Psyllid ID: psy16108

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90----
Protein Sequence
MGDQLNEAQQNEMMKTQINTFKEFLLQYNKITEICFKDCVNHFISREITKKEESCAVNCLEKYMKMTSRISMRMQEFQMLQNEQMLAASGGNKP
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
MGDQLNEAQQNEMMKTQINTFKEFLLQYNKITEICFKDCVNHFISREITKKEESCAVNCLEKYMKMTSRISMRMQEFQMLQNEQMLAASGGNKP
Flexible Loop (DISEMBL)
mgdqlneaQQNEMMKTQINTFKEFLLQYNKITEICFKDCVNHFISreitkkeescavNCLEKYMKMTSRISMRMQEFQMLQNEQmlaasggnkp
Low Complexity Region (SEG)
MGDQLNEAQQNEMMKTQINTFKEFLLQYNKITEICFKDCVNHFISREITKKEESCAVNCLEKYMKMTSRISMRMQEFQMLQNEQMLAASGGNKP
Disordered region (IsUnstruct)
****************QINTFKEFLLQYNKITEICFKDCVNHFISREITKKEESCAVNCLEKYMKMT***************************
Disordered Region (DISOPRED)
*********************KEFLLQYNKITEICFKDCVNHFISRE******SCAVNCLEKYMKMTSRISMRM********************
Disordered Region (DISEMBL)
*********QNEMMKTQINTFKEFLLQYNKITEICFKDCVNHFISREITKKEESCAVNCLEKYMKMTSRISMRMQEFQMLQNEQM*********
Disordered Region (DISPRO)
****LNEAQQNEMMKTQINTFKEFLLQYNKITEICFKDCVNHFISREITKKEESCAVNCLEKYMKMTSRISMRMQEFQMLQNEQMLAAS*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGDQLNEAQQNEMMKTQINTFKEFLLQYNKITEICFKDCVNHFISREITKKEESCAVNCLEKYMKMTSRISMRMQEFQMLQNEQMLAASGGNKP
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	94	2.2.26 [Sep-21-2011]
Q9Y5J7	89	Mitochondrial import inne	yes	N/A	0.787	0.831	0.554	9e-19
Q2KIV2	89	Mitochondrial import inne	yes	N/A	0.787	0.831	0.554	9e-19
Q9VYD7	95	Mitochondrial import inne	yes	N/A	0.819	0.810	0.480	1e-18
Q9WV97	89	Mitochondrial import inne	yes	N/A	0.787	0.831	0.554	1e-18
Q9WV98	89	Mitochondrial import inne	yes	N/A	0.787	0.831	0.540	4e-18
Q5ZIR8	89	Mitochondrial import inne	yes	N/A	0.787	0.831	0.554	5e-18
Q4V7R1	89	Mitochondrial import inne	N/A	N/A	0.787	0.831	0.554	6e-18
Q9W762	84	Mitochondrial import inne	yes	N/A	0.734	0.821	0.565	8e-17
Q17754	90	Mitochondrial import inne	yes	N/A	0.755	0.788	0.549	1e-16
Q61TH2	78	Mitochondrial import inne	N/A	N/A	0.755	0.910	0.549	4e-16

>sp|Q9Y5J7|TIM9_HUMAN Mitochondrial import inner membrane translocase subunit Tim9 OS=Homo sapiens GN=TIMM9 PE=1 SV=1

 Score = 92.0 bits (227), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 41/74 (55%), Positives = 54/74 (72%)

Query: 17 QINTFKEFLLQYNKITEICFKDCVNHFISREITKKEESCAVNCLEKYMKMTSRISMRMQE 76
          QI  FKEFL  YNK+TE CF DCV  F +RE+  +E +C+ +CL+KY+KMT RISMR QE
Sbjct: 10 QIKQFKEFLGTYNKLTETCFLDCVKDFTTREVKPEETTCSEHCLQKYLKMTQRISMRFQE 69

Query: 77 FQMLQNEQMLAASG 90
          + + QNE + A +G
Sbjct: 70 YHIQQNEALAAKAG 83

Mitochondrial intermembrane chaperone that participates in the import and insertion of multi-pass transmembrane proteins into the mitochondrial inner membrane. May also be required for the transfer of beta-barrel precursors from the TOM complex to the sorting and assembly machinery (SAM complex) of the outer membrane. Acts as a chaperone-like protein that protects the hydrophobic precursors from aggregation and guide them through the mitochondrial intermembrane space.
Homo sapiens (taxid: 9606)

>sp|Q2KIV2|TIM9_BOVIN Mitochondrial import inner membrane translocase subunit Tim9 OS=Bos taurus GN=TIMM9 PE=3 SV=1

 Score = 92.0 bits (227), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 41/74 (55%), Positives = 54/74 (72%)

Query: 17 QINTFKEFLLQYNKITEICFKDCVNHFISREITKKEESCAVNCLEKYMKMTSRISMRMQE 76
          QI  FKEFL  YNK+TE CF DCV  F +RE+  +E +C+ +CL+KY+KMT RISMR QE
Sbjct: 10 QIKQFKEFLGTYNKLTETCFLDCVKDFTTREVKPEETTCSEHCLQKYLKMTQRISMRFQE 69

Query: 77 FQMLQNEQMLAASG 90
          + + QNE + A +G
Sbjct: 70 YHIQQNEALAAKAG 83

Mitochondrial intermembrane chaperone that participates in the import and insertion of multi-pass transmembrane proteins into the mitochondrial inner membrane. May also be required for the transfer of beta-barrel precursors from the TOM complex to the sorting and assembly machinery (SAM complex) of the outer membrane. Acts as a chaperone-like protein that protects the hydrophobic precursors from aggregation and guide them through the mitochondrial intermembrane space.

Bos taurus (taxid: 9913)

>sp|Q9VYD7|TIM9_DROME Mitochondrial import inner membrane translocase subunit Tim9 OS=Drosophila melanogaster GN=Tim9a PE=3 SV=1

 Score = 91.7 bits (226), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 37/77 (48%), Positives = 56/77 (72%)

Query: 11 NEMMKTQINTFKEFLLQYNKITEICFKDCVNHFISREITKKEESCAVNCLEKYMKMTSRI 70
          +++ K QI TF +FL+ YNK++E CF DC+  F +R++   EE C++NC+EKY+KM  R+
Sbjct: 11 DQLDKDQIKTFSDFLMSYNKLSETCFTDCIRDFTTRDVKDSEEKCSLNCMEKYLKMNQRV 70

Query: 71 SMRMQEFQMLQNEQMLA 87
          S R QEFQ++ +E  LA
Sbjct: 71 SQRFQEFQVIAHENALA 87

Mitochondrial intermembrane chaperone that participates in the import and insertion of multi-pass transmembrane proteins into the mitochondrial inner membrane. May also be required for the transfer of beta-barrel precursors from the TOM complex to the sorting and assembly machinery (SAM complex) of the outer membrane. Acts as a chaperone-like protein that protects the hydrophobic precursors from aggregation and guide them through the mitochondrial intermembrane space.

Drosophila melanogaster (taxid: 7227)

>sp|Q9WV97|TIM9_RAT Mitochondrial import inner membrane translocase subunit Tim9 OS=Rattus norvegicus GN=Timm9 PE=1 SV=3

 Score = 91.7 bits (226), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 41/74 (55%), Positives = 54/74 (72%)

Query: 17 QINTFKEFLLQYNKITEICFKDCVNHFISREITKKEESCAVNCLEKYMKMTSRISMRMQE 76
          QI  FKEFL  YNK+TE CF DCV  F +RE+  +E +C+ +CL+KY+KMT RISMR QE
Sbjct: 10 QIKQFKEFLGTYNKLTETCFLDCVKDFTTREVKPEEVTCSEHCLQKYLKMTQRISMRFQE 69

Query: 77 FQMLQNEQMLAASG 90
          + + QNE + A +G
Sbjct: 70 YHIQQNEALAAKAG 83

Mitochondrial intermembrane chaperone that participates in the import and insertion of multi-pass transmembrane proteins into the mitochondrial inner membrane. May also be required for the transfer of beta-barrel precursors from the TOM complex to the sorting and assembly machinery (SAM complex) of the outer membrane. Acts as a chaperone-like protein that protects the hydrophobic precursors from aggregation and guide them through the mitochondrial intermembrane space.

Rattus norvegicus (taxid: 10116)

>sp|Q9WV98|TIM9_MOUSE Mitochondrial import inner membrane translocase subunit Tim9 OS=Mus musculus GN=Timm9 PE=1 SV=1

 Score = 90.1 bits (222), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 40/74 (54%), Positives = 54/74 (72%)

Query: 17 QINTFKEFLLQYNKITEICFKDCVNHFISREITKKEESCAVNCLEKYMKMTSRISMRMQE 76
          QI  FKEFL  YNK+TE CF DCV  F +RE+  +E +C+ +CL+KY+KMT RIS+R QE
Sbjct: 10 QIKQFKEFLGTYNKLTETCFLDCVKDFTTREVKPEEVTCSEHCLQKYLKMTQRISVRFQE 69

Query: 77 FQMLQNEQMLAASG 90
          + + QNE + A +G
Sbjct: 70 YHIQQNEALAAKAG 83

Mitochondrial intermembrane chaperone that participates in the import and insertion of multi-pass transmembrane proteins into the mitochondrial inner membrane. May also be required for the transfer of beta-barrel precursors from the TOM complex to the sorting and assembly machinery (SAM complex) of the outer membrane. Acts as a chaperone-like protein that protects the hydrophobic precursors from aggregation and guide them through the mitochondrial intermembrane space.

Mus musculus (taxid: 10090)

>sp|Q5ZIR8|TIM9_CHICK Mitochondrial import inner membrane translocase subunit Tim9 OS=Gallus gallus GN=TIMM9 PE=2 SV=1

 Score = 89.7 bits (221), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 41/74 (55%), Positives = 54/74 (72%)

Query: 17 QINTFKEFLLQYNKITEICFKDCVNHFISREITKKEESCAVNCLEKYMKMTSRISMRMQE 76
          QI  FKEFL  YNKITE CF DC+  F +RE+  +E +C+ +CL+KY+KMT RISMR QE
Sbjct: 10 QIKQFKEFLGTYNKITENCFMDCIRDFTTREVKPEEITCSEHCLQKYLKMTQRISMRFQE 69

Query: 77 FQMLQNEQMLAASG 90
          + + QNE + A +G
Sbjct: 70 YHIQQNEALAAKAG 83

Mitochondrial intermembrane chaperone that participates in the import and insertion of multi-pass transmembrane proteins into the mitochondrial inner membrane. May also be required for the transfer of beta-barrel precursors from the TOM complex to the sorting and assembly machinery (SAM complex) of the outer membrane. Acts as a chaperone-like protein that protects the hydrophobic precursors from aggregation and guide them through the mitochondrial intermembrane space.

Gallus gallus (taxid: 9031)

>sp|Q4V7R1|TIM9_XENLA Mitochondrial import inner membrane translocase subunit Tim9 OS=Xenopus laevis GN=timm9 PE=3 SV=1

 Score = 89.4 bits (220), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 41/74 (55%), Positives = 54/74 (72%)

Query: 17 QINTFKEFLLQYNKITEICFKDCVNHFISREITKKEESCAVNCLEKYMKMTSRISMRMQE 76
          QI  FKEFL  YNK+TE CF DCV  F +RE+  +E +C+ +CL+KY+KMT RISMR QE
Sbjct: 10 QIKQFKEFLGTYNKLTENCFLDCVKDFTTREVKAEEMTCSEHCLQKYLKMTQRISMRFQE 69

Query: 77 FQMLQNEQMLAASG 90
          + + QNE + A +G
Sbjct: 70 YHIQQNEALAAKAG 83

Mitochondrial intermembrane chaperone that participates in the import and insertion of multi-pass transmembrane proteins into the mitochondrial inner membrane. May also be required for the transfer of beta-barrel precursors from the TOM complex to the sorting and assembly machinery (SAM complex) of the outer membrane. Acts as a chaperone-like protein that protects the hydrophobic precursors from aggregation and guide them through the mitochondrial intermembrane space.

Xenopus laevis (taxid: 8355)

>sp|Q9W762|TIM9_DANRE Mitochondrial import inner membrane translocase subunit Tim9 OS=Danio rerio GN=timm9 PE=2 SV=2

 Score = 85.5 bits (210), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 39/69 (56%), Positives = 51/69 (73%)

Query: 17 QINTFKEFLLQYNKITEICFKDCVNHFISREITKKEESCAVNCLEKYMKMTSRISMRMQE 76
          QI  FKEFL  YNK+TE CF DCV  F +RE+  +E +C+ +CL+KY+KMT RISMR QE
Sbjct: 10 QIKQFKEFLGTYNKLTENCFMDCVKDFTTREVKPEETTCSESCLQKYLKMTQRISMRFQE 69

Query: 77 FQMLQNEQM 85
          + + QNE+ 
Sbjct: 70 YHIQQNERW 78

Mitochondrial intermembrane chaperone that participates in the import and insertion of multi-pass transmembrane proteins into the mitochondrial inner membrane. May also be required for the transfer of beta-barrel precursors from the TOM complex to the sorting and assembly machinery (SAM complex) of the outer membrane. Acts as a chaperone-like protein that protects the hydrophobic precursors from aggregation and guide them through the mitochondrial intermembrane space.

Danio rerio (taxid: 7955)

>sp|Q17754|TIM9_CAEEL Mitochondrial import inner membrane translocase subunit Tim9 OS=Caenorhabditis elegans GN=tin-9.1 PE=3 SV=1

 Score = 84.7 bits (208), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 39/71 (54%), Positives = 50/71 (70%)

Query: 18 INTFKEFLLQYNKITEICFKDCVNHFISREITKKEESCAVNCLEKYMKMTSRISMRMQEF 77
          I TF++FL QYN + E CF  CVN F SR ++ KEESCA NCL+K++KMT R+S R QE 
Sbjct: 7  IQTFRDFLTQYNLVAEQCFNSCVNEFGSRTVSGKEESCANNCLDKFLKMTQRVSQRFQEH 66

Query: 78 QMLQNEQMLAA 88
          Q+L  +   AA
Sbjct: 67 QLLNAQANGAA 77

Mitochondrial intermembrane chaperone that participates in the import and insertion of multi-pass transmembrane proteins into the mitochondrial inner membrane. May also be required for the transfer of beta-barrel precursors from the TOM complex to the sorting and assembly machinery (SAM complex) of the outer membrane. Acts as a chaperone-like protein that protects the hydrophobic precursors from aggregation and guide them through the mitochondrial intermembrane space.

Caenorhabditis elegans (taxid: 6239)

>sp|Q61TH2|TIM9_CAEBR Mitochondrial import inner membrane translocase subunit Tim9 OS=Caenorhabditis briggsae GN=tin-9.1 PE=3 SV=1

 Score = 83.2 bits (204), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 39/71 (54%), Positives = 49/71 (69%)

Query: 18 INTFKEFLLQYNKITEICFKDCVNHFISREITKKEESCAVNCLEKYMKMTSRISMRMQEF 77
          I TF++FL QYN + E CF  CVN F SR +  KEESCA NCL+K++KMT R+S R QE 
Sbjct: 7  IQTFRDFLTQYNLVAEQCFTSCVNEFGSRTVNAKEESCANNCLDKFLKMTQRVSQRFQEH 66

Query: 78 QMLQNEQMLAA 88
          Q+L  +   AA
Sbjct: 67 QILNAQANGAA 77

Mitochondrial intermembrane chaperone that participates in the import and insertion of multi-pass transmembrane proteins into the mitochondrial inner membrane. May also be required for the transfer of beta-barrel precursors from the TOM complex to the sorting and assembly machinery (SAM complex) of the outer membrane. Acts as a chaperone-like protein that protects the hydrophobic precursors from aggregation and guide them through the mitochondrial intermembrane space.

Caenorhabditis briggsae (taxid: 6238)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	94
158289635	94	AGAP000781-PA [Anopheles gambiae str. PE	0.882	0.882	0.523	7e-20
170068367	93	mitochondrial import inner membrane tran	0.861	0.870	0.523	1e-19
307195774	91	Mitochondrial import inner membrane tran	0.829	0.857	0.525	3e-19
270006051	98	hypothetical protein TcasGA2_TC008195 [T	0.776	0.744	0.575	6e-19
332020876	91	Mitochondrial import inner membrane tran	0.765	0.791	0.597	6e-19
158635973	91	mitochondrial import inner membrane tran	0.808	0.835	0.551	7e-19
241174884	91	mitochondrial import inner membrane tran	0.776	0.802	0.589	2e-18
241695142	90	mitochondrial import inner membrane tran	0.776	0.811	0.589	2e-18
442748417	91	Putative mitochondrial import inner memb	0.776	0.802	0.589	2e-18
195168749	94	GL26920 [Drosophila persimilis] gi|19410	0.819	0.819	0.532	2e-18

>gi|158289635|ref|XP_311321.4| AGAP000781-PA [Anopheles gambiae str. PEST] gi|157018612|gb|EAA06794.4| AGAP000781-PA [Anopheles gambiae str. PEST]

 Score =  101 bits (251), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 45/86 (52%), Positives = 63/86 (73%), Gaps = 3/86 (3%)

Query: 11 NEMMKTQINTFKEFLLQYNKITEICFKDCVNHFISREITKKEESCAVNCLEKYMKMTSRI 70
          +++ K QI +F +FLL YNK++E+CF DCV+ F  R ++ KE+ CA+NC+EK++KM  RI
Sbjct: 9  DQLDKDQIKSFSDFLLSYNKLSELCFIDCVSEFTGRTVSDKEDKCALNCMEKFLKMNQRI 68

Query: 71 SMRMQEFQMLQNEQMLAAS---GGNK 93
          S R QEFQML NE  +AA+   GG K
Sbjct: 69 SQRFQEFQMLANENAIAAAQKLGGGK 94

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170068367|ref|XP_001868839.1| mitochondrial import inner membrane translocase subunit Tim9 [Culex quinquefasciatus] gi|167864407|gb|EDS27790.1| mitochondrial import inner membrane translocase subunit Tim9 [Culex quinquefasciatus]

 Score =  100 bits (249), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 44/84 (52%), Positives = 62/84 (73%), Gaps = 3/84 (3%)

Query: 11 NEMMKTQINTFKEFLLQYNKITEICFKDCVNHFISREITKKEESCAVNCLEKYMKMTSRI 70
          +++ K QI +F +FLL YNK++E+CF DCVN F  R ++ KE SC++NC+EK++KM  R+
Sbjct: 9  DQLDKDQIKSFSDFLLSYNKLSELCFLDCVNEFTGRTVSDKESSCSLNCMEKFLKMNQRV 68

