Psyllid ID: psy16075

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-
Protein Sequence
VPGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQRANMSVPRRGSYSRTSQLSSDSHQSTQSIATTNNSEDDEQDEVVDLTGITLEICRIEPSTNSDIFERTKIVFVFTMLSKTTKWMSDMNGHALRILARESLEELSNYASSRSKNIISTFLGGTPGKTKSHITISNPQDFRCGIKGGSTFNSHKLSNFFAKFGLNNGRTVPSGNKTWEHF
Secondary Structure (PSIPRED)
ccEEEEEEEccccHHHHccccccccEEEEEccEEcccccHHHHHHHHHHccccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccccccccccccEEEEEEcccccccccccEEEEEcccccccHHHHHHHHHHcccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
EEEEEEEEEccccHHHHHcccccccEEEEEccEEcccccHHHHHHHHHHHHHHEEEEEEcccccccccccccccccccccccccccccccccccccccccccHHcHHccccccccccccccccccccEEEEEEEEHHHHHcHccHHHHcccHHHHHHHHHHHHHHHcccccccccHHHEEEccccccccccEEEEEcccccEccccccccccccHHHHHHHHHcccccccccccccccccc
Coil and Loop (DISEMBL)
VPGIFIsrlvpgglaestgllavndevlEVNGILVAGKSLDQVTDMMVANSSNLiitvkpanqranmsvprrgsysrtsqlssdshqstqsiattnnseddeqdevvDLTGITleicriepstnsdiferTKIVFVFTMLSKTTKWMSDMNGHALRILARESLEELSNYASSRSKNIIStflggtpgktkshitisnpqdfrcgikggstfnshKLSNFFAKfglnngrtvpsgnktwehf
Flexible Loop (DISEMBL)
vpgifisrlvpgglaESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLiitvkpanqranmsvPRRGSYsrtsqlssdshqSTQSiattnnseddeqdeVVDLTGITLEicriepstnsdifertkIVFVFTMLSKTTKWMSDMNGHALRILARESLEELSNYASSRSKNIISTFlggtpgktksHITISNPQDFRCGIKGGSTFNSHKLSNFFAkfglnngrtvpsgnktwehf
Low Complexity Region (SEG)
VPGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQRANMSVPRRGSYSRTSQLSSDSHQSTQSIATTNNSEDDEQDEVVDLTGITLEICRIEPSTNSDIFERTKIVFVFTMLSKTTKWMSDMNGHALRILARESLEELSNYASSRSKNIISTFLGGTPGKTKSHITISNPQDFRCGIKGGSTFNSHKLSNFFAKFGLNNGRTVPSGNKTWEHF
Disordered region (IsUnstruct)
***IFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITV***********************************************VVDLTGITLEICRIEPSTNSDIFERTKIVFVFTMLSKTTKWMSDMNGHALRILARESL************NIISTFLGGT*****SHITISNPQDFRCGIKGGSTFNSHKLSNFFAKFGLN***************
Disordered Region (DISOPRED)
VPGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITV***************************************************************************VFVFTMLSKTTKWMSDMN******************************************************************************************
Disordered Region (DISEMBL)
VPGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQR****************************************EVVDLTGITLEICRIEPSTNSDIFERTKIVFVFTMLSKTTKWMSDMNGHALRILARESLEELSNYASSRSKNIISTFLGGTPGKTKSHITISNPQDFRCGIKGGSTFNSHKLSNFFAKFGLNNGRTVPSGNKTWEHF
Disordered Region (DISPRO)
VPGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPAN*****************************************DEVVDLTGITLEICRIEPSTNSDIFERTKIVFVFTMLSKTTKWMSDMNGHALRILARESLEELSNYASSRSKNIISTFLGGTPGKTKSHITISNPQDFRCGIKGGSTFNSHKLSNFFAKFGLNNG*************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
VPGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQRANMSVPRRGSYSRTSQLSSDSHQSTQSIATTNNSEDDEQDEVVDLTGITLEICRIEPSTNSDIFERTKIVFVFTMLSKTTKWMSDMNGHALRILARESLEELSNYASSRSKNIISTFLGGTPGKTKSHITISNPQDFRCGIKGGSTFNSHKLSNFFAKFGLNNGRTVPSGNKTWEHF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	241	2.2.26 [Sep-21-2011]
Q9JK84	382	Partitioning defective 6	yes	N/A	0.452	0.285	0.681	9e-32
Q9JK83	371	Partitioning defective 6	no	N/A	0.551	0.358	0.521	5e-28
Q9BYG5	372	Partitioning defective 6	yes	N/A	0.336	0.217	0.741	9e-28
Q9BYG4	376	Partitioning defective 6	no	N/A	0.278	0.178	0.880	2e-27
Q6B4M5	346	Partitioning defective 6	no	N/A	0.331	0.231	0.759	7e-26
Q9Z101	346	Partitioning defective 6	no	N/A	0.331	0.231	0.759	8e-26
Q9NPB6	346	Partitioning defective 6	no	N/A	0.278	0.193	0.865	9e-26
Q9NAN2	309	Partitioning defective pr	yes	N/A	0.282	0.220	0.838	1e-24
Q5RDQ2	675	MAGUK p55 subfamily membe	no	N/A	0.248	0.088	0.433	3e-07
Q8N3R9	675	MAGUK p55 subfamily membe	no	N/A	0.248	0.088	0.433	5e-07

>sp|Q9JK84|PAR6G_MOUSE Partitioning defective 6 homolog gamma OS=Mus musculus GN=Pard6g PE=2 SV=1

 Score =  137 bits (344), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 75/110 (68%), Positives = 82/110 (74%), Gaps = 1/110 (0%)

Query: 1   VPGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKP 60
           VPGIFISR+VPGGLAESTGLLAVNDEVLEVNGI VAGK+LDQVTDMM+ANS NLI+TVKP
Sbjct: 190 VPGIFISRMVPGGLAESTGLLAVNDEVLEVNGIEVAGKTLDQVTDMMIANSHNLIVTVKP 249

Query: 61  ANQRANMSVPRRGSYSRT-SQLSSDSHQSTQSIATTNNSEDDEQDEVVDL 109
           ANQR N+    R S S   S  S+ SH S        NSED E DE  D+
Sbjct: 250 ANQRNNVVRSSRTSGSSVHSTDSTTSHHSLPGAHVLQNSEDVESDEEADI 299

Adapter protein involved in asymmetrical cell division and cell polarization processes. May play a role in the formation of epithelial tight junctions. The PARD6-PARD3 complex links GTP-bound Rho small GTPases to atypical protein kinase C proteins.
Mus musculus (taxid: 10090)

>sp|Q9JK83|PAR6B_MOUSE Partitioning defective 6 homolog beta OS=Mus musculus GN=Pard6b PE=1 SV=2

 Score =  124 bits (311), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 73/140 (52%), Positives = 96/140 (68%), Gaps = 7/140 (5%)

Query: 1   VPGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKP 60
           VPGIFISRLVPGGLA+STGLLAVNDEVLEVNGI V+GKSLDQVTDMM+ANS NLIITV+P
Sbjct: 189 VPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRP 248

Query: 61  ANQRANMSVPRRGSYSRTSQLSSDSH-----QSTQSIATTNNSEDDEQDEVVDLTGITLE 115
           ANQR N  V R    S +S  S+D+      Q  ++     + + DE D +++ +G   +
Sbjct: 249 ANQRNN--VVRNSRTSGSSSQSTDNSLLGFPQQVEASFEPEDQDSDEDDIIIEDSGEPQQ 306

Query: 116 ICRIEPSTNSDIFERTKIVF 135
           I +  P+ + +   + ++ F
Sbjct: 307 IPKATPAQSLESLTQIELSF 326

Adapter protein involved in asymmetrical cell division and cell polarization processes. Probably involved in formation of epithelial tight junctions. Association with PARD3 may prevent the interaction of PARD3 with F11R/JAM1, thereby preventing tight junction assembly. The PARD6-PARD3 complex links GTP-bound Rho small GTPases to atypical protein kinase C proteins.

Mus musculus (taxid: 10090)

>sp|Q9BYG5|PAR6B_HUMAN Partitioning defective 6 homolog beta OS=Homo sapiens GN=PARD6B PE=1 SV=1

 Score =  123 bits (309), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 66/89 (74%), Positives = 72/89 (80%), Gaps = 8/89 (8%)

Query: 1   VPGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKP 60
           VPGIFISRLVPGGLA+STGLLAVNDEVLEVNGI V+GKSLDQVTDMM+ANS NLIITV+P
Sbjct: 189 VPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRP 248

Query: 61  ANQRANMSVPRRGSYSRTSQLSSDSHQST 89
           ANQR N+         R S+ S  S QST
Sbjct: 249 ANQRNNV--------VRNSRTSGSSGQST 269

Adapter protein involved in asymmetrical cell division and cell polarization processes. Probably involved in formation of epithelial tight junctions. Association with PARD3 may prevent the interaction of PARD3 with F11R/JAM1, thereby preventing tight junction assembly. The PARD6-PARD3 complex links GTP-bound Rho small GTPases to atypical protein kinase C proteins.

Homo sapiens (taxid: 9606)

>sp|Q9BYG4|PAR6G_HUMAN Partitioning defective 6 homolog gamma OS=Homo sapiens GN=PARD6G PE=1 SV=1

 Score =  122 bits (307), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 59/67 (88%), Positives = 64/67 (95%)

Query: 1   VPGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKP 60
           VPGIFISR+VPGGLAESTGLLAVNDEVLEVNGI VAGK+LDQVTDMM+ANS NLI+TVKP
Sbjct: 190 VPGIFISRMVPGGLAESTGLLAVNDEVLEVNGIEVAGKTLDQVTDMMIANSHNLIVTVKP 249

Query: 61  ANQRANM 67
           ANQR N+
Sbjct: 250 ANQRNNV 256

Adapter protein involved in asymmetrical cell division and cell polarization processes. May play a role in the formation of epithelial tight junctions. The PARD6-PARD3 complex links GTP-bound Rho small GTPases to atypical protein kinase C proteins.

Homo sapiens (taxid: 9606)

>sp|Q6B4M5|PAR6A_RAT Partitioning defective 6 homolog alpha OS=Rattus norvegicus GN=Pard6a PE=2 SV=2

 Score =  117 bits (293), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 63/83 (75%), Positives = 70/83 (84%), Gaps = 3/83 (3%)

Query: 1   VPGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKP 60
           VPGIFISRLV GGLAESTGLLAV+DE+LEVNGI VAGK+LDQVTDMMVANS NLI+TVKP
Sbjct: 189 VPGIFISRLVRGGLAESTGLLAVSDEILEVNGIEVAGKTLDQVTDMMVANSHNLIVTVKP 248

Query: 61  ANQRANMSVPRRGSYSRTSQLSS 83
           ANQR N+    RG+  R +  SS
Sbjct: 249 ANQRNNVV---RGASGRLTGPSS 268

Adapter protein involved in asymmetrical cell division and cell polarization processes. Probably involved in the formation of epithelial tight junctions. Association with PARD3 may prevent the interaction of PARD3 with F11R/JAM1, thereby preventing tight junction assembly. The PARD6-PARD3 complex links GTP-bound Rho small GTPases to atypical protein kinase C proteins.

Rattus norvegicus (taxid: 10116)

>sp|Q9Z101|PAR6A_MOUSE Partitioning defective 6 homolog alpha OS=Mus musculus GN=Pard6a PE=1 SV=2

 Score =  117 bits (293), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 63/83 (75%), Positives = 70/83 (84%), Gaps = 3/83 (3%)

Query: 1   VPGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKP 60
           VPGIFISRLV GGLAESTGLLAV+DE+LEVNGI VAGK+LDQVTDMMVANS NLI+TVKP
Sbjct: 189 VPGIFISRLVRGGLAESTGLLAVSDEILEVNGIEVAGKTLDQVTDMMVANSHNLIVTVKP 248

Query: 61  ANQRANMSVPRRGSYSRTSQLSS 83
           ANQR N+    RG+  R +  SS
Sbjct: 249 ANQRNNVV---RGASGRLTGPSS 268

Adapter protein involved in asymmetrical cell division and cell polarization processes. Probably involved in the formation of epithelial tight junctions. Association with PARD3 may prevent the interaction of PARD3 with F11R/JAM1, thereby preventing tight junction assembly. The PARD6-PARD3 complex links GTP-bound Rho small GTPases to atypical protein kinase C proteins.

Mus musculus (taxid: 10090)

>sp|Q9NPB6|PAR6A_HUMAN Partitioning defective 6 homolog alpha OS=Homo sapiens GN=PARD6A PE=1 SV=1

 Score =  117 bits (292), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 58/67 (86%), Positives = 63/67 (94%)

Query: 1   VPGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKP 60
           VPGIFISRLV GGLAESTGLLAV+DE+LEVNGI VAGK+LDQVTDMMVANS NLI+TVKP
Sbjct: 189 VPGIFISRLVRGGLAESTGLLAVSDEILEVNGIEVAGKTLDQVTDMMVANSHNLIVTVKP 248

Query: 61  ANQRANM 67
           ANQR N+
Sbjct: 249 ANQRNNV 255

Adapter protein involved in asymmetrical cell division and cell polarization processes. Probably involved in the formation of epithelial tight junctions. Association with PARD3 may prevent the interaction of PARD3 with F11R/JAM1, thereby preventing tight junction assembly. The PARD6-PARD3 complex links GTP-bound Rho small GTPases to atypical protein kinase C proteins.

Homo sapiens (taxid: 9606)

>sp|Q9NAN2|PAR6_CAEEL Partitioning defective protein 6 OS=Caenorhabditis elegans GN=par-6 PE=1 SV=2

 Score =  113 bits (282), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 57/68 (83%), Positives = 60/68 (88%)

Query: 1   VPGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKP 60
           V GIFISRLV GGLAESTGLL VNDEVLEVNGI V GK+LDQVTDMMVAN+ NLIITVKP
Sbjct: 188 VSGIFISRLVDGGLAESTGLLGVNDEVLEVNGIEVLGKTLDQVTDMMVANAHNLIITVKP 247

Query: 61  ANQRANMS 68
           ANQR  +S
Sbjct: 248 ANQRNTLS 255

Necessary for apicobasal and anterior-posterior asymmetries associated with cell adhesion and gastrulation during the first few cell cycles of embryogenesis. Required for localizing/ maintaining par-3 at the cell periphery. Acts together with par-3 and pkc-3 in maintaining epithelial cell polarity in the distal spermatheca.

Caenorhabditis elegans (taxid: 6239)

>sp|Q5RDQ2|MPP5_PONAB MAGUK p55 subfamily member 5 OS=Pongo abelii GN=MPP5 PE=2 SV=1

 Score = 55.8 bits (133), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 38/60 (63%)

Query: 4   IFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQ 63
           + ISR+V GG AE +GLL   DEVLE+NGI + GK +++V D++      L   + P+ Q
Sbjct: 278 VIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLADMHGTLTFVLIPSQQ 337

May play a role in tight junctions biogenesis and in the establishment of cell polarity in epithelial cells. May modulate SC6A1/GAT1-mediated GABA uptake by stabilizing the transporter. Required for localization of EZR to the apical membrane of parietal cells and may play a role in the dynamic remodeling of the apical cytoskeleton.

Pongo abelii (taxid: 9601)

>sp|Q8N3R9|MPP5_HUMAN MAGUK p55 subfamily member 5 OS=Homo sapiens GN=MPP5 PE=1 SV=3

 Score = 55.1 bits (131), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 38/60 (63%)

Query: 4   IFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQ 63
           + ISR+V GG AE +GLL   DEVLE+NGI + GK +++V D++      L   + P+ Q
Sbjct: 278 VIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMHGTLTFVLIPSQQ 337

May play a role in tight junctions biogenesis and in the establishment of cell polarity in epithelial cells. May modulate SC6A1/GAT1-mediated GABA uptake by stabilizing the transporter. Required for localization of EZR to the apical membrane of parietal cells and may play a role in the dynamic remodeling of the apical cytoskeleton.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	241
383862355	333	PREDICTED: partitioning defective 6 homo	0.464	0.336	0.8	4e-44
380016890	335	PREDICTED: partitioning defective 6 homo	0.464	0.334	0.8	4e-44
340714778	335	PREDICTED: partitioning defective 6 homo	0.464	0.334	0.8	4e-44
328791906	334	PREDICTED: partitioning defective 6 homo	0.464	0.335	0.8	5e-44
307177676	327	Partitioning defective 6-like protein ga	0.456	0.336	0.782	4e-43
332024170	325	Partitioning defective 6-like protein ga	0.456	0.338	0.782	5e-43
307194738	333	Partitioning defective 6-like protein be	0.456	0.330	0.773	3e-42
322800469	324	hypothetical protein SINV_12179 [Solenop	0.456	0.339	0.773	5e-42
289742303	333	cell polarity protein PAR6 [Glossina mor	0.464	0.336	0.771	9e-41
193666982	309	PREDICTED: partitioning defective protei	0.485	0.378	0.806	3e-39

>gi|383862355|ref|XP_003706649.1| PREDICTED: partitioning defective 6 homolog gamma-like [Megachile rotundata]

 Score =  184 bits (466), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 92/115 (80%), Positives = 103/115 (89%), Gaps = 3/115 (2%)

Query: 1   VPGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKP 60
           VPG+FISRLVPGGLAESTGLLAVNDEVLEVNGI VAGK+LDQVTDMM+ANSSNLIITVKP
Sbjct: 191 VPGVFISRLVPGGLAESTGLLAVNDEVLEVNGIEVAGKTLDQVTDMMIANSSNLIITVKP 250

Query: 61  ANQRANMSVPRRGSYSRTSQLSSDSHQSTQSIATTNNSEDDEQDEVVDLTGITLE 115
           ANQRA ++ PRRGS+SR SQLSS SHQSTQS AT     D++ DE+VDLTG+TL+
Sbjct: 251 ANQRAALAAPRRGSFSRNSQLSSGSHQSTQSAAT---GSDEDADEIVDLTGVTLQ 302

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380016890|ref|XP_003692403.1| PREDICTED: partitioning defective 6 homolog gamma-like [Apis florea]

 Score =  184 bits (466), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 92/115 (80%), Positives = 103/115 (89%), Gaps = 3/115 (2%)

Query: 1   VPGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKP 60
           VPG+FISRLVPGGLAESTGLLAVNDEVLEVNGI VAGK+LDQVTDMM+ANSSNLIITVKP
Sbjct: 191 VPGVFISRLVPGGLAESTGLLAVNDEVLEVNGIEVAGKTLDQVTDMMIANSSNLIITVKP 250

Query: 61  ANQRANMSVPRRGSYSRTSQLSSDSHQSTQSIATTNNSEDDEQDEVVDLTGITLE 115
           ANQRA ++ PRRGS+SR SQLSS SHQSTQS AT     D++ DE+VDLTG+TL+
Sbjct: 251 ANQRAALAAPRRGSFSRNSQLSSGSHQSTQSAAT---GSDEDADEIVDLTGVTLQ 302

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340714778|ref|XP_003395901.1| PREDICTED: partitioning defective 6 homolog gamma-like [Bombus terrestris] gi|350415064|ref|XP_003490521.1| PREDICTED: partitioning defective 6 homolog gamma-like [Bombus impatiens]

 Score =  183 bits (465), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 92/115 (80%), Positives = 103/115 (89%), Gaps = 3/115 (2%)

Query: 1   VPGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKP 60
           VPG+FISRLVPGGLAESTGLLAVNDEVLEVNGI VAGK+LDQVTDMM+ANSSNLIITVKP
Sbjct: 191 VPGVFISRLVPGGLAESTGLLAVNDEVLEVNGIEVAGKTLDQVTDMMIANSSNLIITVKP 250

Query: 61  ANQRANMSVPRRGSYSRTSQLSSDSHQSTQSIATTNNSEDDEQDEVVDLTGITLE 115
           ANQRA ++ PRRGS+SR SQLSS SHQSTQS AT     D++ DE+VDLTG+TL+
Sbjct: 251 ANQRAALAAPRRGSFSRNSQLSSGSHQSTQSAAT---GSDEDADEIVDLTGVTLQ 302

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328791906|ref|XP_001120877.2| PREDICTED: partitioning defective 6 homolog gamma [Apis mellifera]

 Score =  183 bits (465), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 92/115 (80%), Positives = 103/115 (89%), Gaps = 3/115 (2%)

Query: 1   VPGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKP 60
           VPG+FISRLVPGGLAESTGLLAVNDEVLEVNGI VAGK+LDQVTDMM+ANSSNLIITVKP
Sbjct: 191 VPGVFISRLVPGGLAESTGLLAVNDEVLEVNGIEVAGKTLDQVTDMMIANSSNLIITVKP 250

Query: 61  ANQRANMSVPRRGSYSRTSQLSSDSHQSTQSIATTNNSEDDEQDEVVDLTGITLE 115
           ANQRA ++ PRRGS+SR SQLSS SHQSTQS AT     D++ DE+VDLTG+TL+
Sbjct: 251 ANQRAALTAPRRGSFSRNSQLSSGSHQSTQSAAT---GSDEDADEIVDLTGVTLQ 302

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307177676|gb|EFN66722.1| Partitioning defective 6-like protein gamma [Camponotus floridanus]

 Score =  180 bits (457), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 90/115 (78%), Positives = 102/115 (88%), Gaps = 5/115 (4%)

Query: 1   VPGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKP 60
           VPG+FISRLVPGGLAESTGLLAVNDEVLEVNGI VAGK+LDQVTDMM+ANSSNLIITVKP
Sbjct: 187 VPGVFISRLVPGGLAESTGLLAVNDEVLEVNGIEVAGKTLDQVTDMMIANSSNLIITVKP 246

Query: 61  ANQRANMSVPRRGSYSRTSQLSSDSHQSTQSIATTNNSEDDEQDEVVDLTGITLE 115
           ANQRA ++ PRRGS+SR SQLSS SHQSTQS  +     D+E DE+VDLTG+T++
Sbjct: 247 ANQRAALAAPRRGSFSRNSQLSSGSHQSTQSAGS-----DEEADEIVDLTGLTIQ 296

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332024170|gb|EGI64385.1| Partitioning defective 6-like protein gamma [Acromyrmex echinatior]

 Score =  180 bits (456), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 90/115 (78%), Positives = 102/115 (88%), Gaps = 5/115 (4%)

Query: 1   VPGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKP 60
           VPG+FISRLVPGGLAESTGLLAVNDEVLEVNGI VAGK+LDQVTDMM+ANSSNLIITVKP
Sbjct: 187 VPGVFISRLVPGGLAESTGLLAVNDEVLEVNGIEVAGKTLDQVTDMMIANSSNLIITVKP 246

Query: 61  ANQRANMSVPRRGSYSRTSQLSSDSHQSTQSIATTNNSEDDEQDEVVDLTGITLE 115
           ANQRA ++ PRRGS+SR SQLSS SHQSTQS  +     D+E DE+VDLTG+T++
Sbjct: 247 ANQRAALTAPRRGSFSRNSQLSSGSHQSTQSAGS-----DEEADEIVDLTGMTMQ 296

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307194738|gb|EFN76972.1| Partitioning defective 6-like protein beta [Harpegnathos saltator]

 Score =  177 bits (449), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 89/115 (77%), Positives = 101/115 (87%), Gaps = 5/115 (4%)

Query: 1   VPGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKP 60
           VPG+FISRLVPGGLAESTGLLAVNDEVLEVNGI VAGK+LDQVTDMM+ANSSNLIITVKP
Sbjct: 189 VPGVFISRLVPGGLAESTGLLAVNDEVLEVNGIEVAGKTLDQVTDMMIANSSNLIITVKP 248

Query: 61  ANQRANMSVPRRGSYSRTSQLSSDSHQSTQSIATTNNSEDDEQDEVVDLTGITLE 115
           ANQRA ++ PRRGS+SR SQLSS S QSTQS  +     D+E DE+VDLTG+T++
Sbjct: 249 ANQRAALAAPRRGSFSRNSQLSSGSRQSTQSAGS-----DEEADEIVDLTGLTMQ 298

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322800469|gb|EFZ21473.1| hypothetical protein SINV_12179 [Solenopsis invicta]

 Score =  177 bits (448), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 89/115 (77%), Positives = 101/115 (87%), Gaps = 5/115 (4%)

Query: 1   VPGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKP 60
           VPG+FISRLVPGGLAESTGLLAVNDEVLEVNGI VAGK+LDQVTDMM+ANSSNLIITVKP
Sbjct: 188 VPGVFISRLVPGGLAESTGLLAVNDEVLEVNGIEVAGKTLDQVTDMMIANSSNLIITVKP 247

Query: 61  ANQRANMSVPRRGSYSRTSQLSSDSHQSTQSIATTNNSEDDEQDEVVDLTGITLE 115
           ANQRA ++ PRRGS+SR SQLSS S QSTQS  +     D+E DE+VDLTG+T++
Sbjct: 248 ANQRAALTAPRRGSFSRNSQLSSGSRQSTQSAGS-----DEEADEIVDLTGMTMQ 297

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|289742303|gb|ADD19899.1| cell polarity protein PAR6 [Glossina morsitans morsitans]

 Score =  172 bits (437), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 88/114 (77%), Positives = 101/114 (88%), Gaps = 2/114 (1%)

Query: 2   PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61
           PGIFISRLVPGGLAESTGLLAVNDEV+EVNGI VAGK+LDQVTDMMVANSSNLIIT KPA
Sbjct: 188 PGIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQVTDMMVANSSNLIITFKPA 247

Query: 62  NQRANMSVPRRGSYSRTSQLSSDSHQSTQSIATTNNSEDDEQDEVVDLTGITLE 115
           NQR  ++ PRRGS+SRTSQLSS SHQ+  +  T++  E DEQDE++DLTG+TL+
Sbjct: 248 NQRT-LTSPRRGSFSRTSQLSSGSHQTNHT-NTSDELEQDEQDEILDLTGVTLD 299

Source: Glossina morsitans morsitans

Species: Glossina morsitans

Genus: Glossina

Family: Glossinidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193666982|ref|XP_001949198.1| PREDICTED: partitioning defective protein 6-like [Acyrthosiphon pisum]

 Score =  167 bits (424), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 96/119 (80%), Positives = 103/119 (86%), Gaps = 2/119 (1%)

Query: 1   VPGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKP 60
           VPGIFISRLVPGGLAESTGLLAVNDEVLEVNGI VAGK+LDQVTDMMVANS NLI+TVKP
Sbjct: 182 VPGIFISRLVPGGLAESTGLLAVNDEVLEVNGIEVAGKTLDQVTDMMVANSHNLIVTVKP 241

Query: 61  ANQRANMSVPRRGSYSRTSQLSSDSHQSTQSIATT-NNSEDDEQDEVVDLT-GITLEIC 117
           ANQR  MS PRRGS SRTSQLSS S QS  S ATT N SE+D+QDEVVDLT G+ L++ 
Sbjct: 242 ANQRTTMSAPRRGSLSRTSQLSSGSQQSAHSAATTVNTSEEDDQDEVVDLTAGLALQVA 300

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	241
FB|FBgn0026192	351	par-6 "par-6" [Drosophila mela	0.464	0.319	0.754	3.4e-38
MGI|MGI:2135606	382	Pard6g "par-6 partitioning def	0.452	0.285	0.681	8.8e-31
RGD|1305016	382	Pard6g "par-6 partitioning def	0.452	0.285	0.663	1.4e-30
UNIPROTKB|Q9IAS9	377	pard6b "PAR-6" [Xenopus laevis	0.518	0.331	0.575	1.3e-29
UNIPROTKB|Q0PVE4	370	PARD6B "PAR6B" [Gallus gallus	0.510	0.332	0.579	1.6e-29
UNIPROTKB|G5E5R6	373	PARD6B "Uncharacterized protei	0.518	0.335	0.589	1.6e-29
UNIPROTKB|Q9BYG5	372	PARD6B "Partitioning defective	0.510	0.330	0.576	3.4e-29
MGI|MGI:2135605	371	Pard6b "par-6 (partitioning de	0.551	0.358	0.521	5.6e-29
UNIPROTKB|A5GHK8	372	PARD6B "Par-6 partitioning def	0.510	0.330	0.561	3.1e-28
UNIPROTKB|F1P0U8	304	F1P0U8 "Uncharacterized protei	0.443	0.351	0.681	5e-28

FB|FBgn0026192 par-6 "par-6" [Drosophila melanogaster (taxid:7227)]

 Score = 409 (149.0 bits), Expect = 3.4e-38, P = 3.4e-38
 Identities = 86/114 (75%), Positives = 97/114 (85%)

Query:     2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61
             PGIFISRLVPGGLAESTGLLAVNDEV+EVNGI VAGK+LDQVTDMMVANSSNLIITVKPA
Sbjct:   193 PGIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQVTDMMVANSSNLIITVKPA 252

Query:    62 NQRANMSVPRRGSYSRTSQLSSDSHQSTQSIATTNNSEDDEQDEVVDLTGITLE 115
             NQR   S   RGS+SR SQLSS SH  T +  T++  E D+QD++VDLTG+TL+
Sbjct:   253 NQRTLTST-HRGSFSRNSQLSSGSHH-TNNTNTSDEIEHDDQDDIVDLTGVTLD 304

GO:0045186 "zonula adherens assembly" evidence=NAS;TAS

GO:0045179 "apical cortex" evidence=IDA;NAS

GO:0016332 "establishment or maintenance of polarity of embryonic epithelium" evidence=NAS

GO:0045196 "establishment or maintenance of neuroblast polarity" evidence=NAS

GO:0045197 "establishment or maintenance of epithelial cell apical/basal polarity" evidence=NAS;TAS

GO:0007298 "border follicle cell migration" evidence=IMP

GO:0035003 "subapical complex" evidence=TAS

GO:0045176 "apical protein localization" evidence=NAS

GO:0007309 "oocyte axis specification" evidence=TAS

GO:0001738 "morphogenesis of a polarized epithelium" evidence=TAS

GO:0016324 "apical plasma membrane" evidence=TAS

GO:0008360 "regulation of cell shape" evidence=IMP

GO:0007155 "cell adhesion" evidence=IMP

GO:0005938 "cell cortex" evidence=TAS

GO:0007416 "synapse assembly" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0006911 "phagocytosis, engulfment" evidence=IMP

GO:0045200 "establishment of neuroblast polarity" evidence=IMP

GO:0006469 "negative regulation of protein kinase activity" evidence=IDA

GO:0055059 "asymmetric neuroblast division" evidence=IGI

GO:0051491 "positive regulation of filopodium assembly" evidence=IMP

GO:0010592 "positive regulation of lamellipodium assembly" evidence=IMP

GO:0060446 "branching involved in open tracheal system development" evidence=IMP

MGI|MGI:2135606 Pard6g "par-6 partitioning defective 6 homolog gamma (C. elegans)" [Mus musculus (taxid:10090)]

 Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
 Identities = 75/110 (68%), Positives = 82/110 (74%)

Query:     1 VPGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKP 60
             VPGIFISR+VPGGLAESTGLLAVNDEVLEVNGI VAGK+LDQVTDMM+ANS NLI+TVKP
Sbjct:   190 VPGIFISRMVPGGLAESTGLLAVNDEVLEVNGIEVAGKTLDQVTDMMIANSHNLIVTVKP 249

Query:    61 ANQRANMSVPRRGSYSRT-SQLSSDSHQSTQSIATTNNSEDDEQDEVVDL 109
             ANQR N+    R S S   S  S+ SH S        NSED E DE  D+
Sbjct:   250 ANQRNNVVRSSRTSGSSVHSTDSTTSHHSLPGAHVLQNSEDVESDEEADI 299

GO:0005737 "cytoplasm" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005923 "tight junction" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0043234 "protein complex" evidence=ISO

GO:0051301 "cell division" evidence=IEA

RGD|1305016 Pard6g "par-6 partitioning defective 6 homolog gamma (C. elegans)" [Rattus norvegicus (taxid:10116)]

 Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
 Identities = 73/110 (66%), Positives = 81/110 (73%)

Query:     1 VPGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKP 60
             VPGIFISR+VPGGLAESTGLLAVNDEVLEVNGI VAGK+LDQVTDMM+ANS NLI+TVKP
Sbjct:   190 VPGIFISRMVPGGLAESTGLLAVNDEVLEVNGIEVAGKTLDQVTDMMIANSHNLIVTVKP 249

Query:    61 ANQRANMSVPRRGSYSRTSQL-SSDSHQSTQSIATTNNSEDDEQDEVVDL 109
             ANQR N+    R S S      S+ SH S        NSE+ E DE  D+
Sbjct:   250 ANQRNNVVRSSRASGSSVQSTDSTTSHHSLPGTHALQNSEEMESDEEADI 299

GO:0043234 "protein complex" evidence=IDA

UNIPROTKB|Q9IAS9 pard6b "PAR-6" [Xenopus laevis (taxid:8355)]

 Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
 Identities = 76/132 (57%), Positives = 91/132 (68%)

Query:     1 VPGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKP 60
             VPGIFISRLVP GLA+STGLLAVNDEVLEVNGI V+GKSLDQVTDMM+ANS NLIITV+P
Sbjct:   190 VPGIFISRLVPSGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSHNLIITVRP 249

Query:    61 ANQRANMSVPRRGS----YSRTSQLSSDSHQSTQSIATT---NNSEDDEQDEVVDLTGIT 113
             ANQR N+    R S     S  S  S  SH + Q I       ++E DE+D +++  G  
Sbjct:   250 ANQRNNIVRNSRNSGSSGQSTDSSTSVQSHVTPQQIVQNYLPEDAESDEEDIIIEENGDP 309

Query:   114 LEICRIEPSTNS 125
              +I +  PS+ S
Sbjct:   310 QQIPKAIPSSES 321

GO:0005886 "plasma membrane" evidence=ISS

GO:0005923 "tight junction" evidence=ISS

GO:0006461 "protein complex assembly" evidence=ISS

UNIPROTKB|Q0PVE4 PARD6B "PAR6B" [Gallus gallus (taxid:9031)]

 Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
 Identities = 73/126 (57%), Positives = 88/126 (69%)

Query:     1 VPGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKP 60
             VPGIFISRLVPGGLA+STGLLAVNDEVLEVNGI V+GKSLDQVTDMM+ANS NLIITV+P
Sbjct:   189 VPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRP 248

Query:    61 ANQRANMSVPRRGSYSRTSQLSSDSHQSTQSIATT---NNSEDDEQDEVVDLTGITLEIC 117
             ANQR N+    R S S      S    ST +I         E DE+D +++ +G   +I 
Sbjct:   249 ANQRNNVVRNSRNSGSSGQSTESSLPSSTPNILANFLQGEEESDEEDIIIEDSGEPQQIP 308

Query:   118 RIEPST 123
             +  P++
Sbjct:   309 KATPAS 314

GO:0005634 "nucleus" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005923 "tight junction" evidence=IEA

GO:0005938 "cell cortex" evidence=IEA

GO:0006461 "protein complex assembly" evidence=IEA

GO:0045177 "apical part of cell" evidence=IEA

UNIPROTKB|G5E5R6 PARD6B "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
 Identities = 76/129 (58%), Positives = 91/129 (70%)

Query:     1 VPGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKP 60
             VPGIFISRLVPGGLA+STGLLAVNDEVLEVNGI V+GKSLDQVTDMM+ANS NLIITV+P
Sbjct:   189 VPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRP 248

Query:    61 ANQRANMSVPRR--GS--YSRTSQLSSDSHQSTQSIATTNNSEDDEQDEVVDLTGITLEI 116
             ANQR N+    R  GS   S  + L S +     S+    +  DD++D V++ +G   +I
Sbjct:   249 ANQRNNVVRNSRTSGSSGQSTDTSLPSCAPPPEPSLEPGEDDSDDDEDIVIEDSGEPRQI 308

Query:   117 CRIEPSTNS 125
              R  PS  S
Sbjct:   309 PRAAPSAES 317

GO:0045177 "apical part of cell" evidence=IEA

GO:0006461 "protein complex assembly" evidence=IEA

GO:0005938 "cell cortex" evidence=IEA

GO:0005923 "tight junction" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q9BYG5 PARD6B "Partitioning defective 6 homolog beta" [Homo sapiens (taxid:9606)]

 Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
 Identities = 75/130 (57%), Positives = 93/130 (71%)

Query:     1 VPGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKP 60
             VPGIFISRLVPGGLA+STGLLAVNDEVLEVNGI V+GKSLDQVTDMM+ANS NLIITV+P
Sbjct:   189 VPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRP 248

Query:    61 ANQRANMSVPRRGSYSRTSQLSSDSHQS--TQSIATTNNSEDDEQDE---VVDLTGITLE 115
             ANQR N  V R    S +S  S+D+      Q I  +   ED++ +E   +++  G+  +
Sbjct:   249 ANQRNN--VVRNSRTSGSSGQSTDNSLLGYPQQIEPSFEPEDEDSEEDDIIIEDNGVPQQ 306

Query:   116 ICRIEPSTNS 125
             I +  P+T S
Sbjct:   307 IPKAVPNTES 316

GO:0007049 "cell cycle" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005938 "cell cortex" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

GO:0045177 "apical part of cell" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA;TAS

GO:0006461 "protein complex assembly" evidence=IDA

GO:0005923 "tight junction" evidence=IDA

GO:0007043 "cell-cell junction assembly" evidence=TAS

GO:0030334 "regulation of cell migration" evidence=TAS

GO:0007163 "establishment or maintenance of cell polarity" evidence=TAS

GO:0007409 "axonogenesis" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0034329 "cell junction assembly" evidence=TAS

GO:0045216 "cell-cell junction organization" evidence=TAS

GO:0070830 "tight junction assembly" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

MGI|MGI:2135605 Pard6b "par-6 (partitioning defective 6) homolog beta (C. elegans)" [Mus musculus (taxid:10090)]

 Score = 322 (118.4 bits), Expect = 5.6e-29, P = 5.6e-29
 Identities = 73/140 (52%), Positives = 96/140 (68%)

Query:     1 VPGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKP 60
             VPGIFISRLVPGGLA+STGLLAVNDEVLEVNGI V+GKSLDQVTDMM+ANS NLIITV+P
Sbjct:   189 VPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRP 248

Query:    61 ANQRANMSVPRRGSYSRTSQLSSDSH-----QSTQSIATTNNSEDDEQDEVVDLTGITLE 115
             ANQR N  V R    S +S  S+D+      Q  ++     + + DE D +++ +G   +
Sbjct:   249 ANQRNN--VVRNSRTSGSSSQSTDNSLLGFPQQVEASFEPEDQDSDEDDIIIEDSGEPQQ 306

Query:   116 ICRIEPSTNSDIFERTKIVF 135
             I +  P+ + +   + ++ F
Sbjct:   307 IPKATPAQSLESLTQIELSF 326

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISO

GO:0005923 "tight junction" evidence=ISO;IDA

GO:0005938 "cell cortex" evidence=IDA

GO:0006461 "protein complex assembly" evidence=ISO

GO:0007049 "cell cycle" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0043234 "protein complex" evidence=ISO

GO:0045177 "apical part of cell" evidence=IDA

GO:0051301 "cell division" evidence=IEA

UNIPROTKB|A5GHK8 PARD6B "Par-6 partitioning defective 6 homolog beta (C. elegans)" [Sus scrofa (taxid:9823)]

 Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
 Identities = 73/130 (56%), Positives = 93/130 (71%)

Query:     1 VPGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKP 60
             VPGIFISRLVPGGLA+STGLLAVNDEVLEVNGI V+GKSLDQVTDMM+ANS NLIITV+P
Sbjct:   189 VPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRP 248

Query:    61 ANQRANMSVPRRGSYSRTSQLSSDSHQS--TQSIATTNNSEDDEQDE---VVDLTGITLE 115
             ANQR N  V R    S +S  S+D+      Q +  +   ED++ D+   +++ +G+  +
Sbjct:   249 ANQRNN--VIRNSRTSGSSGQSTDNSLLGYPQQVEPSFEPEDEDSDDDDIIIEDSGVPQQ 306

Query:   116 ICRIEPSTNS 125
             I +   +T S
Sbjct:   307 IPKAVRNTES 316

GO:0045177 "apical part of cell" evidence=IEA

GO:0006461 "protein complex assembly" evidence=IEA

GO:0005938 "cell cortex" evidence=IEA

GO:0005923 "tight junction" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|F1P0U8 F1P0U8 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
 Identities = 77/113 (68%), Positives = 84/113 (74%)

Query:     1 VPGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKP 60
             VPGIFISRLV GGLAESTGLLAV+DE+LEVNGI VAGKSLDQVTDMMVANS NLIITVKP
Sbjct:   191 VPGIFISRLVKGGLAESTGLLAVSDEILEVNGIDVAGKSLDQVTDMMVANSHNLIITVKP 250

Query:    61 ANQRANMSVPRRGSYSRTSQLSSDS--HQSTQSIATT--NNSEDDEQDEVVDL 109
             ANQR N  V R    S +S +S+DS   Q T S A+   +N    E DE  DL
Sbjct:   251 ANQRNN--VIRSSKASGSSGVSTDSTPSQQTPSPASQYLSNYSTAESDEEGDL 301

GO:0005080 "protein kinase C binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005923 "tight junction" evidence=IEA

GO:0005938 "cell cortex" evidence=IEA

GO:0017048 "Rho GTPase binding" evidence=IEA

GO:0030742 "GTP-dependent protein binding" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

GO:0045177 "apical part of cell" evidence=IEA

GO:0045217 "cell-cell junction maintenance" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9JK84	PAR6G_MOUSE	No assigned EC number	0.6818	0.4522	0.2853	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	241
cd00992	82	cd00992, PDZ_signaling, PDZ domain found in a vari	5e-13
smart00228	85	smart00228, PDZ, Domain present in PSD-95, Dlg, an	6e-10
pfam00595	80	pfam00595, PDZ, PDZ domain (Also known as DHR or G	2e-06
cd00988	85	cd00988, PDZ_CTP_protease, PDZ domain of C-termina	2e-04
cd00136	70	cd00136, PDZ, PDZ domain, also called DHR (Dlg hom	2e-04
COG0793	406	COG0793, Prc, Periplasmic protease [Cell envelope	0.003

>gnl|CDD|238492 cd00992, PDZ_signaling, PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements

 Score = 62.2 bits (152), Expect = 5e-13
 Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 1/58 (1%)

Query: 2  PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
           GIF+SR+ PGG AE  GL  V D +LEVNG+ V G + ++  +++  +   + +TV+
Sbjct: 26 GGIFVSRVEPGGPAERGGLR-VGDRILEVNGVSVEGLTHEEAVELLKNSGDEVTLTVR 82

May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases. Length = 82

>gnl|CDD|214570 smart00228, PDZ, Domain present in PSD-95, Dlg, and ZO-1/2

 Score = 53.9 bits (130), Expect = 6e-10
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 1/59 (1%)

Query: 2  PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKP 60
           G+ +S +VPG  A   GL  V D +LEVNG  V G +  +  D++      + +TV  
Sbjct: 26 GGVVVSSVVPGSPAAKAGLR-VGDVILEVNGTSVEGLTHLEAVDLLKKAGGKVTLTVLR 83

Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities. Length = 85

>gnl|CDD|201332 pfam00595, PDZ, PDZ domain (Also known as DHR or GLGF)

 Score = 44.2 bits (105), Expect = 2e-06
 Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 1/59 (1%)

Query: 1  VPGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
           PGIF+S ++PGG AE+ GL    D +L +NG  +   S D+    +  +   + +T+ 
Sbjct: 23 DPGIFVSEVLPGGAAEAGGL-QEGDRILSINGQDLENLSHDEAVLALKGSGGEVTLTIL 80

PDZ domains are found in diverse signaling proteins. Length = 80

>gnl|CDD|238488 cd00988, PDZ_CTP_protease, PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts

 Score = 39.1 bits (92), Expect = 2e-04
 Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 4/61 (6%)

Query: 3  GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMV--ANSSNLIITVKP 60
          G+ I+ ++PG  A   G+ A  D ++ ++G  V G SL+ V  ++   A +  + +T+K 
Sbjct: 14 GLVITSVLPGSPAAKAGIKA-GDIIVAIDGEPVDGLSLEDVVKLLRGKAGTK-VRLTLKR 71

Query: 61 A 61
           
Sbjct: 72 G 72

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins. Length = 85

>gnl|CDD|238080 cd00136, PDZ, PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif)

 Score = 38.4 bits (90), Expect = 2e-04
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 2/58 (3%)

Query: 2  PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
           G+ +  + PG  AE  GL    D +L VNG  V   +L+ V +++        +T+ 
Sbjct: 13 GGVVVLSVEPGSPAERAGLQ-AGDVILAVNGTDVKNLTLEDVAELL-KKEVGEKVTLT 68

Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(post synaptic density protein), DlgA (Drosophila disc large tumor suppressor), and ZO1, a mammalian tight junction protein. Length = 70

>gnl|CDD|223864 COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane]

 Score = 37.7 bits (88), Expect = 0.003
 Identities = 11/45 (24%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 3   GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMM 47
           G+ +   + G  A   G+    D +++++G  V G SLD+   ++
Sbjct: 113 GVKVVSPIDGSPAAKAGIK-PGDVIIKIDGKSVGGVSLDEAVKLI 156

Length = 406

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	241
KOG3606|consensus	358		99.67
KOG3606|consensus	358		99.54
KOG0609|consensus	542		99.2
PF00595	81	PDZ: PDZ domain (Also known as DHR or GLGF) Coordi	99.17
PF13180	82	PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_	98.9
cd00136	70	PDZ PDZ domain, also called DHR (Dlg homologous re	98.82
cd00992	82	PDZ_signaling PDZ domain found in a variety of Eum	98.78
cd00991	79	PDZ_archaeal_metalloprotease PDZ domain of archaea	98.75
smart00228	85	PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Als	98.75
cd00988	85	PDZ_CTP_protease PDZ domain of C-terminal processi	98.72
cd00987	90	PDZ_serine_protease PDZ domain of tryspin-like ser	98.65
KOG3209|consensus	984		98.63
cd00989	79	PDZ_metalloprotease PDZ domain of bacterial and pl	98.59
KOG3550|consensus	207		98.56
cd00986	79	PDZ_LON_protease PDZ domain of ATP-dependent LON s	98.55
PLN00049	389	carboxyl-terminal processing protease; Provisional	98.43
cd00990	80	PDZ_glycyl_aminopeptidase PDZ domain associated wi	98.43
COG0793	406	Prc Periplasmic protease [Cell envelope biogenesis	98.29
KOG3549|consensus	505		98.22
TIGR00225	334	prc C-terminal peptidase (prc). A C-terminal pepti	98.2
PRK10139	455	serine endoprotease; Provisional	98.18
TIGR02037	428	degP_htrA_DO periplasmic serine protease, Do/DeqQ	98.15
TIGR00054	420	RIP metalloprotease RseP. A model that detects fra	98.13
TIGR02037	428	degP_htrA_DO periplasmic serine protease, Do/DeqQ	98.12
PRK10139	455	serine endoprotease; Provisional	98.12
TIGR02038	351	protease_degS periplasmic serine pepetdase DegS. T	98.1
PRK10942	473	serine endoprotease; Provisional	98.1
KOG3209|consensus	984		98.09
KOG3553|consensus	124		98.09
TIGR01713	259	typeII_sec_gspC general secretion pathway protein	98.08
PRK11186	667	carboxy-terminal protease; Provisional	98.07
PRK10898	353	serine endoprotease; Provisional	98.04
PRK10779	449	zinc metallopeptidase RseP; Provisional	98.03
KOG3551|consensus	506		98.02
PRK10942	473	serine endoprotease; Provisional	98.01
PRK10779	449	zinc metallopeptidase RseP; Provisional	97.9
KOG3580|consensus	1027		97.9
KOG3605|consensus	829		97.87
KOG3580|consensus	1027		97.72
KOG1892|consensus	1629		97.67
KOG3651|consensus	429		97.66
TIGR00054	420	RIP metalloprotease RseP. A model that detects fra	97.66
TIGR03279	433	cyano_FeS_chp putative FeS-containing Cyanobacteri	97.63
KOG3571|consensus	626		97.61
TIGR02860	402	spore_IV_B stage IV sporulation protein B. SpoIVB,	97.53
KOG3552|consensus	1298		97.37
KOG3605|consensus	829		97.36
COG0265	347	DegQ Trypsin-like serine proteases, typically peri	97.15
KOG3129|consensus	231		97.05
KOG3542|consensus	1283		96.98
PF14685	88	Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6	96.93
PF04495	138	GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro:	96.23
PRK09681	276	putative type II secretion protein GspC; Provision	96.21
KOG1738|consensus	638		95.91
KOG1320|consensus	473		95.63
KOG3938|consensus	334		95.42
KOG0606|consensus	1205		95.29
KOG1421|consensus	955		94.98
COG3480	342	SdrC Predicted secreted protein containing a PDZ d	94.96
cd06403	80	PB1_Par6 The PB1 domain is an essential part of Pa	94.42
KOG3532|consensus	1051		94.34
COG3975	558	Predicted protease with the C-terminal PDZ domain	93.78
PF12812	78	PDZ_1: PDZ-like domain	93.01
COG3031	275	PulC Type II secretory pathway, component PulC [In	92.86
KOG4407|consensus	1973		89.38
COG0750	375	Predicted membrane-associated Zn-dependent proteas	88.98
KOG3834|consensus	462		85.77

>KOG3606|consensus

Probab=99.67  E-value=1.3e-16  Score=146.50  Aligned_cols=109  Identities=69%  Similarity=0.962  Sum_probs=92.7

Q ss_pred             CCcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCCcccccccccCCCCCCCCC
Q psy16075          1 VPGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQRANMSVPRRGSYSRTSQ   80 (241)
Q Consensus         1 ~pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~q~~~~~~~R~~~~~~~s~   80 (241)
                      +|||||+++++||.|+..|||.++|+|++|||+.|.|++++|+.+||-+++.++.++|+|++|+.++. -.+++++.+.|
T Consensus       193 vpGIFISRlVpGGLAeSTGLLaVnDEVlEVNGIEVaGKTLDQVTDMMvANshNLIiTVkPANQRnnvv-r~~~~~~~sg~  271 (358)
T KOG3606|consen  193 VPGIFISRLVPGGLAESTGLLAVNDEVLEVNGIEVAGKTLDQVTDMMVANSHNLIITVKPANQRNNVV-RGRRSFGSSGQ  271 (358)
T ss_pred             cCceEEEeecCCccccccceeeecceeEEEcCEEeccccHHHHHHHHhhcccceEEEeccccccccee-ecccccccCCC
Confidence            58999999999999999999999999999999999999999999999999999999999999999864 34445667777


Q ss_pred             CCCCCCCCCcCcccCCCCCCcchhhhhhccc
Q psy16075         81 LSSDSHQSTQSIATTNNSEDDEQDEVVDLTG  111 (241)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (241)
                      +|.++++--.+..+ ++.++||||.|.+++.
T Consensus       272 ~S~gp~~~~~~n~~-pe~e~~deD~iie~~~  301 (358)
T KOG3606|consen  272 LSDGPSQQGTPNFS-PEIEDDDEDDIIELTG  301 (358)
T ss_pred             CCCCCccCCCCCCC-ccccccccceeeeccC
Confidence            77776544444443 4567888888888887

>KOG3606|consensus

Probab=99.54  E-value=1.2e-15  Score=140.33  Aligned_cols=73  Identities=32%  Similarity=0.435  Sum_probs=65.7

Q ss_pred             ecccCCCCcccceeeeEEEEEeecccccchhcccccchhhhhhhhhhh---hhcccccC---CCccccccccCCCCCCCc
Q psy16075        117 CRIEPSTNSDIFERTKIVFVFTMLSKTTKWMSDMNGHALRILARESLE---ELSNYASS---RSKNIISTFLGGTPGKTK  190 (241)
Q Consensus       117 ~~~~p~t~s~~~~~~~i~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~e---e~~gygt~---~~k~~is~~l~~~~~k~~  190 (241)
                      -|++|+||+++|-+..-       +         ++|||||++|+..|   |.+||||+   |+|++|+++|...|+|++
T Consensus        69 gDLLPinNDDn~~ka~~-------s---------a~PlLR~~iQkr~ea~~~~~~fgt~sl~rr~~gl~~~lr~~~p~rr  132 (358)
T KOG3606|consen   69 GDLLPINNDDNLHKALS-------S---------ARPLLRLLIQKREEADEEKYGFGTDSLQRRKKGLSSLLRPKPPKRR  132 (358)
T ss_pred             CceecccCchhHHHHhh-------c---------cCchhhhhhhhhhhhhhhccCcccccHHHHhHhhHhhhcCCCCccC
Confidence            79999999999999876       7         99999999998866   57899999   778899999999999876


Q ss_pred             cceecCCCccccccc
Q psy16075        191 SHITISNPQDFRCGI  205 (241)
Q Consensus       191 ~~~~IS~P~dFRqv~  205 (241)
                      .||+||+|||||||-
T Consensus       133 ~~~~Is~P~DFRqVS  147 (358)
T KOG3606|consen  133 PHLSISLPQDFRQVS  147 (358)
T ss_pred             CCccccCccccceec
Confidence            699999999999983

>KOG0609|consensus

Probab=99.20  E-value=2.2e-11  Score=119.49  Aligned_cols=122  Identities=24%  Similarity=0.385  Sum_probs=107.4

Q ss_pred             cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCCcccccccccCCCCCCCCCCC
Q psy16075          3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQRANMSVPRRGSYSRTSQLS   82 (241)
Q Consensus         3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~q~~~~~~~R~~~~~~~s~~~   82 (241)
                      -++|++|+.||.|++.|+|++||+|++|||+++.+....+++.+++...|.++|+|.|...  ..               
T Consensus       147 ~~~vARI~~GG~~~r~glL~~GD~i~EvNGi~v~~~~~~e~q~~l~~~~G~itfkiiP~~~--~~---------------  209 (542)
T KOG0609|consen  147 KVVVARIMHGGMADRQGLLHVGDEILEVNGISVANKSPEELQELLRNSRGSITFKIIPSYR--PP---------------  209 (542)
T ss_pred             ccEEeeeccCCcchhccceeeccchheecCeecccCCHHHHHHHHHhCCCcEEEEEccccc--CC---------------
Confidence            3899999999999999999999999999999999999999999999999999999998633  11               


Q ss_pred             CCCCCCCcCcccCCCCCCcchhhhhhcccccceeecccCC-CCcccceeeeEEEEEeecccccchhccccc----chhhh
Q psy16075         83 SDSHQSTQSIATTNNSEDDEQDEVVDLTGITLEICRIEPS-TNSDIFERTKIVFVFTMLSKTTKWMSDMNG----HALRI  157 (241)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-t~s~~~~~~~i~~~~~~~~~~~~~~~~~~~----~~lrl  157 (241)
                               +       ..+-..|++++.|...++++-|| ++-..|.+++|+=+....+ -||||+...+    .+-.|
T Consensus       210 ---------~-------~~~~~~vra~FdYdP~~D~~IPCkEagl~F~~GDILqIv~qdD-~nWWQA~~~~~~~~~~AGL  272 (542)
T KOG0609|consen  210 ---------P-------QQQVVFVRALFDYDPKEDDLIPCKEAGLPFQRGDILQIVSQDD-PNWWQARRVGDPFGGLAGL  272 (542)
T ss_pred             ---------C-------ceeeeeehhhcCcCcccCCcccchhcCCcccccceeeeccCCC-cchhhhhcccCcccccccc
Confidence                     0       01246789999999999999999 9999999999999999988 9999999886    55556


Q ss_pred             h
Q psy16075        158 L  158 (241)
Q Consensus       158 ~  158 (241)
                      +
T Consensus       273 i  273 (542)
T KOG0609|consen  273 I  273 (542)
T ss_pred             c
Confidence            5

>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]

Probab=99.17  E-value=1.3e-10  Score=85.26  Aligned_cols=57  Identities=42%  Similarity=0.712  Sum_probs=53.3

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEe
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK   59 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~   59 (241)
                      .+++|..|.++++|+++| |++||+|++|||+++.++++++++++++...+.|+|+|.
T Consensus        25 ~~~~V~~v~~~~~a~~~g-l~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~~v~L~V~   81 (81)
T PF00595_consen   25 KGVFVSSVVPGSPAERAG-LKVGDRILEINGQSVRGMSHDEVVQLLKSASNPVTLTVQ   81 (81)
T ss_dssp             EEEEEEEECTTSHHHHHT-SSTTEEEEEETTEESTTSBHHHHHHHHHHSTSEEEEEEE
T ss_pred             CCEEEEEEeCCChHHhcc-cchhhhhheeCCEeCCCCCHHHHHHHHHCCCCcEEEEEC
Confidence            489999999999999999 599999999999999999999999999988888888874

PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....

>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C

Probab=98.90  E-value=8.1e-09  Score=76.42  Aligned_cols=65  Identities=23%  Similarity=0.449  Sum_probs=55.4

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCC--CcEEEEEecCCccccccc
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANS--SNLIITVKPANQRANMSV   69 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsss--g~VtLtV~p~~q~~~~~~   69 (241)
                      .|+.|..|.+++||+++|+ ++||+|++|||+++.  +..++..++....  ..+.|+|.|.++..++.+
T Consensus        14 ~g~~V~~V~~~spA~~aGl-~~GD~I~~ing~~v~--~~~~~~~~l~~~~~g~~v~l~v~R~g~~~~~~v   80 (82)
T PF13180_consen   14 GGVVVVSVIPGSPAAKAGL-QPGDIILAINGKPVN--SSEDLVNILSKGKPGDTVTLTVLRDGEELTVEV   80 (82)
T ss_dssp             SSEEEEEESTTSHHHHTTS--TTEEEEEETTEESS--SHHHHHHHHHCSSTTSEEEEEEEETTEEEEEEE
T ss_pred             CeEEEEEeCCCCcHHHCCC-CCCcEEEEECCEEcC--CHHHHHHHHHhCCCCCEEEEEEEECCEEEEEEE
Confidence            4899999999999999997 999999999999997  8999999995433  369999999988776643

...

>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif)

Probab=98.82  E-value=2.7e-08  Score=70.35  Aligned_cols=55  Identities=31%  Similarity=0.551  Sum_probs=49.7

Q ss_pred             cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCC-cEEEEE
Q psy16075          3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSS-NLIITV   58 (241)
Q Consensus         3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg-~VtLtV   58 (241)
                      +++|..|.+++||+++|+ ++||+|++|||+++.+.+++++.++++...+ .+.|+|
T Consensus        14 ~~~V~~v~~~s~a~~~gl-~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v   69 (70)
T cd00136          14 GVVVLSVEPGSPAERAGL-QAGDVILAVNGTDVKNLTLEDVAELLKKEVGEKVTLTV   69 (70)
T ss_pred             CEEEEEeCCCCHHHHcCC-CCCCEEEEECCEECCCCCHHHHHHHHhhCCCCeEEEEE
Confidence            799999999999999997 9999999999999998888999999987663 577765

Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos

>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements

Probab=98.78  E-value=4.1e-08  Score=70.83  Aligned_cols=56  Identities=41%  Similarity=0.741  Sum_probs=50.8

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEE
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITV   58 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV   58 (241)
                      .|++|..|.+++||+++|+ ++||+|++|||+++..++++++..+++...+.+.++|
T Consensus        26 ~~~~V~~v~~~s~a~~~gl-~~GD~I~~ing~~i~~~~~~~~~~~l~~~~~~v~l~v   81 (82)
T cd00992          26 GGIFVSRVEPGGPAERGGL-RVGDRILEVNGVSVEGLTHEEAVELLKNSGDEVTLTV   81 (82)
T ss_pred             CCeEEEEECCCChHHhCCC-CCCCEEEEECCEEcCccCHHHHHHHHHhCCCeEEEEE
Confidence            4799999999999999997 9999999999999999999999999987666666665

May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.

>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms

Probab=98.75  E-value=6e-08  Score=71.73  Aligned_cols=64  Identities=20%  Similarity=0.398  Sum_probs=55.2

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhC--CCcEEEEEecCCcccccc
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVAN--SSNLIITVKPANQRANMS   68 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKss--sg~VtLtV~p~~q~~~~~   68 (241)
                      .|++|..|.+++||+++|+ +.||+|++|||+++.  ++.++..++...  +..+.+++.+.++...+.
T Consensus        10 ~Gv~V~~V~~~spa~~aGL-~~GDiI~~Ing~~v~--~~~d~~~~l~~~~~g~~v~l~v~r~g~~~~~~   75 (79)
T cd00991          10 AGVVIVGVIVGSPAENAVL-HTGDVIYSINGTPIT--TLEDFMEALKPTKPGEVITVTVLPSTTKLTNV   75 (79)
T ss_pred             CcEEEEEECCCChHHhcCC-CCCCEEEEECCEEcC--CHHHHHHHHhcCCCCCEEEEEEEECCEEEEEE
Confidence            4899999999999999997 999999999999999  899999999764  346888888887665543

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2

Probab=98.75  E-value=8.1e-08  Score=69.01  Aligned_cols=59  Identities=34%  Similarity=0.536  Sum_probs=52.6

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecC
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA   61 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~   61 (241)
                      .|++|..|.++++|+++|+ ++||+|++|||+++.++++.+...+++.....+.+.+.+.
T Consensus        26 ~~~~i~~v~~~s~a~~~gl-~~GD~I~~In~~~v~~~~~~~~~~~~~~~~~~~~l~i~r~   84 (85)
T smart00228       26 GGVVVSSVVPGSPAAKAGL-KVGDVILEVNGTSVEGLTHLEAVDLLKKAGGKVTLTVLRG   84 (85)
T ss_pred             CCEEEEEECCCCHHHHcCC-CCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEeC
Confidence            4899999999999999995 9999999999999999999999999987655778877664

Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.

>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts

Probab=98.72  E-value=7.9e-08  Score=70.31  Aligned_cols=67  Identities=22%  Similarity=0.497  Sum_probs=55.2

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCC-cEEEEEecC-Cccccccc
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSS-NLIITVKPA-NQRANMSV   69 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg-~VtLtV~p~-~q~~~~~~   69 (241)
                      .+++|..|.+++||+++|+ ++||+|++|||+++...+++++..+++...+ .+.+++.+. ++..++.+
T Consensus        13 ~~~~V~~v~~~s~a~~~gl-~~GD~I~~vng~~i~~~~~~~~~~~l~~~~~~~i~l~v~r~~~~~~~~~~   81 (85)
T cd00988          13 GGLVITSVLPGSPAAKAGI-KAGDIIVAIDGEPVDGLSLEDVVKLLRGKAGTKVRLTLKRGDGEPREVTL   81 (85)
T ss_pred             CeEEEEEecCCCCHHHcCC-CCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCEEEEEEEcCCCCEEEEEE
Confidence            3689999999999999997 9999999999999997667999999976443 578888877 65555443

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis

Probab=98.65  E-value=1.9e-07  Score=68.51  Aligned_cols=63  Identities=24%  Similarity=0.413  Sum_probs=53.4

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhC--CCcEEEEEecCCccccc
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVAN--SSNLIITVKPANQRANM   67 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKss--sg~VtLtV~p~~q~~~~   67 (241)
                      .|++|..|.+++||+++|+ +.||+|++|||+++.  ++.++.+++...  ...+.+++.+.++...+
T Consensus        24 ~g~~V~~v~~~s~a~~~gl-~~GD~I~~Ing~~i~--~~~~~~~~l~~~~~~~~i~l~v~r~g~~~~~   88 (90)
T cd00987          24 KGVLVASVDPGSPAAKAGL-KPGDVILAVNGKPVK--SVADLRRALAELKPGDKVTLTVLRGGKELTV   88 (90)
T ss_pred             CEEEEEEECCCCHHHHcCC-CcCCEEEEECCEECC--CHHHHHHHHHhcCCCCEEEEEEEECCEEEEe
Confidence            3899999999999999997 999999999999998  788888888765  34688888887765443

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>KOG3209|consensus

Probab=98.63  E-value=3.6e-08  Score=100.20  Aligned_cols=63  Identities=24%  Similarity=0.395  Sum_probs=57.6

Q ss_pred             EEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCCcccc
Q psy16075          4 IFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQRAN   66 (241)
Q Consensus         4 IfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~q~~~   66 (241)
                      --|.+|++|+||+|+|.|++||+|++|||++|.+++|.+++++||.++-.|+|+|.+..+-..
T Consensus       780 sgiGrIieGSPAdRCgkLkVGDrilAVNG~sI~~lsHadiv~LIKdaGlsVtLtIip~ee~~~  842 (984)
T KOG3209|consen  780 SGIGRIIEGSPADRCGKLKVGDRILAVNGQSILNLSHADIVSLIKDAGLSVTLTIIPPEEAGP  842 (984)
T ss_pred             CCccccccCChhHhhccccccceEEEecCeeeeccCchhHHHHHHhcCceEEEEEcChhccCC
Confidence            348899999999999999999999999999999999999999999999899999998765443

>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms

Probab=98.59  E-value=3.5e-07  Score=65.84  Aligned_cols=62  Identities=27%  Similarity=0.475  Sum_probs=52.3

Q ss_pred             cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCC-CcEEEEEecCCccccc
Q psy16075          3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANS-SNLIITVKPANQRANM   67 (241)
Q Consensus         3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsss-g~VtLtV~p~~q~~~~   67 (241)
                      .++|..|.++++|+++|+ ++||+|++|||+++.  +++++..+++... ..+.+++.+.++...+
T Consensus        13 ~~~V~~v~~~s~a~~~gl-~~GD~I~~ing~~i~--~~~~~~~~l~~~~~~~~~l~v~r~~~~~~~   75 (79)
T cd00989          13 EPVIGEVVPGSPAAKAGL-KAGDRILAINGQKIK--SWEDLVDAVQENPGKPLTLTVERNGETITL   75 (79)
T ss_pred             CcEEEeECCCCHHHHcCC-CCCCEEEEECCEECC--CHHHHHHHHHHCCCceEEEEEEECCEEEEE
Confidence            378999999999999997 999999999999998  8899999997653 3678888887655444

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>KOG3550|consensus

Probab=98.56  E-value=1.5e-07  Score=81.53  Aligned_cols=59  Identities=32%  Similarity=0.630  Sum_probs=55.1

Q ss_pred             cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecC
Q psy16075          3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA   61 (241)
Q Consensus         3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~   61 (241)
                      .|+|++|+|||.|++-|-|+.||.+++|||++|.+-.|+.++++||++.+.|.|.|..-
T Consensus       116 piyisriipggvadrhgglkrgdqllsvngvsvege~hekavellkaa~gsvklvvryt  174 (207)
T KOG3550|consen  116 PIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKAAVGSVKLVVRYT  174 (207)
T ss_pred             ceEEEeecCCccccccCcccccceeEeecceeecchhhHHHHHHHHHhcCcEEEEEecC
Confidence            59999999999999998789999999999999999999999999999999999888643

>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases

Probab=98.55  E-value=4.5e-07  Score=66.35  Aligned_cols=63  Identities=17%  Similarity=0.365  Sum_probs=52.8

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhC--CCcEEEEEecCCcccccc
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVAN--SSNLIITVKPANQRANMS   68 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKss--sg~VtLtV~p~~q~~~~~   68 (241)
                      .|++|..|.+++||+. |+ ++||+|++|||+++.  +++++..++...  +..+.+++.+.++..++.
T Consensus         8 ~Gv~V~~V~~~s~A~~-gL-~~GD~I~~Ing~~v~--~~~~~~~~l~~~~~~~~v~l~v~r~g~~~~~~   72 (79)
T cd00986           8 HGVYVTSVVEGMPAAG-KL-KAGDHIIAVDGKPFK--EAEELIDYIQSKKEGDTVKLKVKREEKELPED   72 (79)
T ss_pred             cCEEEEEECCCCchhh-CC-CCCCEEEEECCEECC--CHHHHHHHHHhCCCCCEEEEEEEECCEEEEEE
Confidence            4899999999999997 75 999999999999998  899999999753  336888888887765543

Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>PLN00049 carboxyl-terminal processing protease; Provisional

Probab=98.43  E-value=7.8e-07  Score=84.13  Aligned_cols=70  Identities=21%  Similarity=0.415  Sum_probs=61.2

Q ss_pred             cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCC-cEEEEEecCCcccccccccCC
Q psy16075          3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSS-NLIITVKPANQRANMSVPRRG   73 (241)
Q Consensus         3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg-~VtLtV~p~~q~~~~~~~R~~   73 (241)
                      |++|..|.+++||+++|+ +.||+|++|||++|.++++.++..+++...+ .+.|+|.+.++..++.+.|..
T Consensus       103 g~~V~~V~~~SPA~~aGl-~~GD~Iv~InG~~v~~~~~~~~~~~l~g~~g~~v~ltv~r~g~~~~~~l~r~~  173 (389)
T PLN00049        103 GLVVVAPAPGGPAARAGI-RPGDVILAIDGTSTEGLSLYEAADRLQGPEGSSVELTLRRGPETRLVTLTREK  173 (389)
T ss_pred             cEEEEEeCCCChHHHcCC-CCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEeee
Confidence            789999999999999997 9999999999999998888999999976554 688999988887777777653

>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases

Probab=98.43  E-value=8.8e-07  Score=64.22  Aligned_cols=62  Identities=19%  Similarity=0.192  Sum_probs=48.4

Q ss_pred             cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCCcccccc
Q psy16075          3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQRANMS   68 (241)
Q Consensus         3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~q~~~~~   68 (241)
                      |+.|..|.++++|+++|+ ++||+|++|||+++.  ++.++...++ .+..+.+++.+.++...+.
T Consensus        13 ~~~V~~V~~~s~a~~aGl-~~GD~I~~Ing~~v~--~~~~~l~~~~-~~~~v~l~v~r~g~~~~~~   74 (80)
T cd00990          13 LGKVTFVRDDSPADKAGL-VAGDELVAVNGWRVD--ALQDRLKEYQ-AGDPVELTVFRDDRLIEVP   74 (80)
T ss_pred             cEEEEEECCCChHHHhCC-CCCCEEEEECCEEhH--HHHHHHHhcC-CCCEEEEEEEECCEEEEEE
Confidence            589999999999999997 999999999999998  3555444332 3346888888877665553

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]

Probab=98.29  E-value=1.8e-06  Score=82.70  Aligned_cols=71  Identities=20%  Similarity=0.403  Sum_probs=60.8

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCC-cEEEEEecC--CcccccccccCC
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSS-NLIITVKPA--NQRANMSVPRRG   73 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg-~VtLtV~p~--~q~~~~~~~R~~   73 (241)
                      .++.|.++++++||+++|+ ++||.|+.|||.++.++..+++++.|++..| .|+|++.|.  ++...+++.|-.
T Consensus       112 ~~~~V~s~~~~~PA~kagi-~~GD~I~~IdG~~~~~~~~~~av~~irG~~Gt~V~L~i~r~~~~k~~~v~l~Re~  185 (406)
T COG0793         112 GGVKVVSPIDGSPAAKAGI-KPGDVIIKIDGKSVGGVSLDEAVKLIRGKPGTKVTLTILRAGGGKPFTVTLTREE  185 (406)
T ss_pred             CCcEEEecCCCChHHHcCC-CCCCEEEEECCEEccCCCHHHHHHHhCCCCCCeEEEEEEEcCCCceeEEEEEEEE
Confidence            3688999999999999995 9999999999999999999999999998877 599999986  445666655543

>KOG3549|consensus

Probab=98.22  E-value=2e-06  Score=82.31  Aligned_cols=57  Identities=32%  Similarity=0.497  Sum_probs=54.2

Q ss_pred             cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEe
Q psy16075          3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK   59 (241)
Q Consensus         3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~   59 (241)
                      .++|++|.+.-.|+..|+|.+||.|++|||+.|..++|+|++++|+.++..|+|+|.
T Consensus        81 PvviSkI~kdQaAd~tG~LFvGDAilqvNGi~v~~c~HeevV~iLRNAGdeVtlTV~  137 (505)
T KOG3549|consen   81 PVVISKIYKDQAADITGQLFVGDAILQVNGIYVTACPHEEVVNILRNAGDEVTLTVK  137 (505)
T ss_pred             cEEeehhhhhhhhhhcCceEeeeeeEEeccEEeecCChHHHHHHHHhcCCEEEEEeH
Confidence            589999999999999999999999999999999999999999999988889999884

>TIGR00225 prc C-terminal peptidase (prc)

Probab=98.20  E-value=4.9e-06  Score=76.67  Aligned_cols=69  Identities=25%  Similarity=0.427  Sum_probs=55.4

Q ss_pred             cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCC-cEEEEEecCCcc--cccccccC
Q psy16075          3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSS-NLIITVKPANQR--ANMSVPRR   72 (241)
Q Consensus         3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg-~VtLtV~p~~q~--~~~~~~R~   72 (241)
                      +++|..|.+++||+++|+ ++||+|++|||+++.+.+..++..+++...+ .+.++|.+.++.  .++++.|.
T Consensus        63 ~~~V~~V~~~spA~~aGL-~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~g~~~~~~v~l~~~  134 (334)
T TIGR00225        63 EIVIVSPFEGSPAEKAGI-KPGDKIIKINGKSVAGMSLDDAVALIRGKKGTKVSLEILRAGKSKPLTFTLKRD  134 (334)
T ss_pred             EEEEEEeCCCChHHHcCC-CCCCEEEEECCEECCCCCHHHHHHhccCCCCCEEEEEEEeCCCCceEEEEEEEE
Confidence            588999999999999997 9999999999999997777888888865444 688899887643  33444443

A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.

