Psyllid ID: psy16105

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130
Protein Sequence
MIIVVVLNGPYQGEFTVMYLYTRLAFRWNEYNYSTFYTAYYFTDFLGAVASLFSNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSPALFIFLCHS
Secondary Structure (PSIPRED)
cEEEEEEEEEEcccEEEEEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cEEEEEEEcccccHHEEEEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHEEEEEEcc
Coil and Loop (DISEMBL)
MIIVVVLNGPYQGEFTVMYLYTRLAFRwneynystfYTAYYFTDFLGAVASLFSNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIapmiynpiynavYTATLDFMPSTFLLMSLVLTSPALFIFLCHS
Flexible Loop (DISEMBL)
MIIVVVlngpyqgeFTVMYLYTRLAFRWNEYNYSTFYTAYYFTDFLGAVASLFSNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSPALFIFLCHS
Low Complexity Region (SEG)
MIIVVVLNGPYQGEFTVMYLYTRLAFRWNEYNYSTFYTAYYFTDFLGAVASLFSNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSPALFIFLCHS
Disordered region (IsUnstruct)
*IIVVVLNGPYQGEFTVMYLYTRLAFRWNEYNYSTFYTAYYFTDFLGAVASLFSNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSPALFIFLC**
Disordered Region (DISOPRED)
MIIVVVLNGPYQGEFTVMYLYTRLAFRWNEYNYSTFYTAYYFTDFLGAVASLFSNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSPALFIFLCHS
Disordered Region (DISEMBL)
MIIVVVLNGPYQGEFTVMYLYTRLAFRWNEYNYSTFYTAYYFTDFLGAVASLFSNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSPALFIFLCHS
Disordered Region (DISPRO)
MIIVVVLNGPYQGEFTVMYLYTRLAFRWNEYNYSTFYTAYYFTDFLGAVASLFSNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSPALFIFLCHS
Transmembrane Helix (TMHMM)
iHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MIIVVVLNGPYQGEFTVMYLYTRLAFRWNEYNYSTFYTAYYFTDFLGAVASLFSNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSPALFIFLCHS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	130	2.2.26 [Sep-21-2011]
Q6PEM8	459	Proton-coupled folate tra	yes	N/A	0.5	0.141	0.393	0.0005
Q5EBA8	459	Proton-coupled folate tra	yes	N/A	0.5	0.141	0.393	0.0008

>sp|Q6PEM8|PCFT_MOUSE Proton-coupled folate transporter OS=Mus musculus GN=Slc46a1 PE=1 SV=1

 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 41/66 (62%), Gaps = 1/66 (1%)

Query: 61  MRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPS-TFLLMSLVLT 119
           +RA +SKL S  E G + SA     ++A ++ + I+N++Y ATL+FM    FLL + +L 
Sbjct: 375 IRAKLSKLVSESEQGALFSAVACVNSLAMLMASGIFNSIYPATLNFMKGFPFLLGAGLLF 434

Query: 120 SPALFI 125
            PA+ I
Sbjct: 435 IPAILI 440

Has been shown to act both as an intestinal proton-coupled high-affinity folate transporter and as an intestinal heme transporter which mediates heme uptake from the gut lumen into duodenal epithelial cells. The iron is then released from heme and may be transported into the bloodstream. Dietary heme iron is an important nutritional source of iron. Shows a higher affinity for folate than heme.
Mus musculus (taxid: 10090)

>sp|Q5EBA8|PCFT_RAT Proton-coupled folate transporter OS=Rattus norvegicus GN=Slc46a1 PE=2 SV=1

 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 41/66 (62%), Gaps = 1/66 (1%)

Query: 61  MRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPS-TFLLMSLVLT 119
           +RA +SKL S  E G + SA     ++A ++ + I+N++Y ATL+FM    FLL + +L 
Sbjct: 375 IRAKLSKLVSESEQGALFSAVACVNSLAMLMASGIFNSLYPATLNFMKGFPFLLGAGLLF 434

Query: 120 SPALFI 125
            PA+ I
Sbjct: 435 IPAILI 440

Has been shown to act both as an intestinal proton-coupled high-affinity folate transporter and as an intestinal heme transporter which mediates heme uptake from the gut lumen into duodenal epithelial cells. The iron is then released from heme and may be transported into the bloodstream. Dietary heme iron is an important nutritional source of iron. Shows a higher affinity for folate than heme.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	130
193664492	563	PREDICTED: proton-coupled folate transpo	0.976	0.225	0.387	1e-23
189239551	482	PREDICTED: similar to adenylate cyclase	0.969	0.261	0.360	7e-22
91087373	666	PREDICTED: similar to adenylate cyclase	0.969	0.189	0.348	2e-21
157122007	597	adenylate cyclase [Aedes aegypti] gi|108	0.976	0.212	0.335	2e-19
170035719	568	adenylate cyclase [Culex quinquefasciatu	0.976	0.223	0.329	4e-19
347972151	557	AGAP004562-PA [Anopheles gambiae str. PE	0.976	0.228	0.335	5e-19
328711223	525	PREDICTED: proton-coupled folate transpo	0.915	0.226	0.345	1e-18
328726363	350	PREDICTED: solute carrier family 46 memb	0.915	0.34	0.351	2e-18
357623126	498	adenylate cyclase [Danaus plexippus]	0.969	0.253	0.331	3e-18
91084449	552	PREDICTED: similar to adenylate cyclase	0.907	0.213	0.335	3e-18

>gi|193664492|ref|XP_001942608.1| PREDICTED: proton-coupled folate transporter-like [Acyrthosiphon pisum]

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 67/173 (38%), Positives = 89/173 (51%), Gaps = 46/173 (26%)

Query: 1   MIIVVVLNGPYQGEFTVMYLYTRLAFRWNEYNYSTFYT---------------------- 38
           M++V+V+ GP  GE +VMYL+TR+ F W+E NYS F T                      
Sbjct: 310 MVVVIVVMGPLHGEMSVMYLFTRVRFNWDEVNYSMFSTYSMITNLVGTMFSVGVFSHMLQ 369

Query: 39  ---------------------AYYFTDF---LGAVASLFSNASFIAMRAIISKLTSAEEL 74
                                A+  TDF   L  +  + +  SFIAMR+IISKL   +EL
Sbjct: 370 IDDALIGVISCMSKILAGFVYAFATTDFVFYLAPLVDIVNGTSFIAMRSIISKLVPPDEL 429

Query: 75  GKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSPALFIFL 127
           GKV S F + EA+ P+IY P+Y+AVY ATL  +P  F L+   LT+PA  IFL
Sbjct: 430 GKVNSLFGVCEALVPLIYGPMYSAVYKATLKTVPGAFFLLGGALTAPAALIFL 482

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189239551|ref|XP_975637.2| PREDICTED: similar to adenylate cyclase [Tribolium castaneum] gi|270009516|gb|EFA05964.1| hypothetical protein TcasGA2_TC008783 [Tribolium castaneum]

 Score =  108 bits (270), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 62/172 (36%), Positives = 87/172 (50%), Gaps = 46/172 (26%)

Query: 1   MIIVVVLNGPYQGEFTVMYLYTRLAFRWNEYNYS-------------TFYTAYYFTDFL- 46
           MI+V+V+ GP  GE  VMYL+ R  F+WNE +YS             T ++  +F+ FL 
Sbjct: 311 MILVMVIIGPMHGEMQVMYLFVRHRFKWNEIDYSLYSTFQFVIHVCGTVFSLMFFSKFLK 370

Query: 47  --------------------------------GAVASLFSNASFIAMRAIISKLTSAEEL 74
                                           GA+    +  SFIAMR+IISKL   EEL
Sbjct: 371 VDDAVLGMISSTSKIAASLVYAFAPTSTIFYLGAIIEALNGTSFIAMRSIISKLVPPEEL 430

Query: 75  GKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSPALFIF 126
           GK+ S F + EA+ P++Y P+YN VY  T+  +P +F L+   LT+PA+ IF
Sbjct: 431 GKINSLFGVSEALMPLVYGPMYNIVYETTIKVLPGSFFLLGGALTAPAIVIF 482

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91087373|ref|XP_975639.1| PREDICTED: similar to adenylate cyclase [Tribolium castaneum]

 Score =  107 bits (266), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 60/172 (34%), Positives = 89/172 (51%), Gaps = 46/172 (26%)

Query: 1   MIIVVVLNGPYQGEFTVMYLYTRLAFRWNEYNYSTFYTAYY------------------- 41
           M++ +V+ GP  GE +V+YL+ R  F WNE +YS + T Y                    
Sbjct: 285 MVLCMVIMGPMHGEVSVLYLFVRYKFGWNEIDYSIYSTFYVITHMFGTLLSLILFTKVLK 344

Query: 42  ---------------------------FTDFLGAVASLFSNASFIAMRAIISKLTSAEEL 74
                                      FT ++GA+  +F+  +FIAMR+IISKL   +EL
Sbjct: 345 IDDAALGVVSSASRIVASMVYAFAPNAFTFYVGALIEIFNGTTFIAMRSIISKLVPPDEL 404

Query: 75  GKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSPALFIF 126
           GK+ S F L EA+ P+IY P+Y+ VY  T++++P TF ++   LT P+LFIF
Sbjct: 405 GKINSLFGLSEAMVPIIYGPLYSIVYKHTINYLPGTFFIVGGALTVPSLFIF 456

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157122007|ref|XP_001659917.1| adenylate cyclase [Aedes aegypti] gi|108874606|gb|EAT38831.1| AAEL009314-PA [Aedes aegypti]

 Score =  100 bits (248), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 58/173 (33%), Positives = 86/173 (49%), Gaps = 46/173 (26%)

Query: 1   MIIVVVLNGPYQGEFTVMYLYTRLAFRWNEYNYSTF------------------------ 36
           MI+V+V+ GP  GE +V+YL+TR  F W+E  +S F                        
Sbjct: 313 MIVVMVVIGPLHGEMSVIYLFTRYKFNWSEVEFSFFSSYGMLTGLIGTIFSVGVFSHLLK 372

Query: 37  ----------------------YTAYYFTDFLGAVASLFSNASFIAMRAIISKLTSAEEL 74
                                 + A  +  +LG +  + +  SFI+MR+I +KL ++ EL
Sbjct: 373 IDDALIGVMSCMSKILSSFVYAFAATTWQLYLGPMVEMLNGTSFISMRSIATKLVASNEL 432

Query: 75  GKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSPALFIFL 127
           GKV S F + EA+ P++Y P+Y  VY AT+D +P  F L+   LTSPA+ IFL
Sbjct: 433 GKVNSLFGVAEALMPLVYAPMYTTVYAATIDVLPGAFFLLGGALTSPAVIIFL 485

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170035719|ref|XP_001845715.1| adenylate cyclase [Culex quinquefasciatus] gi|167878021|gb|EDS41404.1| adenylate cyclase [Culex quinquefasciatus]

 Score = 99.4 bits (246), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 57/173 (32%), Positives = 86/173 (49%), Gaps = 46/173 (26%)

Query: 1   MIIVVVLNGPYQGEFTVMYLYTRLAFRWNEYNYSTFYTAYYFTD---------------- 44
           MI+V+V+ GP  GE +V+YL+TR  F W+E  +S F T    T                 
Sbjct: 289 MIVVMVVIGPLHGEMSVIYLFTRYRFNWSEVEFSFFSTYGMLTGLIGTIFSVGVFSHLLK 348

Query: 45  ------------------------------FLGAVASLFSNASFIAMRAIISKLTSAEEL 74
                                         +LG +  + +  SFI+MR+I SKL +++EL
Sbjct: 349 IDDALIGVMSSMSKILSSFVYAFAVTTWQLYLGPIVEMLNGTSFISMRSIASKLVASDEL 408

Query: 75  GKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSPALFIFL 127
           GKV S F + EA+ P++Y P+Y  +Y AT++ +P  F L+   LT+PA+ IFL
Sbjct: 409 GKVNSLFGVAEALMPLVYAPMYTTIYAATINVLPGAFFLLGGALTAPAVVIFL 461

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347972151|ref|XP_562320.4| AGAP004562-PA [Anopheles gambiae str. PEST] gi|333469195|gb|EAL40562.4| AGAP004562-PA [Anopheles gambiae str. PEST]

 Score = 99.0 bits (245), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 58/173 (33%), Positives = 85/173 (49%), Gaps = 46/173 (26%)

Query: 1   MIIVVVLNGPYQGEFTVMYLYTRLAFRWNEYNYSTFYTAYYFTD---------------- 44
           MI+V+V+ GP  GE  V+YL+TR  F W+E  +S F T    T                 
Sbjct: 304 MIVVMVVIGPLHGEMAVIYLFTRYRFNWSEVEFSFFSTYGMLTGLIGTLFSVGVFSHLLK 363

Query: 45  ------------------------------FLGAVASLFSNASFIAMRAIISKLTSAEEL 74
                                         +LG +  + +  SFI+MR+I SKL +++EL
Sbjct: 364 IDDALIGVMSCMSKILSSFVYAFAVTTWQLYLGPIVEMLNGTSFISMRSIASKLVASDEL 423

Query: 75  GKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSPALFIFL 127
           GKV S F + EA+ P++Y P+Y  VYT +++ +P  F L+   LTSPA+ IFL
Sbjct: 424 GKVNSLFGVAEALMPLVYAPLYTTVYTLSINVLPGAFFLLGGALTSPAVVIFL 476

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328711223|ref|XP_001946964.2| PREDICTED: proton-coupled folate transporter-like isoform 1 [Acyrthosiphon pisum] gi|328711225|ref|XP_003244477.1| PREDICTED: proton-coupled folate transporter-like isoform 2 [Acyrthosiphon pisum]

 Score = 97.4 bits (241), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 57/165 (34%), Positives = 80/165 (48%), Gaps = 46/165 (27%)

Query: 9   GPYQGEFTVMYLYTRLAFRWNEYNYSTFYTAYYFTDFLGA-------------------- 48
           GP  GE ++MY++TRL F WNE ++S F T    T+ +G                     
Sbjct: 330 GPLYGEMSMMYMFTRLKFNWNEIDFSLFSTYAMVTNLIGTMFSVGVFSHKLGIDDALIGV 389

Query: 49  --------------------------VASLFSNASFIAMRAIISKLTSAEELGKVMSAFM 82
                                     +  + +  SFIAMR+IISKL  ++ELGKV S F 
Sbjct: 390 MSCMSKILAGFVYAFAPTAFIFYLAPLVEIINGTSFIAMRSIISKLVPSDELGKVNSIFG 449

Query: 83  LFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSPALFIFL 127
           + EA+ P+IY P+Y++VY  TL   P  F L+  +LT+PA  IFL
Sbjct: 450 VCEALVPLIYGPMYSSVYKHTLKTFPGAFFLLGGLLTAPAAIIFL 494

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328726363|ref|XP_003248866.1| PREDICTED: solute carrier family 46 member 3-like [Acyrthosiphon pisum]

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/165 (35%), Positives = 81/165 (49%), Gaps = 46/165 (27%)

Query: 9   GPYQGEFTVMYLYTRLAFRWNEYNYSTFYTAYYFTDFLGAVAS----------------- 51
           GP  GE ++MY++TRL F WNE ++S F T    T+ +G + S                 
Sbjct: 142 GPLYGEMSMMYMFTRLKFNWNEIDFSLFSTYAMVTNLIGTMFSVGVFSHKLGIDDALIGV 201

Query: 52  -----------------------------LFSNASFIAMRAIISKLTSAEELGKVMSAFM 82
                                        + +  SFIAMR+IISKL  ++ELGKV S F 
Sbjct: 202 MSCMSKILAGFVYAFAPTAFIFYLAPLVEIINGTSFIAMRSIISKLVPSDELGKVNSIFG 261

Query: 83  LFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSPALFIFL 127
           + EA+ P+IY P+Y++VY  TL   P  F L+  +LT+PA  IFL
Sbjct: 262 VCEALVPLIYGPMYSSVYKHTLKTFPGAFFLLGGLLTAPAAIIFL 306

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357623126|gb|EHJ74402.1| adenylate cyclase [Danaus plexippus]

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 83/172 (48%), Gaps = 46/172 (26%)

Query: 1   MIIVVVLNGPYQGEFTVMYLYTRLAFRWNEYNYSTFYTAYYFTDFLGAVASL-------- 52
           +++V V+ GP  GE  V+YL+ R  F W+E  +S F T    T+ +G + S+        
Sbjct: 303 IVVVCVIFGPLHGEMNVLYLFMRYRFNWDEVQFSMFCTYSIITNLVGTLFSISIFSDFMK 362

Query: 53  --------------------------------------FSNASFIAMRAIISKLTSAEEL 74
                                                 F+  SFIAMR+I SKL ++EEL
Sbjct: 363 LDDSVVGIISCTSKILASFIFAFASTKTEIYIAPLVEIFNGTSFIAMRSIASKLVTSEEL 422

Query: 75  GKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSPALFIF 126
           GKV S F L EA+ P++Y P+Y+ VY ATL+ +P    L+   +T PA+ IF
Sbjct: 423 GKVNSLFGLAEAMMPLVYGPLYSRVYMATLNVLPGAVFLLGAAMTVPAVAIF 474

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91084449|ref|XP_969712.1| PREDICTED: similar to adenylate cyclase [Tribolium castaneum]

 Score = 96.3 bits (238), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 55/164 (33%), Positives = 77/164 (46%), Gaps = 46/164 (28%)

Query: 9   GPYQGEFTVMYLYTRLAFRWNEYNYSTFYTAYYFTD------------------------ 44
           GP  GE  V YL+TR  F W+E ++S F T    T+                        
Sbjct: 327 GPLHGEMNVTYLFTRYRFNWDEVDFSIFSTYSMVTNLIGTSISVGVFSHVLKIDDAIIGI 386

Query: 45  ----------------------FLGAVASLFSNASFIAMRAIISKLTSAEELGKVMSAFM 82
                                 +LGA+  + +  SFIAMR+I SKL   +ELGKV S F 
Sbjct: 387 YSSMSKILSSFVYGFAKTSLVFYLGAIVEILNGTSFIAMRSIASKLVPPDELGKVNSLFG 446

Query: 83  LFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSPALFIF 126
             EA+ P++Y P+Y+A Y AT++ MP  F ++  +LT PA+ IF
Sbjct: 447 ACEALMPLVYGPMYSATYAATINVMPGAFFILGGILTVPAVLIF 490

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	130
FB|FBgn0030576	599	CG15890 [Drosophila melanogast	0.638	0.138	0.457	3.4e-14
FB|FBgn0033387	566	CG8008 [Drosophila melanogaste	0.630	0.144	0.265	8.7e-10
WB|WBGene00021159	469	Y4C6B.5 [Caenorhabditis elegan	0.538	0.149	0.385	1.6e-08
FB|FBgn0051321	601	CG31321 [Drosophila melanogast	0.653	0.141	0.290	2.4e-08
FB|FBgn0050345	494	CG30345 [Drosophila melanogast	0.938	0.246	0.302	3.2e-07
UNIPROTKB|Q7Z3Q1	461	SLC46A3 "Solute carrier family	0.630	0.177	0.317	4.5e-07
UNIPROTKB|E2QTY8	461	SLC46A3 "Uncharacterized prote	0.630	0.177	0.294	8.2e-06
FB|FBgn0050344	507	CG30344 [Drosophila melanogast	0.623	0.159	0.317	8.3e-06
UNIPROTKB|I3L9X9	459	LOC100624611 "Uncharacterized	0.5	0.141	0.424	9.2e-06
UNIPROTKB|I3LB07	459	SLC46A1 "Uncharacterized prote	0.5	0.141	0.424	9.2e-06

FB|FBgn0030576 CG15890 [Drosophila melanogaster (taxid:7227)]

 Score = 192 (72.6 bits), Expect = 3.4e-14, P = 3.4e-14
 Identities = 38/83 (45%), Positives = 56/83 (67%)

Query:    45 FLGAVASLFSNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATL 104
             +LG +  +F+  +FIAMR+I +KL S +ELGKV S F + EA+ PM++ P+Y  +Y ATL
Sbjct:   422 YLGGLVEIFNGTAFIAMRSIATKLVSKDELGKVNSLFGVAEALMPMVFAPMYTTLYAATL 481

Query:   105 DFMPSTFLLMSLVLTSPALFIFL 127
               +P  F L+   LT  ++FIFL
Sbjct:   482 RVLPGAFFLLGGGLTLFSVFIFL 504

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

FB|FBgn0033387 CG8008 [Drosophila melanogaster (taxid:7227)]

 Score = 97 (39.2 bits), Expect = 8.7e-10, Sum P(2) = 8.7e-10
 Identities = 22/83 (26%), Positives = 40/83 (48%)

Query:    45 FLGAVASLFSNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATL 104
             +L     +F + S    R I+S +    +LGK+ S   + ++ AP +  P+Y  +Y  +L
Sbjct:   466 YLSVTLGVFRSISGPMCRTIVSNIVPPSDLGKIFSIKNVLQSFAPFVAAPLYTLIYKRSL 525

Query:   105 DFMPSTFLLMSLVLTSPALFIFL 127
                P  F  +S  L   + F+F+
Sbjct:   526 TTYPGLFNFVSSFLYLLS-FVFI 547

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

WB|WBGene00021159 Y4C6B.5 [Caenorhabditis elegans (taxid:6239)]

 Score = 116 (45.9 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
 Identities = 27/70 (38%), Positives = 34/70 (48%)

Query:    48 AVASLFSNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFM 107
             AV  +F+       RA IS L   +E GK+ S   L E I  ++   IYN VY  TL F 
Sbjct:   354 AVIVMFNRFVSTGFRAFISSLIDMQEQGKIFSVISLLEGITTLVATSIYNNVYPNTLTFF 413

Query:   108 PSTFLLMSLV 117
             P    L+S V
Sbjct:   414 PGLLYLISAV 423

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

FB|FBgn0051321 CG31321 [Drosophila melanogaster (taxid:7227)]

 Score = 125 (49.1 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
 Identities = 25/86 (29%), Positives = 47/86 (54%)

Query:    45 FLGAVASLFSNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATL 104
             ++  V  +F +   IA++ I S + + +EL K+ S F + E IA  I+ PI++ +Y +T+
Sbjct:   476 YVAGVVDMFVSLRVIAIKTIGSSIVAGDELSKMYSIFGISEPIAQFIFPPIFSEIYKSTV 535

Query:   105 DFMPSTFLLMSLVLTSPALFIFL-CH 129
             D  P    L   +   P + +F+ C+
Sbjct:   536 DSFPGAIWLFGEIFYIPNVLVFVVCY 561

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

FB|FBgn0050345 CG30345 [Drosophila melanogaster (taxid:7227)]

 Score = 126 (49.4 bits), Expect = 3.2e-07, P = 3.2e-07
 Identities = 39/129 (30%), Positives = 63/129 (48%)

Query:     3 IVVVLNGPYQGEFTVMYLYTRLAFRWNEYNYSTFYTAYYFTD-FLGAVASLFSNASFIAM 61
             I ++L     G  T+M   T LAF       +   TA Y ++ +L  +  +         
Sbjct:   351 IAMILLRRLLGLSTIMM--TLLAFACCVLESTVRATAVYGSEMYLALMVGMMRGVMSPMC 408

Query:    62 RAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSP 121
             +AI+S +T + ELGK+ S     ++I+P+   P+Y AVY AT++F P  F  +S+ L   
Sbjct:   409 KAILSHVTPSSELGKIFSLTTSLQSISPLGAAPLYTAVYQATVNFYPGIFNFISVGL--- 465

Query:   122 ALFIFLCHS 130
               F+  C S
Sbjct:   466 -YFLCFCMS 473

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

UNIPROTKB|Q7Z3Q1 SLC46A3 "Solute carrier family 46 member 3" [Homo sapiens (taxid:9606)]

 Score = 106 (42.4 bits), Expect = 4.5e-07, Sum P(2) = 4.5e-07
 Identities = 27/85 (31%), Positives = 45/85 (52%)

Query:    45 FLGAVASLFSNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATL 104
             FL  V  LF+   F  +R+++SK+  + E G + +     E +  +     +N +Y+AT+
Sbjct:   352 FLARVPFLFTIVPFSVLRSMLSKVVRSTEQGTLFACIAFLETLGGVTAVSTFNGIYSATV 411

Query:   105 DFMPS-TFLLMSLVLTSPALFIFLC 128
              + P  TFLL + +L  PA  I LC
Sbjct:   412 AWYPGFTFLLSAGLLLLPA--ISLC 434

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E2QTY8 SLC46A3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 98 (39.6 bits), Expect = 8.2e-06, Sum P(2) = 8.2e-06
 Identities = 25/85 (29%), Positives = 44/85 (51%)

Query:    45 FLGAVASLFSNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATL 104
             FL  +  LF+      +R++ISK   + E G + +     E +  +     +N +Y+AT+
Sbjct:   352 FLVRLPFLFTIVPLSVLRSMISKAVRSTEQGTLFACIAFLETLGGVTAVSTFNGIYSATV 411

Query:   105 DFMPS-TFLLMSLVLTSPALFIFLC 128
              + P  TFLL +++L  PA  + LC
Sbjct:   412 AWYPGFTFLLSAVLLLIPA--VSLC 434

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

FB|FBgn0050344 CG30344 [Drosophila melanogaster (taxid:7227)]

 Score = 113 (44.8 bits), Expect = 8.3e-06, P = 8.3e-06
 Identities = 26/82 (31%), Positives = 42/82 (51%)

Query:    38 TAYYFTD-FLGAVASLFSNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIY 96
             TA Y+ + +LG    +         RAI+S +  A E+GK+ +     E+++P+   P+Y
Sbjct:   397 TAVYWQELYLGMTLGMMRGVMGPMCRAILSHVAPATEVGKIFALTTSMESVSPLGAAPLY 456

Query:    97 NAVYTATLDFMPSTFLLMSLVL 118
               VY ATL+  P  F  +S  L
Sbjct:   457 TTVYKATLENYPGAFNFISAAL 478

GO:0005215 "transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0031427 "response to methotrexate" evidence=IEP

UNIPROTKB|I3L9X9 LOC100624611 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 112 (44.5 bits), Expect = 9.2e-06, P = 9.2e-06
 Identities = 28/66 (42%), Positives = 41/66 (62%)

Query:    61 MRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPS-TFLLMSLVLT 119
             +RA +SKL S  E G + SA     ++A ++ + I+NA+Y ATL+FM    FLL + +L 
Sbjct:   375 IRAKLSKLVSVSEQGALFSAVACVNSLAMLLASGIFNALYPATLNFMKGFPFLLGAGLLL 434

Query:   120 SPALFI 125
              PAL I
Sbjct:   435 IPALLI 440

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

UNIPROTKB|I3LB07 SLC46A1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 112 (44.5 bits), Expect = 9.2e-06, P = 9.2e-06
 Identities = 28/66 (42%), Positives = 41/66 (62%)

Query:    61 MRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPS-TFLLMSLVLT 119
             +RA +SKL S  E G + SA     ++A ++ + I+NA+Y ATL+FM    FLL + +L 
Sbjct:   375 IRAKLSKLVSVSEQGALFSAVACVNSLAMLLASGIFNALYPATLNFMKGFPFLLGAGLLL 434

Query:   120 SPALFI 125
              PAL I
Sbjct:   435 IPALLI 440

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	130
KOG2816|consensus	463		99.59
PRK10054	395	putative transporter; Provisional	98.42
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	98.38
PRK11646	400	multidrug resistance protein MdtH; Provisional	98.35
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	98.3
TIGR00893	399	2A0114 d-galactonate transporter.	98.24
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	98.22
TIGR00893	399	2A0114 d-galactonate transporter.	98.17
PRK03545	390	putative arabinose transporter; Provisional	98.12
PRK10213	394	nepI ribonucleoside transporter; Reviewed	98.11
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	98.08
PRK11646	400	multidrug resistance protein MdtH; Provisional	98.08
TIGR00900	365	2A0121 H+ Antiporter protein.	98.02
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.01
PRK10489	417	enterobactin exporter EntS; Provisional	98.01
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	98.0
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	98.0
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	97.97
PRK11195	393	lysophospholipid transporter LplT; Provisional	97.96
PRK11663	434	regulatory protein UhpC; Provisional	97.94
TIGR00900	365	2A0121 H+ Antiporter protein.	97.93
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	97.93
KOG2615|consensus	451		97.92
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	97.89
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	97.84
PRK05122	399	major facilitator superfamily transporter; Provisi	97.83
PRK12382	392	putative transporter; Provisional	97.82
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	97.81
PRK10091	382	MFS transport protein AraJ; Provisional	97.8
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	97.79
PRK11902	402	ampG muropeptide transporter; Reviewed	97.79
TIGR00901	356	2A0125 AmpG-related permease.	97.78
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	97.78
TIGR00891	405	2A0112 putative sialic acid transporter.	97.76
TIGR00891	405	2A0112 putative sialic acid transporter.	97.75
PRK15011	393	sugar efflux transporter B; Provisional	97.75
TIGR00895	398	2A0115 benzoate transport.	97.74
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	97.73
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	97.72
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	97.71
PRK03633	381	putative MFS family transporter protein; Provision	97.69
PRK10489	417	enterobactin exporter EntS; Provisional	97.67
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	97.66
PRK03545	390	putative arabinose transporter; Provisional	97.64
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	97.63
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	97.61
TIGR00892	455	2A0113 monocarboxylate transporter 1.	97.61
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	97.6
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	97.59
TIGR00897	402	2A0118 polyol permease family. This family of prot	97.59
PRK03699	394	putative transporter; Provisional	97.59
COG2270	438	Permeases of the major facilitator superfamily [Ge	97.57
PRK03893	496	putative sialic acid transporter; Provisional	97.57
PRK10504	471	putative transporter; Provisional	97.56
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	97.55
KOG2532|consensus	466		97.53
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	97.52
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	97.52
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	97.51
PRK03633	381	putative MFS family transporter protein; Provision	97.51
TIGR00895	398	2A0115 benzoate transport.	97.48
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	97.47
PRK03893	496	putative sialic acid transporter; Provisional	97.47
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	97.46
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	97.44
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	97.44
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	97.44
PRK12307	426	putative sialic acid transporter; Provisional	97.44
PRK09874	408	drug efflux system protein MdtG; Provisional	97.43
TIGR00788	468	fbt folate/biopterin transporter. The only functio	97.42
PRK10473	392	multidrug efflux system protein MdtL; Provisional	97.42
PRK05122	399	major facilitator superfamily transporter; Provisi	97.4
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	97.37
PRK09874	408	drug efflux system protein MdtG; Provisional	97.36
PRK11043	401	putative transporter; Provisional	97.36
PRK10213	394	nepI ribonucleoside transporter; Reviewed	97.34
PRK09705	393	cynX putative cyanate transporter; Provisional	97.33
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	97.32
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	97.32
PRK14995	495	methyl viologen resistance protein SmvA; Provision	97.32
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	97.32
PRK11010	491	ampG muropeptide transporter; Validated	97.31
PRK11195	393	lysophospholipid transporter LplT; Provisional	97.27
PRK12382	392	putative transporter; Provisional	97.24
PRK15011	393	sugar efflux transporter B; Provisional	97.22
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	97.22
PRK09528	420	lacY galactoside permease; Reviewed	97.22
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	97.21
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	97.2
PRK03699	394	putative transporter; Provisional	97.2
PRK09705	393	cynX putative cyanate transporter; Provisional	97.18
PRK11652	394	emrD multidrug resistance protein D; Provisional	97.17
TIGR00897	402	2A0118 polyol permease family. This family of prot	97.17
PRK10207	489	dipeptide/tripeptide permease B; Provisional	97.12
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	97.11
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	97.0
PRK10504	471	putative transporter; Provisional	96.94
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	96.92
PRK09584	500	tppB putative tripeptide transporter permease; Rev	96.9
KOG4686|consensus	459		96.9
TIGR00901	356	2A0125 AmpG-related permease.	96.9
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	96.88
PRK15403	413	multidrug efflux system protein MdtM; Provisional	96.86
TIGR00896	355	CynX cyanate transporter. This family of proteins	96.86
PRK11902	402	ampG muropeptide transporter; Reviewed	96.86
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	96.85
PRK11663	434	regulatory protein UhpC; Provisional	96.81
PRK15462	493	dipeptide/tripeptide permease D; Provisional	96.78
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	96.78
TIGR00896	355	CynX cyanate transporter. This family of proteins	96.76
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	96.75
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	96.73
PRK10077	479	xylE D-xylose transporter XylE; Provisional	96.67
TIGR00892	455	2A0113 monocarboxylate transporter 1.	96.64
TIGR00898	505	2A0119 cation transport protein.	96.62
PRK14995	495	methyl viologen resistance protein SmvA; Provision	96.62
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	96.53
PRK12307	426	putative sialic acid transporter; Provisional	96.49
PTZ00207	591	hypothetical protein; Provisional	96.49
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	96.48
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	96.48
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	96.44
PRK11652	394	emrD multidrug resistance protein D; Provisional	96.43
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	96.43
KOG2533|consensus	495		96.42
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	96.4
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	96.33
PLN00028	476	nitrate transmembrane transporter; Provisional	96.3
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	96.3
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	96.19
PRK10054	395	putative transporter; Provisional	96.18
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	96.18
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	96.14
PRK09528	420	lacY galactoside permease; Reviewed	96.12
PRK10091	382	MFS transport protein AraJ; Provisional	96.07
KOG3764|consensus	464		96.06
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	95.94
PRK15075	434	citrate-proton symporter; Provisional	95.93
PRK11010	491	ampG muropeptide transporter; Validated	95.92
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	95.91
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	95.83
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	95.82
TIGR00898	505	2A0119 cation transport protein.	95.48
PRK10077	479	xylE D-xylose transporter XylE; Provisional	95.41
PRK09952	438	shikimate transporter; Provisional	95.36
PRK10133	438	L-fucose transporter; Provisional	95.31
PRK10642	490	proline/glycine betaine transporter; Provisional	95.2
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	95.13
TIGR00805	633	oat sodium-independent organic anion transporter.	94.93
PRK11043	401	putative transporter; Provisional	94.82
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	94.71
KOG2504|consensus	509		94.68
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	94.56
PRK09669	444	putative symporter YagG; Provisional	94.55
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	94.55
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	94.4
PRK10406	432	alpha-ketoglutarate transporter; Provisional	94.39
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	94.25
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	94.17
PRK09584	500	tppB putative tripeptide transporter permease; Rev	93.96
PRK09848	448	glucuronide transporter; Provisional	93.92
PRK15462	493	dipeptide/tripeptide permease D; Provisional	93.92
PRK10207	489	dipeptide/tripeptide permease B; Provisional	93.87
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	93.87
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	93.69
PRK15075	434	citrate-proton symporter; Provisional	93.57
PRK10406	432	alpha-ketoglutarate transporter; Provisional	93.56
PLN00028	476	nitrate transmembrane transporter; Provisional	93.47
KOG2325|consensus	488		93.46
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	93.44
TIGR00788	468	fbt folate/biopterin transporter. The only functio	93.09
PRK10642	490	proline/glycine betaine transporter; Provisional	93.01
PRK10473	392	multidrug efflux system protein MdtL; Provisional	92.84
PRK09952	438	shikimate transporter; Provisional	92.64
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	91.51
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	91.28
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	91.08
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	91.01
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	90.7
PRK15403	413	multidrug efflux system protein MdtM; Provisional	90.45
KOG2615|consensus	451		90.18
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	90.13
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	89.28
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	89.04
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	89.03
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	89.0
PRK10133	438	L-fucose transporter; Provisional	88.89
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	88.7
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	88.63
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	88.24
PRK10429	473	melibiose:sodium symporter; Provisional	88.18
KOG2532|consensus	466		86.83
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	86.81
PRK09669	444	putative symporter YagG; Provisional	86.32
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	86.31
PRK10429	473	melibiose:sodium symporter; Provisional	83.94
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	81.2
KOG1330|consensus	493		80.95
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	80.35