Query: 71 SMRMQEFQMLQNEQMLAAS---GG 91
          S R QEFQM+ NE  LAA+   GG
Sbjct: 69 SQRFQEFQMISNENALAAAQKLGG 92

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307195774|gb|EFN77588.1| Mitochondrial import inner membrane translocase subunit Tim9 [Harpegnathos saltator]

 Score = 99.0 bits (245), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 41/78 (52%), Positives = 58/78 (74%)

Query: 12 EMMKTQINTFKEFLLQYNKITEICFKDCVNHFISREITKKEESCAVNCLEKYMKMTSRIS 71
          EM   Q+  F++FL  YNK++EICF DC++ F +R++  KEE CA+NC+EKY+KM  R+S
Sbjct: 8  EMDADQVKVFRDFLASYNKVSEICFVDCIHDFTTRDVGSKEEKCALNCMEKYLKMNQRVS 67

Query: 72 MRMQEFQMLQNEQMLAAS 89
           R QEFQ++ NE  LAA+
Sbjct: 68 QRFQEFQIMANENALAAA 85

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270006051|gb|EFA02499.1| hypothetical protein TcasGA2_TC008195 [Tribolium castaneum]

 Score = 98.2 bits (243), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 42/73 (57%), Positives = 55/73 (75%)

Query: 17 QINTFKEFLLQYNKITEICFKDCVNHFISREITKKEESCAVNCLEKYMKMTSRISMRMQE 76
          Q+ TFK+FL+ YNK+ E+CF DCV+ F SR I   E+ CA+NCLEK++K+  RIS R QE
Sbjct: 18 QVKTFKDFLISYNKLAELCFTDCVSDFTSRNIKGSEDRCALNCLEKFLKVNQRISQRFQE 77

Query: 77 FQMLQNEQMLAAS 89
          FQML NE  +AA+
Sbjct: 78 FQMLANENAIAAA 90

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332020876|gb|EGI61274.1| Mitochondrial import inner membrane translocase subunit Tim9 [Acromyrmex echinatior]

 Score = 98.2 bits (243), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 43/72 (59%), Positives = 56/72 (77%)

Query: 17 QINTFKEFLLQYNKITEICFKDCVNHFISREITKKEESCAVNCLEKYMKMTSRISMRMQE 76
          QI +F++FL  YNK++EICF DC++ F +REI  KEE CA+NC+EKY+KM  RIS R QE
Sbjct: 13 QIKSFRDFLTSYNKLSEICFVDCISDFTTREIRAKEEKCALNCMEKYLKMNQRISQRFQE 72

Query: 77 FQMLQNEQMLAA 88
          FQ+  NE +LAA
Sbjct: 73 FQITANENILAA 84

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158635973|ref|NP_001040519.1| mitochondrial import inner membrane translocase subunit Tim9A [Bombyx mori] gi|95102726|gb|ABF51304.1| mitochondrial import inner membrane translocase subunit Tim9A [Bombyx mori]

 Score = 97.8 bits (242), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 43/78 (55%), Positives = 57/78 (73%), Gaps = 2/78 (2%)

Query: 17 QINTFKEFLLQYNKITEICFKDCVNHFISREITKKEESCAVNCLEKYMKMTSRISMRMQE 76
          QI TFK+FL+QYNK++E+CF DC++ F SR +   E+ C VNC+EKY++M  R+S R  E
Sbjct: 12 QIKTFKDFLVQYNKLSELCFNDCIHDFTSRTLKSTEDKCTVNCMEKYLRMNQRVSQRFHE 71

Query: 77 FQMLQNEQMLAAS--GGN 92
          FQML NE MLA +   GN
Sbjct: 72 FQMLANENMLALAQKSGN 89

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|241174884|ref|XP_002411030.1| mitochondrial import inner membrane translocase subunit Tim9, putative [Ixodes scapularis] gi|215495103|gb|EEC04744.1| mitochondrial import inner membrane translocase subunit Tim9, putative [Ixodes scapularis]

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 43/73 (58%), Positives = 54/73 (73%)

Query: 17 QINTFKEFLLQYNKITEICFKDCVNHFISREITKKEESCAVNCLEKYMKMTSRISMRMQE 76
          QI  FK+FL+ YNK++E+CF DCV+ F  R +  KE+ CA+NC+EKYMKM  RIS R QE
Sbjct: 14 QIKQFKDFLVSYNKLSELCFSDCVHDFTVRHVRDKEDKCAMNCMEKYMKMNQRISQRFQE 73

Query: 77 FQMLQNEQMLAAS 89
          FQM  NE  +AAS
Sbjct: 74 FQMQTNEAAIAAS 86

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|241695142|ref|XP_002413016.1| mitochondrial import inner membrane translocase subunit Tim9, putative [Ixodes scapularis] gi|215506830|gb|EEC16324.1| mitochondrial import inner membrane translocase subunit Tim9, putative [Ixodes scapularis]

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 43/73 (58%), Positives = 54/73 (73%)

Query: 17 QINTFKEFLLQYNKITEICFKDCVNHFISREITKKEESCAVNCLEKYMKMTSRISMRMQE 76
          QI  FK+FL+ YNK++E+CF DCV+ F  R +  KE+ CA+NC+EKYMKM  RIS R QE
Sbjct: 13 QIKQFKDFLVSYNKLSELCFSDCVHDFTVRHVRDKEDKCAMNCMEKYMKMNQRISQRFQE 72

Query: 77 FQMLQNEQMLAAS 89
          FQM  NE  +AAS
Sbjct: 73 FQMQTNEAAIAAS 85

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442748417|gb|JAA66368.1| Putative mitochondrial import inner membrane translocase subunit tim9 [Ixodes ricinus]

 Score = 96.3 bits (238), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 43/73 (58%), Positives = 54/73 (73%)

Query: 17 QINTFKEFLLQYNKITEICFKDCVNHFISREITKKEESCAVNCLEKYMKMTSRISMRMQE 76
          QI  FK+FL+ YNK++E+CF DCV+ F  R +  KE+ CA+NC+EKYMKM  RIS R QE
Sbjct: 14 QIKQFKDFLVSYNKLSELCFSDCVHDFTVRHVRDKEDKCAMNCMEKYMKMNQRISQRFQE 73

Query: 77 FQMLQNEQMLAAS 89
          FQM  NE  +AAS
Sbjct: 74 FQMQTNEAAIAAS 86

Source: Ixodes ricinus

Species: Ixodes ricinus

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195168749|ref|XP_002025193.1| GL26920 [Drosophila persimilis] gi|194108638|gb|EDW30681.1| GL26920 [Drosophila persimilis]

 Score = 96.3 bits (238), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 41/77 (53%), Positives = 58/77 (75%)

Query: 11 NEMMKTQINTFKEFLLQYNKITEICFKDCVNHFISREITKKEESCAVNCLEKYMKMTSRI 70
          +E+ K Q+ TF +FLL YN+++E+CF DCV  F SR++   E++C++NC+EKY+KM  R+
Sbjct: 11 SELDKEQMKTFSDFLLSYNRLSEMCFTDCVRDFTSRDVKDSEKTCSLNCMEKYLKMNQRV 70

Query: 71 SMRMQEFQMLQNEQMLA 87
          S R QEFQML NE  LA
Sbjct: 71 SQRFQEFQMLANENALA 87

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	94
FB|FBgn0030480	95	Tim9a "Tim9a" [Drosophila mela	0.819	0.810	0.480	3.1e-19
UNIPROTKB|F1SSK4	89	TIMM9 "Uncharacterized protein	0.787	0.831	0.554	6.5e-19
UNIPROTKB|Q2KIV2	89	TIMM9 "Mitochondrial import in	0.787	0.831	0.554	8.3e-19
UNIPROTKB|Q9Y5J7	89	TIMM9 "Mitochondrial import in	0.787	0.831	0.554	8.3e-19
UNIPROTKB|J9NRU3	89	TIMM9 "Uncharacterized protein	0.787	0.831	0.540	1.1e-18
RGD|621656	89	Timm9 "translocase of inner mi	0.787	0.831	0.554	1.1e-18
ZFIN|ZDB-GENE-021206-14	89	timm9 "translocase of inner mi	0.787	0.831	0.554	1.1e-18
UNIPROTKB|Q5ZIR8	89	TIMM9 "Mitochondrial import in	0.787	0.831	0.554	1.4e-18
MGI|MGI:1353436	89	Timm9 "translocase of inner mi	0.787	0.831	0.540	2.8e-18
WB|WBGene00006572	90	tin-9.1 [Caenorhabditis elegan	0.755	0.788	0.555	5.3e-17

FB|FBgn0030480 Tim9a "Tim9a" [Drosophila melanogaster (taxid:7227)]

 Score = 230 (86.0 bits), Expect = 3.1e-19, P = 3.1e-19
 Identities = 37/77 (48%), Positives = 56/77 (72%)

Query:    11 NEMMKTQINTFKEFLLQYNKITEICFKDCVNHFISREITKKEESCAVNCLEKYMKMTSRI 70
             +++ K QI TF +FL+ YNK++E CF DC+  F +R++   EE C++NC+EKY+KM  R+
Sbjct:    11 DQLDKDQIKTFSDFLMSYNKLSETCFTDCIRDFTTRDVKDSEEKCSLNCMEKYLKMNQRV 70

Query:    71 SMRMQEFQMLQNEQMLA 87
             S R QEFQ++ +E  LA
Sbjct:    71 SQRFQEFQVIAHENALA 87

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=ISS

GO:0015031 "protein transport" evidence=ISS

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=ISS

GO:0006626 "protein targeting to mitochondrion" evidence=ISS

UNIPROTKB|F1SSK4 TIMM9 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 227 (85.0 bits), Expect = 6.5e-19, P = 6.5e-19
 Identities = 41/74 (55%), Positives = 54/74 (72%)

Query:    17 QINTFKEFLLQYNKITEICFKDCVNHFISREITKKEESCAVNCLEKYMKMTSRISMRMQE 76
             QI  FKEFL  YNK+TE CF DCV  F +RE+  +E +C+ +CL+KY+KMT RISMR QE
Sbjct:    10 QIKQFKEFLGTYNKLTETCFLDCVKDFTTREVKPEENTCSEHCLQKYLKMTQRISMRFQE 69

Query:    77 FQMLQNEQMLAASG 90
             + + QNE + A +G
Sbjct:    70 YHIQQNEALAAKAG 83

GO:0072321 "chaperone-mediated protein transport" evidence=IEA

GO:0051087 "chaperone binding" evidence=IEA

GO:0045039 "protein import into mitochondrial inner membrane" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0042719 "mitochondrial intermembrane space protein transporter complex" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

UNIPROTKB|Q2KIV2 TIMM9 "Mitochondrial import inner membrane translocase subunit Tim9" [Bos taurus (taxid:9913)]

 Score = 226 (84.6 bits), Expect = 8.3e-19, P = 8.3e-19
 Identities = 41/74 (55%), Positives = 54/74 (72%)

Query:    17 QINTFKEFLLQYNKITEICFKDCVNHFISREITKKEESCAVNCLEKYMKMTSRISMRMQE 76
             QI  FKEFL  YNK+TE CF DCV  F +RE+  +E +C+ +CL+KY+KMT RISMR QE
Sbjct:    10 QIKQFKEFLGTYNKLTETCFLDCVKDFTTREVKPEETTCSEHCLQKYLKMTQRISMRFQE 69

Query:    77 FQMLQNEQMLAASG 90
             + + QNE + A +G
Sbjct:    70 YHIQQNEALAAKAG 83

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0072321 "chaperone-mediated protein transport" evidence=IEA

GO:0051087 "chaperone binding" evidence=IEA

GO:0045039 "protein import into mitochondrial inner membrane" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0042719 "mitochondrial intermembrane space protein transporter complex" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|Q9Y5J7 TIMM9 "Mitochondrial import inner membrane translocase subunit Tim9" [Homo sapiens (taxid:9606)]

 Score = 226 (84.6 bits), Expect = 8.3e-19, P = 8.3e-19
 Identities = 41/74 (55%), Positives = 54/74 (72%)

Query:    17 QINTFKEFLLQYNKITEICFKDCVNHFISREITKKEESCAVNCLEKYMKMTSRISMRMQE 76
             QI  FKEFL  YNK+TE CF DCV  F +RE+  +E +C+ +CL+KY+KMT RISMR QE
Sbjct:    10 QIKQFKEFLGTYNKLTETCFLDCVKDFTTREVKPEETTCSEHCLQKYLKMTQRISMRFQE 69

Query:    77 FQMLQNEQMLAASG 90
             + + QNE + A +G
Sbjct:    70 YHIQQNEALAAKAG 83

GO:0007605 "sensory perception of sound" evidence=TAS

GO:0008270 "zinc ion binding" evidence=TAS

GO:0005743 "mitochondrial inner membrane" evidence=IDA;TAS

GO:0006626 "protein targeting to mitochondrion" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0042719 "mitochondrial intermembrane space protein transporter complex" evidence=IDA;TAS

GO:0005758 "mitochondrial intermembrane space" evidence=TAS

GO:0045039 "protein import into mitochondrial inner membrane" evidence=ISS;IDA

GO:0005215 "transporter activity" evidence=IDA

GO:0051087 "chaperone binding" evidence=IPI

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0072321 "chaperone-mediated protein transport" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

UNIPROTKB|J9NRU3 TIMM9 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 225 (84.3 bits), Expect = 1.1e-18, P = 1.1e-18
 Identities = 40/74 (54%), Positives = 54/74 (72%)

Query:    17 QINTFKEFLLQYNKITEICFKDCVNHFISREITKKEESCAVNCLEKYMKMTSRISMRMQE 76
             Q+  FKEFL  YNK+TE CF DCV  F +RE+  +E +C+ +CL+KY+KMT RISMR QE
Sbjct:    10 QVKQFKEFLGTYNKLTETCFLDCVKDFTTREVKPEETTCSEHCLQKYLKMTQRISMRFQE 69

Query:    77 FQMLQNEQMLAASG 90
             + + QNE + A +G
Sbjct:    70 YHIQQNEALAAKAG 83

GO:0046872 "metal ion binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

RGD|621656 Timm9 "translocase of inner mitochondrial membrane 9 homolog (yeast)" [Rattus norvegicus (taxid:10116)]

 Score = 225 (84.3 bits), Expect = 1.1e-18, P = 1.1e-18
 Identities = 41/74 (55%), Positives = 54/74 (72%)

Query:    17 QINTFKEFLLQYNKITEICFKDCVNHFISREITKKEESCAVNCLEKYMKMTSRISMRMQE 76
             QI  FKEFL  YNK+TE CF DCV  F +RE+  +E +C+ +CL+KY+KMT RISMR QE
Sbjct:    10 QIKQFKEFLGTYNKLTETCFLDCVKDFTTREVKPEEVTCSEHCLQKYLKMTQRISMRFQE 69

Query:    77 FQMLQNEQMLAASG 90
             + + QNE + A +G
Sbjct:    70 YHIQQNEALAAKAG 83

GO:0005215 "transporter activity" evidence=IEA;ISO

GO:0005739 "mitochondrion" evidence=ISO

GO:0005743 "mitochondrial inner membrane" evidence=IEA;ISO

GO:0042719 "mitochondrial intermembrane space protein transporter complex" evidence=IEA;ISO

GO:0042803 "protein homodimerization activity" evidence=IEA;ISO

GO:0045039 "protein import into mitochondrial inner membrane" evidence=IEA;ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0051087 "chaperone binding" evidence=IEA;ISO

GO:0072321 "chaperone-mediated protein transport" evidence=IEA;ISO

ZFIN|ZDB-GENE-021206-14 timm9 "translocase of inner mitochondrial membrane 9 homolog" [Danio rerio (taxid:7955)]

 Score = 225 (84.3 bits), Expect = 1.1e-18, P = 1.1e-18
 Identities = 41/74 (55%), Positives = 54/74 (72%)

Query:    17 QINTFKEFLLQYNKITEICFKDCVNHFISREITKKEESCAVNCLEKYMKMTSRISMRMQE 76
             QI  FKEFL  YNK+TE CF DCV  F +RE+  +E +C+ +CL+KY+KMT RISMR QE
Sbjct:    10 QIKQFKEFLGTYNKLTENCFMDCVKDFTTREVKPEETTCSESCLQKYLKMTQRISMRFQE 69

Query:    77 FQMLQNEQMLAASG 90
             + + QNE + A +G
Sbjct:    70 YHIQQNEALAAKAG 83

GO:0005739 "mitochondrion" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|Q5ZIR8 TIMM9 "Mitochondrial import inner membrane translocase subunit Tim9" [Gallus gallus (taxid:9031)]

 Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
 Identities = 41/74 (55%), Positives = 54/74 (72%)

Query:    17 QINTFKEFLLQYNKITEICFKDCVNHFISREITKKEESCAVNCLEKYMKMTSRISMRMQE 76
             QI  FKEFL  YNKITE CF DC+  F +RE+  +E +C+ +CL+KY+KMT RISMR QE
Sbjct:    10 QIKQFKEFLGTYNKITENCFMDCIRDFTTREVKPEEITCSEHCLQKYLKMTQRISMRFQE 69

Query:    77 FQMLQNEQMLAASG 90
             + + QNE + A +G
Sbjct:    70 YHIQQNEALAAKAG 83

GO:0046872 "metal ion binding" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

GO:0042719 "mitochondrial intermembrane space protein transporter complex" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0045039 "protein import into mitochondrial inner membrane" evidence=IEA

GO:0051087 "chaperone binding" evidence=IEA

GO:0072321 "chaperone-mediated protein transport" evidence=IEA

MGI|MGI:1353436 Timm9 "translocase of inner mitochondrial membrane 9" [Mus musculus (taxid:10090)]

 Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
 Identities = 40/74 (54%), Positives = 54/74 (72%)

Query:    17 QINTFKEFLLQYNKITEICFKDCVNHFISREITKKEESCAVNCLEKYMKMTSRISMRMQE 76
             QI  FKEFL  YNK+TE CF DCV  F +RE+  +E +C+ +CL+KY+KMT RIS+R QE
Sbjct:    10 QIKQFKEFLGTYNKLTETCFLDCVKDFTTREVKPEEVTCSEHCLQKYLKMTQRISVRFQE 69

Query:    77 FQMLQNEQMLAASG 90
             + + QNE + A +G
Sbjct:    70 YHIQQNEALAAKAG 83

GO:0005215 "transporter activity" evidence=ISO

GO:0005739 "mitochondrion" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0042719 "mitochondrial intermembrane space protein transporter complex" evidence=ISO;IDA

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0045039 "protein import into mitochondrial inner membrane" evidence=ISO;IDA

GO:0046872 "metal ion binding" evidence=IEA

GO:0051087 "chaperone binding" evidence=ISO

GO:0072321 "chaperone-mediated protein transport" evidence=ISO

WB|WBGene00006572 tin-9.1 [Caenorhabditis elegans (taxid:6239)]

 Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
 Identities = 40/72 (55%), Positives = 51/72 (70%)

Query:    18 INTFKEFLLQYNKITEICFKDCVNHFISREITKKEESCAVNCLEKYMKMTSRISMRMQEF 77
             I TF++FL QYN + E CF  CVN F SR ++ KEESCA NCL+K++KMT R+S R QE 
Sbjct:     7 IQTFRDFLTQYNLVAEQCFNSCVNEFGSRTVSGKEESCANNCLDKFLKMTQRVSQRFQEH 66

Query:    78 QMLQNEQMLAAS 89
             Q+L N Q   A+
Sbjct:    67 QLL-NAQANGAA 77

GO:0045039 "protein import into mitochondrial inner membrane" evidence=IEA;IMP

GO:0006626 "protein targeting to mitochondrion" evidence=IEA

GO:0042719 "mitochondrial intermembrane space protein transporter complex" evidence=IEA

GO:0040007 "growth" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040018 "positive regulation of multicellular organism growth" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0040035 "hermaphrodite genitalia development" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0040014 "regulation of multicellular organism growth" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9XGX7	TIM9_ORYSJ	No assigned EC number	0.4035	0.6063	0.6129	yes	N/A
O74700	TIM9_YEAST	No assigned EC number	0.3866	0.7872	0.8505	yes	N/A
Q9XGX9	TIM9_ARATH	No assigned EC number	0.4035	0.6063	0.6129	yes	N/A
Q2KIV2	TIM9_BOVIN	No assigned EC number	0.5540	0.7872	0.8314	yes	N/A
Q5ZIR8	TIM9_CHICK	No assigned EC number	0.5540	0.7872	0.8314	yes	N/A
Q9W762	TIM9_DANRE	No assigned EC number	0.5652	0.7340	0.8214	yes	N/A
Q9Y8A7	TIM9_EMENI	No assigned EC number	0.3866	0.7872	0.8222	yes	N/A
Q17754	TIM9_CAEEL	No assigned EC number	0.5492	0.7553	0.7888	yes	N/A
Q4WIQ2	TIM9_ASPFU	No assigned EC number	0.3763	0.9148	0.9555	yes	N/A
Q6BU42	TIM9_DEBHA	No assigned EC number	0.3733	0.7872	0.8409	yes	N/A
Q757S0	TIM9_ASHGO	No assigned EC number	0.3866	0.7872	0.8505	yes	N/A
Q6FRT3	TIM9_CANGA	No assigned EC number	0.44	0.7872	0.8505	yes	N/A
Q9WV98	TIM9_MOUSE	No assigned EC number	0.5405	0.7872	0.8314	yes	N/A
Q6CM57	TIM9_KLULA	No assigned EC number	0.4133	0.7872	0.8505	yes	N/A
Q9P7K0	TIM9_SCHPO	No assigned EC number	0.3421	0.7978	0.8928	yes	N/A
Q9VYD7	TIM9_DROME	No assigned EC number	0.4805	0.8191	0.8105	yes	N/A
Q9WV97	TIM9_RAT	No assigned EC number	0.5540	0.7872	0.8314	yes	N/A
Q4IB65	TIM9_GIBZE	No assigned EC number	0.36	0.7872	0.8505	yes	N/A
Q6C6Z2	TIM9_YARLI	No assigned EC number	0.3866	0.7872	0.8705	yes	N/A
Q9Y5J7	TIM9_HUMAN	No assigned EC number	0.5540	0.7872	0.8314	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	94
pfam02953	66	pfam02953, zf-Tim10_DDP, Tim10/DDP family zinc fin	4e-15

>gnl|CDD|202484 pfam02953, zf-Tim10_DDP, Tim10/DDP family zinc finger

 Score = 63.4 bits (155), Expect = 4e-15
 Identities = 26/60 (43%), Positives = 34/60 (56%)

Query: 17 QINTFKEFLLQYNKITEICFKDCVNHFISREITKKEESCAVNCLEKYMKMTSRISMRMQE 76
          Q      F    NK+TE CFK CV  F    ++K EESC   C+EKY+   +R+S R+QE
Sbjct: 6  QELQKANFQELINKLTENCFKKCVTKFPGSSLSKGEESCLDRCVEKYLDANNRVSKRLQE 65

Putative zinc binding domain with four conserved cysteine residues. This domain is found in the human disease protein TIMM8A. Members of this family such as Tim9 and Tim10 are involved in mitochondrial protein import. Members of this family seem to be localised to the mitochondrial intermembrane space. Length = 66

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	94
KOG3479|consensus	83		99.93
PF02953	66	zf-Tim10_DDP: Tim10/DDP family zinc finger; InterP	99.9
KOG1733|consensus	97		99.87
KOG3489|consensus	86		99.86
KOG3480|consensus	90		99.84
KOG3377|consensus	143		92.45
PF05811	131	DUF842: Eukaryotic protein of unknown function (DU	90.86

>KOG3479|consensus

Probab=99.93  E-value=4.2e-25  Score=142.17  Aligned_cols=73  Identities=47%  Similarity=0.889  Sum_probs=68.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16108         15 KTQINTFKEFLLQYNKITEICFKDCVNHFISREITKKEESCAVNCLEKYMKMTSRISMRMQEFQMLQNEQMLA   87 (94)
Q Consensus        15 ~~q~~q~~~f~~~~~~lt~~Cf~kCV~~~~~~~Ls~~E~~Ci~nCv~Ky~~~~~~v~~r~~e~~~~~~e~~~~   87 (94)
                      ..++++++||+.+||+||++||.+||++|.+++|+++|++|+.+|++||+..+++|++||++++...++.+.+
T Consensus         2 ~~~~k~lkDFl~~YN~ltE~CF~dCV~dft~r~l~~~Ee~C~~~C~~Kflk~nqRv~qrf~e~~~~~~~~a~~   74 (83)
T KOG3479|consen    2 VQQIKQLKDFLTLYNKLTELCFSDCVDDFTTRDLSGKEETCVMRCAEKFLKMNQRVSQRFQELQAALNQAAAA   74 (83)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhHhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3588999999999999999999999999999999999999999999999999999999999999888765443

>PF02953 zf-Tim10_DDP: Tim10/DDP family zinc finger; InterPro: IPR004217 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.90  E-value=1.2e-23  Score=129.18  Aligned_cols=60  Identities=42%  Similarity=0.778  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy16108         17 QINTFKEFLLQYNKITEICFKDCVNHFISREITKKEESCAVNCLEKYMKMTSRISMRMQE   76 (94)
Q Consensus        17 q~~q~~~f~~~~~~lt~~Cf~kCV~~~~~~~Ls~~E~~Ci~nCv~Ky~~~~~~v~~r~~e   76 (94)
                      +..++++|+.+|+++++.||+|||++||+++||++|.+||+||++||++++.+|+++|++
T Consensus         6 ~~~q~~~~~~~~~~~t~~Cf~kCv~~~~~~~L~~~E~~Ci~~C~~ky~~~~~~v~~~~~~   65 (66)
T PF02953_consen    6 QEQQMKDFQELFNKLTERCFDKCVTKFPSSSLSSKEESCIDNCVDKYIDTNQFVSKRFQQ   65 (66)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHS-TTSSSS--HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            556778888899999999999999999999999999999999999999999999999985

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a putative zinc binding domain with four conserved cysteine residues. Members of this family include subunits 8, 9, 10 and 13 of the mitochondrial inner membrane translocase complex, which are involved in mitochondrial protein import [, ]. Defects in TIM8 are the cause of 2 human syndromes: Mohr-Tranebjaerg syndrome (MTS) [MIM:304700]; also known as dystonia-deafness syndrome (DDS) or X-linked progressive deafness type 1 (DFN-1). It is a recessive neurodegenerative syndrome characterised by postlingual progressive sensorineural deafness as the first presenting symptom in early childhood, followed by progressive dystonia, spasticity, dysphagia, mental deterioration, paranoia and cortical blindness. Jensen syndrome [MIM:311150]; also known as opticoacoustic nerve atrophy with dementia. This X-linked disease is characterised by deafness, blindness and muscle weakness. The small alpha helical proteins Tim8 and Tim13 assemble into a hexameric complex which can bind Tim23 as its substrate and chaperone the hydrophobic Tim23 across the aqueous membrane space []. More information on zinc fingers can be found at Protein of the Month: Zinc Fingers [].; GO: 0006626 protein targeting to mitochondrion, 0045039 protein import into mitochondrial inner membrane, 0042719 mitochondrial intermembrane space protein transporter complex; PDB: 2BSK_B 3CJH_A 3DXR_A.

>KOG1733|consensus

Probab=99.87  E-value=1.1e-21  Score=128.76  Aligned_cols=80  Identities=25%  Similarity=0.424  Sum_probs=66.2

Q ss_pred             CCCCHHHHH-HHHH--HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16108          3 DQLNEAQQN-EMMK--TQINTFKEFLLQYNKITEICFKDCVNHFISREITKKEESCAVNCLEKYMKMTSRISMRMQEFQM   79 (94)
Q Consensus         3 ~~l~~~~q~-~~~~--~q~~q~~~f~~~~~~lt~~Cf~kCV~~~~~~~Ls~~E~~Ci~nCv~Ky~~~~~~v~~r~~e~~~   79 (94)
                      ...++++.. +++.  .+...+...+.++++|++.||+|||++ |+++|++.|.+||++|++||||+|+.|++.|.  .+
T Consensus        11 ~~~s~~~~~~~~m~qVkqqlAvAnAqeLv~kisekCf~KCit~-PGssl~~~e~~Cis~CmdRyMdawniVSrty~--sR   87 (97)
T KOG1733|consen   11 GAGSSKTTEGELMNQVKQQLAVANAQELVSKISEKCFDKCITK-PGSSLDSSEKSCISRCMDRYMDAWNIVSRTYI--SR   87 (97)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCcccCcchHHHHHHHHHHHHHHHHHHHHHHH--HH
Confidence            344444444 5554  344456667779999999999999998 99999999999999999999999999999998  88


Q ss_pred             HHHHHH
Q psy16108         80 LQNEQM   85 (94)
Q Consensus        80 ~~~e~~   85 (94)
                      +|+|.+
T Consensus        88 lQre~a   93 (97)
T KOG1733|consen   88 LQREQA   93 (97)
T ss_pred             HHHHHH
Confidence            888865

>KOG3489|consensus

Probab=99.86  E-value=3.9e-21  Score=124.28  Aligned_cols=61  Identities=23%  Similarity=0.566  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16108         18 INTFKEFLLQYNKITEICFKDCVNHFISREITKKEESCAVNCLEKYMKMTSRISMRMQEFQM   79 (94)
Q Consensus        18 ~~q~~~f~~~~~~lt~~Cf~kCV~~~~~~~Ls~~E~~Ci~nCv~Ky~~~~~~v~~r~~e~~~   79 (94)
                      ..+.+.|+.++|.+|++||+|||.+ |+++||++|++|+.|||+||||++.+|.+||+.+.+
T Consensus        21 E~qk~k~~~~VHqft~~CWdKCi~~-~~sklds~~e~ClsnCV~RfiDts~~I~~r~~~~~~   81 (86)
T KOG3489|consen   21 ETQKQKFQEQVHQFTEICWDKCIEK-PGSKLDSSEETCLSNCVNRFIDTSLFIVKRLAQMNQ   81 (86)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcC-CcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3455666669999999999999998 559999999999999999999999999999996554

>KOG3480|consensus

Probab=99.84  E-value=9.7e-21  Score=123.03  Aligned_cols=78  Identities=22%  Similarity=0.557  Sum_probs=70.7

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16108          4 QLNEAQQNEMMKTQINTFKEFLLQYNKITEICFKDCVN-HFISREITKKEESCAVNCLEKYMKMTSRISMRMQEFQMLQN   82 (94)
Q Consensus         4 ~l~~~~q~~~~~~q~~q~~~f~~~~~~lt~~Cf~kCV~-~~~~~~Ls~~E~~Ci~nCv~Ky~~~~~~v~~r~~e~~~~~~   82 (94)
                      +....+++.+.+.|+..+.+   +||+|+..|++|||+ .|..++|+++|.+||||||.||++++..|+++++++.+..+
T Consensus         7 q~~~~~k~q~Ae~E~emm~d---~fNrl~~tC~~KCI~~~y~EaeLtKGE~~CiDRCVaKy~~~n~~vG~~lq~~~~~~e   83 (90)
T KOG3480|consen    7 QTVDQQKAQMAELEVEMMSD---MFNRLTNTCHKKCIPPRYKEAELTKGESVCIDRCVAKYLDVNEKVGKKLQAMGQGDE   83 (90)
T ss_pred             cccCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhCCcccccccccCchhhHHHHHHHHHHHHHHHHHHHHHhcCCCcH
Confidence            45567888888999999999   999999999999996 69999999999999999999999999999999998877666


Q ss_pred             HH
Q psy16108         83 EQ   84 (94)
Q Consensus        83 e~   84 (94)
                      +.
T Consensus        84 ~~   85 (90)
T KOG3480|consen   84 AA   85 (90)
T ss_pred             HH
Confidence            54

>KOG3377|consensus

Probab=92.45  E-value=0.73  Score=32.64  Aligned_cols=56  Identities=18%  Similarity=0.370  Sum_probs=38.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCCC----CCchhHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy16108         21 FKEFLLQYNKITEICFKDCVNHFISR----EITKKEESCAVNCLEKYMKMTSRISMRMQE   76 (94)
Q Consensus        21 ~~~f~~~~~~lt~~Cf~kCV~~~~~~----~Ls~~E~~Ci~nCv~Ky~~~~~~v~~r~~e   76 (94)
                      |-+|+.-+++-+-.|-+|=-.+.+.+    +.....++|+.+||++++.+---+.+++.+
T Consensus        78 l~~FQ~RL~Rc~m~C~Dk~~~~~~~~~~~~~~~~~~e~Cvn~cvd~~v~liP~m~k~MK~  137 (143)
T KOG3377|consen   78 LGKFQDRLNRCLMVCNDKFEASKLQGSKRLKAVQQFESCVNKCVDDHVGLIPTMVKRMKE  137 (143)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHhcccCCchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            44555566666666666543322222    245567799999999999999988888764

>PF05811 DUF842: Eukaryotic protein of unknown function (DUF842); InterPro: IPR008560 This family consists of a number of conserved eukaryotic proteins of unknown function

Probab=90.86  E-value=3.8  Score=28.08  Aligned_cols=56  Identities=18%  Similarity=0.416  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCCCC----CchhHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy16108         21 FKEFLLQYNKITEICFKDCVNHFISRE----ITKKEESCAVNCLEKYMKMTSRISMRMQE   76 (94)
Q Consensus        21 ~~~f~~~~~~lt~~Cf~kCV~~~~~~~----Ls~~E~~Ci~nCv~Ky~~~~~~v~~r~~e   76 (94)
                      +..|+.-+++-+-.|.++=-..++.+.    ....=+.|+..|+++|+..--.|.+|+.+
T Consensus        70 l~~FQ~rlqrC~~~C~dk~~d~~~~~~~~~~~~~~~e~C~~~Cvd~hi~llP~l~~r~k~  129 (131)
T PF05811_consen   70 LEQFQNRLQRCVMHCQDKAKDKMDPNPNESDAEKQLESCVNKCVDDHIKLLPSLTKRMKK  129 (131)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHh
Confidence            445555777777777776555432111    11222589999999999999999988863

The sequences carry three sets of CxxxC motifs, which might suggest a type of zinc-finger formation.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	94
2bsk_A	89	Crystal Structure Of The Tim9 Tim10 Hexameric Compl		7e-20
3dxr_A	89	Crystal Structure Of The Yeast Inter-Membrane Space		2e-10

>pdb|2BSK|A Chain A, Crystal Structure Of The Tim9 Tim10 Hexameric Complex Length = 89

Iteration: 1
 Score = 92.0 bits (227), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 41/74 (55%), Positives = 54/74 (72%)
Query: 17 QINTFKEFLLQYNKITEICFKDCVNHFISREITKKEESCAVNCLEKYMKMTSRISMRMQE 76
          QI  FKEFL  YNK+TE CF DCV  F +RE+  +E +C+ +CL+KY+KMT RISMR QE
Sbjct: 10 QIKQFKEFLGTYNKLTETCFLDCVKDFTTREVKPEETTCSEHCLQKYLKMTQRISMRFQE 69
Query: 77 FQMLQNEQMLAASG 90
          + + QNE + A +G
Sbjct: 70 YHIQQNEALAAKAG 83

>pdb|3DXR|A Chain A, Crystal Structure Of The Yeast Inter-Membrane Space Chaperone Assembly Tim9.10 Length = 89

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 3  DQLNEAQQNEMMKT-QINTFKEFLLQYNKITEICFKDCVNHFISREITKKEESCAVNCLE 61
          D LN  +Q E  K  +    K+F+  Y+ + E CF DCVN F + ++T KE++C + C E
Sbjct: 4  DALNSKEQQEFQKVVEQKQMKDFMRLYSNLVERCFTDCVNDFTTSKLTNKEQTCIMKCSE 63
Query: 62 KYMKMTSRISMRMQE 76
          K++K + R+  R QE
Sbjct: 64 KFLKHSERVGQRFQE 78

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	94
2bsk_A	89	Mitochondrial import inner membrane translocase su	2e-20
3dxr_A	89	Mitochondrial import inner membrane translocase su	2e-20
3dxr_B	95	Mitochondrial import inner membrane translocase su	2e-13
2bsk_B	90	Mitochondrial import inner membrane translocase su	3e-13
3cjh_B	64	Mitochondrial import inner membrane translocase S	1e-07
3cjh_A	64	Mitochondrial import inner membrane translocase S	3e-05

>2bsk_A Mitochondrial import inner membrane translocase subunit TIM9 A; protein transport, mitochondrial protein import, TIM complex; 3.3A {Homo sapiens} SCOP: g.83.1.1 Length = 89

 Score = 77.0 bits (189), Expect = 2e-20
 Identities = 41/74 (55%), Positives = 54/74 (72%)

Query: 17 QINTFKEFLLQYNKITEICFKDCVNHFISREITKKEESCAVNCLEKYMKMTSRISMRMQE 76
          QI  FKEFL  YNK+TE CF DCV  F +RE+  +E +C+ +CL+KY+KMT RISMR QE
Sbjct: 10 QIKQFKEFLGTYNKLTETCFLDCVKDFTTREVKPEETTCSEHCLQKYLKMTQRISMRFQE 69

Query: 77 FQMLQNEQMLAASG 90
          + + QNE + A +G
Sbjct: 70 YHIQQNEALAAKAG 83

>3dxr_A Mitochondrial import inner membrane translocase subunit TIM9; alpha-propeller, helix-turn-helix, intramolecular disulfides., chaperone; 2.50A {Saccharomyces cerevisiae} Length = 89

 Score = 76.9 bits (189), Expect = 2e-20
 Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 1/84 (1%)

Query: 3  DQLNEAQQNEMMKT-QINTFKEFLLQYNKITEICFKDCVNHFISREITKKEESCAVNCLE 61
          D LN  +Q E  K  +    K+F+  Y+ + E CF DCVN F + ++T KE++C + C E
Sbjct: 4  DALNSKEQQEFQKVVEQKQMKDFMRLYSNLVERCFTDCVNDFTTSKLTNKEQTCIMKCSE 63

Query: 62 KYMKMTSRISMRMQEFQMLQNEQM 85
          K++K + R+  R QE      + +
Sbjct: 64 KFLKHSERVGQRFQEQNAALGQGL 87

>3dxr_B Mitochondrial import inner membrane translocase subunit TIM10; alpha-propeller, helix-turn-helix, intramolecular disulfides., chaperone; 2.50A {Saccharomyces cerevisiae} Length = 95

 Score = 59.6 bits (144), Expect = 2e-13
 Identities = 18/80 (22%), Positives = 32/80 (40%), Gaps = 1/80 (1%)

Query: 1  MGDQLNEAQQNEMMKTQINTFKEFLLQYNKITEICFKDCVNHFISR-EITKKEESCAVNC 59
           G    +    + ++            +NK+   C+K C+N   S  E+ K E SC   C
Sbjct: 8  FGGGQPQLSSQQKIQAAEAELDLVTDMFNKLVNNCYKKCINTSYSEGELNKNESSCLDRC 67

Query: 60 LEKYMKMTSRISMRMQEFQM 79
          + KY +   ++   MQ+   
Sbjct: 68 VAKYFETNVQVGENMQKMGQ 87

>2bsk_B Mitochondrial import inner membrane translocase subunit TIM10; protein transport, mitochondrial protein import, TIM complex; 3.3A {Homo sapiens} SCOP: g.83.1.1 Length = 90

 Score = 58.9 bits (142), Expect = 3e-13
 Identities = 19/87 (21%), Positives = 33/87 (37%), Gaps = 1/87 (1%)

Query: 9  QQNEMMKTQINTFKEFLLQYNKITEICFKDCVNH-FISREITKKEESCAVNCLEKYMKMT 67
                       +     YN++T  C + CV   +   E++K E  C   C+ KY+ + 
Sbjct: 3  PLRAQQLAAELEVEMMADMYNRMTSACHRKCVPPHYKEAELSKGESVCLDRCVSKYLDIH 62

Query: 68 SRISMRMQEFQMLQNEQMLAASGGNKP 94
           R+  ++ E  M   E M      + P
Sbjct: 63 ERMGKKLTELSMQDEELMKRVQQSSGP 89

>3cjh_B Mitochondrial import inner membrane translocase S TIM8; cyclic heterohexamer, chaperone, M binding, mitochondrion, protein transport; 2.60A {Saccharomyces cerevisiae} Length = 64

 Score = 43.7 bits (103), Expect = 1e-07
 Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 6/69 (8%)

Query: 10 QNEMMKTQINTFKEFLLQYNKITEICFKDCVNHFISREITKKEESCAVNCLEKYMKMTSR 69
          + E  K ++          ++ T ICFK CV       ++ +EE C  NC+ +++    R
Sbjct: 2  EGENSKQKVQM------SIHQFTNICFKKCVESVNDSNLSSQEEQCLSNCVNRFLDTNIR 55

Query: 70 ISMRMQEFQ 78
          I   +Q  +
Sbjct: 56 IVNGLQNTR 64

>3cjh_A Mitochondrial import inner membrane translocase S TIM13; cyclic heterohexamer, chaperone, M binding, mitochondrion, protein transport; 2.60A {Saccharomyces cerevisiae} Length = 64

 Score = 37.5 bits (87), Expect = 3e-05
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 6/56 (10%)

Query: 29 NKITEICFKDCVNHFISREITKKEESCAVNCLEKYMKMTSRISMRMQEFQMLQNEQ 84
          NKI+E CF+ C    ++     + ++C   CL KYM+  + IS        +QN  
Sbjct: 10 NKISENCFEKC----LTSPYATRNDACIDQCLAKYMRSWNVISKAYI--SRIQNAS 59

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	94
3dxr_A	89	Mitochondrial import inner membrane translocase su	99.95
2bsk_A	89	Mitochondrial import inner membrane translocase su	99.94
2bsk_B	90	Mitochondrial import inner membrane translocase su	99.94
3cjh_B	64	Mitochondrial import inner membrane translocase S	99.91
3dxr_B	95	Mitochondrial import inner membrane translocase su	99.91
3cjh_A	64	Mitochondrial import inner membrane translocase S	99.84

>3dxr_A Mitochondrial import inner membrane translocase subunit TIM9; alpha-propeller, helix-turn-helix, intramolecular disulfides., chaperone; 2.50A {Saccharomyces cerevisiae}

Probab=99.95  E-value=3.7e-28  Score=157.55  Aligned_cols=77  Identities=38%  Similarity=0.769  Sum_probs=63.1

Q ss_pred             CCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16108          3 DQLNEAQQNEMMK-TQINTFKEFLLQYNKITEICFKDCVNHFISREITKKEESCAVNCLEKYMKMTSRISMRMQEFQM   79 (94)
Q Consensus         3 ~~l~~~~q~~~~~-~q~~q~~~f~~~~~~lt~~Cf~kCV~~~~~~~Ls~~E~~Ci~nCv~Ky~~~~~~v~~r~~e~~~   79 (94)
                      ++|+++++.+|.. ++..++++|+.+||+||+.||+|||++||+++|+++|.+||+|||+|||+++.+|++||+++++
T Consensus         4 ~~l~~~~~~el~~~~~e~q~k~~~~l~~~lte~Cf~kCv~~~~~~~L~~~E~~Ci~~Cv~Ky~~~~~~v~~~~~~~~~   81 (89)
T 3dxr_A            4 DALNSKEQQEFQKVVEQKQMKDFMRLYSNLVERCFTDCVNDFTTSKLTNKEQTCIMKCSEKFLKHSERVGQRFQEQNA   81 (89)
T ss_dssp             ----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCchHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4899999999986 6788999999999999999999999999999999999999999999999999999999997643

>2bsk_A Mitochondrial import inner membrane translocase subunit TIM9 A; protein transport, mitochondrial protein import, TIM complex; 3.3A {Homo sapiens} SCOP: g.83.1.1

Probab=99.94  E-value=8.6e-28  Score=155.89  Aligned_cols=78  Identities=53%  Similarity=0.932  Sum_probs=67.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy16108         13 MMKTQINTFKEFLLQYNKITEICFKDCVNHFISREITKKEESCAVNCLEKYMKMTSRISMRMQEFQMLQNEQMLAASG   90 (94)
Q Consensus        13 ~~~~q~~q~~~f~~~~~~lt~~Cf~kCV~~~~~~~Ls~~E~~Ci~nCv~Ky~~~~~~v~~r~~e~~~~~~e~~~~~~~   90 (94)
                      +...|+.++++|+.+||+||++||+|||++||+++|+++|++||+|||+|||+++.+|++||++++++++|.+.++++
T Consensus         6 ~~~~q~~q~~~~~~l~n~lte~Cf~KCv~~~~~~~L~~~E~~Ci~~Cv~Ky~d~~~~V~~~~~~~~~~~~~~~~~~~~   83 (89)
T 2bsk_A            6 PESDQIKQFKEFLGTYNKLTETCFLDCVKDFTTREVKPEETTCSEHCLQKYLKMTQRISMRFQEYHIQQNEALAAKAG   83 (89)
T ss_dssp             -------CCHHHHHHHHHHHHHHHHHHCCCCSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcCCchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445678889999999999999999999999999999999999999999999999999999999999999988877654

>2bsk_B Mitochondrial import inner membrane translocase subunit TIM10; protein transport, mitochondrial protein import, TIM complex; 3.3A {Homo sapiens} SCOP: g.83.1.1

Probab=99.94  E-value=1.5e-27  Score=154.73  Aligned_cols=78  Identities=26%  Similarity=0.548  Sum_probs=60.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhc-CCCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Q psy16108         17 QINTFKEFLLQYNKITEICFKDCVN-HFISREITKKEESCAVNCLEKYMKMTSRISMRMQEFQMLQNEQMLAASGGNKP   94 (94)
Q Consensus        17 q~~q~~~f~~~~~~lt~~Cf~kCV~-~~~~~~Ls~~E~~Ci~nCv~Ky~~~~~~v~~r~~e~~~~~~e~~~~~~~~~~~   94 (94)
                      +..++++|+.+||+||+.||+|||+ +||+++|+++|++||+|||+|||+++.+|++||++..+.++|.+.+.++|+.|
T Consensus        11 ~e~q~~~~~~l~n~lte~Cf~KCv~~~~~~~~L~~~E~~Ci~~Cv~Ky~d~~~~V~~~~~~~~~~~~e~~~~~~~~~~~   89 (90)
T 2bsk_B           11 AELEVEMMADMYNRMTSACHRKCVPPHYKEAELSKGESVCLDRCVSKYLDIHERMGKKLTELSMQDEELMKRVQQSSGP   89 (90)
T ss_dssp             --CTTTTTHHHHHHHHHHHHHHHCCTTCCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCCcCcCChhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC
Confidence            4456667777999999999999994 78999999999999999999999999999999999999999999999999887

>3cjh_B Mitochondrial import inner membrane translocase S TIM8; cyclic heterohexamer, chaperone, M binding, mitochondrion, protein transport; 2.60A {Saccharomyces cerevisiae}

Probab=99.91  E-value=6.3e-25  Score=134.42  Aligned_cols=58  Identities=26%  Similarity=0.619  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16108         20 TFKEFLLQYNKITEICFKDCVNHFISREITKKEESCAVNCLEKYMKMTSRISMRMQEF   77 (94)
Q Consensus        20 q~~~f~~~~~~lt~~Cf~kCV~~~~~~~Ls~~E~~Ci~nCv~Ky~~~~~~v~~r~~e~   77 (94)
                      +++.|+.+||+||+.||+|||++||+++|+++|++||+||++|||+++.+|++||+++
T Consensus         6 ~~~~~~~~~~~lt~~Cf~kCv~~~~~~~L~~~E~~Ci~~Cv~ky~~~~~~v~~~~~~~   63 (64)
T 3cjh_B            6 SKQKVQMSIHQFTNICFKKCVESVNDSNLSSQEEQCLSNCVNRFLDTNIRIVNGLQNT   63 (64)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHCCCCSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHcccCCCCcCChhHhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4455556999999999999999999999999999999999999999999999999864

>3dxr_B Mitochondrial import inner membrane translocase subunit TIM10; alpha-propeller, helix-turn-helix, intramolecular disulfides., chaperone; 2.50A {Saccharomyces cerevisiae}

Probab=99.91  E-value=7.1e-25  Score=143.90  Aligned_cols=73  Identities=25%  Similarity=0.528  Sum_probs=58.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16108          5 LNEAQQNEMMKTQINTFKEFLLQYNKITEICFKDCVN-HFISREITKKEESCAVNCLEKYMKMTSRISMRMQEFQML   80 (94)
Q Consensus         5 l~~~~q~~~~~~q~~q~~~f~~~~~~lt~~Cf~kCV~-~~~~~~Ls~~E~~Ci~nCv~Ky~~~~~~v~~r~~e~~~~   80 (94)
                      .+++|+..+.++   ++++|+.+||+||++||+|||+ +|++++|+++|++||+|||+|||++|.+|++||+++++.
T Consensus        15 ~~~~qk~~~aE~---q~~~~~~l~nklte~Cf~KCV~~~~~~~~L~~~E~~Ci~~Cv~Ky~d~~~~V~~~~q~~~q~   88 (95)
T 3dxr_B           15 LSSQQKIQAAEA---ELDLVTDMFNKLVNNCYKKCINTSYSEGELNKNESSCLDRCVAKYFETNVQVGENMQKMGQS   88 (95)
T ss_dssp             --CTTTTHHHHH---HHHHHHHHHHHHHHHHHHHHCCCTTCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred             CCCHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            344455555444   5555666999999999999999 689999999999999999999999999999999976644

>3cjh_A Mitochondrial import inner membrane translocase S TIM13; cyclic heterohexamer, chaperone, M binding, mitochondrion, protein transport; 2.60A {Saccharomyces cerevisiae}

Probab=99.84  E-value=6.4e-22  Score=121.35  Aligned_cols=52  Identities=29%  Similarity=0.503  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16108         22 KEFLLQYNKITEICFKDCVNHFISREITKKEESCAVNCLEKYMKMTSRISMRMQEF   77 (94)
Q Consensus        22 ~~f~~~~~~lt~~Cf~kCV~~~~~~~Ls~~E~~Ci~nCv~Ky~~~~~~v~~r~~e~   77 (94)
                      +.|+.+||+||+.||+|||++ |   |+++|++||+||++|||+++++|+++|.+.
T Consensus         3 a~~~~l~~~lt~~Cf~kCv~~-~---L~~~E~~Ci~~Cv~Ky~~~~~~v~~~~~~~   54 (64)
T 3cjh_A            3 ANATELVNKISENCFEKCLTS-P---YATRNDACIDQCLAKYMRSWNVISKAYISR   54 (64)
T ss_dssp             --CHHHHHHHHHHHHHHHCCT-T---CCSCCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHCCC-c---CChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455669999999999999987 4   999999999999999999999999999953

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	94
d2bska1	73	g.83.1.1 (A:13-85) Mitochondrial import inner memb	1e-22
d2bskb1	65	g.83.1.1 (B:13-77) Mitochondrial import inner memb	2e-13

>d2bska1 g.83.1.1 (A:13-85) Mitochondrial import inner membrane translocase subunit Tim9 {Human (Homo sapiens) [TaxId: 9606]} Length = 73

class: Small proteins
fold: Tim10-like
superfamily: Tim10-like
family: Tim10/DDP
domain: Mitochondrial import inner membrane translocase subunit Tim9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.0 bits (200), Expect = 1e-22
 Identities = 39/70 (55%), Positives = 52/70 (74%)

Query: 21 FKEFLLQYNKITEICFKDCVNHFISREITKKEESCAVNCLEKYMKMTSRISMRMQEFQML 80
          FKEFL  YNK+TE CF DCV  F +RE+  +E +C+ +CL+KY+KMT RISMR QE+ + 
Sbjct: 2  FKEFLGTYNKLTETCFLDCVKDFTTREVKPEETTCSEHCLQKYLKMTQRISMRFQEYHIQ 61

Query: 81 QNEQMLAASG 90
          QNE + A +G
Sbjct: 62 QNEALAAKAG 71

>d2bskb1 g.83.1.1 (B:13-77) Mitochondrial import inner membrane translocase subunit Tim10 {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: Small proteins
fold: Tim10-like
superfamily: Tim10-like
family: Tim10/DDP
domain: Mitochondrial import inner membrane translocase subunit Tim10
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.1 bits (138), Expect = 2e-13
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 28 YNKITEICFKDCVNH-FISREITKKEESCAVNCLEKYMKMTSRISMRMQEFQM 79
          YN++T  C + CV   +   E++K E  C   C+ KY+ +  R+  ++ E  M
Sbjct: 10 YNRMTSACHRKCVPPHYKEAELSKGESVCLDRCVSKYLDIHERMGKKLTELSM 62

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	94
d2bska1	73	Mitochondrial import inner membrane translocase su	99.95
d2bskb1	65	Mitochondrial import inner membrane translocase su	99.88

>d2bska1 g.83.1.1 (A:13-85) Mitochondrial import inner membrane translocase subunit Tim9 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Tim10-like
superfamily: Tim10-like
family: Tim10/DDP
domain: Mitochondrial import inner membrane translocase subunit Tim9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=5.9e-29  Score=155.08  Aligned_cols=71  Identities=55%  Similarity=1.008  Sum_probs=66.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy16108         20 TFKEFLLQYNKITEICFKDCVNHFISREITKKEESCAVNCLEKYMKMTSRISMRMQEFQMLQNEQMLAASG   90 (94)
Q Consensus        20 q~~~f~~~~~~lt~~Cf~kCV~~~~~~~Ls~~E~~Ci~nCv~Ky~~~~~~v~~r~~e~~~~~~e~~~~~~~   90 (94)
                      |+++|+.+||+||+.||+|||++||+++|+++|.+||+|||+||++++.+|++||+|++++++|.++++++
T Consensus         1 Q~kdfl~~yn~lte~Cf~kCv~~~~~~~L~~~E~~Ci~~Cv~Kf~~~~~~v~~rfqe~q~~~ne~~~~~~~   71 (73)
T d2bska1           1 QFKEFLGTYNKLTETCFLDCVKDFTTREVKPEETTCSEHCLQKYLKMTQRISMRFQEYHIQQNEALAAKAG   71 (73)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHCCCCSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHhCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            46899999999999999999999999999999999999999999999999999999999999987776653

>d2bskb1 g.83.1.1 (B:13-77) Mitochondrial import inner membrane translocase subunit Tim10 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Tim10-like
superfamily: Tim10-like
family: Tim10/DDP
domain: Mitochondrial import inner membrane translocase subunit Tim10
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.2e-23  Score=128.18  Aligned_cols=59  Identities=29%  Similarity=0.734  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhc-CCCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16108         19 NTFKEFLLQYNKITEICFKDCVN-HFISREITKKEESCAVNCLEKYMKMTSRISMRMQEFQML   80 (94)
Q Consensus        19 ~q~~~f~~~~~~lt~~Cf~kCV~-~~~~~~Ls~~E~~Ci~nCv~Ky~~~~~~v~~r~~e~~~~   80 (94)
                      ..+++   +||+||+.||+|||+ .|++++|+++|.+||+||++||++++.+|++||+++.++
T Consensus         4 ~~~~~---m~nklt~~Cf~kCV~~~~~~~~L~~~E~~Ci~~C~~ky~d~~~~v~~r~q~~~~~   63 (65)
T d2bskb1           4 EMMAD---MYNRMTSACHRKCVPPHYKEAELSKGESVCLDRCVSKYLDIHERMGKKLTELSMQ   63 (65)
T ss_dssp             TTTHH---HHHHHHHHHHHHHCCTTCCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHH---HHHHHHHHHHHHHCCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            34555   999999999999997 577999999999999999999999999999999977654