 PRK13059, PRK13059, putative lipid kinase; Reviewed	Back alignment and domain information

>gnl\|CDD\|183473 PRK12361, PRK12361, hypothetical protein; Provisional	Back alignment and domain information

>gnl\|CDD\|237281 PRK13054, PRK13054, lipid kinase; Reviewed	Back alignment and domain information

>gnl\|CDD\|183857 PRK13057, PRK13057, putative lipid kinase; Reviewed	Back alignment and domain information

>gnl\|CDD\|163414 TIGR03702, lip_kinase_YegS, lipid kinase YegS	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		316
PRK11914		306	diacylglycerol kinase; Reviewed	100.0
TIGR03702		293	lip_kinase_YegS lipid kinase YegS. Members of this	100.0
PRK13057		287	putative lipid kinase; Reviewed	100.0
KOG1169\|consensus		634		100.0
PRK13059		295	putative lipid kinase; Reviewed	100.0
PRK13055		334	putative lipid kinase; Reviewed	100.0
PRK13337		304	putative lipid kinase; Reviewed	100.0
PRK13054		300	lipid kinase; Reviewed	100.0
PLN02958		481	diacylglycerol kinase/D-erythro-sphingosine kinase	100.0
PRK00861		300	putative lipid kinase; Reviewed	100.0
COG1597		301	LCB5 Sphingosine kinase and enzymes related to euk	100.0
KOG0782\|consensus		1004		100.0
TIGR00147		293	lipid kinase, YegS/Rv2252/BmrU family. The E. coli	100.0
PRK12361		547	hypothetical protein; Provisional	100.0
PLN02204		601	diacylglycerol kinase	100.0
KOG1116\|consensus		579		100.0
KOG1170\|consensus		1099		99.98
PF00781		130	DAGK_cat: Diacylglycerol kinase catalytic domain;	99.93
smart00046		124	DAGKc Diacylglycerol kinase catalytic domain (pres	99.92
KOG1115\|consensus		516		99.9
PF00609		161	DAGK_acc: Diacylglycerol kinase accessory domain;	99.81
smart00045		160	DAGKa Diacylglycerol kinase accessory domain (pres	99.76
KOG1170\|consensus		1099		99.57
KOG4435\|consensus		535		99.43
KOG1169\|consensus		634		99.3
PF00609		161	DAGK_acc: Diacylglycerol kinase accessory domain;	99.22
KOG0782\|consensus		1004		98.83
PRK03708		277	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	98.77
COG3199		355	Predicted inorganic polyphosphate/ATP-NAD kinase [	98.53
PRK02645		305	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	98.51
PRK03378		292	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	98.48
PRK01231		295	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	97.77
PF01513		285	NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Me	97.57
PRK02155		291	ppnK NAD(+)/NADH kinase family protein; Provisiona	97.42
PRK01911		292	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	97.29
PRK14077		287	pnk inorganic polyphosphate/ATP-NAD kinase; Provis	97.18
PRK03372		306	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	97.16
PRK02649		305	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	97.06
PLN02935		508	Bifunctional NADH kinase/NAD(+) kinase	96.96
PRK04539		296	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	96.92
PLN02727		986	NAD kinase	96.82
PRK04885		265	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	96.66
PRK03501		264	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	96.62
PRK14075		256	pnk inorganic polyphosphate/ATP-NAD kinase; Provis	96.48
PRK00561		259	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	96.39
smart00045		160	DAGKa Diacylglycerol kinase accessory domain (pres	96.26
PRK01185		271	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	96.16
PRK14076		569	pnk inorganic polyphosphate/ATP-NAD kinase; Provis	95.93
PLN02929		301	NADH kinase	95.63
PRK02231		272	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	94.57
COG0061		281	nadF NAD kinase [Coenzyme metabolism]	93.9
PRK04761		246	ppnK inorganic polyphosphate/ATP-NAD kinase; Revie	93.72
PF00731		150	AIRC: AIR carboxylase; InterPro: IPR000031 Phospho	90.28
KOG4180\|consensus		395		89.14
PF10254		414	Pacs-1: PACS-1 cytosolic sorting protein; InterPro	88.89
cd08173		339	Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro	87.81
PTZ00286		459	6-phospho-1-fructokinase; Provisional	87.38
KOG2178\|consensus		409		85.82
cd08181		357	PPD-like 1,3-propanediol dehydrogenase-like (PPD).	85.73
cd08185		380	Fe-ADH1 Iron-containing alcohol dehydrogenases-lik	85.65
cd08186		383	Fe-ADH8 Iron-containing alcohol dehydrogenase. Typ	85.36
PRK06830		443	diphosphate--fructose-6-phosphate 1-phosphotransfe	84.76
cd07766		332	DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like)	84.66
cd08180		332	PDD 1,3-propanediol dehydrogenase (PPD) catalyzes	84.14
cd08194		375	Fe-ADH6 Iron-containing alcohol dehydrogenases-lik	84.07
cd08176		377	LPO Lactadehyde:propanediol oxidoreductase (LPO) c	83.97
cd08172		347	GlyDH-like1 Glycerol dehydrogenases-like. Glycerol	83.17
PLN02564		484	6-phosphofructokinase	83.02
PRK00843		350	egsA NAD(P)-dependent glycerol-1-phosphate dehydro	82.09
cd08171		345	GlyDH-like2 Glycerol dehydrogenase-like. Glycerol	80.98
TIGR02483		324	PFK_mixed phosphofructokinase. Members of this fam	80.89
TIGR02482		301	PFKA_ATP 6-phosphofructokinase. 6-phosphofructokin	80.03