>PRK10139 serine endoprotease; Provisional

Probab=98.18  E-value=6.4e-06  Score=79.77  Aligned_cols=64  Identities=23%  Similarity=0.369  Sum_probs=56.6

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCCcccccc
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQRANMS   68 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~q~~~~~   68 (241)
                      .|++|..|.+++||+++|+ +.||+|++|||+++.  +++++.++++.....+.|+|.+.++...+.
T Consensus       390 ~Gv~V~~V~~~spA~~aGL-~~GD~I~~Ing~~v~--~~~~~~~~l~~~~~~v~l~v~R~g~~~~~~  453 (455)
T PRK10139        390 KGIKIDEVVKGSPAAQAGL-QKDDVIIGVNRDRVN--SIAEMRKVLAAKPAIIALQIVRGNESIYLL  453 (455)
T ss_pred             CceEEEEeCCCChHHHcCC-CCCCEEEEECCEEcC--CHHHHHHHHHhCCCeEEEEEEECCEEEEEE
Confidence            3789999999999999998 999999999999998  899999999876667889999988765543

>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family

Probab=98.15  E-value=8e-06  Score=77.50  Aligned_cols=63  Identities=19%  Similarity=0.346  Sum_probs=55.5

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhC--CCcEEEEEecCCccccc
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVAN--SSNLIITVKPANQRANM   67 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKss--sg~VtLtV~p~~q~~~~   67 (241)
                      .|++|..|.+++||+++|+ ++||.|++|||+++.  +++++.++++..  +..+.|+|.+.++...+
T Consensus       362 ~Gv~V~~V~~~SpA~~aGL-~~GDvI~~Ing~~V~--s~~d~~~~l~~~~~g~~v~l~v~R~g~~~~~  426 (428)
T TIGR02037       362 KGVVVTKVVSGSPAARAGL-QPGDVILSVNQQPVS--SVAELRKVLDRAKKGGRVALLILRGGATIFV  426 (428)
T ss_pred             CceEEEEeCCCCHHHHcCC-CCCCEEEEECCEEcC--CHHHHHHHHHhcCCCCEEEEEEEECCEEEEE
Confidence            4799999999999999997 999999999999998  899999999864  34689999998876554

This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.

>TIGR00054 RIP metalloprotease RseP

Probab=98.13  E-value=8.4e-06  Score=77.91  Aligned_cols=65  Identities=22%  Similarity=0.313  Sum_probs=56.6

Q ss_pred             cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCC-cEEEEEecCCcccccccc
Q psy16075          3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSS-NLIITVKPANQRANMSVP   70 (241)
Q Consensus         3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg-~VtLtV~p~~q~~~~~~~   70 (241)
                      ++.|..|.+++||+++|+ ++||+|++|||+++.  +++|+.+.++...+ .+.++|.|+++...+.+.
T Consensus       204 g~vV~~V~~~SpA~~aGL-~~GD~Iv~Vng~~V~--s~~dl~~~l~~~~~~~v~l~v~R~g~~~~~~v~  269 (420)
T TIGR00054       204 EPVLSDVTPNSPAEKAGL-KEGDYIQSINGEKLR--SWTDFVSAVKENPGKSMDIKVERNGETLSISLT  269 (420)
T ss_pred             CcEEEEECCCCHHHHcCC-CCCCEEEEECCEECC--CHHHHHHHHHhCCCCceEEEEEECCEEEEEEEE
Confidence            578999999999999997 999999999999998  89999999987544 588999998887666543

A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.

>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family

Probab=98.12  E-value=8.4e-06  Score=77.35  Aligned_cols=65  Identities=22%  Similarity=0.440  Sum_probs=55.7

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhC--CCcEEEEEecCCccccccc
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVAN--SSNLIITVKPANQRANMSV   69 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKss--sg~VtLtV~p~~q~~~~~~   69 (241)
                      .|++|..|.+++||+++|+ +.||+|++|||+++.  ++.++..++...  +..+.++|.+.++..++.+
T Consensus       257 ~Gv~V~~V~~~spA~~aGL-~~GDvI~~Vng~~i~--~~~~~~~~l~~~~~g~~v~l~v~R~g~~~~~~v  323 (428)
T TIGR02037       257 RGALVAQVLPGSPAEKAGL-KAGDVILSVNGKPIS--SFADLRRAIGTLKPGKKVTLGILRKGKEKTITV  323 (428)
T ss_pred             CceEEEEccCCCChHHcCC-CCCCEEEEECCEEcC--CHHHHHHHHHhcCCCCEEEEEEEECCEEEEEEE
Confidence            4899999999999999997 999999999999998  888888888653  3468999999887766543

This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.

>PRK10139 serine endoprotease; Provisional

Probab=98.12  E-value=9.3e-06  Score=78.65  Aligned_cols=66  Identities=15%  Similarity=0.340  Sum_probs=57.2

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhC--CCcEEEEEecCCcccccccc
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVAN--SSNLIITVKPANQRANMSVP   70 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKss--sg~VtLtV~p~~q~~~~~~~   70 (241)
                      .|++|..|.+++||+++|+ +.||+|++|||+++.  +++++...+...  +..+.++|.+.+++.++.+.
T Consensus       290 ~Gv~V~~V~~~SpA~~AGL-~~GDvIl~InG~~V~--s~~dl~~~l~~~~~g~~v~l~V~R~G~~~~l~v~  357 (455)
T PRK10139        290 RGAFVSEVLPNSGSAKAGV-KAGDIITSLNGKPLN--SFAELRSRIATTEPGTKVKLGLLRNGKPLEVEVT  357 (455)
T ss_pred             CceEEEEECCCChHHHCCC-CCCCEEEEECCEECC--CHHHHHHHHHhcCCCCEEEEEEEECCEEEEEEEE
Confidence            4899999999999999998 999999999999999  899999988652  34688999998887776554

>TIGR02038 protease_degS periplasmic serine pepetdase DegS

Probab=98.10  E-value=1e-05  Score=75.61  Aligned_cols=65  Identities=26%  Similarity=0.460  Sum_probs=55.9

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhC--CCcEEEEEecCCccccccc
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVAN--SSNLIITVKPANQRANMSV   69 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKss--sg~VtLtV~p~~q~~~~~~   69 (241)
                      .|++|..|.+++||+++|+ ++||+|++|||+++.  +++++.++++..  +..+.++|.+.++...+.+
T Consensus       278 ~Gv~V~~V~~~spA~~aGL-~~GDvI~~Ing~~V~--s~~dl~~~l~~~~~g~~v~l~v~R~g~~~~~~v  344 (351)
T TIGR02038       278 RGIVITGVDPNGPAARAGI-LVRDVILKYDGKDVI--GAEELMDRIAETRPGSKVMVTVLRQGKQLELPV  344 (351)
T ss_pred             ccceEeecCCCChHHHCCC-CCCCEEEEECCEEcC--CHHHHHHHHHhcCCCCEEEEEEEECCEEEEEEE
Confidence            3899999999999999997 999999999999998  899999988753  3468899998887666544

This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).

>PRK10942 serine endoprotease; Provisional

Probab=98.10  E-value=1.2e-05  Score=78.34  Aligned_cols=64  Identities=17%  Similarity=0.354  Sum_probs=56.4

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCCcccccc
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQRANMS   68 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~q~~~~~   68 (241)
                      .|++|..|.++++|+++|+ ++||+|++|||++|.  +++++.++++.....+.|+|.+.++...+.
T Consensus       408 ~gvvV~~V~~~S~A~~aGL-~~GDvIv~VNg~~V~--s~~dl~~~l~~~~~~v~l~V~R~g~~~~v~  471 (473)
T PRK10942        408 KGVVVDNVKPGTPAAQIGL-KKGDVIIGANQQPVK--NIAELRKILDSKPSVLALNIQRGDSSIYLL  471 (473)
T ss_pred             CCeEEEEeCCCChHHHcCC-CCCCEEEEECCEEcC--CHHHHHHHHHhCCCeEEEEEEECCEEEEEE
Confidence            3789999999999999997 999999999999999  899999999876667889999988765543

>KOG3209|consensus

Probab=98.09  E-value=4.8e-06  Score=85.16  Aligned_cols=57  Identities=23%  Similarity=0.430  Sum_probs=50.2

Q ss_pred             cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEec
Q psy16075          3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKP   60 (241)
Q Consensus         3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p   60 (241)
                      ++||.++.++|||.+.|.+++||+|++|||++..+|+|+.+..+|| +++...+++++
T Consensus       924 ~LfVLRlAeDGPA~rdGrm~VGDqi~eINGesTkgmtH~rAIelIk-~gg~~vll~Lr  980 (984)
T KOG3209|consen  924 DLFVLRLAEDGPAIRDGRMRVGDQITEINGESTKGMTHDRAIELIK-QGGRRVLLLLR  980 (984)
T ss_pred             ceEEEEeccCCCccccCceeecceEEEecCcccCCCcHHHHHHHHH-hCCeEEEEEec
Confidence            5899999999999999999999999999999999999999999998 55555444443

>KOG3553|consensus

Probab=98.09  E-value=3e-06  Score=69.00  Aligned_cols=58  Identities=29%  Similarity=0.447  Sum_probs=50.0

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecC
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA   61 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~   61 (241)
                      .||+|.+|.+||||+.+|| +.+|.|++|||-++.-++|++++..|+. +..+.++|.+.
T Consensus        59 ~GiYvT~V~eGsPA~~AGL-rihDKIlQvNG~DfTMvTHd~Avk~i~k-~~vl~mLVaR~  116 (124)
T KOG3553|consen   59 KGIYVTRVSEGSPAEIAGL-RIHDKILQVNGWDFTMVTHDQAVKRITK-EEVLRMLVARQ  116 (124)
T ss_pred             ccEEEEEeccCChhhhhcc-eecceEEEecCceeEEEEhHHHHHHhhH-hHHHHHHHHhh
Confidence            3899999999999999998 9999999999999998899999999975 33455555553

>TIGR01713 typeII_sec_gspC general secretion pathway protein C

Probab=98.08  E-value=1.3e-05  Score=72.64  Aligned_cols=64  Identities=22%  Similarity=0.255  Sum_probs=55.9

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCC--CcEEEEEecCCcccccc
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANS--SNLIITVKPANQRANMS   68 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsss--g~VtLtV~p~~q~~~~~   68 (241)
                      .|+.|..+.++++|+++|+ +.||+|++|||+++.  +++++.+++....  ..+.++|.++++...+.
T Consensus       191 ~G~~v~~v~~~s~a~~aGL-r~GDvIv~ING~~i~--~~~~~~~~l~~~~~~~~v~l~V~R~G~~~~i~  256 (259)
T TIGR01713       191 EGYRLNPGKDPSLFYKSGL-QDGDIAVALNGLDLR--DPEQAFQALQMLREETNLTLTVERDGQREDIY  256 (259)
T ss_pred             eEEEEEecCCCCHHHHcCC-CCCCEEEEECCEEcC--CHHHHHHHHHhcCCCCeEEEEEEECCEEEEEE
Confidence            4889999999999999998 999999999999999  8999999997643  36899999998876553

This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.

>PRK11186 carboxy-terminal protease; Provisional

Probab=98.07  E-value=8.9e-06  Score=82.67  Aligned_cols=70  Identities=27%  Similarity=0.442  Sum_probs=57.1

Q ss_pred             cEEEEEEcCCCHHhhh-CCCCCCCEEEEEC--C---EEcCCCCHHHHHHHHHhCCC-cEEEEEecC---CcccccccccC
Q psy16075          3 GIFISRLVPGGLAEST-GLLAVNDEVLEVN--G---ILVAGKSLDQVTDMMVANSS-NLIITVKPA---NQRANMSVPRR   72 (241)
Q Consensus         3 GIfIs~VvpGSpAerA-GLLqvGD~ILeIN--G---qsV~glshdeVv~LLKsssg-~VtLtV~p~---~q~~~~~~~R~   72 (241)
                      +++|..|++||||+++ |+ ++||+|++||  |   +++.++..++++++|++..| .|.|+|.+.   ++...+++.|.
T Consensus       256 ~~~V~~vipGsPA~ka~gL-k~GD~IlaVn~~g~~~~dv~g~~~~~vv~lirG~~Gt~V~LtV~r~~~~~~~~~vtl~R~  334 (667)
T PRK11186        256 YTVINSLVAGGPAAKSKKL-SVGDKIVGVGQDGKPIVDVIGWRLDDVVALIKGPKGSKVRLEILPAGKGTKTRIVTLTRD  334 (667)
T ss_pred             eEEEEEccCCChHHHhCCC-CCCCEEEEECCCCCcccccccCCHHHHHHHhcCCCCCEEEEEEEeCCCCCceEEEEEEee
Confidence            4789999999999998 76 9999999999  4   46668899999999998777 588999863   34566666665


Q ss_pred             C
Q psy16075         73 G   73 (241)
Q Consensus        73 ~   73 (241)
                      .
T Consensus       335 ~  335 (667)
T PRK11186        335 K  335 (667)
T ss_pred             e
Confidence            4

>PRK10898 serine endoprotease; Provisional

Probab=98.04  E-value=1.8e-05  Score=74.18  Aligned_cols=65  Identities=25%  Similarity=0.380  Sum_probs=55.1

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhC--CCcEEEEEecCCccccccc
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVAN--SSNLIITVKPANQRANMSV   69 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKss--sg~VtLtV~p~~q~~~~~~   69 (241)
                      .|++|..|.+++||+++|+ +.||+|++|||+++.  ++.++.+.+...  +..+.++|.+.++...+.+
T Consensus       279 ~Gv~V~~V~~~spA~~aGL-~~GDvI~~Ing~~V~--s~~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v  345 (353)
T PRK10898        279 QGIVVNEVSPDGPAAKAGI-QVNDLIISVNNKPAI--SALETMDQVAEIRPGSVIPVVVMRDDKQLTLQV  345 (353)
T ss_pred             CeEEEEEECCCChHHHcCC-CCCCEEEEECCEEcC--CHHHHHHHHHhcCCCCEEEEEEEECCEEEEEEE
Confidence            4899999999999999998 999999999999998  788888888652  3368899998887766644

>PRK10779 zinc metallopeptidase RseP; Provisional

Probab=98.03  E-value=1.7e-05  Score=76.29  Aligned_cols=64  Identities=14%  Similarity=0.341  Sum_probs=55.3

Q ss_pred             cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCC-cEEEEEecCCccccccc
Q psy16075          3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSS-NLIITVKPANQRANMSV   69 (241)
Q Consensus         3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg-~VtLtV~p~~q~~~~~~   69 (241)
                      +.+|..|.+++||+++|+ ++||+|++|||+++.  +++|+.+.++...+ .+.++|.+.++...+.+
T Consensus       222 ~~vV~~V~~~SpA~~AGL-~~GDvIl~Ing~~V~--s~~dl~~~l~~~~~~~v~l~v~R~g~~~~~~v  286 (449)
T PRK10779        222 EPVLAEVQPNSAASKAGL-QAGDRIVKVDGQPLT--QWQTFVTLVRDNPGKPLALEIERQGSPLSLTL  286 (449)
T ss_pred             CcEEEeeCCCCHHHHcCC-CCCCEEEEECCEEcC--CHHHHHHHHHhCCCCEEEEEEEECCEEEEEEE
Confidence            368999999999999998 999999999999998  89999999977544 68899999887666544

>KOG3551|consensus

Probab=98.02  E-value=7.6e-06  Score=79.14  Aligned_cols=58  Identities=28%  Similarity=0.417  Sum_probs=53.1

Q ss_pred             cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEec
Q psy16075          3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKP   60 (241)
Q Consensus         3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p   60 (241)
                      .|.|+.|.+|-.|++++-|.+||.|++|||.++...+|+|+++.||.++..|.+.|+-
T Consensus       111 PIlISKIFkGlAADQt~aL~~gDaIlSVNG~dL~~AtHdeAVqaLKraGkeV~levKy  168 (506)
T KOG3551|consen  111 PILISKIFKGLAADQTGALFLGDAILSVNGEDLRDATHDEAVQALKRAGKEVLLEVKY  168 (506)
T ss_pred             ceehhHhccccccccccceeeccEEEEecchhhhhcchHHHHHHHHhhCceeeeeeee
Confidence            4899999999999999988999999999999999999999999999888877776653

>PRK10942 serine endoprotease; Provisional

Probab=98.01  E-value=2e-05  Score=76.68  Aligned_cols=66  Identities=21%  Similarity=0.385  Sum_probs=56.8

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCC--CcEEEEEecCCcccccccc
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANS--SNLIITVKPANQRANMSVP   70 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsss--g~VtLtV~p~~q~~~~~~~   70 (241)
                      .|++|..|.+++||+++|+ +.||+|++|||++|.  +++++...+....  ..+.++|.+.++...+.+.
T Consensus       311 ~GvlV~~V~~~SpA~~AGL-~~GDvIl~InG~~V~--s~~dl~~~l~~~~~g~~v~l~v~R~G~~~~v~v~  378 (473)
T PRK10942        311 RGAFVSQVLPNSSAAKAGI-KAGDVITSLNGKPIS--SFAALRAQVGTMPVGSKLTLGLLRDGKPVNVNVE  378 (473)
T ss_pred             CceEEEEECCCChHHHcCC-CCCCEEEEECCEECC--CHHHHHHHHHhcCCCCEEEEEEEECCeEEEEEEE
Confidence            3899999999999999997 999999999999999  8999998886543  3688999998887766543

>PRK10779 zinc metallopeptidase RseP; Provisional

Probab=97.90  E-value=2.6e-05  Score=74.99  Aligned_cols=60  Identities=23%  Similarity=0.352  Sum_probs=50.9

Q ss_pred             EEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCC--cEEEEEecCCccccc
Q psy16075          5 FISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSS--NLIITVKPANQRANM   67 (241)
Q Consensus         5 fIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg--~VtLtV~p~~q~~~~   67 (241)
                      +|..|.++|||+++|+ +.||+|++|||+++.  +++++...+....+  .+.++|.|.+++.+.
T Consensus       129 lV~~V~~~SpA~kAGL-k~GDvI~~vnG~~V~--~~~~l~~~v~~~~~g~~v~v~v~R~gk~~~~  190 (449)
T PRK10779        129 VVGEIAPNSIAAQAQI-APGTELKAVDGIETP--DWDAVRLALVSKIGDESTTITVAPFGSDQRR  190 (449)
T ss_pred             cccccCCCCHHHHcCC-CCCCEEEEECCEEcC--CHHHHHHHHHhhccCCceEEEEEeCCccceE
Confidence            5889999999999998 999999999999999  88888877754433  689999998875544

>KOG3580|consensus

Probab=97.90  E-value=2.2e-05  Score=79.55  Aligned_cols=58  Identities=36%  Similarity=0.471  Sum_probs=52.6

Q ss_pred             cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCC
Q psy16075          3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPAN   62 (241)
Q Consensus         3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~   62 (241)
                      .|+|+.|++||||+  |+|+.||+|+-|||+++.+..|.-++++|+.++....|+|++..
T Consensus        41 SiViSDVlpGGPAe--G~LQenDrvvMVNGvsMenv~haFAvQqLrksgK~A~ItvkRpr   98 (1027)
T KOG3580|consen   41 SIVISDVLPGGPAE--GLLQENDRVVMVNGVSMENVLHAFAVQQLRKSGKVAAITVKRPR   98 (1027)
T ss_pred             eEEEeeccCCCCcc--cccccCCeEEEEcCcchhhhHHHHHHHHHHhhccceeEEecccc
Confidence            58999999999998  77899999999999999999999999999977777788888753

>KOG3605|consensus

Probab=97.87  E-value=1e-05  Score=82.02  Aligned_cols=66  Identities=18%  Similarity=0.436  Sum_probs=56.7

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCC--cEEEEEecCCccccc
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSS--NLIITVKPANQRANM   67 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg--~VtLtV~p~~q~~~~   67 (241)
                      |.++|+.++++|||+++|.|-.||+|++|||.++.|+.+..++.+||+.+.  .|+|+|++.--..++
T Consensus       673 PTVViAnmm~~GpAarsgkLnIGDQiiaING~SLVGLPLstcQs~Ik~~KnQT~VkltiV~cpPV~~V  740 (829)
T KOG3605|consen  673 PTVVIANMMHGGPAARSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQTAVKLNIVSCPPVTTV  740 (829)
T ss_pred             hHHHHHhcccCChhhhcCCccccceeEeecCceeccccHHHHHHHHhcccccceEEEEEecCCCceEE
Confidence            567889999999999999999999999999999999999999999998765  477877765444444

>KOG3580|consensus

Probab=97.72  E-value=4.7e-05  Score=77.23  Aligned_cols=65  Identities=25%  Similarity=0.410  Sum_probs=58.9

Q ss_pred             cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCCccccc
Q psy16075          3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQRANM   67 (241)
Q Consensus         3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~q~~~~   67 (241)
                      .|||..+...|.|++.|-|+.||.||.|||+...+|++.++..+|..+.|++.|+|++..+..-+
T Consensus       220 qIFvKeit~~gLAardgnlqEGDiiLkINGtvteNmSLtDar~LIEkS~GKL~lvVlRD~~qtLi  284 (1027)
T KOG3580|consen  220 QIFVKEITRTGLAARDGNLQEGDIILKINGTVTENMSLTDARKLIEKSRGKLQLVVLRDSQQTLI  284 (1027)
T ss_pred             hhhhhhhcccchhhccCCcccccEEEEECcEeeccccchhHHHHHHhccCceEEEEEecCCceee
Confidence            48999999999999999889999999999999999999999999999999999999877554433

>KOG1892|consensus

Probab=97.67  E-value=4.9e-05  Score=80.05  Aligned_cols=60  Identities=27%  Similarity=0.493  Sum_probs=56.3

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecC
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA   61 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~   61 (241)
                      .||+|.+|++|++|+..|.|+.||.+|.|||+++.|.+.+.+..+|...+..|+|.|...
T Consensus       960 lGIYvKsVV~GgaAd~DGRL~aGDQLLsVdG~SLiGisQErAA~lmtrtg~vV~leVaKq 1019 (1629)
T KOG1892|consen  960 LGIYVKSVVEGGAADHDGRLEAGDQLLSVDGHSLIGISQERAARLMTRTGNVVHLEVAKQ 1019 (1629)
T ss_pred             cceEEEEeccCCccccccccccCceeeeecCcccccccHHHHHHHHhccCCeEEEehhhh
Confidence            599999999999999999999999999999999999999999999988888899999644

>KOG3651|consensus

Probab=97.66  E-value=0.00011  Score=69.73  Aligned_cols=58  Identities=28%  Similarity=0.443  Sum_probs=54.5

Q ss_pred             CCcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEE
Q psy16075          1 VPGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITV   58 (241)
Q Consensus         1 ~pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV   58 (241)
                      ||-++|.+|..++||++.|.++.||+|+.|||++|.|.+-.++.++|+...+.|.+.+
T Consensus        29 CPClYiVQvFD~tPAa~dG~i~~GDEi~avNg~svKGktKveVAkmIQ~~~~eV~Ihy   86 (429)
T KOG3651|consen   29 CPCLYIVQVFDKTPAAKDGRIRCGDEIVAVNGISVKGKTKVEVAKMIQVSLNEVKIHY   86 (429)
T ss_pred             CCeEEEEEeccCCchhccCccccCCeeEEecceeecCccHHHHHHHHHHhccceEEEe
Confidence            5789999999999999999999999999999999999999999999998888888865

>TIGR00054 RIP metalloprotease RseP

Probab=97.66  E-value=0.00012  Score=70.03  Aligned_cols=63  Identities=19%  Similarity=0.313  Sum_probs=53.3

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCCccccc
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQRANM   67 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~q~~~~   67 (241)
                      .|.+|..|.+++||+++|+ +.||+|++|||+++.  ++.++.+.+....+.+.+.+.+.++...+
T Consensus       128 ~g~~V~~V~~~SpA~~AGL-~~GDvI~~vng~~v~--~~~dl~~~ia~~~~~v~~~I~r~g~~~~l  190 (420)
T TIGR00054       128 VGPVIELLDKNSIALEAGI-EPGDEILSVNGNKIP--GFKDVRQQIADIAGEPMVEILAERENWTF  190 (420)
T ss_pred             CCceeeccCCCCHHHHcCC-CCCCEEEEECCEEcC--CHHHHHHHHHhhcccceEEEEEecCceEe
Confidence            4678999999999999998 999999999999999  88898888866667788888876655443

A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.

>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase

Probab=97.63  E-value=0.00011  Score=71.53  Aligned_cols=60  Identities=22%  Similarity=0.402  Sum_probs=49.0

Q ss_pred             EEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEe-cCCcccccccc
Q psy16075          6 ISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK-PANQRANMSVP   70 (241)
Q Consensus         6 Is~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~-p~~q~~~~~~~   70 (241)
                      |..|.++|+|+++|+ ++||+|++|||+++.  ++.++...+.  ...+.++|. +.++...+.+.
T Consensus         2 I~~V~pgSpAe~AGL-e~GD~IlsING~~V~--Dw~D~~~~l~--~e~l~L~V~~rdGe~~~l~Ie   62 (433)
T TIGR03279         2 ISAVLPGSIAEELGF-EPGDALVSINGVAPR--DLIDYQFLCA--DEELELEVLDANGESHQIEIE   62 (433)
T ss_pred             cCCcCCCCHHHHcCC-CCCCEEEEECCEECC--CHHHHHHHhc--CCcEEEEEEcCCCeEEEEEEe
Confidence            678999999999998 999999999999998  8999887774  346888886 56665555443

Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.

>KOG3571|consensus

Probab=97.61  E-value=0.00012  Score=72.90  Aligned_cols=75  Identities=23%  Similarity=0.411  Sum_probs=63.4

Q ss_pred             cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCC---CcEEEEEecC---CcccccccccCCCCC
Q psy16075          3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANS---SNLIITVKPA---NQRANMSVPRRGSYS   76 (241)
Q Consensus         3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsss---g~VtLtV~p~---~q~~~~~~~R~~~~~   76 (241)
                      ||||+.|++||+.+..|.+.+||-||+||.++..+++-+|++..|++.-   +.++|+|...   +...-+++||.-++-
T Consensus       278 gIYVgsImkgGAVA~DGRIe~GDMiLQVNevsFENmSNd~AVrvLREaV~~~gPi~ltvAk~~DP~~q~~fTipr~epvr  357 (626)
T KOG3571|consen  278 GIYVGSIMKGGAVALDGRIEPGDMILQVNEVSFENMSNDQAVRVLREAVSRPGPIKLTVAKCWDPNPQSYFTIPRGEPVR  357 (626)
T ss_pred             ceEEeeeccCceeeccCccCccceEEEeeecchhhcCchHHHHHHHHHhccCCCeEEEEeeccCCCCcccccCCCCCcCC
Confidence            7999999999999999999999999999999999999999999998853   4688888633   456667788875444


Q ss_pred             C
Q psy16075         77 R   77 (241)
Q Consensus        77 ~   77 (241)
                      +
T Consensus       358 P  358 (626)
T KOG3571|consen  358 P  358 (626)
T ss_pred             c
Confidence            3

>TIGR02860 spore_IV_B stage IV sporulation protein B

Probab=97.53  E-value=0.00036  Score=67.54  Aligned_cols=55  Identities=16%  Similarity=0.430  Sum_probs=47.9

Q ss_pred             CCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCC-cEEEEEecCCccccccc
Q psy16075         12 GGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSS-NLIITVKPANQRANMSV   69 (241)
Q Consensus        12 GSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg-~VtLtV~p~~q~~~~~~   69 (241)
                      ++||+++|+ ++||.|++|||+++.  +++++.++++...+ .+.++|.|.++...+.+
T Consensus       123 ~SPAa~AGL-q~GDiIvsING~~V~--s~~DL~~iL~~~~g~~V~LtV~R~Ge~~tv~V  178 (402)
T TIGR02860       123 HSPGEEAGI-QIGDRILKINGEKIK--NMDDLANLINKAGGEKLTLTIERGGKIIETVI  178 (402)
T ss_pred             CCHHHHcCC-CCCCEEEEECCEECC--CHHHHHHHHHhCCCCeEEEEEEECCEEEEEEE
Confidence            689999997 999999999999999  89999999987665 58899999887766654

SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.

>KOG3552|consensus

Probab=97.37  E-value=0.00022  Score=74.97  Aligned_cols=56  Identities=29%  Similarity=0.392  Sum_probs=51.7

Q ss_pred             cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEec
Q psy16075          3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKP   60 (241)
Q Consensus         3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p   60 (241)
                      .++|..|.+|||++  |.|++||+|+.|||.+|....++.|++++++.+..|.|+|+.
T Consensus        76 PviVr~VT~GGps~--GKL~PGDQIl~vN~Epv~daprervIdlvRace~sv~ltV~q  131 (1298)
T KOG3552|consen   76 PVIVRFVTEGGPSI--GKLQPGDQILAVNGEPVKDAPRERVIDLVRACESSVNLTVCQ  131 (1298)
T ss_pred             ceEEEEecCCCCcc--ccccCCCeEEEecCcccccccHHHHHHHHHHHhhhcceEEec
Confidence            47899999999998  667999999999999999999999999999999999998875

>KOG3605|consensus

Probab=97.36  E-value=5.8e-05  Score=76.78  Aligned_cols=62  Identities=23%  Similarity=0.450  Sum_probs=55.0

Q ss_pred             EEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCCccccc
Q psy16075          5 FISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQRANM   67 (241)
Q Consensus         5 fIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~q~~~~   67 (241)
                      +|-+++.||-|+|.|+ ++|.+|++|||++|....|+.++++|..+-|.|+++-.|....+-+
T Consensus       759 iICSLlRGGIAERGGV-RVGHRIIEINgQSVVA~pHekIV~lLs~aVGEIhMKTMPasMfRLL  820 (829)
T KOG3605|consen  759 IICSLLRGGIAERGGV-RVGHRIIEINGQSVVATPHEKIVQLLSNAVGEIHMKTMPAAMFRLL  820 (829)
T ss_pred             EeehhhcccchhccCc-eeeeeEEEECCceEEeccHHHHHHHHHHhhhhhhhhcchHHHHHHh
Confidence            5778999999999998 9999999999999999999999999998888999988887554433

>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]

Probab=97.15  E-value=0.0017  Score=59.90  Aligned_cols=64  Identities=22%  Similarity=0.415  Sum_probs=55.0

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCC-C-cEEEEEecCCcccccc
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANS-S-NLIITVKPANQRANMS   68 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsss-g-~VtLtV~p~~q~~~~~   68 (241)
                      .|++|..+.+++||+++|+ +.||.|+++||+++.  +..+....+.... + .+.+.+.+.++..+++
T Consensus       270 ~G~~V~~v~~~spa~~agi-~~Gdii~~vng~~v~--~~~~l~~~v~~~~~g~~v~~~~~r~g~~~~~~  335 (347)
T COG0265         270 AGAVVLGVLPGSPAAKAGI-KAGDIITAVNGKPVA--SLSDLVAAVASNRPGDEVALKLLRGGKERELA  335 (347)
T ss_pred             CceEEEecCCCChHHHcCC-CCCCEEEEECCEEcc--CHHHHHHHHhccCCCCEEEEEEEECCEEEEEE
Confidence            4789999999999999998 899999999999999  8888888886655 3 5888888887776664

>KOG3129|consensus

Probab=97.05  E-value=0.002  Score=58.16  Aligned_cols=66  Identities=24%  Similarity=0.413  Sum_probs=52.6

Q ss_pred             cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCC-CHHHHHHHHHhCCC-cEEEEEecCCccccccc
Q psy16075          3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGK-SLDQVTDMMVANSS-NLIITVKPANQRANMSV   69 (241)
Q Consensus         3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~gl-shdeVv~LLKsssg-~VtLtV~p~~q~~~~~~   69 (241)
                      -++|..|.++|||+++|+ ++||.|+.+.++.-.+. .+.++....+.+.+ .+.++|.+.++.-.+.+
T Consensus       140 Fa~V~sV~~~SPA~~aGl-~~gD~il~fGnV~sgn~~~lq~i~~~v~~~e~~~v~v~v~R~g~~v~L~l  207 (231)
T KOG3129|consen  140 FAVVDSVVPGSPADEAGL-CVGDEILKFGNVHSGNFLPLQNIAAVVQSNEDQIVSVTVIREGQKVVLSL  207 (231)
T ss_pred             eEEEeecCCCChhhhhCc-ccCceEEEecccccccchhHHHHHHHHHhccCcceeEEEecCCCEEEEEe
Confidence            478999999999999998 99999999988766543 47777777776665 58899998887655543

>KOG3542|consensus

Probab=96.98  E-value=0.00064  Score=70.11  Aligned_cols=58  Identities=33%  Similarity=0.548  Sum_probs=50.6

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecC
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA   61 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~   61 (241)
                      .||||..|.||+.|++.|+ +.||+|++|||+...+.+...+.++|++ .-.+.|+|+-+
T Consensus       562 fgifV~~V~pgskAa~~Gl-KRgDqilEVNgQnfenis~~KA~eiLrn-nthLtltvKtN  619 (1283)
T KOG3542|consen  562 FGIFVAEVFPGSKAAREGL-KRGDQILEVNGQNFENISAKKAEEILRN-NTHLTLTVKTN  619 (1283)
T ss_pred             ceeEEeeecCCchHHHhhh-hhhhhhhhccccchhhhhHHHHHHHhcC-CceEEEEEecc
Confidence            3899999999999999998 9999999999999999999999999974 44566666543

>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A

Probab=96.93  E-value=0.0032  Score=49.13  Aligned_cols=58  Identities=22%  Similarity=0.396  Sum_probs=39.7

Q ss_pred             cEEEEEEcCC--------CHHhhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHhCCC-cEEEEEecCC
Q psy16075          3 GIFISRLVPG--------GLAESTGL-LAVNDEVLEVNGILVAGKSLDQVTDMMVANSS-NLIITVKPAN   62 (241)
Q Consensus         3 GIfIs~VvpG--------SpAerAGL-LqvGD~ILeINGqsV~glshdeVv~LLKsssg-~VtLtV~p~~   62 (241)
                      +..|.+|.+|        ||..+.|+ +++||.|++|||+++.  .-.+...+|....+ .|.|+|.+..
T Consensus        13 ~y~I~~I~~gd~~~~~~~sPL~~pGv~v~~GD~I~aInG~~v~--~~~~~~~lL~~~agk~V~Ltv~~~~   80 (88)
T PF14685_consen   13 GYRIARIYPGDPWNPNARSPLAQPGVDVREGDYILAINGQPVT--ADANPYRLLEGKAGKQVLLTVNRKP   80 (88)
T ss_dssp             EEEEEEE-BS-TTSSS-B-GGGGGS----TT-EEEEETTEE-B--TTB-HHHHHHTTTTSEEEEEEE-ST
T ss_pred             EEEEEEEeCCCCCCccccCCccCCCCCCCCCCEEEEECCEECC--CCCCHHHHhcccCCCEEEEEEecCC
Confidence            4568888886        77777774 4799999999999998  56678888887776 5888988654

>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous

Probab=96.23  E-value=0.017  Score=48.35  Aligned_cols=56  Identities=25%  Similarity=0.395  Sum_probs=42.9

Q ss_pred             cEEEEEEcCCCHHhhhCCCCC-CCEEEEECCEEcCCCCHHHHHHHHHhCCC-cEEEEEecC
Q psy16075          3 GIFISRLVPGGLAESTGLLAV-NDEVLEVNGILVAGKSLDQVTDMMVANSS-NLIITVKPA   61 (241)
Q Consensus         3 GIfIs~VvpGSpAerAGLLqv-GD~ILeINGqsV~glshdeVv~LLKsssg-~VtLtV~p~   61 (241)
                      +.-|.+|.|+|||++||| ++ .|.|+.+++..+.  ..+++.++++...+ .+.|.|-..
T Consensus        44 ~~~Vl~V~p~SPA~~AGL-~p~~DyIig~~~~~l~--~~~~l~~~v~~~~~~~l~L~Vyns  101 (138)
T PF04495_consen   44 GWHVLRVAPNSPAAKAGL-EPFFDYIIGIDGGLLD--DEDDLFELVEANENKPLQLYVYNS  101 (138)
T ss_dssp             EEEEEEE-TTSHHHHTT---TTTEEEEEETTCE----STCHHHHHHHHTTTS-EEEEEEET
T ss_pred             eEEEeEecCCCHHHHCCc-cccccEEEEccceecC--CHHHHHHHHHHcCCCcEEEEEEEC
Confidence            567899999999999998 66 7999999998888  67899999988776 588888643

GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.

>PRK09681 putative type II secretion protein GspC; Provisional

Probab=96.21  E-value=0.019  Score=53.36  Aligned_cols=61  Identities=16%  Similarity=0.214  Sum_probs=47.6

Q ss_pred             EEEEEcCCCHH---hhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCC--CcEEEEEecCCcccccc
Q psy16075          5 FISRLVPGGLA---ESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANS--SNLIITVKPANQRANMS   68 (241)
Q Consensus         5 fIs~VvpGSpA---erAGLLqvGD~ILeINGqsV~glshdeVv~LLKsss--g~VtLtV~p~~q~~~~~   68 (241)
                      .=-+|.||..+   .++|+ +.||.+++|||+++.  ..+++.++++.-.  ..+.|+|.|.++..++.
T Consensus       207 ~GYrl~Pgkd~~lF~~~GL-q~GDva~sING~dL~--D~~qa~~l~~~L~~~tei~ltVeRdGq~~~i~  272 (276)
T PRK09681        207 VGYAVKPGADRSLFDASGF-KEGDIAIALNQQDFT--DPRAMIALMRQLPSMDSIQLTVLRKGARHDIS  272 (276)
T ss_pred             eEEEECCCCcHHHHHHcCC-CCCCEEEEeCCeeCC--CHHHHHHHHHHhccCCeEEEEEEECCEEEEEE
Confidence            34467777554   37787 999999999999998  7787777776544  36999999999876653

>KOG1738|consensus

Probab=95.91  E-value=0.016  Score=59.05  Aligned_cols=57  Identities=23%  Similarity=0.272  Sum_probs=50.9

Q ss_pred             EEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEec
Q psy16075          4 IFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKP   60 (241)
Q Consensus         4 IfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p   60 (241)
                      .+|+.+.+++||++.+.+..||+|+.||++-|.|..+.-+++-++.....|.++|+.
T Consensus       227 h~~s~~~e~Spad~~~kI~dgdEv~qiN~qtvVgwqlk~vV~sL~~~~sgi~l~lkK  283 (638)
T KOG1738|consen  227 HVTSKIFEQSPADYRQKILDGDEVLQINEQTVVGWQLKVVVSSLRETPAGIELTLKK  283 (638)
T ss_pred             eeccccccCChHHHhhcccCccceeeecccccccchhHhHHhhcccCcccceeeeec
Confidence            568889999999999988999999999999999999999999998777778777763

>KOG1320|consensus

Probab=95.63  E-value=0.031  Score=55.39  Aligned_cols=63  Identities=22%  Similarity=0.451  Sum_probs=53.1

Q ss_pred             cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCC--cEEEEEecCCcccccc
Q psy16075          3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSS--NLIITVKPANQRANMS   68 (241)
Q Consensus         3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg--~VtLtV~p~~q~~~~~   68 (241)
                      +++|+.|.++++++..++ +.||.|+.|||++|.  ...++..++.....  .|.++..+..+..++.
T Consensus       399 ~v~is~Vlp~~~~~~~~~-~~g~~V~~vng~~V~--n~~~l~~~i~~~~~~~~v~vl~~~~~e~~tl~  463 (473)
T KOG1320|consen  399 LVLVSQVLPGSINGGYGL-KPGDQVVKVNGKPVK--NLKHLYELIEECSTEDKVAVLDRRSAEDATLE  463 (473)
T ss_pred             EEEEEEeccCCCcccccc-cCCCEEEEECCEEee--chHHHHHHHHhcCcCceEEEEEecCccceeEE
Confidence            688999999999999987 999999999999999  67888899977664  6777777777766553

>KOG3938|consensus

Probab=95.42  E-value=0.018  Score=54.01  Aligned_cols=68  Identities=19%  Similarity=0.301  Sum_probs=53.8

Q ss_pred             EEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCC--cEEEEEecCCccccccccc
Q psy16075          4 IFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSS--NLIITVKPANQRANMSVPR   71 (241)
Q Consensus         4 IfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg--~VtLtV~p~~q~~~~~~~R   71 (241)
                      .||.+|.+||.-++--.+++||.|=+|||++|.|+.|.||..+||....  ..++.+...........+|
T Consensus       151 AFIKrIkegsvidri~~i~VGd~IEaiNge~ivG~RHYeVArmLKel~rge~ftlrLiePk~af~~~~~r  220 (334)
T KOG3938|consen  151 AFIKRIKEGSVIDRIEAICVGDHIEAINGESIVGKRHYEVARMLKELPRGETFTLRLIEPKSAFDGIGQR  220 (334)
T ss_pred             eeeEeecCCchhhhhhheeHHhHHHhhcCccccchhHHHHHHHHHhcccCCeeEEEeeccccccCccccc
Confidence            6899999999999887779999999999999999999999999998654  3455554334444444433

>KOG0606|consensus

Probab=95.29  E-value=0.025  Score=60.86  Aligned_cols=53  Identities=21%  Similarity=0.342  Sum_probs=47.4

Q ss_pred             EEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEE
Q psy16075          5 FISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITV   58 (241)
Q Consensus         5 fIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV   58 (241)
                      .+..|.+|+||..+|+ ..+|.|..|||++|.++.|.|+++++-+.+.++.+.+
T Consensus       661 ~v~sv~egsPA~~agl-s~~DlIthvnge~v~gl~H~ev~~Lll~~gn~v~~~t  713 (1205)
T KOG0606|consen  661 SVGSVEEGSPAFEAGL-SAGDLITHVNGEPVHGLVHTEVMELLLKSGNKVTLRT  713 (1205)
T ss_pred             eeeeecCCCCccccCC-CccceeEeccCcccchhhHHHHHHHHHhcCCeeEEEe
Confidence            5778999999999998 9999999999999999999999999976666666655

>KOG1421|consensus

Probab=94.98  E-value=0.055  Score=56.25  Aligned_cols=61  Identities=21%  Similarity=0.418  Sum_probs=52.1

Q ss_pred             EEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCC-cEEEEEecCCcccccc
Q psy16075          4 IFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSS-NLIITVKPANQRANMS   68 (241)
Q Consensus         4 IfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg-~VtLtV~p~~q~~~~~   68 (241)
                      +++..|.++|||++.  |++||.++.||+..+.  ...++-+++.+..| .+.|+|.+.++..++.
T Consensus       305 LvV~~vL~~gpa~k~--Le~GDillavN~t~l~--df~~l~~iLDegvgk~l~LtI~Rggqelel~  366 (955)
T KOG1421|consen  305 LVVETVLPEGPAEKK--LEPGDILLAVNSTCLN--DFEALEQILDEGVGKNLELTIQRGGQELELT  366 (955)
T ss_pred             EEEEEeccCCchhhc--cCCCcEEEEEcceehH--HHHHHHHHHhhccCceEEEEEEeCCEEEEEE
Confidence            568899999999984  6999999999998888  78888888876665 6899999998876664

>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]

Probab=94.96  E-value=0.077  Score=50.65  Aligned_cols=55  Identities=18%  Similarity=0.398  Sum_probs=47.6

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCC--cEEEEEec
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSS--NLIITVKP   60 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg--~VtLtV~p   60 (241)
                      .|+++..+..++++.  |.|+.||.|++|||+++.  +.+|+.+.+++.+.  .|++.+.+
T Consensus       130 ~gvyv~~v~~~~~~~--gkl~~gD~i~avdg~~f~--s~~e~i~~v~~~k~Gd~VtI~~~r  186 (342)
T COG3480         130 AGVYVLSVIDNSPFK--GKLEAGDTIIAVDGEPFT--SSDELIDYVSSKKPGDEVTIDYER  186 (342)
T ss_pred             eeEEEEEccCCcchh--ceeccCCeEEeeCCeecC--CHHHHHHHHhccCCCCeEEEEEEe
Confidence            388999999999986  567999999999999999  99999999976553  68888875

>cd06403 PB1_Par6 The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells

Probab=94.42  E-value=0.0041  Score=48.27  Aligned_cols=31  Identities=26%  Similarity=0.294  Sum_probs=27.0

Q ss_pred             eecccCCCCcccceeeeEEEEEeecccccchhcccccchhhhhhhhh
Q psy16075        116 ICRIEPSTNSDIFERTKIVFVFTMLSKTTKWMSDMNGHALRILARES  162 (241)
Q Consensus       116 ~~~~~p~t~s~~~~~~~i~~~~~~~~~~~~~~~~~~~~~lrl~~~~~  162 (241)
                      --|++|+||+++|.++.-       +         +.|+|||++|+.
T Consensus        50 ~gDLLPInNDdNf~kAls-------s---------a~plLRl~iqrk   80 (80)
T cd06403          50 HGDLLPINNDDNFLKALS-------S---------ANPLLRIFIQRR   80 (80)
T ss_pred             CCCEecccCcHHHHHHHH-------c---------CCCceEEEEEcC
Confidence            368999999999999865       5         899999999874

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The

>KOG3532|consensus

Probab=94.34  E-value=0.11  Score=54.17  Aligned_cols=54  Identities=17%  Similarity=0.322  Sum_probs=47.6

Q ss_pred             EEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEec
Q psy16075          4 IFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKP   60 (241)
Q Consensus         4 IfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p   60 (241)
                      +-|-.|.++++|.++.+ ++||++++|||++|.  +..++...++...+.|..++.+
T Consensus       400 v~v~tv~~ns~a~k~~~-~~gdvlvai~~~pi~--s~~q~~~~~~s~~~~~~~l~~~  453 (1051)
T KOG3532|consen  400 VKVCTVEDNSLADKAAF-KPGDVLVAINNVPIR--SERQATRFLQSTTGDLTVLVER  453 (1051)
T ss_pred             EEEEEecCCChhhHhcC-CCcceEEEecCccch--hHHHHHHHHHhcccceEEEEee
Confidence            45788999999999997 899999999999999  9999999999888887765543

>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]

Probab=93.78  E-value=0.1  Score=52.56  Aligned_cols=56  Identities=25%  Similarity=0.372  Sum_probs=38.9

Q ss_pred             cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCCccccc
Q psy16075          3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQRANM   67 (241)
Q Consensus         3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~q~~~~   67 (241)
                      +..|..|.++|||++||+ .+||+|+.|||.+-.   +++     -..+..+.+.+.+.++-.++
T Consensus       463 ~~~i~~V~~~gPA~~AGl-~~Gd~ivai~G~s~~---l~~-----~~~~d~i~v~~~~~~~L~e~  518 (558)
T COG3975         463 HEKITFVFPGGPAYKAGL-SPGDKIVAINGISDQ---LDR-----YKVNDKIQVHVFREGRLREF  518 (558)
T ss_pred             eeEEEecCCCChhHhccC-CCccEEEEEcCcccc---ccc-----cccccceEEEEccCCceEEe
Confidence            468999999999999998 999999999998221   111     01233556666665554444

>PF12812 PDZ_1: PDZ-like domain

Probab=93.01  E-value=0.33  Score=36.86  Aligned_cols=46  Identities=22%  Similarity=0.227  Sum_probs=38.3

Q ss_pred             cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCC
Q psy16075          3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANS   51 (241)
Q Consensus         3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsss   51 (241)
                      |+++.....|+++...|+ ..|-.|.+|||+++.  +++++.+.+++..
T Consensus        31 ~gv~v~~~~g~~~~~~~i-~~g~iI~~Vn~kpt~--~Ld~f~~vvk~ip   76 (78)
T PF12812_consen   31 GGVYVAVSGGSLAFAGGI-SKGFIITSVNGKPTP--DLDDFIKVVKKIP   76 (78)
T ss_pred             CEEEEEecCCChhhhCCC-CCCeEEEeECCcCCc--CHHHHHHHHHhCC
Confidence            345556678888888776 999999999999999  9999999998654

>COG3031 PulC Type II secretory pathway, component PulC [Intracellular trafficking and secretion]

Probab=92.86  E-value=0.26  Score=45.71  Aligned_cols=57  Identities=18%  Similarity=0.243  Sum_probs=44.9

Q ss_pred             EEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCC--CcEEEEEecCCccccc
Q psy16075          8 RLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANS--SNLIITVKPANQRANM   67 (241)
Q Consensus         8 ~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsss--g~VtLtV~p~~q~~~~   67 (241)
                      ....++.-+..|+ +.||..++||+.++.  ..+++..+|+...  ..+.++|.+.+++..+
T Consensus       213 pgkd~slF~~sgl-q~GDIavaiNnldlt--dp~~m~~llq~l~~m~s~qlTv~R~G~rhdI  271 (275)
T COG3031         213 PGKDGSLFYKSGL-QRGDIAVAINNLDLT--DPEDMFRLLQMLRNMPSLQLTVIRRGKRHDI  271 (275)
T ss_pred             CCCCcchhhhhcC-CCcceEEEecCcccC--CHHHHHHHHHhhhcCcceEEEEEecCcccee
Confidence            3344566677787 999999999999999  7888888887543  4789999998887654

>KOG4407|consensus

Probab=89.38  E-value=0.18  Score=55.60  Aligned_cols=60  Identities=28%  Similarity=0.421  Sum_probs=52.5

Q ss_pred             CCcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecC
Q psy16075          1 VPGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA   61 (241)
Q Consensus         1 ~pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~   61 (241)
                      |..+||..|++++||..+-| +-||+|+.||.+++.++...+++.+++.+...+.+-|.|.
T Consensus       142 ~eT~~~~eV~~n~~~~~a~L-Q~~~~V~~v~~q~~A~i~~s~~~S~~~qt~~~~~~~~~P~  201 (1973)
T KOG4407|consen  142 METIFIKEVQANGPAHYANL-QTGDRVLMVNNQPIAGIAYSTIVSMIKQTPAVLTLHVVPK  201 (1973)
T ss_pred             hhhhhhhhhccCChhHHHhh-hccceeEEeecCcccchhhhhhhhhhccCCCCCCceeccc
Confidence            34689999999999999986 9999999999999999999999999998777666666543

>COG0750 Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]

Probab=88.98  E-value=1.7  Score=40.05  Aligned_cols=52  Identities=33%  Similarity=0.457  Sum_probs=42.9

Q ss_pred             EEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCC-c---EEEEEec
Q psy16075          6 ISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSS-N---LIITVKP   60 (241)
Q Consensus         6 Is~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg-~---VtLtV~p   60 (241)
                      +..+..+++|+.+|+ +.||+++++|+..+.  +++++..++....+ .   +.+.+.+
T Consensus       133 ~~~v~~~s~a~~a~l-~~Gd~iv~~~~~~i~--~~~~~~~~~~~~~~~~~~~~~i~~~~  188 (375)
T COG0750         133 VGEVAPKSAAALAGL-RPGDRIVAVDGEKVA--SWDDVRRLLVAAAGDVFNLLTILVIR  188 (375)
T ss_pred             eeecCCCCHHHHcCC-CCCCEEEeECCEEcc--CHHHHHHHHHhccCCcccceEEEEEe
Confidence            446889999999998 999999999999999  88998888866544 3   4666666

>KOG3834|consensus

Probab=85.77  E-value=1.3  Score=43.95  Aligned_cols=58  Identities=26%  Similarity=0.378  Sum_probs=49.1

Q ss_pred             cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecC
Q psy16075          3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA   61 (241)
Q Consensus         3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~   61 (241)
                      |.-|.+|.++++|+++|+.---|-|++|||..+. ..-+.+..+++.+..+|+++|...
T Consensus        16 g~hvlkVqedSpa~~aglepffdFIvSI~g~rL~-~dnd~Lk~llk~~sekVkltv~n~   73 (462)
T KOG3834|consen   16 GYHVLKVQEDSPAHKAGLEPFFDFIVSINGIRLN-KDNDTLKALLKANSEKVKLTVYNS   73 (462)
T ss_pred             eEEEEEeecCChHHhcCcchhhhhhheeCccccc-CchHHHHHHHHhcccceEEEEEec
Confidence            5668899999999999997778999999999995 567778888888877898888643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	241
1x8s_A	102	Structure Of The Par-6 Pdz Domain With A Pals1 Inte		2e-28
1ry4_A	128	Nmr Structure Of The Crib-Pdz Module Of Par-6 Lengt		2e-28
2lc6_A	128	Solution Structure Of Par-6 Q144cL164C Length = 128		2e-28
1nf3_C	128	Structure Of Cdc42 In A Complex With The Gtpase-Bin		2e-27
1rzx_A	98	Crystal Structure Of A Par-6 Pdz-Peptide Complex Le		5e-27
1va8_A	113	Solution Structure Of The Pdz Domain Of Pals1 Prote		4e-07
2dkr_A	93	Solution Structure Of The Pdz Domain From Human Lin		5e-05
1ujd_A	117	Solution Structure Of Rsgi Ruh-003, A Pdz Domain Of		1e-04
3qe1_A	107	Crystal Structure Of Pdz Domain Of Sorting Nexin 27		2e-04
3qdo_A	109	Crystal Structure Of Pdz Domain Of Sorting Nexin 27		2e-04
3qgl_A	101	Crystal Structure Of Pdz Domain Of Sorting Nexin 27		2e-04
1wha_A	105	Solution Structure Of The Second Pdz Domain Of Huma		3e-04
2dlu_A	111	Solution Structure Of The Second Pdz Domain Of Huma		3e-04
1kwa_A	88	Human CaskLIN-2 Pdz Domain Length = 88		3e-04
3o46_A	93	Crystal Structure Of The Pdz Domain Of Mpp7 Length		8e-04

>pdb|1X8S|A Chain A, Structure Of The Par-6 Pdz Domain With A Pals1 Internal Ligand Length = 102

Iteration: 1
 Score =  122 bits (306), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 60/63 (95%), Positives = 62/63 (98%)
Query: 2   PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61
           PGIFISRLVPGGLAESTGLLAVNDEV+EVNGI VAGK+LDQVTDMMVANSSNLIITVKPA
Sbjct: 40  PGIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQVTDMMVANSSNLIITVKPA 99
Query: 62  NQR 64
           NQR
Sbjct: 100 NQR 102

>pdb|1RY4|A Chain A, Nmr Structure Of The Crib-Pdz Module Of Par-6 Length = 128

Iteration: 1
 Score =  122 bits (306), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 60/63 (95%), Positives = 62/63 (98%)
Query: 2   PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61
           PGIFISRLVPGGLAESTGLLAVNDEV+EVNGI VAGK+LDQVTDMMVANSSNLIITVKPA
Sbjct: 66  PGIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQVTDMMVANSSNLIITVKPA 125
Query: 62  NQR 64
           NQR
Sbjct: 126 NQR 128

>pdb|2LC6|A Chain A, Solution Structure Of Par-6 Q144cL164C Length = 128

Iteration: 1
 Score =  122 bits (305), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 60/63 (95%), Positives = 62/63 (98%)
Query: 2   PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61
           PGIFISRLVPGGLAESTGLLAVNDEV+EVNGI VAGK+LDQVTDMMVANSSNLIITVKPA
Sbjct: 66  PGIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQVTDMMVANSSNLIITVKPA 125
Query: 62  NQR 64
           NQR
Sbjct: 126 NQR 128

>pdb|1NF3|C Chain C, Structure Of Cdc42 In A Complex With The Gtpase-Binding Domain Of The Cell Polarity Protein, Par6 Length = 128

Iteration: 1
 Score =  119 bits (298), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 58/64 (90%), Positives = 62/64 (96%)
Query: 1   VPGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKP 60
           VPGIFISRLVPGGLA+STGLLAVNDEVLEVNGI V+GKSLDQVTDMM+ANS NLIITV+P
Sbjct: 64  VPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRP 123
Query: 61  ANQR 64
           ANQR
Sbjct: 124 ANQR 127

>pdb|1RZX|A Chain A, Crystal Structure Of A Par-6 Pdz-Peptide Complex Length = 98

Iteration: 1
 Score =  117 bits (293), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 58/61 (95%), Positives = 60/61 (98%)
Query: 2  PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61
          PGIFISRLVPGGLAESTGLLAVNDEV+EVNGI VAGK+LDQVTDMMVANSSNLIITVKPA
Sbjct: 38 PGIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQVTDMMVANSSNLIITVKPA 97
Query: 62 N 62
          N
Sbjct: 98 N 98

>pdb|1VA8|A Chain A, Solution Structure Of The Pdz Domain Of Pals1 Protein Length = 113

Iteration: 1
 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 38/59 (64%)
Query: 4   IFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPAN 62
           + ISR+V GG AE +GLL   DEVLE+NGI + GK +++V D++      L   + P++
Sbjct: 50  VIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMHGTLTFVLIPSS 108

>pdb|2DKR|A Chain A, Solution Structure Of The Pdz Domain From Human Lin-7 Homolog B Length = 93

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 37/56 (66%)
Query: 4  IFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
          I+ISR++PGG+A+  G L   D++L VNG+ V G+  ++  +++ A   ++ + V+
Sbjct: 32 IYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKAAQGSVKLVVR 87

>pdb|1UJD|A Chain A, Solution Structure Of Rsgi Ruh-003, A Pdz Domain Of Hypothetical Kiaa0559 Protein From Human Cdna Length = 117

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 3   GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPAN 62
           G +I++++PGG AE TG L    +VLE NGI +  K+ ++V  ++   S    I V+   
Sbjct: 50  GAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQSIISQQSGEAEICVR--- 106
Query: 63  QRANMSVPRRG 73
              NMS P  G
Sbjct: 107 LDLNMSGPSSG 117

>pdb|3QDO|A Chain A, Crystal Structure Of Pdz Domain Of Sorting Nexin 27 (Snx27) Fused To The Gly-Gly Linker Followed By C-Terminal (Eseskv) Of Girk3 Length = 109

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 6  ISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITV 58
          +S ++PGG A+  G+    D +LEVNG+ V G +  QV D++ A    LI+TV
Sbjct: 47 VSAVLPGGAADRAGVRK-GDRILEVNGVNVEGATHKQVVDLIRAGEKELILTV 98

>pdb|3QGL|A Chain A, Crystal Structure Of Pdz Domain Of Sorting Nexin 27 (Snx27) In Complex With The Eseskv Peptide Corresponding To The C-Terminal Tail Of Girk3 Length = 101

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 6  ISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITV 58
          +S ++PGG A+  G+    D +LEVNG+ V G +  QV D++ A    LI+TV
Sbjct: 47 VSAVLPGGAADRAGVRK-GDRILEVNGVNVEGATHKQVVDLIRAGEKELILTV 98

>pdb|1WHA|A Chain A, Solution Structure Of The Second Pdz Domain Of Human Scribble (Kiaa0147 Protein) Length = 105

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 30/57 (52%)
Query: 3  GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
          GIF+SR+  GG A   G L V D VL +NG+ V     D    ++ A S  + + ++
Sbjct: 39 GIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLLTAASPTIALLLE 95

>pdb|2DLU|A Chain A, Solution Structure Of The Second Pdz Domain Of Human Inad- Like Protein Length = 111

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 3   GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMM--VANSSNLIITVKP 60
           G+ +  +VPGGLA+  G L   D +L++ G  V G + +QV  ++    NS  +++   P
Sbjct: 39  GVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGMTSEQVAQVLRNCGNSVRMLVARDP 98
Query: 61  ANQRANMSVPRRG 73
           A   +  S P  G
Sbjct: 99  AGDISVTSGPSSG 111

>pdb|1KWA|A Chain A, Human CaskLIN-2 Pdz Domain Length = 88

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 17/57 (29%), Positives = 34/57 (59%)
Query: 5  FISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61
           ++R++ GG+    G L V DE+ E+NGI VA ++++Q+  M+     ++   + P+
Sbjct: 28 IVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPS 84

>pdb|3O46|A Chain A, Crystal Structure Of The Pdz Domain Of Mpp7 Length = 93

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 35/60 (58%)
Query: 4  IFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQ 63
          I ++R+  GG A+ +GL+ V DE+ EVNGI V  K  +++  ++  +   +   + P ++
Sbjct: 30 IIVARIXRGGAADRSGLIHVGDELREVNGIPVEDKRPEEIIQILAQSQGAITFKIIPGSK 89