>KOG2816|consensus

Probab=99.59  E-value=1.6e-15  Score=125.30  Aligned_cols=107  Identities=26%  Similarity=0.451  Sum_probs=94.9

Q ss_pred             ccchhHHHHHhhhhhccccchhHHHHHHHHHHHHH--------------------------------------------H
Q psy16105         11 YQGEFTVMYLYTRLAFRWNEYNYSTFYTAYYFTDF--------------------------------------------L   46 (130)
Q Consensus        11 ~~g~~~i~~ly~~~~f~W~~~~~g~~~~~~~~~~~--------------------------------------------~   46 (130)
                      ..+.+++.++|+|.||+||+++++.+.+..+....                                            .
T Consensus       257 ~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~~~  336 (463)
T KOG2816|consen  257 AGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETWMMFA  336 (463)
T ss_pred             hcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccchhhhH
Confidence            44555577999999999999999999888765544                                            4


Q ss_pred             HHHHHHHHhhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHhccccCCchHHHHHHH
Q psy16105         47 GAVASLFSNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLV  117 (130)
Q Consensus        47 ~~~~~~~~~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t~~~~pg~~f~~~a~  117 (130)
                      +.++.+++....|++|+.+||.+++|||||+++..+.+++++++++|++++.+|..|.+.+||..|...++
T Consensus       337 ~~v~~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~~t~~~~~~~~~~~~~~  407 (463)
T KOG2816|consen  337 AGVVVALAGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFALTLDDLPGFLFVISSL  407 (463)
T ss_pred             HHHHHHhhcchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHHHHHHhcccccccccch
Confidence            56677788999999999999999999999999999999999999999999999999999999988887766

>PRK10054 putative transporter; Provisional

Probab=98.42  E-value=1.2e-05  Score=64.56  Aligned_cols=108  Identities=10%  Similarity=0.022  Sum_probs=80.5

Q ss_pred             hhHHHHHhhhhhccccchhHHHHHHHHHHHHH-----------------------------------------H---HHH
Q psy16105         14 EFTVMYLYTRLAFRWNEYNYSTFYTAYYFTDF-----------------------------------------L---GAV   49 (130)
Q Consensus        14 ~~~i~~ly~~~~f~W~~~~~g~~~~~~~~~~~-----------------------------------------~---~~~   49 (130)
                      ....+..|.++++||++.+.|+..+...+...                                         .   ...
T Consensus        26 ~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (395)
T PRK10054         26 TLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFFAL  105 (395)
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            34566788899999999999999887654443                                         0   011


Q ss_pred             HHHHHhhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHH
Q psy16105         50 ASLFSNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSPALFI  125 (130)
Q Consensus        50 ~~~~~~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t~~~~pg~~f~~~a~l~~~~~~l  125 (130)
                      .+...+...|+.++..++.+|++++|+.+|......+++..++|++...+++.   .+ ..+|++.+.+.+..+++
T Consensus       106 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~~---g~-~~~f~~~~~~~~i~~i~  177 (395)
T PRK10054        106 INCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVMQ---SI-NLPFWLAAICSAFPLVF  177 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cc-CcHHHHHHHHHHHHHHH
Confidence            12222455788999999999999999999999999999999999999988753   23 45777777666555433

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=98.38  E-value=2.1e-06  Score=71.45  Aligned_cols=80  Identities=18%  Similarity=0.223  Sum_probs=63.7

Q ss_pred             HHHHHHHHHhhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHH
Q psy16105         46 LGAVASLFSNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSPALFI  125 (130)
Q Consensus        46 ~~~~~~~~~~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t~~~~pg~~f~~~a~l~~~~~~l  125 (130)
                      .+...+.+.|-.++..||+.++++|+++.|+.||+.+..+-.+..++|.++..+-..|-+...|  ++....+.+..+++
T Consensus       386 ~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g--~~~l~~lf~~gl~l  463 (477)
T PF11700_consen  386 LAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYG--FLFLLVLFLIGLIL  463 (477)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhH--HHHHHHHHHHHHHH
Confidence            4455666778899999999999999999999999999999999999999999998887554445  33444455555555


Q ss_pred             HH
Q psy16105        126 FL  127 (130)
Q Consensus       126 ~~  127 (130)
                      +.
T Consensus       464 l~  465 (477)
T PF11700_consen  464 LF  465 (477)
T ss_pred             Hh
Confidence            44

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=98.35  E-value=1.6e-05  Score=63.83  Aligned_cols=108  Identities=13%  Similarity=0.036  Sum_probs=80.7

Q ss_pred             hHHHHHhhhhhccccchhHHHHHHHHHHHHH--------------------------------------------HHHHH
Q psy16105         15 FTVMYLYTRLAFRWNEYNYSTFYTAYYFTDF--------------------------------------------LGAVA   50 (130)
Q Consensus        15 ~~i~~ly~~~~f~W~~~~~g~~~~~~~~~~~--------------------------------------------~~~~~   50 (130)
                      ......|..+.++|++.+.|+..+...+...                                            .....
T Consensus        30 ~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~  109 (400)
T PRK11646         30 FPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILS  109 (400)
T ss_pred             HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            4455567788999999999999987554432                                            11122


Q ss_pred             HHHHhhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHH
Q psy16105         51 SLFSNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSPALFIF  126 (130)
Q Consensus        51 ~~~~~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t~~~~pg~~f~~~a~l~~~~~~l~  126 (130)
                      +...+...|+..+.+.+.+|+||+|+..|......+++..++|++...+...    ....+|++.+.+.+.+.++.
T Consensus       110 g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~~----g~~~~f~~~~~~~~~~~i~~  181 (400)
T PRK11646        110 GLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQY----DFRLVCATGAVLFVLAAAFN  181 (400)
T ss_pred             HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hHHHHHHHHHHHHHHHHHHH
Confidence            3334567899999999999999999999999999999999999999988733    23456777666665554443

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=98.30  E-value=1.3e-05  Score=60.92  Aligned_cols=114  Identities=14%  Similarity=0.127  Sum_probs=86.0

Q ss_pred             cchhHHHHHhhhhhccccchhHHHHHHHHHHHHH---------------------------------------------H
Q psy16105         12 QGEFTVMYLYTRLAFRWNEYNYSTFYTAYYFTDF---------------------------------------------L   46 (130)
Q Consensus        12 ~g~~~i~~ly~~~~f~W~~~~~g~~~~~~~~~~~---------------------------------------------~   46 (130)
                      .........|.++.+++++.+.+...+..++...                                             .
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  271 (352)
T cd06174         192 YGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVA  271 (352)
T ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence            3344556666777778888888887766544333                                             1


Q ss_pred             HHHHHHHHhhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHH
Q psy16105         47 GAVASLFSNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSPALFIF  126 (130)
Q Consensus        47 ~~~~~~~~~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t~~~~pg~~f~~~a~l~~~~~~l~  126 (130)
                      ....+...+...|...+.+.+.+|+|++|+.+|..+..++++..++|++...+++.   .-+...|.+.+.+.+++.++.
T Consensus       272 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~---~~~~~~~~~~~~~~~i~~i~~  348 (352)
T cd06174         272 LLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDT---GGYGGVFLILAALALLAALLL  348 (352)
T ss_pred             HHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---cCcchHHHHHHHHHHHHHHHh
Confidence            12233345667899999999999999999999999999999999999999999863   345677888888887777665


Q ss_pred             Hh
Q psy16105        127 LC  128 (130)
Q Consensus       127 ~~  128 (130)
                      .+
T Consensus       349 ~~  350 (352)
T cd06174         349 LL  350 (352)
T ss_pred             ee
Confidence            44

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00893 2A0114 d-galactonate transporter

Probab=98.24  E-value=2.7e-05  Score=59.91  Aligned_cols=70  Identities=13%  Similarity=0.037  Sum_probs=56.9

Q ss_pred             HHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHh
Q psy16105         57 SFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSPALFIFLC  128 (130)
Q Consensus        57 ~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t~~~~pg~~f~~~a~l~~~~~~l~~~  128 (130)
                      ..|...+++++.+|++++|+.+|..+....++..++|++...+++..-+  ....|++.+++.+++.++..+
T Consensus       328 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~--~~~~~~~~~~~~~~~~~~~~~  397 (399)
T TIGR00893       328 AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGS--FAGALMVVAALALIGALSYLL  397 (399)
T ss_pred             hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCc--hhHHHHHHHHHHHHHHHHHHH
Confidence            5899999999999999999999999999999999999999999875211  345667777776666665544

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=98.22  E-value=2.7e-05  Score=59.63  Aligned_cols=102  Identities=13%  Similarity=0.103  Sum_probs=78.7

Q ss_pred             hhhhhccccchhHHHHHHHHHHHHH--------------------------------------------HHHHHHHHHhh
Q psy16105         21 YTRLAFRWNEYNYSTFYTAYYFTDF--------------------------------------------LGAVASLFSNA   56 (130)
Q Consensus        21 y~~~~f~W~~~~~g~~~~~~~~~~~--------------------------------------------~~~~~~~~~~~   56 (130)
                      +.++++|+++.+.|+..+...+...                                            .....+...+.
T Consensus        22 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~  101 (352)
T PF07690_consen   22 YLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFASNFWLLLIARFLLGIGSGF  101 (352)
T ss_dssp             HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhhhhHHHHhhhcccccccccc
Confidence            6788999999999998877655443                                            11222333478


Q ss_pred             HHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHH
Q psy16105         57 SFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSPALFI  125 (130)
Q Consensus        57 ~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t~~~~pg~~f~~~a~l~~~~~~l  125 (130)
                      ..|+.++.+++..|+|||++.++..+...+++.+++|++...+++. . .|+ .+|++.+.+.++..++
T Consensus       102 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~-~-~~~-~~~~~~~~~~~~~~il  167 (352)
T PF07690_consen  102 FSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISY-F-GWR-WAFLISAILSLIAAIL  167 (352)
T ss_dssp             HHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCH-C-HHC-CHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhc-c-ccc-cccccccchhhhhhhh
Confidence            8999999999999999999999999999999999999999988733 1 133 3577777777666554

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00893 2A0114 d-galactonate transporter

Probab=98.17  E-value=6.7e-05  Score=57.74  Aligned_cols=104  Identities=13%  Similarity=0.084  Sum_probs=76.8

Q ss_pred             HHHhhhhhccccchhHHHHHHHHHHHHH--------------------------------------------HHHHHHHH
Q psy16105         18 MYLYTRLAFRWNEYNYSTFYTAYYFTDF--------------------------------------------LGAVASLF   53 (130)
Q Consensus        18 ~~ly~~~~f~W~~~~~g~~~~~~~~~~~--------------------------------------------~~~~~~~~   53 (130)
                      ..-+.++++++++.+.|+..+...+...                                            .-...+..
T Consensus        16 ~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~   95 (399)
T TIGR00893        16 AAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVLLGAA   95 (399)
T ss_pred             hHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence            3345678899999999999887655443                                            11223334


Q ss_pred             HhhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHhccccCCchHHHHHHHHHHHHHH
Q psy16105         54 SNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSPALF  124 (130)
Q Consensus        54 ~~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t~~~~pg~~f~~~a~l~~~~~~  124 (130)
                      .+...|+..+.+++..|+||||+.++..+...+++.+++|++...+.+..  .| ...|++.+.+.++..+
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~--~~-~~~~~~~~~~~~~~~~  163 (399)
T TIGR00893        96 EAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHF--SW-QWAFIIEGVLGIIWGV  163 (399)
T ss_pred             HHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhC--Cc-hHHHHHHHHHHHHHHH
Confidence            56778999999999999999999999999999999999999998776541  13 3456666555544433

>PRK03545 putative arabinose transporter; Provisional

Probab=98.12  E-value=8.8e-05  Score=58.86  Aligned_cols=101  Identities=11%  Similarity=-0.008  Sum_probs=72.5

Q ss_pred             hhhhhccccchhHHHHHHHHHHHHH--------------------------------------------HHHHHHHHHhh
Q psy16105         21 YTRLAFRWNEYNYSTFYTAYYFTDF--------------------------------------------LGAVASLFSNA   56 (130)
Q Consensus        21 y~~~~f~W~~~~~g~~~~~~~~~~~--------------------------------------------~~~~~~~~~~~   56 (130)
                      ..++++|+++.+.|+..+...+...                                            .-...+...+.
T Consensus        34 ~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~  113 (390)
T PRK03545         34 DIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWNFTVLLISRIGIAFAHAI  113 (390)
T ss_pred             HHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            3467899999999998776653322                                            00112223345


Q ss_pred             HHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHhccccCCchHHHHHHHHHHHHHH
Q psy16105         57 SFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSPALF  124 (130)
Q Consensus        57 ~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t~~~~pg~~f~~~a~l~~~~~~  124 (130)
                      ..|...+++++..|+||||+..|..+...+++..++|++...+.+.   .-....|++.+.+.+...+
T Consensus       114 ~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~---~gw~~~f~~~~~~~~l~~~  178 (390)
T PRK03545        114 FWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQY---LGWRTTFLAIGGGALITLL  178 (390)
T ss_pred             HHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHH---hcHHHHHHHHHHHHHHHHH
Confidence            6788899999999999999999999999999999999999877653   1223566666665544433

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=98.11  E-value=9.5e-05  Score=59.31  Aligned_cols=97  Identities=13%  Similarity=0.021  Sum_probs=72.5

Q ss_pred             hhhccccchhHHHHHHHHHHHHH--------------------------------------------HHHHHHHHHhhHH
Q psy16105         23 RLAFRWNEYNYSTFYTAYYFTDF--------------------------------------------LGAVASLFSNASF   58 (130)
Q Consensus        23 ~~~f~W~~~~~g~~~~~~~~~~~--------------------------------------------~~~~~~~~~~~~~   58 (130)
                      .+.++|++.+.|...+...+...                                            .-...+...+...
T Consensus        47 ~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~  126 (394)
T PRK10213         47 AQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRACLGLALGGFW  126 (394)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhhHHHH
Confidence            46899999999988766544332                                            1123344456678


Q ss_pred             HHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHhccccCCchHHHHHHHHHHHH
Q psy16105         59 IAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSPA  122 (130)
Q Consensus        59 p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t~~~~pg~~f~~~a~l~~~~  122 (130)
                      |...+++++.+|++|+|+..+......+++..++|++...+.+.   +-....|++.+.+.+++
T Consensus       127 ~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~---~gw~~~f~~~~~l~~~~  187 (394)
T PRK10213        127 AMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGEL---IGWRNVFNAAAVMGVLC  187 (394)
T ss_pred             HHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---cCHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999988765   22234566655554443

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=98.08  E-value=6e-05  Score=59.81  Aligned_cols=70  Identities=13%  Similarity=0.137  Sum_probs=56.5

Q ss_pred             HhhHHHHHHHHHhcCCCc-cchHHHHHHHHHHHHHhHhhHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHH
Q psy16105         54 SNASFIAMRAIISKLTSA-EELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSPALFIF  126 (130)
Q Consensus        54 ~~~~~p~~rs~iSk~v~~-~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t~~~~pg~~f~~~a~l~~~~~~l~  126 (130)
                      .+...++..+.+++..++ +++|+.++..++..+++..++|++...+|+..   -....|++++++.++++++.
T Consensus       317 ~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~---G~~~~f~~~~~~~l~a~~~~  387 (390)
T TIGR02718       317 TGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRF---GYAGGFLSGTVLAVLAILLA  387 (390)
T ss_pred             HHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---ccHHHHHHHHHHHHHHHHHh
Confidence            456668888888888876 88999999999999999999999999999762   23467777777777765543

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=98.08  E-value=7.1e-05  Score=60.13  Aligned_cols=75  Identities=16%  Similarity=-0.027  Sum_probs=62.0

Q ss_pred             HHhhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHhccc-cCCchHHHHHHHHHHHHHHHHH
Q psy16105         53 FSNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLD-FMPSTFLLMSLVLTSPALFIFL  127 (130)
Q Consensus        53 ~~~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t~~-~~pg~~f~~~a~l~~~~~~l~~  127 (130)
                      ..+...|...+++.+.+|+++||+.+|..+....++..++|.+...+++.+-+ ..+..+|...+.+.+...+.+.
T Consensus       310 g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (400)
T PRK11646        310 GSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELPWMMLGIIGLITLLALY  385 (400)
T ss_pred             HHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHH
Confidence            34567788899999999999999999999999999999999999999988644 3577888877777666655543

>TIGR00900 2A0121 H+ Antiporter protein

Probab=98.02  E-value=0.00026  Score=54.40  Aligned_cols=70  Identities=13%  Similarity=0.046  Sum_probs=54.5

Q ss_pred             HHhhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHH
Q psy16105         53 FSNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSPALFI  125 (130)
Q Consensus        53 ~~~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t~~~~pg~~f~~~a~l~~~~~~l  125 (130)
                      ..+...|+..+++++..|++|+|+.+|..+....++.+++|++...+++..  .| ...|++.+...+++.++
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~--g~-~~~~~~~~~~~~~~~~~  174 (365)
T TIGR00900       105 AQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATL--GI-KWAIWVDAVGFAISALL  174 (365)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh--hH-HHHHHHHHHHHHHHHHH
Confidence            346778999999999999999999999999999999999999998887642  12 34556555555444433

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=98.01  E-value=5.1e-05  Score=62.73  Aligned_cols=115  Identities=13%  Similarity=0.139  Sum_probs=84.8

Q ss_pred             ccchhHHHHHhhhhh--ccccchhHHHHHHHHHHHHH-------------------------------------------
Q psy16105         11 YQGEFTVMYLYTRLA--FRWNEYNYSTFYTAYYFTDF-------------------------------------------   45 (130)
Q Consensus        11 ~~g~~~i~~ly~~~~--f~W~~~~~g~~~~~~~~~~~-------------------------------------------   45 (130)
                      +.+....+.+|.+++  +||++.+.|...+.......                                           
T Consensus        26 ~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~~~~~  105 (475)
T TIGR00924        26 YYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYPDLI  105 (475)
T ss_pred             HHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcccHhHH
Confidence            446678888999888  99999999999877654333                                           


Q ss_pred             -HH-HHHHHHHhhHHHHHHHHHhcCCCccc---hHHHHHHHHHHHHHhHhhHHHHHHHHHHhccccCCchHHHHHHHHHH
Q psy16105         46 -LG-AVASLFSNASFIAMRAIISKLTSAEE---LGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTS  120 (130)
Q Consensus        46 -~~-~~~~~~~~~~~p~~rs~iSk~v~~~e---qG~~~~~~~~~~sl~~~i~~~l~~~iy~~t~~~~pg~~f~~~a~l~~  120 (130)
                       .+ ...+...+...|+..+++++..|++|   +++.++......+++..++|++...+.+.   .-....|.+.+...+
T Consensus       106 ~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~---~g~~~~f~~~~~~~~  182 (475)
T TIGR00924       106 FYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAEN---YGYHVGFNLAAVGMV  182 (475)
T ss_pred             HHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHh---cChHHHHHHHHHHHH
Confidence             00 12223345677888999999998876   88899999999999999999999988764   223466777666555


Q ss_pred             HHHHHHHh
Q psy16105        121 PALFIFLC  128 (130)
Q Consensus       121 ~~~~l~~~  128 (130)
                      .+++++.+
T Consensus       183 ~~~l~~~~  190 (475)
T TIGR00924       183 IGLLTFFA  190 (475)
T ss_pred             HHHHHHHH
Confidence            55555443

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK10489 enterobactin exporter EntS; Provisional

Probab=98.01  E-value=0.00024  Score=56.86  Aligned_cols=90  Identities=11%  Similarity=0.072  Sum_probs=68.0

Q ss_pred             chhHHHHHhhhhhccccchhHHHHHHHHHHHHH--------------------------------------------HHH
Q psy16105         13 GEFTVMYLYTRLAFRWNEYNYSTFYTAYYFTDF--------------------------------------------LGA   48 (130)
Q Consensus        13 g~~~i~~ly~~~~f~W~~~~~g~~~~~~~~~~~--------------------------------------------~~~   48 (130)
                      +.......|.+++++.++.+.|+..+..++..+                                            ...
T Consensus       241 ~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (417)
T PRK10489        241 AVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLA  320 (417)
T ss_pred             hHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHH
Confidence            334455667888899999999988776544332                                            111


Q ss_pred             HHHHHHhhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHh
Q psy16105         49 VASLFSNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTA  102 (130)
Q Consensus        49 ~~~~~~~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~  102 (130)
                      ..+...+...|...+++.+.+|+|++|+.+|.......++..++|.+...+.+.
T Consensus       321 ~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~  374 (417)
T PRK10489        321 LFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAM  374 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHH
Confidence            122233455677788999999999999999999999999999999999999875

>TIGR00899 2A0120 sugar efflux transporter

Probab=98.00  E-value=4.4e-05  Score=59.44  Aligned_cols=112  Identities=16%  Similarity=0.105  Sum_probs=78.1

Q ss_pred             ccchhHHHHHhhhhhccccchhHHHHHHHHHHHHH---------------------------------------------
Q psy16105         11 YQGEFTVMYLYTRLAFRWNEYNYSTFYTAYYFTDF---------------------------------------------   45 (130)
Q Consensus        11 ~~g~~~i~~ly~~~~f~W~~~~~g~~~~~~~~~~~---------------------------------------------   45 (130)
                      .......+..|.++++++++.+.|...+...+...                                             
T Consensus        13 ~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   92 (375)
T TIGR00899        13 GALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWNRNYFLLLV   92 (375)
T ss_pred             HHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence            33445667778889999999999999877654333                                             


Q ss_pred             HHHHHHHHHhhHHHHHHHHHhcCCCccchHHH--HHHHHHHHHHhHhhHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Q psy16105         46 LGAVASLFSNASFIAMRAIISKLTSAEELGKV--MSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSPAL  123 (130)
Q Consensus        46 ~~~~~~~~~~~~~p~~rs~iSk~v~~~eqG~~--~~~~~~~~sl~~~i~~~l~~~iy~~t~~~~pg~~f~~~a~l~~~~~  123 (130)
                      .....+.+.+...|...++..+..|+++|++.  .+......+++..++|++...+.+.   .-...+|++.+.+.+...
T Consensus        93 ~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~---~~~~~~f~~~~~~~~~~~  169 (375)
T TIGR00899        93 LGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALG---FGFTVMFLTAALAFVLCG  169 (375)
T ss_pred             HHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHh---cccHHHHHHHHHHHHHHH
Confidence            11122233456778888998888887777754  6888888899999999999888754   223356777766655444


Q ss_pred             HH
Q psy16105        124 FI  125 (130)
Q Consensus       124 ~l  125 (130)
                      ++
T Consensus       170 ~~  171 (375)
T TIGR00899       170 VL  171 (375)
T ss_pred             HH
Confidence            33

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=98.00  E-value=0.0002  Score=55.83  Aligned_cols=102  Identities=14%  Similarity=0.079  Sum_probs=73.2

Q ss_pred             hhhhccccchhHHHHHHHHHHHHH--------------------------------------------HHHHHHHHHhhH
Q psy16105         22 TRLAFRWNEYNYSTFYTAYYFTDF--------------------------------------------LGAVASLFSNAS   57 (130)
Q Consensus        22 ~~~~f~W~~~~~g~~~~~~~~~~~--------------------------------------------~~~~~~~~~~~~   57 (130)
                      .++.+++++++.|+..+...+...                                            .-...+...+..
T Consensus        31 ~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~  110 (385)
T TIGR00710        31 IAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQAFGASAG  110 (385)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcchhHH
Confidence            466799999999988877654333                                            111223334667


Q ss_pred             HHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHH
Q psy16105         58 FIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSPALFIF  126 (130)
Q Consensus        58 ~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t~~~~pg~~f~~~a~l~~~~~~l~  126 (130)
                      .|...+++++..|+||+|+.++..+....++..++|++...+.+.   .-....|++.+.+.+...++.
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~  176 (385)
T TIGR00710       111 SVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVW---LSWHAIFAFLSLAGILLSALI  176 (385)
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cCHHHHHHHHHHHHHHHHHHH
Confidence            899999999999999999999999999999999999999877654   112345555555554444443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=97.97  E-value=0.00023  Score=57.43  Aligned_cols=103  Identities=9%  Similarity=-0.009  Sum_probs=74.3

Q ss_pred             HHHhhhhhccccchhHHHHHHHHHHHHH--------------------------------------------HHHHHHHH
Q psy16105         18 MYLYTRLAFRWNEYNYSTFYTAYYFTDF--------------------------------------------LGAVASLF   53 (130)
Q Consensus        18 ~~ly~~~~f~W~~~~~g~~~~~~~~~~~--------------------------------------------~~~~~~~~   53 (130)
                      .....++.++|++.+.|...+...+...                                            .-...+..
T Consensus        30 ~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~  109 (412)
T TIGR02332        30 AGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFATGPESLYLLRILVGIA  109 (412)
T ss_pred             HHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            3445688999999999999886643332                                            11223444


Q ss_pred             HhhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHhc----cccCCchHHHHHHHHHHH
Q psy16105         54 SNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTAT----LDFMPSTFLLMSLVLTSP  121 (130)
Q Consensus        54 ~~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t----~~~~pg~~f~~~a~l~~~  121 (130)
                      .+...|+..+.+++..|++|||+..+..+...+++..+++++...+.+..    ...|. ..|++.+...+.
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr-~~f~~~~~~~l~  180 (412)
T TIGR02332       110 EAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQ-WLFLLEGFPSVI  180 (412)
T ss_pred             HhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchh-HHHHHHHHHHHH
Confidence            56677888899999999999999999999999999999999998886531    11244 455555555433

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=97.96  E-value=0.00026  Score=56.74  Aligned_cols=69  Identities=16%  Similarity=0.020  Sum_probs=55.3

Q ss_pred             HHHHhhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Q psy16105         51 SLFSNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSPAL  123 (130)
Q Consensus        51 ~~~~~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t~~~~pg~~f~~~a~l~~~~~  123 (130)
                      +...+...|+.++++++.+|+||++|..|..+....++.+++|++...+++..    +..++.+.+.+.+.+.
T Consensus        99 G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~----~~~~~~i~~~~~~~~~  167 (393)
T PRK11195         99 GIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPH----AEAALAVCALIYLLAA  167 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence            44467889999999999999999999999999999999999999999998763    3344555554444443

>PRK11663 regulatory protein UhpC; Provisional

Probab=97.94  E-value=0.00027  Score=57.25  Aligned_cols=97  Identities=9%  Similarity=0.058  Sum_probs=70.8

Q ss_pred             hhhhhccccchhHHHHHHHHHHHHH--------------------------------------------HHHHHHHHHhh
Q psy16105         21 YTRLAFRWNEYNYSTFYTAYYFTDF--------------------------------------------LGAVASLFSNA   56 (130)
Q Consensus        21 y~~~~f~W~~~~~g~~~~~~~~~~~--------------------------------------------~~~~~~~~~~~   56 (130)
                      ..++.+++++.+.|+..+...+...                                            .-...+...+.
T Consensus        48 ~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~  127 (434)
T PRK11663         48 EMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSSSLWAFALLWVLNAFFQGW  127 (434)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHc
Confidence            3455799999999999877654443                                            00112333455


Q ss_pred             HHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHhccccCCchHHHHHHHHHH
Q psy16105         57 SFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTS  120 (130)
Q Consensus        57 ~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t~~~~pg~~f~~~a~l~~  120 (130)
                      ..|...+++++..|++|||+..|..+....++..++|++...+++..  .| ...|++.+.+.+
T Consensus       128 ~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~--gw-~~~f~~~~i~~~  188 (434)
T PRK11663        128 GWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHY--GW-RYGMMIAGIIAI  188 (434)
T ss_pred             cchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--cH-HHHHHHHHHHHH
Confidence            66888999999999999999999999999999999999999887541  23 345566555543

>TIGR00900 2A0121 H+ Antiporter protein

Probab=97.93  E-value=0.00015  Score=55.69  Aligned_cols=87  Identities=11%  Similarity=0.051  Sum_probs=68.1

Q ss_pred             HHHHHhhhhhccccchhHHHHHHHHHHHHH---------------------------------------------HHHHH
Q psy16105         16 TVMYLYTRLAFRWNEYNYSTFYTAYYFTDF---------------------------------------------LGAVA   50 (130)
Q Consensus        16 ~i~~ly~~~~f~W~~~~~g~~~~~~~~~~~---------------------------------------------~~~~~   50 (130)
                      .....|.++.+++++.+.|...+..++..+                                             .....
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (365)
T TIGR00900       232 ALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFAI  311 (365)
T ss_pred             HHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHH
Confidence            455666777899999999988876654433                                             00111


Q ss_pred             HHHHhhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHh
Q psy16105         51 SLFSNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTA  102 (130)
Q Consensus        51 ~~~~~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~  102 (130)
                      +...+...|..++.+.+.+|+|++|+.+|.......++..++|++...+++.
T Consensus       312 g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~  363 (365)
T TIGR00900       312 GVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADH  363 (365)
T ss_pred             HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2224566789999999999999999999999999999999999999988765

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=97.93  E-value=0.00039  Score=54.42  Aligned_cols=98  Identities=16%  Similarity=0.144  Sum_probs=71.0

Q ss_pred             hhhccccchhHHHHHHHHHHHHH--------------------------------------------HHHHHHHHHhhHH
Q psy16105         23 RLAFRWNEYNYSTFYTAYYFTDF--------------------------------------------LGAVASLFSNASF   58 (130)
Q Consensus        23 ~~~f~W~~~~~g~~~~~~~~~~~--------------------------------------------~~~~~~~~~~~~~   58 (130)
                      .+.+|+++.+.|+..+...+...                                            .....+...+...
T Consensus        18 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~   97 (377)
T PRK11102         18 AADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMRFLHGLAAAAAS   97 (377)
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHH
Confidence            34689999999988877654333                                            1122233456678


Q ss_pred             HHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Q psy16105         59 IAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSPAL  123 (130)
Q Consensus        59 p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t~~~~pg~~f~~~a~l~~~~~  123 (130)
                      |...+.+++..|+||||+..+.......++..++|++...+.+..  .| ...|++.+.+.++..
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~--~~-~~~~~~~~~~~~~~~  159 (377)
T PRK11102         98 VVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWF--SW-HAIFWVLALAAILAA  159 (377)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--Ch-HHHHHHHHHHHHHHH
Confidence            889999999999999999999999999999999999988887642  12 235555555554443

>KOG2615|consensus

Probab=97.92  E-value=2e-05  Score=64.39  Aligned_cols=94  Identities=13%  Similarity=0.221  Sum_probs=77.3

Q ss_pred             ccchhHHHHHhhhhhccccchhHHHHHHHHHHHHH---------------------------------------------
Q psy16105         11 YQGEFTVMYLYTRLAFRWNEYNYSTFYTAYYFTDF---------------------------------------------   45 (130)
Q Consensus        11 ~~g~~~i~~ly~~~~f~W~~~~~g~~~~~~~~~~~---------------------------------------------   45 (130)
                      +++.+.....|+..||+.++.|-|..++..++...                                             
T Consensus       277 ~s~~~~t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~~~~~l~  356 (451)
T KOG2615|consen  277 FSGLENTVLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLARTPVVLY  356 (451)
T ss_pred             HHHHHhhHHHhhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhccccchhhh
Confidence            45556666666678999999999999988877665                                             


Q ss_pred             HHH-HHHHHHhhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHhcc
Q psy16105         46 LGA-VASLFSNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATL  104 (130)
Q Consensus        46 ~~~-~~~~~~~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t~  104 (130)
                      ++. .-...+....|++.++..|.+|++|+|.+.|+..++.++++.++|.+...++.+..
T Consensus       357 ~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~Ws~  416 (451)
T KOG2615|consen  357 LGSTLKSFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSWSQ  416 (451)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEEec
Confidence            222 22333567899999999999999999999999999999999999999988887754

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=97.89  E-value=0.00028  Score=53.54  Aligned_cols=105  Identities=11%  Similarity=0.060  Sum_probs=74.5

Q ss_pred             HHHHhhhhhccccchhHHHHHHHHHHHHH--------------------------------------------HHHHHHH
Q psy16105         17 VMYLYTRLAFRWNEYNYSTFYTAYYFTDF--------------------------------------------LGAVASL   52 (130)
Q Consensus        17 i~~ly~~~~f~W~~~~~g~~~~~~~~~~~--------------------------------------------~~~~~~~   52 (130)
                      ....|. ++++.++++.+...+...+...                                            .....+.
T Consensus        21 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~   99 (352)
T cd06174          21 ALPLLA-EDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGL   99 (352)
T ss_pred             hHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence            333444 4569999999998877765544                                            1111222


Q ss_pred             HHhhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHH
Q psy16105         53 FSNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSPALFI  125 (130)
Q Consensus        53 ~~~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t~~~~pg~~f~~~a~l~~~~~~l  125 (130)
                      ..+...|...+.+++..|+|||++.++......+++..++|.+...+.+..-  + ...|++.+.+.++..++
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~  169 (352)
T cd06174         100 GGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLG--W-RWLFLILAILGLLLALL  169 (352)
T ss_pred             ccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh--H-HHHHHHHHHHHHHHHHH
Confidence            3456789999999999999999999999999999999999999998876521  2 23455555555444443