>PRK11914 diacylglycerol kinase; Reviewed	Back alignment and domain information

Probab=100.00  E-value=2.6e-45  Score=334.08  Aligned_cols=221  Identities=21%  Similarity=0.238  Sum_probs=189.9

Q ss_pred             ccccccccCCCCCCCCcchHHHHHhhcCCce--EEEcccCChHHHHHHHHhCCCCCceEEEEEcCcchHHHHHHHHHcCC
Q psy16024         62 LWKLGRGNRKSGNGDGSHILSTFRRLLNPLQ--VVDLADKSPEEALQWVSLMPSSGQTLILAAGGDGTAAWILNTIHNMK  139 (316)
Q Consensus        62 ~~~~vivNp~sG~~~~~~~~~~~~~~l~~~~--v~~~~t~~~~~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l~~~~  139 (316)
                      +++++|+||.||++++.+.++++.+.|+...  +..+.|+.++|+.++++++..+++|.||++|||||+|||+|++... 
T Consensus         9 ~~~~iI~NP~sG~g~~~~~~~~~~~~l~~~g~~~~~~~t~~~~~~~~~a~~~~~~~~d~vvv~GGDGTi~evv~~l~~~-   87 (306)
T PRK11914          9 GKVTVLTNPLSGHGAAPHAAERAIARLHHRGVDVVEIVGTDAHDARHLVAAALAKGTDALVVVGGDGVISNALQVLAGT-   87 (306)
T ss_pred             ceEEEEECCCCCCCcHHHHHHHHHHHHHHcCCeEEEEEeCCHHHHHHHHHHHHhcCCCEEEEECCchHHHHHhHHhccC-
Confidence            4899999999999998888888888887643  3334677799999999988777789999999999999999999754 


Q ss_pred             CCCCCcEEEecCCCcchhhhhhCCCCCCCCCCCCHHHHHHHHHccCCcceeeEEEEEeechhhhhhcccceeEEEeeeee
Q psy16024        140 LDPAPSVGIIPLGTGNDLSRVLGWGKLYDRDTCSPFQILDNLTRSKVAHLDRWSVQIKSIRQLRLTRALKCRWMYNYLSI  219 (316)
Q Consensus       140 ~~~~~~lgiiP~GTgNd~Ar~lg~~~~~~~~~~~~~~~l~~l~~~~~~~~D~~~v~~~~~~~~~~~~~~~~~~f~n~~gi  219 (316)
                         ++|||+||+||+|||||+||++.      .+++++++.+.+++++++|+++++....         ..++|+|++|+
T Consensus        88 ---~~~lgiiP~GT~NdfAr~lg~~~------~~~~~a~~~i~~g~~~~iDlg~v~~~~~---------~~~~f~n~~~~  149 (306)
T PRK11914         88 ---DIPLGIIPAGTGNDHAREFGIPT------GDPEAAADVIVDGWTETVDLGRIQDDDG---------IVKWFGTVAAT  149 (306)
T ss_pred             ---CCcEEEEeCCCcchhHHHcCCCC------CCHHHHHHHHHcCCceEEEEEEEecCCC---------CcEEEEEEEee
Confidence               58999999999999999999974      2689999999999999999999974221         24799999999