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	241
1nf3_C	128	PAR-6B; semi-CRIB motif, switch I and II, PDZ doma	7e-24
3o46_A	93	Maguk P55 subfamily member 7; PDZ domain, structur	6e-20
1va8_A	113	Maguk P55 subfamily member 5; PDZ domain, palmitoy	6e-20
2ejy_A	97	55 kDa erythrocyte membrane protein; GPC, maguk, P	1e-18
1kwa_A	88	Hcask/LIN-2 protein; PDZ domain, neurexin, syndeca	7e-18
3qe1_A	107	Sorting nexin-27, G protein-activated inward RECT	7e-15
1v62_A	117	KIAA1719 protein; structural genomics, synaptic tr	8e-14
1ujd_A	117	KIAA0559 protein; PDZ domain, structural genomics,	8e-14
2e7k_A	91	Maguk P55 subfamily member 2; PDZ domain, MPP2 pro	1e-13
2la8_A	106	Inactivation-NO-after-potential D protein, KON-TI	5e-13
1n7e_A	97	AMPA receptor interacting protein GRIP; PDZ, prote	7e-13
2yt7_A	101	Amyloid beta A4 precursor protein-binding family A	8e-13
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	4e-12
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	5e-11
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	3e-06
2d8i_A	114	T-cell lymphoma invasion and metastasis 1 variant;	5e-12
1qav_A	90	Alpha-1 syntrophin (residues 77-171); beta-finger,	5e-12
2qkv_A	96	Inactivation-NO-after-potential D protein; PDZ dom	5e-12
2vwr_A	95	Ligand of NUMB protein X 2; protein-binding, metal	6e-12
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	9e-12
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	3e-11
2dmz_A	129	INAD-like protein; PDZ domain, inadl protein, hina	9e-12
1uew_A	114	Membrane associated guanylate kinase inverted-2 (M	1e-11
1uep_A	103	Membrane associated guanylate kinase inverted-2 (M	2e-11
2dkr_A	93	LIN-7 homolog B; LIN-7B, PDZ, structural genomics,	2e-11
3hpk_A	125	Protein interacting with PRKCA 1; oxidized, PDZ do	2e-11
1ihj_A	98	INAD; intermolecular disulfide bond, PDZ domain, s	3e-11
1b8q_A	127	Protein (neuronal nitric oxide synthase); PDZ doma	4e-11
2i04_A	85	Membrane-associated guanylate kinase, WW and PDZ d	4e-11
2djt_A	104	Unnamed protein product; PDZ domain, structural ge	4e-11
2dc2_A	103	GOPC, golgi associated PDZ and coiled-coil motif c	4e-11
2g5m_B	113	Neurabin-2; spinophilin, PDZ domain, CNS, synaptic	5e-11
2dlu_A	111	INAD-like protein; PDZ domain, inadl protein, hina	5e-11
2lob_A	112	Golgi-associated PDZ and coiled-coil motif-contai	5e-11
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	6e-11
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	4e-08
2qg1_A	92	Multiple PDZ domain protein; MPDZ, MUPP1, structur	6e-11
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	7e-11
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	7e-11
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	7e-11
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	2e-10
2i1n_A	102	Discs, large homolog 3; DLG3, PDZ, PDZ domain, sig	7e-11
2r4h_A	112	Membrane-associated guanylate kinase, WW and PDZ c	8e-11
2awx_A	105	Synapse associated protein 97; membrane protein, s	8e-11
1i16_A	130	Interleukin 16, LCF; cytokine, lymphocyte chemoatt	9e-11
3i4w_A	104	Disks large homolog 4; alpha and beta protein, alt	9e-11
2iwo_A	120	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	1e-10
2kpk_A	129	Membrane-associated guanylate kinase, WW and PDZ c	1e-10
2d92_A	108	INAD-like protein; PDZ domain, inadl protein, hina	1e-10
3cyy_A	92	Tight junction protein ZO-1; protein-ligand comple	1e-10
3gge_A	95	PDZ domain-containing protein GIPC2; structural ge	1e-10
3e17_A	88	Tight junction protein ZO-2; domain swapping, alte	1e-10
2q9v_A	90	Membrane-associated guanylate kinase, WW and PDZ c	1e-10
1wfg_A	131	Regulating synaptic membrane exocytosis protein 2;	2e-10
2eaq_A	90	LIM domain only protein 7; conserved hypothetical	2e-10
2gzv_A	114	PRKCA-binding protein; protein kinase C, PDZ domai	2e-10
2rcz_A	81	Tight junction protein ZO-1; PDZ, domain-swapping,	2e-10
1qau_A	112	Neuronal nitric oxide synthase (residues 1-130); b	2e-10
1rgw_A	85	ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK,	2e-10
2h2b_A	107	Tight junction protein ZO-1; PDZ domain, phage der	3e-10
1wha_A	105	KIAA0147 protein, scribble; PDZ domain, cellular s	3e-10
1d5g_A	96	Human phosphatase HPTP1E; protein-peptide complex,	3e-10
1v6b_A	118	Harmonin isoform A1; structural genomics, usher sy	3e-10
1v5q_A	122	GRIP1 homolog, glutamate receptor interacting prot	4e-10
1ueq_A	123	Membrane associated guanylate kinase inverted-2 (M	4e-10
1um1_A	110	KIAA1849 protein, RSGI RUH-007; PDZ domain, human	4e-10
1tp5_A	119	Presynaptic density protein 95; PDZ-peptide ligand	4e-10
2eno_A	120	Synaptojanin-2-binding protein; mitochondrial oute	4e-10
3axa_A	106	Afadin, nectin-3, protein AF-6; PDZ domain, fusion	4e-10
2koj_A	111	Partitioning defective 3 homolog; PDZ domain, stru	4e-10
2jik_A	101	Synaptojanin-2 binding protein; transmembrane, out	6e-10
1wfv_A	103	Membrane associated guanylate kinase inverted-2; a	6e-10
2jil_A	97	GRIP1 protein, glutamate receptor interacting prot	6e-10
1q7x_A	108	PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, str	7e-10
1v5l_A	103	PDZ and LIM domain 3; actinin alpha 2 associated L	7e-10
2iwn_A	97	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	7e-10
1um7_A	113	Synapse-associated protein 102; PDZ, discs large h	7e-10
1wif_A	126	RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, s	8e-10
2kom_A	121	Partitioning defective 3 homolog; PAR-3B, PDZ doma	8e-10
2ehr_A	117	INAD-like protein; PDZ domain, inadl protein, hina	8e-10
1g9o_A	91	NHE-RF; PDZ domain, complex, signaling protein; 1.	8e-10
1x6d_A	119	Interleukin-16; PDZ domain, lymphocyte chemoattrac	8e-10
2fcf_A	103	Multiple PDZ domain protein; adaptor molecule, pro	9e-10
2eeg_A	94	PDZ and LIM domain protein 4; PDZ domain, structur	9e-10
2byg_A	117	Channel associated protein of synapse-110; DLG2, P	9e-10
1z87_A	263	Alpha-1-syntrophin; protein binding; NMR {Mus musc	9e-10
3b76_A	118	E3 ubiquitin-protein ligase LNX; PDZ, bound ligand	1e-09
1uez_A	101	KIAA1526 protein; PDZ domain, structural genomics,	1e-09
2fe5_A	94	Presynaptic protein SAP102; PDZ domain, DLG3, huma	1e-09
2pkt_A	91	PDZ and LIM domain protein 1; PDZ domain, structur	1e-09
1y7n_A	90	Amyloid beta A4 precursor protein-binding family A	1e-09
2iwq_A	123	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	1e-09
1wi4_A	109	Synip, syntaxin binding protein 4; syntaxin4-inter	1e-09
2jre_A	108	C60-1 PDZ domain peptide; de novo protein; NMR {Sy	1e-09
2fne_A	117	Multiple PDZ domain protein; structural protein, s	2e-09
2opg_A	98	Multiple PDZ domain protein; structural protein, s	2e-09
1vb7_A	94	PDZ and LIM domain 2; PDZ domain PDZ-LIM protein,	2e-09
1uhp_A	107	Hypothetical protein KIAA1095; PDZ domain, semapho	2e-09
1wf7_A	103	Enigma homologue protein; PDZ domain, structural g	2e-09
1r6j_A	82	Syntenin 1; PDZ, membrane protein; 0.73A {Homo sap	2e-09
1wi2_A	104	Riken cDNA 2700099C19; structural genomics, riken	3e-09
1uf1_A	128	KIAA1526 protein; PDZ domain, structural genomics,	3e-09
2jxo_A	98	Ezrin-radixin-moesin-binding phosphoprotein 50; nh	3e-09
2uzc_A	88	Human pdlim5, PDZ and LIM domain 5; metal-binding,	3e-09
1ufx_A	103	KIAA1526 protein; PDZ domain, structural genomics,	3e-09
1x5n_A	114	Harmonin; PDZ domain, usher syndrome 1C protein, a	3e-09
1m5z_A	91	GRIP, AMPA receptor interacting protein; six beta-	3e-09
2q3g_A	89	PDZ and LIM domain protein 7; structural genomics,	3e-09
1uju_A	111	Scribble; PDZ domain, cellular signaling, structur	3e-09
2eeh_A	100	PDZ domain-containing protein 7; structural genomi	3e-09
2kv8_A	83	RGS12, regulator of G-protein signaling 12; PDZ do	4e-09
1x5q_A	110	LAP4 protein; PDZ domain, scribble homolog protein	5e-09
2daz_A	124	INAD-like protein; PDZ domain, inadl protein, hina	5e-09
1wf8_A	107	Neurabin-I; PDZ domain, structural genomics, NPPSF	6e-09
2pa1_A	87	PDZ and LIM domain protein 2; PDZ domain, structur	6e-09
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	6e-09
2vsp_A	91	PDZ domain-containing protein 1; membrane, cytopla	7e-09
2dm8_A	116	INAD-like protein; PDZ domain, inadl protein, hina	7e-09
1w9e_A	166	Syntenin 1; cell adhesion, adhesion/complex, PDZ d	7e-09
1w9e_A	166	Syntenin 1; cell adhesion, adhesion/complex, PDZ d	8e-05
3k1r_A	192	Harmonin; protein-protein complex, alternative spl	8e-09
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	9e-09
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	2e-08
2db5_A	128	INAD-like protein; PDZ domain, hinadl, PALS1- asso	1e-08
2w4f_A	97	Protein LAP4; structural protein, phosphoprotein,	1e-08
2he4_A	90	Na(+)/H(+) exchange regulatory cofactor NHE-RF2; p	2e-08
2yuy_A	126	RHO GTPase activating protein 21; PDZ domain, stru	2e-08
2o2t_A	117	Multiple PDZ domain protein; structural protein, s	2e-08
2cs5_A	119	Tyrosine-protein phosphatase, non-receptor type 4;	2e-08
3cbz_A	108	Dishevelled-2; PDZ domain, phage derived high affi	2e-08
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	2e-08
3r68_A	95	Na(+)/H(+) exchange regulatory cofactor NHE-RF3; P	3e-08
2eei_A	106	PDZ domain-containing protein 1; regulatory factor	3e-08
2edp_A	100	Fragment, shroom family member 4; APX/shroom famil	3e-08
1q3o_A	109	Shank1; PDZ, GKAP, peptide binding protein; 1.80A	3e-08
2csj_A	117	TJP2 protein; PDZ domain, structural genomics, NPP	3e-08
1wg6_A	127	Hypothetical protein (riken cDNA 2810455B10); stru	3e-08
2f5y_A	91	Regulator of G-protein signalling 3 isoform 1; PDZ	3e-08
1uit_A	117	Human discs large 5 protein; PDZ domain, HDLG5, ma	3e-08
2edz_A	114	PDZ domain-containing protein 1; CFTR-associated p	4e-08
3nfk_A	107	Tyrosine-protein phosphatase non-receptor type 4;	4e-08
3egg_C	170	Spinophilin; PP1, serine/threonine phosphatase, po	4e-08
3kzd_A	94	TIAM-1, T-lymphoma invasion and metastasis-inducin	5e-08
3ngh_A	106	PDZ domain-containing protein 1; adaptor protein,	5e-08
2edv_A	96	FERM and PDZ domain-containing protein 1; cytoskel	5e-08
2vz5_A	139	TAX1-binding protein 3; WNT signaling pathway, pro	6e-08
2v90_A	96	PDZ domain-containing protein 3; membrane, protein	7e-08
2ego_A	96	General receptor for phosphoinositides 1- associat	7e-08
3khf_A	99	Microtubule-associated serine/threonine-protein ki	7e-08
2kjd_A	128	Sodium/hydrogen exchange regulatory cofactor NHE-	1e-07
1wh1_A	124	KIAA1095 protein; PDZ domain, structural genomics,	1e-07
2d90_A	102	PDZ domain containing protein 1; structural genomi	1e-07
3tsv_A	124	Tight junction protein ZO-1; PDZ, scaffolding, JAM	2e-07
1whd_A	100	RGS3, regulator of G-protein signaling 3; PDZ doma	2e-07
1n7t_A	103	99-MER peptide of densin-180-like protein; PDZ dom	2e-07
1mfg_A	95	ERB-B2 interacting protein; PDZ domain, protein-pe	3e-07
2dls_A	93	PDZ-rhogef, RHO guanine nucleotide exchange factor	4e-07
3l4f_D	132	SH3 and multiple ankyrin repeat domains protein 1;	5e-07
2krg_A	216	Na(+)/H(+) exchange regulatory cofactor NHE-RF1; a	5e-07
2qbw_A	195	PDZ-fibronectin fusion protein; fibronectin PDZ, u	1e-06
2z17_A	104	Pleckstrin homology SEC7 and coiled-coil domains-	1e-06
2vsv_A	109	Rhophilin-2; scaffold protein, RHO GTPase binding,	5e-06
1vae_A	111	Rhophilin 2, rhophilin, RHO GTPase binding protein	1e-05
2yub_A	118	LIMK-2, LIM domain kinase 2; PDZ domain, structura	2e-05
3bpu_A	88	Membrane-associated guanylate kinase, WW and PDZ c	3e-04

>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A Length = 128

 Score = 91.8 bits (228), Expect = 7e-24
 Identities = 57/63 (90%), Positives = 61/63 (96%)

Query: 2   PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61
           PGIFISRLVPGGLA+STGLLAVNDEVLEVNGI V+GKSLDQVTDMM+ANS NLIITV+PA
Sbjct: 65  PGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRPA 124

Query: 62  NQR 64
           NQR
Sbjct: 125 NQR 127

>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} Length = 93

 Score = 80.5 bits (199), Expect = 6e-20
 Identities = 18/64 (28%), Positives = 36/64 (56%)

Query: 2  PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61
            I ++R++ GG A+ +GL+ V DE+ EVNGI V  K  +++  ++  +   +   + P 
Sbjct: 28 GAIIVARIMRGGAADRSGLIHVGDELREVNGIPVEDKRPEEIIQILAQSQGAITFKIIPG 87

Query: 62 NQRA 65
          ++  
Sbjct: 88 SKEE 91

>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1 Length = 113

 Score = 81.0 bits (200), Expect = 6e-20
 Identities = 25/65 (38%), Positives = 40/65 (61%)

Query: 2   PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61
             + ISR+V GG AE +GLL   DEVLE+NGI + GK +++V D++      L   + P+
Sbjct: 48  DSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMHGTLTFVLIPS 107

Query: 62  NQRAN 66
           +  ++
Sbjct: 108 SGPSS 112

>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A Length = 97

 Score = 77.4 bits (191), Expect = 1e-18
 Identities = 20/61 (32%), Positives = 31/61 (50%)

Query: 3  GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPAN 62
             ++R++ GG+    G L V DE+LE+NG  V   S+DQ+   M      + + V P  
Sbjct: 37 SCTVARILHGGMIHRQGSLHVGDEILEINGTNVTNHSVDQLQKAMKETKGMISLKVIPNQ 96

Query: 63 Q 63
          Q
Sbjct: 97 Q 97

>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1 Length = 88

 Score = 74.7 bits (184), Expect = 7e-18
 Identities = 17/62 (27%), Positives = 35/62 (56%)

Query: 2  PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61
              ++R++ GG+    G L V DE+ E+NGI VA ++++Q+  M+     ++   + P+
Sbjct: 25 NHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPS 84

Query: 62 NQ 63
           +
Sbjct: 85 YR 86

>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 65.2 bits (159), Expect = 8e-14
 Identities = 18/75 (24%), Positives = 33/75 (44%)

Query: 2   PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61
             I I R+ P  + + +G L   D +L ++G  +   SL + T ++ + S  + + + P 
Sbjct: 42  SVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLLASISEKVRLEILPV 101

Query: 62  NQRANMSVPRRGSYS 76
            Q      P  G  S
Sbjct: 102 PQSQRPLRPSSGPSS 116

>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 64.8 bits (158), Expect = 8e-14
 Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 3/72 (4%)

Query: 2   PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61
            G +I++++PGG AE TG L    +VLE NGI +  K+ ++V  ++   S    I V+  
Sbjct: 49  IGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQSIISQQSGEAEICVRL- 107

Query: 62  NQRANMSVPRRG 73
               NMS P  G
Sbjct: 108 --DLNMSGPSSG 117

>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 91

 Score = 64.0 bits (156), Expect = 1e-13
 Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 2  PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61
            + I+R++ GG+    GLL V D + EVNG  V G     + +++   S ++I+ +   
Sbjct: 29 GELVIARILHGGMVAQQGLLHVGDIIKEVNGQPV-GSDPRALQELLRNASGSVILKILSG 87

Query: 62 NQRA 65
              
Sbjct: 88 PSSG 91

>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster} Length = 106

 Score = 62.4 bits (152), Expect = 5e-13
 Identities = 19/93 (20%), Positives = 32/93 (34%), Gaps = 13/93 (13%)

Query: 2   PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61
            G  I+ L+ G   E    L   D + + NG  + G        +            K A
Sbjct: 25  IGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALF-----------KGA 73

Query: 62  NQRANMSV--PRRGSYSRTSQLSSDSHQSTQSI 92
           N + +M V  P+ GS    S +     ++   +
Sbjct: 74  NGKVSMEVTRPKPGSGGSGSLVPRLLRRNQYWV 106

>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A Length = 97

 Score = 61.6 bits (150), Expect = 7e-13
 Identities = 19/66 (28%), Positives = 30/66 (45%)

Query: 3  GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPAN 62
           I IS L  GGLAE TG + + D +L +N   + GK L +   ++      + + +K   
Sbjct: 31 PIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQT 90

Query: 63 QRANMS 68
               S
Sbjct: 91 DAQPAS 96

>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens} Length = 101

 Score = 61.7 bits (150), Expect = 8e-13
 Identities = 16/58 (27%), Positives = 27/58 (46%)

Query: 2  PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
          P   I+ L+ GG AE +G L++ D +  +NG  + G  L      +    S   +T+ 
Sbjct: 37 PTAVIANLLHGGPAERSGALSIGDRLTAINGTSLVGLPLAACQAAVRETKSQTSVTLS 94

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus} Length = 721

 Score = 64.5 bits (156), Expect = 4e-12
 Identities = 27/112 (24%), Positives = 44/112 (39%), Gaps = 8/112 (7%)

Query: 2   PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61
           P IFI++++PGG A   G L VND +L VN + V   +     + +    S + + V   
Sbjct: 89  PSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRR 148

Query: 62  NQRANMSVPRRGSYSRTSQLSSDSHQSTQSIATTNNSEDDEQDEVVDLTGIT 113
              A   +  +        L         SIA    ++    D  + +T I 
Sbjct: 149 KPPAEKVMEIK--------LIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKII 192

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus} Length = 721

 Score = 61.1 bits (147), Expect = 5e-11
 Identities = 23/128 (17%), Positives = 43/128 (33%)

Query: 2   PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61
            GIFIS ++ GG A+ +G L   D++L VNG+ +   S +Q    +      + I  +  
Sbjct: 331 EGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYK 390

Query: 62  NQRANMSVPRRGSYSRTSQLSSDSHQSTQSIATTNNSEDDEQDEVVDLTGITLEICRIEP 121
            +  +    +          SS    +    +              D T     + +   
Sbjct: 391 PEEYSRFEAKIHDLREQLMNSSLGSGTASLRSNPKRGFYIRALFDYDKTKDCGFLSQALS 450

Query: 122 STNSDIFE 129
               D+  
Sbjct: 451 FRFGDVLH 458

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus} Length = 721

 Score = 46.8 bits (110), Expect = 3e-06
 Identities = 17/98 (17%), Positives = 39/98 (39%), Gaps = 1/98 (1%)

Query: 2   PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNL-IITVKP 60
             I++++++ GG A   G L + D++L VN + +     +     +      + +   KP
Sbjct: 184 NSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYDVVYLKVAKP 243

Query: 61  ANQRANMSVPRRGSYSRTSQLSSDSHQSTQSIATTNNS 98
           +N   + S       +  SQ   +    +  + T   +
Sbjct: 244 SNAYLSDSYAPPDITTSYSQHLDNEISHSSYLGTDYPT 281

>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 114

 Score = 60.0 bits (145), Expect = 5e-12
 Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 1/73 (1%)

Query: 1   VPGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKP 60
           +  ++++ +   GLA   GL    DE+LE+N       +   + D +   S  L++   P
Sbjct: 43  IRRLYVNSVKETGLASKKGL-KAGDEILEINNRAADALNSSMLKDFLSQPSLGLLVRTYP 101

Query: 61  ANQRANMSVPRRG 73
             +    S P  G
Sbjct: 102 ELEEGVESGPSSG 114

>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A Length = 90

 Score = 59.2 bits (144), Expect = 5e-12
 Identities = 16/57 (28%), Positives = 28/57 (49%)

Query: 3  GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
           I IS++  G  A+ T  L V D +L VNG  ++  + D+    +      +++ VK
Sbjct: 31 PILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVK 87

>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A Length = 96

 Score = 59.2 bits (144), Expect = 5e-12
 Identities = 11/58 (18%), Positives = 20/58 (34%)

Query: 2  PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
           G  I+ L+ G   E    L   D + + NG  + G        +    +  + + V 
Sbjct: 31 IGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVSYALFKGANGKVSMEVT 88

>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens} Length = 95

 Score = 59.2 bits (144), Expect = 6e-12
 Identities = 19/58 (32%), Positives = 32/58 (55%)

Query: 2  PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
          PG+FI  L+ GGLA   G L+ ND VL +NG  +   + +    ++ A+   + +T+ 
Sbjct: 29 PGVFILDLLEGGLAAQDGRLSSNDRVLAINGHDLKYGTPELAAQIIQASGERVNLTIA 86

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus} Length = 200

 Score = 61.3 bits (149), Expect = 9e-12
 Identities = 16/84 (19%), Positives = 33/84 (39%)

Query: 2   PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61
               +S L  GG+A  +  L V D +  VNGI +A    D++  ++      +++ V+  
Sbjct: 33  GKPRVSNLRQGGIAARSDQLDVGDYIKAVNGINLAKFRHDEIISLLKNVGERVVLEVEYE 92

Query: 62  NQRANMSVPRRGSYSRTSQLSSDS 85
               ++        +    L  + 
Sbjct: 93  LPPVSIQGSSVMFRTVEVTLHKEG 116

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus} Length = 200

 Score = 60.1 bits (146), Expect = 3e-11
 Identities = 12/58 (20%), Positives = 27/58 (46%)

Query: 2   PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
             + I+ + PGG A+  G +   D +L V+GI + G +  +   ++        + ++
Sbjct: 135 RPVVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQEATLLIE 192

>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 129

 Score = 59.8 bits (145), Expect = 9e-12
 Identities = 24/90 (26%), Positives = 46/90 (51%), Gaps = 11/90 (12%)

Query: 2   PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61
            GI++  ++PG  A   G + VND+++ V+G+ + G +   V +++           + A
Sbjct: 46  SGIYVKSVIPGSAAYHNGHIQVNDKIVAVDGVNIQGFANHDVVEVL-----------RNA 94

Query: 62  NQRANMSVPRRGSYSRTSQLSSDSHQSTQS 91
            Q  ++++ RR + S TS L   S + T S
Sbjct: 95  GQVVHLTLVRRKTSSSTSPLEPPSDRGTVS 124

>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 114

 Score = 59.0 bits (143), Expect = 1e-11
 Identities = 15/72 (20%), Positives = 29/72 (40%)

Query: 2   PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61
               I R++ G  A+    L V D +L VNG  +       +  ++     ++ + + P 
Sbjct: 43  VPHKIGRIIDGSPADRCAKLKVGDRILAVNGQSIINMPHADIVKLIKDAGLSVTLRIIPQ 102

Query: 62  NQRANMSVPRRG 73
            +  + S P  G
Sbjct: 103 EELNSPSGPSSG 114

>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 57.7 bits (140), Expect = 2e-11
 Identities = 18/45 (40%), Positives = 26/45 (57%)

Query: 3  GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMM 47
           I I  ++  G A+  G L   DE++ V+GI VAGK+   V D+M
Sbjct: 35 PILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLM 79

>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 93

 Score = 57.6 bits (140), Expect = 2e-11
 Identities = 19/58 (32%), Positives = 37/58 (63%)

Query: 2  PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
            I+ISR++PGG+A+  G L   D++L VNG+ V G+  ++  +++ A   ++ + V+
Sbjct: 30 SPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKAAQGSVKLVVR 87

>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A Length = 125

 Score = 58.2 bits (141), Expect = 2e-11
 Identities = 15/58 (25%), Positives = 26/58 (44%)

Query: 2   PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
           P ++I ++     A   G +A  DE+  VNG  + GK+  +V  M+      + I   
Sbjct: 45  PCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYN 102

>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1 Length = 98

 Score = 57.3 bits (139), Expect = 3e-11
 Identities = 17/59 (28%), Positives = 27/59 (45%)

Query: 2  PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKP 60
           GIFI  +VP   A   G L V D +L +NG  V   +   V D++      + + ++ 
Sbjct: 37 TGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQT 95

>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1 Length = 127

 Score = 57.9 bits (140), Expect = 4e-11
 Identities = 21/95 (22%), Positives = 43/95 (45%), Gaps = 4/95 (4%)

Query: 2   PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITV--- 58
           P + IS L+ GG AE +GL+   D +L VN   +   S D   +++   +S   + +   
Sbjct: 33  PPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILR 92

Query: 59  KPANQRANMSVPRRGSYS-RTSQLSSDSHQSTQSI 92
            P     ++     G  + +T +++      T+++
Sbjct: 93  GPEGFTTHLETTFTGDGTPKTIRVTQPLGPPTKAV 127

>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus} Length = 85

 Score = 56.9 bits (138), Expect = 4e-11
 Identities = 13/46 (28%), Positives = 19/46 (41%)

Query: 2  PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMM 47
            + I  LV  G A   G +   D ++ VN   V G +  QV  + 
Sbjct: 25 EFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIF 70

>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 57.3 bits (139), Expect = 4e-11
 Identities = 15/58 (25%), Positives = 26/58 (44%)

Query: 2  PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
            + +  L+  G A+  G L V D VL +NG    G +  Q  + + A    L + ++
Sbjct: 38 TPLAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGLTHAQAVERIRAGGPQLHLVIR 95

>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens} Length = 103

 Score = 57.0 bits (138), Expect = 4e-11
 Identities = 15/58 (25%), Positives = 24/58 (41%)

Query: 3  GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKP 60
           I IS + PG  A+  G L V D +L VNG+ +      +   ++      +   V  
Sbjct: 36 PILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEIEFEVVY 93

>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus} Length = 113

 Score = 57.4 bits (139), Expect = 5e-11
 Identities = 20/88 (22%), Positives = 35/88 (39%), Gaps = 13/88 (14%)

Query: 2   PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61
            GIF+  +  GG A   G + VND ++EV+G  + G +      ++           +  
Sbjct: 35  LGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVL-----------RNT 83

Query: 62  NQRANMSVPRR--GSYSRTSQLSSDSHQ 87
             R    + R   G  S  +QL   + +
Sbjct: 84  KGRVRFMIGRERPGEQSEVAQLIQQTLE 111

>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 111

 Score = 57.4 bits (139), Expect = 5e-11
 Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 2/74 (2%)

Query: 2   PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK-- 59
            G+ +  +VPGGLA+  G L   D +L++ G  V G + +QV  ++    +++ + V   
Sbjct: 38  SGVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGMTSEQVAQVLRNCGNSVRMLVARD 97

Query: 60  PANQRANMSVPRRG 73
           PA   +  S P  G
Sbjct: 98  PAGDISVTSGPSSG 111

>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens} Length = 112

 Score = 57.1 bits (138), Expect = 5e-11
 Identities = 15/57 (26%), Positives = 24/57 (42%)

Query: 3   GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
            I IS + PG  A+  G L V D +L VNG+ +      +   ++      +   V 
Sbjct: 54  PILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEIEFEVV 110

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster} Length = 206

 Score = 59.1 bits (143), Expect = 6e-11
 Identities = 11/57 (19%), Positives = 20/57 (35%)

Query: 2   PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITV 58
            G  I+ L+ G   E    L   D + + NG  + G        +    +  + + V
Sbjct: 136 IGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGANGKVSMEV 192

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster} Length = 206

 Score = 51.0 bits (122), Expect = 4e-08
 Identities = 9/41 (21%), Positives = 18/41 (43%)

Query: 2  PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQ 42
           G  I+ + P G   +   L + D + ++NG  +   S+  
Sbjct: 45 TGCVITHVYPEGQVAADKRLKIFDHICDINGTPIHVGSMTT 85

>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens} Length = 92

 Score = 56.5 bits (137), Expect = 6e-11
 Identities = 17/58 (29%), Positives = 32/58 (55%)

Query: 2  PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
           G+F+S +V GG+A++ G L   D++L VNG  V   + + V  ++  +   + + V 
Sbjct: 29 TGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNATQEAVAALLKCSLGTVTLEVG 86

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A Length = 196

 Score = 58.6 bits (142), Expect = 7e-11
 Identities = 11/59 (18%), Positives = 28/59 (47%)

Query: 2   PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKP 60
             + IS +  G +A  TG L + D++L ++ I +   S++    ++      + + ++ 
Sbjct: 135 DPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQCEDLVKLKIRK 193

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A Length = 196

 Score = 58.6 bits (142), Expect = 7e-11
 Identities = 16/73 (21%), Positives = 33/73 (45%)

Query: 3   GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPAN 62
              IS +     AE  G+L + D V+ +NGI     + ++   ++  +S    +T++   
Sbjct: 37  PPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTLEIEF 96

Query: 63  QRANMSVPRRGSY 75
             A   +P  G++
Sbjct: 97  DVAESVIPSSGTF 109

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A Length = 196

 Score = 58.6 bits (142), Expect = 7e-11
 Identities = 19/58 (32%), Positives = 30/58 (51%)

Query: 2  PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
          P IFI++++PGG A   G L VND +L VN + V   +     + +    S + + V 
Sbjct: 35 PSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVM 92

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A Length = 196

 Score = 57.5 bits (139), Expect = 2e-10
 Identities = 11/58 (18%), Positives = 26/58 (44%)

Query: 2   PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
             I++++++ GG A   G L + D++L VN + +     +     +      + + V 
Sbjct: 130 NSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYDVVYLKVA 187

>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A Length = 102

 Score = 56.6 bits (137), Expect = 7e-11
 Identities = 20/58 (34%), Positives = 32/58 (55%)

Query: 2  PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
          PGIFI++++PGG A   G L VND VL VN + V+     +  + +      + + V+
Sbjct: 34 PGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVDVSEVVHSRAVEALKEAGPVVRLVVR 91

>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens} Length = 112

 Score = 56.6 bits (137), Expect = 8e-11
 Identities = 13/58 (22%), Positives = 28/58 (48%)

Query: 2   PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
             +++ RL   G AE +G + + DE+LE+NG         +  +++      + + +K
Sbjct: 49  MDLYVLRLAEDGPAERSGKMRIGDEILEINGETTKNMKHSRAIELIKNGGRRVRLFLK 106

>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A Length = 105

 Score = 56.6 bits (137), Expect = 8e-11
 Identities = 14/75 (18%), Positives = 35/75 (46%), Gaps = 3/75 (4%)

Query: 2   PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61
             I++++++ GG A   G L + D++L VN + +   + ++    +   S  + + V   
Sbjct: 33  NSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEEVTHEEAVTALKNTSDFVYLKVA-- 90

Query: 62  NQRANMSVPRRGSYS 76
            +  +M + R   + 
Sbjct: 91  -KPTSMYISRHHHHH 104

>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2 Length = 130

 Score = 57.1 bits (138), Expect = 9e-11
 Identities = 14/84 (16%), Positives = 36/84 (42%), Gaps = 10/84 (11%)

Query: 2   PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61
             + I+R+  G  +E +  +   DE+L++ G  + G +  +  +++ A     +      
Sbjct: 57  KPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPV------ 110

Query: 62  NQRANMSVPRRGSYSRTSQLSSDS 85
                + + R+   S+ +  + DS
Sbjct: 111 ----TIVIRRKSLQSKETTAAGDS 130

>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A Length = 104

 Score = 56.2 bits (136), Expect = 9e-11
 Identities = 18/58 (31%), Positives = 30/58 (51%)

Query: 2  PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
           GIFIS ++ GG A+ +G L   D++L VNG+ +   S +Q    +      + I  +
Sbjct: 35 EGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQ 92

>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A Length = 120

 Score = 56.6 bits (137), Expect = 1e-10
 Identities = 17/68 (25%), Positives = 31/68 (45%)

Query: 2   PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61
             IFI+ + P G+A  T  L V D ++ + G    G +  Q  +++   S ++ + V   
Sbjct: 53  VPIFIAMMHPTGVAAQTQKLRVGDRIVTICGTSTEGMTHTQAVNLLKNASGSIEMQVVAG 112

Query: 62  NQRANMSV 69
              +  SV
Sbjct: 113 GDVSETSV 120

>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A Length = 129

 Score = 56.7 bits (137), Expect = 1e-10
 Identities = 21/101 (20%), Positives = 33/101 (32%), Gaps = 15/101 (14%)

Query: 2   PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61
             + I  LV  G A   G +   D ++ VN   V G +  QV  +  +          P 
Sbjct: 43  EFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQS---------IPI 93

Query: 62  NQRANMSVPRRGSYSRTSQLSSDSHQSTQSIATTNNSEDDE 102
               ++ + R         L  D      S+ T+    D E
Sbjct: 94  GASVDLELCRG------YPLPFDPDDPNTSLVTSVAILDKE 128

>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 108

 Score = 56.3 bits (136), Expect = 1e-10
 Identities = 14/46 (30%), Positives = 23/46 (50%)

Query: 2  PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMM 47
            I I  LV  G+AE +G L   D ++ VN   +   SL +  +++
Sbjct: 44 SVIVIRSLVADGVAERSGGLLPGDRLVSVNEYCLDNTSLAEAVEIL 89

>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens} Length = 92

 Score = 55.5 bits (134), Expect = 1e-10
 Identities = 16/68 (23%), Positives = 30/68 (44%)

Query: 3  GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPAN 62
           IF+  +    LA   G +   D VL++NG +    SL     ++  +   L + V+   
Sbjct: 24 HIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSKGKLKMVVQRDE 83

Query: 63 QRANMSVP 70
          +   ++VP
Sbjct: 84 RATLLNVP 91

>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens} Length = 95

 Score = 55.5 bits (134), Expect = 1e-10
 Identities = 14/57 (24%), Positives = 24/57 (42%)

Query: 3  GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
            FI R+  GG+ +S   + V D +  +NG  + G     V   +       + T+K
Sbjct: 29 YAFIKRIKDGGVIDSVKTICVGDHIESINGENIVGWRHYDVAKKLKELKKEELFTMK 85

>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens} Length = 88

 Score = 55.4 bits (134), Expect = 1e-10
 Identities = 15/56 (26%), Positives = 25/56 (44%)

Query: 3  GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITV 58
           IF+  +   GLA   G L   D +L++NG +    SL     ++  +   L + V
Sbjct: 22 QIFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLTDARKLIEKSRGKLQLVV 77

>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens} Length = 90

 Score = 55.3 bits (134), Expect = 1e-10
 Identities = 18/55 (32%), Positives = 28/55 (50%)

Query: 3  GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIIT 57
           I+I  +VP G A++ G L   DE++ V+G  V GKS   V  +M   +    + 
Sbjct: 28 PIYIGHIVPLGAADTDGRLRSGDELISVDGTPVIGKSHQLVVQLMQQAAKQGHVN 82

>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A Length = 131

 Score = 56.3 bits (136), Expect = 2e-10
 Identities = 17/56 (30%), Positives = 33/56 (58%)

Query: 3   GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITV 58
             FI+++  G LA++ G L   DEVLE NG L+ G + ++V ++++ +     + +
Sbjct: 66  CAFITKVKKGSLADTVGHLRPGDEVLEWNGRLLQGATFEEVYNIILESKPEPQVEL 121

>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens} Length = 90

 Score = 54.7 bits (132), Expect = 2e-10
 Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 3/60 (5%)

Query: 2  PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMM--VANSSNLIITVK 59
          PGIF++ +  G  AE + L  V+DE++ +N    +     +  + M     + +L++ V+
Sbjct: 28 PGIFVASVEAGSPAEFSQLQ-VDDEIIAINNTKFSYNDSKEWEEAMAKAQETGHLVMDVR 86

>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A Length = 114

 Score = 55.5 bits (134), Expect = 2e-10
 Identities = 15/58 (25%), Positives = 26/58 (44%)

Query: 2   PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
           P ++I ++     A   G +A  DE+  VNG  + GK+  +V  M+      + I   
Sbjct: 50  PCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYN 107

>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A Length = 81

 Score = 54.6 bits (132), Expect = 2e-10
 Identities = 14/56 (25%), Positives = 24/56 (42%)

Query: 3  GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITV 58
           IF+  +    LA   G +   D VL++NG +    SL     ++  +   L + V
Sbjct: 22 HIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSKGKLKMVV 77

>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B Length = 112

 Score = 55.2 bits (133), Expect = 2e-10
 Identities = 19/94 (20%), Positives = 39/94 (41%), Gaps = 9/94 (9%)

Query: 2   PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61
           P + IS L+ GG AE +GL+   D +L VN   +   S D   +++   +S   + +   
Sbjct: 26  PPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLI-- 83

Query: 62  NQRANMSVPRRGSYSRTSQLSSDSHQSTQSIATT 95
                  +     ++   + +     + ++I  T
Sbjct: 84  -------LRGPEGFTTHLETTFTGDGTPKTIRVT 110

>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A Length = 85

 Score = 54.6 bits (132), Expect = 2e-10
 Identities = 14/61 (22%), Positives = 31/61 (50%), Gaps = 1/61 (1%)

Query: 3  GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPAN 62
           + ISR+ PG  A  + L    D V+ ++G+     +  +  + + + S NL +T++ + 
Sbjct: 26 PLTISRITPGSKAAQSQLS-QGDLVVAIDGVNTDTMTHLEAQNKIKSASYNLSLTLQKSK 84

Query: 63 Q 63
          +
Sbjct: 85 R 85

>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A Length = 107

 Score = 55.1 bits (133), Expect = 3e-10
 Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 11/80 (13%)

Query: 2   PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61
             I IS ++ GG AE  G L  ND V  VNG+ +           +  +  N  IT++  
Sbjct: 39  TSIVISDVLKGGPAE--GQLQENDRVAMVNGVSMDNVEHAFAVQQLRKSGKNAKITIR-- 94

Query: 62  NQRANMSVPRRGSYSRTSQL 81
             R      + G + RT+ L
Sbjct: 95  --R-----KKGGGWRRTTYL 107

>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 105

 Score = 55.0 bits (133), Expect = 3e-10
 Identities = 20/58 (34%), Positives = 30/58 (51%)

Query: 2  PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
           GIF+SR+  GG A   G L V D VL +NG+ V     D    ++ A S  + + ++
Sbjct: 38 AGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLLTAASPTIALLLE 95

>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A Length = 96

 Score = 54.5 bits (132), Expect = 3e-10
 Identities = 16/57 (28%), Positives = 29/57 (50%)

Query: 2  PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITV 58
           GI++  ++P G AES G +   D VL VNG+ + G +  Q  + +      + + +
Sbjct: 33 GGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLL 89

>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1 Length = 118

 Score = 55.1 bits (133), Expect = 3e-10
 Identities = 13/47 (27%), Positives = 24/47 (51%)

Query: 1  VPGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMM 47
          V  + +S +  GG AE  G +   DE++ +NG +V   +L +    +
Sbjct: 42 VGKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAAL 88

>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1 Length = 122

 Score = 55.2 bits (133), Expect = 4e-10
 Identities = 17/72 (23%), Positives = 32/72 (44%)

Query: 3   GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPAN 62
              IS +     AE  G+L + D V+ +NGI     + ++   ++  +S    +T++   
Sbjct: 46  PPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTLEIEF 105

Query: 63  QRANMSVPRRGS 74
             A   +P  GS
Sbjct: 106 DVAESVIPSSGS 117

>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 123

 Score = 55.1 bits (133), Expect = 4e-10
 Identities = 15/88 (17%), Positives = 33/88 (37%), Gaps = 9/88 (10%)

Query: 2   PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61
             + +  ++P G A   G +   D ++ +N + V G +   V  +  +          P 
Sbjct: 44  EFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKLFQS---------VPI 94

Query: 62  NQRANMSVPRRGSYSRTSQLSSDSHQST 89
            Q  N+ + R        +  ++S  S+
Sbjct: 95  GQSVNLVLCRGYPLPFDPEDPANSGPSS 122

>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 110

 Score = 54.6 bits (132), Expect = 4e-10
 Identities = 18/69 (26%), Positives = 33/69 (47%)

Query: 2   PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61
           PG++I  L+PG  A + G L++ D +LEVNG  + G    +  D++      +   V  +
Sbjct: 36  PGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDLIRHGGKKMRFLVAKS 95

Query: 62  NQRANMSVP 70
           +      + 
Sbjct: 96  DVETAKKIH 104

>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A Length = 119

 Score = 55.1 bits (133), Expect = 4e-10
 Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 2/79 (2%)

Query: 2   PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVA--NSSNLIITVK 59
            GIFIS ++ GG A+ +G L   D++L VNG+ +   S +Q    +     +  +I   K
Sbjct: 38  EGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYK 97

Query: 60  PANQRANMSVPRRGSYSRT 78
           P       +  R  S  R 
Sbjct: 98  PEEYSRFEANSRVDSSGRI 116

>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 120

 Score = 55.1 bits (133), Expect = 4e-10
 Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 2/74 (2%)

Query: 2   PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK-- 59
            GI++SR+   G A   G L   D++L VNG  +         D+       + + V+  
Sbjct: 47  SGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRVQHR 106

Query: 60  PANQRANMSVPRRG 73
              Q   +S P  G
Sbjct: 107 LQVQNGPISGPSSG 120

>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A Length = 106

 Score = 54.6 bits (132), Expect = 4e-10
 Identities = 19/57 (33%), Positives = 33/57 (57%)

Query: 2  PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITV 58
           GI++  +V GG A+  G LA  D++L V+G  + G S ++  ++M   SS + + V
Sbjct: 38 LGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTRTSSVVTLEV 94

>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A Length = 111

 Score = 54.6 bits (132), Expect = 4e-10
 Identities = 18/82 (21%), Positives = 39/82 (47%), Gaps = 9/82 (10%)

Query: 2   PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61
             I++  ++P G A   G L   D ++EVNG+ +AGKS ++V  ++ +      +++   
Sbjct: 39  APIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEVVSLLRSTKMEGTVSLL-- 96

Query: 62  NQRANMSVPRRGSYSRTSQLSS 83
                  V R+       ++++
Sbjct: 97  -------VFRQEEAFHPREMNA 111

>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A Length = 101

 Score = 53.9 bits (130), Expect = 6e-10
 Identities = 15/58 (25%), Positives = 25/58 (43%)

Query: 2  PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
           GI++SR+   G A   G L   D++L VNG  +         D+       + + V+
Sbjct: 37 SGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRVQ 94

>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 53.9 bits (130), Expect = 6e-10
 Identities = 15/71 (21%), Positives = 32/71 (45%), Gaps = 4/71 (5%)

Query: 3   GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPAN 62
            +++ RL   G A   G + V D+++E+NG      +  +  +++ +    + + +K   
Sbjct: 37  DLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIKSGGRRVRLLLK--- 93

Query: 63  QRANMSVPRRG 73
            R   S P  G
Sbjct: 94  -RGTGSGPSSG 103

>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens} Length = 97

 Score = 53.8 bits (130), Expect = 6e-10
 Identities = 12/57 (21%), Positives = 27/57 (47%)

Query: 3  GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
           + I+ + PGG A+  G +   D +L V+GI + G +  +   ++        + ++
Sbjct: 33 PVVITSVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQEAALLIE 89

>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 108

 Score = 53.9 bits (130), Expect = 7e-10
 Identities = 16/57 (28%), Positives = 29/57 (50%)

Query: 2  PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITV 58
           GI++  ++P G AES G +   D VL VNG+ + G +  Q  + +      + + +
Sbjct: 42 GGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLL 98

>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1 Length = 103

 Score = 53.9 bits (130), Expect = 7e-10
 Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 1/74 (1%)

Query: 3   GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPAN 62
            + I+R+ PG  A +  L    D +L ++G      +     D + A S  L + +  A 
Sbjct: 30  PLVITRITPGSKAAAANLC-PGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRAE 88

Query: 63  QRANMSVPRRGSYS 76
            R        G  S
Sbjct: 89  TRLWSPQVSSGPSS 102

>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens} Length = 97

 Score = 53.8 bits (130), Expect = 7e-10
 Identities = 11/58 (18%), Positives = 28/58 (48%)

Query: 2  PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
           GIF+  +      E  G + + D+++ V+G  + G +  Q  +++      +++T+ 
Sbjct: 33 SGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLM 90

>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 113

 Score = 53.9 bits (130), Expect = 7e-10
 Identities = 16/58 (27%), Positives = 30/58 (51%)

Query: 2  PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
           GIF+S ++ GG A+ +G L   D +L VNG+ +   + +Q    +     ++ I  +
Sbjct: 39 EGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKRAGQSVTIVAQ 96

>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1 Length = 126

 Score = 54.5 bits (131), Expect = 8e-10
 Identities = 15/58 (25%), Positives = 28/58 (48%)

Query: 2   PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
           P + IS L+  G A S G+L   D ++ V    V G +L +   ++   +   ++ +K
Sbjct: 49  PYLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNITIGTVLQIK 106

>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens} Length = 121

 Score = 54.3 bits (131), Expect = 8e-10
 Identities = 15/46 (32%), Positives = 27/46 (58%)

Query: 2   PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMM 47
             I++  ++P G A   G L   D ++EVNG+ + GKS ++V  ++
Sbjct: 58  APIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVGKSQEEVVSLL 103

>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 117

 Score = 54.0 bits (130), Expect = 8e-10
 Identities = 14/58 (24%), Positives = 29/58 (50%)

Query: 2   PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
            GIFI +++    A  T  L   D++LEV+G+ +   S  +  + +    + ++  V+
Sbjct: 50  KGIFIKQVLEDSPAGKTNALKTGDKILEVSGVDLQNASHSEAVEAIKNAGNPVVFIVQ 107

>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A Length = 91

 Score = 53.4 bits (129), Expect = 8e-10
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 1  VPGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKP 60
            G +I  + PG  AE  GLL   D ++EVNG  V  ++  QV   + A  + + + V  
Sbjct: 26 KLGQYIRLVEPGSPAEKAGLL-AGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVD 84

>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2 Length = 119

 Score = 54.0 bits (130), Expect = 8e-10
 Identities = 13/56 (23%), Positives = 23/56 (41%)

Query: 3  GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITV 58
           I + R+ P GLA   G +   +EVL +NG  + G +      ++          +
Sbjct: 43 VITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAILRQAREPRQAVI 98

>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 53.5 bits (129), Expect = 9e-10
 Identities = 14/58 (24%), Positives = 28/58 (48%)

Query: 2  PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
           GIFI  ++    A   G L   D ++EV+G+ +   S +Q  + +    + ++  V+
Sbjct: 39 RGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQ 96

>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 94

 Score = 53.4 bits (129), Expect = 9e-10
 Identities = 11/57 (19%), Positives = 22/57 (38%), Gaps = 1/57 (1%)

Query: 3  GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
           + ISR+  G  A    L    D +  +NG      +  +  + +     +L ++V 
Sbjct: 33 PLTISRVHAGSKAALAALC-PGDLIQAINGESTELMTHLEAQNRIKGCHDHLTLSVS 88

>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 53.9 bits (130), Expect = 9e-10
 Identities = 13/58 (22%), Positives = 29/58 (50%)

Query: 2   PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
             I++++++ GG A+  G L V D +L VN   +   + ++   ++   S  + + V 
Sbjct: 54  NSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKNTSEVVYLKVG 111

>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus} Length = 263

 Score = 56.3 bits (135), Expect = 9e-10
 Identities = 20/89 (22%), Positives = 34/89 (38%)

Query: 3   GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPAN 62
            I IS++  G  A+ T  L V D +L VNG  ++  + D+    +      +++ VK   
Sbjct: 104 PILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYMK 163

Query: 63  QRANMSVPRRGSYSRTSQLSSDSHQSTQS 91
           + +       G  S        S    Q 
Sbjct: 164 EVSPYFKNSAGGTSVGWDSPPASPLQRQP 192

>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens} Length = 118

 Score = 53.9 bits (130), Expect = 1e-09
 Identities = 12/63 (19%), Positives = 30/63 (47%)

Query: 3   GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPAN 62
            I++  + PGG+    G +   D +L V+G+ +   S  +   ++   SS++++      
Sbjct: 54  PIYVISVEPGGVISRDGRIKTGDILLNVDGVELTEVSRSEAVALLKRTSSSIVLKALEVK 113

Query: 63  QRA 65
           + +
Sbjct: 114 EGS 116

>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 101

 Score = 53.5 bits (129), Expect = 1e-09
 Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 5/72 (6%)

Query: 2   PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61
            GI++S + PG LAE  GL  V D++L VN   +A  +  +    +   S  L+++V   
Sbjct: 35  VGIYVSLVEPGSLAEKEGLR-VGDQILRVNDKSLARVTHAEAVKAL-KGSKKLVLSVY-- 90

Query: 62  NQRANMSVPRRG 73
                +S P  G
Sbjct: 91  -SAGRISGPSSG 101

>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A Length = 94

 Score = 53.1 bits (128), Expect = 1e-09
 Identities = 13/58 (22%), Positives = 27/58 (46%)

Query: 2  PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
            I+I++++ GG A+  G L + D +L VN   +     ++    +   S  + + V 
Sbjct: 33 NSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVA 90

>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A* Length = 91

 Score = 52.7 bits (127), Expect = 1e-09
 Identities = 13/65 (20%), Positives = 30/65 (46%), Gaps = 1/65 (1%)

Query: 3  GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPAN 62
           + ISR+ PG  A    L  + D +  ++G   +  +  +  + +   + NL +TV  + 
Sbjct: 28 PLAISRVTPGSKAALANLC-IGDVITAIDGENTSNMTHLEAQNRIKGCTDNLTLTVARSE 86

Query: 63 QRANM 67
            +++
Sbjct: 87 HESDL 91

>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 90

 Score = 52.8 bits (127), Expect = 1e-09
 Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 1  VPGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKP 60
          V    I  L+ GG+AE  G+  V   ++E+NG  V     +++  ++      + +   P
Sbjct: 30 VQNGIICSLMRGGIAERGGVR-VGHRIIEINGQSVVATPHEKIVHILSNAVGEIHMKTMP 88

Query: 61 A 61
          A
Sbjct: 89 A 89

>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens} Length = 123

 Score = 53.6 bits (129), Expect = 1e-09
 Identities = 14/58 (24%), Positives = 28/58 (48%)

Query: 2   PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
            GIFI  ++    A   G L   D ++EV+G+ +   S +Q  + +    + ++  V+
Sbjct: 59  RGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQ 116

>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1 Length = 109

 Score = 53.2 bits (128), Expect = 1e-09
 Identities = 11/46 (23%), Positives = 24/46 (52%)

Query: 2  PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMM 47
          P ++I  ++PGG     G L   D+++ +N   + G S ++   ++
Sbjct: 41 PLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSII 86

>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic} Length = 108

 Score = 53.1 bits (128), Expect = 1e-09
 Identities = 14/58 (24%), Positives = 30/58 (51%)

Query: 2   PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
            GI++  L+PG  A   G +  ND++L V+ + V G +   V +++    + + + + 
Sbjct: 44  TGIYVKSLIPGSAAALDGRIEPNDKILRVDDVNVQGMAQSDVVEVLRNAGNPVRLLLI 101

>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 53.1 bits (128), Expect = 2e-09
 Identities = 11/57 (19%), Positives = 25/57 (43%)

Query: 2   PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITV 58
             I++  +   G A   G L   D+++ VNG  + G + ++   ++      + + V
Sbjct: 53  LPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMV 109

>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens} Length = 98

 Score = 52.3 bits (126), Expect = 2e-09
 Identities = 15/57 (26%), Positives = 27/57 (47%)

Query: 3  GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
           I I  +   G A   G L   D++LEVNGI +   + D+  +++      + +T+ 
Sbjct: 31 AIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHDEAINVLRQTPQRVRLTLY 87

>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1 Length = 94

 Score = 52.3 bits (126), Expect = 2e-09
 Identities = 10/57 (17%), Positives = 24/57 (42%), Gaps = 1/57 (1%)

Query: 3  GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
           I ++++   G AE+  L    D ++ +NG         +    +  ++S L + + 
Sbjct: 31 PIIVTKVTERGKAEAADLR-PGDIIVAINGQSAENMLHAEAQSKIRQSASPLRLQLD 86

>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 107

 Score = 52.8 bits (127), Expect = 2e-09
 Identities = 17/58 (29%), Positives = 31/58 (53%)

Query: 2  PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
           GIF+S++V  G A   G L ++D ++EVNG  ++  + DQ  +        +++ V 
Sbjct: 41 EGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVEAFKTAKEPIVVQVL 98

>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1 Length = 103

 Score = 52.4 bits (126), Expect = 2e-09
 Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 1/74 (1%)

Query: 3   GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPAN 62
            + IS L  GG A    +  + D VL ++GI   G +  +  + + A + +L +T++ A+
Sbjct: 30  PLTISSLKDGGKASQAHVR-IGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRAS 88

Query: 63  QRANMSVPRRGSYS 76
             A       G  S
Sbjct: 89  AAAKSEPVSSGPSS 102

>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A Length = 82

 Score = 51.9 bits (125), Expect = 2e-09
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)

Query: 6  ISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61
          I+ +V    A   GLL     + E+NG  V G    Q+ D++  + + + IT+ PA
Sbjct: 27 ITSIVKDSSAARNGLL-TEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA 81

>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1 Length = 104

 Score = 52.4 bits (126), Expect = 3e-09
 Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query: 2  PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
           GIFIS+++P   A   GL    D+VL VN +        +  +++   +  + + V+
Sbjct: 41 LGIFISKVIPDSDAHRAGLQ-EGDQVLAVNDVDFQDIEHSKAVEIL-KTAREISMRVR 96

>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 128

 Score = 52.9 bits (127), Expect = 3e-09
 Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 6/88 (6%)

Query: 2   PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61
            GI+I+ + PG  AE +GL  V D++LEVNG        D+   ++  +S +LI+TVK  
Sbjct: 46  LGIYITGVDPGSEAEGSGLK-VGDQILEVNGRSFLNILHDEAVRLL-KSSRHLILTVK-- 101

Query: 62  NQRANMSVPRRGSYSRTSQLSSDSHQST 89
                     R +   T  ++S S  S+
Sbjct: 102 --DVGRLPHARTTVDETKWIASSSGPSS 127

>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens} Length = 98

 Score = 52.0 bits (125), Expect = 3e-09
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 2  PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITV 58
          PG FI  + P   AE++GL    D ++EVNG+ + GK    V   + A      + V
Sbjct: 33 PGQFIRSVDPDSPAEASGLR-AQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKLLV 88

>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens} Length = 88

 Score = 51.9 bits (125), Expect = 3e-09
 Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 3  GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
           + IS L  GG A    +  + D VL ++GI   G +  +  + +   + +L +T++
Sbjct: 28 PLTISSLKDGGKAAQANVR-IGDVVLSIDGINAQGMTHLEAQNKIKGCTGSLNMTLQ 83

>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 52.0 bits (125), Expect = 3e-09
 Identities = 15/46 (32%), Positives = 23/46 (50%)

Query: 2  PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMM 47
          P   I  +  GG A + G L V   +LEVNG+ + GK   +   ++
Sbjct: 32 PLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARII 77

>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A Length = 114

 Score = 52.5 bits (126), Expect = 3e-09
 Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 2/75 (2%)

Query: 2   PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61
           PGIFIS + PG L+   GL  + D+++EVNG+  +     +  +++  +S +L I++  A
Sbjct: 41  PGIFISHVKPGSLSAEVGLE-IGDQIVEVNGVDFSNLDHKEAVNVL-KSSRSLTISIVAA 98

Query: 62  NQRANMSVPRRGSYS 76
             R      R G  S
Sbjct: 99  AGRELFMTDRSGPSS 113

>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 Length = 91

 Score = 51.6 bits (124), Expect = 3e-09
 Identities = 11/58 (18%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 2  PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
           G+++  + P G  +  GL    D +L+VN +         V  ++  + + L + + 
Sbjct: 32 KGVYVKNIRPAGPGDLGGLK-PYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVIS 88

>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens} Length = 89

 Score = 51.5 bits (124), Expect = 3e-09
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 3  GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
           + ISRL PGG A   G+  V D VL ++G      +  +  + + A    L + + 
Sbjct: 28 PLSISRLTPGGKAAQAGVA-VGDWVLSIDGENAGSLTHIEAQNKIRACGERLSLGLS 83

>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 111

 Score = 52.4 bits (126), Expect = 3e-09
 Identities = 18/64 (28%), Positives = 29/64 (45%)

Query: 2   PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61
            GIFIS++ P G A   G L V   +LEVN   + G +  +   ++ +    L + V   
Sbjct: 44  EGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQLLRSVGDTLTVLVCDG 103

Query: 62  NQRA 65
            +  
Sbjct: 104 FESG 107

>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 52.0 bits (125), Expect = 3e-09
 Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 2/57 (3%)

Query: 3  GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
          GIF+S++  G  AE  GL  V D++ EVNG+ +   ++     ++  +SS L + V+
Sbjct: 37 GIFVSKVEEGSSAERAGLC-VGDKITEVNGLSLESTTMGSAVKVL-TSSSRLHMMVR 91

>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens} Length = 83

 Score = 51.1 bits (123), Expect = 4e-09
 Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 1/58 (1%)

Query: 3  GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKP 60
             +S ++ G  A+  GL    D++L VN I V   S + V  ++   S  L + +  
Sbjct: 24 PCVLSCVMRGSPADFVGLR-AGDQILAVNEINVKKASHEDVVKLIGKCSGVLHMVIAE 80

>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 110

 Score = 52.0 bits (125), Expect = 5e-09
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 1/58 (1%)

Query: 2   PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
            GIFISR+   G A   G+  V D++LEVNG+ + G    +  + +    + + + V 
Sbjct: 46  EGIFISRVSEEGPAARAGVR-VGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRVW 102

>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 124

 Score = 52.1 bits (125), Expect = 5e-09
 Identities = 14/58 (24%), Positives = 29/58 (50%)

Query: 2   PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
             IF+  + P G A + G + + DE+LE+N  ++ G+S    + ++    S + +   
Sbjct: 51  MSIFVVGINPEGPAAADGRMRIGDELLEINNQILYGRSHQNASAIIKTAPSKVKLVFI 108

>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 107

 Score = 51.6 bits (124), Expect = 6e-09
 Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 4/72 (5%)

Query: 2   PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61
            GIF+  +  GG A+  G + VND+++EV+GI + G + +    ++     N+   +   
Sbjct: 40  LGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRNTKGNVRFVIG-- 97

Query: 62  NQRANMSVPRRG 73
             R   S P  G
Sbjct: 98  --REKPSGPSSG 107

>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A Length = 87

 Score = 50.7 bits (122), Expect = 6e-09
 Identities = 10/57 (17%), Positives = 23/57 (40%), Gaps = 1/57 (1%)

Query: 3  GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
           I ++++   G A+   L    D ++ +NG    G    +    +  + S L + + 
Sbjct: 27 PIMVTKVAERGKAKDADLR-PGDIIVAINGESAEGMLHAEAQSKIRQSPSPLRLQLD 82

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A Length = 391

 Score = 54.4 bits (130), Expect = 6e-09
 Identities = 11/76 (14%), Positives = 27/76 (35%), Gaps = 1/76 (1%)

Query: 3   GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPAN 62
           GIF++ ++    A   GL    D++L VN +       ++    ++       +T+    
Sbjct: 32  GIFVAGVLEDSPAAKEGL-EEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQK 90

Query: 63  QRANMSVPRRGSYSRT 78
           ++             +
Sbjct: 91  KKDVYRRIVESDVGDS 106

>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A Length = 91

 Score = 50.7 bits (122), Expect = 7e-09
 Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 1/57 (1%)

Query: 2  PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITV 58
          PG FI  +  GG A+  GL    D ++EVNG+ V  +  ++V D + ++  N+ + V
Sbjct: 27 PGSFIKEVQKGGPADLAGLE-DEDVIIEVNGVNVLDEPYEKVVDRIQSSGKNVTLLV 82

>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 116

 Score = 51.2 bits (123), Expect = 7e-09
 Identities = 14/57 (24%), Positives = 24/57 (42%)

Query: 3   GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
            I I  +   G A   G L   D++LEVNG+ +   S ++    +      + + V 
Sbjct: 44  AIVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNSSHEEAITALRQTPQKVRLVVY 100

>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A Length = 166

 Score = 52.5 bits (126), Expect = 7e-09
 Identities = 17/76 (22%), Positives = 34/76 (44%), Gaps = 2/76 (2%)

Query: 2   PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMM-VANSSNLIITVKP 60
            GIF+  +     A   GL    D+VL++NG   AG S D+   ++  A    + +T++ 
Sbjct: 27  NGIFVQLVQANSPASLVGLR-FGDQVLQINGENCAGWSSDKAHKVLKQAFGEKITMTIRD 85

Query: 61  ANQRANMSVPRRGSYS 76
                 +++ +  +  
Sbjct: 86  RPFERTITMHKDSTGH 101

>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A Length = 166

 Score = 41.0 bits (96), Expect = 8e-05
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 2   PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61
               I+ +V    A   GLL     + E+NG  V G    Q+ D++  + + + IT+ PA
Sbjct: 107 KNGKITSIVKDSSAARNGLL-TEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA 165

>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A Length = 192

 Score = 53.0 bits (127), Expect = 8e-09
 Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 3/85 (3%)

Query: 2   PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61
            G+FIS L+ GG A+S G L V DE++ +NG  ++  + ++V +++      + I V+  
Sbjct: 110 CGLFISHLIKGGQADSVG-LQVGDEIVRINGYSISSCTHEEVINLI-RTEKTVSIKVRHI 167

Query: 62  NQRANMSVPR-RGSYSRTSQLSSDS 85
                 S P    ++    Q  S+S
Sbjct: 168 GLIPVKSSPDEPLTWQYVDQFVSES 192

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A Length = 388

 Score = 54.2 bits (129), Expect = 9e-09
 Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 1   VPGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKP 60
           V    I  L+ GG+AE  G+  V   ++E+NG  V   + +++   +  +   + +   P
Sbjct: 314 VQNGIICSLMRGGIAERGGVR-VGHRIIEINGQSVVATAHEKIVQALSNSVGEIHMKTMP 372

Query: 61  ANQ 63
           A  
Sbjct: 373 AAM 375

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A Length = 388

 Score = 52.7 bits (125), Expect = 2e-08
 Identities = 13/75 (17%), Positives = 35/75 (46%), Gaps = 2/75 (2%)

Query: 2   PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMM--VANSSNLIITVK 59
           P + ++ ++ GG A  +G L++ D+++ +NG  + G  L     ++  + N + + + + 
Sbjct: 232 PTVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPLATCQGIIKGLKNQTQVKLNIV 291

Query: 60  PANQRANMSVPRRGS 74
                  + + R   
Sbjct: 292 SCPPVTTVLIKRPDL 306

>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens} Length = 128

 Score = 51.3 bits (123), Expect = 1e-08
 Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 3/75 (4%)

Query: 2   PGIFISRLVPGGLAESTGLLAVNDEVLEVNGI-LVAGKSLDQVTDMMVANSSNLIITVK- 59
             IF+  + PG +A+    L  ND++L +N   L    S  Q   ++   + +L + V  
Sbjct: 54  VDIFVKDVQPGSVADRDQRLKENDQILAINHTPLDQNISHQQAIALLQQTTGSLRLIVAR 113

Query: 60  -PANQRANMSVPRRG 73
            P + +++ S P  G
Sbjct: 114 EPVHTKSSTSGPSSG 128

>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens} Length = 97

 Score = 50.4 bits (121), Expect = 1e-08
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 1/58 (1%)

Query: 2  PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
           GIFISR+   G A   G+  V D++LEVNG+ + G    +  + +    + + + V 
Sbjct: 34 EGIFISRVSEEGPAARAGVR-VGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRVW 90

>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A Length = 90

 Score = 49.6 bits (119), Expect = 2e-08
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 2  PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITV 58
          PG +I  + PG  A  +GL    D ++EVNG  V G    +V   + A      + V
Sbjct: 28 PGQYIRSVDPGSPAARSGLR-AQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLV 83

>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 126

 Score = 50.7 bits (121), Expect = 2e-08
 Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 1/62 (1%)

Query: 2   PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61
             IF+ ++  GG A   GL    D +++VNG  V GK+  QV  ++  + + L ++V P 
Sbjct: 61  DTIFVKQVKEGGPAFEAGLC-TGDRIIKVNGESVIGKTYSQVIALIQNSDTTLELSVMPK 119

Query: 62  NQ 63
           + 
Sbjct: 120 DS 121

>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens} Length = 117

 Score = 50.5 bits (121), Expect = 2e-08
 Identities = 13/58 (22%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 2   PGIFISRLVPGGLAESTGLLAVNDEVLEVNGI-LVAGKSLDQVTDMMVANSSNLIITV 58
            GIF+  +  G +A   G L   D++L +NG  L    +  Q   ++      + + +
Sbjct: 49  LGIFVQEIQEGSVAHRDGRLKETDQILAINGQALDQTITHQQAISILQKAKDTVQLVI 106

>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 119

 Score = 50.3 bits (120), Expect = 2e-08
 Identities = 18/84 (21%), Positives = 32/84 (38%), Gaps = 8/84 (9%)

Query: 3   GIFISRLVPGGLAE-STGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61
            + +SR+ PG  A+     L   D+V+ +NG  +A  + DQV   + A+       +   
Sbjct: 42  PVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELM-- 99

Query: 62  NQRANMSVPRRGSYSRTSQLSSDS 85
                + V     Y    +    S
Sbjct: 100 -----LLVRPNAVYDVVEESGPSS 118

>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A Length = 108

 Score = 50.1 bits (120), Expect = 2e-08
 Identities = 12/46 (26%), Positives = 22/46 (47%)

Query: 2  PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMM 47
           GI+I  ++ GG   + G +   D +L+VN +     S D    ++
Sbjct: 33 GGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVL 78

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens} Length = 468

 Score = 53.0 bits (126), Expect = 2e-08
 Identities = 11/82 (13%), Positives = 29/82 (35%), Gaps = 1/82 (1%)

Query: 2   PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61
            GIF++ ++    A   G L   D++L VN +       ++    ++       +T+   
Sbjct: 23  VGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQ 81

Query: 62  NQRANMSVPRRGSYSRTSQLSS 83
            ++             +  + +
Sbjct: 82  KKKDVYRRIVESDVGDSFYIRT 103

>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} PDB: 3r69_A* Length = 95

 Score = 49.2 bits (118), Expect = 3e-08
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 2  PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITV 58
           G  I  + PG  AE+ GL   ND V+ VNG  V     D V +M+        + V
Sbjct: 29 KGQIIKDIEPGSPAEAAGLK-NNDLVVAVNGKSVEALDHDGVVEMIRKGGDQTTLLV 84

>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 106

 Score = 49.7 bits (119), Expect = 3e-08
 Identities = 15/57 (26%), Positives = 33/57 (57%), Gaps = 1/57 (1%)

Query: 2  PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITV 58
           G++++ + P G+A   G+L  +D ++EVNG  V   S ++V + +  + S ++  +
Sbjct: 32 KGVYMTDITPQGVAMRAGVL-ADDHLIEVNGENVEDASHEEVVEKVKKSGSRVMFLL 87

>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 49.3 bits (118), Expect = 3e-08
 Identities = 12/57 (21%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 3  GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
           + +S++  GG A  +  +   DE++ +NG  + G S  +   ++  +   L + V+
Sbjct: 36 PLTVSKIEDGGKAALSQKMRTGDELVNINGTPLYG-SRQEALILIKGSFRILKLIVR 91

>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A* Length = 109

 Score = 49.8 bits (119), Expect = 3e-08
 Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 1/66 (1%)

Query: 2   PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61
              ++  +  GG+A   GL  + D ++EVNG  V      QV +M+    + L++ V   
Sbjct: 45  ALQYLESVDEGGVAWRAGLR-MGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMV 103

Query: 62  NQRANM 67
            +  +M
Sbjct: 104 TRHPDM 109

>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1 Length = 117

 Score = 49.7 bits (119), Expect = 3e-08
 Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 4/74 (5%)

Query: 2   PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK-- 59
             I IS ++PGG A+  GLL  ND V+ VNG  +           +  +     I VK  
Sbjct: 46  TSIVISDVLPGGPAD--GLLQENDRVVMVNGTPMEDVLHSFAVQQLRKSGKIAAIVVKRP 103

Query: 60  PANQRANMSVPRRG 73
              Q A +S P  G
Sbjct: 104 RKVQVAPLSGPSSG 117

>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A Length = 127

 Score = 49.8 bits (119), Expect = 3e-08
 Identities = 17/46 (36%), Positives = 27/46 (58%)

Query: 2   PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMM 47
            GIFI  ++ GG A   G L +ND+++ VNG  + GKS  +  + +
Sbjct: 55  LGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETL 100

>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1 Length = 91

 Score = 48.9 bits (117), Expect = 3e-08
 Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 3  GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITV 58
           + +  +  GG AE  GL    D VL++N   V      ++   + +  S +I+ V
Sbjct: 25 PVRVQAVDSGGPAERAGLQ-QLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILLV 79

>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 49.4 bits (118), Expect = 3e-08
 Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 1/58 (1%)

Query: 2  PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
           GI++S++  G +A   G L   D++LE NGI +   +  Q   ++      + I  +
Sbjct: 42 GGIYVSKVTVGSIAHQAG-LEYGDQLLEFNGINLRSATEQQARLIIGQQCDTITILAQ 98

>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus} Length = 114

 Score = 49.4 bits (118), Expect = 4e-08
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 1  VPGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKP 60
            G  I  +  G  AE  GLL   D VL +NG+ V  +   QV +++  + +++ + V  
Sbjct: 37 TDGHLIRVIEEGSPAEKAGLL-DGDRVLRINGVFVDKEEHAQVVELVRKSGNSVTLLVLD 95

>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} PDB: 3nfl_A 2vph_A Length = 107

 Score = 49.0 bits (117), Expect = 4e-08
 Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 5/63 (7%)

Query: 3   GIFISRLVPGGLAE-STGLLAVNDEVLEVNGILVAGKSLDQVTDMMVA----NSSNLIIT 57
            + +SR+ PG  A+     L   D+V+ +NG  +A  + DQV   + A    +S  L++ 
Sbjct: 44  PVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELMLL 103

Query: 58  VKP 60
           V+P
Sbjct: 104 VRP 106

>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A Length = 170

 Score = 50.3 bits (120), Expect = 4e-08
 Identities = 14/58 (24%), Positives = 26/58 (44%)

Query: 2   PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
            GIF+  +  GG A   G + VND ++EV+G  + G +      ++      +   + 
Sbjct: 111 LGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNTKGRVRFMIG 168

>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A Length = 94

 Score = 48.8 bits (116), Expect = 5e-08
 Identities = 14/60 (23%), Positives = 27/60 (45%), Gaps = 1/60 (1%)

Query: 1  VPGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKP 60
          +  ++++ +   GLA   GL    DE+LE+N       +   + D +   S  L++   P
Sbjct: 34 IRRLYVNSVKETGLASKKGLK-AGDEILEINNRAADALNSSMLKDFLSQPSLGLLVRTYP 92

>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} Length = 106

 Score = 49.0 bits (117), Expect = 5e-08
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 1  VPGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKP 60
            G  I  +  G  AE  GLL   D VL +NG+ V  +   QV +++  + +++ + V  
Sbjct: 25 TDGHLIRVIEEGSPAEKAGLL-DGDRVLRINGVFVDKEEHAQVVELVRKSGNSVTLLVLD 83

>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 48.5 bits (116), Expect = 5e-08
 Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 6/71 (8%)

Query: 3  GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPAN 62
           + +  +  GG A   G L   D++L++N       S ++  D++     +L ITV    
Sbjct: 32 PLTVVAVTAGGSAH--GKLFPGDQILQMNNEPAEDLSWERAVDILREAEDSLSITVV--- 86

Query: 63 QRANMSVPRRG 73
           R   S P  G
Sbjct: 87 -RCTSSGPSSG 96

>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A Length = 139

 Score = 49.3 bits (117), Expect = 6e-08
 Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 2   PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITV 58
            GI+++R+  GG AE  GL  + D++++VNG  +   + DQ    +   S  ++  +
Sbjct: 64  KGIYVTRVSEGGPAEIAGLQ-IGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLL 119

>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens} Length = 96

 Score = 48.1 bits (115), Expect = 7e-08
 Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 1/59 (1%)

Query: 2  PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKP 60
          PG F+  + PG  A+  G+    D ++ V G  V G   ++    +    S + +TV  
Sbjct: 30 PGQFLWEVDPGLPAKKAGMQ-AGDRLVAVAGESVEGLGHEETVSRIQGQGSCVSLTVVD 87

>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A Length = 96

 Score = 48.1 bits (115), Expect = 7e-08
 Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 1/59 (1%)

Query: 2  PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKP 60
             F++R+     A+  GL    D +  VNG+ V G    ++ D++ A+ + L +    
Sbjct: 37 MVTFVARVHESSPAQLAGLT-PGDTIASVNGLNVEGIRHREIVDIIKASGNVLRLETLY 94

>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A Length = 99

 Score = 48.2 bits (115), Expect = 7e-08
 Identities = 10/59 (16%), Positives = 23/59 (38%), Gaps = 1/59 (1%)

Query: 2  PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKP 60
              +  +  G  A+  GL    D +  +NG  V G     V ++++ + + + +    
Sbjct: 34 VHHVVWSVEDGSPAQEAGLR-AGDLITHINGESVLGLVHMDVVELLLKSGNKISLRTTA 91

>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens} Length = 128

 Score = 48.7 bits (116), Expect = 1e-07
 Identities = 23/104 (22%), Positives = 40/104 (38%), Gaps = 9/104 (8%)

Query: 2   PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61
           PG FI  + P   AE++GL    D ++EVNG+ + GK    V   + A      + V   
Sbjct: 33  PGQFIRSVDPDSPAEASGLR-AQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKLLV--- 88