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=97.84  E-value=0.00048  Score=54.62  Aligned_cols=72  Identities=10%  Similarity=-0.013  Sum_probs=54.0

Q ss_pred             hhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHh
Q psy16105         55 NASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSPALFIFLC  128 (130)
Q Consensus        55 ~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t~~~~pg~~f~~~a~l~~~~~~l~~~  128 (130)
                      +...|...++.++.+|++++|+..|.......++..++|++...+++.+  ......++..+.+.+.+.++..+
T Consensus       323 ~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~  394 (406)
T PRK11551        323 VGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALG--RSTVGVIGASIPVILVAALAALL  394 (406)
T ss_pred             HhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccC--CchHHHHHHHHHHHHHHHHHHHH
Confidence            3457888899999999999999999999999999999999999998652  12233444555455555544443

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=97.83  E-value=0.00034  Score=55.38  Aligned_cols=87  Identities=14%  Similarity=0.030  Sum_probs=67.1

Q ss_pred             HHHHHhhhhhccccchhHHHHHHHHHHHHH---------------------------HH---------------------
Q psy16105         16 TVMYLYTRLAFRWNEYNYSTFYTAYYFTDF---------------------------LG---------------------   47 (130)
Q Consensus        16 ~i~~ly~~~~f~W~~~~~g~~~~~~~~~~~---------------------------~~---------------------   47 (130)
                      ..+..|.++++++++.+.|...+...+...                           ++                     
T Consensus        36 ~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  115 (399)
T PRK05122         36 AVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLL  115 (399)
T ss_pred             HHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccchhHHHHH
Confidence            455567788999999999999887765443                           00                     


Q ss_pred             ----HHHHHHHhhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHh
Q psy16105         48 ----AVASLFSNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTA  102 (130)
Q Consensus        48 ----~~~~~~~~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~  102 (130)
                          ...+...+...|+..+.+.+.+|+||+|+..+..+...+++.+++|++...+.+.
T Consensus       116 ~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~  174 (399)
T PRK05122        116 LLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHW  174 (399)
T ss_pred             HHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHc
Confidence                0112223456778888889999999999999999999999999999999888764

>PRK12382 putative transporter; Provisional

Probab=97.82  E-value=0.00068  Score=53.67  Aligned_cols=87  Identities=13%  Similarity=0.029  Sum_probs=66.2

Q ss_pred             HHHHHhhhhhccccchhHHHHHHHHHHHHH---------------------------HHH--------------------
Q psy16105         16 TVMYLYTRLAFRWNEYNYSTFYTAYYFTDF---------------------------LGA--------------------   48 (130)
Q Consensus        16 ~i~~ly~~~~f~W~~~~~g~~~~~~~~~~~---------------------------~~~--------------------   48 (130)
                      .+...|.++++|+|+.+.|...+...+...                           .+.                    
T Consensus        36 p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  115 (392)
T PRK12382         36 PVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALL  115 (392)
T ss_pred             hhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHH
Confidence            445567888999999999999988755443                           000                    


Q ss_pred             -----HHHHHHhhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHh
Q psy16105         49 -----VASLFSNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTA  102 (130)
Q Consensus        49 -----~~~~~~~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~  102 (130)
                           ..+...+...|+..+.+.+.+|+||+|+..|..+...+.+..++|++...+++.
T Consensus       116 ~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~  174 (392)
T PRK12382        116 VVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSH  174 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence                 011122445677788889999999999999999999999999999998887654

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=97.81  E-value=0.00012  Score=56.03  Aligned_cols=81  Identities=12%  Similarity=0.148  Sum_probs=65.1

Q ss_pred             chhHHHHHhhhhhcccc-chhHHHHHHHHHHHHH----------------------------------------------
Q psy16105         13 GEFTVMYLYTRLAFRWN-EYNYSTFYTAYYFTDF----------------------------------------------   45 (130)
Q Consensus        13 g~~~i~~ly~~~~f~W~-~~~~g~~~~~~~~~~~----------------------------------------------   45 (130)
                      ........|.+++++|+ +.+.+...+..++...                                              
T Consensus       224 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (352)
T PF07690_consen  224 GFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSSSPVWLI  303 (352)
T ss_dssp             HHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCHHHHHH
T ss_pred             HhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            34555666778899999 8899987777655543                                              


Q ss_pred             -HHHHHHHHHhhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHH
Q psy16105         46 -LGAVASLFSNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYN   93 (130)
Q Consensus        46 -~~~~~~~~~~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~   93 (130)
                       .....+...+...|..++.+.+.+|+|++|+..|..+..++++..++|
T Consensus       304 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  304 IALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence             223345556778999999999999999999999999999999999987

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK10091 MFS transport protein AraJ; Provisional

Probab=97.80  E-value=0.00055  Score=54.32  Aligned_cols=100  Identities=11%  Similarity=0.021  Sum_probs=71.3

Q ss_pred             hhhhhccccchhHHHHHHHHHHHHH--------------------------------------------HHHHHHHHHhh
Q psy16105         21 YTRLAFRWNEYNYSTFYTAYYFTDF--------------------------------------------LGAVASLFSNA   56 (130)
Q Consensus        21 y~~~~f~W~~~~~g~~~~~~~~~~~--------------------------------------------~~~~~~~~~~~   56 (130)
                      ..++++|+++.+.|+..+...+...                                            .-...+...+.
T Consensus        28 ~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~  107 (382)
T PRK10091         28 ELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSSYLMLAIGRLVSGFPHGA  107 (382)
T ss_pred             HHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhHH
Confidence            3467899999999998877655444                                            00112222344


Q ss_pred             HHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Q psy16105         57 SFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSPAL  123 (130)
Q Consensus        57 ~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t~~~~pg~~f~~~a~l~~~~~  123 (130)
                      ..|...+.+++..|++|+++..+......+++..++|++...+.+..  .| ...|++.+.+.+...
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~--gw-r~~f~~~~~~~~~~~  171 (382)
T PRK10091        108 FFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEF--SW-RYTFLLIAVFNIAVL  171 (382)
T ss_pred             HHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhc--cH-HHHHHHHHHHHHHHH
Confidence            56777888999999999999999999999999999999988776531  13 346666666554443

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=97.79  E-value=0.00071  Score=53.63  Aligned_cols=98  Identities=8%  Similarity=-0.076  Sum_probs=69.7

Q ss_pred             hhhhhccccchhHHHHHHHHHHHHH--------------------------------------------HHHHHHHHHhh
Q psy16105         21 YTRLAFRWNEYNYSTFYTAYYFTDF--------------------------------------------LGAVASLFSNA   56 (130)
Q Consensus        21 y~~~~f~W~~~~~g~~~~~~~~~~~--------------------------------------------~~~~~~~~~~~   56 (130)
                      ..++.+++++++.|+..+...+...                                            .-...+...+.
T Consensus        40 ~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~  119 (406)
T PRK11551         40 RMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLLTGVGLGG  119 (406)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhHHH
Confidence            4467799999999999877654433                                            11222333466


Q ss_pred             HHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHhccccCCchHHHHHHHHHHH
Q psy16105         57 SFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSP  121 (130)
Q Consensus        57 ~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t~~~~pg~~f~~~a~l~~~  121 (130)
                      ..|...+.+++.+|++|+|+..+.......++..+++++...+.+.   .-....|++.+.+...
T Consensus       120 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~  181 (406)
T PRK11551        120 ALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGD---AAWRHIFYVGGVGPLL  181 (406)
T ss_pred             HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---cCHHHHHHHHHHHHHH
Confidence            7889999999999999999999999999999999998887655332   1122456665554433

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=97.79  E-value=0.0012  Score=52.83  Aligned_cols=74  Identities=14%  Similarity=0.038  Sum_probs=57.9

Q ss_pred             HHHHHhhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHH
Q psy16105         50 ASLFSNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSPALFI  125 (130)
Q Consensus        50 ~~~~~~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t~~~~pg~~f~~~a~l~~~~~~l  125 (130)
                      .+.+.....|+..+++++.+|+||||+..+......+++.++++++...+.+.-  .-...+|++.+.+.+.+.+.
T Consensus       104 ~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~--~gw~~~f~i~a~~~l~~~l~  177 (402)
T PRK11902        104 VAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRV--LGWGNTYLLMAGLMLAGALT  177 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcc--cCHHHHHHHHHHHHHHHHHH
Confidence            345567788999999999999999999999999999999999999998887631  12345677766665554443

>TIGR00901 2A0125 AmpG-related permease

Probab=97.78  E-value=0.0013  Score=51.27  Aligned_cols=77  Identities=18%  Similarity=0.244  Sum_probs=58.4

Q ss_pred             HHHHhhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHhcc-cc----CCchHHHHHHHHHHHHHHH
Q psy16105         51 SLFSNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATL-DF----MPSTFLLMSLVLTSPALFI  125 (130)
Q Consensus        51 ~~~~~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t~-~~----~pg~~f~~~a~l~~~~~~l  125 (130)
                      +.......|+..+++++.+|+||||+..|..+...+++.++++++...+++..- +.    --..+|++.+.+.+++.++
T Consensus        94 ~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~  173 (356)
T TIGR00901        94 AFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLV  173 (356)
T ss_pred             HHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHH
Confidence            344566789999999999999999999999999999999999999987765521 11    0235677777766665554


Q ss_pred             HH
Q psy16105        126 FL  127 (130)
Q Consensus       126 ~~  127 (130)
                      ..
T Consensus       174 ~~  175 (356)
T TIGR00901       174 TL  175 (356)
T ss_pred             HH
Confidence            43

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=97.78  E-value=8.5e-05  Score=57.25  Aligned_cols=103  Identities=10%  Similarity=0.078  Sum_probs=72.2

Q ss_pred             HHHhhhhhccccchhHHHHHHHHHHHHH--------------------------------------------HHHHHHHH
Q psy16105         18 MYLYTRLAFRWNEYNYSTFYTAYYFTDF--------------------------------------------LGAVASLF   53 (130)
Q Consensus        18 ~~ly~~~~f~W~~~~~g~~~~~~~~~~~--------------------------------------------~~~~~~~~   53 (130)
                      ..-+.++++++++.+.|+..+...+...                                            .-...+..
T Consensus        17 ~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~   96 (379)
T TIGR00881        17 AMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSLWVMAALWALNGIF   96 (379)
T ss_pred             hhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence            3446678899999999999887665443                                            11122233


Q ss_pred             HhhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHhccccCCchHHHHHHHHHHHH
Q psy16105         54 SNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSPA  122 (130)
Q Consensus        54 ~~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t~~~~pg~~f~~~a~l~~~~  122 (130)
                      .+...|...+++++..|++|+|+..+..+....++..++|++.........+ |. ..|++.+.+.++.
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~  163 (379)
T TIGR00881        97 QGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYS-WH-WVFIVPGIIAIIV  163 (379)
T ss_pred             ccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCC-ch-hHHHHHHHHHHHH
Confidence            4567889999999999999999999999999999999999654444333211 22 3466666555443

>TIGR00891 2A0112 putative sialic acid transporter

Probab=97.76  E-value=0.00028  Score=55.12  Aligned_cols=88  Identities=3%  Similarity=-0.000  Sum_probs=66.2

Q ss_pred             hHHHHHhhhhhccccchhHHHHHHHHHHHHH------------------------HH---------------------HH
Q psy16105         15 FTVMYLYTRLAFRWNEYNYSTFYTAYYFTDF------------------------LG---------------------AV   49 (130)
Q Consensus        15 ~~i~~ly~~~~f~W~~~~~g~~~~~~~~~~~------------------------~~---------------------~~   49 (130)
                      ......|.++++++++.+.+...+..++..+                        ..                     ..
T Consensus       258 ~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (405)
T TIGR00891       258 QDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFF  337 (405)
T ss_pred             hhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHH
Confidence            3445667788899999999988766554433                        00                     01


Q ss_pred             HHHHHhhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHh
Q psy16105         50 ASLFSNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTA  102 (130)
Q Consensus        50 ~~~~~~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~  102 (130)
                      .+.+.....+...+.+++.+|++++|+.+|....+..++..++|++...+++.
T Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~  390 (405)
T TIGR00891       338 QQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQR  390 (405)
T ss_pred             HHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            11122334567788999999999999999999999999999999999999876

>TIGR00891 2A0112 putative sialic acid transporter

Probab=97.75  E-value=0.0012  Score=51.63  Aligned_cols=102  Identities=11%  Similarity=0.050  Sum_probs=71.2

Q ss_pred             HhhhhhccccchhHHHHHHHHHHHHH--------------------------------------------HHHHHHHHHh
Q psy16105         20 LYTRLAFRWNEYNYSTFYTAYYFTDF--------------------------------------------LGAVASLFSN   55 (130)
Q Consensus        20 ly~~~~f~W~~~~~g~~~~~~~~~~~--------------------------------------------~~~~~~~~~~   55 (130)
                      -..++.+++++.+.|+..+...+...                                            .-.+.+...+
T Consensus        36 ~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~  115 (405)
T TIGR00891        36 AEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMG  115 (405)
T ss_pred             HHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhh
Confidence            34577899999999998877654433                                            0112223345


Q ss_pred             hHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHhccccCCchHHHHHHHHHHHH
Q psy16105         56 ASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSPA  122 (130)
Q Consensus        56 ~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t~~~~pg~~f~~~a~l~~~~  122 (130)
                      ...|...+.+++..|++|||+..+..+....++..+++++...+.+..-..|. ..|++.+...+..
T Consensus       116 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~-~~f~~~~~~~~~~  181 (405)
T TIGR00891       116 GEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWR-ALFFISILPIIFA  181 (405)
T ss_pred             hhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHH-HHHHHHHHHHHHH
Confidence            67788899999999999999999999999999999999988877554211122 3455544443333

>PRK15011 sugar efflux transporter B; Provisional

Probab=97.75  E-value=0.0014  Score=52.29  Aligned_cols=109  Identities=13%  Similarity=0.046  Sum_probs=73.1

Q ss_pred             hhHHHHHhhhhhccccchhHHHHHHHHHHHHH---------------------------------------------HHH
Q psy16105         14 EFTVMYLYTRLAFRWNEYNYSTFYTAYYFTDF---------------------------------------------LGA   48 (130)
Q Consensus        14 ~~~i~~ly~~~~f~W~~~~~g~~~~~~~~~~~---------------------------------------------~~~   48 (130)
                      .......|.+++++||+.++|...+...+...                                             ...
T Consensus        34 ~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  113 (393)
T PRK15011         34 QTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGRSDKRGDRKSLIVFCCLLGVLACTLFAWNRNYFVLLFVGV  113 (393)
T ss_pred             HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            35567778899999999999998654432221                                             111


Q ss_pred             HHHHHHhhHHHHHHHHHhcCCCccch--HHHHHHHHHHHHHhHhhHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHH
Q psy16105         49 VASLFSNASFIAMRAIISKLTSAEEL--GKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSPALFI  125 (130)
Q Consensus        49 ~~~~~~~~~~p~~rs~iSk~v~~~eq--G~~~~~~~~~~sl~~~i~~~l~~~iy~~t~~~~pg~~f~~~a~l~~~~~~l  125 (130)
                      ..+.++....|...++..+..+++++  ++..+..+...+++.+++|++...+.+..  .| ...|++.+.+.++..++
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~--gw-~~~f~~~~~~~~~~~~~  189 (393)
T PRK15011        114 FLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGF--SF-TVMYLSAAVAFIVCGVM  189 (393)
T ss_pred             HHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhc--Ch-HHHHHHHHHHHHHHHHH
Confidence            22333456677778888777766544  45567888889999999999999887641  23 36777777665544433

>TIGR00895 2A0115 benzoate transport

Probab=97.74  E-value=0.00031  Score=54.59  Aligned_cols=83  Identities=10%  Similarity=0.026  Sum_probs=64.2

Q ss_pred             HhhhhhccccchhHHHHHHHHHHHHH--------------------------------------------HHHHHHHHHh
Q psy16105         20 LYTRLAFRWNEYNYSTFYTAYYFTDF--------------------------------------------LGAVASLFSN   55 (130)
Q Consensus        20 ly~~~~f~W~~~~~g~~~~~~~~~~~--------------------------------------------~~~~~~~~~~   55 (130)
                      .+..+.+++++.+.|+..+...+..+                                            ...+.+...+
T Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  120 (398)
T TIGR00895        41 PAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLG  120 (398)
T ss_pred             HHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcccc
Confidence            34467799999999998877644332                                            1112222345


Q ss_pred             hHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHh
Q psy16105         56 ASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTA  102 (130)
Q Consensus        56 ~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~  102 (130)
                      ...|...+.+++..|+++||+..|.......++..++|.+...+.+.
T Consensus       121 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~  167 (398)
T TIGR00895       121 GLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPV  167 (398)
T ss_pred             cchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhc
Confidence            67899999999999999999999999999999999999998877654

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=97.73  E-value=0.00052  Score=55.49  Aligned_cols=83  Identities=10%  Similarity=0.053  Sum_probs=64.6

Q ss_pred             HHhhhhhccccchhHHHHHHHHHHHHH--------------------------------------------HHHHHHHHH
Q psy16105         19 YLYTRLAFRWNEYNYSTFYTAYYFTDF--------------------------------------------LGAVASLFS   54 (130)
Q Consensus        19 ~ly~~~~f~W~~~~~g~~~~~~~~~~~--------------------------------------------~~~~~~~~~   54 (130)
                      .-...+.+++++++.|+..+...+...                                            .-...+...
T Consensus        25 ~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~  104 (485)
T TIGR00711        25 IPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGG  104 (485)
T ss_pred             HHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHhhh
Confidence            334466799999999988777654443                                            011223345


Q ss_pred             hhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHH
Q psy16105         55 NASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYT  101 (130)
Q Consensus        55 ~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~  101 (130)
                      +...|...+++++.+|++|||+.++..+....++..++|.+...+.+
T Consensus       105 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  151 (485)
T TIGR00711       105 GPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIE  151 (485)
T ss_pred             hhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhcc
Confidence            67789999999999999999999999999999999999999887765

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=97.72  E-value=0.00059  Score=57.61  Aligned_cols=79  Identities=19%  Similarity=0.115  Sum_probs=67.8

Q ss_pred             HHHHHHHHHhhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHH
Q psy16105         46 LGAVASLFSNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSPALFI  125 (130)
Q Consensus        46 ~~~~~~~~~~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t~~~~pg~~f~~~a~l~~~~~~l  125 (130)
                      ...+.++.+.+..|+.++++.++||+||..+..+.++...++++++||.+...++..   .-+...|.+.+..+++.+..
T Consensus       109 ~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~---~G~~~~f~inalsfl~~i~~  185 (524)
T PF05977_consen  109 LTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAF---FGAAAAFLINALSFLISILA  185 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence            445677778999999999999999999999999999999999999999999999876   45677888888877666555


Q ss_pred             HH
Q psy16105        126 FL  127 (130)
Q Consensus       126 ~~  127 (130)
                      +.
T Consensus       186 l~  187 (524)
T PF05977_consen  186 LL  187 (524)
T ss_pred             HH
Confidence            44

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=97.71  E-value=0.00048  Score=52.98  Aligned_cols=64  Identities=9%  Similarity=0.060  Sum_probs=51.4

Q ss_pred             HHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Q psy16105         57 SFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSPAL  123 (130)
Q Consensus        57 ~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t~~~~pg~~f~~~a~l~~~~~  123 (130)
                      ..+...+++++.+|++|+|+.+|.......++..++|++...+++..   -....|.+.+++.++++
T Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~---g~~~~f~~~~~~~~~~~  375 (377)
T TIGR00890       312 TISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEI---GFEYTFIVTGAFALTSL  375 (377)
T ss_pred             chhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhh---chhhHHHHHHHHHHHhc
Confidence            34566778899999999999999999999999999999999888652   23456777776666554

>PRK03633 putative MFS family transporter protein; Provisional

Probab=97.69  E-value=0.0022  Score=50.81  Aligned_cols=72  Identities=11%  Similarity=0.094  Sum_probs=56.4

Q ss_pred             HhhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHh
Q psy16105         54 SNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSPALFIFLC  128 (130)
Q Consensus        54 ~~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t~~~~pg~~f~~~a~l~~~~~~l~~~  128 (130)
                      .....|...+.+++.+|+||++...+......+++..++|++...+.+..   -....|.+.+.+.+...+...|
T Consensus       299 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~---g~~~~f~~~~~~~l~~~~~~~~  370 (381)
T PRK03633        299 GFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNY---SDNLLFIMIASVSFIYLLMLLR  370 (381)
T ss_pred             HHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CccHHHHHHHHHHHHHHHHHHh
Confidence            34567999999999999999999988888889999999999999998762   2345666766666666555544

>PRK10489 enterobactin exporter EntS; Provisional

Probab=97.67  E-value=0.0013  Score=52.53  Aligned_cols=70  Identities=16%  Similarity=0.015  Sum_probs=54.3

Q ss_pred             HhhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHH
Q psy16105         54 SNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSPALFIF  126 (130)
Q Consensus        54 ~~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t~~~~pg~~f~~~a~l~~~~~~l~  126 (130)
                      .+...|+..+.+.+.+|++|+++..+......+++..++|++...+++.   ..+...|++.+...+.+.++.
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~---~~~~~~~~~~~~~~~~~~~~~  193 (417)
T PRK10489        124 GSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAA---GGVAWNYGLAAAGTFITLLPL  193 (417)
T ss_pred             HHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHHH
Confidence            3456788899999999999999999999999999999999999988764   223455666666655554443

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=97.66  E-value=0.00055  Score=55.63  Aligned_cols=64  Identities=14%  Similarity=0.088  Sum_probs=50.4

Q ss_pred             HhhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHhccccCCchHHHHHHHHH
Q psy16105         54 SNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLT  119 (130)
Q Consensus        54 ~~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t~~~~pg~~f~~~a~l~  119 (130)
                      .+...|+..+.+++..|++|+|+..|.......++..++|++...+.+... .|+. +|++.+.+.
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~-gw~~-~f~i~~~~~  208 (465)
T TIGR00894       145 QGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWG-GWPM-IFYVFGIVG  208 (465)
T ss_pred             cccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CCCe-ehhhhhHHH
Confidence            456688899999999999999999999999999999999999988875421 2433 455544444

>PRK03545 putative arabinose transporter; Provisional

Probab=97.64  E-value=0.0026  Score=50.44  Aligned_cols=105  Identities=14%  Similarity=0.001  Sum_probs=74.2

Q ss_pred             HHHhhhhhccccchhHHHHHHHHHHHHH--------------------------------------------HHHHHHHH
Q psy16105         18 MYLYTRLAFRWNEYNYSTFYTAYYFTDF--------------------------------------------LGAVASLF   53 (130)
Q Consensus        18 ~~ly~~~~f~W~~~~~g~~~~~~~~~~~--------------------------------------------~~~~~~~~   53 (130)
                      ...|.++++++++++.|...+..++..+                                            .....+..
T Consensus       228 ~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~  307 (390)
T PRK03545        228 IEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLIAIALLLVCLLLLLPAANSEWHLSVLSIFWGIA  307 (390)
T ss_pred             HHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence            3455677899999999988766554433                                            00111111


Q ss_pred             HhhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHH
Q psy16105         54 SNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSPALFIF  126 (130)
Q Consensus        54 ~~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t~~~~pg~~f~~~a~l~~~~~~l~  126 (130)
                      .....|...+.+.+..| |++|+..|..+....++..++|++...+++.   +-....|.+.+.+.+.++++.
T Consensus       308 ~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~---~g~~~~~~~~~~~~~~~~~~~  376 (390)
T PRK03545        308 IMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLH---LGLSSIGYVGAALALAALVWS  376 (390)
T ss_pred             HhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cChhHHHHHHHHHHHHHHHHH
Confidence            23345777888887765 6899999999999999999999999999966   334467777777777666654

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=97.63  E-value=0.0016  Score=51.67  Aligned_cols=109  Identities=11%  Similarity=0.104  Sum_probs=74.0

Q ss_pred             chhHHHHHhhhhhccccchhHHHHHHHHHHHHH-------------------------------------------HH-H
Q psy16105         13 GEFTVMYLYTRLAFRWNEYNYSTFYTAYYFTDF-------------------------------------------LG-A   48 (130)
Q Consensus        13 g~~~i~~ly~~~~f~W~~~~~g~~~~~~~~~~~-------------------------------------------~~-~   48 (130)
                      +.......|.++ .+++++++|+..+...+..+                                           .. .
T Consensus       223 ~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (382)
T PRK11128        223 AYYGFSAIYWQA-AGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQI  301 (382)
T ss_pred             hHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            344555567654 89999999998876654333                                           10 1


Q ss_pred             HHHHHHhhHHHHHHHHHhcCCCccchHHHHHHHH-HHHHHhHhhHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHH
Q psy16105         49 VASLFSNASFIAMRAIISKLTSAEELGKVMSAFM-LFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSPALFIFL  127 (130)
Q Consensus        49 ~~~~~~~~~~p~~rs~iSk~v~~~eqG~~~~~~~-~~~sl~~~i~~~l~~~iy~~t~~~~pg~~f~~~a~l~~~~~~l~~  127 (130)
                      ..+...+...|.......+. +++|+|+.++... ....++..++|.+...+++..    ...+|+..+++.++++++..
T Consensus       302 l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~----g~~~~~~~~~~~~~~~~~~~  376 (382)
T PRK11128        302 LHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHL----GAGVFWVMALVALPALFIRP  376 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----cHHHHHHHHHHHHHHHHHHH
Confidence            11222355678888888886 7888899999887 445667788999999998763    23567777777777666543

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=97.61  E-value=0.0016  Score=51.68  Aligned_cols=111  Identities=11%  Similarity=0.159  Sum_probs=78.1

Q ss_pred             ccccchhHHHHHhhhhhccccchhHHHHHHHHHHHHH----------------------------------------HHH
Q psy16105          9 GPYQGEFTVMYLYTRLAFRWNEYNYSTFYTAYYFTDF----------------------------------------LGA   48 (130)
Q Consensus         9 ~~~~g~~~i~~ly~~~~f~W~~~~~g~~~~~~~~~~~----------------------------------------~~~   48 (130)
                      .+.....+....|.++ +|+++.++|+..+...+..+                                        ...
T Consensus       219 ~~~~~~~~~~~~~l~~-~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  297 (382)
T TIGR00902       219 GAHAAYYGFSAIYWQA-AGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIF  297 (382)
T ss_pred             HHHHHHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHH
Confidence            3444555666777765 89999999998876543333                                        001


Q ss_pred             HHHHH----HhhHHHHHHHHHhcCCCccchHHHHHHHH-HHHHHhHhhHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Q psy16105         49 VASLF----SNASFIAMRAIISKLTSAEELGKVMSAFM-LFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSPAL  123 (130)
Q Consensus        49 ~~~~~----~~~~~p~~rs~iSk~v~~~eqG~~~~~~~-~~~sl~~~i~~~l~~~iy~~t~~~~pg~~f~~~a~l~~~~~  123 (130)
                      ....+    -++..|+.-..+++. |+++|++.|+..+ ....++..++|.+...+|+..   -+ ..|+..+++.+.++
T Consensus       298 ~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~---g~-~~~~~~~~~~~~~~  372 (382)
T TIGR00902       298 LLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTL---GA-GTFVFMAIIAAAAF  372 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cH-HHHHHHHHHHHHHH
Confidence            11112    256778888889988 9999999999976 456799999999999999873   22 45777777776665


Q ss_pred             HH
Q psy16105        124 FI  125 (130)
Q Consensus       124 ~l  125 (130)
                      ++
T Consensus       373 ~~  374 (382)
T TIGR00902       373 FL  374 (382)
T ss_pred             HH
Confidence            44

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=97.61  E-value=0.00057  Score=55.93  Aligned_cols=68  Identities=15%  Similarity=0.117  Sum_probs=52.8

Q ss_pred             HhhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Q psy16105         54 SNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSPAL  123 (130)
Q Consensus        54 ~~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t~~~~pg~~f~~~a~l~~~~~  123 (130)
                      .+...|...+++++.+|++++|+.+|..+....++..++|++...+++..-+  ....|.+.+++.+.+.
T Consensus       347 ~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~--~~~~f~~~~~~~li~~  414 (455)
T TIGR00892       347 FGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKN--YKYIFYASGSIVVSAG  414 (455)
T ss_pred             hchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCC--cchHHHHhhHHHHHHH
Confidence            3566788899999999999999999999999999999999999988765211  2245555555554443

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=97.60  E-value=0.0023  Score=54.11  Aligned_cols=112  Identities=13%  Similarity=0.070  Sum_probs=81.3

Q ss_pred             chhHHHHHhhhhhccccchhHHHHHHHHHHHHH--------------------------------------------HHH
Q psy16105         13 GEFTVMYLYTRLAFRWNEYNYSTFYTAYYFTDF--------------------------------------------LGA   48 (130)
Q Consensus        13 g~~~i~~ly~~~~f~W~~~~~g~~~~~~~~~~~--------------------------------------------~~~   48 (130)
                      ....++.++.|+.++=++..+|+..+..++-.+                                            ...
T Consensus       236 a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~  315 (524)
T PF05977_consen  236 AVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALF  315 (524)
T ss_pred             HHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence            345667788999999999999999988765544                                            112


Q ss_pred             HHHHHHhhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHH
Q psy16105         49 VASLFSNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSPALFIFL  127 (130)
Q Consensus        49 ~~~~~~~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t~~~~pg~~f~~~a~l~~~~~~l~~  127 (130)
                      +.+..........++.+-+.+|++.+|+++|+.+.+...+.-+++.+...+-+.   .-....+.++++..+++.++..
T Consensus       316 l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~---~g~~~al~~a~~~lll~~~~~~  391 (524)
T PF05977_consen  316 LAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADH---FGVRTALLIAGAALLLSALIAL  391 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCHHHHHHHHHHHHHHHHHHHH
Confidence            223334566777888889999999999999999998888888888877776554   2334556666666555554443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00889 2A0110 nucleoside transporter

Probab=97.59  E-value=0.0016  Score=52.88  Aligned_cols=70  Identities=9%  Similarity=0.019  Sum_probs=52.5

Q ss_pred             hhHHHHHHHHHhcCCCccchHHHHHHHH-HHHHHhHhhHHHHHHHHHHhccc---cCCchHHHHHHHHHHHHHH
Q psy16105         55 NASFIAMRAIISKLTSAEELGKVMSAFM-LFEAIAPMIYNPIYNAVYTATLD---FMPSTFLLMSLVLTSPALF  124 (130)
Q Consensus        55 ~~~~p~~rs~iSk~v~~~eqG~~~~~~~-~~~sl~~~i~~~l~~~iy~~t~~---~~pg~~f~~~a~l~~~~~~  124 (130)
                      +...|+....+++..|+++||+.+|..+ ...+++..++|++...+++.+-+   +-....|.+.+++.+.+.+
T Consensus       323 ~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~  396 (418)
T TIGR00889       323 DFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAV  396 (418)
T ss_pred             HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHH
Confidence            3567888889999999999999999997 67899999999999999987422   1122455555555444433

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00897 2A0118 polyol permease family

Probab=97.59  E-value=0.0036  Score=50.08  Aligned_cols=65  Identities=12%  Similarity=0.092  Sum_probs=51.2

Q ss_pred             HHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHhc
Q psy16105         61 MRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSPALFIFLCH  129 (130)
Q Consensus        61 ~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t~~~~pg~~f~~~a~l~~~~~~l~~~~  129 (130)
                      ..+.+++ .+|+++|+.+|..+..+.++..++|++...+++..   -...+|++.+++.+++.++..|+
T Consensus       336 ~~~~~~~-~~~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~---g~~~~~~~~a~~~~i~~~~~~~~  400 (402)
T TIGR00897       336 LAAVFPT-LAPKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFF---GAIGVVWIFAALYVVSAFLTAFI  400 (402)
T ss_pred             HHHHHHh-hCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---chHHHHHHHHHHHHHHHHHHHHh
Confidence            3455655 46779999999999999999999999999998862   23467777777787777776664

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK03699 putative transporter; Provisional

Probab=97.59  E-value=0.0021  Score=51.17  Aligned_cols=102  Identities=12%  Similarity=0.039  Sum_probs=69.8

Q ss_pred             hhhhccccchhHHHHHHHHHHHHH--------------------------------------------HHHHHHHHHhhH
Q psy16105         22 TRLAFRWNEYNYSTFYTAYYFTDF--------------------------------------------LGAVASLFSNAS   57 (130)
Q Consensus        22 ~~~~f~W~~~~~g~~~~~~~~~~~--------------------------------------------~~~~~~~~~~~~   57 (130)
                      .++.++||+++.|...+...+...                                            .-...+...+..
T Consensus        33 i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~  112 (394)
T PRK03699         33 IAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMFSHSLALFSIAMFVLGVVSGIT  112 (394)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhhHhh
Confidence            466899999999998876543322                                            001122234556


Q ss_pred             HHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHH
Q psy16105         58 FIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSPALFI  125 (130)
Q Consensus        58 ~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t~~~~pg~~f~~~a~l~~~~~~l  125 (130)
                      .|...+.+++..|++|||+..+......+++..++|++...+.....+ |+ .+|.+.+.+.+...++
T Consensus       113 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~g-w~-~~f~~~~~~~~~~~~~  178 (394)
T PRK03699        113 MSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIE-WY-WVYACIGLVYVAIFIL  178 (394)
T ss_pred             ccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-HH-HHHHHHHHHHHHHHHH
Confidence            677888999999999999999999888899999999988877654322 33 4555555555444433

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=97.57  E-value=0.00058  Score=56.37  Aligned_cols=94  Identities=10%  Similarity=0.060  Sum_probs=75.4

Q ss_pred             HHHHHhhhhhccccchhHHHHHHHHHHHHH--------------------------------------------HHHHHH
Q psy16105         16 TVMYLYTRLAFRWNEYNYSTFYTAYYFTDF--------------------------------------------LGAVAS   51 (130)
Q Consensus        16 ~i~~ly~~~~f~W~~~~~g~~~~~~~~~~~--------------------------------------------~~~~~~   51 (130)
                      .....|.+..+||+..|...+....++..+                                            .+..++
T Consensus       273 ~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g  352 (438)
T COG2270         273 AMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVG  352 (438)
T ss_pred             HHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHH
Confidence            334567777888888887777655544443                                            556677


Q ss_pred             HHHhhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHhccccCCc
Q psy16105         52 LFSNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPS  109 (130)
Q Consensus        52 ~~~~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t~~~~pg  109 (130)
                      .+.|-.+...||...|+||++|-|+.||..+..+-.+.+.+|.+.+.+=+.|-+.--|
T Consensus       353 ~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g  410 (438)
T COG2270         353 TSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAG  410 (438)
T ss_pred             HhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhH
Confidence            7788999999999999999999999999999999999999999999887666554434

>PRK03893 putative sialic acid transporter; Provisional

Probab=97.57  E-value=0.00084  Score=54.67  Aligned_cols=88  Identities=7%  Similarity=0.005  Sum_probs=64.9

Q ss_pred             hHHHHHhhhhhccccchhHHHHHHHHHHHHH---------------------------HH---------------HHH--
Q psy16105         15 FTVMYLYTRLAFRWNEYNYSTFYTAYYFTDF---------------------------LG---------------AVA--   50 (130)
Q Consensus        15 ~~i~~ly~~~~f~W~~~~~g~~~~~~~~~~~---------------------------~~---------------~~~--   50 (130)
                      +.....|.++.+++++.+.|...+...+..+                           +.               ...  
T Consensus       295 ~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (496)
T PRK03893        295 QALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLLF  374 (496)
T ss_pred             HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence            4556778888999999999998877654443                           00               000  


Q ss_pred             --HHHHhhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHh
Q psy16105         51 --SLFSNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTA  102 (130)
Q Consensus        51 --~~~~~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~  102 (130)
                        +.+.....+...+.+++.+|++++|+.+|.......++..++|++...+.+.
T Consensus       375 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~  428 (496)
T PRK03893        375 FQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQR  428 (496)
T ss_pred             HHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhcc
Confidence              0011122455667888999999999999999999999999999999988875

>PRK10504 putative transporter; Provisional

Probab=97.56  E-value=0.0023  Score=51.95  Aligned_cols=67  Identities=10%  Similarity=0.076  Sum_probs=51.5

Q ss_pred             HhhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Q psy16105         54 SNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSPAL  123 (130)
Q Consensus        54 ~~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t~~~~pg~~f~~~a~l~~~~~  123 (130)
                      .+...|...+.+++..|++++|+.+|......+++..++|++...+.+..  .| ...|.+...+..+..
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~--gw-~~~f~~~~~~~~l~~  178 (471)
T PRK10504        112 GAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYA--SW-HWIFLINIPVGIIGA  178 (471)
T ss_pred             hHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhc--cH-HHHHHHHHHHHHHHH
Confidence            45567889999999999999999999999999999999999998887642  12 235555554444333

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=97.55  E-value=0.0014  Score=43.24  Aligned_cols=75  Identities=16%  Similarity=0.206  Sum_probs=56.8

Q ss_pred             HHHHHHhhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHH
Q psy16105         49 VASLFSNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSPALFIF  126 (130)
Q Consensus        49 ~~~~~~~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t~~~~pg~~f~~~a~l~~~~~~l~  126 (130)
                      ..+...+...|...+.+++..|++++|+..+.......++..++|.+...+.+.   .-....|++.+.+...+.+..
T Consensus        60 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~  134 (141)
T TIGR00880        60 LQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQF---LGWRAPFLFLAILALAAFILL  134 (141)
T ss_pred             HHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcc---cchHHHHHHHHHHHHHHHHHH
Confidence            344455677899999999999999999999999999999999999999988743   112345666555555544443

>KOG2532|consensus

Probab=97.53  E-value=0.0012  Score=55.03  Aligned_cols=65  Identities=17%  Similarity=0.275  Sum_probs=52.9

Q ss_pred             HHhhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHhcccc-CCchHHHHHHHHH
Q psy16105         53 FSNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDF-MPSTFLLMSLVLT  119 (130)
Q Consensus        53 ~~~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t~~~-~pg~~f~~~a~l~  119 (130)
                      ..+...|++.++.+|..|++|+++..++..+-..++++++-|+.+.+=+.  +. ||...|+.+..-.
T Consensus       141 ~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s--~~GW~sifY~~g~~g~  206 (466)
T KOG2532|consen  141 GQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCES--SLGWPSIFYVFGIVGL  206 (466)
T ss_pred             HHhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcc--CCCCchHHHHHHHHHH
Confidence            34678999999999999999999999999999999999999999888655  33 7765555444333

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=97.52  E-value=0.003  Score=55.50  Aligned_cols=76  Identities=11%  Similarity=0.056  Sum_probs=62.7

Q ss_pred             HHHHHhhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHhc
Q psy16105         50 ASLFSNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSPALFIFLCH  129 (130)
Q Consensus        50 ~~~~~~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t~~~~pg~~f~~~a~l~~~~~~l~~~~  129 (130)
                      .+.+.+...|.+.+.++..+|.++||+.+|.......++.+++|++...++..    .+..||++.+++.+++.++..++
T Consensus       658 ~g~~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~----~~~~pf~i~a~~lll~~ll~~~L  733 (742)
T TIGR01299       658 FGGLSIAAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGI----TKAAPILFASAALACGGLLALKL  733 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhHHHHHHHHHHHHHHHHHHHhC
Confidence            34445667889999999999999999999999999999999999999888765    25678888888777766665543

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=97.52  E-value=0.0011  Score=59.84  Aligned_cols=91  Identities=10%  Similarity=0.037  Sum_probs=72.2

Q ss_pred             cchhHHHHHhhhhhccccchhHHHHHHHHHHHHH--------------------------------HH------------
Q psy16105         12 QGEFTVMYLYTRLAFRWNEYNYSTFYTAYYFTDF--------------------------------LG------------   47 (130)
Q Consensus        12 ~g~~~i~~ly~~~~f~W~~~~~g~~~~~~~~~~~--------------------------------~~------------   47 (130)
                      .+....+..|.++.++.++.++|.+.+..++..+                                +.            
T Consensus       242 ~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  321 (1140)
T PRK06814        242 AVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQ  321 (1140)
T ss_pred             HHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhccccccccccc
Confidence            3445667888999999999999999877654443                                00            


Q ss_pred             --------------------HHHHHHHhhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHh
Q psy16105         48 --------------------AVASLFSNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTA  102 (130)
Q Consensus        48 --------------------~~~~~~~~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~  102 (130)
                                          ..++.+.+...+.+.+++.+.+|++++|+++|+.+....++..+++++...++..
T Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~  396 (1140)
T PRK06814        322 LKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQAL  396 (1140)
T ss_pred             ccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                                0123334566778999999999999999999999999999999999999988754

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=97.51  E-value=0.001  Score=51.16  Aligned_cols=90  Identities=12%  Similarity=0.102  Sum_probs=64.9

Q ss_pred             chhHHHHHhhhhhccccchhHHHHHHHHHHHHH-----------------------------------------------
Q psy16105         13 GEFTVMYLYTRLAFRWNEYNYSTFYTAYYFTDF-----------------------------------------------   45 (130)
Q Consensus        13 g~~~i~~ly~~~~f~W~~~~~g~~~~~~~~~~~-----------------------------------------------   45 (130)
                      +.......|.++++++++.+.+...+...+..+                                               
T Consensus       234 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (379)
T TIGR00881       234 GILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAANPLMD  313 (379)
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCcchhHHHH
Confidence            344455677788899999998887766543322                                               


Q ss_pred             --HHHHHHHHHhhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHh
Q psy16105         46 --LGAVASLFSNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTA  102 (130)
Q Consensus        46 --~~~~~~~~~~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~  102 (130)
                        .....+.+.....+...+..++.+|++++|+.+|+.+....++..++|++...+.+.
T Consensus       314 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~  372 (379)
T TIGR00881       314 LICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADG  372 (379)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHh
Confidence              000111112233455667889999999999999999999999999999999988775

>PRK03633 putative MFS family transporter protein; Provisional

Probab=97.51  E-value=0.0039  Score=49.36  Aligned_cols=87  Identities=11%  Similarity=0.216  Sum_probs=65.3

Q ss_pred             hHHHHHhhhhhccccchhHHHHHHHHHHHHH--------------------------------------------HHHHH
Q psy16105         15 FTVMYLYTRLAFRWNEYNYSTFYTAYYFTDF--------------------------------------------LGAVA   50 (130)
Q Consensus        15 ~~i~~ly~~~~f~W~~~~~g~~~~~~~~~~~--------------------------------------------~~~~~   50 (130)
                      ......|.+ ++|+++.+.|...+...+...                                            .-...
T Consensus        26 ~~~lp~~~~-~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~  104 (381)
T PRK03633         26 NTLVPLWLA-QEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGLMVGFWSWLAWRFVA  104 (381)
T ss_pred             HHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            344445554 689999999999988765443                                            11112


Q ss_pred             HHHHhhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHh
Q psy16105         51 SLFSNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTA  102 (130)
Q Consensus        51 ~~~~~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~  102 (130)
                      +...+...|...+.+.+..+++|+|+.+|......+++..++|++...+.+.
T Consensus       105 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~  156 (381)
T PRK03633        105 GIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTE  156 (381)
T ss_pred             HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            2233556777788888999999999999999999999999999999887654

>TIGR00895 2A0115 benzoate transport

Probab=97.48  E-value=0.0015  Score=50.66  Aligned_cols=49  Identities=8%  Similarity=0.053  Sum_probs=43.0

Q ss_pred             HHHHhhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHH
Q psy16105         51 SLFSNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAV   99 (130)
Q Consensus        51 ~~~~~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~i   99 (130)
                      +...+...|...+.+++.+|++++|+.+|.......++..++|++...+
T Consensus       349 g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       349 GFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             HHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence            3345677899999999999999999999999999999999999987754

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=97.47  E-value=0.0053  Score=49.18  Aligned_cols=58  Identities=12%  Similarity=0.038  Sum_probs=43.6

Q ss_pred             HHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHhccccCCchHHHHHHHHH
Q psy16105         59 IAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLT  119 (130)
Q Consensus        59 p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t~~~~pg~~f~~~a~l~  119 (130)
                      +...+.+++..|++|||+..+..+....++.++++++...+-+.  ..|.. .|++.+.+.
T Consensus        97 ~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~--~gWr~-~f~~~~~l~  154 (368)
T TIGR00903        97 LNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTA--GGLQL-LIIPIAAVA  154 (368)
T ss_pred             HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--cchHH-HHHHHHHHH
Confidence            34456668899999999999999999999999999988887542  23554 444444444

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK03893 putative sialic acid transporter; Provisional

Probab=97.47  E-value=0.0042  Score=50.61  Aligned_cols=83  Identities=8%  Similarity=0.064  Sum_probs=64.0

Q ss_pred             HHhhhhhccccchhHHHHHHHHHHHHH--------------------------------------------HHHHHHHHH
Q psy16105         19 YLYTRLAFRWNEYNYSTFYTAYYFTDF--------------------------------------------LGAVASLFS   54 (130)
Q Consensus        19 ~ly~~~~f~W~~~~~g~~~~~~~~~~~--------------------------------------------~~~~~~~~~   54 (130)
                      .-+.++.+++++.+.+...+...+...                                            .....+...
T Consensus        43 ~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~  122 (496)
T PRK03893         43 LTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFAPGYWTLFIARLVIGMGM  122 (496)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            344567899999999988877654332                                            001122223


Q ss_pred             hhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHH
Q psy16105         55 NASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYT  101 (130)
Q Consensus        55 ~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~  101 (130)
                      +...|+..+++.+..|++++|+..+......+++.+++|++...+.+
T Consensus       123 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  169 (496)
T PRK03893        123 AGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVP  169 (496)
T ss_pred             HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            55678888999999999999999999999999999999999988765

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=97.46  E-value=0.0058  Score=49.52  Aligned_cols=89  Identities=12%  Similarity=0.041  Sum_probs=67.1

Q ss_pred             hhHHHHHhhhhhccccchhHHHHHHHHHHHHH---------------------------H--------------------
Q psy16105         14 EFTVMYLYTRLAFRWNEYNYSTFYTAYYFTDF---------------------------L--------------------   46 (130)
Q Consensus        14 ~~~i~~ly~~~~f~W~~~~~g~~~~~~~~~~~---------------------------~--------------------   46 (130)
                      ..+...-..++.|++++.+.|...+...+...                           .                    
T Consensus        21 ~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~~  100 (410)
T TIGR00885        21 ITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAEIMNYTLFLVG  100 (410)
T ss_pred             hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence            34444555688999999999998876643332                           0                    


Q ss_pred             HHHHHHHHhhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHh
Q psy16105         47 GAVASLFSNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTA  102 (130)
Q Consensus        47 ~~~~~~~~~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~  102 (130)
                      ..+.+...+..+++.+..+++..|++++++..+..+...+++..++|.+...+...
T Consensus       101 ~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~  156 (410)
T TIGR00885       101 LFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILS  156 (410)
T ss_pred             HHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            01122234677788888999999999999999999999999999999999988654

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=97.44  E-value=0.00058  Score=55.82  Aligned_cols=65  Identities=6%  Similarity=0.053  Sum_probs=48.6

Q ss_pred             HhhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHhccc-cCCchHHHHHHHHH
Q psy16105         54 SNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLD-FMPSTFLLMSLVLT  119 (130)
Q Consensus        54 ~~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t~~-~~pg~~f~~~a~l~  119 (130)
                      ++...|...+++++..|++|||+..|..+...++++.+++++...+.+.... .|.+ .|.+.+.+.
T Consensus       136 ~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~-~f~~~g~~~  201 (467)
T PRK09556        136 QSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIG-MFIFPSIIA  201 (467)
T ss_pred             HhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchh-HHHHHHHHH
Confidence            4556788899999999999999999999999999999999987666554221 2444 344444443

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=97.44  E-value=0.0055  Score=47.54  Aligned_cols=83  Identities=7%  Similarity=0.028  Sum_probs=56.5

Q ss_pred             HHHhhhhhccccchhHHHHHHHHHHHHH----------------------------------HHH-----------HHHH
Q psy16105         18 MYLYTRLAFRWNEYNYSTFYTAYYFTDF----------------------------------LGA-----------VASL   52 (130)
Q Consensus        18 ~~ly~~~~f~W~~~~~g~~~~~~~~~~~----------------------------------~~~-----------~~~~   52 (130)
                      ...|.++.+++|+.+.|+..+...+...                                  ...           ..+.
T Consensus        24 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~  103 (366)
T TIGR00886        24 AVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYSVLLLLRLFIGI  103 (366)
T ss_pred             hhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            3345788999999999999877655443                                  000           1111


Q ss_pred             HHhhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHH
Q psy16105         53 FSNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYT  101 (130)
Q Consensus        53 ~~~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~  101 (130)
                      .++ ..+...+.+++..|++|||+..+......+++..+++.+...+..
T Consensus       104 ~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~  151 (366)
T TIGR00886       104 AGG-SFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIG  151 (366)
T ss_pred             hch-hhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            122 345567889999999999999999887766666666665555544

>TIGR00899 2A0120 sugar efflux transporter

Probab=97.44  E-value=0.0082  Score=46.63  Aligned_cols=71  Identities=11%  Similarity=0.028  Sum_probs=53.5

Q ss_pred             HhhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHh
Q psy16105         54 SNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSPALFIFLC  128 (130)
Q Consensus        54 ~~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t~~~~pg~~f~~~a~l~~~~~~l~~~  128 (130)
                      .+...|...+...+..| +|+|+.++.......++..++|++...+++..   -....|++.+.+.+.+.++...
T Consensus       302 ~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~---g~~~~~~~~~~~~~~~~~~~~~  372 (375)
T TIGR00899       302 IGILAGIGMLYFQDLMP-GRAGAATTLYTNTGRVGWIIAGSVGGILAERW---SYHAVYWFAIVMLIVALFCLLL  372 (375)
T ss_pred             HHHHHHHHHHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cchhHHHHHHHHHHHHHHHHhe
Confidence            35566777777777775 56789999999999999999999999887652   2345677777777776666543

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK12307 putative sialic acid transporter; Provisional

Probab=97.44  E-value=0.0038  Score=49.79  Aligned_cols=80  Identities=6%  Similarity=-0.046  Sum_probs=60.9

Q ss_pred             hhhhccccchhHHHHHHHHHHHHH--------------------------------------------HHHHHHHHHhhH
Q psy16105         22 TRLAFRWNEYNYSTFYTAYYFTDF--------------------------------------------LGAVASLFSNAS   57 (130)
Q Consensus        22 ~~~~f~W~~~~~g~~~~~~~~~~~--------------------------------------------~~~~~~~~~~~~   57 (130)
                      .++.++|++.+.++..+...+...                                            .-...+...+..
T Consensus        44 i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~  123 (426)
T PRK12307         44 IKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGE  123 (426)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhH
Confidence            356899999999988776644332                                            011222234566


Q ss_pred             HHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHH
Q psy16105         58 FIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYT  101 (130)
Q Consensus        58 ~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~  101 (130)
                      .|...+++++..|+||||+..+......+++.+++|++...+.+
T Consensus       124 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~  167 (426)
T PRK12307        124 YACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAE  167 (426)
T ss_pred             HHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcc
Confidence            78899999999999999999999999999999999988776643

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=97.43  E-value=0.0033  Score=49.59  Aligned_cols=74  Identities=12%  Similarity=0.056  Sum_probs=60.4

Q ss_pred             HHHHhhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHH
Q psy16105         51 SLFSNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSPALFIFL  127 (130)
Q Consensus        51 ~~~~~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t~~~~pg~~f~~~a~l~~~~~~l~~  127 (130)
                      +...+...|...+.+.+..|++++|+.++.......++..++|++...+.+.   .-....|.+.+++.+.+.++..
T Consensus       322 g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~---~g~~~~f~~~~~~~l~~~~~~~  395 (408)
T PRK09874        322 GAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISAN---YGFRAVFLVTAGVVLFNAVYSW  395 (408)
T ss_pred             HhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhh---cchhHHHHHHHHHHHHHHHHHH
Confidence            4445677899999999999999999999999999999999999999988754   2345788888888777666554

>TIGR00788 fbt folate/biopterin transporter

Probab=97.42  E-value=0.0017  Score=53.67  Aligned_cols=60  Identities=12%  Similarity=0.170  Sum_probs=47.5

Q ss_pred             hhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHh---ccccCCchHHHH
Q psy16105         55 NASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTA---TLDFMPSTFLLM  114 (130)
Q Consensus        55 ~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~---t~~~~pg~~f~~  114 (130)
                      ++........+++.+|++++|..++..+++.+++..+++.+.+.+++.   +-|.+.....++
T Consensus       366 g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i  428 (468)
T TIGR00788       366 QLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLI  428 (468)
T ss_pred             HHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHH
Confidence            444555689999999999999999999999999999999888888765   224455554444

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=97.42  E-value=0.0046  Score=48.92  Aligned_cols=66  Identities=12%  Similarity=0.084  Sum_probs=49.3

Q ss_pred             HHhhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHhccccCCchHHHHHHHHHHH
Q psy16105         53 FSNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSP  121 (130)
Q Consensus        53 ~~~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t~~~~pg~~f~~~a~l~~~  121 (130)
                      ..+...+...+.+++..|++||++..+.......++..++|++...+...  ..|+. .|++.+.+...
T Consensus       104 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~--~g~~~-~~~~~~~~~~i  169 (392)
T PRK10473        104 GAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLK--FPWQS-LFYTMAAMGIL  169 (392)
T ss_pred             hhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--cChHH-HHHHHHHHHHH
Confidence            34566788889999999999999999999999999999999888776543  12433 44444444433

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=97.40  E-value=0.0061  Score=48.26  Aligned_cols=72  Identities=17%  Similarity=0.154  Sum_probs=56.5

Q ss_pred             HHhhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHH
Q psy16105         53 FSNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSPALFIFL  127 (130)
Q Consensus        53 ~~~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t~~~~pg~~f~~~a~l~~~~~~l~~  127 (130)
                      ..+...|...+...+.+|+|++|+..|.......++..++|++...+.+.   .-....|.+.+++.++++++..
T Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~---~g~~~~~~~~~~~~~~~~~~~~  386 (399)
T PRK05122        315 GFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASW---FGYPSIFLAAALAALLGLALTW  386 (399)
T ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cCHHHHHHHHHHHHHHHHHHHH
Confidence            34567788888889999999999999999999999999999998888764   1234567777777666655544

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=97.37  E-value=0.0063  Score=46.74  Aligned_cols=103  Identities=11%  Similarity=0.056  Sum_probs=67.8

Q ss_pred             HHHHhhhhhccccchhHHHHHHHHHHHHH-------------------------------------------HH-HHHHH
Q psy16105         17 VMYLYTRLAFRWNEYNYSTFYTAYYFTDF-------------------------------------------LG-AVASL   52 (130)
Q Consensus        17 i~~ly~~~~f~W~~~~~g~~~~~~~~~~~-------------------------------------------~~-~~~~~   52 (130)
                      ...-+.++.++|++.+.|...+...+...                                           .. ...+.
T Consensus        24 ~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  103 (377)
T TIGR00890        24 LLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTYGLASA  103 (377)
T ss_pred             hHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            34556788899999999999888765443                                           00 11122


Q ss_pred             HHhhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Q psy16105         53 FSNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSPAL  123 (130)
Q Consensus        53 ~~~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t~~~~pg~~f~~~a~l~~~~~  123 (130)
                      ..+...+.....+++..| ||||+..+......+++.++++++...+.+.  ..|+ ..|++.+.+.+...
T Consensus       104 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~-~~f~~~~~~~~~~~  170 (377)
T TIGR00890       104 GVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINL--EGVP-AAFIYMGIIFLLVI  170 (377)
T ss_pred             HHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhc--ccHH-HHHHHHHHHHHHHH
Confidence            233444556666676665 7899999999999999999888888776543  1232 35566555554443

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=97.36  E-value=0.0086  Score=47.21  Aligned_cols=66  Identities=5%  Similarity=-0.015  Sum_probs=50.9

Q ss_pred             HHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHH
Q psy16105         57 SFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSPALFI  125 (130)
Q Consensus        57 ~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t~~~~pg~~f~~~a~l~~~~~~l  125 (130)
                      ..|...+.+.+.+|+||+|+..|.......++.+++|++...+.+..   -....|++.+.+.+++.++
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~  188 (408)
T PRK09874        123 FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSY---GLRPVFFITASVLFLCFLV  188 (408)
T ss_pred             hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CHHHHHHHHHHHHHHHHHH
Confidence            46788889999999999999999999999999999999998887642   1234566666655544443

>PRK11043 putative transporter; Provisional

Probab=97.36  E-value=0.0072  Score=47.95  Aligned_cols=101  Identities=9%  Similarity=0.037  Sum_probs=69.4

Q ss_pred             hhhhccccchhHHHHHHHHHHHHH-------------------------------------------HH-HHHHHHHhhH
Q psy16105         22 TRLAFRWNEYNYSTFYTAYYFTDF-------------------------------------------LG-AVASLFSNAS   57 (130)
Q Consensus        22 ~~~~f~W~~~~~g~~~~~~~~~~~-------------------------------------------~~-~~~~~~~~~~   57 (130)
                      .++.+++++.+.|...+...+...                                           .. ...+...+..
T Consensus        32 i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~  111 (401)
T PRK11043         32 IQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFVQAVGVCSA  111 (401)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhHHH
Confidence            467899999999999877644332                                           00 1111222345


Q ss_pred             HHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHH
Q psy16105         58 FIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSPALFI  125 (130)
Q Consensus        58 ~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t~~~~pg~~f~~~a~l~~~~~~l  125 (130)
                      .+...+++++..|++|+++.++.......++..++|++...+.+..  .|. ..|++.+.+.+...++
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~--g~~-~~~~~~~~~~~~~~~~  176 (401)
T PRK11043        112 AVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHF--GWQ-AIFATLFAITLLLILP  176 (401)
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--ChH-HHHHHHHHHHHHHHHH
Confidence            6777889999999999999999999999999999999998877541  132 4455555554444433

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=97.34  E-value=0.01  Score=47.60  Aligned_cols=62  Identities=13%  Similarity=-0.006  Sum_probs=48.3

Q ss_pred             HhhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHhccccCCchHHHHHHHHH
Q psy16105         54 SNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLT  119 (130)
Q Consensus        54 ~~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t~~~~pg~~f~~~a~l~  119 (130)
                      .+...|...+.+.+.+| |++++..+......+++..++|.+...+++.   .-+..++..++++.
T Consensus       319 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~---~g~~~~~~~~~~~~  380 (394)
T PRK10213        319 FALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDN---IGLTSPLMLSGTLM  380 (394)
T ss_pred             HHhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cChhhHHHHHHHHH
Confidence            35678888889999996 7788999988889999999999999999975   22344555555444

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=97.33  E-value=0.0052  Score=49.10  Aligned_cols=81  Identities=10%  Similarity=-0.146  Sum_probs=61.3

Q ss_pred             hhhhhccccchhHHHHHHHHHHHHH--------------------------------------------HHHHHHHHHhh
Q psy16105         21 YTRLAFRWNEYNYSTFYTAYYFTDF--------------------------------------------LGAVASLFSNA   56 (130)
Q Consensus        21 y~~~~f~W~~~~~g~~~~~~~~~~~--------------------------------------------~~~~~~~~~~~   56 (130)
                      -.++.|+||..+.|...+...+...                                            .-...+...+.
T Consensus        34 ~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~l~Gig~~~  113 (393)
T PRK09705         34 QLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSSALLGGVGIGI  113 (393)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHhHHHH
Confidence            3577899999999999887644332                                            11223444566


Q ss_pred             HHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHh
Q psy16105         57 SFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTA  102 (130)
Q Consensus        57 ~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~  102 (130)
                      ..|...+++.|..| +|||++.|..+....++..+++++...+.+.
T Consensus       114 ~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~  158 (393)
T PRK09705        114 IQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQH  158 (393)
T ss_pred             HhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            77888888888875 8999999999998888999988888776554

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=97.32  E-value=0.0082  Score=47.77  Aligned_cols=67  Identities=12%  Similarity=0.030  Sum_probs=50.1

Q ss_pred             hhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHhccccCCchHHHHHHHHHHHHHH
Q psy16105         55 NASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSPALF  124 (130)
Q Consensus        55 ~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t~~~~pg~~f~~~a~l~~~~~~  124 (130)
                      +...|...+.+++..|++|+++..+.......++..++|++...+.+.  ..|. ..|++.+++..++.+
T Consensus       116 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~--~~w~-~~~~~~~~~~~~~~~  182 (406)
T PRK15402        116 CFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHV--LPWR-GMFVLFAALAALSFF  182 (406)
T ss_pred             hhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--cCcc-HHHHHHHHHHHHHHH
Confidence            455688889999999999999999999888888999999998877664  1243 355555555544444

>TIGR00883 2A0106 metabolite-proton symporter

Probab=97.32  E-value=0.0024  Score=49.37  Aligned_cols=50  Identities=20%  Similarity=-0.036  Sum_probs=41.4

Q ss_pred             HhhHHHHHHHHHhcCCCccchHHHHHHH-HHHHHHhHhhHHHHHHHHHHhc
Q psy16105         54 SNASFIAMRAIISKLTSAEELGKVMSAF-MLFEAIAPMIYNPIYNAVYTAT  103 (130)
Q Consensus        54 ~~~~~p~~rs~iSk~v~~~eqG~~~~~~-~~~~sl~~~i~~~l~~~iy~~t  103 (130)
                      .+...|..++.+++.+|+++||+.++.. +....++..++|++...+++..
T Consensus       326 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~  376 (394)
T TIGR00883       326 GGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMT  376 (394)
T ss_pred             HHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHc
Confidence            3466788899999999999999999985 4556688889999999998763

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=97.32  E-value=0.0084  Score=49.54  Aligned_cols=71  Identities=7%  Similarity=-0.003  Sum_probs=51.1

Q ss_pred             HHHHhhHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHhccccCCchHHHHHHHHHHHHHH
Q psy16105         51 SLFSNASFIAMRAIISKL-TSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSPALF  124 (130)
Q Consensus        51 ~~~~~~~~p~~rs~iSk~-v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t~~~~pg~~f~~~a~l~~~~~~  124 (130)
                      +...+...|...+.+.+. .|++|||+.+|.......++..++|++...+.+..  .|. ..|++...+.+++++
T Consensus       105 G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~--gwr-~~f~i~~~~~~~~~~  176 (495)
T PRK14995        105 AIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHF--YWG-SVFLINVPIVLVVMG  176 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC--ChH-HHHHHHHHHHHHHHH
Confidence            444566778777777665 57899999999999999999999999999887641  233 345555544444433

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=97.32  E-value=0.0074  Score=54.12  Aligned_cols=87  Identities=13%  Similarity=0.129  Sum_probs=65.2

Q ss_pred             hHHHHHhhhhhccccch-hHHHHHHHHHHHHH--------------------------------------------HHHH
Q psy16105         15 FTVMYLYTRLAFRWNEY-NYSTFYTAYYFTDF--------------------------------------------LGAV   49 (130)
Q Consensus        15 ~~i~~ly~~~~f~W~~~-~~g~~~~~~~~~~~--------------------------------------------~~~~   49 (130)
                      ...+..|.++.+++++. +.|++.+..++..+                                            ....
T Consensus       252 ~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (1146)
T PRK08633        252 QANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFL  331 (1146)
T ss_pred             HHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            44556677888999999 88888776654433                                            1122


Q ss_pred             HHHHHhhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHH
Q psy16105         50 ASLFSNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYT  101 (130)
Q Consensus        50 ~~~~~~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~  101 (130)
                      .+.+.++..+..++++.+.+|++++|+.+|+.+.+..++.++++.+...+..
T Consensus       332 ~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~  383 (1146)
T PRK08633        332 FGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSG  383 (1146)
T ss_pred             HHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2333466778889999999999999999999999999999887777665543

>PRK11010 ampG muropeptide transporter; Validated

Probab=97.31  E-value=0.013  Score=48.63  Aligned_cols=72  Identities=18%  Similarity=0.247  Sum_probs=58.5

Q ss_pred             HhhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHh
Q psy16105         54 SNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSPALFIFLC  128 (130)
Q Consensus        54 ~~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t~~~~pg~~f~~~a~l~~~~~~l~~~  128 (130)
                      .++..++..+...+.++++..|+.+|..++..++++.+++++...+++..  .| ...|.+.+.+.++++++..+
T Consensus       330 ~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~--G~-~~~f~~~~~~~l~~l~~~~~  401 (491)
T PRK11010        330 GGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAH--GW-PTFYLFSVAAAVPGLLLLLV  401 (491)
T ss_pred             HHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--Ch-HHHHHHHHHHHHHHHHHHHH
Confidence            35667778889999999999999999999999999999999999998853  13 34677788888877766654

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=97.27  E-value=0.011  Score=47.32  Aligned_cols=102  Identities=9%  Similarity=0.039  Sum_probs=68.6

Q ss_pred             hHHHHHhhhhhccccchhHHHHHHHHHHHHH-------------------------------------------HHHHHH
Q psy16105         15 FTVMYLYTRLAFRWNEYNYSTFYTAYYFTDF-------------------------------------------LGAVAS   51 (130)
Q Consensus        15 ~~i~~ly~~~~f~W~~~~~g~~~~~~~~~~~-------------------------------------------~~~~~~   51 (130)
                      ......|.++.++.++.++|+..+..++..+                                           ...+.+
T Consensus       225 ~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G  304 (393)
T PRK11195        225 RFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGILMGLVVLLMALQHSLLPAYPLLILIG  304 (393)
T ss_pred             HHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            3344467788899999999999876554332                                           011223


Q ss_pred             HHHhhHHHHHHHHHhcCCCccc-hHHHHHHHHHHHHHhHhhHHHHHHHHHHhccccCCchHHHHHHHH
Q psy16105         52 LFSNASFIAMRAIISKLTSAEE-LGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVL  118 (130)
Q Consensus        52 ~~~~~~~p~~rs~iSk~v~~~e-qG~~~~~~~~~~sl~~~i~~~l~~~iy~~t~~~~pg~~f~~~a~l  118 (130)
                      ...+...+..++.+.+..|+|. +|+..++.+..+.++..++..++..+....++  |-..|...+.+
T Consensus       305 ~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  370 (393)
T PRK11195        305 ALGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLVKLGVP--VVAVIVGFGLL  370 (393)
T ss_pred             HhhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHHHcCCC--HHHHHHHHHHH
Confidence            3345667778888887655543 69999999999999999999888877555333  33444444444

>PRK12382 putative transporter; Provisional

Probab=97.24  E-value=0.0043  Score=49.06  Aligned_cols=71  Identities=15%  Similarity=0.255  Sum_probs=56.8

Q ss_pred             HhhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHH
Q psy16105         54 SNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSPALFIFL  127 (130)
Q Consensus        54 ~~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t~~~~pg~~f~~~a~l~~~~~~l~~  127 (130)
                      .+...|...+...+..|+|++|+.+|..+....++..++|++...+.+.   .-....|.+.+++.+++.++..
T Consensus       316 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~---~g~~~~~~~~~~~~~~~~~~~~  386 (392)
T PRK12382        316 CSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATS---FGYPSVFLAGAISAVLGIIVTI  386 (392)
T ss_pred             HHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCchHHHHHHHHHHHHHHHHHH
Confidence            4566788889999999999999999999999999999999999988875   2234566677666666655544

>PRK15011 sugar efflux transporter B; Provisional

Probab=97.22  E-value=0.018  Score=45.83  Aligned_cols=64  Identities=13%  Similarity=0.110  Sum_probs=44.1

Q ss_pred             HHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHH
Q psy16105         59 IAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSPALFIF  126 (130)
Q Consensus        59 p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t~~~~pg~~f~~~a~l~~~~~~l~  126 (130)
                      +......++..| +++|+..+..+....++..++|.+...+++..  .+ ..+|++.+.+.+.++++.
T Consensus       324 ~~~~~~~~~~~p-~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~--g~-~~~~~~~~~~~~~~~~~~  387 (393)
T PRK15011        324 GIGMLYFQDLMP-GQAGSATTLYTNTSRVGWIIAGSLAGIVAEIW--NY-HAVFWFALVMIIATLFCL  387 (393)
T ss_pred             HHHHHHHHHhCC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHh--hh-HHHHHHHHHHHHHHHHHH
Confidence            334444556665 67999999999999999999999999998751  13 345555555555544443

>TIGR00806 rfc RFC reduced folate carrier

Probab=97.22  E-value=0.0097  Score=50.22  Aligned_cols=115  Identities=11%  Similarity=0.091  Sum_probs=76.0

Q ss_pred             ccchhHHHHHhhhhhccccchh-HHHHHHHHHH----HHH----------------------------------------
Q psy16105         11 YQGEFTVMYLYTRLAFRWNEYN-YSTFYTAYYF----TDF----------------------------------------   45 (130)
Q Consensus        11 ~~g~~~i~~ly~~~~f~W~~~~-~g~~~~~~~~----~~~----------------------------------------   45 (130)
                      +....++..-|.++.+||+++| +|...+....    ..+                                        
T Consensus        41 ~R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i  120 (511)
T TIGR00806        41 FRPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQL  120 (511)
T ss_pred             hhchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444566677888899999999 7776654321    111                                        


Q ss_pred             HHHHHHHHHhhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHH
Q psy16105         46 LGAVASLFSNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSPALFI  125 (130)
Q Consensus        46 ~~~~~~~~~~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t~~~~pg~~f~~~a~l~~~~~~l  125 (130)
                      +=...+..++... +..+.+++.+|++|+|++.|...+...++.++++++...+-+..-..+..+ +.++-+...+++++
T Consensus       121 ~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~s~gWr~y~~L-n~Isl~s~~~a~~~  198 (511)
T TIGR00806       121 MEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLVTLGWISYSTL-NIISLVFMTFSVFL  198 (511)
T ss_pred             HHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHH-HHHHHHHHHHHHHH
Confidence            0022344455556 899999999999999999999999999999999999998433211112222 23344444555544


Q ss_pred             HH
Q psy16105        126 FL  127 (130)
Q Consensus       126 ~~  127 (130)
                      ..
T Consensus       199 a~  200 (511)
T TIGR00806       199 AL  200 (511)
T ss_pred             HH
Confidence            43

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PRK09528 lacY galactoside permease; Reviewed

Probab=97.22  E-value=0.00085  Score=53.82  Aligned_cols=109  Identities=8%  Similarity=0.074  Sum_probs=69.9

Q ss_pred             cchhHHHHHhhhhhccccchhHHHHHHHHHHHHH--------------------H-----HHHHH--HH-----------
Q psy16105         12 QGEFTVMYLYTRLAFRWNEYNYSTFYTAYYFTDF--------------------L-----GAVAS--LF-----------   53 (130)
Q Consensus        12 ~g~~~i~~ly~~~~f~W~~~~~g~~~~~~~~~~~--------------------~-----~~~~~--~~-----------   53 (130)
                      ......+..|.++++||++.+.|...+...+...                    .     +....  ..           
T Consensus        27 ~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (420)
T PRK09528         27 SSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQYNI  106 (420)
T ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456778888899999999999999988776555                    0     00000  00           


Q ss_pred             ------Hhh--------HHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHhccccCCchHHHHHHHHH
Q psy16105         54 ------SNA--------SFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLT  119 (130)
Q Consensus        54 ------~~~--------~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t~~~~pg~~f~~~a~l~  119 (130)
                            .++        ..|......++.  ++|+|+.+|......+++..++|++.+.+++.    .+..+|++.+.+.
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~----~~~~~f~~~~~~~  180 (420)
T PRK09528        107 LLGAIVGGIYLGFGFLAGAGAIEAYIERV--SRRSGFEYGRARMWGSLGWALCAFIAGILFNI----NPQINFWLGSGSA  180 (420)
T ss_pred             HHHHHHHHHHhhhhhccchhhhhhHHHHH--HhhccccchhhHHhhhHHHHHHHHHHHHHHhc----CchHhHHHHHHHH
Confidence                  000        011122222111  35678888999999999999999999988763    2456788777766


Q ss_pred             HHHHHHH
Q psy16105        120 SPALFIF  126 (130)
Q Consensus       120 ~~~~~l~  126 (130)
                      +.++++.
T Consensus       181 ~~~~~~~  187 (420)
T PRK09528        181 LILLVLL  187 (420)
T ss_pred             HHHHHHH
Confidence            5555443

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=97.21  E-value=0.0045  Score=48.97  Aligned_cols=66  Identities=12%  Similarity=0.021  Sum_probs=52.3

Q ss_pred             HHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHH
Q psy16105         58 FIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSPALFIF  126 (130)
Q Consensus        58 ~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t~~~~pg~~f~~~a~l~~~~~~l~  126 (130)
                      .|.....+++..|+++||+..+.......++++++|.+.+.+++.   ...+.+|++.+++.+.+.++.
T Consensus       401 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~---~~~~~~f~~~~~~~~~~~i~~  466 (481)
T TIGR00879       401 GPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLES---IGVGGVFIFFGGLNVLGLIFV  466 (481)
T ss_pred             cCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCccceehhHHHHHHHHHHHH
Confidence            355667778999999999999999999999999999999998876   234556777776665555444

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=97.20  E-value=0.0077  Score=47.93  Aligned_cols=47  Identities=11%  Similarity=0.090  Sum_probs=37.4

Q ss_pred             HHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHhcc
Q psy16105         57 SFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATL  104 (130)
Q Consensus        57 ~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t~  104 (130)
                      ..|...+. +..++++|+|++.++.+..+.++..+++.+.+.+|..+-
T Consensus       326 ~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~  372 (406)
T PRK15402        326 ANAGLYRL-TLFSSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGG  372 (406)
T ss_pred             HhhhHHHH-HhhhccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCc
Confidence            34444443 345667999999999999999999999999999987743

>PRK03699 putative transporter; Provisional

Probab=97.20  E-value=0.018  Score=45.81  Aligned_cols=106  Identities=12%  Similarity=0.108  Sum_probs=70.0

Q ss_pred             hHHHHHhhhhhccccchhHHHHHHHHHHHHH--------------------------------------------HHHHH
Q psy16105         15 FTVMYLYTRLAFRWNEYNYSTFYTAYYFTDF--------------------------------------------LGAVA   50 (130)
Q Consensus        15 ~~i~~ly~~~~f~W~~~~~g~~~~~~~~~~~--------------------------------------------~~~~~   50 (130)
                      ......|.++++++|+++.|...+...+...                                            .....
T Consensus       225 ~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (394)
T PRK03699        225 ISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLLYAILGL  304 (394)
T ss_pred             HHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence            3445678888999999999988765433322                                            11112


Q ss_pred             HHHHhhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHhccccCCchHHHHHHHHHHHHHH
Q psy16105         51 SLFSNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSPALF  124 (130)
Q Consensus        51 ~~~~~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t~~~~pg~~f~~~a~l~~~~~~  124 (130)
                      +...+...|...+...+..| ++.++..|.......++..++|++...+++..   -....|++.+++.+++.+
T Consensus       305 G~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~---g~~~~~~~~~~~~~~~~~  374 (394)
T PRK03699        305 GFFSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAHF---GLQAALLTANGLYAVVFV  374 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHh---CchhhhhhhHHHHHHHHH
Confidence            22234455667777777665 45678888888888999999999999998862   123455555555555443

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=97.18  E-value=0.017  Score=46.19  Aligned_cols=112  Identities=8%  Similarity=-0.037  Sum_probs=73.6

Q ss_pred             chhHHHHHhhhhhccccchhHHHHHHHHHHHHH---------------------------HH----------------HH
Q psy16105         13 GEFTVMYLYTRLAFRWNEYNYSTFYTAYYFTDF---------------------------LG----------------AV   49 (130)
Q Consensus        13 g~~~i~~ly~~~~f~W~~~~~g~~~~~~~~~~~---------------------------~~----------------~~   49 (130)
                      +.......|.++ +++++.+.|...+..++..+                           .+                .+
T Consensus       223 ~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l  301 (393)
T PRK09705        223 SLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVLWAMV  301 (393)
T ss_pred             HHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHHHHHH
Confidence            334445566665 79999999988877665444                           00                01


Q ss_pred             HHHHHhhHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHhHhhHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHH
Q psy16105         50 ASLFSNASFIAMRAIISKLT-SAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSPALFIFL  127 (130)
Q Consensus        50 ~~~~~~~~~p~~rs~iSk~v-~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t~~~~pg~~f~~~a~l~~~~~~l~~  127 (130)
                      .+...+...|.......+.. |++++|+.+|....+..++..++|++...+.+.+=+  -+..|.+.++.....+++..
T Consensus       302 ~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~--~~~~~~~~~~~~~~~~~~~~  378 (393)
T PRK09705        302 CGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGN--YLMDWAFHALCVVGLMIITL  378 (393)
T ss_pred             HHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHH
Confidence            11112334465555555555 467889999999999999999999999999887422  35666666666655554443

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=97.17  E-value=0.016  Score=45.78  Aligned_cols=97  Identities=16%  Similarity=0.087  Sum_probs=67.6

Q ss_pred             hhhhhccccchhHHHHHHHHHHHHH--------------------------------------------HHHHHHHHHhh
Q psy16105         21 YTRLAFRWNEYNYSTFYTAYYFTDF--------------------------------------------LGAVASLFSNA   56 (130)
Q Consensus        21 y~~~~f~W~~~~~g~~~~~~~~~~~--------------------------------------------~~~~~~~~~~~   56 (130)
                      +..+.+++|+.+.|...+...+...                                            .....+...+.
T Consensus        33 ~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~  112 (394)
T PRK11652         33 DMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAASAIQGLGTGV  112 (394)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhhhH
Confidence            3467899999999998877654433                                            00112222345


Q ss_pred             HHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHhccccCCchHHHHHHHHHH
Q psy16105         57 SFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTS  120 (130)
Q Consensus        57 ~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t~~~~pg~~f~~~a~l~~  120 (130)
                      ..|..+.+..+..+++|+++..+.......++..++|++...+.+..  .|. ..|++.+.+.+
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~--g~~-~~f~~~~~~~~  173 (394)
T PRK11652        113 GGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLF--GWR-ACYLFLLLLGA  173 (394)
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--ChH-HHHHHHHHHHH
Confidence            56778888888899999999999999999999999999998876531  233 44555444443

>TIGR00897 2A0118 polyol permease family

Probab=97.17  E-value=0.0056  Score=48.93  Aligned_cols=46  Identities=11%  Similarity=-0.008  Sum_probs=36.9

Q ss_pred             HHHHHHHHHhcCCCccchHHHHHHHHHHHHHhH-hhHHHHHHHHHHh
Q psy16105         57 SFIAMRAIISKLTSAEELGKVMSAFMLFEAIAP-MIYNPIYNAVYTA  102 (130)
Q Consensus        57 ~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~-~i~~~l~~~iy~~  102 (130)
                      ..|...+.+.+.+|+||||+..|..+...+++. +++|++...+++.
T Consensus       122 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~  168 (402)
T TIGR00897       122 FAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPA  168 (402)
T ss_pred             HHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            455566777888999999999999999999986 5788877766543

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=97.12  E-value=0.0072  Score=50.36  Aligned_cols=112  Identities=10%  Similarity=0.103  Sum_probs=75.0

Q ss_pred             ccchhHHHHHhhhhhccccchhHHHHHHHHHHHHH---------------------------------------------
Q psy16105         11 YQGEFTVMYLYTRLAFRWNEYNYSTFYTAYYFTDF---------------------------------------------   45 (130)
Q Consensus        11 ~~g~~~i~~ly~~~~f~W~~~~~g~~~~~~~~~~~---------------------------------------------   45 (130)
                      +.+.+..+..|.++.+|+++++.+...+.......                                             
T Consensus        30 ~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~  109 (489)
T PRK10207         30 YYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIF  109 (489)
T ss_pred             HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHH
Confidence            34567788899999999999998766544331111                                             


Q ss_pred             HH-HHHHHHHhhHHHHHHHHHhcCCCccc--hHHHHHHHHHHHHHhHhhHHHHHHHHHHhccccCCchHHHHHHHHHHHH
Q psy16105         46 LG-AVASLFSNASFIAMRAIISKLTSAEE--LGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSPA  122 (130)
Q Consensus        46 ~~-~~~~~~~~~~~p~~rs~iSk~v~~~e--qG~~~~~~~~~~sl~~~i~~~l~~~iy~~t~~~~pg~~f~~~a~l~~~~  122 (130)
                      .+ ...+...+...|...+++++..|+||  +++.++......+++..++|.+...+-+. .+ |+ ..|++.+......
T Consensus       110 ~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~-~g-w~-~~F~i~~i~~~~~  186 (489)
T PRK10207        110 IALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADK-FG-YS-VTYNLCGAGLIIA  186 (489)
T ss_pred             HHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHh-hC-hH-HHHHHHHHHHHHH
Confidence            00 11223346678888999999998874  58899999999999999999988877443 23 32 3455554433333


Q ss_pred             HHH
Q psy16105        123 LFI  125 (130)
Q Consensus       123 ~~l  125 (130)
                      ++.
T Consensus       187 ~~~  189 (489)
T PRK10207        187 LLV  189 (489)
T ss_pred             HHH
Confidence            333

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=97.11  E-value=0.016  Score=46.94  Aligned_cols=67  Identities=10%  Similarity=-0.065  Sum_probs=48.7

Q ss_pred             hhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Q psy16105         55 NASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSPAL  123 (130)
Q Consensus        55 ~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t~~~~pg~~f~~~a~l~~~~~  123 (130)
                      +...|...+.+++..|++|||+..|..+...+++..++|++......... .|. ..|++.+.+.+++.
T Consensus       133 g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~-~w~-~~f~~~~~~~~i~~  199 (438)
T TIGR00712       133 GMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFN-DWH-AALYFPAICAIIVA  199 (438)
T ss_pred             hcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhh-hhH-HHHHHHHHHHHHHH
Confidence            34457777888999999999999999999999999999988765443321 243 35666555554433

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=97.00  E-value=0.013  Score=47.30  Aligned_cols=88  Identities=9%  Similarity=0.114  Sum_probs=64.2

Q ss_pred             hHHHHHhhhhhccccchhHHHHHHHHHHHHH---------------------------H---------------------
Q psy16105         15 FTVMYLYTRLAFRWNEYNYSTFYTAYYFTDF---------------------------L---------------------   46 (130)
Q Consensus        15 ~~i~~ly~~~~f~W~~~~~g~~~~~~~~~~~---------------------------~---------------------   46 (130)
                      ......|.++.+++++.+.|+......+..+                           .                     
T Consensus       275 ~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (485)
T TIGR00711       275 FYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPFLAIALP  354 (485)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHH
Confidence            4455667888899999999988876544332                           0                     


Q ss_pred             HHHHHHHHhhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHh
Q psy16105         47 GAVASLFSNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTA  102 (130)
Q Consensus        47 ~~~~~~~~~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~  102 (130)
                      ..+.+...+...+.......+.+|++++|+..|.......++..+++.+.+.+++.
T Consensus       355 ~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~  410 (485)
T TIGR00711       355 QFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILTN  410 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            00111223344556666677778999999999999999999999999999888763

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK10504 putative transporter; Provisional

Probab=96.94  E-value=0.039  Score=44.74  Aligned_cols=50  Identities=12%  Similarity=0.039  Sum_probs=43.7

Q ss_pred             HHhhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHh
Q psy16105         53 FSNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTA  102 (130)
Q Consensus        53 ~~~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~  102 (130)
                      ..++..|...++..+.+|++++|..+|..+..+.++..+++.+.+.+++.
T Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~  415 (471)
T PRK10504        366 VNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGL  415 (471)
T ss_pred             HHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556788889999999999999999999999999999999998888665

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=96.92  E-value=0.044  Score=44.62  Aligned_cols=63  Identities=10%  Similarity=-0.024  Sum_probs=45.1

Q ss_pred             HHHHhcCCCccchHHHHHHHHHHHHHhHh-hHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHH
Q psy16105         62 RAIISKLTSAEELGKVMSAFMLFEAIAPM-IYNPIYNAVYTATLDFMPSTFLLMSLVLTSPALFIFL  127 (130)
Q Consensus        62 rs~iSk~v~~~eqG~~~~~~~~~~sl~~~-i~~~l~~~iy~~t~~~~pg~~f~~~a~l~~~~~~l~~  127 (130)
                      .....+.+|++++|+..|..+....++.. .+|.+...+++..   --...|++.+++.+++++...
T Consensus       369 ~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~---g~~~~f~~~~~~~~~~~~~~~  432 (452)
T PRK11273        369 GLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF---GWDGGFMVMIGGSILAVILLI  432 (452)
T ss_pred             HHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHh---cchHHHHHHHHHHHHHHHHHH
Confidence            34567889999999999999988888765 4788898888763   134456566665555555444

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=96.90  E-value=0.015  Score=48.41  Aligned_cols=110  Identities=12%  Similarity=0.092  Sum_probs=72.2

Q ss_pred             cchhHHHHHhhhhhccccchhHHHHHHHHHHHH-----H----------------------------------------H
Q psy16105         12 QGEFTVMYLYTRLAFRWNEYNYSTFYTAYYFTD-----F----------------------------------------L   46 (130)
Q Consensus        12 ~g~~~i~~ly~~~~f~W~~~~~g~~~~~~~~~~-----~----------------------------------------~   46 (130)
                      .+.......|..+.+||++.+.+...+......     .                                        .
T Consensus        38 y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~  117 (500)
T PRK09584         38 YGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYM  117 (500)
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence            455667778888899999888765543322111     0                                        0


Q ss_pred             H-HHHHHHHhhHHHHHHHHHhcCCCccc--hHHHHHHHHHHHHHhHhhHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Q psy16105         47 G-AVASLFSNASFIAMRAIISKLTSAEE--LGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSPAL  123 (130)
Q Consensus        47 ~-~~~~~~~~~~~p~~rs~iSk~v~~~e--qG~~~~~~~~~~sl~~~i~~~l~~~iy~~t~~~~pg~~f~~~a~l~~~~~  123 (130)
                      + ...+...++..|...+++++..|++|  +++.++......+++..++|++...+.+.   .--...|.+.++...+++
T Consensus       118 ~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~---~g~~~~F~i~~i~~~i~~  194 (500)
T PRK09584        118 GMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAK---YGWSVAFALSVVGMLITV  194 (500)
T ss_pred             HHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHh---hCHHHHHHHHHHHHHHHH
Confidence            0 11223345667888899999987654  45688888899999999999999988764   112455666665544444


Q ss_pred             H
Q psy16105        124 F  124 (130)
Q Consensus       124 ~  124 (130)
                      +
T Consensus       195 i  195 (500)
T PRK09584        195 V  195 (500)
T ss_pred             H
Confidence            3

>KOG4686|consensus

Probab=96.90  E-value=0.0047  Score=49.61  Aligned_cols=111  Identities=10%  Similarity=0.115  Sum_probs=76.5

Q ss_pred             HHHHhhhhhccccchhHHHHHHHHHHHHH------------------------------------------HH-HHHHHH
Q psy16105         17 VMYLYTRLAFRWNEYNYSTFYTAYYFTDF------------------------------------------LG-AVASLF   53 (130)
Q Consensus        17 i~~ly~~~~f~W~~~~~g~~~~~~~~~~~------------------------------------------~~-~~~~~~   53 (130)
                      +...+..+|||.++.+.|-..+....+..                                          .+ +.++.-
T Consensus       286 lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft~lsPy~~m~~lGLs  365 (459)
T KOG4686|consen  286 LGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFTFLSPYTSMTFLGLS  365 (459)
T ss_pred             hhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhhhccHHHHHHHHhhh
Confidence            33455688999999999888877654443                                          11 111111


Q ss_pred             HhhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHhcccc-CCchHHHHHHHHHHHHHHHHH
Q psy16105         54 SNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDF-MPSTFLLMSLVLTSPALFIFL  127 (130)
Q Consensus        54 ~~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t~~~-~pg~~f~~~a~l~~~~~~l~~  127 (130)
                      ..+...++.-.+...||+++.|..+|.++++++++--+.|.+...+-+..-++ +-.+.|+....+.+....++.
T Consensus       366 ysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil~  440 (459)
T KOG4686|consen  366 YSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGILF  440 (459)
T ss_pred             HHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHHh
Confidence            23344456678888999999999999999999999999999888776553322 556667666666665555544

>TIGR00901 2A0125 AmpG-related permease

Probab=96.90  E-value=0.0059  Score=47.58  Aligned_cols=33  Identities=21%  Similarity=0.209  Sum_probs=29.6

Q ss_pred             HhhHHHHHHHHHhcCCCccchHHHHHHHHHHHH
Q psy16105         54 SNASFIAMRAIISKLTSAEELGKVMSAFMLFEA   86 (130)
Q Consensus        54 ~~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~s   86 (130)
                      .+...|+.++++++.+|+|+||+.+|..+++.+
T Consensus       323 ~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       323 GGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA  355 (356)
T ss_pred             hHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence            367899999999999999999999999988765

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=96.88  E-value=0.012  Score=46.64  Aligned_cols=65  Identities=14%  Similarity=0.116  Sum_probs=45.1

Q ss_pred             HhhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Q psy16105         54 SNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSPAL  123 (130)
Q Consensus        54 ~~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t~~~~pg~~f~~~a~l~~~~~  123 (130)
                      .+...|..++++...  ++|+++.++......+++..++|++...+++.   +-...+|++.+...+..+
T Consensus       108 ~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~---~g~~~~f~~~~~~~~~~~  172 (382)
T PRK11128        108 FSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSW---FGEQAILWILTAGVASML  172 (382)
T ss_pred             HcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHH---cChhHHHHHHHHHHHHHH
Confidence            345566667766654  45678888888888899999999999999876   222345666555444333

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=96.86  E-value=0.039  Score=44.57  Aligned_cols=69  Identities=12%  Similarity=-0.059  Sum_probs=51.7

Q ss_pred             HhhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHH
Q psy16105         54 SNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSPALFI  125 (130)
Q Consensus        54 ~~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t~~~~pg~~f~~~a~l~~~~~~l  125 (130)
                      .+...+..++.+....|++|+++..+.......+++.++|++...+.+.   .-....|++.+++.+++.++
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~---~gw~~~f~~~~~~~~i~~~~  186 (413)
T PRK15403        118 ICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHF---VHWKVLFAIIAVMGLIAFVG  186 (413)
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHH
Confidence            3445666678888889999999999999999999999999988877643   11234677766666555544

>TIGR00896 CynX cyanate transporter

Probab=96.86  E-value=0.021  Score=44.50  Aligned_cols=88  Identities=6%  Similarity=-0.078  Sum_probs=61.6

Q ss_pred             HHHHHhhhhhccccchhHHHHHHHHHHHHH--------------------------------------------HHHHHH
Q psy16105         16 TVMYLYTRLAFRWNEYNYSTFYTAYYFTDF--------------------------------------------LGAVAS   51 (130)
Q Consensus        16 ~i~~ly~~~~f~W~~~~~g~~~~~~~~~~~--------------------------------------------~~~~~~   51 (130)
                      .....|.++ .++|+++.|...+..++..+                                            ...+.+
T Consensus       218 ~~lp~~~~~-~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g  296 (355)
T TIGR00896       218 GWLPAILIS-HGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWAWALVLG  296 (355)
T ss_pred             HHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence            344566665 69999999988877655444                                            001122


Q ss_pred             HHHhhHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHhcc
Q psy16105         52 LFSNASFIAMRAIISKL-TSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATL  104 (130)
Q Consensus        52 ~~~~~~~p~~rs~iSk~-v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t~  104 (130)
                      ...+...|...+.+... .+++++|...+..++...++..++|++...+++.+-
T Consensus       297 ~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g  350 (355)
T TIGR00896       297 LGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISG  350 (355)
T ss_pred             HhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            22345567777766644 456778999999999999999999999999987753

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=96.86  E-value=0.07  Score=42.57  Aligned_cols=68  Identities=16%  Similarity=0.233  Sum_probs=45.3

Q ss_pred             hHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHH
Q psy16105         56 ASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSPALFIF  126 (130)
Q Consensus        56 ~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t~~~~pg~~f~~~a~l~~~~~~l~  126 (130)
                      +......+...+.+.++..++.++..++.++++.++++++...+++.   .-....|.+++.+.++++++.
T Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~G~l~~~---~G~~~~f~~~~~~~~~~~~~~  386 (402)
T PRK11902        319 MGTAAFVALLMALCNRSFSATQYALLSALASVGRVYVGPTSGYLVEA---YGWPGFYLMTVVIALPGLALL  386 (402)
T ss_pred             HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hChHHHHHHHHHHHHHHHHHH
Confidence            33444455555555555555566777777888888888888888876   344566777777776665543

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=96.85  E-value=0.05  Score=44.46  Aligned_cols=65  Identities=6%  Similarity=-0.039  Sum_probs=46.5

Q ss_pred             HHHhcCCCccchHHHHHHHHHHHHH-hHhhHHHHHHHHHHhc----------cccCCchHHHHHHHHHHHHHHHHHh
Q psy16105         63 AIISKLTSAEELGKVMSAFMLFEAI-APMIYNPIYNAVYTAT----------LDFMPSTFLLMSLVLTSPALFIFLC  128 (130)
Q Consensus        63 s~iSk~v~~~eqG~~~~~~~~~~sl-~~~i~~~l~~~iy~~t----------~~~~pg~~f~~~a~l~~~~~~l~~~  128 (130)
                      ....+.+|++++|...|+......+ +..++|++...+.+.+          ...|. ..|.+.++..+++.++..+
T Consensus       372 ~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~-~~f~~~~~~~~~~~~~~~~  447 (467)
T PRK09556        372 VAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWA-GTFAALDIAAIGCICLMAI  447 (467)
T ss_pred             HHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChH-HHHHHHHHHHHHHHHHHHH
Confidence            4566889999999999999999997 7799999999999821          12233 3445555555555555443

>PRK11663 regulatory protein UhpC; Provisional

Probab=96.81  E-value=0.041  Score=44.56  Aligned_cols=57  Identities=11%  Similarity=0.090  Sum_probs=42.9

Q ss_pred             HHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHhccccCCchHHHHHHHHHHH
Q psy16105         62 RAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSP  121 (130)
Q Consensus        62 rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t~~~~pg~~f~~~a~l~~~  121 (130)
                      ....++..|++++|+..|..+....++..++|+++..+.+..  .+++ .|.+.+++.++
T Consensus       359 ~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~--g~~~-~f~~~~~~~~~  415 (434)
T PRK11663        359 GMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIW--HWTG-FFVVISIAAGI  415 (434)
T ss_pred             HHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhc--ccHH-HHHHHHHHHHH
Confidence            344567778999999999999999999999999999998752  2444 44555444433

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=96.78  E-value=0.023  Score=47.81  Aligned_cols=113  Identities=12%  Similarity=0.127  Sum_probs=76.6

Q ss_pred             ccchhHHHHHhhhhhccccchhHHHHHHHHHHHHH---------------------------------HH----------
Q psy16105         11 YQGEFTVMYLYTRLAFRWNEYNYSTFYTAYYFTDF---------------------------------LG----------   47 (130)
Q Consensus        11 ~~g~~~i~~ly~~~~f~W~~~~~g~~~~~~~~~~~---------------------------------~~----------   47 (130)
                      +.+....+.+|.++.+++++.+.+...+.......                                 ++          
T Consensus        25 ~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~  104 (493)
T PRK15462         25 FYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLY  104 (493)
T ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHH
Confidence            34567788889888999999998877665543321                                 00          


Q ss_pred             --H-HHHHHHhhHHHHHHHHHhcCCCcc--chHHHHHHHHHHHHHhHhhHHHHHHHHHHhccccCCchHHHHHHHHHHHH
Q psy16105         48 --A-VASLFSNASFIAMRAIISKLTSAE--ELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSPA  122 (130)
Q Consensus        48 --~-~~~~~~~~~~p~~rs~iSk~v~~~--eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t~~~~pg~~f~~~a~l~~~~  122 (130)
                        . .+....+...|...+++++..|++  +|++.++......+++..++|.+...+-+..  .| ...|.+++...+.+
T Consensus       105 l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~--Gw-~~~F~iaaigm~l~  181 (493)
T PRK15462        105 LSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEY--SW-AMGFGLAAVGMIAG  181 (493)
T ss_pred             HHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhh--Ch-HHHHHHHHHHHHHH
Confidence              0 011122455687889999999875  6999999999999999999999999885431  12 33456555544544


Q ss_pred             HHHH
Q psy16105        123 LFIF  126 (130)
Q Consensus       123 ~~l~  126 (130)
                      ++.+
T Consensus       182 li~~  185 (493)
T PRK15462        182 LVIF  185 (493)
T ss_pred             HHHH
Confidence            4443

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=96.78  E-value=0.042  Score=44.68  Aligned_cols=67  Identities=9%  Similarity=-0.007  Sum_probs=43.2

Q ss_pred             HhhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHhccccCCchHHHHHHHHHHHH
Q psy16105         54 SNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSPA  122 (130)
Q Consensus        54 ~~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t~~~~pg~~f~~~a~l~~~~  122 (130)
                      .+...|.....+++..|++|||+..|.......++..+.+++........ ..|. ..|++.+.+.++.
T Consensus       134 ~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~-~gw~-~~f~i~~~~~~~~  200 (452)
T PRK11273        134 QGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWF-NDWH-AALYMPAFAAILV  200 (452)
T ss_pred             HhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh-ccHH-HHHHHHHHHHHHH
Confidence            34455777788889999999999999998888888755555433222111 1232 4566665555443

>TIGR00896 CynX cyanate transporter

Probab=96.76  E-value=0.034  Score=43.31  Aligned_cols=83  Identities=7%  Similarity=-0.052  Sum_probs=57.3

Q ss_pred             HHhhhhhccccchhHHHHHHHHHHHHH---------------------------HH----------------HHHHHHHh
Q psy16105         19 YLYTRLAFRWNEYNYSTFYTAYYFTDF---------------------------LG----------------AVASLFSN   55 (130)
Q Consensus        19 ~ly~~~~f~W~~~~~g~~~~~~~~~~~---------------------------~~----------------~~~~~~~~   55 (130)
                      .-..++.+++++.+.|+..+...+...                           .+                ...+...+
T Consensus        23 lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~g~~  102 (355)
T TIGR00896        23 LPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIRSAPGTALLFAGTALIGVGIA  102 (355)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence            334677899999999999877654433                           00                01122223


Q ss_pred             hHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHh
Q psy16105         56 ASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTA  102 (130)
Q Consensus        56 ~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~  102 (130)
                      ...+...+.+.+.. ++|+|+..|..+....++..+++++...+.+.
T Consensus       103 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~  148 (355)
T TIGR00896       103 IINVLLPSLIKRDF-PQRVGLMTGLYSMALMGGAALAAAATVPLAQH  148 (355)
T ss_pred             HHhccchHHHHHhC-cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34455556666666 47999999999999999999999888777544

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=96.75  E-value=0.0029  Score=50.32  Aligned_cols=109  Identities=10%  Similarity=0.142  Sum_probs=69.3

Q ss_pred             ccchhHHHHHhhhhhccccchhHHHHHHHHHHHHH-----------------------HH----HH-H------------
Q psy16105         11 YQGEFTVMYLYTRLAFRWNEYNYSTFYTAYYFTDF-----------------------LG----AV-A------------   50 (130)
Q Consensus        11 ~~g~~~i~~ly~~~~f~W~~~~~g~~~~~~~~~~~-----------------------~~----~~-~------------   50 (130)
                      .......+..|.++++++++.+.|...+...+...                       ..    .. .            
T Consensus        18 ~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (396)
T TIGR00882        18 MSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSN   97 (396)
T ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            33445567778889999999999999888766554                       00    00 0            


Q ss_pred             --------HHHH----hhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHhccccCCchHHHHHHHH
Q psy16105         51 --------SLFS----NASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVL  118 (130)
Q Consensus        51 --------~~~~----~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t~~~~pg~~f~~~a~l  118 (130)
                              ..+.    +...|...+...+..  +|+++.+|......+++..++|++...++..    .+..+|++.+.+
T Consensus        98 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~----~~~~~f~~~~~~  171 (396)
T TIGR00882        98 ILVGAIVGGLYLGFVFSAGAGAIEAYIEKVS--RNSNFEYGKARMFGCVGWALCASIAGILFSI----DPQIVFWLGSGF  171 (396)
T ss_pred             HHHHHHHHHHHHHHHhccchhhHHHHHHHhh--hhcccccchhhhhcccHHHHHHHHHhhhhcc----CchHHHHHHHHH
Confidence                    0001    112344444444432  3456778888888889999999998877643    355688887777


Q ss_pred             HHHHHHH
Q psy16105        119 TSPALFI  125 (130)
Q Consensus       119 ~~~~~~l  125 (130)
                      .+...++
T Consensus       172 ~~~~~~~  178 (396)
T TIGR00882       172 ALILMLL  178 (396)
T ss_pred             HHHHHHH
Confidence            6555433

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=96.73  E-value=0.023  Score=45.05  Aligned_cols=58  Identities=12%  Similarity=0.053  Sum_probs=42.5

Q ss_pred             hHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHhccccCCchHHHHHHHH
Q psy16105         56 ASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVL  118 (130)
Q Consensus        56 ~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t~~~~pg~~f~~~a~l  118 (130)
                      ...|...++..+  .++|+|+.+|......+++.+++|++...+.+..  .|. ..|.+.+.+
T Consensus       110 ~~~p~~~al~~~--~~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~--g~~-~~f~~~~~~  167 (382)
T TIGR00902       110 AGMPIGDALANT--WQKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMF--DEQ-NILAILTAG  167 (382)
T ss_pred             cchhHHHHHHHH--HHHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHc--Chh-HHHHHHHHH
Confidence            346777777644  3578899999999999999999999999988751  133 345554444

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=96.67  E-value=0.043  Score=44.38  Aligned_cols=69  Identities=10%  Similarity=0.032  Sum_probs=47.9

Q ss_pred             hhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHhc----cc--cCCchHHHHHHHHHHHHHH
Q psy16105         55 NASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTAT----LD--FMPSTFLLMSLVLTSPALF  124 (130)
Q Consensus        55 ~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t----~~--~~pg~~f~~~a~l~~~~~~  124 (130)
                      +...|...+.+++..|++|||+..+..+....++.++++.+...+....    .+  .| ..+|++.+...++..+
T Consensus       135 g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gW-r~~f~~~~~~~~~~~~  209 (479)
T PRK10077        135 GLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGW-RYMFASEAIPALLFLM  209 (479)
T ss_pred             hHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCCh-HHHHHHHHHHHHHHHH
Confidence            4567888999999999999999999999999999988866554433211    11  13 2356666555544443

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=96.64  E-value=0.034  Score=45.49  Aligned_cols=66  Identities=11%  Similarity=-0.015  Sum_probs=47.9

Q ss_pred             hhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHhccccCCchHHHHHHHHHHHHHH
Q psy16105         55 NASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSPALF  124 (130)
Q Consensus        55 ~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t~~~~pg~~f~~~a~l~~~~~~  124 (130)
                      +...|...+++.+.. ++|+|+..|.......++..++|++...+.+.   +--..+|++.+++.+.+.+
T Consensus       123 ~~~~~~~~~~~~~~~-~~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~---~gwr~~f~~~~~~~~~~~v  188 (455)
T TIGR00892       123 AFNFQPSLTMLGKYF-YRRRPLANGLAMAGSPVFLSTLAPLNQYLFES---FGWRGSFLILGGLLLHCCV  188 (455)
T ss_pred             hhhhhHHHHHHHHHH-HhhHHHHHHHHHhcccHHHHHHHHHHHHHHHH---hChHHHHHHHHHHHHHHHH
Confidence            333355557777877 48999999999999999999999998888764   1223567777766654443

>TIGR00898 2A0119 cation transport protein

Probab=96.62  E-value=0.036  Score=45.34  Aligned_cols=68  Identities=6%  Similarity=-0.004  Sum_probs=49.6

Q ss_pred             HHhhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHH
Q psy16105         53 FSNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSPALFIF  126 (130)
Q Consensus        53 ~~~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t~~~~pg~~f~~~a~l~~~~~~l~  126 (130)
                      ..+...|...+++++.+|+++||+..+..+...+++.+++|.+...+-+     | ...|++.+...++..+..
T Consensus       193 ~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-----w-r~~~~~~~i~~~~~~~~~  260 (505)
T TIGR00898       193 GIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD-----W-RWLQLAVSLPTFLFFLLS  260 (505)
T ss_pred             hccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH-----H-HHHHHHHHHHHHHHHHHH
Confidence            3456789999999999999999999999999889998888877655433     3 234555555544444433

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=96.62  E-value=0.03  Score=46.31  Aligned_cols=88  Identities=9%  Similarity=0.040  Sum_probs=65.6

Q ss_pred             hHHHHHhhhhhccccchhHHHHHHHHHHHHH-----------------------------------------------HH
Q psy16105         15 FTVMYLYTRLAFRWNEYNYSTFYTAYYFTDF-----------------------------------------------LG   47 (130)
Q Consensus        15 ~~i~~ly~~~~f~W~~~~~g~~~~~~~~~~~-----------------------------------------------~~   47 (130)
                      ......|.++.+++++.+.|.......+...                                               ..
T Consensus       279 ~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~  358 (495)
T PRK14995        279 ELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGLM  358 (495)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHH
Confidence            3444566777789999999998865443322                                               01


Q ss_pred             HHHHHHHhhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHh
Q psy16105         48 AVASLFSNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTA  102 (130)
Q Consensus        48 ~~~~~~~~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~  102 (130)
                      ...+...+...|.....+.+.+|+|++|...+..+....++..+++.+.+.+++.
T Consensus       359 ~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~~  413 (495)
T PRK14995        359 ALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLSR  413 (495)
T ss_pred             HHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1122234566777888888899999999999999999999999999988888765

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=96.53  E-value=0.071  Score=42.10  Aligned_cols=43  Identities=9%  Similarity=0.060  Sum_probs=39.3

Q ss_pred             HhhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHH
Q psy16105         54 SNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIY   96 (130)
Q Consensus        54 ~~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~   96 (130)
                      .+...|...+.+++..|++|||+..+..+....++..+++++.
T Consensus       141 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~  183 (481)
T TIGR00879       141 VGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFG  183 (481)
T ss_pred             hhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            4566788899999999999999999999999999999999987

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK12307 putative sialic acid transporter; Provisional

Probab=96.49  E-value=0.038  Score=44.00  Aligned_cols=44  Identities=7%  Similarity=-0.121  Sum_probs=38.6

Q ss_pred             HHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHh
Q psy16105         59 IAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTA  102 (130)
Q Consensus        59 p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~  102 (130)
                      +.....+.+.+|++++|+..|+...+..++..++|++.+.+...
T Consensus       340 ~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~  383 (426)
T PRK12307        340 GLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGIT  383 (426)
T ss_pred             HHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHc
Confidence            44556778999999999999999999999999999999988755

>PTZ00207 hypothetical protein; Provisional

Probab=96.49  E-value=0.11  Score=44.74  Aligned_cols=65  Identities=11%  Similarity=0.168  Sum_probs=46.0

Q ss_pred             hhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHhccccCCchHHHHHHHHHHHHHH
Q psy16105         55 NASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSPALF  124 (130)
Q Consensus        55 ~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t~~~~pg~~f~~~a~l~~~~~~  124 (130)
                      +...++....+.+..| +|||++.|+......++..+.++++..++...    .+..|++.+.+.++..+
T Consensus       135 ~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~~----~~~~fl~l~vl~~vv~l  199 (591)
T PTZ00207        135 MLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFSDN----TSAYFFFLMSFALVVGI  199 (591)
T ss_pred             HHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----HHHHHHHHHHHHHHHHH
Confidence            3445566667777774 78899999999999999999888888887642    23455555555444333

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=96.48  E-value=0.15  Score=39.63  Aligned_cols=40  Identities=10%  Similarity=-0.056  Sum_probs=26.7

Q ss_pred             HHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHH
Q psy16105         57 SFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYN   97 (130)
Q Consensus        57 ~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~   97 (130)
                      ..|.......+.. |+++|+..+..+........+.+++.+
T Consensus       317 ~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~g~i~~~~~~  356 (385)
T TIGR00710       317 ISSIAMAYALEDF-PHVAGTASALFGTLRLVLGAIVGYLVS  356 (385)
T ss_pred             HHHHHHHHHhccC-cccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455545555554 478999999988887765556666655

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=96.48  E-value=0.026  Score=46.70  Aligned_cols=54  Identities=9%  Similarity=0.042  Sum_probs=47.8

Q ss_pred             HHHHHHHhhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHH
Q psy16105         48 AVASLFSNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYT  101 (130)
Q Consensus        48 ~~~~~~~~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~  101 (130)
                      ...+..+.+..|...++++|..|++.||+.+|......++++.+++.+.+....
T Consensus       389 ~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~  442 (475)
T TIGR00924       389 LFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAV  442 (475)
T ss_pred             HHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            345566789999999999999999999999999999999999999998886653

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=96.44  E-value=0.019  Score=51.94  Aligned_cols=55  Identities=13%  Similarity=-0.075  Sum_probs=49.3

Q ss_pred             HHHHHHHhhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHh
Q psy16105         48 AVASLFSNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTA  102 (130)
Q Consensus        48 ~~~~~~~~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~  102 (130)
                      .+.+..++...|+.++++.+.++++|+++..|..+...+++.+++|++...+...
T Consensus       116 ~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~  170 (1140)
T PRK06814        116 FLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATIS  170 (1140)
T ss_pred             HHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3445556788999999999999999999999999999999999999999999764

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=96.43  E-value=0.13  Score=40.70  Aligned_cols=48  Identities=6%  Similarity=-0.101  Sum_probs=39.5

Q ss_pred             HhhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHh
Q psy16105         54 SNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTA  102 (130)
Q Consensus        54 ~~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~  102 (130)
                      .+...|...+...+..| +++|+..++.+..+.++..+++.+...+...
T Consensus       313 ~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~  360 (394)
T PRK11652        313 AGMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQT  360 (394)
T ss_pred             HHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence            35568888888888775 6889999999999999999999988776433

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=96.43  E-value=0.074  Score=47.81  Aligned_cols=53  Identities=17%  Similarity=0.204  Sum_probs=47.2

Q ss_pred             HHHHHhhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHh
Q psy16105         50 ASLFSNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTA  102 (130)
Q Consensus        50 ~~~~~~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~  102 (130)
                      .+...++..|+..+++++.+|++|+|+..|..+...+++.+++|++...+...
T Consensus       113 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~  165 (1146)
T PRK08633        113 LGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFES  165 (1146)
T ss_pred             HHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34456778899999999999999999999999999999999999999988764

>KOG2533|consensus

Probab=96.42  E-value=0.015  Score=49.02  Aligned_cols=81  Identities=16%  Similarity=0.222  Sum_probs=64.9

Q ss_pred             HHHHHHHhhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHh----ccccCCchHHHHHHHHH-HHH
Q psy16105         48 AVASLFSNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTA----TLDFMPSTFLLMSLVLT-SPA  122 (130)
Q Consensus        48 ~~~~~~~~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~----t~~~~pg~~f~~~a~l~-~~~  122 (130)
                      ...+.+++..-|+...++++..+++|||+.+|+..+..++++++++.+...+++.    ....| +..|++.+++. ..+
T Consensus       142 ~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW-~~~FiI~G~i~~~~g  220 (495)
T KOG2533|consen  142 FLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGW-RWLFIIEGVITLVLG  220 (495)
T ss_pred             HHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCc-eeehhHHHHHHHHHH
Confidence            4567788899999999999999999999999999999999999999999998872    22223 46788877776 455


Q ss_pred             HHHHHhc
Q psy16105        123 LFIFLCH  129 (130)
Q Consensus       123 ~~l~~~~  129 (130)
                      ++++.|+
T Consensus       221 i~~f~~l  227 (495)
T KOG2533|consen  221 IVVFFFL  227 (495)
T ss_pred             heEEEEe
Confidence            5555443

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=96.40  E-value=0.12  Score=43.20  Aligned_cols=42  Identities=12%  Similarity=0.096  Sum_probs=31.5

Q ss_pred             hhHHHHHHHHHhcCCCccchHHHHHHHHHHHHH----hHhhHHHHH
Q psy16105         55 NASFIAMRAIISKLTSAEELGKVMSAFMLFEAI----APMIYNPIY   96 (130)
Q Consensus        55 ~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl----~~~i~~~l~   96 (130)
                      +...|.....+++..|++|||+.+|+.+...++    ++++.|++.
T Consensus       142 g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i  187 (462)
T PRK15034        142 GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVI  187 (462)
T ss_pred             HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            456677888899999999999999999655544    445555544

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=96.33  E-value=0.18  Score=44.63  Aligned_cols=48  Identities=13%  Similarity=0.113  Sum_probs=41.7

Q ss_pred             HHhhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHH
Q psy16105         53 FSNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVY  100 (130)
Q Consensus        53 ~~~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy  100 (130)
                      ..+...|...++++...|+++||+..+.......++.++++.+...+.
T Consensus       268 g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il  315 (742)
T TIGR01299       268 GIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAII  315 (742)
T ss_pred             HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345678999999999999999999999999999999999988766554

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=96.30  E-value=0.15  Score=42.08  Aligned_cols=39  Identities=8%  Similarity=0.043  Sum_probs=30.8

Q ss_pred             HHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHH
Q psy16105         61 MRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAV   99 (130)
Q Consensus        61 ~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~i   99 (130)
                      ....+++..|++|||+..|.......++..+++.+...+
T Consensus       144 ~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i  182 (476)
T PLN00028        144 CQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLV  182 (476)
T ss_pred             HHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456788999999999999999887777777776655444

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=96.30  E-value=0.19  Score=39.74  Aligned_cols=73  Identities=14%  Similarity=0.017  Sum_probs=52.9

Q ss_pred             HHhhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHh
Q psy16105         53 FSNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSPALFIFLC  128 (130)
Q Consensus        53 ~~~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t~~~~pg~~f~~~a~l~~~~~~l~~~  128 (130)
                      +.....|...++..+..+++|++...+......+++.++++.+...+.+.   .-...+|++.+++.+...+...+
T Consensus       110 ~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~---~gw~~~f~~~a~l~~~~~~~~~~  182 (390)
T TIGR02718       110 ASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGK---FGQRPAFLLVACVPLASLVCVLW  182 (390)
T ss_pred             HHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCHHHHHHHHHHHHHHHHHHHHH
Confidence            44567777888888888888888887777777788888888777777654   33456888888877665555443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=96.19  E-value=0.14  Score=42.11  Aligned_cols=71  Identities=14%  Similarity=0.111  Sum_probs=55.7

Q ss_pred             HhhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHH
Q psy16105         54 SNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSPALFIFL  127 (130)
Q Consensus        54 ~~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t~~~~pg~~f~~~a~l~~~~~~l~~  127 (130)
                      .+...+...++..|+||||+|||..+.+..-.+++.+++.|+.+.+=+.  -.|. ..|++.+++-+++++..+
T Consensus       115 ~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~--~GWR-~~F~~ia~l~ll~~~~~~  185 (394)
T COG2814         115 HGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQL--FGWR-ATFLAIAVLALLALLLLW  185 (394)
T ss_pred             HHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHH--hhHH-HHHHHHHHHHHHHHHHHH
Confidence            4778889999999999999999999999999999999999999977332  0133 466666666655555443

>PRK10054 putative transporter; Provisional

Probab=96.18  E-value=0.05  Score=43.58  Aligned_cols=69  Identities=10%  Similarity=0.067  Sum_probs=52.4

Q ss_pred             HHhhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHH
Q psy16105         53 FSNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSPALFI  125 (130)
Q Consensus        53 ~~~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t~~~~pg~~f~~~a~l~~~~~~l  125 (130)
                      ......|..++.+.+.+|++.+|+.++..+ ...++..++|++...+++.   .-|...|++.+.+...+.++
T Consensus       311 g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~---~g~~~~~~~~~~~~~~~~~~  379 (395)
T PRK10054        311 GEIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTT---LPPWSLFVILALAIVAAWLL  379 (395)
T ss_pred             HHHHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHH---cChhhHHHHHHHHHHHHHHH
Confidence            345667899999999999999999998654 6668999999999999986   34555666655555444443

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=96.18  E-value=0.14  Score=40.83  Aligned_cols=84  Identities=11%  Similarity=0.137  Sum_probs=57.3

Q ss_pred             HHHhhhhhccccchhHHHHHHHHHHHHH-------------------------HH-------------------------
Q psy16105         18 MYLYTRLAFRWNEYNYSTFYTAYYFTDF-------------------------LG-------------------------   47 (130)
Q Consensus        18 ~~ly~~~~f~W~~~~~g~~~~~~~~~~~-------------------------~~-------------------------   47 (130)
                      ...|..+.++.++.+.|...+...+.+.                         .+                         
T Consensus        22 l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~  101 (437)
T TIGR00792        22 LLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVY  101 (437)
T ss_pred             HHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHH
Confidence            4455677899999999999988776665                         00                         


Q ss_pred             -----HHHHHHHhhHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHhHhhHHHHHHHHHH
Q psy16105         48 -----AVASLFSNASFIAMRAIISKLT-SAEELGKVMSAFMLFEAIAPMIYNPIYNAVYT  101 (130)
Q Consensus        48 -----~~~~~~~~~~~p~~rs~iSk~v-~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~  101 (130)
                           .+.+...+...+..+++.+... |++||+++.+..+....++.++++.+...+..
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~  161 (437)
T TIGR00792       102 AYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVS  161 (437)
T ss_pred             HHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 0011111223345567777766 67999999999998888888887776666654

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR01272 gluP glucose/galactose transporter

Probab=96.14  E-value=0.087  Score=41.19  Aligned_cols=90  Identities=7%  Similarity=0.015  Sum_probs=62.8

Q ss_pred             ccchhHHHHHhhhhh--ccccchhHHHHHHHHHHHHH-------------------------------------------
Q psy16105         11 YQGEFTVMYLYTRLA--FRWNEYNYSTFYTAYYFTDF-------------------------------------------   45 (130)
Q Consensus        11 ~~g~~~i~~ly~~~~--f~W~~~~~g~~~~~~~~~~~-------------------------------------------   45 (130)
                      -.+..+....|.+++  +++++++.+...+......+                                           
T Consensus       156 e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~~~  235 (310)
T TIGR01272       156 EVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVAMW  235 (310)
T ss_pred             HHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            344556677888754  89999999998877644333                                           


Q ss_pred             HHHHHHHHHhhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHh
Q psy16105         46 LGAVASLFSNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTA  102 (130)
Q Consensus        46 ~~~~~~~~~~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~  102 (130)
                      ....++.+.+...|...+...+..|++ .|+.-+.. .+..++..+.|++...+-+.
T Consensus       236 ~~~l~g~~~s~i~P~~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad~  290 (310)
T TIGR01272       236 FVLALGLFNSIMFPTIFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLADC  290 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHHh
Confidence            111234455788999999999988653 45555554 56778999999998888764

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK09528 lacY galactoside permease; Reviewed

Probab=96.12  E-value=0.14  Score=40.94  Aligned_cols=66  Identities=8%  Similarity=0.045  Sum_probs=46.1

Q ss_pred             HHHHHHHHHhcCCCccchHHHHHH-HHHHHHHhHhhHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHH
Q psy16105         57 SFIAMRAIISKLTSAEELGKVMSA-FMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSPALFI  125 (130)
Q Consensus        57 ~~p~~rs~iSk~v~~~eqG~~~~~-~~~~~sl~~~i~~~l~~~iy~~t~~~~pg~~f~~~a~l~~~~~~l  125 (130)
                      ..+.....+++..|++.++..++. .+....++..++|++...+++..   -....|.+.+++.++..++
T Consensus       332 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~---G~~~~f~~~~~~~~i~~~~  398 (420)
T PRK09528        332 LLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSI---GFQGTYLILGGIVLLFTLI  398 (420)
T ss_pred             HHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhh---CchHHHHHHHHHHHHHHHH
Confidence            344455677888899998888765 56677899999999999998752   2345666666655444433

>PRK10091 MFS transport protein AraJ; Provisional

Probab=96.07  E-value=0.41  Score=37.88  Aligned_cols=56  Identities=16%  Similarity=0.089  Sum_probs=35.7

Q ss_pred             HHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHhccccCCchHHHHHHHHHHHH
Q psy16105         63 AIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSPA  122 (130)
Q Consensus        63 s~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t~~~~pg~~f~~~a~l~~~~  122 (130)
                      ....+..+++++|...+  .....++..++|++...+++.+.+ + ...|.+.+++..+.
T Consensus       313 ~~~~~~~~~~~~~~~~~--~~~~~~g~~~Gp~~~G~l~~~~~~-~-~~~~~~~~~~~~~~  368 (382)
T PRK10091        313 LLLQNAKGGELLGAAGG--QIAFNLGSAIGAYCGGMMLTLGLA-Y-NYVALPAALLSFAA  368 (382)
T ss_pred             HHHHhCCcchHHHHHHH--HHHHHHHHHHHHHHhHHHHHcccC-c-chHHHHHHHHHHHH
Confidence            34444455666776543  456789999999999999987533 2 34555555555433

>KOG3764|consensus

Probab=96.06  E-value=0.039  Score=45.79  Aligned_cols=70  Identities=16%  Similarity=0.112  Sum_probs=56.8

Q ss_pred             hhHHHHHHHHHhcCCCc-cchHHHHHHHHHHHHHhHhhHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHH
Q psy16105         55 NASFIAMRAIISKLTSA-EELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSPALFIFL  127 (130)
Q Consensus        55 ~~~~p~~rs~iSk~v~~-~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t~~~~pg~~f~~~a~l~~~~~~l~~  127 (130)
                      .....+=-+++.|..|+ +|||+++|..-..-+++-+++||....+|..   .-..+||++.+++.+....+..
T Consensus       174 A~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~---~Gk~aPFlVL~~v~Lld~~L~l  244 (464)
T KOG3764|consen  174 AFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEF---AGKSAPFLVLAIVLLLDGALQL  244 (464)
T ss_pred             HHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhh---cCCcCcHHHHHHHHHHHHHHHH
Confidence            34555556778887755 5679999999999999999999999999987   4567899999999877666544

>TIGR01272 gluP glucose/galactose transporter

Probab=95.94  E-value=0.072  Score=41.65  Aligned_cols=54  Identities=11%  Similarity=0.039  Sum_probs=48.3

Q ss_pred             HHHHHHhhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHh
Q psy16105         49 VASLFSNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTA  102 (130)
Q Consensus        49 ~~~~~~~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~  102 (130)
                      +++...++.+++.+..++..-|+|++.+.++..+...+++.+++|.+.+.+...
T Consensus        19 ~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~   72 (310)
T TIGR01272        19 VLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILS   72 (310)
T ss_pred             HHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhc
Confidence            445567889999999999999999999999999999999999999999987743

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK15075 citrate-proton symporter; Provisional

Probab=95.93  E-value=0.25  Score=39.91  Aligned_cols=49  Identities=16%  Similarity=-0.009  Sum_probs=36.5

Q ss_pred             hhHHHHHHHHHhcCCCccchHHHHHHHHHHHH-HhHhhHHHHHHHHHHhc
Q psy16105         55 NASFIAMRAIISKLTSAEELGKVMSAFMLFEA-IAPMIYNPIYNAVYTAT  103 (130)
Q Consensus        55 ~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~s-l~~~i~~~l~~~iy~~t  103 (130)
                      +...|.....+++.+|++++|..++....+.. ++..++|++...+-+..
T Consensus       346 g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~  395 (434)
T PRK15075        346 GSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVT  395 (434)
T ss_pred             HHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhc
Confidence            34456667788999999999999998655444 45777888888776653

>PRK11010 ampG muropeptide transporter; Validated

Probab=95.92  E-value=0.09  Score=43.64  Aligned_cols=75  Identities=17%  Similarity=0.097  Sum_probs=57.4

Q ss_pred             HHHHHHhhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHH
Q psy16105         49 VASLFSNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSPALFI  125 (130)
Q Consensus        49 ~~~~~~~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t~~~~pg~~f~~~a~l~~~~~~l  125 (130)
                      +.+.+.+...|...++.++..|+||||+..+.......++.++++++...+.+... .| ..+|++.+.+.++..+.
T Consensus       116 l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~-GW-r~~f~i~a~l~ll~~l~  190 (491)
T PRK11010        116 VIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYL-GW-QGMYWLMAALLIPCIIA  190 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CH-HHHHHHHHHHHHHHHHH
Confidence            44556778899999999999999999999999999999999999998888876211 13 34666666665554443

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=95.91  E-value=0.35  Score=39.77  Aligned_cols=104  Identities=14%  Similarity=0.024  Sum_probs=81.2

Q ss_pred             hhhhccccchhHHHHHHHHHHHHH-----------------------------------------HHHHHHHHHhhHHHH
Q psy16105         22 TRLAFRWNEYNYSTFYTAYYFTDF-----------------------------------------LGAVASLFSNASFIA   60 (130)
Q Consensus        22 ~~~~f~W~~~~~g~~~~~~~~~~~-----------------------------------------~~~~~~~~~~~~~p~   60 (130)
                      .++..+-++++.++.+-..|+..+                                         ........+-...|.
T Consensus       238 L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr~~~~~l~~~~~l~a~~~l~l~~~~~~~~~~~~~~~~wg~a~~~~  317 (394)
T COG2814         238 LESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADRGPRRALIAALLLLALALLALTFTGASPALALALLFLWGFAFSPA  317 (394)
T ss_pred             HHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhh
Confidence            466778899899988877776554                                         111111234456777


Q ss_pred             HHHHHhcCCC--ccchHHHHHHHHHHHHHhHhhHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHh
Q psy16105         61 MRAIISKLTS--AEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSPALFIFLC  128 (130)
Q Consensus        61 ~rs~iSk~v~--~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t~~~~pg~~f~~~a~l~~~~~~l~~~  128 (130)
                      .++...+..+  ||+++...+.+.+.-+++.-++..+.+.+++.   .-.+...++++.+.+.++++..|
T Consensus       318 ~~~~~~~~a~~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~---~g~~~~~~~~a~l~~~a~~~~~~  384 (394)
T COG2814         318 LQGLQTRLARLAPDAADLAGSLNVAAFNLGIALGAALGGLVLDA---LGYAATGWVGAALLLLALLLALL  384 (394)
T ss_pred             hhHHHHHhcccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hchHHHHHHHHHHHHHHHHHHHH
Confidence            7777777776  79999999999999999999999999999998   66778889999998888888765

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=95.83  E-value=0.03  Score=46.53  Aligned_cols=47  Identities=15%  Similarity=0.090  Sum_probs=42.8

Q ss_pred             HHHHhhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHH
Q psy16105         51 SLFSNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYN   97 (130)
Q Consensus        51 ~~~~~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~   97 (130)
                      +.+++..-|.+...+++..|++|||+..|+=+..+++++.+.|++.+
T Consensus       128 g~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~  174 (448)
T COG2271         128 GWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVAL  174 (448)
T ss_pred             HHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHH
Confidence            34567788999999999999999999999999999999999999884

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=95.82  E-value=0.21  Score=39.77  Aligned_cols=50  Identities=10%  Similarity=0.032  Sum_probs=42.8

Q ss_pred             HHhhHHHHHHHHHhcCCC-------ccchHHHHHHHHHHHHHhHhhHHHHHHHHHHh
Q psy16105         53 FSNASFIAMRAIISKLTS-------AEELGKVMSAFMLFEAIAPMIYNPIYNAVYTA  102 (130)
Q Consensus        53 ~~~~~~p~~rs~iSk~v~-------~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~  102 (130)
                      ..+...|...+++++.+|       ++++|..+|+.+....++..+++.+...+++.
T Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~  380 (437)
T TIGR00792       324 GQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGI  380 (437)
T ss_pred             HHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345678889999999886       45689999999999999999999999988765

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00898 2A0119 cation transport protein

Probab=95.48  E-value=0.42  Score=39.10  Aligned_cols=70  Identities=10%  Similarity=-0.068  Sum_probs=52.9

Q ss_pred             HhhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHh
Q psy16105         54 SNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSPALFIFLC  128 (130)
Q Consensus        54 ~~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t~~~~pg~~f~~~a~l~~~~~~l~~~  128 (130)
                      .....+......+...|++.||+..|..+....++.+++|.+.. +-.    ..+..++++.+++.+.+.++..+
T Consensus       424 ~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~  493 (505)
T TIGR00898       424 ITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-LGE----KWLFLPLVLFGGLALLAGILTLF  493 (505)
T ss_pred             HHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HHH----HHHhhHHHHHHHHHHHHHHHHHc
Confidence            34556788889999999999999999999999999999999887 321    23455677766666555554443

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=95.41  E-value=0.5  Score=38.17  Aligned_cols=69  Identities=10%  Similarity=0.040  Sum_probs=49.1

Q ss_pred             HHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHhc--c-ccCCchHHHHHHHHHHHHHHHH
Q psy16105         58 FIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTAT--L-DFMPSTFLLMSLVLTSPALFIF  126 (130)
Q Consensus        58 ~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t--~-~~~pg~~f~~~a~l~~~~~~l~  126 (130)
                      .|...+.+++..|+++||+..|.......++.++++.++..+....  . +......|++.+++.+.+.++.
T Consensus       382 ~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  453 (479)
T PRK10077        382 GPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFM  453 (479)
T ss_pred             cchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHH
Confidence            3778899999999999999999999999999999988776554211  1 1223445666565555444443

>PRK09952 shikimate transporter; Provisional

Probab=95.36  E-value=1.1  Score=36.25  Aligned_cols=69  Identities=7%  Similarity=-0.120  Sum_probs=48.0

Q ss_pred             hhHHHHHHHHHhcCCCccchHHHHHHHHHH-HHHhHhhHHHHHHHHHHhccccCCchHHHHHHHHHHHHHH
Q psy16105         55 NASFIAMRAIISKLTSAEELGKVMSAFMLF-EAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSPALF  124 (130)
Q Consensus        55 ~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~-~sl~~~i~~~l~~~iy~~t~~~~pg~~f~~~a~l~~~~~~  124 (130)
                      +...+...+++++.+|++.++...|....+ ..++..++|.+...+++.+-+.+. .++...+++.+++.+
T Consensus       358 ~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~-~~~~~~~~~~~i~~v  427 (438)
T PRK09952        358 DMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWH-SVAIYLLAGCLISAM  427 (438)
T ss_pred             HHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCch-HHHHHHHHHHHHHHH
Confidence            344677889999999999999888886655 448889999999999876533343 334444444444433

>PRK10133 L-fucose transporter; Provisional

Probab=95.31  E-value=0.87  Score=37.20  Aligned_cols=80  Identities=15%  Similarity=0.169  Sum_probs=58.0

Q ss_pred             hhhhhccccchhHHHHHHHHHHHHH---------------------------HH--------------------HHHHHH
Q psy16105         21 YTRLAFRWNEYNYSTFYTAYYFTDF---------------------------LG--------------------AVASLF   53 (130)
Q Consensus        21 y~~~~f~W~~~~~g~~~~~~~~~~~---------------------------~~--------------------~~~~~~   53 (130)
                      ..++.|+.|+.+.|...+...+...                           ++                    .+.+..
T Consensus        51 ~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g  130 (438)
T PRK10133         51 QFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAG  130 (438)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            3488999999999999876543332                           00                    112333


Q ss_pred             HhhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHH
Q psy16105         54 SNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVY  100 (130)
Q Consensus        54 ~~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy  100 (130)
                      .+...++.+..+.+..|++|+++..+..+...+++..++|.+...+-
T Consensus       131 ~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~  177 (438)
T PRK10133        131 LGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI  177 (438)
T ss_pred             HHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46778888888887766666666899999999999999998876543

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=95.20  E-value=1.5  Score=36.18  Aligned_cols=46  Identities=7%  Similarity=-0.010  Sum_probs=35.8

Q ss_pred             HHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHhc
Q psy16105         58 FIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTAT  103 (130)
Q Consensus        58 ~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t  103 (130)
                      .+.....+++..|++.+|+..|....+..+...++|.+.+.+.+.+
T Consensus       360 ~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~  405 (490)
T PRK10642        360 TGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVEST  405 (490)
T ss_pred             HHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3455667778899999999999866666677788899988887653

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=95.13  E-value=0.51  Score=37.41  Aligned_cols=72  Identities=8%  Similarity=0.009  Sum_probs=48.6

Q ss_pred             HHHHhhHHHHHHHHHhcC----CCccchHHHHHH-HHHHHHHhHhhHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHH
Q psy16105         51 SLFSNASFIAMRAIISKL----TSAEELGKVMSA-FMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSPALFI  125 (130)
Q Consensus        51 ~~~~~~~~p~~rs~iSk~----v~~~eqG~~~~~-~~~~~sl~~~i~~~l~~~iy~~t~~~~pg~~f~~~a~l~~~~~~l  125 (130)
                      ..+.+...|...+...+.    .|++.++..++. .+....++..++|++...+++..   -....|.+.+.+..+..++
T Consensus       314 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~---G~~~~f~~~~~~~~i~~~~  390 (396)
T TIGR00882       314 KMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSI---GFQGAYLVLGCIVLLFTLI  390 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhc---ccHHHHHHHHHHHHHHHHH
Confidence            344567777776655544    455666666665 56788999999999999999863   2356777777666554444

>TIGR00805 oat sodium-independent organic anion transporter

Probab=94.93  E-value=0.11  Score=44.91  Aligned_cols=50  Identities=6%  Similarity=-0.024  Sum_probs=44.6

Q ss_pred             HHhhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHh
Q psy16105         53 FSNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTA  102 (130)
Q Consensus        53 ~~~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~  102 (130)
                      ..+...|...+.++..+|++++|+..|.......+++.+++++...+.+.
T Consensus       185 G~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~  234 (633)
T TIGR00805       185 GATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQI  234 (633)
T ss_pred             cCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhc
Confidence            34566788899999999999999999999999999999999998887654

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PRK11043 putative transporter; Provisional

Probab=94.82  E-value=0.93  Score=35.84  Aligned_cols=47  Identities=11%  Similarity=0.036  Sum_probs=36.7

Q ss_pred             HhhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHH
Q psy16105         54 SNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYT  101 (130)
Q Consensus        54 ~~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~  101 (130)
                      .+...|...+...+.. |+++|+..|..+.+.......++++.+.+.+
T Consensus       310 ~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~  356 (401)
T PRK11043        310 NGAIYPIVVAQALRPF-PQATGKAAALQNTLQLGLCFLASLLVSALIS  356 (401)
T ss_pred             HHHHHHHHHHHHhhhC-cccChHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            3556677766666666 4689999999999998888888888887754

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=94.71  E-value=0.49  Score=38.24  Aligned_cols=59  Identities=10%  Similarity=-0.046  Sum_probs=41.0

Q ss_pred             HHHhcCCCccchHHHHHHHHHHHHHhH-hhHHHHHHHHHHhccccCCchHHHHHHHHHHHHHH
Q psy16105         63 AIISKLTSAEELGKVMSAFMLFEAIAP-MIYNPIYNAVYTATLDFMPSTFLLMSLVLTSPALF  124 (130)
Q Consensus        63 s~iSk~v~~~eqG~~~~~~~~~~sl~~-~i~~~l~~~iy~~t~~~~pg~~f~~~a~l~~~~~~  124 (130)
                      ....+..|++++|+..|..+....++. .++|.+...+.+..   -....|.+.+++.+.+++
T Consensus       368 ~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~---g~~~~~~~~~~~~~~~~~  427 (438)
T TIGR00712       368 LHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF---GWDGGFMVMIGGSILAVI  427 (438)
T ss_pred             HHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhc---cchHHHHHHHHHHHHHHH
Confidence            456788899999999999988877764 67888888877642   123455555554444433

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>KOG2504|consensus

Probab=94.68  E-value=0.21  Score=42.23  Aligned_cols=57  Identities=26%  Similarity=0.457  Sum_probs=46.9

Q ss_pred             HHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHhcccc-----CCchHHHHHHHHH
Q psy16105         63 AIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDF-----MPSTFLLMSLVLT  119 (130)
Q Consensus        63 s~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t~~~-----~pg~~f~~~a~l~  119 (130)
                      -++.+.++.|+....+|.....++++.+++||+...+|+.+-++     +-|...++++.+.
T Consensus       411 ~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~  472 (509)
T KOG2504|consen  411 VILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLL  472 (509)
T ss_pred             HHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHH
Confidence            47789999999999999999999999999999999998887542     5555555555444

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=94.56  E-value=0.056  Score=44.65  Aligned_cols=122  Identities=11%  Similarity=0.067  Sum_probs=84.3

Q ss_pred             EEEEcccccchhHHHHHhhhhhccccchhHHHHHHHHHHHHH-----------------------H--------------
Q psy16105          4 VVVLNGPYQGEFTVMYLYTRLAFRWNEYNYSTFYTAYYFTDF-----------------------L--------------   46 (130)
Q Consensus         4 ~~~~~~~~~g~~~i~~ly~~~~f~W~~~~~g~~~~~~~~~~~-----------------------~--------------   46 (130)
                      |+..++.|.|....+..|.++.|+-|+.+.|.+-+...+...                       .              
T Consensus       227 Y~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~  306 (417)
T COG2223         227 YFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLT  306 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHcccc
Confidence            455678889999999999999999999999977766554443                       0              


Q ss_pred             --------------HHHHHHHHhhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHhccccCCchHH
Q psy16105         47 --------------GAVASLFSNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFL  112 (130)
Q Consensus        47 --------------~~~~~~~~~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t~~~~pg~~f  112 (130)
                                    -..+..+.++.+-++.-++...- ++|.|.+-|..+.+.+++...=|..+...|+.|=+  +...|
T Consensus       307 ~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if-~~~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~--~~~~f  383 (417)
T COG2223         307 GFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIF-PKETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGS--YTGAF  383 (417)
T ss_pred             ccccCcchHHHHHHHHHHHHHhccCcchheeechHHH-HhhhhHHHHHHHHhccccccchhHHHHHHHHhccc--HHHHH
Confidence                          01111122222223332333222 56999999999999999999999999999998753  33456


Q ss_pred             HHHHHHHHHHHHHHHh
Q psy16105        113 LMSLVLTSPALFIFLC  128 (130)
Q Consensus       113 ~~~a~l~~~~~~l~~~  128 (130)
                      .+-..+.+.+.++.++
T Consensus       384 ~~~~~~~~~a~v~~~~  399 (417)
T COG2223         384 MLLLAFYLVALVLTWA  399 (417)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            6666666666666654

>PRK09669 putative symporter YagG; Provisional

Probab=94.55  E-value=1.6  Score=35.26  Aligned_cols=83  Identities=16%  Similarity=0.080  Sum_probs=56.6

Q ss_pred             HHHHhhhhhccccchhHHHHHHHHHHHHH---------------------------------------------------
Q psy16105         17 VMYLYTRLAFRWNEYNYSTFYTAYYFTDF---------------------------------------------------   45 (130)
Q Consensus        17 i~~ly~~~~f~W~~~~~g~~~~~~~~~~~---------------------------------------------------   45 (130)
                      ....|..+.+++++.+.|..+++.-+.+.                                                   
T Consensus        31 ~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~  110 (444)
T PRK09669         31 FLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKII  110 (444)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHH
Confidence            34455567899999999999988877766                                                   


Q ss_pred             ----HHHHHHHHHhhHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHhHhhHHHHHHHH
Q psy16105         46 ----LGAVASLFSNASFIAMRAIISKLT-SAEELGKVMSAFMLFEAIAPMIYNPIYNAV   99 (130)
Q Consensus        46 ----~~~~~~~~~~~~~p~~rs~iSk~v-~~~eqG~~~~~~~~~~sl~~~i~~~l~~~i   99 (130)
                          ...+.............++.+... +++||+++.+.-.....++..+++.+...+
T Consensus       111 ~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl  169 (444)
T PRK09669        111 YACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPL  169 (444)
T ss_pred             HHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                000111122345555667777776 679999998888888888777776654443

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=94.55  E-value=0.89  Score=37.35  Aligned_cols=63  Identities=17%  Similarity=0.257  Sum_probs=41.4

Q ss_pred             HHHHHHHHHhcCC--CccchHHHHHHHHHHHHHhHhhHHHHHHHHHHhccccCCchHHHHHHHHHHHH
Q psy16105         57 SFIAMRAIISKLT--SAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSPA  122 (130)
Q Consensus        57 ~~p~~rs~iSk~v--~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t~~~~pg~~f~~~a~l~~~~  122 (130)
                      ..-..-++.+...  +|+++|++++......+++.+++..+...+++.   .-|...|.+.+.+..+.
T Consensus       103 ~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~---~~~~~~f~i~~~~~~l~  167 (433)
T PF03092_consen  103 ADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDS---FGPQGVFLISAALPLLM  167 (433)
T ss_pred             HHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhc---CCCeEEehHHHHHHHHH
Confidence            3344444444443  334499999999999999999998888777665   23444566666554433

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=94.40  E-value=0.41  Score=39.06  Aligned_cols=47  Identities=15%  Similarity=0.081  Sum_probs=41.9

Q ss_pred             hHHHHHHHHHhcCCCccchHHHHHHHHHH-HHHhHhhHHHHHHHHHHh
Q psy16105         56 ASFIAMRAIISKLTSAEELGKVMSAFMLF-EAIAPMIYNPIYNAVYTA  102 (130)
Q Consensus        56 ~~~p~~rs~iSk~v~~~eqG~~~~~~~~~-~sl~~~i~~~l~~~iy~~  102 (130)
                      +..++....+.+.+|+|.+++.|+..+.+ ..++..++..+...+|+.
T Consensus       317 ~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~  364 (400)
T PF03825_consen  317 LFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDA  364 (400)
T ss_pred             HHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            45677889999999999999999998876 569999999999999987

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=94.39  E-value=2.2  Score=34.37  Aligned_cols=65  Identities=6%  Similarity=-0.027  Sum_probs=39.7

Q ss_pred             HHHHHHHHhcCCCccchHHHHHHHHHHHHH-hHhhHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHH
Q psy16105         58 FIAMRAIISKLTSAEELGKVMSAFMLFEAI-APMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSPALFI  125 (130)
Q Consensus        58 ~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl-~~~i~~~l~~~iy~~t~~~~pg~~f~~~a~l~~~~~~l  125 (130)
                      .+......++..|++.||...|....+.++ .....|.+.. +.+.+ . .....++..++..+++.+.
T Consensus       354 ~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~-~l~~~-g-~~~~~~~~~~~~~~i~~~~  419 (432)
T PRK10406        354 TSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVAL-SLKSI-G-METAFFWYVTLMAVVAFLV  419 (432)
T ss_pred             HHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHH-HHHHh-C-CCcHHHHHHHHHHHHHHHH
Confidence            344566778999999999999999877654 2444555455 44433 2 2234455555555544443

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=94.25  E-value=0.41  Score=38.87  Aligned_cols=56  Identities=11%  Similarity=0.081  Sum_probs=36.4

Q ss_pred             ccchHHHHHHHHHHHHHhHhhHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHH
Q psy16105         71 AEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSPALFIF  126 (130)
Q Consensus        71 ~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t~~~~pg~~f~~~a~l~~~~~~l~  126 (130)
                      ++..|.+.|+.+....++++++|.+...+.+.+-..--...|.+.+++.+++.++.
T Consensus       391 ~~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~  446 (465)
T TIGR00894       391 PRFLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFY  446 (465)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHe
Confidence            45788888888888888888888887766543211101345666666666665544

>TIGR00883 2A0106 metabolite-proton symporter

Probab=94.17  E-value=0.35  Score=37.27  Aligned_cols=70  Identities=11%  Similarity=0.020  Sum_probs=48.9

Q ss_pred             hhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHhc----c-ccCCchHHHHHHHHHHHHHH
Q psy16105         55 NASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTAT----L-DFMPSTFLLMSLVLTSPALF  124 (130)
Q Consensus        55 ~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t----~-~~~pg~~f~~~a~l~~~~~~  124 (130)
                      +...|+.++.+++..|++|||+..+..+....++.++++.+...+...-    . ..-...+|++.+.+.+.+..
T Consensus       111 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~  185 (394)
T TIGR00883       111 GGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLY  185 (394)
T ss_pred             cccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHH
Confidence            3446777889999999999999999999999999999998776553310    0 11112456666555544443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=93.96  E-value=0.46  Score=39.62  Aligned_cols=51  Identities=20%  Similarity=0.157  Sum_probs=44.4

Q ss_pred             HHHHHHhhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHH
Q psy16105         49 VASLFSNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAV   99 (130)
Q Consensus        49 ~~~~~~~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~i   99 (130)
                      +.+..+.+..|...+.++|..|++.+|+++|......++++.++..+.+..
T Consensus       391 l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~  441 (500)
T PRK09584        391 LQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLM  441 (500)
T ss_pred             HHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            445567899999999999999999999999999988888998888887744

>PRK09848 glucuronide transporter; Provisional

Probab=93.92  E-value=0.16  Score=41.11  Aligned_cols=52  Identities=17%  Similarity=0.103  Sum_probs=43.4

Q ss_pred             HHHHhhHHHHHHHHHhcCCCccc-------hHHHHHHHHHHHHHhHhhHHHHHHHHHHh
Q psy16105         51 SLFSNASFIAMRAIISKLTSAEE-------LGKVMSAFMLFEAIAPMIYNPIYNAVYTA  102 (130)
Q Consensus        51 ~~~~~~~~p~~rs~iSk~v~~~e-------qG~~~~~~~~~~sl~~~i~~~l~~~iy~~  102 (130)
                      +...+...|...++.++.+|++|       .|..+|+.+..+.++..+++.+...+...
T Consensus       330 g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~  388 (448)
T PRK09848        330 SIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGL  388 (448)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33456778889999999998775       59999999999999999999988887654

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=93.92  E-value=0.29  Score=41.28  Aligned_cols=80  Identities=13%  Similarity=0.108  Sum_probs=56.7

Q ss_pred             HHHHHhhHHHHHHHHHhcCCCccchHHHHHHHHHHH-HHhHhhHHHHHHHHHHhc----------cccCCchHHHHHHHH
Q psy16105         50 ASLFSNASFIAMRAIISKLTSAEELGKVMSAFMLFE-AIAPMIYNPIYNAVYTAT----------LDFMPSTFLLMSLVL  118 (130)
Q Consensus        50 ~~~~~~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~-sl~~~i~~~l~~~iy~~t----------~~~~pg~~f~~~a~l  118 (130)
                      .+..+-+..|.-.|+++|..|++-+|+++|+--... ++++.++..+.+..-..+          .+.+++....++...
T Consensus       387 ~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~  466 (493)
T PRK15462        387 MGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQTSQASFDASGAINYSINAYIEVFDQITWGA  466 (493)
T ss_pred             HHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccccccchhhhHHHHHHHHHHHH
Confidence            444567889999999999999999999999986644 788888888777442211          122334444445444


Q ss_pred             HHH-HHHHHHhc
Q psy16105        119 TSP-ALFIFLCH  129 (130)
Q Consensus       119 ~~~-~~~l~~~~  129 (130)
                      ..+ +++++.|+
T Consensus       467 ~~~~~~~~~~~~  478 (493)
T PRK15462        467 LACVGVVLMIWL  478 (493)
T ss_pred             HHHHHHHHHHHH
Confidence            566 78888886

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=93.87  E-value=0.45  Score=39.68  Aligned_cols=51  Identities=18%  Similarity=0.090  Sum_probs=45.1

Q ss_pred             HHHHHHhhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHH
Q psy16105         49 VASLFSNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAV   99 (130)
Q Consensus        49 ~~~~~~~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~i   99 (130)
                      +.+..+.+..|.-.+.+.|.+|++++|.+.|+.....++++.++..+.+..
T Consensus       388 l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~  438 (489)
T PRK10207        388 FQSLGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFT  438 (489)
T ss_pred             HHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            445567889999999999999999999999999999999999998887744

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=93.87  E-value=0.51  Score=39.64  Aligned_cols=74  Identities=19%  Similarity=0.164  Sum_probs=53.7

Q ss_pred             HHhhHHHHHHHHHhcCCCccch--HHHHHHHHHHHHHhHhhHHHHHHHH--HHh---cccc----CC---chHHHHHHHH
Q psy16105         53 FSNASFIAMRAIISKLTSAEEL--GKVMSAFMLFEAIAPMIYNPIYNAV--YTA---TLDF----MP---STFLLMSLVL  118 (130)
Q Consensus        53 ~~~~~~p~~rs~iSk~v~~~eq--G~~~~~~~~~~sl~~~i~~~l~~~i--y~~---t~~~----~p---g~~f~~~a~l  118 (130)
                      ..+..++..|++++..+|+++|  ++.++..+...+++.++++.+....  ++.   +...    .|   -..|++++.+
T Consensus       127 ~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~  206 (477)
T TIGR01301       127 ANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIIL  206 (477)
T ss_pred             HHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHH
Confidence            4567888899999999998855  7899999999999999999988754  221   1110    11   1467887777


Q ss_pred             HHHHHHHH
Q psy16105        119 TSPALFIF  126 (130)
Q Consensus       119 ~~~~~~l~  126 (130)
                      ++.+..+-
T Consensus       207 l~i~~l~t  214 (477)
T TIGR01301       207 LAILTYIA  214 (477)
T ss_pred             HHHHHHHH
Confidence            76666554

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=93.69  E-value=2.3  Score=33.01  Aligned_cols=24  Identities=4%  Similarity=-0.117  Sum_probs=18.6

Q ss_pred             hhhhhccccchhHHHHHHHHHHHH
Q psy16105         21 YTRLAFRWNEYNYSTFYTAYYFTD   44 (130)
Q Consensus        21 y~~~~f~W~~~~~g~~~~~~~~~~   44 (130)
                      |.+++++|++++.|...+...+..
T Consensus       220 ~~~~~~g~s~~~~g~~~~~~~~~~  243 (377)
T PRK11102        220 VYIELNGVSPQNFGYYFALNIVFL  243 (377)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHH
Confidence            556789999999999887765444

>PRK15075 citrate-proton symporter; Provisional

Probab=93.57  E-value=0.49  Score=38.21  Aligned_cols=44  Identities=7%  Similarity=0.003  Sum_probs=37.7

Q ss_pred             hHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHH
Q psy16105         56 ASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAV   99 (130)
Q Consensus        56 ~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~i   99 (130)
                      ...|...+.+++.+|++|||+..+..+...+++..+++.+...+
T Consensus       133 ~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l  176 (434)
T PRK15075        133 VELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYLL  176 (434)
T ss_pred             ccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34677889999999999999999999998888888887776655

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=93.56  E-value=0.81  Score=36.90  Aligned_cols=69  Identities=12%  Similarity=0.024  Sum_probs=46.9

Q ss_pred             hhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHhc----c-ccCCchHHHHHHHHHHHHH
Q psy16105         55 NASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTAT----L-DFMPSTFLLMSLVLTSPAL  123 (130)
Q Consensus        55 ~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t----~-~~~pg~~f~~~a~l~~~~~  123 (130)
                      +...|...+.+++..|++|||+..+..+.....+.++++.+...+...-    . ++-=..+|++.+...++.+
T Consensus       139 g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~  212 (432)
T PRK10406        139 GGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVAL  212 (432)
T ss_pred             hhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHH
Confidence            4567899999999999999999999988888888888776654433210    0 1111356666666554443

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=93.47  E-value=0.88  Score=37.49  Aligned_cols=55  Identities=9%  Similarity=-0.009  Sum_probs=32.0

Q ss_pred             CCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHhccc-cCCchHHHHHHHHHHHHHHHHHh
Q psy16105         69 TSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLD-FMPSTFLLMSLVLTSPALFIFLC  128 (130)
Q Consensus        69 v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t~~-~~pg~~f~~~a~l~~~~~~l~~~  128 (130)
                      ++++++|...|.......+++.++|.    ++..+.. .+. ..|++.+++.+++.++..+
T Consensus       376 ~~~~~~g~~~g~~~~~g~lg~~i~~~----l~~~~~~~~y~-~~f~~~~~~~~i~~~~~~~  431 (476)
T PLN00028        376 VSRRSLGVISGLTGAGGNVGAVLTQL----LFFTGSSYSTE-TGISLMGVMIIACTLPVAF  431 (476)
T ss_pred             cChhhchhhhhhhhccccHHHHHHHH----HHHhcCCccHh-hHHHHHHHHHHHHHHHHHh
Confidence            34678899888886655555555554    4443221 122 3466666666666666554

>KOG2325|consensus

Probab=93.46  E-value=0.042  Score=46.28  Aligned_cols=64  Identities=19%  Similarity=0.236  Sum_probs=53.3

Q ss_pred             HHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Q psy16105         57 SFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSPAL  123 (130)
Q Consensus        57 ~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t~~~~pg~~f~~~a~l~~~~~  123 (130)
                      ..-+..++-||..+|.+||.++++.+...+.+++++|.+-+.+|..   .-|+.++.+..+..+...
T Consensus       405 ~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~---~g~~~v~~~~~~~~l~~~  468 (488)
T KOG2325|consen  405 ISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTL---SGPRPVWIILLCLLLVVA  468 (488)
T ss_pred             ccchHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHh---cCccHHHHHHHHHHHHHH
Confidence            3456889999999999999999999999999999999999999988   566666666666554433

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=93.44  E-value=0.75  Score=37.95  Aligned_cols=47  Identities=13%  Similarity=0.128  Sum_probs=41.1

Q ss_pred             HhhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHH
Q psy16105         54 SNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVY  100 (130)
Q Consensus        54 ~~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy  100 (130)
                      .+...|.....++...|+++||+..+..+....++.++++.+...+.
T Consensus       129 ~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~  175 (502)
T TIGR00887       129 IGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVL  175 (502)
T ss_pred             HhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45667889999999999999999999999999999999888876554

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR00788 fbt folate/biopterin transporter

Probab=93.09  E-value=2.7  Score=34.74  Aligned_cols=70  Identities=13%  Similarity=0.092  Sum_probs=46.7

Q ss_pred             HhhHHHHHHHHHhcCCCccchHH---HHHHHHHHHHHhHhhHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHH
Q psy16105         54 SNASFIAMRAIISKLTSAEELGK---VMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSPALFIFL  127 (130)
Q Consensus        54 ~~~~~p~~rs~iSk~v~~~eqG~---~~~~~~~~~sl~~~i~~~l~~~iy~~t~~~~pg~~f~~~a~l~~~~~~l~~  127 (130)
                      .....++..++..+..+ |||+.   +++..-...+++.++++.+...+.+.   .-+...|++.+++.++......
T Consensus       134 ~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~---~~~~~~f~~~a~l~ll~~~~~~  206 (468)
T TIGR00788       134 KALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDK---TLTRILFLITAALLLLQLFVSN  206 (468)
T ss_pred             HHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHh---cCcchHHHHHHHHHHHHHHHHH
Confidence            46677888888888887 55543   45555555667888888888877654   2355677777777655544333

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=93.01  E-value=1.2  Score=36.79  Aligned_cols=70  Identities=10%  Similarity=0.074  Sum_probs=48.4

Q ss_pred             HhhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHhc----c-c-cCCchHHHHHHHHHHHHHH
Q psy16105         54 SNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTAT----L-D-FMPSTFLLMSLVLTSPALF  124 (130)
Q Consensus        54 ~~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t----~-~-~~pg~~f~~~a~l~~~~~~  124 (130)
                      .+...|...+++++..|+++||+..+..+....++.++++.+...+...-    . + .|. .+|++++.+.+++++
T Consensus       132 ~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR-~~f~i~~~~~l~~~~  207 (490)
T PRK10642        132 VGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWR-IPFFIALPLGIIGLY  207 (490)
T ss_pred             hHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHH-HHHHHHHHHHHHHHH
Confidence            45667888999999999999999999998888888888877665543311    1 1 143 456665544444433

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=92.84  E-value=3.8  Score=32.19  Aligned_cols=27  Identities=4%  Similarity=-0.042  Sum_probs=19.9

Q ss_pred             HHhhhhhccccchhHHHHHHHHHHHHH
Q psy16105         19 YLYTRLAFRWNEYNYSTFYTAYYFTDF   45 (130)
Q Consensus        19 ~ly~~~~f~W~~~~~g~~~~~~~~~~~   45 (130)
                      ..|.++.++++++++|...+..++..+
T Consensus       227 ~~~~~~~~g~~~~~~~~~~~~~~~~~i  253 (392)
T PRK10473        227 PVLLMEQMGFSRGEYAIIMALTAGVSM  253 (392)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence            346677899999999988776654443

>PRK09952 shikimate transporter; Provisional

Probab=92.64  E-value=1.3  Score=35.94  Aligned_cols=66  Identities=9%  Similarity=0.053  Sum_probs=47.7

Q ss_pred             hhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHhcc-----cc-CCchHHHHHHHHHHH
Q psy16105         55 NASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATL-----DF-MPSTFLLMSLVLTSP  121 (130)
Q Consensus        55 ~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t~-----~~-~pg~~f~~~a~l~~~  121 (130)
                      +...|+..+.+++..|++|||+..+..+....++.++++++...+.+.--     ++ | ..+|++.+...+.
T Consensus       140 g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gW-r~~f~~~~~~~l~  211 (438)
T PRK09952        140 GGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGW-RIPFLFSIVLVLI  211 (438)
T ss_pred             cccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccCh-HHHHHHHHHHHHH
Confidence            44567888999999999999999999999999999998887766543210     11 3 2466666655433

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=91.51  E-value=4.5  Score=35.36  Aligned_cols=118  Identities=17%  Similarity=0.213  Sum_probs=74.0

Q ss_pred             cccchhHHHHHhhhhhccccchhHHHHHHHH----HHHHH----------------------------------------
Q psy16105         10 PYQGEFTVMYLYTRLAFRWNEYNYSTFYTAY----YFTDF----------------------------------------   45 (130)
Q Consensus        10 ~~~g~~~i~~ly~~~~f~W~~~~~g~~~~~~----~~~~~----------------------------------------   45 (130)
                      .+-|+..++.+|..+.++|++++........    .+..+                                        
T Consensus         2 syYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~   81 (654)
T TIGR00926         2 SYYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGH   81 (654)
T ss_pred             ceeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCccccc
Confidence            3557889999999999999988755443221    11111                                        


Q ss_pred             --------HHH-HHHHHHhhHHHHHHHHHhcCCCccc---hHHHHHHHHHHHHHhHhhHHHHHHHHHHhcc--ccCC--c
Q psy16105         46 --------LGA-VASLFSNASFIAMRAIISKLTSAEE---LGKVMSAFMLFEAIAPMIYNPIYNAVYTATL--DFMP--S  109 (130)
Q Consensus        46 --------~~~-~~~~~~~~~~p~~rs~iSk~v~~~e---qG~~~~~~~~~~sl~~~i~~~l~~~iy~~t~--~~~p--g  109 (130)
                              .+. .+....+...|++.+...++.+++|   +-+.|...-...+++.++++++...+-..--  +-.+  .
T Consensus        82 ~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~  161 (654)
T TIGR00926        82 PLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYP  161 (654)
T ss_pred             chHHHHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchH
Confidence                    001 1112236678899999999887654   5567777777888899998888877643210  0012  2


Q ss_pred             hHHHHHHHHHHHHHHHHH
Q psy16105        110 TFLLMSLVLTSPALFIFL  127 (130)
Q Consensus       110 ~~f~~~a~l~~~~~~l~~  127 (130)
                      ..|.+.+++.+++++++.
T Consensus       162 ~aF~i~~i~m~ia~lvf~  179 (654)
T TIGR00926       162 LAFGVPAILMILALIVFM  179 (654)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            456666666666666654

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=91.28  E-value=0.79  Score=36.66  Aligned_cols=46  Identities=13%  Similarity=0.057  Sum_probs=41.1

Q ss_pred             hhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHH
Q psy16105         55 NASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVY  100 (130)
Q Consensus        55 ~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy  100 (130)
                      ....|...++.++..|+|++|...|.......++.+++|++...+.
T Consensus       295 ~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~  340 (368)
T TIGR00903       295 LPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFI  340 (368)
T ss_pred             hhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHh
Confidence            3455778899999999999999999999999999999999988776

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00889 2A0110 nucleoside transporter

Probab=91.08  E-value=4.5  Score=32.71  Aligned_cols=31  Identities=6%  Similarity=0.134  Sum_probs=24.7

Q ss_pred             hHHHHHhhhhhccccchhHHHHHHHHHHHHH
Q psy16105         15 FTVMYLYTRLAFRWNEYNYSTFYTAYYFTDF   45 (130)
Q Consensus        15 ~~i~~ly~~~~f~W~~~~~g~~~~~~~~~~~   45 (130)
                      ...+..|.++++|.+..|+|+..+...+..+
T Consensus        22 ~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~   52 (418)
T TIGR00889        22 LVTLGSYMSKTLHFSGAEIGWVYSSTGIAAI   52 (418)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            4556777888999999999999888766554

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=91.01  E-value=1.7  Score=36.43  Aligned_cols=55  Identities=9%  Similarity=0.085  Sum_probs=47.2

Q ss_pred             chHHHHHHHHHHHHHhHhhHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHhc
Q psy16105         73 ELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSPALFIFLCH  129 (130)
Q Consensus        73 eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t~~~~pg~~f~~~a~l~~~~~~l~~~~  129 (130)
                      |-|.+-|..+...++++++-|+++...+..+=  -+...|+...+.+..|+++-+|.
T Consensus       399 ~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g--~~~~~~~~~~~~~~~~~~~~w~~  453 (462)
T PRK15034        399 ETAAALGFISAIGAVGGFFIPQAFGMSLNMTG--SPVGAMKVFLIFYIVCVLLTWLV  453 (462)
T ss_pred             HHHHHHHHHHHHHHcccchhhHHHHHHHHHcC--CcHHHHHHHHHHHHHHHHHHHHH
Confidence            78999999999999999999999999988753  36677888888899998888874

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=90.70  E-value=1.2  Score=37.05  Aligned_cols=44  Identities=18%  Similarity=0.074  Sum_probs=31.5

Q ss_pred             hhHHHHHHHHHhcCCCccchHHHHHHHHHHHH----HhHhhHHHHHHHH
Q psy16105         55 NASFIAMRAIISKLTSAEELGKVMSAFMLFEA----IAPMIYNPIYNAV   99 (130)
Q Consensus        55 ~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~s----l~~~i~~~l~~~i   99 (130)
                      |-....-...+|+..|||+||...|+.+ ..+    +..+++|++....
T Consensus       119 GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~  166 (417)
T COG2223         119 GASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAF  166 (417)
T ss_pred             cceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHH
Confidence            3344455578899999999999999999 665    4555556555443

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=90.45  E-value=8  Score=31.10  Aligned_cols=62  Identities=8%  Similarity=0.001  Sum_probs=41.3

Q ss_pred             hhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHhccccCCchHHHHHHHHHHH
Q psy16105         55 NASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSP  121 (130)
Q Consensus        55 ~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t~~~~pg~~f~~~a~l~~~  121 (130)
                      +...|...+.. ..-++++.|+..|..+.++....-.++.+...++..    ....+|...+++...
T Consensus       327 ~~~~p~~~~~a-l~~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~----~~~~~~~~~~~~~~~  388 (413)
T PRK15403        327 GLIFPTLFRFT-LFSNNLPKGTVSASLNMVILMVMAVSVEIGRWLWFN----GGRLPFHLLAVVAGV  388 (413)
T ss_pred             HHHhHHHHHHH-hccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHc----CCchHHHHHHHHHHH
Confidence            45566666422 222344579999999998888888888888888766    345666665555433

>KOG2615|consensus

Probab=90.18  E-value=0.32  Score=40.36  Aligned_cols=43  Identities=21%  Similarity=0.019  Sum_probs=39.1

Q ss_pred             HHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHH
Q psy16105         59 IAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYT  101 (130)
Q Consensus        59 p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~  101 (130)
                      -.+|+++|..+++++|++.++.++..-+++-++||.+..++=.
T Consensus       139 ~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~  181 (451)
T KOG2615|consen  139 SVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ  181 (451)
T ss_pred             HHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence            4578999999999999999999999999999999999987643

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=90.13  E-value=2.2  Score=35.33  Aligned_cols=49  Identities=12%  Similarity=0.227  Sum_probs=43.4

Q ss_pred             HhhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHh
Q psy16105         54 SNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTA  102 (130)
Q Consensus        54 ~~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~  102 (130)
                      -+..+.+.-+++++.+|||||+|+-++.-++.-++-+++..+++.+.+.
T Consensus       103 ~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~  151 (403)
T PF03209_consen  103 VHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDP  151 (403)
T ss_pred             HhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccc
Confidence            4677888999999999999999999999999999999988888877654

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=89.28  E-value=1.5  Score=36.18  Aligned_cols=67  Identities=3%  Similarity=-0.130  Sum_probs=48.5

Q ss_pred             HHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHhccc-------cCCchHHHHHHHHHHHHHHH
Q psy16105         59 IAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLD-------FMPSTFLLMSLVLTSPALFI  125 (130)
Q Consensus        59 p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t~~-------~~pg~~f~~~a~l~~~~~~l  125 (130)
                      |......+...|++.||+.+|....+..++.+++|.++..+++.+-.       .....+|++.++..+.+.+.
T Consensus       411 ~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~  484 (502)
T TIGR00887       411 ATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILF  484 (502)
T ss_pred             chhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHH
Confidence            44455668889999999999999999999999999999988874311       11234566666665555443

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=89.04  E-value=6.4  Score=30.34  Aligned_cols=42  Identities=17%  Similarity=0.318  Sum_probs=31.9

Q ss_pred             HHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHh
Q psy16105         59 IAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTA  102 (130)
Q Consensus        59 p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~  102 (130)
                      .++.+-+. .- |++||++-|+.-....++.-+-.-+++.+|+.
T Consensus       116 a~lvt~~~-NF-P~~RG~vvgilk~~~GLSaai~t~i~~~~f~~  157 (250)
T PF06813_consen  116 ASLVTCVR-NF-PRSRGTVVGILKGFFGLSAAIFTQIYSAFFGD  157 (250)
T ss_pred             HHHHHHHH-hC-ccccCceehhhhHHHHhHHHHHHHHHHHHcCC
Confidence            33444443 44 46899999999999999988888888888776

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=89.03  E-value=0.95  Score=34.93  Aligned_cols=33  Identities=6%  Similarity=0.092  Sum_probs=24.9

Q ss_pred             chhHHHHHhhhhhccccchhHHHHHHHHHHHHH
Q psy16105         13 GEFTVMYLYTRLAFRWNEYNYSTFYTAYYFTDF   45 (130)
Q Consensus        13 g~~~i~~ly~~~~f~W~~~~~g~~~~~~~~~~~   45 (130)
                      +.......|.++.+++++.+.|.+.+...+..+
T Consensus       243 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  275 (366)
T TIGR00886       243 GVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGS  275 (366)
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence            445566778899999999999988776655443

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=89.00  E-value=11  Score=30.67  Aligned_cols=60  Identities=17%  Similarity=0.123  Sum_probs=46.0

Q ss_pred             cCCCccchHHHHHHHH-HHHHHhHhhHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHH
Q psy16105         67 KLTSAEELGKVMSAFM-LFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSPALFIFL  127 (130)
Q Consensus        67 k~v~~~eqG~~~~~~~-~~~sl~~~i~~~l~~~iy~~t~~~~pg~~f~~~a~l~~~~~~l~~  127 (130)
                      +-.|+|..+..|+... ..+++..+.+.++.|.+-+. .++.|-.||..+..+..++.++..
T Consensus       153 ~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~-~~~g~vaPF~~a~~~l~~~~~~I~  213 (354)
T PF05631_consen  153 RGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADW-FGFGPVAPFDAAIVLLAVAAVLIL  213 (354)
T ss_pred             cCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHH-hCCCCcchHHHHHHHHHHHHHHHH
Confidence            4567888999999888 56778889999988865443 344688999999999877666543

>PRK10133 L-fucose transporter; Provisional

Probab=88.89  E-value=11  Score=30.64  Aligned_cols=83  Identities=14%  Similarity=0.065  Sum_probs=58.1

Q ss_pred             HHHhh-hhhccccchhHHHHHHHHHHHHH-------------------------------------------HHHHHHHH
Q psy16105         18 MYLYT-RLAFRWNEYNYSTFYTAYYFTDF-------------------------------------------LGAVASLF   53 (130)
Q Consensus        18 ~~ly~-~~~f~W~~~~~g~~~~~~~~~~~-------------------------------------------~~~~~~~~   53 (130)
                      ...|. ++.++.++.+.|+..+...+..+                                           .....+.+
T Consensus       281 ~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~glg  360 (438)
T PRK10133        281 LIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIALTLCSAF  360 (438)
T ss_pred             HHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence            34454 45789999999988777654433                                           00123445


Q ss_pred             HhhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHh
Q psy16105         54 SNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTA  102 (130)
Q Consensus        54 ~~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~  102 (130)
                      .+...|.+.+..-|..|+ +.|..-++.. +...+..+.|++...+.+.
T Consensus       361 ~~~i~P~~~s~a~~~~~~-~~~~as~l~~-~~~~g~~~~~~i~G~l~~~  407 (438)
T PRK10133        361 MSIQYPTIFSLGIKNLGQ-DTKYGSSFIV-MTIIGGGIVTPVMGFVSDA  407 (438)
T ss_pred             HHHHHHHHHHHHHcccch-hhccchhHHh-HHhccchHHHHHHHHHHHh
Confidence            678899999999998765 5677766664 5667788888888877664

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=88.70  E-value=6.8  Score=32.63  Aligned_cols=73  Identities=11%  Similarity=-0.004  Sum_probs=58.3

Q ss_pred             HHhhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHh----cc-----------c-cCCchHHHHHH
Q psy16105         53 FSNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTA----TL-----------D-FMPSTFLLMSL  116 (130)
Q Consensus        53 ~~~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~----t~-----------~-~~pg~~f~~~a  116 (130)
                      .-++.+.+-+..++.+-|+++-.+-....+...+++.+++|++.+.+-.+    +.           + -.+..||...+
T Consensus       117 Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~pYl~~~  196 (422)
T COG0738         117 GIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGADASSVQFPYLILA  196 (422)
T ss_pred             hhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhHHHHHH
Confidence            34677888899999999999999999999999999999999999988662    11           1 15678899888


Q ss_pred             HHHHHHHHH
Q psy16105        117 VLTSPALFI  125 (130)
Q Consensus       117 ~l~~~~~~l  125 (130)
                      ...+...++
T Consensus       197 ~~lvll~v~  205 (422)
T COG0738         197 GLLVLLAVL  205 (422)
T ss_pred             HHHHHHHHH
Confidence            887555544

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=88.63  E-value=3.7  Score=32.98  Aligned_cols=37  Identities=8%  Similarity=0.007  Sum_probs=33.0

Q ss_pred             hcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHh
Q psy16105         66 SKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTA  102 (130)
Q Consensus        66 Sk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~  102 (130)
                      ....|++++|+..|.......++..++|.+...+.+.
T Consensus       359 ~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~  395 (412)
T TIGR02332       359 DQSISLQARAIAIAVINATGNIGSALSPFLIGILKDA  395 (412)
T ss_pred             ccccchHHHHHHHHHHHHhhhhhhhhhhhhccccccc
Confidence            4567899999999999999999999999998888765

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=88.24  E-value=1.9  Score=35.85  Aligned_cols=87  Identities=14%  Similarity=0.163  Sum_probs=65.4

Q ss_pred             hhHHHHHhhhhhccccchhHHHHHHHHHHHHH-------------------------------------------HHHHH
Q psy16105         14 EFTVMYLYTRLAFRWNEYNYSTFYTAYYFTDF-------------------------------------------LGAVA   50 (130)
Q Consensus        14 ~~~i~~ly~~~~f~W~~~~~g~~~~~~~~~~~-------------------------------------------~~~~~   50 (130)
                      ..+-+..|..+.-+-|+++.+++.++.....+                                           ....+
T Consensus       255 ~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~~g~v~~~~l~~i  334 (422)
T COG0738         255 IGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALIGGVVALYALFLI  334 (422)
T ss_pred             HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHH
Confidence            34555666666677788887777766543332                                           44567


Q ss_pred             HHHHhhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHh
Q psy16105         51 SLFSNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTA  102 (130)
Q Consensus        51 ~~~~~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~  102 (130)
                      +.+.+...|++.++..+..|  |+.+.-|..-++..+++-+-|++...+=+.
T Consensus       335 g~F~simfPTIfslal~~l~--~~ts~~s~~l~maivGGAiiP~l~G~i~d~  384 (422)
T COG0738         335 GLFNSIMFPTIFSLALKNLG--EHTSVGSGLLVMAIVGGAIIPPLQGVIADM  384 (422)
T ss_pred             HHHhHHHHHHHHHHHHhccC--ccccccceeeeeheecchHHHHHHHHHHHh
Confidence            77889999999999999998  667777777777888888889998888654

>PRK10429 melibiose:sodium symporter; Provisional

Probab=88.18  E-value=13  Score=30.45  Aligned_cols=43  Identities=14%  Similarity=0.169  Sum_probs=31.5

Q ss_pred             hhHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHhHhhHHHHHH
Q psy16105         55 NASFIAMRAIISKLT-SAEELGKVMSAFMLFEAIAPMIYNPIYN   97 (130)
Q Consensus        55 ~~~~p~~rs~iSk~v-~~~eqG~~~~~~~~~~sl~~~i~~~l~~   97 (130)
                      .+..+..+|+.+.+. +++||.++.+.-....+++.++.+.+..
T Consensus       121 t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~  164 (473)
T PRK10429        121 TIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTL  164 (473)
T ss_pred             HHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345556778888888 7999999999877777777666554443

>KOG2532|consensus

Probab=86.83  E-value=1.8  Score=36.26  Aligned_cols=57  Identities=21%  Similarity=0.227  Sum_probs=45.3

Q ss_pred             CccchHHHHHHHHHHHHHhHhhHHHHHHHHHHh-ccccCCchHHHHHHHHHHHHHHHHH
Q psy16105         70 SAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTA-TLDFMPSTFLLMSLVLTSPALFIFL  127 (130)
Q Consensus        70 ~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~-t~~~~pg~~f~~~a~l~~~~~~l~~  127 (130)
                      .|++-|-+.|+.+.+.+++++++|.+.+.+-+. +.+-| ..+|++.+++.+..-+++.
T Consensus       387 apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW-~~VF~i~a~i~~~~~i~f~  444 (466)
T KOG2532|consen  387 APQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEW-RIVFLIAAGILIVGNIIFL  444 (466)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHH-HHHHHHHHHHHHHhchhee
Confidence            688999999999999999999999999988743 33335 4678888888877665554

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=86.81  E-value=8.5  Score=31.79  Aligned_cols=83  Identities=7%  Similarity=-0.006  Sum_probs=62.8

Q ss_pred             hccccchhHHHHHHHHHHHHH--------------------------------------------HHHHHHHHHhhHHHH
Q psy16105         25 AFRWNEYNYSTFYTAYYFTDF--------------------------------------------LGAVASLFSNASFIA   60 (130)
Q Consensus        25 ~f~W~~~~~g~~~~~~~~~~~--------------------------------------------~~~~~~~~~~~~~p~   60 (130)
                      .-|||+++.|...+..++..+                                            -+..++...+...|.
T Consensus       237 ~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~lw~~llG~G~G~~F~l  316 (395)
T COG2807         237 DRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLPILWALLLGLGQGGAFPL  316 (395)
T ss_pred             HcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhCccchHHHH
Confidence            458999999998888777665                                            112333344666666


Q ss_pred             HHHHHh-cCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHhccccC
Q psy16105         61 MRAIIS-KLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFM  107 (130)
Q Consensus        61 ~rs~iS-k~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t~~~~  107 (130)
                      --.++. |..+++|-+++-|..|...-+-.-.+|.++..+++.+=++-
T Consensus       317 aL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~  364 (395)
T COG2807         317 ALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWS  364 (395)
T ss_pred             HHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChH
Confidence            656555 44578889999999999999889999999999999986663

>PRK09669 putative symporter YagG; Provisional

Probab=86.32  E-value=3.5  Score=33.34  Aligned_cols=53  Identities=15%  Similarity=0.105  Sum_probs=42.9

Q ss_pred             HHHHHhhHHHHHHHHHhcCCCccc-------hHHHHHHHHHHHHHhHhhHHHHHHHHHHh
Q psy16105         50 ASLFSNASFIAMRAIISKLTSAEE-------LGKVMSAFMLFEAIAPMIYNPIYNAVYTA  102 (130)
Q Consensus        50 ~~~~~~~~~p~~rs~iSk~v~~~e-------qG~~~~~~~~~~sl~~~i~~~l~~~iy~~  102 (130)
                      .+...+...|...+++++.+|.||       -|..+|..+..+.++..+++.+...+++.
T Consensus       329 ~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~  388 (444)
T PRK09669        329 FNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAW  388 (444)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444567788999999999997444       46688999999999999999988888765

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=86.31  E-value=18  Score=30.04  Aligned_cols=82  Identities=20%  Similarity=0.111  Sum_probs=63.0

Q ss_pred             HHHHHHHhhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHhccccC-------CchHHHHHHHHHH
Q psy16105         48 AVASLFSNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFM-------PSTFLLMSLVLTS  120 (130)
Q Consensus        48 ~~~~~~~~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t~~~~-------pg~~f~~~a~l~~  120 (130)
                      ..++..+|+...+.-+.+=.+.++++.|...|+=+..|+++.-++..+...+-+......       -+.+|.+-+.+++
T Consensus       309 ~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~  388 (403)
T PF03209_consen  309 FLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLL  388 (403)
T ss_pred             HHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHH
Confidence            445556677777777788888899999999999999999988888888887766543332       2578888888888


Q ss_pred             HHHHHHHhc
Q psy16105        121 PALFIFLCH  129 (130)
Q Consensus       121 ~~~~l~~~~  129 (130)
                      .+++++..+
T Consensus       389 ~a~~ll~~l  397 (403)
T PF03209_consen  389 AALVLLGRL  397 (403)
T ss_pred             HHHHHHHHh
Confidence            888776543

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PRK10429 melibiose:sodium symporter; Provisional

Probab=83.94  E-value=6.5  Score=32.25  Aligned_cols=51  Identities=10%  Similarity=0.028  Sum_probs=40.1

Q ss_pred             HHHhhHHHHHHHHHhcCCCccc--hHH-----HHHHHHHHHHHhHhhHHHHHHHHHHh
Q psy16105         52 LFSNASFIAMRAIISKLTSAEE--LGK-----VMSAFMLFEAIAPMIYNPIYNAVYTA  102 (130)
Q Consensus        52 ~~~~~~~p~~rs~iSk~v~~~e--qG~-----~~~~~~~~~sl~~~i~~~l~~~iy~~  102 (130)
                      ...+...+...++++..+|.+|  .|+     .+|..+..+-++.-+++.+...+++.
T Consensus       336 ~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~  393 (473)
T PRK10429        336 IGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGL  393 (473)
T ss_pred             HHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3345677788889999988443  555     99999999999999998888887754

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=81.20  E-value=27  Score=28.96  Aligned_cols=66  Identities=14%  Similarity=0.088  Sum_probs=49.7

Q ss_pred             HHHHHHHhcCCCccchHHHHHHH-HHHHHHhHhhHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHH
Q psy16105         59 IAMRAIISKLTSAEELGKVMSAF-MLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSPALFIFL  127 (130)
Q Consensus        59 p~~rs~iSk~v~~~eqG~~~~~~-~~~~sl~~~i~~~l~~~iy~~t~~~~pg~~f~~~a~l~~~~~~l~~  127 (130)
                      .+.-=.+++..|++-...++.+. +....++..+.+++...+|+.   .-..-.|++++++.++..++-.
T Consensus       331 va~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~---~G~~~tylimg~iv~~~~li~~  397 (412)
T PF01306_consen  331 VAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDR---IGFQHTYLIMGLIVLPFTLISA  397 (412)
T ss_dssp             HHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhh---cCcHHHHHHHHHHHHHHHHHhe
Confidence            34445678889999889999885 688889999999999999987   2223478888888777666543

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>KOG1330|consensus

Probab=80.95  E-value=0.63  Score=39.28  Aligned_cols=76  Identities=11%  Similarity=0.004  Sum_probs=56.2

Q ss_pred             HHHHhhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHh
Q psy16105         51 SLFSNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSPALFIFLC  128 (130)
Q Consensus        51 ~~~~~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t~~~~pg~~f~~~a~l~~~~~~l~~~  128 (130)
                      +.......|..+++++...|+++||++++.......++..++-++...+=+.+=+ | ...|.+.+.+.+++.++..|
T Consensus       132 GiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~-W-r~af~~~avl~vi~~~L~~~  207 (493)
T KOG1330|consen  132 GIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFW-W-RWAFRGSAVLGVIVGLLVFL  207 (493)
T ss_pred             ccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccc-e-EEEEEeehHHHHHHHHHHHh
Confidence            4445778999999999999999999999999998888877776666554333221 2 34567777777766666554

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=80.35  E-value=31  Score=28.31  Aligned_cols=78  Identities=14%  Similarity=0.226  Sum_probs=55.2

Q ss_pred             HHHHhhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHh---ccccCCchHHHH--HHHHHHHHHHH
Q psy16105         51 SLFSNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTA---TLDFMPSTFLLM--SLVLTSPALFI  125 (130)
Q Consensus        51 ~~~~~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~---t~~~~pg~~f~~--~a~l~~~~~~l  125 (130)
                      ...+.+..=..--+++|+.|+..-|.+|+++.+..+++..++..+.+.+.+.   |-+.|-+++.++  ..++.++.+.+
T Consensus       329 ~~~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~ll~l~l  408 (433)
T PF03092_consen  329 EVIGMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQLLPLPL  408 (433)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHH
Confidence            3344444334447899999999999999999999999999999998877554   334477766655  44444555554


Q ss_pred             HHh
Q psy16105        126 FLC  128 (130)
Q Consensus       126 ~~~  128 (130)
                      ..+
T Consensus       409 l~l  411 (433)
T PF03092_consen  409 LFL  411 (433)
T ss_pred             HHH
Confidence            434

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	130
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	98.38
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	98.15
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	98.08
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	97.81
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	97.73
2xut_A	524	Proton/peptide symporter family protein; transport	97.7
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	97.56
2cfq_A	417	Lactose permease; transport, transport mechanism,	96.88
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	96.62
2xut_A	524	Proton/peptide symporter family protein; transport	96.45
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	96.43
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	95.15
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	89.03
2cfq_A	417	Lactose permease; transport, transport mechanism,	87.96

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=98.38  E-value=1.4e-05  Score=62.07  Aligned_cols=113  Identities=11%  Similarity=0.042  Sum_probs=84.9

Q ss_pred             chhHHHHHhhhhhccccchhHHHHHHHHHHHHH-----------------------------------------------
Q psy16105         13 GEFTVMYLYTRLAFRWNEYNYSTFYTAYYFTDF-----------------------------------------------   45 (130)
Q Consensus        13 g~~~i~~ly~~~~f~W~~~~~g~~~~~~~~~~~-----------------------------------------------   45 (130)
                      +.......|.++.+++++.+.|...+..++..+                                               
T Consensus       270 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (451)
T 1pw4_A          270 GILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVD  349 (451)
T ss_dssp             HHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHH
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHH
Confidence            445566677788899999998888776654333                                               


Q ss_pred             --HHHHHHHHHhhHHHHHHHHHhcCCCccchHHHHHHHHHHHHH-hHhhHHHHHHHHHHhccccCCchHHHHHHHHHHHH
Q psy16105         46 --LGAVASLFSNASFIAMRAIISKLTSAEELGKVMSAFMLFEAI-APMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSPA  122 (130)
Q Consensus        46 --~~~~~~~~~~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl-~~~i~~~l~~~iy~~t~~~~pg~~f~~~a~l~~~~  122 (130)
                        .....+...+...|...+++++.+|++++|+.+|.......+ +..++|.+...+++..   -....|++.+++.+++
T Consensus       350 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~---g~~~~~~~~~~~~~~~  426 (451)
T 1pw4_A          350 MICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF---GWDGGFMVMIGGSILA  426 (451)
T ss_dssp             HHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS---CSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CcHHHHHHHHHHHHHH
Confidence              111222234566788889999999999999999999999999 9999999999998862   3556788877777766


Q ss_pred             HHHHHh
Q psy16105        123 LFIFLC  128 (130)
Q Consensus       123 ~~l~~~  128 (130)
                      .++..+
T Consensus       427 ~~~~~~  432 (451)
T 1pw4_A          427 VILLIV  432 (451)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            665554

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=98.15  E-value=7.9e-05  Score=58.78  Aligned_cols=113  Identities=10%  Similarity=0.065  Sum_probs=84.7

Q ss_pred             cchhHHHHHhhhhh-----ccccchhHHHHHHHHHHHHH-----------------------------------------
Q psy16105         12 QGEFTVMYLYTRLA-----FRWNEYNYSTFYTAYYFTDF-----------------------------------------   45 (130)
Q Consensus        12 ~g~~~i~~ly~~~~-----f~W~~~~~g~~~~~~~~~~~-----------------------------------------   45 (130)
                      .+....+..|.+++     +++++.+.|...+...+...                                         
T Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~  109 (491)
T 4aps_A           30 YGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGAS  109 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTT
T ss_pred             HHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHH
Confidence            34456777888888     99999999999877654443                                         


Q ss_pred             ----HHHHHHHHHhhHHHHHHHHHhcCCCccc--hHHHHHHHHHHHHHhHhhHHHHHHHHHHhccccCCchHHHHHHHHH
Q psy16105         46 ----LGAVASLFSNASFIAMRAIISKLTSAEE--LGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLT  119 (130)
Q Consensus        46 ----~~~~~~~~~~~~~p~~rs~iSk~v~~~e--qG~~~~~~~~~~sl~~~i~~~l~~~iy~~t~~~~pg~~f~~~a~l~  119 (130)
                          .-.+.+...+...|+..+++++..|++|  +|+.++..+...+++..++|++...+.+.   .-...+|++.+...
T Consensus       110 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~---~g~~~~f~~~~~~~  186 (491)
T 4aps_A          110 ALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEA---AGYHVAFSLAAIGM  186 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---SCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHH
Confidence                1123344567789999999999999999  88899999999999999999999988764   11245666766666


Q ss_pred             HHHHHHHH
Q psy16105        120 SPALFIFL  127 (130)
Q Consensus       120 ~~~~~l~~  127 (130)
                      ++++++..
T Consensus       187 ~~~~~~~~  194 (491)
T 4aps_A          187 FIGLLVYY  194 (491)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            55555443

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=98.08  E-value=0.0001  Score=57.03  Aligned_cols=86  Identities=12%  Similarity=0.095  Sum_probs=69.2

Q ss_pred             HHHHhhhhhccccchhHHHHHHHHHHHHH-----------------------------------------------HHHH
Q psy16105         17 VMYLYTRLAFRWNEYNYSTFYTAYYFTDF-----------------------------------------------LGAV   49 (130)
Q Consensus        17 i~~ly~~~~f~W~~~~~g~~~~~~~~~~~-----------------------------------------------~~~~   49 (130)
                      ...-+.++.+++++.+.|+..+...+...                                               .-.+
T Consensus        47 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l  126 (438)
T 3o7q_A           47 ILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFI  126 (438)
T ss_dssp             HHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHH
Confidence            33445677899999999999888765544                                               1122


Q ss_pred             HHHHHhhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHh
Q psy16105         50 ASLFSNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTA  102 (130)
Q Consensus        50 ~~~~~~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~  102 (130)
                      .+...+...|+..+++++..|++|+|+..+..+...+++.+++|++...+...
T Consensus       127 ~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~  179 (438)
T 3o7q_A          127 IAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILS  179 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHT
T ss_pred             HHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            33345778899999999999999999999999999999999999999988733

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=97.81  E-value=0.00039  Score=53.75  Aligned_cols=70  Identities=10%  Similarity=0.006  Sum_probs=53.9

Q ss_pred             HhhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHH
Q psy16105         54 SNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSPALFI  125 (130)
Q Consensus        54 ~~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t~~~~pg~~f~~~a~l~~~~~~l  125 (130)
                      .+...|+..+++++..|++|||+.+|..+...+++.+++|++...+.+.. +.|. .+|++.+.+.++..++
T Consensus       133 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-g~w~-~~f~~~~~~~~~~~~~  202 (451)
T 1pw4_A          133 QGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWF-NDWH-AALYMPAFCAILVALF  202 (451)
T ss_dssp             HHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHT-CCST-TCTHHHHHHHHHHHHH
T ss_pred             hhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHH-HHHHHHHHHHHHHHHH
Confidence            46678999999999999999999999999999999999999998877542 1132 3456655555444333

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=97.73  E-value=0.0001  Score=56.08  Aligned_cols=99  Identities=16%  Similarity=0.081  Sum_probs=74.0

Q ss_pred             hhhhccccchhHHHHHHHHHHHHH--------------------------------------------HHHHHHHHHhhH
Q psy16105         22 TRLAFRWNEYNYSTFYTAYYFTDF--------------------------------------------LGAVASLFSNAS   57 (130)
Q Consensus        22 ~~~~f~W~~~~~g~~~~~~~~~~~--------------------------------------------~~~~~~~~~~~~   57 (130)
                      .++++++++.+.|+..+...+...                                            .....+...+..
T Consensus        26 ~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~  105 (375)
T 2gfp_A           26 MARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVG  105 (375)
T ss_dssp             HHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhh
Confidence            366899999999999888765554                                            112233445678


Q ss_pred             HHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Q psy16105         58 FIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSPAL  123 (130)
Q Consensus        58 ~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t~~~~pg~~f~~~a~l~~~~~  123 (130)
                      .|..++.+++..|++|+|+.++..+...+++..++|++...+.+..  .| ..+|++.+.+.++..
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~--~~-~~~~~~~~~~~~~~~  168 (375)
T 2gfp_A          106 GVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMW--NW-RACYLFLLVLCAGVT  168 (375)
T ss_dssp             HHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHH--HH-HHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhc--cH-HHHHHHHHHHHHHHH
Confidence            8999999999999999999999999999999999999988775431  12 345666555554443

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=97.70  E-value=0.00049  Score=54.75  Aligned_cols=111  Identities=10%  Similarity=0.031  Sum_probs=79.0

Q ss_pred             chhHHHHHhhhhhcc------ccchhHHHHHHHHHHHHH-----------------------------------------
Q psy16105         13 GEFTVMYLYTRLAFR------WNEYNYSTFYTAYYFTDF-----------------------------------------   45 (130)
Q Consensus        13 g~~~i~~ly~~~~f~------W~~~~~g~~~~~~~~~~~-----------------------------------------   45 (130)
                      +.......|.++.++      +++.+.|...+...+...                                         
T Consensus        30 ~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~  109 (524)
T 2xut_A           30 GMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSV  109 (524)
T ss_dssp             HHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCH
T ss_pred             HHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccH
Confidence            345666778888889      999999998877654443                                         


Q ss_pred             -----HHHHHHHHHhhHHHHHHHHHhcCCCccchHHHHHH---HHHHHHHhHhhHHHHHHHHHHhccccCCchHHHHHHH
Q psy16105         46 -----LGAVASLFSNASFIAMRAIISKLTSAEELGKVMSA---FMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLV  117 (130)
Q Consensus        46 -----~~~~~~~~~~~~~p~~rs~iSk~v~~~eqG~~~~~---~~~~~sl~~~i~~~l~~~iy~~t~~~~pg~~f~~~a~  117 (130)
                           .-.+.+...+...|+..+++++.+|++|+|+..+.   .....+++..++|++...+.+.   .-...+|++.+.
T Consensus       110 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~---~g~~~~f~~~~~  186 (524)
T 2xut_A          110 QGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKN---FGAAVAFGIPGV  186 (524)
T ss_dssp             HHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHT---SCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---ccHHHHHHHHHH
Confidence                 01122333466789999999999999999876555   8888899999999988887753   112356777666


Q ss_pred             HHHHHHHHH
Q psy16105        118 LTSPALFIF  126 (130)
Q Consensus       118 l~~~~~~l~  126 (130)
                      +.+.+.++.
T Consensus       187 ~~~~~~~~~  195 (524)
T 2xut_A          187 LMFVATVFF  195 (524)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            665555444

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=97.56  E-value=0.0016  Score=50.22  Aligned_cols=107  Identities=13%  Similarity=0.047  Sum_probs=75.7

Q ss_pred             chhHHHHHh-hhhhccccchhHHHHHHHHHHHHH-------------------------------------------HHH
Q psy16105         13 GEFTVMYLY-TRLAFRWNEYNYSTFYTAYYFTDF-------------------------------------------LGA   48 (130)
Q Consensus        13 g~~~i~~ly-~~~~f~W~~~~~g~~~~~~~~~~~-------------------------------------------~~~   48 (130)
                      +.......| .++++++++.+.|...+...+..+                                           ...
T Consensus       276 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (438)
T 3o7q_A          276 ACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIALT  355 (438)
T ss_dssp             HHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred             HHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence            344566677 888999999999999887655443                                           123


Q ss_pred             HHHHHHhhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Q psy16105         49 VASLFSNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSPAL  123 (130)
Q Consensus        49 ~~~~~~~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t~~~~pg~~f~~~a~l~~~~~  123 (130)
                      ..+.+.+...|...+...+..|++ +++..+... ...++..++|++...+++.+-+  ....|++.+.+.+..+
T Consensus       356 ~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~--~~~~~~~~~~~~~~~~  426 (438)
T 3o7q_A          356 LCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGN--IPTAELIPALCFAVIF  426 (438)
T ss_dssp             HHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTS--SGGGGHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHHHH
Confidence            344455778899999999999866 888887766 7779999999999999887421  2344555444444333

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=96.88  E-value=0.0049  Score=48.02  Aligned_cols=68  Identities=9%  Similarity=0.035  Sum_probs=52.8

Q ss_pred             hHHHHHHHHHhcCCCccchHHHHHHH-HHHHHHhHhhHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHH
Q psy16105         56 ASFIAMRAIISKLTSAEELGKVMSAF-MLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSPALFIF  126 (130)
Q Consensus        56 ~~~p~~rs~iSk~v~~~eqG~~~~~~-~~~~sl~~~i~~~l~~~iy~~t~~~~pg~~f~~~a~l~~~~~~l~  126 (130)
                      ...+...+..++..|++++|+.++.. +....++..++|.+...+++..   -+...|.+.+++.+++.++.
T Consensus       328 ~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~---g~~~~f~~~~~~~l~~~~~~  396 (417)
T 2cfq_A          328 FLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI---GFQGAYLVLGLVALGFTLIS  396 (417)
T ss_dssp             HHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHS---HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhc---CcHHHHHHHHHHHHHHHHHH
Confidence            34456678999999999999999994 8888999999999999888742   13456777777776666554

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=96.62  E-value=0.00034  Score=53.18  Aligned_cols=48  Identities=6%  Similarity=-0.086  Sum_probs=41.8

Q ss_pred             HhhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHh
Q psy16105         54 SNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTA  102 (130)
Q Consensus        54 ~~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~  102 (130)
                      .+...|...+.+.+.+| |++|+.+|..+....++..++|.+...+++.
T Consensus       305 ~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~  352 (375)
T 2gfp_A          305 AGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQT  352 (375)
T ss_dssp             HHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHH
T ss_pred             HHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            35567788888899887 8999999999999999999999999888764

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=96.45  E-value=0.0015  Score=51.85  Aligned_cols=78  Identities=10%  Similarity=-0.023  Sum_probs=59.2

Q ss_pred             HHHHHhhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHhccccC-------C-chHHHHHHHHHHH
Q psy16105         50 ASLFSNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFM-------P-STFLLMSLVLTSP  121 (130)
Q Consensus        50 ~~~~~~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t~~~~-------p-g~~f~~~a~l~~~  121 (130)
                      .+...+...|...+.+++.+|++++|+.+|.......++..++|.+...+++.+-..|       + ...|++.+++.++
T Consensus       415 ~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  494 (524)
T 2xut_A          415 LTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAIL  494 (524)
T ss_dssp             HHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHH
Confidence            3444567889999999999999999999999999999999999999998876421101       1 2337777777666


Q ss_pred             HHHHHH
Q psy16105        122 ALFIFL  127 (130)
Q Consensus       122 ~~~l~~  127 (130)
                      +.++..
T Consensus       495 ~~~~~~  500 (524)
T 2xut_A          495 AAIVFA  500 (524)
T ss_dssp             HHHHHC
T ss_pred             HHHHHH
Confidence            665544

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=96.43  E-value=0.0035  Score=49.24  Aligned_cols=70  Identities=7%  Similarity=0.020  Sum_probs=53.8

Q ss_pred             HhhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHH
Q psy16105         54 SNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSPALFIFL  127 (130)
Q Consensus        54 ~~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t~~~~pg~~f~~~a~l~~~~~~l~~  127 (130)
                      .+...|...+.+++.+|++++|+..|.......++..++|.+...+.+.    .....|.+.+++.+.+.++..
T Consensus       400 ~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~  469 (491)
T 4aps_A          400 EMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK----SEVAYFSYFGLGSVVLGIVLV  469 (491)
T ss_dssp             HHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS----STTHHHHHTHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----cHHHHHHHHHHHHHHHHHHHH
Confidence            3455788899999999999999999999999999999999887766543    344566666666655554443

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=95.15  E-value=0.42  Score=37.13  Aligned_cols=71  Identities=8%  Similarity=0.009  Sum_probs=54.6

Q ss_pred             hHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHhc---cccCCchHHHHHHHHHHHHHHHH
Q psy16105         56 ASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTAT---LDFMPSTFLLMSLVLTSPALFIF  126 (130)
Q Consensus        56 ~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t---~~~~pg~~f~~~a~l~~~~~~l~  126 (130)
                      ...|......+...|.+.||+..|.......+++++++.++..+.+..   .....+.+|++.+++.+++.+..
T Consensus       386 ~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~  459 (491)
T 4gc0_A          386 SWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFM  459 (491)
T ss_dssp             TTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence            345778889999999999999999999999999999888877664432   12456778888777776665543

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=89.03  E-value=4.8  Score=31.00  Aligned_cols=48  Identities=13%  Similarity=0.061  Sum_probs=41.1

Q ss_pred             HhhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHH
Q psy16105         54 SNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYT  101 (130)
Q Consensus        54 ~~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~  101 (130)
                      .+...|.....++...|+++||+..+..+....++.++++.+......
T Consensus       140 ~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~  187 (491)
T 4gc0_A          140 VGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIAR  187 (491)
T ss_dssp             HHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhcc
Confidence            466789999999999999999999999999999998888777665543

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=87.96  E-value=0.031  Score=43.38  Aligned_cols=100  Identities=7%  Similarity=0.042  Sum_probs=59.1

Q ss_pred             hHHHHHhhhhhccccchhHHHHHHHHHHHHH--------------------HH---------HHHH--------------
Q psy16105         15 FTVMYLYTRLAFRWNEYNYSTFYTAYYFTDF--------------------LG---------AVAS--------------   51 (130)
Q Consensus        15 ~~i~~ly~~~~f~W~~~~~g~~~~~~~~~~~--------------------~~---------~~~~--------------   51 (130)
                      ...+..|.++++++++.+.|...+...+...                    .+         ....              
T Consensus        27 ~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (417)
T 2cfq_A           27 FPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVG  106 (417)
T ss_dssp             TTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456778888899999999999888765544                    00         0000              


Q ss_pred             -HH----HhhHHHHHHHHHhcCCCc--cchHHHHHHHHHHHHHhHhhHHHHHHHHHHhccccCCchHHHHHHHH
Q psy16105         52 -LF----SNASFIAMRAIISKLTSA--EELGKVMSAFMLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVL  118 (130)
Q Consensus        52 -~~----~~~~~p~~rs~iSk~v~~--~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t~~~~pg~~f~~~a~l  118 (130)
                       ..    .+...++..+.....+++  +++|+.+|......+++..++|++...+.+..    ...+|++.+..
T Consensus       107 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~----~~~~f~~~~~~  176 (417)
T 2cfq_A          107 SIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTIN----NQFVFWLGSGC  176 (417)
T ss_dssp             HHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHHC----SHHHHTTTTTT
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhc----hhHHHHHHHHH
Confidence             00    011122222333333332  45566677776677788889999888887542    34566665544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	130
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	97.99
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	97.96
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	97.93
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	93.81

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=97.99  E-value=2.9e-05  Score=56.13  Aligned_cols=77  Identities=8%  Similarity=0.024  Sum_probs=61.1

Q ss_pred             HHHHHHhhHHHHHHHHHhcCCCccchHHHHHHH-HHHHHHhHhhHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHH
Q psy16105         49 VASLFSNASFIAMRAIISKLTSAEELGKVMSAF-MLFEAIAPMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSPALFIFL  127 (130)
Q Consensus        49 ~~~~~~~~~~p~~rs~iSk~v~~~eqG~~~~~~-~~~~sl~~~i~~~l~~~iy~~t~~~~pg~~f~~~a~l~~~~~~l~~  127 (130)
                      ..+...+...|...+.+++.+|++++|+.+|.. +...+++..++|++...+++.   +-....|++.+++.+...++..
T Consensus       321 l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~---~g~~~~~~~~~~~~~~~~~~~~  397 (417)
T d1pv7a_         321 LHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYES---IGFQGAYLVLGLVALGFTLISV  397 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH---HCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HCHHHHHHHHHHHHHHHHHHHH
Confidence            344456788999999999999999999999985 556789999999999999876   2345677787777766666555


Q ss_pred             h
Q psy16105        128 C  128 (130)
Q Consensus       128 ~  128 (130)
                      |
T Consensus       398 ~  398 (417)
T d1pv7a_         398 F  398 (417)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=97.96  E-value=0.00012  Score=54.24  Aligned_cols=83  Identities=10%  Similarity=-0.000  Sum_probs=65.1

Q ss_pred             HhhhhhccccchhHHHHHHHHHHHHH------------------------------------------------HHHHHH
Q psy16105         20 LYTRLAFRWNEYNYSTFYTAYYFTDF------------------------------------------------LGAVAS   51 (130)
Q Consensus        20 ly~~~~f~W~~~~~g~~~~~~~~~~~------------------------------------------------~~~~~~   51 (130)
                      -+.+ ++|+++.|+|+..+...+...                                                .....+
T Consensus        49 p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  127 (447)
T d1pw4a_          49 PYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCG  127 (447)
T ss_dssp             HHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHH
T ss_pred             HHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHH
Confidence            3444 589999999999887654443                                                112223


Q ss_pred             HHHhhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhHhhHHHHHHHHHHhc
Q psy16105         52 LFSNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIAPMIYNPIYNAVYTAT  103 (130)
Q Consensus        52 ~~~~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~~~i~~~l~~~iy~~t  103 (130)
                      ...+...|+..+++++..|++|||+.+|..+....++..++|++...+....
T Consensus       128 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~  179 (447)
T d1pw4a_         128 WFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWF  179 (447)
T ss_dssp             HHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHT
T ss_pred             HhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhh
Confidence            3446678999999999999999999999999999999999999888776653

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=97.93  E-value=0.0002  Score=53.06  Aligned_cols=109  Identities=10%  Similarity=0.009  Sum_probs=74.1

Q ss_pred             hhHHHHHhhhhhccccchhHHHHHHHHHHHHH------------------------------------------------
Q psy16105         14 EFTVMYLYTRLAFRWNEYNYSTFYTAYYFTDF------------------------------------------------   45 (130)
Q Consensus        14 ~~~i~~ly~~~~f~W~~~~~g~~~~~~~~~~~------------------------------------------------   45 (130)
                      .......|.++.+++++.+.+...+...+..+                                                
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (447)
T d1pw4a_         268 ILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDM  347 (447)
T ss_dssp             HHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHH
T ss_pred             chhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHH
Confidence            34445667788899999998888776654433                                                


Q ss_pred             -HHHHHHHHHhhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHh-HhhHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Q psy16105         46 -LGAVASLFSNASFIAMRAIISKLTSAEELGKVMSAFMLFEAIA-PMIYNPIYNAVYTATLDFMPSTFLLMSLVLTSPAL  123 (130)
Q Consensus        46 -~~~~~~~~~~~~~p~~rs~iSk~v~~~eqG~~~~~~~~~~sl~-~~i~~~l~~~iy~~t~~~~pg~~f~~~a~l~~~~~  123 (130)
                       .....+...+...|......++.+|++++|+..|..+....++ .+++|++...+.+..   -....|++.+++.+++.
T Consensus       348 ~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~---g~~~~~~~~~~~~~~~~  424 (447)
T d1pw4a_         348 ICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF---GWDGGFMVMIGGSILAV  424 (447)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS---CSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ChHHHHHHHHHHHHHHH
Confidence             1112223345667888899999999999999999999888874 566778888887652   22345555555544444


Q ss_pred             HH
Q psy16105        124 FI  125 (130)
Q Consensus       124 ~l  125 (130)
                      ++
T Consensus       425 ~~  426 (447)
T d1pw4a_         425 IL  426 (447)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=93.81  E-value=0.11  Score=36.43  Aligned_cols=31  Identities=6%  Similarity=0.130  Sum_probs=25.3

Q ss_pred             hHHHHHhhhhhccccchhHHHHHHHHHHHHH
Q psy16105         15 FTVMYLYTRLAFRWNEYNYSTFYTAYYFTDF   45 (130)
Q Consensus        15 ~~i~~ly~~~~f~W~~~~~g~~~~~~~~~~~   45 (130)
                      ...+..|.++.+|+++.|.|+..+...+...
T Consensus        27 ~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~   57 (417)
T d1pv7a_          27 FPFFPIWLHDINHISKSDTGIIFAAISLFSL   57 (417)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence            4566678899999999999999988766554