Q ss_pred             eeeeeeeccchhhhccccccccccccccchhhhhhhHHHhhccccCccccEEEEECC-eeecCCCceeEEEEccccccCC
Q psy16024        220 GVDAQVALDFHNTRESSLYIFSSRAFNKFLYLTFGTQQAMERGCRDLDQRIELYLDG-ERVDLPPIESVVVLNIPSWASG  298 (316)
Q Consensus       220 G~dA~v~~~~~~~r~~~~~~~~~~~~g~~~Y~~~~~~~l~~~~~~~~~~~~~i~~dg-~~~~~~~~~~~~v~N~~~~ggg  298 (316)
                      ||||.|+...++.+         ..+|+++|.+++++.+++.+    ++++++++|| +..+. ++.++.|+|+++||||
T Consensus       150 G~~a~v~~~~~~~k---------~~~G~~aY~~~~l~~l~~~~----~~~~~i~~dg~~~~~~-~~~~~~v~N~~~~GG~  215 (306)
T PRK11914        150 GFDSLVTDRANRMR---------WPHGRMRYNLAMLAELSKLR----PLPFRLVLDGTEEIVT-DLTLAAFGNTRSYGGG  215 (306)
T ss_pred             ehHHHHHHHHHhcc---------ccCCchhhHHHHHHHHHhcC----CCcEEEEEeCCeEEEe-eEEEEEEeCcccccCC
Confidence            99999987765432         23699999999999998865    6889999999 56654 6888999999999999


Q ss_pred             CCCCCCCCCCCCCcccc
Q psy16024        299 VDLWKLGRGQKSPFTLT  315 (316)
Q Consensus       299 ~~~~p~a~~~DG~ldv~  315 (316)
                      +.++|.|+++||+|||+
T Consensus       216 ~~~~p~a~~~DG~ldv~  232 (306)
T PRK11914        216 MLICPNADHTDGLLDIT  232 (306)
T ss_pred             ceeCCCCcCCCCcEEEE
Confidence            99999999999999986

>TIGR03702 lip_kinase_YegS lipid kinase YegS	Back alignment and domain information

>PRK13057 putative lipid kinase; Reviewed	Back alignment and domain information

>KOG1169\|consensus	Back alignment and domain information

>PRK13059 putative lipid kinase; Reviewed	Back alignment and domain information

>PRK13055 putative lipid kinase; Reviewed	Back alignment and domain information

>PRK13337 putative lipid kinase; Reviewed	Back alignment and domain information

>PRK13054 lipid kinase; Reviewed	Back alignment and domain information

>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase	Back alignment and domain information

>PRK00861 putative lipid kinase; Reviewed	Back alignment and domain information

>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	Back alignment and domain information

>KOG0782\|consensus	Back alignment and domain information

>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family	Back alignment and domain information

>PRK12361 hypothetical protein; Provisional	Back alignment and domain information

>PLN02204 diacylglycerol kinase	Back alignment and domain information

>KOG1116\|consensus	Back alignment and domain information

>KOG1170\|consensus	Back alignment and domain information

>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]	Back alignment and domain information

>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed)	Back alignment and domain information

>KOG1115\|consensus	Back alignment and domain information

>PF00609 DAGK_acc: Diacylglycerol kinase accessory domain; InterPro: IPR000756 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases	Back alignment and domain information

>smart00045 DAGKa Diacylglycerol kinase accessory domain (presumed)	Back alignment and domain information

>KOG1170\|consensus	Back alignment and domain information

>KOG4435\|consensus	Back alignment and domain information

>KOG1169\|consensus	Back alignment and domain information

>PF00609 DAGK_acc: Diacylglycerol kinase accessory domain; InterPro: IPR000756 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases	Back alignment and domain information

>KOG0782\|consensus	Back alignment and domain information

>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional	Back alignment and domain information

>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]	Back alignment and domain information

>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional	Back alignment and domain information

>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional	Back alignment and domain information

>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional	Back alignment and domain information

>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2	Back alignment and domain information

>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional	Back alignment and domain information

>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional	Back alignment and domain information

>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional	Back alignment and domain information

>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional	Back alignment and domain information

>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional	Back alignment and domain information

>PLN02935 Bifunctional NADH kinase/NAD(+) kinase	Back alignment and domain information

>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional	Back alignment and domain information

>PLN02727 NAD kinase	Back alignment and domain information

>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional	Back alignment and domain information

>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional	Back alignment and domain information

>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional	Back alignment and domain information

>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional	Back alignment and domain information

>smart00045 DAGKa Diacylglycerol kinase accessory domain (presumed)	Back alignment and domain information

>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional	Back alignment and domain information

>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional	Back alignment and domain information

>PLN02929 NADH kinase	Back alignment and domain information

>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional	Back alignment and domain information

>COG0061 nadF NAD kinase [Coenzyme metabolism]	Back alignment and domain information

>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed	Back alignment and domain information