Query: 62  NQRANMSVPRRGSYSRTSQLSSDSHQSTQSIATTNNSEDDEQDE 105
                +       + +   + S  H +        N E  +++ 
Sbjct: 89  -----VDRETDEFFKKCRVIPSQEHLNGPLPVPFTNGEIQKENS 127

>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 124

 Score = 48.3 bits (115), Expect = 1e-07
 Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 1/58 (1%)

Query: 2   PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
            GI+IS + P  +A   G +   D ++++NGI V  +  + V  +    + N  + + 
Sbjct: 48  IGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQNRE-EAVALLTSEENKNFSLLIA 104

>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 102

 Score = 47.7 bits (114), Expect = 1e-07
 Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 1/59 (1%)

Query: 2  PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKP 60
           G  I  + PG  AE+ GL   ND V+ VNG  V     D V +M+        + V  
Sbjct: 30 KGQIIKDIEPGSPAEAAGLK-NNDLVVAVNGKSVEALDHDGVVEMIRKGGDQTTLLVLD 87

>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A Length = 124

 Score = 47.9 bits (114), Expect = 2e-07
 Identities = 11/58 (18%), Positives = 24/58 (41%), Gaps = 1/58 (1%)

Query: 2   PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
            GIF++ ++    A   GL    D++L VN +       ++    ++       +T+ 
Sbjct: 51  VGIFVAGVLEDSPAAKEGLE-EGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTIL 107

>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1 Length = 100

 Score = 47.0 bits (112), Expect = 2e-07
 Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 3  GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITV 58
           + +  +  GG AE  GL    D VL++N   V      ++   + +  S +I+ V
Sbjct: 37 PVRVQAVDSGGPAERAGLQ-QLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILLV 91

>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A Length = 103

 Score = 47.0 bits (112), Expect = 2e-07
 Identities = 13/58 (22%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 2  PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
           GIF++R+ P G A    LL   D++++ NG         Q   ++    + + + + 
Sbjct: 43 DGIFVTRVQPEGPAS--KLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIV 98

>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A Length = 95

 Score = 46.6 bits (111), Expect = 3e-07
 Identities = 13/58 (22%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 2  PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
           GIF++R+ P G A    LL   D++++ NG         Q   ++    + + + + 
Sbjct: 35 DGIFVTRVQPEGPAS--KLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIV 90

>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A Length = 93

 Score = 45.8 bits (109), Expect = 4e-07
 Identities = 13/57 (22%), Positives = 29/57 (50%), Gaps = 2/57 (3%)

Query: 2  PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITV 58
            + +  + PGG A   G+    D +++VNG +V   S  +V   ++ + + + +T+
Sbjct: 29 RIVLVQSVRPGGAAMKAGVK-EGDRIIKVNGTMVTNSSHLEVVK-LIKSGAYVALTL 83

>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus} Length = 132

 Score = 46.9 bits (111), Expect = 5e-07
 Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 2   PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61
              ++  +  GG+A   GL  + D ++EVNG  V      QV +M+    + L++ V   
Sbjct: 65  ALQYLESVDEGGVAWRAGLR-MGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMV 123

Query: 62  NQR 64
            + 
Sbjct: 124 TRH 126

>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens} Length = 216

 Score = 48.2 bits (114), Expect = 5e-07
 Identities = 23/104 (22%), Positives = 35/104 (33%), Gaps = 1/104 (0%)

Query: 2   PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61
           PG FI  + P   AE++GL    D ++EVNG+ + GK    V   + A      + V   
Sbjct: 33  PGQFIRSVDPDSPAEASGLR-AQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKLLVVDR 91

Query: 62  NQRANMSVPRRGSYSRTSQLSSDSHQSTQSIATTNNSEDDEQDE 105
                    R                +   I   N+ E   +  
Sbjct: 92  ETDEFFKKCRVIPSQEHLNGPLPVPFTNGEIQKENSREALAEAA 135

>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A Length = 195

 Score = 46.9 bits (110), Expect = 1e-06
 Identities = 21/104 (20%), Positives = 39/104 (37%), Gaps = 3/104 (2%)

Query: 2   PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITV-KP 60
            GIF++R+ P G A    LL   D++++ NG         Q   ++    + + + + + 
Sbjct: 24  DGIFVTRVQPEGPAS--KLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVRE 81

Query: 61  ANQRANMSVPRRGSYSRTSQLSSDSHQSTQSIATTNNSEDDEQD 104
               A   +  R      S   S    + + +A T  S     D
Sbjct: 82  VGNGAKQEIRVRVEKDGGSGGVSSVPTNLEVVAATPTSLLISWD 125

>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens} Length = 104

 Score = 44.8 bits (106), Expect = 1e-06
 Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 1/57 (1%)

Query: 2   PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITV 58
               I ++     A   GL    D +  +NG+   G +  QV D++ ++ + L I  
Sbjct: 48  MFTLICKIQEDSPAHCAGLQ-AGDVLANINGVSTEGFTYKQVVDLIRSSGNLLTIET 103

>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens} Length = 109

 Score = 43.3 bits (102), Expect = 5e-06
 Identities = 8/53 (15%), Positives = 20/53 (37%), Gaps = 1/53 (1%)

Query: 3  GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLI 55
           + +  L P   A   G     D ++ +  +     +L +V  ++ +   + I
Sbjct: 45 PVQVHFLDPYCSASVAGA-REGDYIVSIQLVDCKWLTLSEVMKLLKSFGEDEI 96

>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1 Length = 111

 Score = 42.5 bits (100), Expect = 1e-05
 Identities = 7/53 (13%), Positives = 20/53 (37%), Gaps = 1/53 (1%)

Query: 3  GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLI 55
           + +  L P   A   G     D ++ + G+     ++ +V  ++ +     +
Sbjct: 37 PVQVHFLDPHCSASLAGAK-EGDYIVSIQGVDCKWLTVSEVMKLLKSFGGEEV 88

>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 118

 Score = 41.7 bits (97), Expect = 2e-05
 Identities = 16/76 (21%), Positives = 33/76 (43%), Gaps = 3/76 (3%)

Query: 1   VPGIFISRLVPGGLA-ESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
              + +  +    ++  +   +   D +LE+NG  V    +++V D +   S  L + ++
Sbjct: 43  ATTVQVKEVNRMHISPNNRNAIHPGDRILEINGTPVRTLRVEEVEDAIKQTSQTLQLLIE 102

Query: 60  --PANQRANMSVPRRG 73
             P  QR + S P  G
Sbjct: 103 HDPVPQRLDQSGPSSG 118

>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens} Length = 88

 Score = 38.0 bits (89), Expect = 3e-04
 Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 12/72 (16%)

Query: 2  PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61
           G  + ++V      S GL    D ++EVN   V   + +QV DM+V +         P 
Sbjct: 27 GGQRVKQIVDS--PRSRGLK-EGDLIVEVNKKNVQALTHNQVVDMLVES---------PK 74

Query: 62 NQRANMSVPRRG 73
               + V R+ 
Sbjct: 75 GSEVTLLVQRQT 86

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	241
3e17_A	88	Tight junction protein ZO-2; domain swapping, alte	99.27
1r6j_A	82	Syntenin 1; PDZ, membrane protein; 0.73A {Homo sap	99.27
3o46_A	93	Maguk P55 subfamily member 7; PDZ domain, structur	99.25
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	99.25
2ejy_A	97	55 kDa erythrocyte membrane protein; GPC, maguk, P	99.22
1va8_A	113	Maguk P55 subfamily member 5; PDZ domain, palmitoy	99.21
1nf3_C	128	PAR-6B; semi-CRIB motif, switch I and II, PDZ doma	99.21
3cbz_A	108	Dishevelled-2; PDZ domain, phage derived high affi	99.2
4amh_A	106	Disks large homolog 1; permutation, protein foldin	99.19
2iwo_A	120	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	99.19
1kwa_A	88	Hcask/LIN-2 protein; PDZ domain, neurexin, syndeca	99.19
2v90_A	96	PDZ domain-containing protein 3; membrane, protein	99.18
2i1n_A	102	Discs, large homolog 3; DLG3, PDZ, PDZ domain, sig	99.17
1ujd_A	117	KIAA0559 protein; PDZ domain, structural genomics,	99.16
3gge_A	95	PDZ domain-containing protein GIPC2; structural ge	99.16
1v62_A	117	KIAA1719 protein; structural genomics, synaptic tr	99.15
2fne_A	117	Multiple PDZ domain protein; structural protein, s	99.15
3cyy_A	92	Tight junction protein ZO-1; protein-ligand comple	99.15
2o2t_A	117	Multiple PDZ domain protein; structural protein, s	99.14
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	99.14
2pkt_A	91	PDZ and LIM domain protein 1; PDZ domain, structur	99.14
2he4_A	90	Na(+)/H(+) exchange regulatory cofactor NHE-RF2; p	99.14
3b76_A	118	E3 ubiquitin-protein ligase LNX; PDZ, bound ligand	99.13
1wi4_A	109	Synip, syntaxin binding protein 4; syntaxin4-inter	99.13
3qe1_A	107	Sorting nexin-27, G protein-activated inward RECT	99.13
2awx_A	105	Synapse associated protein 97; membrane protein, s	99.13
2e7k_A	91	Maguk P55 subfamily member 2; PDZ domain, MPP2 pro	99.13
2vwr_A	95	Ligand of NUMB protein X 2; protein-binding, metal	99.13
2pa1_A	87	PDZ and LIM domain protein 2; PDZ domain, structur	99.13
2jil_A	97	GRIP1 protein, glutamate receptor interacting prot	99.13
2byg_A	117	Channel associated protein of synapse-110; DLG2, P	99.12
2g5m_B	113	Neurabin-2; spinophilin, PDZ domain, CNS, synaptic	99.12
2eno_A	120	Synaptojanin-2-binding protein; mitochondrial oute	99.12
2kpk_A	129	Membrane-associated guanylate kinase, WW and PDZ c	99.12
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	99.12
2qg1_A	92	Multiple PDZ domain protein; MPDZ, MUPP1, structur	99.11
2vsp_A	91	PDZ domain-containing protein 1; membrane, cytopla	99.11
2fcf_A	103	Multiple PDZ domain protein; adaptor molecule, pro	99.11
2opg_A	98	Multiple PDZ domain protein; structural protein, s	99.11
1um1_A	110	KIAA1849 protein, RSGI RUH-007; PDZ domain, human	99.11
1n7e_A	97	AMPA receptor interacting protein GRIP; PDZ, prote	99.11
1g9o_A	91	NHE-RF; PDZ domain, complex, signaling protein; 1.	99.11
2fe5_A	94	Presynaptic protein SAP102; PDZ domain, DLG3, huma	99.1
2q3g_A	89	PDZ and LIM domain protein 7; structural genomics,	99.1
3axa_A	106	Afadin, nectin-3, protein AF-6; PDZ domain, fusion	99.1
1d5g_A	96	Human phosphatase HPTP1E; protein-peptide complex,	99.1
3khf_A	99	Microtubule-associated serine/threonine-protein ki	99.1
2db5_A	128	INAD-like protein; PDZ domain, hinadl, PALS1- asso	99.1
1rgw_A	85	ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK,	99.1
2ego_A	96	General receptor for phosphoinositides 1- associat	99.09
1wg6_A	127	Hypothetical protein (riken cDNA 2810455B10); stru	99.09
3r68_A	95	Na(+)/H(+) exchange regulatory cofactor NHE-RF3; P	99.09
1wf7_A	103	Enigma homologue protein; PDZ domain, structural g	99.09
1ihj_A	98	INAD; intermolecular disulfide bond, PDZ domain, s	99.09
2d92_A	108	INAD-like protein; PDZ domain, inadl protein, hina	99.09
1qau_A	112	Neuronal nitric oxide synthase (residues 1-130); b	99.08
2uzc_A	88	Human pdlim5, PDZ and LIM domain 5; metal-binding,	99.08
2f5y_A	91	Regulator of G-protein signalling 3 isoform 1; PDZ	99.07
3egg_C	170	Spinophilin; PP1, serine/threonine phosphatase, po	99.07
2dmz_A	129	INAD-like protein; PDZ domain, inadl protein, hina	99.07
1wf8_A	107	Neurabin-I; PDZ domain, structural genomics, NPPSF	99.07
1vb7_A	94	PDZ and LIM domain 2; PDZ domain PDZ-LIM protein,	99.07
2daz_A	124	INAD-like protein; PDZ domain, inadl protein, hina	99.07
2dc2_A	103	GOPC, golgi associated PDZ and coiled-coil motif c	99.07
1uew_A	114	Membrane associated guanylate kinase inverted-2 (M	99.07
2jik_A	101	Synaptojanin-2 binding protein; transmembrane, out	99.07
3l4f_D	132	SH3 and multiple ankyrin repeat domains protein 1;	99.06
2la8_A	106	Inactivation-NO-after-potential D protein, KON-TI	99.06
2qkv_A	96	Inactivation-NO-after-potential D protein; PDZ dom	99.06
2i04_A	85	Membrane-associated guanylate kinase, WW and PDZ d	99.06
2jre_A	108	C60-1 PDZ domain peptide; de novo protein; NMR {Sy	99.06
2rcz_A	81	Tight junction protein ZO-1; PDZ, domain-swapping,	99.06
4e34_A	87	Golgi-associated PDZ and coiled-coil motif-contai	99.06
1uhp_A	107	Hypothetical protein KIAA1095; PDZ domain, semapho	99.05
2iwq_A	123	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	99.05
1v5l_A	103	PDZ and LIM domain 3; actinin alpha 2 associated L	99.05
1x6d_A	119	Interleukin-16; PDZ domain, lymphocyte chemoattrac	99.05
2w4f_A	97	Protein LAP4; structural protein, phosphoprotein,	99.05
2yt7_A	101	Amyloid beta A4 precursor protein-binding family A	99.05
2dlu_A	111	INAD-like protein; PDZ domain, inadl protein, hina	99.05
3ngh_A	106	PDZ domain-containing protein 1; adaptor protein,	99.05
1qav_A	90	Alpha-1 syntrophin (residues 77-171); beta-finger,	99.05
2koj_A	111	Partitioning defective 3 homolog; PDZ domain, stru	99.05
1uf1_A	128	KIAA1526 protein; PDZ domain, structural genomics,	99.04
3hpk_A	125	Protein interacting with PRKCA 1; oxidized, PDZ do	99.04
1q7x_A	108	PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, str	99.04
1ufx_A	103	KIAA1526 protein; PDZ domain, structural genomics,	99.04
1x5q_A	110	LAP4 protein; PDZ domain, scribble homolog protein	99.04
1y7n_A	90	Amyloid beta A4 precursor protein-binding family A	99.04
2dkr_A	93	LIN-7 homolog B; LIN-7B, PDZ, structural genomics,	99.03
1uep_A	103	Membrane associated guanylate kinase inverted-2 (M	99.03
2r4h_A	112	Membrane-associated guanylate kinase, WW and PDZ c	99.03
1q3o_A	109	Shank1; PDZ, GKAP, peptide binding protein; 1.80A	99.03
1m5z_A	91	GRIP, AMPA receptor interacting protein; six beta-	99.03
1wha_A	105	KIAA0147 protein, scribble; PDZ domain, cellular s	99.03
3i4w_A	104	Disks large homolog 4; alpha and beta protein, alt	99.03
1ueq_A	123	Membrane associated guanylate kinase inverted-2 (M	99.02
2q9v_A	90	Membrane-associated guanylate kinase, WW and PDZ c	99.02
1wi2_A	104	Riken cDNA 2700099C19; structural genomics, riken	99.02
1b8q_A	127	Protein (neuronal nitric oxide synthase); PDZ doma	99.02
2djt_A	104	Unnamed protein product; PDZ domain, structural ge	99.02
1wfg_A	131	Regulating synaptic membrane exocytosis protein 2;	99.02
2dm8_A	116	INAD-like protein; PDZ domain, inadl protein, hina	99.01
2eeh_A	100	PDZ domain-containing protein 7; structural genomi	99.01
3nfk_A	107	Tyrosine-protein phosphatase non-receptor type 4;	99.01
2d90_A	102	PDZ domain containing protein 1; structural genomi	99.01
2eeg_A	94	PDZ and LIM domain protein 4; PDZ domain, structur	99.01
2iwn_A	97	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	99.0
2eei_A	106	PDZ domain-containing protein 1; regulatory factor	99.0
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	99.0
1wfv_A	103	Membrane associated guanylate kinase inverted-2; a	99.0
2edz_A	114	PDZ domain-containing protein 1; CFTR-associated p	99.0
2vz5_A	139	TAX1-binding protein 3; WNT signaling pathway, pro	99.0
3sfj_A	104	TAX1-binding protein 3; PDZ:peptide complex, signa	99.0
2ehr_A	117	INAD-like protein; PDZ domain, inadl protein, hina	98.99
1v5q_A	122	GRIP1 homolog, glutamate receptor interacting prot	98.99
1i16_A	130	Interleukin 16, LCF; cytokine, lymphocyte chemoatt	98.99
2vsv_A	109	Rhophilin-2; scaffold protein, RHO GTPase binding,	98.99
1uit_A	117	Human discs large 5 protein; PDZ domain, HDLG5, ma	98.99
2kv8_A	83	RGS12, regulator of G-protein signaling 12; PDZ do	98.99
2jxo_A	98	Ezrin-radixin-moesin-binding phosphoprotein 50; nh	98.98
2kom_A	121	Partitioning defective 3 homolog; PAR-3B, PDZ doma	98.98
1whd_A	100	RGS3, regulator of G-protein signaling 3; PDZ doma	98.98
2cs5_A	119	Tyrosine-protein phosphatase, non-receptor type 4;	98.96
2eaq_A	90	LIM domain only protein 7; conserved hypothetical	98.96
2csj_A	117	TJP2 protein; PDZ domain, structural genomics, NPP	98.95
2dls_A	93	PDZ-rhogef, RHO guanine nucleotide exchange factor	98.94
2gzv_A	114	PRKCA-binding protein; protein kinase C, PDZ domai	98.94
2kjd_A	128	Sodium/hydrogen exchange regulatory cofactor NHE-	98.94
1mfg_A	95	ERB-B2 interacting protein; PDZ domain, protein-pe	98.93
2z17_A	104	Pleckstrin homology SEC7 and coiled-coil domains-	98.93
2edp_A	100	Fragment, shroom family member 4; APX/shroom famil	98.93
2yuy_A	126	RHO GTPase activating protein 21; PDZ domain, stru	98.93
2qbw_A	195	PDZ-fibronectin fusion protein; fibronectin PDZ, u	98.92
1v6b_A	118	Harmonin isoform A1; structural genomics, usher sy	98.92
1wif_A	126	RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, s	98.92
3tsv_A	124	Tight junction protein ZO-1; PDZ, scaffolding, JAM	98.9
1uju_A	111	Scribble; PDZ domain, cellular signaling, structur	98.9
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	98.9
3k1r_A	192	Harmonin; protein-protein complex, alternative spl	98.89
1z87_A	263	Alpha-1-syntrophin; protein binding; NMR {Mus musc	98.89
2yub_A	118	LIMK-2, LIM domain kinase 2; PDZ domain, structura	98.89
1n7t_A	103	99-MER peptide of densin-180-like protein; PDZ dom	98.87
1tp5_A	119	Presynaptic density protein 95; PDZ-peptide ligand	98.87
2pzd_A	113	Serine protease HTRA2; PDZ domain, apoptosis, mito	98.87
3kzd_A	94	TIAM-1, T-lymphoma invasion and metastasis-inducin	98.86
1wh1_A	124	KIAA1095 protein; PDZ domain, structural genomics,	98.85
1x5n_A	114	Harmonin; PDZ domain, usher syndrome 1C protein, a	98.85
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	98.84
1uez_A	101	KIAA1526 protein; PDZ domain, structural genomics,	98.84
2h2b_A	107	Tight junction protein ZO-1; PDZ domain, phage der	98.82
3qik_A	101	Phosphatidylinositol 3,4,5-trisphosphate-dependen	98.81
2d8i_A	114	T-cell lymphoma invasion and metastasis 1 variant;	98.81
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	98.81
3bpu_A	88	Membrane-associated guanylate kinase, WW and PDZ c	98.81
1um7_A	113	Synapse-associated protein 102; PDZ, discs large h	98.81
2edv_A	96	FERM and PDZ domain-containing protein 1; cytoskel	98.81
1vae_A	111	Rhophilin 2, rhophilin, RHO GTPase binding protein	98.81
3i18_A	100	LMO2051 protein; alpha-beta protein, structural ge	98.79
2krg_A	216	Na(+)/H(+) exchange regulatory cofactor NHE-RF1; a	98.78
2kjp_A	91	Uncharacterized protein YLBL; mixed alpha-beta pro	98.76
1ujv_A	96	Membrane associated guanylate kinase inverted-2 (M	98.76
2p3w_A	112	Probable serine protease HTRA3; PDZ domain, phage	98.75
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	98.74
1w9e_A	166	Syntenin 1; cell adhesion, adhesion/complex, PDZ d	98.74
2kl1_A	94	YLBL protein; structure genomics, structural genom	98.73
2l97_A	134	HTRA, putative serine protease; HTRA-PDZ, protein	98.73
2zpm_A	91	Regulator of sigma E protease; metalloproteinase,	98.73
3soe_A	113	Membrane-associated guanylate kinase, WW and PDZ c	98.71
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	98.71
3id1_A	95	Regulator of sigma E protease; hydrolase, cell inn	98.7
2i6v_A	87	General secretion pathway protein C; EPSC, GSPC, P	98.7
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	98.7
2lob_A	112	Golgi-associated PDZ and coiled-coil motif-contai	98.15
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	98.65
2i4s_A	105	General secretion pathway protein C; EPSC, GSPC, P	98.56
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	98.55
3stj_A	345	Protease DEGQ; serine protease, PDZ domain, protea	98.51
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	98.49
1fc6_A	388	Photosystem II D1 protease; D1 C-terminal processi	98.48
1te0_A	318	Protease DEGS; two domains, serine protease, PDZ,	98.47
1lcy_A	325	HTRA2 serine protease; apoptosis, PDZ domain, casp	98.46
4a8c_A	436	Periplasmic PH-dependent serine endoprotease DEGQ;	98.43
2hga_A	125	Conserved protein MTH1368; GFT structural genomics	98.4
1y8t_A	324	Hypothetical protein RV0983; serine protease, stru	98.39
3pv2_A	451	DEGQ; trypsin fold, PDZ domain, chaperone protease	98.36
3qo6_A	348	Protease DO-like 1, chloroplastic; protease, HTRA,	98.36
3rle_A	209	Golgi reassembly-stacking protein 2; PDZ, tether,	98.3
3pv2_A	451	DEGQ; trypsin fold, PDZ domain, chaperone protease	98.3
4a8c_A	436	Periplasmic PH-dependent serine endoprotease DEGQ;	98.3
3rle_A	209	Golgi reassembly-stacking protein 2; PDZ, tether,	98.22
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	98.19
3num_A	332	Serine protease HTRA1; DEGP, hydrolase; 2.75A {Hom	98.18
1w9e_A	166	Syntenin 1; cell adhesion, adhesion/complex, PDZ d	98.12
4fgm_A	597	Aminopeptidase N family protein; structural genomi	98.07
3k50_A	403	Putative S41 protease; structural genomics, joint	97.93
1ky9_A	448	Protease DO, DEGP, HTRA; protein quality control,	97.93
1ky9_A	448	Protease DO, DEGP, HTRA; protein quality control,	97.89
1k32_A	1045	Tricorn protease; protein degradation, substrate g	97.64
4fln_A	539	Protease DO-like 2, chloroplastic; protease, DEG,	97.31
4fln_A	539	Protease DO-like 2, chloroplastic; protease, DEG,	96.7
3tvt_A	292	Disks large 1 tumor suppressor protein; DLG, SRC-h	90.19
4dey_A	337	Voltage-dependent L-type calcium channel subunit;	85.71
1wmh_B	86	Partitioning defective-6 homolog alpha; kinase, PB	82.66

>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens}

Probab=99.27  E-value=1.7e-11  Score=90.81  Aligned_cols=62  Identities=24%  Similarity=0.396  Sum_probs=55.7

Q ss_pred             cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCCcc
Q psy16075          3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQR   64 (241)
Q Consensus         3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~q~   64 (241)
                      |++|.+|.++|||+++|.|++||+|++|||+++.++++++++++|+...+.+.|++.+....
T Consensus        22 gv~V~~V~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~i~~~~~~v~L~v~~~~~~   83 (88)
T 3e17_A           22 QIFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLTDARKLIEKSRGKLQLVVLRDLEH   83 (88)
T ss_dssp             EEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHTTTEEEEEECCC---
T ss_pred             CEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEeCCCcc
Confidence            68999999999999999559999999999999999999999999999988999999886543

>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A

Probab=99.27  E-value=1.4e-11  Score=92.48  Aligned_cols=56  Identities=29%  Similarity=0.440  Sum_probs=51.9

Q ss_pred             EEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecC
Q psy16075          5 FISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA   61 (241)
Q Consensus         5 fIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~   61 (241)
                      .|.++.+++||+++|+ ++||+|++|||+++.+++|++++++|+..+..|+|+|.|.
T Consensus        26 ~I~~v~~gspA~~aGl-~~GD~Il~VNG~~v~~~~~~evv~llr~~g~~V~L~v~p~   81 (82)
T 1r6j_A           26 KITSIVKDSSAARNGL-LTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA   81 (82)
T ss_dssp             EEEEECTTSHHHHHTC-CSSEEEEEETTEECTTCCHHHHHHHHHHSCSEEEEEEEEC
T ss_pred             EEEEecCCCHHHHcCC-CCCCEEEEECCEEcCCCCHHHHHHHHhcCCCEEEEEEEeC
Confidence            3789999999999997 8999999999999999999999999997777899999874

>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} SCOP: b.36.1.0

Probab=99.25  E-value=2.7e-11  Score=89.61  Aligned_cols=62  Identities=29%  Similarity=0.599  Sum_probs=55.9

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCCc
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQ   63 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~q   63 (241)
                      .+++|.+|.+++||+++|.|++||+|++|||+++.++++++++++|+...+.+.|+|.+..+
T Consensus        28 ~~~~V~~v~~gspA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~~   89 (93)
T 3o46_A           28 GAIIVARIMRGGAADRSGLIHVGDELREVNGIPVEDKRPEEIIQILAQSQGAITFKIIPGSK   89 (93)
T ss_dssp             CCEEEEEECTTSHHHHHTCCCTTCEEEEETTEESTTSCHHHHHHHHHHCCEEEEEEEECC--
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEeCCC
Confidence            47999999999999999955999999999999999999999999999888889999998654

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=99.25  E-value=2.1e-11  Score=120.60  Aligned_cols=139  Identities=19%  Similarity=0.178  Sum_probs=97.8

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCCcccc-cc----cccCCCCC
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQRAN-MS----VPRRGSYS   76 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~q~~~-~~----~~R~~~~~   76 (241)
                      .|++|..|.++|+|+++|.|++||+|++|||++|.++++++++++|+..++.|.|+|.+...... +.    ..|..-++
T Consensus       331 ~gv~V~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~~~~~~e~~~~l~~~~~~v~L~v~r~~~~~~~~~~~~~~~~~~~~~  410 (721)
T 2xkx_A          331 EGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEEYSRFEAKIHDLREQLMN  410 (721)
T ss_pred             CCeEEEEeCCCChHHhcCCCccCCEEEEECCEECCCCCHHHHHHHHHhcCCeEEEEEEeCchhhhhhhhhhhhhhhhccc
Confidence            47999999999999999955999999999999999999999999999877788998886543211 11    01110010


Q ss_pred             CCCCCCCCCCCCCcCcccCCCCCCcchhhhhhcccccceeecccCCCCcccceeeeEEEEEeecccccchhccccc
Q psy16075         77 RTSQLSSDSHQSTQSIATTNNSEDDEQDEVVDLTGITLEICRIEPSTNSDIFERTKIVFVFTMLSKTTKWMSDMNG  152 (241)
Q Consensus        77 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~t~s~~~~~~~i~~~~~~~~~~~~~~~~~~~  152 (241)
                      .  ..++++ .+.  .     ....+.-.|+++..+....++-+| .....|.+++|+++....+ ..||++...+
T Consensus       411 ~--s~~~g~-~~~--~-----~~~~~~~~vrAl~dy~~~~d~~~p-~~~LsF~~GDil~v~~~~~-~~WW~a~~~~  474 (721)
T 2xkx_A          411 S--SLGSGT-ASL--R-----SNPKRGFYIRALFDYDKTKDCGFL-SQALSFRFGDVLHVIDAGD-EEWWQARRVH  474 (721)
T ss_pred             c--cccCCc-ccc--c-----cccccceeEEEeeccCcCCCCCCc-cccccccCCCEEEEeecCC-CCeEEEEECC
Confidence            0  011111 000  0     011234557788887776666667 4568999999999999877 7999998763

>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A

Probab=99.22  E-value=2.8e-11  Score=92.74  Aligned_cols=62  Identities=32%  Similarity=0.541  Sum_probs=56.0

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCCc
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQ   63 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~q   63 (241)
                      .|++|.+|.+++||+++|+|++||+|++|||+++.+++++++.++|+...+.+.|+|.+..|
T Consensus        36 ~gv~V~~V~~gspA~~aG~L~~GD~Il~ING~~v~~~~~~~~~~~l~~~~~~v~L~V~~~~~   97 (97)
T 2ejy_A           36 QSCTVARILHGGMIHRQGSLHVGDEILEINGTNVTNHSVDQLQKAMKETKGMISLKVIPNQQ   97 (97)
T ss_dssp             CCEEEEEECSSSHHHHHTCCCTTCEEEEETTBCCCSSCSHHHHHHHHHCCEEEEEEEECCCC
T ss_pred             CCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCC
Confidence            37999999999999999955999999999999999889999999999877679999987643

>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.21  E-value=5.6e-11  Score=91.56  Aligned_cols=63  Identities=40%  Similarity=0.663  Sum_probs=58.2

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCCcc
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQR   64 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~q~   64 (241)
                      .|++|..|.+++||+++|+|++||+|++|||++|.+++++++..+|+...+.+.|+|.+.++.
T Consensus        48 ~gv~V~~V~~~spA~~aGll~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~~  110 (113)
T 1va8_A           48 DSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMHGTLTFVLIPSSGP  110 (113)
T ss_dssp             SSEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCEEEEEEEECCCCC
T ss_pred             CCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCcc
Confidence            478999999999999999889999999999999999999999999988877899999987764

>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A

Probab=99.21  E-value=6.1e-11  Score=93.34  Aligned_cols=62  Identities=90%  Similarity=1.246  Sum_probs=57.3

Q ss_pred             cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCCcc
Q psy16075          3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQR   64 (241)
Q Consensus         3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~q~   64 (241)
                      |++|..|.++|||+++|+|++||+|++|||+++.++++++++.+|+..+..+.|+|.+.+++
T Consensus        66 gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~~  127 (128)
T 1nf3_C           66 GIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRPANQR  127 (128)
T ss_dssp             EEEEEEECTTCHHHHHTCCCTTCEEEEETTEESTTCCHHHHHHHHHHTTTSEEEEEECCCCC
T ss_pred             CEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCcC
Confidence            79999999999999999659999999999999999999999999998878899999987654

>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A

Probab=99.20  E-value=6.2e-11  Score=90.82  Aligned_cols=62  Identities=23%  Similarity=0.405  Sum_probs=55.5

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhC---CCcEEEEEecCCc
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVAN---SSNLIITVKPANQ   63 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKss---sg~VtLtV~p~~q   63 (241)
                      .|++|.+|.+++||+++|.|++||+|++|||+++.+++|++++++|+..   .+.|.|+|.+..+
T Consensus        33 ~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~~~v~l~v~R~~~   97 (108)
T 3cbz_A           33 GGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLRDIVHKPGPIVLTVAKSGG   97 (108)
T ss_dssp             CEEEEEEECTTSHHHHHCCCCTTCEEEEETTEETTSCCHHHHHHHHHHHHTSSSCEEEEEECCCC
T ss_pred             CCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhcccCCCeEEEEEEeCCC
Confidence            4799999999999999995599999999999999999999999999876   3479999987654

>4amh_A Disks large homolog 1; permutation, protein folding, structural protein; 2.30A {Homo sapiens}

Probab=99.19  E-value=9.2e-11  Score=89.57  Aligned_cols=61  Identities=20%  Similarity=0.444  Sum_probs=56.3

Q ss_pred             cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCCc
Q psy16075          3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQ   63 (241)
Q Consensus         3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~q   63 (241)
                      |++|..|.+++||+++|.|++||+|++|||+++.++++++++.+++..++.+.|+|.+.++
T Consensus        33 gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~v~l~v~R~~~   93 (106)
T 4amh_A           33 SIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEEVTHEEAVTALKNTSDFVYLKVAKPGS   93 (106)
T ss_dssp             CEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHSCCSEEEEEEECCSS
T ss_pred             CEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEEEEEeCCC
Confidence            8999999999999999944999999999999999999999999999877789999998764

>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A

Probab=99.19  E-value=8.1e-11  Score=92.22  Aligned_cols=64  Identities=23%  Similarity=0.403  Sum_probs=58.5

Q ss_pred             cEEEEEEcCCCHHhhh-CCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCCccccc
Q psy16075          3 GIFISRLVPGGLAEST-GLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQRANM   67 (241)
Q Consensus         3 GIfIs~VvpGSpAerA-GLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~q~~~~   67 (241)
                      |++|..|.+++||+++ || ++||+|++|||+++.++++.+++.+++..++.|.|+|.+.++..++
T Consensus        54 ~~~V~~V~~~spA~~aggL-~~GD~Il~VnG~~v~~~~~~~~~~~l~~~~~~v~l~v~r~g~~~~~  118 (120)
T 2iwo_A           54 PIFIAMMHPTGVAAQTQKL-RVGDRIVTICGTSTEGMTHTQAVNLLKNASGSIEMQVVAGGDVSET  118 (120)
T ss_dssp             EEEEEEECTTSHHHHHTCC-CTTCEEEEETTEECTTCBHHHHHHHHHHCCSEEEEEEECCTTSSSC
T ss_pred             CEEEEEECCCCHHHHhCCC-CCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCcccee
Confidence            6899999999999999 65 9999999999999999999999999998888899999988776554

>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1

Probab=99.19  E-value=6.6e-11  Score=87.63  Aligned_cols=60  Identities=27%  Similarity=0.530  Sum_probs=54.5

Q ss_pred             cEEEEEEcCCCHHhh-hCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCCc
Q psy16075          3 GIFISRLVPGGLAES-TGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQ   63 (241)
Q Consensus         3 GIfIs~VvpGSpAer-AGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~q   63 (241)
                      +++|.+|.+++||++ +|+ ++||+|++|||+++.++++++++++|+...+.+.|+|.+.++
T Consensus        26 ~~~I~~V~~gspA~~~agL-~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~   86 (88)
T 1kwa_A           26 HCIVARIMHGGMIHRQGTL-HVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYR   86 (88)
T ss_dssp             GEEEEEECTTSHHHHHTCC-CTTCEEEEETTEEGGGSCHHHHHHHHHHCCEEEEEEEECCCC
T ss_pred             CEEEEEECCCCHHHHcCCC-CCCCEEEEECCEECCCCCHHHHHHHHhcCCCcEEEEEECCcC
Confidence            689999999999999 565 999999999999999999999999999887788888887654

>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens}

Probab=99.18  E-value=1.1e-10  Score=86.56  Aligned_cols=64  Identities=22%  Similarity=0.339  Sum_probs=57.8

Q ss_pred             cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCCccccc
Q psy16075          3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQRANM   67 (241)
Q Consensus         3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~q~~~~   67 (241)
                      |++|..|.+++||+++|+ ++||+|++|||+++.+++++++.++++..+..+.|+|.+.++...+
T Consensus        31 g~~V~~V~~~spA~~aGl-~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~r~~~~~~~   94 (96)
T 2v90_A           31 GQFLWEVDPGLPAKKAGM-QAGDRLVAVAGESVEGLGHEETVSRIQGQGSCVSLTVVDPEADRET   94 (96)
T ss_dssp             EEEEEEECTTSHHHHTTC-CTTEEEEEETTEECTTCCHHHHHHHHHTTTTEEEEEEECCCTTSCC
T ss_pred             CeEEEEECCCChHHHcCC-CCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEECCCCcccc
Confidence            799999999999999996 9999999999999998889999999987756799999988766544

>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A

Probab=99.17  E-value=1.2e-10  Score=87.34  Aligned_cols=65  Identities=31%  Similarity=0.520  Sum_probs=57.8

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCCcccc
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQRAN   66 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~q~~~   66 (241)
                      .|++|..|.+++||+++|.|++||+|++|||+++.++++.+++.+++..+..+.|+|.+.++..+
T Consensus        34 ~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~~~~~   98 (102)
T 2i1n_A           34 PGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVDVSEVVHSRAVEALKEAGPVVRLVVRRRQPPPE   98 (102)
T ss_dssp             CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHHSCSEEEEEEEEECCCCS
T ss_pred             CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCCCCC
Confidence            48999999999999999944999999999999999999999999998877789999988765443

>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.16  E-value=1.1e-10  Score=90.39  Aligned_cols=62  Identities=34%  Similarity=0.534  Sum_probs=56.2

Q ss_pred             cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCCcc
Q psy16075          3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQR   64 (241)
Q Consensus         3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~q~   64 (241)
                      |++|..|.+++||+++|.|++||+|++|||+++.++++++++.+|+.....+.|+|.+..+.
T Consensus        50 g~~V~~v~~~s~A~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~~~~~v~l~v~R~~~~  111 (117)
T 1ujd_A           50 GAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQSIISQQSGEAEICVRLDLNM  111 (117)
T ss_dssp             EEEEEEECTTCHHHHHSSCCTTCEEEEETTEECTTCCHHHHHHHHSCCSSCEEEEEESSCCC
T ss_pred             CEEEEEECCCCHHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCEEEEEEEECCcc
Confidence            79999999999999999449999999999999999999999999988777899999886543

>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens}

Probab=99.16  E-value=9.1e-11  Score=91.19  Aligned_cols=59  Identities=20%  Similarity=0.300  Sum_probs=52.7

Q ss_pred             cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCC--cEEEEEecC
Q psy16075          3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSS--NLIITVKPA   61 (241)
Q Consensus         3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg--~VtLtV~p~   61 (241)
                      .+||.+|.+|++|++.|.|++||+|++|||+++.+++|++++++|++...  .++|++.+.
T Consensus        29 ~~~I~rI~~gg~a~r~g~L~vGD~I~~VNG~~v~g~~h~evv~lLk~~~~g~~~~L~lv~p   89 (95)
T 3gge_A           29 YAFIKRIKDGGVIDSVKTICVGDHIESINGENIVGWRHYDVAKKLKELKKEELFTMKLIEP   89 (95)
T ss_dssp             CCEEEEECTTSHHHHCTTCCTTCEEEEETTEECTTCCHHHHHHHHHHSCTTCEEEEEEEEE
T ss_pred             cEEEEEEcCCChHHhcCCCCCCCEEEEECCEEccCCCHHHHHHHHHhCCCCCEEEEEEECc
Confidence            47999999999999999999999999999999999999999999998765  466666543

>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.15  E-value=1.3e-10  Score=90.10  Aligned_cols=62  Identities=24%  Similarity=0.410  Sum_probs=55.8

Q ss_pred             cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCCcc
Q psy16075          3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQR   64 (241)
Q Consensus         3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~q~   64 (241)
                      +++|..|.+++||+++|.|++||+|++|||+++.++++++++.+|+..+..+.|+|.+.++.
T Consensus        43 ~~~V~~V~~~spA~~aG~l~~GD~Il~Ing~~v~~~~~~~~~~~l~~~g~~v~l~v~r~~~~  104 (117)
T 1v62_A           43 VITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLLASISEKVRLEILPVPQS  104 (117)
T ss_dssp             EEEEEECCTTSHHHHHTCCCTTCBEEEETTEETTSCCHHHHHHHHHSCSSEEEEEECCBTTB
T ss_pred             CEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEECCCC
Confidence            49999999999999999559999999999999998999999999996666799999887653

>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1

Probab=99.15  E-value=1.7e-10  Score=89.97  Aligned_cols=62  Identities=18%  Similarity=0.395  Sum_probs=56.8

Q ss_pred             cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCCcc
Q psy16075          3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQR   64 (241)
Q Consensus         3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~q~   64 (241)
                      |++|..|.++|||+++|.|++||+|++|||+++.++++.+++.+++...+.|.|+|.+.++.
T Consensus        54 gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~v~l~v~R~g~~  115 (117)
T 2fne_A           54 PIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSSDET  115 (117)
T ss_dssp             EEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSSEEEEEEECSCE
T ss_pred             CEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCcc
Confidence            68999999999999999449999999999999999999999999998877899999887653

>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens}

Probab=99.15  E-value=1.8e-10  Score=84.28  Aligned_cols=66  Identities=21%  Similarity=0.379  Sum_probs=53.5

Q ss_pred             cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCCcccccc
Q psy16075          3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQRANMS   68 (241)
Q Consensus         3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~q~~~~~   68 (241)
                      |++|..|.+++||+++|.|+.||+|++|||+++.+++++++..+++...+.+.|+|.+.++...+.
T Consensus        24 gv~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~r~g~~~~~~   89 (92)
T 3cyy_A           24 HIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSKGKLKMVVQRDERATLLN   89 (92)
T ss_dssp             EEEEEEECTTCHHHHSCCCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTEEEEEEEC--------
T ss_pred             CEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCcEEEEEEeCCceeeee
Confidence            789999999999999993399999999999999999999999999877678889998887665543

>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens}

Probab=99.14  E-value=1.2e-10  Score=89.37  Aligned_cols=66  Identities=18%  Similarity=0.350  Sum_probs=59.4

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcC-CCCHHHHHHHHHhCCCcEEEEEecCCccccc
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVA-GKSLDQVTDMMVANSSNLIITVKPANQRANM   67 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~-glshdeVv~LLKsssg~VtLtV~p~~q~~~~   67 (241)
                      .|++|..|.+++||+++|.|++||+|++|||+++. ++++.+++.+++..+..+.|+|.+.++...+
T Consensus        49 ~gv~V~~V~~~spA~~aG~l~~GD~Il~ing~~v~~~~~~~~~~~~l~~~~~~v~l~v~R~~~~~~~  115 (117)
T 2o2t_A           49 LGIFVQEIQEGSVAHRDGRLKETDQILAINGQALDQTITHQQAISILQKAKDTVQLVIARGSLPQYY  115 (117)
T ss_dssp             EEEEECCCCTTSHHHHHCCCCTTCEEEEETTEECCTTSCHHHHHHHHHHCCSEEEEEEESSCCGGGG
T ss_pred             CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCCHHHHHHHHHcCCCEEEEEEEeCCcceee
Confidence            37999999999999999944999999999999998 9999999999998777899999998776654

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A

Probab=99.14  E-value=1e-10  Score=108.88  Aligned_cols=118  Identities=16%  Similarity=0.219  Sum_probs=88.4

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHh--CCCcEEEEEecCCcccccccccCCCCCCCC
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVA--NSSNLIITVKPANQRANMSVPRRGSYSRTS   79 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKs--ssg~VtLtV~p~~q~~~~~~~R~~~~~~~s   79 (241)
                      .|++|..|.+||||+++|| ++||+|++|||+++.++++++++.+|+.  .+..+.|+|.+.++...-.++       . 
T Consensus        31 ~gi~V~~V~~gspA~~aGL-~~GD~Il~VnG~~v~~~~~~e~~~~l~~~~~g~~v~l~v~r~~~~~~~~~~-------~-  101 (391)
T 3tsz_A           31 VGIFVAGVLEDSPAAKEGL-EEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKKDVYRRIVE-------S-  101 (391)
T ss_dssp             TEEEEEEECTTCHHHHTTC-CTTEEEEEETTEECTTCCHHHHHHHHHHSCTTSEEEEEEEECHHHHGGGTS-------S-
T ss_pred             CCEEEEEECCCCHHHHcCC-CCCCEEEEECCEECCCCCHHHHHHHHHhhcCCCeEEEEEeeCCcccccccc-------c-
Confidence            4799999999999999996 9999999999999999999999999986  344799999987654432110       0 


Q ss_pred             CCCCCCCCCCcCcccCCCCCCcchhhhhhcccccceeecccCCCCcccceeeeEEEEEeec--ccccchhcccccc
Q psy16075         80 QLSSDSHQSTQSIATTNNSEDDEQDEVVDLTGITLEICRIEPSTNSDIFERTKIVFVFTML--SKTTKWMSDMNGH  153 (241)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~t~s~~~~~~~i~~~~~~~--~~~~~~~~~~~~~  153 (241)
                                 .        ..+.-.|+++..+....      ..+..|.+++|+++.+..  +...||++.-.+.
T Consensus       102 -----------~--------~~~~~~vral~dy~~~~------~~~Lsf~~Gdil~V~~~~~~~d~~wW~a~~~~~  152 (391)
T 3tsz_A          102 -----------D--------VGDSFYIRTHFEYEKES------PYGLSFNKGEVFRVVDTLYNGKLGSWLAIRIGK  152 (391)
T ss_dssp             -----------C--------CSCCEEEEECSCBCCSS------TTBCCBCTTCEEEEEESSGGGSSSEEEEEEECG
T ss_pred             -----------c--------cccccccccccccCCCC------CCcceEccCCEEEEEeccCCCCCCeEEEEEeCC
Confidence                       0        01223455555543311      257899999999999985  4578999876543

>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A*

Probab=99.14  E-value=2e-10  Score=84.45  Aligned_cols=62  Identities=21%  Similarity=0.340  Sum_probs=56.1

Q ss_pred             cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCCccc
Q psy16075          3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQRA   65 (241)
Q Consensus         3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~q~~   65 (241)
                      |++|..|.+++||+++|+ ++||+|++|||+++....+.++..+++..+..+.|+|.+.++..
T Consensus        28 g~~V~~V~~~spA~~aGl-~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~R~g~~~   89 (91)
T 2pkt_A           28 PLAISRVTPGSKAALANL-CIGDVITAIDGENTSNMTHLEAQNRIKGCTDNLTLTVARSEHES   89 (91)
T ss_dssp             EEEEEEECTTSHHHHTTC-CTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEEEEEECCCC
T ss_pred             CeEEEEECCCCHHHHcCC-CCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCccc
Confidence            789999999999999997 99999999999999999999999999875567999999877654

>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A

Probab=99.14  E-value=2.3e-10  Score=83.98  Aligned_cols=61  Identities=30%  Similarity=0.450  Sum_probs=55.2

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCCc
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQ   63 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~q   63 (241)
                      .|++|..|.+++||+++|+ ++||+|++|||+++.+.+++++.++++..+..+.|+|.+.+.
T Consensus        28 ~gv~V~~V~~~spA~~aGl-~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~   88 (90)
T 2he4_A           28 PGQYIRSVDPGSPAARSGL-RAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPST   88 (90)
T ss_dssp             SSEEEEEECTTSHHHHHTC-CTTCEEEEETTEECTTSCHHHHHHHHTTSSSEEEEEEECCCC
T ss_pred             CCEEEEEECCCChHHHCCC-CCCCEEEEECCEECCCCCHHHHHHHHHcCCCcEEEEEEccCC
Confidence            4799999999999999996 999999999999999999999999998776679999987653

>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens}

Probab=99.13  E-value=1.4e-10  Score=91.15  Aligned_cols=60  Identities=20%  Similarity=0.411  Sum_probs=55.1

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecC
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA   61 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~   61 (241)
                      .|++|..|.++|||+++|.|++||+|++|||+++.++++++++.+|+..+..|.|+|.+.
T Consensus        53 ~gv~V~~V~~gspA~~aG~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~L~v~R~  112 (118)
T 3b76_A           53 LPIYVISVEPGGVISRDGRIKTGDILLNVDGVELTEVSRSEAVALLKRTSSSIVLKALEV  112 (118)
T ss_dssp             CCEEEEEECTTSHHHHHCSSCTTCEEEEETTEEGGGSCHHHHHHHHHSCCSEEEEEEEEE
T ss_pred             CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEEC
Confidence            379999999999999999449999999999999999999999999998877899988864

>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.13  E-value=1.5e-10  Score=89.20  Aligned_cols=62  Identities=19%  Similarity=0.384  Sum_probs=55.2

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCC---C-cEEEEEecCCc
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANS---S-NLIITVKPANQ   63 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsss---g-~VtLtV~p~~q   63 (241)
                      ++++|..|.+++||+++|.|++||+|++|||+++.+++|++++++|+...   + .+.|.+.+.++
T Consensus        41 ~~~~V~~v~~~s~A~~aG~l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~r~~~~~~l~v~R~~~  106 (109)
T 1wi4_A           41 PLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSIITRAKLRSESPWEIAFIRSGP  106 (109)
T ss_dssp             SSEEEEEECTTSHHHHHCSCCTTCBEEEETTSCCTTCCHHHHHHHHHHSCCSSSSCEEEEEECCCC
T ss_pred             CCEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHccccCCCceEEEEEEeCCC
Confidence            36999999999999999955999999999999999999999999999877   3 57888887654

>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A

Probab=99.13  E-value=2.4e-10  Score=86.39  Aligned_cols=65  Identities=18%  Similarity=0.371  Sum_probs=56.1

Q ss_pred             cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCCccccc
Q psy16075          3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQRANM   67 (241)
Q Consensus         3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~q~~~~   67 (241)
                      |++|..|.++|||+++|.|++||+|++|||+++.++++.+++.+++..+..+.|+|.+.++...+
T Consensus        34 gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~R~~~~~~~   98 (105)
T 2awx_A           34 SIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEEVTHEEAVTALKNTSDFVYLKVAKPTSMYIS   98 (105)
T ss_dssp             CEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHSCCSEEEEEEECCCC----
T ss_pred             CEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEcCCCCCCc
Confidence            89999999999999999449999999999999999999999999987766899999987765544

>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.13  E-value=2.2e-10  Score=85.32  Aligned_cols=60  Identities=28%  Similarity=0.514  Sum_probs=54.1

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCC
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPAN   62 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~   62 (241)
                      .+++|..|.+++||+++|.|++||+|++|||+++ +.+++++.++|+...+.+.|+|.+..
T Consensus        29 ~~v~V~~V~~~spA~~ag~L~~GD~I~~ing~~v-~~~~~~~~~~l~~~~~~v~l~v~~~~   88 (91)
T 2e7k_A           29 GELVIARILHGGMVAQQGLLHVGDIIKEVNGQPV-GSDPRALQELLRNASGSVILKILSGP   88 (91)
T ss_dssp             SSEEEEEECSSSHHHHHCCCCTTCEEEEETTEEC-TTCHHHHHHHHHTCCSSBCEEEECCS
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEEC-CCCHHHHHHHHHcCCCeEEEEEEECC
Confidence            4789999999999999985599999999999999 78999999999987778999998754

>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens}

Probab=99.13  E-value=2.4e-10  Score=84.58  Aligned_cols=62  Identities=31%  Similarity=0.524  Sum_probs=56.0

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCCc
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQ   63 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~q   63 (241)
                      +|++|..|.++|||+++|.|++||+|++|||+++.++++.++..+++..+..+.|+|.+.++
T Consensus        29 ~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~~   90 (95)
T 2vwr_A           29 PGVFILDLLEGGLAAQDGRLSSNDRVLAINGHDLKYGTPELAAQIIQASGERVNLTIARPGK   90 (95)
T ss_dssp             CSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSEEEEEEEEESC
T ss_pred             CCEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEcCCc
Confidence            48999999999999999944999999999999999999999999998777789999987654

>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A

Probab=99.13  E-value=3e-10  Score=82.83  Aligned_cols=59  Identities=17%  Similarity=0.278  Sum_probs=54.6

Q ss_pred             cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCC
Q psy16075          3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPAN   62 (241)
Q Consensus         3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~   62 (241)
                      |++|..|.+++||+++|+ ++||+|++|||+++.+++++++.++++.....+.|+|.+.+
T Consensus        27 g~~V~~V~~~spA~~aGL-~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~R~~   85 (87)
T 2pa1_A           27 PIMVTKVAERGKAKDADL-RPGDIIVAINGESAEGMLHAEAQSKIRQSPSPLRLQLDRIT   85 (87)
T ss_dssp             EEEEEEECSSSHHHHTTC-CTTCEEEEETTEESTTCCHHHHHHHHHTCCSSEEEEEEECC
T ss_pred             CEEEEEECCCChHHHcCC-CCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEecC
Confidence            789999999999999997 99999999999999988899999999877778999998765

>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens}

Probab=99.13  E-value=2.2e-10  Score=84.90  Aligned_cols=63  Identities=19%  Similarity=0.383  Sum_probs=55.9

Q ss_pred             cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCCccc
Q psy16075          3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQRA   65 (241)
Q Consensus         3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~q~~   65 (241)
                      |++|..|.+++||+++|.|++||+|++|||+++.+++++++..+++..+..+.|+|.+.++..
T Consensus        33 ~~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~R~~~~~   95 (97)
T 2jil_A           33 PVVITSVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQEAALLIEYDVSET   95 (97)
T ss_dssp             EEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHHSCSEEEEEEEEECCCC
T ss_pred             CEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCCcC
Confidence            789999999999999993399999999999999988899999999985567899998866543

>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1

Probab=99.12  E-value=1.9e-10  Score=89.53  Aligned_cols=60  Identities=22%  Similarity=0.432  Sum_probs=55.0

Q ss_pred             cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCC
Q psy16075          3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPAN   62 (241)
Q Consensus         3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~   62 (241)
                      |++|..|.++|||+++|.|++||+|++|||+++.++++++++.+++..+..|.|+|.+.+
T Consensus        55 gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~g~~v~l~v~R~~  114 (117)
T 2byg_A           55 SIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKNTSEVVYLKVGKPT  114 (117)
T ss_dssp             CEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEEEEEEEE
T ss_pred             CEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCC
Confidence            799999999999999994499999999999999999999999999977667999998754

>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus}

Probab=99.12  E-value=2.9e-10  Score=86.84  Aligned_cols=67  Identities=21%  Similarity=0.378  Sum_probs=59.6

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCCcccccc
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQRANMS   68 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~q~~~~~   68 (241)
                      .|++|..|.++|||+++|.|++||+|++|||+++.++++.+++.+++..+..+.|+|.+.++..++.
T Consensus        35 ~g~~V~~V~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~~~~~~~  101 (113)
T 2g5m_B           35 LGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNTKGRVRFMIGRERPGEQSE  101 (113)
T ss_dssp             EEEEEEECCTTSHHHHHTCSCTTCBEEEETTEECSSCCHHHHHHHHHHSCSSCEEEEEECCCCTTSS
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCeEEEEEEeCCCCCcch
Confidence            3799999999999999994499999999999999999999999999988778999999887655543

>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.12  E-value=1.8e-10  Score=89.15  Aligned_cols=66  Identities=26%  Similarity=0.337  Sum_probs=57.9

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCCccccc
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQRANM   67 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~q~~~~   67 (241)
                      .|++|..|.+++||+++|.|++||+|++|||++|.++++.+++.+++.....|.|+|.+..+..+.
T Consensus        47 ~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~~~~~~  112 (120)
T 2eno_A           47 SGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRVQHRLQVQNG  112 (120)
T ss_dssp             CSEEEEEECSSSHHHHSCCSCTTCEEEEETTEECCSCCHHHHHHHHHHHCSEEEEEEEEEEECCCS
T ss_pred             CCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCcCCCC
Confidence            379999999999999999449999999999999999999999999987766799999887655443

>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A

Probab=99.12  E-value=5e-10  Score=88.23  Aligned_cols=60  Identities=22%  Similarity=0.257  Sum_probs=54.0

Q ss_pred             cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCC--CcEEEEEecCC
Q psy16075          3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANS--SNLIITVKPAN   62 (241)
Q Consensus         3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsss--g~VtLtV~p~~   62 (241)
                      |++|..|.+++||+++|.|++||+|++|||+++.++++++++++|+...  ..|.|+|.+..
T Consensus        44 ~v~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~  105 (129)
T 2kpk_A           44 FLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVDLELCRGY  105 (129)
T ss_dssp             EEEEEEECTTSHHHHHSSCCTTCEEEEETTEECTTSCHHHHHHHHHHSCTTEEEEEEEEECS
T ss_pred             CEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEeCC
Confidence            5899999999999999944999999999999999999999999998874  36889998764

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}

Probab=99.12  E-value=8.4e-11  Score=112.68  Aligned_cols=116  Identities=16%  Similarity=0.211  Sum_probs=86.8

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHh--CCCcEEEEEecCCcccccccccCCCCCCCC
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVA--NSSNLIITVKPANQRANMSVPRRGSYSRTS   79 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKs--ssg~VtLtV~p~~q~~~~~~~R~~~~~~~s   79 (241)
                      .|++|.+|.+||||+++|| ++||+|++|||++|.++++++++.+|+.  .+..|.|+|.+.++...-.++        +
T Consensus        23 ~Gi~V~~V~~gspA~~aGL-~~GD~Il~VNG~~v~~~t~~e~~~~L~~~~~g~~v~L~V~r~g~~~~~~~~--------~   93 (468)
T 3shw_A           23 VGIFVAGVLEDSPAAKEGL-EEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKKDVYRRIVE--------S   93 (468)
T ss_dssp             TEEEEEEECSSSHHHHTTC-CTTEEEEEETTEECTTCCHHHHHHHHHHSCTTSEEEEEEEECHHHHHHHHH--------H
T ss_pred             CCEEEEEECCCCHHHHcCC-CCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEEEEECCccchhhhc--------c
Confidence            4899999999999999996 9999999999999999999999999988  455799999987654332111        0


Q ss_pred             CCCCCCCCCCcCcccCCCCCCcchhhhhhcccccceeecccCCCCcccceeeeEEEEEeec--ccccchhcccc
Q psy16075         80 QLSSDSHQSTQSIATTNNSEDDEQDEVVDLTGITLEICRIEPSTNSDIFERTKIVFVFTML--SKTTKWMSDMN  151 (241)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~t~s~~~~~~~i~~~~~~~--~~~~~~~~~~~  151 (241)
                      +    +               .+.-.|+++..+....      .....|.+++|+++..++  +...||++.-.
T Consensus        94 ~----~---------------g~s~yVralfdy~~~~------~~~LsF~~GDIL~V~d~~~~~d~~wW~A~~~  142 (468)
T 3shw_A           94 D----V---------------GDSFYIRTHFEYEKES------PYGLSFNKGEVFRVVDTLYNGKLGSWLAIRI  142 (468)
T ss_dssp             T----C---------------CCCEEEEECSCBCCSS------TTBCCBCTTCEEEEEESSGGGCTTEEEEEEE
T ss_pred             c----c---------------ccccccccccCcCCCC------CCCceEccCCEEEEeecccCCCCCeEEEEEc
Confidence            0    0               0112344444433211      367889999999999986  34689998764

>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens}

Probab=99.11  E-value=3.4e-10  Score=83.16  Aligned_cols=61  Identities=28%  Similarity=0.510  Sum_probs=55.4

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCC
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPAN   62 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~   62 (241)
                      .|++|..|.++|||+++|.|++||+|++|||+++.+++++++..+++..+..+.|+|.+.+
T Consensus        29 ~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~R~~   89 (92)
T 2qg1_A           29 TGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNATQEAVAALLKCSLGTVTLEVGRIS   89 (92)
T ss_dssp             CSCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSEEEEEEECCC
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEccc
Confidence            4799999999999999994499999999999999999999999999887778999998764

>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A

Probab=99.11  E-value=1e-10  Score=86.23  Aligned_cols=62  Identities=31%  Similarity=0.528  Sum_probs=52.7

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCCcc
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQR   64 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~q~   64 (241)
                      .|++|..|.+++||+++|+ ++||+|++|||+++.+++++++.++|+..+..+.|+|.+.++.
T Consensus        27 ~g~~V~~V~~~spA~~aGl-~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~r~~~~   88 (91)
T 2vsp_A           27 PGSFIKEVQKGGPADLAGL-EDEDVIIEVNGVNVLDEPYEKVVDRIQSSGKNVTLLVCGKKAQ   88 (91)
T ss_dssp             SCCBC-CCCTTSHHHHTTC-CTTCEEEEETTEECTTSCHHHHHHHHTTSCSEEEEEEEC----
T ss_pred             CCeEEEEECCCChHHHcCC-CCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEeCCcc
Confidence            4789999999999999996 9999999999999999999999999987755799999887654

>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1

Probab=99.11  E-value=3.8e-10  Score=84.45  Aligned_cols=62  Identities=23%  Similarity=0.393  Sum_probs=54.4

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCCc
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQ   63 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~q   63 (241)
                      .|++|..|.++|||+++|.|++||+|++|||+++.+++++++..+|+...+.+.|+|.+..+
T Consensus        39 ~g~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~  100 (103)
T 2fcf_A           39 RGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSIIS  100 (103)
T ss_dssp             --EEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSSEEEEEECCCC
T ss_pred             CCEEEEEeCCCCcHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcEEEEEEECCC
Confidence            37999999999999999933999999999999999888999999999877789999987643

>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens}

Probab=99.11  E-value=4e-10  Score=83.64  Aligned_cols=64  Identities=23%  Similarity=0.316  Sum_probs=57.1

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCCccc
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQRA   65 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~q~~   65 (241)
                      .|++|..|.+++||+++|.|++||+|++|||+++.++++.++..+++.....+.|+|.+.++..
T Consensus        30 ~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~R~~~~~   93 (98)
T 2opg_A           30 GAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHDEAINVLRQTPQRVRLTLYRDEAPY   93 (98)
T ss_dssp             CSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEEEEEECSSCC
T ss_pred             CCEEEEEECCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEcCCCCC
Confidence            4899999999999999994499999999999999999999999999877778899998876544

>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.11  E-value=2.1e-10  Score=87.20  Aligned_cols=68  Identities=26%  Similarity=0.510  Sum_probs=60.5

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCCccccccc
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQRANMSV   69 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~q~~~~~~   69 (241)
                      .|++|..|.+++||+++|.|++||+|++|||+++.++++.+++.+++.....+.|+|.+.++...+.+
T Consensus        36 ~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~R~~~~~~~~v  103 (110)
T 1um1_A           36 PGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDLIRHGGKKMRFLVAKSDVETAKKI  103 (110)
T ss_dssp             SSEEEEEECTTSHHHHHSCCCTTCEEEEESSCBCSSCCHHHHHHHHHTCCSEEEEEEECCCHHHHHHH
T ss_pred             CCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCcceeEEE
Confidence            47999999999999999944999999999999999999999999998876689999999887666544

>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A

Probab=99.11  E-value=3.8e-10  Score=84.03  Aligned_cols=63  Identities=29%  Similarity=0.511  Sum_probs=55.6

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCCcc
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQR   64 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~q~   64 (241)
                      .|++|..|.+++||+++|.|++||+|++|||+++.+++++++..+++..+..+.|+|.+.++.
T Consensus        30 ~~~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~g~~v~l~v~R~~~~   92 (97)
T 1n7e_A           30 DPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQTDA   92 (97)
T ss_dssp             SCCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEEEEECCCCC
T ss_pred             CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCCC
Confidence            478999999999999999349999999999999998899999999985556789999876654

>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A

Probab=99.11  E-value=4.7e-10  Score=82.23  Aligned_cols=59  Identities=31%  Similarity=0.400  Sum_probs=52.5

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecC
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA   61 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~   61 (241)
                      .|++|..|.+++||+++|+ ++||+|++|||+++.++++.++..+++...+.+.+.+.+.
T Consensus        27 ~g~~V~~V~~~spA~~aGL-~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~~~~~~r   85 (91)
T 1g9o_A           27 LGQYIRLVEPGSPAEKAGL-LAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDP   85 (91)
T ss_dssp             SSEEEEEECTTSHHHHTTC-CTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEEEECC
T ss_pred             CCEEEEEECCCCHHHHCCC-CCCCEEEEECCEECCCCCHHHHHHHHHcCCCcEEEEEEcC
Confidence            4899999999999999996 9999999999999999999999999998777776665543

>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A

Probab=99.10  E-value=4.3e-10  Score=82.73  Aligned_cols=60  Identities=22%  Similarity=0.421  Sum_probs=54.2

Q ss_pred             cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCC
Q psy16075          3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPAN   62 (241)
Q Consensus         3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~   62 (241)
                      |++|..|.+++||+++|.|++||+|++|||+++.++++.++..+++.....+.|+|.+.+
T Consensus        34 gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~R~g   93 (94)
T 2fe5_A           34 SIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKPG   93 (94)
T ss_dssp             CEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHTCCSEEEEEEECCC
T ss_pred             CEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEcCC
Confidence            799999999999999994499999999999999988999999999877778888887754

>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens}

Probab=99.10  E-value=2.6e-10  Score=83.46  Aligned_cols=60  Identities=30%  Similarity=0.378  Sum_probs=54.1

Q ss_pred             cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCCc
Q psy16075          3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQ   63 (241)
Q Consensus         3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~q   63 (241)
                      |++|..|.+++||+++|+ ++||+|++|||+++.++++.++..+++..+..+.|+|.+.++
T Consensus        28 ~v~V~~V~~~spA~~aGl-~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~~   87 (89)
T 2q3g_A           28 PLSISRLTPGGKAAQAGV-AVGDWVLSIDGENAGSLTHIEAQNKIRACGERLSLGLSRAIT   87 (89)
T ss_dssp             EEEEEEECTTSHHHHTTC-CTTCEEEEETTEEGGGCCHHHHHHHHHTCTTEEEEEEEEECC
T ss_pred             CEEEEEECCCCHHHHcCC-CCCCEEEEECCEECCCCCHHHHHHHHHhCCCEEEEEEEeCCC
Confidence            689999999999999996 999999999999999999999999998776678898877543

>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A

Probab=99.10  E-value=4.3e-10  Score=84.98  Aligned_cols=63  Identities=30%  Similarity=0.510  Sum_probs=56.5

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCCcc
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQR   64 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~q~   64 (241)
                      .|++|..|.+++||+++|.|++||+|++|||+++.++++.+++.+++..+..+.|+|.+.++.
T Consensus        38 ~gv~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~~~  100 (106)
T 3axa_A           38 LGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTRTSSVVTLEVAKQGAI  100 (106)
T ss_dssp             EEEEEEEEBTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEEEEECCCSS
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCcc
Confidence            379999999999999999449999999999999999999999999987766899999887653

>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A

Probab=99.10  E-value=4.2e-10  Score=83.23  Aligned_cols=61  Identities=26%  Similarity=0.500  Sum_probs=54.7

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCC
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPAN   62 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~   62 (241)
                      .|++|..|.+++||+++|.|++||+|++|||+++.++++.++..+++..+..+.|+|.+..
T Consensus        33 ~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~g~~v~l~v~R~~   93 (96)
T 1d5g_A           33 GGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKGQ   93 (96)
T ss_dssp             SCCEEEEECTTSHHHHTTCCCTTCEEEEETTEECTTCCHHHHHHHHHSCCSEEEEEEECCS
T ss_pred             CCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEcCC
Confidence            3899999999999999994499999999999999999999999999876667889987754

>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A

Probab=99.10  E-value=4.3e-10  Score=83.84  Aligned_cols=60  Identities=17%  Similarity=0.282  Sum_probs=55.3

Q ss_pred             cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCCc
Q psy16075          3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQ   63 (241)
Q Consensus         3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~q   63 (241)
                      |++|..|.+++||+++|+ +.||+|++|||+++.+++++++..+++..+..+.|+|.+.++
T Consensus        35 g~~V~~V~~~spA~~aGl-~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~r~~~   94 (99)
T 3khf_A           35 HHVVWSVEDGSPAQEAGL-RAGDLITHINGESVLGLVHMDVVELLLKSGNKISLRTTALEN   94 (99)
T ss_dssp             EEEEEEECTTSHHHHHTC-CTTCEEEEETTEECTTCCHHHHHHHHHHSCSEEEEEEECSCS
T ss_pred             CeEEEEECCCCHHHHcCC-CCCCEEEEECCEECCCCCHHHHHHHHhcCCCEEEEEEEECCC
Confidence            678999999999999996 999999999999999999999999999777789999998654

>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens}

Probab=99.10  E-value=2.2e-10  Score=89.65  Aligned_cols=60  Identities=23%  Similarity=0.385  Sum_probs=55.0

Q ss_pred             cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcC-CCCHHHHHHHHHhCCCcEEEEEecCC
Q psy16075          3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVA-GKSLDQVTDMMVANSSNLIITVKPAN   62 (241)
Q Consensus         3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~-glshdeVv~LLKsssg~VtLtV~p~~   62 (241)
                      |++|..|.+++||+++|.|++||+|++|||+++. ++++++++.+|+..+..|.|+|.+..
T Consensus        55 gv~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~~l~~~~~~v~l~v~r~~  115 (128)
T 2db5_A           55 DIFVKDVQPGSVADRDQRLKENDQILAINHTPLDQNISHQQAIALLQQTTGSLRLIVAREP  115 (128)
T ss_dssp             EEEEECCCTTSHHHHTCCCCSSCBEEEESSCBCSTTSCHHHHHHHHHHCCSEEEEEEEECC
T ss_pred             CEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCCHHHHHHHHHcCCCeEEEEEEcCC
Confidence            7999999999999999945999999999999997 99999999999987778999998763

>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A

Probab=99.10  E-value=2.8e-10  Score=82.24  Aligned_cols=59  Identities=24%  Similarity=0.366  Sum_probs=53.7