>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE	Back alignment and domain information

>KOG4180\|consensus	Back alignment and domain information

>PF10254 Pacs-1: PACS-1 cytosolic sorting protein; InterPro: IPR019381 PACS-1 is a cytosolic sorting protein that directs the localisation of membrane proteins in the trans-Golgi network (TGN)/endosomal system	Back alignment and domain information

>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme	Back alignment and domain information

>PTZ00286 6-phospho-1-fructokinase; Provisional	Back alignment and domain information

>KOG2178\|consensus	Back alignment and domain information

>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD)	Back alignment and domain information

>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like	Back alignment and domain information

>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase	Back alignment and domain information

>PRK06830 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional	Back alignment and domain information

>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH)	Back alignment and domain information

>cd08180 PDD 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism	Back alignment and domain information

>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like	Back alignment and domain information

>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria	Back alignment and domain information

>cd08172 GlyDH-like1 Glycerol dehydrogenases-like	Back alignment and domain information

>PLN02564 6-phosphofructokinase	Back alignment and domain information

>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed	Back alignment and domain information

>cd08171 GlyDH-like2 Glycerol dehydrogenase-like	Back alignment and domain information

>TIGR02483 PFK_mixed phosphofructokinase	Back alignment and domain information

>TIGR02482 PFKA_ATP 6-phosphofructokinase	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		316
2jgr_A		299	Crystal Structure Of Yegs In Complex With Adp Lengt		3e-04
2bon_A		332	Structure Of An Escherichia Coli Lipid Kinase (Yegs		3e-04

>pdb|2JGR|A Chain A, Crystal Structure Of Yegs In Complex With Adp Length = 299

Back alignment and structure

Iteration: 1

Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 21/67 (31%), Positives = 36/67 (53%) Query: 103 EALQWVSLMPSSGQTLILAAGGDGTAAWILNTIHNMKLDPAPSVGIIPLGTGNDLSRVLG 162 +A ++V G ++A GGDGT + + + D P++GI+PLGT ND + +G Sbjct: 45 DAARYVEEARKFGVATVIAGGGDGTINEVSTALIQCEGDDIPALGILPLGTANDFATSVG 104 Query: 163 WGKLYDR 169 + D+ Sbjct: 105 IPEALDK 111

PyMOL of 2jgr

>pdb|2BON|A Chain A, Structure Of An Escherichia Coli Lipid Kinase (Yegs) Length = 332

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		316
2qv7_A		337	Diacylglycerol kinase DGKB; alpha-beta domain 1, b	5e-18
3s40_A		304	Diacylglycerol kinase; structural genomics, the ce	3e-16
2bon_A		332	Lipid kinase; DAG kinase, transferase; 1.90A {Esch	7e-16

>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A Length = 337	Back alignment and structure

 Score = 82.0 bits (203), Expect = 5e-18
 Identities = 42/234 (17%), Positives = 67/234 (28%), Gaps = 42/234 (17%)

Query: 69  NRKSGNGDGSHILSTFRRLLNP--LQVVDLADKSPEEALQWVSLMPSSGQTLILAAGGDG 126
           N  SG       L      L     +    A +   +A             +++AAGGDG
Sbjct: 32  NPTSGKEQFKRELPDALIKLEKAGYETSAYATEKIGDATLEAERAMHENYDVLIAAGGDG 91

Query: 127 TAAWILNTIHNMKLDPAPSVGIIPLGTGNDLSRVLGWGKLYDRDTCSPFQILDNLTRSKV 186
           T   ++N I   +    P +G+IP+GT ND  R L                LD +     
Sbjct: 92  TLNEVVNGI--AEKPNRPKLGVIPMGTVNDFGRALHIPN-------DIMGALDVIIEGHS 142

Query: 187 AHLDRWSVQIKSIRQLRLTRALKC--RWMYNYLSIGVDAQVALDFHNTRESSLYIFSSRA 244
             +D                  K   R+  N  + G   QV+ +  +             
Sbjct: 143 TKVD----------------IGKMNNRYFINLAAGGQLTQVSYETPSK--------LKSI 178

Query: 245 FNKFLYLTFGTQQAMERGCRDLDQRIELYLDGERVDLPPIESVVVLNIPSWASG 298
              F Y   G +       +     + +  DG       +    +    S A  
Sbjct: 179 VGPFAYYIKGFEMLP----QMKAVDLRIEYDGNVFQGEAL-LFFLGLTNSMAGF 227

PyMOL of 2qv7

>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A Length = 304	Back alignment and structure

>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A Length = 332	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		316
3s40_A		304	Diacylglycerol kinase; structural genomics, the ce	100.0
2qv7_A		337	Diacylglycerol kinase DGKB; alpha-beta domain 1, b	100.0
2bon_A		332	Lipid kinase; DAG kinase, transferase; 1.90A {Esch	100.0
1yt5_A		258	Inorganic polyphosphate/ATP-NAD kinase; domain 1:	99.32
2an1_A		292	Putative kinase; structural genomics, PSI, protein	99.32
1u0t_A		307	Inorganic polyphosphate/ATP-NAD kinase; alpha-beta	99.22
2i2c_A		272	Probable inorganic polyphosphate/ATP-NAD kinase 1;	99.21
3afo_A		388	NADH kinase POS5; alpha/beta+BETA sandwich, ATP-bi	97.68
1z0s_A		278	Probable inorganic polyphosphate/ATP-NAD kinase; A	96.67
3pfn_A		365	NAD kinase; structural genomics consortium, SNP, S	94.67
3ors_A		163	N5-carboxyaminoimidazole ribonucleotide mutase; is	89.16
4grd_A		173	N5-CAIR mutase, phosphoribosylaminoimidazole carbo	87.36
3iv7_A		364	Alcohol dehydrogenase IV; NP_602249.1, iron-contai	83.52
3oow_A		166	Phosphoribosylaminoimidazole carboxylase,catalyic;	83.44
1o2d_A		371	Alcohol dehydrogenase, iron-containing; TM0920, st	82.83
3jzd_A		358	Iron-containing alcohol dehydrogenase; YP_298327.1	81.09
3hl0_A		353	Maleylacetate reductase; structur genomics, PSI-2,	81.08

>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A	Back alignment and structure

Probab=100.00  E-value=1e-46  Score=341.70  Aligned_cols=218  Identities=21%  Similarity=0.205  Sum_probs=174.1

Q ss_pred             CccccccccCCCCCCCCcchHHHHHhhcCCce--EEEcccCChHHHHHHHHhCCCCCceEEEEEcCcchHHHHHHHHHcC
Q psy16024         61 DLWKLGRGNRKSGNGDGSHILSTFRRLLNPLQ--VVDLADKSPEEALQWVSLMPSSGQTLILAAGGDGTAAWILNTIHNM  138 (316)
Q Consensus        61 ~~~~~vivNp~sG~~~~~~~~~~~~~~l~~~~--v~~~~t~~~~~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l~~~  138 (316)
                      .++++||+||+||++++.+.++++++.|+..+  +....|+.++|+.++++++.+ ++|.||++|||||+|||+|++...
T Consensus         8 m~~~~vi~Np~sG~~~~~~~~~~i~~~l~~~~~~~~~~~t~~~~~a~~~~~~~~~-~~d~vv~~GGDGTl~~v~~~l~~~   86 (304)
T 3s40_A            8 FEKVLLIVNPKAGQGDLHTNLTKIVPPLAAAFPDLHILHTKEQGDATKYCQEFAS-KVDLIIVFGGDGTVFECTNGLAPL   86 (304)
T ss_dssp             CSSEEEEECTTCSSSCHHHHHHHHHHHHHHHCSEEEEEECCSTTHHHHHHHHHTT-TCSEEEEEECHHHHHHHHHHHTTC
T ss_pred             CCEEEEEECcccCCCchHHHHHHHHHHHHHcCCeEEEEEccCcchHHHHHHHhhc-CCCEEEEEccchHHHHHHHHHhhC
Confidence            35899999999999998888889988887653  334468889999999998865 589999999999999999999874


Q ss_pred             CCCCCCcEEEecCCCcchhhhhhCCCCCCCCCCCCHHHHHHHHHccCCcceeeEEEEEeechhhhhhcccceeEEEeeee
Q psy16024        139 KLDPAPSVGIIPLGTGNDLSRVLGWGKLYDRDTCSPFQILDNLTRSKVAHLDRWSVQIKSIRQLRLTRALKCRWMYNYLS  218 (316)
Q Consensus       139 ~~~~~~~lgiiP~GTgNd~Ar~lg~~~~~~~~~~~~~~~l~~l~~~~~~~~D~~~v~~~~~~~~~~~~~~~~~~f~n~~g  218 (316)
                        ..++|||+||+||+|||||+||++.       ++.++++.|.+++++++|+++++              +++|+|++|
T Consensus        87 --~~~~~l~iiP~Gt~N~~ar~lg~~~-------~~~~a~~~i~~g~~~~iDlg~v~--------------~~~F~~~~~  143 (304)
T 3s40_A           87 --EIRPTLAIIPGGTCNDFSRTLGVPQ-------NIAEAAKLITKEHVKPVDVAKAN--------------GQHFLNFWG  143 (304)
T ss_dssp             --SSCCEEEEEECSSCCHHHHHTTCCS-------SHHHHHHHHTTCCEEEEEEEEET--------------TEEESSEEE
T ss_pred             --CCCCcEEEecCCcHHHHHHHcCCCc-------cHHHHHHHHHhCCeEEEEEEEEC--------------CEEEEEEEe
Confidence              2368999999999999999999987       89999999999999999999995              479999999