Q ss_pred             cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCC
Q psy16075          3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPAN   62 (241)
Q Consensus         3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~   62 (241)
                      |++|..|.+++||+++|+ ++||+|++|||+++.+.++.++..+++.....+.|+|.+.+
T Consensus        26 ~v~V~~V~~~spA~~aGl-~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~R~~   84 (85)
T 1rgw_A           26 PLTISRITPGSKAAQSQL-SQGDLVVAIDGVNTDTMTHLEAQNKIKSASYNLSLTLQKSK   84 (85)
T ss_dssp             CCBEEEECTTSHHHHSSC-CCCSBEEEETTEECTTCCHHHHHHHHTTCSSCEEEEEESCC
T ss_pred             CeEEEEECCCCHHHHcCC-CCCCEEEEECCEECCCcCHHHHHHHHHcCCCeEEEEEEeCC
Confidence            689999999999999997 99999999999999999999999999877677889988754

>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A

Probab=99.09  E-value=4.5e-10  Score=83.62  Aligned_cols=58  Identities=24%  Similarity=0.362  Sum_probs=53.6

Q ss_pred             cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecC
Q psy16075          3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA   61 (241)
Q Consensus         3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~   61 (241)
                      |++|..|.+++||+++|| ++||+|++|||+++..++++++..+|+...+.+.|+|.+.
T Consensus        38 ~~~V~~V~~~spA~~aGL-~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~   95 (96)
T 2ego_A           38 VTFVARVHESSPAQLAGL-TPGDTIASVNGLNVEGIRHREIVDIIKASGNVLRLETLYG   95 (96)
T ss_dssp             EEEEEEECTTCHHHHTTC-CTTCEEEEETTEECTTCCHHHHHHHHHHTTTEEEEEEECC
T ss_pred             CeEEEEECCCChHHHcCC-CCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEEC
Confidence            689999999999999996 9999999999999998889999999998877888888764

>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A

Probab=99.09  E-value=1.2e-10  Score=91.85  Aligned_cols=62  Identities=27%  Similarity=0.461  Sum_probs=55.8

Q ss_pred             cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhC-------CCcEEEEEecCCcc
Q psy16075          3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVAN-------SSNLIITVKPANQR   64 (241)
Q Consensus         3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKss-------sg~VtLtV~p~~q~   64 (241)
                      |++|..|.+++||+++|.|++||+|++|||+++.+++|++++++|+..       ...|.|+|.+....
T Consensus        56 gi~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~g~~~~~v~l~v~R~~~~  124 (127)
T 1wg6_A           56 GIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRSMSMEGNIRGMIQLVILRRSGP  124 (127)
T ss_dssp             EEEEEECCSSSSTHHHHTSCSCCBEEEETTEESTTSCHHHHHHHHHHHHHHHHHHTCEEEEEEEECSCS
T ss_pred             CEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhhccccCCCCEEEEEEEeCCCC
Confidence            799999999999999995599999999999999999999999999865       56799999886543

>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} SCOP: b.36.1.0 PDB: 3r69_A*

Probab=99.09  E-value=3.4e-10  Score=83.41  Aligned_cols=60  Identities=32%  Similarity=0.416  Sum_probs=53.6

Q ss_pred             cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCCc
Q psy16075          3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQ   63 (241)
Q Consensus         3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~q   63 (241)
                      |++|..|.+++||+++|| ++||+|++|||+++.+++++++..+|+...+.+.+++.+...
T Consensus        30 ~~~V~~v~~~spA~~aGl-~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~~~~~r~~~   89 (95)
T 3r68_A           30 GQIIKDIEPGSPAEAAGL-KNNDLVVAVNGKSVEALDHDGVVEMIRKGGDQTTLLVLDKEL   89 (95)
T ss_dssp             SEEEECCCTTSHHHHHTC-CTTEEEEEETTEECTTCCHHHHHHHHHTTTTEEEEEEEECC-
T ss_pred             CEEEEEECCCCHHHHCCC-CCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEECCcc
Confidence            799999999999999996 999999999999999999999999999877778877766543

>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.09  E-value=3.1e-10  Score=85.56  Aligned_cols=65  Identities=26%  Similarity=0.356  Sum_probs=58.0

Q ss_pred             cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCCcccccc
Q psy16075          3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQRANMS   68 (241)
Q Consensus         3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~q~~~~~   68 (241)
                      +++|..|.+++||+++|+ ++||+|++|||+++.++++.++..+++.....+.|+|.+.++..++.
T Consensus        30 ~v~V~~V~~~spA~~aGL-~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~v~R~g~~~~~~   94 (103)
T 1wf7_A           30 PLTISSLKDGGKASQAHV-RIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRASAAAKSE   94 (103)
T ss_dssp             EEEECCCCTTCHHHHTTC-CTTCBEEEETTEECSSCCHHHHHHHHHHCSSEEEEEECCCSCCCCCC
T ss_pred             CEEEEEECCCCHHHHcCC-CCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCCcCCCC
Confidence            488999999999999996 99999999999999988899999999877667999999887766554

>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1

Probab=99.09  E-value=4.6e-10  Score=83.33  Aligned_cols=60  Identities=28%  Similarity=0.460  Sum_probs=54.1

Q ss_pred             cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCC
Q psy16075          3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPAN   62 (241)
Q Consensus         3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~   62 (241)
                      |++|..|.+++||+++|.|++||+|++|||+++.++++.++..+++..+..+.|+|.+.+
T Consensus        38 g~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~R~g   97 (98)
T 1ihj_A           38 GIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQTFD   97 (98)
T ss_dssp             EEEEEEECTTSHHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHHHSCSEEEEEEEEC-
T ss_pred             CEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCeEEEEEEeCC
Confidence            799999999999999993399999999999999999999999999886668999998764

>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.09  E-value=2.7e-10  Score=86.89  Aligned_cols=60  Identities=25%  Similarity=0.343  Sum_probs=53.8

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCC-CcEEEEEecC
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANS-SNLIITVKPA   61 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsss-g~VtLtV~p~   61 (241)
                      .|++|..|.+++||+++|.|++||+|++|||+++.++++++++++|+... +.|.|+|.+.
T Consensus        44 ~g~~V~~v~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~v~l~v~R~  104 (108)
T 2d92_A           44 SVIVIRSLVADGVAERSGGLLPGDRLVSVNEYCLDNTSLAEAVEILKAVPPGLVHLGICSG  104 (108)
T ss_dssp             EEEEEEEECTTCHHHHHTCCCTTCEEEEESSCBCTTCCHHHHHHHHHHSCSEEEEEEEECC
T ss_pred             CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCeEEEEEEcC
Confidence            36999999999999999955999999999999999999999999999864 4788888764

>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B

Probab=99.08  E-value=5.7e-10  Score=84.87  Aligned_cols=68  Identities=24%  Similarity=0.395  Sum_probs=60.0

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCC-CcEEEEEecCCccccccc
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANS-SNLIITVKPANQRANMSV   69 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsss-g~VtLtV~p~~q~~~~~~   69 (241)
                      .|++|..|.+++||+++|+|++||+|++|||+++.+++++++.++++... ..+.|+|.+.++...+.+
T Consensus        26 ~~~~V~~v~~~spA~~aGll~~GD~I~~ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~g~~~~~~~   94 (112)
T 1qau_A           26 PPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRGPEGFTTHL   94 (112)
T ss_dssp             SCEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTSCHHHHHHHHHHSCSSSEEEEEEECCTTSEEEE
T ss_pred             CCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCcEEEEEEeCCcccceEe
Confidence            37999999999999999977999999999999999888999999998754 479999998887666554

>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens}

Probab=99.08  E-value=5.9e-10  Score=81.22  Aligned_cols=59  Identities=24%  Similarity=0.365  Sum_probs=53.5

Q ss_pred             cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCC
Q psy16075          3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPAN   62 (241)
Q Consensus         3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~   62 (241)
                      +++|..|.+++||+++|+ ++||+|++|||+++.+++++++..+++..+..+.|+|.+.+
T Consensus        28 ~~~V~~V~~~spA~~aGl-~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~v~R~g   86 (88)
T 2uzc_A           28 PLTISSLKDGGKAAQANV-RIGDVVLSIDGINAQGMTHLEAQNKIKGCTGSLNMTLQRES   86 (88)
T ss_dssp             EEEEEEECTTSHHHHTTC-CTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEEEEECCC
T ss_pred             CeEEEEECCCChHHHcCC-CCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEeCC
Confidence            689999999999999996 99999999999999998899999999877667889987754

>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1

Probab=99.07  E-value=5.6e-10  Score=82.38  Aligned_cols=60  Identities=23%  Similarity=0.232  Sum_probs=53.8

Q ss_pred             cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCCc
Q psy16075          3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQ   63 (241)
Q Consensus         3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~q   63 (241)
                      |++|..|.+++||+++|+ +.||+|++|||+++.++++.++..+++..+..+.|+|.+...
T Consensus        25 ~~~V~~V~~~spA~~aGl-~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v~l~v~R~~~   84 (91)
T 2f5y_A           25 PVRVQAVDSGGPAERAGL-QQLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILLVWRMVP   84 (91)
T ss_dssp             SCEEEEECTTSHHHHHTC-CTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEEEEECC-
T ss_pred             CEEEEEECCCCHHHHcCC-CCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCC
Confidence            689999999999999996 999999999999999999999999998766678898887654

>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A

Probab=99.07  E-value=3.9e-10  Score=94.19  Aligned_cols=59  Identities=24%  Similarity=0.437  Sum_probs=54.7

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEec
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKP   60 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p   60 (241)
                      .|++|..|.+++||+++|.|++||+|++|||++|.++++.+++.+|+..+..|.|+|.+
T Consensus       111 ~gi~V~~V~~gspA~~aG~L~~GD~Il~VNG~~v~~~~~~~~~~~l~~~g~~v~L~V~R  169 (170)
T 3egg_C          111 LGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNTKGRVRFMIGR  169 (170)
T ss_dssp             BEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTBCHHHHHHHHHHCCSEEEEEEEE
T ss_pred             CCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEe
Confidence            36999999999999999955999999999999999999999999999877789999876

>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.07  E-value=5.6e-10  Score=87.24  Aligned_cols=65  Identities=22%  Similarity=0.478  Sum_probs=57.5

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCCcccc
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQRAN   66 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~q~~~   66 (241)
                      .|++|..|.+++||+++|.|++||+|++|||+++.+++++++.++|+..+..+.|+|.+.++...
T Consensus        46 ~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v~l~v~R~~~~~~  110 (129)
T 2dmz_A           46 SGIYVKSVIPGSAAYHNGHIQVNDKIVAVDGVNIQGFANHDVVEVLRNAGQVVHLTLVRRKTSSS  110 (129)
T ss_dssp             CEEEEEEECTTSHHHHHTCCCSSCBEEEETTBCCTTCCHHHHHHHHHHCCSSEEEEEEEESSSSS
T ss_pred             CCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCcccc
Confidence            47999999999999999944999999999999999999999999999866689999988765443

>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.07  E-value=3.8e-10  Score=85.60  Aligned_cols=61  Identities=26%  Similarity=0.531  Sum_probs=55.4

Q ss_pred             cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCCc
Q psy16075          3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQ   63 (241)
Q Consensus         3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~q   63 (241)
                      |++|..|.+++||+++|.|++||+|++|||+++.++++.+++.+++.....+.|+|.+...
T Consensus        41 gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~R~~~  101 (107)
T 1wf8_A           41 GIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRNTKGNVRFVIGREKP  101 (107)
T ss_dssp             EEEEEEECTTCHHHHHCSSCTTCBEEEETTEECBSCCHHHHHHHHHHCCSEEEEEEEEECC
T ss_pred             CEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCeEEEEEEeCCC
Confidence            7999999999999999944999999999999999999999999999877789999987543

>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.07  E-value=3.2e-10  Score=84.16  Aligned_cols=62  Identities=16%  Similarity=0.260  Sum_probs=56.4

Q ss_pred             cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCCccc
Q psy16075          3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQRA   65 (241)
Q Consensus         3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~q~~   65 (241)
                      |++|..|.+++||+++|+ ++||+|++|||+++..++++++..+++.....+.|+|.+.++..
T Consensus        31 g~~V~~V~~~spA~~aGL-~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~R~g~~~   92 (94)
T 1vb7_A           31 PIIVTKVTERGKAEAADL-RPGDIIVAINGQSAENMLHAEAQSKIRQSASPLRLQLDRSSGPS   92 (94)
T ss_dssp             EEECCCBCTTSSHHHHTC-CTTCEEEEETTEECTTCCHHHHHHHHHTCCSSEEEEEECCCCCC
T ss_pred             CeEEEEECCCCHHHHCCC-CCCCEEEEECCEECCCCCHHHHHHHHHhCCCcEEEEEEECCcCC
Confidence            689999999999999997 99999999999999988899999999877778999999876543

>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.07  E-value=4.3e-10  Score=87.70  Aligned_cols=63  Identities=22%  Similarity=0.429  Sum_probs=57.3

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCCcc
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQR   64 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~q~   64 (241)
                      .|++|..|.+++||+++|.|++||+|++|||+++.++++.+++.+++.....+.|+|.+.++.
T Consensus        51 ~gv~V~~V~~~spA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~~~~~~~~v~l~v~R~~~~  113 (124)
T 2daz_A           51 MSIFVVGINPEGPAAADGRMRIGDELLEINNQILYGRSHQNASAIIKTAPSKVKLVFIRNEDA  113 (124)
T ss_dssp             CCEEEEEECTTSHHHHHTCCCTTCEECEESSCBCTTSCHHHHHHHHHHSCSEEEEEEEECTTH
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCCc
Confidence            489999999999999999449999999999999999999999999988877899999887654

>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens}

Probab=99.07  E-value=4.7e-10  Score=85.04  Aligned_cols=60  Identities=25%  Similarity=0.401  Sum_probs=54.7

Q ss_pred             cEEEEEEcCCCHHhhh-CCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCCc
Q psy16075          3 GIFISRLVPGGLAEST-GLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQ   63 (241)
Q Consensus         3 GIfIs~VvpGSpAerA-GLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~q   63 (241)
                      |++|..|.+++||+++ |+ ++||+|++|||+++.++++++++.+++...+.+.|+|.+...
T Consensus        36 ~~~V~~V~~~s~A~~a~gL-~~GD~Il~Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~~   96 (103)
T 2dc2_A           36 PILISEIHPGQPADRCGGL-HVGDAILAVNGVNLRDTKHKEAVTILSQQRGEIEFEVVYVAL   96 (103)
T ss_dssp             EEEEEEECTTSHHHHHTCC-CSSEEEEEETTEESTTSCHHHHHHHHHHCCSEEEEEEEECC-
T ss_pred             CEEEEEECCCCHHHHhCCC-CCCCEEEEECCEECCCCCHHHHHHHHHhCCCcEEEEEEecCC
Confidence            6899999999999996 76 999999999999999999999999999888889999987643

>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.07  E-value=3.3e-10  Score=86.99  Aligned_cols=63  Identities=19%  Similarity=0.346  Sum_probs=56.1

Q ss_pred             cEEEEEEcCCCHHhh-hCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCCcccc
Q psy16075          3 GIFISRLVPGGLAES-TGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQRAN   66 (241)
Q Consensus         3 GIfIs~VvpGSpAer-AGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~q~~~   66 (241)
                      +++|..|.+++||++ +|| ++||+|++|||+++.+++++++.++|+.....+.|+|.+.++...
T Consensus        44 ~~~V~~V~~~spA~~~agL-~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~r~~~~~~  107 (114)
T 1uew_A           44 PHKIGRIIDGSPADRCAKL-KVGDRILAVNGQSIINMPHADIVKLIKDAGLSVTLRIIPQEELNS  107 (114)
T ss_dssp             SCEEEEECTTCTTGGGSSC-CTTCBEEEETTBCTTTSCHHHHHHHHHHTTTEEEEEECCCSCCCC
T ss_pred             CeEEEEECCCChHHHhCCC-CCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCcCCC
Confidence            469999999999999 897 999999999999999888999999999866678999988766554

>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A

Probab=99.07  E-value=6.3e-10  Score=83.19  Aligned_cols=62  Identities=24%  Similarity=0.364  Sum_probs=54.9

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCCc
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQ   63 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~q   63 (241)
                      .|++|..|.+++||+++|.|++||+|++|||+++.++++.++..+++..+..+.|+|.+.++
T Consensus        37 ~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~~   98 (101)
T 2jik_A           37 SGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRVQHRLE   98 (101)
T ss_dssp             CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHTCCSEEEEEEEEESC
T ss_pred             CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEeCCC
Confidence            37999999999999999944999999999999999999999999998776678899876543

>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}

Probab=99.06  E-value=4.1e-10  Score=89.67  Aligned_cols=60  Identities=27%  Similarity=0.382  Sum_probs=55.6

Q ss_pred             cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCCc
Q psy16075          3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQ   63 (241)
Q Consensus         3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~q   63 (241)
                      |++|..|.+++||+++|| ++||+|++|||+++.++++++++.+++..+..+.|+|.+..+
T Consensus        66 gv~V~~V~~gspA~~aGL-~~GD~Il~Vng~~v~~~~~~~~~~~l~~~g~~v~l~v~~~~~  125 (132)
T 3l4f_D           66 LQYLESVDEGGVAWRAGL-RMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTR  125 (132)
T ss_dssp             SEEEEEECTTSGGGGGTC-CTTCEEEEESSSBCTTSCHHHHHHHHHHTTTEEEEEEECCCC
T ss_pred             CEEEEEECCCCHHHHcCC-CCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEECCC
Confidence            799999999999999995 999999999999999999999999999877789999987654

>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster}

Probab=99.06  E-value=3.5e-10  Score=87.01  Aligned_cols=60  Identities=18%  Similarity=0.265  Sum_probs=54.6

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecC
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA   61 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~   61 (241)
                      .|++|..|.++|||+++|.|++||+|++|||+++.+++++++..+++...+.+.|+|.+.
T Consensus        25 ~gv~V~~V~~gspA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~~~~~~~~v~l~v~R~   84 (106)
T 2la8_A           25 IGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGANGKVSMEVTRP   84 (106)
T ss_dssp             SSEEEEECCTTSCHHHHTTCCTTCEEEEESSCBCSSSCHHHHHHHHHSCBSCEEEEEEEC
T ss_pred             CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEEEEEeC
Confidence            479999999999999999449999999999999999999999999988777899988864

>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A

Probab=99.06  E-value=5e-10  Score=83.75  Aligned_cols=60  Identities=18%  Similarity=0.259  Sum_probs=54.2

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecC
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA   61 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~   61 (241)
                      .|++|..|.+++||+++|.|++||+|++|||+++.++++.++..+++...+.+.|+|.+.
T Consensus        31 ~gv~V~~V~~~spA~~aG~L~~GD~I~~Ing~~v~~~~~~~~~~~~~~~~~~v~l~v~R~   90 (96)
T 2qkv_A           31 IGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVSYALFKGANGKVSMEVTRP   90 (96)
T ss_dssp             SSEEEEEECTTSCHHHHHHCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEEEECC
T ss_pred             CcEEEEEeCCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCcEEEEEEeC
Confidence            478999999999999999339999999999999999999999999988777899988864

>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus}

Probab=99.06  E-value=7.5e-10  Score=80.20  Aligned_cols=58  Identities=22%  Similarity=0.271  Sum_probs=51.1

Q ss_pred             cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhC--CCcEEEEEec
Q psy16075          3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVAN--SSNLIITVKP   60 (241)
Q Consensus         3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKss--sg~VtLtV~p   60 (241)
                      |++|..|.+++||+++|.|++||+|++|||+++.+++++++.++++..  +..+.|+|.+
T Consensus        26 ~~~V~~v~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R   85 (85)
T 2i04_A           26 FLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVDLELCR   85 (85)
T ss_dssp             CEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTSCTTCEEEEEEEC
T ss_pred             CEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEC
Confidence            699999999999999994499999999999999999999999999876  3467787753

>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}

Probab=99.06  E-value=4.5e-10  Score=84.93  Aligned_cols=62  Identities=23%  Similarity=0.427  Sum_probs=55.4

Q ss_pred             cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCCcc
Q psy16075          3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQR   64 (241)
Q Consensus         3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~q~   64 (241)
                      |++|..|.+++||+++|.|++||+|++|||+++.+++++++..+++..+..+.|+|.+.++.
T Consensus        45 gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~g~~v~l~v~R~~~~  106 (108)
T 2jre_A           45 GIYVKSLIPGSAAALDGRIEPNDKILRVDDVNVQGMAQSDVVEVLRNAGNPVRLLLIRRLPL  106 (108)
T ss_dssp             CCEEEEECTTSHHHHHSSCCSSEEEEEETTEECTTSCHHHHHHHHHHHCSEEEEEEEECCCC
T ss_pred             CEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCcC
Confidence            89999999999999999449999999999999998889999999987566789999876643

>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A

Probab=99.06  E-value=8.2e-10  Score=78.35  Aligned_cols=59  Identities=24%  Similarity=0.406  Sum_probs=52.4

Q ss_pred             cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecC
Q psy16075          3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA   61 (241)
Q Consensus         3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~   61 (241)
                      |++|..|.+++||+++|.|++||+|++|||+++.+++++++..+++...+.+.++|.+.
T Consensus        22 gv~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~R~   80 (81)
T 2rcz_A           22 HIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSKGKLKMVVQRD   80 (81)
T ss_dssp             EEEEEEECTTSHHHHHSSCCTTCEEEEETTEECTTCCHHHHHHHHHTSTTEEEEEEEC-
T ss_pred             CEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCeEEEEEEeC
Confidence            78999999999999999339999999999999999999999999987666788888764

>4e34_A Golgi-associated PDZ and coiled-coil motif-contai protein; PDZ-peptide complex, protein transport-inhibitor complex; 1.40A {Homo sapiens} PDB: 4e35_A

Probab=99.06  E-value=6.6e-10  Score=80.79  Aligned_cols=56  Identities=27%  Similarity=0.455  Sum_probs=51.2

Q ss_pred             cEEEEEEcCCCHHhh-hCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEe
Q psy16075          3 GIFISRLVPGGLAES-TGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK   59 (241)
Q Consensus         3 GIfIs~VvpGSpAer-AGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~   59 (241)
                      +++|..|.+++||++ +|+ ++||+|++|||+++.++++++++.+++..+..+.|+|.
T Consensus        29 ~~~V~~V~~gspA~~~agl-~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~   85 (87)
T 4e34_A           29 PILISEIHPGQPADRCGGL-HVGDAILAVNGVNLRDTKHKEAVTILSQQRGEIEFEVV   85 (87)
T ss_dssp             EEEEEEECTTSHHHHHSCC-CTTEEEEEETTEECTTCCHHHHHHHHHHCCSEEEEEEE
T ss_pred             CEEEEEECCCCHHHhcCCC-CCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEE
Confidence            589999999999999 587 99999999999999999999999999987777888775

>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.05  E-value=8.1e-10  Score=83.75  Aligned_cols=59  Identities=29%  Similarity=0.528  Sum_probs=54.3

Q ss_pred             CcEEEEEEcCCCHHhhh-CCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecC
Q psy16075          2 PGIFISRLVPGGLAEST-GLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA   61 (241)
Q Consensus         2 pGIfIs~VvpGSpAerA-GLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~   61 (241)
                      .|++|..|.+++||+++ || ++||+|++|||+++.++++.+++.+++.....+.|+|.+.
T Consensus        41 ~gv~V~~V~~~spA~~aggL-~~GD~Il~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~R~  100 (107)
T 1uhp_A           41 EGIFVSKIVDSGPAAKEGGL-QIHDRIIEVNGRDLSRATHDQAVEAFKTAKEPIVVQVLRR  100 (107)
T ss_dssp             CCCEEEEECSSSHHHHTTCC-CSSCEEEEETTEECTTCCHHHHHHHHHHCCSSEEEEEEEC
T ss_pred             CCEEEEEeCCCChHHHcCCC-CCCCEEEEECCEECCCCCHHHHHHHHHcCCCcEEEEEEeC
Confidence            37999999999999999 76 9999999999999999999999999998777899988765

>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens}

Probab=99.05  E-value=8.7e-10  Score=86.81  Aligned_cols=62  Identities=23%  Similarity=0.393  Sum_probs=55.8

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCCc
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQ   63 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~q   63 (241)
                      .|++|..|.++|||+++|.|++||+|++|||+++.+++++++.++|+..++.+.|+|.+...
T Consensus        59 ~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~  120 (123)
T 2iwq_A           59 RGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSIIS  120 (123)
T ss_dssp             CSEEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSSEEEEEECCCC
T ss_pred             CCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCc
Confidence            47999999999999999933999999999999999888999999999887789999987543

>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.05  E-value=2.2e-10  Score=86.54  Aligned_cols=64  Identities=23%  Similarity=0.362  Sum_probs=57.1

Q ss_pred             cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCCccccc
Q psy16075          3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQRANM   67 (241)
Q Consensus         3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~q~~~~   67 (241)
                      +++|..|.+++||+++|| ++||+|++|||+++..++++++.++|+.....+.|+|.+.++....
T Consensus        30 ~~~V~~V~~~spA~~aGL-~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~R~g~~~~~   93 (103)
T 1v5l_A           30 PLVITRITPGSKAAAANL-CPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRAETRLWS   93 (103)
T ss_dssp             EEECSCBCTTSTTGGGTC-CTTCBEEEETTEECSSCCHHHHHHHHTTCCSEEECEECCCTTTTSC
T ss_pred             CeEEEEECCCCHHHHcCC-CCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEECCeEccC
Confidence            689999999999999997 9999999999999998889999999987755789999988775543

>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2

Probab=99.05  E-value=5.1e-10  Score=86.32  Aligned_cols=66  Identities=23%  Similarity=0.354  Sum_probs=56.7

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCc-EEEEEecCCccccc
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSN-LIITVKPANQRANM   67 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~-VtLtV~p~~q~~~~   67 (241)
                      .|++|..|.+++||+++|.|++||+|++|||++|.++++.+++.+++...+. +.++|.+.++..++
T Consensus        42 ~gv~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~~~~~l~v~R~~~~~~~  108 (119)
T 1x6d_A           42 KVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAILRQAREPRQAVIVTRKLTPEAM  108 (119)
T ss_dssp             SSCEEEEECSSSHHHHHTSSCTTCBCCEETTEECSSCCHHHHHHHHHHTTSSSEEEEEEECCCSSSC
T ss_pred             CCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCeEEEEEEcCCCccch
Confidence            4799999999999999994499999999999999999999999999887765 44777777665543

>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens}

Probab=99.05  E-value=1e-09  Score=81.08  Aligned_cols=62  Identities=29%  Similarity=0.501  Sum_probs=55.5

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCCcc
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQR   64 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~q~   64 (241)
                      .|++|..|.+++||+++|+ ++||+|++|||+++.+..+.+++..++..+..+.|+|.+.++.
T Consensus        34 ~g~~V~~V~~~spA~~aGl-~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~v~R~g~~   95 (97)
T 2w4f_A           34 EGIFISRVSEEGPAARAGV-RVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRVWRERET   95 (97)
T ss_dssp             CSEEEEEECTTSHHHHHTC-CTTCEEEEETTEECTTCCHHHHHHHHHTSCSEEEEEEECCSSC
T ss_pred             CCEEEEEECCCChHHHcCC-CCCCEEEEECCEECCCcCHHHHHHHHhCCCCeEEEEEEeCCcc
Confidence            4799999999999999996 9999999999999999888888888877666899999987654

>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens}

Probab=99.05  E-value=4.8e-10  Score=84.55  Aligned_cols=60  Identities=23%  Similarity=0.461  Sum_probs=52.3

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhC--CCcEEEEEecC
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVAN--SSNLIITVKPA   61 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKss--sg~VtLtV~p~   61 (241)
                      ++++|..|.+++||+++|.|++||+|++|||+++.+.++++++++|+..  +..|.|+|.+.
T Consensus        37 ~~~~V~~V~~~spA~~~ggl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~   98 (101)
T 2yt7_A           37 PTAVIANLLHGGPAERSGALSIGDRLTAINGTSLVGLPLAACQAAVRETKSQTSVTLSIVHC   98 (101)
T ss_dssp             CCEEEEEECTTSTTGGGSSCCTTCEEEEESSCBCTTSCHHHHHHHHHHTTTSSEEEEEECCC
T ss_pred             cCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEeC
Confidence            4799999999999999654599999999999999888999999999884  45688888763

>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.05  E-value=4.3e-10  Score=85.57  Aligned_cols=63  Identities=27%  Similarity=0.520  Sum_probs=55.8

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCCcc
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQR   64 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~q~   64 (241)
                      .|++|..|.+++||+++|.|++||+|++|||+++.++++++++.+++..+..+.|+|.+....
T Consensus        38 ~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~g~~v~l~v~R~~~~  100 (111)
T 2dlu_A           38 SGVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGMTSEQVAQVLRNCGNSVRMLVARDPAG  100 (111)
T ss_dssp             SSBEEEEECTTSSHHHHTCCCSSCEEEEESSCCCTTSCHHHHHHHHHHHCSEEEEEEEESCTT
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEeCCCC
Confidence            479999999999999999449999999999999999999999999987666789999876543

>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} SCOP: b.36.1.0

Probab=99.05  E-value=2.5e-10  Score=86.05  Aligned_cols=65  Identities=25%  Similarity=0.398  Sum_probs=58.1

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCCccccc
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQRANM   67 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~q~~~~   67 (241)
                      .|++|..|.+++||+++|+ ++||+|++|||+++.+++++++..+++..+..+.|+|.+.++...+
T Consensus        26 ~g~~V~~V~~~spA~~aGl-~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~r~~~~~~~   90 (106)
T 3ngh_A           26 DGHLIRVIEEGSPAEKAGL-LDGDRVLRINGVFVDKEEHAQVVELVRKSGNSVTLLVLDGDSYEKA   90 (106)
T ss_dssp             CSCEEECCCTTSHHHHTTC-CTTCEEEEETTEECTTSCHHHHHHHHHHTTTEEEEEEECHHHHHHH
T ss_pred             CCEEEEEeCCCCHHHHcCC-CCCCEEEEECCEECCCCCHHHHHHHHHhCCCEEEEEEEECCeeeee
Confidence            3789999999999999996 9999999999999999999999999987777899999987665444

>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A

Probab=99.05  E-value=7.8e-10  Score=81.07  Aligned_cols=57  Identities=28%  Similarity=0.424  Sum_probs=52.4

Q ss_pred             cEEEEEEcCCCHHhhh-CCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEec
Q psy16075          3 GIFISRLVPGGLAEST-GLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKP   60 (241)
Q Consensus         3 GIfIs~VvpGSpAerA-GLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p   60 (241)
                      |++|..|.+++||+++ |+ ++||+|++|||+++.++++.+++.+++..+..+.|+|.+
T Consensus        31 g~~V~~V~~~spA~~aggl-~~GD~I~~ing~~v~~~~~~~~~~~~~~~~~~v~l~v~r   88 (90)
T 1qav_A           31 PILISKIFKGLAADQTEAL-FVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKY   88 (90)
T ss_dssp             EEEEEEECTTSHHHHTTCC-CTTEEEEEETTEECTTCCHHHHHHHHHTCCSEEEEEEEE
T ss_pred             CEEEEEECCCCHHHhcCCC-CCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEE
Confidence            6899999999999999 66 999999999999999999999999999777778888865

>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A

Probab=99.05  E-value=9.3e-10  Score=83.55  Aligned_cols=63  Identities=27%  Similarity=0.499  Sum_probs=55.4

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhC--CCcEEEEEecCCcc
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVAN--SSNLIITVKPANQR   64 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKss--sg~VtLtV~p~~q~   64 (241)
                      .|++|..|.+++||+++|.|++||+|++|||+++.+++++++.++++..  +..+.|+|.+.++.
T Consensus        39 ~g~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~~~  103 (111)
T 2koj_A           39 APIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEVVSLLRSTKMEGTVSLLVFRQEEA  103 (111)
T ss_dssp             SCEEEEEECSSSHHHHHCSSCTTCEEEEETTEECTTSCHHHHHHHHHHCCCSSEEEEEEEECCCC
T ss_pred             cCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEeCCCC
Confidence            4799999999999999993399999999999999988999999999875  44788999887654

>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.04  E-value=1.6e-09  Score=84.63  Aligned_cols=64  Identities=36%  Similarity=0.555  Sum_probs=56.7

Q ss_pred             cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCCcccccc
Q psy16075          3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQRANMS   68 (241)
Q Consensus         3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~q~~~~~   68 (241)
                      |++|..|.+++||+++|| ++||+|++|||+++.++.+.+++++++. ...+.|+|.+.++..++.
T Consensus        47 gv~V~~V~~~spA~~aGL-~~GD~I~~vng~~v~~~~~~~~~~~~~~-~~~v~l~v~R~g~~~~~~  110 (128)
T 1uf1_A           47 GIYITGVDPGSEAEGSGL-KVGDQILEVNGRSFLNILHDEAVRLLKS-SRHLILTVKDVGRLPHAR  110 (128)
T ss_dssp             CCEEEEECTTCHHHHHTC-CTTCEEEEETTEECSSCCHHHHHHHHTT-CSEEEEEEECCSCCSSCS
T ss_pred             CEEEEEECCCCHHHHCCC-CCCCEEEEECCEECCCCCHHHHHHHHhc-CCeEEEEEEECCcccccc
Confidence            789999999999999997 9999999999999999889999999975 458999999888765543

>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A

Probab=99.04  E-value=7.8e-10  Score=86.14  Aligned_cols=59  Identities=25%  Similarity=0.390  Sum_probs=54.3

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEec
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKP   60 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p   60 (241)
                      ++++|..|.+++||+++|.|+.||+|++|||+++.++++++++.+++...+.+.|+|.+
T Consensus        45 ~~~~V~~v~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~r  103 (125)
T 3hpk_A           45 PCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNK  103 (125)
T ss_dssp             SSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHSCSEEEEEEEE
T ss_pred             CCEEEEEeCCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEE
Confidence            46899999999999999944999999999999999999999999999888888898876

>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.04  E-value=4.3e-10  Score=85.23  Aligned_cols=63  Identities=25%  Similarity=0.480  Sum_probs=57.0

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCCcc
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQR   64 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~q~   64 (241)
                      .|++|..|.+++||+++|.|++||+|++|||+++.++++.+++.+++..+..+.|+|.+.++.
T Consensus        42 ~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~~~  104 (108)
T 1q7x_A           42 GGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKGQSP  104 (108)
T ss_dssp             CCCBEEEECTTSTHHHHTCCCSSCEEEEETTEECBSCTTSHHHHHHHHTTSEEEEEEECCCCS
T ss_pred             CCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCcc
Confidence            479999999999999999449999999999999999999999999998777899999887654

>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.04  E-value=3.9e-10  Score=86.17  Aligned_cols=61  Identities=28%  Similarity=0.383  Sum_probs=53.1

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhC-----CCcEEEEEecCC
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVAN-----SSNLIITVKPAN   62 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKss-----sg~VtLtV~p~~   62 (241)
                      ++++|..|.+++||+++|.|++||+|++|||+++.+++|++++++|+..     ...+.|+|.+.+
T Consensus        32 ~~~~I~~v~~~s~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~~~~~i~l~v~r~~   97 (103)
T 1ufx_A           32 PLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAEAFKTKDRDYIDFLVTEFN   97 (103)
T ss_dssp             SSCEEEEECTTSHHHHHCSSCTTCBCCEETTEECTTCBHHHHHHHHHHHHHCSSCSEEEEEECCCC
T ss_pred             CcEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhcccCCCCeEEEEEEEcc
Confidence            3469999999999999995599999999999999999999999999874     446788887754

>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.04  E-value=1.2e-09  Score=83.06  Aligned_cols=63  Identities=29%  Similarity=0.485  Sum_probs=56.6

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCCccc
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQRA   65 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~q~~   65 (241)
                      .|++|..|.+++||+++|| ++||+|++|||+++.++.+.+++.+++..+..+.|+|.+.++..
T Consensus        46 ~g~~V~~V~~~spA~~aGL-~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~v~R~g~~~  108 (110)
T 1x5q_A           46 EGIFISRVSEEGPAARAGV-RVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRVWRESGPS  108 (110)
T ss_dssp             CSEEEEEECTTSHHHHHTC-CTTCEEEEETTEECTTCCHHHHHHHHHSCCSEEEEEEEECSSCC
T ss_pred             CCEEEEEECCCCHHHHcCC-CCCCEEEEECCEECCCcCHHHHHHHhhCCCCeEEEEEEECCccC
Confidence            4799999999999999996 99999999999999999999999998876668999999877654

>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.04  E-value=7.9e-10  Score=82.87  Aligned_cols=56  Identities=25%  Similarity=0.523  Sum_probs=51.7

Q ss_pred             EEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecC
Q psy16075          5 FISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA   61 (241)
Q Consensus         5 fIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~   61 (241)
                      +|..|.++|||+++|+ +.||+|++|||+++.+++++++.++|+..+..+.|+|.|.
T Consensus        34 ~V~~V~~~spA~~aGL-~~GD~Il~Ing~~v~~~~~~~~~~~l~~~g~~v~l~v~p~   89 (90)
T 1y7n_A           34 IICSLMRGGIAERGGV-RVGHRIIEINGQSVVATPHEKIVHILSNAVGEIHMKTMPA   89 (90)
T ss_dssp             EEEEECTTSHHHHHTC-CSSCEEEEETTEECTTSCHHHHHHHHHHCCEEEEEEEECC
T ss_pred             EEEEECCCCHHHHcCC-CCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEEC
Confidence            7999999999999996 9999999999999988899999999987766789998875

>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.03  E-value=8.5e-10  Score=80.96  Aligned_cols=61  Identities=31%  Similarity=0.628  Sum_probs=54.2

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCC
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPAN   62 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~   62 (241)
                      .+++|..|.+++||+++|.|++||+|++|||+++.+++++++..+++.....+.|+|.+..
T Consensus        30 ~~~~V~~V~~~spA~~aGgl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~r~~   90 (93)
T 2dkr_A           30 SPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKAAQGSVKLVVRSGP   90 (93)
T ss_dssp             CCCEEEEECTTSHHHHHCCCCTTCBEEEETTEECTTSCHHHHHHHHHHCCSEEEEEECCCC
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcEEEEEEeCC
Confidence            4789999999999999963399999999999999999999999999877777888887654

>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.03  E-value=3.4e-10  Score=85.51  Aligned_cols=62  Identities=32%  Similarity=0.433  Sum_probs=55.1

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhC--CCcEEEEEecCCc
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVAN--SSNLIITVKPANQ   63 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKss--sg~VtLtV~p~~q   63 (241)
                      .+++|..|.+++||+++|.|++||+|++|||+++.++++++++++|+..  ...|.|+|.+..+
T Consensus        34 ~~~~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~~   97 (103)
T 1uep_A           34 QPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLMHHAARNGQVNLTVRRKVL   97 (103)
T ss_dssp             SCCBEEEECTTSTTGGGTCCCTTCEEEEETTEECTTSCHHHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred             CCeEEEEeCCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCcEEEEEEeCCC
Confidence            3689999999999999994499999999999999988999999999876  4679999987654

>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens}

Probab=99.03  E-value=1e-09  Score=84.32  Aligned_cols=62  Identities=21%  Similarity=0.410  Sum_probs=55.1

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCCc
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQ   63 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~q   63 (241)
                      .|++|..|.+++||+++|.|++||+|++|||+++.++++.+++.+++..+..+.|+|.+.++
T Consensus        49 ~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~g~~v~l~v~R~~~  110 (112)
T 2r4h_A           49 MDLYVLRLAEDGPAERSGKMRIGDEILEINGETTKNMKHSRAIELIKNGGRRVRLFLKRGET  110 (112)
T ss_dssp             CCEEEEEECTTSHHHHTTCCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTEEEEEEECCEE
T ss_pred             CCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCc
Confidence            47999999999999999944999999999999999999999999998766678999987643

>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A*

Probab=99.03  E-value=1e-09  Score=83.40  Aligned_cols=58  Identities=28%  Similarity=0.383  Sum_probs=53.3

Q ss_pred             cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecC
Q psy16075          3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA   61 (241)
Q Consensus         3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~   61 (241)
                      |++|..|.+++||+++|+ +.||+|++|||+++.++++.++..+++..+..+.|+|.+.
T Consensus        46 gv~V~~V~~~spA~~aGl-~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v~l~v~~~  103 (109)
T 1q3o_A           46 LQYLESVDEGGVAWRAGL-RMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMV  103 (109)
T ss_dssp             SEEEEEECTTSHHHHTTC-CTTCEEEEETTEECTTCCHHHHHHHHHHTTTEEEEEEEEE
T ss_pred             CEEEEEECCCCHHHHcCC-CCCCEEEEECCEECCCCCHHHHHHHHHhCCCEEEEEEEEC
Confidence            799999999999999996 9999999999999999999999999987766788888764

>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1

Probab=99.03  E-value=1.2e-09  Score=79.95  Aligned_cols=59  Identities=19%  Similarity=0.361  Sum_probs=52.8

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecC
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA   61 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~   61 (241)
                      .|++|..|.+++||+++|+ ++||+|++|||+++.++.+.++..+++..+..+.|+|.+.
T Consensus        32 ~gv~V~~V~~~spA~~aGl-~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~R~   90 (91)
T 1m5z_A           32 KGVYVKNIRPAGPGDLGGL-KPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISRN   90 (91)
T ss_dssp             SCEEEEEECTTSHHHHHTC-CTTCEEEEETTEECTTCCHHHHHHHHHTSTTEEEEEEEEC
T ss_pred             CCEEEEEECCCCHHHHcCC-CCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEeC
Confidence            4799999999999999996 9999999999999999989999999986666788888653

>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.03  E-value=5.3e-10  Score=84.52  Aligned_cols=61  Identities=33%  Similarity=0.585  Sum_probs=55.3

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCC
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPAN   62 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~   62 (241)
                      .|++|..|.+++||+++|.|++||+|++|||+++.++++.+++.+++.....+.|+|.+..
T Consensus        38 ~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~~~g~~v~l~v~R~~   98 (105)
T 1wha_A           38 AGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLLTAASPTIALLLEREA   98 (105)
T ss_dssp             CSCEEEECCTTSSHHHHSSCCTTCEEEEESSCBCTTCCHHHHHHHHTSCCSCEEEEEEECC
T ss_pred             CCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECC
Confidence            4799999999999999994499999999999999999999999999877668999998764

>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.36.1.1 PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A

Probab=99.03  E-value=8.4e-10  Score=82.52  Aligned_cols=62  Identities=29%  Similarity=0.437  Sum_probs=55.6

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCCc
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQ   63 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~q   63 (241)
                      .|++|..|.+++||+++|.|++||+|++|||+++.+.++.+++.+++..+..+.|+|.+..+
T Consensus        35 ~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~r~~~   96 (104)
T 3i4w_A           35 EGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPE   96 (104)
T ss_dssp             CCEEEEEECTTSHHHHHCCCCTTEEEEEETTEECTTCCHHHHHHHHHTSCSEEEEEEEECHH
T ss_pred             CCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECcc
Confidence            38999999999999999934999999999999999999999999998777789999987643

>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.02  E-value=1.9e-09  Score=84.12  Aligned_cols=60  Identities=15%  Similarity=0.300  Sum_probs=53.9

Q ss_pred             cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCC--CcEEEEEecCC
Q psy16075          3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANS--SNLIITVKPAN   62 (241)
Q Consensus         3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsss--g~VtLtV~p~~   62 (241)
                      |++|..|.+++||+++|.|++||+|++|||+++.++++++++++|+...  ..|.|+|.+..
T Consensus        45 gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~  106 (123)
T 1ueq_A           45 FLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKLFQSVPIGQSVNLVLCRGY  106 (123)
T ss_dssp             CCEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTSCHHHHHHHHHTSCTTCEEEEEEEESC
T ss_pred             CEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEeCC
Confidence            6999999999999999944999999999999999999999999998753  57899998764

>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens}

Probab=99.02  E-value=5.6e-10  Score=81.67  Aligned_cols=59  Identities=34%  Similarity=0.555  Sum_probs=52.6

Q ss_pred             cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCC--cEEEEEecC
Q psy16075          3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSS--NLIITVKPA   61 (241)
Q Consensus         3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg--~VtLtV~p~   61 (241)
                      +++|..|.+++||+++|.|++||+|++|||+++.+++++++..+++....  .+.|+|.+.
T Consensus        28 ~~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~v~l~v~R~   88 (90)
T 2q9v_A           28 PIYIGHIVPLGAADTDGRLRSGDELISVDGTPVIGKSHQLVVQLMQQAAKQGHVNLTVRQT   88 (90)
T ss_dssp             CEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTSCHHHHHHHHHHHHHHTEEEEEEEEC
T ss_pred             CEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEec
Confidence            58999999999999999449999999999999998899999999987643  788888764

>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.02  E-value=1.2e-09  Score=82.55  Aligned_cols=60  Identities=25%  Similarity=0.422  Sum_probs=54.1

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCCc
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQ   63 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~q   63 (241)
                      .|++|..|.+++||+++|| ++||+|++|||+++.++++++++++|+. +..+.|+|.+...
T Consensus        41 ~g~~V~~V~~~spA~~aGL-~~GD~I~~ing~~v~~~~~~~~~~~l~~-~~~v~l~v~r~~~  100 (104)
T 1wi2_A           41 LGIFISKVIPDSDAHRAGL-QEGDQVLAVNDVDFQDIEHSKAVEILKT-AREISMRVRFFSG  100 (104)
T ss_dssp             CCCEEEEECTTSHHHHHTC-CTTCEEEEETTEECSSCCHHHHHHHHHH-SSSEEEEEECCCC
T ss_pred             CCEEEEEeCCCChHHHcCC-CCCCEEEEECCEECCCCCHHHHHHHHhC-CCEEEEEEEECCC
Confidence            3799999999999999996 9999999999999998889999999987 5679999987543

>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1

Probab=99.02  E-value=7.3e-10  Score=86.35  Aligned_cols=69  Identities=25%  Similarity=0.396  Sum_probs=60.7

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCC-cEEEEEecCCcccccccc
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSS-NLIITVKPANQRANMSVP   70 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg-~VtLtV~p~~q~~~~~~~   70 (241)
                      .+++|..|.+++||+++|+|++||+|++|||+++.+++++++.++|+...+ .+.|+|.+.++...+.+.
T Consensus        33 ~~~~V~~V~~~spA~~aGll~~GD~I~~ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~g~~~~~~~~  102 (127)
T 1b8q_A           33 PPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRGPEGFTTHLE  102 (127)
T ss_dssp             SCEEECCCSSSSSHHHHSSCCTTTCCCEETTEECSSSCHHHHHHHHHSCCSSCEEEEEECCCCSEEECCC
T ss_pred             CCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCeEEEEEEeCCceEEEEEE
Confidence            378999999999999999889999999999999998889999999987544 799999998877666544

>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.02  E-value=9.6e-10  Score=82.58  Aligned_cols=62  Identities=24%  Similarity=0.344  Sum_probs=54.9

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCCc
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQ   63 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~q   63 (241)
                      .+++|..|.+++||+++|.|++||+|++|||+++.++++.+++.+++.....+.|+|.+.++
T Consensus        38 ~~v~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~R~g~   99 (104)
T 2djt_A           38 TPLAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGLTHAQAVERIRAGGPQLHLVIRRPLS   99 (104)
T ss_dssp             CCCEEEEECTTCHHHHHCSCCTTCBEEEETTEECTTCCHHHHHHHHHHTCSEEEEEECCCCC
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCC
Confidence            36899999999999999934999999999999999889999999998766678999987654

>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A

Probab=99.02  E-value=8.4e-10  Score=87.60  Aligned_cols=59  Identities=31%  Similarity=0.559  Sum_probs=53.6

Q ss_pred             cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCC--CcEEEEEecC
Q psy16075          3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANS--SNLIITVKPA   61 (241)
Q Consensus         3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsss--g~VtLtV~p~   61 (241)
                      |++|..|.+++||+++|.|++||+|++|||+++.++++++++++|+...  ..|.|+|.+.
T Consensus        66 gv~V~~V~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~  126 (131)
T 1wfg_A           66 CAFITKVKKGSLADTVGHLRPGDEVLEWNGRLLQGATFEEVYNIILESKPEPQVELVVSRS  126 (131)
T ss_dssp             EEEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTCCHHHHHHHHHHTSSSSEEEEEEEEE
T ss_pred             CEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEEEEcC
Confidence            7999999999999999944999999999999999999999999998874  5688888764

>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.01  E-value=9.5e-10  Score=84.09  Aligned_cols=65  Identities=22%  Similarity=0.307  Sum_probs=57.3

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCCcccc
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQRAN   66 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~q~~~   66 (241)
                      .|++|..|.+++||+++|.|++||+|++|||+++.++++.+++.+++.....|.|+|.+.++...
T Consensus        43 ~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v~l~v~R~~~~~~  107 (116)
T 2dm8_A           43 NAIVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNSSHEEAITALRQTPQKVRLVVYRDEAHYR  107 (116)
T ss_dssp             SSEECCCCCSSSHHHHHTCCCTTCEEEEETTEECSSSCHHHHHHHHHTCCSEEEEEEECCSSCCC
T ss_pred             CCEEEEEECCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEeCCcccc
Confidence            48999999999999999944999999999999999889999999998777778999988765443

>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.01  E-value=1.5e-09  Score=81.27  Aligned_cols=60  Identities=32%  Similarity=0.563  Sum_probs=54.5

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCCc
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQ   63 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~q   63 (241)
                      .|++|..|.+++||+++|| ++||+|++|||+++..+++.+++.+++. +..+.|+|.+.++
T Consensus        36 ~gv~V~~V~~~spA~~aGL-~~GD~I~~ing~~v~~~~~~~~~~~~~~-~~~v~l~v~R~g~   95 (100)
T 2eeh_A           36 LGIFVSKVEEGSSAERAGL-CVGDKITEVNGLSLESTTMGSAVKVLTS-SSRLHMMVRRMGS   95 (100)
T ss_dssp             CCEEEEEECTTSHHHHHTC-CSSCEEEEETTEECSSCCHHHHHHHHHS-CSSEEEEEEECSC
T ss_pred             CCEEEEEECCCCHHHHcCC-CCCCEEEEECCEECCCCCHHHHHHhhcC-CCEEEEEEEECCc
Confidence            3799999999999999996 9999999999999998889999999985 6689999988764

>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} SCOP: b.36.1.1 PDB: 3nfl_A 2vph_A

Probab=99.01  E-value=1e-09  Score=82.85  Aligned_cols=58  Identities=31%  Similarity=0.464  Sum_probs=52.4

Q ss_pred             cEEEEEEcCCCHHhhhCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHhCCC----cEEEEEec
Q psy16075          3 GIFISRLVPGGLAESTGL-LAVNDEVLEVNGILVAGKSLDQVTDMMVANSS----NLIITVKP   60 (241)
Q Consensus         3 GIfIs~VvpGSpAerAGL-LqvGD~ILeINGqsV~glshdeVv~LLKsssg----~VtLtV~p   60 (241)
                      +++|..|.+++||+++|. |++||+|++|||+++.++++.+++.+++....    .|.|+|.+
T Consensus        44 ~~~V~~V~~~spA~~aG~rL~~GD~Il~ing~~v~~~~~~~~~~~i~~~~~~~~~~v~l~v~r  106 (107)
T 3nfk_A           44 PVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELMLLVRP  106 (107)
T ss_dssp             EEEEEEECTTSHHHHSSSCCCTTCEEEEETTEECTTCCHHHHHHHHHCGGGSBTTBEEEEEEC
T ss_pred             CeEEEEECCCCchHHcCCccCCCCEEEEECCEECCCCCHHHHHHHHHhccccCCcEEEEEEEc
Confidence            689999999999999992 49999999999999999999999999987654    78888876

>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.01  E-value=8.1e-10  Score=82.90  Aligned_cols=62  Identities=31%  Similarity=0.409  Sum_probs=55.6

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCCcc
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQR   64 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~q~   64 (241)
                      .|++|..|.+++||+++|+ ++||+|++|||+++..++++++..+++..+..+.|+|.+.+..
T Consensus        30 ~g~~V~~V~~~spA~~aGl-~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~r~~~~   91 (102)
T 2d90_A           30 KGQIIKDIEPGSPAEAAGL-KNNDLVVAVNGKSVEALDHDGVVEMIRKGGDQTTLLVLDKEAE   91 (102)
T ss_dssp             SSEEEECCCTTSTTTTTTC-CTTCEEEEESSCBCTTSCHHHHHHHHHHSTTEEEEEECSTTCC
T ss_pred             CCEEEEEECCCCHHHHcCC-CCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEECCCc
Confidence            4799999999999999997 9999999999999998889999999987766899999876543

>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.01  E-value=1.1e-09  Score=81.28  Aligned_cols=60  Identities=18%  Similarity=0.202  Sum_probs=54.1

Q ss_pred             cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCCc
Q psy16075          3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQ   63 (241)
Q Consensus         3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~q   63 (241)
                      +++|..|.+++||+++|+ ++||+|++|||+++..+++.++..+++.....+.|+|.+.++
T Consensus        33 ~v~V~~V~~~spA~~aGl-~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~v~R~g~   92 (94)
T 2eeg_A           33 PLTISRVHAGSKAALAAL-CPGDLIQAINGESTELMTHLEAQNRIKGCHDHLTLSVSSGPS   92 (94)
T ss_dssp             CCEECCCCSSSHHHHTTC-CTTCEEEEETTEETTTCCHHHHHHHHHTCCSCEEEEEECCSS
T ss_pred             CEEEEEECCCCHHHHcCC-CCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCC
Confidence            689999999999999996 999999999999999888999999998766678999987654

>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens}

Probab=99.00  E-value=1.3e-09  Score=80.02  Aligned_cols=62  Identities=18%  Similarity=0.440  Sum_probs=54.5

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCCc
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQ   63 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~q   63 (241)
                      .|++|..|.+++||+++|.|++||+|++|||+++.++++.++..+++..+..+.|+|.+.++
T Consensus        33 ~~~~V~~v~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~r~g~   94 (97)
T 2iwn_A           33 SGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE   94 (97)
T ss_dssp             CCCEEEEECTTCHHHHHCCCCTTCEEEEETTEECTTSCHHHHHHHHHTCCSEEEEEEEEEEE
T ss_pred             CCEEEEEeCCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCC
Confidence            37999999999999999934999999999999999999999999998766678898877543

>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.00  E-value=8.5e-10  Score=83.15  Aligned_cols=64  Identities=22%  Similarity=0.453  Sum_probs=56.8

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCCcccc
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQRAN   66 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~q~~~   66 (241)
                      .|++|..|.+++||+++|+ ++||+|++|||+++..+++.++..+++.....+.++|.+.+....
T Consensus        32 ~g~~V~~V~~~spA~~aGl-~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~r~~~~~~   95 (106)
T 2eei_A           32 KGVYMTDITPQGVAMRAGV-LADDHLIEVNGENVEDASHEEVVEKVKKSGSRVMFLLVDKETDKR   95 (106)
T ss_dssp             CSCEECCCCTTSHHHHHTC-CSSEEEEEETTEECTTCCHHHHHHHHHHHCSEEEEEECCTTTSCC
T ss_pred             CCEEEEEECCCCHHHHcCC-CCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEcCchhhH
Confidence            4789999999999999996 999999999999999999999999998777788999987665443

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A

Probab=99.00  E-value=9.6e-10  Score=89.05  Aligned_cols=64  Identities=17%  Similarity=0.377  Sum_probs=56.6

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCCccc
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQRA   65 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~q~~   65 (241)
                      .|++|..|.+++||+++|.|++||+|++|||++|.++++++++++|+.....+.|+|.+.++..
T Consensus       130 ~gv~V~~V~~gs~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~v~l~v~R~~~~~  193 (196)
T 3gsl_A          130 NSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYDVVYLKVAKPSNAE  193 (196)
T ss_dssp             CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCBHHHHHHHHHSCCEEEEEEEEEESCCC
T ss_pred             CCEEEEEECCCChHHhcCCCCCCCEEEEECCCcCCCCCHHHHHHHHHcCCCeEEEEEeCCCCcc
Confidence            3789999999999999994499999999999999988899999999877667899998866544

>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.00  E-value=5.3e-10  Score=83.51  Aligned_cols=62  Identities=18%  Similarity=0.368  Sum_probs=55.2

Q ss_pred             cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCCcc
Q psy16075          3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQR   64 (241)
Q Consensus         3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~q~   64 (241)
                      |++|..|.+++||+++|.|++||+|++|||+++.++++.++..+++..+..+.|+|.+.++.
T Consensus        37 ~~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~~~   98 (103)
T 1wfv_A           37 DLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIKSGGRRVRLLLKRGTGS   98 (103)
T ss_dssp             EEECCCBCTTSHHHHHCSSCTTCEEEEETTEECSSCCHHHHHHHHHHHCSEECEEEECTTCS
T ss_pred             CEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCCC
Confidence            78999999999999999339999999999999999999999999986666788999886654

>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus}

Probab=99.00  E-value=2.6e-10  Score=87.52  Aligned_cols=66  Identities=24%  Similarity=0.387  Sum_probs=59.0

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCCcccccc
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQRANMS   68 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~q~~~~~   68 (241)
                      .|++|..|.+++||+++|+ ++||+|++|||+++.+.+++++..+++..+..+.|+|.+.++...+.
T Consensus        38 ~g~~V~~V~~~spA~~aGL-~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~R~~~~~~~~  103 (114)
T 2edz_A           38 DGHLIRVIEEGSPAEKAGL-LDGDRVLRINGVFVDKEEHAQVVELVRKSGNSVTLLVLDGDSYEKAV  103 (114)
T ss_dssp             CSCEEECCCTTCTTGGGTC-CTTCEEEEESSSBCSSSCHHHHHHHHHHTCSEEEEEEECHHHHHHHH
T ss_pred             CCeEEEEeCCCChHHHcCC-CCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEECCcceehh
Confidence            4789999999999999997 99999999999999988899999999877668999999887665553

>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A

Probab=99.00  E-value=1.3e-09  Score=87.52  Aligned_cols=66  Identities=26%  Similarity=0.438  Sum_probs=54.8

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCC-cEEEEEecCCcccccc
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSS-NLIITVKPANQRANMS   68 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg-~VtLtV~p~~q~~~~~   68 (241)
                      .|++|..|.+++||+++|| ++||+|++|||+++.+++++++..+|+...+ .+.|+|.+.++...+.
T Consensus        64 ~gv~V~~V~~~spA~~aGL-~~GD~I~~vng~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~g~~~~v~  130 (139)
T 2vz5_A           64 KGIYVTRVSEGGPAEIAGL-QIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTRQSLQKAVQ  130 (139)
T ss_dssp             CCEEEEEECTTSHHHHHTC-CTTCEEEEETTEECTTCCHHHHHHHHCCTTCSEEEEEEEECC------
T ss_pred             CCEEEEEECCCCHHHHCCC-CCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCEEEEEEEECCEEEEEE
Confidence            4899999999999999996 9999999999999999999999999986444 6899999887766543

>3sfj_A TAX1-binding protein 3; PDZ:peptide complex, signaling protein-inhibitor complex; 1.24A {Homo sapiens} PDB: 3dj3_A

Probab=99.00  E-value=1.6e-09  Score=81.13  Aligned_cols=58  Identities=29%  Similarity=0.489  Sum_probs=51.7

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCC-cEEEEEec
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSS-NLIITVKP   60 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg-~VtLtV~p   60 (241)
                      .|++|..|.++|||+++|+ ++||+|++|||+++.+++|+++..+++...+ .+.|+|.+
T Consensus        45 ~gv~V~~V~~~spA~~aGl-~~GD~I~~ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R  103 (104)
T 3sfj_A           45 KGIYVTRVSEGGPAEIAGL-QIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTR  103 (104)
T ss_dssp             CSEEEEEECTTSHHHHHTC-CTTCEEEEETTEECTTCCHHHHHHHHTCTTCSEEEEEEEE
T ss_pred             CCEEEEEECCCChHHHcCC-CCCCEEEEECCEECCCCCHHHHHHHHHhCCCCEEEEEEEc
Confidence            3799999999999999996 9999999999999998899999999976544 68888765

>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=98.99  E-value=9.3e-10  Score=84.63  Aligned_cols=62  Identities=23%  Similarity=0.405  Sum_probs=55.6

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCCc
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQ   63 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~q   63 (241)
                      .|++|..|.+++||+++|.|++||+|++|||+++.++++.+++.+++..+..+.|+|.+...
T Consensus        50 ~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~r~~~  111 (117)
T 2ehr_A           50 KGIFIKQVLEDSPAGKTNALKTGDKILEVSGVDLQNASHSEAVEAIKNAGNPVVFIVQSLSS  111 (117)
T ss_dssp             CSEEEEEECSSSTTTSSCSCCTTCEEEEESSCBCTTCCHHHHHHHHHTSCSSEEEEECCBSC
T ss_pred             CCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCC
Confidence            48999999999999999944999999999999999999999999999777789999986543

>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.99  E-value=1.4e-09  Score=84.74  Aligned_cols=64  Identities=20%  Similarity=0.361  Sum_probs=55.7

Q ss_pred             cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCC--CcEEEEEecCCcccc
Q psy16075          3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANS--SNLIITVKPANQRAN   66 (241)
Q Consensus         3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsss--g~VtLtV~p~~q~~~   66 (241)
                      +++|..|.+++||+++|.|++||+|++|||+++.+++++++.++|+...  ..+.|+|.+..+...
T Consensus        46 ~~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~~~~~  111 (122)
T 1v5q_A           46 PPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTLEIEFDVAESV  111 (122)
T ss_dssp             CCEEEEECTTSHHHHSCCCCTTCCEEEETTEESSSSCHHHHHHHHHHHTTTTCEEEEEEEECCCSC
T ss_pred             CcEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEECCcccc
Confidence            5799999999999999934999999999999999888999999998764  479999998765443

>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2

Probab=98.99  E-value=3.4e-10  Score=89.47  Aligned_cols=60  Identities=18%  Similarity=0.341  Sum_probs=53.3

Q ss_pred             cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCc-EEEEEecCC
Q psy16075          3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSN-LIITVKPAN   62 (241)
Q Consensus         3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~-VtLtV~p~~   62 (241)
                      +++|..|.+++||+++|.|++||+|++|||+++.+++|++++++|+...+. +.|+|.+..
T Consensus        58 ~i~I~~V~~gs~A~~aggL~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~v~l~v~r~~  118 (130)
T 1i16_A           58 PLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVIRRKS  118 (130)
T ss_dssp             CCEEEEECSSCCCSSSCCCCTTCCEEECSSCBGGGSCHHHHHHHHHTSCSSEEEEEEEEES
T ss_pred             CEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCceEEEEEEeCC
Confidence            699999999999999933499999999999999999999999999987664 888887653

>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens}

Probab=98.99  E-value=1.9e-09  Score=84.04  Aligned_cols=60  Identities=13%  Similarity=0.119  Sum_probs=53.6

Q ss_pred             cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCc-EEEEEecCCc
Q psy16075          3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSN-LIITVKPANQ   63 (241)
Q Consensus         3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~-VtLtV~p~~q   63 (241)
                      +++|..|.+++||+++|+ +.||+|++|||+++..++++++.++|+...+. +.|+|.+...
T Consensus        45 ~v~V~~V~~gspA~~AGL-~~GD~Il~VnG~~v~~~~~~dv~~~i~~~~~~~v~l~V~~~~~  105 (109)
T 2vsv_A           45 PVQVHFLDPYCSASVAGA-REGDYIVSIQLVDCKWLTLSEVMKLLKSFGEDEIEMKVVSLLD  105 (109)
T ss_dssp             SCEEEEECTTSHHHHTTC-CTTCEEEEETTEECTTCCHHHHHHHHHTTTTSCEEEEEESCC-
T ss_pred             CeEEEEECCCCHHHHcCC-CCCCEEEEECCEECCCCCHHHHHHHHHhCCCCeEEEEEEECCC
Confidence            578999999999999997 99999999999999988999999999877664 9999987543

>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.99  E-value=1.7e-09  Score=83.14  Aligned_cols=65  Identities=23%  Similarity=0.409  Sum_probs=55.9

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCCccccc
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQRANM   67 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~q~~~~   67 (241)
                      .|++|..|.+++||+++|| ++||+|++|||+++.++.+.++..+++.....+.|+|.+..+..++
T Consensus        42 ~gv~V~~V~~~spA~~aGL-~~GD~Il~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~r~~~~~~~  106 (117)
T 1uit_A           42 GGIYVSKVTVGSIAHQAGL-EYGDQLLEFNGINLRSATEQQARLIIGQQCDTITILAQYNPHVHQL  106 (117)
T ss_dssp             SCEEEEEECTTSHHHHHTC-CTTCEECEETTEETTTCCHHHHHHHTTSCCSEEEEEECCCSCCCCC
T ss_pred             CCEEEEEECCCCHHHHcCC-CCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCchhhh
Confidence            4799999999999999996 9999999999999998888888876665566799999987766544

>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens}

Probab=98.99  E-value=5.6e-10  Score=80.72  Aligned_cols=58  Identities=26%  Similarity=0.332  Sum_probs=52.6

Q ss_pred             cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecC
Q psy16075          3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA   61 (241)
Q Consensus         3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~   61 (241)
                      |++|..|.+++||+++|+ +.||+|++|||+++.+++++++..+++.....+.|+|.+.
T Consensus        24 ~~~V~~V~~~spA~~aGl-~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~R~   81 (83)
T 2kv8_A           24 PCVLSCVMRGSPADFVGL-RAGDQILAVNEINVKKASHEDVVKLIGKCSGVLHMVIAEG   81 (83)
T ss_dssp             SCBCCBCCTTSTTTTTTC-CTTCEEEEETTEECSSCCHHHHHHHHTTCSSCEEEEEECC
T ss_pred             CeEEEEeCCCChHHHcCC-CCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEcC
Confidence            578999999999999996 9999999999999999899999999987666788988764

>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens}

Probab=98.98  E-value=8.6e-10  Score=82.03  Aligned_cols=61  Identities=31%  Similarity=0.563  Sum_probs=52.9

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCc-EEEEEecCCc
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSN-LIITVKPANQ   63 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~-VtLtV~p~~q   63 (241)
                      .|++|..|.+++||+++|+ ++||+|++|||+++..++++++.++|+...+. +.++|.+.++
T Consensus        33 ~g~~V~~V~~~spA~~aGl-~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~~l~v~R~g~   94 (98)
T 2jxo_A           33 PGQFIRSVDPDSPAEASGL-RAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKLLVVDRETD   94 (98)
T ss_dssp             SCEEEEEECTTSHHHHHTC-CTTCEEEEETTEECTTCCHHHHHHHHHTTTTEEEEEECCHHHH
T ss_pred             CCEEEEEECCCCHHHHcCC-CCCCEEEEECCEECCCCCHHHHHHHHHhCCCcEEEEEEECCch
Confidence            4899999999999999996 99999999999999988899999999877554 4577766543

>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens}

Probab=98.98  E-value=2.2e-09  Score=83.80  Aligned_cols=61  Identities=26%  Similarity=0.497  Sum_probs=53.8

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhC--CCcEEEEEecCC
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVAN--SSNLIITVKPAN   62 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKss--sg~VtLtV~p~~   62 (241)
                      .|++|..|.+++||+++|.|++||+|++|||+++.+++++++.++++..  +..|.|+|.+.+
T Consensus        58 ~gv~V~~V~~gspA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~g  120 (121)
T 2kom_A           58 APIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVGKSQEEVVSLLRSTKMEGTVSLLVFRQE  120 (121)
T ss_dssp             CCEEEEEECTTSHHHHHTCCCSSSEEEEETTEECTTSCHHHHHHHHHHCCSSCEEEEEEEECC
T ss_pred             CCEEEEEECCCChHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCCEEEEEEEeCC
Confidence            4799999999999999993399999999999999988899999999875  346888887754

>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.98  E-value=9e-10  Score=82.92  Aligned_cols=59  Identities=24%  Similarity=0.259  Sum_probs=53.5

Q ss_pred             cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCC
Q psy16075          3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPAN   62 (241)
Q Consensus         3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~   62 (241)
                      +++|..|.+++||+++|+ ++||+|++|||+++.++++.++..+++...+.+.|+|.+..
T Consensus        37 ~~~V~~V~~~spA~~aGL-~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v~l~v~R~~   95 (100)
T 1whd_A           37 PVRVQAVDSGGPAERAGL-QQLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILLVWRVS   95 (100)
T ss_dssp             SCBCCBCCTTSHHHHHTC-CSSCEEEEETTEECTTCCHHHHHHHHHHCSSEEEEEEEECC
T ss_pred             CEEEEEECCCCHHHHcCC-CCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECC
Confidence            678999999999999997 99999999999999998999999999887777888887753

>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.96  E-value=9.2e-10  Score=84.88  Aligned_cols=62  Identities=29%  Similarity=0.437  Sum_probs=55.0

Q ss_pred             cEEEEEEcCCCHHhhh--CCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCC----CcEEEEEecCCccc
Q psy16075          3 GIFISRLVPGGLAEST--GLLAVNDEVLEVNGILVAGKSLDQVTDMMVANS----SNLIITVKPANQRA   65 (241)
Q Consensus         3 GIfIs~VvpGSpAerA--GLLqvGD~ILeINGqsV~glshdeVv~LLKsss----g~VtLtV~p~~q~~   65 (241)
                      |++|..|.+++||+++  || ++||+|++|||+++.++++.+++.+++...    ..+.|+|.+.....
T Consensus        42 ~v~V~~V~~~spA~~a~gGL-~~GD~Il~ing~~v~~~~~~~~~~~~~~~~~~~~~~v~l~v~R~~~~~  109 (119)
T 2cs5_A           42 PVIVSRVAPGTPADLCVPRL-NEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELMLLVRPNAVYD  109 (119)
T ss_dssp             EEEEEEECSSSTTTSSSSCC-CTTCEEEEETTBCTTSSCHHHHHHHHHHHHHCCSSCEEEEEECCCCCC
T ss_pred             CeEEEEECCCCHHHHhhcCC-CCCCEEEEECCEECCCCCHHHHHHHHHhccccCCCEEEEEEEcccccC
Confidence            6899999999999999  76 999999999999999999999999998764    37999998875433

>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens}

Probab=98.96  E-value=1.6e-09  Score=79.14  Aligned_cols=60  Identities=25%  Similarity=0.466  Sum_probs=52.3

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhC--CCcEEEEEecCC
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVAN--SSNLIITVKPAN   62 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKss--sg~VtLtV~p~~   62 (241)
                      .|++|..|.+++||+++|+ ++||+|++|||+++.+.+++++..+++..  +..+.|+|.+.+
T Consensus        28 ~g~~V~~V~~~spA~~aGl-~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~g   89 (90)
T 2eaq_A           28 PGIFVASVEAGSPAEFSQL-QVDDEIIAINNTKFSYNDSKEWEEAMAKAQETGHLVMDVRRYG   89 (90)
T ss_dssp             TEEEEEEECTTSHHHHTTC-CTTCEEEEETTEECCTTCHHHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred             CCEEEEEECCCChHHHcCC-CCCCEEEEECCEEccCCCHHHHHHHHHhcCCCCEEEEEEEeCC
Confidence            4789999999999999997 99999999999999666999999999753  457888887654

>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.95  E-value=1.1e-09  Score=84.35  Aligned_cols=61  Identities=28%  Similarity=0.317  Sum_probs=54.4

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCCcc
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQR   64 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~q~   64 (241)
                      .|++|..|.+++||+ +|| ++||+|++|||+++.++++.+++.+++..+..+.|+|.+..+.
T Consensus        46 ~gv~V~~V~~~spA~-~gL-~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~v~l~v~R~~~~  106 (117)
T 2csj_A           46 TSIVISDVLPGGPAD-GLL-QENDRVVMVNGTPMEDVLHSFAVQQLRKSGKIAAIVVKRPRKV  106 (117)
T ss_dssp             CBCEEEEECTTSSHH-HHB-CTTCEEEEESSCBCBTCCHHHHHHHHHHSCSEEEEEEEEEEEC
T ss_pred             CCEEEEEECCCCccc-ccC-CCCCEEEEECCEECCCcCHHHHHHHHhcCCCeEEEEEEECCcc
Confidence            369999999999997 787 9999999999999999999999999998777899999876543

>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A

Probab=98.94  E-value=2.3e-09  Score=79.48  Aligned_cols=60  Identities=22%  Similarity=0.421  Sum_probs=53.4

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCCc
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQ   63 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~q   63 (241)
                      .|++|..|.+++||+++|| ++||+|++|||+++..+.+.+++.+++ .+..+.|+|.+..+
T Consensus        29 ~g~~V~~V~~~spA~~aGL-~~GD~I~~ing~~v~~~~~~~~~~~~~-~g~~v~l~v~R~~~   88 (93)
T 2dls_A           29 RIVLVQSVRPGGAAMKAGV-KEGDRIIKVNGTMVTNSSHLEVVKLIK-SGAYVALTLLGSSS   88 (93)
T ss_dssp             SSCEEEEECSSSTTTTTTC-CSSCEEEEETTEECSSSCHHHHHHHHT-SSSEEEEEEECCCC
T ss_pred             CCEEEEEECCCCHHHHcCC-CCCCEEEEECCEECCCCCHHHHHHhhc-CCCEEEEEEEECCC
Confidence            3789999999999999996 999999999999999998999999987 56679999987643

>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A

Probab=98.94  E-value=4.6e-09  Score=81.50  Aligned_cols=60  Identities=25%  Similarity=0.377  Sum_probs=53.4

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecC
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA   61 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~   61 (241)
                      ++++|..|.+++||+++|.|++||+|++|||+++.+.+++++.++++...+.+.|+|.+.
T Consensus        50 ~~~~V~~V~~gspA~~aG~L~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~  109 (114)
T 2gzv_A           50 PCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL  109 (114)
T ss_dssp             CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSEEEEEEECC
T ss_pred             CCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEec
Confidence            369999999999999999349999999999999988899999999988777788888654

>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens}

Probab=98.94  E-value=2.4e-09  Score=83.13  Aligned_cols=69  Identities=29%  Similarity=0.468  Sum_probs=58.5

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCc-EEEEEecCCcccc--ccccc
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSN-LIITVKPANQRAN--MSVPR   71 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~-VtLtV~p~~q~~~--~~~~R   71 (241)
                      .|++|..|.+++||+++|+ +.||+|++|||+++.+++++++..+|+...+. +.++|.+.++...  +.+.+
T Consensus        33 ~gv~V~~V~~~spA~~aGl-~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~~l~v~R~g~~~~~~~~l~~  104 (128)
T 2kjd_A           33 PGQFIRSVDPDSPAEASGL-RAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKLLVVDRETDEFFKKCRVIP  104 (128)
T ss_dssp             CSEEEEEECTTSHHHHHTC-CTTCEEEEETTEECTTCCHHHHHHHHHTTCSEEEEEEECHHHHHHHHHHTCCC
T ss_pred             CCEEEEEeCCCChHHHcCC-CCCCEEEEECCEECCCCCHHHHHHHHHhCCCCEEEEEEEeCCcceEEEEEEEe
Confidence            4799999999999999996 99999999999999988899999999877554 6688888776555  54443

>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A

Probab=98.93  E-value=3e-09  Score=78.66  Aligned_cols=58  Identities=21%  Similarity=0.367  Sum_probs=52.9

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecC
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA   61 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~   61 (241)
                      .|++|..|.+++||++ || ++||+|++|||+++.++++.+++.+++.....+.|+|.+.
T Consensus        35 ~gv~V~~V~~~spA~~-gL-~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~R~   92 (95)
T 1mfg_A           35 DGIFVTRVQPEGPASK-LL-QPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVRE   92 (95)
T ss_dssp             CCEEEEEECTTSTTTT-TC-CTTCEEEEETTEECTTCBHHHHHHHHHHCCSEEEEEEEEE
T ss_pred             CCEEEEEECCCCchhh-CC-CCCCEEEEECCEEcCCCCHHHHHHHhhcCCCeEEEEEEeC
Confidence            3899999999999999 97 9999999999999999999999999987777889988764

>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens}

Probab=98.93  E-value=1.6e-09  Score=81.65  Aligned_cols=56  Identities=23%  Similarity=0.357  Sum_probs=51.0

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEE
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITV   58 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV   58 (241)
                      .+++|..|.+++||+++|+ ++||+|++|||+++.+++++++.++|+...+.+.|+|
T Consensus        48 ~~~~V~~V~~~spA~~aGl-~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v~l~v  103 (104)
T 2z17_A           48 MFTLICKIQEDSPAHCAGL-QAGDVLANINGVSTEGFTYKQVVDLIRSSGNLLTIET  103 (104)
T ss_dssp             CCEEEEEECTTSHHHHHTC-CTTCBCCEETTEECTTCCHHHHHHHHHHTTTEEEEEC
T ss_pred             CCeEEEEECCCChHHHcCC-CCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEE
Confidence            3799999999999999996 9999999999999999999999999998866676665

>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.93  E-value=2e-09  Score=80.97  Aligned_cols=60  Identities=20%  Similarity=0.321  Sum_probs=53.5

Q ss_pred             cEEEEEEcCCCHHhhh-CCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCCcc
Q psy16075          3 GIFISRLVPGGLAEST-GLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQR   64 (241)
Q Consensus         3 GIfIs~VvpGSpAerA-GLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~q~   64 (241)
                      +++|..|.+++||+++ || ++||+|++|||+++... +++++.+++.....+.|+|.+.++.
T Consensus        36 ~v~V~~V~~~spA~~agGL-~~GD~I~~ing~~v~~~-~~~~~~~~~~~~~~v~l~v~R~~~~   96 (100)
T 2edp_A           36 PLTVSKIEDGGKAALSQKM-RTGDELVNINGTPLYGS-RQEALILIKGSFRILKLIVRRRNSG   96 (100)
T ss_dssp             EEEECCCCTTSHHHHHTSC-CTTCEEEEETTEECCSC-SHHHHHHHHTCCSSCEEEEEECCCS
T ss_pred             CeEEEEECCCCHHHHcCCC-CCCCEEEEECCEEccch-HHHHHHHHHhCCCeEEEEEEeCCCC
Confidence            5899999999999999 76 99999999999999976 8999999987766899999887653

>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.93  E-value=5.7e-10  Score=87.40  Aligned_cols=61  Identities=31%  Similarity=0.548  Sum_probs=54.9

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCCc
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQ   63 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~q   63 (241)
                      .|++|..|.+++||+++|| ++||+|++|||++|.++++++++++|+..+..|.|+|.+.++
T Consensus        61 ~gv~V~~V~~~spA~~aGL-~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~r~~~  121 (126)
T 2yuy_A           61 DTIFVKQVKEGGPAFEAGL-CTGDRIIKVNGESVIGKTYSQVIALIQNSDTTLELSVMPKDS  121 (126)
T ss_dssp             CCCCBCCCCSSSHHHHHTC-CSSCCCCEETTEECSSCCHHHHHHHHHTCTTEEEEECCCCCC
T ss_pred             CCEEEEEECCCChHHHcCC-CCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEECCC
Confidence            3589999999999999996 999999999999999999999999999776678899887654

>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A

Probab=98.92  E-value=3.1e-09  Score=87.20  Aligned_cols=64  Identities=19%  Similarity=0.363  Sum_probs=57.5

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEec---CCccccc
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKP---ANQRANM   67 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p---~~q~~~~   67 (241)
                      .|++|..|.+++||++ || ++||+|++|||+++.++++.+++.+++..++.|.|+|.+   .++...+
T Consensus        24 ~g~~V~~v~~~spA~~-gl-~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~r~~~~G~~~~~   90 (195)
T 2qbw_A           24 DGIFVTRVQPEGPASK-LL-QPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVREVGNGAKQEI   90 (195)
T ss_dssp             CSEEEEEECTTSTTTT-TC-CTTCEEEEETTEECTTCCHHHHHHHHHHCCSEEEEEEEEECSSSCEEEE
T ss_pred             CCEEEEEECCCChHHh-CC-CCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEEcCCCCCCcee
Confidence            4899999999999999 97 999999999999999999999999999888889999988   6654443

>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.92  E-value=2.3e-09  Score=83.35  Aligned_cols=58  Identities=22%  Similarity=0.400  Sum_probs=51.9

Q ss_pred             cEEEEEEcCCCHHhhh-CCCCCCCEEEEECCEEcCCCCHHHHHHHHHhC----CCcEEEEEecC
Q psy16075          3 GIFISRLVPGGLAEST-GLLAVNDEVLEVNGILVAGKSLDQVTDMMVAN----SSNLIITVKPA   61 (241)
Q Consensus         3 GIfIs~VvpGSpAerA-GLLqvGD~ILeINGqsV~glshdeVv~LLKss----sg~VtLtV~p~   61 (241)
                      .++|.+|.+++||+++ || ++||+|++|||+++.+++|++++++|+..    +..|.|+|.+.
T Consensus        44 ~i~I~~V~~gspA~~aggL-~~GD~Il~Ing~~v~~~~~~~~~~~l~~~~~~~g~~v~l~v~r~  106 (118)
T 1v6b_A           44 KVVVSAVYEGGAAERHGGV-VKGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGDWIDLVVAVC  106 (118)
T ss_dssp             SEEEEECCTTSHHHHHCSS-CTTCEEEEESSCBCTTCBHHHHHHHHHHHHHHTCSEEEEEEECC
T ss_pred             CEEEEEECCCCHHHHcCCC-CCCCEEEEECCEECCCCCHHHHHHHHHHhhhcCCCeEEEEEEeC
Confidence            3899999999999999 65 99999999999999999999999999865    44789988874

>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.92  E-value=1.7e-09  Score=86.71  Aligned_cols=60  Identities=27%  Similarity=0.347  Sum_probs=53.3

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCC--CcEEEEEecC
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANS--SNLIITVKPA   61 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsss--g~VtLtV~p~   61 (241)
                      .+++|..|.+++||+++|.|++||+|++|||++|.+.++++++++|+...  ..|.|+|.+.
T Consensus        49 ~~v~V~~V~~gspA~~aG~L~~GD~Il~VnG~~v~~~s~~d~~~~l~~~~~G~~v~l~V~R~  110 (126)
T 1wif_A           49 PYLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNITIGTVLQIKAYRG  110 (126)
T ss_dssp             TEEEECCCCTTSSGGGCSSSCTTCBEEEESSSCCTTCCHHHHHHHHTSCCSSCEEEEEEESS
T ss_pred             CcEEEEEECCCCHHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCCEEEEEEEEC
Confidence            36789999999999999955999999999999998889999999998743  4689999886

>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A

Probab=98.90  E-value=3.4e-09  Score=83.48  Aligned_cols=63  Identities=17%  Similarity=0.309  Sum_probs=54.8

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHh--CCCcEEEEEecCCccc
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVA--NSSNLIITVKPANQRA   65 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKs--ssg~VtLtV~p~~q~~   65 (241)
                      .|++|..|.+++||+++|| ++||+|++|||+++..++++++..+|+.  .+..+.|+|.+..+..
T Consensus        51 ~gv~V~~V~~gspA~~aGL-~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~~~~  115 (124)
T 3tsv_A           51 VGIFVAGVLEDSPAAKEGL-EEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKKDVY  115 (124)
T ss_dssp             SCEEEEEECTTCHHHHTTC-CTTEEEEEETTEECSSCCHHHHHHHHHHSCTTCEEEEEEEECHHHH
T ss_pred             CCEEEEEECCCCHHHHcCC-CCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEEEEECCchh
Confidence            3799999999999999996 9999999999999998888999998875  3446889998876543

>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.90  E-value=7e-10  Score=84.60  Aligned_cols=61  Identities=30%  Similarity=0.403  Sum_probs=53.9

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCC
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPAN   62 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~   62 (241)
                      .|++|..|.+++||+++|.|++||+|++|||+++.++++.+++.+++.....+.|+|.+..
T Consensus        44 ~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~~g~~v~l~v~r~~  104 (111)
T 1uju_A           44 EGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQLLRSVGDTLTVLVCDGF  104 (111)
T ss_dssp             CCCEEEEECTTSHHHHHSSCCTTCBCCBBSSCBCTTSCHHHHHHHHSSCSSEEEECCCCCC
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECC
Confidence            3789999999999999994499999999999999999999999999876667888877653

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}

Probab=98.90  E-value=3.4e-09  Score=87.48  Aligned_cols=60  Identities=18%  Similarity=0.265  Sum_probs=54.2

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecC
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA   61 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~   61 (241)
                      .|++|..|.++|+|+++|.|++||+|++|||++|.++++++++.+++...+.+.|+|.+.
T Consensus       136 ~gv~V~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~L~V~R~  195 (206)
T 3r0h_A          136 IGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGANGKVSMEVTRP  195 (206)
T ss_dssp             SCEEEEEECTTSCHHHHHHCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEEEEEEE
T ss_pred             ceEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeC
Confidence            479999999999999999339999999999999999999999999988777888988764

>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A 2lsr_A

Probab=98.89  E-value=3.9e-09  Score=88.08  Aligned_cols=59  Identities=32%  Similarity=0.620  Sum_probs=54.6

Q ss_pred             cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCCc
Q psy16075          3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQ   63 (241)
Q Consensus         3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~q   63 (241)
                      |++|..|.++|||+++|+ ++||+|++|||++|.++++++++.+++. +..+.|+|.+.++
T Consensus       111 ~~~V~~V~~gspA~~aGL-~~GD~Il~vng~~v~~~~~~~~~~~l~~-~~~v~l~v~r~g~  169 (192)
T 3k1r_A          111 GLFISHLIKGGQADSVGL-QVGDEIVRINGYSISSCTHEEVINLIRT-EKTVSIKVRHIGL  169 (192)
T ss_dssp             EEEEEEECTTSHHHHTTC-CTTEEEEEETTEECTTCCHHHHHHHHTS-SSEEEEEEEECCE
T ss_pred             CEEEEEECCCChHHHcCC-CCCCEEEEECCEECCCCCHHHHHHHHcC-CCeEEEEEEECCc
Confidence            789999999999999995 9999999999999999999999999987 6689999998765

>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}

Probab=98.89  E-value=7.7e-09  Score=92.39  Aligned_cols=62  Identities=24%  Similarity=0.381  Sum_probs=56.8

Q ss_pred             cEEEEEEcCCCHHhh-hCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCCccc
Q psy16075          3 GIFISRLVPGGLAES-TGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQRA   65 (241)
Q Consensus         3 GIfIs~VvpGSpAer-AGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~q~~   65 (241)
                      |++|..|.+++||++ +|| ++||+|++|||++|.++++++++.+|+..+..|.|+|.+..+..
T Consensus       104 gi~V~~V~~gspA~~~aGL-~~GD~Il~VNG~~v~~~t~~e~v~~l~~~g~~V~L~V~R~~~~~  166 (263)
T 1z87_A          104 PILISKIFKGLAADQTEAL-FVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYMKEVS  166 (263)
T ss_dssp             EEEEEECCTTSHHHHCTTC-CSSCEEEEESSCBCTTSCHHHHHHHHHHCCSCCCEEEECCSSSS
T ss_pred             CEEEEEECCCCHHHHhCCC-CCCCEEEEECCEECCCcCHHHHHHHHhcCCCeEEEEEEeCcccc
Confidence            799999999999999 576 99999999999999999999999999988778999999876543

>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.89  E-value=3.7e-09  Score=83.04  Aligned_cols=65  Identities=15%  Similarity=0.242  Sum_probs=57.3

Q ss_pred             CcEEEEEEcC--CCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCCccccc
Q psy16075          2 PGIFISRLVP--GGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQRANM   67 (241)
Q Consensus         2 pGIfIs~Vvp--GSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~q~~~~   67 (241)
                      .|++|..|.+  ++||+++|+ +.||+|++|||+++...+++++..+|+..+..+.|+|.+.++..++
T Consensus        44 ~gv~V~~V~~~~~spA~~aGL-~~GD~Il~Vng~~v~~~~~~dl~~~l~~~g~~v~l~v~R~g~~~~~  110 (118)
T 2yub_A           44 TTVQVKEVNRMHISPNNRNAI-HPGDRILEINGTPVRTLRVEEVEDAIKQTSQTLQLLIEHDPVPQRL  110 (118)
T ss_dssp             CEEEEEECCTTTSCTTHHHHC-CTTCCEEEESSSBTTTSCHHHHHHHHHCCSSCEEEEEEECSSCCCC
T ss_pred             CcEEEEEecCCCCChHHHcCC-CCCCEEEEECCEECCCcCHHHHHHHHHhCCCEEEEEEEECCEEEee
Confidence            4799999999  999999997 9999999999999997777999999987744789999988776554

>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A

Probab=98.87  E-value=3.2e-09  Score=79.78  Aligned_cols=58  Identities=21%  Similarity=0.367  Sum_probs=53.1

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecC
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA   61 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~   61 (241)
                      .|++|..|.+++||++ || ++||+|++|||+++.++++.+++.+++..+..+.|+|.+.
T Consensus        43 ~gv~V~~V~~~spA~~-gL-~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~R~  100 (103)
T 1n7t_A           43 DGIFVTRVQPEGPASK-LL-QPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVRE  100 (103)
T ss_dssp             CSEECCCBSSSSTTSS-SC-CTTCEEEEETTEECSSCCHHHHHHHHHHCCSEEEEEEECC
T ss_pred             CCEEEEEECCCCchHH-CC-CCCCEEEEECCEECCCCCHHHHHHHhhcCCCeEEEEEEec
Confidence            3799999999999999 97 9999999999999999999999999987777889998874

>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A

Probab=98.87  E-value=8.6e-09  Score=79.24  Aligned_cols=62  Identities=29%  Similarity=0.437  Sum_probs=55.0

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCCc
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQ   63 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~q   63 (241)
                      .|++|..|.+++||+++|.|++||+|++|||+++.++++.++..+++..+..+.|+|.+..+
T Consensus        38 ~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~r~~~   99 (119)
T 1tp5_A           38 EGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPE   99 (119)
T ss_dssp             CCEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHHTSCSEEEEEEEECHH
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCc
Confidence            48999999999999999933999999999999999999999999998777789999987653

>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4

Probab=98.87  E-value=1.1e-08  Score=78.01  Aligned_cols=66  Identities=20%  Similarity=0.402  Sum_probs=58.0

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCCccccccccc
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQRANMSVPR   71 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~q~~~~~~~R   71 (241)
                      .|++|..|.+++||+++|+ ++||.|++|||+++.  +++++..+++. +..+.|+|.+.++...+.+..
T Consensus        35 ~gv~V~~V~~~spA~~aGl-~~GD~I~~ing~~v~--~~~~~~~~l~~-~~~v~l~v~R~g~~~~~~v~~  100 (113)
T 2pzd_A           35 HGVLIHKVILGSPAHRAGL-RPGDVILAIGEQMVQ--NAEDVYEAVRT-QSQLAVQIRRGRETLTLYVTP  100 (113)
T ss_dssp             SCEEEEEEBTTSHHHHHTC-CTTCEEEEETTEECC--SHHHHHHHHHH-CSSEEEEEEETTEEEEEEECC
T ss_pred             CCeEEEEeCCCChHHHcCC-CCCCEEEEECCEECC--CHHHHHHHHhC-CCeEEEEEEECCEEEEEEEEE
Confidence            4799999999999999997 999999999999998  78999999986 567999999988877665543

>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A

Probab=98.86  E-value=4.7e-09  Score=80.81  Aligned_cols=55  Identities=24%  Similarity=0.416  Sum_probs=48.0

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEe
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK   59 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~   59 (241)
                      .|++|..|.+++||+++|+ +.||+|++|||+++.+++++++.++++..  .+.++|.
T Consensus        35 ~g~~V~~V~~~spA~~aGL-~~GD~Il~vng~~v~~~~~~~l~~~l~~~--~l~ltV~   89 (94)
T 3kzd_A           35 RRLYVNSVKETGLASKKGL-KAGDEILEINNRAADALNSSMLKDFLSQP--SLGLLVR   89 (94)
T ss_dssp             CEEEEEEECTTSHHHHTTC-CTTCEEEEETTEEGGGCCHHHHHHHHHSS--EEEEEEE
T ss_pred             CCeEEEEECCCCHHHHcCC-CCCCEEEEECCEECCCCCHHHHHHHHhCC--eEEEEEE
Confidence            3799999999999999997 99999999999999999999999999743  4555443

>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.85  E-value=6.2e-09  Score=81.26  Aligned_cols=63  Identities=21%  Similarity=0.474  Sum_probs=55.3

Q ss_pred             CcEEEEEEcCCCHHhhhC-CCCCCCEEEEECCEEcCCCCHHHHHHHHHhCC-CcEEEEEecCCccccc
Q psy16075          2 PGIFISRLVPGGLAESTG-LLAVNDEVLEVNGILVAGKSLDQVTDMMVANS-SNLIITVKPANQRANM   67 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAG-LLqvGD~ILeINGqsV~glshdeVv~LLKsss-g~VtLtV~p~~q~~~~   67 (241)
                      .|++|..|.+++||+++| | ++||+|++|||++|.  +++++..+|+... ..+.|+|.+.++....
T Consensus        48 ~gv~V~~V~~~spA~~aG~l-~~GD~I~~ing~~v~--~~~~~~~~l~~~~g~~v~l~v~R~g~~~~~  112 (124)
T 1wh1_A           48 IGIYISEIDPNSIAAKDGRI-REGDRIIQINGIEVQ--NREEAVALLTSEENKNFSLLIARPELQLDE  112 (124)
T ss_dssp             CCEEEEEECSSSHHHHTCCC-CTTCEEEEESSCBCC--SHHHHHHHHTCSSCCSCCEEEEECSSCCCC
T ss_pred             CCEEEEEECCCCHHHHcCCC-CCCCEEEEECCEECC--CHHHHHHHHHhCCCCEEEEEEEECCEEeec
Confidence            489999999999999999 6 999999999999998  7999999998753 4689999988766554

>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A

Probab=98.85  E-value=6.6e-09  Score=79.33  Aligned_cols=65  Identities=31%  Similarity=0.609  Sum_probs=56.6

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecC-Ccccccc
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA-NQRANMS   68 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~-~q~~~~~   68 (241)
                      .|++|..|.+++||+++|+ ++||+|++|||+++..+.+.++..+++.. ..+.|+|.+. ++...+.
T Consensus        41 ~gv~V~~V~~~s~A~~aGL-~~GD~Il~vng~~v~~~~~~~~~~~~~~~-~~v~l~v~r~~g~~~~~~  106 (114)
T 1x5n_A           41 PGIFISHVKPGSLSAEVGL-EIGDQIVEVNGVDFSNLDHKEAVNVLKSS-RSLTISIVAAAGRELFMT  106 (114)
T ss_dssp             CSEEEEEECTTSTTTTTTC-CTTCEEEEETTEETTSCCTTHHHHHHHHC-SSEEEEECSSTTTHHHHS
T ss_pred             CCEEEEEECCCCHHHHcCC-CCCCEEEEECCEECCCCCHHHHHHHHhcC-CeEEEEEEcCCCCceEEE
Confidence            4899999999999999996 99999999999999998888899999865 5899999887 6655443

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}

Probab=98.84  E-value=1.1e-08  Score=84.32  Aligned_cols=63  Identities=19%  Similarity=0.303  Sum_probs=56.5

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCC--CCHHHHHHHHHhCCCc-EEEEEecCCcc
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAG--KSLDQVTDMMVANSSN-LIITVKPANQR   64 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~g--lshdeVv~LLKsssg~-VtLtV~p~~q~   64 (241)
                      .|++|..|.+++||+++|.|+.||+|++|||+++.+  +++.+++.+++...+. +.|+|.+.++.
T Consensus        45 ~g~~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~~~~~~~~~~~v~l~v~R~~~~  110 (206)
T 3r0h_A           45 TGCVITHVYPEGQVAADKRLKIFDHICDINGTPIHVGSMTTLKVHQLFHTTYEKAVTLTVFRADPP  110 (206)
T ss_dssp             SCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECCGGGSCHHHHHHHHHSCCSSEEEEEEECCSSC
T ss_pred             CCeEEEEECCCChHHhcCCCCCCCEEEEECCEEcCCCccCHHHHHHHHHhcCCCceEEEEEecccC
Confidence            489999999999999999449999999999999998  8999999999987777 99999887543

>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.84  E-value=5e-09  Score=78.41  Aligned_cols=60  Identities=33%  Similarity=0.539  Sum_probs=51.2

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCCc
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQ   63 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~q   63 (241)
                      .|++|..|.+++||+++|| ++||+|++|||+++..+.+.+++.+++. ...+.|+|.+.++
T Consensus        35 ~g~~V~~V~~~spA~~aGL-~~GD~I~~ing~~v~~~~~~~~~~~~~~-~~~v~l~v~R~g~   94 (101)
T 1uez_A           35 VGIYVSLVEPGSLAEKEGL-RVGDQILRVNDKSLARVTHAEAVKALKG-SKKLVLSVYSAGR   94 (101)
T ss_dssp             CCEEEEEECTTSHHHHHTC-CSSCCEEEETTEECSSCCHHHHHHHSSS-SSSCCEEECCCCC
T ss_pred             CCEEEEEECCCCHHHHcCC-CCCCEEEEECCEECCCcCHHHHHHhhcC-CCeEEEEEEECCc
Confidence            3799999999999999996 9999999999999999888887777753 4578888877643

>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A

Probab=98.82  E-value=1.4e-08  Score=76.56  Aligned_cols=60  Identities=28%  Similarity=0.343  Sum_probs=52.9

Q ss_pred             cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCCcc
Q psy16075          3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQR   64 (241)
Q Consensus         3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~q~   64 (241)
                      |++|..|.+++||+ +|+ ++||+|++|||+++.+..+.+...+++..+..+.|+|.+.++.
T Consensus        40 gv~V~~V~~~spA~-agl-~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~~~   99 (107)
T 2h2b_A           40 SIVISDVLKGGPAE-GQL-QENDRVAMVNGVSMDNVEHAFAVQQLRKSGKNAKITIRRKKGG   99 (107)
T ss_dssp             CEEEEEECTTSTTB-TTB-CTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEEEEEEESCC
T ss_pred             CEEEEEECCCCchh-hCC-CCCCEEEEECCEECCCccHHHHHHHhhCCCCEEEEEEEECCCC
Confidence            89999999999999 887 9999999999999998888888888876666899999876543

>3qik_A Phosphatidylinositol 3,4,5-trisphosphate-dependen exchanger 1 protein; PDZ domain, structural genomics consortium, SGC, hydrolase R; 2.29A {Homo sapiens}

Probab=98.81  E-value=1.5e-08  Score=79.56  Aligned_cols=57  Identities=23%  Similarity=0.375  Sum_probs=51.2

Q ss_pred             cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHh---CCCcEEEEEec
Q psy16075          3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVA---NSSNLIITVKP   60 (241)
Q Consensus         3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKs---ssg~VtLtV~p   60 (241)
                      +.+|..|.+++||+++|+ ++||+|++|||+++...++++++.+++.   .+..|.|+|+.
T Consensus        40 ~~~I~~V~~gSpA~~AGL-~~GD~I~~Ing~~v~~~s~~dv~~~i~~~~~~g~~v~LLV~~   99 (101)
T 3qik_A           40 AVVVKSVQRGSLAEVAGL-QVGRKIYSINEDLVFLRPFSEVESILNQSFCSRRPLRLLVAT   99 (101)
T ss_dssp             EEEEEEECTTSHHHHHTC-CTTCBEEEETTEESTTSCHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CeEEEEECCCCHHHHcCC-CCCCEEEEECCEEcCcCCHHHHHHHHHHhhccCCeEEEEEec
Confidence            578999999999999998 9999999999999977899999999987   35678888874

>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.81  E-value=7.5e-09  Score=81.12  Aligned_cols=56  Identities=23%  Similarity=0.402  Sum_probs=50.3

Q ss_pred             cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecC
Q psy16075          3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA   61 (241)
Q Consensus         3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~   61 (241)
                      |++|..|.+++||+++|| ++||+|++|||+++..++++++.++++..  .+.|+|.+.
T Consensus        45 gv~V~~V~~~spA~~aGL-~~GD~Il~Ing~~v~~~~~~~~~~~l~~~--~v~l~v~R~  100 (114)
T 2d8i_A           45 RLYVNSVKETGLASKKGL-KAGDEILEINNRAADALNSSMLKDFLSQP--SLGLLVRTY  100 (114)
T ss_dssp             EEEEEECCTTSSHHHHTC-CTTCCEEEESSCBGGGCCHHHHHHHHTSS--EEEEEEEEC
T ss_pred             CEEEEEeCCCCHHHHcCC-CCCCEEEEECCEECCCcCHHHHHHHHhCC--cEEEEEEEC
Confidence            689999999999999996 99999999999999988899999999743  778888764

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A

Probab=98.81  E-value=1.5e-08  Score=82.02  Aligned_cols=61  Identities=31%  Similarity=0.484  Sum_probs=55.1

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCC
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPAN   62 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~   62 (241)
                      .|++|..|.+++||+++|.|+.||+|++|||+++.++++.++..+++..+..+.|+|.+..
T Consensus        35 ~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~r~~   95 (196)
T 3gsl_A           35 PSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRK   95 (196)
T ss_dssp             CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTSCSEEEEEEEEEC
T ss_pred             CCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcEEEEEEecC
Confidence            4799999999999999994499999999999999999999999999877778999997654

>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens}

Probab=98.81  E-value=1.1e-08  Score=74.64  Aligned_cols=58  Identities=26%  Similarity=0.343  Sum_probs=47.4

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhC--CCcEEEEEecCC
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVAN--SSNLIITVKPAN   62 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKss--sg~VtLtV~p~~   62 (241)
                      .|++|..+ +++||+ +|+ ++||+|++|||+++.+++++++.++++..  +..+.|+|.+.+
T Consensus        27 ~~~~v~~v-~~spA~-aGl-~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~g   86 (88)
T 3bpu_A           27 GGQRVKQI-VDSPRS-RGL-KEGDLIVEVNKKNVQALTHNQVVDMLVESPKGSEVTLLVQRQT   86 (88)
T ss_dssp             SSEEEEEC-CC--CC-TTC-CTTCEEEEETTEECTTSCHHHHHHHHHTSCTTCEEEEEEEEEC
T ss_pred             CcEEEEEe-cCChhH-hCC-CCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCCEEEEEEEeCC
Confidence            36788886 999999 897 99999999999999988899999999853  346888887654

>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.81  E-value=4.1e-09  Score=79.81  Aligned_cols=62  Identities=26%  Similarity=0.447  Sum_probs=54.9

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCCc
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQ   63 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~q   63 (241)
                      .|++|..|.+++||+++|.|++||+|++|||+++.++++.++..+++.....+.|+|.+..+
T Consensus        39 ~gv~V~~V~~~s~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~~~~~~~~v~l~v~r~~~  100 (113)
T 1um7_A           39 EGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKRAGQSVTIVAQYRPE  100 (113)
T ss_dssp             CCCBCCCBCSSSHHHHTTCCCTTCEEEEESSCBCTTCCHHHHHHHHHSCCSEEEEEEECCHH
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcEEEEEEECcc
Confidence            47889999999999999933999999999999999999999999998766678999987653

>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.81  E-value=3.2e-09  Score=79.48  Aligned_cols=59  Identities=22%  Similarity=0.295  Sum_probs=53.3

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCC
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPAN   62 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~   62 (241)
                      .+++|..|.+++||+ +|| ++||+|++|||+++.++++.+++.+++..+..+.|+|.+..
T Consensus        31 ~~~~V~~V~~~spA~-agL-~~GD~Il~ing~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~   89 (96)
T 2edv_A           31 LPLTVVAVTAGGSAH-GKL-FPGDQILQMNNEPAEDLSWERAVDILREAEDSLSITVVRCT   89 (96)
T ss_dssp             SSCBCCCBCSSSSST-TTS-CTTCBEEEESSCBSTTCCHHHHHHHHHHCSSCEEEEEEECC
T ss_pred             CCeEEEEECCCCchh-hCC-CCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECC
Confidence            368899999999996 887 99999999999999999999999999987778999998764

>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.81  E-value=6.5e-09  Score=80.72  Aligned_cols=58  Identities=14%  Similarity=0.183  Sum_probs=52.4

Q ss_pred             cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCc-EEEEEecC
Q psy16075          3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSN-LIITVKPA   61 (241)
Q Consensus         3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~-VtLtV~p~   61 (241)
                      +++|..|.+++||+++|| +.||+|++|||+++.+++++++.++|+...+. +.|+|.+.
T Consensus        37 ~v~V~~V~~~spA~~aGL-~~GD~Il~InG~~v~~~~~~d~~~~i~~~~~~~v~l~V~~~   95 (111)
T 1vae_A           37 PVQVHFLDPHCSASLAGA-KEGDYIVSIQGVDCKWLTVSEVMKLLKSFGGEEVEMKVVSL   95 (111)
T ss_dssp             SCEECCCCTTSSHHHHHC-CTTCEEEEETTEECSSCCHHHHHHHHHHTTTSEECEEEECE
T ss_pred             CEEEEEECCCCHHHHcCC-CCCCEEEEECCEECCCCCHHHHHHHHHhCCCceEEEEEEec
Confidence            578999999999999997 99999999999999999999999999877664 88888764

>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.70A {Listeria monocytogenes} PDB: 2kjk_A 3i1e_A

Probab=98.79  E-value=1.7e-08  Score=76.14  Aligned_cols=63  Identities=16%  Similarity=0.258  Sum_probs=54.5

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhC--CCcEEEEEecCCcccccc
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVAN--SSNLIITVKPANQRANMS   68 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKss--sg~VtLtV~p~~q~~~~~   68 (241)
                      .|++|..|.+++||++ |+ +.||+|++|||+++.  +++++..++...  +..+.|+|.+.++..++.
T Consensus         7 ~Gv~V~~V~~~spA~~-GL-~~GD~I~~Ing~~v~--~~~dl~~~l~~~~~g~~v~l~v~R~g~~~~~~   71 (100)
T 3i18_A            7 DGVYVMSVKDDVPAAD-VL-HAGDLITEIDGNAFK--SSQEFIDYIHSKKVGDTVKINYKHGDKNEQAD   71 (100)
T ss_dssp             CCEEEEEECTTSGGGG-TC-CTTCEEEEETTBCCS--SHHHHHHHHHTSCTTCEEEEEEEETTEEEEEE
T ss_pred             CCEEEEEeCCCCchHH-CC-CCCCEEEEECCEECC--CHHHHHHHHHhCCCCCEEEEEEEECCEEEEEE
Confidence            5899999999999996 87 999999999999998  899999999864  346899999988766554

>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens}

Probab=98.78  E-value=6.7e-09  Score=89.90  Aligned_cols=63  Identities=30%  Similarity=0.539  Sum_probs=55.4

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcE-EEEEecCCccc
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNL-IITVKPANQRA   65 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~V-tLtV~p~~q~~   65 (241)
                      .|++|..|.+++||+++|| +.||+|++|||++|.++++++++.+|+..+..+ .|+|.+.++..
T Consensus        33 ~gv~V~~V~~gSpA~~aGL-~~GD~Il~VNG~~V~~~s~~dl~~~l~~~g~~v~~l~V~R~g~~~   96 (216)
T 2krg_A           33 PGQFIRSVDPDSPAEASGL-RAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKLLVVDRETDEF   96 (216)
T ss_dssp             CSCBEEEECTTSHHHHHTC-CTTCBCCEETTEECTTCCTHHHHHHHHHHCSEEEEEECCHHHHHH
T ss_pred             CCeEEEEeCCCChHHHcCC-CCCCEEEEECCEECCCCCHHHHHHHHHhcCCeEEEEEEEECCEEE
Confidence            3799999999999999996 999999999999999999999999998775567 77887766554

>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell membrane, hydrolase, membrane, protease, serine protease, transmembrane; NMR {Bacillus subtilis}

Probab=98.76  E-value=2.9e-09  Score=80.03  Aligned_cols=66  Identities=15%  Similarity=0.346  Sum_probs=56.4

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhC--CCcEEEEEecCCccccccccc
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVAN--SSNLIITVKPANQRANMSVPR   71 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKss--sg~VtLtV~p~~q~~~~~~~R   71 (241)
                      .|++|..|.+++||++ |+ ++||+|++|||+++.  +++++..+|+..  +..+.|+|.+.++..++.+..
T Consensus         1 ~Gv~V~~V~~~spA~~-GL-~~GD~I~~InG~~v~--~~~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~~   68 (91)
T 2kjp_A            1 NGIYASSVVENMPAKG-KI-EVGDKIISADGKNYQ--SAEKLIDYISSKKAGDKVTLKIEREEKEKRVTLTL   68 (91)
T ss_dssp             CCSSCCCCCCSSCCSS-CC-CSSCEEEEETTBCCS--SHHHHHHHHSSCCSSCEECEEEESSSCEECCCEEC
T ss_pred             CceEEEEECCCChHHH-cC-CCCCEEEEECCEECC--CHHHHHHHHHcCCCCCEEEEEEEECCEEEEEEEEE
Confidence            3788999999999999 96 999999999999998  789999999765  346899999988877665543

>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.76  E-value=3.3e-08  Score=74.22  Aligned_cols=59  Identities=19%  Similarity=0.249  Sum_probs=51.4

Q ss_pred             cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCC--CcEEEEEecCCcc
Q psy16075          3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANS--SNLIITVKPANQR   64 (241)
Q Consensus         3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsss--g~VtLtV~p~~q~   64 (241)
                      |++|..|.++  |+++|| ++||+|++|||+++.+++|++++++|+...  ..+.|+|.+.++.
T Consensus        33 Gv~V~~v~~~--a~~aGL-~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~g~~   93 (96)
T 1ujv_A           33 GQRVKQILDI--QGCPGL-CEGDLIVEINQQNVQNLSHTEVVDILKDCPIGSETSLIIHRGSGP   93 (96)
T ss_dssp             EEEEEEESCG--GGSTTC-CSSCEEEEETTEECSSCCHHHHHHHHHHSCTTSEEEEEEECCSSC
T ss_pred             CEEEEEEecc--cccCCC-CCCCEEEEECCEECCCCCHHHHHHHHHcCCCCCEEEEEEEECCCC
Confidence            7899999983  788887 999999999999999999999999999853  4789999887553

>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high affinity ligand, protein BIND; 1.70A {Homo sapiens}

Probab=98.75  E-value=3.5e-08  Score=75.24  Aligned_cols=65  Identities=20%  Similarity=0.450  Sum_probs=56.6

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCCcccccccc
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQRANMSVP   70 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~q~~~~~~~   70 (241)
                      .|++|..|.+++||+++|+ +.||+|++|||+++.  ++.++..+++ .+..+.|+|.+.++...+.+.
T Consensus        35 ~gv~V~~V~~~spA~~aGl-~~GD~I~~ing~~v~--~~~~~~~~l~-~g~~v~l~v~R~g~~~~~~v~   99 (112)
T 2p3w_A           35 SGIYVQEVAPNSPSQRGGI-QDGDIIVKVNGRPLV--DSSELQEAVL-TESPLLLEVRRGNDDLLFSIA   99 (112)
T ss_dssp             SSEEEEEECTTSHHHHHTC-CTTCEEEEETTEECC--SHHHHHHHHH-HCSSEEEEEEETTEEEEEEEC
T ss_pred             CCeEEEEECCCChHHHCCC-CCCCEEEEECCEECC--CHHHHHHHHh-CCCeEEEEEEECCEEEEEEEE
Confidence            4799999999999999997 999999999999998  7899999885 455789999988877666544

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}

Probab=98.74  E-value=2.5e-08  Score=82.47  Aligned_cols=62  Identities=19%  Similarity=0.364  Sum_probs=55.1

Q ss_pred             cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCCcc
Q psy16075          3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQR   64 (241)
Q Consensus         3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~q~   64 (241)
                      |++|..|.+++||+++|.|++||+|++|||+++.+++++++.++|+.....+.|+|.+.++.
T Consensus       136 g~~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~R~~~~  197 (200)
T 2qt5_A          136 PVVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQEATLLIEYDVSV  197 (200)
T ss_dssp             EEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTTCSEEEEEEEEEEEC
T ss_pred             CEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCcc
Confidence            78999999999999999349999999999999999999999999998555789999876543

>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A

Probab=98.74  E-value=4.6e-08  Score=79.18  Aligned_cols=68  Identities=24%  Similarity=0.378  Sum_probs=56.5

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCC-cEEEEEecCCcccccccc
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSS-NLIITVKPANQRANMSVP   70 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg-~VtLtV~p~~q~~~~~~~   70 (241)
                      .|++|..|.+++||+++|+ +.||+|++|||+++.+.+++.+..+++...+ .+.|+|.+..+..++.+.
T Consensus        27 ~g~~V~~v~~~spA~~aGl-~~GD~I~~ing~~v~~~~~~~~~~~~~~~~~~~v~l~vr~~~~~~~v~l~   95 (166)
T 1w9e_A           27 NGIFVQLVQANSPASLVGL-RFGDQVLQINGENCAGWSSDKAHKVLKQAFGEKITMTIRDRPFERTITMH   95 (166)
T ss_dssp             TEEEEEEECTTSHHHHTTC-CTTCEEEEETTEECTTCCHHHHHHHHHHCCSSEEEEEEECCTTCEEEEEE
T ss_pred             CCEEEEEECCCChHHHcCC-CCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEcCCCcEEEEEe
Confidence            4789999999999999996 9999999999999998877677788876665 788999665466556554

>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; NMR {Geobacillus thermodenitrificans}

Probab=98.73  E-value=1.3e-08  Score=76.24  Aligned_cols=65  Identities=12%  Similarity=0.308  Sum_probs=56.4

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhC--CCcEEEEEecCCcccccccc
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVAN--SSNLIITVKPANQRANMSVP   70 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKss--sg~VtLtV~p~~q~~~~~~~   70 (241)
                      .|++|..|.+++||++ |+ ++||+|++|||+++.  +++++..+++..  +..+.|+|.+.++..++.+.
T Consensus         5 ~Gv~V~~V~~~spA~~-GL-~~GD~Il~InG~~v~--~~~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~   71 (94)
T 2kl1_A            5 KGVYVMSVLPNMPAAG-RL-EAGDRIAAIDGQPIN--TSEQIVSYVREKQAGDRVRVTFIRDRKQHEAELV   71 (94)
T ss_dssp             CCEECCCCCTTSTTBT-TB-CTTCEEEEETTBCCC--CHHHHHHHHHHSCTTCCEEEEEEETTEEEEEEEC
T ss_pred             CcEEEEEECCCChHHh-CC-CCCCEEEEECCEECC--CHHHHHHHHHhCCCCCEEEEEEEECCEEEEEEEE
Confidence            5899999999999999 86 999999999999998  789999999875  34799999998887766543

>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR {Streptococcus pneumoniae}

Probab=98.73  E-value=3.5e-08  Score=78.52  Aligned_cols=64  Identities=16%  Similarity=0.209  Sum_probs=55.8

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhC--CCcEEEEEecCCccccccc
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVAN--SSNLIITVKPANQRANMSV   69 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKss--sg~VtLtV~p~~q~~~~~~   69 (241)
                      .|++|..|.+++||+ +|+ +.||+|++|||+++.  +++++..++...  +..+.|+|.+.++..++.+
T Consensus        57 ~g~~V~~V~~~spA~-aGL-~~GD~I~~inG~~v~--~~~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v  122 (134)
T 2l97_A           57 SGVIVRSVQSNMPAN-GHL-EKYDVITKVDDKEIA--SSTDLQSALYNHSIGDTIKITYYRNGKEETTSI  122 (134)
T ss_dssp             SCEEEEECSTTSGGG-TTS-CSSCEEEEETTEECC--CHHHHHHHHHHSSTTCEEEEEEEETTEEEEEEE
T ss_pred             CCEEEEEECCCCchH-HCC-CCCCEEEEECCEEcC--CHHHHHHHHHhCCCCCEEEEEEEECCEEEEEEE
Confidence            478999999999999 997 999999999999998  789999999775  3478999999888766654

>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein, PDZ domain, hydrolase, inner membrane, membrane, metal-binding; HET: MLY MSE; 0.98A {Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A

Probab=98.73  E-value=2.6e-08  Score=72.84  Aligned_cols=64  Identities=14%  Similarity=0.299  Sum_probs=54.6

Q ss_pred             EEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCC-cEEEEEecCCcccccccc
Q psy16075          4 IFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSS-NLIITVKPANQRANMSVP   70 (241)
Q Consensus         4 IfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg-~VtLtV~p~~q~~~~~~~   70 (241)
                      ++|..|.+++||+++|+ +.||+|++|||+++.  +++++..+++...+ .+.++|.+.++..++.+.
T Consensus         6 ~~V~~v~~~spA~~aGl-~~GD~I~~ing~~v~--~~~~~~~~l~~~~g~~v~l~v~R~g~~~~~~v~   70 (91)
T 2zpm_A            6 PVLENVQPNSAASXAGL-QAGDRIVXVDGQPLT--QWVTFVMLVRDNPGXSLALEIERQGSPLSLTLI   70 (91)
T ss_dssp             CBCSEECTTSHHHHTTC-CTTCEEEEETTEECC--CHHHHHHHHHHCTTCCEEEEEEETTEEEEEEEC
T ss_pred             eEEEEECCCChHHhcCC-CCCCEEEEECCeEcC--CHHHHHHHHhcCCCCeEEEEEEECCeEEEEEEE
Confidence            56889999999999997 999999999999998  89999999986543 689999988876665543

>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens}

Probab=98.71  E-value=4.7e-08  Score=77.56  Aligned_cols=62  Identities=13%  Similarity=0.113  Sum_probs=51.3

Q ss_pred             cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCC--CcEEEEEecCCccccc
Q psy16075          3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANS--SNLIITVKPANQRANM   67 (241)
Q Consensus         3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsss--g~VtLtV~p~~q~~~~   67 (241)
                      |.+|.+|.+  +|+.+|| ++||+|++|||++|.+++|+|++++|+...  ..|.|+|.+.+....+
T Consensus        35 g~~V~~I~~--~~~~aGL-~~GD~Il~VNG~~v~~~~h~evv~~lk~~~~G~~v~L~V~R~g~~~p~   98 (113)
T 3soe_A           35 GQKVKMILD--SQWCQGL-QKGDIIKEIYHQNVQNLTHLQVVEVLKQFPVGADVPLLILRGGPPSPT   98 (113)
T ss_dssp             EEEEEEESC--GGGSTTC-CTTCEEEEETTEECTTSCHHHHHHHHHHSCTTCEEEEEEEESSCC---
T ss_pred             CcEEEEecC--hHHhCCC-CCCCEEEEECCEECCCCCHHHHHHHHHcCCCCCEEEEEEEECCccCcc
Confidence            567889988  5778887 999999999999999999999999999763  3699999988765443

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A

Probab=98.71  E-value=3.9e-08  Score=81.43  Aligned_cols=64  Identities=20%  Similarity=0.375  Sum_probs=55.7

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCC--CcEEEEEecCCccc
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANS--SNLIITVKPANQRA   65 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsss--g~VtLtV~p~~q~~   65 (241)
                      .+++|..|.+++||+++|.|+.||+|++|||+++.+++++++..+|+...  ..+.|+|.+.++..
T Consensus        36 ~~~~V~~v~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~~~~  101 (196)
T 1p1d_A           36 SPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTLEIEFDVAES  101 (196)
T ss_dssp             CSEEEEECCTTSHHHHTSCCCSSCCEEEETTBCSTTSCHHHHHHHHHTCCSSSEEEEEEEECSCSC
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEecCCCC
Confidence            36899999999999999934999999999999999889999999998774  46899998776543

>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell membrane, membrane, metal-binding, metalloprotease, transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A

Probab=98.70  E-value=6.1e-08  Score=72.90  Aligned_cols=57  Identities=23%  Similarity=0.307  Sum_probs=50.2

Q ss_pred             cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCC--cEEEEEecCC
Q psy16075          3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSS--NLIITVKPAN   62 (241)
Q Consensus         3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg--~VtLtV~p~~   62 (241)
                      .-+|..|.+++||+++|+ +.||+|++|||+++.  +++++...|....+  .+.++|.+.+
T Consensus         3 ~p~V~~V~~~spA~~aGl-~~GD~I~~ing~~v~--~~~d~~~~l~~~~~~~~v~l~v~R~g   61 (95)
T 3id1_A            3 RPVVGEIAANSIAAEAQI-APGTELKAVDGIETP--DWDAVRLQLVDKIGDESTTITVAPFG   61 (95)
T ss_dssp             CCBEEEECTTSHHHHTTC-CTTCEEEEETTEECS--SHHHHHHHHHHTTTCSEEEEEEECTT
T ss_pred             CCEEEeeCCCCHHHHcCC-CCCCEEEEECCEECC--CHHHHHHHHHHhcCCCcEEEEEEECC
Confidence            347899999999999998 999999999999999  89999999976543  6889998876

>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5

Probab=98.70  E-value=3.2e-08  Score=72.79  Aligned_cols=63  Identities=21%  Similarity=0.253  Sum_probs=52.4

Q ss_pred             cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhC--CCcEEEEEecCCcccccc
Q psy16075          3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVAN--SSNLIITVKPANQRANMS   68 (241)
Q Consensus         3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKss--sg~VtLtV~p~~q~~~~~   68 (241)
                      |+.|..+.+++||+++|+ +.||+|++|||+++.  ++.++..++...  +..+.++|.+.++...+.
T Consensus        20 G~~V~~~~~~s~A~~aGl-~~GD~I~~ing~~v~--~~~d~~~~~~~~~~g~~v~l~v~R~g~~~~~~   84 (87)
T 2i6v_A           20 GYRVSPGKDPVLFESIGL-QDGDMAVALNGLDLT--DPNVMNTLFQSMNEMTEMSLTVERDGQQHDVY   84 (87)
T ss_dssp             EEEEEECSCHHHHHHTTC-CTTCEEEEETTEETT--CHHHHHHHHHTGGGCSEEEEEEEETTEEEEEE
T ss_pred             EEEEEeCCCCCHHHHCCC-CCCCEEEEECCEECC--CHHHHHHHHHhcCCCCEEEEEEEECCEEEEEE
Confidence            667788888888899997 999999999999998  899999988754  346889999887765443

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}

Probab=98.70  E-value=4.3e-08  Score=81.04  Aligned_cols=59  Identities=25%  Similarity=0.340  Sum_probs=53.5

Q ss_pred             cEEEEEEcCCCHHhhh-CCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCC
Q psy16075          3 GIFISRLVPGGLAEST-GLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPAN   62 (241)
Q Consensus         3 GIfIs~VvpGSpAerA-GLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~   62 (241)
                      |++|..|.+++||+++ |+ +.||+|++|||+++.++++.++..+++..+..+.|+|.+..
T Consensus        34 ~~~V~~v~~~spA~~aggl-~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~   93 (200)
T 2qt5_A           34 KPRVSNLRQGGIAARSDQL-DVGDYIKAVNGINLAKFRHDEIISLLKNVGERVVLEVEYEL   93 (200)
T ss_dssp             CSEEEEECTTSHHHHTTSC-CTTCEEEEETTEECTTSCHHHHHHHHHTCCSEEEEEEEEEC
T ss_pred             CeEEEEECCCChHHhcCCC-CCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEeccC
Confidence            6899999999999999 76 99999999999999999999999999877778999997653

>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens}

Probab=98.15  E-value=1.9e-09  Score=83.79  Aligned_cols=56  Identities=27%  Similarity=0.455  Sum_probs=50.3

Q ss_pred             cEEEEEEcCCCHHhh-hCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEe
Q psy16075          3 GIFISRLVPGGLAES-TGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK   59 (241)
Q Consensus         3 GIfIs~VvpGSpAer-AGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~   59 (241)
                      |++|..|.++|||++ +|| ++||+|++|||+++.++++++++.+++..++.+.|+|.
T Consensus        54 gv~V~~V~~~spA~~~aGL-~~GD~Il~ING~~v~~~~~~~~~~~l~~~~~~v~l~V~  110 (112)
T 2lob_A           54 PILISEIHPGQPADRCGGL-HVGDAILAVNGVNLRDTKHKEAVTILSQQRGEIEFEVV  110 (112)
Confidence            689999999999999 787 99999999999999888999999999877666777664

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A

Probab=98.65  E-value=7e-08  Score=79.88  Aligned_cols=61  Identities=18%  Similarity=0.374  Sum_probs=54.4

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCC
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPAN   62 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~   62 (241)
                      .|++|..|.+++||+++|.|++||+|++|||+++.+++++++.++|+..+..+.|+|.+.+
T Consensus       135 ~gv~V~~V~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v~l~v~R~~  195 (196)
T 1p1d_A          135 DPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQCEDLVKLKIRKDE  195 (196)
T ss_dssp             CCCEEEECCSSSHHHHTSCCCTTCEEEEETTEEGGGCCHHHHHHHHHHCTTCEEEEEECCC
T ss_pred             CCEEEEEECCCCcHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCEEEEEEEeCC
Confidence            3789999999999999993399999999999999987899999999888667999998754

>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5

Probab=98.56  E-value=1.2e-07  Score=72.00  Aligned_cols=63  Identities=21%  Similarity=0.253  Sum_probs=50.7

Q ss_pred             cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhC--CCcEEEEEecCCcccccc
Q psy16075          3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVAN--SSNLIITVKPANQRANMS   68 (241)
Q Consensus         3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKss--sg~VtLtV~p~~q~~~~~   68 (241)
                      |+.|....++++|+++|+ +.||+|++|||+++.  ++.++..++...  +..+.|+|.+.++...+.
T Consensus        38 G~~V~~~~pas~A~~aGl-~~GDvI~~ing~~v~--~~~d~~~~~~~~~~g~~v~l~v~R~g~~~~~~  102 (105)
T 2i4s_A           38 GYRVSPGKDPVLFESIGL-QDGDMAVALNGLDLT--DPNVMNTLFQSMNEMTEMSLTVERDGQQHDVY  102 (105)
T ss_dssp             EEEEEECSCTHHHHHHTC-CTTCEEEEETTEETT--STTHHHHHHHHHTTCSEEEEEEEETTEEEEEE
T ss_pred             EEEEecCCCCCHHHHcCC-CCCCEEEEECCEECC--CHHHHHHHHHhcCCCCeEEEEEEECCEEEEEE
Confidence            556677777778899997 999999999999998  778888888652  346899999888765543

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A

Probab=98.55  E-value=4.5e-08  Score=90.51  Aligned_cols=68  Identities=16%  Similarity=0.434  Sum_probs=55.9

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCC--cEEEEEecCCccccccc
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSS--NLIITVKPANQRANMSV   69 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg--~VtLtV~p~~q~~~~~~   69 (241)
                      +|++|..|.++|||+++|.|++||+|++|||+++.++++++++.+++....  .+.|+|.+.....++.+
T Consensus       232 ~g~~V~~V~~gspA~~aG~L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~~~~~~v~l~v~r~~~~~~v~l  301 (388)
T 3suz_A          232 PTVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPLATCQGIIKGLKNQTQVKLNIVSCPPVTTVLI  301 (388)
T ss_dssp             CCCBCCCCCCSSHHHHTCCCCTTCEEEEETTEECSSCCSTTHHHHTTTCTTCSCEEEEEEECCSCC----
T ss_pred             CCEEEEeeCCCCHHHHcCCCCCCCEEEEECCEEccCCCHHHHHHHHHhccCCCccccccccccccceeeE
Confidence            468999999999999999449999999999999999999999999987633  48999988766555443

>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}

Probab=98.51  E-value=2.3e-07  Score=84.50  Aligned_cols=65  Identities=17%  Similarity=0.377  Sum_probs=57.4

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhC--CCcEEEEEecCCccccccc
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVAN--SSNLIITVKPANQRANMSV   69 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKss--sg~VtLtV~p~~q~~~~~~   69 (241)
                      .|++|..|.+++||+++|| +.||+|++|||++|.  ++.++..++...  +..+.|+|.|.++..++.+
T Consensus       263 ~G~~V~~V~~~spA~~aGL-~~GDvI~~ing~~v~--~~~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v  329 (345)
T 3stj_A          263 RGAFVSEVLPGSGSAKAGV-KAGDIITSLNGKPLN--SFAELRSRIATTEPGTKVKLGLLRNGKPLEVEV  329 (345)
T ss_dssp             SSEEEEEECTTSHHHHHTC-CTTCEECEETTEECS--CHHHHHHHHHTSCTTCEEEEEEEETTEEEEEEE
T ss_pred             ceEEEEEeccCChHHHcCC-CCCCEEEEECCEECC--CHHHHHHHHHhcCCCCEEEEEEEECCEEEEEEE
Confidence            4899999999999999998 999999999999999  899999999764  3469999999988776653

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=98.49  E-value=2e-07  Score=92.19  Aligned_cols=61  Identities=31%  Similarity=0.484  Sum_probs=55.6

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCC
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPAN   62 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~   62 (241)
                      .|++|..|.+|+||+++|.|+.||+|++|||+++.+++|.+++.+|+..+..|.|+|.+.+
T Consensus        89 ~g~~V~~v~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~g~~v~l~v~R~~  149 (721)
T 2xkx_A           89 PSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRK  149 (721)
T ss_pred             CCeEEEEeCCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHhhccccccceEEEecc
Confidence            4799999999999999995599999999999999999999999999877778999998765

>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease, serine protease, serine- lysine catalytic DYAD, PDZ domain, photosynthesis; 1.80A {Scenedesmus obliquus} SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A

Probab=98.48  E-value=3.6e-07  Score=83.88  Aligned_cols=70  Identities=23%  Similarity=0.458  Sum_probs=59.9

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCC-cEEEEEecCCc---ccccccccC
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSS-NLIITVKPANQ---RANMSVPRR   72 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg-~VtLtV~p~~q---~~~~~~~R~   72 (241)
                      .+++|..|.+++||+++|+ ++||+|++|||+++.++..+++..+|+...+ .|.|+|.+.++   ..++++.|.
T Consensus        99 ~~~~V~~v~~~spA~~aGl-~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g~~~~~~~~~l~r~  172 (388)
T 1fc6_A           99 KDVVVLTPAPGGPAEKAGA-RAGDVIVTVDGTAVKGMSLYDVSDLLQGEADSQVEVVLHAPGAPSNTRTLQLTRQ  172 (388)
T ss_dssp             SCEEEEEECTTSHHHHTTC-CTTCEEEEETTEECTTCCHHHHHHHHCBSTTCEEEEEEEETTEEEEEEEEEEECB
T ss_pred             CcEEEEEeCCCChHHHcCC-CCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEeCCCCcceEEEEEEEc
Confidence            3689999999999999997 9999999999999998888999999976554 58999998876   566666654

>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A

Probab=98.47  E-value=3e-07  Score=81.94  Aligned_cols=65  Identities=23%  Similarity=0.376  Sum_probs=56.8

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhC--CCcEEEEEecCCccccccc
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVAN--SSNLIITVKPANQRANMSV   69 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKss--sg~VtLtV~p~~q~~~~~~   69 (241)
                      .|++|..|.+++||+++|| +.||+|++|||+++.  ++.++..+|+..  +..+.|+|.|.++..++.+
T Consensus       244 ~g~~V~~V~~~spA~~aGL-~~GD~I~~ing~~v~--~~~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v  310 (318)
T 1te0_A          244 QGIVVNEVSPDGPAANAGI-QVNDLIISVDNKPAI--SALETMDQVAEIRPGSVIPVVVMRDDKQLTLQV  310 (318)
T ss_dssp             CCEEEEEECTTSTTTTTCC-CTTCCEEEETTEECC--CHHHHHHHHHTSCTTCEEEEEEESSSCEEEEEE
T ss_pred             CcEEEEEeCCCChHHHCCC-CCCCEEEEECCEEcC--CHHHHHHHHHhcCCCCEEEEEEEECCEEEEEEE
Confidence            4899999999999999998 999999999999998  789999999863  3469999999887766643

>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1

Probab=98.46  E-value=4.5e-07  Score=81.38  Aligned_cols=65  Identities=20%  Similarity=0.412  Sum_probs=57.8

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCCcccccccc
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQRANMSVP   70 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~q~~~~~~~   70 (241)
                      .|++|..|.+++||+++|| +.||+|++|||+++.  +++++..+++. ...+.|+|.|.++...+.+.
T Consensus       256 ~gv~V~~V~~~spA~~aGl-~~GDvI~~ing~~v~--~~~~l~~~l~~-~~~v~l~v~R~g~~~~~~v~  320 (325)
T 1lcy_A          256 HGVLIHKVILGSPAHRAGL-RPGDVILAIGEQMVQ--NAEDVYEAVRT-QSQLAVQIRRGRETLTLYVT  320 (325)
T ss_dssp             SCEEEEEECTTSHHHHHTC-CTTCEEEEETTEECC--SHHHHHHHHTT-CSSEEEEEEETTEEEEEEEC
T ss_pred             CCeEEEEeCcCChHHHCCC-CCCCEEEEECCEEcC--CHHHHHHHHhC-CCeEEEEEEECCEEEEEEEE
Confidence            3899999999999999998 999999999999998  89999999975 46899999999887776543

>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A

Probab=98.43  E-value=5e-07  Score=84.50  Aligned_cols=63  Identities=24%  Similarity=0.377  Sum_probs=57.3

Q ss_pred             cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCCcccccc
Q psy16075          3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQRANMS   68 (241)
Q Consensus         3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~q~~~~~   68 (241)
                      |++|..|.+++||+++|| +.||+|++|||+++.  +++++.++|+...+.+.|+|.+.++...+.
T Consensus       364 gv~V~~V~~~spA~~aGL-~~GD~I~~vng~~v~--~~~~~~~~l~~~~~~v~l~v~R~g~~~~~~  426 (436)
T 4a8c_A          364 GIKIDEVVKGSPAAQAGL-QKDDVIIGVNRDRVN--SIAEMRKVLAAKPAIIALQIVRGNESIYLL  426 (436)
T ss_pred             CEEEEEeCCCCHHHHcCC-CCCCEEEEECCEECC--CHHHHHHHHHhCCCeEEEEEEECCEEEEEE
Confidence            799999999999999997 999999999999998  899999999886678999999988776654

>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: b.36.1.6

Probab=98.40  E-value=8.3e-07  Score=70.46  Aligned_cols=61  Identities=20%  Similarity=0.291  Sum_probs=51.7

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhC--CCcEEEEEecCCcccccc
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVAN--SSNLIITVKPANQRANMS   68 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKss--sg~VtLtV~p~~q~~~~~   68 (241)
                      .|++|..|.+++||+++ + +.||+|++|||+++.  +++++..+++..  +..+.|+| +.++ ..++
T Consensus        25 ~gv~V~~V~~~spA~~a-L-~~GD~Il~InG~~v~--~~~dl~~~l~~~~~g~~v~l~V-R~g~-~~v~   87 (125)
T 2hga_A           25 DGVQIDSVVPGSPASKV-L-TPGLVIESINGMPTS--NLTTYSAALKTISVGEVINITT-DQGT-FHLK   87 (125)
T ss_dssp             CCEEEEEECSSSGGGGT-S-CTTCEEEEETTEECS--SHHHHHHHHTTCCTTCEEEEEE-TTEE-EEEE
T ss_pred             CceEEEEECCCChHHHh-c-CCCCEEEEECCEEcC--CHHHHHHHHHhcCCCCEEEEEE-ECCE-EEEE
Confidence            48999999999999999 5 999999999999998  899999999742  34688999 8776 5444

>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A

Probab=98.39  E-value=7.3e-07  Score=79.37  Aligned_cols=64  Identities=19%  Similarity=0.281  Sum_probs=55.2

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhC--CCcEEEEEec-CCcccccc
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVAN--SSNLIITVKP-ANQRANMS   68 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKss--sg~VtLtV~p-~~q~~~~~   68 (241)
                      .|++|..|.+++||+++|| +.||+|++|||+++.  ++.++..++...  +..+.|+|.| .++..++.
T Consensus       242 ~g~~V~~v~~~spA~~aGl-~~GD~I~~ing~~v~--~~~~l~~~l~~~~~g~~v~l~v~R~~g~~~~~~  308 (324)
T 1y8t_A          242 LGAKIVEVVAGGAAANAGV-PKGVVVTKVDDRPIN--SADALVAAVRSKAPGATVALTFQDPSGGSRTVQ  308 (324)
T ss_dssp             SSEEEEEECTTSTTTTTTC-CTTCEEEEETTEECC--SHHHHHHHHHTSCTTCEEEEEEECSSCCEEEEE
T ss_pred             CceEEEEECCCChHHHcCC-CCCCEEEEECCEECC--CHHHHHHHHHhcCCCCEEEEEEEECCCCEEEEE
Confidence            4789999999999999997 999999999999999  889999999753  3468999998 77765554

>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A

Probab=98.36  E-value=7.6e-07  Score=83.92  Aligned_cols=63  Identities=11%  Similarity=0.181  Sum_probs=56.5

Q ss_pred             cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCCcccccc
Q psy16075          3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQRANMS   68 (241)
Q Consensus         3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~q~~~~~   68 (241)
                      |++|..|.+++||+++|| ++||+|++|||+++.  +++++.++++.....+.|+|.+.++...+.
T Consensus       387 Gv~V~~V~~gspA~~aGL-~~GD~I~~Vng~~v~--~~~~~~~~l~~~~~~v~l~v~R~g~~~~v~  449 (451)
T 3pv2_A          387 GVQVVGASENSAGWRAGI-RPGDIIISANKKPVT--DVKSLQTIAQEKKKELLVQVLRGPGSMYLL  449 (451)
T ss_dssp             EEEEEEECTTSHHHHHTC-CTTCEEEEETTEECC--SHHHHHHHTTSSCSCEEEEEEETTEEEEEE
T ss_pred             ceEEEEECCCCHHHHcCC-CCCCEEEEECCEECC--CHHHHHHHHhcCCCeEEEEEEECCEEEEEE
Confidence            789999999999999997 999999999999998  899999999876667999999988776554

>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}

Probab=98.36  E-value=5.2e-07  Score=81.66  Aligned_cols=65  Identities=22%  Similarity=0.377  Sum_probs=56.5

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCC-----------CCEEEEECCEEcCCCCHHHHHHHHHhCC--CcEEEEEecCCcccccc
Q psy16075          2 PGIFISRLVPGGLAESTGLLAV-----------NDEVLEVNGILVAGKSLDQVTDMMVANS--SNLIITVKPANQRANMS   68 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqv-----------GD~ILeINGqsV~glshdeVv~LLKsss--g~VtLtV~p~~q~~~~~   68 (241)
                      .|++|..|.+++||+++|+ +.           ||+|++|||++|.  +++++..+|....  ..+.|+|.|.++..++.
T Consensus       251 ~Gv~V~~V~~~spA~~AGl-~~~~~~~~~~l~~GDvI~~ing~~v~--~~~dl~~~l~~~~~g~~v~l~v~R~g~~~~~~  327 (348)
T 3qo6_A          251 SGVLVLDAPPSGPAGKAGL-QSTKRDGYGRLVLGDIITSVNGTKVS--NGSDLYRILDQCKVGDEVTVEVLRGDHKEKIS  327 (348)
T ss_dssp             SSEEEEECCSSSHHHHHTC-CCCEECSSSCEECCCEECEETTBCCS--SSHHHHHHHTTCCTTCEEEEEEECSSSEEEEE
T ss_pred             ceEEEEEecCCChHHHcCC-ccccccccCCCCCCCEEEEECCEEeC--CHHHHHHHHHhCCCcCEEEEEEEECCEEEEEE
Confidence            5899999999999999998 88           9999999999999  7899999996543  46999999998876654


Q ss_pred             c
Q psy16075         69 V   69 (241)
Q Consensus        69 ~   69 (241)
                      +
T Consensus       328 v  328 (348)
T 3qo6_A          328 V  328 (348)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A

Probab=98.30  E-value=1.9e-06  Score=72.71  Aligned_cols=58  Identities=17%  Similarity=0.305  Sum_probs=45.8

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCC-CEEEEECCEEcCCCCHHHHH-HHHHhC-CCcEEEEEecCC
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVN-DEVLEVNGILVAGKSLDQVT-DMMVAN-SSNLIITVKPAN   62 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvG-D~ILeINGqsV~glshdeVv-~LLKss-sg~VtLtV~p~~   62 (241)
                      .|++|..|.++|||+++|+ +.| |+|++|||+++...  .++. .+++.. +..+.|+|.+..
T Consensus        16 ~G~~V~~V~~~SpA~~AGL-~~G~D~I~~ing~~v~~~--~~~~~~~~~~~~g~~v~l~v~R~~   76 (209)
T 3rle_A           16 EGYHVLRVQENSPGHRAGL-EPFFDFIVSINGSRLNKD--NDTLKDLLKANVEKPVKMLIYSSK   76 (209)
T ss_dssp             EEEEEEEECTTSHHHHTTC-CTTTEEEEEETTEECCSS--SSHHHHHHHHTTTSCEEEEEEETT
T ss_pred             CEEEEEEECCCCHHHHCCC-CcCCeEEEEECCEECcCH--HHHHHHHHhcCCCCEEEEEEEecC
Confidence            3799999999999999997 998 99999999999844  3333 344433 347999998754

>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A

Probab=98.30  E-value=1.7e-06  Score=81.58  Aligned_cols=64  Identities=25%  Similarity=0.361  Sum_probs=56.2

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhC--CCcEEEEEecCCcccccc
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVAN--SSNLIITVKPANQRANMS   68 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKss--sg~VtLtV~p~~q~~~~~   68 (241)
                      .|++|..|.+++||+++|| +.||+|++|||++|.  ++.++..++...  +..+.|+|.+.++..++.
T Consensus       282 ~G~~V~~V~~~spA~~aGL-~~GDvI~~vnG~~v~--~~~~l~~~l~~~~~g~~v~l~V~R~g~~~~~~  347 (451)
T 3pv2_A          282 QGALVSQVNPNSPAELAGL-KAGDIITQINDTKIT--QATQVKTTISLLRVGSTVKIIVERDNKPLTLS  347 (451)
T ss_dssp             CCEEEEEECTTSHHHHHTC-CTTCEEEEETTEECC--SHHHHHHHHHTSCTTCEEEEEEEETTEEEEEE
T ss_pred             ceEEEEecCCCChHHHcCC-CCCCEEEEECCEEcC--CHHHHHHHHHhcCCCCEEEEEEEECCEEEEEE
Confidence            5899999999999999997 999999999999999  889999999753  346899999988876654

>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A

Probab=98.30  E-value=1.5e-06  Score=81.21  Aligned_cols=65  Identities=17%  Similarity=0.377  Sum_probs=56.3

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhC--CCcEEEEEecCCccccccc
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVAN--SSNLIITVKPANQRANMSV   69 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKss--sg~VtLtV~p~~q~~~~~~   69 (241)
                      .|++|..|.+++||+++|| +.||+|++|||+++.  ++.++..++...  +..+.|+|.+.++..++.+
T Consensus       263 ~G~~V~~V~~~spA~~aGL-~~GD~I~~vnG~~v~--~~~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v  329 (436)
T 4a8c_A          263 RGAFVSEVLPGSGSAKAGV-KAGDIITSLNGKPLN--SFAELRSRIATTEPGTKVKLGLLRNGKPLEVEV  329 (436)
T ss_pred             cceEEEEECCCChHHHCCC-CCCCEEEEECCEECC--CHHHHHHHHHhcCCCCEEEEEEEECCEEEEEEE
Confidence            4899999999999999997 999999999999999  788999888754  3469999999887766643

>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A

Probab=98.22  E-value=1.6e-06  Score=73.22  Aligned_cols=57  Identities=11%  Similarity=0.179  Sum_probs=49.6

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCC-CCEEEEECCEEcCCCCHHHHHHHHHhCCC-cEEEEEecCC
Q psy16075          2 PGIFISRLVPGGLAESTGLLAV-NDEVLEVNGILVAGKSLDQVTDMMVANSS-NLIITVKPAN   62 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqv-GD~ILeINGqsV~glshdeVv~LLKsssg-~VtLtV~p~~   62 (241)
                      .|++|..|.+++||+++|+ +. ||+|++|||+ +.  +++++.++++...+ .+.|+|.+.+
T Consensus       112 ~Gv~V~~V~~~spA~~aGl-~~~GD~I~~ing~-v~--~~~~l~~~l~~~~g~~v~l~v~r~~  170 (209)
T 3rle_A          112 NVWHVLEVESNSPAALAGL-RPHSDYIIGADTV-MN--ESEDLFSLIETHEAKPLKLYVYNTD  170 (209)
T ss_dssp             SCEEEEEECTTSHHHHHTC-CTTTEEEEEESSC-CC--SSSCHHHHHHHTTTSCEEEEEEETT
T ss_pred             cceEEEEeCCCChHHHCCC-CCCCCEEEECCCE-eC--CHHHHHHHHHhCCCCeEEEEEEECC
Confidence            4789999999999999997 99 9999999998 76  78899999987644 6899997754

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A

Probab=98.19  E-value=2e-07  Score=86.21  Aligned_cols=61  Identities=23%  Similarity=0.424  Sum_probs=0.0

Q ss_pred             EEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCCccc
Q psy16075          4 IFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQRA   65 (241)
Q Consensus         4 IfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~q~~   65 (241)
                      .+|..|.++++|+++|| ++||+|++|||++|.+.++++++++|+...+.+.|+|.+.....
T Consensus       317 g~I~~V~~gs~A~~aGL-~~GD~Il~VNg~~v~~~s~~~~~~~l~~~~~~v~L~V~p~~~~~  377 (388)
T 3suz_A          317 GIICSLMRGGIAERGGV-RVGHRIIEINGQSVVATAHEKIVQALSNSVGEIHMKTMPAAMFR  377 (388)
T ss_dssp             --------------------------------------------------------------
T ss_pred             CEEEEeecCCHHHHcCC-CCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEeccccc
Confidence            37889999999999995 99999999999999999999999999988788999998765443

>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A

Probab=98.18  E-value=2.2e-07  Score=83.38  Aligned_cols=64  Identities=31%  Similarity=0.524  Sum_probs=0.0

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCCccccccc
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQRANMSV   69 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~q~~~~~~   69 (241)
                      .|++|..|.+++||+++|| +.||+|++|||+++.  +++++..+++. +..+.|+|.|.++..++.+
T Consensus       254 ~g~~V~~v~~~spA~~aGl-~~GD~I~~ing~~v~--~~~~~~~~l~~-~~~v~l~v~R~g~~~~~~v  317 (332)
T 3num_A          254 SGAYIIEVIPDTPAEAGGL-KENDVIISINGQSVV--SANDVSDVIKR-ESTLNMVVRRGNEDIMITV  317 (332)
T ss_dssp             --------------------------------------------------------------------
T ss_pred             CceEEEEeccCCChHHcCC-CCCCEEEEECCEECC--CHHHHHHHHhC-CCeEEEEEEECCEEEEEEE
Confidence            3789999999999999997 999999999999998  78899999874 5578999998887766543

>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A

Probab=98.12  E-value=9.8e-06  Score=65.38  Aligned_cols=55  Identities=27%  Similarity=0.434  Sum_probs=49.1

Q ss_pred             EEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEec
Q psy16075          5 FISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKP   60 (241)
Q Consensus         5 fIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p   60 (241)
                      +|..+.+++||+++|+ +.||.|++|||+++....++++...++..+..+.+.|.+
T Consensus       110 ~v~~v~~~s~a~~aGl-~~GD~I~~ing~~v~~~~~~~v~~~v~r~g~~~~l~v~~  164 (166)
T 1w9e_A          110 KITSIVKDSSAARNGL-LTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMP  164 (166)
T ss_dssp             EEEEECTTSHHHHTTC-CSSEEEEEETTEECTTCCHHHHHHHHHHSCSEEEEEEEE
T ss_pred             EEEEEccCCHHHHcCC-CCCCEEEEECCEECCCCChHHHHHHHhhCCCEEEEEEEE
Confidence            7889999999999996 999999999999999999999988887777777777765

>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}

Probab=98.07  E-value=4.4e-06  Score=81.75  Aligned_cols=64  Identities=11%  Similarity=0.230  Sum_probs=53.3

Q ss_pred             cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhC--CCcEEEEEecCCcccccccc
Q psy16075          3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVAN--SSNLIITVKPANQRANMSVP   70 (241)
Q Consensus         3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKss--sg~VtLtV~p~~q~~~~~~~   70 (241)
                      |++|..|.++|||+++|+ ++||+|++|||++|.   .+++.++|+..  +..|.|+|.+.++..++.+.
T Consensus       497 gv~V~~V~~~spA~~AGL-~~GD~I~aInG~~v~---~~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~  562 (597)
T 4fgm_A          497 GLDVLNVYHDESAYHAGL-SAGDKIIAIDHLQAT---EQSVKRILERYIPGDTVTIHAFRRDELMTLELT  562 (597)
T ss_dssp             EEEEEEECTTSHHHHHTC-CTTCEEEEETTEECC---TTTHHHHHTTCCTTCEEEEEEEETTEEEEEEEE
T ss_pred             eEEEEEeCCCChHHHCCC-CCCCEEEEECCEECC---HHHHHHHHHhcCCCCEEEEEEEECCEEEEEEEE
Confidence            689999999999999998 999999999999995   45666777643  34699999999887776543

>3k50_A Putative S41 protease; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343}

Probab=97.93  E-value=6.6e-06  Score=77.15  Aligned_cols=56  Identities=27%  Similarity=0.379  Sum_probs=46.7

Q ss_pred             EEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCCc
Q psy16075          4 IFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQ   63 (241)
Q Consensus         4 IfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~q   63 (241)
                      ++|..|.+++||+++|+ +.||+|++|||++|.+..   +..+++..+..|.|+|.+.++
T Consensus        92 ~~V~~V~~gsPA~~AGL-~~GD~I~~InG~~v~~~~---~~~~l~~~g~~v~l~v~R~g~  147 (403)
T 3k50_A           92 ALISYVVPGSPAEEAGL-QRGHWIMMMNGDYITKKV---ESELLQGSTRQLQIGVYKEVV  147 (403)
T ss_dssp             EEEEEECTTSHHHHTTC-CTTCEEEEETTBCBCTTT---GGGGTSCSCEEEEEEEEEEEC
T ss_pred             EEEEEeCCCChHHHcCC-CCCCEEEEECCEEccchh---HHHHhhCCCCEEEEEEEeCCc
Confidence            78999999999999997 999999999999999664   666777633368888887654

>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A

Probab=97.93  E-value=1.3e-06  Score=82.39  Aligned_cols=64  Identities=16%  Similarity=0.321  Sum_probs=0.0

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCCcccccc
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQRANMS   68 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~q~~~~~   68 (241)
                      .|++|..|.+++||+++|+ +.||+|++|||+++.  +++++.++|+...+.+.|+|.+.++...+.
T Consensus       383 ~gv~V~~V~~gspA~~aGL-~~GDiI~~vng~~v~--~~~~l~~~l~~~~~~v~l~v~R~g~~~~~~  446 (448)
T 1ky9_A          383 QGVVVNNVKTGTPAAQIGL-KKGDVIIGANQQAVK--NIAELRKVLDSKPSVLALNIQRGDSTIYLL  446 (448)
T ss_dssp             -------------------------------------------------------------------
T ss_pred             CeEEEEEecCCCHHHHcCC-CCCCEEEEECCEECC--CHHHHHHHHHcCCCeEEEEEEECCEEEEEE
Confidence            3688999999999999997 999999999999998  789999999876667888998887765543

>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A

Probab=97.89  E-value=3.6e-06  Score=79.26  Aligned_cols=66  Identities=20%  Similarity=0.389  Sum_probs=56.1

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhC--CCcEEEEEecCCcccccccc
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVAN--SSNLIITVKPANQRANMSVP   70 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKss--sg~VtLtV~p~~q~~~~~~~   70 (241)
                      .|++|..|.+++||+++|| +.||+|++|||+++.  ++.++..++...  +..+.|+|.+.++..++.+.
T Consensus       286 ~G~~V~~V~~gspA~~AGL-~~GDvI~~inG~~v~--~~~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~  353 (448)
T 1ky9_A          286 RGAFVSQVLPNSSAAKAGI-KAGDVITSLNGKPIS--SFAALRAQVGTMPVGSKLTLGLLRDGKQVNVNLE  353 (448)
T ss_dssp             CSEECCCCTTCSSSTTTTC-CTTCEECBSSSSBCC--SSHHHHHHTTSSBTTCCCEEEEESSSCEEECCCC
T ss_pred             CceEEEEeccCCHHHHcCC-CCCCEEEEECCEEcC--CHHHHHHHHHhcCCCCEEEEEEEECCEEEEEEEE
Confidence            3899999999999999998 999999999999999  778998888643  45799999998877665543

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=97.64  E-value=8.2e-05  Score=74.12  Aligned_cols=65  Identities=9%  Similarity=0.169  Sum_probs=52.8

Q ss_pred             cEEEEEEcCC--------CHHhhhC--CCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCC-cEEEEEecCC-cccccccc
Q psy16075          3 GIFISRLVPG--------GLAESTG--LLAVNDEVLEVNGILVAGKSLDQVTDMMVANSS-NLIITVKPAN-QRANMSVP   70 (241)
Q Consensus         3 GIfIs~VvpG--------SpAerAG--LLqvGD~ILeINGqsV~glshdeVv~LLKsssg-~VtLtV~p~~-q~~~~~~~   70 (241)
                      +++|..|.++        +||+++|  + + ||+|++|||+++.++.  ++..+|++..+ .|.|+|.+.+ +..++.+.
T Consensus       749 ~~~v~~v~~~~~~~~~~~spa~~ag~~l-~-GD~I~~i~g~~~~~~~--~~~~~~~~~~g~~v~l~v~r~~~~~~~~~~~  824 (1045)
T 1k32_A          749 HYVVAKAYAGDYSNEGEKSPIFEYGIDP-T-GYLIEDIDGETVGAGS--NIYRVLSEKAGTSARIRLSGKGGDKRDLMID  824 (1045)
T ss_dssp             EEEEEEECBSCTTSTTCBCGGGGGTCCC-T-TCEEEEETTEECBTTB--CHHHHHHTTTTSEEEEEEECSSSCEEEEEEE
T ss_pred             EEEEEEecCCCcccccCCChHHHCCCCc-C-CCEEEEECCEEccchh--hHHHhhcCCCCCEEEEEEECCCCceEEEEEE
Confidence            6789999998        9999999  6 8 9999999999999654  88899987665 5899999876 34455554


Q ss_pred             c
Q psy16075         71 R   71 (241)
Q Consensus        71 R   71 (241)
                      +
T Consensus       825 ~  825 (1045)
T 1k32_A          825 I  825 (1045)
T ss_dssp             C
T ss_pred             E
Confidence            3

>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}

Probab=97.31  E-value=0.00028  Score=68.71  Aligned_cols=66  Identities=15%  Similarity=0.228  Sum_probs=50.3

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCC--------HHHHHHHHHhC--CCcEEEEEecCCccccccc
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKS--------LDQVTDMMVAN--SSNLIITVKPANQRANMSV   69 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~gls--------hdeVv~LLKss--sg~VtLtV~p~~q~~~~~~   69 (241)
                      .|++|..|.+++||+++ | +.||.|++|||+.|....        ..++..++...  +..|.|+|.|.+++.++.+
T Consensus       277 ~Gv~V~~V~~~spA~~a-l-~~GDvI~~idg~~V~~~g~~~~~~~~~~~l~~~v~~~~~Gd~v~l~v~R~Gk~~~v~V  352 (539)
T 4fln_A          277 EGVLVRRVEPTSDASKV-L-KEGDVIVSFDDLHVGCEGTVPFRSSERIAFRYLISQKFAGDIAEIGIIRAGEHKKVQV  352 (539)
T ss_dssp             BCEEEEEECTTSGGGGT-C-CTTCEEEEETTEECBSSSEEECSTTCEEETHHHHHTSCTTCEEEEEEEETTEEEEEEE
T ss_pred             CceeeecccCCChHHhC-c-cCCCEEEEECCEEeCcCCeeccccchhHHHHHHHHcCCCCCEEEEEEEECCEEEEEEE
Confidence            38999999999999875 5 999999999999996321        11234455433  4479999999998777754

>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}

Probab=96.70  E-value=0.0039  Score=60.76  Aligned_cols=54  Identities=15%  Similarity=0.295  Sum_probs=48.3

Q ss_pred             cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCc-EEEEEe
Q psy16075          3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSN-LIITVK   59 (241)
Q Consensus         3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~-VtLtV~   59 (241)
                      |++|+.|.++++|...|+ +.||+|++|||++|.  +..++.++|+++++. +.|.+.
T Consensus       416 gVvvs~V~~~s~a~~~g~-~~gdiI~~vNg~~V~--s~~~l~~~l~~~k~~~l~~~~~  470 (539)
T 4fln_A          416 IVILSQVLANEVNIGYED-MNNQQVLKFNGIPIR--NIHHLAHLIDMCKDKYLVFEFE  470 (539)
T ss_dssp             CEEEEEECCCGGGTTCSS-CCSEEEEEETTEECC--SHHHHHHHHHTCCSSEEEEEET
T ss_pred             EEEEEEecCCchhhhcCC-CCCCEEEeECCEEcC--CHHHHHHHHHHcCCCeEEEEEC
Confidence            799999999999999998 899999999999999  999999999988775 555543

>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*

Probab=90.19  E-value=0.079  Score=47.48  Aligned_cols=45  Identities=18%  Similarity=0.050  Sum_probs=31.7

Q ss_pred             hhhhhcccccceeecccCCCCcccceeeeEEEEEeecccccchhccc
Q psy16075        104 DEVVDLTGITLEICRIEPSTNSDIFERTKIVFVFTMLSKTTKWMSDM  150 (241)
Q Consensus       104 ~~~~~~~~~~~~~~~~~p~t~s~~~~~~~i~~~~~~~~~~~~~~~~~  150 (241)
                      -.|++++.+.-..++.+||- ...|.+++|+.+..+.+ .+|||+..
T Consensus         6 ~yvRa~fdY~~~~D~~~P~~-gL~F~~gDiL~V~~~~d-~~wWqA~~   50 (292)
T 3tvt_A            6 LYVRALFDYDPNRDDGLPSR-GLPFKHGDILHVTNASD-DEWWQARR   50 (292)
T ss_dssp             CEEEECSCBCC----------CCCBCTTCEEEEEECCS-SSEEEECC
T ss_pred             EEEEEeccCCCCCCCCCCCC-cCCcCCCCEEEEeecCC-CCeEEEEE
Confidence            46788999888889999996 59999999999999987 79999975

>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage dependent calcium channel, transport protein; 1.95A {Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A

Probab=85.71  E-value=0.31  Score=45.18  Aligned_cols=45  Identities=13%  Similarity=0.131  Sum_probs=38.8

Q ss_pred             hhhhcccccceeecccCC-CCcccceeeeEEEEEeecccccchhccc
Q psy16075        105 EVVDLTGITLEICRIEPS-TNSDIFERTKIVFVFTMLSKTTKWMSDM  150 (241)
Q Consensus       105 ~~~~~~~~~~~~~~~~p~-t~s~~~~~~~i~~~~~~~~~~~~~~~~~  150 (241)
                      .|+++..+....++-+|| +....|.+++|+.+....+ .+||++..
T Consensus        40 ~vrAlfdY~~~~d~d~P~~e~~LsF~~GDiL~V~~~~d-~~WWqar~   85 (337)
T 4dey_A           40 AVRTNVSYSAAHEDDVPVPGMAISFEAKDFLHVKEKFN-NDWWIGRL   85 (337)
T ss_dssp             EEEESSCBCCCGGGCCSSTTCBCCBCTTCEEEEEEECS-SSEEEEEE
T ss_pred             EEEEccccCCCCCCCCCcccccccccCCCEEEEEecCC-CCeEEEEE
Confidence            566777777888888899 7899999999999999876 89999987

>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2

Probab=82.66  E-value=0.067  Score=40.88  Aligned_cols=32  Identities=28%  Similarity=0.353  Sum_probs=26.6

Q ss_pred             eeecccCCCCcccceeeeEEEEEeecccccchhcccccchhhhhhhhh
Q psy16075        115 EICRIEPSTNSDIFERTKIVFVFTMLSKTTKWMSDMNGHALRILARES  162 (241)
Q Consensus       115 ~~~~~~p~t~s~~~~~~~i~~~~~~~~~~~~~~~~~~~~~lrl~~~~~  162 (241)
                      +.-|+.|++|+++|.++..       +         +.|+|||++|++
T Consensus        55 ~dGDLlpInnDdnl~~Al~-------~---------a~plLRl~Iqrk   86 (86)
T 1wmh_B           55 AHGDLLPLTNDDSLHRALA-------S---------GPPPLRLLVQKR   86 (86)
T ss_dssp             TTSCEEECCSHHHHHHHTT-------S---------SSSCEEEEEECC
T ss_pred             CCCCEeeecCHHHHHHHHH-------h---------CCCcEEEEEEcC
Confidence            3578999999999998855       4         678999999874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	241
d1rzxa_	98	b.36.1.1 (A:) GTPase-binding domain of the cell po	2e-14
d1kwaa_	88	b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [Ta	3e-12
d1ujda_	117	b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human	5e-12
d1va8a1	100	b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {M	7e-12
d1n7ea_	95	b.36.1.1 (A:) Glutamate receptor-interacting prote	3e-11
d2fcfa1	96	b.36.1.1 (A:1148-1243) Multiple PDZ domain protein	3e-11
d1x45a1	85	b.36.1.1 (A:8-92) Amyloid beta A4 precursor protei	4e-11
d1ihja_	94	b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanoga	4e-11
d1x5ra1	99	b.36.1.1 (A:8-106) Glutamate receptor interacting	7e-11
d1qava_	90	b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [Ta	9e-11
d1rgra_	93	b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus	2e-10
d1v62a_	117	b.36.1.1 (A:) Glutamate receptor interacting prote	2e-10
d1wf8a1	94	b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens	3e-10
d1uewa_	114	b.36.1.1 (A:) Membrane associated guanylate kinase	3e-10
d1v5qa_	122	b.36.1.1 (A:) Glutamate receptor interacting prote	1e-09
d2csja1	104	b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tj	1e-09
d1g9oa_	91	b.36.1.1 (A:) Na+/H+ exchanger regulatory factor,	2e-09
d1t2ma1	92	b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [Ta	4e-09
d2fnea1	88	b.36.1.1 (A:1955-2042) Multiple PDZ domain protein	4e-09
d2cssa1	108	b.36.1.1 (A:8-115) Regulating synaptic membrane ex	5e-09
d1um1a_	110	b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human	5e-09
d1wi4a1	96	b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mou	6e-09
d1v6ba_	118	b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxI	1e-08
d1uepa_	103	b.36.1.1 (A:) Membrane associated guanylate kinase	1e-08
d1y7na1	79	b.36.1.1 (A:12-90) Amyloid beta A4 precursor prote	1e-08
d1ozia_	99	b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus muscu	1e-08
d1p1da2	99	b.36.1.1 (A:115-213) Glutamate receptor interactin	2e-08
d1q3oa_	104	b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norv	2e-08
d1tp5a1	102	b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat	2e-08
d1wfva_	103	b.36.1.1 (A:) Membrane associated guanylate kinase	2e-08
d2f5ya1	77	b.36.1.1 (A:19-95) Regulator of G-protein signalin	2e-08
d1x6da1	107	b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sap	3e-08
d1whaa_	105	b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sap	4e-08
d1uf1a_	128	b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapien	4e-08
d1ueqa_	123	b.36.1.1 (A:) Membrane associated guanylate kinase	4e-08
d2cs5a1	106	b.36.1.1 (A:8-113) Tyrosine-protein phosphatase no	5e-08
d1x5na1	101	b.36.1.1 (A:8-108) Harmonin {Human (Homo sapiens)	6e-08
d1uhpa_	107	b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human	6e-08
d1ufxa_	103	b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapien	6e-08
d2h3la1	103	b.36.1.1 (A:1310-1412) Erbin {Human (Homo sapiens)	8e-08
d1m5za_	91	b.36.1.1 (A:) Glutamate receptor interacting prote	8e-08
d1w9ea1	85	b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapie	1e-07
d1rgwa_	85	b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo	1e-07
d2fe5a1	92	b.36.1.1 (A:223-314) Synapse-associated protein 10	1e-07
d1ujua_	111	b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sap	2e-07
d1x5qa1	97	b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Hom	2e-07
d2f0aa1	92	b.36.1.1 (A:251-342) Segment polarity protein dish	5e-07
d1ueza_	101	b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapien	6e-07
d1wf7a_	103	b.36.1.1 (A:) Enigma homolog ENH {Mouse (Mus muscu	8e-07
d1wifa_	126	b.36.1.1 (A:) hypothetical PDZ domain containing p	9e-07
d1i16a_	130	b.36.1.2 (A:) Interleukin 16 {Human (Homo sapiens)	1e-06
d1vb7a_	94	b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus	2e-06
d1wi2a_	104	b.36.1.1 (A:) PDZ domain containing protein 11, Pd	2e-06
d1qaua_	112	b.36.1.1 (A:) Neuronal nitric oxide synthase, NNOS	2e-06
d1uita_	117	b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Huma	3e-06
d1wg6a_	127	b.36.1.1 (A:) Partitioning-defective 3-like protei	3e-06
d1wh1a_	124	b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human	5e-06
d1v5la_	103	b.36.1.1 (A:) Alpha-actinin-2 associated LIM prote	2e-05
d1r6ja_	82	b.36.1.1 (A:) Syntenin 1 {Human (Homo sapiens) [Ta	6e-05
d1vaea_	111	b.36.1.1 (A:) Rhophilin-2 {Mouse (Mus musculus) [T	3e-04
d1ujva_	96	b.36.1.1 (A:) Membrane associated guanylate kinase	0.003

>d1rzxa_ b.36.1.1 (A:) GTPase-binding domain of the cell polarity protein par6 (Par-6B) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 98

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: GTPase-binding domain of the cell polarity protein par6 (Par-6B)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 64.6 bits (157), Expect = 2e-14
 Identities = 58/61 (95%), Positives = 60/61 (98%)

Query: 2  PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61
          PGIFISRLVPGGLAESTGLLAVNDEV+EVNGI VAGK+LDQVTDMMVANSSNLIITVKPA
Sbjct: 38 PGIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQVTDMMVANSSNLIITVKPA 97

Query: 62 N 62
          N
Sbjct: 98 N 98

>d1kwaa_ b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Cask/Lin-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.7 bits (142), Expect = 3e-12
 Identities = 17/61 (27%), Positives = 35/61 (57%)

Query: 3  GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPAN 62
             ++R++ GG+    G L V DE+ E+NGI VA ++++Q+  M+     ++   + P+ 
Sbjct: 26 HCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSY 85

Query: 63 Q 63
          +
Sbjct: 86 R 86

>d1ujda_ b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA0559
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.8 bits (142), Expect = 5e-12
 Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 3/72 (4%)

Query: 2   PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61
            G +I++++PGG AE TG L    +VLE NGI +  K+ ++V  ++   S    I V+  
Sbjct: 49  IGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQSIISQQSGEAEICVRL- 107

Query: 62  NQRANMSVPRRG 73
               NMS P  G
Sbjct: 108 --DLNMSGPSSG 117

>d1va8a1 b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {Mouse (Mus musculus) [TaxId: 10090]} Length = 100

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Maguk p55 subfamily member 5
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.0 bits (140), Expect = 7e-12
 Identities = 25/59 (42%), Positives = 37/59 (62%)

Query: 3   GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61
            + ISR+V GG AE +GLL   DEVLE+NGI + GK +++V D++      L   + P+
Sbjct: 42  SVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMHGTLTFVLIPS 100

>d1n7ea_ b.36.1.1 (A:) Glutamate receptor-interacting protein 1, GRIP1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 95

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor-interacting protein 1, GRIP1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 56.0 bits (135), Expect = 3e-11
 Identities = 18/62 (29%), Positives = 29/62 (46%)

Query: 2  PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61
            I IS L  GGLAE TG + + D +L +N   + GK L +   ++      + + +K  
Sbjct: 28 DPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQ 87

Query: 62 NQ 63
            
Sbjct: 88 TD 89

>d2fcfa1 b.36.1.1 (A:1148-1243) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.1 bits (135), Expect = 3e-11
 Identities = 14/59 (23%), Positives = 28/59 (47%)

Query: 2  PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKP 60
           GIFI  ++    A   G L   D ++EV+G+ +   S +Q  + +    + ++  V+ 
Sbjct: 36 RGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQS 94

>d1x45a1 b.36.1.1 (A:8-92) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.6 bits (134), Expect = 4e-11
 Identities = 13/59 (22%), Positives = 30/59 (50%)

Query: 1  VPGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
          +P + I+ ++ GG AE +G L + D+++ +NG  + G  L     ++    +   + + 
Sbjct: 25 LPTVIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQSRVKLN 83

>d1ihja_ b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 94

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Inad
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 55.7 bits (134), Expect = 4e-11
 Identities = 17/58 (29%), Positives = 27/58 (46%)

Query: 2  PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
           GIFI  +VP   A   G L V D +L +NG  V   +   V D++      + + ++
Sbjct: 35 TGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQ 92

>d1x5ra1 b.36.1.1 (A:8-106) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]} Length = 99

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.3 bits (133), Expect = 7e-11
 Identities = 13/57 (22%), Positives = 26/57 (45%)

Query: 3  GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
             +  + P   AE  GLL V D VL +NGI     ++++   ++   +    + ++
Sbjct: 39 PPLVCFIEPDSPAERCGLLQVGDRVLSINGIATEDGTMEEANQLLRDAALAHKVVLE 95

>d1qava_ b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [TaxId: 10090]} Length = 90

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntrophin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.5 bits (131), Expect = 9e-11
 Identities = 16/58 (27%), Positives = 28/58 (48%)

Query: 2  PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
            I IS++  G  A+ T  L V D +L VNG  ++  + D+    +      +++ VK
Sbjct: 30 MPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVK 87

>d1rgra_ b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 93

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 54.1 bits (130), Expect = 2e-10
 Identities = 19/58 (32%), Positives = 30/58 (51%)

Query: 2  PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
          P IFI++++PGG A   G L VND +L VN + V   +     + +    S + + V 
Sbjct: 31 PSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVM 88

>d1v62a_ b.36.1.1 (A:) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.3 bits (130), Expect = 2e-10
 Identities = 18/75 (24%), Positives = 33/75 (44%)

Query: 2   PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61
             I I R+ P  + + +G L   D +L ++G  +   SL + T ++ + S  + + + P 
Sbjct: 42  SVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLLASISEKVRLEILPV 101

Query: 62  NQRANMSVPRRGSYS 76
            Q      P  G  S
Sbjct: 102 PQSQRPLRPSSGPSS 116

>d1wf8a1 b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neurabin-i
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.3 bits (128), Expect = 3e-10
 Identities = 16/58 (27%), Positives = 31/58 (53%)

Query: 2  PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
           GIF+  +  GG A+  G + VND+++EV+GI + G + +    ++     N+   + 
Sbjct: 33 LGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRNTKGNVRFVIG 90

>d1uewa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 114

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.9 bits (129), Expect = 3e-10
 Identities = 15/72 (20%), Positives = 29/72 (40%)

Query: 2   PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61
               I R++ G  A+    L V D +L VNG  +       +  ++     ++ + + P 
Sbjct: 43  VPHKIGRIIDGSPADRCAKLKVGDRILAVNGQSIINMPHADIVKLIKDAGLSVTLRIIPQ 102

Query: 62  NQRANMSVPRRG 73
            +  + S P  G
Sbjct: 103 EELNSPSGPSSG 114

>d1v5qa_ b.36.1.1 (A:) Glutamate receptor interacting protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 122

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.3 bits (125), Expect = 1e-09
 Identities = 17/72 (23%), Positives = 32/72 (44%)

Query: 3   GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPAN 62
              IS +     AE  G+L + D V+ +NGI     + ++   ++  +S    +T++   
Sbjct: 46  PPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTLEIEF 105

Query: 63  QRANMSVPRRGS 74
             A   +P  GS
Sbjct: 106 DVAESVIPSSGS 117

>d2csja1 b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tjp2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 104

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tight junction protein ZO-2, Tjp2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.8 bits (124), Expect = 1e-09
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 2  PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
            I IS ++PGG A+  GLL  ND V+ VNG  +           +  +     I VK
Sbjct: 39 TSIVISDVLPGGPAD--GLLQENDRVVMVNGTPMEDVLHSFAVQQLRKSGKIAAIVVK 94

>d1g9oa_ b.36.1.1 (A:) Na+/H+ exchanger regulatory factor, NHERF {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Na+/H+ exchanger regulatory factor, NHERF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.0 bits (122), Expect = 2e-09
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 1/59 (1%)

Query: 2  PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKP 60
           G +I  + PG  AE  GLL   D ++EVNG  V  ++  QV   + A  + + + V  
Sbjct: 27 LGQYIRLVEPGSPAEKAGLL-AGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVD 84

>d1t2ma1 b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Afadin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.3 bits (120), Expect = 4e-09
 Identities = 19/58 (32%), Positives = 33/58 (56%)

Query: 2  PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
           GI++  +V GG A+  G LA  D++L V+G  + G S ++  ++M   SS + + V 
Sbjct: 31 LGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTRTSSVVTLEVA 88

>d2fnea1 b.36.1.1 (A:1955-2042) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.2 bits (120), Expect = 4e-09
 Identities = 11/57 (19%), Positives = 25/57 (43%)

Query: 2  PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITV 58
            I++  +   G A   G L   D+++ VNG  + G + ++   ++      + + V
Sbjct: 30 LPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMV 86

>d2cssa1 b.36.1.1 (A:8-115) Regulating synaptic membrane exocytosis protein 1, RIMS1 {Human (Homo sapiens) [TaxId: 9606]} Length = 108

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulating synaptic membrane exocytosis protein 1, RIMS1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.3 bits (120), Expect = 5e-09
 Identities = 18/58 (31%), Positives = 33/58 (56%)

Query: 2   PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
            G FI+++  G LA+  G L   DEVLE NG  + G + ++V ++++ + S   + + 
Sbjct: 47  LGAFITKVKKGSLADVVGHLRAGDEVLEWNGKPLPGATNEEVYNIILESKSEPQVEII 104

>d1um1a_ b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1849
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.3 bits (120), Expect = 5e-09
 Identities = 19/73 (26%), Positives = 34/73 (46%)

Query: 2   PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61
           PG++I  L+PG  A + G L++ D +LEVNG  + G    +  D++      +   V  +
Sbjct: 36  PGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDLIRHGGKKMRFLVAKS 95

Query: 62  NQRANMSVPRRGS 74
           +      +    S
Sbjct: 96  DVETAKKIHSGPS 108

>d1wi4a1 b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mouse (Mus musculus) [TaxId: 10090]} Length = 96

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntaxin binding protein 4
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.9 bits (119), Expect = 6e-09
 Identities = 11/46 (23%), Positives = 24/46 (52%)

Query: 2  PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMM 47
          P ++I  ++PGG     G L   D+++ +N   + G S ++   ++
Sbjct: 34 PLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSII 79

>d1v6ba_ b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxId: 10090]} Length = 118

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.0 bits (119), Expect = 1e-08
 Identities = 15/68 (22%), Positives = 31/68 (45%), Gaps = 6/68 (8%)

Query: 2   PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMM------VANSSNLI 55
             + +S +  GG AE  G +   DE++ +NG +V   +L +    +        +  +L+
Sbjct: 43  GKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGDWIDLV 102

Query: 56  ITVKPANQ 63
           + V P  +
Sbjct: 103 VAVCPPKE 110

>d1uepa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.5 bits (118), Expect = 1e-08
 Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 2/70 (2%)

Query: 4   IFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQ 63
           I I  ++  G A+  G L   DE++ V+GI VAGK+   V D+M   + N  + +    +
Sbjct: 36  ILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLMHHAARNGQVNLTV--R 93

Query: 64  RANMSVPRRG 73
           R  +S P  G
Sbjct: 94  RKVLSGPSSG 103

>d1y7na1 b.36.1.1 (A:12-90) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.6 bits (116), Expect = 1e-08
 Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 1/59 (1%)

Query: 3  GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61
             I  L+ GG+AE  G+  V   ++E+NG  V     +++  ++      + +   PA
Sbjct: 21 NGIICSLMRGGIAERGGVR-VGHRIIEINGQSVVATPHEKIVHILSNAVGEIHMKTMPA 78

>d1ozia_ b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 10090]} Length = 99

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Phosphatase hPTP1e
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.8 bits (116), Expect = 1e-08
 Identities = 16/58 (27%), Positives = 30/58 (51%)

Query: 2  PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
           GI++  ++P G AES G +   D VL VNG+ + G +  Q  + +      + + ++
Sbjct: 37 GGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLE 94

>d1p1da2 b.36.1.1 (A:115-213) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 99

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 48.7 bits (116), Expect = 2e-08
 Identities = 11/58 (18%), Positives = 28/58 (48%)

Query: 2  PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
            + IS +  G +A  TG L + D++L ++ I +   S++    ++      + + ++
Sbjct: 38 DPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQCEDLVKLKIR 95

>d1q3oa_ b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 104

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Shank1, PDZ domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 48.9 bits (116), Expect = 2e-08
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 2  PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITV 58
             ++  +  GG+A   GL  + D ++EVNG  V      QV +M+    + L++ V
Sbjct: 43 ALQYLESVDEGGVAWRAGLR-MGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKV 98

>d1tp5a1 b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 102

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 48.7 bits (116), Expect = 2e-08
 Identities = 18/65 (27%), Positives = 32/65 (49%)

Query: 2  PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61
           GIFIS ++ GG A+ +G L   D++L VNG+ +   S +Q    +      + I  +  
Sbjct: 33 EGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYK 92

Query: 62 NQRAN 66
           +  +
Sbjct: 93 PEEYS 97

>d1wfva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (116), Expect = 2e-08
 Identities = 15/72 (20%), Positives = 32/72 (44%), Gaps = 4/72 (5%)

Query: 2   PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61
             +++ RL   G A   G + V D+++E+NG      +  +  +++ +    + + +K  
Sbjct: 36  MDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIKSGGRRVRLLLK-- 93

Query: 62  NQRANMSVPRRG 73
             R   S P  G
Sbjct: 94  --RGTGSGPSSG 103

>d2f5ya1 b.36.1.1 (A:19-95) Regulator of G-protein signaling 3, RGS3 {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulator of G-protein signaling 3, RGS3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (114), Expect = 2e-08
 Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 2  PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
            + +  +  GG AE  GL    D VL++N   V      ++   + +  S +I+ V 
Sbjct: 18 SPVRVQAVDSGGPAERAGLQ-QLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILLVW 74

>d1x6da1 b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (115), Expect = 3e-08
 Identities = 13/57 (22%), Positives = 23/57 (40%)

Query: 2  PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITV 58
            I + R+ P GLA   G +   +EVL +NG  + G +      ++          +
Sbjct: 35 KVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAILRQAREPRQAVI 91

>d1whaa_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (114), Expect = 4e-08
 Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 4/72 (5%)

Query: 2   PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61
            GIF+SR+  GG A   G L V D VL +NG+ V     D    ++ A S  + + +   
Sbjct: 38  AGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLLTAASPTIALLL--- 94

Query: 62  NQRANMSVPRRG 73
            +R   S P  G
Sbjct: 95  -EREAGSGPSSG 105

>d1uf1a_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.5 bits (115), Expect = 4e-08
 Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 6/84 (7%)

Query: 2   PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61
            GI+I+ + PG  AE +GL  V D++LEVNG        D+   ++  +S +LI+TVK  
Sbjct: 46  LGIYITGVDPGSEAEGSGL-KVGDQILEVNGRSFLNILHDEAVRLL-KSSRHLILTVK-- 101

Query: 62  NQRANMSVPRRGSYSRTSQLSSDS 85
                     R +   T  ++S S
Sbjct: 102 --DVGRLPHARTTVDETKWIASSS 123

>d1ueqa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 123

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (115), Expect = 4e-08
 Identities = 15/88 (17%), Positives = 33/88 (37%), Gaps = 9/88 (10%)

Query: 2   PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61
             + +  ++P G A   G +   D ++ +N + V G +   V  +  +          P 
Sbjct: 44  EFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKLFQS---------VPI 94

Query: 62  NQRANMSVPRRGSYSRTSQLSSDSHQST 89
            Q  N+ + R        +  ++S  S+
Sbjct: 95  GQSVNLVLCRGYPLPFDPEDPANSGPSS 122

>d2cs5a1 b.36.1.1 (A:8-113) Tyrosine-protein phosphatase non-receptor type 4, PTPN4 {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tyrosine-protein phosphatase non-receptor type 4, PTPN4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.6 bits (113), Expect = 5e-08
 Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 5/63 (7%)

Query: 3  GIFISRLVPGGLAE-STGLLAVNDEVLEVNGILVAGKSLDQVTDMMVA----NSSNLIIT 57
           + +SR+ PG  A+     L   D+V+ +NG  +A  + DQV   + A    +S  L++ 
Sbjct: 35 PVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELMLL 94

Query: 58 VKP 60
          V+P
Sbjct: 95 VRP 97

>d1x5na1 b.36.1.1 (A:8-108) Harmonin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.2 bits (112), Expect = 6e-08
 Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 2/63 (3%)

Query: 2  PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61
          PGIFIS + PG L+   G L + D+++EVNG+  +     +  +++  +S +L I++  A
Sbjct: 34 PGIFISHVKPGSLSAEVG-LEIGDQIVEVNGVDFSNLDHKEAVNVL-KSSRSLTISIVAA 91

Query: 62 NQR 64
            R
Sbjct: 92 AGR 94

>d1uhpa_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.3 bits (112), Expect = 6e-08
 Identities = 17/58 (29%), Positives = 31/58 (53%)

Query: 2  PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
           GIF+S++V  G A   G L ++D ++EVNG  ++  + DQ  +        +++ V 
Sbjct: 41 EGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVEAFKTAKEPIVVQVL 98

>d1ufxa_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.2 bits (112), Expect = 6e-08
 Identities = 15/46 (32%), Positives = 23/46 (50%)

Query: 2  PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMM 47
          P   I  +  GG A + G L V   +LEVNG+ + GK   +   ++
Sbjct: 32 PLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARII 77

>d2h3la1 b.36.1.1 (A:1310-1412) Erbin {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Erbin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.8 bits (111), Expect = 8e-08
 Identities = 13/58 (22%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 2  PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
           GIF++R+ P G A    LL   D++++ NG         Q   ++    + + + + 
Sbjct: 43 DGIFVTRVQPEGPAS--KLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIV 98

>d1m5za_ b.36.1.1 (A:) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 91

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 46.5 bits (110), Expect = 8e-08
 Identities = 11/58 (18%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 2  PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
           G+++  + P G  +  G L   D +L+VN +         V  ++  + + L + + 
Sbjct: 32 KGVYVKNIRPAGPGD-LGGLKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVIS 88

>d1w9ea1 b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (109), Expect = 1e-07
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query: 3  GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLI-ITVK 59
          GIF+  +     A   GL    D+VL++NG   AG S D+   ++       I +T++
Sbjct: 26 GIFVQLVQANSPASLVGLR-FGDQVLQINGENCAGWSSDKAHKVLKQAFGEKITMTIR 82

>d1rgwa_ b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Zasp (Cypher, Oracle 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (109), Expect = 1e-07
 Identities = 14/62 (22%), Positives = 31/62 (50%), Gaps = 1/62 (1%)

Query: 2  PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61
            + ISR+ PG  A     L+  D V+ ++G+     +  +  + + + S NL +T++ +
Sbjct: 25 MPLTISRITPGSKAA-QSQLSQGDLVVAIDGVNTDTMTHLEAQNKIKSASYNLSLTLQKS 83

Query: 62 NQ 63
           +
Sbjct: 84 KR 85

>d2fe5a1 b.36.1.1 (A:223-314) Synapse-associated protein 102 {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synapse-associated protein 102
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (109), Expect = 1e-07
 Identities = 13/58 (22%), Positives = 27/58 (46%)

Query: 2  PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
            I+I++++ GG A+  G L + D +L VN   +     ++    +   S  + + V 
Sbjct: 31 NSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVA 88

>d1ujua_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.2 bits (109), Expect = 2e-07
 Identities = 18/63 (28%), Positives = 29/63 (46%)

Query: 2   PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61
            GIFIS++ P G A   G L V   +LEVN   + G +  +   ++ +    L + V   
Sbjct: 44  EGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQLLRSVGDTLTVLVCDG 103

Query: 62  NQR 64
            + 
Sbjct: 104 FES 106

>d1x5qa1 b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (108), Expect = 2e-07
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 1/58 (1%)

Query: 2  PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
           GIFISR+   G A   G+  V D++LEVNG+ + G    +  + +    + + + V 
Sbjct: 39 EGIFISRVSEEGPAARAGVR-VGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRVW 95

>d2f0aa1 b.36.1.1 (A:251-342) Segment polarity protein dishevelled homolog Dvl-2 {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Segment polarity protein dishevelled homolog Dvl-2
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 44.5 bits (105), Expect = 5e-07
 Identities = 13/46 (28%), Positives = 22/46 (47%)

Query: 2  PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMM 47
           GI+I  ++ GG   + G +   D +L+VN I     S D    ++
Sbjct: 29 GGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMSNDDAVRVL 74

>d1ueza_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (105), Expect = 6e-07
 Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 5/72 (6%)

Query: 2   PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61
            GI++S + PG LAE  GL  V D++L VN   +A  +  +    +   S  L+++V   
Sbjct: 35  VGIYVSLVEPGSLAEKEGLR-VGDQILRVNDKSLARVTHAEAVKAL-KGSKKLVLSVY-- 90

Query: 62  NQRANMSVPRRG 73
                +S P  G
Sbjct: 91  -SAGRISGPSSG 101

>d1wf7a_ b.36.1.1 (A:) Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 10090]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Enigma homolog ENH
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.2 bits (104), Expect = 8e-07
 Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 1/75 (1%)

Query: 2   PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61
             + IS L  GG A     + + D VL ++GI   G +  +  + + A + +L +T++ A
Sbjct: 29  MPLTISSLKDGGKAS-QAHVRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRA 87

Query: 62  NQRANMSVPRRGSYS 76
           +  A       G  S
Sbjct: 88  SAAAKSEPVSSGPSS 102

>d1wifa_ b.36.1.1 (A:) hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik) {Mouse (Mus musculus) [TaxId: 10090]} Length = 126

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.6 bits (105), Expect = 9e-07
 Identities = 15/58 (25%), Positives = 28/58 (48%)

Query: 2   PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
           P + IS L+  G A S G+L   D ++ V    V G +L +   ++   +   ++ +K
Sbjct: 49  PYLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNITIGTVLQIK 106

>d1i16a_ b.36.1.2 (A:) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.7 bits (105), Expect = 1e-06
 Identities = 15/84 (17%), Positives = 36/84 (42%), Gaps = 10/84 (11%)

Query: 2   PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61
             + I+R+  G  +E +  +   DE+L++ G  + G +  +  +++ A     +  V   
Sbjct: 57  KPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIV--- 113

Query: 62  NQRANMSVPRRGSYSRTSQLSSDS 85
                  + R+   S+ +  + DS
Sbjct: 114 -------IRRKSLQSKETTAAGDS 130

>d1vb7a_ b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ-LIM protein mystique
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.0 bits (101), Expect = 2e-06
 Identities = 10/58 (17%), Positives = 23/58 (39%), Gaps = 1/58 (1%)

Query: 2  PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
            I ++++   G AE    L   D ++ +NG         +    +  ++S L + + 
Sbjct: 30 TPIIVTKVTERGKAE-AADLRPGDIIVAINGQSAENMLHAEAQSKIRQSASPLRLQLD 86

>d1wi2a_ b.36.1.1 (A:) PDZ domain containing protein 11, Pdzk11 {Mouse (Mus musculus) [TaxId: 10090]} Length = 104

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ domain containing protein 11, Pdzk11
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.0 bits (101), Expect = 2e-06
 Identities = 14/58 (24%), Positives = 27/58 (46%), Gaps = 2/58 (3%)

Query: 2  PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK 59
           GIFIS+++P   A     L   D+VL VN +        +  +++   +  + + V+
Sbjct: 41 LGIFISKVIPDSDAH-RAGLQEGDQVLAVNDVDFQDIEHSKAVEIL-KTAREISMRVR 96

>d1qaua_ b.36.1.1 (A:) Neuronal nitric oxide synthase, NNOS {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 112

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neuronal nitric oxide synthase, NNOS
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.1 bits (101), Expect = 2e-06
 Identities = 17/57 (29%), Positives = 29/57 (50%)

Query: 2  PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITV 58
          P + IS L+ GG AE +GL+   D +L VN   +   S D   +++   +S   + +
Sbjct: 26 PPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVL 82

>d1uita_ b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Discs large 5 protein KIAA0583
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.1 bits (101), Expect = 3e-06
 Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 1/71 (1%)

Query: 2   PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61
            GI++S++  G +A   GL    D++LE NGI +   +  Q   ++      + I  +  
Sbjct: 42  GGIYVSKVTVGSIAHQAGLE-YGDQLLEFNGINLRSATEQQARLIIGQQCDTITILAQYN 100

Query: 62  NQRANMSVPRR 72
                +S   R
Sbjct: 101 PHVHQLSSHSR 111

>d1wg6a_ b.36.1.1 (A:) Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10) {Mouse (Mus musculus) [TaxId: 10090]} Length = 127

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.1 bits (101), Expect = 3e-06
 Identities = 17/46 (36%), Positives = 27/46 (58%)

Query: 2   PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMM 47
            GIFI  ++ GG A   G L +ND+++ VNG  + GKS  +  + +
Sbjct: 55  LGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETL 100

>d1wh1a_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]} Length = 124

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (99), Expect = 5e-06
 Identities = 12/57 (21%), Positives = 29/57 (50%), Gaps = 2/57 (3%)

Query: 2   PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITV 58
            GI+IS + P  +A   G +   D ++++NGI V  ++ ++   ++ +  +     +
Sbjct: 48  IGIYISEIDPNSIAAKDGRIREGDRIIQINGIEV--QNREEAVALLTSEENKNFSLL 102

>d1v5la_ b.36.1.1 (A:) Alpha-actinin-2 associated LIM protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Alpha-actinin-2 associated LIM protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.0 bits (93), Expect = 2e-05
 Identities = 17/78 (21%), Positives = 28/78 (35%), Gaps = 5/78 (6%)

Query: 2   PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA 61
             + I+R+ PG  A     L   D +L ++G      +     D + A S  L + +   
Sbjct: 29  QPLVITRITPGSKAA-AANLCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKI--- 84

Query: 62  NQRANMSVPRRGSYSRTS 79
             RA   +      S  S
Sbjct: 85  -DRAETRLWSPQVSSGPS 101

>d1r6ja_ b.36.1.1 (A:) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 82

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (89), Expect = 6e-05
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 1  VPGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKP 60
               I+ +V    A   GLL     + E+NG  V G    Q+ D++  + + + IT+ P
Sbjct: 22 FKNGKITSIVKDSSAARNGLL-TEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMP 80

Query: 61 A 61
          A
Sbjct: 81 A 81

>d1vaea_ b.36.1.1 (A:) Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 111

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Rhophilin-2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.9 bits (85), Expect = 3e-04
 Identities = 8/69 (11%), Positives = 24/69 (34%), Gaps = 3/69 (4%)

Query: 4   IFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLI--ITVKPA 61
           + +  L P   A         D ++ + G+     ++ +V  ++ +     +    V   
Sbjct: 38  VQVHFLDPHCSAS-LAGAKEGDYIVSIQGVDCKWLTVSEVMKLLKSFGGEEVEMKVVSLL 96

Query: 62  NQRANMSVP 70
           +  ++M   
Sbjct: 97  DSTSSMHNK 105

>d1ujva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.8 bits (77), Expect = 0.003
 Identities = 9/58 (15%), Positives = 19/58 (32%)

Query: 1  VPGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITV 58
                 R+      +    L   D ++E+N   V   S  +V D++         ++
Sbjct: 28 ADSPTGQRVKQILDIQGCPGLCEGDLIVEINQQNVQNLSHTEVVDILKDCPIGSETSL 85

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	241
d1rzxa_	98	GTPase-binding domain of the cell polarity protein	99.43
d2fcfa1	96	Multiple PDZ domain protein {Human (Homo sapiens)	99.42
d2fe5a1	92	Synapse-associated protein 102 {Human (Homo sapien	99.41
d1t2ma1	92	Afadin {Human (Homo sapiens) [TaxId: 9606]}	99.4
d1kwaa_	88	Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]}	99.39
d1rgra_	93	Synaptic protein PSD-95 {Rat (Rattus norvegicus) [	99.39
d1ozia_	99	Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 1	99.39
d1ihja_	94	Inad {Fruit fly (Drosophila melanogaster) [TaxId:	99.38
d1uewa_	114	Membrane associated guanylate kinase inverted-2 (M	99.38
d1wf8a1	94	Neurabin-i {Human (Homo sapiens) [TaxId: 9606]}	99.37
d1uhpa_	107	Hypothetical protein KIAA1095 {Human (Homo sapiens	99.37
d1p1da2	99	Glutamate receptor interacting protein {Rat (Rattu	99.36
d1um1a_	110	Hypothetical protein KIAA1849 {Human (Homo sapiens	99.35
d1qava_	90	Syntrophin {Mouse (Mus musculus) [TaxId: 10090]}	99.32
d1g9oa_	91	Na+/H+ exchanger regulatory factor, NHERF {Human (	99.32
d1va8a1	100	Maguk p55 subfamily member 5 {Mouse (Mus musculus)	99.32
d1rgwa_	85	Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [Tax	99.32
d1whaa_	105	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	99.32
d1n7ea_	95	Glutamate receptor-interacting protein 1, GRIP1 {R	99.31
d2fnea1	88	Multiple PDZ domain protein {Human (Homo sapiens)	99.3
d1q3oa_	104	Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId	99.29
d1y7na1	79	Amyloid beta A4 precursor protein-binding family A	99.29
d1ujua_	111	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	99.29
d1x5qa1	97	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	99.29
d2f0aa1	92	Segment polarity protein dishevelled homolog Dvl-2	99.28
d1v62a_	117	Glutamate receptor interacting protein 2, GRIP2 (K	99.28
d1ujda_	117	Hypothetical protein KIAA0559 {Human (Homo sapiens	99.28
d1r6ja_	82	Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.27
d1tp5a1	102	Synaptic protein PSD-95 {Rat (Rattus norvegicus) [	99.27
d1qaua_	112	Neuronal nitric oxide synthase, NNOS {Rat (Rattus	99.26
d1x45a1	85	Amyloid beta A4 precursor protein-binding family A	99.26
d1m5za_	91	Glutamate receptor interacting protein {Rat (Rattu	99.26
d2f5ya1	77	Regulator of G-protein signaling 3, RGS3 {Human (H	99.25
d1fc6a3	92	Photosystem II D1 C-terminal processing protease {	99.25
d1ueqa_	123	Membrane associated guanylate kinase inverted-2 (M	99.24
d1uf1a_	128	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	99.24
d1v5qa_	122	Glutamate receptor interacting protein {Mouse (Mus	99.22
d1x5na1	101	Harmonin {Human (Homo sapiens) [TaxId: 9606]}	99.22
d1vb7a_	94	PDZ-LIM protein mystique {Mouse (Mus musculus) [Ta	99.22
d1w9ea1	85	Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.21
d1wi2a_	104	PDZ domain containing protein 11, Pdzk11 {Mouse (M	99.21
d2h3la1	103	Erbin {Human (Homo sapiens) [TaxId: 9606]}	99.2
d1wi4a1	96	Syntaxin binding protein 4 {Mouse (Mus musculus) [	99.2
d1wf7a_	103	Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 1	99.19
d2cssa1	108	Regulating synaptic membrane exocytosis protein 1,	99.19
d1x6da1	107	Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]	99.19
d1uita_	117	Discs large 5 protein KIAA0583 {Human (Homo sapien	99.18
d1vaea_	111	Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]}	99.17
d1wfva_	103	Membrane associated guanylate kinase inverted-2 (M	99.17
d1i16a_	130	Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]	99.16
d1uepa_	103	Membrane associated guanylate kinase inverted-2 (M	99.16
d1v5la_	103	Alpha-actinin-2 associated LIM protein {Mouse (Mus	99.14
d1wg6a_	127	Partitioning-defective 3-like protein, PAR3-L (RIK	99.14
d2csja1	104	Tight junction protein ZO-2, Tjp2 {Mouse (Mus musc	99.12
d1wifa_	126	hypothetical PDZ domain containing protein Uqcrc2	99.1
d1x5ra1	99	Glutamate receptor interacting protein 2, GRIP2 (K	99.08
d1ueza_	101	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	99.07
d1ufxa_	103	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	99.06
d1v6ba_	118	Harmonin {Mouse (Mus musculus) [TaxId: 10090]}	99.05
d1ky9b2	88	Protease Do (DegP, HtrA), C-terminal domains {Esch	99.03
d1lcya1	100	Mitochondrial serine protease HtrA2 {Human (Homo s	99.03
d2cs5a1	106	Tyrosine-protein phosphatase non-receptor type 4,	99.01
d1wh1a_	124	Hypothetical protein KIAA1095 {Human (Homo sapiens	99.0
d2z9ia1	88	Protease PepD {Mycobacterium tuberculosis [TaxId:	98.92
d1k32a1	91	Tricorn protease {Archaeon Thermoplasma acidophilu	98.74
d2hgaa1	103	Uncharacterized protein MTH1368 {Methanobacterium	98.72
d1ky9a1	94	Protease Do (DegP, HtrA), C-terminal domains {Esch	98.71
d2i6va1	87	General secretion pathway protein C, EpsC {Vibrio	98.65
d1sota1	99	Stress sensor protease DegS, C-terminal domain {Es	98.63
d1ujva_	96	Membrane associated guanylate kinase inverted-2 (M	98.54
d1wmhb_	82	Partitioning defective-6 homolog alpha, PAR-6 alph	95.78
d1vyua1	136	SH3-like domain of the L-type calcium channel {Rat	91.78
d1t0ha_	96	SH3-like domain of the L-type calcium channel {Rab	91.43
d1vyva1	145	SH3-like domain of the L-type calcium channel {Rat	83.86
d1kjwa1	96	Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}	80.12

>d1rzxa_ b.36.1.1 (A:) GTPase-binding domain of the cell polarity protein par6 (Par-6B) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: GTPase-binding domain of the cell polarity protein par6 (Par-6B)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.43  E-value=2e-13  Score=103.02  Aligned_cols=61  Identities=95%  Similarity=1.292  Sum_probs=57.3

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCC
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPAN   62 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~   62 (241)
                      +|+||..|.++|||+++|.|++||+|++|||+++.+++|++++++|+.+...++|+|+|++
T Consensus        38 ~gi~I~~v~~gg~A~~~G~l~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~l~v~p~~   98 (98)
T d1rzxa_          38 PGIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQVTDMMVANSSNLIITVKPAN   98 (98)
T ss_dssp             EEEEEEEECTTCHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHTCTEEEEEEECCC
T ss_pred             CCEEEEEECCCChHHhcCcCCCCcEEeeECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCc
Confidence            3799999999999999997799999999999999999999999999988889999999863

>d2fcfa1 b.36.1.1 (A:1148-1243) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=3.5e-13  Score=100.71  Aligned_cols=59  Identities=24%  Similarity=0.432  Sum_probs=54.4

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEec
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKP   60 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p   60 (241)
                      .|+||.+|.++|||+++|.|++||+|++|||+++.+++|++++++|+++...++|+|.+
T Consensus        36 ~gi~V~~v~~~s~A~~~G~L~~GD~Il~VNg~~v~~~t~~ea~~~lk~~~~~v~L~V~r   94 (96)
T d2fcfa1          36 RGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQS   94 (96)
T ss_dssp             --EEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSSEEEEEEC
T ss_pred             CCEEEEEECCCCHHHHcCCCcCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEE
Confidence            47999999999999999977999999999999999999999999999888889999986

>d2fe5a1 b.36.1.1 (A:223-314) Synapse-associated protein 102 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synapse-associated protein 102
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=4.3e-13  Score=99.68  Aligned_cols=61  Identities=21%  Similarity=0.409  Sum_probs=56.5

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCC
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPAN   62 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~   62 (241)
                      .|+||.+|.++|||+++|.|++||+|++|||+++.++++++++++|+++...++|+|.+.+
T Consensus        31 ~gi~I~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~e~~~~lk~~~~~v~L~v~Rpg   91 (92)
T d2fe5a1          31 NSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKPG   91 (92)
T ss_dssp             CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHTCCSEEEEEEECCC
T ss_pred             CCEEEEEECCCCChhhcCCCCCCCEEEEeCCeecCCCCHHHHHHHHHcCCCEEEEEEECCC
Confidence            4799999999999999997799999999999999999999999999988778999998653

>d1t2ma1 b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Afadin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=4.9e-13  Score=99.52  Aligned_cols=61  Identities=31%  Similarity=0.541  Sum_probs=56.6

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCC
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPAN   62 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~   62 (241)
                      .|+||..|.++|||+++|.|++||+|++|||+++.+++|++++++|+...+.|+|+|.+.+
T Consensus        31 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~ea~~~l~~~~~~v~L~v~R~g   91 (92)
T d1t2ma1          31 LGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTRTSSVVTLEVAKQG   91 (92)
T ss_dssp             CEEEEEEECTTSHHHHHTCCCSSEEEEEETTEECTTCCHHHHHHHHHSCCSEEEEEEEECC
T ss_pred             CCEEEEEEcCCChHHhcCCCCcccEeeeeCCeecCCCCHHHHHHHHHcCCCeEEEEEEeCC
Confidence            3799999999999999997799999999999999999999999999988888999998753

>d1kwaa_ b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Cask/Lin-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=4.8e-13  Score=99.00  Aligned_cols=63  Identities=27%  Similarity=0.542  Sum_probs=58.2

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCCcc
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQR   64 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~q~   64 (241)
                      .+++|.+|.+||||+++|.|++||+|++|||+++.++++++++++|+.+.+.|+|+|.|..+.
T Consensus        25 ~~~~I~~v~~gg~A~~~g~l~~GD~Il~INg~~v~~~~~~~~~~ll~~~~~~v~L~i~p~~~~   87 (88)
T d1kwaa_          25 NHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYRE   87 (88)
T ss_dssp             GGEEEEEECTTSHHHHHTCCCTTCEEEEETTEEGGGSCHHHHHHHHHHCCEEEEEEEECCCCC
T ss_pred             CCEEEEEECCCCHHHHcCCCccCcEEEEECCEECCCCCHHHHHHHHHcCCCcEEEEEEeCCcC
Confidence            378999999999999999779999999999999999999999999998888999999987553

>d1rgra_ b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.39  E-value=5.1e-13  Score=99.13  Aligned_cols=60  Identities=32%  Similarity=0.488  Sum_probs=56.2

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecC
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA   61 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~   61 (241)
                      .|+||.+|.++|||+++|.|++||+|++|||+++.+++|++++++|+.+...++|+|.+.
T Consensus        31 ~gi~I~~V~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~v~L~v~R~   90 (93)
T d1rgra_          31 PSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRR   90 (93)
T ss_dssp             CCCCEEEECTTSHHHHHCCCCTTCEEEEETTEECSSSCHHHHHHHHHHTTTEEEEEEECS
T ss_pred             CCEEEEEECCCChHHhcCCCCcCcEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEeC
Confidence            478999999999999999779999999999999999999999999998888899999864

>d1ozia_ b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Phosphatase hPTP1e
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.39  E-value=7.3e-13  Score=99.10  Aligned_cols=60  Identities=27%  Similarity=0.509  Sum_probs=56.1

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecC
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA   61 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~   61 (241)
                      .|+||..|.++|||+++|.|++||+|++|||+++.+++|++++++|+.+...|+|+|.+.
T Consensus        37 ~~i~V~~V~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~~a~~~lk~~~~~v~L~v~R~   96 (99)
T d1ozia_          37 GGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKG   96 (99)
T ss_dssp             CCEEEEEECSSSHHHHHTCCCTTCEEEEETTEECSSCCHHHHHHHHHHSCSEEEEEEECC
T ss_pred             CCEEEEEECCCChHHhcCCCCccCEEEEECCEEcCCCCHHHHHHHHHCCCCeEEEEEEeC
Confidence            379999999999999999779999999999999999999999999998888899999874

>d1ihja_ b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Inad
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.38  E-value=6.7e-13  Score=98.61  Aligned_cols=58  Identities=29%  Similarity=0.476  Sum_probs=55.0

Q ss_pred             cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEec
Q psy16075          3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKP   60 (241)
Q Consensus         3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p   60 (241)
                      |+||..|.++|||+++|.|++||+|++|||+++.++++++++++|+.+...|+|+|.+
T Consensus        36 gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~ll~~~~~~v~L~V~R   93 (94)
T d1ihja_          36 GIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQT   93 (94)
T ss_dssp             EEEEEEECTTSHHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHHHSCSEEEEEEEE
T ss_pred             CEEEEEECCCCHHHHhCCCChhcEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEe
Confidence            6899999999999999977999999999999999999999999999888889999875

>d1uewa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=4.4e-13  Score=102.66  Aligned_cols=63  Identities=19%  Similarity=0.333  Sum_probs=57.6

Q ss_pred             cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCCccc
Q psy16075          3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQRA   65 (241)
Q Consensus         3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~q~~   65 (241)
                      +++|.+|.++++|+++|.|++||+|++|||++|.++++++++++|+++...|+|+|.|..+..
T Consensus        44 ~~~I~~I~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~ev~~ll~~~~~~v~l~V~r~~~~~  106 (114)
T d1uewa_          44 PHKIGRIIDGSPADRCAKLKVGDRILAVNGQSIINMPHADIVKLIKDAGLSVTLRIIPQEELN  106 (114)
T ss_dssp             SCEEEEECTTCTTGGGSSCCTTCBEEEETTBCTTTSCHHHHHHHHHHTTTEEEEEECCCSCCC
T ss_pred             CEEEEEECCCCHHHhhccCCcCcEEeEeCCcccCCCcHHHHHHHHHcCCCeEEEEEEeCCCcC
Confidence            589999999999999997799999999999999999999999999988888999998864433

>d1wf8a1 b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neurabin-i
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=7e-13  Score=98.84  Aligned_cols=59  Identities=27%  Similarity=0.545  Sum_probs=55.6

Q ss_pred             cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecC
Q psy16075          3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA   61 (241)
Q Consensus         3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~   61 (241)
                      |+||.+|.++|||+++|.|++||+|++|||+++.+++|++++++|+.+.+.++|+|.+.
T Consensus        34 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~L~V~R~   92 (94)
T d1wf8a1          34 GIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRNTKGNVRFVIGRE   92 (94)
T ss_dssp             EEEEEEECTTCHHHHHCSSCTTCBEEEETTEECBSCCHHHHHHHHHHCCSEEEEEEEEE
T ss_pred             CEEEEEECCCChHHHcCCCCcCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeC
Confidence            68999999999999999779999999999999999999999999998888899999763

>d1uhpa_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=1.1e-12  Score=100.01  Aligned_cols=60  Identities=28%  Similarity=0.495  Sum_probs=56.2

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecC
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA   61 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~   61 (241)
                      .|+||.+|.+++||+++|.|++||+|++|||+++.+++|++++++|+.+...++|+|.+.
T Consensus        41 ~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNg~~v~~~t~~eav~~lk~~~~~v~l~v~r~  100 (107)
T d1uhpa_          41 EGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVEAFKTAKEPIVVQVLRR  100 (107)
T ss_dssp             CCCEEEEECSSSHHHHTTCCCSSCEEEEETTEECTTCCHHHHHHHHHHCCSSEEEEEEEC
T ss_pred             CCEEEEEECCCCHHHHhCCCcceeEEeEECCEECCCCCHHHHHHHHHhCCCcEEEEEEEC
Confidence            479999999999999999779999999999999999999999999999888999999763

>d1p1da2 b.36.1.1 (A:115-213) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.36  E-value=1e-12  Score=98.79  Aligned_cols=60  Identities=18%  Similarity=0.375  Sum_probs=56.6

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecC
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA   61 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~   61 (241)
                      .|+||..|.++|+|+++|.|++||+|++|||+++.+++|++++++|+++.+.++|+|.+.
T Consensus        38 ~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~ll~~~~~~v~L~V~r~   97 (99)
T d1p1da2          38 DPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQCEDLVKLKIRKD   97 (99)
T ss_dssp             CCCEEEECCSSSHHHHTSCCCTTCEEEEETTEEGGGCCHHHHHHHHHHCTTCEEEEEECC
T ss_pred             CCEEEEEEcCCchhhhcCCCCCCCEEEeeCCEECCCCCHHHHHHHHHcCCCeEEEEEEeC
Confidence            369999999999999999779999999999999999999999999999888899999875

>d1um1a_ b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1849
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=1.1e-12  Score=100.05  Aligned_cols=62  Identities=29%  Similarity=0.546  Sum_probs=57.3