Q ss_pred             eeeeeeeeccchhhhccccccccccccccchhhhhhhHHHhhccccCccccEEEEECCeeecCCCceeEEEEccccccCC
Q psy16024        219 IGVDAQVALDFHNTRESSLYIFSSRAFNKFLYLTFGTQQAMERGCRDLDQRIELYLDGERVDLPPIESVVVLNIPSWASG  298 (316)
Q Consensus       219 iG~dA~v~~~~~~~r~~~~~~~~~~~~g~~~Y~~~~~~~l~~~~~~~~~~~~~i~~dg~~~~~~~~~~~~v~N~~~~ggg  298 (316)
                      +||||+++.+++..+        ++.+|+++|++++++.+++++    ++++++++||++++. ++.+++|+|++|||||
T Consensus       144 ~G~da~v~~~~~~~~--------k~~~G~~~Y~~~~l~~l~~~~----~~~~~i~~dg~~~~~-~~~~v~v~N~~~~Ggg  210 (304)
T 3s40_A          144 IGLVSEVSNNIDAEE--------KAKLGKIGYYLSTIRTVKNAE----TFPVKITYDGQVYED-EAVLVMVGNGEYLGGI  210 (304)
T ss_dssp             EC--------------------------CHHHHTTTC------C----CEEEEEEETTEEEEE-EEEEEEEECSSEETTE
T ss_pred             ehHHHHHHHhcCHHH--------hhcCCchHHHHHHHHHHhhcC----CceEEEEECCEEEEe-EEEEEEEECCCcCCCC
Confidence            999999999876543        346899999999999998865    688999999998765 5788999999999999


Q ss_pred             CCCCCCCCCCCCCcccc
Q psy16024        299 VDLWKLGRGQKSPFTLT  315 (316)
Q Consensus       299 ~~~~p~a~~~DG~ldv~  315 (316)
                      +.++|.++++||+|||+
T Consensus       211 ~~~~p~a~~~DG~Ldv~  227 (304)
T 3s40_A          211 PSFIPNVKCDDGTLDIF  227 (304)
T ss_dssp             ECSSTTCCTTSSCEEEE
T ss_pred             cccCCCCcCCCCEEEEE
Confidence            99999999999999986

PyMOL of 3s40

>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A	Back alignment and structure

>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A	Back alignment and structure

>1yt5_A Inorganic polyphosphate/ATP-NAD kinase; domain 1: alpha/beta domain2: beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima}	Back alignment and structure

>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}	Back alignment and structure

>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A	Back alignment and structure

>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*	Back alignment and structure

>3afo_A NADH kinase POS5; alpha/beta+BETA sandwich, ATP-binding, mitochondrion NADP, nucleotide-binding, transferase, transit peptide; HET: NAI; 2.00A {Saccharomyces cerevisiae}	Back alignment and structure

>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*	Back alignment and structure

>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}	Back alignment and structure

>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}	Back alignment and structure

>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}	Back alignment and structure

>3iv7_A Alcohol dehydrogenase IV; NP_602249.1, iron-containing alcohol dehydrogenase, structur genomics, joint center for structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}	Back alignment and structure

>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*	Back alignment and structure

>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*	Back alignment and structure

>3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative alcohol dehedrogenase, structural GENO joint center for structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A {Ralstonia eutropha}	Back alignment and structure

>3hl0_A Maleylacetate reductase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens str}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		316
d2qv7a1		312	e.52.1.2 (A:1-312) Diacylglycerol kinase DgkB {Sta	5e-11
d2bona1		295	e.52.1.2 (A:5-299) Lipid kinase YegS {Escherichia	2e-09

>d2qv7a1 e.52.1.2 (A:1-312) Diacylglycerol kinase DgkB {Staphylococcus aureus [TaxId: 1280]} Length = 312	Back information, alignment and structure


class: Multi-domain proteins (alpha and beta)
fold: NAD kinase/diacylglycerol kinase-like
superfamily: NAD kinase/diacylglycerol kinase-like
family: Diacylglycerol kinase-like
domain: Diacylglycerol kinase DgkB
species: Staphylococcus aureus [TaxId: 1280]

 Score = 60.4 bits (145), Expect = 5e-11
 Identities = 33/167 (19%), Positives = 53/167 (31%), Gaps = 25/167 (14%)

Query: 69  NRKSGNGDGSHILSTFRRLLNP--LQVVDLADKSPEEALQWVSLMPSSGQTLILAAGGDG 126
           N  SG       L      L     +    A +   +A             +++AAGGDG
Sbjct: 10  NPTSGKEQFKRELPDALIKLEKAGYETSAYATEKIGDATLEAERAMHENYDVLIAAGGDG 69

Query: 127 TAAWILNTIHNMKLDPAPSVGIIPLGTGNDLSRVLGWGKLYDRDTCSPFQILDNLTRSKV 186
           T   ++N     +    P +G+IP+GT ND  R L                LD +     
Sbjct: 70  TLNEVVN--GIAEKPNRPKLGVIPMGTVNDFGRALHI-------PNDIMGALDVIIEGHS 120

Query: 187 AHLDRWSVQIKSIRQLRLTRALKCRWMYNYLSIGVDAQVALDFHNTR 233
             +D   +                R+  N  + G   QV+ +  +  
Sbjct: 121 TKVDIGKMN--------------NRYFINLAAGGQLTQVSYETPSKL 153

PyMOL of d2qv7a1

>d2bona1 e.52.1.2 (A:5-299) Lipid kinase YegS {Escherichia coli [TaxId: 562]} Length = 295	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		316
d2bona1		295	Lipid kinase YegS {Escherichia coli [TaxId: 562]}	100.0
d2qv7a1		312	Diacylglycerol kinase DgkB {Staphylococcus aureus	100.0
d1u0ta_		302	Inorganic polyphosphate/ATP-NAD kinase PpnK {Mycob	96.81
d1z0sa1		249	Inorganic polyphosphate/ATP-NAD kinase PpnK {Archa	94.65
d1qcza_		163	N5-CAIR mutase (phosphoribosylaminoimidazole carbo	90.92
d1u11a_		159	N5-CAIR mutase (phosphoribosylaminoimidazole carbo	90.88
d1xmpa_		155	N5-CAIR mutase (phosphoribosylaminoimidazole carbo	85.19
d1o4va_		169	N5-CAIR mutase (phosphoribosylaminoimidazole carbo	84.99
d1kq3a_		364	Glycerol dehydrogenase {Thermotoga maritima [TaxId	81.3

>d2bona1 e.52.1.2 (A:5-299) Lipid kinase YegS {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

class: Multi-domain proteins (alpha and beta)
fold: NAD kinase/diacylglycerol kinase-like
superfamily: NAD kinase/diacylglycerol kinase-like
family: Diacylglycerol kinase-like
domain: Lipid kinase YegS
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=4.9e-45  Score=327.45  Aligned_cols=218  Identities=19%  Similarity=0.156  Sum_probs=183.5

Q ss_pred             ccccccccCCCCCCCCcchHHHHHhhcCCc--eEEEcccCChHHHHHHHHhCCCCCceEEEEEcCcchHHHHHHHHHcCC
Q psy16024         62 LWKLGRGNRKSGNGDGSHILSTFRRLLNPL--QVVDLADKSPEEALQWVSLMPSSGQTLILAAGGDGTAAWILNTIHNMK  139 (316)
Q Consensus        62 ~~~~vivNp~sG~~~~~~~~~~~~~~l~~~--~v~~~~t~~~~~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l~~~~  139 (316)
                      ++.+||+||+||+++   .+.++.+.|++.  ++....|++++||.++++++..+++|.|+++|||||+|||+|+|.+++
T Consensus         1 p~~l~i~N~~s~~~~---~~~~~~~~l~~~g~~~~v~~T~~~g~a~~~~~~~~~~~~d~Ivv~GGDGTv~ev~~gl~~~~   77 (295)
T d2bona1           1 PASLLILNGKSTDNL---PLREAIMLLREEGMTIHVRVTWEKGDAARYVEEARKFGVATVIAGGGDGTINEVSTALIQCE   77 (295)
T ss_dssp             CCEEEEECSSSTTCH---HHHHHHHHHHTTTCCEEEEECCSTTHHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHHHCC
T ss_pred             CcEEEEECCCCCCch---HHHHHHHHHHHCCCEEEEEEcCCcchHHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHhcc
Confidence            367899999999754   345666777664  344557889999999999988878999999999999999999999876