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCCc
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQ   63 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~q   63 (241)
                      +++||.+|.+++||+++|.|++||+|++|||+++.+++|++++++|+.+...+.|+|.+...
T Consensus        36 ~~i~V~~v~~gg~A~~~G~L~~GD~Il~INg~~v~~~~~~ev~~llk~~~~~v~l~v~r~~~   97 (110)
T d1um1a_          36 PGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDLIRHGGKKMRFLVAKSDV   97 (110)
T ss_dssp             SSEEEEEECTTSHHHHHSCCCTTCEEEEESSCBCSSCCHHHHHHHHHTCCSEEEEEEECCCH
T ss_pred             CCEEEEEECCCCHHHHcCCCccCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCC
Confidence            47999999999999999977999999999999999999999999999888889999987643

>d1qava_ b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntrophin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.32  E-value=2.5e-12  Score=95.73  Aligned_cols=58  Identities=28%  Similarity=0.403  Sum_probs=54.9

Q ss_pred             cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEec
Q psy16075          3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKP   60 (241)
Q Consensus         3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p   60 (241)
                      |+||..|.+++||+++|.|++||+|++|||+++.++++++++++|+++.+.++|+|.+
T Consensus        31 ~i~V~~V~~~~~A~~~G~L~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~~v~l~v~~   88 (90)
T d1qava_          31 PILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKY   88 (90)
T ss_dssp             EEEEEEECTTSHHHHTTCCCTTEEEEEETTEECTTCCHHHHHHHHHTCCSEEEEEEEE
T ss_pred             CEEEEEEcCCCceeeCCCCCccCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEE
Confidence            6899999999999999977999999999999999999999999999888889998875

>d1g9oa_ b.36.1.1 (A:) Na+/H+ exchanger regulatory factor, NHERF {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Na+/H+ exchanger regulatory factor, NHERF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=3.7e-12  Score=95.06  Aligned_cols=61  Identities=30%  Similarity=0.391  Sum_probs=56.1

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCCc
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQ   63 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~q   63 (241)
                      .++||..|.+++||+++|+ ++||+|++|||+++.+++|++++++|+..+..++|+|.+...
T Consensus        27 ~~~~V~~V~~g~~A~~aGl-~~GD~Il~VNg~~v~~~t~~e~~~ll~~~~~~v~L~v~~~~~   87 (91)
T d1g9oa_          27 LGQYIRLVEPGSPAEKAGL-LAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPET   87 (91)
T ss_dssp             SSEEEEEECTTSHHHHTTC-CTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEEEECCCC
T ss_pred             CCEEEEEEcCCCHHHHcCC-CCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEECCCC
Confidence            4789999999999999995 999999999999999999999999999888889999986543

>d1va8a1 b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Maguk p55 subfamily member 5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.32  E-value=2.8e-12  Score=97.23  Aligned_cols=60  Identities=42%  Similarity=0.701  Sum_probs=56.4

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecC
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA   61 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~   61 (241)
                      .+++|.+|.++|+|+++|.|++||+|++|||+++.++++++++++|+++.+.|+|+|.|.
T Consensus        41 ~~i~I~~V~~gs~A~~~g~l~~GD~Il~VNg~~v~~~~~~~~~~ll~~~~~~v~L~v~P~  100 (100)
T d1va8a1          41 DSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMHGTLTFVLIPS  100 (100)
T ss_dssp             SSEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCEEEEEEEECC
T ss_pred             CCEEEEEECCCChhhhhcccCccCEEEEECCEEEcCCCHHHHHHHHHcCCCeEEEEEEcC
Confidence            478999999999999999779999999999999999999999999999888999999873

>d1rgwa_ b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Zasp (Cypher, Oracle 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=2e-12  Score=95.00  Aligned_cols=60  Identities=23%  Similarity=0.369  Sum_probs=55.7

Q ss_pred             cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCCc
Q psy16075          3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQ   63 (241)
Q Consensus         3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~q   63 (241)
                      +++|..|.+++||+++|| ++||+|++|||+++.+++|++++++|+++...++|+|.+..+
T Consensus        26 ~v~V~~v~~gs~A~~~~L-~~GD~Il~VNg~~v~~~s~~ev~~~i~~~~~~v~L~V~R~~r   85 (85)
T d1rgwa_          26 PLTISRITPGSKAAQSQL-SQGDLVVAIDGVNTDTMTHLEAQNKIKSASYNLSLTLQKSKR   85 (85)
T ss_dssp             CCBEEEECTTSHHHHSSC-CCCSBEEEETTEECTTCCHHHHHHHHTTCSSCEEEEEESCCC
T ss_pred             CEEEEEecCCChHHhCCC-CCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEECCC
Confidence            589999999999999886 999999999999999999999999999888889999988653

>d1whaa_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=1.5e-12  Score=99.07  Aligned_cols=60  Identities=33%  Similarity=0.597  Sum_probs=56.0

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecC
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA   61 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~   61 (241)
                      .|+||.+|.+++||+++|.|++||+|++|||+++.+++|++++++|+.+...|.|+|.+.
T Consensus        38 ~gi~V~~v~~gs~A~~~G~L~~GD~Il~INg~~v~~~~~~ev~~~l~~~~~~v~l~v~R~   97 (105)
T d1whaa_          38 AGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLLTAASPTIALLLERE   97 (105)
T ss_dssp             CSCEEEECCTTSSHHHHSSCCTTCEEEEESSCBCTTCCHHHHHHHHTSCCSCEEEEEEEC
T ss_pred             CCEEEEEEcCCCchhhcCCccCCCEEEEECCEEcCCCcHHHHHHHHHcCCCeEEEEEEEC
Confidence            369999999999999999779999999999999999999999999998877899999874

>d1n7ea_ b.36.1.1 (A:) Glutamate receptor-interacting protein 1, GRIP1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor-interacting protein 1, GRIP1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.31  E-value=3.9e-12  Score=95.20  Aligned_cols=61  Identities=30%  Similarity=0.526  Sum_probs=56.5

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCC
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPAN   62 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~   62 (241)
                      .++||.+|.++++|+++|.|++||+|++|||+++.++++++++++|+++.+.+.|+|.+..
T Consensus        28 ~~v~I~~I~~g~~A~~~g~L~~GD~Il~INg~~v~~~~~~ev~~~l~~~~~~v~l~v~r~~   88 (95)
T d1n7ea_          28 DPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQT   88 (95)
T ss_dssp             SCCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEEEEECCC
T ss_pred             CCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECC
Confidence            3689999999999999997799999999999999999999999999988888999998753

>d2fnea1 b.36.1.1 (A:1955-2042) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=4.5e-12  Score=93.62  Aligned_cols=57  Identities=19%  Similarity=0.399  Sum_probs=54.3

Q ss_pred             cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEe
Q psy16075          3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK   59 (241)
Q Consensus         3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~   59 (241)
                      ++||.+|.++|+|+++|.|++||+|++|||+++.+++|++++++|+++.+.++|+|+
T Consensus        31 ~i~I~~v~~~g~A~~~g~l~~GD~Il~INg~~v~~~~~~~v~~~l~~~~~~v~L~Vl   87 (88)
T d2fnea1          31 PIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVL   87 (88)
T ss_dssp             EEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSSEEEEEE
T ss_pred             CEEEEEEcCCChHHHhCCCcCCcEEEEECCEECCCCCHHHHHHHHHcCCCcEEEEEE
Confidence            689999999999999997799999999999999999999999999999889999886

>d1q3oa_ b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Shank1, PDZ domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.29  E-value=4.1e-12  Score=95.52  Aligned_cols=58  Identities=28%  Similarity=0.383  Sum_probs=54.6

Q ss_pred             cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecC
Q psy16075          3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA   61 (241)
Q Consensus         3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~   61 (241)
                      +++|..|.++|||+++|+ ++||+|++|||+++.+++|++++++|+.++..++|+|.+.
T Consensus        44 ~~~I~~v~~g~~A~~aGL-~~GD~Il~INg~~v~~~~h~evv~~ik~~~~~v~L~V~~~  101 (104)
T d1q3oa_          44 LQYLESVDEGGVAWRAGL-RMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMV  101 (104)
T ss_dssp             SEEEEEECTTSHHHHTTC-CTTCEEEEETTEECTTCCHHHHHHHHHHTTTEEEEEEEEE
T ss_pred             CEEEEEECCCCHHHHcCC-CCCCEEEEEcCeEcCCCCHHHHHHHHHcCCCeEEEEEEec
Confidence            689999999999999996 9999999999999999999999999998888899998864

>d1y7na1 b.36.1.1 (A:12-90) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=4.6e-12  Score=92.31  Aligned_cols=57  Identities=25%  Similarity=0.488  Sum_probs=53.6

Q ss_pred             EEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecC
Q psy16075          4 IFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA   61 (241)
Q Consensus         4 IfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~   61 (241)
                      -+|.+|.+||+|+++|+ ++||+|++|||+++.+++|++++++|+.+.+.++|+|.|.
T Consensus        22 g~V~~V~~gs~A~~~gL-~~GD~Il~INg~~v~~~~~~~~~~ll~~~~~~v~l~viP~   78 (79)
T d1y7na1          22 GIICSLMRGGIAERGGV-RVGHRIIEINGQSVVATPHEKIVHILSNAVGEIHMKTMPA   78 (79)
T ss_dssp             TEEEEECTTSHHHHHTC-CSSCEEEEETTEECTTSCHHHHHHHHHHCCEEEEEEEECC
T ss_pred             CEEEEEcCCCHHHHCCC-CCCCEEEEECCEEeCCCCHHHHHHHHHcCCCEEEEEEEcC
Confidence            47999999999999986 9999999999999999999999999998888999999885

>d1ujua_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=6.3e-13  Score=102.00  Aligned_cols=60  Identities=30%  Similarity=0.427  Sum_probs=55.6

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecC
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA   61 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~   61 (241)
                      .|+||..|.+++||+++|.|++||+|++|||++|.+++|++++++|+.+...|+|+|.+.
T Consensus        44 ~gi~I~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~t~~ea~~~lk~~~~~v~L~V~r~  103 (111)
T d1ujua_          44 EGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQLLRSVGDTLTVLVCDG  103 (111)
T ss_dssp             CCCEEEEECTTSHHHHHSSCCTTCBCCBBSSCBCTTSCHHHHHHHHSSCSSEEEECCCCC
T ss_pred             CCEEEEEECCCChHHHcCCCccceeeeeeCCcccCCCCHHHHHHHHHcCCCeEEEEEEEC
Confidence            479999999999999999779999999999999999999999999998777888888764

>d1x5qa1 b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=6.1e-12  Score=94.13  Aligned_cols=58  Identities=31%  Similarity=0.526  Sum_probs=54.5

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEec
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKP   60 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p   60 (241)
                      .|+||..|.++|||+++|| ++||+|++|||+++.+++|.+++.+|++.+..++|+|.|
T Consensus        39 ~~i~V~~V~~gg~A~~~GL-~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~l~v~R   96 (97)
T d1x5qa1          39 EGIFISRVSEEGPAARAGV-RVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRVWR   96 (97)
T ss_dssp             CSEEEEEECTTSHHHHHTC-CTTCEEEEETTEECTTCCHHHHHHHHHSCCSEEEEEEEE
T ss_pred             CCEEEEEECCCChhHhhcc-cCCCEEEEECCEECCCCCHHHHHHHHhCCCCEEEEEEEE
Confidence            4799999999999999995 999999999999999999999999999877789999986

>d2f0aa1 b.36.1.1 (A:251-342) Segment polarity protein dishevelled homolog Dvl-2 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Segment polarity protein dishevelled homolog Dvl-2
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.28  E-value=7.3e-12  Score=93.33  Aligned_cols=60  Identities=25%  Similarity=0.417  Sum_probs=54.2

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhC---CCcEEEEEecC
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVAN---SSNLIITVKPA   61 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKss---sg~VtLtV~p~   61 (241)
                      .|+||.+|.++|||+++|.|++||+|++|||+++.+++|++++++|+..   .+.+.|+|.+.
T Consensus        29 ~~i~I~~I~~gg~A~~~G~L~~GD~Il~VNg~~l~~~s~~eav~llk~~~~~~~~v~L~V~R~   91 (92)
T d2f0aa1          29 GGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMSNDDAVRVLRDIVHKPGPIVLTVAKL   91 (92)
T ss_dssp             CCEEEEEEBTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHHHHSSSCEEEEEECC
T ss_pred             CCEEEEEECCCCcHHHcCCCCCccEEEEECCEECCCCCHHHHHHHHHhccCCCCcEEEEEEeC
Confidence            4899999999999999998899999999999999999999999999864   44688888763

>d1v62a_ b.36.1.1 (A:) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=5.8e-12  Score=97.31  Aligned_cols=62  Identities=24%  Similarity=0.413  Sum_probs=57.1

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCCc
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQ   63 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~q   63 (241)
                      +|+||.+|.++++|+++|.|++||+|++|||+++.+++|++++++|+.....+.|+|.+..+
T Consensus        42 ~gi~V~~I~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~~v~~~l~~~~~~v~l~v~~~~~  103 (117)
T d1v62a_          42 SVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLLASISEKVRLEILPVPQ  103 (117)
T ss_dssp             CEEEEEECCTTSHHHHHTCCCTTCBEEEETTEETTSCCHHHHHHHHHSCSSEEEEEECCBTT
T ss_pred             CCEEEEEECCCCHHHHcCCCChhheeeeECCEecCCCCHHHHHHHHHcCCCcEEEEEEECCC
Confidence            57999999999999999977999999999999999999999999999887789999987543

>d1ujda_ b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA0559
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=5.8e-12  Score=97.73  Aligned_cols=59  Identities=36%  Similarity=0.583  Sum_probs=55.5

Q ss_pred             cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecC
Q psy16075          3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA   61 (241)
Q Consensus         3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~   61 (241)
                      |+||..|.++++|+++|.|++||+|++|||+++.+++|++++++|+++...++|+|.+.
T Consensus        50 gi~I~~V~~gs~A~~~G~L~~GD~Il~INg~~v~~~s~~e~~~~i~~~~~~v~l~v~r~  108 (117)
T d1ujda_          50 GAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQSIISQQSGEAEICVRLD  108 (117)
T ss_dssp             EEEEEEECTTCHHHHHSSCCTTCEEEEETTEECTTCCHHHHHHHHSCCSSCEEEEEESS
T ss_pred             CEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCcHHHHHHHHHcCCCeEEEEEEEC
Confidence            68999999999999999779999999999999999999999999998877899999764

>d1r6ja_ b.36.1.1 (A:) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=5.4e-12  Score=92.62  Aligned_cols=57  Identities=28%  Similarity=0.406  Sum_probs=53.2

Q ss_pred             EEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecC
Q psy16075          4 IFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA   61 (241)
Q Consensus         4 IfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~   61 (241)
                      -+|.+|.+++||+++|+ ++||+|++|||+++.+++|++++++|++++..++|+|.|.
T Consensus        25 g~V~~v~~g~~A~~~Gl-~~GD~Il~INg~~v~~~t~~~~~~ll~~~~~~v~l~v~p~   81 (82)
T d1r6ja_          25 GKITSIVKDSSAARNGL-LTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA   81 (82)
T ss_dssp             TEEEEECTTSHHHHHTC-CSSEEEEEETTEECTTCCHHHHHHHHHHSCSEEEEEEEEC
T ss_pred             EEEEEECCCChHHhcCc-CCCCEEEEeCCeEEeeCCHHHHHHHHHcCCCEEEEEEEcC
Confidence            36899999999999995 9999999999999999999999999998888999999874

>d1tp5a1 b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.27  E-value=7.5e-12  Score=95.11  Aligned_cols=61  Identities=30%  Similarity=0.435  Sum_probs=56.4

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCC
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPAN   62 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~   62 (241)
                      .|+||..|.++|+|+++|.|++||+|++|||+++.+++|++++++|+++...++|+|.+..
T Consensus        33 ~gv~V~~v~~gs~A~~~G~l~~GD~Il~INg~~v~~~~~~ev~~~l~~~~~~v~L~v~~~~   93 (102)
T d1tp5a1          33 EGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKP   93 (102)
T ss_dssp             CCEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHHTSCSEEEEEEEECH
T ss_pred             CCEEEEEecCCchHHHcCCCcccCEEEEECCeEcCCCCHHHHHHHHHcCCCeEEEEEEECC
Confidence            4899999999999999997799999999999999999999999999987778999987653

>d1qaua_ b.36.1.1 (A:) Neuronal nitric oxide synthase, NNOS {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neuronal nitric oxide synthase, NNOS
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.26  E-value=6e-12  Score=95.40  Aligned_cols=57  Identities=30%  Similarity=0.478  Sum_probs=51.4

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEE
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITV   58 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV   58 (241)
                      +|+||..|.++|||+++|.|++||+|++|||+++.+++|++++++|+.....+.+.+
T Consensus        26 ~~i~I~~v~~ggpA~~~G~L~~GD~Il~INg~~v~~~s~~e~~~~l~~~~~~~~~~l   82 (112)
T d1qaua_          26 PPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVL   82 (112)
T ss_dssp             SCEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTSCHHHHHHHHHHSCSSSEEEE
T ss_pred             CCEEEEEEcCCCHHHHhhhcccccEeEEECCcCccCCCHHHHHHHHHcCCCCcEEEE
Confidence            479999999999999999779999999999999999999999999998876655443

>d1x45a1 b.36.1.1 (A:8-92) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=8.5e-12  Score=92.11  Aligned_cols=57  Identities=23%  Similarity=0.543  Sum_probs=51.3

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCC--cEEEEE
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSS--NLIITV   58 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg--~VtLtV   58 (241)
                      +++||.+|.++|||+++|.|++||+|++|||+++.+++|++++++|+++..  .++|+|
T Consensus        26 ~~i~I~~v~~gg~A~~~G~l~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~~~v~L~V   84 (85)
T d1x45a1          26 PTVIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQSRVKLNI   84 (85)
T ss_dssp             CCCEEEEECTTCHHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTCSEEEEEE
T ss_pred             CCEEEEEeCCCCHHHHcCCCCcCCEEEEECCEECCCCCHHHHHHHHHcCCCCCEEEEEE
Confidence            579999999999999999779999999999999999999999999997755  355555

>d1m5za_ b.36.1.1 (A:) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.26  E-value=1e-11  Score=92.27  Aligned_cols=59  Identities=19%  Similarity=0.361  Sum_probs=55.2

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecC
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA   61 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~   61 (241)
                      .|+||..|.++|+|+++|| ++||+|++|||+++.++++.+++.+|+..+..++|+|.+.
T Consensus        32 ~g~~V~~V~~~g~A~~~gL-~~GD~Il~VNg~~v~~~t~~~~~~~l~~~~~~v~L~v~R~   90 (91)
T d1m5za_          32 KGVYVKNIRPAGPGDLGGL-KPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISRN   90 (91)
T ss_dssp             SCEEEEEECTTSHHHHHTC-CTTCEEEEETTEECTTCCHHHHHHHHHTSTTEEEEEEEEC
T ss_pred             CCEEEEEECCCChhHhCcC-CCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEEEEEEEC
Confidence            4899999999999999995 9999999999999999999999999998888899999764

>d2f5ya1 b.36.1.1 (A:19-95) Regulator of G-protein signaling 3, RGS3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulator of G-protein signaling 3, RGS3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=1.1e-11  Score=89.61  Aligned_cols=57  Identities=25%  Similarity=0.263  Sum_probs=53.7

Q ss_pred             cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEec
Q psy16075          3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKP   60 (241)
Q Consensus         3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p   60 (241)
                      +++|.+|.++|||+++|+ ++||+|++|||+++.++++++++.++++....++|+|.|
T Consensus        19 ~~~V~~V~~gspA~~aGL-~~GD~Il~Vng~~v~~~~~~~v~~~i~~~~~~v~L~v~R   75 (77)
T d2f5ya1          19 PVRVQAVDSGGPAERAGL-QQLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILLVWR   75 (77)
T ss_dssp             SCEEEEECTTSHHHHHTC-CTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEEEEE
T ss_pred             CEEEEEECCCCHHHHcCC-CCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEEEEEEE
Confidence            579999999999999996 999999999999999999999999999888889998876

>d1fc6a3 b.36.1.3 (A:157-248) Photosystem II D1 C-terminal processing protease {Algae (Scenedesmus obliquus) [TaxId: 3088]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Tail specific protease PDZ domain
domain: Photosystem II D1 C-terminal processing protease
species: Algae (Scenedesmus obliquus) [TaxId: 3088]

Probab=99.25  E-value=1e-11  Score=92.18  Aligned_cols=68  Identities=24%  Similarity=0.463  Sum_probs=58.7

Q ss_pred             cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCC-cEEEEEecCCcc---ccccccc
Q psy16075          3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSS-NLIITVKPANQR---ANMSVPR   71 (241)
Q Consensus         3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg-~VtLtV~p~~q~---~~~~~~R   71 (241)
                      +++|..|.++|||+++|+ ++||+|++|||+++.++++++++++|++..+ .|.|+|.+.+..   ..+++.|
T Consensus        20 ~v~V~~v~~gsPA~~AGl-~~GD~I~~Ing~~v~~~~~~~~~~~l~g~~g~~v~l~i~R~g~~~~~~~~~l~R   91 (92)
T d1fc6a3          20 DVVVLTPAPGGPAEKAGA-RAGDVIVTVDGTAVKGMSLYDVSDLLQGEADSQVEVVLHAPGAPSNTRTLQLTR   91 (92)
T ss_dssp             CEEEEEECTTSHHHHTTC-CTTCEEEEETTEECTTCCHHHHHHHHCBSTTCEEEEEEEETTEEEEEEEEEEEC
T ss_pred             eEEEEEecCCCChhHHhh-HcCCcceecCceEcCCCCHHHHHHHhhCCCCCEEEEEEEECCCcCcEEEEEEEe
Confidence            689999999999999996 9999999999999999999999999986655 699999987643   3455555

>d1ueqa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=2e-11  Score=95.46  Aligned_cols=60  Identities=15%  Similarity=0.305  Sum_probs=54.3

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCC--CcEEEEEecC
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANS--SNLIITVKPA   61 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsss--g~VtLtV~p~   61 (241)
                      .+++|.+|.++++|+++|.|++||+|++|||++|.+++|++++++|+...  ..|.|+|.+.
T Consensus        44 ~~i~I~~v~~gg~A~~~g~L~~GD~Il~INg~~v~~~t~~eav~~l~~~~~g~~v~L~v~R~  105 (123)
T d1ueqa_          44 EFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKLFQSVPIGQSVNLVLCRG  105 (123)
T ss_dssp             CCCEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTSCHHHHHHHHHTSCTTCEEEEEEEES
T ss_pred             CCEEEEEECCCCHHHHcCCCeeCCEEEEECCEECCCCCHHHHHHHHHcCCCCCEEEEEEEcC
Confidence            36899999999999999977999999999999999999999999999764  3588888874

>d1uf1a_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=2.4e-11  Score=95.68  Aligned_cols=58  Identities=40%  Similarity=0.613  Sum_probs=52.9

Q ss_pred             cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCC
Q psy16075          3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPAN   62 (241)
Q Consensus         3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~   62 (241)
                      |+||..|.++++|+++|| ++||+|++|||+++.+++|++++++|+. .+.+.++|.+..
T Consensus        47 gv~V~~V~~g~~A~~~gL-~~GD~Il~INg~~v~~~s~~evv~~lr~-~~~v~l~v~~~~  104 (128)
T d1uf1a_          47 GIYITGVDPGSEAEGSGL-KVGDQILEVNGRSFLNILHDEAVRLLKS-SRHLILTVKDVG  104 (128)
T ss_dssp             CCEEEEECTTCHHHHHTC-CTTCEEEEETTEECSSCCHHHHHHHHTT-CSEEEEEEECCS
T ss_pred             CEEEEEECCCChHHhcCC-CCCCEEEEECCEECCCCCHHHHHHHHhc-CCcEEEEEEECC
Confidence            799999999999999995 9999999999999999999999999985 457888887754

>d1v5qa_ b.36.1.1 (A:) Glutamate receptor interacting protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.22  E-value=8.2e-12  Score=97.76  Aligned_cols=57  Identities=23%  Similarity=0.400  Sum_probs=51.2

Q ss_pred             cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEe
Q psy16075          3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVK   59 (241)
Q Consensus         3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~   59 (241)
                      ++||..|.+++||+++|.|++||+|++|||+++.+++|++++++|+.+...+.|+|.
T Consensus        46 ~i~V~~I~~gg~A~~~G~L~~GD~Il~INg~~v~~~~~~e~~~~lk~~~~~~~l~l~  102 (122)
T d1v5qa_          46 PPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTLE  102 (122)
T ss_dssp             CCEEEEECTTSHHHHSCCCCTTCCEEEETTEESSSSCHHHHHHHHHHHTTTTCEEEE
T ss_pred             CeEEEEECCCCHHHHhCCCCcCCEEEEECCCcCCCCCHHHHHHHHHcCCCceEEEEE
Confidence            589999999999999998899999999999999999999999999987665555444

>d1x5na1 b.36.1.1 (A:8-108) Harmonin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=9.5e-12  Score=94.53  Aligned_cols=61  Identities=33%  Similarity=0.647  Sum_probs=53.9

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCCcc
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQR   64 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~q~   64 (241)
                      +|+||..|.+++||+++|| ++||+|++|||+++.+++|++++++|+.+. .++++|.+....
T Consensus        34 ~gi~V~~V~~gs~A~~~gL-~~GD~Il~VNg~~v~~~~~~~v~~~lk~~~-~~~l~v~~~~g~   94 (101)
T d1x5na1          34 PGIFISHVKPGSLSAEVGL-EIGDQIVEVNGVDFSNLDHKEAVNVLKSSR-SLTISIVAAAGR   94 (101)
T ss_dssp             CSEEEEEECTTSTTTTTTC-CTTCEEEEETTEETTSCCTTHHHHHHHHCS-SEEEEECSSTTT
T ss_pred             CCEEEEEECCCChHHhCCC-CcccEEEEECCEECCCCCHHHHHHHHhCCC-CEEEEEEECCCC
Confidence            5899999999999999996 999999999999999999999999998754 677877765433

>d1vb7a_ b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ-LIM protein mystique
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.22  E-value=9.8e-12  Score=92.94  Aligned_cols=59  Identities=17%  Similarity=0.277  Sum_probs=55.0

Q ss_pred             cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCC
Q psy16075          3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPAN   62 (241)
Q Consensus         3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~   62 (241)
                      +++|..|.+++||+++|| ++||+|++|||+++.+++|++++++|+.+...|+|+|.+..
T Consensus        31 ~i~V~~v~~gs~A~~~gL-~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~L~V~R~~   89 (94)
T d1vb7a_          31 PIIVTKVTERGKAEAADL-RPGDIIVAINGQSAENMLHAEAQSKIRQSASPLRLQLDRSS   89 (94)
T ss_dssp             EEECCCBCTTSSHHHHTC-CTTCEEEEETTEECTTCCHHHHHHHHHTCCSSEEEEEECCC
T ss_pred             CEEEEeccCCChhhhCCC-CCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECC
Confidence            589999999999999996 99999999999999999999999999988889999998753

>d1w9ea1 b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=2.8e-11  Score=88.45  Aligned_cols=58  Identities=28%  Similarity=0.439  Sum_probs=52.6

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCC-cEEEEEec
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSS-NLIITVKP   60 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg-~VtLtV~p   60 (241)
                      .|++|.+|.++|||+++|+ ++||+|++|||+++.++++++++++|+...+ .+.|+|.+
T Consensus        25 ~g~~V~~v~~gspA~~aGL-~~GD~Il~Vng~~v~~~~~~~v~~~lk~~~~~~v~l~v~~   83 (85)
T d1w9ea1          25 NGIFVQLVQANSPASLVGL-RFGDQVLQINGENCAGWSSDKAHKVLKQAFGEKITMTIRD   83 (85)
T ss_dssp             TEEEEEEECTTSHHHHTTC-CTTCEEEEETTEECTTCCHHHHHHHHHHCCSSEEEEEEEC
T ss_pred             CCEEEEEECCCCHHHHcCC-CCccEEEEECCEEeCCCCHHHHHHHHhcCCCCEEEEEEeC
Confidence            4799999999999999996 9999999999999999999999999987765 57787764

>d1wi2a_ b.36.1.1 (A:) PDZ domain containing protein 11, Pdzk11 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ domain containing protein 11, Pdzk11
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.21  E-value=2.5e-11  Score=92.06  Aligned_cols=58  Identities=26%  Similarity=0.429  Sum_probs=52.6

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecC
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA   61 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~   61 (241)
                      .|+||..|.+++||+++|| ++||+|++|||+++.+++|++++++|+.+ ..+.|+|++.
T Consensus        41 ~gi~V~~V~~~s~A~~~GL-~~GD~Il~VNg~~v~~~~~~ev~~llk~~-~~v~l~V~~~   98 (104)
T d1wi2a_          41 LGIFISKVIPDSDAHRAGL-QEGDQVLAVNDVDFQDIEHSKAVEILKTA-REISMRVRFF   98 (104)
T ss_dssp             CCCEEEEECTTSHHHHHTC-CTTCEEEEETTEECSSCCHHHHHHHHHHS-SSEEEEEECC
T ss_pred             CCEEEEEECCCChhHhccc-ccCCEEEEECCEECCCCCHHHHHHHHhcC-CeEEEEEEEC
Confidence            4789999999999999995 99999999999999999999999999865 4788888653

>d2h3la1 b.36.1.1 (A:1310-1412) Erbin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Erbin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=1.8e-11  Score=93.06  Aligned_cols=58  Identities=21%  Similarity=0.385  Sum_probs=53.5

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecC
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA   61 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~   61 (241)
                      +||||..|.+++||+++  |++||+|++|||+++.+++|++++++|++++..+.|+|.+.
T Consensus        43 ~gI~I~~V~~gs~A~~~--L~~GD~Il~VNg~~v~~~t~~eav~~l~~~~~~v~L~V~R~  100 (103)
T d2h3la1          43 DGIFVTRVQPEGPASKL--LQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVRE  100 (103)
T ss_dssp             CSEEEEEECTTSTTTTT--CCTTCEEEEETTEECSSCCHHHHHHHHHHCCSEEEEEEEEE
T ss_pred             CCEEEEEeCCCChHHhc--cCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEEE
Confidence            47999999999999874  59999999999999999999999999999888899998763

>d1wi4a1 b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntaxin binding protein 4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.20  E-value=1.8e-11  Score=91.79  Aligned_cols=59  Identities=22%  Similarity=0.407  Sum_probs=52.2

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCC----CcEEEEEec
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANS----SNLIITVKP   60 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsss----g~VtLtV~p   60 (241)
                      +++||..|.++|+|+++|.|++||+|++|||+++.++++++++++|+.+.    ..+.+.+.+
T Consensus        34 ~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~ea~~~l~~~~~~~~~~vel~~~R   96 (96)
T d1wi4a1          34 PLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSIITRAKLRSESPWEIAFIR   96 (96)
T ss_dssp             SSEEEEEECTTSHHHHHCSCCTTCBEEEETTSCCTTCCHHHHHHHHHHSCCSSSSCEEEEEEC
T ss_pred             CCEEEEEEeCCCccccCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhccCCCCCeEEEEEEC
Confidence            47899999999999999977999999999999999999999999999863    347776653

>d1wf7a_ b.36.1.1 (A:) Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Enigma homolog ENH
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.19  E-value=2.3e-11  Score=92.34  Aligned_cols=60  Identities=27%  Similarity=0.378  Sum_probs=55.1

Q ss_pred             cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCCc
Q psy16075          3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQ   63 (241)
Q Consensus         3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~q   63 (241)
                      +++|..|.++++|++++| ++||+|++|||+++.+++|++++++|+.....|.|+|.+...
T Consensus        30 ~v~V~~v~~g~~a~~~~L-~~GD~Il~INg~~v~~~t~~eav~li~~~~~~v~L~v~R~~~   89 (103)
T d1wf7a_          30 PLTISSLKDGGKASQAHV-RIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRASA   89 (103)
T ss_dssp             EEEECCCCTTCHHHHTTC-CTTCBEEEETTEECSSCCHHHHHHHHHHCSSEEEEEECCCSC
T ss_pred             CEEEEecCCCChHHHCCC-CCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCC
Confidence            589999999999998776 999999999999999999999999999888889999987643

>d2cssa1 b.36.1.1 (A:8-115) Regulating synaptic membrane exocytosis protein 1, RIMS1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulating synaptic membrane exocytosis protein 1, RIMS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=2.3e-11  Score=93.05  Aligned_cols=58  Identities=33%  Similarity=0.551  Sum_probs=52.7

Q ss_pred             cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCC--CcEEEEEec
Q psy16075          3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANS--SNLIITVKP   60 (241)
Q Consensus         3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsss--g~VtLtV~p   60 (241)
                      |+||..|.++|+|+++|.|++||+|++|||+++.+++|++++++|+.+.  ..+.|.|.+
T Consensus        48 gi~V~~v~~gg~A~~~g~L~~GD~Il~VNg~~~~~~t~~ea~~~l~~~~~~~~v~l~v~R  107 (108)
T d2cssa1          48 GAFITKVKKGSLADVVGHLRAGDEVLEWNGKPLPGATNEEVYNIILESKSEPQVEIIVSR  107 (108)
T ss_dssp             EEEEEEECTTSHHHHTSCCCTTCEEEEESSCBCTTSCHHHHHHHHHHGGGCSCEEEEEEE
T ss_pred             CEEEEEECCCCchhhcCCCCcCCEEEEECCEECCCCCHHHHHHHHHhCCCCCEEEEEEeC
Confidence            7999999999999999977999999999999999999999999998754  368887765

>d1x6da1 b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=1.4e-11  Score=93.61  Aligned_cols=59  Identities=22%  Similarity=0.363  Sum_probs=53.2

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEec
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKP   60 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p   60 (241)
                      .++||.+|.+||+|+++|.|++||+|++|||+++.+++|++++++|+.+...+.+++.+
T Consensus        35 ~~i~V~~v~~gs~A~~~g~L~~GD~Il~VNg~~v~~~~~~ea~~~l~~~~~~~~l~v~~   93 (107)
T d1x6da1          35 KVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAILRQAREPRQAVIVT   93 (107)
T ss_dssp             SSCEEEEECSSSHHHHHTSSCTTCBCCEETTEECSSCCHHHHHHHHHHTTSSSEEEEEE
T ss_pred             CCEEEEEECCCCHHHHcCCCCcCCEEEEECCEecCCCCHHHHHHHHHcCCCCEEEEEEE
Confidence            47899999999999999977999999999999999999999999999888776665543

>d1uita_ b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Discs large 5 protein KIAA0583
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=3.6e-11  Score=92.89  Aligned_cols=60  Identities=25%  Similarity=0.432  Sum_probs=55.1

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCC
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPAN   62 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~   62 (241)
                      .|+||..|.+++||+++|| ++||+|++|||+++.++++++++++|+.....|.|+|.+..
T Consensus        42 ~gi~V~~V~~gs~A~~~gL-~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~~v~l~v~~~p  101 (117)
T d1uita_          42 GGIYVSKVTVGSIAHQAGL-EYGDQLLEFNGINLRSATEQQARLIIGQQCDTITILAQYNP  101 (117)
T ss_dssp             SCEEEEEECTTSHHHHHTC-CTTCEECEETTEETTTCCHHHHHHHTTSCCSEEEEEECCCS
T ss_pred             CCEEEEEEecCChHHhCCC-CCCCEeeeECCcccCCCCHHHHHHHHHCCCCeEEEEEEECC
Confidence            4799999999999999996 99999999999999999999999999988778999887643

>d1vaea_ b.36.1.1 (A:) Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Rhophilin-2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.17  E-value=2.2e-11  Score=93.61  Aligned_cols=57  Identities=14%  Similarity=0.193  Sum_probs=51.6

Q ss_pred             cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCC-cEEEEEec
Q psy16075          3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSS-NLIITVKP   60 (241)
Q Consensus         3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg-~VtLtV~p   60 (241)
                      +++|..|.+++||+++|| ++||+|++|||++|.+++|++++++|+...+ .|.|+|.+
T Consensus        37 ~v~V~~V~~~spA~~~GL-~~GD~Il~INg~~v~~~~~~ev~~llk~~~~~~v~l~v~~   94 (111)
T d1vaea_          37 PVQVHFLDPHCSASLAGA-KEGDYIVSIQGVDCKWLTVSEVMKLLKSFGGEEVEMKVVS   94 (111)
T ss_dssp             SCEECCCCTTSSHHHHHC-CTTCEEEEETTEECSSCCHHHHHHHHHHTTTSEECEEEEC
T ss_pred             cEEEEEEcCCChHHhccc-CcccEEEEECCEEcCCCCHHHHHHHHHcCCCCeEEEEEEC
Confidence            589999999999999995 9999999999999999999999999998755 57787764

>d1wfva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=1.5e-11  Score=93.51  Aligned_cols=60  Identities=18%  Similarity=0.387  Sum_probs=55.8

Q ss_pred             cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCC
Q psy16075          3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPAN   62 (241)
Q Consensus         3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~   62 (241)
                      +++|.+|.++++|+++|.|++||+|++|||+++.++++++++++|+.....|.|+|.+..
T Consensus        37 ~i~I~~v~~gg~A~~~g~L~~GD~Il~INg~~v~~~s~~ev~~~l~~~~~~v~l~v~R~~   96 (103)
T d1wfva_          37 DLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIKSGGRRVRLLLKRGT   96 (103)
T ss_dssp             EEECCCBCTTSHHHHHCSSCTTCEEEEETTEECSSCCHHHHHHHHHHHCSEECEEEECTT
T ss_pred             CEEEEEEcCCChHHhcCCCCCCCEEEEECCEECCCCcHHHHHHHHHcCCCEEEEEEEECC
Confidence            689999999999999997799999999999999999999999999988778999998753

>d1i16a_ b.36.1.2 (A:) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=8.6e-12  Score=97.61  Aligned_cols=59  Identities=19%  Similarity=0.335  Sum_probs=54.0

Q ss_pred             cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCC-cEEEEEecC
Q psy16075          3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSS-NLIITVKPA   61 (241)
Q Consensus         3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg-~VtLtV~p~   61 (241)
                      |+||.+|.+||+|+++|.|++||+|++|||+++.+++|++++++|+.... .|.|+|.+.
T Consensus        58 ~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~~~~~t~~eav~~l~~~~~~~v~l~v~r~  117 (130)
T d1i16a_          58 PLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVIRRK  117 (130)
T ss_dssp             CCEEEEECSSCCCSSSCCCCTTCCEEECSSCBGGGSCHHHHHHHHHTSCSSEEEEEEEEE
T ss_pred             CEEEEEECCCChHHhcCCcccCceeeeECCeecCCCcHHHHHHHHHcCCCCeEEEEEEcC
Confidence            68999999999999999779999999999999999999999999997654 688888754

>d1uepa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=2.1e-11  Score=92.33  Aligned_cols=58  Identities=34%  Similarity=0.489  Sum_probs=52.4

Q ss_pred             cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCC--CcEEEEEec
Q psy16075          3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANS--SNLIITVKP   60 (241)
Q Consensus         3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsss--g~VtLtV~p   60 (241)
                      +++|..|.+++||+++|.|++||+|++|||+++.+++|++++++|+.+.  ..|.|+|.+
T Consensus        35 ~i~V~~v~~g~~A~~~G~L~~GD~Il~VNg~~v~~~t~~e~~~~l~~~~~~~~v~l~v~r   94 (103)
T d1uepa_          35 PILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLMHHAARNGQVNLTVRR   94 (103)
T ss_dssp             CCBEEEECTTSTTGGGTCCCTTCEEEEETTEECTTSCHHHHHHHHHHHHHHTEEEEEEEE
T ss_pred             cEEEEEECCCChHHHcCCCCcCCEEEEECCEECCCCCHHHHHHHHHhCCCCCEEEEEEEe
Confidence            5899999999999999977999999999999999999999999998764  357787766

>d1v5la_ b.36.1.1 (A:) Alpha-actinin-2 associated LIM protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Alpha-actinin-2 associated LIM protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.14  E-value=2.4e-11  Score=92.53  Aligned_cols=60  Identities=23%  Similarity=0.395  Sum_probs=55.1

Q ss_pred             cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCCc
Q psy16075          3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQ   63 (241)
Q Consensus         3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~q   63 (241)
                      +++|..|.++++|++++| ++||+|++|||+++.+++|++++++|+.....|.|+|.+...
T Consensus        30 ~i~V~~v~~g~~A~~~~L-~~GD~Il~VNg~~v~~~~~~e~v~ll~~~~~~v~l~V~R~~~   89 (103)
T d1v5la_          30 PLVITRITPGSKAAAANL-CPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRAET   89 (103)
T ss_dssp             EEECSCBCTTSTTGGGTC-CTTCBEEEETTEECSSCCHHHHHHHHTTCCSEEECEECCCTT
T ss_pred             CEEEEEccCCChHHhCCC-CCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEECCc
Confidence            689999999999999886 999999999999999999999999999887889999987543

>d1wg6a_ b.36.1.1 (A:) Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.14  E-value=2.7e-11  Score=95.33  Aligned_cols=59  Identities=29%  Similarity=0.490  Sum_probs=54.0

Q ss_pred             cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhC-------CCcEEEEEecC
Q psy16075          3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVAN-------SSNLIITVKPA   61 (241)
Q Consensus         3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKss-------sg~VtLtV~p~   61 (241)
                      ++||..|.++++|+++|.|++||+|++|||+++.+++|++++++|+.+       .+.|+|.|.+.
T Consensus        56 ~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~e~~~~lr~a~~~~~~~~~~V~L~V~R~  121 (127)
T d1wg6a_          56 GIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRSMSMEGNIRGMIQLVILRR  121 (127)
T ss_dssp             EEEEEECCSSSSTHHHHTSCSCCBEEEETTEESTTSCHHHHHHHHHHHHHHHHHHTCEEEEEEEEC
T ss_pred             CEEEEEECCCCchhccCCCCCCCEEEeECCEECCCCCHHHHHHHHHhcccccCCCCCEEEEEEeeC
Confidence            689999999999999997799999999999999999999999999875       45788888874

>d2csja1 b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tjp2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tight junction protein ZO-2, Tjp2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.12  E-value=2.9e-11  Score=91.54  Aligned_cols=58  Identities=29%  Similarity=0.335  Sum_probs=53.0

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecC
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPA   61 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~   61 (241)
                      .|+||.+|.+||||+ ++| ++||+|++|||+++.++++++++++|+++...++|+|.+.
T Consensus        39 ~~i~V~~v~~gs~A~-~~L-~~GD~Il~INg~~v~~~~~~ev~~ll~~~~~~v~l~V~R~   96 (104)
T d2csja1          39 TSIVISDVLPGGPAD-GLL-QENDRVVMVNGTPMEDVLHSFAVQQLRKSGKIAAIVVKRP   96 (104)
T ss_dssp             CBCEEEEECTTSSHH-HHB-CTTCEEEEESSCBCBTCCHHHHHHHHHHSCSEEEEEEEEE
T ss_pred             CCEEEEEECCCChhh-cCC-CCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEeC
Confidence            479999999999997 565 9999999999999999999999999998878899999874

>d1wifa_ b.36.1.1 (A:) hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.10  E-value=5.7e-11  Score=93.57  Aligned_cols=60  Identities=27%  Similarity=0.347  Sum_probs=54.8

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCC--CcEEEEEecC
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANS--SNLIITVKPA   61 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsss--g~VtLtV~p~   61 (241)
                      ++++|.+|.+++||+++|.|++||+|++|||+++.+++|++++++|+...  ..|.|+|.+.
T Consensus        49 ~~i~V~~v~~gg~A~~~G~l~~GD~Il~Ing~~v~~~~~~e~~~llr~~~~g~~v~L~v~R~  110 (126)
T d1wifa_          49 PYLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNITIGTVLQIKAYRG  110 (126)
T ss_dssp             TEEEECCCCTTSSGGGCSSSCTTCBEEEESSSCCTTCCHHHHHHHHTSCCSSCEEEEEEESS
T ss_pred             CcEEEEEECCCChHHHcCCCCCCCEEEEECCEEeEeccHHHHHHHHhCCCCCCEEEEEEEeC
Confidence            46899999999999999977999999999999999999999999999753  4799999886

>d1x5ra1 b.36.1.1 (A:8-106) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=2.7e-11  Score=91.26  Aligned_cols=57  Identities=25%  Similarity=0.471  Sum_probs=50.7

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCC--cEEEEE
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSS--NLIITV   58 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg--~VtLtV   58 (241)
                      .+++|..+.+++||+++|.|++||+|++|||+++.+++|++++++|+++..  .+.|.+
T Consensus        38 ~~~~V~~i~~~s~A~~~G~l~~GD~Il~INg~~v~~~t~~e~~~~lr~~~~~~~l~l~v   96 (99)
T d1x5ra1          38 SPPLVCFIEPDSPAERCGLLQVGDRVLSINGIATEDGTMEEANQLLRDAALAHKVVLEV   96 (99)
T ss_dssp             SCCEEEEECTTSHHHHTSSCCTTCBCSEETTEESTTSBHHHHHHHHHHHHTTTCEEEEE
T ss_pred             CCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCEEEEEE
Confidence            368999999999999999889999999999999999999999999987654  455554

>d1ueza_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=8.7e-11  Score=88.84  Aligned_cols=59  Identities=32%  Similarity=0.532  Sum_probs=52.2

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCC
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPAN   62 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~   62 (241)
                      .++||..|.+++||+++|| ++||+|++|||+++.++++++++++|+.+ +.+.++|.+..
T Consensus        35 ~~i~V~~v~~gg~A~~~gL-~~GD~Il~ING~~v~~~~~~~v~~ll~~~-~~~~l~V~~~~   93 (101)
T d1ueza_          35 VGIYVSLVEPGSLAEKEGL-RVGDQILRVNDKSLARVTHAEAVKALKGS-KKLVLSVYSAG   93 (101)
T ss_dssp             CCEEEEEECTTSHHHHHTC-CSSCCEEEETTEECSSCCHHHHHHHSSSS-SSCCEEECCCC
T ss_pred             CCEEEEEECCCChHHhcCC-CCCcEEEEECCEECCCCCHHHHHHHHhcC-CCEEEEEEECC
Confidence            3789999999999999995 99999999999999999999999999865 46777777643

>d1ufxa_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=9.6e-11  Score=89.01  Aligned_cols=58  Identities=28%  Similarity=0.382  Sum_probs=50.6

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCC-----CcEEEEEe
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANS-----SNLIITVK   59 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsss-----g~VtLtV~   59 (241)
                      ++++|..|.+++||+++|.|++||+|++|||+++.+++|++++++|+.+.     ..+.|.|.
T Consensus        32 ~~~~I~~i~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~a~~~~~~~~~~l~v~   94 (103)
T d1ufxa_          32 PLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAEAFKTKDRDYIDFLVT   94 (103)
T ss_dssp             SSCEEEEECTTSHHHHHCSSCTTCBCCEETTEECTTCBHHHHHHHHHHHHHCSSCSEEEEEEC
T ss_pred             CCEEEEEEcCCcchhhcCCCCCCCEEEEECCEECCCCcHHHHHHHHHHccCCCccceEEEEEe
Confidence            46899999999999999977999999999999999999999999998752     34556554

>d1v6ba_ b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.05  E-value=1.7e-10  Score=89.80  Aligned_cols=59  Identities=22%  Similarity=0.369  Sum_probs=52.8

Q ss_pred             cEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhC----CCcEEEEEecC
Q psy16075          3 GIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVAN----SSNLIITVKPA   61 (241)
Q Consensus         3 GIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKss----sg~VtLtV~p~   61 (241)
                      ++||.+|.++|+|+++|.|++||+|++|||+++.+++|++++++|+.+    ...|+|+|.+.
T Consensus        44 ~v~I~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~~~~~V~L~v~r~  106 (118)
T d1v6ba_          44 KVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGDWIDLVVAVC  106 (118)
T ss_dssp             SEEEEECCTTSHHHHHCSSCTTCEEEEESSCBCTTCBHHHHHHHHHHHHHHTCSEEEEEEECC
T ss_pred             CEEEEEECCCChHHhcCCCCCCCEEeeECCEECCCCcHHHHHHHHHhcccCCCCEEEEEEEeC
Confidence            699999999999999997799999999999999999999999999864    33578888763

>d1ky9b2 b.36.1.4 (B:359-446) Protease Do (DegP, HtrA), C-terminal domains {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease Do (DegP, HtrA), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=99.03  E-value=7.4e-11  Score=86.66  Aligned_cols=63  Identities=16%  Similarity=0.337  Sum_probs=57.2

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCCccccc
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQRANM   67 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~q~~~~   67 (241)
                      .|++|..|.+++||+++|+ ++||.|++|||+++.  +++++.++++..++.+.|+|.|.++...+
T Consensus        25 ~Gv~V~~V~~~spA~~aGl-~~GDvI~~ing~~v~--~~~~~~~~l~~~~~~v~l~v~R~~~~~~l   87 (88)
T d1ky9b2          25 QGVVVNNVKTGTPAAQIGL-KKGDVIIGANQQAVK--NIAELRKVLDSKPSVLALNIQRGDSTIYL   87 (88)
T ss_dssp             SCCCBCCCCSSCTTGGGTC-CSSCEEEEETTEECS--SHHHHHHHTTTCCSCCCEEEESSSCEEEE
T ss_pred             CeEEEEEECCCCHHHHcCC-CCCcEEEEECCEEcC--CHHHHHHHHHhCCCEEEEEEEECCEEEEE
Confidence            4789999999999999997 999999999999998  89999999987777899999998877643

>d1lcya1 b.36.1.4 (A:226-325) Mitochondrial serine protease HtrA2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Mitochondrial serine protease HtrA2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=5e-10  Score=83.01  Aligned_cols=64  Identities=20%  Similarity=0.418  Sum_probs=58.1

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEEEecCCccccccc
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSSNLIITVKPANQRANMSV   69 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg~VtLtV~p~~q~~~~~~   69 (241)
                      .|++|..|.+++||+++|+ ++||.|++|||++|.  +.+++.++++ .+..+.++|.|+++...+.+
T Consensus        31 ~Gv~V~~V~~~spA~~aGl-~~GDiI~~ing~~V~--s~~dl~~~l~-~g~~v~l~v~R~g~~~~~~v   94 (100)
T d1lcya1          31 HGVLIHKVILGSPAHRAGL-RPGDVILAIGEQMVQ--NAEDVYEAVR-TQSQLAVQIRRGRETLTLYV   94 (100)
T ss_dssp             SCEEEEEECTTSHHHHHTC-CTTCEEEEETTEECC--SHHHHHHHHT-TCSSEEEEEEETTEEEEEEE
T ss_pred             CcEEEEEECCCchHhhcCC-CCCcEEEEECCEEcC--CHHHHHHHhc-CCCEEEEEEEECCEEEEEEE
Confidence            4899999999999999998 999999999999999  8999999995 56689999999998877654

>d2cs5a1 b.36.1.1 (A:8-113) Tyrosine-protein phosphatase non-receptor type 4, PTPN4 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tyrosine-protein phosphatase non-receptor type 4, PTPN4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=3.9e-10  Score=85.58  Aligned_cols=60  Identities=30%  Similarity=0.456  Sum_probs=52.1

Q ss_pred             cEEEEEEcCCCHHhhh-CCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCC----CcEEEEEecCC
Q psy16075          3 GIFISRLVPGGLAEST-GLLAVNDEVLEVNGILVAGKSLDQVTDMMVANS----SNLIITVKPAN   62 (241)
Q Consensus         3 GIfIs~VvpGSpAerA-GLLqvGD~ILeINGqsV~glshdeVv~LLKsss----g~VtLtV~p~~   62 (241)
                      ++||.+|.++|||+++ |.|++||+|++|||+++.+++|++++++|+.+.    ..|.|+|.|..
T Consensus        35 ~i~V~~v~~g~~A~~~~g~L~~GD~Il~VNg~~v~~~~~~e~~~ll~~~~~~~~~~v~L~vrp~~   99 (106)
T d2cs5a1          35 PVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELMLLVRPNA   99 (106)
T ss_dssp             EEEEEEECSSSTTTSSSSCCCTTCEEEEETTBCTTSSCHHHHHHHHHHHHHCCSSCEEEEEECCC
T ss_pred             CEEEEEEcCCCcchhccCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCCcEEEEEECCCC
Confidence            6899999999999985 556999999999999999999999999998643    35778887754

>d1wh1a_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=6e-10  Score=86.65  Aligned_cols=58  Identities=22%  Similarity=0.503  Sum_probs=50.6

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCC-CcEEEEEecC
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANS-SNLIITVKPA   61 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsss-g~VtLtV~p~   61 (241)
                      .||||.+|.+++||+++|.|++||+|++|||+++.  ++++++.+++... ..|.|.|.+.
T Consensus        48 ~gi~V~~v~~gg~A~~~g~L~~GD~Il~INg~~v~--~~~~~~~~l~~~~~~~v~l~v~r~  106 (124)
T d1wh1a_          48 IGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQ--NREEAVALLTSEENKNFSLLIARP  106 (124)
T ss_dssp             CCEEEEEECSSSHHHHTCCCCTTCEEEEESSCBCC--SHHHHHHHHTCSSCCSCCEEEEEC
T ss_pred             CCEEEEEECCCChhhhhcccCCCCEEEEECCEECC--CHHHHHHHHhhCCCCcEEEEEEeC
Confidence            47999999999999999977999999999999998  7889999998654 4688888764

>d2z9ia1 b.36.1.4 (A:227-314) Protease PepD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease PepD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.92  E-value=2e-09  Score=78.57  Aligned_cols=64  Identities=19%  Similarity=0.285  Sum_probs=53.7

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCC--CcEEEEEec-CCcccccc
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANS--SNLIITVKP-ANQRANMS   68 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsss--g~VtLtV~p-~~q~~~~~   68 (241)
                      .|++|.+|.+++||+++|+ +.||.|++|||+++.  +..++...+....  ..+.|+|.+ .++..++.
T Consensus        16 ~Gv~V~~V~~~spA~~aGl-~~GD~I~~ing~~i~--~~~~~~~~i~~~~~g~~v~l~v~r~~g~~~~v~   82 (88)
T d2z9ia1          16 LGAKIVEVVAGGAAANAGV-PKGVVVTKVDDRPIN--SADALVAAVRSKAPGATVALTFQDPSGGSRTVQ   82 (88)
T ss_dssp             CSEEEEEECTTSTTGGGTC-CTTCEEEEETTEECC--SHHHHHHHHHTSCTTCEEEEEEEETTTEEEEEE
T ss_pred             CcEEEEEECCCCHHHHcCC-CCCCEEEEeCCCcCC--cHHHHHHHHHhCCCCCEEEEEEEECCCCEEEEE
Confidence            5899999999999999997 999999999999998  7889888886654  368999986 45555443

>d1k32a1 b.36.1.3 (A:763-853) Tricorn protease {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Tail specific protease PDZ domain
domain: Tricorn protease
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.74  E-value=8.7e-09  Score=76.68  Aligned_cols=60  Identities=8%  Similarity=0.117  Sum_probs=52.0

Q ss_pred             CcEEEEEEcCC--------CHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCC-cEEEEEecCCc
Q psy16075          2 PGIFISRLVPG--------GLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANSS-NLIITVKPANQ   63 (241)
Q Consensus         2 pGIfIs~VvpG--------SpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsssg-~VtLtV~p~~q   63 (241)
                      .++.|.+|.+|        |||+++|++++||+|++|||+++.  .++++.++|+...+ .|.|+|.+.+.
T Consensus        12 ~~~~I~~i~~G~~~~~~~~sPa~~aGl~k~GD~I~~IdG~~v~--~~~~~~~~l~g~~G~~V~L~i~R~g~   80 (91)
T d1k32a1          12 DHYVVAKAYAGDYSNEGEKSPIFEYGIDPTGYLIEDIDGETVG--AGSNIYRVLSEKAGTSARIRLSGKGG   80 (91)
T ss_dssp             TEEEEEEECBSCTTSTTCBCGGGGGTCCCTTCEEEEETTEECB--TTBCHHHHHHTTTTSEEEEEEECSSS
T ss_pred             CeEEEEEEecCCCCCcccCChhHhcCCCCCCCEEEEECCEeec--CcceeEEEEecCCCCEEEEEEEeCCC
Confidence            36789999988        999999987899999999999998  56789999988766 58999998654

>d2hgaa1 b.36.1.6 (A:23-125) Uncharacterized protein MTH1368 {Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: MTH1368 C-terminal domain-like
domain: Uncharacterized protein MTH1368
species: Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.72  E-value=1.4e-08  Score=76.47  Aligned_cols=62  Identities=21%  Similarity=0.262  Sum_probs=53.6

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCC--CcEEEEEecCCccccc
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANS--SNLIITVKPANQRANM   67 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsss--g~VtLtV~p~~q~~~~   67 (241)
                      .|++|..|.+++||++ +| ++||+|++|||+.+.  ++.++...|+...  ..|.|+|.|.++..++
T Consensus         3 ~Gv~V~~V~~~sPA~~-~L-~~GD~I~~ing~~v~--~~~~l~~~i~~~~~G~~v~l~v~R~~~~~~l   66 (103)
T d2hgaa1           3 DGVQIDSVVPGSPASK-VL-TPGLVIESINGMPTS--NLTTYSAALKTISVGEVINITTDQGTFHLKT   66 (103)
T ss_dssp             CCEEEEEECSSSGGGG-TS-CTTCEEEEETTEECS--SHHHHHHHHTTCCTTCEEEEEETTEEEEEEC
T ss_pred             CcEEEEEECCCChHHh-cC-CCCCEEEEECCEEcC--CHHHHHHHHhhCCCCCEEEEEEEECCEEEEE
Confidence            3899999999999987 55 999999999999998  9999999997654  3689999987766554

>d1ky9a1 b.36.1.4 (A:260-353) Protease Do (DegP, HtrA), C-terminal domains {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease Do (DegP, HtrA), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.71  E-value=1.4e-09  Score=80.38  Aligned_cols=65  Identities=20%  Similarity=0.398  Sum_probs=57.2

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCC--CcEEEEEecCCccccccc
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANS--SNLIITVKPANQRANMSV   69 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsss--g~VtLtV~p~~q~~~~~~   69 (241)
                      .|++|..|.+++||+++|+ +.||.|++|||++|.  +..++.+++....  ..+.++|.++++...+++
T Consensus        27 ~Gv~V~~V~~~spA~~aGl-~~gDvI~~i~g~~v~--~~~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v   93 (94)
T d1ky9a1          27 RGAFVSQVLPNSSAAKAGI-KAGDVITSLNGKPIS--SFAALRAQVGTMPVGSKLTLGLLRDGKQVNVNL   93 (94)
T ss_dssp             CSEECCCCTTCSSSTTTTC-CTTCEECBSSSSBCC--SSHHHHHHTTSSBTTCCCEEEEESSSCEEECCC
T ss_pred             CCcEEEECCCChhHHHhCC-CcccEEEEECCEEeC--CHHHHHHHHHhCCCCCEEEEEEEECCEEEEEEE
Confidence            4899999999999999997 999999999999999  8899999996543  369999999998877654

>d2i6va1 b.36.1.5 (A:219-305) General secretion pathway protein C, EpsC {Vibrio cholerae [TaxId: 666]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: EpsC C-terminal domain-like
domain: General secretion pathway protein C, EpsC
species: Vibrio cholerae [TaxId: 666]

Probab=98.65  E-value=2.4e-08  Score=73.26  Aligned_cols=65  Identities=20%  Similarity=0.249  Sum_probs=56.9

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhC--CCcEEEEEecCCccccccc
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVAN--SSNLIITVKPANQRANMSV   69 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKss--sg~VtLtV~p~~q~~~~~~   69 (241)
                      .|+.|..+.++++|+++|+ +.||.|++|||+++.  +.+++..++...  +..+.++|.+.++..++.+
T Consensus        19 ~G~~v~~v~~~s~~~~aGl-~~GDiI~~ing~~v~--~~~~~~~~~~~~~~~~~~~l~v~R~g~~~~i~v   85 (87)
T d2i6va1          19 LGYRVSPGKDPVLFESIGL-QDGDMAVALNGLDLT--DPNVMNTLFQSMNEMTEMSLTVERDGQQHDVYI   85 (87)
T ss_dssp             EEEEEEECSCHHHHHHTTC-CTTCEEEEETTEETT--CHHHHHHHHHTGGGCSEEEEEEEETTEEEEEEE
T ss_pred             EEEEEecCCCCCHHHHCCC-CCCCEEEEECCEEee--cHHHHHHHHHhhccccccEEEEEECCEEEEEEE
Confidence            3788999999999999998 999999999999999  899999999764  3469999999998877653

>d1sota1 b.36.1.4 (A:255-353) Stress sensor protease DegS, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Stress sensor protease DegS, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.63  E-value=2.9e-09  Score=79.50  Aligned_cols=64  Identities=22%  Similarity=0.361  Sum_probs=50.5

Q ss_pred             CcEEEEEEcCCCHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCC--CcEEEEEecCCcccccc
Q psy16075          2 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANS--SNLIITVKPANQRANMS   68 (241)
Q Consensus         2 pGIfIs~VvpGSpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsss--g~VtLtV~p~~q~~~~~   68 (241)
                      .|++|.+|.+++||+++|+ ++||.|++|||++|.  +..++...+....  ..+.++|.+.++..++.
T Consensus        26 ~Gv~V~~V~~~spA~~aGl-~~GDiI~~ing~~v~--~~~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~   91 (99)
T d1sota1          26 QGIVVNEVSPDGPAANAGI-QVNDLIISVDNKPAI--SALETMDQVAEIRPGSVIPVVVMRDDKQLTLQ   91 (99)
T ss_dssp             -CEECCCCCSSSTTTSSSC-CTTCEECBSSSSBCC--CSHHHHHHHHHSCTTCEEEECC-----CCCEE
T ss_pred             CccEEEEecCCCCHHHcCC-CcceEEEEECCEecc--cHHHHHHHHHcCCCCCEEEEEEEECCEEEEEE
Confidence            4899999999999999998 999999999999999  7888888886543  46889999988876664

>d1ujva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=8.7e-08  Score=71.10  Aligned_cols=49  Identities=18%  Similarity=0.137  Sum_probs=40.2

Q ss_pred             CHHhhhCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCC--CcEEEEEecC
Q psy16075         13 GLAESTGLLAVNDEVLEVNGILVAGKSLDQVTDMMVANS--SNLIITVKPA   61 (241)
Q Consensus        13 SpAerAGLLqvGD~ILeINGqsV~glshdeVv~LLKsss--g~VtLtV~p~   61 (241)
                      .+|++.+.|++||+|++|||+++.+++|++++++||+..  ..|.|+|.+.
T Consensus        40 ~~~~~~~~L~~GD~Il~VNg~~v~~~t~~evv~~lk~~~~g~~v~l~v~R~   90 (96)
T d1ujva_          40 LDIQGCPGLCEGDLIVEINQQNVQNLSHTEVVDILKDCPIGSETSLIIHRG   90 (96)
T ss_dssp             SCGGGSTTCCSSCEEEEETTEECSSCCHHHHHHHHHHSCTTSEEEEEEECC
T ss_pred             cCcccccCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCCCEEEEEEEEC
Confidence            445554445999999999999999999999999999753  3688888764

>d1wmhb_ d.15.2.2 (B:) Partitioning defective-6 homolog alpha, PAR-6 alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Partitioning defective-6 homolog alpha, PAR-6 alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.78  E-value=0.0002  Score=52.80  Aligned_cols=31  Identities=29%  Similarity=0.365  Sum_probs=27.6

Q ss_pred             eecccCCCCcccceeeeEEEEEeecccccchhcccccchhhhhhhhh
Q psy16075        116 ICRIEPSTNSDIFERTKIVFVFTMLSKTTKWMSDMNGHALRILARES  162 (241)
Q Consensus       116 ~~~~~p~t~s~~~~~~~i~~~~~~~~~~~~~~~~~~~~~lrl~~~~~  162 (241)
                      --|++|++|+++|.++.-       +         +.|||||++|++
T Consensus        52 hgDLLPINNDdNf~kA~~-------s---------a~PlLRi~iQrk   82 (82)
T d1wmhb_          52 HGDLLPLTNDDSLHRALA-------S---------GPPPLRLLVQKR   82 (82)
T ss_dssp             TSCEEECCSHHHHHHHTT-------S---------SSSCEEEEEECC
T ss_pred             CCCcccccCchHHHHHHH-------h---------cCCceeEeEEcC
Confidence            378999999999999876       7         999999999974

>d1vyua1 b.34.2.1 (A:39-174) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.78  E-value=0.031  Score=43.49  Aligned_cols=45  Identities=13%  Similarity=0.129  Sum_probs=40.1

Q ss_pred             hhhhcccccceeecccCC-CCcccceeeeEEEEEeecccccchhccc
Q psy16075        105 EVVDLTGITLEICRIEPS-TNSDIFERTKIVFVFTMLSKTTKWMSDM  150 (241)
Q Consensus       105 ~~~~~~~~~~~~~~~~p~-t~s~~~~~~~i~~~~~~~~~~~~~~~~~  150 (241)
                      .|+++..+....++-||| .....|..++|+.++...+ ..||++..
T Consensus        25 ~vra~~~Y~~~~d~~~P~~~~~LsF~~gdil~v~~~~d-~~WW~~r~   70 (136)
T d1vyua1          25 AVRTNVSYCGVLDEECPVQGSGVNFEAKDFLHIKEKYS-NDWWIGRL   70 (136)
T ss_dssp             EEEESSCEEGGGCTTCSSTTCBCEECTTCEEEEEEECS-SSEEEEEE
T ss_pred             EEEEeeccCCCCCCCCcccCcccCCCCCCEEEEEeccC-CCcEEEEe
Confidence            477888888888999999 7789999999999999887 78999976

>d1t0ha_ b.34.2.1 (A:) SH3-like domain of the L-type calcium channel {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=91.43  E-value=0.04  Score=40.78  Aligned_cols=47  Identities=13%  Similarity=0.070  Sum_probs=42.1

Q ss_pred             hhhhhcccccceeecccCC-CCcccceeeeEEEEEeecccccchhcccc
Q psy16075        104 DEVVDLTGITLEICRIEPS-TNSDIFERTKIVFVFTMLSKTTKWMSDMN  151 (241)
Q Consensus       104 ~~~~~~~~~~~~~~~~~p~-t~s~~~~~~~i~~~~~~~~~~~~~~~~~~  151 (241)
                      -.|+++..+...+.+-+|| .....|..++|+.++...+ +.||+....
T Consensus        22 ~~vrAlydY~~~~dd~~P~~~~~LsF~~GDii~v~~~~d-~~WW~gr~~   69 (96)
T d1t0ha_          22 FAVRTNVRYSAAQEDDVPVPGMAISFEAKDFLHVKEKFN-NDWWIGRLV   69 (96)
T ss_dssp             EEEEESSCBCCCGGGCCSSTTCBCCBCTTCEEEEEEECS-SSEEEEEES
T ss_pred             EEEEEeeccCCCCCCCCccccccccCCCCCEEEEeeeeC-CCceEEEEc
Confidence            4578899999999999999 8999999999999999987 789999874

>d1vyva1 b.34.2.1 (A:71-215) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=83.86  E-value=0.19  Score=38.57  Aligned_cols=45  Identities=9%  Similarity=0.161  Sum_probs=39.2

Q ss_pred             hhhhcccccceeecccCC-CCcccceeeeEEEEEeecccccchhccc
Q psy16075        105 EVVDLTGITLEICRIEPS-TNSDIFERTKIVFVFTMLSKTTKWMSDM  150 (241)
Q Consensus       105 ~~~~~~~~~~~~~~~~p~-t~s~~~~~~~i~~~~~~~~~~~~~~~~~  150 (241)
                      .|+++..+..++++--|| ...+.|.+++|+.+....+ ..||+...
T Consensus        25 ~vra~~dy~~~~d~~~p~~~~~LsF~kGDii~V~~~~d-~~WW~gr~   70 (145)
T d1vyva1          25 AVKTNVSYCGALDEDVPVPSSAVSFDAKDFLHIKEKYN-NDWWIGRL   70 (145)
T ss_dssp             EEEESSCBCTTSCCSCSSTTCBCCBCTTCEEEEEEEEE-TTEEEEEE
T ss_pred             EEEEeeeeCCccCCcCCcccccccCcCCCEEEEeeccC-CCcEEEEE
Confidence            588899888888887799 6789999999999999877 79999875

>d1kjwa1 b.34.2.1 (A:430-525) Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=80.12  E-value=0.21  Score=35.42  Aligned_cols=43  Identities=12%  Similarity=-0.024  Sum_probs=33.4

Q ss_pred             hhhcccccceeecccCCCCcccceeeeEEEEEeecccccchhccc
Q psy16075        106 VVDLTGITLEICRIEPSTNSDIFERTKIVFVFTMLSKTTKWMSDM  150 (241)
Q Consensus       106 ~~~~~~~~~~~~~~~p~t~s~~~~~~~i~~~~~~~~~~~~~~~~~  150 (241)
                      |++|..+....++-+|+ .+..|.+++|+.++...+ ..||+...
T Consensus         4 vrAlydy~~~~d~~~~~-~eLsf~kGdil~V~~~~d-~~WW~~~~   46 (96)
T d1kjwa1           4 IRALFDYDKTKDCGFLS-QALSFRFGDVLHVIDAGD-EEWWQARR   46 (96)
T ss_dssp             EEESSCBCHHHHHCCCS-SBCCBCTTCEEEEEECCS-SSEEEEEE
T ss_pred             EEEcccCcCCcCCCCCC-ccceEcCCCEEEEeeecc-CceEEEEE
Confidence            55666666665555665 469999999999999987 79999864