Q ss_pred             CCCCCcEEEecCCCcchhhhhhCCCCCCCCCCCCHHHHHHHHHccCCcceeeEEEEEeechhhhhhcccceeEEEeeeee
Q psy16024        140 LDPAPSVGIIPLGTGNDLSRVLGWGKLYDRDTCSPFQILDNLTRSKVAHLDRWSVQIKSIRQLRLTRALKCRWMYNYLSI  219 (316)
Q Consensus       140 ~~~~~~lgiiP~GTgNd~Ar~lg~~~~~~~~~~~~~~~l~~l~~~~~~~~D~~~v~~~~~~~~~~~~~~~~~~f~n~~gi  219 (316)
                      ....++||+||+||||||||++|++.       ++.++++.+.+++++++|+++++             ..++|+|++|+
T Consensus        78 ~~~~p~lgilP~GTgN~~Ar~lg~~~-------~~~~a~~~i~~g~~~~id~~~v~-------------~~~~f~~~~~~  137 (295)
T d2bona1          78 GDDIPALGILPLGTANDFATSVGIPE-------ALDKALKLAIAGDAIAIDMAQVN-------------KQTCFINMATG  137 (295)
T ss_dssp             SSCCCEEEEEECSSSCHHHHHTTCCS-------SHHHHHHHHHHSEEEEEEEEEET-------------TSCEESSEEEE
T ss_pred             CCCCceEEEEECCcccchHHHcCCCc-------chhhhhhhhcccceEEeeeeeee-------------cceeeeeeeee
Confidence            44568899999999999999999986       89999999999999999999995             45799999999


Q ss_pred             eeeeeeeccchhhhccccccccccccccchhhhhhhHHHhhccccCccccEEEEECCeeecCCCceeEEEEccccccCCC
Q psy16024        220 GVDAQVALDFHNTRESSLYIFSSRAFNKFLYLTFGTQQAMERGCRDLDQRIELYLDGERVDLPPIESVVVLNIPSWASGV  299 (316)
Q Consensus       220 G~dA~v~~~~~~~r~~~~~~~~~~~~g~~~Y~~~~~~~l~~~~~~~~~~~~~i~~dg~~~~~~~~~~~~v~N~~~~ggg~  299 (316)
                      |++|+++.+++..+        ++++|+++|..++++.+++++    +++++++.|+++.+. +..+++++|+++||+|+
T Consensus       138 G~~a~v~~~~~~~~--------~~~~G~~~y~~~~~~~l~~~~----~~~~~i~~d~~~~~~-~~~~~~v~n~~~~g~g~  204 (295)
T d2bona1         138 GFGTRITTETPEKL--------KAALGSVSYIIHGLMRMDTLQ----PDRCEIRGENFHWQG-DALVIGIGNGRQAGGGQ  204 (295)
T ss_dssp             EEEEEC------------------CCHHHHHHHHHTSCEEEEE----CEEEEEEETTEEEEE-EESEEEEESSSCBTTTB
T ss_pred             cccHHHHHHHHHHh--------hccccchhhhhhhhhhhhccC----ceeEEEEeccccccc-ceeEEEecccccccCCc
Confidence            99999998765443        346899999999999988765    678999999998876 47789999999999999


Q ss_pred             CCCCCCCCCCCCcccc
Q psy16024        300 DLWKLGRGQKSPFTLT  315 (316)
Q Consensus       300 ~~~p~a~~~DG~ldv~  315 (316)
                      .++|.++++||.||++
T Consensus       205 ~i~P~a~~~dg~l~v~  220 (295)
T d2bona1         205 QLCPNALINDGLLQLR  220 (295)
T ss_dssp             CSCTTCCTTSSCEEEE
T ss_pred             ccCCCCCCCCCceEEE
Confidence            9999999999999986

PyMOL of d2bona1

>d2qv7a1 e.52.1.2 (A:1-312) Diacylglycerol kinase DgkB {Staphylococcus aureus [TaxId: 1280]}	Back information, alignment and structure

>d1u0ta_ e.52.1.1 (A:) Inorganic polyphosphate/ATP-NAD kinase PpnK {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d1z0sa1 e.52.1.1 (A:1-249) Inorganic polyphosphate/ATP-NAD kinase PpnK {Archaeoglobus fulgidus [TaxId: 2234]}	Back information, alignment and structure

>d1qcza_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1u11a_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Acetobacter aceti [TaxId: 435]}	Back information, alignment and structure

>d1xmpa_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Bacillus anthracis [TaxId: 1392]}	Back information, alignment and structure

>d1o4va_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1kq3a_ e.22.1.2 (A:) Glycerol dehydrogenase {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure