Psyllid ID: psy16116

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610--
Protein Sequence
MKVPQYYCVFFVATAGLQGNLLGSDEQEIILLIYVIIDSYVNKVLITSQYKEPIQGFKKVLVEHILEFLGEFASNIVYQGVHMVYNSQGQPSGEAFIQMDSEHSAYLAAQLRHNRNMIFGKKQRYIEVFQCSGEDMNLVLNGVLPPTSPAISPVGKTLLSPGMLPHSSQPLYPQHNTQINPGLSHLDPLVNVHLTQALAQAQYAKSQQDNLMLMNQIAAQQMAALNKPHNMALNGHTPTLIPAPSPNALMPPPLNSKSTTIPTNLPALPAVPTSGGYFPQFQLPINMNTAHLLQPMNTPFFFNMPRMPVTPQVLPKFPVHQLNQTPTVYTIPTPGNPVALCPLVQNIWLSLLLNTIPGYEQVLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGEDFINVAGGNNNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALSKHKESIGIRYIELFRSTTAEVQQVLNKTMELPKNNSLTSSNNGLSAQQPMLSHLAQVPVPYLPQHIITSGTRKDCIRLRGLPYEALCILMDIFFVGQQDSFVHKVPK
Secondary Structure (PSIPRED)
cccccEEEEEEEEEcccccccccccccEEEEEEEEEEccccccccccccccccccccccccHHHHHHHHHccccccccccEEEEEcccccccccEEEEEccHHHHHHHHHHHccccccccccccEEEEEEccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccHHHccccccEEEEEEEEcccccccEEEEEEEccHHHHHHHHHHcccccccEEEEEEEccccccccccccccccccccccccccEEEEEEcccccccHHHHHHHHHccccccccccccccEEEEEEccccccEEEEEEEEccHHHHHHHHHHcccccccEEEEEEEccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccHHHHHHccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHEEEEEEHHHcccccccccccccccccEEEEcccccccccEccccccccccccccccHHHHHHHHHHHHHHcccccEEEEEcccccccccEEEEEccHHHHHHHHHHHHHHHcccccEEEEEEEEEccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccHHEEEEEccccHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccEccccccHHHHHHcccHHHHHcccccccccccccccccccccccccccccccccccccEEEEccccccccHHHHHHHHcccccccEEEEEcccccccccEEEEEccHHHHHHHHHHHHHHccccEEEEEcccHHHHHHHHccccccccccccccccEEEEEccccccccHHHHHHHHccccccccccccccccEEEEEcccccccccEEEEEccHHHHHHHHHHHHHHccccEEEEEcccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccHHHHHHHHcccccEEEEcccc
Coil and Loop (DISEMBL)
MKVPQYYCVFFVATaglqgnllgsdeQEIILLIYVIIDSYVNKVLITSQYKEPIQGFKKVLVEHILEFLGEFASNIVYQGVHMVynsqgqpsgeaFIQMDSEHSAYLAAQLRHNRNMIFGKKQRYIEVFQCSgedmnlvlngvlpptspaispvgktllspgmlphssqplypqhntqinpglshldplVNVHLTQALAQAQYAKSQQDNLMLMNQIAAQQMAALnkphnmalnghtptlipapspnalmppplnsksttiptnlpalpavptsggyfpqfqlpinmntahllqpmntpfffnmprmpvtpqvlpkfpvhqlnqtptvytiptpgnpvalcpLVQNIWLSLLLNTIPGYEQVLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKangedfinvaggnnnEAQAFLTRGAQVIIRMrglpyectAKQVIDFFEagtenscnvmdgeegvlfvkkpdgkatgdAFVLFEKEEEADKALSKHKESIGIRYIELFRSTTAEVQQVLNKTmelpknnsltssnnglsaqqpmlshlaqvpvpylpqhiitsgtrkdcirlrglpyeALCILMDIFfvgqqdsfvhkvpk
Flexible Loop (DISEMBL)
MKVPQYYCVFFVATAGLQGNLLGSDEQEIILLIYVIIDSYVNKVLITSQYKEPIQGFKKVLVEHILEFLGEFASNIVYQGVHMVYNSQGQPSGEAFIQMDSEHSAYLAAQLRHNRNMIFGKKQRYIEVFQCSGEDMNLVLNGVLPPTSPAISPVGKTLLSPGMLPHSSQPLYPQHNTQINPGLSHLDPLVNVHLTQALAQAQYAKSQQDNLMLMNQIAAQQMAALNKPHNMALNGHTPTLIPAPSPNALMPPPLNSKSTTIPTNLPALPAVPTSGGYFPQFQLPINMNTAHLLQPMNTPFFFNMPRMPVTPQVLPKFPVHQLNQTPTVYTIPTPGNPVALCPLVQNIWLSLLLNTIPGYEQVLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGEDFINVAGGNNNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALSKHKESIGIRYIELFRSTTAEVQQVLNKTMELPKNNSLTSSNNGLSAQQPMLSHLAQVPVPYLPQHIITSGTRKDCIRLRGLPYEALCILMDIFFVGQQDSFVHKVPK
Low Complexity Region (SEG)
MKVPQYYCVFFVATAGLQGNLLGSDEQEIILLIYVIIDSYVNKVLITSQYKEPIQGFKKVLVEHILEFLGEFASNIVYQGVHMVYNSQGQPSGEAFIQMDSEHSAYLAAQLRHNRNMIFGKKQRYIEVFQCSGEDMNLVLNGVLPPTSPAISPVGKTLLSPGMLPHSSQPLYPQHNTQINPGLSHLDPLVNVHLTQALAQAQYAKSQQDNLMLMNQIAAQQMAALNKPHNMALNGHTPTLIpapspnalmppplnsKSTTIPTNLPALPAVPTSGGYFPQFQLPINMNTAHLLQPMNTPFFFNMPRMPVTPQVLPKFPVHQLNQTPTVYTIPTPGNPVALCPLVQNIWLSLLLNTIPGYEQVLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGEDFINVAGGNNNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALSKHKESIGIRYIELFRSTTAEVQQVLNKTMELPKnnsltssnnglsAQQPMLSHLAQVPVPYLPQHIITSGTRKDCIRLRGLPYEALCILMDIFFVGQQDSFVHKVPK
Disordered region (IsUnstruct)
****QYYCVFFVATAGLQGNLLGSDEQEIILLIYVIIDSYVNKVLITSQYKEPIQGFKKVLVEHILEFLGEFASNIVYQGVHMVYNS*******AFIQMDSEHSAYLAAQLRHNRNMIFGKKQRYIEVFQCSGEDMNLVLNGVLP*************************************LSHLDPLVNVHLTQALAQAQYA*******MLM******************************************************PAVPTSGGYFPQFQLPINMNTAHLLQPMNTPFFFNMPRMPVTPQVLPKFPVHQLNQTPTVYTIPTPGNPVALCPLVQNIWLSLLLNTIPGYEQVLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGEDFINVAGGNNNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFE**************SIGIRYIELFRSTTAEVQQV****************************HLAQVPVPYLPQHIITSGTRKDCIRLRGLPYEALCILMDIFFVGQQDSFV*****
Disordered Region (DISOPRED)
****QYYCVFFVATAGLQ*****SDEQEIILLIYVIIDSYVN********KEPIQGFKKVLVEHILEFLGEFASNIVYQGVHMVYNSQGQPSGEAFIQMDSEHSAYLAAQLRHNRNMIFGKKQRYIEVFQCSGEDMNL*******************************************GLSHLDPLVNVHLTQALA******************************************************************************************************************************************VALCPLVQNIWLSLLLNTIPGYEQVLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGEDFINV******************IIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALSKHKESIGIRYIELFRST*******************************************************KDCIRLRGLPYEALCILMDIFFVGQQDSFVHKVPK
Disordered Region (DISEMBL)
MKVPQYYCVFFVATAGLQGNLLGSDEQEIILLIYVIIDSYVNKVLITSQYKEPIQGFKKVLVEHILEFLGEFASNIVYQGVHMVYNSQGQPSGEAFIQMDSEHSAYLAAQLRHNRNMIFGKKQRYIEVFQCSGEDMNLVLNGVLPPTSPAISPVGKTLLSPGMLPHSSQPLYPQHNTQINPGLSHLDPLVNVHLTQALAQAQYAKSQQDNLMLMNQIAAQQMAALNKPHNMALNGHTPTLIPAPSPNALMPPPLNSKSTTIPTNLPALPAVPTSGGYFPQFQLPINMNTAHLLQPMNTPFFFNMPRMPVTPQVLPKFPVHQLNQTPTVYTIPTPGNPVALCPLVQNIWLSLLLNTIPGYEQVLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGEDFINVAGGNNNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEE*********KESIGIRYIELFRSTTAEVQQVLNKTMELPKNNSLTSSNNGLSAQQPMLSHLAQVPVPYLPQHIITSGTRKDCIRLRGLPYEALCILMDIFFVGQQDSFVHKVPK
Disordered Region (DISPRO)
*KVPQYYCVFFVATAGLQGNLLGSDEQEIILLIYVIIDSYVNKVLITSQYKEPIQGFKKVLVEHILEFLGEFASNIVYQGVHMVYNSQGQPSGEAFIQMDSEHSAYLAAQLRHNRNMIFGKKQRYIEVFQCSGEDMNLVLNGVLPPTSPAISPVGKTLLSPGMLPHSSQPLYPQHNTQINPGLSHLDPLVNVHLTQALAQAQYAKSQQDNLMLMNQIAAQQMAALNKPHNMALNGHTPTLIPAPSPNALMPPPLNSKSTTIPTNLPALPAVPTSGGYFPQFQLPINMNTAHLLQPMNTPFFFNMPRMPVTPQVLPKFPVHQLNQT*TVYTIPTPGNPVALCPLVQNIWLSLLLNTIPGYEQVLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGEDFINVAGGNNN**QAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALSKHKESIGIRYIELFRSTTAEVQQVLNKTM******************************************RKDCIRLRGLPYEALCILMDIFFVGQQDSFVHKV**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKVPQYYCVFFVATAGLQGNLLGSDEQEIILLIYVIIDSYVNKVLITSQYKEPIQGFKKVLVEHILEFLGEFASNIVYQGVHMVYNSQGQPSGEAFIQMDSEHSAYLAAQLRHNRNMIFGKKQRYIEVFQCSGEDMNLVLNGVLPPTSPAISPVGKTLLSPGMLPHSSQPLYPQHNTQINPGLSHLDPLVNVHLTQALAQAQYAKSQQDNLMLMNQIAAQQMAALNKPHNMALNGHTPTLIPAPSPNALMPPPLNSKSTTIPTNLPALPAVPTSGGYFPQFQLPINMNTAHLLQPMNTPFFFNMPRMPVTPQVLPKFPVHQLNQTPTVYTIPTPGNPVALCPLVQNIWLSLLLNTIPGYEQVLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGEDFINVAGGNNNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALSKHKESIGIRYIELFRSTTAEVQQVLNKTMELPKNNSLTSSNNGLSAQQPMLSHLAQVPVPYLPQHIITSGTRKDCIRLRGLPYEALCILMDIFFVGQQDSFVHKVPK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	612	2.2.26 [Sep-21-2011]
Q9BJZ5	967	RNA-binding protein fusil	no	N/A	0.361	0.228	0.607	2e-84
A1L1G1	714	Epithelial splicing regul	yes	N/A	0.357	0.306	0.554	2e-65
Q7ZVR8	736	Epithelial splicing regul	no	N/A	0.361	0.300	0.560	1e-64
B2RYD2	677	Epithelial splicing regul	yes	N/A	0.348	0.314	0.527	9e-63
Q3US41	680	Epithelial splicing regul	yes	N/A	0.349	0.314	0.537	2e-61
Q6NXG1	681	Epithelial splicing regul	yes	N/A	0.349	0.314	0.533	5e-61
Q6DEZ7	687	Epithelial splicing regul	yes	N/A	0.349	0.311	0.542	2e-60
Q7ZY29	688	Epithelial splicing regul	N/A	N/A	0.349	0.311	0.542	2e-60
Q5ZLR4	701	Epithelial splicing regul	yes	N/A	0.334	0.292	0.537	3e-60
Q9H6T0	727	Epithelial splicing regul	no	N/A	0.346	0.291	0.512	4e-57

>sp|Q9BJZ5|FUSIL_DROME RNA-binding protein fusilli OS=Drosophila melanogaster GN=fus PE=2 SV=1

 Score =  313 bits (802), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 156/257 (60%), Positives = 187/257 (72%), Gaps = 36/257 (14%)

Query: 366 GGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGEDFINVAGGN 425
           GGVALCLS  GRRNGEA++RF+ QEHRDMALKRHKHHI  RYIEV +A+GEDF+ +AGG 
Sbjct: 307 GGVALCLSPLGRRNGEALIRFVCQEHRDMALKRHKHHIGTRYIEVYRASGEDFLAIAGGA 366

Query: 426 NNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGK 485
           +NEAQAFL++GAQVIIRMRGLPY+ TAKQV+DFF  G    C+V+DG EGVLFVKKPDG+
Sbjct: 367 SNEAQAFLSKGAQVIIRMRGLPYDATAKQVLDFFTTGDTPPCHVLDGNEGVLFVKKPDGR 426

Query: 486 ATGDAFVLFEKEEEADKALSKHKESIGIRYIELFRSTTAEVQQVLNKTMELPKNNSLTSS 545
           ATGDAFVLF  E +A KAL +H+ESIG RYIELFRSTTAEVQQVLN++M+ PKN      
Sbjct: 427 ATGDAFVLFANETDAPKALGRHRESIGQRYIELFRSTTAEVQQVLNRSMD-PKN----YE 481

Query: 546 NNGLSAQQPMLSHLAQVPVPYLPQ-------------------------------HIITS 574
           + G  +Q P+++ L  + +P LPQ                               H+ITS
Sbjct: 482 SGGGHSQPPLIAQLPTMQLPLLPQVGAHSLSHSLGASPANLCPPVPPPALPLPTQHLITS 541

Query: 575 GTRKDCIRLRGLPYEAL 591
           GT K+CIRLRGLPYEA+
Sbjct: 542 GTTKNCIRLRGLPYEAM 558

mRNA splicing factor that regulates alternative splicing od specific genes. Has a maternal role in embryonic dorsal-ventral patterning; such role is probably indirect and due to its function as mRNA splicing factor regulator.
Drosophila melanogaster (taxid: 7227)

>sp|A1L1G1|ESRP1_DANRE Epithelial splicing regulatory protein 1 OS=Danio rerio GN=esrp1 PE=2 SV=1

 Score =  251 bits (640), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 132/238 (55%), Positives = 164/238 (68%), Gaps = 19/238 (7%)

Query: 366 GGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGEDFINVAGGN 425
           GG ALCL+A GRRNGEA+VRF  +EHRD+AL+RHKHH+  RYIEV KA GEDF+ +AGG 
Sbjct: 253 GGAALCLNAQGRRNGEALVRFESEEHRDLALQRHKHHMGGRYIEVYKATGEDFLKIAGGT 312

Query: 426 NNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGK 485
           +NE  +FL+R  Q+I+RMRGLP+  TA+QV+ FF      +C V DG EG+LFV+ PDG+
Sbjct: 313 SNEVASFLSRENQIIVRMRGLPFNATAEQVLQFFSP----ACPVTDGSEGILFVRFPDGR 368

Query: 486 ATGDAFVLFEKEEEADKALSKHKESIGIRYIELFRSTTAEVQQVLNKTMELPKNNSLTSS 545
            TGDAFVLF  EE A  AL KHK+ +G RYIELF+ST AEVQQVLNK    P        
Sbjct: 369 PTGDAFVLFSCEEHAQNALKKHKDMLGKRYIELFKSTAAEVQQVLNKYSSAPLIP----- 423

Query: 546 NNGLSAQQPMLSHLAQVPVPYLPQHIITSGTRKDCIRLRGLPYEALCILMDIF-FVGQ 602
                A  P+LS +A  P  ++PQ     G R DC+RLRGLPY+A   + DI  F+G+
Sbjct: 424 ----VAPSPILSVVA--PPTFVPQTAAVPGVR-DCVRLRGLPYDA--SIQDILVFLGE 472

mRNA splicing factor that regulates the formation of epithelial cell-specific isoforms. Specifically regulates the expression of FGFR2-IIIb, an epithelial cell-specific isoform of fgfr2. Acts by directly binding specific sequences in mRNAs. Binds the GU-rich sequence motifs in the ISE/ISS-3, a cis-element regulatory region present in the mRNA of fgfr2.

Danio rerio (taxid: 7955)

>sp|Q7ZVR8|ESRP2_DANRE Epithelial splicing regulatory protein 2 OS=Danio rerio GN=esrp2 PE=2 SV=2

 Score =  248 bits (633), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 134/239 (56%), Positives = 160/239 (66%), Gaps = 18/239 (7%)

Query: 366 GGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGEDFINVAGGN 425
           GGVALCL+A GRRNGEA+VRFI+ EHRDMAL RHKHH+  RYIEV KA GE+F+ +AGG 
Sbjct: 252 GGVALCLNAQGRRNGEALVRFINSEHRDMALDRHKHHMGSRYIEVYKATGEEFLKIAGGT 311

Query: 426 NNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGK 485
           +NE   FL++  Q+IIRMRGLP+  T + V+ F   G E  C V DG EG+LFVK PDG+
Sbjct: 312 SNEVAQFLSKENQMIIRMRGLPFTATPQDVLGFL--GPE--CPVTDGTEGLLFVKYPDGR 367

Query: 486 ATGDAFVLFEKEEEADKALSKHKESIGIRYIELFRSTTAEVQQVLNKTMELPKNNSLTSS 545
            TGDAFVLF  EE A  AL KHK+ +G RYIELFRST AEVQQVLN+ M  P    L S+
Sbjct: 368 PTGDAFVLFACEEYAQNALKKHKQILGKRYIELFRSTAAEVQQVLNRYMSTP----LIST 423

Query: 546 NNGLSAQQPMLSHLAQVPVPYLPQHIITSGTRKDCIRLRGLPYEALCILMDIF-FVGQQ 603
                     +  LA  P        IT+G  +DCIRLRGLPY A   + DI  F+G+ 
Sbjct: 424 LPPPPPPMVSVPVLATPP-------FITTGNTRDCIRLRGLPYTA--AIEDILEFMGEH 473

mRNA splicing factor that regulates the formation of epithelial cell-specific isoforms. Specifically regulates the expression of FGFR2-IIIb, an epithelial cell-specific isoform of fgfr2. Acts by directly binding specific sequences in mRNAs. Binds the GU-rich sequence motifs in the ISE/ISS-3, a cis-element regulatory region present in the mRNA of fgfr2.

Danio rerio (taxid: 7955)

>sp|B2RYD2|ESRP1_RAT Epithelial splicing regulatory protein 1 OS=Rattus norvegicus GN=Esrp1 PE=2 SV=2

 Score =  241 bits (616), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 126/239 (52%), Positives = 157/239 (65%), Gaps = 26/239 (10%)

Query: 366 GGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGEDFINVAGGN 425
           GG ALCL+A GRRNGEA+VRF+ +EHRD+AL+RHKHH+  RYIEV KA GEDF+ +AGG 
Sbjct: 253 GGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKATGEDFLKIAGGT 312

Query: 426 NNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGK 485
           +NE   FL++  QVI+RMRGLP+  TA++V+ FF       C +  G+EG+LFV  PDG+
Sbjct: 313 SNEVAQFLSKENQVIVRMRGLPFTATAEEVVAFF----GQHCPITGGKEGILFVTYPDGR 368

Query: 486 ATGDAFVLFEKEEEADKALSKHKESIGIRYIELFRSTTAEVQQVLNKTMELPKNNSLTSS 545
            TGDAFVLF  EE A  AL KHK+ +G RYIELFRST AEVQQVLN+    P        
Sbjct: 369 PTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAP-------- 420

Query: 546 NNGLSAQQPMLSHLAQVP-VPYLPQHIITSGTRKDCIRLRGLPYEALCILMDIF-FVGQ 602
                     L  L   P +P LPQ  +     +DC+RLRGLPY A   + DI  F+G+
Sbjct: 421 ----------LIPLPTAPIIPVLPQQFVPPTNVRDCVRLRGLPYAA--TIEDILDFLGE 467

mRNA splicing factor that regulates the formation of epithelial cell-specific isoforms. Specifically regulates the expression of FGFR2-IIIb, an epithelial cell-specific isoform of FGFR2. Also regulates the splicing of CD44, CTNND1, ENAH, 3 transcripts that undergo changes in splicing during the epithelial-to-mesenchymal transition (EMT). Acts by directly binding specific sequences in mRNAs. Binds the GU-rich sequence motifs in the ISE/ISS-3, a cis-element regulatory region present in the mRNA of FGFR2.

Rattus norvegicus (taxid: 10116)

>sp|Q3US41|ESRP1_MOUSE Epithelial splicing regulatory protein 1 OS=Mus musculus GN=Esrp1 PE=2 SV=2

 Score =  237 bits (605), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 128/238 (53%), Positives = 157/238 (65%), Gaps = 24/238 (10%)

Query: 366 GGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGEDFINVAGGN 425
           GG ALCL+A GRRNGEA+VRF+ +EHRD+AL+RHKHH+  RYIEV KA GEDF+ +AGG 
Sbjct: 252 GGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKATGEDFLKIAGGT 311

Query: 426 NNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGK 485
           +NE   FL++  QVI+RMRGLP+  TA++V+ FF       C +  G+EG+LFV  PDG+
Sbjct: 312 SNEVAQFLSKENQVIVRMRGLPFTATAEEVVAFF----GQHCPITGGKEGILFVTYPDGR 367

Query: 486 ATGDAFVLFEKEEEADKALSKHKESIGIRYIELFRSTTAEVQQVLNKTMELPKNNSLTSS 545
            TGDAFVLF  EE A  AL KHKE +G RYIELFRST AEVQQVLN+             
Sbjct: 368 PTGDAFVLFACEEYAQNALRKHKELLGKRYIELFRSTAAEVQQVLNRFS----------- 416

Query: 546 NNGLSAQQPMLSHLAQVPVPYLPQHIITSGTRKDCIRLRGLPYEALCILMDIF-FVGQ 602
               SA    L     +PV  LPQ  +     +DCIRLRGLPY A   + DI  F+G+
Sbjct: 417 ----SAPLIPLPTPPIIPV--LPQQFVPPTNVRDCIRLRGLPYAA--TIEDILDFLGE 466

mRNA splicing factor that regulates the formation of epithelial cell-specific isoforms. Specifically regulates the expression of FGFR2-IIIb, an epithelial cell-specific isoform of FGFR2. Also regulates the splicing of CD44, CTNND1, ENAH, 3 transcripts that undergo changes in splicing during the epithelial-to-mesenchymal transition (EMT). Acts by directly binding specific sequences in mRNAs. Binds the GU-rich sequence motifs in the ISE/ISS-3, a cis-element regulatory region present in the mRNA of FGFR2.

Mus musculus (taxid: 10090)

>sp|Q6NXG1|ESRP1_HUMAN Epithelial splicing regulatory protein 1 OS=Homo sapiens GN=ESRP1 PE=1 SV=2

 Score =  236 bits (601), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 127/238 (53%), Positives = 157/238 (65%), Gaps = 24/238 (10%)

Query: 366 GGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGEDFINVAGGN 425
           GG ALCL+A GRRNGEA+VRF+ +EHRD+AL+RHKHH+  RYIEV KA GEDF+ +AGG 
Sbjct: 253 GGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKATGEDFLKIAGGT 312

Query: 426 NNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGK 485
           +NE   FL++  QVI+RMRGLP+  TA++V+ FF       C +  G+EG+LFV  PDG+
Sbjct: 313 SNEVAQFLSKENQVIVRMRGLPFTATAEEVVAFF----GQHCPITGGKEGILFVTYPDGR 368

Query: 486 ATGDAFVLFEKEEEADKALSKHKESIGIRYIELFRSTTAEVQQVLNKTMELPKNNSLTSS 545
            TGDAFVLF  EE A  AL KHK+ +G RYIELFRST AEVQQVLN+             
Sbjct: 369 PTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEVQQVLNRFS----------- 417

Query: 546 NNGLSAQQPMLSHLAQVPVPYLPQHIITSGTRKDCIRLRGLPYEALCILMDIF-FVGQ 602
               SA    L     +PV  LPQ  +     +DCIRLRGLPY A   + DI  F+G+
Sbjct: 418 ----SAPLIPLPTPPIIPV--LPQQFVPPTNVRDCIRLRGLPYAA--TIEDILDFLGE 467

mRNA splicing factor that regulates the formation of epithelial cell-specific isoforms. Specifically regulates the expression of FGFR2-IIIb, an epithelial cell-specific isoform of FGFR2. Also regulates the splicing of CD44, CTNND1, ENAH, 3 transcripts that undergo changes in splicing during the epithelial-to-mesenchymal transition (EMT). Acts by directly binding specific sequences in mRNAs. Binds the GU-rich sequence motifs in the ISE/ISS-3, a cis-element regulatory region present in the mRNA of FGFR2.

Homo sapiens (taxid: 9606)

>sp|Q6DEZ7|ESRP1_XENTR Epithelial splicing regulatory protein 1 OS=Xenopus tropicalis GN=esrp1 PE=2 SV=1

 Score =  234 bits (596), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 129/238 (54%), Positives = 156/238 (65%), Gaps = 24/238 (10%)

Query: 366 GGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGEDFINVAGGN 425
           GG ALCL+A GRRNGEA+VRF+ +EHRD+AL+RHKHH+  RYIEV KA GEDF+ +AGG 
Sbjct: 254 GGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGNRYIEVYKATGEDFLKIAGGT 313

Query: 426 NNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGK 485
           +NE   FL++  QVI+RMRGLP+  TA++V+ FF       C V  G+EG+LFV  PD +
Sbjct: 314 SNEVAQFLSKENQVIVRMRGLPFTATAEEVLAFF----GQQCPVTGGKEGILFVTYPDNR 369

Query: 486 ATGDAFVLFEKEEEADKALSKHKESIGIRYIELFRSTTAEVQQVLNKTMELPKNNSLTSS 545
            TGDAFVLF  EE A  AL KHKE +G RYIELFRST AEVQQVLN+             
Sbjct: 370 PTGDAFVLFACEEYAQNALKKHKELLGKRYIELFRSTAAEVQQVLNRYS----------- 418

Query: 546 NNGLSAQQPMLSHLAQVPVPYLPQHIITSGTRKDCIRLRGLPYEALCILMDIF-FVGQ 602
               SA    L     +PV  LPQ  I     +DCIRLRGLPY A   + DI  F+G+
Sbjct: 419 ----SAPLIPLPTPPIIPV--LPQPFIPPVNVRDCIRLRGLPYAA--TIEDILEFLGE 468

mRNA splicing factor that regulates the formation of epithelial cell-specific isoforms. Specifically regulates the expression of FGFR2-IIIb, an epithelial cell-specific isoform of fgfr2. Acts by directly binding specific sequences in mRNAs. Binds the GU-rich sequence motifs in the ISE/ISS-3, a cis-element regulatory region present in the mRNA of fgfr2.

Xenopus tropicalis (taxid: 8364)

>sp|Q7ZY29|ESRP1_XENLA Epithelial splicing regulatory protein 1 OS=Xenopus laevis GN=esrp1 PE=2 SV=1

 Score =  233 bits (595), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 129/238 (54%), Positives = 156/238 (65%), Gaps = 24/238 (10%)

Query: 366 GGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGEDFINVAGGN 425
           GG ALCL+A GRRNGEA+VRF+ +EHRD+AL+RHKHH+  RYIEV KA GEDF+ +AGG 
Sbjct: 254 GGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGNRYIEVYKATGEDFLKIAGGT 313

Query: 426 NNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGK 485
           +NE   FL++  QVI+RMRGLP+  TA++V+ FF       C V  G+EG+LFV  PD +
Sbjct: 314 SNEVAQFLSKENQVIVRMRGLPFTATAEEVLAFF----GQQCPVTGGKEGILFVTYPDNR 369

Query: 486 ATGDAFVLFEKEEEADKALSKHKESIGIRYIELFRSTTAEVQQVLNKTMELPKNNSLTSS 545
            TGDAFVLF  EE A  AL KHKE +G RYIELFRST AEVQQVLN+             
Sbjct: 370 PTGDAFVLFACEEYAQNALKKHKELLGKRYIELFRSTAAEVQQVLNRYS----------- 418

Query: 546 NNGLSAQQPMLSHLAQVPVPYLPQHIITSGTRKDCIRLRGLPYEALCILMDIF-FVGQ 602
               SA    L     +PV  LPQ  I     +DCIRLRGLPY A   + DI  F+G+
Sbjct: 419 ----SAPLIPLPTPPIIPV--LPQPFIPPVNVRDCIRLRGLPYAA--TIEDILEFLGE 468

mRNA splicing factor that regulates the formation of epithelial cell-specific isoforms. Specifically regulates the expression of FGFR2-IIIb, an epithelial cell-specific isoform of fgfr2. Acts by directly binding specific sequences in mRNAs. Binds the GU-rich sequence motifs in the ISE/ISS-3, a cis-element regulatory region present in the mRNA of fgfr2.

Xenopus laevis (taxid: 8355)

>sp|Q5ZLR4|ESRP2_CHICK Epithelial splicing regulatory protein 2 OS=Gallus gallus GN=ESRP2 PE=2 SV=1

 Score =  233 bits (595), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 121/225 (53%), Positives = 151/225 (67%), Gaps = 20/225 (8%)

Query: 366 GGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGEDFINVAGGN 425
           GGVALCL+A GRRNGEA+VRF++ E RD+AL+RHKHH+  RYIEV KA GE+F+ +AGG 
Sbjct: 254 GGVALCLNAQGRRNGEALVRFVNSEQRDLALERHKHHMGSRYIEVYKATGEEFLKIAGGT 313

Query: 426 NNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGK 485
           +NE   FL++  QVIIRMRGLP+  T + V+ F   G E  C V  G+EG+LFVK PDG+
Sbjct: 314 SNEVAQFLSKENQVIIRMRGLPFTATQEDVLGFL--GPE--CPVTGGKEGLLFVKYPDGR 369

Query: 486 ATGDAFVLFEKEEEADKALSKHKESIGIRYIELFRSTTAEVQQVLNKTMELPKNNSLTSS 545
            TGDAFVLF  EE A  AL KHKE +G RYIELFRST AEVQQVLN+ M  P   +L + 
Sbjct: 370 PTGDAFVLFSCEEYAQNALKKHKEILGKRYIELFRSTAAEVQQVLNRYMSTPLIPTLPTP 429

Query: 546 NNGLSAQQPMLSHLAQVPVPYLPQHIITSGTRKDCIRLRGLPYEA 590
              +      ++                +G+ +DC+RLRGLPY A
Sbjct: 430 IIPVIPPPYTIA----------------TGSIRDCVRLRGLPYTA 458

mRNA splicing factor that regulates the formation of epithelial cell-specific isoforms. Specifically regulates the expression of FGFR2-IIIb, an epithelial cell-specific isoform of FGFR2. Acts by directly binding specific sequences in mRNAs. Binds the GU-rich sequence motifs in the ISE/ISS-3, a cis-element regulatory region present in the mRNA of FGFR2.

Gallus gallus (taxid: 9031)

>sp|Q9H6T0|ESRP2_HUMAN Epithelial splicing regulatory protein 2 OS=Homo sapiens GN=ESRP2 PE=1 SV=1

 Score =  223 bits (568), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 122/238 (51%), Positives = 152/238 (63%), Gaps = 26/238 (10%)

Query: 366 GGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGEDFINVAGGN 425
           GGVALCL+A GRRNGEA++RF+D E RD+AL+RHKHH+  RYIEV KA GE+F+ +AGG 
Sbjct: 285 GGVALCLNAQGRRNGEALIRFVDSEQRDLALQRHKHHMGVRYIEVYKATGEEFVKIAGGT 344

Query: 426 NNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGK 485
           + E   FL+R  QVI+R+RGLP+      V+ F   G E  C V  G EG+LFV+ PDG+
Sbjct: 345 SLEVARFLSREDQVILRLRGLPFSAGPTDVLGFL--GPE--CPVTGGTEGLLFVRHPDGR 400

Query: 486 ATGDAFVLFEKEEEADKALSKHKESIGIRYIELFRSTTAEVQQVLNKTMELPKNNSLTSS 545
            TGDAF LF  EE A  AL +HK  +G RYIELFRST AEVQQVLN+    P   +LT+ 
Sbjct: 401 PTGDAFALFACEELAQAALRRHKGMLGKRYIELFRSTAAEVQQVLNRYASGPLLPTLTAP 460

Query: 546 NNGLSAQQPMLSHLAQVPVPYLPQHIITSGTRKDCIRLRGLPYEALCILMDIF-FVGQ 602
                           +P P  P      GT +DC+RLRGLPY A   + DI  F+G+
Sbjct: 461 LL-------------PIPFPLAP------GTGRDCVRLRGLPYTA--TIEDILSFLGE 497

mRNA splicing factor that regulates the formation of epithelial cell-specific isoforms. Specifically regulates the expression of FGFR2-IIIb, an epithelial cell-specific isoform of FGFR2. Also regulates the splicing of CD44, CTNND1, ENAH, 3 transcripts that undergo changes in splicing during the epithelial-to-mesenchymal transition (EMT). Acts by directly binding specific sequences in mRNAs. Binds the GU-rich sequence motifs in the ISE/ISS-3, a cis-element regulatory region present in the mRNA of FGFR2.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	612
328716236	858	PREDICTED: RNA-binding protein fusilli-l	0.369	0.263	0.700	6e-91
312385573	1660	hypothetical protein AND_00606 [Anophele	0.351	0.129	0.724	1e-89
194756410	885	GF13378 [Drosophila ananassae] gi|190621	0.361	0.249	0.694	4e-89
170047639	677	conserved hypothetical protein [Culex qu	0.351	0.317	0.706	4e-88
281363439	860	fusilli, isoform G [Drosophila melanogas	0.361	0.256	0.690	3e-87
240849679	860	RE48185p [Drosophila melanogaster]	0.361	0.256	0.685	1e-86
195442063	864	GK17961 [Drosophila willistoni] gi|19416	0.359	0.254	0.637	6e-84
194882767	892	GG22342 [Drosophila erecta] gi|190658669	0.361	0.247	0.610	2e-83
158301007	861	AGAP011722-PA [Anopheles gambiae str. PE	0.366	0.260	0.642	6e-83
198461689	910	GA20896 [Drosophila pseudoobscura pseudo	0.367	0.247	0.639	6e-83

>gi|328716236|ref|XP_001946855.2| PREDICTED: RNA-binding protein fusilli-like [Acyrthosiphon pisum]

 Score =  341 bits (875), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 166/237 (70%), Positives = 190/237 (80%), Gaps = 11/237 (4%)

Query: 363 LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGEDFINVA 422
           +  GGVALCLSA GRRNGEA+VRF++QEHRDMA+KRHKHHI  RYIEV KANGEDFINVA
Sbjct: 291 IAKGGVALCLSAHGRRNGEAVVRFVNQEHRDMAMKRHKHHIGSRYIEVYKANGEDFINVA 350

Query: 423 GGNNNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP 482
           GGN++EAQ FLT+GAQVI+RMRGLPY+CTAK VI FFE G E +C+VMDGE+GVLFVKKP
Sbjct: 351 GGNSSEAQTFLTKGAQVIVRMRGLPYDCTAKDVITFFENG-EQTCSVMDGEDGVLFVKKP 409

Query: 483 DGKATGDAFVLFEKEEEADKALSKHKESIGIRYIELFRSTTAEVQQVLNKTMELPKNNSL 542
           DG+ATGDAFVLF  E++A KALSKH++ IG RYIELFRSTTAEVQQVLN+ M+ P   S 
Sbjct: 410 DGRATGDAFVLFADEDDAPKALSKHRDLIGTRYIELFRSTTAEVQQVLNRAMD-PSVRST 468

Query: 543 TSSNNG---------LSAQQPMLSHLAQVPVPYLPQHIITSGTRKDCIRLRGLPYEA 590
            S +NG                 + L  VP+  LPQH+ITSGTRKDCIRLRGLPYEA
Sbjct: 469 ASDSNGNITTPVTTTAGVNNSPTALLGHVPLLPLPQHVITSGTRKDCIRLRGLPYEA 525

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312385573|gb|EFR30037.1| hypothetical protein AND_00606 [Anopheles darlingi]

 Score =  337 bits (863), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 163/225 (72%), Positives = 189/225 (84%), Gaps = 10/225 (4%)

Query: 366 GGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGEDFINVAGGN 425
           GGVALCLS  GRRNGEA+VRF+ QEHRDMALKRHKHHI  RYIEV +ANGEDF++VAGG 
Sbjct: 273 GGVALCLSPQGRRNGEALVRFVSQEHRDMALKRHKHHIGSRYIEVYRANGEDFLSVAGGA 332

Query: 426 NNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGK 485
           +NEAQAFLT+GAQVIIRMRGLPY+CTAKQV+DFF  G ENSCNV+DG +G+LFVKKPDG+
Sbjct: 333 SNEAQAFLTKGAQVIIRMRGLPYDCTAKQVLDFFANG-ENSCNVLDGADGILFVKKPDGR 391

Query: 486 ATGDAFVLFEKEEEADKALSKHKESIGIRYIELFRSTTAEVQQVLNKTMELPKNNSLTSS 545
           ATGDAFVLFE+E + +KALSKH+E IG RYIELFRSTTAEVQQVLN++M+ PK       
Sbjct: 392 ATGDAFVLFEQESDVNKALSKHRELIGQRYIELFRSTTAEVQQVLNRSMD-PKTYE---- 446

Query: 546 NNGLSAQQPMLSHLAQVPVPYLPQHIITSGTRKDCIRLRGLPYEA 590
                 Q P+++ L QV +  LPQH+ITSGT K+CIRLRGLPYEA
Sbjct: 447 ----PPQPPLIAQLPQVQMQLLPQHVITSGTEKNCIRLRGLPYEA 487

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194756410|ref|XP_001960472.1| GF13378 [Drosophila ananassae] gi|190621770|gb|EDV37294.1| GF13378 [Drosophila ananassae]

 Score =  335 bits (859), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 157/226 (69%), Positives = 188/226 (83%), Gaps = 5/226 (2%)

Query: 366 GGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGEDFINVAGGN 425
           GGVALCLS  GRRNGEA++RFI QEHRDMALKRHKHHI  RYIEV +A+GEDF+ +AGG 
Sbjct: 310 GGVALCLSPLGRRNGEALIRFISQEHRDMALKRHKHHIGTRYIEVYRASGEDFLAIAGGA 369

Query: 426 NNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGK 485
           +NEAQAFL++GAQVIIRMRGLPY+CTAKQV+DFF  G    C+V+DG EGVLFVKKPDG+
Sbjct: 370 SNEAQAFLSKGAQVIIRMRGLPYDCTAKQVLDFFTTGDTAPCHVLDGNEGVLFVKKPDGR 429

Query: 486 ATGDAFVLFEKEEEADKALSKHKESIGIRYIELFRSTTAEVQQVLNKTMELPKNNSLTSS 545
           ATGDAFVLF  E +A KAL +H+ESIG RYIELFRSTTAEVQQVLN++M+ PKN      
Sbjct: 430 ATGDAFVLFAHESDAAKALGRHRESIGQRYIELFRSTTAEVQQVLNRSMD-PKNY----E 484

Query: 546 NNGLSAQQPMLSHLAQVPVPYLPQHIITSGTRKDCIRLRGLPYEAL 591
           + G  +Q P+++ L  + +P LPQH+ITSGT ++CIRLRGLPYEA+
Sbjct: 485 SGGNHSQPPLIAQLPTMQLPLLPQHLITSGTTRNCIRLRGLPYEAM 530

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170047639|ref|XP_001851321.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167870002|gb|EDS33385.1| conserved hypothetical protein [Culex quinquefasciatus]

 Score =  332 bits (851), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 159/225 (70%), Positives = 186/225 (82%), Gaps = 10/225 (4%)

Query: 366 GGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGEDFINVAGGN 425
           GGVALCLS  GRRNGEA+VRF+ QEHRDMALKRHKHHI  RYIEV +A+GEDF+ VAGG 
Sbjct: 73  GGVALCLSPQGRRNGEALVRFVSQEHRDMALKRHKHHISNRYIEVYRASGEDFLAVAGGA 132

Query: 426 NNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGK 485
           +NEAQAFL++GAQVIIRMRGLPY+CTAKQV++FF  G E SC V+DG +G+LFVKKPDG+
Sbjct: 133 SNEAQAFLSKGAQVIIRMRGLPYDCTAKQVLEFFANG-ETSCTVLDGADGILFVKKPDGR 191

Query: 486 ATGDAFVLFEKEEEADKALSKHKESIGIRYIELFRSTTAEVQQVLNKTMELPKNNSLTSS 545
           ATGDAFVLF +E +A KALSKH+ESIG RYIELFRSTTAEVQQVLN++M+ PK       
Sbjct: 192 ATGDAFVLFAQESDASKALSKHRESIGQRYIELFRSTTAEVQQVLNRSMD-PKTYE---- 246

Query: 546 NNGLSAQQPMLSHLAQVPVPYLPQHIITSGTRKDCIRLRGLPYEA 590
                 Q P+++ L  V +P LPQH+ITSGT K+CIRLRGLPYEA
Sbjct: 247 ----PPQPPLIAALPPVQMPLLPQHVITSGTEKNCIRLRGLPYEA 287

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|281363439|ref|NP_001163161.1| fusilli, isoform G [Drosophila melanogaster] gi|272432494|gb|ACZ94433.1| fusilli, isoform G [Drosophila melanogaster]

 Score =  329 bits (843), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 156/226 (69%), Positives = 187/226 (82%), Gaps = 5/226 (2%)

Query: 366 GGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGEDFINVAGGN 425
           GGVALCLS  GRRNGEA++RF+ QEHRDMALKRHKHHI  RYIEV +A+GEDF+ +AGG 
Sbjct: 307 GGVALCLSPLGRRNGEALIRFVCQEHRDMALKRHKHHIGTRYIEVYRASGEDFLAIAGGA 366

Query: 426 NNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGK 485
           +NEAQAFL++GAQVIIRMRGLPY+ TAKQV+DFF  G    C+V+DG EGVLFVKKPDG+
Sbjct: 367 SNEAQAFLSKGAQVIIRMRGLPYDATAKQVLDFFTTGDTPPCHVLDGNEGVLFVKKPDGR 426

Query: 486 ATGDAFVLFEKEEEADKALSKHKESIGIRYIELFRSTTAEVQQVLNKTMELPKNNSLTSS 545
           ATGDAFVLF  E +A KAL +H+ESIG RYIELFRSTTAEVQQVLN++M+ PKN      
Sbjct: 427 ATGDAFVLFANETDAPKALGRHRESIGQRYIELFRSTTAEVQQVLNRSMD-PKN----YE 481

Query: 546 NNGLSAQQPMLSHLAQVPVPYLPQHIITSGTRKDCIRLRGLPYEAL 591
           + G  +Q P+++ L  + +P LPQH+ITSGT K+CIRLRGLPYEA+
Sbjct: 482 SGGGHSQPPLIAQLPTMQLPLLPQHLITSGTTKNCIRLRGLPYEAM 527

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|240849679|gb|ACS54296.1| RE48185p [Drosophila melanogaster]

 Score =  327 bits (839), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 155/226 (68%), Positives = 187/226 (82%), Gaps = 5/226 (2%)

Query: 366 GGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGEDFINVAGGN 425
           GGVALCLS  GRRNGEA++RF+ QEHRDMALKRHKHHI  RYIEV +A+GEDF+ +AGG 
Sbjct: 307 GGVALCLSPLGRRNGEALIRFVCQEHRDMALKRHKHHIGTRYIEVYRASGEDFLAIAGGA 366

Query: 426 NNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGK 485
           +NEAQAFL++GAQVIIRMRGLPY+ TAKQV+DFF  G    C+V+DG EGVLFV+KPDG+
Sbjct: 367 SNEAQAFLSKGAQVIIRMRGLPYDATAKQVLDFFTTGDAPPCHVLDGNEGVLFVEKPDGR 426

Query: 486 ATGDAFVLFEKEEEADKALSKHKESIGIRYIELFRSTTAEVQQVLNKTMELPKNNSLTSS 545
           ATGDAFVLF  E +A KAL +H+ESIG RYIELFRSTTAEVQQVLN++M+ PKN      
Sbjct: 427 ATGDAFVLFANETDAPKALGRHRESIGQRYIELFRSTTAEVQQVLNRSMD-PKN----YE 481

Query: 546 NNGLSAQQPMLSHLAQVPVPYLPQHIITSGTRKDCIRLRGLPYEAL 591
           + G  +Q P+++ L  + +P LPQH+ITSGT K+CIRLRGLPYEA+
Sbjct: 482 SGGGHSQPPLIAQLPTMQLPLLPQHLITSGTTKNCIRLRGLPYEAM 527

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195442063|ref|XP_002068780.1| GK17961 [Drosophila willistoni] gi|194164865|gb|EDW79766.1| GK17961 [Drosophila willistoni]

 Score =  318 bits (814), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 158/248 (63%), Positives = 190/248 (76%), Gaps = 28/248 (11%)

Query: 366 GGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGEDFINVAGGN 425
           GGVALCLS  GRRNGEA++RF+ QEHRDMALKRHKHHI  RYIEV +A+GEDF+ +AGG 
Sbjct: 322 GGVALCLSPLGRRNGEALIRFVSQEHRDMALKRHKHHIGARYIEVYRASGEDFLAIAGGA 381

Query: 426 NNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGK 485
           +NEAQAFL++GAQVIIRMRGLPY+CTAKQV+DFF  G ++ C+V+DG EGVLFVKKPDG+
Sbjct: 382 SNEAQAFLSKGAQVIIRMRGLPYDCTAKQVLDFFTTG-DSPCSVLDGTEGVLFVKKPDGR 440

Query: 486 ATGDAFVLFEKEEEADKALSKHKESIGIRYIELFRSTTAEVQQVLNKTMELPKNNSLTSS 545
           ATGDAFVLF  E +A KAL +H+ESIG RYIELFRSTTAEVQQVLN++M+ PK    T  
Sbjct: 441 ATGDAFVLFALEADAPKALGRHRESIGQRYIELFRSTTAEVQQVLNRSMD-PK----TYE 495

Query: 546 NNGLSAQQPMLSHLAQVPVPYL----------------------PQHIITSGTRKDCIRL 583
            N   +Q P+++ L Q+ +P L                      PQH+ITSGT K+CIRL
Sbjct: 496 ANNSHSQPPLIAQLPQMQLPLLPQVGAIAIAGHGHANPLCPIPPPQHLITSGTIKNCIRL 555

Query: 584 RGLPYEAL 591
           RGLPYEA+
Sbjct: 556 RGLPYEAM 563

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194882767|ref|XP_001975482.1| GG22342 [Drosophila erecta] gi|190658669|gb|EDV55882.1| GG22342 [Drosophila erecta]

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 157/257 (61%), Positives = 188/257 (73%), Gaps = 36/257 (14%)

Query: 366 GGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGEDFINVAGGN 425
           GGVALCLS  GRRNGEA++RF+ QEHRDMALKRHKHHI  RYIEV +A+GEDF+ +AGG 
Sbjct: 307 GGVALCLSPLGRRNGEALIRFVCQEHRDMALKRHKHHIGTRYIEVYRASGEDFLAIAGGA 366

Query: 426 NNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGK 485
           +NEAQAFL++GAQVIIRMRGLPY+ TAKQV+DFF AG    C+V+DG EGVLFVKKPDG+
Sbjct: 367 SNEAQAFLSKGAQVIIRMRGLPYDATAKQVLDFFTAGDTPPCHVLDGNEGVLFVKKPDGR 426

Query: 486 ATGDAFVLFEKEEEADKALSKHKESIGIRYIELFRSTTAEVQQVLNKTMELPKNNSLTSS 545
           ATGDAFVLF  E +A KAL +H+ESIG RYIELFRSTTAEVQQVLN++M+ PKN      
Sbjct: 427 ATGDAFVLFAHESDASKALCRHRESIGQRYIELFRSTTAEVQQVLNRSMD-PKNYE---- 481

Query: 546 NNGLSAQQPMLSHLAQVPVPYLPQ-------------------------------HIITS 574
           + G  +Q P+++ L  + +P LPQ                               H+ITS
Sbjct: 482 SGGGHSQPPLIAQLPTMQLPLLPQVGAHSLSHSLGASPANLCPPVPPPALPLPTQHLITS 541

Query: 575 GTRKDCIRLRGLPYEAL 591
           GT K+CIRLRGLPYEA+
Sbjct: 542 GTTKNCIRLRGLPYEAM 558

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158301007|ref|XP_320791.4| AGAP011722-PA [Anopheles gambiae str. PEST] gi|157013433|gb|EAA00060.4| AGAP011722-PA [Anopheles gambiae str. PEST]

 Score =  315 bits (806), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 160/249 (64%), Positives = 188/249 (75%), Gaps = 25/249 (10%)

Query: 366 GGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGEDFINVAGGN 425
           GGVALCLS  GRRNGEA+VRF+ QEHRDMALKRHKHHI  RYIEV +ANGEDF+ VAGG 
Sbjct: 233 GGVALCLSPQGRRNGEALVRFVSQEHRDMALKRHKHHIGNRYIEVYRANGEDFLAVAGGA 292

Query: 426 NNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGK 485
           +NEAQAFL++GAQVIIRMRGLPY+CTAKQV+DFF  G ENSCNV+DG +G+LFVKKPDG+
Sbjct: 293 SNEAQAFLSKGAQVIIRMRGLPYDCTAKQVLDFFANG-ENSCNVLDGADGILFVKKPDGR 351

Query: 486 ATGDAFVLFEKEEEADKALSKHKESIGIRYIELFRSTTAEVQQVLNKTMELPK------- 538
           ATGDAFVLFE++ +A KALSKH+ESIG RYIELFRSTTAEVQQV    + + +       
Sbjct: 352 ATGDAFVLFEQDSDASKALSKHRESIGQRYIELFRSTTAEVQQVCTSLVSVCRVFAQQKN 411

Query: 539 --NNSLT--------------SSNNGLSAQQPMLSHLAQVP-VPYLPQHIITSGTRKDCI 581
              N LT               S +  + + P    +AQ+P +  LPQH+ITSG  K+CI
Sbjct: 412 SPTNRLTLLINVVKHPPQVLNRSMDPKTYEPPQPPLIAQLPQMQLLPQHVITSGVEKNCI 471

Query: 582 RLRGLPYEA 590
           RLRGLPYEA
Sbjct: 472 RLRGLPYEA 480

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198461689|ref|XP_001362087.2| GA20896 [Drosophila pseudoobscura pseudoobscura] gi|198137420|gb|EAL26667.2| GA20896 [Drosophila pseudoobscura pseudoobscura]

 Score =  315 bits (806), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 158/247 (63%), Positives = 186/247 (75%), Gaps = 22/247 (8%)

Query: 366 GGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGEDFINVAGGN 425
           GGVALCLS  GRRNGEA++RF+ QEHRDMALKRHKHHI  RYIEV +A+GEDF+ +AGG 
Sbjct: 326 GGVALCLSPLGRRNGEALIRFVSQEHRDMALKRHKHHIGARYIEVYRASGEDFLAIAGGA 385

Query: 426 NNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGK 485
           +NEAQAFL++GAQVIIRMRGLPY+CTAKQV++FF  G E  C+V+D  EGVLFVKKPDG+
Sbjct: 386 SNEAQAFLSKGAQVIIRMRGLPYDCTAKQVLEFFTTG-EAPCHVLDANEGVLFVKKPDGR 444

Query: 486 ATGDAFVLFEKEEEADKALSKHKESIGIRYIELFRSTTAEVQQVLNKTMELPKNNSLTSS 545
           ATGDAFVLF  E +A KAL +H+ESIG RYIELFRSTTAEVQQVLN++M+     + + S
Sbjct: 445 ATGDAFVLFANEGDAPKALGRHRESIGQRYIELFRSTTAEVQQVLNRSMDPKTFETSSHS 504

Query: 546 NNGLSAQQPM--LSHLAQV-------------------PVPYLPQHIITSGTRKDCIRLR 584
              L AQ P   L  L QV                   P P+ PQH+ITSGT K+CIRLR
Sbjct: 505 QPPLIAQLPTMQLPLLPQVGVVTHGNGRVPVPVPANLCPHPHPPQHLITSGTTKNCIRLR 564

Query: 585 GLPYEAL 591
           GLPYEA+
Sbjct: 565 GLPYEAM 571

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	612
FB|FBgn0023441	967	fus "fusilli" [Drosophila mela	0.325	0.205	0.666	2.6e-89
ZFIN|ZDB-GENE-030131-9824	736	esrp2 "epithelial splicing reg	0.343	0.285	0.591	2.6e-72
UNIPROTKB|F1RY52	711	ESRP1 "Uncharacterized protein	0.274	0.236	0.616	5.8e-69
MGI|MGI:1917326	680	Esrp1 "epithelial splicing reg	0.274	0.247	0.622	7.4e-69
RGD|1560481	677	Esrp1 "epithelial splicing reg	0.274	0.248	0.616	1.5e-68
UNIPROTKB|F1LP81	681	Esrp1 "Epithelial-splicing reg	0.274	0.246	0.616	1.5e-68
ZFIN|ZDB-GENE-070112-1732	714	esrp1 "epithelial splicing reg	0.341	0.292	0.568	1.8e-68
UNIPROTKB|F1MVN3	677	ESRP1 "Uncharacterized protein	0.274	0.248	0.616	1.9e-68
UNIPROTKB|Q6DEZ7	687	esrp1 "Epithelial splicing reg	0.274	0.244	0.622	2.5e-68
UNIPROTKB|Q7ZY29	688	esrp1 "Epithelial splicing reg	0.274	0.244	0.622	2.5e-68

FB|FBgn0023441 fus "fusilli" [Drosophila melanogaster (taxid:7227)]

 Score = 697 (250.4 bits), Expect = 2.6e-89, Sum P(3) = 2.6e-89
 Identities = 136/204 (66%), Positives = 163/204 (79%)

Query:   366 GGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGEDFINVAGGN 425
             GGVALCLS  GRRNGEA++RF+ QEHRDMALKRHKHHI  RYIEV +A+GEDF+ +AGG 
Sbjct:   307 GGVALCLSPLGRRNGEALIRFVCQEHRDMALKRHKHHIGTRYIEVYRASGEDFLAIAGGA 366

Query:   426 NNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGK 485
             +NEAQAFL++GAQVIIRMRGLPY+ TAKQV+DFF  G    C+V+DG EGVLFVKKPDG+
Sbjct:   367 SNEAQAFLSKGAQVIIRMRGLPYDATAKQVLDFFTTGDTPPCHVLDGNEGVLFVKKPDGR 426

Query:   486 ATGDAFVLFEKEEEADKALSKHKESIGIRYIELFRSTTAEVQQVLNKTMELPKXXXXXXX 545
             ATGDAFVLF  E +A KAL +H+ESIG RYIELFRSTTAEVQQVLN++M+ PK       
Sbjct:   427 ATGDAFVLFANETDAPKALGRHRESIGQRYIELFRSTTAEVQQVLNRSMD-PKNYESGGG 485

Query:   546 XXXXXAQQPMLSHLAQVPVPYLPQ 569
                  +Q P+++ L  + +P LPQ
Sbjct:   486 H----SQPPLIAQLPTMQLPLLPQ 505

GO:0003729 "mRNA binding" evidence=ISS;NAS

GO:0007173 "epidermal growth factor receptor signaling pathway" evidence=IGI

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

ZFIN|ZDB-GENE-030131-9824 esrp2 "epithelial splicing regulatory protein 2" [Danio rerio (taxid:7955)]

 Score = 610 (219.8 bits), Expect = 2.6e-72, Sum P(3) = 2.6e-72
 Identities = 133/225 (59%), Positives = 153/225 (68%)

Query:   366 GGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGEDFINVAGGN 425
             GGVALCL+A GRRNGEA+VRFI+ EHRDMAL RHKHH+  RYIEV KA GE+F+ +AGG 
Sbjct:   252 GGVALCLNAQGRRNGEALVRFINSEHRDMALDRHKHHMGSRYIEVYKATGEEFLKIAGGT 311

Query:   426 NNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGK 485
             +NE   FL++  Q+IIRMRGLP+  T + V+ F   G E  C V DG EG+LFVK PDG+
Sbjct:   312 SNEVAQFLSKENQMIIRMRGLPFTATPQDVLGFL--GPE--CPVTDGTEGLLFVKYPDGR 367

Query:   486 ATGDAFVLFEKEEEADKALSKHKESIGIRYIELFRSTTAEVQQVLNKTMELPKXXXXXXX 545
              TGDAFVLF  EE A  AL KHK+ +G RYIELFRST AEVQQVLN+ M  P        
Sbjct:   368 PTGDAFVLFACEEYAQNALKKHKQILGKRYIELFRSTAAEVQQVLNRYMSTP------LI 421

Query:   546 XXXXXAQQPMLSHLAQVPVPYLPQHIITSGTRKDCIRLRGLPYEA 590
                     PM+S    VPV   P  I T  TR DCIRLRGLPY A
Sbjct:   422 STLPPPPPPMVS----VPVLATPPFITTGNTR-DCIRLRGLPYTA 461

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003729 "mRNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=IEA;ISS

GO:0043484 "regulation of RNA splicing" evidence=ISS

GO:0006397 "mRNA processing" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

UNIPROTKB|F1RY52 ESRP1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 543 (196.2 bits), Expect = 5.8e-69, Sum P(3) = 5.8e-69
 Identities = 106/172 (61%), Positives = 129/172 (75%)

Query:   366 GGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGEDFINVAGGN 425
             GG ALCL+A GRRNGEA+VRF+ +EHRD+AL+RHKHH+  RYIEV KA GEDF+ +AGG 
Sbjct:   283 GGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKATGEDFLKIAGGT 342

Query:   426 NNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGK 485
             +NE   FL++  QVI+RMRGLP+  TA +V+ FF  G    C +  G+EG+LFV  PDG+
Sbjct:   343 SNEVAQFLSKENQVIVRMRGLPFTATADEVVAFF--GQH--CPITGGKEGILFVTYPDGR 398

Query:   486 ATGDAFVLFEKEEEADKALSKHKESIGIRYIELFRSTTAEVQQVLNKTMELP 537
              TGDAFVLF  EE A  AL KHK+ +G RYIELFRST AEVQQVLN+    P
Sbjct:   399 PTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAP 450

GO:0043484 "regulation of RNA splicing" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003729 "mRNA binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

MGI|MGI:1917326 Esrp1 "epithelial splicing regulatory protein 1" [Mus musculus (taxid:10090)]

 Score = 548 (198.0 bits), Expect = 7.4e-69, Sum P(3) = 7.4e-69
 Identities = 107/172 (62%), Positives = 130/172 (75%)

Query:   366 GGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGEDFINVAGGN 425
             GG ALCL+A GRRNGEA+VRF+ +EHRD+AL+RHKHH+  RYIEV KA GEDF+ +AGG 
Sbjct:   252 GGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKATGEDFLKIAGGT 311

Query:   426 NNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGK 485
             +NE   FL++  QVI+RMRGLP+  TA++V+ FF  G    C +  G+EG+LFV  PDG+
Sbjct:   312 SNEVAQFLSKENQVIVRMRGLPFTATAEEVVAFF--GQH--CPITGGKEGILFVTYPDGR 367

Query:   486 ATGDAFVLFEKEEEADKALSKHKESIGIRYIELFRSTTAEVQQVLNKTMELP 537
              TGDAFVLF  EE A  AL KHKE +G RYIELFRST AEVQQVLN+    P
Sbjct:   368 PTGDAFVLFACEEYAQNALRKHKELLGKRYIELFRSTAAEVQQVLNRFSSAP 419

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0003729 "mRNA binding" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0006397 "mRNA processing" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0043484 "regulation of RNA splicing" evidence=ISO

RGD|1560481 Esrp1 "epithelial splicing regulatory protein 1" [Rattus norvegicus (taxid:10116)]

 Score = 545 (196.9 bits), Expect = 1.5e-68, Sum P(3) = 1.5e-68
 Identities = 106/172 (61%), Positives = 130/172 (75%)

Query:   366 GGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGEDFINVAGGN 425
             GG ALCL+A GRRNGEA+VRF+ +EHRD+AL+RHKHH+  RYIEV KA GEDF+ +AGG 
Sbjct:   253 GGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKATGEDFLKIAGGT 312

Query:   426 NNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGK 485
             +NE   FL++  QVI+RMRGLP+  TA++V+ FF  G    C +  G+EG+LFV  PDG+
Sbjct:   313 SNEVAQFLSKENQVIVRMRGLPFTATAEEVVAFF--GQH--CPITGGKEGILFVTYPDGR 368

Query:   486 ATGDAFVLFEKEEEADKALSKHKESIGIRYIELFRSTTAEVQQVLNKTMELP 537
              TGDAFVLF  EE A  AL KHK+ +G RYIELFRST AEVQQVLN+    P
Sbjct:   369 PTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAP 420

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003729 "mRNA binding" evidence=IEA;ISO;ISS

GO:0005634 "nucleus" evidence=IEA;ISO;ISS

GO:0005886 "plasma membrane" evidence=IEA;ISO

GO:0006397 "mRNA processing" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0043484 "regulation of RNA splicing" evidence=IEA;ISO;ISS

GO:0005730 "nucleolus" evidence=ISO

UNIPROTKB|F1LP81 Esrp1 "Epithelial-splicing regulatory protein 1" [Rattus norvegicus (taxid:10116)]

 Score = 545 (196.9 bits), Expect = 1.5e-68, Sum P(3) = 1.5e-68
 Identities = 106/172 (61%), Positives = 130/172 (75%)

Query:   366 GGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGEDFINVAGGN 425
             GG ALCL+A GRRNGEA+VRF+ +EHRD+AL+RHKHH+  RYIEV KA GEDF+ +AGG 
Sbjct:   253 GGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKATGEDFLKIAGGT 312

Query:   426 NNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGK 485
             +NE   FL++  QVI+RMRGLP+  TA++V+ FF  G    C +  G+EG+LFV  PDG+
Sbjct:   313 SNEVAQFLSKENQVIVRMRGLPFTATAEEVVAFF--GQH--CPITGGKEGILFVTYPDGR 368

Query:   486 ATGDAFVLFEKEEEADKALSKHKESIGIRYIELFRSTTAEVQQVLNKTMELP 537
              TGDAFVLF  EE A  AL KHK+ +G RYIELFRST AEVQQVLN+    P
Sbjct:   369 PTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAP 420

GO:0000166 "nucleotide binding" evidence=IEA

ZFIN|ZDB-GENE-070112-1732 esrp1 "epithelial splicing regulatory protein 1" [Danio rerio (taxid:7955)]

 Score = 622 (224.0 bits), Expect = 1.8e-68, Sum P(2) = 1.8e-68
 Identities = 128/225 (56%), Positives = 157/225 (69%)

Query:   366 GGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGEDFINVAGGN 425
             GG ALCL+A GRRNGEA+VRF  +EHRD+AL+RHKHH+  RYIEV KA GEDF+ +AGG 
Sbjct:   253 GGAALCLNAQGRRNGEALVRFESEEHRDLALQRHKHHMGGRYIEVYKATGEDFLKIAGGT 312

Query:   426 NNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGK 485
             +NE  +FL+R  Q+I+RMRGLP+  TA+QV+ FF      +C V DG EG+LFV+ PDG+
Sbjct:   313 SNEVASFLSRENQIIVRMRGLPFNATAEQVLQFFSP----ACPVTDGSEGILFVRFPDGR 368

Query:   486 ATGDAFVLFEKEEEADKALSKHKESIGIRYIELFRSTTAEVQQVLNKTMELPKXXXXXXX 545
              TGDAFVLF  EE A  AL KHK+ +G RYIELF+ST AEVQQVLNK    P        
Sbjct:   369 PTGDAFVLFSCEEHAQNALKKHKDMLGKRYIELFKSTAAEVQQVLNKYSSAP-------- 420

Query:   546 XXXXXAQQPMLSHLAQVPVPYLPQHIITSGTRKDCIRLRGLPYEA 590
                  A  P+LS +A  P  ++PQ     G R DC+RLRGLPY+A
Sbjct:   421 -LIPVAPSPILSVVA--PPTFVPQTAAVPGVR-DCVRLRGLPYDA 461

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0043484 "regulation of RNA splicing" evidence=ISS

GO:0003729 "mRNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=IEA;ISS

GO:0003723 "RNA binding" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

UNIPROTKB|F1MVN3 ESRP1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 544 (196.6 bits), Expect = 1.9e-68, Sum P(3) = 1.9e-68
 Identities = 106/172 (61%), Positives = 129/172 (75%)

Query:   366 GGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGEDFINVAGGN 425
             GG ALCL+A GRRNGEA+VRF+ +EHRD+AL+RHKHH+  RYIEV KA GEDF+ +AGG 
Sbjct:   253 GGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGSRYIEVYKATGEDFLKIAGGT 312

Query:   426 NNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGK 485
             +NE   FL++  QVI+RMRGLP+  TA +V+ FF  G    C +  G+EG+LFV  PDG+
Sbjct:   313 SNEVAQFLSKENQVIVRMRGLPFTATADEVVAFF--GQH--CPITGGKEGILFVTYPDGR 368

Query:   486 ATGDAFVLFEKEEEADKALSKHKESIGIRYIELFRSTTAEVQQVLNKTMELP 537
              TGDAFVLF  EE A  AL KHK+ +G RYIELFRST AEVQQVLN+    P
Sbjct:   369 PTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAP 420

GO:0043484 "regulation of RNA splicing" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003729 "mRNA binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|Q6DEZ7 esrp1 "Epithelial splicing regulatory protein 1" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 546 (197.3 bits), Expect = 2.5e-68, Sum P(3) = 2.5e-68
 Identities = 107/172 (62%), Positives = 130/172 (75%)

Query:   366 GGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGEDFINVAGGN 425
             GG ALCL+A GRRNGEA+VRF+ +EHRD+AL+RHKHH+  RYIEV KA GEDF+ +AGG 
Sbjct:   254 GGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGNRYIEVYKATGEDFLKIAGGT 313

Query:   426 NNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGK 485
             +NE   FL++  QVI+RMRGLP+  TA++V+ FF  G +  C V  G+EG+LFV  PD +
Sbjct:   314 SNEVAQFLSKENQVIVRMRGLPFTATAEEVLAFF--GQQ--CPVTGGKEGILFVTYPDNR 369

Query:   486 ATGDAFVLFEKEEEADKALSKHKESIGIRYIELFRSTTAEVQQVLNKTMELP 537
              TGDAFVLF  EE A  AL KHKE +G RYIELFRST AEVQQVLN+    P
Sbjct:   370 PTGDAFVLFACEEYAQNALKKHKELLGKRYIELFRSTAAEVQQVLNRYSSAP 421

GO:0003729 "mRNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0043484 "regulation of RNA splicing" evidence=ISS

UNIPROTKB|Q7ZY29 esrp1 "Epithelial splicing regulatory protein 1" [Xenopus laevis (taxid:8355)]

 Score = 546 (197.3 bits), Expect = 2.5e-68, Sum P(3) = 2.5e-68
 Identities = 107/172 (62%), Positives = 130/172 (75%)

Query:   366 GGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGEDFINVAGGN 425
             GG ALCL+A GRRNGEA+VRF+ +EHRD+AL+RHKHH+  RYIEV KA GEDF+ +AGG 
Sbjct:   254 GGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGNRYIEVYKATGEDFLKIAGGT 313

Query:   426 NNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGK 485
             +NE   FL++  QVI+RMRGLP+  TA++V+ FF  G +  C V  G+EG+LFV  PD +
Sbjct:   314 SNEVAQFLSKENQVIVRMRGLPFTATAEEVLAFF--GQQ--CPVTGGKEGILFVTYPDNR 369

Query:   486 ATGDAFVLFEKEEEADKALSKHKESIGIRYIELFRSTTAEVQQVLNKTMELP 537
              TGDAFVLF  EE A  AL KHKE +G RYIELFRST AEVQQVLN+    P
Sbjct:   370 PTGDAFVLFACEEYAQNALKKHKELLGKRYIELFRSTAAEVQQVLNRYSSAP 421

GO:0003729 "mRNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0043484 "regulation of RNA splicing" evidence=ISS

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	612
cd12741	100	cd12741, RRM2_Fusilli, RNA recognition motif 2 in	2e-57
cd12743	85	cd12743, RRM3_Fusilli, RNA recognition motif 3 in	2e-41
cd12508	80	cd12508, RRM2_ESRPs_Fusilli, RNA recognition motif	1e-39
cd12740	107	cd12740, RRM2_ESRP2, RNA recognition motif 2 in ep	4e-37
cd12739	109	cd12739, RRM2_ESRP1, RNA recognition motif 2 in ep	7e-37
cd12509	81	cd12509, RRM3_ESRPs_Fusilli, RNA recognition motif	1e-29
cd12738	80	cd12738, RRM1_Fusilli, RNA recognition motif 1 in	1e-27
cd12742	81	cd12742, RRM3_ESRP1_ESRP2, RNA recognition motif i	7e-26
cd12507	75	cd12507, RRM1_ESRPs_Fusilli, RNA recognition motif	1e-24
cd12503	77	cd12503, RRM1_hnRNPH_GRSF1_like, RNA recognition m	1e-24
cd12736	85	cd12736, RRM1_ESRP1, RNA recognition motif 1 in ep	2e-24
cd12504	77	cd12504, RRM2_hnRNPH_like, RNA recognition motif 2	4e-24
cd12737	80	cd12737, RRM1_ESRP2, RNA recognition motif 1 in ep	2e-23
cd12254	73	cd12254, RRM_hnRNPH_ESRPs_RBM12_like, RNA recognit	7e-23
cd12730	79	cd12730, RRM1_GRSF1, RNA recognition motif 1 in G-	9e-21
cd12505	75	cd12505, RRM2_GRSF1, RNA recognition motif 2 in G-	1e-20
cd12731	83	cd12731, RRM2_hnRNPH_hnRNPH2_hnRNPF, RNA recogniti	2e-19
cd12729	79	cd12729, RRM1_hnRNPH_hnRNPH2_hnRNPF, RNA recogniti	2e-18
cd12732	96	cd12732, RRM2_hnRNPH3, RNA recognition motif 2 in	9e-17
cd12506	75	cd12506, RRM3_hnRNPH_CRSF1_like, RNA recognition m	1e-14
cd12502	72	cd12502, RRM2_RMB19, RNA recognition motif 2 in RN	5e-14
cd12507	75	cd12507, RRM1_ESRPs_Fusilli, RNA recognition motif	3e-13
cd12738	80	cd12738, RRM1_Fusilli, RNA recognition motif 1 in	5e-13
cd12254	73	cd12254, RRM_hnRNPH_ESRPs_RBM12_like, RNA recognit	8e-13
cd12746	78	cd12746, RRM2_RBM12B, RNA recognition motif 2 in R	1e-12
cd12737	80	cd12737, RRM1_ESRP2, RNA recognition motif 1 in ep	4e-12
cd12512	101	cd12512, RRM3_RBM12, RNA recognition motif 3 in RN	2e-11
cd12505	75	cd12505, RRM2_GRSF1, RNA recognition motif 2 in G-	3e-11
cd12736	85	cd12736, RRM1_ESRP1, RNA recognition motif 1 in ep	4e-11
cd12509	81	cd12509, RRM3_ESRPs_Fusilli, RNA recognition motif	5e-11
cd12503	77	cd12503, RRM1_hnRNPH_GRSF1_like, RNA recognition m	6e-11
cd12254	73	cd12254, RRM_hnRNPH_ESRPs_RBM12_like, RNA recognit	1e-10
cd12508	80	cd12508, RRM2_ESRPs_Fusilli, RNA recognition motif	1e-09
cd12511	73	cd12511, RRM2_RBM12_like, RNA recognition motif 2	3e-09
cd12735	75	cd12735, RRM3_hnRNPH3, RNA recognition motif 3 in	5e-09
cd12742	81	cd12742, RRM3_ESRP1_ESRP2, RNA recognition motif i	8e-09
cd12734	76	cd12734, RRM3_hnRNPH_hnRNPH2_hnRNPF, RNA recogniti	9e-09
cd12503	77	cd12503, RRM1_hnRNPH_GRSF1_like, RNA recognition m	2e-08
cd12733	75	cd12733, RRM3_GRSF1, RNA recognition motif 3 in G-	2e-08
cd12729	79	cd12729, RRM1_hnRNPH_hnRNPH2_hnRNPF, RNA recogniti	6e-08
cd12508	80	cd12508, RRM2_ESRPs_Fusilli, RNA recognition motif	1e-07
cd12514	73	cd12514, RRM4_RBM12_like, RNA recognition motif 4	2e-07
smart00360	73	smart00360, RRM, RNA recognition motif	3e-07
pfam00076	70	pfam00076, RRM_1, RNA recognition motif	6e-07
cd12510	74	cd12510, RRM1_RBM12_like, RNA recognition motif 1	7e-07
cd00590	72	cd00590, RRM_SF, RNA recognition motif (RRM) super	7e-07
pfam14259	69	pfam14259, RRM_6, RNA recognition motif (a	8e-07
cd12730	79	cd12730, RRM1_GRSF1, RNA recognition motif 1 in G-	1e-06
cd12731	83	cd12731, RRM2_hnRNPH_hnRNPH2_hnRNPF, RNA recogniti	1e-06
cd12736	85	cd12736, RRM1_ESRP1, RNA recognition motif 1 in ep	2e-06
cd12744	79	cd12744, RRM1_RBM12B, RNA recognition motif 1 in R	2e-06
cd12505	75	cd12505, RRM2_GRSF1, RNA recognition motif 2 in G-	3e-06
cd12511	73	cd12511, RRM2_RBM12_like, RNA recognition motif 2	3e-06
cd12509	81	cd12509, RRM3_ESRPs_Fusilli, RNA recognition motif	7e-06
cd12507	75	cd12507, RRM1_ESRPs_Fusilli, RNA recognition motif	7e-06
cd12504	77	cd12504, RRM2_hnRNPH_like, RNA recognition motif 2	7e-06
cd12732	96	cd12732, RRM2_hnRNPH3, RNA recognition motif 2 in	9e-06
cd12391	72	cd12391, RRM1_SART3, RNA recognition motif 1 in sq	1e-05
cd12502	72	cd12502, RRM2_RMB19, RNA recognition motif 2 in RN	2e-05
cd12738	80	cd12738, RRM1_Fusilli, RNA recognition motif 1 in	3e-05
cd12384	76	cd12384, RRM_RBM24_RBM38_like, RNA recognition mot	3e-05
cd12504	77	cd12504, RRM2_hnRNPH_like, RNA recognition motif 2	4e-05
cd12746	78	cd12746, RRM2_RBM12B, RNA recognition motif 2 in R	4e-05
cd12514	73	cd12514, RRM4_RBM12_like, RNA recognition motif 4	4e-05
cd12737	80	cd12737, RRM1_ESRP2, RNA recognition motif 1 in ep	5e-05
cd12450	77	cd12450, RRM1_NUCLs, RNA recognition motif 1 found	5e-05
cd12743	85	cd12743, RRM3_Fusilli, RNA recognition motif 3 in	1e-04
cd12730	79	cd12730, RRM1_GRSF1, RNA recognition motif 1 in G-	1e-04
pfam14259	69	pfam14259, RRM_6, RNA recognition motif (a	1e-04
cd12506	75	cd12506, RRM3_hnRNPH_CRSF1_like, RNA recognition m	3e-04
cd12747	75	cd12747, RRM2_RBM12, RNA recognition motif 2 in RN	3e-04
cd12729	79	cd12729, RRM1_hnRNPH_hnRNPH2_hnRNPF, RNA recogniti	4e-04
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	4e-04
cd12291	72	cd12291, RRM1_La, RNA recognition motif 1 in La au	5e-04
cd12565	76	cd12565, RRM1_MRD1, RNA recognition motif 1 in yea	5e-04
cd12271	72	cd12271, RRM1_PHIP1, RNA recognition motif 1 in Ar	5e-04
cd12513	81	cd12513, RRM3_RBM12B, RNA recognition motif 3 in R	8e-04
cd12506	75	cd12506, RRM3_hnRNPH_CRSF1_like, RNA recognition m	0.002
cd12502	72	cd12502, RRM2_RMB19, RNA recognition motif 2 in RN	0.002
cd12413	79	cd12413, RRM1_RBM28_like, RNA recognition motif 1	0.002
cd12400	74	cd12400, RRM_Nop6, RNA recognition motif in Saccha	0.002
cd12414	76	cd12414, RRM2_RBM28_like, RNA recognition motif 2	0.002
cd12731	83	cd12731, RRM2_hnRNPH_hnRNPH2_hnRNPF, RNA recogniti	0.003
cd12395	73	cd12395, RRM2_RBM34, RNA recognition motif 2 in RN	0.003
COG0724	306	COG0724, COG0724, RNA-binding proteins (RRM domain	0.003
cd12740	107	cd12740, RRM2_ESRP2, RNA recognition motif 2 in ep	0.004

>gnl|CDD|241185 cd12741, RRM2_Fusilli, RNA recognition motif 2 in Drosophila RNA-binding protein Fusilli and similar proteins

 Score =  187 bits (477), Expect = 2e-57
 Identities = 76/100 (76%), Positives = 86/100 (86%)

Query: 422 AGGNNNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKK 481
           AGG NNEAQAFL+RG QVI+RMRGLPY+CTAKQV++FF  G    C+V+DG EGVLFVKK
Sbjct: 1   AGGANNEAQAFLSRGGQVIVRMRGLPYDCTAKQVLEFFTTGDTPPCHVLDGNEGVLFVKK 60

Query: 482 PDGKATGDAFVLFEKEEEADKALSKHKESIGIRYIELFRS 521
           PDG+ATGDAFVLF  EE+A KAL KH+ESIG RYIELFRS
Sbjct: 61  PDGRATGDAFVLFATEEDAPKALGKHRESIGSRYIELFRS 100

This subgroup corresponds to the RRM2 of RNA-binding protein Fusilli which is encoded by Drosophila fusilli (fus) gene. Loss of Fusilli activity causes lethality during embryogenesis in flies. Drosophila Fusilli can regulate endogenous fibroblast growth factor receptor 2 (FGFR2) splicing and functions as a splicing factor. Fusilli contains three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), an N-terminal domain with unknown function and a C-terminal domain particularly rich in alanine, glutamine, and serine. . Length = 100

>gnl|CDD|241187 cd12743, RRM3_Fusilli, RNA recognition motif 3 in Drosophila RNA-binding protein Fusilli and similar proteins

 Score =  144 bits (364), Expect = 2e-41
 Identities = 59/71 (83%), Positives = 63/71 (88%)

Query: 62  VEHILEFLGEFASNIVYQGVHMVYNSQGQPSGEAFIQMDSEHSAYLAAQLRHNRNMIFGK 121
           VEHILEFLG+FA  IV+QGVHMVYN+QGQPSGEAFIQMDSE SA   AQ RHNR M+FGK
Sbjct: 15  VEHILEFLGDFAKMIVFQGVHMVYNAQGQPSGEAFIQMDSEQSASACAQQRHNRYMVFGK 74

Query: 122 KQRYIEVFQCS 132
           KQRYIEVFQCS
Sbjct: 75  KQRYIEVFQCS 85

This subgroup corresponds to the RRM3 of RNA-binding protein Fusilli which is encoded by Drosophila fusilli (fus) gene. Loss of Fusilli activity causes lethality during embryogenesis in flies. Drosophila Fusilli can regulate endogenous fibroblast growth factor receptor 2 (FGFR2) splicing and functions as a splicing factor. Fusilli contains three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), an N-terminal domain with unknown function and a C-terminal domain particularly rich in alanine, glutamine, and serine. . Length = 85

>gnl|CDD|240952 cd12508, RRM2_ESRPs_Fusilli, RNA recognition motif 2 in epithelial splicing regulatory protein ESRP1, ESRP2, Drosophila RNA-binding protein Fusilli and similar proteins

 Score =  139 bits (352), Expect = 1e-39
 Identities = 52/84 (61%), Positives = 62/84 (73%), Gaps = 4/84 (4%)

Query: 438 QVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKE 497
           QVIIRMRGLPY  TA  ++ FF       C V+ G +G+LFV  PDG+ TGDAFVLFE E
Sbjct: 1   QVIIRMRGLPYSATAADILAFFGGL----CPVVGGPDGILFVTGPDGRPTGDAFVLFETE 56

Query: 498 EEADKALSKHKESIGIRYIELFRS 521
           E+A +AL KHKE++G RYIELFRS
Sbjct: 57  EDAQRALGKHKENLGSRYIELFRS 80

This subfamily corresponds to the RRM2 of ESRPs and Fusilli. ESRP1 (also termed RBM35A) and ESRP2 (also termed RBM35B) are epithelial-specific RNA binding proteins that promote splicing of the epithelial variant of the fibroblast growth factor receptor 2 (FGFR2), ENAH (also termed hMena), CD44 and CTNND1 (also termed p120-Catenin) transcripts. They are highly conserved paralogs and specifically bind to GU-rich binding site. ESRP1 and ESRP2 contain three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). The family also includes Drosophila fusilli (fus) gene encoding RNA-binding protein Fusilli.Loss of fusilli activity causes lethality during embryogenesis in flies. Drosophila Fusilli can regulate endogenous FGFR2 splicing and functions as a splicing factor. It shows high sequence homology to ESRPs and contains three RRMs as well. It also has an N-terminal domain with unknown function and a C-terminal domain particularly rich in alanine, glutamine, and serine. . Length = 80

>gnl|CDD|241184 cd12740, RRM2_ESRP2, RNA recognition motif 2 in epithelial splicing regulatory protein 2 (ESRP2) and similar proteins

 Score =  133 bits (336), Expect = 4e-37
 Identities = 67/110 (60%), Positives = 76/110 (69%), Gaps = 4/110 (3%)

Query: 423 GGNNNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP 482
           GG +NE   FL++  QVIIRMRGLP+  T   V+ F   G E  C V  G EG+LFVK P
Sbjct: 1   GGTSNEVAQFLSKENQVIIRMRGLPFTATPTDVLGFL--GPE--CPVTGGTEGLLFVKYP 56

Query: 483 DGKATGDAFVLFEKEEEADKALSKHKESIGIRYIELFRSTTAEVQQVLNK 532
           DG+ TGDAFVLF  EE A  AL KHK  +G RYIELFRST AEVQQVLN+
Sbjct: 57  DGRPTGDAFVLFACEEYAQNALKKHKGILGKRYIELFRSTAAEVQQVLNR 106

This subgroup corresponds to the RRM2 of ESRP2, also termed RNA-binding motif protein 35B (RBM35B), which has been identified as an epithelial cell type-specific regulator of fibroblast growth factor receptor 2 (FGFR2) splicing. It is required for expression of epithelial FGFR2-IIIb and the regulation of CD44, CTNND1 (also termed p120-Catenin) and ENAH (also termed hMena) splicing. It enhances epithelial-specific exons of CD44 and ENAH, silences mesenchymal exons of CTNND1, or both within FGFR2. ESRP2 contains three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). . Length = 107

>gnl|CDD|241183 cd12739, RRM2_ESRP1, RNA recognition motif 2 in epithelial splicing regulatory protein 1 (ESRP1) and similar proteins

 Score =  132 bits (334), Expect = 7e-37
 Identities = 64/110 (58%), Positives = 78/110 (70%), Gaps = 4/110 (3%)

Query: 423 GGNNNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP 482
           GG +NE   FL++  QVI+RMRGLP+  TA++V+ FF       C V  G+EG+LFV  P
Sbjct: 1   GGTSNEVAQFLSKENQVIVRMRGLPFTATAEEVLAFFG----QHCPVTGGKEGILFVTYP 56

Query: 483 DGKATGDAFVLFEKEEEADKALSKHKESIGIRYIELFRSTTAEVQQVLNK 532
           D + TGDAFVLF  EE A  AL KHK+ +G RYIELFRST AEVQQVLN+
Sbjct: 57  DSRPTGDAFVLFACEEYAQNALKKHKDLLGKRYIELFRSTAAEVQQVLNR 106

This subgroup corresponds to the RRM2 of ESRP1, also termed RNA-binding motif protein 35A (RBM35A), which has been identified as an epithelial cell type-specific regulator of fibroblast growth factor receptor 2 (FGFR2) splicing. It is required for expression of epithelial FGFR2-IIIb and the regulation of CD44, CTNND1 (also termed p120-Catenin) and ENAH (also termed hMena) splicing. It enhances epithelial-specific exons of CD44 and ENAH, silences mesenchymal exons of CTNND1, or both within FGFR2. Additional research indicated that ESRP1 functions as a tumor suppressor in colon cancer cells. It may be involved in posttranscriptional regulation of various genes by exerting a differential effect on protein translation via 5' untranslated regions (UTRs) of mRNAs. ESRP1 contains three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). . Length = 109

>gnl|CDD|240953 cd12509, RRM3_ESRPs_Fusilli, RNA recognition motif 3 in epithelial splicing regulatory protein ESRP1, ESRP2, Drosophila RNA-binding protein Fusilli and similar proteins

 Score =  111 bits (280), Expect = 1e-29
 Identities = 42/71 (59%), Positives = 48/71 (67%), Gaps = 4/71 (5%)

Query: 62  VEHILEFLGEFASNIVYQGVHMVYNSQGQPSGEAFIQMDSEHSAYLAAQLRHNRNMIFGK 121
           VE IL FLGE A +I  QGVHMV N+QG+PSG+AFIQM S   A  AA   H  +M    
Sbjct: 15  VEDILNFLGELARSIAPQGVHMVLNAQGRPSGDAFIQMLSAEFATRAANELHKHHM---- 70

Query: 122 KQRYIEVFQCS 132
            +RYIEVFQCS
Sbjct: 71  GERYIEVFQCS 81

This subfamily corresponds to the RRM3 of ESRPs and Fusilli. ESRP1 (also termed RBM35A) and ESRP2 (also termed RBM35B) are epithelial-specific RNA binding proteins that promote splicing of the epithelial variant of the fibroblast growth factor receptor 2 (FGFR2), ENAH (also termed hMena), CD44 and CTNND1 (also termed p120-Catenin) transcripts. They are highly conserved paralogs and specifically bind to GU-rich binding site. ESRP1 and ESRP2 contain three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). The family also includes Drosophila fusilli (fus) gene encoding RNA-binding protein Fusilli. Loss of fusilli activity causes lethality during embryogenesis in flies. Drosophila Fusilli can regulate endogenous FGFR2 splicing and functions as a splicing factor. Fusilli shows high sequence homology to ESRPs and contains three RRMs as well. It also has an N-terminal domain with unknown function and a C-terminal domain particularly rich in alanine, glutamine, and serine. . Length = 81

>gnl|CDD|241182 cd12738, RRM1_Fusilli, RNA recognition motif 1 in Drosophila RNA-binding protein Fusilli and similar proteins

 Score =  105 bits (264), Expect = 1e-27
 Identities = 41/56 (73%), Positives = 46/56 (82%)

Query: 363 LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGEDF 418
           +  GGVALCL+  GRRNGEA+VRF   EHRD+ALKRHKHHI +RYIEV KA GEDF
Sbjct: 25  IAKGGVALCLNPQGRRNGEALVRFTCTEHRDLALKRHKHHIGQRYIEVYKATGEDF 80

This subgroup corresponds to the RRM1 of RNA-binding protein Fusilli which is encoded by Drosophila fusilli (fus) gene. Loss of Fusilli activity causes lethality during embryogenesis in flies. Drosophila Fusilli can regulate endogenous fibroblast growth factor receptor 2 (FGFR2) splicing and functions as a splicing factor. Fusilli contains three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), an N-terminal domain with unknown function and a C-terminal domain particularly rich in alanine, glutamine, and serine. . Length = 80

>gnl|CDD|241186 cd12742, RRM3_ESRP1_ESRP2, RNA recognition motif in epithelial splicing regulatory protein ESRP1, ESRP2 and similar proteins

 Score =  101 bits (252), Expect = 7e-26
 Identities = 44/71 (61%), Positives = 52/71 (73%), Gaps = 4/71 (5%)

Query: 62  VEHILEFLGEFASNIVYQGVHMVYNSQGQPSGEAFIQMDSEHSAYLAAQLRHNRNMIFGK 121
           +E ILEFLGEFA++I   GVHMV N QG+PSG+AFIQM S   A+LAAQ  H + M    
Sbjct: 15  IEDILEFLGEFAADIRPHGVHMVLNQQGRPSGDAFIQMKSAERAFLAAQKCHKKMM---- 70

Query: 122 KQRYIEVFQCS 132
           K RY+EVFQCS
Sbjct: 71  KDRYVEVFQCS 81

This subgroup corresponds to the RRM3 of ESRP1 (also termed RBM35A) and ESRP2 (also termed RBM35B). These are epithelial-specific RNA binding proteins that promote splicing of the epithelial variant of the fibroblast growth factor receptor 2 (FGFR2), ENAH (also termed hMena), CD44 and CTNND1 (also termed p120-Catenin) transcripts. They are highly conserved paralogs and specifically bind to GU-rich binding site. ESRP1 and ESRP2 contain three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). . Length = 81

>gnl|CDD|240951 cd12507, RRM1_ESRPs_Fusilli, RNA recognition motif 1 in epithelial splicing regulatory protein ESRP1, ESRP2, Drosophila RNA-binding protein Fusilli and similar proteins

 Score = 97.2 bits (242), Expect = 1e-24
 Identities = 38/48 (79%), Positives = 44/48 (91%)

Query: 366 GGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKA 413
           GGVALCLSA GRRNGEA++RF+DQEHRD+AL+RHKHH+  RYIEV KA
Sbjct: 28  GGVALCLSAQGRRNGEALIRFVDQEHRDLALQRHKHHMGTRYIEVYKA 75

This subfamily corresponds to the RRM1 of ESRPs and Fusilli. ESRP1 (also termed RBM35A) and ESRP2 (also termed RBM35B). These are epithelial-specific RNA binding proteins that promote splicing of the epithelial variant of the fibroblast growth factor receptor 2 (FGFR2), ENAH (also termed hMena), CD44 and CTNND1 (also termed p120-Catenin) transcripts. They are highly conserved paralogs and specifically bind to GU-rich binding site. ESRP1 and ESRP2 contain three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). The family also includes Drosophila fusilli (fus) gene encoding RNA-binding protein Fusilli. Loss of fusilli activity causes lethality during embryogenesis in flies. Drosophila Fusilli can regulate endogenous fibroblast growth factor receptor 2 (FGFR2) splicing and functions as a splicing factor. It shows high sequence homology to ESRPs and contains three RRMs as well. It also has an N-terminal domain with unknown function and a C-terminal domain particularly rich in alanine, glutamine, and serine. . Length = 75

>gnl|CDD|240947 cd12503, RRM1_hnRNPH_GRSF1_like, RNA recognition motif 1 in heterogeneous nuclear ribonucleoprotein (hnRNP) H protein family, G-rich sequence factor 1 (GRSF-1) and similar proteins

 Score = 97.1 bits (242), Expect = 1e-24
 Identities = 36/82 (43%), Positives = 54/82 (65%), Gaps = 5/82 (6%)

Query: 440 IIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEE 499
           ++R+RGLP+  TA+ V++FF       C +  GE G+ F    +G+ +G+AF+  E EE+
Sbjct: 1   VVRIRGLPWSATAEDVLNFFS-----DCRIKGGENGIHFTYSREGRPSGEAFIELESEED 55

Query: 500 ADKALSKHKESIGIRYIELFRS 521
            +KAL KH E +G RYIE+FRS
Sbjct: 56  VEKALEKHNEHMGHRYIEVFRS 77

This subfamily corresponds to the RRM1 of hnRNP H proteins and GRSF-1. The hnRNP H protein family includes hnRNP H (also termed mcs94-1), hnRNP H2 (also termed FTP-3 or hnRNP H'), hnRNP F and hnRNP H3 (also termed hnRNP 2H9), which represent a group of nuclear RNA binding proteins that are involved in pre-mRNA processing. These proteins have similar RNA binding affinities and specifically recognize the sequence GGGA. They can either stimulate or repress splicing upon binding to a GGG motif. hnRNP H binds to the RNA substrate in the presence or absence of these proteins, whereas hnRNP F binds to the nuclear mRNA only in the presence of cap-binding proteins. hnRNP H and hnRNP H2 are almost identical; both have been found to bind nuclear-matrix proteins. hnRNP H activates exon inclusion by binding G-rich intronic elements downstream of the 5' splice site in the transcripts of c-src, human immunodeficiency virus type 1 (HIV-1), Bcl-X, GRIN1, and myelin. It silences exons when bound to exonic elements in the transcripts of beta-tropomyosin, HIV-1, and alpha-tropomyosin. hnRNP H2 has been implicated in pre-mRNA 3' end formation. hnRNP H3 may be involved in splicing arrest induced by heat shock. Most family members contain three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), except for hnRNP H3, in which the RRM1 is absent. RRM1 and RRM2 are responsible for the binding to the RNA at DGGGD motifs, and play an important role in efficiently silencing the exon. Members in this family can regulate the alternative splicing of fibroblast growth factor receptor 2 (FGFR2) transcripts, and function as silencers of FGFR2 exon IIIc through an interaction with the exonic GGG motifs. The lack of RRM1 could account for the reduced silencing activity within hnRNP H3. Members in this family have an extensive glycine-rich region near the C-terminus, which may allow them to homo- or heterodimerize. They also include a cytoplasmic poly(A)+ mRNA binding protein, GRSF-1, which interacts with RNA in a G-rich element-dependent manner. They may function in RNA packaging, stabilization of RNA secondary structure, or other macromolecular interactions. GRSF-1 contains three potential RRMs responsible for the RNA binding, and two auxiliary domains (an acidic alpha-helical domain and an N-terminal alanine-rich region) that may play a role in protein-protein interactions and provide binding specificity. . Length = 77

>gnl|CDD|241180 cd12736, RRM1_ESRP1, RNA recognition motif 1 in epithelial splicing regulatory protein 1 (ESRP1) and similar proteins

 Score = 96.6 bits (240), Expect = 2e-24
 Identities = 39/53 (73%), Positives = 46/53 (86%)

Query: 366 GGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGEDF 418
           GG ALCL+A GRRNGEA+VRF+ +EHRD+AL+RHKHH+  RYIEV KA GEDF
Sbjct: 33  GGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGNRYIEVYKATGEDF 85

This subgroup corresponds to the RRM1 of ESRP1, also termed RNA-binding motif protein 35A (RBM35A), which has been identified as an epithelial cell type-specific regulator of fibroblast growth factor receptor 2 (FGFR2) splicing. It is required for expression of epithelial FGFR2-IIIb and the regulation of CD44, CTNND1 (p120-Catenin) and ENAH (hMena) splicing. It enhances epithelial-specific exons of CD44 and ENAH, silences mesenchymal exons of CTNND1, or both within FGFR2. Additional research indicated that ESRP1 functions as a tumor suppressor in colon cancer cells. It may be involved in posttranscriptional regulation of various genes by exerting a differential effect on protein translation via 5' untranslated regions (UTRs) of mRNAs. ESRP1 contains three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). . Length = 85

>gnl|CDD|240948 cd12504, RRM2_hnRNPH_like, RNA recognition motif 2 in heterogeneous nuclear ribonucleoprotein (hnRNP) H protein family

 Score = 95.5 bits (238), Expect = 4e-24
 Identities = 35/83 (42%), Positives = 54/83 (65%), Gaps = 7/83 (8%)

Query: 440 IIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEE 499
           ++R+RGLP+ C+ +++  FF +G E   N      G+       G++TG+A+V F  +E 
Sbjct: 2   VVRLRGLPFGCSKEEIAQFF-SGLEIVPN------GITLPMDYRGRSTGEAYVQFASQES 54

Query: 500 ADKALSKHKESIGIRYIELFRST 522
           A++AL KHKE IG RYIE+FRS+
Sbjct: 55  AERALGKHKEKIGHRYIEIFRSS 77

This subfamily corresponds to the RRM2 of hnRNP H protein family which includes hnRNP H (also termed mcs94-1), hnRNP H2 (also termed FTP-3 or hnRNP H'), hnRNP F and hnRNP H3 (also termed hnRNP 2H9). They represent a group of nuclear RNA binding proteins that are involved in pre-mRNA processing, having similar RNA binding affinities and specifically recognizing the sequence GGGA. They can either stimulate or repress splicing upon binding to a GGG motif. hnRNP H binds to the RNA substrate in the presence or absence of these proteins, whereas hnRNP F binds to the nuclear mRNA only in the presence of cap-binding proteins. Furthermore, hnRNP H and hnRNP H2 are almost identical; both have been found to bind nuclear-matrix proteins. hnRNP H activates exon inclusion by binding G-rich intronic elements downstream of the 5' splice site in the transcripts of c-src, human immunodeficiency virus type 1 (HIV-1), Bcl-X, GRIN1, and myelin. It silences exons when bound to exonic elements in the transcripts of beta-tropomyosin, HIV-1, and alpha-tropomyosin. hnRNP H2 has been implicated in pre-mRNA 3' end formation. hnRNP H3 may be involved in the splicing arrest induced by heat shock. Most family members contain three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), except for hnRNP H3, in which the RRM1 is absent. RRM1 and RRM2 are responsible for the binding to the RNA at DGGGD motifs, and they play an important role in efficiently silencing the exon. Members in this family can regulate the alternative splicing of the fibroblast growth factor receptor 2 (FGFR2) transcripts, and function as silencers of FGFR2 exon IIIc through an interaction with the exonic GGG motifs. The lack of RRM1 could account for the reduced silencing activity within hnRNP H3. In addition, the family members have an extensive glycine-rich region near the C-terminus, which may allow them to homo- or heterodimerize. . Length = 77

>gnl|CDD|241181 cd12737, RRM1_ESRP2, RNA recognition motif 1 in epithelial splicing regulatory protein 2 (ESRP2) and similar proteins

 Score = 94.3 bits (234), Expect = 2e-23
 Identities = 38/53 (71%), Positives = 46/53 (86%)

Query: 366 GGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGEDF 418
           GGVALCL+A GRRNGEA+VRF++ E RD+AL+RHKHH+  RYIEV KA GE+F
Sbjct: 28  GGVALCLNAQGRRNGEALVRFVNSEQRDLALQRHKHHMGSRYIEVYKATGEEF 80

This subgroup corresponds to the RRM1 of ESRP2, also termed RNA-binding motif protein 35B (RBM35B), which has been identified as an epithelial cell type-specific regulator of fibroblast growth factor receptor 2 (FGFR2) splicing. It is required for expression of epithelial FGFR2-IIIb and the regulation of CD44, CTNND1 (also termed p120-Catenin) and ENAH (also termed hMena) splicing. It enhances epithelial-specific exons of CD44 and ENAH, silences mesenchymal exons of CTNND1, or both within FGFR2. ESRP2 contains three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). . Length = 80

>gnl|CDD|240700 cd12254, RRM_hnRNPH_ESRPs_RBM12_like, RNA recognition motif found in heterogeneous nuclear ribonucleoprotein (hnRNP) H protein family, epithelial splicing regulatory proteins (ESRPs), Drosophila RNA-binding protein Fusilli, RNA-binding protein 12 (RBM12) and similar proteins

 Score = 91.8 bits (229), Expect = 7e-23
 Identities = 30/80 (37%), Positives = 47/80 (58%), Gaps = 7/80 (8%)

Query: 440 IIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEE 499
           ++R+RGLP+  T + + DFF        ++    +G+  V   DG+ TG+A+V F   E+
Sbjct: 1   VVRLRGLPFSATEEDIRDFFS-----GLDI--PPDGIHIVYDDDGRPTGEAYVEFASPED 53

Query: 500 ADKALSKHKESIGIRYIELF 519
           A +AL KH   +G RYIE+F
Sbjct: 54  ARRALRKHNNKMGGRYIEVF 73

The family includes RRM domains in the hnRNP H protein family, G-rich sequence factor 1 (GRSF-1), ESRPs (also termed RBM35), Drosophila Fusilli, RBM12 (also termed SWAN), RBM12B, RBM19 (also termed RBD-1) and similar proteins. The hnRNP H protein family includes hnRNP H (also termed mcs94-1), hnRNP H2 (also termed FTP-3 or hnRNP H'), hnRNP F and hnRNP H3 (also termed hnRNP 2H9), which represent a group of nuclear RNA binding proteins that are involved in pre-mRNA processing. GRSF-1 is a cytoplasmic poly(A)+ mRNA binding protein which interacts with RNA in a G-rich element-dependent manner. It may function in RNA packaging, stabilization of RNA secondary structure, or other macromolecular interactions. ESRP1 (also termed RBM35A) and ESRP2 (also termed RBM35B) are epithelial-specific RNA binding proteins that promote splicing of the epithelial variant of fibroblast growth factor receptor 2 (FGFR2), ENAH (also termed hMena), CD44 and CTNND1 (also termed p120-Catenin) transcripts. Fusilli shows high sequence homology to ESRPs. It can regulate endogenous FGFR2 splicing and functions as a splicing factor. The biological roles of both, RBM12 and RBM12B, remain unclear. RBM19 is a nucleolar protein conserved in eukaryotes. It is involved in ribosome biogenesis by processing rRNA. In addition, it is essential for preimplantation development. Members in this family contain 2~6 conserved RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). . Length = 73

>gnl|CDD|241174 cd12730, RRM1_GRSF1, RNA recognition motif 1 in G-rich sequence factor 1 (GRSF-1) and similar proteins

 Score = 86.4 bits (214), Expect = 9e-21
 Identities = 34/80 (42%), Positives = 51/80 (63%), Gaps = 5/80 (6%)

Query: 440 IIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEE 499
           I+R +GLP+ CTA+ V++FF     + C + +GE GV F+   DGK  GDA +  E EE+
Sbjct: 3   IVRAKGLPWSCTAEDVMNFF-----DDCRIRNGENGVHFLLNRDGKPRGDALIELESEED 57

Query: 500 ADKALSKHKESIGIRYIELF 519
             KAL +H+  +G RY+E+ 
Sbjct: 58  VQKALEQHRHYMGQRYVEVR 77

This subgroup corresponds to the RRM1 of GRSF-1, a cytoplasmic poly(A)+ mRNA binding protein which interacts with RNA in a G-rich element-dependent manner. It may function in RNA packaging, stabilization of RNA secondary structure, or other macromolecular interactions. GRSF-1 contains three potential RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), which are responsible for the RNA binding. In addition, GRSF-1 has two auxiliary domains, an acidic alpha-helical domain and an N-terminal alanine-rich region, that may play a role in protein-protein interactions and provide binding specificity. . Length = 79

>gnl|CDD|240949 cd12505, RRM2_GRSF1, RNA recognition motif 2 in G-rich sequence factor 1 (GRSF-1) and similar proteins

 Score = 85.9 bits (213), Expect = 1e-20
 Identities = 37/80 (46%), Positives = 51/80 (63%), Gaps = 7/80 (8%)

Query: 440 IIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEE 499
           ++R+RGLPY CT   +IDFF  G +        ++GV+ V    G+ TG+A+V F   E 
Sbjct: 3   VVRLRGLPYSCTEDDIIDFF-RGLDI------VDDGVVIVLNRRGRKTGEAYVQFATPEM 55

Query: 500 ADKALSKHKESIGIRYIELF 519
           A+KAL KH+E IG RYIE+F
Sbjct: 56  ANKALLKHREEIGNRYIEVF 75

This subfamily corresponds to the RRM2 of GRSF-1, a cytoplasmic poly(A)+ mRNA binding protein which interacts with RNA in a G-rich element-dependent manner. It may function in RNA packaging, stabilization of RNA secondary structure, or other macromolecular interactions. GRSF-1 contains three potential RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), which are responsible for the RNA binding. In addition, GRSF-1 has two auxiliary domains, an acidic alpha-helical domain and an N-terminal alanine-rich region, that may play a role in protein-protein interactions and provide binding specificity. . Length = 75

>gnl|CDD|241175 cd12731, RRM2_hnRNPH_hnRNPH2_hnRNPF, RNA recognition motif 2 in heterogeneous nuclear ribonucleoprotein hnRNP H, hnRNP H2, hnRNP F and similar proteins

 Score = 82.8 bits (204), Expect = 2e-19
 Identities = 39/87 (44%), Positives = 58/87 (66%), Gaps = 7/87 (8%)

Query: 441 IRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEA 500
           +R+RGLP+ C+ ++++ FF +G E   N      G+       G++TG+AFV F  +E A
Sbjct: 4   VRLRGLPFGCSKEEIVQFF-SGLEIVPN------GITLPVDFQGRSTGEAFVQFASQEIA 56

Query: 501 DKALSKHKESIGIRYIELFRSTTAEVQ 527
           +KAL KHKE IG RYIE+F+S+ AEV+
Sbjct: 57  EKALKKHKERIGHRYIEIFKSSRAEVR 83

This subgroup corresponds to the RRM2 of hnRNP H (also termed mcs94-1), hnRNP H2 (also termed FTP-3 or hnRNP H') and hnRNP F. These represent a group of nuclear RNA binding proteins that play important roles in the regulation of alternative splicing decisions. hnRNP H and hnRNP F are two closely related proteins, both of which bind to the RNA sequence DGGGD. They are present in a complex with the tissue-specific splicing factor Fox2, and regulate the alternative splicing of the fibroblast growth factor receptor 2 (FGFR2) transcripts. The presence of Fox 2 can allows hnRNP H and hnRNP F to better compete with the SR protein ASF/SF2 for binding to FGFR2 exon IIIc. Thus, hnRNP H and hnRNP F can function as potent silencers of FGFR2 exon IIIc inclusion through an interaction with the exonic GGG motifs. Furthermore, hnRNP H and hnRNP H2 are almost identical; both have been found to bind nuclear-matrix proteins. hnRNP H activates exon inclusion by binding G-rich intronic elements downstream of the 5' splice site in the transcripts of c-src, human immunodeficiency virus type 1 (HIV-1), Bcl-X, GRIN1, and myelin. It silences exons when bound to exonic elements in the transcripts of beta-tropomyosin, HIV-1, and alpha-tropomyosin. hnRNP H2 has been implicated in pre-mRNA 3' end formation. Members in this family contain three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). RRM1 and RRM2 are responsible for the binding to the RNA at DGGGD motifs, and they play an important role in efficiently silencing the exon. In addition, the family members have an extensive glycine-rich region near the C-terminus, which may allow them to homo- or heterodimerize. . Length = 83

>gnl|CDD|241173 cd12729, RRM1_hnRNPH_hnRNPH2_hnRNPF, RNA recognition motif 1 in heterogeneous nuclear ribonucleoprotein hnRNP H , hnRNP H2, hnRNP F and similar proteins

 Score = 79.9 bits (197), Expect = 2e-18
 Identities = 30/82 (36%), Positives = 53/82 (64%), Gaps = 5/82 (6%)

Query: 440 IIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEE 499
           ++++RGLP+ C+  +V  FF     + C + +G  G+ F+   +G+ +G+AFV  E EE+
Sbjct: 3   VVKVRGLPWSCSVDEVQRFF-----SDCKIANGASGIHFIYTREGRPSGEAFVELESEED 57

Query: 500 ADKALSKHKESIGIRYIELFRS 521
              AL K +E++G RY+E+F+S
Sbjct: 58  VKLALKKDRETMGHRYVEVFKS 79

This subgroup corresponds to the RRM1 of hnRNP H (also termed mcs94-1), hnRNP H2 (also termed FTP-3 or hnRNP H') and hnRNP F. These represent a group of nuclear RNA binding proteins that play important roles in the regulation of alternative splicing decisions. hnRNP H and hnRNP F are two closely related proteins, both of which bind to the RNA sequence DGGGD. They are present in a complex with the tissue-specific splicing factor Fox2, and regulate the alternative splicing of the fibroblast growth factor receptor 2 (FGFR2) transcripts. The presence of Fox 2 can allows hnRNP H and hnRNP F to better compete with the SR protein ASF/SF2 for binding to FGFR2 exon IIIc. Thus, hnRNP H and hnRNP F can function as potent silencers of FGFR2 exon IIIc inclusion through an interaction with the exonic GGG motifs. Furthermore, hnRNP H and hnRNP H2 are almost identical. Both of them have been found to bind nuclear-matrix proteins. hnRNP H activates exon inclusion by binding G-rich intronic elements downstream of the 5' splice site in the transcripts of c-src, human immunodeficiency virus type 1 (HIV-1), Bcl-X, GRIN1, and myelin. It silences exons when bound to exonic elements in the transcripts of beta-tropomyosin, HIV-1, and alpha-tropomyosin. hnRNP H2 has been implicated in pre-mRNA 3' end formation. Members in this family contain three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). RRM1 and RRM2 are responsible for the binding to the RNA at DGGGD motifs, and they play an important role in efficiently silencing the exon. In addition, the family members have an extensive glycine-rich region near the C-terminus, which may allow them to homo- or heterodimerize. . Length = 79

>gnl|CDD|241176 cd12732, RRM2_hnRNPH3, RNA recognition motif 2 in heterogeneous nuclear ribonucleoprotein H3 (hnRNP H3) and similar proteins

 Score = 75.4 bits (185), Expect = 9e-17
 Identities = 35/83 (42%), Positives = 52/83 (62%), Gaps = 7/83 (8%)

Query: 440 IIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEE 499
            +R+RGLP+ C+ ++++ FF  G E   N      G+       G++TG+AFV F  +E 
Sbjct: 20  TVRLRGLPFGCSKEEIVQFFS-GLEIVPN------GITLTMDYQGRSTGEAFVQFASKEI 72

Query: 500 ADKALSKHKESIGIRYIELFRST 522
           A+ AL KHKE IG RYIE+F+S+
Sbjct: 73  AENALGKHKERIGHRYIEIFKSS 95

This subgroup corresponds to the RRM2 of hnRNP H3 (also termed hnRNP 2H9), a nuclear RNA binding protein that belongs to the hnRNP H protein family that also includes hnRNP H (also termed mcs94-1), hnRNP H2 (also termed FTP-3 or hnRNP H') and hnRNP F. This family is involved in mRNA processing and exhibit extensive sequence homology. Currently, little is known about the functions of hnRNP H3 except for its role in the splicing arrest induced by heat shock. In addition, the typical hnRNP H proteins contain contain three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), except for hnRNP H3, in which the RRM1 is absent. RRM1 and RRM2 are responsible for the binding to the RNA at DGGGD motifs, and play an important role in efficiently silencing the exon. Members in this family can regulate the alternative splicing of the fibroblast growth factor receptor 2 (FGFR2) transcripts, and function as silencers of FGFR2 exon IIIc through an interaction with the exonic GGG motifs. The lack of RRM1 could account for the reduced silencing activity within hnRNP H3. In addition, like other hnRNP H protein family members, hnRNP H3 has an extensive glycine-rich region near the C-terminus, which may allow it to homo- or heterodimerize. . Length = 96

>gnl|CDD|240950 cd12506, RRM3_hnRNPH_CRSF1_like, RNA recognition motif 3 in heterogeneous nuclear ribonucleoprotein hnRNP H protein family, G-rich sequence factor 1 (GRSF-1) and similar proteins

 Score = 68.5 bits (168), Expect = 1e-14
 Identities = 33/80 (41%), Positives = 42/80 (52%), Gaps = 9/80 (11%)

Query: 440 IIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEE 499
            + MRGLPY  T   + +FF     N  NV             DG+ATG+A V F   E+
Sbjct: 2   TVHMRGLPYRATENDIFEFFSP--LNPVNVR-------IEYNADGRATGEADVEFATHED 52

Query: 500 ADKALSKHKESIGIRYIELF 519
           A  A+SK +E +G RYIELF
Sbjct: 53  AVAAMSKDREHMGHRYIELF 72

This subfamily corresponds to the RRM3 of hnRNP H proteins and GRSF-1. The hnRNP H protein family includes hnRNP H (also termed mcs94-1), hnRNP H2 (also termed FTP-3 or hnRNP H'), hnRNP F and hnRNP H3 (also termed hnRNP 2H9), which represent a group of nuclear RNA binding proteins that are involved in pre-mRNA processing. These proteins have similar RNA binding affinities and specifically recognize the sequence GGGA. They can either stimulate or repress splicing upon binding to a GGG motif. hnRNP H binds to the RNA substrate in the presence or absence of these proteins, whereas hnRNP F binds to the nuclear mRNA only in the presence of cap-binding proteins. hnRNP H and hnRNP H2 are almost identical; both have been found to bind nuclear-matrix proteins. hnRNP H activates exon inclusion by binding G-rich intronic elements downstream of the 5' splice site in the transcripts of c-src, human immunodeficiency virus type 1 (HIV-1), Bcl-X, GRIN1, and myelin. It silences exons when bound to exonic elements in the transcripts of beta-tropomyosin, HIV-1, and alpha-tropomyosin. hnRNP H2 has been implicated in pre-mRNA 3' end formation. hnRNP H3 may be involved in the splicing arrest induced by heat shock. Most family members contain three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), except for hnRNP H3, in which the RRM1 is absent. RRM1 and RRM2 are responsible for the binding to the RNA at DGGGD motifs, and they play an important role in efficiently silencing the exon. For instance, members in this family can regulate the alternative splicing of the fibroblast growth factor receptor 2 (FGFR2) transcripts, and function as silencers of FGFR2 exon IIIc through an interaction with the exonic GGG motifs. The lack of RRM1 could account for the reduced silencing activity within hnRNP H3. In addition, the family members have an extensive glycine-rich region near the C-terminus, which may allow them to homo- or heterodimerize. The family also includes a cytoplasmic poly(A)+ mRNA binding protein, GRSF-1, which interacts with RNA in a G-rich element-dependent manner. It may function in RNA packaging, stabilization of RNA secondary structure, or other macromolecular interactions. GRSF-1 also contains three potential RRMs responsible for the RNA binding, and two auxiliary domains (an acidic alpha-helical domain and an N-terminal alanine-rich region) that may play a role in protein-protein interactions and provide binding specificity. . Length = 75

>gnl|CDD|240946 cd12502, RRM2_RMB19, RNA recognition motif 2 in RNA-binding protein 19 (RBM19) and similar proteins

 Score = 67.0 bits (164), Expect = 5e-14
 Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 9/79 (11%)

Query: 441 IRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEA 500
           ++MRG P+    K + +FF      +            VK   G+ TG AFV  + EE+ 
Sbjct: 3   VKMRGAPFNVKEKHIREFFSPLKPVAIR---------IVKNDHGRKTGFAFVDLKSEEDL 53

Query: 501 DKALSKHKESIGIRYIELF 519
            KAL ++K+ +G RYIELF
Sbjct: 54  KKALKRNKDYMGGRYIELF 72

This subfamily corresponds to the RRM2 of RBM19, also termed RNA-binding domain-1 (RBD-1), a nucleolar protein conserved in eukaryotes. It is involved in ribosome biogenesis by processing rRNA and is also essential for preimplantation development. RBM19 has a unique domain organization containing 6 conserved RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). . Length = 72

>gnl|CDD|240951 cd12507, RRM1_ESRPs_Fusilli, RNA recognition motif 1 in epithelial splicing regulatory protein ESRP1, ESRP2, Drosophila RNA-binding protein Fusilli and similar proteins

 Score = 64.8 bits (158), Expect = 3e-13
 Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 7/82 (8%)

Query: 440 IIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEE 499
           ++R RGLP++ + + +  FF        N+  G  GV       G+  G+A + F  +E 
Sbjct: 1   VVRARGLPWQSSDQDIAQFFRG-----LNIAKG--GVALCLSAQGRRNGEALIRFVDQEH 53

Query: 500 ADKALSKHKESIGIRYIELFRS 521
            D AL +HK  +G RYIE++++
Sbjct: 54  RDLALQRHKHHMGTRYIEVYKA 75

This subfamily corresponds to the RRM1 of ESRPs and Fusilli. ESRP1 (also termed RBM35A) and ESRP2 (also termed RBM35B). These are epithelial-specific RNA binding proteins that promote splicing of the epithelial variant of the fibroblast growth factor receptor 2 (FGFR2), ENAH (also termed hMena), CD44 and CTNND1 (also termed p120-Catenin) transcripts. They are highly conserved paralogs and specifically bind to GU-rich binding site. ESRP1 and ESRP2 contain three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). The family also includes Drosophila fusilli (fus) gene encoding RNA-binding protein Fusilli. Loss of fusilli activity causes lethality during embryogenesis in flies. Drosophila Fusilli can regulate endogenous fibroblast growth factor receptor 2 (FGFR2) splicing and functions as a splicing factor. It shows high sequence homology to ESRPs and contains three RRMs as well. It also has an N-terminal domain with unknown function and a C-terminal domain particularly rich in alanine, glutamine, and serine. . Length = 75

>gnl|CDD|241182 cd12738, RRM1_Fusilli, RNA recognition motif 1 in Drosophila RNA-binding protein Fusilli and similar proteins

 Score = 64.5 bits (157), Expect = 5e-13
 Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 7/86 (8%)

Query: 440 IIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEE 499
           ++R RGLP++ + + +  FF        N+  G  GV     P G+  G+A V F   E 
Sbjct: 1   VVRARGLPWQSSDQDIAKFFRG-----LNIAKG--GVALCLNPQGRRNGEALVRFTCTEH 53

Query: 500 ADKALSKHKESIGIRYIELFRSTTAE 525
            D AL +HK  IG RYIE++++T  +
Sbjct: 54  RDLALKRHKHHIGQRYIEVYKATGED 79

This subgroup corresponds to the RRM1 of RNA-binding protein Fusilli which is encoded by Drosophila fusilli (fus) gene. Loss of Fusilli activity causes lethality during embryogenesis in flies. Drosophila Fusilli can regulate endogenous fibroblast growth factor receptor 2 (FGFR2) splicing and functions as a splicing factor. Fusilli contains three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), an N-terminal domain with unknown function and a C-terminal domain particularly rich in alanine, glutamine, and serine. . Length = 80

>gnl|CDD|240700 cd12254, RRM_hnRNPH_ESRPs_RBM12_like, RNA recognition motif found in heterogeneous nuclear ribonucleoprotein (hnRNP) H protein family, epithelial splicing regulatory proteins (ESRPs), Drosophila RNA-binding protein Fusilli, RNA-binding protein 12 (RBM12) and similar proteins

 Score = 63.3 bits (155), Expect = 8e-13
 Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 7/71 (9%)

Query: 59  KVLVEHILEFLGEFASNIVYQGVHMVYNSQGQPSGEAFIQMDSEHSAYLAAQLRHNRNMI 118
               E I +F      +I   G+H+VY+  G+P+GEA+++  S   A  A + +HN  M 
Sbjct: 10  SATEEDIRDFFSGL--DIPPDGIHIVYDDDGRPTGEAYVEFASPEDARRALR-KHNNKM- 65

Query: 119 FGKKQRYIEVF 129
                RYIEVF
Sbjct: 66  ---GGRYIEVF 73

The family includes RRM domains in the hnRNP H protein family, G-rich sequence factor 1 (GRSF-1), ESRPs (also termed RBM35), Drosophila Fusilli, RBM12 (also termed SWAN), RBM12B, RBM19 (also termed RBD-1) and similar proteins. The hnRNP H protein family includes hnRNP H (also termed mcs94-1), hnRNP H2 (also termed FTP-3 or hnRNP H'), hnRNP F and hnRNP H3 (also termed hnRNP 2H9), which represent a group of nuclear RNA binding proteins that are involved in pre-mRNA processing. GRSF-1 is a cytoplasmic poly(A)+ mRNA binding protein which interacts with RNA in a G-rich element-dependent manner. It may function in RNA packaging, stabilization of RNA secondary structure, or other macromolecular interactions. ESRP1 (also termed RBM35A) and ESRP2 (also termed RBM35B) are epithelial-specific RNA binding proteins that promote splicing of the epithelial variant of fibroblast growth factor receptor 2 (FGFR2), ENAH (also termed hMena), CD44 and CTNND1 (also termed p120-Catenin) transcripts. Fusilli shows high sequence homology to ESRPs. It can regulate endogenous FGFR2 splicing and functions as a splicing factor. The biological roles of both, RBM12 and RBM12B, remain unclear. RBM19 is a nucleolar protein conserved in eukaryotes. It is involved in ribosome biogenesis by processing rRNA. In addition, it is essential for preimplantation development. Members in this family contain 2~6 conserved RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). . Length = 73

>gnl|CDD|241190 cd12746, RRM2_RBM12B, RNA recognition motif 2 in RNA-binding protein 12B (RBM12B) and similar proteins

 Score = 63.3 bits (154), Expect = 1e-12
 Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 9/83 (10%)

Query: 443 MRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADK 502
           +RGLP+  T   V DFF +G       +DG   V+F+K   G   G++ V F  +E+A +
Sbjct: 4   LRGLPFSVTEDNVRDFF-SGL-----KVDG---VIFLKNRRGLNNGNSMVKFATKEDAIE 54

Query: 503 ALSKHKESIGIRYIELFRSTTAE 525
            L + ++ +G RYIE+ R+T  E
Sbjct: 55  GLKRDRQYMGSRYIEISRTTEEE 77

This subgroup corresponds to the RRM2 of RBM12B which contains five distinct RNA binding motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). Its biological role remains unclear. . Length = 78

>gnl|CDD|241181 cd12737, RRM1_ESRP2, RNA recognition motif 1 in epithelial splicing regulatory protein 2 (ESRP2) and similar proteins

 Score = 61.9 bits (150), Expect = 4e-12
 Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 7/86 (8%)

Query: 440 IIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEE 499
           +IR RGLP++ + + +  FF+       N+  G  GV       G+  G+A V F   E+
Sbjct: 1   VIRARGLPWQSSDQDIARFFKG-----LNIAKG--GVALCLNAQGRRNGEALVRFVNSEQ 53

Query: 500 ADKALSKHKESIGIRYIELFRSTTAE 525
            D AL +HK  +G RYIE++++T  E
Sbjct: 54  RDLALQRHKHHMGSRYIEVYKATGEE 79

This subgroup corresponds to the RRM1 of ESRP2, also termed RNA-binding motif protein 35B (RBM35B), which has been identified as an epithelial cell type-specific regulator of fibroblast growth factor receptor 2 (FGFR2) splicing. It is required for expression of epithelial FGFR2-IIIb and the regulation of CD44, CTNND1 (also termed p120-Catenin) and ENAH (also termed hMena) splicing. It enhances epithelial-specific exons of CD44 and ENAH, silences mesenchymal exons of CTNND1, or both within FGFR2. ESRP2 contains three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). . Length = 80

>gnl|CDD|240956 cd12512, RRM3_RBM12, RNA recognition motif 3 in RNA-binding protein 12 (RBM12) and similar proteins

 Score = 60.7 bits (147), Expect = 2e-11
 Identities = 29/78 (37%), Positives = 47/78 (60%), Gaps = 7/78 (8%)

Query: 441 IRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEA 500
           + ++GLPYE   K VIDFF+       +++  E+ +     P+GKATG+ FV F  E + 
Sbjct: 12  VYLKGLPYEAENKHVIDFFK-----KLDIV--EDSIYIAYGPNGKATGEGFVEFRNEADY 64

Query: 501 DKALSKHKESIGIRYIEL 518
             AL +HK+ +G R+I++
Sbjct: 65  KAALCRHKQYMGNRFIQV 82

This subfamily corresponds to the RRM3 of RBM12. RBM12, also termed SH3/WW domain anchor protein in the nucleus (SWAN), is ubiquitously expressed. It contains five distinct RNA binding motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), two proline-rich regions, and several putative transmembrane domains. The biological role of RBM12 remains unclear. . Length = 101

>gnl|CDD|240949 cd12505, RRM2_GRSF1, RNA recognition motif 2 in G-rich sequence factor 1 (GRSF-1) and similar proteins

 Score = 59.0 bits (143), Expect = 3e-11
 Identities = 20/44 (45%), Positives = 27/44 (61%)

Query: 367 GVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEV 410
           GV + L+  GR+ GEA V+F   E  + AL +H+  I  RYIEV
Sbjct: 31  GVVIVLNRRGRKTGEAYVQFATPEMANKALLKHREEIGNRYIEV 74

This subfamily corresponds to the RRM2 of GRSF-1, a cytoplasmic poly(A)+ mRNA binding protein which interacts with RNA in a G-rich element-dependent manner. It may function in RNA packaging, stabilization of RNA secondary structure, or other macromolecular interactions. GRSF-1 contains three potential RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), which are responsible for the RNA binding. In addition, GRSF-1 has two auxiliary domains, an acidic alpha-helical domain and an N-terminal alanine-rich region, that may play a role in protein-protein interactions and provide binding specificity. . Length = 75

>gnl|CDD|241180 cd12736, RRM1_ESRP1, RNA recognition motif 1 in epithelial splicing regulatory protein 1 (ESRP1) and similar proteins

 Score = 59.3 bits (143), Expect = 4e-11
 Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 7/83 (8%)

Query: 440 IIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEE 499
           +IR RGLP++ + + +  FF+       N+  G  G        G+  G+A V F  EE 
Sbjct: 6   VIRARGLPWQSSDQDIARFFKG-----LNIAKG--GAALCLNAQGRRNGEALVRFVSEEH 58

Query: 500 ADKALSKHKESIGIRYIELFRST 522
            D AL +HK  +G RYIE++++T
Sbjct: 59  RDLALQRHKHHMGNRYIEVYKAT 81

This subgroup corresponds to the RRM1 of ESRP1, also termed RNA-binding motif protein 35A (RBM35A), which has been identified as an epithelial cell type-specific regulator of fibroblast growth factor receptor 2 (FGFR2) splicing. It is required for expression of epithelial FGFR2-IIIb and the regulation of CD44, CTNND1 (p120-Catenin) and ENAH (hMena) splicing. It enhances epithelial-specific exons of CD44 and ENAH, silences mesenchymal exons of CTNND1, or both within FGFR2. Additional research indicated that ESRP1 functions as a tumor suppressor in colon cancer cells. It may be involved in posttranscriptional regulation of various genes by exerting a differential effect on protein translation via 5' untranslated regions (UTRs) of mRNAs. ESRP1 contains three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). . Length = 85

>gnl|CDD|240953 cd12509, RRM3_ESRPs_Fusilli, RNA recognition motif 3 in epithelial splicing regulatory protein ESRP1, ESRP2, Drosophila RNA-binding protein Fusilli and similar proteins

 Score = 58.6 bits (142), Expect = 5e-11
 Identities = 30/80 (37%), Positives = 44/80 (55%), Gaps = 6/80 (7%)

Query: 441 IRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEA 500
           IR+RGLPYE T + +++F     E + ++     GV  V    G+ +GDAF+     E A
Sbjct: 4   IRLRGLPYEATVEDILNFLG---ELARSIAPQ--GVHMVLNAQGRPSGDAFIQMLSAEFA 58

Query: 501 DK-ALSKHKESIGIRYIELF 519
            + A   HK  +G RYIE+F
Sbjct: 59  TRAANELHKHHMGERYIEVF 78

This subfamily corresponds to the RRM3 of ESRPs and Fusilli. ESRP1 (also termed RBM35A) and ESRP2 (also termed RBM35B) are epithelial-specific RNA binding proteins that promote splicing of the epithelial variant of the fibroblast growth factor receptor 2 (FGFR2), ENAH (also termed hMena), CD44 and CTNND1 (also termed p120-Catenin) transcripts. They are highly conserved paralogs and specifically bind to GU-rich binding site. ESRP1 and ESRP2 contain three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). The family also includes Drosophila fusilli (fus) gene encoding RNA-binding protein Fusilli. Loss of fusilli activity causes lethality during embryogenesis in flies. Drosophila Fusilli can regulate endogenous FGFR2 splicing and functions as a splicing factor. Fusilli shows high sequence homology to ESRPs and contains three RRMs as well. It also has an N-terminal domain with unknown function and a C-terminal domain particularly rich in alanine, glutamine, and serine. . Length = 81

>gnl|CDD|240947 cd12503, RRM1_hnRNPH_GRSF1_like, RNA recognition motif 1 in heterogeneous nuclear ribonucleoprotein (hnRNP) H protein family, G-rich sequence factor 1 (GRSF-1) and similar proteins

 Score = 58.5 bits (142), Expect = 6e-11
 Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 9/71 (12%)

Query: 62  VEHILEFLGEFASNIV--YQGVHMVYNSQGQPSGEAFIQMDSEHSAYLAAQLRHNRNMIF 119
            E +L F  +    I     G+H  Y+ +G+PSGEAFI+++SE     A + +HN +M  
Sbjct: 13  AEDVLNFFSD--CRIKGGENGIHFTYSREGRPSGEAFIELESEEDVEKALE-KHNEHM-- 67

Query: 120 GKKQRYIEVFQ 130
               RYIEVF+
Sbjct: 68  --GHRYIEVFR 76

This subfamily corresponds to the RRM1 of hnRNP H proteins and GRSF-1. The hnRNP H protein family includes hnRNP H (also termed mcs94-1), hnRNP H2 (also termed FTP-3 or hnRNP H'), hnRNP F and hnRNP H3 (also termed hnRNP 2H9), which represent a group of nuclear RNA binding proteins that are involved in pre-mRNA processing. These proteins have similar RNA binding affinities and specifically recognize the sequence GGGA. They can either stimulate or repress splicing upon binding to a GGG motif. hnRNP H binds to the RNA substrate in the presence or absence of these proteins, whereas hnRNP F binds to the nuclear mRNA only in the presence of cap-binding proteins. hnRNP H and hnRNP H2 are almost identical; both have been found to bind nuclear-matrix proteins. hnRNP H activates exon inclusion by binding G-rich intronic elements downstream of the 5' splice site in the transcripts of c-src, human immunodeficiency virus type 1 (HIV-1), Bcl-X, GRIN1, and myelin. It silences exons when bound to exonic elements in the transcripts of beta-tropomyosin, HIV-1, and alpha-tropomyosin. hnRNP H2 has been implicated in pre-mRNA 3' end formation. hnRNP H3 may be involved in splicing arrest induced by heat shock. Most family members contain three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), except for hnRNP H3, in which the RRM1 is absent. RRM1 and RRM2 are responsible for the binding to the RNA at DGGGD motifs, and play an important role in efficiently silencing the exon. Members in this family can regulate the alternative splicing of fibroblast growth factor receptor 2 (FGFR2) transcripts, and function as silencers of FGFR2 exon IIIc through an interaction with the exonic GGG motifs. The lack of RRM1 could account for the reduced silencing activity within hnRNP H3. Members in this family have an extensive glycine-rich region near the C-terminus, which may allow them to homo- or heterodimerize. They also include a cytoplasmic poly(A)+ mRNA binding protein, GRSF-1, which interacts with RNA in a G-rich element-dependent manner. They may function in RNA packaging, stabilization of RNA secondary structure, or other macromolecular interactions. GRSF-1 contains three potential RRMs responsible for the RNA binding, and two auxiliary domains (an acidic alpha-helical domain and an N-terminal alanine-rich region) that may play a role in protein-protein interactions and provide binding specificity. . Length = 77

>gnl|CDD|240700 cd12254, RRM_hnRNPH_ESRPs_RBM12_like, RNA recognition motif found in heterogeneous nuclear ribonucleoprotein (hnRNP) H protein family, epithelial splicing regulatory proteins (ESRPs), Drosophila RNA-binding protein Fusilli, RNA-binding protein 12 (RBM12) and similar proteins

 Score = 57.2 bits (139), Expect = 1e-10
 Identities = 17/45 (37%), Positives = 23/45 (51%)

Query: 366 GGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEV 410
            G+ +     GR  GEA V F   E    AL++H + +  RYIEV
Sbjct: 28  DGIHIVYDDDGRPTGEAYVEFASPEDARRALRKHNNKMGGRYIEV 72

The family includes RRM domains in the hnRNP H protein family, G-rich sequence factor 1 (GRSF-1), ESRPs (also termed RBM35), Drosophila Fusilli, RBM12 (also termed SWAN), RBM12B, RBM19 (also termed RBD-1) and similar proteins. The hnRNP H protein family includes hnRNP H (also termed mcs94-1), hnRNP H2 (also termed FTP-3 or hnRNP H'), hnRNP F and hnRNP H3 (also termed hnRNP 2H9), which represent a group of nuclear RNA binding proteins that are involved in pre-mRNA processing. GRSF-1 is a cytoplasmic poly(A)+ mRNA binding protein which interacts with RNA in a G-rich element-dependent manner. It may function in RNA packaging, stabilization of RNA secondary structure, or other macromolecular interactions. ESRP1 (also termed RBM35A) and ESRP2 (also termed RBM35B) are epithelial-specific RNA binding proteins that promote splicing of the epithelial variant of fibroblast growth factor receptor 2 (FGFR2), ENAH (also termed hMena), CD44 and CTNND1 (also termed p120-Catenin) transcripts. Fusilli shows high sequence homology to ESRPs. It can regulate endogenous FGFR2 splicing and functions as a splicing factor. The biological roles of both, RBM12 and RBM12B, remain unclear. RBM19 is a nucleolar protein conserved in eukaryotes. It is involved in ribosome biogenesis by processing rRNA. In addition, it is essential for preimplantation development. Members in this family contain 2~6 conserved RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). . Length = 73

>gnl|CDD|240952 cd12508, RRM2_ESRPs_Fusilli, RNA recognition motif 2 in epithelial splicing regulatory protein ESRP1, ESRP2, Drosophila RNA-binding protein Fusilli and similar proteins

 Score = 54.6 bits (132), Expect = 1e-09
 Identities = 18/52 (34%), Positives = 27/52 (51%)

Query: 362 VLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKA 413
           V G  G+       GR  G+A V F  +E    AL +HK ++  RYIE+ ++
Sbjct: 29  VGGPDGILFVTGPDGRPTGDAFVLFETEEDAQRALGKHKENLGSRYIELFRS 80

This subfamily corresponds to the RRM2 of ESRPs and Fusilli. ESRP1 (also termed RBM35A) and ESRP2 (also termed RBM35B) are epithelial-specific RNA binding proteins that promote splicing of the epithelial variant of the fibroblast growth factor receptor 2 (FGFR2), ENAH (also termed hMena), CD44 and CTNND1 (also termed p120-Catenin) transcripts. They are highly conserved paralogs and specifically bind to GU-rich binding site. ESRP1 and ESRP2 contain three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). The family also includes Drosophila fusilli (fus) gene encoding RNA-binding protein Fusilli.Loss of fusilli activity causes lethality during embryogenesis in flies. Drosophila Fusilli can regulate endogenous FGFR2 splicing and functions as a splicing factor. It shows high sequence homology to ESRPs and contains three RRMs as well. It also has an N-terminal domain with unknown function and a C-terminal domain particularly rich in alanine, glutamine, and serine. . Length = 80

>gnl|CDD|240955 cd12511, RRM2_RBM12_like, RNA recognition motif 2 in RNA-binding protein RBM12, RBM12B and similar proteins

 Score = 53.2 bits (128), Expect = 3e-09
 Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 9/81 (11%)

Query: 441 IRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEA 500
           + + GLPY      V +FF  G +         E V+F+K+ +G+  G+A V F   ++A
Sbjct: 2   VFLHGLPYTADEHDVKEFF-HGLD--------VEDVIFLKRHNGRNNGNAIVKFATFQDA 52

Query: 501 DKALSKHKESIGIRYIELFRS 521
            +AL +H+E +G RYIEL  S
Sbjct: 53  KEALKRHRELMGSRYIELMLS 73

This subfamily corresponds to the RRM2 of RBM12 and RBM12B. RBM12, also termed SH3/WW domain anchor protein in the nucleus (SWAN), is ubiquitously expressed. It contains five distinct RNA binding motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), two proline-rich regions, and several putative transmembrane domains. RBM12B shows high sequence semilarity with RBM12. It contains five distinct RRMs as well. The biological roles of both RBM12 and RBM12B remain unclear. . Length = 73

>gnl|CDD|241179 cd12735, RRM3_hnRNPH3, RNA recognition motif 3 in heterogeneous nuclear ribonucleoprotein H3 (hnRNP H3) and similar proteins

 Score = 53.1 bits (127), Expect = 5e-09
 Identities = 30/79 (37%), Positives = 41/79 (51%), Gaps = 9/79 (11%)

Query: 441 IRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEA 500
           + MRGLP+  T   + +FF   T    ++  G          DG+ATG+A V F   E+A
Sbjct: 3   VHMRGLPFRATESDIANFFSPLTPIRVHIDIG---------ADGRATGEADVEFVTHEDA 53

Query: 501 DKALSKHKESIGIRYIELF 519
             A+SK K  +  RYIELF
Sbjct: 54  VAAMSKDKNHMQHRYIELF 72

This subgroup corresponds to the RRM3 of hnRNP H3 (also termed hnRNP 2H9), a nuclear RNA binding protein that belongs to the hnRNP H protein family that also includes hnRNP H (also termed mcs94-1), hnRNP H2 (also termed FTP-3 or hnRNP H'), and hnRNP F. This family is involved in mRNA processing and exhibit extensive sequence homology. Currently, little is known about the functions of hnRNP H3 except for its role in the splicing arrest induced by heat shock. In addition, the typical hnRNP H proteins contain contain three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), except for hnRNP H3, in which the RRM1 is absent. RRM1 and RRM2 are responsible for the binding to the RNA at DGGGD motifs, and they play an important role in efficiently silencing the exon. Members in this family can regulate the alternative splicing of the fibroblast growth factor receptor 2 (FGFR2) transcripts, and function as silencers of FGFR2 exon IIIc through an interaction with the exonic GGG motifs. The lack of RRM1 could account for the reduced silencing activity within hnRNP H3. In addition, like other hnRNP H protein family members, hnRNP H3 has an extensive glycine-rich region near the C-terminus, which may allow it to homo- or heterodimerize. . Length = 75

>gnl|CDD|241186 cd12742, RRM3_ESRP1_ESRP2, RNA recognition motif in epithelial splicing regulatory protein ESRP1, ESRP2 and similar proteins

 Score = 52.5 bits (126), Expect = 8e-09
 Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 6/80 (7%)

Query: 441 IRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEA 500
           IR+RGLPY  T + +++F     E + ++     GV  V    G+ +GDAF+  +  E A
Sbjct: 4   IRLRGLPYTATIEDILEFL---GEFAADIRP--HGVHMVLNQQGRPSGDAFIQMKSAERA 58

Query: 501 DKALSK-HKESIGIRYIELF 519
             A  K HK+ +  RY+E+F
Sbjct: 59  FLAAQKCHKKMMKDRYVEVF 78

This subgroup corresponds to the RRM3 of ESRP1 (also termed RBM35A) and ESRP2 (also termed RBM35B). These are epithelial-specific RNA binding proteins that promote splicing of the epithelial variant of the fibroblast growth factor receptor 2 (FGFR2), ENAH (also termed hMena), CD44 and CTNND1 (also termed p120-Catenin) transcripts. They are highly conserved paralogs and specifically bind to GU-rich binding site. ESRP1 and ESRP2 contain three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). . Length = 81

>gnl|CDD|241178 cd12734, RRM3_hnRNPH_hnRNPH2_hnRNPF, RNA recognition motif 3 in heterogeneous nuclear ribonucleoprotein hnRNP H , hnRNP H2, hnRNP F and similar proteins

 Score = 52.0 bits (124), Expect = 9e-09
 Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 9/83 (10%)

Query: 441 IRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEA 500
           + MRGLPY  T   + +FF        ++  G         PDG+ TG+A V F   E+A
Sbjct: 3   VHMRGLPYRATENDIYNFFSPLNPVRVHIEIG---------PDGRVTGEADVEFATHEDA 53

Query: 501 DKALSKHKESIGIRYIELFRSTT 523
             A+SK K ++  RY+ELF ++T
Sbjct: 54  VAAMSKDKANMQHRYVELFLNST 76

This subgroup corresponds to the RRM3 of hnRNP H (also termed mcs94-1), hnRNP H2 (also termed FTP-3 or hnRNP H') and hnRNP F, which represent a group of nuclear RNA binding proteins that play important roles in the regulation of alternative splicing decisions. hnRNP H and hnRNP F are two closely related proteins, both of which bind to the RNA sequence DGGGD. They are present in a complex with the tissue-specific splicing factor Fox2, and regulate the alternative splicing of the fibroblast growth factor receptor 2 (FGFR2) transcripts. The presence of Fox 2 can allows hnRNP H and hnRNP F to better compete with the SR protein ASF/SF2 for binding to FGFR2 exon IIIc. Thus, hnRNP H and hnRNP F can function as potent silencers of FGFR2 exon IIIc inclusion through an interaction with the exonic GGG motifs. Furthermore, hnRNP H and hnRNP H2 are almost identical; bothe have been found to bind nuclear-matrix proteins. hnRNP H activates exon inclusion by binding G-rich intronic elements downstream of the 5' splice site in the transcripts of c-src, human immunodeficiency virus type 1 (HIV-1), Bcl-X, GRIN1, and myelin. It silences exons when bound to exonic elements in the transcripts of beta-tropomyosin, HIV-1, and alpha-tropomyosin. hnRNP H2 has been implicated in pre-mRNA 3' end formation. Members in this family contain three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). RRM1 and RRM2 are responsible for the binding to the RNA at DGGGD motifs, and they play an important role in efficiently silencing the exon. In addition, the family members have an extensive glycine-rich region near the C-terminus, which may allow them to homo- or heterodimerize. . Length = 76

>gnl|CDD|240947 cd12503, RRM1_hnRNPH_GRSF1_like, RNA recognition motif 1 in heterogeneous nuclear ribonucleoprotein (hnRNP) H protein family, G-rich sequence factor 1 (GRSF-1) and similar proteins

 Score = 51.2 bits (123), Expect = 2e-08
 Identities = 18/49 (36%), Positives = 27/49 (55%)

Query: 364 GLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTK 412
           G  G+    S  GR +GEA +    +E  + AL++H  H+  RYIEV +
Sbjct: 28  GENGIHFTYSREGRPSGEAFIELESEEDVEKALEKHNEHMGHRYIEVFR 76

This subfamily corresponds to the RRM1 of hnRNP H proteins and GRSF-1. The hnRNP H protein family includes hnRNP H (also termed mcs94-1), hnRNP H2 (also termed FTP-3 or hnRNP H'), hnRNP F and hnRNP H3 (also termed hnRNP 2H9), which represent a group of nuclear RNA binding proteins that are involved in pre-mRNA processing. These proteins have similar RNA binding affinities and specifically recognize the sequence GGGA. They can either stimulate or repress splicing upon binding to a GGG motif. hnRNP H binds to the RNA substrate in the presence or absence of these proteins, whereas hnRNP F binds to the nuclear mRNA only in the presence of cap-binding proteins. hnRNP H and hnRNP H2 are almost identical; both have been found to bind nuclear-matrix proteins. hnRNP H activates exon inclusion by binding G-rich intronic elements downstream of the 5' splice site in the transcripts of c-src, human immunodeficiency virus type 1 (HIV-1), Bcl-X, GRIN1, and myelin. It silences exons when bound to exonic elements in the transcripts of beta-tropomyosin, HIV-1, and alpha-tropomyosin. hnRNP H2 has been implicated in pre-mRNA 3' end formation. hnRNP H3 may be involved in splicing arrest induced by heat shock. Most family members contain three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), except for hnRNP H3, in which the RRM1 is absent. RRM1 and RRM2 are responsible for the binding to the RNA at DGGGD motifs, and play an important role in efficiently silencing the exon. Members in this family can regulate the alternative splicing of fibroblast growth factor receptor 2 (FGFR2) transcripts, and function as silencers of FGFR2 exon IIIc through an interaction with the exonic GGG motifs. The lack of RRM1 could account for the reduced silencing activity within hnRNP H3. Members in this family have an extensive glycine-rich region near the C-terminus, which may allow them to homo- or heterodimerize. They also include a cytoplasmic poly(A)+ mRNA binding protein, GRSF-1, which interacts with RNA in a G-rich element-dependent manner. They may function in RNA packaging, stabilization of RNA secondary structure, or other macromolecular interactions. GRSF-1 contains three potential RRMs responsible for the RNA binding, and two auxiliary domains (an acidic alpha-helical domain and an N-terminal alanine-rich region) that may play a role in protein-protein interactions and provide binding specificity. . Length = 77

>gnl|CDD|241177 cd12733, RRM3_GRSF1, RNA recognition motif 3 in G-rich sequence factor 1 (GRSF-1) and similar proteins

 Score = 51.4 bits (123), Expect = 2e-08
 Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 9/79 (11%)

Query: 441 IRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEA 500
           + MRGLP++ + + +++FF                +L     DG+ATG+A V FE  ++A
Sbjct: 3   VHMRGLPFQASGQDIVNFFAPLKPTR---------ILIEYSSDGRATGEADVHFESHDDA 53

Query: 501 DKALSKHKESIGIRYIELF 519
             A++K +  +  RYIELF
Sbjct: 54  VAAMAKDRAHMQHRYIELF 72

This subgroup corresponds to the RRM3 of G-rich sequence factor 1 (GRSF-1), a cytoplasmic poly(A)+ mRNA binding protein which interacts with RNA in a G-rich element-dependent manner. It may function in RNA packaging, stabilization of RNA secondary structure, or other macromolecular interactions. GRSF-1 contains three potential RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), which are responsible for the RNA binding. In addition, GRSF-1 has two auxiliary domains, an acidic alpha-helical domain and an N-terminal alanine-rich region, that may play a role in protein-protein interactions and provide binding specificity. . Length = 75

>gnl|CDD|241173 cd12729, RRM1_hnRNPH_hnRNPH2_hnRNPF, RNA recognition motif 1 in heterogeneous nuclear ribonucleoprotein hnRNP H , hnRNP H2, hnRNP F and similar proteins

 Score = 49.9 bits (119), Expect = 6e-08
 Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 5/69 (7%)

Query: 62  VEHILEFLGEFASNIVYQGVHMVYNSQGQPSGEAFIQMDSEHSAYLAAQLRHNRNMIFGK 121
           V+ +  F  +        G+H +Y  +G+PSGEAF++++SE    LA  L+ +R  +   
Sbjct: 15  VDEVQRFFSDCKIANGASGIHFIYTREGRPSGEAFVELESEEDVKLA--LKKDRETM--- 69

Query: 122 KQRYIEVFQ 130
             RY+EVF+
Sbjct: 70  GHRYVEVFK 78

This subgroup corresponds to the RRM1 of hnRNP H (also termed mcs94-1), hnRNP H2 (also termed FTP-3 or hnRNP H') and hnRNP F. These represent a group of nuclear RNA binding proteins that play important roles in the regulation of alternative splicing decisions. hnRNP H and hnRNP F are two closely related proteins, both of which bind to the RNA sequence DGGGD. They are present in a complex with the tissue-specific splicing factor Fox2, and regulate the alternative splicing of the fibroblast growth factor receptor 2 (FGFR2) transcripts. The presence of Fox 2 can allows hnRNP H and hnRNP F to better compete with the SR protein ASF/SF2 for binding to FGFR2 exon IIIc. Thus, hnRNP H and hnRNP F can function as potent silencers of FGFR2 exon IIIc inclusion through an interaction with the exonic GGG motifs. Furthermore, hnRNP H and hnRNP H2 are almost identical. Both of them have been found to bind nuclear-matrix proteins. hnRNP H activates exon inclusion by binding G-rich intronic elements downstream of the 5' splice site in the transcripts of c-src, human immunodeficiency virus type 1 (HIV-1), Bcl-X, GRIN1, and myelin. It silences exons when bound to exonic elements in the transcripts of beta-tropomyosin, HIV-1, and alpha-tropomyosin. hnRNP H2 has been implicated in pre-mRNA 3' end formation. Members in this family contain three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). RRM1 and RRM2 are responsible for the binding to the RNA at DGGGD motifs, and they play an important role in efficiently silencing the exon. In addition, the family members have an extensive glycine-rich region near the C-terminus, which may allow them to homo- or heterodimerize. . Length = 79

>gnl|CDD|240952 cd12508, RRM2_ESRPs_Fusilli, RNA recognition motif 2 in epithelial splicing regulatory protein ESRP1, ESRP2, Drosophila RNA-binding protein Fusilli and similar proteins

 Score = 49.2 bits (118), Expect = 1e-07
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 6/68 (8%)

Query: 63  EHILEFLGEF-ASNIVYQGVHMVYNSQGQPSGEAFIQMDSEHSAYLAAQLRHNRNMIFGK 121
             IL F G          G+  V    G+P+G+AF+  ++E  A  A   +H  N+    
Sbjct: 16  ADILAFFGGLCPVVGGPDGILFVTGPDGRPTGDAFVLFETEEDAQRALG-KHKENL---- 70

Query: 122 KQRYIEVF 129
             RYIE+F
Sbjct: 71  GSRYIELF 78

This subfamily corresponds to the RRM2 of ESRPs and Fusilli. ESRP1 (also termed RBM35A) and ESRP2 (also termed RBM35B) are epithelial-specific RNA binding proteins that promote splicing of the epithelial variant of the fibroblast growth factor receptor 2 (FGFR2), ENAH (also termed hMena), CD44 and CTNND1 (also termed p120-Catenin) transcripts. They are highly conserved paralogs and specifically bind to GU-rich binding site. ESRP1 and ESRP2 contain three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). The family also includes Drosophila fusilli (fus) gene encoding RNA-binding protein Fusilli.Loss of fusilli activity causes lethality during embryogenesis in flies. Drosophila Fusilli can regulate endogenous FGFR2 splicing and functions as a splicing factor. It shows high sequence homology to ESRPs and contains three RRMs as well. It also has an N-terminal domain with unknown function and a C-terminal domain particularly rich in alanine, glutamine, and serine. . Length = 80

>gnl|CDD|240958 cd12514, RRM4_RBM12_like, RNA recognition motif 4 in RNA-binding protein RBM12, RBM12B and similar proteins

 Score = 48.1 bits (115), Expect = 2e-07
 Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 7/79 (8%)

Query: 440 IIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEE 499
            I+++ +P++ T  +V+ FF         +   E+G+  +    GK  G+A+V F  EE+
Sbjct: 1   CIKIKNIPFDVTKGEVLAFFA-------GIAIAEQGIHILYDKTGKTLGEAYVEFVSEED 53

Query: 500 ADKALSKHKESIGIRYIEL 518
           A +A   H++ +  R I L
Sbjct: 54  AMRAERLHRKKLKGREILL 72

This subfamily corresponds to the RRM4 of RBM12 and RBM12B. RBM12, also termed SH3/WW domain anchor protein in the nucleus (SWAN), is ubiquitously expressed. It contains five distinct RNA binding motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), two proline-rich regions, and several putative transmembrane domains. RBM12B show high sequence semilarity with RBM12. It contains five distinct RRMs as well. The biological roles of both RBM12 and RBM12B remain unclear. . Length = 73

>gnl|CDD|214636 smart00360, RRM, RNA recognition motif

 Score = 47.6 bits (114), Expect = 3e-07
 Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 10/80 (12%)

Query: 441 IRMRGLPYECTAKQVIDFFEA-GTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEE 499
           + +  LP + T +++ + F   G   S  ++          K  GK+ G AFV FE EE+
Sbjct: 2   LFVGNLPPDTTEEELRELFSKFGKVESVRLV--------RDKETGKSKGFAFVEFESEED 53

Query: 500 ADKALSK-HKESIGIRYIEL 518
           A+KAL   + + +  R +++
Sbjct: 54  AEKALEALNGKELDGRPLKV 73

Length = 73

>gnl|CDD|215696 pfam00076, RRM_1, RNA recognition motif

 Score = 46.8 bits (112), Expect = 6e-07
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 10/67 (14%)

Query: 441 IRMRGLPYECTAKQVIDFFE-AGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEE 499
           + +  LP + T + + D F   G   S  ++         +   G++ G AFV FE EE+
Sbjct: 1   LFVGNLPPDTTEEDLKDLFSKFGPIESIRIV---------RDETGRSKGFAFVEFEDEED 51

Query: 500 ADKALSK 506
           A+KAL  
Sbjct: 52  AEKALEA 58

(a.k.a. RRM, RBD, or RNP domain). The RRM motif is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and protein components of snRNPs. The motif also appears in a few single stranded DNA binding proteins. The RRM structure consists of four strands and two helices arranged in an alpha/beta sandwich, with a third helix present during RNA binding in some cases The C-terminal beta strand (4th strand) and final helix are hard to align and have been omitted in the SEED alignment The LA proteins have an N terminal rrm which is included in the seed. There is a second region towards the C terminus that has some features characteristic of a rrm but does not appear to have the important structural core of a rrm. The LA proteins are one of the main autoantigens in Systemic lupus erythematosus (SLE), an autoimmune disease. Length = 70

>gnl|CDD|240954 cd12510, RRM1_RBM12_like, RNA recognition motif 1 in RNA-binding protein RBM12, RBM12B and similar proteins

 Score = 46.9 bits (112), Expect = 7e-07
 Identities = 25/84 (29%), Positives = 44/84 (52%), Gaps = 11/84 (13%)

Query: 439 VIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEE 498
           V+IR++ LP+E  +  +  FF         + DG  GV  +    G   G+AF+ F  +E
Sbjct: 2   VVIRLQNLPWEAGSLDIRRFFSG-----LTIPDG--GVHII----GGEMGEAFIAFATDE 50

Query: 499 EADKALSKHKESIGIRYIELFRST 522
           +A  A+S+  ++I    ++LF S+
Sbjct: 51  DARLAMSRDGQTIKGSKVKLFLSS 74

This subfamily corresponds to the RRM1 of RBM12 and RBM12B. RBM12, also termed SH3/WW domain anchor protein in the nucleus (SWAN), is ubiquitously expressed. It contains five distinct RNA binding motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), two proline-rich regions, and several putative transmembrane domains. RBM12B show high sequence semilarity with RBM12. It contains five distinct RRMs as well. The biological roles of both RBM12 and RBM12B remain unclear. . Length = 74

>gnl|CDD|240668 cd00590, RRM_SF, RNA recognition motif (RRM) superfamily

 Score = 46.5 bits (111), Expect = 7e-07
 Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 11/80 (13%)

Query: 441 IRMRGLPYECTAKQVIDFFEA-GTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEE 499
           + +  LP + T + + + F   G   S  ++         +  DGK+ G AFV FE  E+
Sbjct: 1   LFVGNLPPDTTEEDLRELFSKFGEIESVRIV---------RDKDGKSKGFAFVEFESPED 51

Query: 500 ADKALSK-HKESIGIRYIEL 518
           A+KAL   + + +  R +++
Sbjct: 52  AEKALEALNGKELDGRKLKV 71

RRM, also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs). Length = 72

>gnl|CDD|222631 pfam14259, RRM_6, RNA recognition motif (a

 Score = 46.4 bits (111), Expect = 8e-07
 Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 10/78 (12%)

Query: 441 IRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEA 500
           + +R LP   T + + +FF         V    EGV  V+  D +  G AFV F   E+A
Sbjct: 1   LYVRNLPPSVTEEDLREFFS----PYGKV----EGVRLVRNKD-RPRGFAFVEFASPEDA 51

Query: 501 DKALSKHKE-SIGIRYIE 517
           + AL K     +  R + 
Sbjct: 52  EAALKKLNGLVLDGRTLR 69

k.a. RRM, RBD, or RNP domain). Length = 69

>gnl|CDD|241174 cd12730, RRM1_GRSF1, RNA recognition motif 1 in G-rich sequence factor 1 (GRSF-1) and similar proteins

 Score = 46.3 bits (110), Expect = 1e-06
 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 5/51 (9%)

Query: 80  GVHMVYNSQGQPSGEAFIQMDSEHSAYLAAQLRHNRNMIFGKKQRYIEVFQ 130
           GVH + N  G+P G+A I+++SE     A + +H   M     QRY+EV +
Sbjct: 33  GVHFLLNRDGKPRGDALIELESEEDVQKALE-QHRHYM----GQRYVEVRE 78

This subgroup corresponds to the RRM1 of GRSF-1, a cytoplasmic poly(A)+ mRNA binding protein which interacts with RNA in a G-rich element-dependent manner. It may function in RNA packaging, stabilization of RNA secondary structure, or other macromolecular interactions. GRSF-1 contains three potential RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), which are responsible for the RNA binding. In addition, GRSF-1 has two auxiliary domains, an acidic alpha-helical domain and an N-terminal alanine-rich region, that may play a role in protein-protein interactions and provide binding specificity. . Length = 79

>gnl|CDD|241175 cd12731, RRM2_hnRNPH_hnRNPH2_hnRNPF, RNA recognition motif 2 in heterogeneous nuclear ribonucleoprotein hnRNP H, hnRNP H2, hnRNP F and similar proteins

 Score = 46.2 bits (109), Expect = 1e-06
 Identities = 22/51 (43%), Positives = 31/51 (60%)

Query: 367 GVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGED 417
           G+ L +   GR  GEA V+F  QE  + ALK+HK  I  RYIE+ K++  +
Sbjct: 31  GITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE 81

This subgroup corresponds to the RRM2 of hnRNP H (also termed mcs94-1), hnRNP H2 (also termed FTP-3 or hnRNP H') and hnRNP F. These represent a group of nuclear RNA binding proteins that play important roles in the regulation of alternative splicing decisions. hnRNP H and hnRNP F are two closely related proteins, both of which bind to the RNA sequence DGGGD. They are present in a complex with the tissue-specific splicing factor Fox2, and regulate the alternative splicing of the fibroblast growth factor receptor 2 (FGFR2) transcripts. The presence of Fox 2 can allows hnRNP H and hnRNP F to better compete with the SR protein ASF/SF2 for binding to FGFR2 exon IIIc. Thus, hnRNP H and hnRNP F can function as potent silencers of FGFR2 exon IIIc inclusion through an interaction with the exonic GGG motifs. Furthermore, hnRNP H and hnRNP H2 are almost identical; both have been found to bind nuclear-matrix proteins. hnRNP H activates exon inclusion by binding G-rich intronic elements downstream of the 5' splice site in the transcripts of c-src, human immunodeficiency virus type 1 (HIV-1), Bcl-X, GRIN1, and myelin. It silences exons when bound to exonic elements in the transcripts of beta-tropomyosin, HIV-1, and alpha-tropomyosin. hnRNP H2 has been implicated in pre-mRNA 3' end formation. Members in this family contain three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). RRM1 and RRM2 are responsible for the binding to the RNA at DGGGD motifs, and they play an important role in efficiently silencing the exon. In addition, the family members have an extensive glycine-rich region near the C-terminus, which may allow them to homo- or heterodimerize. . Length = 83

>gnl|CDD|241180 cd12736, RRM1_ESRP1, RNA recognition motif 1 in epithelial splicing regulatory protein 1 (ESRP1) and similar proteins

 Score = 45.4 bits (107), Expect = 2e-06
 Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 5/61 (8%)

Query: 75  NIVYQGVHMVYNSQGQPSGEAFIQMDSEHSAYLAAQLRHNRNMIFGKKQRYIEVFQCSGE 134
           NI   G  +  N+QG+ +GEA ++  SE    LA Q RH  +M      RYIEV++ +GE
Sbjct: 29  NIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQ-RHKHHM----GNRYIEVYKATGE 83

Query: 135 D 135
           D
Sbjct: 84  D 84

This subgroup corresponds to the RRM1 of ESRP1, also termed RNA-binding motif protein 35A (RBM35A), which has been identified as an epithelial cell type-specific regulator of fibroblast growth factor receptor 2 (FGFR2) splicing. It is required for expression of epithelial FGFR2-IIIb and the regulation of CD44, CTNND1 (p120-Catenin) and ENAH (hMena) splicing. It enhances epithelial-specific exons of CD44 and ENAH, silences mesenchymal exons of CTNND1, or both within FGFR2. Additional research indicated that ESRP1 functions as a tumor suppressor in colon cancer cells. It may be involved in posttranscriptional regulation of various genes by exerting a differential effect on protein translation via 5' untranslated regions (UTRs) of mRNAs. ESRP1 contains three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). . Length = 85

>gnl|CDD|241188 cd12744, RRM1_RBM12B, RNA recognition motif 1 in RNA-binding protein 12B (RBM12B) and similar proteins

 Score = 45.6 bits (108), Expect = 2e-06
 Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 11/89 (12%)

Query: 439 VIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEE 498
           V+IR++GLP    ++ +  FF         + DG  GV  +    G   G+AF++F  +E
Sbjct: 2   VVIRLQGLPVVAGSEDIRHFF-----TGLRIPDG--GVHII----GGELGEAFIIFATDE 50

Query: 499 EADKALSKHKESIGIRYIELFRSTTAEVQ 527
           +A +A+S+    I    +ELF S+ AE+Q
Sbjct: 51  DARRAMSRSGGFIKDSTVELFLSSKAEMQ 79

This subgroup corresponds to the RRM1 of RBM12B which contains five distinct RNA binding motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). Its biological role remains unclear. . Length = 79

>gnl|CDD|240949 cd12505, RRM2_GRSF1, RNA recognition motif 2 in G-rich sequence factor 1 (GRSF-1) and similar proteins

 Score = 45.1 bits (107), Expect = 3e-06
 Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 9/66 (13%)

Query: 65  ILEFLGEFASNIVYQGVHMVYNSQGQPSGEAFIQMDS-EHSAYLAAQLRHNRNMIFGKKQ 123
           I++F      +IV  GV +V N +G+ +GEA++Q  + E +    A L+H   +      
Sbjct: 18  IIDFFRGL--DIVDDGVVIVLNRRGRKTGEAYVQFATPEMAN--KALLKHREEI----GN 69

Query: 124 RYIEVF 129
           RYIEVF
Sbjct: 70  RYIEVF 75

This subfamily corresponds to the RRM2 of GRSF-1, a cytoplasmic poly(A)+ mRNA binding protein which interacts with RNA in a G-rich element-dependent manner. It may function in RNA packaging, stabilization of RNA secondary structure, or other macromolecular interactions. GRSF-1 contains three potential RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), which are responsible for the RNA binding. In addition, GRSF-1 has two auxiliary domains, an acidic alpha-helical domain and an N-terminal alanine-rich region, that may play a role in protein-protein interactions and provide binding specificity. . Length = 75

>gnl|CDD|240955 cd12511, RRM2_RBM12_like, RNA recognition motif 2 in RNA-binding protein RBM12, RBM12B and similar proteins

 Score = 45.2 bits (107), Expect = 3e-06
 Identities = 18/47 (38%), Positives = 24/47 (51%)

Query: 367 GVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKA 413
            V       GR NG AIV+F   +    ALKRH+  +  RYIE+  +
Sbjct: 27  DVIFLKRHNGRNNGNAIVKFATFQDAKEALKRHRELMGSRYIELMLS 73

This subfamily corresponds to the RRM2 of RBM12 and RBM12B. RBM12, also termed SH3/WW domain anchor protein in the nucleus (SWAN), is ubiquitously expressed. It contains five distinct RNA binding motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), two proline-rich regions, and several putative transmembrane domains. RBM12B shows high sequence semilarity with RBM12. It contains five distinct RRMs as well. The biological roles of both RBM12 and RBM12B remain unclear. . Length = 73

>gnl|CDD|240953 cd12509, RRM3_ESRPs_Fusilli, RNA recognition motif 3 in epithelial splicing regulatory protein ESRP1, ESRP2, Drosophila RNA-binding protein Fusilli and similar proteins

 Score = 44.0 bits (104), Expect = 7e-06
 Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 1/47 (2%)

Query: 365 LGGVALCLSAFGRRNGEAIVRFIDQEHRDM-ALKRHKHHIDKRYIEV 410
             GV + L+A GR +G+A ++ +  E     A + HKHH+ +RYIEV
Sbjct: 31  PQGVHMVLNAQGRPSGDAFIQMLSAEFATRAANELHKHHMGERYIEV 77

This subfamily corresponds to the RRM3 of ESRPs and Fusilli. ESRP1 (also termed RBM35A) and ESRP2 (also termed RBM35B) are epithelial-specific RNA binding proteins that promote splicing of the epithelial variant of the fibroblast growth factor receptor 2 (FGFR2), ENAH (also termed hMena), CD44 and CTNND1 (also termed p120-Catenin) transcripts. They are highly conserved paralogs and specifically bind to GU-rich binding site. ESRP1 and ESRP2 contain three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). The family also includes Drosophila fusilli (fus) gene encoding RNA-binding protein Fusilli. Loss of fusilli activity causes lethality during embryogenesis in flies. Drosophila Fusilli can regulate endogenous FGFR2 splicing and functions as a splicing factor. Fusilli shows high sequence homology to ESRPs and contains three RRMs as well. It also has an N-terminal domain with unknown function and a C-terminal domain particularly rich in alanine, glutamine, and serine. . Length = 81

>gnl|CDD|240951 cd12507, RRM1_ESRPs_Fusilli, RNA recognition motif 1 in epithelial splicing regulatory protein ESRP1, ESRP2, Drosophila RNA-binding protein Fusilli and similar proteins

 Score = 44.0 bits (104), Expect = 7e-06
 Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 5/56 (8%)

Query: 75  NIVYQGVHMVYNSQGQPSGEAFIQMDSEHSAYLAAQLRHNRNMIFGKKQRYIEVFQ 130
           NI   GV +  ++QG+ +GEA I+   +    LA Q RH  +M  G   RYIEV++
Sbjct: 24  NIAKGGVALCLSAQGRRNGEALIRFVDQEHRDLALQ-RHKHHM--GT--RYIEVYK 74

This subfamily corresponds to the RRM1 of ESRPs and Fusilli. ESRP1 (also termed RBM35A) and ESRP2 (also termed RBM35B). These are epithelial-specific RNA binding proteins that promote splicing of the epithelial variant of the fibroblast growth factor receptor 2 (FGFR2), ENAH (also termed hMena), CD44 and CTNND1 (also termed p120-Catenin) transcripts. They are highly conserved paralogs and specifically bind to GU-rich binding site. ESRP1 and ESRP2 contain three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). The family also includes Drosophila fusilli (fus) gene encoding RNA-binding protein Fusilli. Loss of fusilli activity causes lethality during embryogenesis in flies. Drosophila Fusilli can regulate endogenous fibroblast growth factor receptor 2 (FGFR2) splicing and functions as a splicing factor. It shows high sequence homology to ESRPs and contains three RRMs as well. It also has an N-terminal domain with unknown function and a C-terminal domain particularly rich in alanine, glutamine, and serine. . Length = 75

>gnl|CDD|240948 cd12504, RRM2_hnRNPH_like, RNA recognition motif 2 in heterogeneous nuclear ribonucleoprotein (hnRNP) H protein family

 Score = 43.9 bits (104), Expect = 7e-06
 Identities = 20/47 (42%), Positives = 28/47 (59%)

Query: 367 GVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKA 413
           G+ L +   GR  GEA V+F  QE  + AL +HK  I  RYIE+ ++
Sbjct: 30  GITLPMDYRGRSTGEAYVQFASQESAERALGKHKEKIGHRYIEIFRS 76

This subfamily corresponds to the RRM2 of hnRNP H protein family which includes hnRNP H (also termed mcs94-1), hnRNP H2 (also termed FTP-3 or hnRNP H'), hnRNP F and hnRNP H3 (also termed hnRNP 2H9). They represent a group of nuclear RNA binding proteins that are involved in pre-mRNA processing, having similar RNA binding affinities and specifically recognizing the sequence GGGA. They can either stimulate or repress splicing upon binding to a GGG motif. hnRNP H binds to the RNA substrate in the presence or absence of these proteins, whereas hnRNP F binds to the nuclear mRNA only in the presence of cap-binding proteins. Furthermore, hnRNP H and hnRNP H2 are almost identical; both have been found to bind nuclear-matrix proteins. hnRNP H activates exon inclusion by binding G-rich intronic elements downstream of the 5' splice site in the transcripts of c-src, human immunodeficiency virus type 1 (HIV-1), Bcl-X, GRIN1, and myelin. It silences exons when bound to exonic elements in the transcripts of beta-tropomyosin, HIV-1, and alpha-tropomyosin. hnRNP H2 has been implicated in pre-mRNA 3' end formation. hnRNP H3 may be involved in the splicing arrest induced by heat shock. Most family members contain three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), except for hnRNP H3, in which the RRM1 is absent. RRM1 and RRM2 are responsible for the binding to the RNA at DGGGD motifs, and they play an important role in efficiently silencing the exon. Members in this family can regulate the alternative splicing of the fibroblast growth factor receptor 2 (FGFR2) transcripts, and function as silencers of FGFR2 exon IIIc through an interaction with the exonic GGG motifs. The lack of RRM1 could account for the reduced silencing activity within hnRNP H3. In addition, the family members have an extensive glycine-rich region near the C-terminus, which may allow them to homo- or heterodimerize. . Length = 77

>gnl|CDD|241176 cd12732, RRM2_hnRNPH3, RNA recognition motif 2 in heterogeneous nuclear ribonucleoprotein H3 (hnRNP H3) and similar proteins

 Score = 44.2 bits (104), Expect = 9e-06
 Identities = 20/48 (41%), Positives = 29/48 (60%)

Query: 367 GVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKAN 414
           G+ L +   GR  GEA V+F  +E  + AL +HK  I  RYIE+ K++
Sbjct: 48  GITLTMDYQGRSTGEAFVQFASKEIAENALGKHKERIGHRYIEIFKSS 95

This subgroup corresponds to the RRM2 of hnRNP H3 (also termed hnRNP 2H9), a nuclear RNA binding protein that belongs to the hnRNP H protein family that also includes hnRNP H (also termed mcs94-1), hnRNP H2 (also termed FTP-3 or hnRNP H') and hnRNP F. This family is involved in mRNA processing and exhibit extensive sequence homology. Currently, little is known about the functions of hnRNP H3 except for its role in the splicing arrest induced by heat shock. In addition, the typical hnRNP H proteins contain contain three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), except for hnRNP H3, in which the RRM1 is absent. RRM1 and RRM2 are responsible for the binding to the RNA at DGGGD motifs, and play an important role in efficiently silencing the exon. Members in this family can regulate the alternative splicing of the fibroblast growth factor receptor 2 (FGFR2) transcripts, and function as silencers of FGFR2 exon IIIc through an interaction with the exonic GGG motifs. The lack of RRM1 could account for the reduced silencing activity within hnRNP H3. In addition, like other hnRNP H protein family members, hnRNP H3 has an extensive glycine-rich region near the C-terminus, which may allow it to homo- or heterodimerize. . Length = 96

>gnl|CDD|240837 cd12391, RRM1_SART3, RNA recognition motif 1 in squamous cell carcinoma antigen recognized by T-cells 3 (SART3) and similar proteins

 Score = 43.4 bits (103), Expect = 1e-05
 Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 10/70 (14%)

Query: 446 LPYECTAKQVIDFFEAGTENSC-NVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKAL 504
           L Y     ++   F       C  + D    V  VK   GK+ G A+V FE EE   +AL
Sbjct: 7   LDYSVPEDELRKLFS-----KCGEITD----VRLVKNYKGKSKGYAYVEFENEESVQEAL 57

Query: 505 SKHKESIGIR 514
              +E I  R
Sbjct: 58  KLDRELIKGR 67

This subfamily corresponds to the RRM1 of SART3, also termed Tat-interacting protein of 110 kDa (Tip110), an RNA-binding protein expressed in the nucleus of the majority of proliferating cells, including normal cells and malignant cells, but not in normal tissues except for the testes and fetal liver. It is involved in the regulation of mRNA splicing probably via its complex formation with RNA-binding protein with a serine-rich domain (RNPS1), a pre-mRNA-splicing factor. SART3 has also been identified as a nuclear Tat-interacting protein that regulates Tat transactivation activity through direct interaction and functions as an important cellular factor for HIV-1 gene expression and viral replication. In addition, SART3 is required for U6 snRNP targeting to Cajal bodies. It binds specifically and directly to the U6 snRNA, interacts transiently with the U6 and U4/U6 snRNPs, and promotes the reassembly of U4/U6 snRNPs after splicing in vitro. SART3 contains an N-terminal half-a-tetratricopeptide repeat (HAT)-rich domain, a nuclearlocalization signal (NLS) domain, and two C-terminal RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). . Length = 72

>gnl|CDD|240946 cd12502, RRM2_RMB19, RNA recognition motif 2 in RNA-binding protein 19 (RBM19) and similar proteins

 Score = 42.4 bits (100), Expect = 2e-05
 Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 9/67 (13%)

Query: 63  EHILEFLGEFASNIVYQGVHMVYNSQGQPSGEAFIQMDSEHSAYLAAQLRHNRNMIFGKK 122
           +HI EF     S +    + +V N  G+ +G AF+ + SE    L   L+ N++ + G  
Sbjct: 15  KHIREFF----SPLKPVAIRIVKNDHGRKTGFAFVDLKSE--EDLKKALKRNKDYMGG-- 66

Query: 123 QRYIEVF 129
            RYIE+F
Sbjct: 67  -RYIELF 72

This subfamily corresponds to the RRM2 of RBM19, also termed RNA-binding domain-1 (RBD-1), a nucleolar protein conserved in eukaryotes. It is involved in ribosome biogenesis by processing rRNA and is also essential for preimplantation development. RBM19 has a unique domain organization containing 6 conserved RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). . Length = 72

>gnl|CDD|241182 cd12738, RRM1_Fusilli, RNA recognition motif 1 in Drosophila RNA-binding protein Fusilli and similar proteins

 Score = 42.6 bits (100), Expect = 3e-05
 Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 5/61 (8%)

Query: 75  NIVYQGVHMVYNSQGQPSGEAFIQMDSEHSAYLAAQLRHNRNMIFGKKQRYIEVFQCSGE 134
           NI   GV +  N QG+ +GEA ++        LA + RH  ++     QRYIEV++ +GE
Sbjct: 24  NIAKGGVALCLNPQGRRNGEALVRFTCTEHRDLALK-RHKHHI----GQRYIEVYKATGE 78

Query: 135 D 135
           D
Sbjct: 79  D 79

This subgroup corresponds to the RRM1 of RNA-binding protein Fusilli which is encoded by Drosophila fusilli (fus) gene. Loss of Fusilli activity causes lethality during embryogenesis in flies. Drosophila Fusilli can regulate endogenous fibroblast growth factor receptor 2 (FGFR2) splicing and functions as a splicing factor. Fusilli contains three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), an N-terminal domain with unknown function and a C-terminal domain particularly rich in alanine, glutamine, and serine. . Length = 80

>gnl|CDD|240830 cd12384, RRM_RBM24_RBM38_like, RNA recognition motif in eukaryotic RNA-binding protein RBM24, RBM38 and similar proteins

 Score = 41.8 bits (99), Expect = 3e-05
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 9/65 (13%)

Query: 441 IRMRGLPYECTAKQVIDFFEA-GTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEE 499
           I + GLPY  T   +  +F   G        + EE V+   +  GK+ G  FV F+ +E 
Sbjct: 3   IFVGGLPYHTTDDSLRKYFSQFG--------EIEEAVVITDRQTGKSRGYGFVTFKDKES 54

Query: 500 ADKAL 504
           A++A 
Sbjct: 55  AERAC 59

This subfamily corresponds to the RRM of RBM24 and RBM38 from vertebrate, SUPpressor family member SUP-12 from Caenorhabditis elegans and similar proteins. Both, RBM24 and RBM38, are preferentially expressed in cardiac and skeletal muscle tissues. They regulate myogenic differentiation by controlling the cell cycle in a p21-dependent or -independent manner. RBM24, also termed RNA-binding region-containing protein 6, interacts with the 3'-untranslated region (UTR) of myogenin mRNA and regulates its stability in C2C12 cells. RBM38, also termed CLL-associated antigen KW-5, or HSRNASEB, or RNA-binding region-containing protein 1(RNPC1), or ssDNA-binding protein SEB4, is a direct target of the p53 family. It is required for maintaining the stability of the basal and stress-induced p21 mRNA by binding to their 3'-UTRs. It also binds the AU-/U-rich elements in p63 3'-UTR and regulates p63 mRNA stability and activity. SUP-12 is a novel tissue-specific splicing factor that controls muscle-specific splicing of the ADF/cofilin pre-mRNA in C. elegans. All family members contain a conserved RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain). . Length = 76

>gnl|CDD|240948 cd12504, RRM2_hnRNPH_like, RNA recognition motif 2 in heterogeneous nuclear ribonucleoprotein (hnRNP) H protein family

 Score = 42.0 bits (99), Expect = 4e-05
 Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 7/70 (10%)

Query: 63  EHILEFLGEFASNIVYQGVHMVYNSQGQPSGEAFIQMDSEHSAYLAAQLRHNRNMIFGKK 122
           E I +F       IV  G+ +  + +G+ +GEA++Q  S+ SA  A   +H   +     
Sbjct: 15  EEIAQFFSGL--EIVPNGITLPMDYRGRSTGEAYVQFASQESAERALG-KHKEKI----G 67

Query: 123 QRYIEVFQCS 132
            RYIE+F+ S
Sbjct: 68  HRYIEIFRSS 77

This subfamily corresponds to the RRM2 of hnRNP H protein family which includes hnRNP H (also termed mcs94-1), hnRNP H2 (also termed FTP-3 or hnRNP H'), hnRNP F and hnRNP H3 (also termed hnRNP 2H9). They represent a group of nuclear RNA binding proteins that are involved in pre-mRNA processing, having similar RNA binding affinities and specifically recognizing the sequence GGGA. They can either stimulate or repress splicing upon binding to a GGG motif. hnRNP H binds to the RNA substrate in the presence or absence of these proteins, whereas hnRNP F binds to the nuclear mRNA only in the presence of cap-binding proteins. Furthermore, hnRNP H and hnRNP H2 are almost identical; both have been found to bind nuclear-matrix proteins. hnRNP H activates exon inclusion by binding G-rich intronic elements downstream of the 5' splice site in the transcripts of c-src, human immunodeficiency virus type 1 (HIV-1), Bcl-X, GRIN1, and myelin. It silences exons when bound to exonic elements in the transcripts of beta-tropomyosin, HIV-1, and alpha-tropomyosin. hnRNP H2 has been implicated in pre-mRNA 3' end formation. hnRNP H3 may be involved in the splicing arrest induced by heat shock. Most family members contain three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), except for hnRNP H3, in which the RRM1 is absent. RRM1 and RRM2 are responsible for the binding to the RNA at DGGGD motifs, and they play an important role in efficiently silencing the exon. Members in this family can regulate the alternative splicing of the fibroblast growth factor receptor 2 (FGFR2) transcripts, and function as silencers of FGFR2 exon IIIc through an interaction with the exonic GGG motifs. The lack of RRM1 could account for the reduced silencing activity within hnRNP H3. In addition, the family members have an extensive glycine-rich region near the C-terminus, which may allow them to homo- or heterodimerize. . Length = 77

>gnl|CDD|241190 cd12746, RRM2_RBM12B, RNA recognition motif 2 in RNA-binding protein 12B (RBM12B) and similar proteins

 Score = 41.7 bits (98), Expect = 4e-05
 Identities = 14/43 (32%), Positives = 26/43 (60%)

Query: 376 GRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGEDF 418
           G  NG ++V+F  +E     LKR + ++  RYIE+++   E++
Sbjct: 36  GLNNGNSMVKFATKEDAIEGLKRDRQYMGSRYIEISRTTEEEW 78

This subgroup corresponds to the RRM2 of RBM12B which contains five distinct RNA binding motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). Its biological role remains unclear. . Length = 78

>gnl|CDD|240958 cd12514, RRM4_RBM12_like, RNA recognition motif 4 in RNA-binding protein RBM12, RBM12B and similar proteins

 Score = 41.5 bits (98), Expect = 4e-05
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 2/51 (3%)

Query: 65  ILEFLGEFASNIVYQGVHMVYNSQGQPSGEAFIQMDSEHSAYLAAQLRHNR 115
           +L F    A  I  QG+H++Y+  G+  GEA+++  SE  A  A +L   +
Sbjct: 16  VLAFFAGIA--IAEQGIHILYDKTGKTLGEAYVEFVSEEDAMRAERLHRKK 64

This subfamily corresponds to the RRM4 of RBM12 and RBM12B. RBM12, also termed SH3/WW domain anchor protein in the nucleus (SWAN), is ubiquitously expressed. It contains five distinct RNA binding motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), two proline-rich regions, and several putative transmembrane domains. RBM12B show high sequence semilarity with RBM12. It contains five distinct RRMs as well. The biological roles of both RBM12 and RBM12B remain unclear. . Length = 73

>gnl|CDD|241181 cd12737, RRM1_ESRP2, RNA recognition motif 1 in epithelial splicing regulatory protein 2 (ESRP2) and similar proteins

 Score = 41.9 bits (98), Expect = 5e-05
 Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 5/61 (8%)

Query: 75  NIVYQGVHMVYNSQGQPSGEAFIQMDSEHSAYLAAQLRHNRNMIFGKKQRYIEVFQCSGE 134
           NI   GV +  N+QG+ +GEA ++  +     LA Q RH  +M      RYIEV++ +GE
Sbjct: 24  NIAKGGVALCLNAQGRRNGEALVRFVNSEQRDLALQ-RHKHHM----GSRYIEVYKATGE 78

Query: 135 D 135
           +
Sbjct: 79  E 79

This subgroup corresponds to the RRM1 of ESRP2, also termed RNA-binding motif protein 35B (RBM35B), which has been identified as an epithelial cell type-specific regulator of fibroblast growth factor receptor 2 (FGFR2) splicing. It is required for expression of epithelial FGFR2-IIIb and the regulation of CD44, CTNND1 (also termed p120-Catenin) and ENAH (also termed hMena) splicing. It enhances epithelial-specific exons of CD44 and ENAH, silences mesenchymal exons of CTNND1, or both within FGFR2. ESRP2 contains three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). . Length = 80

>gnl|CDD|240896 cd12450, RRM1_NUCLs, RNA recognition motif 1 found in nucleolin-like proteins mainly from plants

 Score = 41.5 bits (98), Expect = 5e-05
 Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 10/77 (12%)

Query: 441 IRMRGLPYECTAKQVIDFF-EAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEE 499
           + +  L +      + +FF E G      V+D    V   +  DG++ G   V F  EE 
Sbjct: 2   LFVGNLSWSAEQDDLEEFFKECGE-----VVD----VRIAQDDDGRSKGFGHVEFATEEG 52

Query: 500 ADKALSKHKESIGIRYI 516
           A KAL K  E +  R I
Sbjct: 53  AQKALEKSGEELLGREI 69

This subfamily corresponds to the RRM1 of a group of plant nucleolin-like proteins, including nucleolin 1 (also termed protein nucleolin like 1) and nucleolin 2 (also termed protein nucleolin like 2, or protein parallel like 1). They play roles in the regulation of ribosome synthesis and in the growth and development of plants. Like yeast nucleolin, nucleolin-like proteins possess two RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). . Length = 77

>gnl|CDD|241187 cd12743, RRM3_Fusilli, RNA recognition motif 3 in Drosophila RNA-binding protein Fusilli and similar proteins

 Score = 41.0 bits (96), Expect = 1e-04
 Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 10/87 (11%)

Query: 441 IRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEA 500
           IR+RGLPYE   + +++F     + +  ++   +GV  V    G+ +G+AF+  + E+ A
Sbjct: 4   IRLRGLPYEAQVEHILEFLG---DFAKMIV--FQGVHMVYNAQGQPSGEAFIQMDSEQSA 58

Query: 501 DKALSK---HKESIG--IRYIELFRST 522
                +        G   RYIE+F+ +
Sbjct: 59  SACAQQRHNRYMVFGKKQRYIEVFQCS 85

This subgroup corresponds to the RRM3 of RNA-binding protein Fusilli which is encoded by Drosophila fusilli (fus) gene. Loss of Fusilli activity causes lethality during embryogenesis in flies. Drosophila Fusilli can regulate endogenous fibroblast growth factor receptor 2 (FGFR2) splicing and functions as a splicing factor. Fusilli contains three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), an N-terminal domain with unknown function and a C-terminal domain particularly rich in alanine, glutamine, and serine. . Length = 85

>gnl|CDD|241174 cd12730, RRM1_GRSF1, RNA recognition motif 1 in G-rich sequence factor 1 (GRSF-1) and similar proteins

 Score = 40.6 bits (95), Expect = 1e-04
 Identities = 16/47 (34%), Positives = 29/47 (61%)

Query: 364 GLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEV 410
           G  GV   L+  G+  G+A++    +E    AL++H+H++ +RY+EV
Sbjct: 30  GENGVHFLLNRDGKPRGDALIELESEEDVQKALEQHRHYMGQRYVEV 76

This subgroup corresponds to the RRM1 of GRSF-1, a cytoplasmic poly(A)+ mRNA binding protein which interacts with RNA in a G-rich element-dependent manner. It may function in RNA packaging, stabilization of RNA secondary structure, or other macromolecular interactions. GRSF-1 contains three potential RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), which are responsible for the RNA binding. In addition, GRSF-1 has two auxiliary domains, an acidic alpha-helical domain and an N-terminal alanine-rich region, that may play a role in protein-protein interactions and provide binding specificity. . Length = 79

>gnl|CDD|222631 pfam14259, RRM_6, RNA recognition motif (a

 Score = 40.2 bits (95), Expect = 1e-04
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 8/70 (11%)

Query: 58  KKVLVEHILEFLGEFASNIVYQGVHMVYNSQGQPSGEAFIQMDSEHSAYLAAQLRHNRNM 117
             V  E + EF   +   +  +GV +V N   +P G AF++  S   A  AA  + N  +
Sbjct: 8   PSVTEEDLREFFSPY-GKV--EGVRLVRNKD-RPRGFAFVEFASPEDA-EAALKKLNGLV 62

Query: 118 IFGKKQRYIE 127
           + G   R + 
Sbjct: 63  LDG---RTLR 69

k.a. RRM, RBD, or RNP domain). Length = 69

>gnl|CDD|240950 cd12506, RRM3_hnRNPH_CRSF1_like, RNA recognition motif 3 in heterogeneous nuclear ribonucleoprotein hnRNP H protein family, G-rich sequence factor 1 (GRSF-1) and similar proteins

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 5/59 (8%)

Query: 71  EFASNIVYQGVHMVYNSQGQPSGEAFIQMDSEHSAYLAAQLRHNRNMIFGKKQRYIEVF 129
           EF S +    V + YN+ G+ +GEA ++  + H   +AA  +   +M      RYIE+F
Sbjct: 19  EFFSPLNPVNVRIEYNADGRATGEADVEFAT-HEDAVAAMSKDREHM----GHRYIELF 72

This subfamily corresponds to the RRM3 of hnRNP H proteins and GRSF-1. The hnRNP H protein family includes hnRNP H (also termed mcs94-1), hnRNP H2 (also termed FTP-3 or hnRNP H'), hnRNP F and hnRNP H3 (also termed hnRNP 2H9), which represent a group of nuclear RNA binding proteins that are involved in pre-mRNA processing. These proteins have similar RNA binding affinities and specifically recognize the sequence GGGA. They can either stimulate or repress splicing upon binding to a GGG motif. hnRNP H binds to the RNA substrate in the presence or absence of these proteins, whereas hnRNP F binds to the nuclear mRNA only in the presence of cap-binding proteins. hnRNP H and hnRNP H2 are almost identical; both have been found to bind nuclear-matrix proteins. hnRNP H activates exon inclusion by binding G-rich intronic elements downstream of the 5' splice site in the transcripts of c-src, human immunodeficiency virus type 1 (HIV-1), Bcl-X, GRIN1, and myelin. It silences exons when bound to exonic elements in the transcripts of beta-tropomyosin, HIV-1, and alpha-tropomyosin. hnRNP H2 has been implicated in pre-mRNA 3' end formation. hnRNP H3 may be involved in the splicing arrest induced by heat shock. Most family members contain three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), except for hnRNP H3, in which the RRM1 is absent. RRM1 and RRM2 are responsible for the binding to the RNA at DGGGD motifs, and they play an important role in efficiently silencing the exon. For instance, members in this family can regulate the alternative splicing of the fibroblast growth factor receptor 2 (FGFR2) transcripts, and function as silencers of FGFR2 exon IIIc through an interaction with the exonic GGG motifs. The lack of RRM1 could account for the reduced silencing activity within hnRNP H3. In addition, the family members have an extensive glycine-rich region near the C-terminus, which may allow them to homo- or heterodimerize. The family also includes a cytoplasmic poly(A)+ mRNA binding protein, GRSF-1, which interacts with RNA in a G-rich element-dependent manner. It may function in RNA packaging, stabilization of RNA secondary structure, or other macromolecular interactions. GRSF-1 also contains three potential RRMs responsible for the RNA binding, and two auxiliary domains (an acidic alpha-helical domain and an N-terminal alanine-rich region) that may play a role in protein-protein interactions and provide binding specificity. . Length = 75

>gnl|CDD|241191 cd12747, RRM2_RBM12, RNA recognition motif 2 in RNA-binding protein 12 (RBM12) and similar proteins

 Score = 39.4 bits (92), Expect = 3e-04
 Identities = 22/65 (33%), Positives = 34/65 (52%)

Query: 349 LSLLLNTIPGYEQVLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYI 408
            S+L + I  +   L +  + L     GR NG A+V+F        ALKR++  + +RYI
Sbjct: 11  FSVLEHDIRDFFHGLRIDAIHLLKDHVGRNNGNALVKFYSPHDTFEALKRNRMLMGQRYI 70

Query: 409 EVTKA 413
           EV+ A
Sbjct: 71  EVSPA 75

This subgroup corresponds to the RRM2 of RBM12, also termed SH3/WW domain anchor protein in the nucleus (SWAN), which is ubiquitously expressed. It contains five distinct RNA binding motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), two proline-rich regions, and several putative transmembrane domains. The biological role of RBM12 remains unclear. . Length = 75

>gnl|CDD|241173 cd12729, RRM1_hnRNPH_hnRNPH2_hnRNPF, RNA recognition motif 1 in heterogeneous nuclear ribonucleoprotein hnRNP H , hnRNP H2, hnRNP F and similar proteins

 Score = 39.1 bits (91), Expect = 4e-04
 Identities = 17/50 (34%), Positives = 27/50 (54%)

Query: 364 GLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKA 413
           G  G+    +  GR +GEA V    +E   +ALK+ +  +  RY+EV K+
Sbjct: 30  GASGIHFIYTREGRPSGEAFVELESEEDVKLALKKDRETMGHRYVEVFKS 79

This subgroup corresponds to the RRM1 of hnRNP H (also termed mcs94-1), hnRNP H2 (also termed FTP-3 or hnRNP H') and hnRNP F. These represent a group of nuclear RNA binding proteins that play important roles in the regulation of alternative splicing decisions. hnRNP H and hnRNP F are two closely related proteins, both of which bind to the RNA sequence DGGGD. They are present in a complex with the tissue-specific splicing factor Fox2, and regulate the alternative splicing of the fibroblast growth factor receptor 2 (FGFR2) transcripts. The presence of Fox 2 can allows hnRNP H and hnRNP F to better compete with the SR protein ASF/SF2 for binding to FGFR2 exon IIIc. Thus, hnRNP H and hnRNP F can function as potent silencers of FGFR2 exon IIIc inclusion through an interaction with the exonic GGG motifs. Furthermore, hnRNP H and hnRNP H2 are almost identical. Both of them have been found to bind nuclear-matrix proteins. hnRNP H activates exon inclusion by binding G-rich intronic elements downstream of the 5' splice site in the transcripts of c-src, human immunodeficiency virus type 1 (HIV-1), Bcl-X, GRIN1, and myelin. It silences exons when bound to exonic elements in the transcripts of beta-tropomyosin, HIV-1, and alpha-tropomyosin. hnRNP H2 has been implicated in pre-mRNA 3' end formation. Members in this family contain three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). RRM1 and RRM2 are responsible for the binding to the RNA at DGGGD motifs, and they play an important role in efficiently silencing the exon. In addition, the family members have an extensive glycine-rich region near the C-terminus, which may allow them to homo- or heterodimerize. . Length = 79

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 43.2 bits (102), Expect = 4e-04
 Identities = 33/185 (17%), Positives = 40/185 (21%), Gaps = 28/185 (15%)

Query: 162 GMLPHSSQPLYPQHNTQINPGLSHLDPLVNVHLTQALAQAQYAKSQQD-------NLMLM 214
           G  P           +Q  P       L    +   L Q Q A              M  
Sbjct: 127 GTAPKPEPQPPQAPESQPQPQTPAQKMLSLEEVEAQLQQRQQAPQLPQPPQQVLPQGMPP 186

Query: 215 NQIAAQQMAALNKPHNMALNGHTPTLIPAPSPNALMPPPLNSKSTTIPTNLPALPAVPTS 274
            Q A  Q     +P                 P   +P P  + +       P LP     
Sbjct: 187 RQAAFPQQGPPEQPPGYP--QPPQGHPEQVQPQQFLPAPSQAPAQ------PPLPPQL-- 236

Query: 275 GGYFPQFQLPINMNTAHLLQPMNTPFFFNMPRMPVTPQVLPKFPVHQLNQTPTVYTIPTP 334
               PQ   P       L QP        MP  P  P    + P     Q P        
Sbjct: 237 ----PQQPPP-------LQQPQFPGLSQQMPPPPPQPPQQQQQPPQPQAQPPPQNQPTPH 285

Query: 335 GNPVA 339
                
Sbjct: 286 PGLPQ 290

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|240737 cd12291, RRM1_La, RNA recognition motif 1 in La autoantigen (La or LARP3) and similar proteins

 Score = 38.7 bits (91), Expect = 5e-04
 Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 8/66 (12%)

Query: 443 MRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADK 502
           ++G P + T   + +FFE        V      +   +  D K  G  FV F+ EE+A K
Sbjct: 4   VKGFPKDATLDDIQEFFEKF----GKV----NNIRMRRDLDKKFKGSVFVEFKTEEDAKK 55

Query: 503 ALSKHK 508
            L K K
Sbjct: 56  FLEKEK 61

This subfamily corresponds to the RRM1 of La autoantigen, also termed Lupus La protein, or La ribonucleoprotein, or Sjoegren syndrome type B antigen (SS-B), a highly abundant nuclear phosphoprotein and well conserved in eukaryotes. It specifically binds the 3'-terminal UUU-OH motif of nascent RNA polymerase III transcripts and protects them from exonucleolytic degradation by 3' exonucleases. In addition, La can directly facilitate the translation and/or metabolism of many UUU-3' OH-lacking cellular and viral mRNAs, through binding internal RNA sequences within the untranslated regions of target mRNAs. La contains an N-terminal La motif (LAM), followed by two RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). It also possesses a short basic motif (SBM) and a nuclear localization signal (NLS) at the C-terminus. . Length = 72

>gnl|CDD|241009 cd12565, RRM1_MRD1, RNA recognition motif 1 in yeast multiple RNA-binding domain-containing protein 1 (MRD1) and similar proteins

 Score = 38.7 bits (91), Expect = 5e-04
 Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 10/67 (14%)

Query: 439 VIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEE 498
           +I++   LP   T  ++ + FE+  E    V D    V  ++  DGK+    FV F+ EE
Sbjct: 3   IIVK--NLPKYVTEDRLREHFESKGE----VTD----VKVMRTRDGKSRRFGFVGFKSEE 52

Query: 499 EADKALS 505
           +A +A+ 
Sbjct: 53  DAQQAVK 59

This subgroup corresponds to the RRM1 of MRD1 which is encoded by a novel yeast gene MRD1 (multiple RNA-binding domain). It is well-conserved in yeast and its homologs exist in all eukaryotes. MRD1 is present in the nucleolus and the nucleoplasm. It interacts with the 35 S precursor rRNA (pre-rRNA) and U3 small nucleolar RNAs (snoRNAs). MRD1 is essential for the initial processing at the A0-A2 cleavage sites in the 35 S pre-rRNA. It contains 5 conserved RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), which may play an important structural role in organizing specific rRNA processing events. . Length = 76

>gnl|CDD|240717 cd12271, RRM1_PHIP1, RNA recognition motif 1 in Arabidopsis thaliana phragmoplastin interacting protein 1 (PHIP1) and similar proteins

 Score = 38.5 bits (90), Expect = 5e-04
 Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 11/74 (14%)

Query: 445 GLPYECTAKQVIDFFE-AGTENSCNVMDGEEGVLFVKKPD-GKATGDAFVLFEKEEEADK 502
           G+PY  T  ++  +F   G     ++M       F   PD G+  G AF+ F+ EE A +
Sbjct: 5   GIPYYSTEDEIRSYFSYCGEIEELDLMT------F---PDTGRFRGIAFITFKTEEAAKR 55

Query: 503 ALSKHKESIGIRYI 516
           AL+   E +G R++
Sbjct: 56  ALALDGEDMGGRFL 69

This subfamily corresponds to the RRM1 of PHIP1. A. thaliana PHIP1 and its homologs represent a novel class of plant-specific RNA-binding proteins that may play a unique role in the polarized mRNA transport to the vicinity of the cell plate. The family members consist of multiple functional domains, including a lysine-rich domain (KRD domain) that contains three nuclear localization motifs (KKKR/NK), two RNA recognition motifs (RRMs), and three CCHC-type zinc fingers. PHIP1 is a peripheral membrane protein and is localized at the cell plate during cytokinesis in plants. In addition to phragmoplastin, PHIP1 interacts with two Arabidopsis small GTP-binding proteins, Rop1 and Ran2. However, PHIP1 interacted only with the GTP-bound form of Rop1 but not the GDP-bound form. It also binds specifically to Ran2 mRNA. . Length = 72

>gnl|CDD|240957 cd12513, RRM3_RBM12B, RNA recognition motif 3 in RNA-binding protein 12B (RBM12B) and similar proteins

 Score = 38.1 bits (89), Expect = 8e-04
 Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 7/79 (8%)

Query: 441 IRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEA 500
           I +  LP+    + +  FF        ++   +  + F+    GK T  AFV+F+   + 
Sbjct: 3   IHLENLPFSVEKRDIRAFFG-------DLDLPDSQITFLSDKKGKRTRSAFVMFKSLRDY 55

Query: 501 DKALSKHKESIGIRYIELF 519
             AL+ HK  +  R + +F
Sbjct: 56  CAALAHHKRVLYNREVYVF 74

This subgroup corresponds to the RRM3 of RBM12B which contains five distinct RNA binding motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). Its biological role remains unclear. . Length = 81

>gnl|CDD|240950 cd12506, RRM3_hnRNPH_CRSF1_like, RNA recognition motif 3 in heterogeneous nuclear ribonucleoprotein hnRNP H protein family, G-rich sequence factor 1 (GRSF-1) and similar proteins

 Score = 36.5 bits (85), Expect = 0.002
 Identities = 14/34 (41%), Positives = 18/34 (52%)

Query: 376 GRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIE 409
           GR  GEA V F   E    A+ + + H+  RYIE
Sbjct: 37  GRATGEADVEFATHEDAVAAMSKDREHMGHRYIE 70

This subfamily corresponds to the RRM3 of hnRNP H proteins and GRSF-1. The hnRNP H protein family includes hnRNP H (also termed mcs94-1), hnRNP H2 (also termed FTP-3 or hnRNP H'), hnRNP F and hnRNP H3 (also termed hnRNP 2H9), which represent a group of nuclear RNA binding proteins that are involved in pre-mRNA processing. These proteins have similar RNA binding affinities and specifically recognize the sequence GGGA. They can either stimulate or repress splicing upon binding to a GGG motif. hnRNP H binds to the RNA substrate in the presence or absence of these proteins, whereas hnRNP F binds to the nuclear mRNA only in the presence of cap-binding proteins. hnRNP H and hnRNP H2 are almost identical; both have been found to bind nuclear-matrix proteins. hnRNP H activates exon inclusion by binding G-rich intronic elements downstream of the 5' splice site in the transcripts of c-src, human immunodeficiency virus type 1 (HIV-1), Bcl-X, GRIN1, and myelin. It silences exons when bound to exonic elements in the transcripts of beta-tropomyosin, HIV-1, and alpha-tropomyosin. hnRNP H2 has been implicated in pre-mRNA 3' end formation. hnRNP H3 may be involved in the splicing arrest induced by heat shock. Most family members contain three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), except for hnRNP H3, in which the RRM1 is absent. RRM1 and RRM2 are responsible for the binding to the RNA at DGGGD motifs, and they play an important role in efficiently silencing the exon. For instance, members in this family can regulate the alternative splicing of the fibroblast growth factor receptor 2 (FGFR2) transcripts, and function as silencers of FGFR2 exon IIIc through an interaction with the exonic GGG motifs. The lack of RRM1 could account for the reduced silencing activity within hnRNP H3. In addition, the family members have an extensive glycine-rich region near the C-terminus, which may allow them to homo- or heterodimerize. The family also includes a cytoplasmic poly(A)+ mRNA binding protein, GRSF-1, which interacts with RNA in a G-rich element-dependent manner. It may function in RNA packaging, stabilization of RNA secondary structure, or other macromolecular interactions. GRSF-1 also contains three potential RRMs responsible for the RNA binding, and two auxiliary domains (an acidic alpha-helical domain and an N-terminal alanine-rich region) that may play a role in protein-protein interactions and provide binding specificity. . Length = 75

>gnl|CDD|240946 cd12502, RRM2_RMB19, RNA recognition motif 2 in RNA-binding protein 19 (RBM19) and similar proteins

 Score = 37.0 bits (86), Expect = 0.002
 Identities = 15/35 (42%), Positives = 21/35 (60%)

Query: 376 GRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEV 410
           GR+ G A V    +E    ALKR+K ++  RYIE+
Sbjct: 37  GRKTGFAFVDLKSEEDLKKALKRNKDYMGGRYIEL 71

This subfamily corresponds to the RRM2 of RBM19, also termed RNA-binding domain-1 (RBD-1), a nucleolar protein conserved in eukaryotes. It is involved in ribosome biogenesis by processing rRNA and is also essential for preimplantation development. RBM19 has a unique domain organization containing 6 conserved RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). . Length = 72

>gnl|CDD|240859 cd12413, RRM1_RBM28_like, RNA recognition motif 1 in RNA-binding protein 28 (RBM28) and similar proteins

 Score = 37.2 bits (87), Expect = 0.002
 Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 13/66 (19%)

Query: 444 RGLPYECTAKQVIDFF-EAGTENSCNVMDGEEGVLFV--KKPDGKATGDAFVLFEKEEEA 500
           R LPY+ T +Q+ +FF E G    C          FV   K   K  G  +V F  EE+A
Sbjct: 5   RNLPYDTTDEQLEEFFSEVGPIKRC----------FVVKDKGSKKCRGFGYVTFALEEDA 54

Query: 501 DKALSK 506
            +AL +
Sbjct: 55  KRALEE 60

This subfamily corresponds to the RRM1 of RBM28 and Nop4p. RBM28 is a specific nucleolar component of the spliceosomal small nuclear ribonucleoproteins (snRNPs), possibly coordinating their transition through the nucleolus. It specifically associates with U1, U2, U4, U5, and U6 small nuclear RNAs (snRNAs), and may play a role in the maturation of both small nuclear and ribosomal RNAs. RBM28 has four RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and an extremely acidic region between RRM2 and RRM3. The family also includes nucleolar protein 4 (Nop4p or Nop77p) encoded by YPL043W from Saccharomyces cerevisiae. It is an essential nucleolar protein involved in processing and maturation of 27S pre-rRNA and biogenesis of 60S ribosomal subunits. Nop4p also contains four RRMs. . Length = 79

>gnl|CDD|240846 cd12400, RRM_Nop6, RNA recognition motif in Saccharomyces cerevisiae nucleolar protein 6 (Nop6) and similar proteins

 Score = 36.9 bits (86), Expect = 0.002
 Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 7/71 (9%)

Query: 446 LPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS 505
           LPY+ TA+ ++  F        +V       L   K  GK+ G AFV F+  E   KAL 
Sbjct: 8   LPYDTTAEDLLAHF-KNAGAPPSVR------LLTDKKTGKSKGCAFVEFDTAEAMTKALK 60

Query: 506 KHKESIGIRYI 516
            H   +  R I
Sbjct: 61  LHHTLLKGRKI 71

This subfamily corresponds to the RRM of Nop6, also known as Ydl213c, a component of 90S pre-ribosomal particles in yeast S. cerevisiae. It is enriched in the nucleolus and is required for 40S ribosomal subunit biogenesis. Nop6 is a non-essential putative RNA-binding protein with two N-terminal putative nuclear localisation sequences (NLS-1 and NLS-2) and an RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain). It binds to the pre-rRNA early during transcription and plays an essential role in pre-rRNA processing. . Length = 74

>gnl|CDD|240860 cd12414, RRM2_RBM28_like, RNA recognition motif 2 in RNA-binding protein 28 (RBM28) and similar proteins

 Score = 36.8 bits (86), Expect = 0.002
 Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 10/66 (15%)

Query: 439 VIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEE 498
           +I+R   LP++CT        EA  +   +       V   +KPDGK  G AFV F  + 
Sbjct: 2   LIVR--NLPFKCT--------EADLKKLFSPFGFVWEVTIPRKPDGKKKGFAFVQFTSKA 51

Query: 499 EADKAL 504
           +A+KA+
Sbjct: 52  DAEKAI 57

This subfamily corresponds to the RRM2 of RBM28 and Nop4p. RBM28 is a specific nucleolar component of the spliceosomal small nuclear ribonucleoproteins (snRNPs), possibly coordinating their transition through the nucleolus. It specifically associates with U1, U2, U4, U5, and U6 small nuclear RNAs (snRNAs), and may play a role in the maturation of both small nuclear and ribosomal RNAs. RBM28 has four RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and an extremely acidic region between RRM2 and RRM3. The family also includes nucleolar protein 4 (Nop4p or Nop77p) encoded by YPL043W from Saccharomyces cerevisiae. It is an essential nucleolar protein involved in processing and maturation of 27S pre-rRNA and biogenesis of 60S ribosomal subunits. Nop4p also contains four RRMs. . Length = 76

>gnl|CDD|241175 cd12731, RRM2_hnRNPH_hnRNPH2_hnRNPF, RNA recognition motif 2 in heterogeneous nuclear ribonucleoprotein hnRNP H, hnRNP H2, hnRNP F and similar proteins

 Score = 36.5 bits (84), Expect = 0.003
 Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 7/74 (9%)

Query: 63  EHILEFLGEFASNIVYQGVHMVYNSQGQPSGEAFIQMDSEHSAYLAAQLRHNRNMIFGKK 122
           E I++F       IV  G+ +  + QG+ +GEAF+Q  S+  A  A  L+ ++  I    
Sbjct: 16  EEIVQFFSGL--EIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKA--LKKHKERI---G 68

Query: 123 QRYIEVFQCSGEDM 136
            RYIE+F+ S  ++
Sbjct: 69  HRYIEIFKSSRAEV 82

This subgroup corresponds to the RRM2 of hnRNP H (also termed mcs94-1), hnRNP H2 (also termed FTP-3 or hnRNP H') and hnRNP F. These represent a group of nuclear RNA binding proteins that play important roles in the regulation of alternative splicing decisions. hnRNP H and hnRNP F are two closely related proteins, both of which bind to the RNA sequence DGGGD. They are present in a complex with the tissue-specific splicing factor Fox2, and regulate the alternative splicing of the fibroblast growth factor receptor 2 (FGFR2) transcripts. The presence of Fox 2 can allows hnRNP H and hnRNP F to better compete with the SR protein ASF/SF2 for binding to FGFR2 exon IIIc. Thus, hnRNP H and hnRNP F can function as potent silencers of FGFR2 exon IIIc inclusion through an interaction with the exonic GGG motifs. Furthermore, hnRNP H and hnRNP H2 are almost identical; both have been found to bind nuclear-matrix proteins. hnRNP H activates exon inclusion by binding G-rich intronic elements downstream of the 5' splice site in the transcripts of c-src, human immunodeficiency virus type 1 (HIV-1), Bcl-X, GRIN1, and myelin. It silences exons when bound to exonic elements in the transcripts of beta-tropomyosin, HIV-1, and alpha-tropomyosin. hnRNP H2 has been implicated in pre-mRNA 3' end formation. Members in this family contain three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). RRM1 and RRM2 are responsible for the binding to the RNA at DGGGD motifs, and they play an important role in efficiently silencing the exon. In addition, the family members have an extensive glycine-rich region near the C-terminus, which may allow them to homo- or heterodimerize. . Length = 83

>gnl|CDD|240841 cd12395, RRM2_RBM34, RNA recognition motif 2 in RNA-binding protein 34 (RBM34) and similar proteins

 Score = 36.4 bits (85), Expect = 0.003
 Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 15/65 (23%)

Query: 446 LPYECTAKQVIDFFEAGTENSC-NVMDGEEGVLFVKKPD---GKATGDAFVLFEKEEEAD 501
           LP++   +++   FE      C +V    E V  V+      GK  G  +VLF+ ++   
Sbjct: 7   LPFDIEEEELRKHFE-----DCGDV----EAVRIVRDRKTGIGK--GFGYVLFKTKDSVA 55

Query: 502 KALSK 506
            AL  
Sbjct: 56  LALKL 60

This subfamily corresponds to the RRM2 of RBM34, a putative RNA-binding protein containing two RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). Although the function of RBM34 remains unclear currently, its RRM domains may participate in mRNA processing. RBM34 may act as an mRNA processing-related protein. . Length = 73

>gnl|CDD|223796 COG0724, COG0724, RNA-binding proteins (RRM domain) [General function prediction only]

 Score = 39.5 bits (91), Expect = 0.003
 Identities = 29/120 (24%), Positives = 48/120 (40%), Gaps = 14/120 (11%)

Query: 440 IIRMRGLPYECTAKQVIDFF-EAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEE 498
            + +  LPY+ T + + + F + G      ++          +  GK+ G AFV FE EE
Sbjct: 117 TLFVGNLPYDVTEEDLRELFKKFGPVKRVRLV--------RDRETGKSRGFAFVEFESEE 168

Query: 499 EADKALSKHKESIGIRYIELFRSTTAEVQQVLNKTMELPKNNSLTSSNNGLSAQQPMLSH 558
            A+KA+   +E  G       R    +  Q  ++      NN   S    LS  + +L  
Sbjct: 169 SAEKAI---EELNGKELEG--RPLRVQKAQPASQPRSELSNNLDASFAKKLSRGKALLLE 223

Length = 306

>gnl|CDD|241184 cd12740, RRM2_ESRP2, RNA recognition motif 2 in epithelial splicing regulatory protein 2 (ESRP2) and similar proteins

 Score = 36.9 bits (85), Expect = 0.004
 Identities = 18/46 (39%), Positives = 27/46 (58%)

Query: 376 GRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGEDFINV 421
           GR  G+A V F  +E+   ALK+HK  + KRYIE+ ++   +   V
Sbjct: 58  GRPTGDAFVLFACEEYAQNALKKHKGILGKRYIELFRSTAAEVQQV 103

This subgroup corresponds to the RRM2 of ESRP2, also termed RNA-binding motif protein 35B (RBM35B), which has been identified as an epithelial cell type-specific regulator of fibroblast growth factor receptor 2 (FGFR2) splicing. It is required for expression of epithelial FGFR2-IIIb and the regulation of CD44, CTNND1 (also termed p120-Catenin) and ENAH (also termed hMena) splicing. It enhances epithelial-specific exons of CD44 and ENAH, silences mesenchymal exons of CTNND1, or both within FGFR2. ESRP2 contains three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). . Length = 107

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	612
KOG1365|consensus	508		100.0
KOG4211|consensus	510		100.0
KOG4211|consensus	510		100.0
TIGR01661	352	ELAV_HUD_SF ELAV/HuD family splicing factor. These	99.96
TIGR01628	562	PABP-1234 polyadenylate binding protein, human typ	99.96
TIGR01628	562	PABP-1234 polyadenylate binding protein, human typ	99.96
KOG1365|consensus	508		99.95
KOG0127|consensus	678		99.94
TIGR01648	578	hnRNP-R-Q heterogeneous nuclear ribonucleoprotein	99.94
TIGR01622	457	SF-CC1 splicing factor, CC1-like family. A homolog	99.92
TIGR01642	509	U2AF_lg U2 snRNP auxilliary factor, large subunit,	99.91
TIGR01659	346	sex-lethal sex-lethal family splicing factor. This	99.91
KOG0117|consensus	506		99.91
TIGR01645	612	half-pint poly-U binding splicing factor, half-pin	99.91
TIGR01649	481	hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor	99.9
TIGR01649	481	hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor	99.9
TIGR01661	352	ELAV_HUD_SF ELAV/HuD family splicing factor. These	99.89
KOG4307|consensus	944		99.86
TIGR01648	578	hnRNP-R-Q heterogeneous nuclear ribonucleoprotein	99.86
KOG0123|consensus	369		99.86
KOG0148|consensus	321		99.84
KOG0123|consensus	369		99.82
TIGR01659	346	sex-lethal sex-lethal family splicing factor. This	99.79
KOG0145|consensus	360		99.79
KOG4205|consensus	311		99.79
KOG0131|consensus	203		99.78
KOG0127|consensus	678		99.77
KOG0148|consensus	321		99.77
KOG0144|consensus	510		99.75
TIGR01642	509	U2AF_lg U2 snRNP auxilliary factor, large subunit,	99.75
TIGR01622	457	SF-CC1 splicing factor, CC1-like family. A homolog	99.73
TIGR01645	612	half-pint poly-U binding splicing factor, half-pin	99.73
KOG0117|consensus	506		99.72
KOG0124|consensus	544		99.68
KOG0147|consensus	549		99.66
KOG0110|consensus	725		99.64
KOG0110|consensus	725		99.63
KOG0145|consensus	360		99.53
PLN03134	144	glycine-rich RNA-binding protein 4; Provisional	99.52
PF00076	70	RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or	99.48
KOG0109|consensus	346		99.47
PF14259	70	RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or	99.45
KOG4205|consensus	311		99.42
KOG4307|consensus	944		99.37
KOG0149|consensus	247		99.36
KOG4212|consensus	608		99.36
PLN03120	260	nucleic acid binding protein; Provisional	99.36
KOG0131|consensus	203		99.35
COG0724	306	RNA-binding proteins (RRM domain) [General functio	99.35
KOG0125|consensus	376		99.34
KOG0144|consensus	510		99.31
KOG0124|consensus	544		99.29
PLN03121	243	nucleic acid binding protein; Provisional	99.29
KOG0105|consensus	241		99.25
KOG0146|consensus	371		99.25
smart00362	72	RRM_2 RNA recognition motif.	99.23
KOG4212|consensus	608		99.19
cd00590	74	RRM RRM (RNA recognition motif), also known as RBD	99.16
KOG0109|consensus	346		99.15
smart00360	71	RRM RNA recognition motif.	99.14
KOG0122|consensus	270		99.12
KOG0105|consensus	241		99.12
KOG0106|consensus	216		99.11
PLN03213	759	repressor of silencing 3; Provisional	99.08
KOG0125|consensus	376		99.04
PLN03134	144	glycine-rich RNA-binding protein 4; Provisional	99.02
KOG0113|consensus	335		99.01
PF14259	70	RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or	99.01
KOG4207|consensus	256		98.97
KOG0108|consensus	435		98.97
KOG0121|consensus	153		98.96
PF00076	70	RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or	98.96
KOG0226|consensus	290		98.92
KOG0114|consensus	124		98.9
smart00361	70	RRM_1 RNA recognition motif.	98.89
KOG0126|consensus	219		98.87
COG0724	306	RNA-binding proteins (RRM domain) [General functio	98.87
KOG0149|consensus	247		98.83
PLN03120	260	nucleic acid binding protein; Provisional	98.81
KOG0111|consensus	298		98.72
KOG0107|consensus	195		98.7
KOG1548|consensus	382		98.7
PLN03121	243	nucleic acid binding protein; Provisional	98.7
KOG0128|consensus	881		98.69
KOG0130|consensus	170		98.68
KOG4206|consensus	221		98.68
KOG4206|consensus	221		98.68
KOG0147|consensus	549		98.65
smart00362	72	RRM_2 RNA recognition motif.	98.65
PF13893	56	RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or	98.63
smart00360	71	RRM RNA recognition motif.	98.58
KOG0122|consensus	270		98.56
KOG1457|consensus	284		98.56
KOG4210|consensus	285		98.54
cd00590	74	RRM RRM (RNA recognition motif), also known as RBD	98.52
smart00361	70	RRM_1 RNA recognition motif.	98.52
KOG0128|consensus	881		98.47
KOG1457|consensus	284		98.43
KOG0108|consensus	435		98.39
PLN03213	759	repressor of silencing 3; Provisional	98.37
KOG4208|consensus	214		98.36
KOG1190|consensus	492		98.34
KOG1190|consensus	492		98.34
KOG0121|consensus	153		98.33
KOG0113|consensus	335		98.33
KOG4207|consensus	256		98.33
KOG4454|consensus	267		98.29
KOG0533|consensus	243		98.28
KOG0106|consensus	216		98.26
PF13893	56	RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or	98.25
KOG0120|consensus	500		98.25
KOG0129|consensus	520		98.21
KOG0116|consensus	419		98.16
KOG4209|consensus	231		98.15
KOG0146|consensus	371		98.13
KOG0120|consensus	500		98.1
KOG0107|consensus	195		98.08
KOG0415|consensus	479		98.07
KOG0111|consensus	298		98.06
KOG0126|consensus	219		98.05
KOG4661|consensus	940		98.02
KOG0153|consensus	377		98.01
KOG0132|consensus	894		97.98
KOG0129|consensus	520		97.94
KOG1548|consensus	382		97.87
KOG0114|consensus	124		97.87
KOG4208|consensus	214		97.87
KOG0130|consensus	170		97.72
KOG1456|consensus	494		97.57
KOG0226|consensus	290		97.55
PF04059	97	RRM_2: RNA recognition motif 2; InterPro: IPR00720	97.55
KOG1456|consensus	494		97.52
KOG4454|consensus	267		97.44
KOG4210|consensus	285		97.38
KOG4209|consensus	231		97.12
KOG0533|consensus	243		96.97
KOG0116|consensus	419		96.95
KOG4849|consensus	498		96.91
PF08777	105	RRM_3: RNA binding motif; InterPro: IPR014886 This	96.9
KOG4661|consensus	940		96.82
KOG0415|consensus	479		96.79
KOG0153|consensus	377		96.7
PF11608	90	Limkain-b1: Limkain b1; InterPro: IPR024582 This e	96.6
KOG0132|consensus	894		96.59
KOG4660|consensus	549		96.49
KOG1995|consensus	351		96.46
KOG1924|consensus	1102		96.31
PF05172	100	Nup35_RRM: Nup53/35/40-type RNA recognition motif;	95.71
KOG0112|consensus	975		95.62
KOG0115|consensus	275		95.61
KOG0151|consensus	877		95.54
KOG1924|consensus	1102		95.05
COG5175	480	MOT2 Transcriptional repressor [Transcription]	94.93
PF14605	53	Nup35_RRM_2: Nup53/35/40-type RNA recognition moti	94.79
PF04059	97	RRM_2: RNA recognition motif 2; InterPro: IPR00720	94.48
KOG2314|consensus	698		94.43
PF11608	90	Limkain-b1: Limkain b1; InterPro: IPR024582 This e	94.32
PF10309	62	DUF2414: Protein of unknown function (DUF2414); In	93.92
KOG1995|consensus	351		93.62
KOG2314|consensus	698		93.48
KOG3152|consensus	278		93.17
KOG1855|consensus	484		93.08
PF05172	100	Nup35_RRM: Nup53/35/40-type RNA recognition motif;	92.85
PF08952	146	DUF1866: Domain of unknown function (DUF1866) ; In	92.77
KOG2202|consensus	260		91.4
KOG2202|consensus	260		91.02
PF10309	62	DUF2414: Protein of unknown function (DUF2414); In	90.8
KOG4660|consensus	549		90.74
KOG0112|consensus	975		90.59
KOG4849|consensus	498		90.49
COG5175	480	MOT2 Transcriptional repressor [Transcription]	90.26
PF08952	146	DUF1866: Domain of unknown function (DUF1866) ; In	90.08
PF08777	105	RRM_3: RNA binding motif; InterPro: IPR014886 This	90.07
PF14605	53	Nup35_RRM_2: Nup53/35/40-type RNA recognition moti	89.71
KOG4676|consensus	479		88.79
KOG4676|consensus	479		88.19
KOG4285|consensus	350		87.59
KOG1996|consensus	378		86.82
KOG0151|consensus	877		86.5
KOG1996|consensus	378		86.23
KOG2193|consensus	584		84.84
PF08675	87	RNA_bind: RNA binding domain; InterPro: IPR014789	84.65
PF07292	88	NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909	84.55
KOG4285|consensus	350		83.23
KOG2591|consensus	684		81.28

>KOG1365|consensus

Probab=100.00  E-value=5e-36  Score=310.13  Aligned_cols=173  Identities=36%  Similarity=0.495  Sum_probs=134.0

Q ss_pred             Ccc---ccc-hhhcHHHHHHHhhhhhcCcccceEEEEEccCCCCcccceEEecCHHHHHHHHHHHhhccccccCcceEEE
Q psy16116         52 EPI---QGF-KKVLVEHILEFLGEFASNIVYQGVHMVYNSQGQPSGEAFIQMDSEHSAYLAAQLRHNRNMIFGKKQRYIE  127 (612)
Q Consensus        52 ~~~---~~~-~~~~~~~il~f~~~~~~~~~~~gvhmv~n~qg~~sg~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ry~~  127 (612)
                      ++|   +|| ++|+|||||+|||||+.+|++||||||||.||||||||||||+|+++|..||++|||++|    |.||||
T Consensus       280 kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~m----k~RYiE  355 (508)
T KOG1365|consen  280 KDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLM----KSRYIE  355 (508)
T ss_pred             CCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhc----ccceEE
Confidence            666   888 599999999999999999999999999999999999999999999999999999999999    999999


Q ss_pred             EeecCccccceeecCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCccCCCCCCCCCChhhhhHHHHHHHHHHHHHHH
Q psy16116        128 VFQCSGEDMNLVLNGVLPPTSPAISPVGKTLLSPGMLPHSSQPLYPQHNTQINPGLSHLDPLVNVHLTQALAQAQYAKSQ  207 (612)
Q Consensus       128 ~f~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~m~p~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (612)
                      ||+||+||||.||+|+.-.++ ..+|      +||-||+-...    +++..+|. --|                     
T Consensus       356 vfp~S~eeln~vL~~g~~g~~-~q~P------PP~plp~~g~t----p~qAtpP~-~~w---------------------  402 (508)
T KOG1365|consen  356 VFPCSVEELNEVLSGGLVGQQ-HQVP------PPAPLPFMGQT----PPQATPPQ-QFW---------------------  402 (508)
T ss_pred             EeeccHHHHHHHHhcCccccc-CCCC------CCCCccccCcC----CCCCCCcc-ccc---------------------
Confidence            999999999999999875555 4444      45666654311    11111111 001                     


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy16116        208 QDNLMLMNQIAAQQMAALNKPHNMALNGHTPTLIPAPSPNALMPPPLNSKSTTIPTNLPALPAVPTSGGYFPQFQL  283 (612)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~p~~~~~~~~~~~~~~~p~~p~~~~~~p~~~~  283 (612)
                                       .+.+++     -+|...-++.|.+++|-+..+..+..+.+-+.|+..++..++-+.+++
T Consensus       403 -----------------~YPSpp-----isP~vPga~tp~a~Yp~~~~~~~p~~~an~~~P~~s~~~V~f~~~Pt~  456 (508)
T KOG1365|consen  403 -----------------SYPSPP-----ISPIVPGAVTPLAIYPIHMSIGVPELVANFTTPEHSVDNVLFTRWPTH  456 (508)
T ss_pred             -----------------cCCCCC-----CCCCCCCCcCceeeeccccccCccccccCCCCCCCccceeeeecCccc
Confidence                             122222     233334677788899999998888888888888887777777665444

>KOG4211|consensus

Probab=100.00  E-value=7.7e-34  Score=302.56  Aligned_cols=263  Identities=30%  Similarity=0.474  Sum_probs=212.0

Q ss_pred             cccch-hhcHHHHHHHhhhhhcCcccceEEEEEccC-CCCcccceEEecCHHHHHHHHHHHhhccccccCcceEEEEeec
Q psy16116         54 IQGFK-KVLVEHILEFLGEFASNIVYQGVHMVYNSQ-GQPSGEAFIQMDSEHSAYLAAQLRHNRNMIFGKKQRYIEVFQC  131 (612)
Q Consensus        54 ~~~~~-~~~~~~il~f~~~~~~~~~~~gvhmv~n~q-g~~sg~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ry~~~f~~  131 (612)
                      ||||. +|+.+|||+||++|+.+-      ++|+.. |||||||||.|.|++.+..|. ++|+..|    ++||||||.-
T Consensus        15 ~rGLPwsat~~ei~~Ff~~~~I~~------~~~~r~~Gr~sGeA~Ve~~seedv~~Al-kkdR~~m----g~RYIEVf~~   83 (510)
T KOG4211|consen   15 LRGLPWSATEKEILDFFSNCGIEN------LEIPRRNGRPSGEAYVEFTSEEDVEKAL-KKDRESM----GHRYIEVFTA   83 (510)
T ss_pred             ecCCCccccHHHHHHHHhcCceeE------EEEeccCCCcCcceEEEeechHHHHHHH-HhhHHHh----CCceEEEEcc
Confidence            89997 999999999999998876      899998 999999999999999999985 9999999    9999999999


Q ss_pred             CccccceeecCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCccCCCCCCCCCChhhhhHHHHHHHHHHHHHHHHHHH
Q psy16116        132 SGEDMNLVLNGVLPPTSPAISPVGKTLLSPGMLPHSSQPLYPQHNTQINPGLSHLDPLVNVHLTQALAQAQYAKSQQDNL  211 (612)
Q Consensus       132 ~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~m~p~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (612)
                      .++||.|++....| .+                                                               
T Consensus        84 ~~~e~d~~~~~~g~-~s---------------------------------------------------------------   99 (510)
T KOG4211|consen   84 GGAEADWVMRPGGP-NS---------------------------------------------------------------   99 (510)
T ss_pred             CCccccccccCCCC-CC---------------------------------------------------------------
Confidence            99999998763211 00                                                               


Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCccc
Q psy16116        212 MLMNQIAAQQMAALNKPHNMALNGHTPTLIPAPSPNALMPPPLNSKSTTIPTNLPALPAVPTSGGYFPQFQLPINMNTAH  291 (612)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~p~~~~~~~~~~~~~~~p~~p~~~~~~p~~~~~~~~~~~~  291 (612)
                                                                                     .    .           
T Consensus       100 ---------------------------------------------------------------~----~-----------  101 (510)
T KOG4211|consen  100 ---------------------------------------------------------------S----A-----------  101 (510)
T ss_pred             ---------------------------------------------------------------C----C-----------
Confidence                                                                           0    0           


Q ss_pred             ccCCCCCCccccCCCCCCCCCCCCCCCcccCCCCCcEeecCCCCCCCcccceecCCCHHHHHhhHhhcccc--cCeeeEE
Q psy16116        292 LLQPMNTPFFFNMPRMPVTPQVLPKFPVHQLNQTPTVYTIPTPGNPVALCPLVQNIWLSLLLNTIPGYEQV--LGLGGVA  369 (612)
Q Consensus       292 ~~~~~~~p~~~~~P~~p~~~~~~pk~~~~~~~~~~tvfV~~l~~~~~~l~vlV~nLp~~~~e~~fkeff~~--~~v~~V~  369 (612)
                                               .       .   +|.|           +++|||.+++++|.+||..  +..+.|.
T Consensus       102 -------------------------~-------d---~vVR-----------LRGLPfscte~dI~~FFaGL~Iv~~gi~  135 (510)
T KOG4211|consen  102 -------------------------N-------D---GVVR-----------LRGLPFSCTEEDIVEFFAGLEIVPDGIL  135 (510)
T ss_pred             -------------------------C-------C---ceEE-----------ecCCCccCcHHHHHHHhcCCccccccee
Confidence                                     0       0   1112           5666666666666666665  3455688


Q ss_pred             EeeCCCCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccCccchhhccCCC---------------Cc-------
Q psy16116        370 LCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGEDFINVAGGN---------------NN-------  427 (612)
Q Consensus       370 ii~d~~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~~~e~~~~~g~~---------------~~-------  427 (612)
                      ++++..||+.|.|||.|+|.|.|++||.+|++.|+.|+|+|++++.+++.+..+..               ..       
T Consensus       136 l~~d~rgR~tGEAfVqF~sqe~ae~Al~rhre~iGhRYIEvF~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~  215 (510)
T KOG4211|consen  136 LPMDQRGRPTGEAFVQFESQESAEIALGRHRENIGHRYIEVFRSSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQ  215 (510)
T ss_pred             eeccCCCCcccceEEEecCHHHHHHHHHHHHHhhccceEEeehhHHHHHHhhccccccccCCCCccccccCCcccccccc
Confidence            89999999999999999999999999999999999999999999877654322000               00       


Q ss_pred             ---------c-----------------------------h--hhhcc---------------CCcccEEEEeCCCCCCCH
Q psy16116        428 ---------E-----------------------------A--QAFLT---------------RGAQVIIRMRGLPYECTA  452 (612)
Q Consensus       428 ---------e-----------------------------~--~~~~~---------------~~~~~~VfV~nLP~s~te  452 (612)
                               .                             +  .....               .....++++|+|||.+++
T Consensus       216 ~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~  295 (510)
T KOG4211|consen  216 GRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGRDPNYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATE  295 (510)
T ss_pred             ccCCCccccccccccCCccccccCccccccccccccccccccccCCCCCcccCCCcccccCCCCCCceeeecCCCccCCC
Confidence                     0                             0  00000               012388999999999999


Q ss_pred             HHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCcccCCEEEEEEecchH
Q psy16116        453 KQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALSKHKESIGIRYIELFRSTTA  524 (612)
Q Consensus       453 ~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~~~~~~iggR~IeV~~as~~  524 (612)
                      .||.+||+.+.         .-+|+|-..++||.+|.|+|+|.+.|||..|+.+++..|++|+|+.+.....
T Consensus       296 ~di~nfFspl~---------p~~v~i~ig~dGr~TGEAdveF~t~edav~Amskd~anm~hrYVElFln~~~  358 (510)
T KOG4211|consen  296 NDIANFFSPLN---------PYRVHIEIGPDGRATGEADVEFATGEDAVGAMGKDGANMGHRYVELFLNGAP  358 (510)
T ss_pred             cchhhhcCCCC---------ceeEEEEeCCCCccCCcceeecccchhhHhhhccCCcccCcceeeecccCCc
Confidence            99999999875         2368898899999999999999999999999999999999999999987543

>KOG4211|consensus

Probab=100.00  E-value=2.4e-32  Score=291.16  Aligned_cols=263  Identities=29%  Similarity=0.463  Sum_probs=185.8

Q ss_pred             CCCCcEeecCCCCCCCcccceecCCCHHHHHhhHhhcccccCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHHhCCCc
Q psy16116        323 NQTPTVYTIPTPGNPVALCPLVQNIWLSLLLNTIPGYEQVLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHH  402 (612)
Q Consensus       323 ~~~~tvfV~~l~~~~~~l~vlV~nLp~~~~e~~fkeff~~~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~~ng~~  402 (612)
                      ++..+.|++++.++||+       .+.+++.+||.+|.    |.++.+.+ .+||.+|.|||+|+++||+++||++++..
T Consensus         5 ~e~~~~~~vr~rGLPws-------at~~ei~~Ff~~~~----I~~~~~~r-~~Gr~sGeA~Ve~~seedv~~AlkkdR~~   72 (510)
T KOG4211|consen    5 NEGSTAFEVRLRGLPWS-------ATEKEILDFFSNCG----IENLEIPR-RNGRPSGEAYVEFTSEEDVEKALKKDRES   72 (510)
T ss_pred             cCCCcceEEEecCCCcc-------ccHHHHHHHHhcCc----eeEEEEec-cCCCcCcceEEEeechHHHHHHHHhhHHH
Confidence            45667777775555544       33366666666655    55644433 36999999999999999999999999999


Q ss_pred             cCceEEEEeccCccchhhccCCCCcchhhhccCCcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC
Q psy16116        403 IDKRYIEVTKANGEDFINVAGGNNNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP  482 (612)
Q Consensus       403 IggR~IeV~~s~~~e~~~~~g~~~~e~~~~~~~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~  482 (612)
                      |++|+|+|+.+..+++.+.+.......     .....+|++|||||+||++||.+||+.+.     |+  .+.|.+++|.
T Consensus        73 mg~RYIEVf~~~~~e~d~~~~~~g~~s-----~~~d~vVRLRGLPfscte~dI~~FFaGL~-----Iv--~~gi~l~~d~  140 (510)
T KOG4211|consen   73 MGHRYIEVFTAGGAEADWVMRPGGPNS-----SANDGVVRLRGLPFSCTEEDIVEFFAGLE-----IV--PDGILLPMDQ  140 (510)
T ss_pred             hCCceEEEEccCCccccccccCCCCCC-----CCCCceEEecCCCccCcHHHHHHHhcCCc-----cc--ccceeeeccC
Confidence            999999999998877655433222111     13457899999999999999999999886     43  3478899999


Q ss_pred             CCCceeEEEEEeCCHHHHHHHHHhCCcccCCEEEEEEecchHHHHHHhhhh---cCCCCCCCCCCCCCCC-------C--
Q psy16116        483 DGKATGDAFVLFEKEEEADKALSKHKESIGIRYIELFRSTTAEVQQVLNKT---MELPKNNSLTSSNNGL-------S--  550 (612)
Q Consensus       483 ~GrskG~AFV~F~s~edA~kAL~~~~~~iggR~IeV~~as~~e~~~~~~~~---~~~~~~~~~~~e~~~~-------s--  550 (612)
                      .||++|.|||.|++.|.|++||.+|++.|++|+|||++++..|+..+...-   ..++.+++++...++.       .  
T Consensus       141 rgR~tGEAfVqF~sqe~ae~Al~rhre~iGhRYIEvF~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~  220 (510)
T KOG4211|consen  141 RGRPTGEAFVQFESQESAEIALGRHRENIGHRYIEVFRSSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPG  220 (510)
T ss_pred             CCCcccceEEEecCHHHHHHHHHHHHHhhccceEEeehhHHHHHHhhccccccccCCCCccccccCCccccccccccCCC
Confidence            999999999999999999999999999999999999999999998876321   1123333332111110       0  


Q ss_pred             --C------cccc-------------------cccccCCCC----CCCCccccc-C-CCcccEEEEcCCCccCCHHHHHH
Q psy16116        551 --A------QQPM-------------------LSHLAQVPV----PYLPQHIIT-S-GTRKDCIRLRGLPYEALCILMDI  597 (612)
Q Consensus       551 --~------~~~~-------------------~~~~s~~p~----~~~~~~~~~-~-~~~~~~VfVrNLPf~vTeeDLke  597 (612)
                        .      .+.+                   ..+.-..+.    ......... . .....++++|+|||++++.||.+
T Consensus       221 ~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~n  300 (510)
T KOG4211|consen  221 RNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGRDPNYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIAN  300 (510)
T ss_pred             ccccccccccCCccccccCccccccccccccccccccccCCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhh
Confidence              0      0000                   000000000    011111111 1 22338999999999999999999


Q ss_pred             hhccCCcEeEee
Q psy16116        598 FFVGQQDSFVHK  609 (612)
Q Consensus       598 fFs~~gdI~~~k  609 (612)
                      ||+.+..+.++.
T Consensus       301 fFspl~p~~v~i  312 (510)
T KOG4211|consen  301 FFSPLNPYRVHI  312 (510)
T ss_pred             hcCCCCceeEEE
Confidence            999998887765

>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor

Probab=99.96  E-value=7.5e-29  Score=261.63  Aligned_cols=158  Identities=16%  Similarity=0.179  Sum_probs=129.3

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCccc
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGED  417 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~e  417 (612)
                      +++|+|||++.++++|+++|.. +.+.+|+|++++ +|+++|||||+|.+.+||++||+ +++..|+|+.|.|..+....
T Consensus         5 ~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~~~   84 (352)
T TIGR01661         5 NLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARPSS   84 (352)
T ss_pred             EEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeecccc
Confidence            4556777776666666666654 458999999986 58999999999999999999996 89999999999997654321


Q ss_pred             hhhccCCCCcchhhhccCCcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCC
Q psy16116        418 FINVAGGNNNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEK  496 (612)
Q Consensus       418 ~~~~~g~~~~e~~~~~~~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s  496 (612)
                      -                .....+|||+|||+++++++|+++|+.||        .+..++++.+. +|.++|||||+|.+
T Consensus        85 ~----------------~~~~~~l~v~~l~~~~~~~~l~~~f~~~G--------~i~~~~~~~~~~~~~~~g~~fv~f~~  140 (352)
T TIGR01661        85 D----------------SIKGANLYVSGLPKTMTQHELESIFSPFG--------QIITSRILSDNVTGLSKGVGFIRFDK  140 (352)
T ss_pred             c----------------ccccceEEECCccccCCHHHHHHHHhccC--------CEEEEEEEecCCCCCcCcEEEEEECC
Confidence            0                01234699999999999999999999999        44568888776 78999999999999


Q ss_pred             HHHHHHHHH-hCCcccCC--EEEEEEecc
Q psy16116        497 EEEADKALS-KHKESIGI--RYIELFRST  522 (612)
Q Consensus       497 ~edA~kAL~-~~~~~igg--R~IeV~~as  522 (612)
                      .++|++||+ +|+..+.|  +.|.|..+.
T Consensus       141 ~~~A~~ai~~l~g~~~~g~~~~i~v~~a~  169 (352)
T TIGR01661       141 RDEADRAIKTLNGTTPSGCTEPITVKFAN  169 (352)
T ss_pred             HHHHHHHHHHhCCCccCCCceeEEEEECC
Confidence            999999996 79988877  668888774

These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).

>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family

Probab=99.96  E-value=1.5e-27  Score=268.20  Aligned_cols=209  Identities=16%  Similarity=0.194  Sum_probs=159.7

Q ss_pred             HHHHhhHhhcccccCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCccchhhccCCCCcc
Q psy16116        350 SLLLNTIPGYEQVLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGEDFINVAGGNNNE  428 (612)
Q Consensus       350 ~~~e~~fkeff~~~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~e~~~~~g~~~~e  428 (612)
                      ++++++|+.|+   .+.+|+++.+.+|+++|||||+|++.|+|++|++ +++..++++.|.|..........   ..   
T Consensus       103 ~~L~~~F~~~G---~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~~~~~~~---~~---  173 (562)
T TIGR01628       103 KALFDTFSKFG---NILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFIKKHERE---AA---  173 (562)
T ss_pred             HHHHHHHHhcC---CcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEEeccccccccc---cc---
Confidence            55666666555   4778999999999999999999999999999996 78999999999885443221110   00   


Q ss_pred             hhhhccCCcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hC
Q psy16116        429 AQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KH  507 (612)
Q Consensus       429 ~~~~~~~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~  507 (612)
                           ......+|||+|||+++|+++|+++|+.||        .+.++.++.+.+|+++|||||+|.+.++|.+|++ ++
T Consensus       174 -----~~~~~~~l~V~nl~~~~tee~L~~~F~~fG--------~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~  240 (562)
T TIGR01628       174 -----PLKKFTNLYVKNLDPSVNEDKLRELFAKFG--------EITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMN  240 (562)
T ss_pred             -----cccCCCeEEEeCCCCcCCHHHHHHHHHhcC--------CEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhC
Confidence                 011235699999999999999999999999        4567999999999999999999999999999996 79


Q ss_pred             CcccC----CEEEEEEecchHHHHH-HhhhhcCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCcccccCCCcccEEE
Q psy16116        508 KESIG----IRYIELFRSTTAEVQQ-VLNKTMELPKNNSLTSSNNGLSAQQPMLSHLAQVPVPYLPQHIITSGTRKDCIR  582 (612)
Q Consensus       508 ~~~ig----gR~IeV~~as~~e~~~-~~~~~~~~~~~~~~~~e~~~~s~~~~~~~~~s~~p~~~~~~~~~~~~~~~~~Vf  582 (612)
                      +..++    |+.+.|..+..+.... ...+... .    ...                        +.  .......+||
T Consensus       241 g~~i~~~~~g~~l~v~~a~~k~er~~~~~~~~~-~----~~~------------------------~~--~~~~~~~~l~  289 (562)
T TIGR01628       241 GKKIGLAKEGKKLYVGRAQKRAEREAELRRKFE-E----LQQ------------------------ER--KMKAQGVNLY  289 (562)
T ss_pred             CcEecccccceeeEeecccChhhhHHHHHhhHH-h----hhh------------------------hh--hcccCCCEEE
Confidence            99999    9999998875443221 1111100 0    000                        00  0012456899


Q ss_pred             EcCCCccCCHHHHHHhhccCCcEeEeeCC
Q psy16116        583 LRGLPYEALCILMDIFFVGQQDSFVHKVP  611 (612)
Q Consensus       583 VrNLPf~vTeeDLkefFs~~gdI~~~kip  611 (612)
                      |+|||+++|+++|+++|+.||.|..++|.
T Consensus       290 V~nl~~~~~~~~L~~~F~~~G~i~~~~i~  318 (562)
T TIGR01628       290 VKNLDDTVTDEKLRELFSECGEITSAKVM  318 (562)
T ss_pred             EeCCCCccCHHHHHHHHHhcCCeEEEEEE
Confidence            99999999999999999999999888764

There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.

>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family

Probab=99.96  E-value=2.7e-28  Score=274.12  Aligned_cols=206  Identities=16%  Similarity=0.113  Sum_probs=164.0

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCC-CCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCccc
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAF-GRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGED  417 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~-GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~e  417 (612)
                      +++|+||+.+.+|++|+++|.. +.+.+|+|++|.. |+++|||||+|.+.+||++||+ +++..|+|+.|+|.++.++.
T Consensus         2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~   81 (562)
T TIGR01628         2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP   81 (562)
T ss_pred             eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence            3567777777766666666654 4589999999875 8999999999999999999996 67788999999998775432


Q ss_pred             hhhccCCCCcchhhhccCCcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCH
Q psy16116        418 FINVAGGNNNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKE  497 (612)
Q Consensus       418 ~~~~~g~~~~e~~~~~~~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~  497 (612)
                      ..+              +....+|||+|||+++++++|+++|+.||        .+.+|+|+.|.+|+++|||||+|.+.
T Consensus        82 ~~~--------------~~~~~~vfV~nLp~~~~~~~L~~~F~~~G--------~i~~~~i~~~~~g~skg~afV~F~~~  139 (562)
T TIGR01628        82 SLR--------------RSGVGNIFVKNLDKSVDNKALFDTFSKFG--------NILSCKVATDENGKSRGYGFVHFEKE  139 (562)
T ss_pred             ccc--------------ccCCCceEEcCCCccCCHHHHHHHHHhcC--------CcceeEeeecCCCCcccEEEEEECCH
Confidence            111              11234699999999999999999999999        34569999999999999999999999


Q ss_pred             HHHHHHHH-hCCcccCCEEEEEEecchHHHHHHhhhhcCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCcccccCCC
Q psy16116        498 EEADKALS-KHKESIGIRYIELFRSTTAEVQQVLNKTMELPKNNSLTSSNNGLSAQQPMLSHLAQVPVPYLPQHIITSGT  576 (612)
Q Consensus       498 edA~kAL~-~~~~~iggR~IeV~~as~~e~~~~~~~~~~~~~~~~~~~e~~~~s~~~~~~~~~s~~p~~~~~~~~~~~~~  576 (612)
                      ++|++|++ +|+..++++.|.|.....+.        .       +..                            ....
T Consensus       140 e~A~~Ai~~lng~~~~~~~i~v~~~~~~~--------~-------~~~----------------------------~~~~  176 (562)
T TIGR01628       140 ESAKAAIQKVNGMLLNDKEVYVGRFIKKH--------E-------REA----------------------------APLK  176 (562)
T ss_pred             HHHHHHHHHhcccEecCceEEEecccccc--------c-------ccc----------------------------cccc
Confidence            99999996 69999999999885432110        0       000                            0012


Q ss_pred             cccEEEEcCCCccCCHHHHHHhhccCCcEeEeeCC
Q psy16116        577 RKDCIRLRGLPYEALCILMDIFFVGQQDSFVHKVP  611 (612)
Q Consensus       577 ~~~~VfVrNLPf~vTeeDLkefFs~~gdI~~~kip  611 (612)
                      ..++|||+|||+++|+++|+++|+.||.|..+++.
T Consensus       177 ~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~  211 (562)
T TIGR01628       177 KFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVM  211 (562)
T ss_pred             CCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEE
Confidence            34689999999999999999999999998877664

There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.

>KOG1365|consensus

Probab=99.95  E-value=3.1e-28  Score=252.51  Aligned_cols=237  Identities=54%  Similarity=0.859  Sum_probs=189.5

Q ss_pred             CHHHHHhhHhhcccccCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccCccchhhccCCCCc
Q psy16116        348 WLSLLLNTIPGYEQVLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGEDFINVAGGNNN  427 (612)
Q Consensus       348 p~~~~e~~fkeff~~~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~~~e~~~~~g~~~~  427 (612)
                      +..++..||+....  ....+.+..+..||+.|+|.|.|.|.|.-+.||+++++.+++|+|+|++++.+++....++.+.
T Consensus        73 Sd~~ia~ff~gl~i--a~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkRhkhh~g~ryievYka~ge~f~~iagg~s~  150 (508)
T KOG1365|consen   73 SDQDIARFFKGLNI--ANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKRHKHHMGTRYIEVYKATGEEFLKIAGGTSN  150 (508)
T ss_pred             ccCCHHHHHhhhhc--cccceeeeehhhhccccceEEEecCchhhhhhhHhhhhhccCCceeeeccCchhheEecCCccc
Confidence            33456666665543  3446777788899999999999999999999999999999999999999999999888888877


Q ss_pred             chhhhccCCcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhC
Q psy16116        428 EAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALSKH  507 (612)
Q Consensus       428 e~~~~~~~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~~~  507 (612)
                      +...|.+++....|++|||||++++.|+.+||..    +|.|.+..++|.++...+||.+|.|||.|+.+++|+.||.+|
T Consensus       151 e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~----~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~kh  226 (508)
T KOG1365|consen  151 EAAPFLSKENQVIVRMRGLPFDATALDVVEFFGP----PCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRKH  226 (508)
T ss_pred             cCCCCCCcccceEEEecCCCCCcchHHHHHhcCC----CCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHHH
Confidence            7777877778889999999999999999999973    445555678899999999999999999999999999999999


Q ss_pred             CcccCCEEEEEEecchHHHHHHhhhhcCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCcccccCCCcccEEEEcCCC
Q psy16116        508 KESIGIRYIELFRSTTAEVQQVLNKTMELPKNNSLTSSNNGLSAQQPMLSHLAQVPVPYLPQHIITSGTRKDCIRLRGLP  587 (612)
Q Consensus       508 ~~~iggR~IeV~~as~~e~~~~~~~~~~~~~~~~~~~e~~~~s~~~~~~~~~s~~p~~~~~~~~~~~~~~~~~VfVrNLP  587 (612)
                      ++.||.||||+++++..|+.+.+++....+-.....+.      ..+      ..|....+.     ...+.||.+||||
T Consensus       227 rq~iGqRYIElFRSTaaEvqqvlnr~~s~pLi~~~~sp------~~p------~~p~~~~p~-----~~~kdcvRLRGLP  289 (508)
T KOG1365|consen  227 RQNIGQRYIELFRSTAAEVQQVLNREVSEPLIPGLTSP------LLP------GGPARLVPP-----TRSKDCVRLRGLP  289 (508)
T ss_pred             HHHHhHHHHHHHHHhHHHHHHHHHhhccccccCCCCCC------CCC------CCccccCCC-----CCCCCeeEecCCC
Confidence            99999999999999999999999876522211110000      000      001101111     1247899999999


Q ss_pred             ccCCHHHHHHhhccC-CcEeE
Q psy16116        588 YEALCILMDIFFVGQ-QDSFV  607 (612)
Q Consensus       588 f~vTeeDLkefFs~~-gdI~~  607 (612)
                      |++|.|||-.||.+| .+|..
T Consensus       290 y~AtvEdIL~FlgdFa~~i~f  310 (508)
T KOG1365|consen  290 YEATVEDILDFLGDFATDIRF  310 (508)
T ss_pred             hhhhHHHHHHHHHHHhhhccc
Confidence            999999999999998 45544

>KOG0127|consensus

Probab=99.94  E-value=1.8e-26  Score=247.97  Aligned_cols=177  Identities=21%  Similarity=0.263  Sum_probs=133.4

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCC-CCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCccc
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAF-GRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGED  417 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~-GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~e  417 (612)
                      ++||++||++.+.+.+.+||.. +++....++.++. +.+||||||+|+-.||++.||+ ..+..++||.|.|..+..+.
T Consensus         7 TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R~   86 (678)
T KOG0127|consen    7 TLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKRA   86 (678)
T ss_pred             eEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccccccc
Confidence            4556666766666666655553 4577777777764 5889999999999999999997 67788999999997765532


Q ss_pred             hhh-ccCCCC--cch---h-hhc-c--CCcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCce
Q psy16116        418 FIN-VAGGNN--NEA---Q-AFL-T--RGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKAT  487 (612)
Q Consensus       418 ~~~-~~g~~~--~e~---~-~~~-~--~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~Grsk  487 (612)
                      ..+ ...+..  .+.   + ... .  ....-.|.||||||+|.+.||+.+|+.||    .|    ..|.|+...+|+-.
T Consensus        87 r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G----~V----~Ei~IP~k~dgklc  158 (678)
T KOG0127|consen   87 RSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFG----KV----VEIVIPRKKDGKLC  158 (678)
T ss_pred             cchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcc----eE----EEEEcccCCCCCcc
Confidence            211 110000  000   0 000 0  12356799999999999999999999999    44    45999988899988


Q ss_pred             eEEEEEeCCHHHHHHHHH-hCCcccCCEEEEEEecchHH
Q psy16116        488 GDAFVLFEKEEEADKALS-KHKESIGIRYIELFRSTTAE  525 (612)
Q Consensus       488 G~AFV~F~s~edA~kAL~-~~~~~iggR~IeV~~as~~e  525 (612)
                      |||||.|....+|.+||+ +|+..|+||.|-|.++-.++
T Consensus       159 GFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd  197 (678)
T KOG0127|consen  159 GFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKD  197 (678)
T ss_pred             ceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecccc
Confidence            999999999999999997 69999999999999985544

>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family

Probab=99.94  E-value=6.4e-26  Score=253.82  Aligned_cols=199  Identities=18%  Similarity=0.144  Sum_probs=147.6

Q ss_pred             ceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccC-ceEEEEeccCccch
Q psy16116        342 PLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHID-KRYIEVTKANGEDF  418 (612)
Q Consensus       342 vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~Ig-gR~IeV~~s~~~e~  418 (612)
                      +||+|||.+..+++|+++|.. +.+.+|+|++|.+|+++|||||+|.+.|+|++||+ +|+..|. ++.|.|..+.    
T Consensus        61 lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~----  136 (578)
T TIGR01648        61 VFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISV----  136 (578)
T ss_pred             EEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccccc----
Confidence            345555555555555555443 45889999999899999999999999999999997 6777664 6766664332    


Q ss_pred             hhccCCCCcchhhhccCCcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEe-eC-CCCCceeEEEEEeCC
Q psy16116        419 INVAGGNNNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFV-KK-PDGKATGDAFVLFEK  496 (612)
Q Consensus       419 ~~~~g~~~~e~~~~~~~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~-~d-~~GrskG~AFV~F~s  496 (612)
                                        ..++|||+|||+++++++|.+.|++++.       .+..+.+. .. ..++++|||||+|++
T Consensus       137 ------------------~~~rLFVgNLP~~~TeeeL~eeFskv~e-------gvv~vIv~~~~~~kgKnRGFAFVeF~s  191 (578)
T TIGR01648       137 ------------------DNCRLFVGGIPKNKKREEILEEFSKVTE-------GVVDVIVYHSAADKKKNRGFAFVEYES  191 (578)
T ss_pred             ------------------cCceeEeecCCcchhhHHHHHHhhcccC-------CceEEEEeccccccCccCceEEEEcCC
Confidence                              1246999999999999999999999861       11223332 22 357899999999999


Q ss_pred             HHHHHHHHH-hC--CcccCCEEEEEEecchHHHHHHhhhhcCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCccccc
Q psy16116        497 EEEADKALS-KH--KESIGIRYIELFRSTTAEVQQVLNKTMELPKNNSLTSSNNGLSAQQPMLSHLAQVPVPYLPQHIIT  573 (612)
Q Consensus       497 ~edA~kAL~-~~--~~~iggR~IeV~~as~~e~~~~~~~~~~~~~~~~~~~e~~~~s~~~~~~~~~s~~p~~~~~~~~~~  573 (612)
                      +++|.+|++ ++  +..+.||.|.|..+..++-          ..     .+                            
T Consensus       192 ~edAa~AirkL~~gki~l~Gr~I~VdwA~p~~~----------~d-----~~----------------------------  228 (578)
T TIGR01648       192 HRAAAMARRKLMPGRIQLWGHVIAVDWAEPEEE----------VD-----ED----------------------------  228 (578)
T ss_pred             HHHHHHHHHHhhccceEecCceEEEEeeccccc----------cc-----cc----------------------------
Confidence            999999996 33  3468899999987653210          00     00                            


Q ss_pred             CCCcccEEEEcCCCccCCHHHHHHhhccC--CcEeEeeCCC
Q psy16116        574 SGTRKDCIRLRGLPYEALCILMDIFFVGQ--QDSFVHKVPK  612 (612)
Q Consensus       574 ~~~~~~~VfVrNLPf~vTeeDLkefFs~~--gdI~~~kip~  612 (612)
                      ......+|||+|||+++|+|+|+++|+.|  ++|.-+++.|
T Consensus       229 ~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r  269 (578)
T TIGR01648       229 VMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR  269 (578)
T ss_pred             ccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec
Confidence            00123589999999999999999999999  9998887653

Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.

>TIGR01622 SF-CC1 splicing factor, CC1-like family

Probab=99.92  E-value=4.3e-24  Score=233.66  Aligned_cols=170  Identities=20%  Similarity=0.181  Sum_probs=134.2

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccCccch
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGEDF  418 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~~~e~  418 (612)
                      +|+|+||+++.++++|+++|.. +.+.+|+|++++ +|+++|||||+|.+.++|++||.+++..+.|+.|.|..+..+..
T Consensus        91 ~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~~~~~~~~  170 (457)
T TIGR01622        91 TVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQSSQAEKN  170 (457)
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEeecchhhh
Confidence            4556666666666666665554 458999999986 48999999999999999999999999999999999976543321


Q ss_pred             hhccCCCCcchhhhccCCcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCH
Q psy16116        419 INVAGGNNNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKE  497 (612)
Q Consensus       419 ~~~~g~~~~e~~~~~~~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~  497 (612)
                      ...........    ......+|||+|||+++++++|+++|+.||        .+..|.|+.+. +|+++|||||+|.+.
T Consensus       171 ~~~~~~~~~~~----~~p~~~~l~v~nl~~~~te~~l~~~f~~~G--------~i~~v~~~~d~~~g~~~g~afV~f~~~  238 (457)
T TIGR01622       171 RAAKAATHQPG----DIPNFLKLYVGNLHFNITEQELRQIFEPFG--------DIEDVQLHRDPETGRSKGFGFIQFHDA  238 (457)
T ss_pred             hhhhcccccCC----CCCCCCEEEEcCCCCCCCHHHHHHHHHhcC--------CeEEEEEEEcCCCCccceEEEEEECCH
Confidence            11100000000    011257899999999999999999999999        45679999887 579999999999999


Q ss_pred             HHHHHHHH-hCCcccCCEEEEEEecc
Q psy16116        498 EEADKALS-KHKESIGIRYIELFRST  522 (612)
Q Consensus       498 edA~kAL~-~~~~~iggR~IeV~~as  522 (612)
                      ++|.+||+ +++..|+||.|.|..+.
T Consensus       239 e~A~~A~~~l~g~~i~g~~i~v~~a~  264 (457)
T TIGR01622       239 EEAKEALEVMNGFELAGRPIKVGYAQ  264 (457)
T ss_pred             HHHHHHHHhcCCcEECCEEEEEEEcc
Confidence            99999996 79999999999999964

A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.

>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor

Probab=99.91  E-value=1.6e-23  Score=231.88  Aligned_cols=246  Identities=15%  Similarity=0.182  Sum_probs=158.0

Q ss_pred             CCCCcEeecCCCCCCCcccceecCCCHHHHHhhHhhccccc---------CeeeEEEeeCCCCCCcceEEEEeCCHHHHH
Q psy16116        323 NQTPTVYTIPTPGNPVALCPLVQNIWLSLLLNTIPGYEQVL---------GLGGVALCLSAFGRRNGEAIVRFIDQEHRD  393 (612)
Q Consensus       323 ~~~~tvfV~~l~~~~~~l~vlV~nLp~~~~e~~fkeff~~~---------~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~  393 (612)
                      .+..+|||++|+..          ++.+++.++|.+|+...         .+.++.     .++.+|||||+|.+.|+|.
T Consensus       173 ~~~r~lyVgnLp~~----------~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~-----~~~~kg~afVeF~~~e~A~  237 (509)
T TIGR01642       173 RQARRLYVGGIPPE----------FVEEAVVDFFNDLMIATGYHKAEDGKHVSSVN-----INKEKNFAFLEFRTVEEAT  237 (509)
T ss_pred             ccccEEEEeCCCCC----------CCHHHHHHHHHHHHHhcCCCCCCCCCceEEEE-----ECCCCCEEEEEeCCHHHHh
Confidence            44566775554332          23366666666654321         122222     2467899999999999999


Q ss_pred             HHHHhCCCccCceEEEEeccCccchhh-----ccCCCCc-chhhh-------ccCCcccEEEEeCCCCCCCHHHHHHHHh
Q psy16116        394 MALKRHKHHIDKRYIEVTKANGEDFIN-----VAGGNNN-EAQAF-------LTRGAQVIIRMRGLPYECTAKQVIDFFE  460 (612)
Q Consensus       394 kAL~~ng~~IggR~IeV~~s~~~e~~~-----~~g~~~~-e~~~~-------~~~~~~~~VfV~nLP~s~te~dLrefF~  460 (612)
                      +||++++..+.|+.|.|.......-..     ....... .....       .......+|||+|||+.+++++|+++|+
T Consensus       238 ~Al~l~g~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~  317 (509)
T TIGR01642       238 FAMALDSIIYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLE  317 (509)
T ss_pred             hhhcCCCeEeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHH
Confidence            999999999999999996543211000     0000000 00000       0112457899999999999999999999


Q ss_pred             cCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEEEEEEecchHHHHHHhhhhcCCCC
Q psy16116        461 AGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIRYIELFRSTTAEVQQVLNKTMELPK  538 (612)
Q Consensus       461 ~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~IeV~~as~~e~~~~~~~~~~~~~  538 (612)
                      .||        .+..+.|+.+. +|+++|||||+|.+.++|.+||+ +++..|+|+.|.|..+.......    .   . 
T Consensus       318 ~~G--------~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~~~----~---~-  381 (509)
T TIGR01642       318 SFG--------DLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGANQA----T---I-  381 (509)
T ss_pred             hcC--------CeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCCCCC----C---c-
Confidence            999        45678998886 79999999999999999999996 79999999999998875221000    0   0 


Q ss_pred             CCCCCCCCCCCCCcccccccccCCCCCCCCccc-ccCCCcccEEEEcCCCcc----------CCHHHHHHhhccCCcEeE
Q psy16116        539 NNSLTSSNNGLSAQQPMLSHLAQVPVPYLPQHI-ITSGTRKDCIRLRGLPYE----------ALCILMDIFFVGQQDSFV  607 (612)
Q Consensus       539 ~~~~~~e~~~~s~~~~~~~~~s~~p~~~~~~~~-~~~~~~~~~VfVrNLPf~----------vTeeDLkefFs~~gdI~~  607 (612)
                        ...   ++.. ....  .....     .+.. ........+|+|.||.+.          ...+||+++|+.||.|..
T Consensus       382 --~~~---~~~~-~~~~--~~~~~-----~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~  448 (509)
T TIGR01642       382 --DTS---NGMA-PVTL--LAKAL-----SQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLIN  448 (509)
T ss_pred             --ccc---cccc-cccc--ccccc-----hhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeE
Confidence              000   0000 0000  00000     0000 011234578999999742          234789999999999999


Q ss_pred             eeCCC
Q psy16116        608 HKVPK  612 (612)
Q Consensus       608 ~kip~  612 (612)
                      ++||+
T Consensus       449 v~i~~  453 (509)
T TIGR01642       449 IVIPR  453 (509)
T ss_pred             EEeec
Confidence            99874

Members of this subfamily are found in plants, metazoa and fungi.

>TIGR01659 sex-lethal sex-lethal family splicing factor

Probab=99.91  E-value=5.7e-24  Score=226.53  Aligned_cols=163  Identities=17%  Similarity=0.108  Sum_probs=132.5

Q ss_pred             CcccceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccC
Q psy16116        338 VALCPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKAN  414 (612)
Q Consensus       338 ~~l~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~  414 (612)
                      ...+|||+||+.+.++++|+++|.. +.|.+|+|++|+ +|+++|||||+|.++++|++||+ +++..+.++.|+|..+.
T Consensus       106 ~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a~  185 (346)
T TIGR01659       106 SGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYAR  185 (346)
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeeccc
Confidence            3445556677776666666666654 458899998885 68999999999999999999996 89999999999997654


Q ss_pred             ccchhhccCCCCcchhhhccCCcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEE
Q psy16116        415 GEDFINVAGGNNNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVL  493 (612)
Q Consensus       415 ~~e~~~~~g~~~~e~~~~~~~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~  493 (612)
                      ....                .....+|||+|||++++|+||+++|++||        .+..++|+.|. +|+++|||||+
T Consensus       186 p~~~----------------~~~~~~lfV~nLp~~vtee~L~~~F~~fG--------~V~~v~i~~d~~tg~~kG~aFV~  241 (346)
T TIGR01659       186 PGGE----------------SIKDTNLYVTNLPRTITDDQLDTIFGKYG--------QIVQKNILRDKLTGTPRGVAFVR  241 (346)
T ss_pred             cccc----------------ccccceeEEeCCCCcccHHHHHHHHHhcC--------CEEEEEEeecCCCCccceEEEEE
Confidence            3210                01234699999999999999999999999        45678998887 89999999999


Q ss_pred             eCCHHHHHHHHH-hCCcccCC--EEEEEEecchH
Q psy16116        494 FEKEEEADKALS-KHKESIGI--RYIELFRSTTA  524 (612)
Q Consensus       494 F~s~edA~kAL~-~~~~~igg--R~IeV~~as~~  524 (612)
                      |.+.++|++||+ +|+..+.+  +.|.|..+...
T Consensus       242 F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~  275 (346)
T TIGR01659       242 FNKREEAQEAISALNNVIPEGGSQPLTVRLAEEH  275 (346)
T ss_pred             ECCHHHHHHHHHHhCCCccCCCceeEEEEECCcc
Confidence            999999999997 69988765  78999887643

This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).

>KOG0117|consensus

Probab=99.91  E-value=8e-24  Score=223.68  Aligned_cols=200  Identities=19%  Similarity=0.190  Sum_probs=160.7

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccC-ceEEEEeccCcc
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHID-KRYIEVTKANGE  416 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~Ig-gR~IeV~~s~~~  416 (612)
                      -|||+.||.+..|++|..+|+. +.+-+++|++|+ +|.+||||||+|.+.++|++|++ +|++.|. |+.|.|..+.. 
T Consensus        85 EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Sva-  163 (506)
T KOG0117|consen   85 EVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSVA-  163 (506)
T ss_pred             eEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEeee-
Confidence            4568889988889999987765 669999999995 69999999999999999999997 7887775 78888865432 


Q ss_pred             chhhccCCCCcchhhhccCCcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC--CCCceeEEEEEe
Q psy16116        417 DFINVAGGNNNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP--DGKATGDAFVLF  494 (612)
Q Consensus       417 e~~~~~g~~~~e~~~~~~~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~--~GrskG~AFV~F  494 (612)
                                           .++|||+|+|.+.++++|++-|++.+-       ++..|.|..++  ..|+||||||+|
T Consensus       164 ---------------------n~RLFiG~IPK~k~keeIlee~~kVte-------GVvdVivy~~p~dk~KNRGFaFveY  215 (506)
T KOG0117|consen  164 ---------------------NCRLFIGNIPKTKKKEEILEEMKKVTE-------GVVDVIVYPSPDDKTKNRGFAFVEY  215 (506)
T ss_pred             ---------------------cceeEeccCCccccHHHHHHHHHhhCC-------CeeEEEEecCccccccccceEEEEe
Confidence                                 256999999999999999999999872       34457776654  578999999999


Q ss_pred             CCHHHHHHHHHh---CCcccCCEEEEEEecchHHHHHHhhhhcCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCccc
Q psy16116        495 EKEEEADKALSK---HKESIGIRYIELFRSTTAEVQQVLNKTMELPKNNSLTSSNNGLSAQQPMLSHLAQVPVPYLPQHI  571 (612)
Q Consensus       495 ~s~edA~kAL~~---~~~~iggR~IeV~~as~~e~~~~~~~~~~~~~~~~~~~e~~~~s~~~~~~~~~s~~p~~~~~~~~  571 (612)
                      .|+..|..|-++   .+-.+.|..|.|.++.+++-          +       +.+          .+            
T Consensus       216 e~H~~Aa~aRrKl~~g~~klwgn~~tVdWAep~~e----------~-------ded----------~m------------  256 (506)
T KOG0117|consen  216 ESHRAAAMARRKLMPGKIKLWGNAITVDWAEPEEE----------P-------DED----------TM------------  256 (506)
T ss_pred             ecchhHHHHHhhccCCceeecCCcceeeccCcccC----------C-------Chh----------hh------------
Confidence            999999999863   44567788888887754320          1       000          01            


Q ss_pred             ccCCCcccEEEEcCCCccCCHHHHHHhhccCCcEeEeeCCC
Q psy16116        572 ITSGTRKDCIRLRGLPYEALCILMDIFFVGQQDSFVHKVPK  612 (612)
Q Consensus       572 ~~~~~~~~~VfVrNLPf~vTeeDLkefFs~~gdI~~~kip~  612 (612)
                          ..-..||||||+-++|+|.|+++|+.||.|.=+|.||
T Consensus       257 ----s~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~r  293 (506)
T KOG0117|consen  257 ----SKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPR  293 (506)
T ss_pred             ----hheeeeeeeccchhhhHHHHHHHHHhccceEEeeccc
Confidence                1235799999999999999999999999998888765

>TIGR01645 half-pint poly-U binding splicing factor, half-pint family

Probab=99.91  E-value=1.2e-23  Score=236.34  Aligned_cols=168  Identities=15%  Similarity=0.158  Sum_probs=131.7

Q ss_pred             ceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCccch
Q psy16116        342 PLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGEDF  418 (612)
Q Consensus       342 vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~e~  418 (612)
                      +||+||+++.++++|+++|.. +.+.+|+|+.|+ +|+++|||||+|.+.++|++|++ +|+..|+||.|+|.+......
T Consensus       110 LfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~~~p~  189 (612)
T TIGR01645       110 VYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNMPQ  189 (612)
T ss_pred             EEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccccccc
Confidence            346666666666666665554 458899998886 68999999999999999999996 899999999999975432110


Q ss_pred             hhccCCCCcchhhhccCCcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCH
Q psy16116        419 INVAGGNNNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKE  497 (612)
Q Consensus       419 ~~~~g~~~~e~~~~~~~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~  497 (612)
                      ......   ...  .......+|||+|||+++++++|+++|+.||        .+.+++|..|. +|++||||||+|.+.
T Consensus       190 a~~~~~---~~~--~~~~~~~rLfVgnLp~~vteedLk~lFs~FG--------~I~svrl~~D~~tgksKGfGFVeFe~~  256 (612)
T TIGR01645       190 AQPIID---MVQ--EEAKKFNRIYVASVHPDLSETDIKSVFEAFG--------EIVKCQLARAPTGRGHKGYGFIEYNNL  256 (612)
T ss_pred             cccccc---ccc--ccccccceEEeecCCCCCCHHHHHHHHhhcC--------CeeEEEEEecCCCCCcCCeEEEEECCH
Confidence            000000   000  0112346799999999999999999999999        45679999987 578999999999999


Q ss_pred             HHHHHHHH-hCCcccCCEEEEEEecc
Q psy16116        498 EEADKALS-KHKESIGIRYIELFRST  522 (612)
Q Consensus       498 edA~kAL~-~~~~~iggR~IeV~~as  522 (612)
                      ++|.+||+ +|+..++||.|+|.++.
T Consensus       257 e~A~kAI~amNg~elgGr~LrV~kAi  282 (612)
T TIGR01645       257 QSQSEAIASMNLFDLGGQYLRVGKCV  282 (612)
T ss_pred             HHHHHHHHHhCCCeeCCeEEEEEecC
Confidence            99999996 79999999999998874

In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.

>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family

Probab=99.90  E-value=1.5e-22  Score=224.49  Aligned_cols=163  Identities=12%  Similarity=0.047  Sum_probs=121.8

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH---hCCCccCceEEEEeccCcc
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK---RHKHHIDKRYIEVTKANGE  416 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~---~ng~~IggR~IeV~~s~~~  416 (612)
                      .|+|+|||++.++++|+++|.. |.+.+|++++     ++|+|||+|++.|+|++|++   .++..|+||.|.|..+...
T Consensus         4 vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~-----~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~   78 (481)
T TIGR01649         4 VVHVRNLPQDVVEADLVEALIPFGPVSYVMMLP-----GKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTSQ   78 (481)
T ss_pred             EEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEC-----CCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCCc
Confidence            4567777777777777766654 5588888874     46899999999999999997   3678899999999887654


Q ss_pred             chhhccCCCCcchhhhccCCcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCC
Q psy16116        417 DFINVAGGNNNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEK  496 (612)
Q Consensus       417 e~~~~~g~~~~e~~~~~~~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s  496 (612)
                      +..+..... ...   .......+|+|+||++++|+++|+++|+.||        .+.+|.|..+.   .+|+|||+|.+
T Consensus        79 ~~~~~~~~~-~~~---~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G--------~V~~v~i~~~~---~~~~afVef~~  143 (481)
T TIGR01649        79 EIKRDGNSD-FDS---AGPNKVLRVIVENPMYPITLDVLYQIFNPYG--------KVLRIVTFTKN---NVFQALVEFES  143 (481)
T ss_pred             ccccCCCCc-ccC---CCCCceEEEEEcCCCCCCCHHHHHHHHhccC--------CEEEEEEEecC---CceEEEEEECC
Confidence            322211000 000   0011235799999999999999999999999        45678877543   25899999999


Q ss_pred             HHHHHHHHH-hCCcccCC--EEEEEEecch
Q psy16116        497 EEEADKALS-KHKESIGI--RYIELFRSTT  523 (612)
Q Consensus       497 ~edA~kAL~-~~~~~igg--R~IeV~~as~  523 (612)
                      .++|.+|++ +|+..|.+  +.|+|..+..
T Consensus       144 ~~~A~~A~~~Lng~~i~~~~~~l~v~~sk~  173 (481)
T TIGR01649       144 VNSAQHAKAALNGADIYNGCCTLKIEYAKP  173 (481)
T ss_pred             HHHHHHHHHHhcCCcccCCceEEEEEEecC
Confidence            999999996 89999854  5788877654

Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).

>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family

Probab=99.90  E-value=2.5e-22  Score=222.62  Aligned_cols=243  Identities=15%  Similarity=0.125  Sum_probs=149.1

Q ss_pred             ceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCc--eEEEEeccCccc
Q psy16116        342 PLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDK--RYIEVTKANGED  417 (612)
Q Consensus       342 vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~Igg--R~IeV~~s~~~e  417 (612)
                      |+|.||++..++++|+++|.. +.+..|++.++.   .+|+|||+|++.++|++|++ +|+..|.+  +.|+|..+....
T Consensus        99 v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~---~~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~sk~~~  175 (481)
T TIGR01649        99 VIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKN---NVFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEYAKPTR  175 (481)
T ss_pred             EEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecC---CceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEEecCCC
Confidence            345555555555555544443 347888876643   24799999999999999996 89998854  467765543211


Q ss_pred             h----------h--h--ccCCCC--c--------c--------------------------------------hh-----
Q psy16116        418 F----------I--N--VAGGNN--N--------E--------------------------------------AQ-----  430 (612)
Q Consensus       418 ~----------~--~--~~g~~~--~--------e--------------------------------------~~-----  430 (612)
                      .          .  .  ..+...  .        .                                      ..     
T Consensus       176 l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (481)
T TIGR01649       176 LNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPHGPPSRYRPAY  255 (481)
T ss_pred             ceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCcccccccCCCcccCCCCCcccc
Confidence            0          0  0  000000  0        0                                      00     


Q ss_pred             ----------hh--ccCCcccEEEEeCCCC-CCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCH
Q psy16116        431 ----------AF--LTRGAQVIIRMRGLPY-ECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKE  497 (612)
Q Consensus       431 ----------~~--~~~~~~~~VfV~nLP~-s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~  497 (612)
                                ..  .....+.+|||+|||+ .+++++|+++|+.||        .+.+|+|+.+    ++|||||+|.+.
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG--------~V~~vki~~~----~~g~afV~f~~~  323 (481)
T TIGR01649       256 EAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYG--------NVERVKFMKN----KKETALIEMADP  323 (481)
T ss_pred             cccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcC--------CeEEEEEEeC----CCCEEEEEECCH
Confidence                      00  0012457999999998 699999999999999        4567999876    369999999999


Q ss_pred             HHHHHHHH-hCCcccCCEEEEEEecchHHHHHHhhhhcCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCcccccCCC
Q psy16116        498 EEADKALS-KHKESIGIRYIELFRSTTAEVQQVLNKTMELPKNNSLTSSNNGLSAQQPMLSHLAQVPVPYLPQHIITSGT  576 (612)
Q Consensus       498 edA~kAL~-~~~~~iggR~IeV~~as~~e~~~~~~~~~~~~~~~~~~~e~~~~s~~~~~~~~~s~~p~~~~~~~~~~~~~  576 (612)
                      ++|++||+ +|+..|+||.|+|..+..+.....  +.. .... ..... ...+.     ....+..... ......-..
T Consensus       324 ~~A~~Ai~~lng~~l~g~~l~v~~s~~~~~~~~--~~~-~~~~-~~~~~-~d~~~-----~~~~r~~~~~-~~~~~~~~~  392 (481)
T TIGR01649       324 YQAQLALTHLNGVKLFGKPLRVCPSKQQNVQPP--REG-QLDD-GLTSY-KDYSS-----SRNHRFKKPG-SANKNNIQP  392 (481)
T ss_pred             HHHHHHHHHhCCCEECCceEEEEEcccccccCC--CCC-cCcC-CCccc-ccccC-----CccccCCCcc-cccccccCC
Confidence            99999996 899999999999998754432110  000 0000 00000 00000     0000000000 000000013


Q ss_pred             cccEEEEcCCCccCCHHHHHHhhccCCc--EeEeeC
Q psy16116        577 RKDCIRLRGLPYEALCILMDIFFVGQQD--SFVHKV  610 (612)
Q Consensus       577 ~~~~VfVrNLPf~vTeeDLkefFs~~gd--I~~~ki  610 (612)
                      ...+|||+|||+++|+++|+++|+.||.  |..+|+
T Consensus       393 ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~  428 (481)
T TIGR01649       393 PSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKF  428 (481)
T ss_pred             CCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEE
Confidence            4578999999999999999999999997  554444

Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).

>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor

Probab=99.89  E-value=2.1e-22  Score=212.66  Aligned_cols=175  Identities=16%  Similarity=0.158  Sum_probs=128.6

Q ss_pred             ceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCc--eEEEEeccCcc
Q psy16116        342 PLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDK--RYIEVTKANGE  416 (612)
Q Consensus       342 vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~Igg--R~IeV~~s~~~  416 (612)
                      ++|+||+.+..+++++++|.. +.+..++++.+. .|.++|||||+|++.++|++|++ +|+..+.|  +.|.|..+...
T Consensus        92 l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a~~~  171 (352)
T TIGR01661        92 LYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKFANNP  171 (352)
T ss_pred             EEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCCC
Confidence            446666666555555555543 346777877765 58899999999999999999996 88888876  45777655322


Q ss_pred             c------hhh----------ccCCCC---------------------------------------------cc------h
Q psy16116        417 D------FIN----------VAGGNN---------------------------------------------NE------A  429 (612)
Q Consensus       417 e------~~~----------~~g~~~---------------------------------------------~e------~  429 (612)
                      .      +..          ......                                             ..      .
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (352)
T TIGR01661       172 SSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPPATDG  251 (352)
T ss_pred             CcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCccccc
Confidence            1      000          000000                                             00      0


Q ss_pred             h--hh-------ccCCcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHH
Q psy16116        430 Q--AF-------LTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEE  499 (612)
Q Consensus       430 ~--~~-------~~~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~ed  499 (612)
                      .  ..       .....+++|||+|||+++++++|+++|+.||        .+.+++|+.|. +|++||||||+|.+.++
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG--------~v~~v~i~~d~~t~~skG~aFV~F~~~~~  323 (352)
T TIGR01661       252 QTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFG--------AVQNVKIIRDLTTNQCKGYGFVSMTNYDE  323 (352)
T ss_pred             cccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCC--------CeEEEEEeEcCCCCCccceEEEEECCHHH
Confidence            0  00       0012345799999999999999999999999        45789999998 89999999999999999


Q ss_pred             HHHHHH-hCCcccCCEEEEEEecchH
Q psy16116        500 ADKALS-KHKESIGIRYIELFRSTTA  524 (612)
Q Consensus       500 A~kAL~-~~~~~iggR~IeV~~as~~  524 (612)
                      |.+||+ +||..|+||.|+|...+.+
T Consensus       324 A~~Ai~~lnG~~~~gr~i~V~~~~~~  349 (352)
T TIGR01661       324 AAMAILSLNGYTLGNRVLQVSFKTNK  349 (352)
T ss_pred             HHHHHHHhCCCEECCeEEEEEEccCC
Confidence            999996 8999999999999987644

These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).

>KOG4307|consensus

Probab=99.86  E-value=2.2e-20  Score=205.23  Aligned_cols=188  Identities=15%  Similarity=0.044  Sum_probs=156.2

Q ss_pred             CCCCCCCcccceecCCCHHHHHhhHhhcccccCeeeEEEeeCCCCCC-cceEEEEeCCHHHHHHHHHhCCCccCceEEEE
Q psy16116        332 PTPGNPVALCPLVQNIWLSLLLNTIPGYEQVLGLGGVALCLSAFGRR-NGEAIVRFIDQEHRDMALKRHKHHIDKRYIEV  410 (612)
Q Consensus       332 ~l~~~~~~l~vlV~nLp~~~~e~~fkeff~~~~v~~V~ii~d~~Grs-rG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV  410 (612)
                      .++-.++++++-+.++.+...++++++||....+..+.|..+.-+++ +|.++|+|.+..++++|++++...+-.|+|+|
T Consensus       304 tpqvv~d~~y~~~~gm~fn~~~nd~rkfF~g~~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~rn~~~~~~R~~q~  383 (944)
T KOG4307|consen  304 TPQVVSDKYYNNYKGMEFNNDFNDGRKFFPGRNAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTRNPSDDVNRPFQT  383 (944)
T ss_pred             CCcccchhheeeecccccccccchhhhhcCcccccccchhhhhcCCCcCCceEEEecCcchHHHHHhcCchhhhhcceee
Confidence            35567899999999999999999999999876778888888876666 89999999999999999999999999999999


Q ss_pred             eccCccchhhccCCCCc-------------------ch---h-hhccCCcccEEEEeCCCCCCCHHHHHHHHhcCCCCcc
Q psy16116        411 TKANGEDFINVAGGNNN-------------------EA---Q-AFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSC  467 (612)
Q Consensus       411 ~~s~~~e~~~~~g~~~~-------------------e~---~-~~~~~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~  467 (612)
                      ....+.+|.-+.+....                   +.   + ....++.+.+|||.+||+.+++.++.++|++..    
T Consensus       384 ~P~g~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~----  459 (944)
T KOG4307|consen  384 GPPGNLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAA----  459 (944)
T ss_pred             cCCCccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhh----
Confidence            98888776532111000                   00   0 012245689999999999999999999999887    


Q ss_pred             ccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEEEEEEecchHHH
Q psy16116        468 NVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRYIELFRSTTAEV  526 (612)
Q Consensus       468 ~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~IeV~~as~~e~  526 (612)
                      .|   ++.|.|...++++.++.|||.|..++++.+|+. ++++++|.|.|+|..++++.|
T Consensus       460 ~V---ed~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~~~~m  516 (944)
T KOG4307|consen  460 AV---EDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIADYAM  516 (944)
T ss_pred             hh---hheeEeccCCcccccchhhheeccccccchhhhcccccccCceEEEeechhhHHH
Confidence            23   356888888999999999999999888888886 799999999999999998887

>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family

Probab=99.86  E-value=3.9e-21  Score=215.56  Aligned_cols=215  Identities=18%  Similarity=0.120  Sum_probs=141.8

Q ss_pred             ecCCCHHH----HHhhHhhcccccCeeeEEEeeC--CCCCCcceEEEEeCCHHHHHHHHH-hC--CCccCceEEEEeccC
Q psy16116        344 VQNIWLSL----LLNTIPGYEQVLGLGGVALCLS--AFGRRNGEAIVRFIDQEHRDMALK-RH--KHHIDKRYIEVTKAN  414 (612)
Q Consensus       344 V~nLp~~~----~e~~fkeff~~~~v~~V~ii~d--~~GrsrG~AFVeF~S~EdA~kAL~-~n--g~~IggR~IeV~~s~  414 (612)
                      |+|||.+.    +.+.|+.++.  .+.++.+...  ..++++|||||+|++.++|.+|++ ++  ...+.|+.|.|..+.
T Consensus       143 VgNLP~~~TeeeL~eeFskv~e--gvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~VdwA~  220 (578)
T TIGR01648       143 VGGIPKNKKREEILEEFSKVTE--GVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVDWAE  220 (578)
T ss_pred             eecCCcchhhHHHHHHhhcccC--CceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEEeec
Confidence            44555544    4444544433  2344444322  246889999999999999999996 33  235789999997765


Q ss_pred             ccchhhccCCCCcchhhhccCCcccEEEEeCCCCCCCHHHHHHHHhcC--CCCccccccCceeEEEeeCCCCCceeEEEE
Q psy16116        415 GEDFINVAGGNNNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAG--TENSCNVMDGEEGVLFVKKPDGKATGDAFV  492 (612)
Q Consensus       415 ~~e~~~~~g~~~~e~~~~~~~~~~~~VfV~nLP~s~te~dLrefF~~~--Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV  492 (612)
                      .++-...      +     ......+|||+||++++++++|+++|+.|  |        .++.|+++       +|||||
T Consensus       221 p~~~~d~------~-----~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G--------~I~rV~~~-------rgfAFV  274 (578)
T TIGR01648       221 PEEEVDE------D-----VMAKVKILYVRNLMTTTTEEIIEKSFSEFKPG--------KVERVKKI-------RDYAFV  274 (578)
T ss_pred             ccccccc------c-----ccccccEEEEeCCCCCCCHHHHHHHHHhcCCC--------ceEEEEee-------cCeEEE
Confidence            4321100      0     01123579999999999999999999999  8        34556654       579999


Q ss_pred             EeCCHHHHHHHHH-hCCcccCCEEEEEEecchHHHHHHhhhhcCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCccc
Q psy16116        493 LFEKEEEADKALS-KHKESIGIRYIELFRSTTAEVQQVLNKTMELPKNNSLTSSNNGLSAQQPMLSHLAQVPVPYLPQHI  571 (612)
Q Consensus       493 ~F~s~edA~kAL~-~~~~~iggR~IeV~~as~~e~~~~~~~~~~~~~~~~~~~e~~~~s~~~~~~~~~s~~p~~~~~~~~  571 (612)
                      +|++.++|++||+ +|+..|+||.|+|..+...+.....+...        ..++++.+.    ..+..     .+..  
T Consensus       275 eF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~~~~~~~~~~r--------g~gg~~~~~----~~~~~-----~~g~--  335 (578)
T TIGR01648       275 HFEDREDAVKAMDELNGKELEGSEIEVTLAKPVDKKSYVRYTR--------GTGGRGKER----QAARQ-----SLGQ--  335 (578)
T ss_pred             EeCCHHHHHHHHHHhCCCEECCEEEEEEEccCCCccccccccc--------ccCCCcccc----ccccc-----ccCc--
Confidence            9999999999996 89999999999999986543221111000        000000000    00000     0001  


Q ss_pred             ccCCCcccEEEEcCCCccCCHHHHHHhhccCCcEe
Q psy16116        572 ITSGTRKDCIRLRGLPYEALCILMDIFFVGQQDSF  606 (612)
Q Consensus       572 ~~~~~~~~~VfVrNLPf~vTeeDLkefFs~~gdI~  606 (612)
                       .-+....++++.||+|+++++-+.+||...+.+.
T Consensus       336 -~~sp~s~~~~~g~~~~~~~~~~~~~~f~~~g~~~  369 (578)
T TIGR01648       336 -VYDPASRSLAYEDYYYHPPYAPSLHFPRMPGPIR  369 (578)
T ss_pred             -ccCccccccccccccccccccchhhccccCcccc
Confidence             1133567899999999999999999999987654

Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.

>KOG0123|consensus

Probab=99.86  E-value=4.5e-21  Score=205.76  Aligned_cols=191  Identities=17%  Similarity=0.144  Sum_probs=159.2

Q ss_pred             HHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCccchhhccCCCC
Q psy16116        349 LSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGEDFINVAGGNN  426 (612)
Q Consensus       349 ~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~e~~~~~g~~~  426 (612)
                      .+.++..|.+.|.. +.+.+|++++|. + +-|||||.|.+++||++||+ +|...+.|+.|+|.++.++.         
T Consensus         8 ~~v~e~~l~~~f~~~~~v~s~rvc~d~-t-slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~---------   76 (369)
T KOG0123|consen    8 PDVTEAMLFDKFSPAGPVLSIRVCRDA-T-SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDP---------   76 (369)
T ss_pred             CcCChHHHHHHhcccCCceeEEEeecC-C-ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCC---------
Confidence            35556666665554 568999999999 8 99999999999999999997 78889999999998876531         


Q ss_pred             cchhhhccCCcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-
Q psy16116        427 NEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-  505 (612)
Q Consensus       427 ~e~~~~~~~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-  505 (612)
                                  ..|||+||+.+++..+|.++|+.||    +|    -++++..|.+| ++|| ||+|+++++|++|++ 
T Consensus        77 ------------~~~~i~nl~~~~~~~~~~d~f~~~g----~i----lS~kv~~~~~g-~kg~-FV~f~~e~~a~~ai~~  134 (369)
T KOG0123|consen   77 ------------SLVFIKNLDESIDNKSLYDTFSEFG----NI----LSCKVATDENG-SKGY-FVQFESEESAKKAIEK  134 (369)
T ss_pred             ------------ceeeecCCCcccCcHHHHHHHHhhc----Ce----eEEEEEEcCCC-ceee-EEEeCCHHHHHHHHHH
Confidence                        1299999999999999999999999    45    57999999999 9999 999999999999997 


Q ss_pred             hCCcccCCEEEEEEecchHHHHHHhhhhcCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCcccccCCCcccEEEEcC
Q psy16116        506 KHKESIGIRYIELFRSTTAEVQQVLNKTMELPKNNSLTSSNNGLSAQQPMLSHLAQVPVPYLPQHIITSGTRKDCIRLRG  585 (612)
Q Consensus       506 ~~~~~iggR~IeV~~as~~e~~~~~~~~~~~~~~~~~~~e~~~~s~~~~~~~~~s~~p~~~~~~~~~~~~~~~~~VfVrN  585 (612)
                      +||..++++.|.|....+++.+..       +.     .+                            .....+.++|+|
T Consensus       135 ~ng~ll~~kki~vg~~~~~~er~~-------~~-----~~----------------------------~~~~~t~v~vk~  174 (369)
T KOG0123|consen  135 LNGMLLNGKKIYVGLFERKEEREA-------PL-----GE----------------------------YKKRFTNVYVKN  174 (369)
T ss_pred             hcCcccCCCeeEEeeccchhhhcc-------cc-----cc----------------------------hhhhhhhhheec
Confidence            699999999999988766554310       00     00                            011345799999


Q ss_pred             CCccCCHHHHHHhhccCCcEeEeeCCC
Q psy16116        586 LPYEALCILMDIFFVGQQDSFVHKVPK  612 (612)
Q Consensus       586 LPf~vTeeDLkefFs~~gdI~~~kip~  612 (612)
                      ++.+.+++.|+++|+.+++|....+++
T Consensus       175 ~~~~~~~~~l~~~f~~~g~i~s~~v~~  201 (369)
T KOG0123|consen  175 LEEDSTDEELKDLFSAYGSITSVAVMR  201 (369)
T ss_pred             cccccchHHHHHhhcccCcceEEEEee
Confidence            999999999999999999999988763

>KOG0148|consensus

Probab=99.84  E-value=2.4e-20  Score=187.40  Aligned_cols=157  Identities=16%  Similarity=0.157  Sum_probs=124.0

Q ss_pred             HHHHhhHhhcccccCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCccchhhccCCCCc
Q psy16116        350 SLLLNTIPGYEQVLGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGEDFINVAGGNNN  427 (612)
Q Consensus       350 ~~~e~~fkeff~~~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~e~~~~~g~~~~  427 (612)
                      +++++-|..|+   .+.+.++++|. +++++|||||.|-..+||++||. ++++.||+|.|+-.+++++......+...-
T Consensus        77 e~lr~aF~pFG---evS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRKp~e~n~~~ltf  153 (321)
T KOG0148|consen   77 EKLREAFAPFG---EVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRKPSEMNGKPLTF  153 (321)
T ss_pred             HHHHHHhcccc---ccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccCccccCCCCccH
Confidence            55555555444   48899999997 58999999999999999999996 999999999999988887642211111100


Q ss_pred             chhhhccCCcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHH-Hh
Q psy16116        428 EAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKAL-SK  506 (612)
Q Consensus       428 e~~~~~~~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL-~~  506 (612)
                      +.--..+....++|||+|++.-.+|++||+.|+.||        .+.+|||.+     -+||+||.|.++|.|.+|| ++
T Consensus       154 deV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG--------~I~EVRvFk-----~qGYaFVrF~tkEaAahAIv~m  220 (321)
T KOG0148|consen  154 DEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFG--------PIQEVRVFK-----DQGYAFVRFETKEAAAHAIVQM  220 (321)
T ss_pred             HHHhccCCCCCceEEeCCcCccccHHHHHHhcccCC--------cceEEEEec-----ccceEEEEecchhhHHHHHHHh
Confidence            000011245678899999999999999999999999        446799984     4699999999999999999 58


Q ss_pred             CCcccCCEEEEEEecc
Q psy16116        507 HKESIGIRYIELFRST  522 (612)
Q Consensus       507 ~~~~iggR~IeV~~as  522 (612)
                      |+.+|+|..|+.+...
T Consensus       221 Nntei~G~~VkCsWGK  236 (321)
T KOG0148|consen  221 NNTEIGGQLVRCSWGK  236 (321)
T ss_pred             cCceeCceEEEEeccc
Confidence            9999999999888754

>KOG0123|consensus

Probab=99.82  E-value=1.7e-19  Score=193.62  Aligned_cols=220  Identities=16%  Similarity=0.153  Sum_probs=165.9

Q ss_pred             ceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCccchh
Q psy16116        342 PLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGEDFI  419 (612)
Q Consensus       342 vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~e~~  419 (612)
                      ++|.||+.+...+.|.++|.. +.+.++++..+.+| ++|| ||+|+++++|++|++ +||..+.++.|.|-....++++
T Consensus        79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er  156 (369)
T KOG0123|consen   79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEER  156 (369)
T ss_pred             eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhh
Confidence            556666665544444444433 44889999999999 9999 999999999999997 7999999999999777665554


Q ss_pred             hccCCCCcchhhhccCCcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHH
Q psy16116        420 NVAGGNNNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEE  499 (612)
Q Consensus       420 ~~~g~~~~e~~~~~~~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~ed  499 (612)
                      ......  ..+      .-..++++|++.++++++|+++|..+|        .+.++.++.+..|+++|||||.|.++++
T Consensus       157 ~~~~~~--~~~------~~t~v~vk~~~~~~~~~~l~~~f~~~g--------~i~s~~v~~~~~g~~~~~gfv~f~~~e~  220 (369)
T KOG0123|consen  157 EAPLGE--YKK------RFTNVYVKNLEEDSTDEELKDLFSAYG--------SITSVAVMRDSIGKSKGFGFVNFENPED  220 (369)
T ss_pred             cccccc--hhh------hhhhhheeccccccchHHHHHhhcccC--------cceEEEEeecCCCCCCCccceeecChhH
Confidence            322221  111      123499999999999999999999999        5678999999999999999999999999


Q ss_pred             HHHHHH-hCCcccCCEEEEEEecchHHHH-HHhhhhcCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCcccccCCCc
Q psy16116        500 ADKALS-KHKESIGIRYIELFRSTTAEVQ-QVLNKTMELPKNNSLTSSNNGLSAQQPMLSHLAQVPVPYLPQHIITSGTR  577 (612)
Q Consensus       500 A~kAL~-~~~~~iggR~IeV~~as~~e~~-~~~~~~~~~~~~~~~~~e~~~~s~~~~~~~~~s~~p~~~~~~~~~~~~~~  577 (612)
                      |.+|++ +++...++..+.|..+.++... ....+...        ....            .+.           ....
T Consensus       221 a~~av~~l~~~~~~~~~~~V~~aqkk~e~~~~l~~~~~--------~~~~------------~~~-----------~~~~  269 (369)
T KOG0123|consen  221 AKKAVETLNGKIFGDKELYVGRAQKKSEREAELKRKFE--------QEFA------------KRS-----------VSLQ  269 (369)
T ss_pred             HHHHHHhccCCcCCccceeecccccchhhHHHHhhhhH--------hhhh------------hcc-----------cccc
Confidence            999997 7999999988999888652221 11111100        0000            000           0123


Q ss_pred             ccEEEEcCCCccCCHHHHHHhhccCCcEeEeeC
Q psy16116        578 KDCIRLRGLPYEALCILMDIFFVGQQDSFVHKV  610 (612)
Q Consensus       578 ~~~VfVrNLPf~vTeeDLkefFs~~gdI~~~ki  610 (612)
                      ...|||+||+-.++.++|++.|+.||.|+..+|
T Consensus       270 ~~nl~vknld~~~~~e~L~~~f~~~GeI~s~kv  302 (369)
T KOG0123|consen  270 GANLYVKNLDETLSDEKLRKIFSSFGEITSAKV  302 (369)
T ss_pred             ccccccccCccccchhHHHHHHhcccceeeEEE
Confidence            467999999999999999999999999998765

>TIGR01659 sex-lethal sex-lethal family splicing factor

Probab=99.79  E-value=3.8e-19  Score=189.70  Aligned_cols=119  Identities=13%  Similarity=0.180  Sum_probs=102.4

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIR  514 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR  514 (612)
                      ..++|||+|||+++||++|+++|+.||        .+..|+|+.|. +|+++|||||+|.++++|++||+ +++..+.+|
T Consensus       106 ~~~~LfVgnLp~~~te~~L~~lF~~~G--------~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr  177 (346)
T TIGR01659       106 SGTNLIVNYLPQDMTDRELYALFRTIG--------PINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNK  177 (346)
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHhcC--------CEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCc
Confidence            457899999999999999999999999        45679999886 79999999999999999999995 799999999


Q ss_pred             EEEEEecchHHHHHHhhhhcCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCcccccCCCcccEEEEcCCCccCCHHH
Q psy16116        515 YIELFRSTTAEVQQVLNKTMELPKNNSLTSSNNGLSAQQPMLSHLAQVPVPYLPQHIITSGTRKDCIRLRGLPYEALCIL  594 (612)
Q Consensus       515 ~IeV~~as~~e~~~~~~~~~~~~~~~~~~~e~~~~s~~~~~~~~~s~~p~~~~~~~~~~~~~~~~~VfVrNLPf~vTeeD  594 (612)
                      .|+|..+....                  .                              ....++|||+|||+++|++|
T Consensus       178 ~i~V~~a~p~~------------------~------------------------------~~~~~~lfV~nLp~~vtee~  209 (346)
T TIGR01659       178 RLKVSYARPGG------------------E------------------------------SIKDTNLYVTNLPRTITDDQ  209 (346)
T ss_pred             eeeeecccccc------------------c------------------------------ccccceeEEeCCCCcccHHH
Confidence            99997643210                  0                              01235799999999999999


Q ss_pred             HHHhhccCCcEeEeeCC
Q psy16116        595 MDIFFVGQQDSFVHKVP  611 (612)
Q Consensus       595 LkefFs~~gdI~~~kip  611 (612)
                      |+++|+.|++|..++|+
T Consensus       210 L~~~F~~fG~V~~v~i~  226 (346)
T TIGR01659       210 LDTIFGKYGQIVQKNIL  226 (346)
T ss_pred             HHHHHHhcCCEEEEEEe
Confidence            99999999999887765

This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).

>KOG0145|consensus

Probab=99.79  E-value=1.7e-18  Score=173.07  Aligned_cols=238  Identities=16%  Similarity=0.147  Sum_probs=157.3

Q ss_pred             eecCCCHHHHHhhHhhcccccCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCccchhh
Q psy16116        343 LVQNIWLSLLLNTIPGYEQVLGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGEDFIN  420 (612)
Q Consensus       343 lV~nLp~~~~e~~fkeff~~~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~e~~~  420 (612)
                      ++.|++.+.++..|...   +.+.++++++|+ .|.|-|||||.|.+++||++|+. +|+-.+..+.|+|..+....-  
T Consensus        49 LPQ~MTqdE~rSLF~Si---GeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyARPSs~--  123 (360)
T KOG0145|consen   49 LPQNMTQDELRSLFGSI---GEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYARPSSD--  123 (360)
T ss_pred             cccccCHHHHHHHhhcc---cceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEeccCChh--
Confidence            34555555555544433   458999999998 69999999999999999999996 899999999999977654210  


Q ss_pred             ccCCCCcchhhhccCCcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHH
Q psy16116        421 VAGGNNNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEE  499 (612)
Q Consensus       421 ~~g~~~~e~~~~~~~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~ed  499 (612)
                             ..       .+..|||.|||.+.|..||.++|+.||    +|+    .-+|+.|. +|-+||.|||.|+..++
T Consensus       124 -------~I-------k~aNLYvSGlPktMtqkelE~iFs~fG----rII----tSRiL~dqvtg~srGVgFiRFDKr~E  181 (360)
T KOG0145|consen  124 -------SI-------KDANLYVSGLPKTMTQKELEQIFSPFG----RII----TSRILVDQVTGLSRGVGFIRFDKRIE  181 (360)
T ss_pred             -------hh-------cccceEEecCCccchHHHHHHHHHHhh----hhh----hhhhhhhcccceecceeEEEecchhH
Confidence                   00       113499999999999999999999999    564    25666676 89999999999999999


Q ss_pred             HHHHHH-hCCcccCC--EEEEEEecchHHHHHH---hhhhcCCCCCCCCCCC--C----CCC--CCcccccccccCC-CC
Q psy16116        500 ADKALS-KHKESIGI--RYIELFRSTTAEVQQV---LNKTMELPKNNSLTSS--N----NGL--SAQQPMLSHLAQV-PV  564 (612)
Q Consensus       500 A~kAL~-~~~~~igg--R~IeV~~as~~e~~~~---~~~~~~~~~~~~~~~e--~----~~~--s~~~~~~~~~s~~-p~  564 (612)
                      |+.||. +||+.--|  -.|.|.-+....-...   +...-..+.  .+-.+  +    +.+  .-. .+.....+. |.
T Consensus       182 Ae~AIk~lNG~~P~g~tepItVKFannPsq~t~~a~ls~ly~sp~--rr~~Gp~hh~~~r~r~~~~~-~~~~~~~rfsP~  258 (360)
T KOG0145|consen  182 AEEAIKGLNGQKPSGCTEPITVKFANNPSQKTNQALLSQLYQSPA--RRYGGPMHHQAQRFRLDNLL-NPHAAQARFSPM  258 (360)
T ss_pred             HHHHHHhccCCCCCCCCCCeEEEecCCcccccchhhhHHhhcCcc--ccCCCcccchhhhhcccccc-chhhhhccCCCc
Confidence            999996 78877655  4688887743321110   000000000  00000  0    000  000 000000000 00


Q ss_pred             C-----CCC-cccccCCCcccEEEEcCCCccCCHHHHHHhhccCCcEeEeeC
Q psy16116        565 P-----YLP-QHIITSGTRKDCIRLRGLPYEALCILMDIFFVGQQDSFVHKV  610 (612)
Q Consensus       565 ~-----~~~-~~~~~~~~~~~~VfVrNLPf~vTeeDLkefFs~~gdI~~~ki  610 (612)
                      .     ... -...+.....-||||=||..+++|.-|.++|..||-|.-+||
T Consensus       259 ~~d~m~~l~~~~lp~~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKv  310 (360)
T KOG0145|consen  259 TIDGMSGLAGVNLPGGPGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKV  310 (360)
T ss_pred             cccccceeeeeccCCCCCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEE
Confidence            0     000 000011234679999999999999999999999998887776

>KOG4205|consensus

Probab=99.79  E-value=1.3e-19  Score=189.45  Aligned_cols=169  Identities=21%  Similarity=0.271  Sum_probs=141.0

Q ss_pred             ceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccCccchh
Q psy16116        342 PLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGEDFI  419 (612)
Q Consensus       342 vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~~~e~~  419 (612)
                      ++|++|+++++++-|+++|.. +.+.++++++|+ .||++||+||+|++.+.+.++|....+.|+||.|++.++..++..
T Consensus         9 lfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~r~~~   88 (311)
T KOG4205|consen    9 LFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVSREDQ   88 (311)
T ss_pred             eeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccCcccc
Confidence            347777777777777776654 557788887876 599999999999999999999998889999999999888765433


Q ss_pred             hccCCCCcchhhhccCCcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHH
Q psy16116        420 NVAGGNNNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEE  498 (612)
Q Consensus       420 ~~~g~~~~e~~~~~~~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~e  498 (612)
                      ...+..          .....|||++||.++++++++++|+.+|        .+..+.+++|. +.+++|||||.|.+++
T Consensus        89 ~~~~~~----------~~tkkiFvGG~~~~~~e~~~r~yfe~~g--------~v~~~~~~~d~~~~~~rgFgfv~~~~e~  150 (311)
T KOG4205|consen   89 TKVGRH----------LRTKKIFVGGLPPDTTEEDFKDYFEQFG--------KVADVVIMYDKTTSRPRGFGFVTFDSED  150 (311)
T ss_pred             cccccc----------cceeEEEecCcCCCCchHHHhhhhhccc--------eeEeeEEeecccccccccceeeEecccc
Confidence            221111          1234699999999999999999999999        34568888887 6899999999999999


Q ss_pred             HHHHHHHhCCcccCCEEEEEEecchHHHHH
Q psy16116        499 EADKALSKHKESIGIRYIELFRSTTAEVQQ  528 (612)
Q Consensus       499 dA~kAL~~~~~~iggR~IeV~~as~~e~~~  528 (612)
                      .+++++.++.+.|+++.|+|..+.++++..
T Consensus       151 sVdkv~~~~f~~~~gk~vevkrA~pk~~~~  180 (311)
T KOG4205|consen  151 SVDKVTLQKFHDFNGKKVEVKRAIPKEVMQ  180 (311)
T ss_pred             ccceecccceeeecCceeeEeeccchhhcc
Confidence            999999999999999999999998888765

>KOG0131|consensus

Probab=99.78  E-value=6.2e-19  Score=168.77  Aligned_cols=163  Identities=17%  Similarity=0.140  Sum_probs=135.3

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCC-CCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCccc
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAF-GRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGED  417 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~-GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~e  417 (612)
                      +++++||+....++.+.++|.. +.+.+|++.+|+- ...+|||||+|.++|||+.|++ ++.-.+-||.|+|.+++..+
T Consensus        11 tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas~~~   90 (203)
T KOG0131|consen   11 TLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKASAHQ   90 (203)
T ss_pred             eEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEeccccc
Confidence            3448899999999999998876 6789999998874 5689999999999999999999 67778889999998877321


Q ss_pred             hhhccCCCCcchhhhccCCcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCC
Q psy16116        418 FINVAGGNNNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEK  496 (612)
Q Consensus       418 ~~~~~g~~~~e~~~~~~~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s  496 (612)
                      ...               ..+..+||+||.+.++|.-|.+.|+.||.    ++   ..-.|++|+ +|+++|||||.|++
T Consensus        91 ~nl---------------~vganlfvgNLd~~vDe~~L~dtFsafG~----l~---~~P~i~rd~~tg~~~~~g~i~~~s  148 (203)
T KOG0131|consen   91 KNL---------------DVGANLFVGNLDPEVDEKLLYDTFSAFGV----LI---SPPKIMRDPDTGNPKGFGFINYAS  148 (203)
T ss_pred             ccc---------------cccccccccccCcchhHHHHHHHHHhccc----cc---cCCcccccccCCCCCCCeEEechh
Confidence            110               01245999999999999999999999992    32   234577777 58999999999999


Q ss_pred             HHHHHHHHH-hCCcccCCEEEEEEecchHH
Q psy16116        497 EEEADKALS-KHKESIGIRYIELFRSTTAE  525 (612)
Q Consensus       497 ~edA~kAL~-~~~~~iggR~IeV~~as~~e  525 (612)
                      .|.+++|++ ++++++++|.|.|..+.+++
T Consensus       149 feasd~ai~s~ngq~l~nr~itv~ya~k~~  178 (203)
T KOG0131|consen  149 FEASDAAIGSMNGQYLCNRPITVSYAFKKD  178 (203)
T ss_pred             HHHHHHHHHHhccchhcCCceEEEEEEecC
Confidence            999999996 79999999999999876543

>KOG0127|consensus

Probab=99.77  E-value=4.4e-18  Score=183.76  Aligned_cols=179  Identities=18%  Similarity=0.229  Sum_probs=137.4

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCccc-
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGED-  417 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~e-  417 (612)
                      +++|+||||.+.+.+|+..|.. |.+.+|.|.+..+|+-.|||||.|....+|.+||+ .|++.|+||.|-|-++...+ 
T Consensus       119 rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~  198 (678)
T KOG0127|consen  119 RLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDT  198 (678)
T ss_pred             eEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeeccccc
Confidence            5668888888777777765554 55899999999999999999999999999999997 78999999999986653211 


Q ss_pred             hhh-----------------------ccCC----------------------------CCcc-hhhh-------------
Q psy16116        418 FIN-----------------------VAGG----------------------------NNNE-AQAF-------------  432 (612)
Q Consensus       418 ~~~-----------------------~~g~----------------------------~~~e-~~~~-------------  432 (612)
                      |..                       ..+.                            .+.+ .+..             
T Consensus       199 ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k  278 (678)
T KOG0127|consen  199 YEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKESDK  278 (678)
T ss_pred             ccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCcccc
Confidence            100                       0000                            0000 0000             


Q ss_pred             ---c-----cCCcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHH
Q psy16116        433 ---L-----TRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKA  503 (612)
Q Consensus       433 ---~-----~~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kA  503 (612)
                         .     +...+.+||||||||++||++|++.|+.||        +++.+.|+.++ +|+++|.|||.|.+..++..|
T Consensus       279 ~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG--------~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~c  350 (678)
T KOG0127|consen  279 KAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFG--------EVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNC  350 (678)
T ss_pred             hhccccccccccccceEEEecCCccccHHHHHHHHHhhc--------cceeEEEEeccCCCCcccceEEEeccHHHHHHH
Confidence               0     012458999999999999999999999999        56788999887 799999999999999999999


Q ss_pred             HHhC------C-cccCCEEEEEEecc-hHHHH
Q psy16116        504 LSKH------K-ESIGIRYIELFRST-TAEVQ  527 (612)
Q Consensus       504 L~~~------~-~~iggR~IeV~~as-~~e~~  527 (612)
                      |+.-      + -.+.||.+.|..+- +++..
T Consensus       351 i~~Aspa~e~g~~ll~GR~Lkv~~Av~RkeA~  382 (678)
T KOG0127|consen  351 IEAASPASEDGSVLLDGRLLKVTLAVTRKEAA  382 (678)
T ss_pred             HHhcCccCCCceEEEeccEEeeeeccchHHHH
Confidence            9742      4 67899999999984 44433

>KOG0148|consensus

Probab=99.77  E-value=3.1e-18  Score=172.22  Aligned_cols=185  Identities=15%  Similarity=0.120  Sum_probs=135.6

Q ss_pred             ceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccCccchhh
Q psy16116        342 PLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGEDFIN  420 (612)
Q Consensus       342 vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~~~e~~~  420 (612)
                      ++|+||+.+.+|+||-.+|.. +.+...+||.+                                 .+.|..++...-. 
T Consensus         9 lyvgnld~~vte~~i~~lf~qig~v~~~k~i~~---------------------------------e~~v~wa~~p~nQ-   54 (321)
T KOG0148|consen    9 LYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD---------------------------------ELKVNWATAPGNQ-   54 (321)
T ss_pred             EEeeccChhhHHHHHHHHHHhccccccceeehh---------------------------------hhccccccCcccC-
Confidence            348899999999999988875 55778888766                                 2334333322000 


Q ss_pred             ccCCCCcchhhhccCCcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHH
Q psy16116        421 VAGGNNNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEE  499 (612)
Q Consensus       421 ~~g~~~~e~~~~~~~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~ed  499 (612)
                           + +.    +....+-|||+.|...++.++||+.|.+||    +    +...+|++|. ++|+||||||.|-+.+|
T Consensus        55 -----s-k~----t~~~hfhvfvgdls~eI~~e~lr~aF~pFG----e----vS~akvirD~~T~KsKGYgFVSf~~k~d  116 (321)
T KOG0148|consen   55 -----S-KP----TSNQHFHVFVGDLSPEIDNEKLREAFAPFG----E----VSDAKVIRDMNTGKSKGYGFVSFPNKED  116 (321)
T ss_pred             -----C-CC----ccccceeEEehhcchhcchHHHHHHhcccc----c----cccceEeecccCCcccceeEEeccchHH
Confidence                 0 00    011235699999999999999999999999    4    4669999997 89999999999999999


Q ss_pred             HHHHHH-hCCcccCCEEEEEEecchHHHHHHhhhhcCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCcccccCCCcc
Q psy16116        500 ADKALS-KHKESIGIRYIELFRSTTAEVQQVLNKTMELPKNNSLTSSNNGLSAQQPMLSHLAQVPVPYLPQHIITSGTRK  578 (612)
Q Consensus       500 A~kAL~-~~~~~iggR~IeV~~as~~e~~~~~~~~~~~~~~~~~~~e~~~~s~~~~~~~~~s~~p~~~~~~~~~~~~~~~  578 (612)
                      |++||. |||+.||+|.|+-..++++-.     +....+.                   +.+.    .+.    .++..+
T Consensus       117 AEnAI~~MnGqWlG~R~IRTNWATRKp~-----e~n~~~l-------------------tfde----V~N----Qssp~N  164 (321)
T KOG0148|consen  117 AENAIQQMNGQWLGRRTIRTNWATRKPS-----EMNGKPL-------------------TFDE----VYN----QSSPDN  164 (321)
T ss_pred             HHHHHHHhCCeeeccceeeccccccCcc-----ccCCCCc-------------------cHHH----Hhc----cCCCCC
Confidence            999995 899999999999888765430     0000000                   0000    111    134578


Q ss_pred             cEEEEcCCCccCCHHHHHHhhccCCcEeEeeC
Q psy16116        579 DCIRLRGLPYEALCILMDIFFVGQQDSFVHKV  610 (612)
Q Consensus       579 ~~VfVrNLPf~vTeeDLkefFs~~gdI~~~ki  610 (612)
                      ++|||+|++-..||++|++.|+.||+|.-++|
T Consensus       165 tsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRv  196 (321)
T KOG0148|consen  165 TSVYVGNIASGLTEDLMRQTFSPFGPIQEVRV  196 (321)
T ss_pred             ceEEeCCcCccccHHHHHHhcccCCcceEEEE
Confidence            89999999999999999999999987766554

>KOG0144|consensus

Probab=99.75  E-value=3.8e-18  Score=180.24  Aligned_cols=161  Identities=19%  Similarity=0.213  Sum_probs=127.4

Q ss_pred             cccceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCC-CccCc--eEEEEec
Q psy16116        339 ALCPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHK-HHIDK--RYIEVTK  412 (612)
Q Consensus       339 ~l~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng-~~Igg--R~IeV~~  412 (612)
                      .+..||+.+|....|.+++++|+. +.|.+|.|++|+ +|.++|+|||+|.+.+||++|+. +|+ +.|-|  ..|.|+.
T Consensus        34 ~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~  113 (510)
T KOG0144|consen   34 AVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKY  113 (510)
T ss_pred             hhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeecc
Confidence            344557777777777777777665 459999999998 58899999999999999999996 555 44544  4577766


Q ss_pred             cCccchhhccCCCCcchhhhccCCcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEE
Q psy16116        413 ANGEDFINVAGGNNNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFV  492 (612)
Q Consensus       413 s~~~e~~~~~g~~~~e~~~~~~~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV  492 (612)
                      +..+..+-               .+++.|||+-|+..++|.||+++|+.||        -++.+.|++|.+|.+||+|||
T Consensus       114 Ad~E~er~---------------~~e~KLFvg~lsK~~te~evr~iFs~fG--------~Ied~~ilrd~~~~sRGcaFV  170 (510)
T KOG0144|consen  114 ADGERERI---------------VEERKLFVGMLSKQCTENEVREIFSRFG--------HIEDCYILRDPDGLSRGCAFV  170 (510)
T ss_pred             cchhhhcc---------------ccchhhhhhhccccccHHHHHHHHHhhC--------ccchhhheecccccccceeEE
Confidence            65431110               1245699999999999999999999999        357799999999999999999


Q ss_pred             EeCCHHHHHHHHH-hCC-cccCC--EEEEEEecc
Q psy16116        493 LFEKEEEADKALS-KHK-ESIGI--RYIELFRST  522 (612)
Q Consensus       493 ~F~s~edA~kAL~-~~~-~~igg--R~IeV~~as  522 (612)
                      .|.+.|.|..||+ +|+ +.|.|  -.+-|+.++
T Consensus       171 ~fstke~A~~Aika~ng~~tmeGcs~PLVVkFAD  204 (510)
T KOG0144|consen  171 KFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFAD  204 (510)
T ss_pred             EEehHHHHHHHHHhhccceeeccCCCceEEEecc
Confidence            9999999999996 665 56766  468888774

>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor

Probab=99.75  E-value=1.8e-17  Score=183.84  Aligned_cols=167  Identities=12%  Similarity=0.121  Sum_probs=122.0

Q ss_pred             HHHHhhHhhcccccCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCccchhhc---cC-
Q psy16116        350 SLLLNTIPGYEQVLGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGEDFINV---AG-  423 (612)
Q Consensus       350 ~~~e~~fkeff~~~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~e~~~~---~g-  423 (612)
                      ++++++|+.|+   .+..+.|+++. +|+++|||||+|.+.++|++||+ +++..|+|+.|.|..+........   .. 
T Consensus       310 ~~l~~~f~~~G---~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~  386 (509)
T TIGR01642       310 DQIKELLESFG---DLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGANQATIDTSNG  386 (509)
T ss_pred             HHHHHHHHhcC---CeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCCCCCCcccccc
Confidence            55555555554   47888888875 68999999999999999999996 899999999999977643211000   00 


Q ss_pred             CCC-----cc-hhhh--ccCCcccEEEEeCCCCCC----------CHHHHHHHHhcCCCCccccccCceeEEEeeCC---
Q psy16116        424 GNN-----NE-AQAF--LTRGAQVIIRMRGLPYEC----------TAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP---  482 (612)
Q Consensus       424 ~~~-----~e-~~~~--~~~~~~~~VfV~nLP~s~----------te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~---  482 (612)
                      ...     .. ....  .......+|+|.||.+.-          ..+||++.|+.||        .+..|.|+.+.   
T Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G--------~v~~v~i~~~~~~~  458 (509)
T TIGR01642       387 MAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYG--------PLINIVIPRPNGDR  458 (509)
T ss_pred             ccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcC--------CeeEEEeeccCcCC
Confidence            000     00 0000  012245789999997431          2368999999999        45678888652   


Q ss_pred             -CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEEEEEEecchHHHH
Q psy16116        483 -DGKATGDAFVLFEKEEEADKALS-KHKESIGIRYIELFRSTTAEVQ  527 (612)
Q Consensus       483 -~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~IeV~~as~~e~~  527 (612)
                       .+...|+|||+|.+.++|++||+ +||..|+||.|.|.......+.
T Consensus       459 ~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~~~~~  505 (509)
T TIGR01642       459 NSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGEDCYK  505 (509)
T ss_pred             CcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCHHHhh
Confidence             35678999999999999999996 8999999999999998876653

Members of this subfamily are found in plants, metazoa and fungi.

>TIGR01622 SF-CC1 splicing factor, CC1-like family

Probab=99.73  E-value=2.5e-17  Score=180.43  Aligned_cols=131  Identities=15%  Similarity=0.105  Sum_probs=104.5

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHHhCCcccCCEE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALSKHKESIGIRY  515 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~~~~~~iggR~  515 (612)
                      ...+|||+|||+++++++|++||+.+|        .+..|+|+.|. +|+++|||||+|.+.++|.+||.+++..+.|+.
T Consensus        88 ~~~~l~V~nlp~~~~~~~l~~~F~~~G--------~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~  159 (457)
T TIGR01622        88 DDRTVFVLQLALKARERDLYEFFSKVG--------KVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRP  159 (457)
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHhcC--------CeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCee
Confidence            457899999999999999999999999        45679999986 789999999999999999999999999999999


Q ss_pred             EEEEecchHHHHHHhhhhcCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCcccccCCCcccEEEEcCCCccCCHHHH
Q psy16116        516 IELFRSTTAEVQQVLNKTMELPKNNSLTSSNNGLSAQQPMLSHLAQVPVPYLPQHIITSGTRKDCIRLRGLPYEALCILM  595 (612)
Q Consensus       516 IeV~~as~~e~~~~~~~~~~~~~~~~~~~e~~~~s~~~~~~~~~s~~p~~~~~~~~~~~~~~~~~VfVrNLPf~vTeeDL  595 (612)
                      |.|..+..+..... . ..         ..                .+         .......+|||+|||+++|+++|
T Consensus       160 i~v~~~~~~~~~~~-~-~~---------~~----------------~~---------~~~p~~~~l~v~nl~~~~te~~l  203 (457)
T TIGR01622       160 IIVQSSQAEKNRAA-K-AA---------TH----------------QP---------GDIPNFLKLYVGNLHFNITEQEL  203 (457)
T ss_pred             eEEeecchhhhhhh-h-cc---------cc----------------cC---------CCCCCCCEEEEcCCCCCCCHHHH
Confidence            99986543211100 0 00         00                00         00123578999999999999999


Q ss_pred             HHhhccCCcEeEeeCC
Q psy16116        596 DIFFVGQQDSFVHKVP  611 (612)
Q Consensus       596 kefFs~~gdI~~~kip  611 (612)
                      +++|+.||.|..++++
T Consensus       204 ~~~f~~~G~i~~v~~~  219 (457)
T TIGR01622       204 RQIFEPFGDIEDVQLH  219 (457)
T ss_pred             HHHHHhcCCeEEEEEE
Confidence            9999999988777654

A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.

>TIGR01645 half-pint poly-U binding splicing factor, half-pint family

Probab=99.73  E-value=9.1e-18  Score=189.05  Aligned_cols=129  Identities=16%  Similarity=0.201  Sum_probs=102.8

Q ss_pred             ccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEE
Q psy16116        438 QVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIRY  515 (612)
Q Consensus       438 ~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~  515 (612)
                      .++|||+|||+++++++|+++|+.||        .+.+|+|+.|+ +|+++|||||+|.+.++|++||+ +|+..|+||.
T Consensus       107 ~~rLfVGnLp~~~tEe~Lr~lF~~fG--------~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~  178 (612)
T TIGR01645       107 MCRVYVGSISFELREDTIRRAFDPFG--------PIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRN  178 (612)
T ss_pred             CCEEEEcCCCCCCCHHHHHHHHHccC--------CEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecce
Confidence            46799999999999999999999999        45779999986 79999999999999999999996 7999999999


Q ss_pred             EEEEecchHHHHHHhhhhcCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCcccccCCCcccEEEEcCCCccCCHHHH
Q psy16116        516 IELFRSTTAEVQQVLNKTMELPKNNSLTSSNNGLSAQQPMLSHLAQVPVPYLPQHIITSGTRKDCIRLRGLPYEALCILM  595 (612)
Q Consensus       516 IeV~~as~~e~~~~~~~~~~~~~~~~~~~e~~~~s~~~~~~~~~s~~p~~~~~~~~~~~~~~~~~VfVrNLPf~vTeeDL  595 (612)
                      |+|......            +.  ..+.. +                  ....    .....++|||+|||+++++++|
T Consensus       179 IkV~rp~~~------------p~--a~~~~-~------------------~~~~----~~~~~~rLfVgnLp~~vteedL  221 (612)
T TIGR01645       179 IKVGRPSNM------------PQ--AQPII-D------------------MVQE----EAKKFNRIYVASVHPDLSETDI  221 (612)
T ss_pred             eeecccccc------------cc--ccccc-c------------------cccc----cccccceEEeecCCCCCCHHHH
Confidence            999732110            00  00000 0                  0000    0123468999999999999999


Q ss_pred             HHhhccCCcEeEeeCC
Q psy16116        596 DIFFVGQQDSFVHKVP  611 (612)
Q Consensus       596 kefFs~~gdI~~~kip  611 (612)
                      +++|+.||+|..++|+
T Consensus       222 k~lFs~FG~I~svrl~  237 (612)
T TIGR01645       222 KSVFEAFGEIVKCQLA  237 (612)
T ss_pred             HHHHhhcCCeeEEEEE
Confidence            9999999999888775

In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.

>KOG0117|consensus

Probab=99.72  E-value=3.6e-17  Score=173.61  Aligned_cols=170  Identities=18%  Similarity=0.117  Sum_probs=129.8

Q ss_pred             CCCCCCcccceecCCCHHHHHhhHhhcccc--cCeeeEEEeeCCC--CCCcceEEEEeCCHHHHHHHHHh--CC-CccCc
Q psy16116        333 TPGNPVALCPLVQNIWLSLLLNTIPGYEQV--LGLGGVALCLSAF--GRRNGEAIVRFIDQEHRDMALKR--HK-HHIDK  405 (612)
Q Consensus       333 l~~~~~~l~vlV~nLp~~~~e~~fkeff~~--~~v~~V~ii~d~~--GrsrG~AFVeF~S~EdA~kAL~~--ng-~~Igg  405 (612)
                      +--..+++++||+|+|...+++.|.+-++.  -++.+|.+....+  +|+||||||+|.|...|..|-.+  ++ -.+.|
T Consensus       158 vc~Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwg  237 (506)
T KOG0117|consen  158 VCVSVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWG  237 (506)
T ss_pred             EEEeeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecC
Confidence            334567789999999998887777654443  3477777776653  78999999999999999988863  33 34667


Q ss_pred             eEEEEeccCccchhhccCCCCcchhhhccCCcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCC
Q psy16116        406 RYIEVTKANGEDFINVAGGNNNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGK  485 (612)
Q Consensus       406 R~IeV~~s~~~e~~~~~g~~~~e~~~~~~~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~Gr  485 (612)
                      ..|.|.++..++-..   ..  .      ...-..||||||+-++||+.|++.|+.||        .+++|+.++|    
T Consensus       238 n~~tVdWAep~~e~d---ed--~------ms~VKvLYVRNL~~~tTeE~lk~~F~~~G--------~veRVkk~rD----  294 (506)
T KOG0117|consen  238 NAITVDWAEPEEEPD---ED--T------MSKVKVLYVRNLMESTTEETLKKLFNEFG--------KVERVKKPRD----  294 (506)
T ss_pred             CcceeeccCcccCCC---hh--h------hhheeeeeeeccchhhhHHHHHHHHHhcc--------ceEEeecccc----
Confidence            778887765432100   00  0      01224699999999999999999999999        5577776644    


Q ss_pred             ceeEEEEEeCCHHHHHHHHH-hCCcccCCEEEEEEecchHHHHH
Q psy16116        486 ATGDAFVLFEKEEEADKALS-KHKESIGIRYIELFRSTTAEVQQ  528 (612)
Q Consensus       486 skG~AFV~F~s~edA~kAL~-~~~~~iggR~IeV~~as~~e~~~  528 (612)
                         ||||.|.+.++|.+||+ +|+..|+|..|+|..+.+.+-++
T Consensus       295 ---YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~k~k  335 (506)
T KOG0117|consen  295 ---YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVDKKK  335 (506)
T ss_pred             ---eeEEeecchHHHHHHHHHhcCceecCceEEEEecCChhhhc
Confidence               99999999999999996 89999999999999997665443

>KOG0124|consensus

Probab=99.68  E-value=4.9e-17  Score=168.66  Aligned_cols=168  Identities=17%  Similarity=0.215  Sum_probs=133.9

Q ss_pred             ccceecCCCHHHHHhhHhhccc-ccCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCcc
Q psy16116        340 LCPLVQNIWLSLLLNTIPGYEQ-VLGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGE  416 (612)
Q Consensus       340 l~vlV~nLp~~~~e~~fkeff~-~~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~  416 (612)
                      ++|+|+.++|+.-|+-++..|. ++.+++|.|.-|+ +|+++|||||+|+-+|.|+.||+ +|+..+|||.|+|-+-++-
T Consensus       114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNm  193 (544)
T KOG0124|consen  114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNM  193 (544)
T ss_pred             HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCCC
Confidence            3566888888888888886554 4679999998776 68999999999999999999997 8999999999999644331


Q ss_pred             -chhhccCCCCcchhhhccCCcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCC-CceeEEEEEe
Q psy16116        417 -DFINVAGGNNNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDG-KATGDAFVLF  494 (612)
Q Consensus       417 -e~~~~~g~~~~e~~~~~~~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~G-rskG~AFV~F  494 (612)
                       +-.........+.+      .-++|||..+..+.+|+||+..|+.||    +|    ..+.+..+.+| ..|||||++|
T Consensus       194 pQAQpiID~vqeeAk------~fnRiYVaSvHpDLSe~DiKSVFEAFG----~I----~~C~LAr~pt~~~HkGyGfiEy  259 (544)
T KOG0124|consen  194 PQAQPIIDMVQEEAK------KFNRIYVASVHPDLSETDIKSVFEAFG----EI----VKCQLARAPTGRGHKGYGFIEY  259 (544)
T ss_pred             cccchHHHHHHHHHH------hhheEEeeecCCCccHHHHHHHHHhhc----ce----eeEEeeccCCCCCccceeeEEe
Confidence             10000000001112      235699999999999999999999999    44    56899999865 5899999999


Q ss_pred             CCHHHHHHHHH-hCCcccCCEEEEEEec
Q psy16116        495 EKEEEADKALS-KHKESIGIRYIELFRS  521 (612)
Q Consensus       495 ~s~edA~kAL~-~~~~~iggR~IeV~~a  521 (612)
                      .+......|+. +|-..+||.+++|-++
T Consensus       260 ~n~qs~~eAiasMNlFDLGGQyLRVGk~  287 (544)
T KOG0124|consen  260 NNLQSQSEAIASMNLFDLGGQYLRVGKC  287 (544)
T ss_pred             ccccchHHHhhhcchhhcccceEecccc
Confidence            99999999995 8999999999999886

>KOG0147|consensus

Probab=99.66  E-value=2.2e-16  Score=171.52  Aligned_cols=166  Identities=19%  Similarity=0.181  Sum_probs=132.0

Q ss_pred             ecCCCHHHHHhhHhhcccccCeeeEEEeeCCC-CCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccCccchhhcc
Q psy16116        344 VQNIWLSLLLNTIPGYEQVLGLGGVALCLSAF-GRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGEDFINVA  422 (612)
Q Consensus       344 V~nLp~~~~e~~fkeff~~~~v~~V~ii~d~~-GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~~~e~~~~~  422 (612)
                      ...++..++++||+.++.   +.+|++|.|+. ++++|.|||+|.+.+.+-.||.+.|+.+.|-+|.|..+..+.-....
T Consensus       188 a~r~~pRdL~efFs~~gk---VrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~pv~vq~sEaeknr~a~  264 (549)
T KOG0147|consen  188 ARRNPPRDLEEFFSIVGK---VRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVPVIVQLSEAEKNRAAN  264 (549)
T ss_pred             hhcCCchhHHHHHHhhcC---cceeEeeccccchhhcceeEEEEecccchhhHhhhcCCcccCceeEecccHHHHHHHHh
Confidence            345566777888877665   88999999975 78999999999999999999999999999999999776544322111


Q ss_pred             CCCCcchhhhccCCcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHH
Q psy16116        423 GGNNNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEAD  501 (612)
Q Consensus       423 g~~~~e~~~~~~~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~  501 (612)
                      .+.....+.+.  ..-..++|+||.++.++++|+..|+.||        .++.|.+.+|. +|+++|||||+|.+.++|+
T Consensus       265 ~s~a~~~k~~~--~p~~rl~vgnLHfNite~~lr~ifepfg--------~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar  334 (549)
T KOG0147|consen  265 ASPALQGKGFT--GPMRRLYVGNLHFNITEDMLRGIFEPFG--------KIENVQLTKDSETGRSKGFGFITFVNKEDAR  334 (549)
T ss_pred             ccccccccccc--cchhhhhhcccccCchHHHHhhhccCcc--------cceeeeeccccccccccCcceEEEecHHHHH
Confidence            11110111111  1112299999999999999999999999        56889999987 9999999999999999999


Q ss_pred             HHHH-hCCcccCCEEEEEEecc
Q psy16116        502 KALS-KHKESIGIRYIELFRST  522 (612)
Q Consensus       502 kAL~-~~~~~iggR~IeV~~as  522 (612)
                      +|++ +|+-+|-||.|.|...+
T Consensus       335 ~a~e~lngfelAGr~ikV~~v~  356 (549)
T KOG0147|consen  335 KALEQLNGFELAGRLIKVSVVT  356 (549)
T ss_pred             HHHHHhccceecCceEEEEEee
Confidence            9986 79999999999998764

>KOG0110|consensus

Probab=99.64  E-value=8.1e-16  Score=170.92  Aligned_cols=172  Identities=20%  Similarity=0.210  Sum_probs=134.8

Q ss_pred             ceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCC----CcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCc
Q psy16116        342 PLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGR----RNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANG  415 (612)
Q Consensus       342 vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~Gr----srG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~  415 (612)
                      +|+.||.|+++.+.+...|.. +.+.++.|.+.++++    |.|||||+|.+.++|++|++ ++++.|+|+.|+|..+..
T Consensus       518 lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~  597 (725)
T KOG0110|consen  518 LFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISEN  597 (725)
T ss_pred             hhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccC
Confidence            779999999998888876665 558888887777664    56999999999999999997 678999999999987762


Q ss_pred             cchhhccCCCCcchhhhccCCcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeC-CCCCceeEEEEEe
Q psy16116        416 EDFINVAGGNNNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKK-PDGKATGDAFVLF  494 (612)
Q Consensus       416 ~e~~~~~g~~~~e~~~~~~~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d-~~GrskG~AFV~F  494 (612)
                      ..-... +   .+   .........|.||||||.++..+|+++|..||        .+.+|+|+.. ..+-.+|||||+|
T Consensus       598 k~~~~~-g---K~---~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFG--------qlksvRlPKK~~k~a~rGF~Fv~f  662 (725)
T KOG0110|consen  598 KPASTV-G---KK---KSKKKKGTKILVRNIPFEATKREVRKLFTAFG--------QLKSVRLPKKIGKGAHRGFGFVDF  662 (725)
T ss_pred             cccccc-c---cc---cccccccceeeeeccchHHHHHHHHHHHhccc--------ceeeeccchhhcchhhccceeeec
Confidence            211110 0   00   01112346799999999999999999999999        4567999977 3556799999999


Q ss_pred             CCHHHHHHHHH-hCCcccCCEEEEEEecchHHHHH
Q psy16116        495 EKEEEADKALS-KHKESIGIRYIELFRSTTAEVQQ  528 (612)
Q Consensus       495 ~s~edA~kAL~-~~~~~iggR~IeV~~as~~e~~~  528 (612)
                      -++.+|.+|+. +....+-||.+-+.++.......
T Consensus       663 ~t~~ea~nA~~al~STHlyGRrLVLEwA~~d~~~e  697 (725)
T KOG0110|consen  663 LTPREAKNAFDALGSTHLYGRRLVLEWAKSDNTME  697 (725)
T ss_pred             cCcHHHHHHHHhhcccceechhhheehhccchHHH
Confidence            99999999995 67778888988888886554433

>KOG0110|consensus

Probab=99.63  E-value=1.6e-15  Score=168.60  Aligned_cols=223  Identities=20%  Similarity=0.198  Sum_probs=150.7

Q ss_pred             CcccceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCc
Q psy16116        338 VALCPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANG  415 (612)
Q Consensus       338 ~~l~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~  415 (612)
                      .+..++++|||..++.+++.+.|.. +.+..|  ++++.|.   -++|+|....+|++|++ +....+..-.+.+.++..
T Consensus       384 s~~vil~kNlpa~t~~~elt~~F~~fG~i~rv--llp~~G~---~aiv~fl~p~eAr~Afrklaysr~k~~plyle~aP~  458 (725)
T KOG0110|consen  384 SDTVILVKNLPAGTLSEELTEAFLRFGEIGRV--LLPPGGT---GAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWAPE  458 (725)
T ss_pred             hcceeeeccCccccccHHHHHHhhccccccee--ecCcccc---eeeeeecCccchHHHHHHhchhhhccCccccccChh
Confidence            3446789999999988888865543 444444  3343331   38999999999999997 444444444443333322


Q ss_pred             cchh--------h-----ccCCCCcch-----------hh------h---ccCCcc-cEEEEeCCCCCCCHHHHHHHHhc
Q psy16116        416 EDFI--------N-----VAGGNNNEA-----------QA------F---LTRGAQ-VIIRMRGLPYECTAKQVIDFFEA  461 (612)
Q Consensus       416 ~e~~--------~-----~~g~~~~e~-----------~~------~---~~~~~~-~~VfV~nLP~s~te~dLrefF~~  461 (612)
                      +-+.        .     .......+.           ++      .   .+.... .+|||+||+|+++.+++...|+.
T Consensus       459 dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F~k  538 (725)
T KOG0110|consen  459 DVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDLFSK  538 (725)
T ss_pred             hhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHHHHh
Confidence            1111        0     000000000           00      0   001122 33999999999999999999999


Q ss_pred             CCCCccccccCceeEEEeeCCCCC----ceeEEEEEeCCHHHHHHHHH-hCCcccCCEEEEEEecchHHHHHHhhhhcCC
Q psy16116        462 GTENSCNVMDGEEGVLFVKKPDGK----ATGDAFVLFEKEEEADKALS-KHKESIGIRYIELFRSTTAEVQQVLNKTMEL  536 (612)
Q Consensus       462 ~Gi~~~~Ivd~v~~I~i~~d~~Gr----skG~AFV~F~s~edA~kAL~-~~~~~iggR~IeV~~as~~e~~~~~~~~~~~  536 (612)
                      .|        .+.+|.|.+.++++    |.|||||+|++.++|+.|++ ++|..++|+.|+|..+..+.       ..  
T Consensus       539 ~G--------~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~-------~~--  601 (725)
T KOG0110|consen  539 QG--------TVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENKP-------AS--  601 (725)
T ss_pred             cC--------eEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCcc-------cc--
Confidence            99        34568887766654    55999999999999999997 68999999999999875110       00  


Q ss_pred             CCCCCCCCCCCCCCCcccccccccCCCCCCCCcccccCCCcccEEEEcCCCccCCHHHHHHhhccCCcEeEeeCCC
Q psy16116        537 PKNNSLTSSNNGLSAQQPMLSHLAQVPVPYLPQHIITSGTRKDCIRLRGLPYEALCILMDIFFVGQQDSFVHKVPK  612 (612)
Q Consensus       537 ~~~~~~~~e~~~~s~~~~~~~~~s~~p~~~~~~~~~~~~~~~~~VfVrNLPf~vTeeDLkefFs~~gdI~~~kip~  612 (612)
                      .      .+ .             ..+          .....+.|.||||||.++..+|+++|..||.+..+.|||
T Consensus       602 ~------~g-K-------------~~~----------~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPK  647 (725)
T KOG0110|consen  602 T------VG-K-------------KKS----------KKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPK  647 (725)
T ss_pred             c------cc-c-------------ccc----------cccccceeeeeccchHHHHHHHHHHHhcccceeeeccch
Confidence            0      00 0             000          011346899999999999999999999999999999997

>KOG0145|consensus

Probab=99.53  E-value=1.1e-13  Score=138.91  Aligned_cols=170  Identities=18%  Similarity=0.184  Sum_probs=123.1

Q ss_pred             ceecCCCH----HHHHhhHhhcccccCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCc--eEEEEeccC
Q psy16116        342 PLVQNIWL----SLLLNTIPGYEQVLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDK--RYIEVTKAN  414 (612)
Q Consensus       342 vlV~nLp~----~~~e~~fkeff~~~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~Igg--R~IeV~~s~  414 (612)
                      ++|.+||.    .++|+.|+.|+.+  +.+-.++..-+|-+||.|||.|...++|+.|++ +|++.=-|  ..|.|..++
T Consensus       130 LYvSGlPktMtqkelE~iFs~fGrI--ItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFan  207 (360)
T KOG0145|consen  130 LYVSGLPKTMTQKELEQIFSPFGRI--ITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFAN  207 (360)
T ss_pred             eEEecCCccchHHHHHHHHHHhhhh--hhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecC
Confidence            44555555    5667777777653  233333334479999999999999999999997 77765444  348886664


Q ss_pred             ccchh--------------hccCC-CCcch---------------hhhc-----------------cCCcccEEEEeCCC
Q psy16116        415 GEDFI--------------NVAGG-NNNEA---------------QAFL-----------------TRGAQVIIRMRGLP  447 (612)
Q Consensus       415 ~~e~~--------------~~~g~-~~~e~---------------~~~~-----------------~~~~~~~VfV~nLP  447 (612)
                      ...-.              +..++ .....               ..|.                 ..+.+.||||-||.
T Consensus       208 nPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvYNLs  287 (360)
T KOG0145|consen  208 NPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVYNLS  287 (360)
T ss_pred             CcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEEEEecC
Confidence            42100              00000 00000               0010                 12468999999999


Q ss_pred             CCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCC-CCceeEEEEEeCCHHHHHHHHH-hCCcccCCEEEEEEec
Q psy16116        448 YECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPD-GKATGDAFVLFEKEEEADKALS-KHKESIGIRYIELFRS  521 (612)
Q Consensus       448 ~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~-GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~IeV~~a  521 (612)
                      .+++|.-|-++|..||        .+..|+|++|.+ .++||||||.+.+.++|..||. +||..+++|.+.|.--
T Consensus       288 pd~de~~LWQlFgpFG--------Av~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFK  355 (360)
T KOG0145|consen  288 PDADESILWQLFGPFG--------AVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFK  355 (360)
T ss_pred             CCchHhHHHHHhCccc--------ceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEe
Confidence            9999999999999999        456799999984 8999999999999999999995 8999999999998653

>PLN03134 glycine-rich RNA-binding protein 4; Provisional

Probab=99.52  E-value=6.6e-14  Score=132.18  Aligned_cols=79  Identities=19%  Similarity=0.230  Sum_probs=72.2

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIR  514 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR  514 (612)
                      ...+|||+|||++++|+||+++|++||        .+..++|+.|. +|+++|||||+|++.++|++||+ +|+..|+||
T Consensus        33 ~~~~lfVgnL~~~~te~~L~~~F~~~G--------~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr  104 (144)
T PLN03134         33 MSTKLFIGGLSWGTDDASLRDAFAHFG--------DVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGR  104 (144)
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHhcCC--------CeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence            456799999999999999999999999        45679999887 79999999999999999999996 799999999


Q ss_pred             EEEEEecch
Q psy16116        515 YIELFRSTT  523 (612)
Q Consensus       515 ~IeV~~as~  523 (612)
                      .|.|..+..
T Consensus       105 ~l~V~~a~~  113 (144)
T PLN03134        105 HIRVNPAND  113 (144)
T ss_pred             EEEEEeCCc
Confidence            999998753

>PF00076 RRM_1: RNA recognition motif

Probab=99.48  E-value=1.7e-13  Score=110.59  Aligned_cols=69  Identities=35%  Similarity=0.504  Sum_probs=64.5

Q ss_pred             EEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEEEE
Q psy16116        441 IRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRYIE  517 (612)
Q Consensus       441 VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~Ie  517 (612)
                      |||+|||+++++++|+++|+.+|        .+..+.+..+.+|+++|+|||+|.+.++|++|++ +++..++||.|+
T Consensus         1 l~v~nlp~~~t~~~l~~~f~~~g--------~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir   70 (70)
T PF00076_consen    1 LYVGNLPPDVTEEELRDFFSQFG--------KIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR   70 (70)
T ss_dssp             EEEESETTTSSHHHHHHHHHTTS--------TEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred             cEEcCCCCcCCHHHHHHHHHHhh--------hcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence            79999999999999999999999        4567899888889999999999999999999997 899999999875

(a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....

>KOG0109|consensus

Probab=99.47  E-value=8.3e-14  Score=141.79  Aligned_cols=143  Identities=16%  Similarity=0.151  Sum_probs=119.4

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCccch
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGEDF  418 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~e~  418 (612)
                      .+||+|||.+..+..++.+|+. +.+.++.|+++       ||||..++...++.|+. +|+..|+|..|.|..+..+  
T Consensus         4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN-------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK--   74 (346)
T KOG0109|consen    4 KLFIGNLPREATEQELRSLFEQYGKVLECDIVKN-------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK--   74 (346)
T ss_pred             chhccCCCcccchHHHHHHHHhhCceEeeeeecc-------cceEEeecccccHHHHhhcccceecceEEEEEecccc--
Confidence            3567888887777777776665 55888999875       99999999999999998 8999999999999877543  


Q ss_pred             hhccCCCCcchhhhccCCcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHH
Q psy16116        419 INVAGGNNNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEE  498 (612)
Q Consensus       419 ~~~~g~~~~e~~~~~~~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~e  498 (612)
                                      ...+.+++|+||.+.|+.++|+..|+++|    .|    .+..|+       ++|+||.|+-.+
T Consensus        75 ----------------sk~stkl~vgNis~tctn~ElRa~fe~yg----pv----iecdiv-------kdy~fvh~d~~e  123 (346)
T KOG0109|consen   75 ----------------SKASTKLHVGNISPTCTNQELRAKFEKYG----PV----IECDIV-------KDYAFVHFDRAE  123 (346)
T ss_pred             ----------------CCCccccccCCCCccccCHHHhhhhcccC----Cc----eeeeee-------cceeEEEEeecc
Confidence                            01234699999999999999999999999    23    346665       469999999999


Q ss_pred             HHHHHHH-hCCcccCCEEEEEEecch
Q psy16116        499 EADKALS-KHKESIGIRYIELFRSTT  523 (612)
Q Consensus       499 dA~kAL~-~~~~~iggR~IeV~~as~  523 (612)
                      ||..|++ +|+.++.|+.+.|..++.
T Consensus       124 da~~air~l~~~~~~gk~m~vq~sts  149 (346)
T KOG0109|consen  124 DAVEAIRGLDNTEFQGKRMHVQLSTS  149 (346)
T ss_pred             chHHHHhcccccccccceeeeeeecc
Confidence            9999995 899999999999998753

>PF14259 RRM_6: RNA recognition motif (a

Probab=99.45  E-value=4.2e-13  Score=109.67  Aligned_cols=69  Identities=32%  Similarity=0.457  Sum_probs=61.8

Q ss_pred             EEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHHh-CCcccCCEEEE
Q psy16116        441 IRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALSK-HKESIGIRYIE  517 (612)
Q Consensus       441 VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~~-~~~~iggR~Ie  517 (612)
                      |+|+|||++++++||+++|+.+|        .+..+++..+++|+++|+|||+|.+.++|.+|++. ++..++||.|+
T Consensus         1 v~i~nlp~~~~~~~l~~~f~~~g--------~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~   70 (70)
T PF14259_consen    1 VYISNLPPSTTEEDLRNFFSRFG--------PVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR   70 (70)
T ss_dssp             EEEESSTTT--HHHHHHHCTTSS--------BEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred             CEEeCCCCCCCHHHHHHHHHhcC--------CcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence            79999999999999999999999        45789999988899999999999999999999985 67999999885

k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....

>KOG4205|consensus

Probab=99.42  E-value=1.7e-13  Score=143.87  Aligned_cols=122  Identities=21%  Similarity=0.287  Sum_probs=99.6

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHHhCCcccCCEE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALSKHKESIGIRY  515 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~~~~~~iggR~  515 (612)
                      +...+||++|+|+++++.|+++|+.+|    +|    ..+.+++|+ +||++||+||+|++.+.+.++|....+.|+||.
T Consensus         5 ~~~KlfiGgisw~ttee~Lr~yf~~~G----ev----~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~   76 (311)
T KOG4205|consen    5 ESGKLFIGGLSWETTEESLREYFSQFG----EV----TDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRS   76 (311)
T ss_pred             CCcceeecCcCccccHHHHHHHhcccC----ce----eeEEEeccCCCCCcccccceecCCCcchheeecccccccCCcc
Confidence            346799999999999999999999999    44    458888887 799999999999999999999999999999999


Q ss_pred             EEEEecchHHHHHHhhhhcCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCcccccCCCcccEEEEcCCCccCCHHHH
Q psy16116        516 IELFRSTTAEVQQVLNKTMELPKNNSLTSSNNGLSAQQPMLSHLAQVPVPYLPQHIITSGTRKDCIRLRGLPYEALCILM  595 (612)
Q Consensus       516 IeV~~as~~e~~~~~~~~~~~~~~~~~~~e~~~~s~~~~~~~~~s~~p~~~~~~~~~~~~~~~~~VfVrNLPf~vTeeDL  595 (612)
                      |++.++...+...              ..               .+             .....+|||++||.+++++++
T Consensus        77 ve~k~av~r~~~~--------------~~---------------~~-------------~~~tkkiFvGG~~~~~~e~~~  114 (311)
T KOG4205|consen   77 VEPKRAVSREDQT--------------KV---------------GR-------------HLRTKKIFVGGLPPDTTEEDF  114 (311)
T ss_pred             ccceeccCccccc--------------cc---------------cc-------------ccceeEEEecCcCCCCchHHH
Confidence            9998775433110              00               00             013458999999999999999


Q ss_pred             HHhhccCCcEeEe
Q psy16116        596 DIFFVGQQDSFVH  608 (612)
Q Consensus       596 kefFs~~gdI~~~  608 (612)
                      +++|..|+.|.-.
T Consensus       115 r~yfe~~g~v~~~  127 (311)
T KOG4205|consen  115 KDYFEQFGKVADV  127 (311)
T ss_pred             hhhhhccceeEee
Confidence            9999999855433

>KOG4307|consensus

Probab=99.37  E-value=2.2e-12  Score=142.98  Aligned_cols=154  Identities=14%  Similarity=0.163  Sum_probs=109.5

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCc-eeEEEEEeCCHHHHHHHHHhCCcccCCEE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKA-TGDAFVLFEKEEEADKALSKHKESIGIRY  515 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~Grs-kG~AFV~F~s~edA~kAL~~~~~~iggR~  515 (612)
                      +.+++.+++.+|++++.|+++||....         +..+.|..+.-+++ +|-++|+|....++.+|+..+...+-.|+
T Consensus       310 d~~y~~~~gm~fn~~~nd~rkfF~g~~---------~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~rn~~~~~~R~  380 (944)
T KOG4307|consen  310 DKYYNNYKGMEFNNDFNDGRKFFPGRN---------AQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTRNPSDDVNRP  380 (944)
T ss_pred             hhheeeecccccccccchhhhhcCccc---------ccccchhhhhcCCCcCCceEEEecCcchHHHHHhcCchhhhhcc
Confidence            468899999999999999999998765         24567777775554 99999999999999999999999999999


Q ss_pred             EEEEecchHHHHHHhhhhcCCCCCCCCCCCCCCC----CCcccccccccCCCCCCCCcccccCCCcccEEEEcCCCccCC
Q psy16116        516 IELFRSTTAEVQQVLNKTMELPKNNSLTSSNNGL----SAQQPMLSHLAQVPVPYLPQHIITSGTRKDCIRLRGLPYEAL  591 (612)
Q Consensus       516 IeV~~as~~e~~~~~~~~~~~~~~~~~~~e~~~~----s~~~~~~~~~s~~p~~~~~~~~~~~~~~~~~VfVrNLPf~vT  591 (612)
                      |+|.+....++..+-++....+..    ...+..    ...+++..     +    .+.......-..||||..||+.++
T Consensus       381 ~q~~P~g~~~~~~a~~~~~~~~~~----~~~~~hg~p~~~pr~~~~-----~----gq~vp~P~~ag~~lyv~~lP~~t~  447 (944)
T KOG4307|consen  381 FQTGPPGNLGRNGAPPFQAGVPPP----VIQNNHGRPIAPPRAMVR-----P----GQNVPFPGGAGGALYVFQLPVMTP  447 (944)
T ss_pred             eeecCCCccccccCccccccCCCC----cccccCCCCCCCcccccC-----C----CCCCCCCCCccceEEeccCCcccc
Confidence            999999877765444433222210    111110    11111110     0    011112245678999999999999


Q ss_pred             HHHHHHhhccC---Cc-EeEeeCCC
Q psy16116        592 CILMDIFFVGQ---QD-SFVHKVPK  612 (612)
Q Consensus       592 eeDLkefFs~~---gd-I~~~kip~  612 (612)
                      +.++.++|++.   .| |.+...|+
T Consensus       448 ~~~~v~~f~~~~~Ved~I~lt~~P~  472 (944)
T KOG4307|consen  448 IVPPVNKFMGAAAVEDFIELTRLPT  472 (944)
T ss_pred             ccchhhhhhhhhhhhheeEeccCCc
Confidence            99999999985   45 77776664

>KOG0149|consensus

Probab=99.36  E-value=8.6e-13  Score=131.31  Aligned_cols=77  Identities=21%  Similarity=0.309  Sum_probs=68.8

Q ss_pred             ccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHHhCCcccCCEEE
Q psy16116        438 QVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALSKHKESIGIRYI  516 (612)
Q Consensus       438 ~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~~~~~~iggR~I  516 (612)
                      -.+|||+||+|.+..++|+++|+.||    +|+    ++.|+.|+ +||+||||||+|++.|.|.+|++--+-.|+||+.
T Consensus        12 ~TKifVggL~w~T~~~~l~~yFeqfG----eI~----eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~a   83 (247)
T KOG0149|consen   12 FTKIFVGGLAWETHKETLRRYFEQFG----EIV----EAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKA   83 (247)
T ss_pred             EEEEEEcCcccccchHHHHHHHHHhC----ceE----EEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCccccccc
Confidence            35699999999999999999999999    554    47777776 8999999999999999999999988999999998


Q ss_pred             EEEecc
Q psy16116        517 ELFRST  522 (612)
Q Consensus       517 eV~~as  522 (612)
                      .+..++
T Consensus        84 NcnlA~   89 (247)
T KOG0149|consen   84 NCNLAS   89 (247)
T ss_pred             ccchhh
Confidence            887665

>KOG4212|consensus

Probab=99.36  E-value=8e-12  Score=132.82  Aligned_cols=172  Identities=20%  Similarity=0.271  Sum_probs=136.3

Q ss_pred             cceecCCCHHHHHhhHhhcccc--cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCccc
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV--LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGED  417 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~--~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~e  417 (612)
                      .+||.|+||+.-..+|++++..  +.+.-|.++.|..|++||+|.|||+++|.++||++ ++++.+.||.+.|+....++
T Consensus        46 ~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~d~q  125 (608)
T KOG4212|consen   46 SVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDHDEQ  125 (608)
T ss_pred             eEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccCchh
Confidence            4899999999999999987753  66888999999999999999999999999999997 78889999999997765432


Q ss_pred             hhh---c--cC------------------------CC-----Ccch--------------------h---------hhc-
Q psy16116        418 FIN---V--AG------------------------GN-----NNEA--------------------Q---------AFL-  433 (612)
Q Consensus       418 ~~~---~--~g------------------------~~-----~~e~--------------------~---------~~~-  433 (612)
                      -.+   .  .+                        +.     +.+.                    +         .|. 
T Consensus       126 ~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~Flr  205 (608)
T KOG4212|consen  126 RDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSASFLR  205 (608)
T ss_pred             hhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchhhhhh
Confidence            111   0  00                        00     0000                    0         000 


Q ss_pred             -----cCCcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHHh-C
Q psy16116        434 -----TRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALSK-H  507 (612)
Q Consensus       434 -----~~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~~-~  507 (612)
                           .......+||.||.|.+....|++.|.-.|        .+++|.+-.|+.|.++|||.+++..+-++-.||.+ +
T Consensus       206 ~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAG--------kv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~  277 (608)
T KOG4212|consen  206 SLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAG--------KVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLD  277 (608)
T ss_pred             hccCCCCCccceeeeeccccccchHHHHHHhccce--------eeeeeceeeccccccCCeeEEEecchHHHHHHHHhhc
Confidence                 012456799999999999999999999888        56889999999999999999999999999999975 7


Q ss_pred             CcccCCEEEEEEe
Q psy16116        508 KESIGIRYIELFR  520 (612)
Q Consensus       508 ~~~iggR~IeV~~  520 (612)
                      +.-++.|...+..
T Consensus       278 ~~g~~~~~~~~Rl  290 (608)
T KOG4212|consen  278 RQGLFDRRMTVRL  290 (608)
T ss_pred             cCCCccccceeec
Confidence            7777777766655

>PLN03120 nucleic acid binding protein; Provisional

Probab=99.36  E-value=2.3e-12  Score=131.52  Aligned_cols=75  Identities=16%  Similarity=0.232  Sum_probs=68.4

Q ss_pred             ccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCcccCCEEEE
Q psy16116        438 QVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALSKHKESIGIRYIE  517 (612)
Q Consensus       438 ~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~~~~~~iggR~Ie  517 (612)
                      .++|||+|||++++|+||++||+.||        .++.|+|+.|..  .+|||||+|.++++|++||.+++..|+||.|+
T Consensus         4 ~rtVfVgNLs~~tTE~dLrefFS~~G--------~I~~V~I~~d~~--~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~   73 (260)
T PLN03120          4 VRTVKVSNVSLKATERDIKEFFSFSG--------DIEYVEMQSENE--RSQIAYVTFKDPQGAETALLLSGATIVDQSVT   73 (260)
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcC--------CeEEEEEeecCC--CCCEEEEEeCcHHHHHHHHHhcCCeeCCceEE
Confidence            36799999999999999999999999        557799987753  57999999999999999999999999999999


Q ss_pred             EEecc
Q psy16116        518 LFRST  522 (612)
Q Consensus       518 V~~as  522 (612)
                      |..+.
T Consensus        74 Vt~a~   78 (260)
T PLN03120         74 ITPAE   78 (260)
T ss_pred             EEecc
Confidence            99864

>KOG0131|consensus

Probab=99.35  E-value=1.1e-12  Score=126.16  Aligned_cols=118  Identities=17%  Similarity=0.134  Sum_probs=100.0

Q ss_pred             CCcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccC
Q psy16116        435 RGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIG  512 (612)
Q Consensus       435 ~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~ig  512 (612)
                      +..+.+|||+||+..++++-|.++|-..|    .|+    .+++++|+ +...+|||||+|.++|||+-|++ ++.-.+-
T Consensus         6 rnqd~tiyvgnld~kvs~~~l~EL~iqag----pVv----~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLY   77 (203)
T KOG0131|consen    6 RNQDATLYVGNLDEKVSEELLYELFIQAG----PVV----NLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLY   77 (203)
T ss_pred             cCCCceEEEecCCHHHHHHHHHHHHHhcC----cee----eeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhc
Confidence            34567899999999999999999999999    454    59999998 77899999999999999999998 6888999


Q ss_pred             CEEEEEEecchHHHHHHhhhhcCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCcccccCCCcccEEEEcCCCccCCH
Q psy16116        513 IRYIELFRSTTAEVQQVLNKTMELPKNNSLTSSNNGLSAQQPMLSHLAQVPVPYLPQHIITSGTRKDCIRLRGLPYEALC  592 (612)
Q Consensus       513 gR~IeV~~as~~e~~~~~~~~~~~~~~~~~~~e~~~~s~~~~~~~~~s~~p~~~~~~~~~~~~~~~~~VfVrNLPf~vTe  592 (612)
                      ||.|+|.+++...        .                                       +...+..+||+||.+.++|
T Consensus        78 grpIrv~kas~~~--------~---------------------------------------nl~vganlfvgNLd~~vDe  110 (203)
T KOG0131|consen   78 GRPIRVNKASAHQ--------K---------------------------------------NLDVGANLFVGNLDPEVDE  110 (203)
T ss_pred             CceeEEEeccccc--------c---------------------------------------cccccccccccccCcchhH
Confidence            9999998876100        0                                       0113367999999999999


Q ss_pred             HHHHHhhccCCcEeE
Q psy16116        593 ILMDIFFVGQQDSFV  607 (612)
Q Consensus       593 eDLkefFs~~gdI~~  607 (612)
                      .-|...|+.||.+..
T Consensus       111 ~~L~dtFsafG~l~~  125 (203)
T KOG0131|consen  111 KLLYDTFSAFGVLIS  125 (203)
T ss_pred             HHHHHHHHhcccccc
Confidence            999999999987654

>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]

Probab=99.35  E-value=7.8e-12  Score=122.47  Aligned_cols=141  Identities=20%  Similarity=0.241  Sum_probs=103.1

Q ss_pred             ccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEE
Q psy16116        438 QVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIRY  515 (612)
Q Consensus       438 ~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~  515 (612)
                      ..+|||+|||+++++++|+++|+.+|        .+..|++..|+ +|+++|||||+|.+.+++.+|++ +++..+.||.
T Consensus       115 ~~~l~v~nL~~~~~~~~l~~~F~~~g--------~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~  186 (306)
T COG0724         115 NNTLFVGNLPYDVTEEDLRELFKKFG--------PVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRP  186 (306)
T ss_pred             CceEEEeCCCCCCCHHHHHHHHHhcC--------ceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCce
Confidence            47899999999999999999999999        45679999996 89999999999999999999997 6889999999


Q ss_pred             EEEEecchHHHHHHhhhhcCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCcccccCCCcccEEEEcCCCccCCHHHH
Q psy16116        516 IELFRSTTAEVQQVLNKTMELPKNNSLTSSNNGLSAQQPMLSHLAQVPVPYLPQHIITSGTRKDCIRLRGLPYEALCILM  595 (612)
Q Consensus       516 IeV~~as~~e~~~~~~~~~~~~~~~~~~~e~~~~s~~~~~~~~~s~~p~~~~~~~~~~~~~~~~~VfVrNLPf~vTeeDL  595 (612)
                      |.|.....    ....+......   ...  ....               ...............+++.|+++.++++++
T Consensus       187 ~~v~~~~~----~~~~~~~~~~~---~~~--~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (306)
T COG0724         187 LRVQKAQP----ASQPRSELSNN---LDA--SFAK---------------KLSRGKALLLEKSDNLYVGNLPLKTAEEEL  242 (306)
T ss_pred             eEeecccc----ccccccccccc---cch--hhhc---------------cccccccccccccceeeccccccccchhHH
Confidence            99998653    00000000000   000  0000               000000011235678999999999999999


Q ss_pred             HHhhccCCcEeEeeC
Q psy16116        596 DIFFVGQQDSFVHKV  610 (612)
Q Consensus       596 kefFs~~gdI~~~ki  610 (612)
                      ...|..++++....+
T Consensus       243 ~~~~~~~~~~~~~~~  257 (306)
T COG0724         243 ADLFKSRGDIVRASL  257 (306)
T ss_pred             HHhccccccceeeec
Confidence            999999988855443

>KOG0125|consensus

Probab=99.34  E-value=1.9e-12  Score=133.84  Aligned_cols=79  Identities=24%  Similarity=0.350  Sum_probs=71.9

Q ss_pred             ccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEEE
Q psy16116        438 QVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRYI  516 (612)
Q Consensus       438 ~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~I  516 (612)
                      ..+|+|.|+||...|.||+..|++||    .|+|    |+|+.++.| |||||||+|++.+||++|-+ +|+..+.||+|
T Consensus        96 pkRLhVSNIPFrFRdpDL~aMF~kfG----~Vld----VEIIfNERG-SKGFGFVTmen~~dadRARa~LHgt~VEGRkI  166 (376)
T KOG0125|consen   96 PKRLHVSNIPFRFRDPDLRAMFEKFG----KVLD----VEIIFNERG-SKGFGFVTMENPADADRARAELHGTVVEGRKI  166 (376)
T ss_pred             CceeEeecCCccccCccHHHHHHhhC----ceee----EEEEeccCC-CCccceEEecChhhHHHHHHHhhcceeeceEE
Confidence            35699999999999999999999999    5665    999998877 89999999999999999995 79999999999


Q ss_pred             EEEecchHH
Q psy16116        517 ELFRSTTAE  525 (612)
Q Consensus       517 eV~~as~~e  525 (612)
                      ||..++..-
T Consensus       167 EVn~ATarV  175 (376)
T KOG0125|consen  167 EVNNATARV  175 (376)
T ss_pred             EEeccchhh
Confidence            999987653

>KOG0144|consensus

Probab=99.31  E-value=3.2e-12  Score=135.81  Aligned_cols=115  Identities=14%  Similarity=0.176  Sum_probs=92.8

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-h-CCcccCC
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-K-HKESIGI  513 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~-~~~~igg  513 (612)
                      +...+||+-+|..++|.|||++|++||        .+.+|.|++|+ +|.++|+|||.|.+.+||.+|+. + |...|-|
T Consensus        33 ~~vKlfVgqIprt~sE~dlr~lFe~yg--------~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG  104 (510)
T KOG0144|consen   33 SAVKLFVGQIPRTASEKDLRELFEKYG--------NVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPG  104 (510)
T ss_pred             hhhhheeccCCccccHHHHHHHHHHhC--------ceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCC
Confidence            446699999999999999999999999        45789999998 79999999999999999999995 5 4455543


Q ss_pred             --EEEEEEecchHHHHHHhhhhcCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCcccccCCCcccEEEEcCCCccCC
Q psy16116        514 --RYIELFRSTTAEVQQVLNKTMELPKNNSLTSSNNGLSAQQPMLSHLAQVPVPYLPQHIITSGTRKDCIRLRGLPYEAL  591 (612)
Q Consensus       514 --R~IeV~~as~~e~~~~~~~~~~~~~~~~~~~e~~~~s~~~~~~~~~s~~p~~~~~~~~~~~~~~~~~VfVrNLPf~vT  591 (612)
                        ..|.|+.++.+..                                  +.             ...++|||+-|+-.+|
T Consensus       105 ~~~pvqvk~Ad~E~e----------------------------------r~-------------~~e~KLFvg~lsK~~t  137 (510)
T KOG0144|consen  105 MHHPVQVKYADGERE----------------------------------RI-------------VEERKLFVGMLSKQCT  137 (510)
T ss_pred             CCcceeecccchhhh----------------------------------cc-------------ccchhhhhhhcccccc
Confidence              4577765542210                                  00             1345799999999999


Q ss_pred             HHHHHHhhccCCcEe
Q psy16116        592 CILMDIFFVGQQDSF  606 (612)
Q Consensus       592 eeDLkefFs~~gdI~  606 (612)
                      |.||+++|+.||.|.
T Consensus       138 e~evr~iFs~fG~Ie  152 (510)
T KOG0144|consen  138 ENEVREIFSRFGHIE  152 (510)
T ss_pred             HHHHHHHHHhhCccc
Confidence            999999999998554

>KOG0124|consensus

Probab=99.29  E-value=2.2e-12  Score=134.43  Aligned_cols=126  Identities=17%  Similarity=0.214  Sum_probs=102.7

Q ss_pred             cEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEEE
Q psy16116        439 VIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIRYI  516 (612)
Q Consensus       439 ~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~I  516 (612)
                      ++|||+.+.|...|+.||..|..||        .+++|.+..|+ +|+.||||||+|+-+|.|..|++ +|+..+|||.|
T Consensus       114 cRvYVGSIsfEl~EDtiR~AF~PFG--------PIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNi  185 (544)
T KOG0124|consen  114 CRVYVGSISFELREDTIRRAFDPFG--------PIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNI  185 (544)
T ss_pred             HheeeeeeEEEechHHHHhhccCCC--------CcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccc
Confidence            4699999999999999999999999        56889999998 89999999999999999999997 79999999999


Q ss_pred             EEEecch-HHHHHHhhhhcCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCcccccCCCcccEEEEcCCCccCCHHHH
Q psy16116        517 ELFRSTT-AEVQQVLNKTMELPKNNSLTSSNNGLSAQQPMLSHLAQVPVPYLPQHIITSGTRKDCIRLRGLPYEALCILM  595 (612)
Q Consensus       517 eV~~as~-~e~~~~~~~~~~~~~~~~~~~e~~~~s~~~~~~~~~s~~p~~~~~~~~~~~~~~~~~VfVrNLPf~vTeeDL  595 (612)
                      .|..-+. ......+....                                  +    .......|||..+..+.+++||
T Consensus       186 KVgrPsNmpQAQpiID~vq----------------------------------e----eAk~fnRiYVaSvHpDLSe~Di  227 (544)
T KOG0124|consen  186 KVGRPSNMPQAQPIIDMVQ----------------------------------E----EAKKFNRIYVASVHPDLSETDI  227 (544)
T ss_pred             cccCCCCCcccchHHHHHH----------------------------------H----HHHhhheEEeeecCCCccHHHH
Confidence            9964321 00000111000                                  0    0113457999999999999999


Q ss_pred             HHhhccCCcEeEeeC
Q psy16116        596 DIFFVGQQDSFVHKV  610 (612)
Q Consensus       596 kefFs~~gdI~~~ki  610 (612)
                      +..|+.||+|..|+.
T Consensus       228 KSVFEAFG~I~~C~L  242 (544)
T KOG0124|consen  228 KSVFEAFGEIVKCQL  242 (544)
T ss_pred             HHHHHhhcceeeEEe
Confidence            999999999999975

>PLN03121 nucleic acid binding protein; Provisional

Probab=99.29  E-value=9.5e-12  Score=125.44  Aligned_cols=76  Identities=21%  Similarity=0.235  Sum_probs=69.4

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCcccCCEEE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALSKHKESIGIRYI  516 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~~~~~~iggR~I  516 (612)
                      .+++|||+||++++|++||++||+.||        .++.|+|+.|  ++.+|||||+|.++++++.||.++|..|.++.|
T Consensus         4 ~g~TV~V~NLS~~tTE~dLrefFS~~G--------~I~~V~I~~D--~et~gfAfVtF~d~~aaetAllLnGa~l~d~~I   73 (243)
T PLN03121          4 GGYTAEVTNLSPKATEKDVYDFFSHCG--------AIEHVEIIRS--GEYACTAYVTFKDAYALETAVLLSGATIVDQRV   73 (243)
T ss_pred             CceEEEEecCCCCCCHHHHHHHHHhcC--------CeEEEEEecC--CCcceEEEEEECCHHHHHHHHhcCCCeeCCceE
Confidence            457899999999999999999999999        4577998876  567799999999999999999999999999999


Q ss_pred             EEEecc
Q psy16116        517 ELFRST  522 (612)
Q Consensus       517 eV~~as  522 (612)
                      .|....
T Consensus        74 ~It~~~   79 (243)
T PLN03121         74 CITRWG   79 (243)
T ss_pred             EEEeCc
Confidence            998865

>KOG0105|consensus

Probab=99.25  E-value=8.3e-11  Score=113.57  Aligned_cols=157  Identities=16%  Similarity=0.118  Sum_probs=104.3

Q ss_pred             cccceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCcc
Q psy16116        339 ALCPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGE  416 (612)
Q Consensus       339 ~l~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~  416 (612)
                      +.+++|+|||-+.-+.++.++|.. +.+.+|.+. ++.| .-+||||+|++..||+.|+. +++..++|-.++|.....-
T Consensus         6 ~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK-~r~g-~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprgg   83 (241)
T KOG0105|consen    6 SRRIYVGNLPGDIREKEIEDLFYKYGRIREIELK-NRPG-PPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGG   83 (241)
T ss_pred             cceEEecCCCcchhhccHHHHHhhhcceEEEEec-cCCC-CCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCC
Confidence            345566777766555555554443 347777763 3222 45799999999999999997 8999999999999665432


Q ss_pred             chhh-ccCC--------CCc-chhhhccCCcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCc
Q psy16116        417 DFIN-VAGG--------NNN-EAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKA  486 (612)
Q Consensus       417 e~~~-~~g~--------~~~-e~~~~~~~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~Grs  486 (612)
                      .... ..++        ... ......++...+.|.|+|||.+.+|+||++...+.|    .|.    -..+.+      
T Consensus        84 r~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaG----dvC----fadv~r------  149 (241)
T KOG0105|consen   84 RSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAG----DVC----FADVQR------  149 (241)
T ss_pred             CcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhC----Cee----eeeeec------
Confidence            1100 0000        000 000111234678899999999999999999999999    221    122222      


Q ss_pred             eeEEEEEeCCHHHHHHHHH-hCCccc
Q psy16116        487 TGDAFVLFEKEEEADKALS-KHKESI  511 (612)
Q Consensus       487 kG~AFV~F~s~edA~kAL~-~~~~~i  511 (612)
                      -|.+.|+|.+.||.+-|+. ++.+.+
T Consensus       150 Dg~GvV~~~r~eDMkYAvr~ld~~~~  175 (241)
T KOG0105|consen  150 DGVGVVEYLRKEDMKYAVRKLDDQKF  175 (241)
T ss_pred             ccceeeeeeehhhHHHHHHhhccccc
Confidence            2589999999999999996 454444

>KOG0146|consensus

Probab=99.25  E-value=2.2e-11  Score=122.97  Aligned_cols=77  Identities=16%  Similarity=0.213  Sum_probs=67.7

Q ss_pred             CcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCC
Q psy16116        436 GAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGI  513 (612)
Q Consensus       436 ~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~igg  513 (612)
                      .+++.|||-.||.+..+.||.+.|-.||    .|+    +.++..|+ ++.+|.||||.|++..+++.||. +||-.||-
T Consensus       283 PeGCNlFIYHLPQEFgDaEliQmF~PFG----hiv----SaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGM  354 (371)
T KOG0146|consen  283 PEGCNLFIYHLPQEFGDAELIQMFLPFG----HIV----SAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGM  354 (371)
T ss_pred             CCcceEEEEeCchhhccHHHHHHhcccc----cee----eeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhh
Confidence            3678999999999999999999999999    453    57777787 88999999999999999999995 89999997


Q ss_pred             EEEEEEe
Q psy16116        514 RYIELFR  520 (612)
Q Consensus       514 R~IeV~~  520 (612)
                      ++++|..
T Consensus       355 KRLKVQL  361 (371)
T KOG0146|consen  355 KRLKVQL  361 (371)
T ss_pred             hhhhhhh
Confidence            7776654

>smart00362 RRM_2 RNA recognition motif

Probab=99.23  E-value=4.8e-11  Score=94.60  Aligned_cols=70  Identities=31%  Similarity=0.437  Sum_probs=63.2

Q ss_pred             EEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEEEEE
Q psy16116        440 IIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRYIEL  518 (612)
Q Consensus       440 ~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~IeV  518 (612)
                      +|+|+|||..+++++|+++|+.+|        .+..+.+..+. |.++|+|||+|.+.++|++|++ +++..++|+.|+|
T Consensus         1 ~v~i~~l~~~~~~~~l~~~~~~~g--------~v~~~~~~~~~-~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v   71 (72)
T smart00362        1 TLFVGNLPPDVTEEDLKELFSKFG--------PIESVKIPKDT-GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV   71 (72)
T ss_pred             CEEEcCCCCcCCHHHHHHHHHhcC--------CEEEEEEecCC-CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence            389999999999999999999999        44568888776 8899999999999999999997 5889999999887

>KOG4212|consensus

Probab=99.19  E-value=2.3e-10  Score=121.89  Aligned_cols=84  Identities=23%  Similarity=0.276  Sum_probs=74.2

Q ss_pred             ccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEEE
Q psy16116        438 QVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRYI  516 (612)
Q Consensus       438 ~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~I  516 (612)
                      .+.+||.|+||++.|+|||++|++..       .+++-|.+..|.+||+||.|.|+|+++|.++||++ ++++.+.||.|
T Consensus        44 ~R~vfItNIpyd~rWqdLKdLvrekv-------Gev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l  116 (608)
T KOG4212|consen   44 DRSVFITNIPYDYRWQDLKDLVREKV-------GEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGREL  116 (608)
T ss_pred             cceEEEecCcchhhhHhHHHHHHHhc-------CceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceE
Confidence            35599999999999999999998533       26788999999999999999999999999999998 69999999999


Q ss_pred             EEEecchHHHHH
Q psy16116        517 ELFRSTTAEVQQ  528 (612)
Q Consensus       517 eV~~as~~e~~~  528 (612)
                      .|+....++..+
T Consensus       117 ~vKEd~d~q~~~  128 (608)
T KOG4212|consen  117 VVKEDHDEQRDQ  128 (608)
T ss_pred             EEeccCchhhhh
Confidence            999887665444

>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability

Probab=99.16  E-value=2.3e-10  Score=91.14  Aligned_cols=72  Identities=32%  Similarity=0.430  Sum_probs=65.3

Q ss_pred             EEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEEEEE
Q psy16116        440 IIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRYIEL  518 (612)
Q Consensus       440 ~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~IeV  518 (612)
                      +|+|+|||+.+++++|+++|+.+|        .+..+.+..+..++.+|+|||+|.+.++|..|++ +++..++|+.+.|
T Consensus         1 ~i~i~~l~~~~~~~~i~~~~~~~g--------~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v   72 (74)
T cd00590           1 TLFVGNLPPDVTEEDLRELFSKFG--------KVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRV   72 (74)
T ss_pred             CEEEeCCCCccCHHHHHHHHHhcC--------CEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence            389999999999999999999999        4567899888877889999999999999999997 5888899999988


Q ss_pred             E
Q psy16116        519 F  519 (612)
Q Consensus       519 ~  519 (612)
                      .
T Consensus        73 ~   73 (74)
T cd00590          73 E   73 (74)
T ss_pred             e
Confidence            5

This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).

>KOG0109|consensus

Probab=99.15  E-value=5.2e-11  Score=121.65  Aligned_cols=107  Identities=16%  Similarity=0.131  Sum_probs=92.1

Q ss_pred             EEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEEEEE
Q psy16116        440 IIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRYIEL  518 (612)
Q Consensus       440 ~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~IeV  518 (612)
                      .|||+|||-.+++.+|+.+|+.||    +    +.++.|++       -||||..+++..++.||. +|+..|+|..|.|
T Consensus         4 KLFIGNLp~~~~~~elr~lFe~yg----k----VlECDIvK-------NYgFVHiEdktaaedairNLhgYtLhg~nInV   68 (346)
T KOG0109|consen    4 KLFIGNLPREATEQELRSLFEQYG----K----VLECDIVK-------NYGFVHIEDKTAAEDAIRNLHGYTLHGVNINV   68 (346)
T ss_pred             chhccCCCcccchHHHHHHHHhhC----c----eEeeeeec-------ccceEEeecccccHHHHhhcccceecceEEEE
Confidence            499999999999999999999999    3    44577774       399999999999999997 8999999999999


Q ss_pred             EecchHHHHHHhhhhcCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCcccccCCCcccEEEEcCCCccCCHHHHHHh
Q psy16116        519 FRSTTAEVQQVLNKTMELPKNNSLTSSNNGLSAQQPMLSHLAQVPVPYLPQHIITSGTRKDCIRLRGLPYEALCILMDIF  598 (612)
Q Consensus       519 ~~as~~e~~~~~~~~~~~~~~~~~~~e~~~~s~~~~~~~~~s~~p~~~~~~~~~~~~~~~~~VfVrNLPf~vTeeDLkef  598 (612)
                      ..++.+                                                  ++..++|+|.||.+.||.++|++.
T Consensus        69 eaSksK--------------------------------------------------sk~stkl~vgNis~tctn~ElRa~   98 (346)
T KOG0109|consen   69 EASKSK--------------------------------------------------SKASTKLHVGNISPTCTNQELRAK   98 (346)
T ss_pred             Eecccc--------------------------------------------------CCCccccccCCCCccccCHHHhhh
Confidence            764321                                                  013467999999999999999999


Q ss_pred             hccCCcEeEeeCC
Q psy16116        599 FVGQQDSFVHKVP  611 (612)
Q Consensus       599 Fs~~gdI~~~kip  611 (612)
                      |..||.+.-|+|=
T Consensus        99 fe~ygpviecdiv  111 (346)
T KOG0109|consen   99 FEKYGPVIECDIV  111 (346)
T ss_pred             hcccCCceeeeee
Confidence            9999998888773

>smart00360 RRM RNA recognition motif

Probab=99.14  E-value=1.9e-10  Score=90.68  Aligned_cols=68  Identities=32%  Similarity=0.469  Sum_probs=61.1

Q ss_pred             EeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEEEEE
Q psy16116        443 MRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIRYIEL  518 (612)
Q Consensus       443 V~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~IeV  518 (612)
                      |+|||+++++++|+++|+.+|        .+..+.+..+. +++++|+|||+|.+.++|.+|++ +++..++|+.|.|
T Consensus         1 i~~l~~~~~~~~l~~~f~~~g--------~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v   70 (71)
T smart00360        1 VGNLPPDVTEEELRELFSKFG--------KIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV   70 (71)
T ss_pred             CCCCCcccCHHHHHHHHHhhC--------CEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence            579999999999999999999        44668888876 58999999999999999999996 6889999999887

>KOG0122|consensus

Probab=99.12  E-value=1.7e-10  Score=115.55  Aligned_cols=80  Identities=18%  Similarity=0.258  Sum_probs=72.8

Q ss_pred             CcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCC
Q psy16116        436 GAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGI  513 (612)
Q Consensus       436 ~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~igg  513 (612)
                      .+..+|+|.||+.+++|+||+++|..||        .+.+|.|.+|+ +|.+||||||.|.+.+||.+||+ +||.=+++
T Consensus       187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg--------~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~  258 (270)
T KOG0122|consen  187 DDEATVRVTNLSEDMREDDLEELFRPFG--------PITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDN  258 (270)
T ss_pred             CccceeEEecCccccChhHHHHHhhccC--------ccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccce
Confidence            4668899999999999999999999999        56789999997 89999999999999999999996 79998888


Q ss_pred             EEEEEEecch
Q psy16116        514 RYIELFRSTT  523 (612)
Q Consensus       514 R~IeV~~as~  523 (612)
                      --++|..+.+
T Consensus       259 LILrvEwskP  268 (270)
T KOG0122|consen  259 LILRVEWSKP  268 (270)
T ss_pred             EEEEEEecCC
Confidence            8889987754

>KOG0105|consensus

Probab=99.12  E-value=6.4e-10  Score=107.52  Aligned_cols=140  Identities=15%  Similarity=0.102  Sum_probs=95.9

Q ss_pred             ccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEEE
Q psy16116        438 QVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRYI  516 (612)
Q Consensus       438 ~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~I  516 (612)
                      .+.|+|+|||-++.+.||.++|.+||    .|+    .|.+-  ..-..-.||||+|++..||+.||. .|+..++|..+
T Consensus         6 ~~~iyvGNLP~diRekeieDlFyKyg----~i~----~ieLK--~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rL   75 (241)
T KOG0105|consen    6 SRRIYVGNLPGDIREKEIEDLFYKYG----RIR----EIELK--NRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRL   75 (241)
T ss_pred             cceEEecCCCcchhhccHHHHHhhhc----ceE----EEEec--cCCCCCCeeEEEecCccchhhhhhcccccccCcceE
Confidence            46799999999999999999999999    453    35542  222356899999999999999997 79999999999


Q ss_pred             EEEecchHHHHHHhhhhc-CCCCCCCCCCCCCCCCCcccccccccCCCCCCCCcccccCCCcccEEEEcCCCccCCHHHH
Q psy16116        517 ELFRSTTAEVQQVLNKTM-ELPKNNSLTSSNNGLSAQQPMLSHLAQVPVPYLPQHIITSGTRKDCIRLRGLPYEALCILM  595 (612)
Q Consensus       517 eV~~as~~e~~~~~~~~~-~~~~~~~~~~e~~~~s~~~~~~~~~s~~p~~~~~~~~~~~~~~~~~VfVrNLPf~vTeeDL  595 (612)
                      +|....--       +.. .+...+  ...+++  +. +..  ..+.|     .    +......|.|.+||.+.+.+||
T Consensus        76 RVEfprgg-------r~s~~~~G~y--~gggrg--Gg-g~g--g~rgp-----p----srrSe~RVvVsGLp~SgSWQDL  132 (241)
T KOG0105|consen   76 RVEFPRGG-------RSSSDRRGSY--SGGGRG--GG-GGG--GRRGP-----P----SRRSEYRVVVSGLPPSGSWQDL  132 (241)
T ss_pred             EEEeccCC-------Cccccccccc--CCCCCC--CC-CCC--cccCC-----c----ccccceeEEEecCCCCCchHHH
Confidence            99865311       110 000000  000010  00 000  01111     0    1124467999999999999999


Q ss_pred             HHhhccCCcEeEeeC
Q psy16116        596 DIFFVGQQDSFVHKV  610 (612)
Q Consensus       596 kefFs~~gdI~~~ki  610 (612)
                      +.+...-+|+.+..+
T Consensus       133 KDHmReaGdvCfadv  147 (241)
T KOG0105|consen  133 KDHMREAGDVCFADV  147 (241)
T ss_pred             HHHHHhhCCeeeeee
Confidence            999999999887665

>KOG0106|consensus

Probab=99.11  E-value=1.6e-10  Score=115.35  Aligned_cols=162  Identities=21%  Similarity=0.263  Sum_probs=111.7

Q ss_pred             cEeecCCCCCCCcccceecCCCHHHHHhhHhhcccccCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCc
Q psy16116        327 TVYTIPTPGNPVALCPLVQNIWLSLLLNTIPGYEQVLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDK  405 (612)
Q Consensus       327 tvfV~~l~~~~~~l~vlV~nLp~~~~e~~fkeff~~~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~Igg  405 (612)
                      .+||++++...++          .++|.||++++.   +.+|.|.       .||+||+|.+.-||+.|+- .++..|++
T Consensus         3 rv~vg~~~~~~~~----------~d~E~~f~~yg~---~~d~~mk-------~gf~fv~fed~rda~Dav~~l~~~~l~~   62 (216)
T KOG0106|consen    3 RVYIGRLPYRARE----------RDVERFFKGYGK---IPDADMK-------NGFGFVEFEDPRDADDAVHDLDGKELCG   62 (216)
T ss_pred             ceeecccCCccch----------hHHHHHHhhccc---cccceee-------cccceeccCchhhhhcccchhcCceecc
Confidence            4565555555444          777777777775   5566662       4799999999999999995 88888877


Q ss_pred             eEEEEeccCccchhh--ccCCCCcc-hhhhc-cCCcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeC
Q psy16116        406 RYIEVTKANGEDFIN--VAGGNNNE-AQAFL-TRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKK  481 (612)
Q Consensus       406 R~IeV~~s~~~e~~~--~~g~~~~e-~~~~~-~~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d  481 (612)
                      -.+.|.......-..  ..++.... ..... ..-..+.++|.+++-.+.++||.+.|..+|.    +    ....+   
T Consensus        63 e~~vve~~r~~~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~----~----~~~~~---  131 (216)
T KOG0106|consen   63 ERLVVEHARGKRRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGE----V----TYVDA---  131 (216)
T ss_pred             eeeeeecccccccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCC----C----chhhh---
Confidence            665554443221111  01110000 11111 1235688999999999999999999999992    1    11111   


Q ss_pred             CCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEEEEEEecch
Q psy16116        482 PDGKATGDAFVLFEKEEEADKALS-KHKESIGIRYIELFRSTT  523 (612)
Q Consensus       482 ~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~IeV~~as~  523 (612)
                          .++++||+|++++++.+|++ +++..+.++.|.+.....
T Consensus       132 ----~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~~~~  170 (216)
T KOG0106|consen  132 ----RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEKNSR  170 (216)
T ss_pred             ----hccccceeehhhhhhhhcchhccchhhcCceeeecccCc
Confidence                67899999999999999997 699999999999955543

>PLN03213 repressor of silencing 3; Provisional

Probab=99.08  E-value=4.4e-10  Score=121.17  Aligned_cols=80  Identities=16%  Similarity=0.189  Sum_probs=70.0

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCH--HHHHHHHH-hCCcccCC
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKE--EEADKALS-KHKESIGI  513 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~--edA~kAL~-~~~~~igg  513 (612)
                      ...+|||+||+|+++++||++.|..||        .+.+|.|+ ..+|  ||||||+|.+.  +++.+||+ +||..+.|
T Consensus         9 ~gMRIYVGNLSydVTEDDLravFSeFG--------sVkdVEIp-RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKG   77 (759)
T PLN03213          9 GGVRLHVGGLGESVGRDDLLKIFSPMG--------TVDAVEFV-RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKG   77 (759)
T ss_pred             cceEEEEeCCCCCCCHHHHHHHHHhcC--------CeeEEEEe-cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecC
Confidence            346799999999999999999999999        56789998 4467  89999999987  78999996 89999999


Q ss_pred             EEEEEEecchHHHH
Q psy16116        514 RYIELFRSTTAEVQ  527 (612)
Q Consensus       514 R~IeV~~as~~e~~  527 (612)
                      |.|+|..+.+.=+.
T Consensus        78 R~LKVNKAKP~YLe   91 (759)
T PLN03213         78 GRLRLEKAKEHYLA   91 (759)
T ss_pred             ceeEEeeccHHHHH
Confidence            99999999765433

>KOG0125|consensus

Probab=99.04  E-value=1.1e-09  Score=113.70  Aligned_cols=75  Identities=21%  Similarity=0.216  Sum_probs=63.4

Q ss_pred             cceecCCCHHHHHhhHhh-cccccCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCcc
Q psy16116        341 CPLVQNIWLSLLLNTIPG-YEQVLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGE  416 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fke-ff~~~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~  416 (612)
                      ++.|.||||.-=+-||+. |++.+.|.+|.||.+.+| |||||||+|++.+||++|-+ +|+..+.||.|||..++.+
T Consensus        98 RLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERG-SKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATar  174 (376)
T KOG0125|consen   98 RLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERG-SKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATAR  174 (376)
T ss_pred             eeEeecCCccccCccHHHHHHhhCceeeEEEEeccCC-CCccceEEecChhhHHHHHHHhhcceeeceEEEEeccchh
Confidence            677899999866666664 333356899999999887 99999999999999999996 8999999999999888764

>PLN03134 glycine-rich RNA-binding protein 4; Provisional

Probab=99.02  E-value=5.8e-10  Score=105.44  Aligned_cols=76  Identities=16%  Similarity=0.134  Sum_probs=60.6

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCcc
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGE  416 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~  416 (612)
                      +++|+||+++.++++|+++|.. +.+.+|+|+.++ +|+++|||||+|++.|+|++||+ +++..|+||.|+|..+..+
T Consensus        36 ~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~~~  114 (144)
T PLN03134         36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDR  114 (144)
T ss_pred             EEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCCcC
Confidence            3446666666666666665544 458899998886 58999999999999999999997 7999999999999877543

>KOG0113|consensus

Probab=99.01  E-value=8.5e-10  Score=113.23  Aligned_cols=80  Identities=20%  Similarity=0.223  Sum_probs=72.8

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIR  514 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR  514 (612)
                      .-.||||.-|+++++|.+|+..|+.||        .|+.|+|+.|. +|+++|||||+|+++-+...|.+ -++..|+||
T Consensus       100 Py~TLFv~RLnydT~EskLrreF~~YG--------~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgr  171 (335)
T KOG0113|consen  100 PYKTLFVARLNYDTSESKLRREFEKYG--------PIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGR  171 (335)
T ss_pred             ccceeeeeeccccccHHHHHHHHHhcC--------cceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCc
Confidence            346899999999999999999999999        56899999996 99999999999999999999997 599999999


Q ss_pred             EEEEEecchH
Q psy16116        515 YIELFRSTTA  524 (612)
Q Consensus       515 ~IeV~~as~~  524 (612)
                      .|-|..-.-.
T Consensus       172 ri~VDvERgR  181 (335)
T KOG0113|consen  172 RILVDVERGR  181 (335)
T ss_pred             EEEEEecccc
Confidence            9999875433

>PF14259 RRM_6: RNA recognition motif (a

Probab=99.01  E-value=5.9e-10  Score=90.99  Aligned_cols=68  Identities=22%  Similarity=0.189  Sum_probs=56.5

Q ss_pred             ceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHHhC-CCccCceEEE
Q psy16116        342 PLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRH-KHHIDKRYIE  409 (612)
Q Consensus       342 vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~~n-g~~IggR~Ie  409 (612)
                      |+|+|||.+..+++|+++|.. +.+..|++..+++|+++|+|||+|.|.++|++|++.+ +..++||.|+
T Consensus         1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~   70 (70)
T PF14259_consen    1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR   70 (70)
T ss_dssp             EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred             CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence            457888888888888877765 4588999999988999999999999999999999854 4899999875

k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....

>KOG4207|consensus

Probab=98.97  E-value=6.6e-10  Score=109.02  Aligned_cols=77  Identities=19%  Similarity=0.290  Sum_probs=70.4

Q ss_pred             ccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEE
Q psy16116        438 QVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIRY  515 (612)
Q Consensus       438 ~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~  515 (612)
                      -..|.|-||-|.++-+||+.+|++||    .|.    .|.|+.|+ ++.++|||||.|....||+.||+ +||..++||.
T Consensus        13 m~SLkVdNLTyRTspd~LrrvFekYG----~vg----DVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRe   84 (256)
T KOG4207|consen   13 MTSLKVDNLTYRTSPDDLRRVFEKYG----RVG----DVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRE   84 (256)
T ss_pred             ceeEEecceeccCCHHHHHHHHHHhC----ccc----ceecccccccccccceeEEEeeecchHHHHHHhhcceeeccce
Confidence            35699999999999999999999999    554    49999998 78899999999999999999996 8999999999


Q ss_pred             EEEEecc
Q psy16116        516 IELFRST  522 (612)
Q Consensus       516 IeV~~as  522 (612)
                      |.|..+.
T Consensus        85 lrVq~ar   91 (256)
T KOG4207|consen   85 LRVQMAR   91 (256)
T ss_pred             eeehhhh
Confidence            9998664

>KOG0108|consensus

Probab=98.97  E-value=1.3e-09  Score=119.41  Aligned_cols=77  Identities=21%  Similarity=0.317  Sum_probs=71.3

Q ss_pred             cEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEEE
Q psy16116        439 VIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIRYI  516 (612)
Q Consensus       439 ~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~I  516 (612)
                      +.|||+|+||+++|++|.++|++.|        .+.+++++.|+ +|++|||||++|.+.+++.+|++ +|+.+++||.+
T Consensus        19 ~~v~vgnip~~~se~~l~~~~~~~g--------~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l   90 (435)
T KOG0108|consen   19 SSVFVGNIPYEGSEEQLLSIFSGVG--------PVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKL   90 (435)
T ss_pred             cceEecCCCCcccHHHHHHHHhccC--------ccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceE
Confidence            6799999999999999999999999        44569999998 79999999999999999999997 79999999999


Q ss_pred             EEEecch
Q psy16116        517 ELFRSTT  523 (612)
Q Consensus       517 eV~~as~  523 (612)
                      +|..+..
T Consensus        91 ~v~~~~~   97 (435)
T KOG0108|consen   91 RVNYASN   97 (435)
T ss_pred             Eeecccc
Confidence            9998853

>KOG0121|consensus

Probab=98.96  E-value=1.2e-09  Score=100.14  Aligned_cols=77  Identities=16%  Similarity=0.226  Sum_probs=68.1

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIR  514 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR  514 (612)
                      .+.+|||+||+|.++|+.|.++|+.+|        .+..|.+-.|+ +-.+-|||||+|-+.+||+.||+ .++..|+.|
T Consensus        35 ~S~tvyVgNlSfyttEEqiyELFs~cG--------~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr  106 (153)
T KOG0121|consen   35 KSCTVYVGNLSFYTTEEQIYELFSKCG--------DIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDR  106 (153)
T ss_pred             hcceEEEeeeeeeecHHHHHHHHHhcc--------chheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCccccc
Confidence            357899999999999999999999999        45667776777 45689999999999999999997 699999999


Q ss_pred             EEEEEec
Q psy16116        515 YIELFRS  521 (612)
Q Consensus       515 ~IeV~~a  521 (612)
                      .|.|...
T Consensus       107 ~ir~D~D  113 (153)
T KOG0121|consen  107 PIRIDWD  113 (153)
T ss_pred             ceeeecc
Confidence            9999764

>PF00076 RRM_1: RNA recognition motif

Probab=98.96  E-value=8.1e-10  Score=89.01  Aligned_cols=67  Identities=19%  Similarity=0.256  Sum_probs=53.7

Q ss_pred             eecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEE
Q psy16116        343 LVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIE  409 (612)
Q Consensus       343 lV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~Ie  409 (612)
                      +|+|||.+.++++|+++|.. +.+..+.+..+..|+++|+|||+|++.++|++|++ +++..++|+.|+
T Consensus         2 ~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir   70 (70)
T PF00076_consen    2 YVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR   70 (70)
T ss_dssp             EEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred             EEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence            45666666555555555544 44788899888788999999999999999999998 899999999874

(a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....

>KOG0226|consensus

Probab=98.92  E-value=1.9e-08  Score=101.50  Aligned_cols=139  Identities=18%  Similarity=0.160  Sum_probs=106.5

Q ss_pred             EEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCccchhhccCCCCcchhhhccCCcccEEEEeCCC
Q psy16116        369 ALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGEDFINVAGGNNNEAQAFLTRGAQVIIRMRGLP  447 (612)
Q Consensus       369 ~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~e~~~~~g~~~~e~~~~~~~~~~~~VfV~nLP  447 (612)
                      .++++..+.-++++|+.|.......++-. .++++++.+.|+....+.  |....-..        -...++.||.+.|.
T Consensus       130 k~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gts--wedPsl~e--------w~~~DfRIfcgdlg  199 (290)
T KOG0226|consen  130 KLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGTS--WEDPSLAE--------WDEDDFRIFCGDLG  199 (290)
T ss_pred             hhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceeeccccc--cCCccccc--------Cccccceeeccccc
Confidence            34556667788999999988877777774 677888888766644332  21110000        12345789999999


Q ss_pred             CCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHH-HhCCcccCCEEEEEEecchHH
Q psy16116        448 YECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKAL-SKHKESIGIRYIELFRSTTAE  525 (612)
Q Consensus       448 ~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL-~~~~~~iggR~IeV~~as~~e  525 (612)
                      -+++++.|-..|++|-        .-...++++|. +|+++|||||.|.+.+|+.+|+ ++++.++|.|.|.++.+.-++
T Consensus       200 Nevnd~vl~raf~Kfp--------sf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS~wke  271 (290)
T KOG0226|consen  200 NEVNDDVLARAFKKFP--------SFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKSEWKE  271 (290)
T ss_pred             ccccHHHHHHHHHhcc--------chhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhhhHHh
Confidence            9999999999999986        33457777775 8999999999999999999999 589999999999988776555

>KOG0114|consensus

Probab=98.90  E-value=8.8e-09  Score=91.49  Aligned_cols=83  Identities=20%  Similarity=0.342  Sum_probs=69.9

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRY  515 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~  515 (612)
                      ..+.|||+||||++|.++..++|.+||    .    +..|+|-  .+..-+|-|||.+++-.||++|++ +++..+.+|+
T Consensus        17 vnriLyirNLp~~ITseemydlFGkyg----~----IrQIRiG--~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ry   86 (124)
T KOG0114|consen   17 VNRILYIRNLPFKITSEEMYDLFGKYG----T----IRQIRIG--NTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRY   86 (124)
T ss_pred             hheeEEEecCCccccHHHHHHHhhccc----c----eEEEEec--CccCcCceEEEEehHhhhHHHHHHHhcccccCCce
Confidence            457899999999999999999999999    3    4557764  344568999999999999999997 7999999999


Q ss_pred             EEEEecchHHHHHH
Q psy16116        516 IELFRSTTAEVQQV  529 (612)
Q Consensus       516 IeV~~as~~e~~~~  529 (612)
                      +.|..-...+..+.
T Consensus        87 l~vlyyq~~~~~~~  100 (124)
T KOG0114|consen   87 LVVLYYQPEDAFKL  100 (124)
T ss_pred             EEEEecCHHHHHHH
Confidence            99988866655443

>smart00361 RRM_1 RNA recognition motif

Probab=98.89  E-value=6.3e-09  Score=86.13  Aligned_cols=60  Identities=13%  Similarity=0.173  Sum_probs=50.9

Q ss_pred             CHHHHHHHHh----cCCCCccccccCceeEE-EeeCC-C--CCceeEEEEEeCCHHHHHHHHH-hCCcccCCEEEEE
Q psy16116        451 TAKQVIDFFE----AGTENSCNVMDGEEGVL-FVKKP-D--GKATGDAFVLFEKEEEADKALS-KHKESIGIRYIEL  518 (612)
Q Consensus       451 te~dLrefF~----~~Gi~~~~Ivd~v~~I~-i~~d~-~--GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~IeV  518 (612)
                      .++||+++|+    .||        .+.+|. |+.++ +  |+++|||||+|.+.++|.+|++ +|+..++||.|.+
T Consensus         1 ~~~~l~~~~~~~~~~fG--------~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~   69 (70)
T smart00361        1 KDEDFEREFSEEEEYFG--------EVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA   69 (70)
T ss_pred             CchhHHHHHHHHHHhcC--------CeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence            3689999999    999        345564 55554 4  8999999999999999999996 7999999999876

>KOG0126|consensus

Probab=98.87  E-value=2.9e-10  Score=109.61  Aligned_cols=77  Identities=25%  Similarity=0.367  Sum_probs=70.4

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIR  514 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR  514 (612)
                      .+..|||+||||..||.||.-.|++||    +|||    |.+++|. +|+|+||||..|++...--.|+. +||-.|.||
T Consensus        34 dsA~Iyiggl~~~LtEgDil~VFSqyG----e~vd----inLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gR  105 (219)
T KOG0126|consen   34 DSAYIYIGGLPYELTEGDILCVFSQYG----EIVD----INLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGR  105 (219)
T ss_pred             cceEEEECCCcccccCCcEEEEeeccC----ceEE----EEEEecCCCCcccceEEEEecCccceEEEEeccCCceecce
Confidence            346799999999999999999999999    5655    9999997 89999999999999999999995 899999999


Q ss_pred             EEEEEec
Q psy16116        515 YIELFRS  521 (612)
Q Consensus       515 ~IeV~~a  521 (612)
                      .|+|.-.
T Consensus       106 tirVDHv  112 (219)
T KOG0126|consen  106 TIRVDHV  112 (219)
T ss_pred             eEEeeec
Confidence            9999876

>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]

Probab=98.87  E-value=1.1e-08  Score=100.33  Aligned_cols=157  Identities=17%  Similarity=0.198  Sum_probs=101.7

Q ss_pred             ccceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCc-
Q psy16116        340 LCPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANG-  415 (612)
Q Consensus       340 l~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~-  415 (612)
                      .+++|+||+++.++++|+++|.. +.+..|++..++ .|+++|||||+|.+.++|..|++ +++..+.||.|.|..... 
T Consensus       116 ~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~~  195 (306)
T COG0724         116 NTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQPA  195 (306)
T ss_pred             ceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccccc
Confidence            45667777776666666665554 447789998885 79999999999999999999998 667999999999987542 


Q ss_pred             -cchhhccC--CCC--cc-hh-hhccCCcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCC-Cce
Q psy16116        416 -EDFINVAG--GNN--NE-AQ-AFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDG-KAT  487 (612)
Q Consensus       416 -~e~~~~~g--~~~--~e-~~-~~~~~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~G-rsk  487 (612)
                       ........  ...  .. .. ..........+++++++..++..++...|..+|    .+    ..+.+.....+ ...
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~----~~~~~~~~~~~~~~~  267 (306)
T COG0724         196 SQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRG----DI----VRASLPPSKDGKIPK  267 (306)
T ss_pred             cccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccc----cc----eeeeccCCCCCcccc
Confidence             11100000  000  00 00 001123567799999999999999999999998    22    23444433333 244


Q ss_pred             eEEEEEeCCHHHHHHHH
Q psy16116        488 GDAFVLFEKEEEADKAL  504 (612)
Q Consensus       488 G~AFV~F~s~edA~kAL  504 (612)
                      ++.++.+....+.....
T Consensus       268 ~~~~~~~~~~~~~~~~~  284 (306)
T COG0724         268 SRSFVGNEASKDALESN  284 (306)
T ss_pred             cccccchhHHHhhhhhh
Confidence            44444444444444443

>KOG0149|consensus

Probab=98.83  E-value=3.2e-09  Score=106.18  Aligned_cols=74  Identities=22%  Similarity=0.157  Sum_probs=59.1

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccC
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKAN  414 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~  414 (612)
                      +|||+||++++..+.+++||+. +.|.+.+++.|+ .|||+|||||+|++.|.|.+|++.-+-.|+||...+..+.
T Consensus        14 KifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnlA~   89 (247)
T KOG0149|consen   14 KIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNLAS   89 (247)
T ss_pred             EEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccchhh
Confidence            4567777777666666665554 457788888887 5999999999999999999999988889999988776554

>PLN03120 nucleic acid binding protein; Provisional

Probab=98.81  E-value=6.7e-09  Score=106.39  Aligned_cols=73  Identities=21%  Similarity=0.129  Sum_probs=60.7

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccCc
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANG  415 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~~  415 (612)
                      +|+|+||+++.++++|++||.. |.+.+|.|+.+..  ++|||||+|+++++|+.||.+++..|+||.|+|..+..
T Consensus         6 tVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~--~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~~   79 (260)
T PLN03120          6 TVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE--RSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAED   79 (260)
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC--CCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEeccC
Confidence            4567777777777777777765 4589999987753  67999999999999999999999999999999987753

>KOG0111|consensus

Probab=98.72  E-value=7.6e-09  Score=102.41  Aligned_cols=82  Identities=21%  Similarity=0.227  Sum_probs=73.8

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIR  514 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR  514 (612)
                      ..++|||+||...++|.-|...|-.||    .|    ..|.++.|. ++|.||||||+|.-.|||..||. ||..++.||
T Consensus         9 ~KrtlYVGGladeVtekvLhaAFIPFG----DI----~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~Gr   80 (298)
T KOG0111|consen    9 QKRTLYVGGLADEVTEKVLHAAFIPFG----DI----KDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGR   80 (298)
T ss_pred             cceeEEeccchHHHHHHHHHhcccccc----ch----hhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcce
Confidence            347899999999999999999999999    45    459999996 79999999999999999999995 899999999


Q ss_pred             EEEEEecchHHH
Q psy16116        515 YIELFRSTTAEV  526 (612)
Q Consensus       515 ~IeV~~as~~e~  526 (612)
                      .|+|..+.+...
T Consensus        81 tirVN~AkP~ki   92 (298)
T KOG0111|consen   81 TIRVNLAKPEKI   92 (298)
T ss_pred             eEEEeecCCccc
Confidence            999999876543

>KOG0107|consensus

Probab=98.70  E-value=3.8e-08  Score=94.75  Aligned_cols=75  Identities=21%  Similarity=0.198  Sum_probs=64.4

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRY  515 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~  515 (612)
                      ....|||+||+..+++.||...|..||        ...+|-|..    ++-|||||+|++..||+.|+. +|+..|.|..
T Consensus         9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG--------~lrsvWvAr----nPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r   76 (195)
T KOG0107|consen    9 GNTKVYVGNLGSRATKRELERAFSKYG--------PLRSVWVAR----NPPGFAFVEFEDPRDAEDAVRYLDGKDICGSR   76 (195)
T ss_pred             CCceEEeccCCCCcchHHHHHHHHhcC--------cceeEEEee----cCCCceEEeccCcccHHHHHhhcCCccccCce
Confidence            346799999999999999999999999        234455543    467899999999999999995 8999999999


Q ss_pred             EEEEecch
Q psy16116        516 IELFRSTT  523 (612)
Q Consensus       516 IeV~~as~  523 (612)
                      |.|..++-
T Consensus        77 ~rVE~S~G   84 (195)
T KOG0107|consen   77 IRVELSTG   84 (195)
T ss_pred             EEEEeecC
Confidence            99988753

>KOG1548|consensus

Probab=98.70  E-value=3e-07  Score=96.35  Aligned_cols=170  Identities=15%  Similarity=0.199  Sum_probs=114.6

Q ss_pred             ceecCCCHHH----HHhhHhhccccc-----CeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEe
Q psy16116        342 PLVQNIWLSL----LLNTIPGYEQVL-----GLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVT  411 (612)
Q Consensus       342 vlV~nLp~~~----~e~~fkeff~~~-----~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~  411 (612)
                      |+|.|||.+.    ..++|+.|+.+.     +.--|+|-++.+|.-+|-|.+.|--.|+++.|++ ++...+.|+.|+|.
T Consensus       137 VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~~rVe  216 (382)
T KOG1548|consen  137 VYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKKLRVE  216 (382)
T ss_pred             EEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcEEEEe
Confidence            4455555554    455555555431     1224778888899999999999999999999998 78899999999998


Q ss_pred             ccCcc---chhhcc--C-CCCcchh----------------hhccCCcccEEEEeCCC----CCCC-------HHHHHHH
Q psy16116        412 KANGE---DFINVA--G-GNNNEAQ----------------AFLTRGAQVIIRMRGLP----YECT-------AKQVIDF  458 (612)
Q Consensus       412 ~s~~~---e~~~~~--g-~~~~e~~----------------~~~~~~~~~~VfV~nLP----~s~t-------e~dLref  458 (612)
                      ++.-+   ++.-..  . .....++                .........+|.++|+=    +..+       .+||++=
T Consensus       217 rAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~ee  296 (382)
T KOG1548|consen  217 RAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEE  296 (382)
T ss_pred             hhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHH
Confidence            77421   111000  0 0000000                00011346889999973    3344       3455566


Q ss_pred             HhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEEEEEEecc
Q psy16116        459 FEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRYIELFRST  522 (612)
Q Consensus       459 F~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~IeV~~as  522 (612)
                      -++||        .+.+|.|. |  .-+.|.+-|.|.+.++|+.+++ |+|.+++||.|.-+...
T Consensus       297 c~K~G--------~v~~vvv~-d--~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~D  350 (382)
T KOG1548|consen  297 CEKFG--------QVRKVVVY-D--RHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWD  350 (382)
T ss_pred             HHHhC--------CcceEEEe-c--cCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeC
Confidence            78888        23456554 3  3467899999999999999997 79999999999877653

>PLN03121 nucleic acid binding protein; Provisional

Probab=98.70  E-value=2.3e-08  Score=101.22  Aligned_cols=73  Identities=16%  Similarity=0.070  Sum_probs=62.5

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccCc
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANG  415 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~~  415 (612)
                      +|+|+||+++.++++|++||.. |.|.+|+|+++  ++.+|||||+|+++++|+.||.++|..|.++.|.|.....
T Consensus         7 TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D--~et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~~   80 (243)
T PLN03121          7 TAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRS--GEYACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWGQ   80 (243)
T ss_pred             EEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecC--CCcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCcc
Confidence            5668888888888888887776 56899999876  5677999999999999999999999999999999977653

>KOG0128|consensus

Probab=98.69  E-value=4.6e-09  Score=119.72  Aligned_cols=146  Identities=17%  Similarity=0.174  Sum_probs=117.8

Q ss_pred             CCcccceecCCCHHHHHhhHhhcccc-cCeeeEEEe-eCCCCCCcceEEEEeCCHHHHHHHHHhC-CCccCceEEEEecc
Q psy16116        337 PVALCPLVQNIWLSLLLNTIPGYEQV-LGLGGVALC-LSAFGRRNGEAIVRFIDQEHRDMALKRH-KHHIDKRYIEVTKA  413 (612)
Q Consensus       337 ~~~l~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii-~d~~GrsrG~AFVeF~S~EdA~kAL~~n-g~~IggR~IeV~~s  413 (612)
                      .+.+.+|+.||+....+.+++..|.. +.+..+.+. ...+|+.+|+|||+|.+++++.+|+..+ ++.++.        
T Consensus       665 R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~gK--------  736 (881)
T KOG0128|consen  665 RDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFGK--------  736 (881)
T ss_pred             HHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhhh--------
Confidence            45677889999999988888876654 333333333 2336899999999999999999999854 444331        


Q ss_pred             CccchhhccCCCCcchhhhccCCcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEE
Q psy16116        414 NGEDFINVAGGNNNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVL  493 (612)
Q Consensus       414 ~~~e~~~~~g~~~~e~~~~~~~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~  493 (612)
                                               ..|+|+|.||.+|+++++.+|++.|        .+.+.+++..+.|+.+|-|||.
T Consensus       737 -------------------------~~v~i~g~pf~gt~e~~k~l~~~~g--------n~~~~~~vt~r~gkpkg~a~v~  783 (881)
T KOG0128|consen  737 -------------------------ISVAISGPPFQGTKEELKSLASKTG--------NVTSLRLVTVRAGKPKGKARVD  783 (881)
T ss_pred             -------------------------hhhheeCCCCCCchHHHHhhccccC--------Cccccchhhhhccccccceecc
Confidence                                     2399999999999999999999999        3456888888999999999999


Q ss_pred             eCCHHHHHHHHH-hCCcccCCEEEEEEecch
Q psy16116        494 FEKEEEADKALS-KHKESIGIRYIELFRSTT  523 (612)
Q Consensus       494 F~s~edA~kAL~-~~~~~iggR~IeV~~as~  523 (612)
                      |.++.++.+++. .+...+..+.++|..+++
T Consensus       784 y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp  814 (881)
T KOG0128|consen  784 YNTEADASRKVASVDVAGKRENNGEVQVSNP  814 (881)
T ss_pred             CCCcchhhhhcccchhhhhhhcCccccccCC
Confidence            999999999995 588888888888887765

>KOG0130|consensus

Probab=98.68  E-value=3.3e-08  Score=91.55  Aligned_cols=78  Identities=19%  Similarity=0.166  Sum_probs=72.1

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIR  514 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR  514 (612)
                      ++..|||.|+...++|+||.+.|.+||        +++.|++-.|+ +|-.||||.|+|++.++|++|+. +|+..|-|.
T Consensus        71 EGwIi~VtgvHeEatEedi~d~F~dyG--------eiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q  142 (170)
T KOG0130|consen   71 EGWIIFVTGVHEEATEEDIHDKFADYG--------EIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQ  142 (170)
T ss_pred             eeEEEEEeccCcchhHHHHHHHHhhcc--------cccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCC
Confidence            568899999999999999999999999        56789998886 89999999999999999999996 799999999


Q ss_pred             EEEEEecc
Q psy16116        515 YIELFRST  522 (612)
Q Consensus       515 ~IeV~~as  522 (612)
                      .|+|..+-
T Consensus       143 ~v~VDw~F  150 (170)
T KOG0130|consen  143 NVSVDWCF  150 (170)
T ss_pred             ceeEEEEE
Confidence            99999874

>KOG4206|consensus

Probab=98.68  E-value=2.5e-07  Score=92.37  Aligned_cols=156  Identities=12%  Similarity=0.100  Sum_probs=98.0

Q ss_pred             cEEEEeCCCCCCCHHHHHH----HHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCC
Q psy16116        439 VIIRMRGLPYECTAKQVID----FFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGI  513 (612)
Q Consensus       439 ~~VfV~nLP~s~te~dLre----fF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~igg  513 (612)
                      .+|||+||...+..++|+.    +|+.||    +|+      .|..-++.+.||-|||.|++.+.|-.|+. ++|-.+-|
T Consensus        10 ~TlYInnLnekI~~~elkrsL~~LFsqfG----~il------dI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFyg   79 (221)
T KOG4206|consen   10 GTLYINNLNEKIKKDELKRSLYLLFSQFG----KIL------DISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYG   79 (221)
T ss_pred             ceEeehhccccccHHHHHHHHHHHHHhhC----CeE------EEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccC
Confidence            4899999999999999999    999999    563      45555678999999999999999999996 79999999


Q ss_pred             EEEEEEecchH-HHHHH-hhhh-cCCCCCCCCCCCCCC-CCCccccccc--ccCCCCCCCCcccccCCCcccEEEEcCCC
Q psy16116        514 RYIELFRSTTA-EVQQV-LNKT-MELPKNNSLTSSNNG-LSAQQPMLSH--LAQVPVPYLPQHIITSGTRKDCIRLRGLP  587 (612)
Q Consensus       514 R~IeV~~as~~-e~~~~-~~~~-~~~~~~~~~~~e~~~-~s~~~~~~~~--~s~~p~~~~~~~~~~~~~~~~~VfVrNLP  587 (612)
                      ++++|..+..+ +.... .+.. ...++.........+ .....+....  ....|. .+   ..........+|+.|||
T Consensus        80 K~mriqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~-p~---~~~~~ppn~ilf~~niP  155 (221)
T KOG4206|consen   80 KPMRIQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPP-PF---LAQMAPPNNILFLTNIP  155 (221)
T ss_pred             chhheecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCC-Cc---cccCCCCceEEEEecCC
Confidence            99999988432 32211 1100 000000000000000 0000000000  001110 01   01224567789999999


Q ss_pred             ccCCHHHHHHhhccC---CcEeEe
Q psy16116        588 YEALCILMDIFFVGQ---QDSFVH  608 (612)
Q Consensus       588 f~vTeeDLkefFs~~---gdI~~~  608 (612)
                      -+++.+.|..+|..|   .+|+++
T Consensus       156 ~es~~e~l~~lf~qf~g~keir~i  179 (221)
T KOG4206|consen  156 SESESEMLSDLFEQFPGFKEIRLI  179 (221)
T ss_pred             cchhHHHHHHHHhhCcccceeEec
Confidence            999999888887765   566654

>KOG4206|consensus

Probab=98.68  E-value=5e-07  Score=90.18  Aligned_cols=172  Identities=18%  Similarity=0.190  Sum_probs=114.3

Q ss_pred             CCcEeecCCCCCCCcccceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCc
Q psy16116        325 TPTVYTIPTPGNPVALCPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHH  402 (612)
Q Consensus       325 ~~tvfV~~l~~~~~~l~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~  402 (612)
                      ..|+||.++..-          +..++++.-|...|.. +.+.+|...+  ..+.||-|||.|.+.+.|-.|+. ++|-.
T Consensus         9 n~TlYInnLnek----------I~~~elkrsL~~LFsqfG~ildI~a~k--t~KmRGQA~VvFk~~~~As~A~r~l~gfp   76 (221)
T KOG4206|consen    9 NGTLYINNLNEK----------IKKDELKRSLYLLFSQFGKILDISAFK--TPKMRGQAFVVFKETEAASAALRALQGFP   76 (221)
T ss_pred             CceEeehhcccc----------ccHHHHHHHHHHHHHhhCCeEEEEecC--CCCccCceEEEecChhHHHHHHHHhcCCc
Confidence            347775553332          3336666644445544 3477777654  56899999999999999999996 78888


Q ss_pred             cCceEEEEeccCccc-h-hhccC-------CCCcc------------hh-----------hh--ccCCcccEEEEeCCCC
Q psy16116        403 IDKRYIEVTKANGED-F-INVAG-------GNNNE------------AQ-----------AF--LTRGAQVIIRMRGLPY  448 (612)
Q Consensus       403 IggR~IeV~~s~~~e-~-~~~~g-------~~~~e------------~~-----------~~--~~~~~~~~VfV~nLP~  448 (612)
                      +=|+.++|..+..+. . .+..+       ....+            ..           .+  .......++|+.|||.
T Consensus        77 FygK~mriqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~  156 (221)
T KOG4206|consen   77 FYGKPMRIQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPS  156 (221)
T ss_pred             ccCchhheecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCc
Confidence            889999887665431 1 11010       00000            00           00  0123567899999999


Q ss_pred             CCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccC-CEEEEEEe
Q psy16116        449 ECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIG-IRYIELFR  520 (612)
Q Consensus       449 s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~ig-gR~IeV~~  520 (612)
                      +++.+.+..+|+.|.        +-++|+++..    .+|.|||+|.+...+..|.. +.+-.|- ...+.|..
T Consensus       157 es~~e~l~~lf~qf~--------g~keir~i~~----~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~  218 (221)
T KOG4206|consen  157 ESESEMLSDLFEQFP--------GFKEIRLIPP----RSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITF  218 (221)
T ss_pred             chhHHHHHHHHhhCc--------ccceeEeccC----CCceeEEecchhhhhHHHhhhhccceeccCceEEecc
Confidence            999999999999998        5678888743    35799999999999888875 4554443 44555543

>KOG0147|consensus

Probab=98.65  E-value=1.8e-08  Score=110.56  Aligned_cols=134  Identities=13%  Similarity=0.070  Sum_probs=102.5

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHHhCCcccCCEE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALSKHKESIGIRY  515 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~~~~~~iggR~  515 (612)
                      ..++||+--|+-.++..||.+||+..|        .+..|+|+.|+ +++++|.|||+|-+.+.+-.||.+.|+.+.|-+
T Consensus       178 d~Rtvf~~qla~r~~pRdL~efFs~~g--------kVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~p  249 (549)
T KOG0147|consen  178 DQRTVFCMQLARRNPPRDLEEFFSIVG--------KVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVP  249 (549)
T ss_pred             hHHHHHHHHHhhcCCchhHHHHHHhhc--------CcceeEeeccccchhhcceeEEEEecccchhhHhhhcCCcccCce
Confidence            357788888999999999999999999        34559999998 789999999999999999999999999999999


Q ss_pred             EEEEecchHHHHHHhhhhcCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCcccccCCCcccEEEEcCCCccCCHHHH
Q psy16116        516 IELFRSTTAEVQQVLNKTMELPKNNSLTSSNNGLSAQQPMLSHLAQVPVPYLPQHIITSGTRKDCIRLRGLPYEALCILM  595 (612)
Q Consensus       516 IeV~~as~~e~~~~~~~~~~~~~~~~~~~e~~~~s~~~~~~~~~s~~p~~~~~~~~~~~~~~~~~VfVrNLPf~vTeeDL  595 (612)
                      |-|.....+... +...+.        .-+..+           ...              ....|||+||.|+.|+++|
T Consensus       250 v~vq~sEaeknr-~a~~s~--------a~~~k~-----------~~~--------------p~~rl~vgnLHfNite~~l  295 (549)
T KOG0147|consen  250 VIVQLSEAEKNR-AANASP--------ALQGKG-----------FTG--------------PMRRLYVGNLHFNITEDML  295 (549)
T ss_pred             eEecccHHHHHH-HHhccc--------cccccc-----------ccc--------------chhhhhhcccccCchHHHH
Confidence            998765433221 111110        000000           000              1112999999999999999


Q ss_pred             HHhhccCCcEeEeeCCC
Q psy16116        596 DIFFVGQQDSFVHKVPK  612 (612)
Q Consensus       596 kefFs~~gdI~~~kip~  612 (612)
                      +..|+.||+|-.+..++
T Consensus       296 r~ifepfg~Ie~v~l~~  312 (549)
T KOG0147|consen  296 RGIFEPFGKIENVQLTK  312 (549)
T ss_pred             hhhccCcccceeeeecc
Confidence            99999999998876654

>smart00362 RRM_2 RNA recognition motif

Probab=98.65  E-value=6.9e-08  Score=76.28  Aligned_cols=64  Identities=20%  Similarity=0.283  Sum_probs=49.4

Q ss_pred             eecCCCH----HHHHhhHhhcccccCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEE
Q psy16116        343 LVQNIWL----SLLLNTIPGYEQVLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEV  410 (612)
Q Consensus       343 lV~nLp~----~~~e~~fkeff~~~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV  410 (612)
                      +++||+.    ++++++|+.|+   .+..+.+..++ |.++|+|||+|.+.++|++|++ +++..++|+.|.|
T Consensus         3 ~i~~l~~~~~~~~l~~~~~~~g---~v~~~~~~~~~-~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v   71 (72)
T smart00362        3 FVGNLPPDVTEEDLKELFSKFG---PIESVKIPKDT-GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV   71 (72)
T ss_pred             EEcCCCCcCCHHHHHHHHHhcC---CEEEEEEecCC-CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence            3445544    45555555544   47788888776 8889999999999999999997 6778899998876

>PF13893 RRM_5: RNA recognition motif

Probab=98.63  E-value=1.2e-07  Score=74.64  Aligned_cols=55  Identities=24%  Similarity=0.269  Sum_probs=46.7

Q ss_pred             HHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEEEEEEec
Q psy16116        455 VIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRYIELFRS  521 (612)
Q Consensus       455 LrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~IeV~~a  521 (612)
                      |+++|+.||        .+.+|.+..+.    +|+|||+|.+.++|++|++ +|+..++||.|+|..|
T Consensus         1 L~~~f~~fG--------~V~~i~~~~~~----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a   56 (56)
T PF13893_consen    1 LYKLFSKFG--------EVKKIKIFKKK----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA   56 (56)
T ss_dssp             HHHHHTTTS---------EEEEEEETTS----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred             ChHHhCCcc--------cEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence            689999999        45667776433    6999999999999999997 7999999999999764

(a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....

>smart00360 RRM RNA recognition motif

Probab=98.58  E-value=1.5e-07  Score=73.90  Aligned_cols=63  Identities=22%  Similarity=0.301  Sum_probs=49.6

Q ss_pred             cCCCHHHHHhhHhhcccccCeeeEEEeeCCC-CCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEE
Q psy16116        345 QNIWLSLLLNTIPGYEQVLGLGGVALCLSAF-GRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEV  410 (612)
Q Consensus       345 ~nLp~~~~e~~fkeff~~~~v~~V~ii~d~~-GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV  410 (612)
                      ..++.+++.++|+.|+   .+..+.+..++. ++++|+|||+|.+.++|.+|++ +++..++|+.|.|
T Consensus         6 ~~~~~~~l~~~f~~~g---~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v   70 (71)
T smart00360        6 PDVTEEELRELFSKFG---KIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV   70 (71)
T ss_pred             cccCHHHHHHHHHhhC---CEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence            3344556666666555   377888888764 8899999999999999999997 6778889998876

>KOG0122|consensus

Probab=98.56  E-value=1.2e-07  Score=95.46  Aligned_cols=78  Identities=15%  Similarity=0.065  Sum_probs=64.8

Q ss_pred             CcccceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccC
Q psy16116        338 VALCPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKAN  414 (612)
Q Consensus       338 ~~l~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~  414 (612)
                      ++.++-|.||+.+..|++|.++|.. +.+..|.+.+|+ +|.++|||||.|.+.+||.+||. +||.-+++=.++|.++.
T Consensus       188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk  267 (270)
T KOG0122|consen  188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK  267 (270)
T ss_pred             ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence            4555668888888888888876654 668899999998 59999999999999999999997 78888888888887665


Q ss_pred             c
Q psy16116        415 G  415 (612)
Q Consensus       415 ~  415 (612)
                      .
T Consensus       268 P  268 (270)
T KOG0122|consen  268 P  268 (270)
T ss_pred             C
Confidence            3

>KOG1457|consensus

Probab=98.56  E-value=1.2e-06  Score=87.39  Aligned_cols=55  Identities=24%  Similarity=0.327  Sum_probs=41.4

Q ss_pred             ccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEee--CCCCCceeEEEEEeCCHHHHHHHHH
Q psy16116        438 QVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVK--KPDGKATGDAFVLFEKEEEADKALS  505 (612)
Q Consensus       438 ~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~--d~~GrskG~AFV~F~s~edA~kAL~  505 (612)
                      ..+|||-||..+|+|++|+.+|+.|-        +   .++++  .+.|.  -.|||+|++-+.|..|+.
T Consensus       210 cstlfianl~~~~~ed~l~~~~~~~~--------g---f~~l~~~~~~g~--~vaf~~~~~~~~at~am~  266 (284)
T KOG1457|consen  210 CSTLFIANLGPNCTEDELKQLLSRYP--------G---FHILKIRARGGM--PVAFADFEEIEQATDAMN  266 (284)
T ss_pred             hhhHhhhccCCCCCHHHHHHHHHhCC--------C---ceEEEEecCCCc--ceEeecHHHHHHHHHHHH
Confidence            56799999999999999999999986        1   23332  33443  368888888888888774

>KOG4210|consensus

Probab=98.54  E-value=8.1e-08  Score=100.55  Aligned_cols=166  Identities=16%  Similarity=0.109  Sum_probs=110.7

Q ss_pred             ceecCCCHHHHHhhHhhcccc-cCeeeEEEee-CCCCCCcceEEEEeCCHHHHHHHHHhCCC-ccCceEEEEeccCccch
Q psy16116        342 PLVQNIWLSLLLNTIPGYEQV-LGLGGVALCL-SAFGRRNGEAIVRFIDQEHRDMALKRHKH-HIDKRYIEVTKANGEDF  418 (612)
Q Consensus       342 vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~-d~~GrsrG~AFVeF~S~EdA~kAL~~ng~-~IggR~IeV~~s~~~e~  418 (612)
                      .+++++.+..-+.....++.. +...+..+.. .....++|+++|.|+..+.+..||...+. .+.++.++.-.......
T Consensus        91 ~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~~~~~  170 (285)
T KOG4210|consen   91 FFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNTRRGL  170 (285)
T ss_pred             ccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccccccc
Confidence            345555544444433333322 2233334433 33578999999999999999999998774 55555444422222110


Q ss_pred             hhccCCCCcchhhhccCCcccEEE-EeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCC
Q psy16116        419 INVAGGNNNEAQAFLTRGAQVIIR-MRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEK  496 (612)
Q Consensus       419 ~~~~g~~~~e~~~~~~~~~~~~Vf-V~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s  496 (612)
                       . ..    ........+...+++ |+||++++++++|+++|..+|        .+..|+++.++ .|.++|||||.|.+
T Consensus       171 -~-~~----n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~--------~i~~~r~~~~~~s~~~kg~a~~~~~~  236 (285)
T KOG4210|consen  171 -R-PK----NKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSG--------EITSVRLPTDEESGDSKGFAYVDFSA  236 (285)
T ss_pred             -c-cc----chhcccccCccccceeecccccccchHHHhhhccCcC--------cceeeccCCCCCccchhhhhhhhhhh
Confidence             0 00    000001122334455 999999999999999999998        45678888776 78999999999999


Q ss_pred             HHHHHHHHHhCCcccCCEEEEEEec
Q psy16116        497 EEEADKALSKHKESIGIRYIELFRS  521 (612)
Q Consensus       497 ~edA~kAL~~~~~~iggR~IeV~~a  521 (612)
                      ..+..+++......+++|.+.+...
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~  261 (285)
T KOG4210|consen  237 GNSKKLALNDQTRSIGGRPLRLEED  261 (285)
T ss_pred             chhHHHHhhcccCcccCcccccccC
Confidence            9999999976778899998887654

>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability

Probab=98.52  E-value=3.1e-07  Score=72.90  Aligned_cols=69  Identities=19%  Similarity=0.182  Sum_probs=51.7

Q ss_pred             eecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEe
Q psy16116        343 LVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVT  411 (612)
Q Consensus       343 lV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~  411 (612)
                      +++|||....++++++++.. +.+..+.+..++.++.+|+|||+|.+.++|+.|++ .++..++|+.+.|.
T Consensus         3 ~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~   73 (74)
T cd00590           3 FVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVE   73 (74)
T ss_pred             EEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEe
Confidence            35555554444444444333 45888999888878889999999999999999997 56777999988874

This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).

>smart00361 RRM_1 RNA recognition motif

Probab=98.52  E-value=3.1e-07  Score=76.03  Aligned_cols=61  Identities=13%  Similarity=0.174  Sum_probs=47.6

Q ss_pred             HHHHhhHh-hcccccCeeeEE-EeeCC-C--CCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEE
Q psy16116        350 SLLLNTIP-GYEQVLGLGGVA-LCLSA-F--GRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEV  410 (612)
Q Consensus       350 ~~~e~~fk-eff~~~~v~~V~-ii~d~-~--GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV  410 (612)
                      ++++++|+ +|...+.+..|. ++.++ +  |+++|||||+|.+.+||.+|++ +|+..++||.|.+
T Consensus         3 ~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~   69 (70)
T smart00361        3 EDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA   69 (70)
T ss_pred             hhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence            56778887 222334577774 44443 4  8899999999999999999997 8999999999876

>KOG0128|consensus

Probab=98.47  E-value=2.2e-08  Score=114.38  Aligned_cols=178  Identities=16%  Similarity=0.112  Sum_probs=124.8

Q ss_pred             HHHhhHhhcccccCeeeEEEeeCCCCCCcc-eEEEEeCCHHHHHHHHHhCCCccCceEEEEeccCccchhhccCCCCcch
Q psy16116        351 LLLNTIPGYEQVLGLGGVALCLSAFGRRNG-EAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGEDFINVAGGNNNEA  429 (612)
Q Consensus       351 ~~e~~fkeff~~~~v~~V~ii~d~~GrsrG-~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~~~e~~~~~g~~~~e~  429 (612)
                      ..+..++.+..   +..|++-........+ ++++.++...+++.|+.-.+.-++++.+.|-.+..++......-.+.+.
T Consensus       588 ~~~~~~k~~~~---vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~pa~~~~a~~~~av~~ad~~~~~~~~kvs~n~~  664 (881)
T KOG0128|consen  588 IQRRQFKGEGN---VEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATVPAGGALANRSAAVGLADAEEKEENFKVSPNEI  664 (881)
T ss_pred             hhHHHhhcccc---cccccCccccccccccchhhhhhccccchhhcccccccccCCccccCCCCCchhhhhccCcCchHH
Confidence            33455555443   5555553322222334 8899999999999999988888999988776665544322211111111


Q ss_pred             hhhccCCcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEe-eCCCCCceeEEEEEeCCHHHHHHHHHhCC
Q psy16116        430 QAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFV-KKPDGKATGDAFVLFEKEEEADKALSKHK  508 (612)
Q Consensus       430 ~~~~~~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~-~d~~GrskG~AFV~F~s~edA~kAL~~~~  508 (612)
                      +      ...++||+||+..+.+.||..+|..+|.  |      +.+++. ...+|+.||.|||+|.+++++.+|+.++.
T Consensus       665 R------~~~~~fvsnl~~~~~~~dl~~~~~~~~~--~------e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d  730 (881)
T KOG0128|consen  665 R------DLIKIFVSNLSPKMSEEDLSERFSPSGT--I------EVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRD  730 (881)
T ss_pred             H------HHHHHHHhhcchhhcCchhhhhcCccch--h------hhHHHHHHhhccccccceeeEeecCCchhhhhhhhh
Confidence            1      2356999999999999999999999982  2      223333 33478999999999999999999998643


Q ss_pred             cccCCEEEEEEecchHHHHHHhhhhcCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCcccccCCCcccEEEEcCCCc
Q psy16116        509 ESIGIRYIELFRSTTAEVQQVLNKTMELPKNNSLTSSNNGLSAQQPMLSHLAQVPVPYLPQHIITSGTRKDCIRLRGLPY  588 (612)
Q Consensus       509 ~~iggR~IeV~~as~~e~~~~~~~~~~~~~~~~~~~e~~~~s~~~~~~~~~s~~p~~~~~~~~~~~~~~~~~VfVrNLPf  588 (612)
                      ..+-|                                                                +..|+|+|+||
T Consensus       731 ~~~~g----------------------------------------------------------------K~~v~i~g~pf  746 (881)
T KOG0128|consen  731 SCFFG----------------------------------------------------------------KISVAISGPPF  746 (881)
T ss_pred             hhhhh----------------------------------------------------------------hhhhheeCCCC
Confidence            32222                                                                12489999999


Q ss_pred             cCCHHHHHHhhccCCcEeEee
Q psy16116        589 EALCILMDIFFVGQQDSFVHK  609 (612)
Q Consensus       589 ~vTeeDLkefFs~~gdI~~~k  609 (612)
                      ..|+++++.+|++.+.+..+.
T Consensus       747 ~gt~e~~k~l~~~~gn~~~~~  767 (881)
T KOG0128|consen  747 QGTKEELKSLASKTGNVTSLR  767 (881)
T ss_pred             CCchHHHHhhccccCCccccc
Confidence            999999999999998766553

>KOG1457|consensus

Probab=98.43  E-value=1.2e-06  Score=87.31  Aligned_cols=78  Identities=19%  Similarity=0.247  Sum_probs=60.0

Q ss_pred             CcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CC-CceeEEEEEeCCHHHHHHHHH-hCCcccC
Q psy16116        436 GAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DG-KATGDAFVLFEKEEEADKALS-KHKESIG  512 (612)
Q Consensus       436 ~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~G-rskG~AFV~F~s~edA~kAL~-~~~~~ig  512 (612)
                      +.-++|||.|||-+++-.+|..+|+.|-        +-++..|-+.. .+ -.+=+|||+|.+..+|..|+. +||-.++
T Consensus        32 ~~VRTLFVSGLP~DvKpREiynLFR~f~--------GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFD  103 (284)
T KOG1457|consen   32 GAVRTLFVSGLPNDVKPREIYNLFRRFH--------GYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFD  103 (284)
T ss_pred             cccceeeeccCCcccCHHHHHHHhccCC--------CccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeec
Confidence            4568999999999999999999999886        44556664433 22 256899999999999999995 6887776


Q ss_pred             ---CEEEEEEec
Q psy16116        513 ---IRYIELFRS  521 (612)
Q Consensus       513 ---gR~IeV~~a  521 (612)
                         +..++|..+
T Consensus       104 pE~~stLhiElA  115 (284)
T KOG1457|consen  104 PETGSTLHIELA  115 (284)
T ss_pred             cccCceeEeeeh
Confidence               344555444

>KOG0108|consensus

Probab=98.39  E-value=3.8e-07  Score=100.15  Aligned_cols=76  Identities=17%  Similarity=0.128  Sum_probs=68.3

Q ss_pred             ccceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCC-CCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCc
Q psy16116        340 LCPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAF-GRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANG  415 (612)
Q Consensus       340 l~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~-GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~  415 (612)
                      +.|+|+|++|+..++.|.+.|.. +.+.+++++.|++ |+++||||++|.+.+++.+|++ +++..++||.++|.....
T Consensus        19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~   97 (435)
T KOG0108|consen   19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASN   97 (435)
T ss_pred             cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccc
Confidence            57889999999999999987765 6799999999985 8999999999999999999997 788999999999976654

>PLN03213 repressor of silencing 3; Provisional

Probab=98.37  E-value=4.2e-07  Score=98.65  Aligned_cols=73  Identities=11%  Similarity=-0.015  Sum_probs=61.6

Q ss_pred             ccceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCH--HHHHHHHH-hCCCccCceEEEEeccCc
Q psy16116        340 LCPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQ--EHRDMALK-RHKHHIDKRYIEVTKANG  415 (612)
Q Consensus       340 l~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~--EdA~kAL~-~ng~~IggR~IeV~~s~~  415 (612)
                      .++||+||+++.++++|+..|.. |.|.+|.|++. +|  ||||||+|.+.  +++++||+ +|+..++||.|+|..+..
T Consensus        11 MRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE-TG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP   87 (759)
T PLN03213         11 VRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT-KG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKE   87 (759)
T ss_pred             eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc-cC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccH
Confidence            46778888888888888876654 56999999843 56  89999999988  78999997 899999999999988865

>KOG4208|consensus

Probab=98.36  E-value=9e-07  Score=87.35  Aligned_cols=81  Identities=17%  Similarity=0.230  Sum_probs=70.1

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIR  514 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR  514 (612)
                      ....++++.+|+-..+..|..+|..+|    .   .+..+++.+++ +|.++|||||+|+++|.|+-|-+ ||+..|++|
T Consensus        48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~----g---~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~  120 (214)
T KOG4208|consen   48 IEGVVYVDHIPHGFFETEILNYFRQFG----G---TVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEH  120 (214)
T ss_pred             CccceeecccccchhHHHHhhhhhhcC----C---eeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhh
Confidence            456799999999999999999999996    1   23556665654 89999999999999999999997 899999999


Q ss_pred             EEEEEecchH
Q psy16116        515 YIELFRSTTA  524 (612)
Q Consensus       515 ~IeV~~as~~  524 (612)
                      .+++....++
T Consensus       121 lL~c~vmppe  130 (214)
T KOG4208|consen  121 LLECHVMPPE  130 (214)
T ss_pred             eeeeEEeCch
Confidence            9999888766

>KOG1190|consensus

Probab=98.34  E-value=1e-05  Score=86.63  Aligned_cols=229  Identities=15%  Similarity=0.182  Sum_probs=136.3

Q ss_pred             cccceecCCCH----HHHHhhHhhcccccCeeeEEEeeCCCCCCcce-EEEEeCCHHHHHHHHH-hCCCccCc--eEEEE
Q psy16116        339 ALCPLVQNIWL----SLLLNTIPGYEQVLGLGGVALCLSAFGRRNGE-AIVRFIDQEHRDMALK-RHKHHIDK--RYIEV  410 (612)
Q Consensus       339 ~l~vlV~nLp~----~~~e~~fkeff~~~~v~~V~ii~d~~GrsrG~-AFVeF~S~EdA~kAL~-~ng~~Igg--R~IeV  410 (612)
                      =+++++.++-+    +.+-..|+.|+..  .+-|.+     .++.|| |.|.|.+.+.|+.|-. ++|+.|-+  ..++|
T Consensus       150 vLr~iie~m~ypVslDVLHqvFS~fG~V--lKIiTF-----~Knn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrI  222 (492)
T KOG1190|consen  150 VLRTIIENMFYPVSLDVLHQVFSKFGFV--LKIITF-----TKNNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRI  222 (492)
T ss_pred             eEEEEeccceeeeEHHHHHHHHhhccee--EEEEEE-----ecccchhhhhhccchhhHHHHHHhccCCcccCceeEEEe
Confidence            34566666655    5556666666541  222333     234565 8999999999999985 67766543  23454


Q ss_pred             eccCc------------cchhhc---cC---------------CC------Ccc----h-----h--hhccCCcccEEEE
Q psy16116        411 TKANG------------EDFINV---AG---------------GN------NNE----A-----Q--AFLTRGAQVIIRM  443 (612)
Q Consensus       411 ~~s~~------------~e~~~~---~g---------------~~------~~e----~-----~--~~~~~~~~~~VfV  443 (612)
                      ..+.-            +++.+.   .|               +.      ...    .     .  .........+|.|
T Consensus       223 d~Sklt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllv  302 (492)
T KOG1190|consen  223 DFSKLTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLV  302 (492)
T ss_pred             ehhhcccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEE
Confidence            33321            111110   01               00      000    0     0  0000012467888


Q ss_pred             eCCC-CCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEEEEEEec
Q psy16116        444 RGLP-YECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRYIELFRS  521 (612)
Q Consensus       444 ~nLP-~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~IeV~~a  521 (612)
                      .||- +.+|.+-|-.+|.-||        .+.+|+|.+++.    --|.|.+.+...|+.|++ ++|+.+.|+.|+|..+
T Consensus       303 snln~~~VT~d~LftlFgvYG--------dVqRVkil~nkk----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~S  370 (492)
T KOG1190|consen  303 SNLNEEAVTPDVLFTLFGVYG--------DVQRVKILYNKK----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLS  370 (492)
T ss_pred             ecCchhccchhHHHHHHhhhc--------ceEEEEeeecCC----cceeeeecchhHHHHHHHHhhcceecCceEEEeec
Confidence            8875 5589999999999999        457899986542    469999999999999997 7999999999999988


Q ss_pred             chHHHHHHhhhhcCCCCCCCCCCCCCCCCCcccccccccCCC--CCCCCccccc-C-CCcccEEEEcCCCccCCHHHHHH
Q psy16116        522 TTAEVQQVLNKTMELPKNNSLTSSNNGLSAQQPMLSHLAQVP--VPYLPQHIIT-S-GTRKDCIRLRGLPYEALCILMDI  597 (612)
Q Consensus       522 s~~e~~~~~~~~~~~~~~~~~~~e~~~~s~~~~~~~~~s~~p--~~~~~~~~~~-~-~~~~~~VfVrNLPf~vTeeDLke  597 (612)
                      ....+.-  .+.+      ++   .+|..      ......|  +.+++..+.. . -....++++.|+|.+++||||++
T Consensus       371 KH~~vql--p~eg------q~---d~glT------~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~  433 (492)
T KOG1190|consen  371 KHTNVQL--PREG------QE---DQGLT------KDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKN  433 (492)
T ss_pred             cCccccC--CCCC------Cc---ccccc------ccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHH
Confidence            7655431  1100      00   00000      0001111  1111111110 1 13456899999999999999999


Q ss_pred             hhccCC
Q psy16116        598 FFVGQQ  603 (612)
Q Consensus       598 fFs~~g  603 (612)
                      .|..-|
T Consensus       434 ~f~~~g  439 (492)
T KOG1190|consen  434 LFQEPG  439 (492)
T ss_pred             hhhcCC
Confidence            998753

>KOG1190|consensus

Probab=98.34  E-value=7.5e-06  Score=87.63  Aligned_cols=168  Identities=15%  Similarity=0.184  Sum_probs=116.1

Q ss_pred             cccceecCCCHHHH-HhhHhhccc-ccCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCc
Q psy16116        339 ALCPLVQNIWLSLL-LNTIPGYEQ-VLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANG  415 (612)
Q Consensus       339 ~l~vlV~nLp~~~~-e~~fkeff~-~~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~  415 (612)
                      .+.++|.||-.+.+ .+-+--.|. -|.+..|+|++++.    --|.|.+.+...|+-|+. ++++.|-|+.|+|..+..
T Consensus       297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH  372 (492)
T KOG1190|consen  297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKH  372 (492)
T ss_pred             ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC----cceeeeecchhHHHHHHHHhhcceecCceEEEeeccC
Confidence            44667777766543 333333333 35688899987643    479999999999999997 899999999999988765


Q ss_pred             cchhhccCCCCc-----c-----hhhhcc---------CCcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeE
Q psy16116        416 EDFINVAGGNNN-----E-----AQAFLT---------RGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGV  476 (612)
Q Consensus       416 ~e~~~~~g~~~~-----e-----~~~~~~---------~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I  476 (612)
                      ....-...+...     .     -..|.+         -....++++.|+|.+++|+|+++.|.+.|-    .   ++.-
T Consensus       373 ~~vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~----~---vkaf  445 (492)
T KOG1190|consen  373 TNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGG----Q---VKAF  445 (492)
T ss_pred             ccccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCc----e---EEee
Confidence            433211111000     0     001110         134568999999999999999999999881    1   1111


Q ss_pred             EEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCcccCCE-EEEEEec
Q psy16116        477 LFVKKPDGKATGDAFVLFEKEEEADKAL-SKHKESIGIR-YIELFRS  521 (612)
Q Consensus       477 ~i~~d~~GrskG~AFV~F~s~edA~kAL-~~~~~~iggR-~IeV~~a  521 (612)
                      .+    -++.+-+|++.+.+.|+|-.|| .+|.+.+|+- .++|.-+
T Consensus       446 kf----f~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFS  488 (492)
T KOG1190|consen  446 KF----FQKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFS  488 (492)
T ss_pred             ee----cCCCcceeecccCChhHhhhhccccccccCCCCceEEEEee
Confidence            11    3456679999999999999999 4788888865 6777654

>KOG0121|consensus

Probab=98.33  E-value=4.8e-07  Score=83.31  Aligned_cols=78  Identities=15%  Similarity=0.129  Sum_probs=66.0

Q ss_pred             CCCcccceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCC-CCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEec
Q psy16116        336 NPVALCPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFG-RRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTK  412 (612)
Q Consensus       336 ~~~~l~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~G-rsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~  412 (612)
                      +..+++|+|+||++-++|+.|-++|.. +.+..|.|-.|+.. ..-|||||+|-+.+||+.||+ .++..|+.|.|.+-+
T Consensus        33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~  112 (153)
T KOG0121|consen   33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW  112 (153)
T ss_pred             HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence            345678889999999999888887776 56888888888764 568999999999999999998 799999999999954


Q ss_pred             c
Q psy16116        413 A  413 (612)
Q Consensus       413 s  413 (612)
                      .
T Consensus       113 D  113 (153)
T KOG0121|consen  113 D  113 (153)
T ss_pred             c
Confidence            3

>KOG0113|consensus

Probab=98.33  E-value=8.4e-07  Score=91.57  Aligned_cols=72  Identities=17%  Similarity=0.135  Sum_probs=60.2

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEec
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTK  412 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~  412 (612)
                      ++||.-|++++.|..|+..|.. +.|..|+|+.|+ +|+++|||||+|+++-|...|-+ .++..|+||.|-|-.
T Consensus       103 TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv  177 (335)
T KOG0113|consen  103 TLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV  177 (335)
T ss_pred             eeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence            6667777777777777766655 569999999996 79999999999999999999997 789999999887743

>KOG4207|consensus

Probab=98.33  E-value=3.7e-07  Score=90.02  Aligned_cols=74  Identities=22%  Similarity=0.175  Sum_probs=63.4

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccC
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKAN  414 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~  414 (612)
                      .+.|-||++.++-++|+..|+. +.+.+|.|..|. ++.++|||||.|....||+.||+ +++..++||.|.|..+.
T Consensus        15 SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar   91 (256)
T KOG4207|consen   15 SLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR   91 (256)
T ss_pred             eEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence            4557899998888888777766 558999999987 47789999999999999999997 89999999999997664

>KOG4454|consensus

Probab=98.29  E-value=2.8e-07  Score=91.58  Aligned_cols=131  Identities=18%  Similarity=0.140  Sum_probs=103.5

Q ss_pred             CCcccceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccC
Q psy16116        337 PVALCPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKAN  414 (612)
Q Consensus       337 ~~~l~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~  414 (612)
                      +.+.++||.|+.....|+.|.+.|.. +.|..|.|..++++..+ ||||.|+++-.+.-|++ +|+-.+-++.+.|..  
T Consensus         7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~--   83 (267)
T KOG4454|consen    7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTL--   83 (267)
T ss_pred             chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhccc--
Confidence            34456779999999999999999986 66888888888899888 99999999999999998 577777776655532  


Q ss_pred             ccchhhccCCCCcchhhhccCCcccEEEEeC----CCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEE
Q psy16116        415 GEDFINVAGGNNNEAQAFLTRGAQVIIRMRG----LPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDA  490 (612)
Q Consensus       415 ~~e~~~~~g~~~~e~~~~~~~~~~~~VfV~n----LP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~A  490 (612)
                                                 +-++    |...++++.+.+.|+..+        .++.+++..+.+||.+-++
T Consensus        84 ---------------------------r~G~shapld~r~~~ei~~~v~s~a~--------p~~~~R~~~~~d~rnrn~~  128 (267)
T KOG4454|consen   84 ---------------------------RCGNSHAPLDERVTEEILYEVFSQAG--------PIEGVRIPTDNDGRNRNFG  128 (267)
T ss_pred             ---------------------------ccCCCcchhhhhcchhhheeeecccC--------CCCCccccccccCCccCcc
Confidence                                       2222    445677888888898888        4577999999999999999


Q ss_pred             EEEeCCHHHHHHHHH
Q psy16116        491 FVLFEKEEEADKALS  505 (612)
Q Consensus       491 FV~F~s~edA~kAL~  505 (612)
                      ||.+--....=.|+.
T Consensus       129 ~~~~qr~~~~P~~~~  143 (267)
T KOG4454|consen  129 FVTYQRLCAVPFALD  143 (267)
T ss_pred             chhhhhhhcCcHHhh
Confidence            998766655555553

>KOG0533|consensus

Probab=98.28  E-value=2e-06  Score=87.85  Aligned_cols=82  Identities=16%  Similarity=0.253  Sum_probs=73.3

Q ss_pred             ccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEEE
Q psy16116        438 QVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRYI  516 (612)
Q Consensus       438 ~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~I  516 (612)
                      ...|.|.|||+.++++||+++|.++|        ..+.+-+-+|+.|++.|.|-|.|...+||.+|++ +++-.++|+.|
T Consensus        83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~--------~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~m  154 (243)
T KOG0533|consen   83 STKVNVSNLPYGVIDADLKELFAEFG--------ELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPM  154 (243)
T ss_pred             cceeeeecCCcCcchHHHHHHHHHhc--------cceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCcee
Confidence            36799999999999999999999998        4567888899999999999999999999999997 58899999999


Q ss_pred             EEEecchHHHH
Q psy16116        517 ELFRSTTAEVQ  527 (612)
Q Consensus       517 eV~~as~~e~~  527 (612)
                      .+..+...-+.
T Consensus       155 k~~~i~~~~~~  165 (243)
T KOG0533|consen  155 KIEIISSPSQS  165 (243)
T ss_pred             eeEEecCcccc
Confidence            99888655443

>KOG0106|consensus

Probab=98.26  E-value=1.5e-06  Score=87.27  Aligned_cols=126  Identities=15%  Similarity=0.142  Sum_probs=85.6

Q ss_pred             EEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCcccCCEEEEE
Q psy16116        440 IIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKAL-SKHKESIGIRYIEL  518 (612)
Q Consensus       440 ~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL-~~~~~~iggR~IeV  518 (612)
                      .+||++||+.+.+.||..||.++|    .|    ..|.+       ..||+||+|.+.-||+.|+ .+|+..|+|-.+.|
T Consensus         3 rv~vg~~~~~~~~~d~E~~f~~yg----~~----~d~~m-------k~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vv   67 (216)
T KOG0106|consen    3 RVYIGRLPYRARERDVERFFKGYG----KI----PDADM-------KNGFGFVEFEDPRDADDAVHDLDGKELCGERLVV   67 (216)
T ss_pred             ceeecccCCccchhHHHHHHhhcc----cc----cccee-------ecccceeccCchhhhhcccchhcCceecceeeee
Confidence            499999999999999999999999    33    22443       2479999999999999999 47888887766555


Q ss_pred             EecchHHHHHHhhhhcCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCcccccCCCcccEEEEcCCCccCCHHHHHHh
Q psy16116        519 FRSTTAEVQQVLNKTMELPKNNSLTSSNNGLSAQQPMLSHLAQVPVPYLPQHIITSGTRKDCIRLRGLPYEALCILMDIF  598 (612)
Q Consensus       519 ~~as~~e~~~~~~~~~~~~~~~~~~~e~~~~s~~~~~~~~~s~~p~~~~~~~~~~~~~~~~~VfVrNLPf~vTeeDLkef  598 (612)
                      ..+......      .+.+...++.+           + .....          ......+.+.|.||+-.+...||+..
T Consensus        68 e~~r~~~~~------~g~~~~g~r~~-----------~-~~~~~----------~p~~s~~r~~~~~~~~r~~~qdl~d~  119 (216)
T KOG0106|consen   68 EHARGKRRG------RGRPRGGDRRS-----------D-SRRYR----------PPSRTHFRLIVRNLSLRVSWQDLKDH  119 (216)
T ss_pred             ecccccccc------cCCCCCCCccc-----------h-hhccC----------CcccccceeeeccchhhhhHHHHhhh
Confidence            443211100      00010000000           0 00000          01235678999999999999999999


Q ss_pred             hccCCcEeEe
Q psy16116        599 FVGQQDSFVH  608 (612)
Q Consensus       599 Fs~~gdI~~~  608 (612)
                      |..+|.+..+
T Consensus       120 ~~~~g~~~~~  129 (216)
T KOG0106|consen  120 FRPAGEVTYV  129 (216)
T ss_pred             hcccCCCchh
Confidence            9999988554

>PF13893 RRM_5: RNA recognition motif

Probab=98.25  E-value=3.2e-06  Score=66.52  Aligned_cols=53  Identities=15%  Similarity=0.270  Sum_probs=43.8

Q ss_pred             HhhHhhcccccCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEec
Q psy16116        353 LNTIPGYEQVLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTK  412 (612)
Q Consensus       353 e~~fkeff~~~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~  412 (612)
                      .+.|+.||.   +.+|.+..+.    +|+|||+|.+.++|++|++ +|+..++|+.|+|..
T Consensus         2 ~~~f~~fG~---V~~i~~~~~~----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~   55 (56)
T PF13893_consen    2 YKLFSKFGE---VKKIKIFKKK----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSY   55 (56)
T ss_dssp             HHHHTTTS----EEEEEEETTS----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEE
T ss_pred             hHHhCCccc---EEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence            456667664   7888886543    6899999999999999997 899999999999964

(a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....

>KOG0120|consensus

Probab=98.25  E-value=2.3e-06  Score=95.02  Aligned_cols=139  Identities=15%  Similarity=0.152  Sum_probs=104.7

Q ss_pred             CCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccCccchhhc----cC---CCCcchhhhccCCcccEEEEeCCCCC
Q psy16116        377 RRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGEDFINV----AG---GNNNEAQAFLTRGAQVIIRMRGLPYE  449 (612)
Q Consensus       377 rsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~~~e~~~~----~g---~~~~e~~~~~~~~~~~~VfV~nLP~s  449 (612)
                      ..+.|||++|.+.++|..|+.+++..+.|+.+.+..-........    .+   .................++|+|||..
T Consensus       221 ~~~nfa~ie~~s~~~at~~~~~~~~~f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~  300 (500)
T KOG0120|consen  221 LEKNFAFIEFRSISEATEAMALDGIIFEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLY  300 (500)
T ss_pred             ccccceeEEecCCCchhhhhcccchhhCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCc
Confidence            456799999999999999999999989998887755433221100    00   00000000000123466999999999


Q ss_pred             CCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEEEEEEecch
Q psy16116        450 CTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIRYIELFRSTT  523 (612)
Q Consensus       450 ~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~IeV~~as~  523 (612)
                      .++..++|+...||        ....-+++.|. +|.++||||.+|-+....+.|++ +||..++++.+.|..+..
T Consensus       301 l~~~q~~Ell~~fg--------~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~  368 (500)
T KOG0120|consen  301 LTEDQVKELLDSFG--------PLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIV  368 (500)
T ss_pred             cCHHHHHHHHHhcc--------cchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhc
Confidence            99999999999999        34567788886 69999999999999999999997 899999999999887643

>KOG0129|consensus

Probab=98.21  E-value=1.4e-05  Score=87.75  Aligned_cols=132  Identities=18%  Similarity=0.172  Sum_probs=86.8

Q ss_pred             ceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccCccc-------hhhccCCCCcchhhhccCCcccEEEEeCCCCCCCH
Q psy16116        380 GEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGED-------FINVAGGNNNEAQAFLTRGAQVIIRMRGLPYECTA  452 (612)
Q Consensus       380 G~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~~~e-------~~~~~g~~~~e~~~~~~~~~~~~VfV~nLP~s~te  452 (612)
                      ||.|..|+++..++.-|..=-..-++-++.|...+-..       |.-.......+..  ..-...+||||++||--.+-
T Consensus       307 ~YvflvFe~E~sV~~Ll~aC~~~~~~~yf~vss~~~k~k~VQIrPW~laDs~fv~d~s--q~lDprrTVFVGgvprpl~A  384 (520)
T KOG0129|consen  307 GYVFLVFEDERSVQSLLSACSEGEGNYYFKVSSPTIKDKEVQIRPWVLADSDFVLDHN--QPIDPRRTVFVGGLPRPLTA  384 (520)
T ss_pred             cEEEEEecchHHHHHHHHHHhhcccceEEEEecCcccccceeEEeeEeccchhhhccC--cccCccceEEecCCCCcchH
Confidence            39999999999998887521113333444443222111       1110000000000  01125689999999999999


Q ss_pred             HHHHHHHh-cCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHHh-----CCcccCCEEEEEEecc
Q psy16116        453 KQVIDFFE-AGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALSK-----HKESIGIRYIELFRST  522 (612)
Q Consensus       453 ~dLrefF~-~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~~-----~~~~iggR~IeV~~as  522 (612)
                      ++|-.+|+ .||        ++.-+-|-+|+ -+-++|-|=|+|.+....-+||+.     +...+. +.|||++--
T Consensus       385 ~eLA~imd~lyG--------gV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsarFvql~h~d~~-KRVEIkPYv  452 (520)
T KOG0129|consen  385 EELAMIMEDLFG--------GVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISARFVQLDHTDID-KRVEIKPYV  452 (520)
T ss_pred             HHHHHHHHHhcC--------ceEEEEeccCcccCCCCCcceeeecccHHHHHHHhhheEEEeccccc-eeeeeccee
Confidence            99999999 577        45667888884 577999999999999999999974     334444 467887754

>KOG0116|consensus

Probab=98.16  E-value=4e-06  Score=91.83  Aligned_cols=76  Identities=24%  Similarity=0.339  Sum_probs=63.6

Q ss_pred             cEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCcccCCEEEEE
Q psy16116        439 VIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALSKHKESIGIRYIEL  518 (612)
Q Consensus       439 ~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~~~~~~iggR~IeV  518 (612)
                      ..|||+|||++++.++|+++|+.||    .|  ...+|.+.. +.++...||||+|.+.++++.||+.+...+|+|.+.|
T Consensus       289 ~~i~V~nlP~da~~~~l~~~Fk~FG----~I--k~~~I~vr~-~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~V  361 (419)
T KOG0116|consen  289 LGIFVKNLPPDATPAELEEVFKQFG----PI--KEGGIQVRS-PGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNV  361 (419)
T ss_pred             cceEeecCCCCCCHHHHHHHHhhcc----cc--cccceEEec-cCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEE
Confidence            4499999999999999999999999    45  334444433 4555559999999999999999999999999999999


Q ss_pred             Eec
Q psy16116        519 FRS  521 (612)
Q Consensus       519 ~~a  521 (612)
                      ..-
T Consensus       362 eek  364 (419)
T KOG0116|consen  362 EEK  364 (419)
T ss_pred             Eec
Confidence            753

>KOG4209|consensus

Probab=98.15  E-value=2.8e-06  Score=86.53  Aligned_cols=78  Identities=21%  Similarity=0.188  Sum_probs=70.5

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHHhCCcccCCEE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALSKHKESIGIRY  515 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~~~~~~iggR~  515 (612)
                      ....+||+|+.+.++.+++...|+.||        .+..|.++.|. .|.+||||||+|.+.+.+.+||.+|+..|.|+.
T Consensus       100 d~~sv~v~nvd~~~t~~~~e~hf~~Cg--------~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~  171 (231)
T KOG4209|consen  100 DAPSVWVGNVDFLVTLTKIELHFESCG--------GINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPA  171 (231)
T ss_pred             CCceEEEeccccccccchhhheeeccC--------CccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCccccccc
Confidence            345699999999999999999999999        55778999998 567999999999999999999999999999999


Q ss_pred             EEEEecc
Q psy16116        516 IELFRST  522 (612)
Q Consensus       516 IeV~~as  522 (612)
                      |+|....
T Consensus       172 i~vt~~r  178 (231)
T KOG4209|consen  172 IEVTLKR  178 (231)
T ss_pred             ceeeeee
Confidence            9997643

>KOG0146|consensus

Probab=98.13  E-value=7.9e-05  Score=76.24  Aligned_cols=78  Identities=8%  Similarity=0.018  Sum_probs=59.0

Q ss_pred             CCCcccceecCCCHHHHHhhHhhccc-ccCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEec
Q psy16116        336 NPVALCPLVQNIWLSLLLNTIPGYEQ-VLGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTK  412 (612)
Q Consensus       336 ~~~~l~vlV~nLp~~~~e~~fkeff~-~~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~  412 (612)
                      .|+.+-+||.-||.+-.+..+-..|. ++.+.+.++..|+ +..|+.||||.|.+..+++.||+ +||-.||-+.++|..
T Consensus       282 GPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQL  361 (371)
T KOG0146|consen  282 GPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQL  361 (371)
T ss_pred             CCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhh
Confidence            35555566888887766555554443 3567777777776 56899999999999999999997 899889988777754


Q ss_pred             c
Q psy16116        413 A  413 (612)
Q Consensus       413 s  413 (612)
                      -
T Consensus       362 K  362 (371)
T KOG0146|consen  362 K  362 (371)
T ss_pred             c
Confidence            3

>KOG0120|consensus

Probab=98.10  E-value=1.9e-05  Score=87.78  Aligned_cols=170  Identities=14%  Similarity=0.126  Sum_probs=108.2

Q ss_pred             CCCHHHHHhhHhhcccccCeeeEEEeeCCC-CCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCccchhhccC
Q psy16116        346 NIWLSLLLNTIPGYEQVLGLGGVALCLSAF-GRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGEDFINVAG  423 (612)
Q Consensus       346 nLp~~~~e~~fkeff~~~~v~~V~ii~d~~-GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~e~~~~~g  423 (612)
                      ++..+.+.+.+..|+.   .....++.|.. |.++||||-+|.+....+.|+. +||..++++.+-|..+..........
T Consensus       300 ~l~~~q~~Ell~~fg~---lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~~~~~  376 (500)
T KOG0120|consen  300 YLTEDQVKELLDSFGP---LKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASNANVN  376 (500)
T ss_pred             ccCHHHHHHHHHhccc---chhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchhcccc
Confidence            3444667777776664   55666666654 8999999999999999999997 89999999998886664322111000


Q ss_pred             CC-Cc-ch---hh---hccCCcccEEEEeC------CCCCCCH----HHHHHHHhcCCCCccccccCceeEEEeeC-CC-
Q psy16116        424 GN-NN-EA---QA---FLTRGAQVIIRMRG------LPYECTA----KQVIDFFEAGTENSCNVMDGEEGVLFVKK-PD-  483 (612)
Q Consensus       424 ~~-~~-e~---~~---~~~~~~~~~VfV~n------LP~s~te----~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d-~~-  483 (612)
                      .. +. ..   ..   ........+|.+.|      |-++..-    +|++.=+.+||        .+..|.|+.+ .+ 
T Consensus       377 ~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g--------~v~~v~ipr~~~~~  448 (500)
T KOG0120|consen  377 FNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFG--------AVRSVEIPRPYPDE  448 (500)
T ss_pred             CCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccC--------ceeEEecCCCCCCC
Confidence            00 00 00   00   00001122233322      2233322    23344456777        3456788766 32 


Q ss_pred             --CCceeEEEEEeCCHHHHHHHHH-hCCcccCCEEEEEEecchHHH
Q psy16116        484 --GKATGDAFVLFEKEEEADKALS-KHKESIGIRYIELFRSTTAEV  526 (612)
Q Consensus       484 --GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~IeV~~as~~e~  526 (612)
                        .-..|--||+|++.+++++|++ ++|.++++|.|-........+
T Consensus       449 ~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYydeDkY  494 (500)
T KOG0120|consen  449 NPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDEDKY  494 (500)
T ss_pred             CcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCHHHh
Confidence              4568999999999999999995 899999999987777665443

>KOG0107|consensus

Probab=98.08  E-value=8.2e-06  Score=78.89  Aligned_cols=72  Identities=19%  Similarity=0.092  Sum_probs=51.8

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCcc
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGE  416 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~  416 (612)
                      .|+|+||+..+++.+|+..|.. +.+.+|-|-.+    .-|||||||++..||+.|+. +|+..|.|..|.|..++..
T Consensus        12 kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~   85 (195)
T KOG0107|consen   12 KVYVGNLGSRATKRELERAFSKYGPLRSVWVARN----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGR   85 (195)
T ss_pred             eEEeccCCCCcchHHHHHHHHhcCcceeEEEeec----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCC
Confidence            3445555555544444433332 34677777553    56899999999999999997 8999999999999877653

>KOG0415|consensus

Probab=98.07  E-value=5.6e-06  Score=87.15  Aligned_cols=77  Identities=18%  Similarity=0.144  Sum_probs=70.8

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHH-HhCCcccCCE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKAL-SKHKESIGIR  514 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL-~~~~~~iggR  514 (612)
                      ...+|||.-|..-++++||.-.|+.||        .+.++.|+.|. +|-+--||||+|++.++.++|. +|++-.|+.|
T Consensus       238 PeNVLFVCKLNPVTtDeDLeiIFSrFG--------~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDr  309 (479)
T KOG0415|consen  238 PENVLFVCKLNPVTTDEDLEIIFSRFG--------KIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDR  309 (479)
T ss_pred             CcceEEEEecCCcccccchhhHHhhcc--------cceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccc
Confidence            457899999999999999999999999        44678999887 8999999999999999999999 7899999999


Q ss_pred             EEEEEec
Q psy16116        515 YIELFRS  521 (612)
Q Consensus       515 ~IeV~~a  521 (612)
                      .|.|.-+
T Consensus       310 RIHVDFS  316 (479)
T KOG0415|consen  310 RIHVDFS  316 (479)
T ss_pred             eEEeehh
Confidence            9999876

>KOG0111|consensus

Probab=98.06  E-value=4.4e-06  Score=83.16  Aligned_cols=76  Identities=16%  Similarity=0.106  Sum_probs=63.6

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCcc
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGE  416 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~  416 (612)
                      +++|++|..+.++..|..-|.. +.+.+|.+..|. ++++||||||+|.-.|||.+|+. +|...+-||.|+|..+...
T Consensus        12 tlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~AkP~   90 (298)
T KOG0111|consen   12 TLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAKPE   90 (298)
T ss_pred             eEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecCCc
Confidence            4447788888888888866654 668999998885 58999999999999999999997 8889999999999877543

>KOG0126|consensus

Probab=98.05  E-value=1e-06  Score=85.42  Aligned_cols=79  Identities=16%  Similarity=0.080  Sum_probs=68.1

Q ss_pred             CCCcccceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEec
Q psy16116        336 NPVALCPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTK  412 (612)
Q Consensus       336 ~~~~l~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~  412 (612)
                      ..++.+++|+|||++-+|.++--.|.. +.+.+|.+++|+ +|+|+||||..|++...--.|+. +||-.|.||.|+|-.
T Consensus        32 YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDH  111 (219)
T KOG0126|consen   32 YKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDH  111 (219)
T ss_pred             cccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeee
Confidence            456789999999999999887766655 558999999997 59999999999999999999996 899999999999955


Q ss_pred             cC
Q psy16116        413 AN  414 (612)
Q Consensus       413 s~  414 (612)
                      ..
T Consensus       112 v~  113 (219)
T KOG0126|consen  112 VS  113 (219)
T ss_pred             cc
Confidence            43

>KOG4661|consensus

Probab=98.02  E-value=9.8e-06  Score=89.38  Aligned_cols=80  Identities=20%  Similarity=0.246  Sum_probs=69.6

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIR  514 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR  514 (612)
                      .++.|+|.||...+--.||+++|++||    .|    .+.+|+.+. +-..+.||||++.+.++|.++|+ +|+..|.||
T Consensus       404 ~gRNlWVSGLSstTRAtDLKnlFSKyG----KV----vGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGr  475 (940)
T KOG4661|consen  404 LGRNLWVSGLSSTTRATDLKNLFSKYG----KV----VGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGR  475 (940)
T ss_pred             cccceeeeccccchhhhHHHHHHHHhc----ce----eceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcce
Confidence            467799999999999999999999999    34    468888775 43468899999999999999997 799999999


Q ss_pred             EEEEEecchH
Q psy16116        515 YIELFRSTTA  524 (612)
Q Consensus       515 ~IeV~~as~~  524 (612)
                      .|.|.++..+
T Consensus       476 mISVEkaKNE  485 (940)
T KOG4661|consen  476 MISVEKAKNE  485 (940)
T ss_pred             eeeeeecccC
Confidence            9999987543

>KOG0153|consensus

Probab=98.01  E-value=1.2e-05  Score=84.64  Aligned_cols=74  Identities=23%  Similarity=0.235  Sum_probs=65.1

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHHh--CCcccCCE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALSK--HKESIGIR  514 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~~--~~~~iggR  514 (612)
                      .-.+|||+||-..++|.||+++|..||        ++++|++..     .+|.|||+|.+.+.|++|.++  ++-.|+|+
T Consensus       227 ~I~tLyIg~l~d~v~e~dIrdhFyqyG--------eirsi~~~~-----~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~  293 (377)
T KOG0153|consen  227 SIKTLYIGGLNDEVLEQDIRDHFYQYG--------EIRSIRILP-----RKGCAFVTFTTREAAEKAAEKSFNKLVINGF  293 (377)
T ss_pred             ceeEEEecccccchhHHHHHHHHhhcC--------CeeeEEeec-----ccccceeeehhhHHHHHHHHhhcceeeecce
Confidence            457899999999999999999999999        567788863     346999999999999999974  88899999


Q ss_pred             EEEEEecch
Q psy16116        515 YIELFRSTT  523 (612)
Q Consensus       515 ~IeV~~as~  523 (612)
                      .|.|.....
T Consensus       294 Rl~i~Wg~~  302 (377)
T KOG0153|consen  294 RLKIKWGRP  302 (377)
T ss_pred             EEEEEeCCC
Confidence            999998765

>KOG0132|consensus

Probab=97.98  E-value=1.3e-05  Score=91.25  Aligned_cols=75  Identities=17%  Similarity=0.340  Sum_probs=66.5

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRY  515 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~  515 (612)
                      -++||||++|+..++|.||+++|+.||        ++++|.+.     -++|.|||.+.+-.||.+||. +++..+.++.
T Consensus       420 ~SrTLwvG~i~k~v~e~dL~~~feefG--------eiqSi~li-----~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~  486 (894)
T KOG0132|consen  420 CSRTLWVGGIPKNVTEQDLANLFEEFG--------EIQSIILI-----PPRGCAFIKMVRRQDAEKALQKLSNVKVADKT  486 (894)
T ss_pred             eeeeeeeccccchhhHHHHHHHHHhcc--------cceeEeec-----cCCceeEEEEeehhHHHHHHHHHhccccccee
Confidence            468999999999999999999999999        45677775     478999999999999999996 6889999999


Q ss_pred             EEEEecchH
Q psy16116        516 IELFRSTTA  524 (612)
Q Consensus       516 IeV~~as~~  524 (612)
                      |+|.++..+
T Consensus       487 Iki~Wa~g~  495 (894)
T KOG0132|consen  487 IKIAWAVGK  495 (894)
T ss_pred             eEEeeeccC
Confidence            999988543

>KOG0129|consensus

Probab=97.94  E-value=3.8e-05  Score=84.57  Aligned_cols=136  Identities=18%  Similarity=0.233  Sum_probs=82.1

Q ss_pred             ccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC--CCC--cee---EEEEEeCCHHHHHHHHHh-CCc
Q psy16116        438 QVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP--DGK--ATG---DAFVLFEKEEEADKALSK-HKE  509 (612)
Q Consensus       438 ~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~--~Gr--skG---~AFV~F~s~edA~kAL~~-~~~  509 (612)
                      .+.|||+||||+++|+.|...|..||    .+     .|..+...  .++  .+|   |.|..|+++..+..-|.- .. 
T Consensus       259 S~KVFvGGlp~dise~~i~~~F~~FG----s~-----~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~-  328 (520)
T KOG0129|consen  259 SRKVFVGGLPWDITEAQINASFGQFG----SV-----KVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE-  328 (520)
T ss_pred             ccceeecCCCccccHHHHHhhccccc----ce-----EeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh-
Confidence            46799999999999999999999999    22     13444221  232  567   999999999999887742 21 


Q ss_pred             ccCCEEEEEEecchHHHHHHhhhhcCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCcccccCCCcccEEEEcCCCcc
Q psy16116        510 SIGIRYIELFRSTTAEVQQVLNKTMELPKNNSLTSSNNGLSAQQPMLSHLAQVPVPYLPQHIITSGTRKDCIRLRGLPYE  589 (612)
Q Consensus       510 ~iggR~IeV~~as~~e~~~~~~~~~~~~~~~~~~~e~~~~s~~~~~~~~~s~~p~~~~~~~~~~~~~~~~~VfVrNLPf~  589 (612)
                      .-++-++.|..-+-+++  .++     ..+...... +        +-....           ..-...+||||++||--
T Consensus       329 ~~~~~yf~vss~~~k~k--~VQ-----IrPW~laDs-~--------fv~d~s-----------q~lDprrTVFVGgvprp  381 (520)
T KOG0129|consen  329 GEGNYYFKVSSPTIKDK--EVQ-----IRPWVLADS-D--------FVLDHN-----------QPIDPRRTVFVGGLPRP  381 (520)
T ss_pred             cccceEEEEecCccccc--cee-----EEeeEeccc-h--------hhhccC-----------cccCccceEEecCCCCc
Confidence            22223343332221111  000     000000000 0        000000           01235679999999999


Q ss_pred             CCHHHHHHhhcc-CCcEeEeeC
Q psy16116        590 ALCILMDIFFVG-QQDSFVHKV  610 (612)
Q Consensus       590 vTeeDLkefFs~-~gdI~~~ki  610 (612)
                      +|.++|-.+|++ ||-|.++-|
T Consensus       382 l~A~eLA~imd~lyGgV~yaGI  403 (520)
T KOG0129|consen  382 LTAEELAMIMEDLFGGVLYVGI  403 (520)
T ss_pred             chHHHHHHHHHHhcCceEEEEe
Confidence            999999999996 677766543

>KOG1548|consensus

Probab=97.87  E-value=3.7e-05  Score=81.02  Aligned_cols=84  Identities=19%  Similarity=0.304  Sum_probs=70.4

Q ss_pred             cEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEEEE
Q psy16116        439 VIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRYIE  517 (612)
Q Consensus       439 ~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~Ie  517 (612)
                      ..|||.|||-++|.+++.++|++||+=--.+-.+.-.|+|..+..|+.+|.|.+.|-..|+++.|++ +++..++|+.|+
T Consensus       135 t~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~~r  214 (382)
T KOG1548|consen  135 TSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKKLR  214 (382)
T ss_pred             ceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcEEE
Confidence            4599999999999999999999999400011112335788888899999999999999999999998 699999999999


Q ss_pred             EEecc
Q psy16116        518 LFRST  522 (612)
Q Consensus       518 V~~as  522 (612)
                      |..+.
T Consensus       215 VerAk  219 (382)
T KOG1548|consen  215 VERAK  219 (382)
T ss_pred             Eehhh
Confidence            98875

>KOG0114|consensus

Probab=97.87  E-value=2.8e-05  Score=69.50  Aligned_cols=74  Identities=15%  Similarity=0.120  Sum_probs=55.7

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCcc
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGE  416 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~  416 (612)
                      -++|+|||++.+.+...+.|.. +.+..|++-..+  .-+|.|||.+++..||++|+. +++..+.+|++.|-.-+..
T Consensus        20 iLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k--~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~~   95 (124)
T KOG0114|consen   20 ILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK--ETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQPE   95 (124)
T ss_pred             eEEEecCCccccHHHHHHHhhcccceEEEEecCcc--CcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCHH
Confidence            3457777777666665554433 558888885543  358999999999999999997 8999999999998655443

>KOG4208|consensus

Probab=97.87  E-value=2.7e-05  Score=77.10  Aligned_cols=68  Identities=18%  Similarity=0.201  Sum_probs=54.1

Q ss_pred             CCHHHHHhhHhhcccccCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCcc
Q psy16116        347 IWLSLLLNTIPGYEQVLGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGE  416 (612)
Q Consensus       347 Lp~~~~e~~fkeff~~~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~  416 (612)
                      +-...+..+|+.|+  +.+..+++.+++ +|.|+|||||+|+++|.|+-|-+ +|+..|+++.+++.....+
T Consensus        61 ~~e~~~~~~~~q~~--g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vmppe  130 (214)
T KOG4208|consen   61 FFETEILNYFRQFG--GTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVMPPE  130 (214)
T ss_pred             hhHHHHhhhhhhcC--CeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEeCch
Confidence            33466777777775  357778887775 69999999999999999999996 8999999998888665443

>KOG0130|consensus

Probab=97.72  E-value=3.4e-05  Score=71.91  Aligned_cols=73  Identities=14%  Similarity=0.083  Sum_probs=57.2

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEecc
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKA  413 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s  413 (612)
                      .+||.++-.+++++++.+.|.. +.+++|++-.|. +|-.+|||.|+|++.++|++|+. +|+..|.|..|.|-++
T Consensus        74 Ii~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~  149 (170)
T KOG0130|consen   74 IIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWC  149 (170)
T ss_pred             EEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEE
Confidence            3456666666666666654433 458999998876 58889999999999999999996 8889999999999655

>KOG1456|consensus

Probab=97.57  E-value=0.0088  Score=64.08  Aligned_cols=167  Identities=14%  Similarity=0.111  Sum_probs=110.9

Q ss_pred             CCCCCcccceecCCCHHHH--HhhHhhcccccCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEE
Q psy16116        334 PGNPVALCPLVQNIWLSLL--LNTIPGYEQVLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEV  410 (612)
Q Consensus       334 ~~~~~~l~vlV~nLp~~~~--e~~fkeff~~~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV  410 (612)
                      .+......++|.+|.-...  ...|.-|-.-+.+..|++++.+.    |.|.|++.+.+++++|++ +++..+-|..|+|
T Consensus       282 ~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~----gtamVemgd~~aver~v~hLnn~~lfG~kl~v  357 (494)
T KOG1456|consen  282 GGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKP----GTAMVEMGDAYAVERAVTHLNNIPLFGGKLNV  357 (494)
T ss_pred             CCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeeccc----ceeEEEcCcHHHHHHHHHHhccCccccceEEE
Confidence            3455565677888865443  22222222224588999988765    699999999999999998 7887777777888


Q ss_pred             eccCccchh------hccCCCC------cchhhhcc---------CCcccEEEEeCCCCCCCHHHHHHHHhcCCCCcccc
Q psy16116        411 TKANGEDFI------NVAGGNN------NEAQAFLT---------RGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNV  469 (612)
Q Consensus       411 ~~s~~~e~~------~~~g~~~------~e~~~~~~---------~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~I  469 (612)
                      ..+...-..      -..++.+      .+...|.+         ...+.+|+.-|.|..+||+.|.++|.+.++     
T Consensus       358 ~~SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v-----  432 (494)
T KOG1456|consen  358 CVSKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDV-----  432 (494)
T ss_pred             eeccccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcCC-----
Confidence            666442111      1111110      01111211         135788999999999999999999998874     


Q ss_pred             ccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHHh-CCcccC
Q psy16116        470 MDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALSK-HKESIG  512 (612)
Q Consensus       470 vd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~~-~~~~ig  512 (612)
                        ...+|+|...++-|+ --|.++|++.++|..||.+ |...|.
T Consensus       433 --~~~svkvFp~kserS-ssGllEfe~~s~Aveal~~~NH~pi~  473 (494)
T KOG1456|consen  433 --PPTSVKVFPLKSERS-SSGLLEFENKSDAVEALMKLNHYPIE  473 (494)
T ss_pred             --CcceEEeeccccccc-ccceeeeehHHHHHHHHHHhcccccc
Confidence              234677765544443 4589999999999999964 555554

>KOG0226|consensus

Probab=97.55  E-value=3.9e-05  Score=78.06  Aligned_cols=80  Identities=11%  Similarity=0.108  Sum_probs=56.4

Q ss_pred             CcccceecCCCHHHHHhhHhhcccccC-eeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccC
Q psy16116        338 VALCPLVQNIWLSLLLNTIPGYEQVLG-LGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKAN  414 (612)
Q Consensus       338 ~~l~vlV~nLp~~~~e~~fkeff~~~~-v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~  414 (612)
                      ++.++|.+.|.-+...+.+..-|..+. -...++++++ +|+++|||||.|.+.+|+..|++ ++++++|.|.|...++.
T Consensus       189 ~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS~  268 (290)
T KOG0226|consen  189 DDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKSE  268 (290)
T ss_pred             ccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhhh
Confidence            355666666654444444433332211 2234556665 69999999999999999999996 89999999999998877


Q ss_pred             ccc
Q psy16116        415 GED  417 (612)
Q Consensus       415 ~~e  417 (612)
                      +++
T Consensus       269 wke  271 (290)
T KOG0226|consen  269 WKE  271 (290)
T ss_pred             HHh
Confidence            654

>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2

Probab=97.55  E-value=0.0007  Score=60.27  Aligned_cols=82  Identities=13%  Similarity=0.122  Sum_probs=63.1

Q ss_pred             cEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccC----
Q psy16116        439 VIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIG----  512 (612)
Q Consensus       439 ~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~ig----  512 (612)
                      .+|.|||+|-..|.++|.+.+.+..-      +.-+-+-++.|. ++.+.|||||-|.+++++.+-.+ .+|....    
T Consensus         2 TTvMirNIPn~~t~~~L~~~l~~~~~------g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s   75 (97)
T PF04059_consen    2 TTVMIRNIPNKYTQEMLIQILDEHFK------GKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNS   75 (97)
T ss_pred             eeEEEecCCCCCCHHHHHHHHHHhcc------CcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCC
Confidence            57999999999999999999976431      134557778886 67799999999999999998886 4776554    


Q ss_pred             CEEEEEEecchHHH
Q psy16116        513 IRYIELFRSTTAEV  526 (612)
Q Consensus       513 gR~IeV~~as~~e~  526 (612)
                      .+.++|..|.-+..
T Consensus        76 ~Kvc~i~yAriQG~   89 (97)
T PF04059_consen   76 KKVCEISYARIQGK   89 (97)
T ss_pred             CcEEEEehhHhhCH
Confidence            45577777654433

It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).

>KOG1456|consensus

Probab=97.52  E-value=0.0078  Score=64.45  Aligned_cols=141  Identities=15%  Similarity=0.143  Sum_probs=92.1

Q ss_pred             cccEEEEeCCCCC-CCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCE
Q psy16116        437 AQVIIRMRGLPYE-CTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIR  514 (612)
Q Consensus       437 ~~~~VfV~nLP~s-~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR  514 (612)
                      .+.++.|-||.-. ..-+.|-++|--||        .+++|++++.+    .|-|.|++.+..++++|+. +++..+-|.
T Consensus       286 ~g~VmMVyGLdh~k~N~drlFNl~ClYG--------NV~rvkFmkTk----~gtamVemgd~~aver~v~hLnn~~lfG~  353 (494)
T KOG1456|consen  286 PGCVMMVYGLDHGKMNCDRLFNLFCLYG--------NVERVKFMKTK----PGTAMVEMGDAYAVERAVTHLNNIPLFGG  353 (494)
T ss_pred             CCcEEEEEeccccccchhhhhhhhhhcC--------ceeeEEEeecc----cceeEEEcCcHHHHHHHHHHhccCccccc
Confidence            5788999999887 45678999999999        45789999764    4689999999999999996 688888888


Q ss_pred             EEEEEecchHHHHHHhhhhc---CCCCCCCCCCCCCCCCCcccccccccCCCCCCCCcccccCCCcccEEEEcCCCccCC
Q psy16116        515 YIELFRSTTAEVQQVLNKTM---ELPKNNSLTSSNNGLSAQQPMLSHLAQVPVPYLPQHIITSGTRKDCIRLRGLPYEAL  591 (612)
Q Consensus       515 ~IeV~~as~~e~~~~~~~~~---~~~~~~~~~~e~~~~s~~~~~~~~~s~~p~~~~~~~~~~~~~~~~~VfVrNLPf~vT  591 (612)
                      +|+|..+...-+... +...   ..+.-.+-..+.+      -.+.+    |.+....+.+   ....+|+.-|-|-.+|
T Consensus       354 kl~v~~SkQ~~v~~~-~pflLpDgSpSfKdys~SkN------nRFss----p~qAsKNrIq---~Ps~vLHffNaP~~vt  419 (494)
T KOG1456|consen  354 KLNVCVSKQNFVSPV-QPFLLPDGSPSFKDYSGSKN------NRFSS----PEQASKNRIQ---PPSNVLHFFNAPLGVT  419 (494)
T ss_pred             eEEEeeccccccccC-CceecCCCCcchhhcccccc------cccCC----hhHhhccccc---CCcceeEEecCCCccC
Confidence            899877654322211 1100   0000000000000      01111    1111112221   3467899999999999


Q ss_pred             HHHHHHhhccCC
Q psy16116        592 CILMDIFFVGQQ  603 (612)
Q Consensus       592 eeDLkefFs~~g  603 (612)
                      ||.|.++|....
T Consensus       420 Ee~l~~i~nek~  431 (494)
T KOG1456|consen  420 EEQLIGICNEKD  431 (494)
T ss_pred             HHHHHHHhhhcC
Confidence            999999997753

>KOG4454|consensus

Probab=97.44  E-value=4.9e-05  Score=75.87  Aligned_cols=76  Identities=11%  Similarity=0.059  Sum_probs=67.2

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRY  515 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~  515 (612)
                      .+++|||.|+-..++|+-|.++|-..|        .+-.|.|+.+++++.+ ||||.|.++-.+.-|++ +|+-.+.++.
T Consensus         8 ~drtl~v~n~~~~v~eelL~ElfiqaG--------PV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e   78 (267)
T KOG4454|consen    8 MDRTLLVQNMYSGVSEELLSELFIQAG--------PVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDE   78 (267)
T ss_pred             hhhHHHHHhhhhhhhHHHHHHHhhccC--------ceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccch
Confidence            347899999999999999999999999        3456888989999998 99999999999999998 5999999998


Q ss_pred             EEEEec
Q psy16116        516 IELFRS  521 (612)
Q Consensus       516 IeV~~a  521 (612)
                      +.|..-
T Consensus        79 ~q~~~r   84 (267)
T KOG4454|consen   79 EQRTLR   84 (267)
T ss_pred             hhcccc
Confidence            877653

>KOG4210|consensus

Probab=97.38  E-value=0.00011  Score=77.08  Aligned_cols=129  Identities=13%  Similarity=0.036  Sum_probs=89.6

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEee-CCCCCceeEEEEEeCCHHHHHHHHHhCCc-ccCCE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVK-KPDGKATGDAFVLFEKEEEADKALSKHKE-SIGIR  514 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~-d~~GrskG~AFV~F~s~edA~kAL~~~~~-~iggR  514 (612)
                      ...+.|++++.+.+.+.++..+|...|.    .++    ..+.. .....++|+++|.|+..+.+..||++.+. .+.++
T Consensus        87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~----~~~----~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~  158 (285)
T KOG4210|consen   87 SSSTFFVGELSENIEESEDDNFSSEAGL----RVD----ARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGN  158 (285)
T ss_pred             ccccccccccccchhhccccccchhhcC----ccc----chhhhhccccccccceeeccccHHHHHHHHHhhhccccccc
Confidence            3567999999999999999999999983    222    33333 34678999999999999999999998764 55555


Q ss_pred             EEEEEecchHHHHHHhhhhcCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCcccccCCCcccEEE-EcCCCccCCHH
Q psy16116        515 YIELFRSTTAEVQQVLNKTMELPKNNSLTSSNNGLSAQQPMLSHLAQVPVPYLPQHIITSGTRKDCIR-LRGLPYEALCI  593 (612)
Q Consensus       515 ~IeV~~as~~e~~~~~~~~~~~~~~~~~~~e~~~~s~~~~~~~~~s~~p~~~~~~~~~~~~~~~~~Vf-VrNLPf~vTee  593 (612)
                      .++.......-.     +..   +    ..  .                        ........++| |.||+|++|++
T Consensus       159 ~~~~dl~~~~~~-----~~~---n----~~--~------------------------~~~~~~s~~~~~~~~~~f~~~~d  200 (285)
T KOG4210|consen  159 KGEKDLNTRRGL-----RPK---N----KL--S------------------------RLSSGPSDTIFFVGELDFSLTRD  200 (285)
T ss_pred             cccCcccccccc-----ccc---c----hh--c------------------------ccccCccccceeecccccccchH
Confidence            544333221110     000   0    00  0                        00011223454 99999999999


Q ss_pred             HHHHhhccCCcEeEeeCC
Q psy16116        594 LMDIFFVGQQDSFVHKVP  611 (612)
Q Consensus       594 DLkefFs~~gdI~~~kip  611 (612)
                      ||+++|..+++|..+++|
T Consensus       201 ~~~~~~~~~~~i~~~r~~  218 (285)
T KOG4210|consen  201 DLKEHFVSSGEITSVRLP  218 (285)
T ss_pred             HHhhhccCcCcceeeccC
Confidence            999999999999988876

>KOG4209|consensus

Probab=97.12  E-value=0.00051  Score=70.15  Aligned_cols=73  Identities=27%  Similarity=0.208  Sum_probs=55.8

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCC-CCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEecc
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAF-GRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKA  413 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~-GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s  413 (612)
                      .++++|+++..+.+.+...|+. +.+..|.|..+++ |.++|||||+|.+.+.+.+||++++..|.++.|+|...
T Consensus       103 sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt~~  177 (231)
T KOG4209|consen  103 SVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVTLK  177 (231)
T ss_pred             eEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceeeee
Confidence            4556667666554444433333 2367788888876 57899999999999999999999999999999998543

>KOG0533|consensus

Probab=96.97  E-value=0.0012  Score=67.84  Aligned_cols=76  Identities=20%  Similarity=0.180  Sum_probs=63.3

Q ss_pred             ccceecCCCHHHHHhhHhhccccc-CeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCc
Q psy16116        340 LCPLVQNIWLSLLLNTIPGYEQVL-GLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANG  415 (612)
Q Consensus       340 l~vlV~nLp~~~~e~~fkeff~~~-~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~  415 (612)
                      ..+.|.||++..+.++++++|... .+.-+-+-+++.|++.|.|-|.|...+||..|++ +++--++|+.+.+.....
T Consensus        84 ~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~  161 (243)
T KOG0533|consen   84 TKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISS  161 (243)
T ss_pred             ceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecC
Confidence            457788888888888888777653 5677778889999999999999999999999997 788889999988865543

>KOG0116|consensus

Probab=96.95  E-value=0.0064  Score=67.08  Aligned_cols=69  Identities=19%  Similarity=0.235  Sum_probs=47.8

Q ss_pred             ceecCCCHHH----HHhhHhhcccccCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEec
Q psy16116        342 PLVQNIWLSL----LLNTIPGYEQVLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTK  412 (612)
Q Consensus       342 vlV~nLp~~~----~e~~fkeff~~~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~  412 (612)
                      ++|+|||.++    ++++|+.|+.+ ....|.+. ...+++..||||+|.+.++++.||..+...||+|.+.|..
T Consensus       291 i~V~nlP~da~~~~l~~~Fk~FG~I-k~~~I~vr-~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Vee  363 (419)
T KOG0116|consen  291 IFVKNLPPDATPAELEEVFKQFGPI-KEGGIQVR-SPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEE  363 (419)
T ss_pred             eEeecCCCCCCHHHHHHHHhhcccc-cccceEEe-ccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEe
Confidence            4455555554    55566665542 22333332 2345555999999999999999999999999999988843

>KOG4849|consensus

Probab=96.91  E-value=0.00093  Score=70.65  Aligned_cols=84  Identities=10%  Similarity=0.209  Sum_probs=70.4

Q ss_pred             CCcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccC
Q psy16116        435 RGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIG  512 (612)
Q Consensus       435 ~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~ig  512 (612)
                      .+..+++||+||-|.+|++||.+.....|+.  .+    ..+++..++ +|.+||||.|...+...+++-++ +-.+.|.
T Consensus        77 ~Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~--~~----~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iH  150 (498)
T KOG4849|consen   77 EGRKYCCYVGNLLWYTTDADLLKALQSTGLA--QF----ADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIH  150 (498)
T ss_pred             cCceEEEEecceeEEeccHHHHHHHHhhhHH--HH----hhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceec
Confidence            3567899999999999999999999999952  23    347787776 79999999999999999999998 5888888


Q ss_pred             CEEEEEEecchH
Q psy16116        513 IRYIELFRSTTA  524 (612)
Q Consensus       513 gR~IeV~~as~~  524 (612)
                      |..-.|..+++.
T Consensus       151 GQ~P~V~~~NK~  162 (498)
T KOG4849|consen  151 GQSPTVLSYNKT  162 (498)
T ss_pred             CCCCeeeccchh
Confidence            887777776544

>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation

Probab=96.90  E-value=0.0036  Score=56.41  Aligned_cols=77  Identities=25%  Similarity=0.278  Sum_probs=43.8

Q ss_pred             cEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHHh---C---CcccC
Q psy16116        439 VIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALSK---H---KESIG  512 (612)
Q Consensus       439 ~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~~---~---~~~ig  512 (612)
                      ..|++.|+...++.++|++.|+.+|        .+.-|.+.   .|.  -.|||.|.+.++|++|++.   .   +-.+.
T Consensus         2 ~il~~~g~~~~~~re~iK~~f~~~g--------~V~yVD~~---~G~--~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~   68 (105)
T PF08777_consen    2 CILKFSGLGEPTSREDIKEAFSQFG--------EVAYVDFS---RGD--TEGYVRFKTPEAAQKALEKLKEANDGKLKIK   68 (105)
T ss_dssp             -EEEEEE--SS--HHHHHHHT-SS----------EEEEE-----TT---SEEEEEESS---HHHHHHHHHHTTTS-B-TT
T ss_pred             eEEEEecCCCCcCHHHHHHHHHhcC--------CcceEEec---CCC--CEEEEEECCcchHHHHHHHHHhccCCceEEc
Confidence            4799999999999999999999998        23334443   333  3799999999999999963   3   45577


Q ss_pred             CEEEEEEecchHHHHH
Q psy16116        513 IRYIELFRSTTAEVQQ  528 (612)
Q Consensus       513 gR~IeV~~as~~e~~~  528 (612)
                      +..+.+....-++-..
T Consensus        69 ~~~~~~~vLeGeeE~~   84 (105)
T PF08777_consen   69 GKEVTLEVLEGEEEEE   84 (105)
T ss_dssp             SSSEEEE---HHHHHH
T ss_pred             CceEEEEECCCHHHHH
Confidence            7777777665444433

It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.

>KOG4661|consensus

Probab=96.82  E-value=0.0068  Score=67.69  Aligned_cols=69  Identities=19%  Similarity=0.219  Sum_probs=53.3

Q ss_pred             ecCCCH----HHHHhhHhhcccccCeeeEEEeeCCC-CCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCc
Q psy16116        344 VQNIWL----SLLLNTIPGYEQVLGLGGVALCLSAF-GRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANG  415 (612)
Q Consensus       344 V~nLp~----~~~e~~fkeff~~~~v~~V~ii~d~~-GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~  415 (612)
                      |.+|+.    .++.+.|+.|+.   |.+.+++.+.. -..+.||||++.+.++|-++|. ++...|.||.|.|.++.+
T Consensus       410 VSGLSstTRAtDLKnlFSKyGK---VvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKN  484 (940)
T KOG4661|consen  410 VSGLSSTTRATDLKNLFSKYGK---VVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKN  484 (940)
T ss_pred             eeccccchhhhHHHHHHHHhcc---eeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeeccc
Confidence            445544    456666766665   66777777643 2357899999999999999997 899999999999988754

>KOG0415|consensus

Probab=96.79  E-value=0.0026  Score=67.57  Aligned_cols=75  Identities=16%  Similarity=0.145  Sum_probs=60.2

Q ss_pred             cEeecCCCCCCCcccceecCCCHHHHHhhHhhcccccCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHH-HhCCCccC
Q psy16116        327 TVYTIPTPGNPVALCPLVQNIWLSLLLNTIPGYEQVLGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMAL-KRHKHHID  404 (612)
Q Consensus       327 tvfV~~l~~~~~~l~vlV~nLp~~~~e~~fkeff~~~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL-~~ng~~Ig  404 (612)
                      -|||-.|-+...+          ++++-.|+.|+.   +.++.+++|. +|-+--||||+|++.+++++|. ++++..|+
T Consensus       241 VLFVCKLNPVTtD----------eDLeiIFSrFG~---i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLID  307 (479)
T KOG0415|consen  241 VLFVCKLNPVTTD----------EDLEIIFSRFGK---IVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLID  307 (479)
T ss_pred             eEEEEecCCcccc----------cchhhHHhhccc---ceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeec
Confidence            3666555554444          677777888775   7788888886 5889999999999999999999 68999999


Q ss_pred             ceEEEEeccC
Q psy16116        405 KRYIEVTKAN  414 (612)
Q Consensus       405 gR~IeV~~s~  414 (612)
                      .|.|-|-.+.
T Consensus       308 DrRIHVDFSQ  317 (479)
T KOG0415|consen  308 DRRIHVDFSQ  317 (479)
T ss_pred             cceEEeehhh
Confidence            9999996554

>KOG0153|consensus

Probab=96.70  E-value=0.0047  Score=65.60  Aligned_cols=59  Identities=17%  Similarity=0.185  Sum_probs=45.0

Q ss_pred             HHHHHhhHhhcccccCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH--hCCCccCceEEEEeccCc
Q psy16116        349 LSLLLNTIPGYEQVLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK--RHKHHIDKRYIEVTKANG  415 (612)
Q Consensus       349 ~~~~e~~fkeff~~~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~--~ng~~IggR~IeV~~s~~  415 (612)
                      ..++++.|..|+   ++.+|+++.     .+|+|||+|.+.+.|+.|..  .+...|+|+.|.|.++..
T Consensus       242 e~dIrdhFyqyG---eirsi~~~~-----~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~  302 (377)
T KOG0153|consen  242 EQDIRDHFYQYG---EIRSIRILP-----RKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRP  302 (377)
T ss_pred             HHHHHHHHhhcC---CeeeEEeec-----ccccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCC
Confidence            355555555555   477888753     35699999999999999997  466788999999987665

>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes

Probab=96.60  E-value=0.0074  Score=52.42  Aligned_cols=68  Identities=18%  Similarity=0.188  Sum_probs=44.5

Q ss_pred             cEEEEeCCCCCCCHHH----HHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCC
Q psy16116        439 VIIRMRGLPYECTAKQ----VIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGI  513 (612)
Q Consensus       439 ~~VfV~nLP~s~te~d----LrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~igg  513 (612)
                      ..|+|.|||-+.+-..    |+.++..||-   .|      +.|       +.|-|+|.|.++|.|++|++ ++++.+.|
T Consensus         3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGG---kV------l~v-------~~~tAilrF~~~~~A~RA~KRmegEdVfG   66 (90)
T PF11608_consen    3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGG---KV------LSV-------SGGTAILRFPNQEFAERAQKRMEGEDVFG   66 (90)
T ss_dssp             EEEEEES--TTS-HHHHHHHHHHHHHTTT-----E------EE---------TT-EEEEESSHHHHHHHHHHHTT--SSS
T ss_pred             cEEEEecCCCCCCHHHHHHHHHHHhhccCC---EE------EEE-------eCCEEEEEeCCHHHHHHHHHhhccccccc
Confidence            3599999999998665    4566678882   11      223       23789999999999999996 79999999


Q ss_pred             EEEEEEecc
Q psy16116        514 RYIELFRST  522 (612)
Q Consensus       514 R~IeV~~as  522 (612)
                      +.|.|....
T Consensus        67 ~kI~v~~~~   75 (90)
T PF11608_consen   67 NKISVSFSP   75 (90)
T ss_dssp             S--EEESS-
T ss_pred             ceEEEEEcC
Confidence            999998653

Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.

>KOG0132|consensus

Probab=96.59  E-value=0.0034  Score=72.25  Aligned_cols=107  Identities=14%  Similarity=0.191  Sum_probs=76.6

Q ss_pred             cccceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCcc
Q psy16116        339 ALCPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGE  416 (612)
Q Consensus       339 ~l~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~  416 (612)
                      +.+++|++|+...++.+|+..|+. +.+.+|.++-     ++|+|||.+....||.+||+ +++..+.++.|+|.++...
T Consensus       421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~-----~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~  495 (894)
T KOG0132|consen  421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP-----PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGK  495 (894)
T ss_pred             eeeeeeccccchhhHHHHHHHHHhcccceeEeecc-----CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccC
Confidence            346789999998888888876554 5588888853     68999999999999999996 6788899999999877543


Q ss_pred             chhhccCCCCcchhhhccCCcccEEEEeCCCCCCCHHHHHHHHhc
Q psy16116        417 DFINVAGGNNNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEA  461 (612)
Q Consensus       417 e~~~~~g~~~~e~~~~~~~~~~~~VfV~nLP~s~te~dLrefF~~  461 (612)
                      ...      + +-+.+.+    ..+=|.-+||+--.+|++.|-+.
T Consensus       496 G~k------s-e~k~~wD----~~lGVt~IP~~kLt~dl~~~~eg  529 (894)
T KOG0132|consen  496 GPK------S-EYKDYWD----VELGVTYIPWEKLTDDLEAWCEG  529 (894)
T ss_pred             Ccc------h-hhhhhhh----cccCeeEeehHhcCHHHHHhhhh
Confidence            211      1 1122222    22455667898666667777664

>KOG4660|consensus

Probab=96.49  E-value=0.0022  Score=71.51  Aligned_cols=69  Identities=20%  Similarity=0.250  Sum_probs=58.4

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRY  515 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~  515 (612)
                      ..++|+|-|||.++++++|++.|+.||    +    +.+|+.-    -..+|..||+|-|--+|++||+ +++..|.|+.
T Consensus        74 ~~~~L~v~nl~~~Vsn~~L~~~f~~yG----e----ir~ir~t----~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~  141 (549)
T KOG4660|consen   74 NQGTLVVFNLPRSVSNDTLLRIFGAYG----E----IREIRET----PNKRGIVFVEFYDVRDAERALKALNRREIAGKR  141 (549)
T ss_pred             ccceEEEEecCCcCCHHHHHHHHHhhc----c----hhhhhcc----cccCceEEEEEeehHhHHHHHHHHHHHHhhhhh
Confidence            457899999999999999999999999    3    3455542    3457899999999999999995 7999999887


Q ss_pred             EE
Q psy16116        516 IE  517 (612)
Q Consensus       516 Ie  517 (612)
                      |.
T Consensus       142 ~k  143 (549)
T KOG4660|consen  142 IK  143 (549)
T ss_pred             hc
Confidence            66

>KOG1995|consensus

Probab=96.46  E-value=0.0023  Score=68.13  Aligned_cols=85  Identities=16%  Similarity=0.164  Sum_probs=68.0

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCc---eeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCccc
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGE---EGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESI  511 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v---~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~i  511 (612)
                      ...+|||.+||-++++++|.+||..|++  |.- ++.   -.|.|-+|. +++.||.|-|.|.+.-.|+.|+. +++..+
T Consensus        65 ~~~ti~v~g~~d~~~~~~~~~~f~qcg~--ikr-nK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf  141 (351)
T KOG1995|consen   65 DNETIFVWGCPDSVCENDNADFFLQCGV--IKR-NKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDF  141 (351)
T ss_pred             ccccceeeccCccchHHHHHHHHhhcce--ecc-CCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccc
Confidence            3467999999999999999999999983  111 001   135566665 79999999999999999999998 588888


Q ss_pred             CCEEEEEEecchH
Q psy16116        512 GIRYIELFRSTTA  524 (612)
Q Consensus       512 ggR~IeV~~as~~  524 (612)
                      .+-.|+|..+.+.
T Consensus       142 ~gn~ikvs~a~~r  154 (351)
T KOG1995|consen  142 CGNTIKVSLAERR  154 (351)
T ss_pred             cCCCchhhhhhhc
Confidence            8888999887544

>KOG1924|consensus

Probab=96.31  E-value=0.0075  Score=69.59  Aligned_cols=15  Identities=20%  Similarity=-0.077  Sum_probs=6.5

Q ss_pred             ccCCCCCCccccCCC
Q psy16116        292 LLQPMNTPFFFNMPR  306 (612)
Q Consensus       292 ~~~~~~~p~~~~~P~  306 (612)
                      .-....+|+.+.|++
T Consensus       591 ~~Gg~ppPP~~gm~p  605 (1102)
T KOG1924|consen  591 FLGGPPPPPPPGMFP  605 (1102)
T ss_pred             CCCCCCCCCCCCccc
Confidence            334444444444433

>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []

Probab=95.71  E-value=0.022  Score=51.06  Aligned_cols=76  Identities=13%  Similarity=0.224  Sum_probs=50.6

Q ss_pred             ccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeC-------CCCCceeEEEEEeCCHHHHHHHHHhCCcc
Q psy16116        438 QVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKK-------PDGKATGDAFVLFEKEEEADKALSKHKES  510 (612)
Q Consensus       438 ~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d-------~~GrskG~AFV~F~s~edA~kAL~~~~~~  510 (612)
                      +..|.|=|.|.+ ....|.+.|+.||    +|++   ...+..+       +.-.....-.|+|+++.+|.+||.+||..
T Consensus         6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G----~Ile---~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i   77 (100)
T PF05172_consen    6 ETWVTVFGFPPS-ASNQVLRHFSSFG----TILE---HFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTI   77 (100)
T ss_dssp             CCEEEEE---GG-GHHHHHHHHHCCS-----EEC---EEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEE
T ss_pred             CeEEEEEccCHH-HHHHHHHHHHhcc----eEEE---eecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeE
Confidence            356889999988 6678888999999    6653   1111111       11123468899999999999999999999


Q ss_pred             cCCEEE-EEEec
Q psy16116        511 IGIRYI-ELFRS  521 (612)
Q Consensus       511 iggR~I-eV~~a  521 (612)
                      ++|..| -|.++
T Consensus        78 ~~g~~mvGV~~~   89 (100)
T PF05172_consen   78 FSGSLMVGVKPC   89 (100)
T ss_dssp             ETTCEEEEEEE-
T ss_pred             EcCcEEEEEEEc
Confidence            998664 46655

This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.

>KOG0112|consensus

Probab=95.62  E-value=0.011  Score=69.11  Aligned_cols=152  Identities=12%  Similarity=0.071  Sum_probs=106.0

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCccch
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGEDF  418 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~e~  418 (612)
                      +++++||.....+..++.-|.. +.+.+|.|...+-++-.-||||.|.+-..+-.|.. ..+..|+...+.+-....   
T Consensus       374 TLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~~---  450 (975)
T KOG0112|consen  374 TLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQP---  450 (975)
T ss_pred             hhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCccccccccc---
Confidence            5567777766666666643332 45778888666566666799999999998888884 555555544333321110   


Q ss_pred             hhccCCCCcchhhhccCCcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHH
Q psy16116        419 INVAGGNNNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEE  498 (612)
Q Consensus       419 ~~~~g~~~~e~~~~~~~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~e  498 (612)
                            .         ......++++||..++....+...|..||.           |+++.-+.|.+  ||||.+.+..
T Consensus       451 ------k---------st~ttr~~sgglg~w~p~~~l~r~fd~fGp-----------ir~Idy~hgq~--yayi~yes~~  502 (975)
T KOG0112|consen  451 ------K---------STPTTRLQSGGLGPWSPVSRLNREFDRFGP-----------IRIIDYRHGQP--YAYIQYESPP  502 (975)
T ss_pred             ------c---------cccceeeccCCCCCCChHHHHHHHhhccCc-----------ceeeecccCCc--ceeeecccCc
Confidence                  0         012345999999999999999999999992           33333334443  9999999999


Q ss_pred             HHHHHHH-hCCcccCC--EEEEEEecch
Q psy16116        499 EADKALS-KHKESIGI--RYIELFRSTT  523 (612)
Q Consensus       499 dA~kAL~-~~~~~igg--R~IeV~~as~  523 (612)
                      .++.|+. +.+..||+  |.+.|..+..
T Consensus       503 ~aq~a~~~~rgap~G~P~~r~rvdla~~  530 (975)
T KOG0112|consen  503 AAQAATHDMRGAPLGGPPRRLRVDLASP  530 (975)
T ss_pred             cchhhHHHHhcCcCCCCCcccccccccC
Confidence            9999996 78888886  6677777643

>KOG0115|consensus

Probab=95.61  E-value=0.024  Score=58.23  Aligned_cols=99  Identities=18%  Similarity=0.115  Sum_probs=77.1

Q ss_pred             HHHHH-HhCCCccCceEEEEeccCccchhhccCCCCcchhhhccCCcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccc
Q psy16116        392 RDMAL-KRHKHHIDKRYIEVTKANGEDFINVAGGNNNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVM  470 (612)
Q Consensus       392 A~kAL-~~ng~~IggR~IeV~~s~~~e~~~~~g~~~~e~~~~~~~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Iv  470 (612)
                      |+.|- ++++....+|.++|..+...                       .|+|.||+.-++.+.+.+-|+.||       
T Consensus         7 ae~ak~eLd~~~~~~~~lr~rfa~~a-----------------------~l~V~nl~~~~sndll~~~f~~fg-------   56 (275)
T KOG0115|consen    7 AEIAKRELDGRFPKGRSLRVRFAMHA-----------------------ELYVVNLMQGASNDLLEQAFRRFG-------   56 (275)
T ss_pred             HHHHHHhcCCCCCCCCceEEEeeccc-----------------------eEEEEecchhhhhHHHHHhhhhcC-------
Confidence            33443 35788889999998665431                       399999999999999999999999       


Q ss_pred             cCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHHh--CC---cccCCEEEEEEec
Q psy16116        471 DGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALSK--HK---ESIGIRYIELFRS  521 (612)
Q Consensus       471 d~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~~--~~---~~iggR~IeV~~a  521 (612)
                       .++...+..|..|+.+|.++|.|.+.-.+.+|+..  ++   ....+|.+-|.+.
T Consensus        57 -~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP~  111 (275)
T KOG0115|consen   57 -PIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEPM  111 (275)
T ss_pred             -ccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCChh
Confidence             45666677788999999999999999999999963  33   3345666666553

>KOG0151|consensus

Probab=95.54  E-value=0.024  Score=65.03  Aligned_cols=77  Identities=13%  Similarity=0.059  Sum_probs=63.5

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC----CCCceeEEEEEeCCHHHHHHHHH-hCCccc
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP----DGKATGDAFVLFEKEEEADKALS-KHKESI  511 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~----~GrskG~AFV~F~s~edA~kAL~-~~~~~i  511 (612)
                      ....+||+||+.+++|+.|..-|..||        .+.+|+|+.-+    .-+-+-+|||.|-+-.|+++|++ +++..+
T Consensus       173 ~TTNlyv~Nlnpsv~E~~ll~tfGrfg--------PlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv  244 (877)
T KOG0151|consen  173 QTTNLYVGNLNPSVDENFLLRTFGRFG--------PLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIV  244 (877)
T ss_pred             cccceeeecCCccccHHHHHHHhcccC--------cccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceee
Confidence            456799999999999999999999999        34567776432    34567899999999999999996 788888


Q ss_pred             CCEEEEEEec
Q psy16116        512 GIRYIELFRS  521 (612)
Q Consensus       512 ggR~IeV~~a  521 (612)
                      .++.+.+-.+
T Consensus       245 ~~~e~K~gWg  254 (877)
T KOG0151|consen  245 MEYEMKLGWG  254 (877)
T ss_pred             eeeeeeeccc
Confidence            8888777654

>KOG1924|consensus

Probab=95.05  E-value=0.088  Score=61.23  Aligned_cols=7  Identities=14%  Similarity=0.107  Sum_probs=3.1

Q ss_pred             HHHHHhc
Q psy16116        220 QQMAALN  226 (612)
Q Consensus       220 ~~~~~~~  226 (612)
                      +.+|+.+
T Consensus       510 e~~al~s  516 (1102)
T KOG1924|consen  510 EKQALSS  516 (1102)
T ss_pred             hhhhccC
Confidence            4455443

>COG5175 MOT2 Transcriptional repressor [Transcription]

Probab=94.93  E-value=0.056  Score=57.41  Aligned_cols=80  Identities=15%  Similarity=0.309  Sum_probs=58.6

Q ss_pred             ccEEEEeCCCCCCCHHHH------HHHHhcCCCCccccccCceeEEEeeCC-CCCc-eeEE--EEEeCCHHHHHHHHH-h
Q psy16116        438 QVIIRMRGLPYECTAKQV------IDFFEAGTENSCNVMDGEEGVLFVKKP-DGKA-TGDA--FVLFEKEEEADKALS-K  506 (612)
Q Consensus       438 ~~~VfV~nLP~s~te~dL------refF~~~Gi~~~~Ivd~v~~I~i~~d~-~Grs-kG~A--FV~F~s~edA~kAL~-~  506 (612)
                      ...+||-|||..+..+++      .+||..||    .|    ..|.|-+.. .-.+ .|-+  ||+|.+.|||.+||. .
T Consensus       114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyG----kI----~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~v  185 (480)
T COG5175         114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYG----KI----KKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEV  185 (480)
T ss_pred             cceeEEecCCCCCCcccccccccchhhhhhcc----ce----eEEEecccccccccccccceEEEEecchHHHHHHHHHh
Confidence            356999999999888773      47999999    34    344443222 1112 2323  999999999999996 6


Q ss_pred             CCcccCCEEEEEEecchHH
Q psy16116        507 HKESIGIRYIELFRSTTAE  525 (612)
Q Consensus       507 ~~~~iggR~IeV~~as~~e  525 (612)
                      ||..++||.|+-...+.+-
T Consensus       186 Dgs~~DGr~lkatYGTTKY  204 (480)
T COG5175         186 DGSLLDGRVLKATYGTTKY  204 (480)
T ss_pred             ccccccCceEeeecCchHH
Confidence            9999999999887766543

>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif

Probab=94.79  E-value=0.059  Score=42.67  Aligned_cols=52  Identities=19%  Similarity=0.409  Sum_probs=38.5

Q ss_pred             cEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHH
Q psy16116        439 VIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKAL  504 (612)
Q Consensus       439 ~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL  504 (612)
                      ..|-|.|.+.+..+ ++..+|..||    +|    ..+.+.     ..+-..||.|++..+|++||
T Consensus         2 ~wI~V~Gf~~~~~~-~vl~~F~~fG----eI----~~~~~~-----~~~~~~~l~y~~~~~ae~Al   53 (53)
T PF14605_consen    2 TWISVSGFPPDLAE-EVLEHFASFG----EI----VDIYVP-----ESTNWMYLKYKSRKDAEKAL   53 (53)
T ss_pred             cEEEEEeECchHHH-HHHHHHHhcC----CE----EEEEcC-----CCCcEEEEEECCHHHHHhhC
Confidence            35888898877664 4555888999    55    335543     33458999999999999996

>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2

Probab=94.48  E-value=0.092  Score=46.89  Aligned_cols=63  Identities=14%  Similarity=0.006  Sum_probs=41.8

Q ss_pred             cceecCCCH----HHHHhhHhhcccccCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccC
Q psy16116        341 CPLVQNIWL----SLLLNTIPGYEQVLGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHID  404 (612)
Q Consensus       341 ~vlV~nLp~----~~~e~~fkeff~~~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~Ig  404 (612)
                      +|+++|+|-    +.+.+.|.+.+. +.-+=+.+..|. ++.+.|||||.|.+.++|.+-.+ .+|..+.
T Consensus         3 TvMirNIPn~~t~~~L~~~l~~~~~-g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~   71 (97)
T PF04059_consen    3 TVMIRNIPNKYTQEMLIQILDEHFK-GKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWP   71 (97)
T ss_pred             eEEEecCCCCCCHHHHHHHHHHhcc-CcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccc
Confidence            455666655    455555555443 334455565564 56789999999999999998876 5665553

It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).

>KOG2314|consensus

Probab=94.43  E-value=0.052  Score=61.02  Aligned_cols=75  Identities=15%  Similarity=0.224  Sum_probs=57.9

Q ss_pred             cccEEEEeCCCCCCC------HHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCc
Q psy16116        437 AQVIIRMRGLPYECT------AKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKE  509 (612)
Q Consensus       437 ~~~~VfV~nLP~s~t------e~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~  509 (612)
                      -..+|+|-|.|---.      ..-|.++|+++|    .    +....++.+..|+.+||.|++|++..+|++|++ +||+
T Consensus        57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~g----k----~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~  128 (698)
T KOG2314|consen   57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAG----K----IVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGK  128 (698)
T ss_pred             cceEEEECCCcccChhHHHHHHHHHHHHHHhhc----c----ccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccc
Confidence            456788888886432      234667899999    3    445888889989999999999999999999996 6888


Q ss_pred             ccCC-EEEEEE
Q psy16116        510 SIGI-RYIELF  519 (612)
Q Consensus       510 ~igg-R~IeV~  519 (612)
                      .|+. +...|.
T Consensus       129 ~ldknHtf~v~  139 (698)
T KOG2314|consen  129 RLDKNHTFFVR  139 (698)
T ss_pred             eecccceEEee
Confidence            7764 344444

>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes

Probab=94.32  E-value=0.17  Score=44.10  Aligned_cols=36  Identities=31%  Similarity=0.345  Sum_probs=26.7

Q ss_pred             cceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccC
Q psy16116        379 NGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKAN  414 (612)
Q Consensus       379 rG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~  414 (612)
                      .|.|+|.|.+.|.|++|++ ++++..-|+.|.|....
T Consensus        39 ~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~   75 (90)
T PF11608_consen   39 GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSP   75 (90)
T ss_dssp             TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS-
T ss_pred             CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcC
Confidence            3799999999999999998 78888889999996653

Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.

>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function

Probab=93.92  E-value=0.26  Score=40.58  Aligned_cols=55  Identities=22%  Similarity=0.428  Sum_probs=42.5

Q ss_pred             cEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH
Q psy16116        439 VIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS  505 (612)
Q Consensus       439 ~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~  505 (612)
                      ..|+|+|+. +.+.+||+.||..|.- . .   ....|..+.|.      -|-|.|.+.+.|.+||.
T Consensus         6 eavhirGvd-~lsT~dI~~y~~~y~~-~-~---~~~~IEWIdDt------ScNvvf~d~~~A~~AL~   60 (62)
T PF10309_consen    6 EAVHIRGVD-ELSTDDIKAYFSEYFD-E-E---GPFRIEWIDDT------SCNVVFKDEETAARALV   60 (62)
T ss_pred             ceEEEEcCC-CCCHHHHHHHHHHhcc-c-C---CCceEEEecCC------cEEEEECCHHHHHHHHH
Confidence            359999994 5899999999999920 0 0   23567887553      38999999999999995

>KOG1995|consensus

Probab=93.62  E-value=0.068  Score=57.25  Aligned_cols=80  Identities=18%  Similarity=0.099  Sum_probs=56.5

Q ss_pred             CCcccceecCCCHHHHHhhHhhcccccCe---------eeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCc
Q psy16116        337 PVALCPLVQNIWLSLLLNTIPGYEQVLGL---------GGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDK  405 (612)
Q Consensus       337 ~~~l~vlV~nLp~~~~e~~fkeff~~~~v---------~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~Igg  405 (612)
                      ....+++||+|+..++++++.+||..+.+         -.|.+-+++ +++.+|.|.|.|++.-.|+.|+. .+++.+.+
T Consensus        64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~g  143 (351)
T KOG1995|consen   64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCG  143 (351)
T ss_pred             cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccC
Confidence            33445667777766666655555543211         123444444 57899999999999999999998 78888888


Q ss_pred             eEEEEeccCcc
Q psy16116        406 RYIEVTKANGE  416 (612)
Q Consensus       406 R~IeV~~s~~~  416 (612)
                      ..|+|..+...
T Consensus       144 n~ikvs~a~~r  154 (351)
T KOG1995|consen  144 NTIKVSLAERR  154 (351)
T ss_pred             CCchhhhhhhc
Confidence            99999877653

>KOG2314|consensus

Probab=93.48  E-value=0.13  Score=57.84  Aligned_cols=69  Identities=13%  Similarity=0.094  Sum_probs=51.1

Q ss_pred             CcccceecCCCH------HHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCce
Q psy16116        338 VALCPLVQNIWL------SLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKR  406 (612)
Q Consensus       338 ~~l~vlV~nLp~------~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR  406 (612)
                      .+.||+|-|+|.      +.++.-+...|.. +.+.+..+..+..|+.+||.|++|++..+|+.|++ +||+.|+.+
T Consensus        57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldkn  133 (698)
T KOG2314|consen   57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKN  133 (698)
T ss_pred             cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceeccc
Confidence            344777777764      3344444444443 44777888878888899999999999999999997 788887754

>KOG3152|consensus

Probab=93.17  E-value=0.065  Score=55.19  Aligned_cols=71  Identities=11%  Similarity=0.158  Sum_probs=56.7

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-C--------CCce----eEEEEEeCCHHHHHHH
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-D--------GKAT----GDAFVLFEKEEEADKA  503 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~--------Grsk----G~AFV~F~s~edA~kA  503 (612)
                      ...+||++++|....-..||++|+.||        .+.+|.|-... .        |+++    -.|+|+|.+...|.+.
T Consensus        73 k~GVvylS~IPp~m~~~rlReil~~yG--------eVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~i  144 (278)
T KOG3152|consen   73 KTGVVYLSNIPPYMDPVRLREILSQYG--------EVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRI  144 (278)
T ss_pred             cceEEEeccCCCccCHHHHHHHHHhcc--------ccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHH
Confidence            346899999999999999999999999        45677775332 2        2333    3589999999999988


Q ss_pred             HH-hCCcccCCEE
Q psy16116        504 LS-KHKESIGIRY  515 (612)
Q Consensus       504 L~-~~~~~iggR~  515 (612)
                      .+ +|+..|||+.
T Consensus       145 Ae~Lnn~~Iggkk  157 (278)
T KOG3152|consen  145 AELLNNTPIGGKK  157 (278)
T ss_pred             HHHhCCCccCCCC
Confidence            76 6999999974

>KOG1855|consensus

Probab=93.08  E-value=0.11  Score=57.00  Aligned_cols=66  Identities=21%  Similarity=0.243  Sum_probs=54.1

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeC---C---CCCce--------eEEEEEeCCHHHHHH
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKK---P---DGKAT--------GDAFVLFEKEEEADK  502 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d---~---~Grsk--------G~AFV~F~s~edA~k  502 (612)
                      ..++|.+-|||-+-.-+.|.++|+.+|        .++.|+|+.-   +   .|.++        -.|+|+|..-+.|+|
T Consensus       230 ~srtivaenLP~Dh~~enl~kiFg~~G--------~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~K  301 (484)
T KOG1855|consen  230 PSRTIVAENLPLDHSYENLSKIFGTVG--------SIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARK  301 (484)
T ss_pred             ccceEEEecCCcchHHHHHHHHhhccc--------ceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHH
Confidence            568999999999999999999999999        5678998754   2   33333        459999999999999


Q ss_pred             HHHhCCcc
Q psy16116        503 ALSKHKES  510 (612)
Q Consensus       503 AL~~~~~~  510 (612)
                      |.++.+..
T Consensus       302 A~e~~~~e  309 (484)
T KOG1855|consen  302 ARELLNPE  309 (484)
T ss_pred             HHHhhchh
Confidence            99875443

>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []

Probab=92.85  E-value=0.19  Score=45.13  Aligned_cols=74  Identities=8%  Similarity=-0.058  Sum_probs=43.1

Q ss_pred             ccceecCCCHHHHHhhHhhcccccCeeeEE-EeeC-------CCCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEE-E
Q psy16116        340 LCPLVQNIWLSLLLNTIPGYEQVLGLGGVA-LCLS-------AFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIE-V  410 (612)
Q Consensus       340 l~vlV~nLp~~~~e~~fkeff~~~~v~~V~-ii~d-------~~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~Ie-V  410 (612)
                      ..|.|.|.|.+....-++.|...+.+.+.. +.++       +.-.....-.|+|+++.+|++||++||..++|..+- |
T Consensus         7 ~wVtVFGfp~~~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~mvGV   86 (100)
T PF05172_consen    7 TWVTVFGFPPSASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSLMVGV   86 (100)
T ss_dssp             CEEEEE---GGGHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCEEEEE
T ss_pred             eEEEEEccCHHHHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcEEEEE
Confidence            356677777776655555544444343332 1111       111223478999999999999999999999987653 5


Q ss_pred             ecc
Q psy16116        411 TKA  413 (612)
Q Consensus       411 ~~s  413 (612)
                      ..+
T Consensus        87 ~~~   89 (100)
T PF05172_consen   87 KPC   89 (100)
T ss_dssp             EE-
T ss_pred             EEc
Confidence            444

This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.

>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function

Probab=92.77  E-value=0.35  Score=46.21  Aligned_cols=58  Identities=22%  Similarity=0.189  Sum_probs=43.5

Q ss_pred             HHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCcccCCEEEEEEecchHHH
Q psy16116        454 QVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALSKHKESIGIRYIELFRSTTAEV  526 (612)
Q Consensus       454 dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~~~~~~iggR~IeV~~as~~e~  526 (612)
                      +|.+.|+.||    ++    .-||+.-       |.-+|+|.+-+.|-+||.+++..++|+.|.|+.-++.-+
T Consensus        52 ~ll~~~~~~G----ev----vLvRfv~-------~~mwVTF~dg~sALaals~dg~~v~g~~l~i~LKtpdW~  109 (146)
T PF08952_consen   52 ELLQKFAQYG----EV----VLVRFVG-------DTMWVTFRDGQSALAALSLDGIQVNGRTLKIRLKTPDWL  109 (146)
T ss_dssp             HHHHHHHCCS-----E----CEEEEET-------TCEEEEESSCHHHHHHHHGCCSEETTEEEEEEE------
T ss_pred             HHHHHHHhCC----ce----EEEEEeC-------CeEEEEECccHHHHHHHccCCcEECCEEEEEEeCCccHH
Confidence            7788899999    22    2355542       468999999999999999999999999999998776543

; PDB: 1UFW_A 2DNR_A.

>KOG2202|consensus

Probab=91.40  E-value=0.12  Score=53.38  Aligned_cols=67  Identities=21%  Similarity=0.209  Sum_probs=49.1

Q ss_pred             HHHHHHHh-cCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEEEEEEecchHHHH
Q psy16116        453 KQVIDFFE-AGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRYIELFRSTTAEVQ  527 (612)
Q Consensus       453 ~dLrefF~-~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~IeV~~as~~e~~  527 (612)
                      +||-..|+ +||        +++.+.|..+-.---+|-.||.|..+|+|++|++ +|+-.++||.|....+.-.++.
T Consensus        83 Ed~f~E~~~kyg--------Eiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT~~r  151 (260)
T KOG2202|consen   83 EDVFTELEDKYG--------EIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVTDFR  151 (260)
T ss_pred             HHHHHHHHHHhh--------hhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcCchh
Confidence            44444555 778        3455666544333578999999999999999996 7999999999887776544443

>KOG2202|consensus

Probab=91.02  E-value=0.12  Score=53.19  Aligned_cols=66  Identities=18%  Similarity=0.231  Sum_probs=46.7

Q ss_pred             HhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCccch
Q psy16116        353 LNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGEDF  418 (612)
Q Consensus       353 e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~e~  418 (612)
                      +++|.++... +.+.++.+..+-.-.-.|..||.|.++|+|++|++ +|+.+++|+.|-...+.-..|
T Consensus        83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT~~  150 (260)
T KOG2202|consen   83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVTDF  150 (260)
T ss_pred             HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcCch
Confidence            4444444422 44667766655433558999999999999999997 899999999887655544333

>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function

Probab=90.80  E-value=0.97  Score=37.24  Aligned_cols=48  Identities=19%  Similarity=0.083  Sum_probs=39.3

Q ss_pred             ecCCCHHHHHhhHhhcccccCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH
Q psy16116        344 VQNIWLSLLLNTIPGYEQVLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK  397 (612)
Q Consensus       344 V~nLp~~~~e~~fkeff~~~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~  397 (612)
                      |.+|+.+++..||.+||.......|.-+.|.      -|=|.|.|.+.|.+||.
T Consensus        13 vd~lsT~dI~~y~~~y~~~~~~~~IEWIdDt------ScNvvf~d~~~A~~AL~   60 (62)
T PF10309_consen   13 VDELSTDDIKAYFSEYFDEEGPFRIEWIDDT------SCNVVFKDEETAARALV   60 (62)
T ss_pred             CCCCCHHHHHHHHHHhcccCCCceEEEecCC------cEEEEECCHHHHHHHHH
Confidence            6789999999999999765456677776652      46899999999999996

>KOG4660|consensus

Probab=90.74  E-value=0.3  Score=55.09  Aligned_cols=68  Identities=21%  Similarity=0.320  Sum_probs=50.3

Q ss_pred             CCcEeecCCCCCCCcccceecCCCHHHHHhhHhhcccccCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCcc
Q psy16116        325 TPTVYTIPTPGNPVALCPLVQNIWLSLLLNTIPGYEQVLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHI  403 (612)
Q Consensus       325 ~~tvfV~~l~~~~~~l~vlV~nLp~~~~e~~fkeff~~~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~I  403 (612)
                      ..+|+|.+++          ..++.+++..+|..|++   |.+|+....    .+|..||+|-+..+|+.||+ +++..|
T Consensus        75 ~~~L~v~nl~----------~~Vsn~~L~~~f~~yGe---ir~ir~t~~----~~~~~~v~FyDvR~A~~Alk~l~~~~~  137 (549)
T KOG4660|consen   75 QGTLVVFNLP----------RSVSNDTLLRIFGAYGE---IREIRETPN----KRGIVFVEFYDVRDAERALKALNRREI  137 (549)
T ss_pred             cceEEEEecC----------CcCCHHHHHHHHHhhcc---hhhhhcccc----cCceEEEEEeehHhHHHHHHHHHHHHh
Confidence            4567655533          33445777777777765   667776443    46799999999999999997 788888


Q ss_pred             CceEEE
Q psy16116        404 DKRYIE  409 (612)
Q Consensus       404 ggR~Ie  409 (612)
                      .|+.|.
T Consensus       138 ~~~~~k  143 (549)
T KOG4660|consen  138 AGKRIK  143 (549)
T ss_pred             hhhhhc
Confidence            888776

>KOG0112|consensus

Probab=90.59  E-value=0.15  Score=60.28  Aligned_cols=114  Identities=16%  Similarity=0.031  Sum_probs=81.5

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCcccCCEE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKAL-SKHKESIGIRY  515 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL-~~~~~~iggR~  515 (612)
                      ...+||++||+..+++.+|+..|..+|        .++.|.|-.-.-+.-.-||||.|-+-+.+-+|. ++.+..|+.-.
T Consensus       371 atrTLf~Gnl~~kl~eseiR~af~e~g--------kve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~  442 (975)
T KOG0112|consen  371 ATRTLFLGNLDSKLTESEIRPAFDESG--------KVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGT  442 (975)
T ss_pred             hhhhhhhcCcccchhhhhhhhhhhhhc--------cccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCc
Confidence            468899999999999999999999999        345666654445566679999999888777776 34444433211


Q ss_pred             EEEEecchHHHHHHhhhhcCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCcccccCCCcccEEEEcCCCccCCHHHH
Q psy16116        516 IELFRSTTAEVQQVLNKTMELPKNNSLTSSNNGLSAQQPMLSHLAQVPVPYLPQHIITSGTRKDCIRLRGLPYEALCILM  595 (612)
Q Consensus       516 IeV~~as~~e~~~~~~~~~~~~~~~~~~~e~~~~s~~~~~~~~~s~~p~~~~~~~~~~~~~~~~~VfVrNLPf~vTeeDL  595 (612)
                      +.+.                                               +.+.   .+...+.+++++|..-+....|
T Consensus       443 ~r~g-----------------------------------------------lG~~---kst~ttr~~sgglg~w~p~~~l  472 (975)
T KOG0112|consen  443 HRIG-----------------------------------------------LGQP---KSTPTTRLQSGGLGPWSPVSRL  472 (975)
T ss_pred             cccc-----------------------------------------------cccc---ccccceeeccCCCCCCChHHHH
Confidence            1100                                               0000   0124567999999999999999


Q ss_pred             HHhhccCCcEeEe
Q psy16116        596 DIFFVGQQDSFVH  608 (612)
Q Consensus       596 kefFs~~gdI~~~  608 (612)
                      ...|..||.|...
T Consensus       473 ~r~fd~fGpir~I  485 (975)
T KOG0112|consen  473 NREFDRFGPIRII  485 (975)
T ss_pred             HHHhhccCcceee
Confidence            9999999977653

>KOG4849|consensus

Probab=90.49  E-value=13  Score=40.38  Aligned_cols=29  Identities=17%  Similarity=0.363  Sum_probs=22.2

Q ss_pred             CCCCcccceEEecCHHHHHHHHHHHhhcc
Q psy16116         88 QGQPSGEAFIQMDSEHSAYLAAQLRHNRN  116 (612)
Q Consensus        88 qg~~sg~~f~~~~~~~~~~~~~~~~~~~~  116 (612)
                      .|+--|=|.+.+.|+.+.++.-..--+|.
T Consensus       120 NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~  148 (498)
T KOG4849|consen  120 NGQSKGYALLVLNSDAAVKQTMEILPTKT  148 (498)
T ss_pred             CCcccceEEEEecchHHHHHHHHhcccce
Confidence            48888999999999998887765544443

>COG5175 MOT2 Transcriptional repressor [Transcription]

Probab=90.26  E-value=0.77  Score=49.11  Aligned_cols=80  Identities=13%  Similarity=0.124  Sum_probs=49.6

Q ss_pred             EeecCCCCCCCcccceecCCCHHHHHhhHhhcccccCeeeEEEeeCC-CCCC-cceE--EEEeCCHHHHHHHHH-hCCCc
Q psy16116        328 VYTIPTPGNPVALCPLVQNIWLSLLLNTIPGYEQVLGLGGVALCLSA-FGRR-NGEA--IVRFIDQEHRDMALK-RHKHH  402 (612)
Q Consensus       328 vfV~~l~~~~~~l~vlV~nLp~~~~e~~fkeff~~~~v~~V~ii~d~-~Grs-rG~A--FVeF~S~EdA~kAL~-~ng~~  402 (612)
                      +||+.++.-..+    =.+++.=.-.+||..|+.   +..|.+-+.. .-.+ .|.+  ||+|.+.|||.+||. -++..
T Consensus       117 vYVigi~pkva~----Ee~~~vLk~~eyFGQyGk---I~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~  189 (480)
T COG5175         117 VYVIGIPPKVAD----EEVAPVLKRHEYFGQYGK---IKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSL  189 (480)
T ss_pred             eEEecCCCCCCc----ccccccccchhhhhhccc---eeEEEecccccccccccccceEEEEecchHHHHHHHHHhcccc
Confidence            666665543332    122222334677777765   5555542221 1111 2323  999999999999996 79999


Q ss_pred             cCceEEEEeccC
Q psy16116        403 IDKRYIEVTKAN  414 (612)
Q Consensus       403 IggR~IeV~~s~  414 (612)
                      ++||.|+....+
T Consensus       190 ~DGr~lkatYGT  201 (480)
T COG5175         190 LDGRVLKATYGT  201 (480)
T ss_pred             ccCceEeeecCc
Confidence            999999876554

>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function

Probab=90.08  E-value=0.84  Score=43.68  Aligned_cols=57  Identities=14%  Similarity=0.084  Sum_probs=39.9

Q ss_pred             HHhhHhhcccccCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccCc
Q psy16116        352 LLNTIPGYEQVLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANG  415 (612)
Q Consensus       352 ~e~~fkeff~~~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~~  415 (612)
                      ..+.+..|...|.+.-|+++.       |.-.|+|.+-+.|.+||++++..++|+.|.|+.-+.
T Consensus        50 ~~~ll~~~~~~GevvLvRfv~-------~~mwVTF~dg~sALaals~dg~~v~g~~l~i~LKtp  106 (146)
T PF08952_consen   50 MDELLQKFAQYGEVVLVRFVG-------DTMWVTFRDGQSALAALSLDGIQVNGRTLKIRLKTP  106 (146)
T ss_dssp             HHHHHHHHHCCS-ECEEEEET-------TCEEEEESSCHHHHHHHHGCCSEETTEEEEEEE---
T ss_pred             HHHHHHHHHhCCceEEEEEeC-------CeEEEEECccHHHHHHHccCCcEECCEEEEEEeCCc
Confidence            344444444433355555542       466999999999999999999999999999976654

; PDB: 1UFW_A 2DNR_A.

>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation

Probab=90.07  E-value=0.28  Score=44.23  Aligned_cols=66  Identities=21%  Similarity=0.168  Sum_probs=30.4

Q ss_pred             ecCCCHHHHHhhHhhcccccCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHHh---C---CCccCceEEEEecc
Q psy16116        344 VQNIWLSLLLNTIPGYEQVLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALKR---H---KHHIDKRYIEVTKA  413 (612)
Q Consensus       344 V~nLp~~~~e~~fkeff~~~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~~---n---g~~IggR~IeV~~s  413 (612)
                      +.|+..+.++++|++.|...+  .|..+.-..|..  .|||.|.+.++|++|++.   .   +..|.+..+.+...
T Consensus         6 ~~g~~~~~~re~iK~~f~~~g--~V~yVD~~~G~~--~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~vL   77 (105)
T PF08777_consen    6 FSGLGEPTSREDIKEAFSQFG--EVAYVDFSRGDT--EGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEVL   77 (105)
T ss_dssp             EEE--SS--HHHHHHHT-SS----EEEEE--TT-S--EEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE--
T ss_pred             EecCCCCcCHHHHHHHHHhcC--CcceEEecCCCC--EEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEEC
Confidence            444444555666665554322  444544444533  789999999999999973   2   33455555555443

It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.

>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif

Probab=89.71  E-value=0.6  Score=36.92  Aligned_cols=49  Identities=8%  Similarity=0.076  Sum_probs=29.9

Q ss_pred             eecCCCHHHHHhhHhhcccccCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHH
Q psy16116        343 LVQNIWLSLLLNTIPGYEQVLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMAL  396 (612)
Q Consensus       343 lV~nLp~~~~e~~fkeff~~~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL  396 (612)
                      .|.|.+.+..+.-++.|...|.+..+.+-     ...-..||+|+++.+|++||
T Consensus         5 ~V~Gf~~~~~~~vl~~F~~fGeI~~~~~~-----~~~~~~~l~y~~~~~ae~Al   53 (53)
T PF14605_consen    5 SVSGFPPDLAEEVLEHFASFGEIVDIYVP-----ESTNWMYLKYKSRKDAEKAL   53 (53)
T ss_pred             EEEeECchHHHHHHHHHHhcCCEEEEEcC-----CCCcEEEEEECCHHHHHhhC
Confidence            34555555444333333333346666552     23348999999999999996

>KOG4676|consensus

Probab=88.79  E-value=0.66  Score=50.50  Aligned_cols=159  Identities=11%  Similarity=0.074  Sum_probs=94.4

Q ss_pred             cEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCC----CCceeEEEEEeCCHHHHHHHHHhCCcccCCE
Q psy16116        439 VIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPD----GKATGDAFVLFEKEEEADKALSKHKESIGIR  514 (612)
Q Consensus       439 ~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~----GrskG~AFV~F~s~edA~kAL~~~~~~iggR  514 (612)
                      ..|.|-||..+++.+.++.+|..+|        ++..+.|.-..+    .-....|||.|.+...+..|-.+-+..+=+|
T Consensus         8 ~vIqvanispsat~dqm~tlFg~lG--------kI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdr   79 (479)
T KOG4676|consen    8 GVIQVANISPSATKDQMQTLFGNLG--------KIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDR   79 (479)
T ss_pred             ceeeecccCchhhHHHHHHHHhhcc--------ccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeee
Confidence            4799999999999999999999999        456677754321    2356789999999999999988866666678


Q ss_pred             EEEEEecchH--HHHHHhhhhcCCC-CCCCCCCCCCCCCCcccccccccCCCCC-----CCCcccccC--CCcccEEEEc
Q psy16116        515 YIELFRSTTA--EVQQVLNKTMELP-KNNSLTSSNNGLSAQQPMLSHLAQVPVP-----YLPQHIITS--GTRKDCIRLR  584 (612)
Q Consensus       515 ~IeV~~as~~--e~~~~~~~~~~~~-~~~~~~~e~~~~s~~~~~~~~~s~~p~~-----~~~~~~~~~--~~~~~~VfVr  584 (612)
                      -+-|.+....  ....+........ .+...++++ ..-+.+.+ ..-.+.|..     .++.....-  .....+++|.
T Consensus        80 aliv~p~~~~~~p~r~af~~l~~~navprll~pdg-~Lp~~~~l-t~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~  157 (479)
T KOG4676|consen   80 ALIVRPYGDEVIPDRFAFVELADQNAVPRLLPPDG-VLPGDRPL-TKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQ  157 (479)
T ss_pred             eEEEEecCCCCCccHHHHHhcCcccccccccCCCC-ccCCCCcc-ccccCCccceecCCCCChHhhhhhhHHHHhhhhhh
Confidence            8877776321  1111222111000 000111110 00000000 000111110     111100000  1134689999


Q ss_pred             CCCccCCHHHHHHhhccCCcEeE
Q psy16116        585 GLPYEALCILMDIFFVGQQDSFV  607 (612)
Q Consensus       585 NLPf~vTeeDLkefFs~~gdI~~  607 (612)
                      +|+-.+...++-+.|..+|++.+
T Consensus       158 sl~~~~~l~e~~e~f~r~Gev~y  180 (479)
T KOG4676|consen  158 SLISAAILPESGESFERKGEVSY  180 (479)
T ss_pred             cchhhhcchhhhhhhhhcchhhh
Confidence            99999999999999999887654

>KOG4676|consensus

Probab=88.19  E-value=0.33  Score=52.76  Aligned_cols=161  Identities=16%  Similarity=0.093  Sum_probs=106.1

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCC----CCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccCc
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFG----RRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANG  415 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~G----rsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~~  415 (612)
                      .+-|.||..+++.+.+..+|.. |.|.++.|.-+.+-    -..-.|||.|.+...+..|.-+.+..+-++.+-|...-.
T Consensus         9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~~~   88 (479)
T KOG4676|consen    9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPYGD   88 (479)
T ss_pred             eeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEecCC
Confidence            3458899999998888875554 55788887543321    235689999999999999998777666666655544322


Q ss_pred             ----cch--hhccCCCC----------------c--chh---hhc-----c--------CCcccEEEEeCCCCCCCHHHH
Q psy16116        416 ----EDF--INVAGGNN----------------N--EAQ---AFL-----T--------RGAQVIIRMRGLPYECTAKQV  455 (612)
Q Consensus       416 ----~e~--~~~~g~~~----------------~--e~~---~~~-----~--------~~~~~~VfV~nLP~s~te~dL  455 (612)
                          .++  ......+.                .  ...   ..+     +        .+-..+++|.+|+..+...++
T Consensus        89 ~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~e~  168 (479)
T KOG4676|consen   89 EVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILPES  168 (479)
T ss_pred             CCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcchhh
Confidence                111  11000000                0  000   000     0        112477999999999999999


Q ss_pred             HHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCcccC
Q psy16116        456 IDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALSKHKESIG  512 (612)
Q Consensus       456 refF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~~~~~~ig  512 (612)
                      .+.|..+|    +|    .-.++   ..|-..-+|-|.|........||..+|..+.
T Consensus       169 ~e~f~r~G----ev----~ya~~---ask~~s~~c~~sf~~qts~~halr~~gre~k  214 (479)
T KOG4676|consen  169 GESFERKG----EV----SYAHT---ASKSRSSSCSHSFRKQTSSKHALRSHGRERK  214 (479)
T ss_pred             hhhhhhcc----hh----hhhhh---hccCCCcchhhhHhhhhhHHHHHHhcchhhh
Confidence            99999999    22    22333   3455566888999999999999998876654

>KOG4285|consensus

Probab=87.59  E-value=1.3  Score=46.92  Aligned_cols=76  Identities=22%  Similarity=0.264  Sum_probs=57.7

Q ss_pred             cEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCcccCCEE-EE
Q psy16116        439 VIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALSKHKESIGIRY-IE  517 (612)
Q Consensus       439 ~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~~~~~~iggR~-Ie  517 (612)
                      .-|-|-|+|..... -|...|+.||    +||      +.+...+|   -+-+|.|.+.-+|+|||.+|+..|+|-. |-
T Consensus       198 ~WVTVfGFppg~~s-~vL~~F~~cG----~Vv------khv~~~ng---NwMhirYssr~~A~KALskng~ii~g~vmiG  263 (350)
T KOG4285|consen  198 TWVTVFGFPPGQVS-IVLNLFSRCG----EVV------KHVTPSNG---NWMHIRYSSRTHAQKALSKNGTIIDGDVMIG  263 (350)
T ss_pred             ceEEEeccCccchh-HHHHHHHhhC----eee------eeecCCCC---ceEEEEecchhHHHHhhhhcCeeeccceEEe
Confidence            44778888876554 5666889999    563      33333344   5899999999999999999999999865 88


Q ss_pred             EEecchHHHHH
Q psy16116        518 LFRSTTAEVQQ  528 (612)
Q Consensus       518 V~~as~~e~~~  528 (612)
                      |..+..+....
T Consensus       264 VkpCtDksvi~  274 (350)
T KOG4285|consen  264 VKPCTDKSVIN  274 (350)
T ss_pred             eeecCCHHHhc
Confidence            99987766544

>KOG1996|consensus

Probab=86.82  E-value=1.3  Score=46.63  Aligned_cols=63  Identities=14%  Similarity=0.041  Sum_probs=42.7

Q ss_pred             HHHHhhHh-hcccccCeeeEEEeeCCCC--CCcceEEEEeCCHHHHHHHH-HhCCCccCceEEEEec
Q psy16116        350 SLLLNTIP-GYEQVLGLGGVALCLSAFG--RRNGEAIVRFIDQEHRDMAL-KRHKHHIDKRYIEVTK  412 (612)
Q Consensus       350 ~~~e~~fk-eff~~~~v~~V~ii~d~~G--rsrG~AFVeF~S~EdA~kAL-~~ng~~IggR~IeV~~  412 (612)
                      +++++..+ +|.+-+.+..|.|...+.-  ...---||+|+..++|-+|+ .+||.|+|||.|.-..
T Consensus       297 ~elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~F  363 (378)
T KOG1996|consen  297 EELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACF  363 (378)
T ss_pred             HHHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeehee
Confidence            44555555 4555455666665554321  11224699999999999999 5899999999876543

>KOG0151|consensus

Probab=86.50  E-value=0.93  Score=52.60  Aligned_cols=71  Identities=17%  Similarity=0.140  Sum_probs=52.9

Q ss_pred             eecCCCHHHHHhhHh-hcccccCeeeEEEeeCCC----CCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEecc
Q psy16116        343 LVQNIWLSLLLNTIP-GYEQVLGLGGVALCLSAF----GRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKA  413 (612)
Q Consensus       343 lV~nLp~~~~e~~fk-eff~~~~v~~V~ii~d~~----GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s  413 (612)
                      +++||+.+.+++++- .|+..+.+.+|+|+-...    -|.+-+|||-|-+..||++|++ +++..+.++.+++-++
T Consensus       178 yv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~gWg  254 (877)
T KOG0151|consen  178 YVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLGWG  254 (877)
T ss_pred             eeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeeeccc
Confidence            366777777766665 566667788999876542    2456799999999999999997 7777777777766444

>KOG1996|consensus

Probab=86.23  E-value=1.7  Score=45.84  Aligned_cols=61  Identities=21%  Similarity=0.177  Sum_probs=43.7

Q ss_pred             HHHHHHHHhcCCCCccccccCceeEEEeeCCCC--CceeEEEEEeCCHHHHHHHHH-hCCcccCCEEEEEEe
Q psy16116        452 AKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDG--KATGDAFVLFEKEEEADKALS-KHKESIGIRYIELFR  520 (612)
Q Consensus       452 e~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~G--rskG~AFV~F~s~edA~kAL~-~~~~~iggR~IeV~~  520 (612)
                      ++++++-.++||        .+..|.|..+++-  ---=--||+|...++|.+|+- +||.++|||.+.-.-
T Consensus       300 ede~keEceKyg--------~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~F  363 (378)
T KOG1996|consen  300 EDETKEECEKYG--------KVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACF  363 (378)
T ss_pred             HHHHHHHHHhhc--------ceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeehee
Confidence            567888889999        3344555444321  111237999999999999995 799999999876543

>KOG2193|consensus

Probab=84.84  E-value=1.2  Score=48.96  Aligned_cols=69  Identities=22%  Similarity=0.237  Sum_probs=53.0

Q ss_pred             EEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHHh-C-CcccCCEEEE
Q psy16116        440 IIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALSK-H-KESIGIRYIE  517 (612)
Q Consensus       440 ~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~~-~-~~~iggR~Ie  517 (612)
                      .+|++||...++-.|+...|.+..+       ...+-.++      ..||+||...+..-+.+|++. + +..+.|+.++
T Consensus         3 klyignL~p~~~psdl~svfg~ak~-------~~~g~fl~------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e   69 (584)
T KOG2193|consen    3 KLYIGNLSPQVTPSDLESVFGDAKI-------PGSGQFLV------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQE   69 (584)
T ss_pred             cccccccCCCCChHHHHHHhccccC-------CCCcceee------ecceeeccCCchhhhhhhHHhhchhhhhcCceee
Confidence            4899999999999999999987652       12222222      468999999999999999984 3 3567788887


Q ss_pred             EEec
Q psy16116        518 LFRS  521 (612)
Q Consensus       518 V~~a  521 (612)
                      |..+
T Consensus        70 ~~~s   73 (584)
T KOG2193|consen   70 VEHS   73 (584)
T ss_pred             ccch
Confidence            7644

>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN)

Probab=84.65  E-value=2.8  Score=36.70  Aligned_cols=53  Identities=15%  Similarity=0.364  Sum_probs=38.4

Q ss_pred             ccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHHh
Q psy16116        438 QVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALSK  506 (612)
Q Consensus       438 ~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~~  506 (612)
                      +++.+|. .|......||.++|+.||    .|     .|..+.|      .-|||...+.+.+..|+..
T Consensus         9 dHVFhlt-FPkeWK~~DI~qlFspfG----~I-----~VsWi~d------TSAfV~l~~r~~~~~v~~~   61 (87)
T PF08675_consen    9 DHVFHLT-FPKEWKTSDIYQLFSPFG----QI-----YVSWIND------TSAFVALHNRDQAKVVMNT   61 (87)
T ss_dssp             CCEEEEE---TT--HHHHHHHCCCCC----CE-----EEEEECT------TEEEEEECCCHHHHHHHHH
T ss_pred             ceEEEEe-CchHhhhhhHHHHhccCC----cE-----EEEEEcC------CcEEEEeecHHHHHHHHHH
Confidence            4566666 999999999999999999    33     3555533      2599999999999998863

; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.

>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi)

Probab=84.55  E-value=1.7  Score=38.26  Aligned_cols=70  Identities=16%  Similarity=0.263  Sum_probs=45.5

Q ss_pred             EEEEeCCHHHHHHHHHh--CCCccCceEEEEecc--CccchhhccCCCCcchhhhccCCcccEEEEeCCCCCCCHHHHHH
Q psy16116        382 AIVRFIDQEHRDMALKR--HKHHIDKRYIEVTKA--NGEDFINVAGGNNNEAQAFLTRGAQVIIRMRGLPYECTAKQVID  457 (612)
Q Consensus       382 AFVeF~S~EdA~kAL~~--ng~~IggR~IeV~~s--~~~e~~~~~g~~~~e~~~~~~~~~~~~VfV~nLP~s~te~dLre  457 (612)
                      |.|+|..++=|++-+++  +.-.+++..++|..+  ......+.        + ....-..++|.|.|||...++++|++
T Consensus         1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~--------q-v~~~vs~rtVlvsgip~~l~ee~l~D   71 (88)
T PF07292_consen    1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKF--------Q-VFSGVSKRTVLVSGIPDVLDEEELRD   71 (88)
T ss_pred             CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEE--------E-EEEcccCCEEEEeCCCCCCChhhhee
Confidence            68999999999999975  344577777666432  21110000        0 00112346799999999999999998


Q ss_pred             HHh
Q psy16116        458 FFE  460 (612)
Q Consensus       458 fF~  460 (612)
                      ..+
T Consensus        72 ~Le   74 (88)
T PF07292_consen   72 KLE   74 (88)
T ss_pred             eEE
Confidence            643

This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].

>KOG4285|consensus

Probab=83.23  E-value=5.3  Score=42.48  Aligned_cols=70  Identities=16%  Similarity=0.137  Sum_probs=48.2

Q ss_pred             cceecCCCHH---HHHhhHhhcccccCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHHhCCCccCceE-EEEeccCcc
Q psy16116        341 CPLVQNIWLS---LLLNTIPGYEQVLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRY-IEVTKANGE  416 (612)
Q Consensus       341 ~vlV~nLp~~---~~e~~fkeff~~~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~-IeV~~s~~~  416 (612)
                      -|-|.+.+..   .+...|..|+.   |.+.+     .++.--+-+|.|.+.-+|++||.+++..|+|.. |-|..|..+
T Consensus       199 WVTVfGFppg~~s~vL~~F~~cG~---Vvkhv-----~~~ngNwMhirYssr~~A~KALskng~ii~g~vmiGVkpCtDk  270 (350)
T KOG4285|consen  199 WVTVFGFPPGQVSIVLNLFSRCGE---VVKHV-----TPSNGNWMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKPCTDK  270 (350)
T ss_pred             eEEEeccCccchhHHHHHHHhhCe---eeeee-----cCCCCceEEEEecchhHHHHhhhhcCeeeccceEEeeeecCCH
Confidence            4445555554   45666777775   33322     232224789999999999999999999999865 677887765


Q ss_pred             ch
Q psy16116        417 DF  418 (612)
Q Consensus       417 e~  418 (612)
                      ..
T Consensus       271 sv  272 (350)
T KOG4285|consen  271 SV  272 (350)
T ss_pred             HH
Confidence            43

>KOG2591|consensus

Probab=81.28  E-value=4.8  Score=45.87  Aligned_cols=69  Identities=17%  Similarity=0.330  Sum_probs=50.2

Q ss_pred             ccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH---hCCcccCCE
Q psy16116        438 QVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS---KHKESIGIR  514 (612)
Q Consensus       438 ~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~---~~~~~iggR  514 (612)
                      .+.|.||-||.++-.++|+.+|+.-.   |.   ...++.+-.+.      --||+|++.+||++|.+   ...+.|.|+
T Consensus       175 RcIvilREIpettp~e~Vk~lf~~en---cP---k~iscefa~N~------nWyITfesd~DAQqAykylreevk~fqgK  242 (684)
T KOG2591|consen  175 RCIVILREIPETTPIEVVKALFKGEN---CP---KVISCEFAHND------NWYITFESDTDAQQAYKYLREEVKTFQGK  242 (684)
T ss_pred             eeEEEEeecCCCChHHHHHHHhccCC---CC---CceeeeeeecC------ceEEEeecchhHHHHHHHHHHHHHhhcCc
Confidence            46789999999999999999998633   21   22335554332      28999999999999985   245667777


Q ss_pred             EEEE
Q psy16116        515 YIEL  518 (612)
Q Consensus       515 ~IeV  518 (612)
                      .|--
T Consensus       243 pImA  246 (684)
T KOG2591|consen  243 PIMA  246 (684)
T ss_pred             chhh
Confidence            7643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	612
2dha_A	123	Solution Structure Of The Second Rna Recognition Mo		2e-28
2lxu_A	108	Solution Nmr Structure Of The Eukaryotic Rna Recogn		7e-16
2hgm_A	126	Nmr Structure Of The Second Qrrm Domain Of Human Hn		2e-15
2db1_A	118	Solution Structure Of The Rna Binding Domain In Het		3e-14
2lmi_A	107	Nmr Structure Of The Protein Bc040485 From Homo Sap		6e-14
1wg5_A	104	Solution Structure Of The First Rrm Domain In Heter		7e-14
2hgl_A	136	Nmr Structure Of The First Qrrm Domain Of Human Hnr		7e-14
1wel_A	124	Solution Structure Of Rna Binding Domain In Np_0060		2e-08
1wez_A	102	Solution Structure Of Rrm Domain In Heterogeneous N		2e-07
2hgn_A	139	Nmr Structure Of The Third Qrrm Domain Of Human Hnr		3e-07
2dgw_A	91	Solution Structure Of The Second Rna Recognition Mo		4e-06
2dnn_A	109	Solution Structure Of Rna Binding Domain In Rna-Bin		2e-04

>pdb|2DHA|A Chain A, Solution Structure Of The Second Rna Recognition Motif In Hypothetical Protein Flj201171 Length = 123

Iteration: 1
 Score =  124 bits (311), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 62/106 (58%), Positives = 76/106 (71%), Gaps = 4/106 (3%)
Query: 427 NEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKA 486
           NE   FL++  QVI+RMRGLP+  TA++V+ FF       C +  G+EG+LFV  PDG+ 
Sbjct: 12  NEVAQFLSKENQVIVRMRGLPFTATAEEVVAFFG----QHCPITGGKEGILFVTYPDGRP 67
Query: 487 TGDAFVLFEKEEEADKALSKHKESIGIRYIELFRSTTAEVQQVLNK 532
           TGDAFVLF  EE A  AL KHK+ +G RYIELFRST AEVQQVLN+
Sbjct: 68  TGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEVQQVLNR 113

>pdb|2LXU|A Chain A, Solution Nmr Structure Of The Eukaryotic Rna Recognition Motif, Rrm1, From The Heterogeneous Nuclear Ribonucleoprotein H From Homo Sapiens, Northeast Structural Genomics Consortium (Nesg) Target Hr8614a Length = 108

Iteration: 1
 Score = 82.4 bits (202), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 36/98 (36%), Positives = 61/98 (62%), Gaps = 5/98 (5%)
Query: 436 GAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFE 495
           G   ++++RGLP+ C+A +V  FF     + C + +G +G+ F+   +G+ +G+AFV  E
Sbjct: 5   GEGFVVKVRGLPWSCSADEVQRFF-----SDCKIQNGAQGIRFIYTREGRPSGEAFVELE 59
Query: 496 KEEEADKALSKHKESIGIRYIELFRSTTAEVQQVLNKT 533
            E+E   AL K +E++G RY+E+F+S   E+  VL  T
Sbjct: 60  SEDEVKLALKKDRETMGHRYVEVFKSNNVEMDWVLKHT 97

>pdb|2HGM|A Chain A, Nmr Structure Of The Second Qrrm Domain Of Human Hnrnp F Length = 126

Iteration: 1
 Score = 80.9 bits (198), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 41/87 (47%), Positives = 58/87 (66%), Gaps = 7/87 (8%)
Query: 441 IRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEA 500
           +R+RGLP+ CT ++++ FF +G E   N      G+     P+GK TG+AFV F  +E A
Sbjct: 45  VRLRGLPFGCTKEEIVQFF-SGLEIVPN------GITLPVDPEGKITGEAFVQFASQELA 97
Query: 501 DKALSKHKESIGIRYIELFRSTTAEVQ 527
           +KAL KHKE IG RYIE+F+S+  EV+
Sbjct: 98  EKALGKHKERIGHRYIEVFKSSQEEVR 124

>pdb|2DB1|A Chain A, Solution Structure Of The Rna Binding Domain In Heterogeneous Nuclear Ribonucleoprotein F Homolog Length = 118

Iteration: 1
 Score = 77.0 bits (188), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 36/98 (36%), Positives = 59/98 (60%), Gaps = 5/98 (5%)
Query: 436 GAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFE 495
           G   ++++RGLP+ C+ + V +F      + C + DG  GV F+   +G+ +G+AFV  E
Sbjct: 15  GEGYVVKLRGLPWSCSIEDVQNFL-----SDCTIHDGVAGVHFIYTREGRQSGEAFVELE 69
Query: 496 KEEEADKALSKHKESIGIRYIELFRSTTAEVQQVLNKT 533
            E++   AL K +ES+G RYIE+F+S   E+  VL  +
Sbjct: 70  SEDDVKLALKKDRESMGHRYIEVFKSHRTEMDWVLKHS 107

>pdb|2LMI|A Chain A, Nmr Structure Of The Protein Bc040485 From Homo Sapiens Length = 107

Iteration: 1
 Score = 75.9 bits (185), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 33/91 (36%), Positives = 55/91 (60%), Gaps = 5/91 (5%)
Query: 440 IIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEE 499
           +IR +GLP+ CT + V++FF     + C + +GE G+ F+   DGK  GDA +  E E++
Sbjct: 13  LIRAQGLPWSCTMEDVLNFF-----SDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQD 67
Query: 500 ADKALSKHKESIGIRYIELFRSTTAEVQQVL 530
             KAL KH+  +G RY+E++     +V  ++
Sbjct: 68  VQKALEKHRMYMGQRYVEVYEINNEDVDALM 98

>pdb|1WG5|A Chain A, Solution Structure Of The First Rrm Domain In Heterogeneous Nuclear Ribonucleoprotein H Length = 104

Iteration: 1
 Score = 75.9 bits (185), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 39/87 (44%), Positives = 58/87 (66%), Gaps = 7/87 (8%)
Query: 441 IRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEA 500
           +R+RGLP+ C+ ++++ FF +G E   N      G+       G++TG+AFV F  +E A
Sbjct: 18  VRLRGLPFGCSKEEIVQFF-SGLEIVPN------GMTLPVDFQGRSTGEAFVQFASQEIA 70
Query: 501 DKALSKHKESIGIRYIELFRSTTAEVQ 527
           +KAL KHKE IG RYIE+F+S+ AEV+
Sbjct: 71  EKALKKHKERIGHRYIEIFKSSRAEVR 97

>pdb|2HGL|A Chain A, Nmr Structure Of The First Qrrm Domain Of Human Hnrnp F Length = 136

Iteration: 1
 Score = 75.5 bits (184), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 35/98 (35%), Positives = 58/98 (59%), Gaps = 5/98 (5%)
Query: 436 GAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFE 495
           G   ++++RGLP+ C+ + V +F      + C + DG  GV F+   +G+ +G+AFV   
Sbjct: 42  GEGFVVKLRGLPWSCSVEDVQNFL-----SDCTIHDGAAGVHFIYTREGRQSGEAFVELG 96
Query: 496 KEEEADKALSKHKESIGIRYIELFRSTTAEVQQVLNKT 533
            E++   AL K +ES+G RYIE+F+S   E+  VL  +
Sbjct: 97  SEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVLKHS 134

>pdb|1WEL|A Chain A, Solution Structure Of Rna Binding Domain In Np_006038 Length = 124

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 7/82 (8%)
Query: 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEK 496
           A   + ++GLP+E   K VIDFF+       +++  E+ +     P+GKATG+ FV F  
Sbjct: 24  AGFCVYLKGLPFEAENKHVIDFFK-----KLDIV--EDSIYIAYGPNGKATGEGFVEFRN 76
Query: 497 EEEADKALSKHKESIGIRYIEL 518
           E +   AL +HK+ +G R+I++
Sbjct: 77  EADYKAALCRHKQYMGNRFIQV 98

>pdb|1WEZ|A Chain A, Solution Structure Of Rrm Domain In Heterogeneous Nuclear Ribonucleoprotein H' Length = 102

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 9/84 (10%)
Query: 441 IRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEA 500
           + MRGLPY  T   + +FF        ++  G         PDG+ TG+A V F   E+A
Sbjct: 18  VHMRGLPYRATENDIYNFFSPLNPMRVHIEIG---------PDGRVTGEADVEFATHEDA 68
Query: 501 DKALSKHKESIGIRYIELFRSTTA 524
             A++K K ++  RY+ELF ++TA
Sbjct: 69  VAAMAKDKANMQHRYVELFLNSTA 92

>pdb|2HGN|A Chain A, Nmr Structure Of The Third Qrrm Domain Of Human Hnrnp F Length = 139

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 45/83 (54%), Gaps = 9/83 (10%)
Query: 441 IRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEA 500
           + MRGLPY+ T   + +FF        ++  G         PDG+ TG+A V F   EEA
Sbjct: 49  VHMRGLPYKATENDIYNFFSPLNPVRVHIEIG---------PDGRVTGEADVEFATHEEA 99
Query: 501 DKALSKHKESIGIRYIELFRSTT 523
             A+SK + ++  RYIELF ++T
Sbjct: 100 VAAMSKDRANMQHRYIELFLNST 122

>pdb|2DGW|A Chain A, Solution Structure Of The Second Rna Recognition Motif In Rna-Binding Protein 19 Length = 91

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 9/84 (10%)
Query: 441 IRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEA 500
           +++RG P+  T K V++F       +  +         V+   G  TG  FV F  EEE 
Sbjct: 13  VKLRGAPFNVTEKNVMEFLAPLKPVAIRI---------VRNAHGNKTGYIFVDFSNEEEV 63
Query: 501 DKALSKHKESIGIRYIELFRSTTA 524
            +AL  ++E +G RYIE+FR  + 
Sbjct: 64  KQALKCNREYMGGRYIEVFREKSG 87

>pdb|2DNN|A Chain A, Solution Structure Of Rna Binding Domain In Rna-Binding Protein 12 Length = 109

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 332 PTPGNPVALCPLVQNIWLSLLLNTIPGYEQVLGLGGVALCLSAFGRRNGEAIVRFIDQEH 391
           P P NP  L   V  +  S + N +  +   L +  V L     GR NG  +V+F+  + 
Sbjct: 9   PLPINPDDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQD 68
Query: 392 RDMALKRHKHHIDKRYIEVTKANGEDFINVAGGN 425
              ALKR++  + +RY+EV+ A    ++  AGG+
Sbjct: 69  TFEALKRNRMLMIQRYVEVSPATERQWV-AAGGH 101

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	612
2hgl_A	136	HNRPF protein, heterogeneous nuclear ribonucleopro	1e-39
2hgl_A	136	HNRPF protein, heterogeneous nuclear ribonucleopro	2e-14
2hgl_A	136	HNRPF protein, heterogeneous nuclear ribonucleopro	3e-09
2hgn_A	139	Heterogeneous nuclear ribonucleoprotein F; RNA rec	2e-39
2hgn_A	139	Heterogeneous nuclear ribonucleoprotein F; RNA rec	5e-11
2hgn_A	139	Heterogeneous nuclear ribonucleoprotein F; RNA rec	2e-09
2dha_A	123	FLJ20171 protein; RRM domain, structural genomics,	2e-39
2dha_A	123	FLJ20171 protein; RRM domain, structural genomics,	4e-14
2dha_A	123	FLJ20171 protein; RRM domain, structural genomics,	3e-09
2hgm_A	126	HNRPF protein, heterogeneous nuclear ribonucleopro	6e-37
2hgm_A	126	HNRPF protein, heterogeneous nuclear ribonucleopro	9e-13
2hgm_A	126	HNRPF protein, heterogeneous nuclear ribonucleopro	1e-09
2db1_A	118	Heterogeneous nuclear ribonucleoprotein F; RRM dom	8e-33
2db1_A	118	Heterogeneous nuclear ribonucleoprotein F; RRM dom	5e-15
2db1_A	118	Heterogeneous nuclear ribonucleoprotein F; RRM dom	1e-09
1wez_A	102	HnRNP H', FTP-3, heterogeneous nuclear ribonucleop	8e-33
1wez_A	102	HnRNP H', FTP-3, heterogeneous nuclear ribonucleop	5e-12
1wez_A	102	HnRNP H', FTP-3, heterogeneous nuclear ribonucleop	7e-09
2lmi_A	107	GRSF-1, G-rich sequence factor 1; G-rich RNA seque	5e-32
2lmi_A	107	GRSF-1, G-rich sequence factor 1; G-rich RNA seque	2e-16
2lmi_A	107	GRSF-1, G-rich sequence factor 1; G-rich RNA seque	2e-11
1wg5_A	104	Heterogeneous nuclear ribonucleoprotein H; structu	2e-30
1wg5_A	104	Heterogeneous nuclear ribonucleoprotein H; structu	4e-14
1wg5_A	104	Heterogeneous nuclear ribonucleoprotein H; structu	8e-12
2dgw_A	91	Probable RNA-binding protein 19; RRM domain, struc	2e-28
2dgw_A	91	Probable RNA-binding protein 19; RRM domain, struc	3e-11
2dgw_A	91	Probable RNA-binding protein 19; RRM domain, struc	4e-09
1wel_A	124	RNA-binding protein 12; structural genomics, NPPSF	3e-28
1wel_A	124	RNA-binding protein 12; structural genomics, NPPSF	9e-13
1wel_A	124	RNA-binding protein 12; structural genomics, NPPSF	9e-13
2cpy_A	114	RNA-binding protein 12; RRM domain, structural gen	5e-28
2cpy_A	114	RNA-binding protein 12; RRM domain, structural gen	1e-12
2cpy_A	114	RNA-binding protein 12; RRM domain, structural gen	5e-09
2dnn_A	109	RNA-binding protein 12; RRM domain, RBD, structura	2e-26
2dnn_A	109	RNA-binding protein 12; RRM domain, RBD, structura	3e-15
2dnn_A	109	RNA-binding protein 12; RRM domain, RBD, structura	9e-12
2cqp_A	98	RNA-binding protein 12; RNA recognition motif, RRM	1e-24
2cqp_A	98	RNA-binding protein 12; RNA recognition motif, RRM	2e-14
2cqp_A	98	RNA-binding protein 12; RNA recognition motif, RRM	9e-08
2ek1_A	95	RNA-binding protein 12; RNA recognition motif, dim	2e-23
2ek1_A	95	RNA-binding protein 12; RNA recognition motif, dim	9e-15
2ek1_A	95	RNA-binding protein 12; RNA recognition motif, dim	2e-07
1l3k_A	196	Heterogeneous nuclear ribonucleoprotein A1; nuclea	2e-10
1l3k_A	196	Heterogeneous nuclear ribonucleoprotein A1; nuclea	3e-05
1s79_A	103	Lupus LA protein; RRM, alpha/beta, RNA binding pro	1e-08
2cjk_A	167	Nuclear polyadenylated RNA-binding protein 4; HRP1	1e-07
2cjk_A	167	Nuclear polyadenylated RNA-binding protein 4; HRP1	3e-04
1fje_B	175	Nucleolin RBD12, protein C23; RNP, RRM, RNA bindin	4e-07
1fje_B	175	Nucleolin RBD12, protein C23; RNP, RRM, RNA bindin	4e-06
2ghp_A	292	U4/U6 snRNA-associated splicing factor PRP24; RNA	1e-06
2ghp_A	292	U4/U6 snRNA-associated splicing factor PRP24; RNA	4e-06
2ghp_A	292	U4/U6 snRNA-associated splicing factor PRP24; RNA	8e-04
2g4b_A	172	Splicing factor U2AF 65 kDa subunit; protein-RNA c	2e-06
2cpe_A	113	RNA-binding protein EWS; RNA recognition motif, RR	3e-06
3nmr_A	175	Cugbp ELAV-like family member 1; RRM, PRE-mRNA spl	3e-06
2dnh_A	105	Bruno-like 5, RNA binding protein; RRM domain, RBD	4e-06
2yh0_A	198	Splicing factor U2AF 65 kDa subunit; PRE-mRNA spli	4e-06
2dgv_A	92	HnRNP M, heterogeneous nuclear ribonucleoprotein M	7e-06
2qfj_A	216	FBP-interacting repressor; protein-DNA complex; HE	8e-06
2la6_A	99	RNA-binding protein FUS; structural genomics, nort	1e-05
2f3j_A	177	RNA and export factor binding protein 2; RRM domai	1e-05
2j76_E	100	EIF-4B, EIF4B, eukaryotic translation initiation f	1e-05
1fj7_A	101	Nucleolin RBD1, protein C23; RNP, RRM, RNA binding	1e-05
3sde_A	261	Paraspeckle component 1; RRM, anti parallel right	2e-05
1wi8_A	104	EIF-4B, eukaryotic translation initiation factor 4	2e-05
2xs2_A	102	Deleted in azoospermia-like; RNA binding protein-R	2e-05
2do0_A	114	HnRNP M, heterogeneous nuclear ribonucleoprotein M	2e-05
2jvr_A	111	Nucleolar protein 3; RNA recognition motif, nucleu	2e-05
2cph_A	107	RNA binding motif protein 19; RNA recognition moti	2e-05
2dgs_A	99	DAZ-associated protein 1; RRM domain, structural g	2e-05
2dhx_A	104	Poly (ADP-ribose) polymerase family, member 10 var	2e-05
1iqt_A	75	AUF1, heterogeneous nuclear ribonucleoprotein D0;	3e-05
2cq4_A	114	RNA binding motif protein 23; RRM domain, structur	3e-05
3smz_A	284	Protein raver-1, ribonucleoprotein PTB-binding 1;	4e-05
3smz_A	284	Protein raver-1, ribonucleoprotein PTB-binding 1;	5e-05
2voo_A	193	Lupus LA protein; RNA-binding protein, RNA recogni	5e-05
2mss_A	75	Protein (musashi1); RNA-binding domain, RNA bindin	6e-05
2lcw_A	116	RNA-binding protein FUS; RRM, nucleic acid binding	7e-05
2do4_A	100	Squamous cell carcinoma antigen recognized by T- c	8e-05
1x4h_A	111	RNA-binding protein 28; structural genomics, RRM d	8e-05
3ulh_A	107	THO complex subunit 4; nuclear protein, RNA bindin	9e-05
1uaw_A	77	Mouse-musashi-1; RNP-type structure, RNA binding p	1e-04
1x4c_A	108	Splicing factor, arginine/serine-rich 1; structura	1e-04
2e44_A	96	Insulin-like growth factor 2 mRNA binding protein	2e-04
2kt5_A	124	RNA and export factor-binding protein 2; chaperone	2e-04
2dgp_A	106	Bruno-like 4, RNA binding protein; RRM domain, str	2e-04
1fxl_A	167	Paraneoplastic encephalomyelitis antigen HUD; prot	3e-04
3s7r_A	87	Heterogeneous nuclear ribonucleoprotein A/B; ferre	3e-04
2rs2_A	109	Musashi-1, RNA-binding protein musashi homolog 1;	3e-04
1rk8_A	165	CG8781-PA, CG8781-PA protein; mRNA processing, RRM	3e-04
2ywk_A	95	Putative RNA-binding protein 11; RRM-domain, struc	3e-04
3beg_B	115	Splicing factor, arginine/serine-rich 1; kinase, S	3e-04
2dnl_A	114	Cytoplasmic polyadenylation element binding protei	3e-04
1x5o_A	114	RNA binding motif, single-stranded interacting pro	4e-04
1b7f_A	168	Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP	5e-04
2e5g_A	94	U6 snRNA-specific terminal uridylyltransferase 1;	5e-04
1x4b_A	116	Heterogeneous nuclear ribonucleoproteins A2/B1; st	6e-04
1whw_A	99	Hypothetical protein riken cDNA 1200009A02; RNA re	6e-04
3lqv_A	115	PRE-mRNA branch site protein P14; cysless mutant,	7e-04
2e5h_A	94	Zinc finger CCHC-type and RNA-binding motif- conta	7e-04
2cqd_A	116	RNA-binding region containing protein 1; RNA recog	8e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-04
2fc9_A	101	NCL protein; structure genomics, RRM_1 domain, str	8e-04
2dng_A	103	Eukaryotic translation initiation factor 4H; RRM d	9e-04

>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A Length = 136

 Score =  140 bits (354), Expect = 1e-39
 Identities = 42/143 (29%), Positives = 69/143 (48%), Gaps = 12/143 (8%)

Query: 394 MALKRHKHHIDKRYIEVTKANGEDFINVAGGNNNEAQAFLT---RGAQVIIRMRGLPYEC 450
           M    H HH     +      G    ++ GG      + +     G   ++++RGLP+ C
Sbjct: 1   MGSSHHHHHHSSGLV----PRGSHMASMTGGQQMGRGSMMLGPEGGEGFVVKLRGLPWSC 56

Query: 451 TAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALSKHKES 510
           + + V +F        C + DG  GV F+   +G+ +G+AFV    E++   AL K +ES
Sbjct: 57  SVEDVQNFLS-----DCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKKDRES 111

Query: 511 IGIRYIELFRSTTAEVQQVLNKT 533
           +G RYIE+F+S   E+  VL  +
Sbjct: 112 MGHRYIEVFKSHRTEMDWVLKHS 134

>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A Length = 136

 Score = 69.3 bits (169), Expect = 2e-14
 Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 5/83 (6%)

Query: 63  EHILEFLGEFASNIVYQGVHMVYNSQGQPSGEAFIQMDSEHSAYLAAQLRHNRNMIFGKK 122
           E +  FL +   +    GVH +Y  +G+ SGEAF+++ SE    +A + +   +M     
Sbjct: 59  EDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESM----G 113

Query: 123 QRYIEVFQCSGEDMNLVLNGVLP 145
            RYIEVF+    +M+ VL    P
Sbjct: 114 HRYIEVFKSHRTEMDWVLKHSGP 136

>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A Length = 136

 Score = 55.0 bits (132), Expect = 3e-09
 Identities = 20/64 (31%), Positives = 31/64 (48%)

Query: 358 GYEQVLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGED 417
                 G  GV    +  GR++GEA V    ++   MALK+ +  +  RYIEV K++  +
Sbjct: 67  DCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEVFKSHRTE 126

Query: 418 FINV 421
              V
Sbjct: 127 MDWV 130

>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A Length = 139

 Score =  140 bits (354), Expect = 2e-39
 Identities = 38/145 (26%), Positives = 59/145 (40%), Gaps = 18/145 (12%)

Query: 394 MALKRHKHHIDKRYIEVTKANGEDFINVAGG-----NNNEAQAFLTRGAQVIIRMRGLPY 448
           M    H HH     +      G    ++ GG      + +++  +       + MRGLPY
Sbjct: 1   MGSSHHHHHHSSGLV----PRGSHMASMTGGQQMGRGSGDSEFTVQSTTGHCVHMRGLPY 56

Query: 449 ECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALSKHK 508
           + T   + +FF                V     PDG+ TG+A V F   EEA  A+SK +
Sbjct: 57  KATENDIYNFFSPL---------NPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDR 107

Query: 509 ESIGIRYIELFRSTTAEVQQVLNKT 533
            ++  RYIELF ++T         +
Sbjct: 108 ANMQHRYIELFLNSTTGASNGAYSS 132

>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A Length = 139

 Score = 59.9 bits (145), Expect = 5e-11
 Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 9/75 (12%)

Query: 63  EHILEFLGEFASNIVYQGVHMVYNSQGQPSGEAFIQMDSEHSAYLAAQLRHNRNMIFGKK 122
             I  F      N V   VH+     G+ +GEA ++  +   A +AA  +   NM    +
Sbjct: 61  NDIYNFFSPL--NPV--RVHIEIGPDGRVTGEADVEFATHEEA-VAAMSKDRANM----Q 111

Query: 123 QRYIEVFQCSGEDMN 137
            RYIE+F  S    +
Sbjct: 112 HRYIELFLNSTTGAS 126

>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A Length = 139

 Score = 55.2 bits (133), Expect = 2e-09
 Identities = 17/63 (26%), Positives = 27/63 (42%)

Query: 363 LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGEDFINVA 422
           L    V + +   GR  GEA V F   E    A+ + + ++  RYIE+   +     N A
Sbjct: 70  LNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNSTTGASNGA 129

Query: 423 GGN 425
             +
Sbjct: 130 YSS 132

>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 123

 Score =  139 bits (352), Expect = 2e-39
 Identities = 64/116 (55%), Positives = 80/116 (68%), Gaps = 4/116 (3%)

Query: 420 NVAGGNNNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFV 479
           +  GG +NE   FL++  QVI+RMRGLP+  TA++V+ FF       C +  G+EG+LFV
Sbjct: 5   SSGGGTSNEVAQFLSKENQVIVRMRGLPFTATAEEVVAFFG----QHCPITGGKEGILFV 60

Query: 480 KKPDGKATGDAFVLFEKEEEADKALSKHKESIGIRYIELFRSTTAEVQQVLNKTME 535
             PDG+ TGDAFVLF  EE A  AL KHK+ +G RYIELFRST AEVQQVLN+   
Sbjct: 61  TYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEVQQVLNRFSS 116

>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 123

 Score = 68.4 bits (167), Expect = 4e-14
 Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 6/89 (6%)

Query: 63  EHILEFLGEFAS-NIVYQGVHMVYNSQGQPSGEAFIQMDSEHSAYLAAQLRHNRNMIFGK 121
           E ++ F G+        +G+  V    G+P+G+AF+    E  A  A + +H   +    
Sbjct: 38  EEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALR-KHKDLL---- 92

Query: 122 KQRYIEVFQCSGEDMNLVLNGVLPPTSPA 150
            +RYIE+F+ +  ++  VLN     + P+
Sbjct: 93  GKRYIELFRSTAAEVQQVLNRFSSASGPS 121

>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 123

 Score = 54.1 bits (130), Expect = 3e-09
 Identities = 19/58 (32%), Positives = 30/58 (51%)

Query: 364 GLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGEDFINV 421
           G  G+       GR  G+A V F  +E+   AL++HK  + KRYIE+ ++   +   V
Sbjct: 53  GKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEVQQV 110

>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A Length = 126

 Score =  133 bits (335), Expect = 6e-37
 Identities = 45/135 (33%), Positives = 66/135 (48%), Gaps = 12/135 (8%)

Query: 394 MALKRHKHHIDKRYIEVTKANGEDFINVAGGNN-NEAQAFLTRGAQVIIRMRGLPYECTA 452
           M    H HH     +      G    ++ GG                 +R+RGLP+ CT 
Sbjct: 1   MGSSHHHHHHSSGLV----PRGSHMASMTGGQQMGRGSNSADSANDGFVRLRGLPFGCTK 56

Query: 453 KQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALSKHKESIG 512
           ++++ FF         ++    G+     P+GK TG+AFV F  +E A+KAL KHKE IG
Sbjct: 57  EEIVQFFS-----GLEIV--PNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIG 109

Query: 513 IRYIELFRSTTAEVQ 527
            RYIE+F+S+  EV+
Sbjct: 110 HRYIEVFKSSQEEVR 124

>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A Length = 126

 Score = 64.5 bits (157), Expect = 9e-13
 Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 7/75 (9%)

Query: 63  EHILEFLGEFASNIVYQGVHMVYNSQGQPSGEAFIQMDSEHSAYLAAQLRHNRNMIFGKK 122
           E I++F       IV  G+ +  + +G+ +GEAF+Q  S+  A  A   +H   +     
Sbjct: 57  EEIVQFFSGL--EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERI----G 109

Query: 123 QRYIEVFQCSGEDMN 137
            RYIEVF+ S E++ 
Sbjct: 110 HRYIEVFKSSQEEVR 124

>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A Length = 126

 Score = 55.7 bits (134), Expect = 1e-09
 Identities = 22/54 (40%), Positives = 32/54 (59%)

Query: 367 GVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGEDFIN 420
           G+ L +   G+  GEA V+F  QE  + AL +HK  I  RYIEV K++ E+  +
Sbjct: 72  GITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEEVRS 125

>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 118

 Score =  121 bits (304), Expect = 8e-33
 Identities = 38/112 (33%), Positives = 63/112 (56%), Gaps = 7/112 (6%)

Query: 424 GNNNEAQAFLTR--GAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKK 481
           G++  +   L    G   ++++RGLP+ C+ + V +F        C + DG  GV F+  
Sbjct: 1   GSSGSSGMMLGPEGGEGYVVKLRGLPWSCSIEDVQNFLS-----DCTIHDGVAGVHFIYT 55

Query: 482 PDGKATGDAFVLFEKEEEADKALSKHKESIGIRYIELFRSTTAEVQQVLNKT 533
            +G+ +G+AFV  E E++   AL K +ES+G RYIE+F+S   E+  VL  +
Sbjct: 56  REGRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVFKSHRTEMDWVLKHS 107

>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 118

 Score = 70.7 bits (173), Expect = 5e-15
 Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 5/91 (5%)

Query: 63  EHILEFLGEFASNIVYQGVHMVYNSQGQPSGEAFIQMDSEHSAYLAAQLRHNRNMIFGKK 122
           E +  FL +   +    GVH +Y  +G+ SGEAF++++SE    LA + +   +M     
Sbjct: 32  EDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESM----G 86

Query: 123 QRYIEVFQCSGEDMNLVLNGVLPPTSPAISP 153
            RYIEVF+    +M+ VL    P ++   S 
Sbjct: 87  HRYIEVFKSHRTEMDWVLKHSGPNSASGPSS 117

>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 118

 Score = 55.3 bits (133), Expect = 1e-09
 Identities = 20/79 (25%), Positives = 37/79 (46%)

Query: 358 GYEQVLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGED 417
                 G+ GV    +  GR++GEA V    ++   +ALK+ +  +  RYIEV K++  +
Sbjct: 40  DCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVFKSHRTE 99

Query: 418 FINVAGGNNNEAQAFLTRG 436
              V   +   + +  + G
Sbjct: 100 MDWVLKHSGPNSASGPSSG 118

>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 102

 Score =  120 bits (303), Expect = 8e-33
 Identities = 34/106 (32%), Positives = 51/106 (48%), Gaps = 10/106 (9%)

Query: 423 GGNNNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP 482
           G + +   +F +     +  MRGLPY  T   + +FF        N M     V     P
Sbjct: 1   GSSGSSGSSFQSTTGHCV-HMRGLPYRATENDIYNFFS-----PLNPMR----VHIEIGP 50

Query: 483 DGKATGDAFVLFEKEEEADKALSKHKESIGIRYIELFRSTTAEVQQ 528
           DG+ TG+A V F   E+A  A++K K ++  RY+ELF ++TA    
Sbjct: 51  DGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNSTAGTSG 96

>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 102

 Score = 61.6 bits (150), Expect = 5e-12
 Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 9/75 (12%)

Query: 63  EHILEFLGEFASNIVYQGVHMVYNSQGQPSGEAFIQMDSEHSAYLAAQLRHNRNMIFGKK 122
             I  F      N +   VH+     G+ +GEA ++  +   A +AA  +   NM    +
Sbjct: 30  NDIYNFFSPL--NPM--RVHIEIGPDGRVTGEADVEFATHEDA-VAAMAKDKANM----Q 80

Query: 123 QRYIEVFQCSGEDMN 137
            RY+E+F  S    +
Sbjct: 81  HRYVELFLNSTAGTS 95

>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 102

 Score = 52.8 bits (127), Expect = 7e-09
 Identities = 15/55 (27%), Positives = 24/55 (43%)

Query: 363 LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGED 417
           L    V + +   GR  GEA V F   E    A+ + K ++  RY+E+   +   
Sbjct: 39  LNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNSTAG 93

>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens} Length = 107

 Score =  118 bits (297), Expect = 5e-32
 Identities = 33/94 (35%), Positives = 54/94 (57%), Gaps = 5/94 (5%)

Query: 440 IIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEE 499
           +IR +GLP+ CT + V++FF       C + +GE G+ F+   DGK  GDA +  E E++
Sbjct: 13  LIRAQGLPWSCTMEDVLNFFS-----DCRIRNGENGIHFLLNRDGKRRGDALIEMESEQD 67

Query: 500 ADKALSKHKESIGIRYIELFRSTTAEVQQVLNKT 533
             KAL KH+  +G RY+E++     +V  ++   
Sbjct: 68  VQKALEKHRMYMGQRYVEVYEINNEDVDALMKSL 101

>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens} Length = 107

 Score = 74.5 bits (183), Expect = 2e-16
 Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 5/87 (5%)

Query: 63  EHILEFLGEFASNIVYQGVHMVYNSQGQPSGEAFIQMDSEHSAYLAAQLRHNRNMIFGKK 122
           E +L F  +        G+H + N  G+  G+A I+M+SE     A + +H   M     
Sbjct: 26  EDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYM----G 80

Query: 123 QRYIEVFQCSGEDMNLVLNGVLPPTSP 149
           QRY+EV++ + ED++ ++  +   +SP
Sbjct: 81  QRYVEVYEINNEDVDALMKSLQVKSSP 107

>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens} Length = 107

 Score = 59.9 bits (145), Expect = 2e-11
 Identities = 17/61 (27%), Positives = 33/61 (54%)

Query: 358 GYEQVLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGED 417
                 G  G+   L+  G+R G+A++    ++    AL++H+ ++ +RY+EV + N ED
Sbjct: 34  DCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINNED 93

Query: 418 F 418
            
Sbjct: 94  V 94

>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 104

 Score =  113 bits (285), Expect = 2e-30
 Identities = 37/105 (35%), Positives = 60/105 (57%), Gaps = 7/105 (6%)

Query: 424 GNNNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPD 483
           G++  +           +R+RGLP+ C+ ++++ FF         ++    G+       
Sbjct: 1   GSSGSSGNSPDTANDGFVRLRGLPFGCSKEEIVQFFS-----GLEIV--PNGMTLPVDFQ 53

Query: 484 GKATGDAFVLFEKEEEADKALSKHKESIGIRYIELFRSTTAEVQQ 528
           G++TG+AFV F  +E A+KAL KHKE IG RYIE+F+S+ AEV+ 
Sbjct: 54  GRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEVRT 98

>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 104

 Score = 67.5 bits (165), Expect = 4e-14
 Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 7/75 (9%)

Query: 63  EHILEFLGEFASNIVYQGVHMVYNSQGQPSGEAFIQMDSEHSAYLAAQLRHNRNMIFGKK 122
           E I++F       IV  G+ +  + QG+ +GEAF+Q  S+  A  A + +H   +     
Sbjct: 30  EEIVQFFSGL--EIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALK-KHKERI----G 82

Query: 123 QRYIEVFQCSGEDMN 137
            RYIE+F+ S  ++ 
Sbjct: 83  HRYIEIFKSSRAEVR 97

>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 104

 Score = 60.9 bits (148), Expect = 8e-12
 Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 1/61 (1%)

Query: 366 GGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGEDFINVAGGN 425
            G+ L +   GR  GEA V+F  QE  + ALK+HK  I  RYIE+ K++  + +  +G +
Sbjct: 44  NGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE-VRTSGPS 102

Query: 426 N 426
           +
Sbjct: 103 S 103

>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 91

 Score =  107 bits (270), Expect = 2e-28
 Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 9/86 (10%)

Query: 440 IIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEE 499
            +++RG P+  T K V++F           +     +  V+   G  TG  FV F  EEE
Sbjct: 12  TVKLRGAPFNVTEKNVMEFLA-----PLKPVA----IRIVRNAHGNKTGYIFVDFSNEEE 62

Query: 500 ADKALSKHKESIGIRYIELFRSTTAE 525
             +AL  ++E +G RYIE+FR  +  
Sbjct: 63  VKQALKCNREYMGGRYIEVFREKSGP 88

>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 91

 Score = 59.2 bits (144), Expect = 3e-11
 Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 9/70 (12%)

Query: 63  EHILEFLGEFASNIVYQGVHMVYNSQGQPSGEAFIQMDSEHSAYLAAQLRHNRNMIFGKK 122
           ++++EFL       V   + +V N+ G  +G  F+   +E      A   +   M     
Sbjct: 25  KNVMEFLAPL--KPV--AIRIVRNAHGNKTGYIFVDFSNEEEV-KQALKCNREYM----G 75

Query: 123 QRYIEVFQCS 132
            RYIEVF+  
Sbjct: 76  GRYIEVFREK 85

>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 91

 Score = 52.7 bits (127), Expect = 4e-09
 Identities = 15/52 (28%), Positives = 26/52 (50%)

Query: 363 LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKAN 414
           L    + +  +A G + G   V F ++E    ALK ++ ++  RYIEV +  
Sbjct: 34  LKPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFREK 85

>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 124

 Score =  108 bits (271), Expect = 3e-28
 Identities = 30/98 (30%), Positives = 53/98 (54%), Gaps = 7/98 (7%)

Query: 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEK 496
           A   + ++GLP+E   K VIDFF+       +++  E+ +     P+GKATG+ FV F  
Sbjct: 24  AGFCVYLKGLPFEAENKHVIDFFK-----KLDIV--EDSIYIAYGPNGKATGEGFVEFRN 76

Query: 497 EEEADKALSKHKESIGIRYIELFRSTTAEVQQVLNKTM 534
           E +   AL +HK+ +G R+I++   T   + + ++   
Sbjct: 77  EADYKAALCRHKQYMGNRFIQVHPITKKGMLEKIDMIR 114

>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 124

 Score = 64.5 bits (157), Expect = 9e-13
 Identities = 16/74 (21%), Positives = 37/74 (50%), Gaps = 7/74 (9%)

Query: 63  EHILEFLGEFASNIVYQGVHMVYNSQGQPSGEAFIQMDSEHSAYLAAQLRHNRNMIFGKK 122
           +H+++F  +   +IV   +++ Y   G+ +GE F++  +E     A  L  ++  +    
Sbjct: 40  KHVIDFFKKL--DIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAA--LCRHKQYMGN-- 93

Query: 123 QRYIEVFQCSGEDM 136
            R+I+V   + + M
Sbjct: 94  -RFIQVHPITKKGM 106

>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 124

 Score = 64.5 bits (157), Expect = 9e-13
 Identities = 15/71 (21%), Positives = 28/71 (39%)

Query: 366 GGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGEDFINVAGGN 425
             + +     G+  GE  V F ++     AL RHK ++  R+I+V     +  +      
Sbjct: 54  DSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKKGMLEKIDMI 113

Query: 426 NNEAQAFLTRG 436
               Q+  + G
Sbjct: 114 RKRLQSGPSSG 124

>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 114

 Score =  107 bits (269), Expect = 5e-28
 Identities = 22/111 (19%), Positives = 46/111 (41%), Gaps = 7/111 (6%)

Query: 424 GNNNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPD 483
           G++  +       A+V   +  +P+  T   V+ F E        V   E  V  +   +
Sbjct: 1   GSSGSSGEGDVNSAKVCAHITNIPFSITKMDVLQFLE-----GIPVD--ENAVHVLVDNN 53

Query: 484 GKATGDAFVLFEKEEEADKALSKHKESIGIRYIELFRSTTAEVQQVLNKTM 534
           G+  G A V F+ E++A K+   H++ +  R   +   T  +++++     
Sbjct: 54  GQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHVVTLEDMREIEKNPP 104

>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 114

 Score = 64.0 bits (156), Expect = 1e-12
 Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 7/74 (9%)

Query: 63  EHILEFLGEFASNIVYQGVHMVYNSQGQPSGEAFIQMDSEHSAYLAAQLRHNRNMIFGKK 122
             +L+FL      +    VH++ ++ GQ  G+A +Q  +E  A  +   R +R  + G  
Sbjct: 30  MDVLQFLEGI--PVDENAVHVLVDNNGQGLGQALVQFKNEDDARKS--ERLHRKKLNG-- 83

Query: 123 QRYIEVFQCSGEDM 136
            R   V   + EDM
Sbjct: 84  -REAFVHVVTLEDM 96

>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 114

 Score = 53.2 bits (128), Expect = 5e-09
 Identities = 11/52 (21%), Positives = 25/52 (48%)

Query: 366 GGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGED 417
             V + +   G+  G+A+V+F +++    + + H+  ++ R   V     ED
Sbjct: 44  NAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHVVTLED 95

>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 109

 Score =  102 bits (257), Expect = 2e-26
 Identities = 21/116 (18%), Positives = 44/116 (37%), Gaps = 9/116 (7%)

Query: 423 GGNNNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP 482
           G + +  +        + + + G+P+      V DFF         V    + V  +K  
Sbjct: 1   GSSGSSGKPLPINPDDLYVSVHGMPFSAMENDVRDFFH-----GLRV----DAVHLLKDH 51

Query: 483 DGKATGDAFVLFEKEEEADKALSKHKESIGIRYIELFRSTTAEVQQVLNKTMELPK 538
            G+  G+  V F   ++  +AL +++  +  RY+E+  +T  +           P 
Sbjct: 52  VGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPATERQWVAAGGHITSGPS 107

>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 109

 Score = 70.9 bits (174), Expect = 3e-15
 Identities = 19/67 (28%), Positives = 33/67 (49%)

Query: 363 LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGEDFINVA 422
           L +  V L     GR NG  +V+F+  +    ALKR++  + +RY+EV+ A    ++   
Sbjct: 40  LRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPATERQWVAAG 99

Query: 423 GGNNNEA 429
           G   +  
Sbjct: 100 GHITSGP 106

>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 109

 Score = 60.9 bits (148), Expect = 9e-12
 Identities = 16/87 (18%), Positives = 33/87 (37%), Gaps = 10/87 (11%)

Query: 63  EHILEFLGEFASNIVYQGVHMVYNSQGQPSGEAFIQMDSEHSAYLAAQLRHNRNMIFGKK 122
             + +F       +    VH++ +  G+ +G   ++  S    + A + R+   M     
Sbjct: 31  NDVRDFFHGL--RVD--AVHLLKDHVGRNNGNGLVKFLSPQDTFEALK-RNRMLM----I 81

Query: 123 QRYIEVFQCSGEDMNLVLNGVLP-PTS 148
           QRY+EV   +          +   P+S
Sbjct: 82  QRYVEVSPATERQWVAAGGHITSGPSS 108

>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1 Length = 98

 Score = 97.4 bits (243), Expect = 1e-24
 Identities = 24/103 (23%), Positives = 45/103 (43%), Gaps = 8/103 (7%)

Query: 424 GNNNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPD 483
           G++  + A   +    II+++ +P+  +  +++DFF         V+     V       
Sbjct: 1   GSSGSSGASSGKPGPTIIKVQNMPFTVSIDEILDFFY-----GYQVI--PGSVCLKYNEK 53

Query: 484 GKATGDAFVLFEKEEEADKALSK-HKESIGIRYIELFRSTTAE 525
           G  TG+A V FE  +EA  A+   +   IG R ++L   +   
Sbjct: 54  GMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGSGPS 96

>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1 Length = 98

 Score = 68.5 bits (168), Expect = 2e-14
 Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 6/72 (8%)

Query: 63  EHILEFLGEFASNIVYQGVHMVYNSQGQPSGEAFIQMDSEHSAYLAAQLRHNRNMIFGKK 122
           + IL+F   +   ++   V + YN +G P+GEA +  +S   A  A    ++R +     
Sbjct: 30  DEILDFFYGY--QVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPI----G 83

Query: 123 QRYIEVFQCSGE 134
            R +++   SG 
Sbjct: 84  SRKVKLVLGSGP 95

>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1 Length = 98

 Score = 49.2 bits (118), Expect = 9e-08
 Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 366 GGVALCLSAFGRRNGEAIVRFIDQEHRDMAL-KRHKHHIDKRYIEVTKANGE 416
           G V L  +  G   GEA+V F  ++    A+   +   I  R +++   +G 
Sbjct: 44  GSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGSGP 95

>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A Length = 95

 Score = 93.5 bits (233), Expect = 2e-23
 Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 8/85 (9%)

Query: 440 IIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEE 499
           +I+++ +P+  +  +++DFF         V+     V       G  TG+A V FE  +E
Sbjct: 17  VIKVQNMPFTVSIDEILDFFY-----GYQVI--PGSVCLKYNEKGMPTGEAMVAFESRDE 69

Query: 500 ADKALSK-HKESIGIRYIELFRSTT 523
           A  A+   +   IG R ++L   ++
Sbjct: 70  ATAAVIDLNDRPIGSRKVKLSGPSS 94

>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A Length = 95

 Score = 69.3 bits (170), Expect = 9e-15
 Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 6/70 (8%)

Query: 63  EHILEFLGEFASNIVYQGVHMVYNSQGQPSGEAFIQMDSEHSAYLAAQLRHNRNMIFGKK 122
           + IL+F   +   ++   V + YN +G P+GEA +  +S   A  A    ++R +     
Sbjct: 30  DEILDFFYGY--QVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPI----G 83

Query: 123 QRYIEVFQCS 132
            R +++   S
Sbjct: 84  SRKVKLSGPS 93

>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A Length = 95

 Score = 48.5 bits (116), Expect = 2e-07
 Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 366 GGVALCLSAFGRRNGEAIVRFIDQEHRDMAL-KRHKHHIDKRYIEVTKAN 414
           G V L  +  G   GEA+V F  ++    A+   +   I  R ++++  +
Sbjct: 44  GSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93

>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A Length = 196

 Score = 59.6 bits (145), Expect = 2e-10
 Identities = 29/154 (18%), Positives = 55/154 (35%), Gaps = 19/154 (12%)

Query: 376 GRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGEDFINVAGGNNNEAQAFLTR 435
            R  G   V +   E  D A+    H +D R +E  +A   +     G +    + F+  
Sbjct: 52  KRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFV-- 109

Query: 436 GAQVIIRMRGLPYECTAKQVIDFFEA-GTENSCNVMDGEEGVLFVKKPDGKATGDAFVLF 494
                    G+  +     + D+FE  G      +M          +  GK  G AFV F
Sbjct: 110 --------GGIKEDTEEHHLRDYFEQYGKIEVIEIM--------TDRGSGKKRGFAFVTF 153

Query: 495 EKEEEADKALSKHKESIGIRYIELFRSTTAEVQQ 528
           +  +  DK + +   ++     E+ ++ + +   
Sbjct: 154 DDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMA 187

>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A Length = 196

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 9/85 (10%)

Query: 445 GLPYECTAKQVIDFFE-AGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKA 503
           GL +E T + +   FE  GT   C VM              ++ G  FV +   EE D A
Sbjct: 20  GLSFETTDESLRSHFEQWGTLTDCVVM--------RDPNTKRSRGFGFVTYATVEEVDAA 71

Query: 504 LSKHKESIGIRYIELFRSTTAEVQQ 528
           ++     +  R +E  R+ + E  Q
Sbjct: 72  MNARPHKVDGRVVEPKRAVSREDSQ 96

>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 103

 Score = 52.4 bits (126), Expect = 1e-08
 Identities = 12/77 (15%), Positives = 27/77 (35%), Gaps = 10/77 (12%)

Query: 443 MRGLPYECTAKQVIDFFEA-GTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEAD 501
           ++G P + T   + ++ E  G   +  +          +       G  FV+F+  E A 
Sbjct: 16  IKGFPTDATLDDIKEWLEDKGQVLNIQMR---------RTLHKAFKGSIFVVFDSIESAK 66

Query: 502 KALSKHKESIGIRYIEL 518
           K +    +      + +
Sbjct: 67  KFVETPGQKYKETDLLI 83

>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C Length = 167

 Score = 50.6 bits (122), Expect = 1e-07
 Identities = 30/148 (20%), Positives = 54/148 (36%), Gaps = 26/148 (17%)

Query: 376 GRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGEDFINVAGGNNNEAQAFLTR 435
           GR  G   + F      D  +K  +H +D + I+  +A   D        +   + F+  
Sbjct: 42  GRSRGFGFLSFEKPSSVDEVVKT-QHILDGKVIDPKRAIPRD------EQDKTGKIFV-- 92

Query: 436 GAQVIIRMRGLPYECTAKQVIDFFEA-GTENSCNVMDGEEGVLFVKKPDGKATGDAFVLF 494
           G        G+  +   K+  +FF   GT     +M        + K  G++ G  FV +
Sbjct: 93  G--------GIGPDVRPKEFEEFFSQWGTIIDAQLM--------LDKDTGQSRGFGFVTY 136

Query: 495 EKEEEADKALSKHKESIGIRYIELFRST 522
           +  +  D+           R IE+ R+ 
Sbjct: 137 DSADAVDRVCQNKFIDFKDRKIEIKRAE 164

>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C Length = 167

 Score = 41.0 bits (97), Expect = 3e-04
 Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 12/67 (17%)

Query: 445 GLPYECTAKQVIDFFE-AGTENSCNVM-DGEEGVLFVKKPDGKATGDAFVLFEKEEEADK 502
           GL ++ T   + ++F   GT     +M D            G++ G  F+ FEK    D+
Sbjct: 10  GLNWDTTEDNLREYFGKYGTVTDLKIMKD---------PATGRSRGFGFLSFEKPSSVDE 60

Query: 503 ALSK-HK 508
            +   H 
Sbjct: 61  VVKTQHI 67

>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A Length = 175

 Score = 49.5 bits (119), Expect = 4e-07
 Identities = 26/132 (19%), Positives = 47/132 (35%), Gaps = 28/132 (21%)

Query: 376 GRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGEDFINVAGGNNNEAQAFLTR 435
           G       V F   E  + AL+     +    I++ K  G D   V              
Sbjct: 51  GTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGRDSKKVRAART--------- 101

Query: 436 GAQVIIRMRGLPYECTAKQVIDFFEA-GTENSCNVMDGEEGVLFVKKPDGKATGDAFVLF 494
              ++ +   L +  T  ++ + FE                +  V + DGK+ G A++ F
Sbjct: 102 ---LLAK--NLSFNITEDELKEVFEDALE------------IRLVSQ-DGKSKGIAYIEF 143

Query: 495 EKEEEADKALSK 506
           + E +A+K L +
Sbjct: 144 KSEADAEKNLEE 155

>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A Length = 175

 Score = 46.4 bits (111), Expect = 4e-06
 Identities = 13/74 (17%), Positives = 22/74 (29%), Gaps = 10/74 (13%)

Query: 444 RGLPYECTAKQVIDFFE-AGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADK 502
             L    +  ++         +N   V+D            G      +V FE  E+ +K
Sbjct: 19  GNLNPNKSVAELKVAISELFAKNDLAVVD---------VRTGTNRKFGYVDFESAEDLEK 69

Query: 503 ALSKHKESIGIRYI 516
           AL      +    I
Sbjct: 70  ALELTGLKVFGNEI 83

>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A Length = 292

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 27/147 (18%), Positives = 57/147 (38%), Gaps = 19/147 (12%)

Query: 375 FGRRNGEAIVRFIDQEHRDMALKR-HKHHIDKRYIEVTKANGEDFINVAGGNNNEAQAFL 433
           F      A +    +E     +++ +   I+   +    +N  +          E     
Sbjct: 155 FNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLEKSKRTDSATLE----- 209

Query: 434 TRGAQVIIRMRGLPYECTAKQVI-DFFEA-GTENSCNVMDGEEGVLFVKKPDGKATGDAF 491
             G +++IR   L  E   + ++ + FE  G+    N+  G       +K        AF
Sbjct: 210 --GREIMIR--NLSTELLDENLLRESFEGFGSIEKINIPAG-------QKEHSFNNCCAF 258

Query: 492 VLFEKEEEADKALSKHKESIGIRYIEL 518
           ++FE ++ A++AL  ++  +G R I +
Sbjct: 259 MVFENKDSAERALQMNRSLLGNREISV 285

>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A Length = 292

 Score = 48.1 bits (115), Expect = 4e-06
 Identities = 15/82 (18%), Positives = 27/82 (32%), Gaps = 13/82 (15%)

Query: 445 GLPYECTAKQVIDFFE-AGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKA 503
            LP      +V  +F+  G     +V D             K    A + F + + A  A
Sbjct: 48  NLPKSYNQNKVYKYFKHCGPIIHVDVADSL----------KKNFRFARIEFARYDGALAA 97

Query: 504 LSKHKESIGIR--YIELFRSTT 523
           ++K  + +G     +      T
Sbjct: 98  ITKTHKVVGQNEIIVSHLTECT 119

>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A Length = 292

 Score = 40.7 bits (96), Expect = 8e-04
 Identities = 13/128 (10%), Positives = 33/128 (25%), Gaps = 32/128 (25%)

Query: 380 GEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGEDFINVAGGNNNEAQAFLTRGAQV 439
             A + F   +    A+ +    + +  I V+         +          ++T     
Sbjct: 82  RFARIEFARYDGALAAITKTHKVVGQNEIIVSHL---TECTL----------WMT----- 123

Query: 440 IIRMRGLPYECTAKQVIDFFE-AGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEE 498
                  P   T + + D  +                +         +   A++    +E
Sbjct: 124 -----NFPPSYTQRNIRDLLQDINVVALS--------IRLPSLRFNTSRRFAYIDVTSKE 170

Query: 499 EADKALSK 506
           +A   + K
Sbjct: 171 DARYCVEK 178

>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A Length = 172

 Score = 47.2 bits (113), Expect = 2e-06
 Identities = 21/150 (14%), Positives = 53/150 (35%), Gaps = 28/150 (18%)

Query: 376 GRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGEDFINVAGGNNNEAQAFLTR 435
            +    A + F   +    A+         + +++ + +  D+  + G +          
Sbjct: 48  NQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPH--DYQPLPGAHK--------- 96

Query: 436 GAQVIIRMRGLPYECTAKQVIDFFEA-GTENSCNVM-DGEEGVLFVKKPDGKATGDAFVL 493
                + + GLP      QV +   + G   + N++ D            G + G AF  
Sbjct: 97  -----LFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSA---------TGLSKGYAFCE 142

Query: 494 FEKEEEADKALSK-HKESIGIRYIELFRST 522
           +      D+A++  +   +G + + + R++
Sbjct: 143 YVDINVTDQAIAGLNGMQLGDKKLLVQRAS 172

>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 113

 Score = 45.5 bits (108), Expect = 3e-06
 Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 1/62 (1%)

Query: 445 GLPYECTAKQVIDFF-EAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKA 503
           GL    T   + DFF + G              +++ K  GK  GDA V +E    A  A
Sbjct: 22  GLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAA 81

Query: 504 LS 505
           + 
Sbjct: 82  VE 83

>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A Length = 175

 Score = 46.8 bits (112), Expect = 3e-06
 Identities = 24/128 (18%), Positives = 42/128 (32%), Gaps = 29/128 (22%)

Query: 384 VRFIDQEHRDMALKR-HKHHIDK---RYIEVTKANGEDFINVAGGNNNEAQAFLTRGAQV 439
           V F  ++    A    H   +       I++  A+ E             +       ++
Sbjct: 52  VTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSE-------------KNNAVEDRKL 98

Query: 440 IIRMRGLPYECTAKQVIDFFEA-GTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEE 498
            I M  +  +CT   +   F + G    C ++         + PDG + G AFV F    
Sbjct: 99  FIGM--ISKKCTENDIRVMFSSFGQIEECRIL---------RGPDGLSRGCAFVTFTTRA 147

Query: 499 EADKALSK 506
            A  A+  
Sbjct: 148 MAQTAIKA 155

>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A Length = 105

 Score = 45.0 bits (107), Expect = 4e-06
 Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 10/64 (15%)

Query: 444 RGLPYECTAKQVIDFFEA-GTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADK 502
             L  + + + V+  F+  G  + C V+         + PDG + G AFV F    EA  
Sbjct: 21  GMLNKQQSEEDVLRLFQPFGVIDECTVL---------RGPDGSSKGCAFVKFSSHTEAQA 71

Query: 503 ALSK 506
           A+  
Sbjct: 72  AIHA 75

>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A Length = 198

 Score = 46.9 bits (112), Expect = 4e-06
 Identities = 20/153 (13%), Positives = 50/153 (32%), Gaps = 16/153 (10%)

Query: 382 AIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGEDFINVAGGNNNEAQAFLTRGAQVII 441
           A + F   +    A+         + +++ + +    +     N +     +        
Sbjct: 54  AFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDS 113

Query: 442 RMR----GLPYECTAKQVIDFFEA-GTENSCNVM-DGEEGVLFVKKPDGKATGDAFVLFE 495
             +    GLP      QV +   + G   + N++ D            G + G AF  + 
Sbjct: 114 AHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSA---------TGLSKGYAFCEYV 164

Query: 496 KEEEADKALSK-HKESIGIRYIELFRSTTAEVQ 527
                D+A++  +   +G + + + R++     
Sbjct: 165 DINVTDQAIAGLNGMQLGDKKLLVQRASVGAKN 197

>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A Length = 92

 Score = 43.7 bits (104), Expect = 7e-06
 Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 11/63 (17%)

Query: 445 GLPYECTAKQVIDFF-EAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKA 503
            LP++ T K + D F E G     ++             +GK+ G   V FE  E A++A
Sbjct: 15  NLPFDFTWKMLKDKFNECGHVLYADIK----------MENGKSKGCGVVKFESPEVAERA 64

Query: 504 LSK 506
              
Sbjct: 65  CRM 67

>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A Length = 216

 Score = 46.5 bits (111), Expect = 8e-06
 Identities = 30/157 (19%), Positives = 61/157 (38%), Gaps = 28/157 (17%)

Query: 376 GRRNGEAIVRFIDQEHRDMALKR-HKHHIDKRYIEVTKANGEDFINVAGGNNNEAQAFLT 434
            +  G A V +   E   +AL++ +   +  R I+V + +          N  +AQ  + 
Sbjct: 67  MKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS----------NIGQAQPIID 116

Query: 435 RGAQVIIRMR-----GLPYECTAKQVIDFFEA-GTENSCNVM-DGEEGVLFVKKPDGKAT 487
           + A+            +  + +   +   FEA G   S  +  D            GK  
Sbjct: 117 QLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPT---------TGKHK 167

Query: 488 GDAFVLFEKEEEADKALSK-HKESIGIRYIELFRSTT 523
           G  F+ +EK + +  A+S  +   +G +Y+ + ++ T
Sbjct: 168 GYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVT 204

>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens} Length = 99

 Score = 43.4 bits (103), Expect = 1e-05
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 1/62 (1%)

Query: 445 GLPYECTAKQVIDFF-EAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKA 503
           GL    T + V D+F + G   +          L+  +  GK  G+A V F+    A  A
Sbjct: 20  GLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAA 79

Query: 504 LS 505
           + 
Sbjct: 80  ID 81

>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus} Length = 177

 Score = 45.2 bits (107), Expect = 1e-05
 Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 10/67 (14%)

Query: 441 IRMRGLPYECTAKQVIDFF-EAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEE 499
           + +  L +  +   + + F E GT     V              G++ G A V FE+  +
Sbjct: 91  LLVSNLDFGVSDADIQELFAEFGTLKKAAVD---------YDRSGRSLGTADVHFERRAD 141

Query: 500 ADKALSK 506
           A KA+ +
Sbjct: 142 ALKAMKQ 148

>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens} Length = 100

 Score = 43.4 bits (103), Expect = 1e-05
 Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 9/72 (12%)

Query: 446 LPYECTAKQVIDFFEAGTENSCN-VMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKAL 504
           LPY+ T + + +FF     ++     +             +  G  +  FE  +    AL
Sbjct: 27  LPYDVTEESIKEFFRGLNISAVRLPREPSNP--------ERLKGFGYAEFEDLDSLLSAL 78

Query: 505 SKHKESIGIRYI 516
           S ++ES+G R I
Sbjct: 79  SLNEESLGNRRI 90

>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1 Length = 101

 Score = 43.0 bits (102), Expect = 1e-05
 Identities = 15/79 (18%), Positives = 26/79 (32%), Gaps = 10/79 (12%)

Query: 445 GLPYECTAKQVIDFF-EAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKA 503
            L    +  ++     E   +N   V+D            G      +V FE  E+ +KA
Sbjct: 24  NLNPNKSVAELKVAISELFAKNDLAVVD---------VRTGTNRKFGYVDFESAEDLEKA 74

Query: 504 LSKHKESIGIRYIELFRST 522
           L      +    I+L +  
Sbjct: 75  LELTGLKVFGNEIKLEKPK 93

>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B Length = 261

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 22/125 (17%), Positives = 39/125 (31%), Gaps = 33/125 (26%)

Query: 384 VRFIDQEHRDMALKR-HKHHIDKRYIEVTKANGEDFINVAGGNNNEAQAFLTRGAQVIIR 442
           +R   +   ++A        +  R + +  A                    T GA + ++
Sbjct: 63  IRLESRTLAEIAKAELDGTILKSRPLRIRFA--------------------THGAALTVK 102

Query: 443 MRGLPYECTAKQVIDFFEA-GTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEAD 501
              L    + + +   F   G      V+             G+ATG  FV F  +  A 
Sbjct: 103 --NLSPVVSNELLEQAFSQFGPVEKAVVV---------VDDRGRATGKGFVEFAAKPPAR 151

Query: 502 KALSK 506
           KAL +
Sbjct: 152 KALER 156

>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 104

 Score = 43.0 bits (102), Expect = 2e-05
 Identities = 16/78 (20%), Positives = 29/78 (37%), Gaps = 9/78 (11%)

Query: 440 IIRMRGLPYECTAKQVIDFF-EAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEE 498
              +  LPY+ T + + +FF            +             +  G  +  FE  +
Sbjct: 17  TAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNP--------ERLKGFGYAEFEDLD 68

Query: 499 EADKALSKHKESIGIRYI 516
               ALS ++ES+G + I
Sbjct: 69  SLLSALSLNEESLGNKRI 86

>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A Length = 102

 Score = 43.0 bits (102), Expect = 2e-05
 Identities = 10/66 (15%), Positives = 20/66 (30%), Gaps = 10/66 (15%)

Query: 445 GLPYECTAKQVIDFFEA-GTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKA 503
           G+       ++  FF   G+     ++             G + G  FV F  + +  K 
Sbjct: 16  GIDVRMDETEIRSFFARYGSVKEVKII---------TDRTGVSKGYGFVSFYNDVDVQKI 66

Query: 504 LSKHKE 509
           +     
Sbjct: 67  VESQIN 72

>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 114

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 10/62 (16%)

Query: 446 LPYECTAKQVIDFF-EAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKAL 504
           L Y+   K++ + F  AG     +++         +  DGK+ G   V FE+  EA +A+
Sbjct: 23  LDYKVGWKKLKEVFSMAGVVVRADIL---------EDKDGKSRGIGTVTFEQSIEAVQAI 73

Query: 505 SK 506
           S 
Sbjct: 74  SM 75

>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A Length = 111

 Score = 43.3 bits (102), Expect = 2e-05
 Identities = 15/67 (22%), Positives = 22/67 (32%), Gaps = 12/67 (17%)

Query: 441 IRMRGLPYECTAKQVIDFF-EAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEE 499
           I M+ LP  C+ + + D   E   E             F         G   + F  EE 
Sbjct: 31  ITMKNLPEGCSWQDLKDLARENSLE-----------TTFSSVNTRDFDGTGALEFPSEEI 79

Query: 500 ADKALSK 506
             +AL +
Sbjct: 80  LVEALER 86

>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1 Length = 107

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 12/64 (18%)

Query: 444 RGLPYECTAKQVIDFFEA-GTENSCNVMDGEEGVLFVKKPD--GKATGDAFVLFEKEEEA 500
           R +P++   +++ + F   G   +  +          KK    G   G  FV F  +++A
Sbjct: 21  RNIPFQANQREIRELFSTFGELKTVRLP---------KKMTGTGAHRGFGFVDFITKQDA 71

Query: 501 DKAL 504
            KA 
Sbjct: 72  KKAF 75

>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 42.6 bits (101), Expect = 2e-05
 Identities = 16/75 (21%), Positives = 33/75 (44%), Gaps = 11/75 (14%)

Query: 445 GLPYECTAKQVIDFFEA-GTENSCNVM-DGEEGVLFVKKPDGKATGDAFVLFEKEEEADK 502
           G+P+ C   ++ ++F+  G      ++ D             +  G  F+ FE E+  D+
Sbjct: 17  GIPHNCGETELREYFKKFGVVTEVVMIYD---------AEKQRPRGFGFITFEDEQSVDQ 67

Query: 503 ALSKHKESIGIRYIE 517
           A++ H   I  + +E
Sbjct: 68  AVNMHFHDIMGKKVE 82

>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 104

 Score = 42.6 bits (100), Expect = 2e-05
 Identities = 21/110 (19%), Positives = 41/110 (37%), Gaps = 12/110 (10%)

Query: 436 GAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFE 495
              V + +RGLP     + +  +FE    N      G   VL  ++          + F 
Sbjct: 6   SGGVAVEVRGLPPAVPDELLTLYFE----NRRRSGGGP--VLSWQRLGCGG----VLTFR 55

Query: 496 KEEEADKALSKHKESIGIRYIELFRSTTAEVQQVLNKTMELPKNNSLTSS 545
           +  +A++ L++    +    + L  +      ++L +   LP   S  SS
Sbjct: 56  EPADAERVLAQADHELHGAQLSLRPAPPRAPARLLLQ--GLPPGTSGPSS 103

>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A Length = 75

 Score = 41.7 bits (99), Expect = 3e-05
 Identities = 16/75 (21%), Positives = 30/75 (40%), Gaps = 11/75 (14%)

Query: 445 GLPYECTAKQVIDFFEA-GTENSCNVM-DGEEGVLFVKKPDGKATGDAFVLFEKEEEADK 502
           GL  +   +++ ++F   G   S  +  D             K  G  F+ F++EE   K
Sbjct: 6   GLSPDTPEEKIREYFGGFGEVESIELPMD---------NKTNKRRGFCFITFKEEEPVKK 56

Query: 503 ALSKHKESIGIRYIE 517
            + K   ++G+   E
Sbjct: 57  IMEKKYHNVGLSKCE 71

>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 114

 Score = 42.7 bits (101), Expect = 3e-05
 Identities = 12/75 (16%), Positives = 24/75 (32%), Gaps = 11/75 (14%)

Query: 445 GLPYECTAKQVIDFF-EAGTENSCN-VMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADK 502
            L      + + DFF   G       + D         +   ++ G A+V F + +    
Sbjct: 32  QLAARIRPRDLEDFFSAVGKVRDVRIISD---------RNSRRSKGIAYVEFCEIQSVPL 82

Query: 503 ALSKHKESIGIRYIE 517
           A+    + +    I 
Sbjct: 83  AIGLTGQRLLGVPII 97

>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3h2u_B 3h2v_E Length = 284

 Score = 44.6 bits (106), Expect = 4e-05
 Identities = 20/157 (12%), Positives = 45/157 (28%), Gaps = 26/157 (16%)

Query: 376 GRRNGEAIVRFIDQEHRDMALKR-HKHHIDKRYIEVTKANGEDFINVAGGNNNEAQAFLT 434
           G+  G     ++ ++    A        +  R + V   +             +    L 
Sbjct: 134 GQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTD-----------AGQLTPALL 182

Query: 435 RGAQVIIRMRGLPYECT-AKQVIDFFEA-GTENSCNVMDGEEGVLFVKKPDGKATGDAFV 492
               + +    LP        +     A  +   C +             DG+  G A +
Sbjct: 183 HSRCLCVD--RLPPGFNDVDALCRALSAVHSPTFCQLA---------CGQDGQLKGFAVL 231

Query: 493 LFEKEEEADKALSK-HKESIGIRYIELFRSTTAEVQQ 528
            +E  E A++A  +    S+G  ++ +         +
Sbjct: 232 EYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGPPGR 268

>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3h2u_B 3h2v_E Length = 284

 Score = 44.6 bits (106), Expect = 5e-05
 Identities = 22/133 (16%), Positives = 45/133 (33%), Gaps = 32/133 (24%)

Query: 376 GRRNGEAIVRFIDQEHRDMALKR-HKHHIDKRYIEVTKANGEDFINVAGGNNNEAQAFLT 434
            +  G A V  ++ E  + A+   H+  + +R + V                        
Sbjct: 54  DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQ--------------------P 93

Query: 435 RGAQVIIRMRGLPYECTAKQVIDFFE-AGTENSCNVMDGEEGVLFVKKPDGKATGDAFVL 493
             A + +    LP   T +Q  +     G+   C ++          +  G++ G  F  
Sbjct: 94  TDALLCVA--NLPPSLTQQQFEELVRPFGSLERCFLV--------YSERTGQSKGYGFAE 143

Query: 494 FEKEEEADKALSK 506
           + K++ A +A S 
Sbjct: 144 YMKKDSAARAKSD 156

>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A Length = 193

 Score = 43.7 bits (102), Expect = 5e-05
 Identities = 12/79 (15%), Positives = 28/79 (35%), Gaps = 10/79 (12%)

Query: 441 IRMRGLPYECTAKQVIDFFEA-GTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEE 499
           + ++G P + T   + ++ E  G   +  +          +       G  FV+F+  E 
Sbjct: 112 VYIKGFPTDATLDDIKEWLEDKGQVLNIQMR---------RTLHKAFKGSIFVVFDSIES 162

Query: 500 ADKALSKHKESIGIRYIEL 518
           A K +    +      + +
Sbjct: 163 AKKFVETPGQKYKETDLLI 181

>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A Length = 75

 Score = 40.5 bits (96), Expect = 6e-05
 Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 11/75 (14%)

Query: 445 GLPYECTAKQVIDFFEA-GTENSCNVM-DGEEGVLFVKKPDGKATGDAFVLFEKEEEADK 502
           GL    T + V  +FE  G  +   +M D         K   +  G  FV FE E+  +K
Sbjct: 6   GLSVNTTVEDVKHYFEQFGKVDDAMLMFD---------KTTNRHRGFGFVTFESEDIVEK 56

Query: 503 ALSKHKESIGIRYIE 517
               H   I  + +E
Sbjct: 57  VCEIHFHEINNKMVE 71

>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens} Length = 116

 Score = 41.6 bits (98), Expect = 7e-05
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 1/62 (1%)

Query: 445 GLPYECTAKQVIDFF-EAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKA 503
           GL    T + V D+F + G   +          L+  +  GK  G+A V F+    A  A
Sbjct: 14  GLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAA 73

Query: 504 LS 505
           + 
Sbjct: 74  ID 75

>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 41.1 bits (97), Expect = 8e-05
 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 10/64 (15%)

Query: 444 RGLPYECTAKQVIDFF-EAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADK 502
            GLP+ CT +++ +     GT     +         V    GK  G A+V +E E +A +
Sbjct: 23  SGLPFSCTKEELEEICKAHGTVKDLRL---------VTNRAGKPKGLAYVEYENESQASQ 73

Query: 503 ALSK 506
           A+ K
Sbjct: 74  AVMK 77

>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1 Length = 111

 Score = 41.2 bits (97), Expect = 8e-05
 Identities = 15/64 (23%), Positives = 24/64 (37%), Gaps = 11/64 (17%)

Query: 444 RGLPYECTAKQVIDFFEA-GTENSCNVMDGEEGVLFVKKPD-GKATGDAFVLFEKEEEAD 501
           R L ++   + + +  +  G      V         V  PD   + G AF  F  +E A 
Sbjct: 21  RNLSFDSEEEALGEVLQQFGDLKYVRV---------VLHPDTEHSKGCAFAQFMTQEAAQ 71

Query: 502 KALS 505
           K L+
Sbjct: 72  KCLA 75

>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A Length = 107

 Score = 41.1 bits (97), Expect = 9e-05
 Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 10/67 (14%)

Query: 441 IRMRGLPYECTAKQVIDFF-EAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEE 499
           + +  L +  +   + + F E GT     V              G++ G A V FE++ +
Sbjct: 32  LLVSNLDFGVSDADIQELFAEFGTLKKAAVH---------YDRSGRSLGTADVHFERKAD 82

Query: 500 ADKALSK 506
           A KA+ +
Sbjct: 83  ALKAMKQ 89

>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 Length = 77

 Score = 40.2 bits (95), Expect = 1e-04
 Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 11/75 (14%)

Query: 445 GLPYECTAKQVIDFFEA-GTENSCNVMDGEEGVLFVKKPD-GKATGDAFVLFEKEEEADK 502
           GL ++ T + + ++F   G    C VM         + P   ++ G  FV F  +   DK
Sbjct: 7   GLSWQTTQEGLREYFGQFGEVKECLVM---------RDPLTKRSRGFGFVTFMDQAGVDK 57

Query: 503 ALSKHKESIGIRYIE 517
            L++ +  +  + I+
Sbjct: 58  VLAQSRHELDSKTID 72

>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1 Length = 108

 Score = 40.9 bits (96), Expect = 1e-04
 Identities = 16/84 (19%), Positives = 32/84 (38%), Gaps = 16/84 (19%)

Query: 424 GNNNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFF-EAGTENSCNVMDGEEGVLFVKKP 482
           G++  +    +R ++  + + GLP   + + + D   EAG     +V             
Sbjct: 1   GSSGSSGGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVY------------ 48

Query: 483 DGKATGDAFVLFEKEEEADKALSK 506
                G   V F ++E+   A+ K
Sbjct: 49  ---RDGTGVVEFVRKEDMTYAVRK 69

>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 11/67 (16%), Positives = 23/67 (34%), Gaps = 12/67 (17%)

Query: 441 IRMRGLPYECTAKQVIDFFE-AGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEE 499
           +++R +P     + +       G   SC  +                T    V +  +++
Sbjct: 18  LQIRNIPPHLQWEVLDSLLVQYGVVESCEQV-----------NTDSETAVVNVTYSSKDQ 66

Query: 500 ADKALSK 506
           A +AL K
Sbjct: 67  ARQALDK 73

>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus} Length = 124

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 10/67 (14%)

Query: 441 IRMRGLPYECTAKQVIDFF-EAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEE 499
           + +  L +  +   + + F E GT     V              G++ G A V FE+  +
Sbjct: 38  LLVSNLDFGVSDADIQELFAEFGTLKKAAVD---------YDRSGRSLGTADVHFERRAD 88

Query: 500 ADKALSK 506
           A KA+ +
Sbjct: 89  ALKAMKQ 95

>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A Length = 106

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 16/63 (25%), Positives = 23/63 (36%), Gaps = 11/63 (17%)

Query: 445 GLPYECTAKQVIDFFEA-GTENSCNVM-DGEEGVLFVKKPDGKATGDAFVLFEKEEEADK 502
            +P     K +   FE  G      V+ D         +  G   G AF+ + + E A K
Sbjct: 20  QIPRNLDEKDLKPLFEEFGKIYELTVLKD---------RFTGMHKGCAFLTYCERESALK 70

Query: 503 ALS 505
           A S
Sbjct: 71  AQS 73

>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A Length = 167

 Score = 41.0 bits (97), Expect = 3e-04
 Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 9/63 (14%)

Query: 445 GLPYECTAKQVIDFFEA-GTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKA 503
           GLP   T K++   F   G   +  ++        V +  G + G  F+ F+K  EA++A
Sbjct: 95  GLPKTMTQKELEQLFSQYGRIITSRIL--------VDQVTGVSRGVGFIRFDKRIEAEEA 146

Query: 504 LSK 506
           +  
Sbjct: 147 IKG 149

>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A Length = 87

 Score = 39.1 bits (92), Expect = 3e-04
 Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 11/75 (14%)

Query: 445 GLPYECTAKQVIDFFEA-GTENSCNVM-DGEEGVLFVKKPDGKATGDAFVLFEKEEEADK 502
           GL ++ + K + D+F   G    C +  D            G++ G  F+LF+     +K
Sbjct: 18  GLSWDTSKKDLKDYFTKFGEVVDCTIKMD---------PNTGRSRGFGFILFKDAASVEK 68

Query: 503 ALSKHKESIGIRYIE 517
            L + +  +  R I+
Sbjct: 69  VLDQKEHRLDGRVID 83

>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus} Length = 109

 Score = 39.6 bits (93), Expect = 3e-04
 Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 11/75 (14%)

Query: 445 GLPYECTAKQVIDFFEA-GTENSCNVMDGEEGVLFVKKPD-GKATGDAFVLFEKEEEADK 502
           GL ++ T + + ++F   G    C VM         + P   ++ G  FV F  +   DK
Sbjct: 32  GLSWQTTQEGLREYFGQFGEVKECLVM---------RDPLTKRSRGFGFVTFMDQAGVDK 82

Query: 503 ALSKHKESIGIRYIE 517
            L++ +  +  + I+
Sbjct: 83  VLAQSRHELDSKTID 97

>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A Length = 165

 Score = 40.6 bits (95), Expect = 3e-04
 Identities = 20/123 (16%), Positives = 41/123 (33%), Gaps = 15/123 (12%)

Query: 388 DQEHRDMALKRHKHHIDKRYIEVTKANGEDFINVAGG---NNNEAQAFLTRGAQ-VIIRM 443
           D +   + LK    H   R         E   +       +++E +    R  +  I+ +
Sbjct: 18  DGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFV 77

Query: 444 RGLPYECTAKQVIDFFEA-GTENSCNVM-DGEEGVLFVKKPDGKATGDAFVLFEKEEEAD 501
             +  E    ++ + F   G   + ++  D   G          + G A V +E  ++A 
Sbjct: 78  TSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTG---------FSKGYALVEYETHKQAL 128

Query: 502 KAL 504
            A 
Sbjct: 129 AAK 131

>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens} Length = 95

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 12/62 (19%), Positives = 21/62 (33%), Gaps = 10/62 (16%)

Query: 445 GLPYECTAKQVIDFF-EAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKA 503
            L      + + + F +AG      +          K  +GK     FV F+  E    A
Sbjct: 23  NLEARVREEILYELFLQAGPLTKVTIC---------KDREGKPKSFGFVCFKHPESVSYA 73

Query: 504 LS 505
           ++
Sbjct: 74  IA 75

>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A Length = 115

 Score = 39.8 bits (93), Expect = 3e-04
 Identities = 17/85 (20%), Positives = 30/85 (35%), Gaps = 16/85 (18%)

Query: 423 GGNNNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFF-EAGTENSCNVMDGEEGVLFVKK 481
           GG         +R ++  + + GLP   + + + D   EAG     +V            
Sbjct: 1   GGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVY----------- 49

Query: 482 PDGKATGDAFVLFEKEEEADKALSK 506
                 G   V F ++E+   A+ K
Sbjct: 50  ----RDGTGVVEFVRKEDMTYAVRK 70

>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 114

 Score = 39.6 bits (92), Expect = 3e-04
 Identities = 19/86 (22%), Positives = 30/86 (34%), Gaps = 8/86 (9%)

Query: 445 GLPYECTAKQVIDFFEA-GTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKA 503
           GLP +    ++   F   G          E       K      G AF+LF++E      
Sbjct: 15  GLPPDIDEDEITASFRRFGPLVVDWPHKAE------SKSYFPPKGYAFLLFQEESSVQAL 68

Query: 504 LSKHKESIGIRYIELFRSTTAEVQQV 529
           +    E  G  Y+ +  S T + + V
Sbjct: 69  IDACLEEDGKLYLCV-SSPTIKDKPV 93

>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 114

 Score = 39.5 bits (93), Expect = 4e-04
 Identities = 9/63 (14%), Positives = 21/63 (33%), Gaps = 10/63 (15%)

Query: 445 GLPYECTAKQVIDFFEA-GTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKA 503
            LP     +++ +  +  G   S  ++         +   G + G  F   E  E+ +  
Sbjct: 32  NLPLSMDEQELENMLKPFGQVISTRIL---------RDSSGTSRGVGFARMESTEKCEAV 82

Query: 504 LSK 506
           +  
Sbjct: 83  IGH 85

>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A Length = 168

 Score = 40.2 bits (95), Expect = 5e-04
 Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 11/64 (17%)

Query: 445 GLPYECTAKQVIDFFEA-GTENSCNVM-DGEEGVLFVKKPDGKATGDAFVLFEKEEEADK 502
            LP   T  Q+   F   G+    N++ D            G+  G AFV + K EEA +
Sbjct: 96  NLPRTITDDQLDTIFGKYGSIVQKNILRDKL---------TGRPRGVAFVRYNKREEAQE 146

Query: 503 ALSK 506
           A+S 
Sbjct: 147 AISA 150

>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 94

 Score = 38.5 bits (90), Expect = 5e-04
 Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 14/75 (18%)

Query: 444 RGLPYECTAKQVIDFFEA-GTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADK 502
            G P    + Q+ ++F A G   S  VMD ++GV F           A V        + 
Sbjct: 14  SGFPRGVDSAQLSEYFLAFGPVASV-VMDKDKGV-F-----------AIVEMGDVGAREA 60

Query: 503 ALSKHKESIGIRYIE 517
            LS+ + S+G   + 
Sbjct: 61  VLSQSQHSLGGHRLR 75

>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 116

 Score = 39.2 bits (92), Expect = 6e-04
 Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 11/75 (14%)

Query: 445 GLPYECTAKQVIDFFEA-GTENSCNVMDGEEGVLFVKKPD-GKATGDAFVLFEKEEEADK 502
           GL +E T + + +++E  G    C VM         + P   ++ G  FV F    E D 
Sbjct: 34  GLSFETTEESLRNYYEQWGKLTDCVVM---------RDPASKRSRGFGFVTFSSMAEVDA 84

Query: 503 ALSKHKESIGIRYIE 517
           A++    SI  R +E
Sbjct: 85  AMAARPHSIDGRVVE 99

>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 Length = 99

 Score = 38.4 bits (90), Expect = 6e-04
 Identities = 17/64 (26%), Positives = 24/64 (37%), Gaps = 11/64 (17%)

Query: 444 RGLPYECTAKQVIDFFEA-GTENSCNV-MDGEEGVLFVKKPDGKATGDAFVLFEKEEEAD 501
           R L Y  + + +   F A G  +  +  +D             K  G AFV F   E A 
Sbjct: 14  RNLSYTSSEEDLEKLFSAYGPLSELHYPIDSL---------TKKPKGFAFVTFMFPEHAV 64

Query: 502 KALS 505
           KA +
Sbjct: 65  KAYA 68

>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} PDB: 2f9d_A 2f9j_A 2fho_B Length = 115

 Score = 38.9 bits (91), Expect = 7e-04
 Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 12/62 (19%)

Query: 444 RGLPYECTAKQVIDFFEA-GTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADK 502
           R LPY+ TA+++ D F   G      V +             +  G A+V++E   +A  
Sbjct: 14  RNLPYKITAEEMYDIFGKYGPIRQIRVGN-----------TPETRGTAYVVYEDIFDAKN 62

Query: 503 AL 504
           A+
Sbjct: 63  AV 64

>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 94

 Score = 38.0 bits (89), Expect = 7e-04
 Identities = 14/63 (22%), Positives = 22/63 (34%), Gaps = 11/63 (17%)

Query: 445 GLPYECTAKQVIDFFEA-GTENSCNVM-DGEEGVLFVKKPDGKATGDAFVLFEKEEEADK 502
            LP+  T   +   F   G      +M D +           K+ G AF+LF  ++ A  
Sbjct: 23  NLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTR---------KSKGVAFILFLDKDSAQN 73

Query: 503 ALS 505
              
Sbjct: 74  CTR 76

>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 116

 Score = 38.4 bits (90), Expect = 8e-04
 Identities = 18/75 (24%), Positives = 24/75 (32%), Gaps = 11/75 (14%)

Query: 445 GLPYECTAKQVIDFFEA-GTENSCNVMDGEEGVLFVKKPD-GKATGDAFVLFEKEEEADK 502
           GLPY  T   +  +FE  G      V+              GK+ G  FV       A++
Sbjct: 24  GLPYHTTDASLRKYFEGFGDIEEAVVI---------TDRQTGKSRGYGFVTMADRAAAER 74

Query: 503 ALSKHKESIGIRYIE 517
           A       I  R   
Sbjct: 75  ACKDPNPIIDGRKAN 89

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 8e-04
 Identities = 47/390 (12%), Positives = 98/390 (25%), Gaps = 120/390 (30%)

Query: 294 QP-MNTPFFFN-MPRMPVTPQVLPKFPV------HQLNQTPTVYTIPTPGNPVALCPLVQ 345
           QP M T  +     R+    QV  K+ V       +L Q              AL  L  
Sbjct: 104 QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQ--------------ALLELRP 149

Query: 346 NIWLSLLLNTIPGYEQVLGLGGVA-LCLSAFGRRNGEAIVRF--------IDQEHRDMA- 395
              +            + G+ G     ++     + +   +         +   +     
Sbjct: 150 AKNVL-----------IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV 198

Query: 396 ---LKRHKHHIDKRYIEVTKANGEDFINVAGGNNNEAQAFLTRGAQVIIRMRGLPYEC-- 450
              L++  + ID  +   +  +    + +     +  QA L R    +++ +     C  
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRI-----HSIQAELRR----LLKSKPYE-NCLL 248

Query: 451 -----TAKQVIDFFEAG-----TENSCNVMDGEEG-----VLFVKKPDGKATGDAFVLFE 495
                   +  + F        T     V D         +            +   L  
Sbjct: 249 VLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL 308

Query: 496 K---------EEEADK----ALSKHKESIGIRYIELFRSTTAEVQQVLNKTMELPKNNSL 542
           K           E        LS     I     +   +T    + V    +       +
Sbjct: 309 KYLDCRPQDLPREVLTTNPRRLS----IIAESIRD-GLATWDNWKHVNCDKL----TTII 359

Query: 543 TSSNNGLSA--QQPMLSHLA----QVPVP-------------YLPQHIITSGTRKDCIRL 583
            SS N L     + M   L+       +P                  ++    +   +  
Sbjct: 360 ESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK 419

Query: 584 RGLPYEALCILMDIFFV----GQQDSFVHK 609
           +  P E+   +  I+       + +  +H+
Sbjct: 420 Q--PKESTISIPSIYLELKVKLENEYALHR 447

>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 101

 Score = 38.0 bits (89), Expect = 8e-04
 Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 13/64 (20%)

Query: 444 RGLPYECTAKQVIDFFE-AGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADK 502
             L Y  T + + + FE A              +   +  +GK+ G AF+ F   E+A +
Sbjct: 21  SNLSYSATEETLQEVFEKATF------------IKVPQNQNGKSKGYAFIEFASFEDAKE 68

Query: 503 ALSK 506
           AL+ 
Sbjct: 69  ALNS 72

>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus} Length = 103

 Score = 38.0 bits (89), Expect = 9e-04
 Identities = 14/73 (19%), Positives = 28/73 (38%), Gaps = 10/73 (13%)

Query: 445 GLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPD-GKATGDAFVLFEKEEEADKA 503
            LP+      +   F+       ++      V  V+  D  K  G  +V F++ +   +A
Sbjct: 22  NLPFNTVQGDIDAIFK-----DLSIRS----VRLVRDKDTDKFKGFCYVEFDEVDSLKEA 72

Query: 504 LSKHKESIGIRYI 516
           L+     +G R +
Sbjct: 73  LTYDGALLGDRSL 85

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	612
2ghp_A	292	U4/U6 snRNA-associated splicing factor PRP24; RNA	99.97
3smz_A	284	Protein raver-1, ribonucleoprotein PTB-binding 1;	99.97
1l3k_A	196	Heterogeneous nuclear ribonucleoprotein A1; nuclea	99.95
3md3_A	166	Nuclear and cytoplasmic polyadenylated RNA-bindin	99.95
4f02_A	213	Polyadenylate-binding protein 1; mRNA, eukaryotic	99.94
2cjk_A	167	Nuclear polyadenylated RNA-binding protein 4; HRP1	99.94
3smz_A	284	Protein raver-1, ribonucleoprotein PTB-binding 1;	99.94
2qfj_A	216	FBP-interacting repressor; protein-DNA complex; HE	99.94
1fxl_A	167	Paraneoplastic encephalomyelitis antigen HUD; prot	99.94
2ghp_A	292	U4/U6 snRNA-associated splicing factor PRP24; RNA	99.94
1b7f_A	168	Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP	99.93
3nmr_A	175	Cugbp ELAV-like family member 1; RRM, PRE-mRNA spl	99.93
1fje_B	175	Nucleolin RBD12, protein C23; RNP, RRM, RNA bindin	99.93
2g4b_A	172	Splicing factor U2AF 65 kDa subunit; protein-RNA c	99.93
2yh0_A	198	Splicing factor U2AF 65 kDa subunit; PRE-mRNA spli	99.92
3pgw_A	282	U1-A; protein-RNA complex, U1 snRNA, SM fold, SM c	99.9
3sde_A	261	Paraspeckle component 1; RRM, anti parallel right	99.89
3tyt_A	205	Heterogeneous nuclear ribonucleoprotein L; ferredo	99.89
2adc_A	229	Polypyrimidine tract-binding protein 1; RBD, RRM,	99.87
1qm9_A	198	Polypyrimidine tract-binding protein; ribonucleopr	99.86
1l3k_A	196	Heterogeneous nuclear ribonucleoprotein A1; nuclea	99.86
2kn4_A	158	Immunoglobulin G-binding protein G, splicing FACT	99.84
4f02_A	213	Polyadenylate-binding protein 1; mRNA, eukaryotic	99.84
2cjk_A	167	Nuclear polyadenylated RNA-binding protein 4; HRP1	99.83
3md3_A	166	Nuclear and cytoplasmic polyadenylated RNA-bindin	99.83
1fxl_A	167	Paraneoplastic encephalomyelitis antigen HUD; prot	99.82
1b7f_A	168	Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP	99.82
2dha_A	123	FLJ20171 protein; RRM domain, structural genomics,	99.82
2qfj_A	216	FBP-interacting repressor; protein-DNA complex; HE	99.81
3nmr_A	175	Cugbp ELAV-like family member 1; RRM, PRE-mRNA spl	99.8
1fje_B	175	Nucleolin RBD12, protein C23; RNP, RRM, RNA bindin	99.79
4f25_A	115	Polyadenylate-binding protein 1; RRM fold, transla	99.77
2yh0_A	198	Splicing factor U2AF 65 kDa subunit; PRE-mRNA spli	99.77
2g4b_A	172	Splicing factor U2AF 65 kDa subunit; protein-RNA c	99.77
2i2y_A	150	Fusion protein consists of immunoglobin G- binding	99.76
2db1_A	118	Heterogeneous nuclear ribonucleoprotein F; RRM dom	99.76
3pgw_A	282	U1-A; protein-RNA complex, U1 snRNA, SM fold, SM c	99.76
2dnn_A	109	RNA-binding protein 12; RRM domain, RBD, structura	99.76
2adc_A	229	Polypyrimidine tract-binding protein 1; RBD, RRM,	99.75
2hgl_A	136	HNRPF protein, heterogeneous nuclear ribonucleopro	99.75
3tyt_A	205	Heterogeneous nuclear ribonucleoprotein L; ferredo	99.74
1qm9_A	198	Polypyrimidine tract-binding protein; ribonucleopr	99.74
2lmi_A	107	GRSF-1, G-rich sequence factor 1; G-rich RNA seque	99.74
3sde_A	261	Paraspeckle component 1; RRM, anti parallel right	99.72
1wg5_A	104	Heterogeneous nuclear ribonucleoprotein H; structu	99.71
2cpy_A	114	RNA-binding protein 12; RRM domain, structural gen	99.7
2hgm_A	126	HNRPF protein, heterogeneous nuclear ribonucleopro	99.69
4fxv_A	99	ELAV-like protein 1; RNA recognition motif, putati	99.69
1wez_A	102	HnRNP H', FTP-3, heterogeneous nuclear ribonucleop	99.69
1wel_A	124	RNA-binding protein 12; structural genomics, NPPSF	99.66
3s8s_A	110	Histone-lysine N-methyltransferase SETD1A; chromat	99.65
3s7r_A	87	Heterogeneous nuclear ribonucleoprotein A/B; ferre	99.65
2lxi_A	91	RNA-binding protein 10; NMR {Homo sapiens}	99.64
2dgw_A	91	Probable RNA-binding protein 19; RRM domain, struc	99.64
2lkz_A	95	RNA-binding protein 5; RRM; NMR {Homo sapiens}	99.64
1s79_A	103	Lupus LA protein; RRM, alpha/beta, RNA binding pro	99.63
2hgn_A	139	Heterogeneous nuclear ribonucleoprotein F; RNA rec	99.63
3bs9_A	87	Nucleolysin TIA-1 isoform P40; RNA recognition mot	99.63
3md1_A	83	Nuclear and cytoplasmic polyadenylated RNA-bindin	99.63
2ywk_A	95	Putative RNA-binding protein 11; RRM-domain, struc	99.62
3p5t_L	90	Cleavage and polyadenylation specificity factor S;	99.62
2mss_A	75	Protein (musashi1); RNA-binding domain, RNA bindin	99.61
3ucg_A	89	Polyadenylate-binding protein 2; ferredoxin-like,	99.61
2dgs_A	99	DAZ-associated protein 1; RRM domain, structural g	99.61
2do4_A	100	Squamous cell carcinoma antigen recognized by T- c	99.6
3n9u_C	156	Cleavage and polyadenylation specificity factor S;	99.6
1whw_A	99	Hypothetical protein riken cDNA 1200009A02; RNA re	99.6
3ulh_A	107	THO complex subunit 4; nuclear protein, RNA bindin	99.59
2la6_A	99	RNA-binding protein FUS; structural genomics, nort	99.59
2cqc_A	95	Arginine/serine-rich splicing factor 10; RNA recog	99.59
3mdf_A	85	Peptidyl-prolyl CIS-trans isomerase E; RRM domain,	99.59
3ns6_A	100	Eukaryotic translation initiation factor 3 subuni;	99.59
2x1f_A	96	MRNA 3'-END-processing protein RNA15; transcriptio	99.59
1x5t_A	96	Splicing factor 3B subunit 4; structure genomics,	99.59
2ek1_A	95	RNA-binding protein 12; RNA recognition motif, dim	99.58
2dng_A	103	Eukaryotic translation initiation factor 4H; RRM d	99.58
2cq4_A	114	RNA binding motif protein 23; RRM domain, structur	99.58
2dnz_A	95	Probable RNA-binding protein 23; RNA recognition m	99.58
1iqt_A	75	AUF1, heterogeneous nuclear ribonucleoprotein D0;	99.58
2dh8_A	105	DAZ-associated protein 1; RRM domain, structural g	99.58
2do0_A	114	HnRNP M, heterogeneous nuclear ribonucleoprotein M	99.58
2dgo_A	115	Cytotoxic granule-associated RNA binding protein 1	99.57
2cq0_A	103	Eukaryotic translation initiation factor 3 subunit	99.57
1x5u_A	105	Splicing factor 3B subunit 4 (spliceosome associat	99.57
2cqp_A	98	RNA-binding protein 12; RNA recognition motif, RRM	99.57
2dnh_A	105	Bruno-like 5, RNA binding protein; RRM domain, RBD	99.57
2cpz_A	115	CUG triplet repeat RNA-binding protein 1; RRM doma	99.57
2rs2_A	109	Musashi-1, RNA-binding protein musashi homolog 1;	99.57
2fy1_A	116	RNA-binding motif protein, Y chromosome, family 1	99.57
3lqv_A	115	PRE-mRNA branch site protein P14; cysless mutant,	99.57
2e5h_A	94	Zinc finger CCHC-type and RNA-binding motif- conta	99.57
1p27_B	106	RNA-binding protein 8A; nuclear protein, mRNA spli	99.57
2cqb_A	102	Peptidyl-prolyl CIS-trans isomerase E; RNA recogni	99.56
2cqg_A	103	TDP-43, TAR DNA-binding protein-43; RNA recognitio	99.56
1rk8_A	165	CG8781-PA, CG8781-PA protein; mRNA processing, RRM	99.56
2d9p_A	103	Polyadenylate-binding protein 3; RRM domain, struc	99.56
1p1t_A	104	Cleavage stimulation factor, 64 kDa subunit; RNA r	99.56
2dnn_A	109	RNA-binding protein 12; RRM domain, RBD, structura	99.56
1x4b_A	116	Heterogeneous nuclear ribonucleoproteins A2/B1; st	99.56
2cpf_A	98	RNA binding motif protein 19; RNA recognition moti	99.56
2kt5_A	124	RNA and export factor-binding protein 2; chaperone	99.56
1wi8_A	104	EIF-4B, eukaryotic translation initiation factor 4	99.56
2dhg_A	104	TRNA selenocysteine associated protein (SECP43); R	99.56
1x5s_A	102	Cold-inducible RNA-binding protein; structure geno	99.55
2dgv_A	92	HnRNP M, heterogeneous nuclear ribonucleoprotein M	99.55
2cq3_A	103	RNA-binding protein 9; RRM domain, structural geno	99.55
2dnm_A	103	SRP46 splicing factor; RRM domain, RBD, structural	99.55
1uaw_A	77	Mouse-musashi-1; RNP-type structure, RNA binding p	99.55
2cpe_A	113	RNA-binding protein EWS; RNA recognition motif, RR	99.55
2jwn_A	124	Embryonic polyadenylate-binding protein 2-B; epabp	99.55
2wbr_A	89	GW182, gawky, LD47780P; DNA-binding protein, RRM,	99.55
1x4h_A	111	RNA-binding protein 28; structural genomics, RRM d	99.55
1oo0_B	110	CG8781-PA, drosophila Y14; RNA recognition motif,	99.55
2jrs_A	108	RNA-binding protein 39; RNA binding motif of RBM39	99.55
2fc9_A	101	NCL protein; structure genomics, RRM_1 domain, str	99.55
2khc_A	118	Testis-specific RNP-type RNA binding protein; RRM,	99.55
2cph_A	107	RNA binding motif protein 19; RNA recognition moti	99.55
2lea_A	135	Serine/arginine-rich splicing factor 2; SR protein	99.55
2xs2_A	102	Deleted in azoospermia-like; RNA binding protein-R	99.54
4a8x_A	88	RNA-binding protein with serine-rich domain 1; tra	99.54
2j76_E	100	EIF-4B, EIF4B, eukaryotic translation initiation f	99.54
2div_A	99	TRNA selenocysteine associated protein; structural	99.54
2cqi_A	103	Nucleolysin TIAR; RNA recognition motif, RRM, RNA	99.54
1u6f_A	139	Tcubp1, RNA-binding protein UBP1; trypanosome, mRN	99.53
2dgx_A	96	KIAA0430 protein; RRM domain, structural genomics,	99.53
2dgp_A	106	Bruno-like 4, RNA binding protein; RRM domain, str	99.53
2cqd_A	116	RNA-binding region containing protein 1; RNA recog	99.53
2err_A	109	Ataxin-2-binding protein 1; protein-RNA complex, R	99.52
1x4e_A	85	RNA binding motif, single-stranded interacting pro	99.52
4f25_A	115	Polyadenylate-binding protein 1; RRM fold, transla	99.52
2hvz_A	101	Splicing factor, arginine/serine-rich 7; RRM, RNA	99.52
2ku7_A	140	MLL1 PHD3-CYP33 RRM chimeric protein; transcriptio	99.51
2krb_A	81	Eukaryotic translation initiation factor 3 subunit	99.51
2m2b_A	131	RNA-binding protein 10; T-cell, JCSG, MPP, PSI-bio	99.51
2ki2_A	90	SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA	99.5
3ex7_B	126	RNA-binding protein 8A; protein-RNA complex, mRNA	99.5
2kxn_B	129	Transformer-2 protein homolog beta; SR protein, RR	99.5
3q2s_C	229	Cleavage and polyadenylation specificity factor S;	99.5
1fj7_A	101	Nucleolin RBD1, protein C23; RNP, RRM, RNA binding	99.5
2cpi_A	111	CCR4-NOT transcription complex subunit 4; RNA reco	99.49
2fc8_A	102	NCL protein; structure genomics, RRM_1 domain, str	99.49
1h2v_Z	156	20 kDa nuclear CAP binding protein; CAP-binding-co	99.49
2dis_A	109	Unnamed protein product; structural genomics, RRM	99.49
2nlw_A	105	Eukaryotic translation initiation factor 3 subunit	99.49
1x5o_A	114	RNA binding motif, single-stranded interacting pro	99.48
1x4a_A	109	Splicing factor, arginine/serine-rich 1 (splicing	99.48
2jvr_A	111	Nucleolar protein 3; RNA recognition motif, nucleu	99.48
1sjq_A	105	Polypyrimidine tract-binding protein 1; babbab mot	99.47
1fjc_A	96	Nucleolin RBD2, protein C23; RNP, RRM, RNA binding	99.47
3r27_A	100	HnRNP L, heterogeneous nuclear ribonucleoprotein L	99.46
2hgm_A	126	HNRPF protein, heterogeneous nuclear ribonucleopro	99.45
1x4c_A	108	Splicing factor, arginine/serine-rich 1; structura	99.45
2voo_A	193	Lupus LA protein; RNA-binding protein, RNA recogni	99.45
2cq1_A	101	PTB-like protein L; RRM domain, structural genomic	99.44
2la4_A	101	Nuclear and cytoplasmic polyadenylated RNA-bindin	99.44
1wez_A	102	HnRNP H', FTP-3, heterogeneous nuclear ribonucleop	99.44
2dha_A	123	FLJ20171 protein; RRM domain, structural genomics,	99.44
1nu4_A	97	U1A RNA binding domain; RNA recognition motif, U1	99.43
2f3j_A	177	RNA and export factor binding protein 2; RRM domai	99.43
2ad9_A	119	Polypyrimidine tract-binding protein 1; RBD, RRM,	99.43
3d2w_A	89	TAR DNA-binding protein 43; DP-43 proteinopathy, T	99.43
2e5j_A	97	Methenyltetrahydrofolate synthetase domain contain	99.43
2dnq_A	90	RNA-binding protein 4B; RRM domain,RBD, structural	99.42
2lcw_A	116	RNA-binding protein FUS; RRM, nucleic acid binding	99.14
1wg5_A	104	Heterogeneous nuclear ribonucleoprotein H; structu	99.42
2j8a_A	136	Histone-lysine N-methyltransferase, H3 lysine-4 sp	99.42
2a3j_A	127	U1 small nuclear ribonucleoprotein A; computationa	99.42
1wex_A	104	Hypothetical protein (riken cDNA 2810036L13); stru	99.42
2cpx_A	115	Hypothetical protein FLJ11016; RRM domain, structu	99.41
2ytc_A	85	PRE-mRNA-splicing factor RBM22; RRM domain, RBD, s	99.41
2hzc_A	87	Splicing factor U2AF 65 kDa subunit; RNA splicing,	99.41
1x4g_A	109	Nucleolysin TIAR; structural genomics, RRM domain,	99.41
2xnq_A	97	Nuclear polyadenylated RNA-binding protein 3; tran	99.41
2hgl_A	136	HNRPF protein, heterogeneous nuclear ribonucleopro	99.41
1why_A	97	Hypothetical protein riken cDNA 1810017N16; RNA re	99.41
2db1_A	118	Heterogeneous nuclear ribonucleoprotein F; RRM dom	99.4
2cpj_A	99	Non-POU domain-containing octamer-binding protein;	99.4
2jvo_A	108	Nucleolar protein 3; nucleus, phosphorylation, rib	99.39
2cpd_A	99	Apobec-1 stimulating protein; RNA recognition moti	99.39
2dnp_A	90	RNA-binding protein 14; RRM domain, RBD, structura	99.39
2e5g_A	94	U6 snRNA-specific terminal uridylyltransferase 1;	99.39
2cqh_A	93	IGF-II mRNA-binding protein 2 isoform A; RNA recog	99.38
1whx_A	111	Hypothetical protein riken cDNA 1200009A02; RNA re	99.38
1x4d_A	102	Matrin 3; structural genomics, RRM domain, NPPSFA,	99.38
2dgt_A	92	RNA-binding protein 30; RRM domain, structural gen	99.38
3egn_A	143	RNA-binding protein 40; RNA recognition motif (RRM	99.38
2dgu_A	103	Heterogeneous nuclear ribonucleoprotein Q; RRM dom	99.38
1wg1_A	88	KIAA1579 protein, homolog EXC-7; RBD, structural g	99.38
2dnl_A	114	Cytoplasmic polyadenylation element binding protei	99.37
1x4f_A	112	Matrin 3; structural genomics, RRM domain, NPPSFA,	99.36
2kvi_A	96	Nuclear polyadenylated RNA-binding protein 3; RNA-	99.35
3beg_B	115	Splicing factor, arginine/serine-rich 1; kinase, S	99.35
2dgw_A	91	Probable RNA-binding protein 19; RRM domain, struc	99.34
2lmi_A	107	GRSF-1, G-rich sequence factor 1; G-rich RNA seque	99.34
1wf1_A	110	RNA-binding protein RALY; structural genomics, RRM	99.34
1wf0_A	88	TDP-43, TAR DNA-binding protein-43; structural gen	99.34
2cpy_A	114	RNA-binding protein 12; RRM domain, structural gen	99.34
2pe8_A	105	Splicing factor 45; RRM, protein binding; 2.00A {H	99.34
2hgn_A	139	Heterogeneous nuclear ribonucleoprotein F; RNA rec	99.32
2e44_A	96	Insulin-like growth factor 2 mRNA binding protein	99.32
1x5p_A	97	Negative elongation factor E; structure genomics,	99.31
3pgw_S	437	U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM	99.28
4fxv_A	99	ELAV-like protein 1; RNA recognition motif, putati	99.28
1sjr_A	164	Polypyrimidine tract-binding protein 1; extended b	99.27
2cq2_A	114	Hypothetical protein LOC91801; RRM domain, structu	99.27
1wel_A	124	RNA-binding protein 12; structural genomics, NPPSF	99.27
3s8s_A	110	Histone-lysine N-methyltransferase SETD1A; chromat	99.26
1s79_A	103	Lupus LA protein; RRM, alpha/beta, RNA binding pro	99.26
3s7r_A	87	Heterogeneous nuclear ribonucleoprotein A/B; ferre	99.25
3p5t_L	90	Cleavage and polyadenylation specificity factor S;	99.25
3lqv_A	115	PRE-mRNA branch site protein P14; cysless mutant,	99.25
2lxi_A	91	RNA-binding protein 10; NMR {Homo sapiens}	99.24
3ns6_A	100	Eukaryotic translation initiation factor 3 subuni;	99.24
2mss_A	75	Protein (musashi1); RNA-binding domain, RNA bindin	99.24
2lkz_A	95	RNA-binding protein 5; RRM; NMR {Homo sapiens}	99.23
3zzy_A	130	Polypyrimidine tract-binding protein 1; protein bi	99.23
2dng_A	103	Eukaryotic translation initiation factor 4H; RRM d	99.22
2do4_A	100	Squamous cell carcinoma antigen recognized by T- c	99.22
3bs9_A	87	Nucleolysin TIA-1 isoform P40; RNA recognition mot	99.22
2ywk_A	95	Putative RNA-binding protein 11; RRM-domain, struc	99.22
1whw_A	99	Hypothetical protein riken cDNA 1200009A02; RNA re	99.22
2dgs_A	99	DAZ-associated protein 1; RRM domain, structural g	99.21
1wi8_A	104	EIF-4B, eukaryotic translation initiation factor 4	99.21
2j76_E	100	EIF-4B, EIF4B, eukaryotic translation initiation f	99.21
2e5i_A	124	Heterogeneous nuclear ribonucleoprotein L-like; RR	99.21
1jmt_A	104	Splicing factor U2AF 35 kDa subunit; RRM, RNA spli	99.2
3md1_A	83	Nuclear and cytoplasmic polyadenylated RNA-bindin	99.2
2dnz_A	95	Probable RNA-binding protein 23; RNA recognition m	99.19
1x5t_A	96	Splicing factor 3B subunit 4; structure genomics,	99.19
3ucg_A	89	Polyadenylate-binding protein 2; ferredoxin-like,	99.19
2bz2_A	121	Negative elongation factor E; NELF E, RNA recognit	99.18
2do0_A	114	HnRNP M, heterogeneous nuclear ribonucleoprotein M	99.18
3ulh_A	107	THO complex subunit 4; nuclear protein, RNA bindin	99.18
3v4m_A	105	Splicing factor U2AF 65 kDa subunit; canonical RNA	99.18
2la6_A	99	RNA-binding protein FUS; structural genomics, nort	99.17
1u6f_A	139	Tcubp1, RNA-binding protein UBP1; trypanosome, mRN	99.17
1x5u_A	105	Splicing factor 3B subunit 4 (spliceosome associat	99.17
1iqt_A	75	AUF1, heterogeneous nuclear ribonucleoprotein D0;	99.17
2e5h_A	94	Zinc finger CCHC-type and RNA-binding motif- conta	99.16
3n9u_C	156	Cleavage and polyadenylation specificity factor S;	99.16
2hvz_A	101	Splicing factor, arginine/serine-rich 7; RRM, RNA	99.16
2dh8_A	105	DAZ-associated protein 1; RRM domain, structural g	99.16
2dhg_A	104	TRNA selenocysteine associated protein (SECP43); R	99.16
2dnh_A	105	Bruno-like 5, RNA binding protein; RRM domain, RBD	99.16
2rs2_A	109	Musashi-1, RNA-binding protein musashi homolog 1;	99.16
2cqc_A	95	Arginine/serine-rich splicing factor 10; RNA recog	99.16
3mdf_A	85	Peptidyl-prolyl CIS-trans isomerase E; RRM domain,	99.16
2cpz_A	115	CUG triplet repeat RNA-binding protein 1; RRM doma	99.16
2diu_A	96	KIAA0430 protein; structural genomics, RRM domain,	99.16
2d9p_A	103	Polyadenylate-binding protein 3; RRM domain, struc	99.15
2cq0_A	103	Eukaryotic translation initiation factor 3 subunit	99.14
2dgo_A	115	Cytotoxic granule-associated RNA binding protein 1	99.14
2dnm_A	103	SRP46 splicing factor; RRM domain, RBD, structural	99.14
2fy1_A	116	RNA-binding motif protein, Y chromosome, family 1	99.14
2x1f_A	96	MRNA 3'-END-processing protein RNA15; transcriptio	99.14
2kt5_A	124	RNA and export factor-binding protein 2; chaperone	99.13
2cq4_A	114	RNA binding motif protein 23; RRM domain, structur	99.13
2cpf_A	98	RNA binding motif protein 19; RNA recognition moti	99.13
2cph_A	107	RNA binding motif protein 19; RNA recognition moti	99.13
2ek1_A	95	RNA-binding protein 12; RNA recognition motif, dim	99.12
2wbr_A	89	GW182, gawky, LD47780P; DNA-binding protein, RRM,	99.12
2dgx_A	96	KIAA0430 protein; RRM domain, structural genomics,	99.12
2err_A	109	Ataxin-2-binding protein 1; protein-RNA complex, R	99.12
1x4b_A	116	Heterogeneous nuclear ribonucleoproteins A2/B1; st	99.12
2cq3_A	103	RNA-binding protein 9; RRM domain, structural geno	99.11
2cqg_A	103	TDP-43, TAR DNA-binding protein-43; RNA recognitio	99.11
2dit_A	112	HIV TAT specific factor 1 variant; structural geno	99.11
1x5s_A	102	Cold-inducible RNA-binding protein; structure geno	99.11
2fc9_A	101	NCL protein; structure genomics, RRM_1 domain, str	99.11
2dgv_A	92	HnRNP M, heterogeneous nuclear ribonucleoprotein M	99.11
1uaw_A	77	Mouse-musashi-1; RNP-type structure, RNA binding p	99.11
1x4e_A	85	RNA binding motif, single-stranded interacting pro	99.11
2cqb_A	102	Peptidyl-prolyl CIS-trans isomerase E; RNA recogni	99.11
2jrs_A	108	RNA-binding protein 39; RNA binding motif of RBM39	99.1
2cqi_A	103	Nucleolysin TIAR; RNA recognition motif, RRM, RNA	99.1
2cqp_A	98	RNA-binding protein 12; RNA recognition motif, RRM	99.1
2cpe_A	113	RNA-binding protein EWS; RNA recognition motif, RR	99.1
2kxn_B	129	Transformer-2 protein homolog beta; SR protein, RR	99.1
1p27_B	106	RNA-binding protein 8A; nuclear protein, mRNA spli	99.1
3ue2_A	118	Poly(U)-binding-splicing factor PUF60; RNA recogni	99.09
2khc_A	118	Testis-specific RNP-type RNA binding protein; RRM,	99.09
1x4h_A	111	RNA-binding protein 28; structural genomics, RRM d	99.09
2krb_A	81	Eukaryotic translation initiation factor 3 subunit	99.09
2fc8_A	102	NCL protein; structure genomics, RRM_1 domain, str	99.09
2dgp_A	106	Bruno-like 4, RNA binding protein; RRM domain, str	99.08
2jwn_A	124	Embryonic polyadenylate-binding protein 2-B; epabp	99.08
1p1t_A	104	Cleavage stimulation factor, 64 kDa subunit; RNA r	99.08
2xs2_A	102	Deleted in azoospermia-like; RNA binding protein-R	99.07
2nlw_A	105	Eukaryotic translation initiation factor 3 subunit	99.07
1oo0_B	110	CG8781-PA, drosophila Y14; RNA recognition motif,	99.06
2m2b_A	131	RNA-binding protein 10; T-cell, JCSG, MPP, PSI-bio	99.06
2div_A	99	TRNA selenocysteine associated protein; structural	99.06
2ki2_A	90	SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA	99.05
2cpi_A	111	CCR4-NOT transcription complex subunit 4; RNA reco	99.05
3u1l_A	240	PRE-mRNA-splicing factor CWC2; CSMP, zinc finger;	99.05
2ku7_A	140	MLL1 PHD3-CYP33 RRM chimeric protein; transcriptio	99.04
2kn4_A	158	Immunoglobulin G-binding protein G, splicing FACT	99.04
2cqd_A	116	RNA-binding region containing protein 1; RNA recog	99.04
1fj7_A	101	Nucleolin RBD1, protein C23; RNP, RRM, RNA binding	99.03
3ex7_B	126	RNA-binding protein 8A; protein-RNA complex, mRNA	99.03
4a8x_A	88	RNA-binding protein with serine-rich domain 1; tra	99.02
2dis_A	109	Unnamed protein product; structural genomics, RRM	99.01
1x5o_A	114	RNA binding motif, single-stranded interacting pro	99.01
3q2s_C	229	Cleavage and polyadenylation specificity factor S;	99.01
1x4a_A	109	Splicing factor, arginine/serine-rich 1 (splicing	99.01
2jvr_A	111	Nucleolar protein 3; RNA recognition motif, nucleu	98.99
1h2v_Z	156	20 kDa nuclear CAP binding protein; CAP-binding-co	98.99
2lea_A	135	Serine/arginine-rich splicing factor 2; SR protein	98.97
2voo_A	193	Lupus LA protein; RNA-binding protein, RNA recogni	98.97
2pe8_A	105	Splicing factor 45; RRM, protein binding; 2.00A {H	98.97
2a3j_A	127	U1 small nuclear ribonucleoprotein A; computationa	98.96
2lcw_A	116	RNA-binding protein FUS; RRM, nucleic acid binding	98.51
1sjq_A	105	Polypyrimidine tract-binding protein 1; babbab mot	98.96
1wg1_A	88	KIAA1579 protein, homolog EXC-7; RBD, structural g	98.95
1fjc_A	96	Nucleolin RBD2, protein C23; RNP, RRM, RNA binding	98.95
3r27_A	100	HnRNP L, heterogeneous nuclear ribonucleoprotein L	98.94
2la4_A	101	Nuclear and cytoplasmic polyadenylated RNA-bindin	98.93
3s6e_A	114	RNA-binding protein 39; ferredoxin-like, structura	98.93
1x4c_A	108	Splicing factor, arginine/serine-rich 1; structura	98.92
1nu4_A	97	U1A RNA binding domain; RNA recognition motif, U1	98.92
2d9o_A	100	DNAJ (HSP40) homolog, subfamily C, member 17; RRM	98.92
2f3j_A	177	RNA and export factor binding protein 2; RRM domai	98.91
2cq1_A	101	PTB-like protein L; RRM domain, structural genomic	98.91
2hzc_A	87	Splicing factor U2AF 65 kDa subunit; RNA splicing,	98.88
2ad9_A	119	Polypyrimidine tract-binding protein 1; RBD, RRM,	98.88
2cpx_A	115	Hypothetical protein FLJ11016; RRM domain, structu	98.88
2dnq_A	90	RNA-binding protein 4B; RRM domain,RBD, structural	98.88
2e5j_A	97	Methenyltetrahydrofolate synthetase domain contain	98.88
2jvo_A	108	Nucleolar protein 3; nucleus, phosphorylation, rib	98.88
1rk8_A	165	CG8781-PA, CG8781-PA protein; mRNA processing, RRM	98.87
1jmt_A	104	Splicing factor U2AF 35 kDa subunit; RRM, RNA spli	98.87
2cpj_A	99	Non-POU domain-containing octamer-binding protein;	98.86
1wex_A	104	Hypothetical protein (riken cDNA 2810036L13); stru	98.86
1x4g_A	109	Nucleolysin TIAR; structural genomics, RRM domain,	98.86
2ytc_A	85	PRE-mRNA-splicing factor RBM22; RRM domain, RBD, s	98.85
2xnq_A	97	Nuclear polyadenylated RNA-binding protein 3; tran	98.85
1why_A	97	Hypothetical protein riken cDNA 1810017N16; RNA re	98.85
2e5g_A	94	U6 snRNA-specific terminal uridylyltransferase 1;	98.84
3v4m_A	105	Splicing factor U2AF 65 kDa subunit; canonical RNA	98.84
2dnp_A	90	RNA-binding protein 14; RRM domain, RBD, structura	98.84
2dnl_A	114	Cytoplasmic polyadenylation element binding protei	98.84
1x4d_A	102	Matrin 3; structural genomics, RRM domain, NPPSFA,	98.84
3tht_A	345	Alkylated DNA repair protein ALKB homolog 8; struc	98.82
2dgu_A	103	Heterogeneous nuclear ribonucleoprotein Q; RRM dom	98.8
2i2y_A	150	Fusion protein consists of immunoglobin G- binding	98.8
3egn_A	143	RNA-binding protein 40; RNA recognition motif (RRM	98.8
2cpd_A	99	Apobec-1 stimulating protein; RNA recognition moti	98.79
2cqh_A	93	IGF-II mRNA-binding protein 2 isoform A; RNA recog	98.78
1whx_A	111	Hypothetical protein riken cDNA 1200009A02; RNA re	98.78
2dgt_A	92	RNA-binding protein 30; RRM domain, structural gen	98.77
3d2w_A	89	TAR DNA-binding protein 43; DP-43 proteinopathy, T	98.77
3beg_B	115	Splicing factor, arginine/serine-rich 1; kinase, S	98.75
1x5p_A	97	Negative elongation factor E; structure genomics,	98.75
1wf1_A	110	RNA-binding protein RALY; structural genomics, RRM	98.75
2kvi_A	96	Nuclear polyadenylated RNA-binding protein 3; RNA-	98.74
2e44_A	96	Insulin-like growth factor 2 mRNA binding protein	98.74
1x4f_A	112	Matrin 3; structural genomics, RRM domain, NPPSFA,	98.73
2j8a_A	136	Histone-lysine N-methyltransferase, H3 lysine-4 sp	98.7
2cq2_A	114	Hypothetical protein LOC91801; RRM domain, structu	98.7
1sjr_A	164	Polypyrimidine tract-binding protein 1; extended b	98.7
3ue2_A	118	Poly(U)-binding-splicing factor PUF60; RNA recogni	98.69
3pgw_S	437	U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM	98.69
1wf0_A	88	TDP-43, TAR DNA-binding protein-43; structural gen	98.69
2bz2_A	121	Negative elongation factor E; NELF E, RNA recognit	98.64
3zzy_A	130	Polypyrimidine tract-binding protein 1; protein bi	98.62
2dit_A	112	HIV TAT specific factor 1 variant; structural geno	98.61
2e5i_A	124	Heterogeneous nuclear ribonucleoprotein L-like; RR	98.6
1owx_A	121	Lupus LA protein, SS-B, LA; RRM, transcription; NM	98.6
3s6e_A	114	RNA-binding protein 39; ferredoxin-like, structura	98.59
2d9o_A	100	DNAJ (HSP40) homolog, subfamily C, member 17; RRM	98.45
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	98.44
2dnr_A	91	Synaptojanin-1; RRM domain, RBD, structural genomi	98.42
3u1l_A	240	PRE-mRNA-splicing factor CWC2; CSMP, zinc finger;	98.41
2diu_A	96	KIAA0430 protein; structural genomics, RRM domain,	98.38
1ufw_A	95	Synaptojanin 2; RNP domain, structural genomics, r	98.24
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	98.07
3tht_A	345	Alkylated DNA repair protein ALKB homolog 8; struc	97.94
1ufw_A	95	Synaptojanin 2; RNP domain, structural genomics, r	97.93
2dnr_A	91	Synaptojanin-1; RRM domain, RBD, structural genomi	97.83
2l9w_A	117	U4/U6 snRNA-associated-splicing factor PRP24; RRM,	97.48
1owx_A	121	Lupus LA protein, SS-B, LA; RRM, transcription; NM	97.34
2dhx_A	104	Poly (ADP-ribose) polymerase family, member 10 var	97.09
2dhx_A	104	Poly (ADP-ribose) polymerase family, member 10 var	97.05
3p3d_A	132	Nucleoporin 53; structural genomics, PSI-2, protei	96.06
1wwh_A	119	Nucleoporin 35, nucleoporin; structural genomics,	96.01
1whv_A	100	Poly(A)-specific ribonuclease; RNA recognition mot	95.08
1wwh_A	119	Nucleoporin 35, nucleoporin; structural genomics,	94.79
2l9w_A	117	U4/U6 snRNA-associated-splicing factor PRP24; RRM,	93.62
1uw4_A	91	UPF3X; nonsense mediated mRNA decay protein, RNA-b	93.25
3ctr_A	101	Poly(A)-specific ribonuclease PARN; protein-RNA-co	93.2
1wey_A	104	Calcipressin 1; structural genomics, RRM domain, r	90.65
3p3d_A	132	Nucleoporin 53; structural genomics, PSI-2, protei	90.48
3pq1_A	464	Poly(A) RNA polymerase; nucleotidyl transferase, R	84.53
2l08_A	97	Regulator of nonsense transcripts 3A; NESG, nonsen	80.91

>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A

Probab=99.97  E-value=1.2e-30  Score=265.60  Aligned_cols=201  Identities=16%  Similarity=0.062  Sum_probs=156.8

Q ss_pred             ccceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccCccch
Q psy16116        340 LCPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGEDF  418 (612)
Q Consensus       340 l~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~~~e~  418 (612)
                      .+|+|+|||.+.++++|+++|.. +.+.+|+|+.+.+| ++|||||+|.+.++|++||++++..++|+.|.|..+.    
T Consensus        42 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~-~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~~~~----  116 (292)
T 2ghp_A           42 TTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK-NFRFARIEFARYDGALAAITKTHKVVGQNEIIVSHLT----  116 (292)
T ss_dssp             CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS-SSEEEEEEESSHHHHHHHHTTTTCEETTEECEEEECC----
T ss_pred             CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC-CcEEEEEEECCHHHHHHHHHhCCcEeCCcEEEEEECC----
Confidence            34556666666555555555544 45889999998876 5899999999999999999999999999999996542    


Q ss_pred             hhccCCCCcchhhhccCCcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHH
Q psy16116        419 INVAGGNNNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEE  498 (612)
Q Consensus       419 ~~~~g~~~~e~~~~~~~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~e  498 (612)
                                         ..+|||+|||+++++++|+++|+.||+       .+..|+++.+..|+++|||||+|.+.+
T Consensus       117 -------------------~~~l~v~nlp~~~t~~~l~~~f~~~G~-------~i~~v~i~~~~~~~~~g~afV~f~~~~  170 (292)
T 2ghp_A          117 -------------------ECTLWMTNFPPSYTQRNIRDLLQDINV-------VALSIRLPSLRFNTSRRFAYIDVTSKE  170 (292)
T ss_dssp             -------------------SCEEEEECCCTTCCHHHHHHHHHHTTC-------CCCEEECC-------CCEEEEECSSHH
T ss_pred             -------------------CCEEEEECCCCCCCHHHHHHHHHHhCC-------CeEEEEEEeCCCCCcceEEEEEECCHH
Confidence                               246999999999999999999999993       346799998888999999999999999


Q ss_pred             HHHHHHH-hCCcccCCEEEEEEecchHHHHHHhhhhcCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCcccccCCCc
Q psy16116        499 EADKALS-KHKESIGIRYIELFRSTTAEVQQVLNKTMELPKNNSLTSSNNGLSAQQPMLSHLAQVPVPYLPQHIITSGTR  577 (612)
Q Consensus       499 dA~kAL~-~~~~~iggR~IeV~~as~~e~~~~~~~~~~~~~~~~~~~e~~~~s~~~~~~~~~s~~p~~~~~~~~~~~~~~  577 (612)
                      +|.+|++ +++..++||.|.|..+.......             +..                            .....
T Consensus       171 ~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~-------------~~~----------------------------~~~~~  209 (292)
T 2ghp_A          171 DARYCVEKLNGLKIEGYTLVTKVSNPLEKSK-------------RTD----------------------------SATLE  209 (292)
T ss_dssp             HHHHHHHHHTTCEETTEECEEEECCCC--------------------------------------------------CCT
T ss_pred             HHHHHHHHhCCCEeCCcEEEEEECCCCcccc-------------ccc----------------------------ccCCC
Confidence            9999998 89999999999998876332110             000                            00124


Q ss_pred             ccEEEEcCCCcc-CCHHHHHHhhccCCcEeEeeCCC
Q psy16116        578 KDCIRLRGLPYE-ALCILMDIFFVGQQDSFVHKVPK  612 (612)
Q Consensus       578 ~~~VfVrNLPf~-vTeeDLkefFs~~gdI~~~kip~  612 (612)
                      .++|||+|||++ +|+++|+++|+.||.|..+++++
T Consensus       210 ~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~  245 (292)
T 2ghp_A          210 GREIMIRNLSTELLDENLLRESFEGFGSIEKINIPA  245 (292)
T ss_dssp             TTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCS
T ss_pred             CceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEe
Confidence            578999999999 99999999999999999888864

>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E

Probab=99.97  E-value=7.5e-30  Score=258.82  Aligned_cols=192  Identities=14%  Similarity=0.184  Sum_probs=159.0

Q ss_pred             ccceecCCCHHHHHhhHhhcccccCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCccch
Q psy16116        340 LCPLVQNIWLSLLLNTIPGYEQVLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGEDF  418 (612)
Q Consensus       340 l~vlV~nLp~~~~e~~fkeff~~~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~e~  418 (612)
                      .+|+|+|||.+.++++|+++|...++.++.+     |+++|||||+|.+.++|++|++ +++..++|+.|.|..+.    
T Consensus        23 ~~l~V~nLp~~~te~~l~~~F~~~Gi~~~~~-----~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~----   93 (284)
T 3smz_A           23 RKILIRGLPGDVTNQEVHDLLSDYELKYCFV-----DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQP----   93 (284)
T ss_dssp             CEEEEECCCTTCCHHHHHHHTTTSCEEEEEE-----ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC----
T ss_pred             CEEEEeCCCCCCCHHHHHHHHHHcCCEEEEE-----ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecC----
Confidence            3556777777777777777777655767766     6789999999999999999996 79999999999996532    


Q ss_pred             hhccCCCCcchhhhccCCcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCH
Q psy16116        419 INVAGGNNNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKE  497 (612)
Q Consensus       419 ~~~~g~~~~e~~~~~~~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~  497 (612)
                                        ...+|||+|||+++++++|+++|+.||        .+..++++.+. +|+++|||||+|.+.
T Consensus        94 ------------------~~~~l~v~nlp~~~t~~~l~~~f~~~G--------~i~~~~i~~~~~~g~~~g~afV~f~~~  147 (284)
T 3smz_A           94 ------------------TDALLCVANLPPSLTQQQFEELVRPFG--------SLERCFLVYSERTGQSKGYGFAEYMKK  147 (284)
T ss_dssp             ------------------CSCEEEEESCCTTCCHHHHHHHHGGGS--------CEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred             ------------------CCCEEEEcCCCCcCCHHHHHHHHHhcC--------CeeEEEEEeeCCCCccceEEEEEECCH
Confidence                              124699999999999999999999999        45679998886 899999999999999


Q ss_pred             HHHHHHH-HhCCcccCCEEEEEEecchHHHHHHhhhhcCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCcccccCCC
Q psy16116        498 EEADKAL-SKHKESIGIRYIELFRSTTAEVQQVLNKTMELPKNNSLTSSNNGLSAQQPMLSHLAQVPVPYLPQHIITSGT  576 (612)
Q Consensus       498 edA~kAL-~~~~~~iggR~IeV~~as~~e~~~~~~~~~~~~~~~~~~~e~~~~s~~~~~~~~~s~~p~~~~~~~~~~~~~  576 (612)
                      ++|.+|+ .+++..++||.|.|..+.....          .      .                             ...
T Consensus       148 ~~a~~A~~~l~~~~~~g~~i~v~~a~~~~~----------~------~-----------------------------~~~  182 (284)
T 3smz_A          148 DSAARAKSDLLGKPLGPRTLYVHWTDAGQL----------T------P-----------------------------ALL  182 (284)
T ss_dssp             HHHHHHHHHHTTCEETTEECEEEECCGGGC----------C------T-----------------------------TTT
T ss_pred             HHHHHHHHHhCCCEeCCcEEEEEECCCCCC----------C------c-----------------------------ccC
Confidence            9999999 5899999999999988754210          0      0                             012


Q ss_pred             cccEEEEcCCCccC-CHHHHHHhhccCCcEeEeeCC
Q psy16116        577 RKDCIRLRGLPYEA-LCILMDIFFVGQQDSFVHKVP  611 (612)
Q Consensus       577 ~~~~VfVrNLPf~v-TeeDLkefFs~~gdI~~~kip  611 (612)
                      ...+|||+|||+++ |++||+++|+.||.|..++|+
T Consensus       183 ~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~  218 (284)
T 3smz_A          183 HSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLA  218 (284)
T ss_dssp             SCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEE
T ss_pred             CccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEE
Confidence            34689999999995 999999999999988776653

>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A

Probab=99.95  E-value=9.5e-28  Score=228.78  Aligned_cols=168  Identities=17%  Similarity=0.214  Sum_probs=132.2

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccCccch
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGEDF  418 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~~~e~  418 (612)
                      +|+|+|||++.++++|+++|.. +.+.+|+++.++ +|+++|||||+|.+.++|++||+.++..++|+.|.|..+.....
T Consensus        15 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~~~~~~~   94 (196)
T 1l3k_A           15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSRED   94 (196)
T ss_dssp             EEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEECCC---
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeecccCccc
Confidence            4445566655555555555544 458899999986 48899999999999999999999999999999999987754322


Q ss_pred             hhccCCCCcchhhhccCCcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCH
Q psy16116        419 INVAGGNNNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKE  497 (612)
Q Consensus       419 ~~~~g~~~~e~~~~~~~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~  497 (612)
                      ....+          ......+|||+|||+++++++|+++|+.||        .+..|+|+.|. +|+++|||||+|.+.
T Consensus        95 ~~~~~----------~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G--------~i~~v~i~~~~~~g~~~g~afV~F~~~  156 (196)
T 1l3k_A           95 SQRPG----------AHLTVKKIFVGGIKEDTEEHHLRDYFEQYG--------KIEVIEIMTDRGSGKKRGFAFVTFDDH  156 (196)
T ss_dssp             ------------------CCSEEEEECCTTTCCHHHHHHHHTTTS--------CEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred             ccccc----------cCCCcceEEEeCCCCCCCHHHHHHHHhcCC--------CeEEEEEeecCCCCCccceEEEEECCH
Confidence            11000          112346899999999999999999999999        45779999986 799999999999999


Q ss_pred             HHHHHHHHhCCcccCCEEEEEEecchHHH
Q psy16116        498 EEADKALSKHKESIGIRYIELFRSTTAEV  526 (612)
Q Consensus       498 edA~kAL~~~~~~iggR~IeV~~as~~e~  526 (612)
                      ++|.+||+.++..++||.|+|..+..++.
T Consensus       157 ~~A~~A~~~~~~~~~G~~i~v~~a~~k~~  185 (196)
T 1l3k_A          157 DSVDKIVIQKYHTVNGHNCEVRKALSKQE  185 (196)
T ss_dssp             HHHHHHHHCSCCEETTEECEEEECC----
T ss_pred             HHHHHHHHhCCcEECCEEEEEEecCChhH
Confidence            99999999899999999999999876553

>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}

Probab=99.95  E-value=4.1e-27  Score=217.47  Aligned_cols=159  Identities=13%  Similarity=0.172  Sum_probs=131.3

Q ss_pred             ceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHH-HhCCCccCceEEEEeccCccchh
Q psy16116        342 PLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMAL-KRHKHHIDKRYIEVTKANGEDFI  419 (612)
Q Consensus       342 vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL-~~ng~~IggR~IeV~~s~~~e~~  419 (612)
                      ++|+|||.+.++++|+++|.. +.+.+|+++.+++|+++|||||+|.+.++|++|+ .+++..++|+.|.|..+......
T Consensus         3 l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~~~   82 (166)
T 3md3_A            3 LYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQQS   82 (166)
T ss_dssp             EEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCCCC
T ss_pred             EEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCCCC
Confidence            445555555555555554443 3588999999999999999999999999999999 58999999999999776543110


Q ss_pred             hccCCCCcchhhhccCCcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHH
Q psy16116        420 NVAGGNNNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEE  498 (612)
Q Consensus       420 ~~~g~~~~e~~~~~~~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~e  498 (612)
                                    ......+|||+|||+++++++|+++|+.||        .+..++++.+. +|+++|||||+|.+.+
T Consensus        83 --------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G--------~i~~~~i~~~~~~~~~~g~afV~f~~~~  140 (166)
T 3md3_A           83 --------------SSDDTFNLFVGDLNVNVDDETLRNAFKDFP--------SYLSGHVMWDMQTGSSRGYGFVSFTSQD  140 (166)
T ss_dssp             --------------CCTTCEEEEEESCCTTCCHHHHHHHHTTST--------TEEEEEEEECTTTCCEEEEEEEEESCHH
T ss_pred             --------------CCCCCceEEECCCCCCCCHHHHHHHHhccC--------CeeEEEEEecCCCCCcceEEEEEeCCHH
Confidence                          112356899999999999999999999999        45679999885 7999999999999999


Q ss_pred             HHHHHHH-hCCcccCCEEEEEEecc
Q psy16116        499 EADKALS-KHKESIGIRYIELFRST  522 (612)
Q Consensus       499 dA~kAL~-~~~~~iggR~IeV~~as  522 (612)
                      +|.+|++ +|+..++||.|.|..+.
T Consensus       141 ~A~~A~~~l~g~~~~g~~i~v~~a~  165 (166)
T 3md3_A          141 DAQNAMDSMQGQDLNGRPLRINWAA  165 (166)
T ss_dssp             HHHHHHHHHTTCEETTEECEEEESC
T ss_pred             HHHHHHHHhCCCccCCcEEEEEecC
Confidence            9999997 79999999999999875

>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*

Probab=99.94  E-value=8.8e-27  Score=228.38  Aligned_cols=161  Identities=17%  Similarity=0.131  Sum_probs=130.2

Q ss_pred             eecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCccchh
Q psy16116        343 LVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGEDFI  419 (612)
Q Consensus       343 lV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~e~~  419 (612)
                      +|+|||++.++++|+++|.. +.+.+|+|++++ +|+++|||||+|.+.++|++||+ +++..++||.|++..+......
T Consensus        19 fVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~~~~~~   98 (213)
T 4f02_A           19 YVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSL   98 (213)
T ss_dssp             EEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCTHH
T ss_pred             EEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccccccccc
Confidence            35555555555555554443 458899999986 48999999999999999999996 7899999999999766543211


Q ss_pred             hccCCCCcchhhhccCCcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHH
Q psy16116        420 NVAGGNNNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEE  499 (612)
Q Consensus       420 ~~~g~~~~e~~~~~~~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~ed  499 (612)
                      ..              ....+|||+|||+++++++|+++|+.||        .+..|+|+.|. ++++|||||+|.+.++
T Consensus        99 ~~--------------~~~~~l~v~nl~~~~t~~~l~~~F~~~G--------~i~~~~i~~d~-~~~~g~~fV~f~~~~~  155 (213)
T 4f02_A           99 RK--------------SGVGNIFIKNLDKSIDNKALYDTFSAFG--------NILSCKVVCDE-NGSKGYGFVHFETQEA  155 (213)
T ss_dssp             HH--------------HCTTEEEEESCCTTCCHHHHHHHHGGGS--------CEEEEEEEEET-TEEEEEEEEEESSHHH
T ss_pred             cc--------------cccccceECCcccccHHHHHHHHHhhcC--------CeEEEEeeccC-CCCceEEEEEeCCHHH
Confidence            11              1235699999999999999999999999        45679999885 4589999999999999


Q ss_pred             HHHHHH-hCCcccCCEEEEEEecchHHH
Q psy16116        500 ADKALS-KHKESIGIRYIELFRSTTAEV  526 (612)
Q Consensus       500 A~kAL~-~~~~~iggR~IeV~~as~~e~  526 (612)
                      |++||+ +|+..|+||.|.|..+..++.
T Consensus       156 a~~Ai~~lng~~~~g~~i~V~~a~~~~~  183 (213)
T 4f02_A          156 AERAIEKMNGMLLNDRKVFVGRFKSRKE  183 (213)
T ss_dssp             HHHHHHHHTTCEETTEECEEEECCCHHH
T ss_pred             HHHHHHHhCCCEECCEEEEEEEcCCCcc
Confidence            999996 799999999999999976543

>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C

Probab=99.94  E-value=1.8e-27  Score=221.29  Aligned_cols=158  Identities=16%  Similarity=0.201  Sum_probs=132.5

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccCccch
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGEDF  418 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~~~e~  418 (612)
                      +++|+|||.+.++++|+++|.. +.+.+|++++++ +|+++|||||+|.+.++|++|++. ++.++|+.|.|..+.....
T Consensus         5 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~i~v~~~~~~~~   83 (167)
T 2cjk_A            5 KMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT-QHILDGKVIDPKRAIPRDE   83 (167)
T ss_dssp             EEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS-CCEETTEECCCEECCCHHH
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc-ccccCCeEcccccccchhh
Confidence            4557777777666666666654 458899999885 699999999999999999999984 6789999998876654321


Q ss_pred             hhccCCCCcchhhhccCCcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCH
Q psy16116        419 INVAGGNNNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKE  497 (612)
Q Consensus       419 ~~~~g~~~~e~~~~~~~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~  497 (612)
                      .                ....+|||+|||+++++++|+++|+.||        .+..++++.+. +|+++|||||+|.+.
T Consensus        84 ~----------------~~~~~l~V~nlp~~~t~~~l~~~F~~~G--------~i~~~~i~~~~~~g~~~g~afV~f~~~  139 (167)
T 2cjk_A           84 Q----------------DKTGKIFVGGIGPDVRPKEFEEFFSQWG--------TIIDAQLMLDKDTGQSRGFGFVTYDSA  139 (167)
T ss_dssp             H----------------HHCEEEEEEEECTTCCHHHHHHHHHTTS--------CCSEEECCCSSSSSTTSEEEEEEESSH
T ss_pred             c----------------cCCCeEEECCCCCCCCHHHHHHHHHhCc--------cEEEEEEEEcCCCCccceEEEEEECCH
Confidence            1                1235799999999999999999999999        45679999886 799999999999999


Q ss_pred             HHHHHHHHhCCcccCCEEEEEEecch
Q psy16116        498 EEADKALSKHKESIGIRYIELFRSTT  523 (612)
Q Consensus       498 edA~kAL~~~~~~iggR~IeV~~as~  523 (612)
                      ++|.+|+++++..++||.|.|..+.+
T Consensus       140 ~~a~~A~~~~~~~~~g~~i~V~~a~p  165 (167)
T 2cjk_A          140 DAVDRVCQNKFIDFKDRKIEIKRAEP  165 (167)
T ss_dssp             HHHHHHHHCSEECSSSSCEEEEECCC
T ss_pred             HHHHHHHhCCCEEeCCeEEEEeecCC
Confidence            99999999999999999999998764

>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E

Probab=99.94  E-value=2.4e-25  Score=225.71  Aligned_cols=152  Identities=14%  Similarity=0.124  Sum_probs=127.9

Q ss_pred             HHHHhhHhhcccccCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHH-HhCCCccCceEEEEeccCccchhhccCCCCc
Q psy16116        350 SLLLNTIPGYEQVLGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMAL-KRHKHHIDKRYIEVTKANGEDFINVAGGNNN  427 (612)
Q Consensus       350 ~~~e~~fkeff~~~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL-~~ng~~IggR~IeV~~s~~~e~~~~~g~~~~  427 (612)
                      ++++++|+.|+   .+.+|+++.++ +|+++|||||+|.+.++|.+|+ .+++..++|+.|.|..+.......       
T Consensus       110 ~~l~~~f~~~G---~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~~~~-------  179 (284)
T 3smz_A          110 QQFEELVRPFG---SLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQLTP-------  179 (284)
T ss_dssp             HHHHHHHGGGS---CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGGGCCT-------
T ss_pred             HHHHHHHHhcC---CeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCCCc-------
Confidence            55555555554   48889988876 6999999999999999999999 589999999999998776532110       


Q ss_pred             chhhhccCCcccEEEEeCCCCC-CCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-
Q psy16116        428 EAQAFLTRGAQVIIRMRGLPYE-CTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-  505 (612)
Q Consensus       428 e~~~~~~~~~~~~VfV~nLP~s-~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-  505 (612)
                            ......+|||+|||++ +++++|+++|+.||        .+..|+|+.+.+|+++|||||+|.+.++|.+|++ 
T Consensus       180 ------~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G--------~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~  245 (284)
T 3smz_A          180 ------ALLHSRCLCVDRLPPGFNDVDALCRALSAVH--------SPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQ  245 (284)
T ss_dssp             ------TTTSCSEEEEECCCTTCCCHHHHHHHTCSSS--------CCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHH
T ss_pred             ------ccCCccEEEEecCCcccCCHHHHHHHhhCCC--------CeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHH
Confidence                  1123468999999999 59999999999999        4567999999999999999999999999999997 


Q ss_pred             hCCcccCCEEEEEEecchHH
Q psy16116        506 KHKESIGIRYIELFRSTTAE  525 (612)
Q Consensus       506 ~~~~~iggR~IeV~~as~~e  525 (612)
                      +|+..++||.|.|..+..++
T Consensus       246 l~g~~~~g~~l~v~~a~~~~  265 (284)
T 3smz_A          246 ADGLSLGGSHLRVSFCAPGP  265 (284)
T ss_dssp             HTTCEETTEECEEEECCSSS
T ss_pred             hCCCccCCeEEEEEEecCCC
Confidence            79999999999999996544

>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A

Probab=99.94  E-value=1.8e-26  Score=223.16  Aligned_cols=169  Identities=18%  Similarity=0.197  Sum_probs=131.4

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCccc
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGED  417 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~e  417 (612)
                      +|+|+|||.+.++++|+++|.. +.+.+|++++++ +|+++|||||+|.+.++|++||+ +++..|+|+.|.|..+....
T Consensus        30 ~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~~~  109 (216)
T 2qfj_A           30 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIG  109 (216)
T ss_dssp             EEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSCCG
T ss_pred             EEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCCcc
Confidence            3445666665555555555544 458899998886 68999999999999999999998 89999999999997665432


Q ss_pred             hhhccCCCCcchhhhccCCcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCC
Q psy16116        418 FINVAGGNNNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEK  496 (612)
Q Consensus       418 ~~~~~g~~~~e~~~~~~~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s  496 (612)
                      .....     ............+|||+|||++++++||+++|+.||        .+..|+|+.+. +|+++|||||+|.+
T Consensus       110 ~~~~~-----~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G--------~v~~v~i~~~~~~g~~~g~afV~F~~  176 (216)
T 2qfj_A          110 QAQPI-----IDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFG--------KIKSATLARDPTTGKHKGYGFIEYEK  176 (216)
T ss_dssp             GGHHH-----HHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSS--------CEEEEEEEECTTTCCEEEEEEEEESS
T ss_pred             ccchh-----hhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccC--------CeeEEEEEecCCCCCcCceEEEEecC
Confidence            21100     000000123457899999999999999999999999        45779999986 79999999999999


Q ss_pred             HHHHHHHHH-hCCcccCCEEEEEEecc
Q psy16116        497 EEEADKALS-KHKESIGIRYIELFRST  522 (612)
Q Consensus       497 ~edA~kAL~-~~~~~iggR~IeV~~as  522 (612)
                      .++|.+|++ +|+..|+||.|.|..+.
T Consensus       177 ~~~A~~A~~~l~g~~~~g~~i~V~~a~  203 (216)
T 2qfj_A          177 AQSSQDAVSSMNLFDLGGQYLRVGKAV  203 (216)
T ss_dssp             HHHHHHHHHHHTTCBCSSSBCEEEECS
T ss_pred             HHHHHHHHHHccCCEeCCcEEEEEEec
Confidence            999999997 79999999999998865

>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A

Probab=99.94  E-value=6.5e-26  Score=209.61  Aligned_cols=156  Identities=17%  Similarity=0.174  Sum_probs=128.8

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCccc
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGED  417 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~e  417 (612)
                      +++|+|||.+.++++|+++|.. +.+.+|+++.++ +|+++|||||+|.+.++|++|++ +++..++|+.|.|..+....
T Consensus         4 ~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~   83 (167)
T 1fxl_A            4 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSS   83 (167)
T ss_dssp             EEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred             eEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCCCc
Confidence            4456666666555555555544 458899999987 79999999999999999999997 89999999999997765421


Q ss_pred             hhhccCCCCcchhhhccCCcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCC
Q psy16116        418 FINVAGGNNNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEK  496 (612)
Q Consensus       418 ~~~~~g~~~~e~~~~~~~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s  496 (612)
                      .                .....+|||+|||+++++++|+++|+.||        .+..++++.+. +|+++|||||+|.+
T Consensus        84 ~----------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G--------~i~~~~i~~~~~~g~~~g~afV~f~~  139 (167)
T 1fxl_A           84 A----------------SIRDANLYVSGLPKTMTQKELEQLFSQYG--------RIITSRILVDQVTGVSRGVGFIRFDK  139 (167)
T ss_dssp             G----------------GGTTCEEEEESCCTTCCHHHHHHHHGGGS--------CEEEEEEEECTTTCCEEEEEEEEESS
T ss_pred             c----------------cCCCCcEEECCCCCcCCHHHHHHHHHhcC--------CEeEEEEEecCCCCCccceEEEEeCC
Confidence            1                01235799999999999999999999999        45679999887 89999999999999


Q ss_pred             HHHHHHHHH-hCCcccCCEE--EEEEe
Q psy16116        497 EEEADKALS-KHKESIGIRY--IELFR  520 (612)
Q Consensus       497 ~edA~kAL~-~~~~~iggR~--IeV~~  520 (612)
                      .++|.+|++ +|+..++||.  |.|..
T Consensus       140 ~~~A~~A~~~l~g~~~~g~~~~i~v~~  166 (167)
T 1fxl_A          140 RIEAEEAIKGLNGQKPSGATEPITVKF  166 (167)
T ss_dssp             HHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred             HHHHHHHHHHhcCCccCCCccceEEEe
Confidence            999999997 7999999986  66654

>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A

Probab=99.94  E-value=1.7e-25  Score=227.73  Aligned_cols=155  Identities=15%  Similarity=0.111  Sum_probs=120.7

Q ss_pred             HHHHhhHhhcccccCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCccchhhccCCCCcc
Q psy16116        350 SLLLNTIPGYEQVLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGEDFINVAGGNNNE  428 (612)
Q Consensus       350 ~~~e~~fkeff~~~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~e~~~~~g~~~~e  428 (612)
                      +++.++|+.|+.  .+.+|+++.++.|+++|||||+|.+.++|++|++ +++..++|+.|.|..+..........     
T Consensus       132 ~~l~~~f~~~G~--~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~~-----  204 (292)
T 2ghp_A          132 RNIRDLLQDINV--VALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLEKSKRTD-----  204 (292)
T ss_dssp             HHHHHHHHHTTC--CCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC------------
T ss_pred             HHHHHHHHHhCC--CeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCccccccc-----
Confidence            555566655551  4789999999889999999999999999999998 89999999999998775432211100     


Q ss_pred             hhhhccCCcccEEEEeCCCCC-CCHHHHHHHHhcCCCCccccccCceeEEEeeCCC--CCceeEEEEEeCCHHHHHHHHH
Q psy16116        429 AQAFLTRGAQVIIRMRGLPYE-CTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPD--GKATGDAFVLFEKEEEADKALS  505 (612)
Q Consensus       429 ~~~~~~~~~~~~VfV~nLP~s-~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~--GrskG~AFV~F~s~edA~kAL~  505 (612)
                          .......+|||+|||++ +++++|+++|+.||        .+..|+|+.+.+  |+++|||||+|.+.++|.+|+.
T Consensus       205 ----~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G--------~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~~  272 (292)
T 2ghp_A          205 ----SATLEGREIMIRNLSTELLDENLLRESFEGFG--------SIEKINIPAGQKEHSFNNCCAFMVFENKDSAERALQ  272 (292)
T ss_dssp             ------CCTTTEEEEEEECTTTCCHHHHHHHHGGGS--------CEEEEECCSCCC---CCCEEEEEEESSHHHHHHHGG
T ss_pred             ----ccCCCCceEEEECCCcccCCHHHHHHHHhccC--------CeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHHH
Confidence                01124578999999999 99999999999999        456799998887  9999999999999999999997


Q ss_pred             hCCcccCCEEEEEEecch
Q psy16116        506 KHKESIGIRYIELFRSTT  523 (612)
Q Consensus       506 ~~~~~iggR~IeV~~as~  523 (612)
                      +|+..|+||.|.|..+.+
T Consensus       273 l~g~~~~g~~i~V~~a~~  290 (292)
T 2ghp_A          273 MNRSLLGNREISVSLADK  290 (292)
T ss_dssp             GTTEEETTEEEEEEECCC
T ss_pred             hcCCEECCcEEEEEEecC
Confidence            799999999999998864

>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A

Probab=99.93  E-value=6.4e-26  Score=210.63  Aligned_cols=157  Identities=17%  Similarity=0.131  Sum_probs=129.7

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCccc
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGED  417 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~e  417 (612)
                      +++|+|||.+.++++|+++|.. +.+.+|+++.++ +|+++|||||+|.+.++|++|++ +++..++|+.|.|..+....
T Consensus         5 ~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~   84 (168)
T 1b7f_A            5 NLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGG   84 (168)
T ss_dssp             EEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCS
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCCCc
Confidence            4446666665555555555544 458899998885 68999999999999999999997 89999999999997765421


Q ss_pred             hhhccCCCCcchhhhccCCcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCC
Q psy16116        418 FINVAGGNNNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEK  496 (612)
Q Consensus       418 ~~~~~g~~~~e~~~~~~~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s  496 (612)
                      .                .....+|||+|||+++++++|+++|+.||        .+..++++.+. +|+++|||||+|.+
T Consensus        85 ~----------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G--------~i~~~~i~~~~~~~~~~g~afV~f~~  140 (168)
T 1b7f_A           85 E----------------SIKDTNLYVTNLPRTITDDQLDTIFGKYG--------SIVQKNILRDKLTGRPRGVAFVRYNK  140 (168)
T ss_dssp             S----------------TTTTCEEEEESCCTTCCHHHHHHHHTSSS--------CEEEEEEEECTTTCCEEEEEEEEESS
T ss_pred             c----------------cCCCCCEEEeCCCCCCCHHHHHHhhhcCC--------cEEEEEEEEcCCCCCcceEEEEEECC
Confidence            1                11346799999999999999999999999        45779999987 89999999999999


Q ss_pred             HHHHHHHHH-hCCcccCC--EEEEEEec
Q psy16116        497 EEEADKALS-KHKESIGI--RYIELFRS  521 (612)
Q Consensus       497 ~edA~kAL~-~~~~~igg--R~IeV~~a  521 (612)
                      .++|.+|++ +|+..++|  |.|+|..+
T Consensus       141 ~~~A~~A~~~l~g~~~~g~~~~l~V~~A  168 (168)
T 1b7f_A          141 REEAQEAISALNNVIPEGGSQPLSVRLA  168 (168)
T ss_dssp             HHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred             HHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence            999999997 79999977  99998764

>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A

Probab=99.93  E-value=1.4e-25  Score=209.34  Aligned_cols=159  Identities=15%  Similarity=0.134  Sum_probs=125.1

Q ss_pred             ccceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCC---CCcceEEEEeCCHHHHHHHHH-hCCCccC---ceEEEEe
Q psy16116        340 LCPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFG---RRNGEAIVRFIDQEHRDMALK-RHKHHID---KRYIEVT  411 (612)
Q Consensus       340 l~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~G---rsrG~AFVeF~S~EdA~kAL~-~ng~~Ig---gR~IeV~  411 (612)
                      .+++|+|||++.++++|+++|.. +.+.+|++++++.+   +++|||||+|.+.++|++|++ +++..+.   ++.+.+.
T Consensus         4 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~~   83 (175)
T 3nmr_A            4 IKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMK   83 (175)
T ss_dssp             EEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEE
T ss_pred             eEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEEc
Confidence            34556666666666666655554 45889999998876   799999999999999999997 7776654   4556664


Q ss_pred             ccCccchhhccCCCCcchhhhccCCcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEE
Q psy16116        412 KANGEDFINVAGGNNNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAF  491 (612)
Q Consensus       412 ~s~~~e~~~~~g~~~~e~~~~~~~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AF  491 (612)
                      .+.....               ......+|||+|||+++++++|+++|+.||        .+..|+++.+.+|+++||||
T Consensus        84 ~~~~~~~---------------~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G--------~i~~v~~~~~~~g~~~g~af  140 (175)
T 3nmr_A           84 PADSEKN---------------NAVEDRKLFIGMISKKCTENDIRVMFSSFG--------QIEECRILRGPDGLSRGCAF  140 (175)
T ss_dssp             ECGGGCC---------------SCGGGSEEEEESCCTTCCHHHHHHHHGGGS--------CEEEEEEEECTTSCEEEEEE
T ss_pred             ccccccc---------------ccCCCCeEEEcCCCCcCCHHHHHHHHHhCC--------CEEEEEEEECCCCCEEEEEE
Confidence            4432210               011346799999999999999999999999        45789999999999999999


Q ss_pred             EEeCCHHHHHHHHH-hCCcccC---CEEEEEEec
Q psy16116        492 VLFEKEEEADKALS-KHKESIG---IRYIELFRS  521 (612)
Q Consensus       492 V~F~s~edA~kAL~-~~~~~ig---gR~IeV~~a  521 (612)
                      |+|.+.++|.+|++ +|+..+.   +|.|.|..+
T Consensus       141 V~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~a  174 (175)
T 3nmr_A          141 VTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFA  174 (175)
T ss_dssp             EEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEEC
T ss_pred             EEECCHHHHHHHHHHhcCCcccCCCCCCeEEEec
Confidence            99999999999995 7887665   499999875

>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A

Probab=99.93  E-value=3.3e-26  Score=215.00  Aligned_cols=145  Identities=23%  Similarity=0.292  Sum_probs=118.6

Q ss_pred             HHHHhhHhhcccccCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccCccchhhccCCCCcch
Q psy16116        350 SLLLNTIPGYEQVLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGEDFINVAGGNNNEA  429 (612)
Q Consensus       350 ~~~e~~fkeff~~~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~~~e~~~~~g~~~~e~  429 (612)
                      ++++++|+.||..   .++.+....+|+++|||||+|.+.++|++||++++..++||.|.|..+...+..          
T Consensus        28 ~~l~~~f~~~g~~---~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~~~~~~~~~----------   94 (175)
T 1fje_B           28 AELKVAISELFAK---NDLAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGRDSK----------   94 (175)
T ss_dssp             HHHHHHHHHHHHH---HTCCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEECCCCSSCS----------
T ss_pred             HHHHHHHHHhCCc---ceEEEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEEecCCCcccc----------
Confidence            5566666677653   233344445789999999999999999999999999999999999877643110          


Q ss_pred             hhhccCCcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCC
Q psy16116        430 QAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHK  508 (612)
Q Consensus       430 ~~~~~~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~  508 (612)
                          ......+|||+|||+++++++|+++|+.||    .       |+++ +.+|+++|||||+|.+.++|.+|++ +|+
T Consensus        95 ----~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g----~-------v~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l~g  158 (175)
T 1fje_B           95 ----KVRAARTLLAKNLSFNITEDELKEVFEDAL----E-------IRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQG  158 (175)
T ss_dssp             ----TTGGGGEEEEESCCSSCCHHHHHHHCTTCS----E-------EEEE-CSSSSCCSEEEEECSSHHHHHHHHHHHTE
T ss_pred             ----ccccCCEEEEeCCCCCCCHHHHHHHHHhcC----e-------EEEe-cCCCCCceEEEEEECCHHHHHHHHHHhCC
Confidence                011346899999999999999999999999    2       4555 6789999999999999999999997 799


Q ss_pred             cccCCEEEEEEecch
Q psy16116        509 ESIGIRYIELFRSTT  523 (612)
Q Consensus       509 ~~iggR~IeV~~as~  523 (612)
                      ..++||.|.|..+..
T Consensus       159 ~~~~g~~i~v~~a~~  173 (175)
T 1fje_B          159 AEIDGRSVSLYYTGE  173 (175)
T ss_dssp             EEETTEEEEEEECSS
T ss_pred             CEECCeEEEEEecCC
Confidence            999999999998754

>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A

Probab=99.93  E-value=1.6e-25  Score=209.01  Aligned_cols=144  Identities=13%  Similarity=0.163  Sum_probs=118.3

Q ss_pred             HHHHhhHhhcccc-c-------CeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccCccchhhc
Q psy16116        350 SLLLNTIPGYEQV-L-------GLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGEDFINV  421 (612)
Q Consensus       350 ~~~e~~fkeff~~-~-------~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~~~e~~~~  421 (612)
                      ++++++|+.|+.. +       .+.++.+     ++++|||||+|.+.++|++|+++++..++|+.|.|..+.....   
T Consensus        19 ~~l~~~F~~~g~~~g~~~~~~~~v~~~~~-----~~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~~~~~~~~---   90 (172)
T 2g4b_A           19 EAMMDFFNAQMRLGGLTQAPGNPVLAVQI-----NQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQP---   90 (172)
T ss_dssp             HHHHHHHHHHHHHTTCCSSSSCSEEEEEE-----ETTTTEEEEEESSHHHHHHHGGGTTCEETTEECEEECCSSCCC---
T ss_pred             HHHHHHHHHHhhhcccccCCCCceeeeEe-----cCCCCEEEEEeCCHHHHHHHHHhCCcEecCceeeecCCcccCC---
Confidence            5566666666432 1       3344443     5678999999999999999999899999999999976543211   


Q ss_pred             cCCCCcchhhhccCCcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHH
Q psy16116        422 AGGNNNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEA  500 (612)
Q Consensus       422 ~g~~~~e~~~~~~~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA  500 (612)
                                   .....+|||+|||+++++++|+++|+.||        .+..|+++.+. +|+++|||||+|.+.++|
T Consensus        91 -------------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G--------~v~~v~i~~~~~~g~~~g~afV~f~~~~~A  149 (172)
T 2g4b_A           91 -------------LPGAHKLFIGGLPNYLNDDQVKELLTSFG--------PLKAFNLVKDSATGLSKGYAFCEYVDINVT  149 (172)
T ss_dssp             -------------CTTTTCEEEECCCTTCCHHHHHHHHHTTS--------CEEEEEEEECTTTCSEEEEEEEEESSTTHH
T ss_pred             -------------CCCCCEEEEEcCCCcCCHHHHHHHHHhcC--------CceEEEEEecCCCCCcceEEEEEeCCHHHH
Confidence                         11235699999999999999999999999        45779999996 899999999999999999


Q ss_pred             HHHHH-hCCcccCCEEEEEEecc
Q psy16116        501 DKALS-KHKESIGIRYIELFRST  522 (612)
Q Consensus       501 ~kAL~-~~~~~iggR~IeV~~as  522 (612)
                      .+|++ +|+..++||.|.|..++
T Consensus       150 ~~A~~~l~g~~~~g~~l~V~~As  172 (172)
T 2g4b_A          150 DQAIAGLNGMQLGDKKLLVQRAS  172 (172)
T ss_dssp             HHHHHHHTTCEETTEECEEEECC
T ss_pred             HHHHHHcCCCEECCeEEEEEeCC
Confidence            99997 79999999999998764

>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A

Probab=99.92  E-value=3.8e-25  Score=211.04  Aligned_cols=161  Identities=12%  Similarity=0.145  Sum_probs=122.4

Q ss_pred             HHHHhhHhhcccc-c-------CeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccCccchhhc
Q psy16116        350 SLLLNTIPGYEQV-L-------GLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGEDFINV  421 (612)
Q Consensus       350 ~~~e~~fkeff~~-~-------~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~~~e~~~~  421 (612)
                      ++++++|+.|+.. +       .+.++.     .|+++|||||+|.+.++|++||++++..|+|+.|.|..+........
T Consensus        19 ~~l~~~F~~~g~i~g~~~~~~~~v~~~~-----~~~~~g~afV~F~~~~~A~~Al~l~g~~~~g~~i~v~~~~~~~~~~~   93 (198)
T 2yh0_A           19 EAMMDFFNAQMRLGGLTQAPGNPVLAVQ-----INQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPLPG   93 (198)
T ss_dssp             HHHHHHHHHHHHHHTCCSSSSCSEEEEE-----EETTTTEEEEEESCSHHHHHHGGGTTEEETTEEEEEECCCCCCCCCC
T ss_pred             HHHHHHHHHHHhhcccccCCCCceEEeE-----ecCCCCEEEEEeCCHHHHHHHHHhcCCEEcCceEEEeCCCCCCCCCC
Confidence            5666666666432 1       233333     36789999999999999999999899999999999987754321110


Q ss_pred             cCCCCc-c---hhhhccCCcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCC
Q psy16116        422 AGGNNN-E---AQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEK  496 (612)
Q Consensus       422 ~g~~~~-e---~~~~~~~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s  496 (612)
                      ...... .   ...........+|||+|||+++++++|+++|+.||        .+..|+++.+. +|+++|||||+|.+
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G--------~v~~~~~~~~~~~~~~~g~afV~f~~  165 (198)
T 2yh0_A           94 MSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFG--------PLKAFNLVKDSATGLSKGYAFCEYVD  165 (198)
T ss_dssp             SSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBS--------CEEEEEEEECTTTCSEEEEEEEEESS
T ss_pred             CcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcC--------CccEEEEeecCCCCCcceEEEEEECC
Confidence            000000 0   00000123568899999999999999999999999        45779999986 89999999999999


Q ss_pred             HHHHHHHHH-hCCcccCCEEEEEEecch
Q psy16116        497 EEEADKALS-KHKESIGIRYIELFRSTT  523 (612)
Q Consensus       497 ~edA~kAL~-~~~~~iggR~IeV~~as~  523 (612)
                      .++|.+|++ +|+..++||.|.|..+..
T Consensus       166 ~~~a~~A~~~l~g~~~~g~~l~v~~a~~  193 (198)
T 2yh0_A          166 INVTDQAIAGLNGMQLGDKKLLVQRASV  193 (198)
T ss_dssp             SSHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred             HHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence            999999997 799999999999998753

>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A

Probab=99.90  E-value=7.1e-23  Score=207.32  Aligned_cols=168  Identities=16%  Similarity=0.123  Sum_probs=123.1

Q ss_pred             cceecCCCHHHHHhhHh----hcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccC
Q psy16116        341 CPLVQNIWLSLLLNTIP----GYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKAN  414 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fk----eff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~  414 (612)
                      +|+|+||+++.++++|+    ++|.. +.+.+|++++  +|+++|||||+|.+.++|++||+ +|+..|+||.|.|..+.
T Consensus        11 ~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~   88 (282)
T 3pgw_A           11 TIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAK   88 (282)
T ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC--CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEEec
Confidence            34455555555444433    55554 4578888765  78899999999999999999994 89999999999997664


Q ss_pred             ccch--hhccCCCCc-------------c----------------------h----------------------------
Q psy16116        415 GEDF--INVAGGNNN-------------E----------------------A----------------------------  429 (612)
Q Consensus       415 ~~e~--~~~~g~~~~-------------e----------------------~----------------------------  429 (612)
                      ....  .+..+....             +                      .                            
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~p~  168 (282)
T 3pgw_A           89 TDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMPPPG  168 (282)
T ss_pred             cCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCCCCCCC
Confidence            3221  000000000             0                      0                            


Q ss_pred             ------------------------------hhhccCCcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEe
Q psy16116        430 ------------------------------QAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFV  479 (612)
Q Consensus       430 ------------------------------~~~~~~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~  479 (612)
                                                    ..........+|||+|||+++++++|+++|+.||        .+..|+|+
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G--------~i~~v~~~  240 (282)
T 3pgw_A          169 MIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFP--------GFKEVRLV  240 (282)
T ss_pred             CCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcC--------CeEEEEEe
Confidence                                          0000112457899999999999999999999999        45678888


Q ss_pred             eCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccC-CEEEEEEecc
Q psy16116        480 KKPDGKATGDAFVLFEKEEEADKALS-KHKESIG-IRYIELFRST  522 (612)
Q Consensus       480 ~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~ig-gR~IeV~~as  522 (612)
                      .++    +|||||+|.+.++|.+|++ +|+..++ ||.|.|..+.
T Consensus       241 ~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak  281 (282)
T 3pgw_A          241 PGR----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK  281 (282)
T ss_pred             cCC----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence            543    6899999999999999997 7999999 9999998764

>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B

Probab=99.89  E-value=5.1e-23  Score=207.87  Aligned_cols=149  Identities=17%  Similarity=0.123  Sum_probs=125.2

Q ss_pred             ccceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCccc
Q psy16116        340 LCPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGED  417 (612)
Q Consensus       340 l~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~e  417 (612)
                      .+|+|+|||++.++++|+++|.. +.+.+|++.     +++|||||+|.+.++|++|+. +++..|+|+.|.|..+..  
T Consensus        23 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~-----~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~--   95 (261)
T 3sde_A           23 CRLFVGNLPTDITEEDFKRLFERYGEPSEVFIN-----RDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATH--   95 (261)
T ss_dssp             GEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEE-----TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC--
T ss_pred             CEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEe-----CCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeeccc--
Confidence            34556777776666666666654 457888884     468999999999999999997 899999999999976642  


Q ss_pred             hhhccCCCCcchhhhccCCcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCH
Q psy16116        418 FINVAGGNNNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKE  497 (612)
Q Consensus       418 ~~~~~g~~~~e~~~~~~~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~  497 (612)
                                          ..+|||+|||+++++++|+++|+.||        .+..|.|+.|.+|+++|||||+|.+.
T Consensus        96 --------------------~~~l~v~nl~~~~t~~~l~~~F~~~G--------~i~~v~i~~~~~g~~~g~afV~f~~~  147 (261)
T 3sde_A           96 --------------------GAALTVKNLSPVVSNELLEQAFSQFG--------PVEKAVVVVDDRGRATGKGFVEFAAK  147 (261)
T ss_dssp             --------------------SSEEEEESCCTTCCHHHHHHHHGGGS--------CEEEEEEEEETTSCEEEEEEEEESSH
T ss_pred             --------------------CCcccccCCCCCCCHHHHHHHHHhcC--------CeEEEEeeeCCCCCcCcEEEEEeCCH
Confidence                                24699999999999999999999999        45779999999999999999999999


Q ss_pred             HHHHHHHH-h-CCcccC---CEEEEEEecch
Q psy16116        498 EEADKALS-K-HKESIG---IRYIELFRSTT  523 (612)
Q Consensus       498 edA~kAL~-~-~~~~ig---gR~IeV~~as~  523 (612)
                      ++|.+||+ + ++..+.   +|.|.|..+..
T Consensus       148 ~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~  178 (261)
T 3sde_A          148 PPARKALERCGDGAFLLTTTPRPVIVEPMEQ  178 (261)
T ss_dssp             HHHHHHHHHHHHSCEESSSSCCBCEEEECCC
T ss_pred             HHHHHHHHHhcCCeEEecCCCceEEEeeccc
Confidence            99999997 4 666665   89999998764

>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A

Probab=99.89  E-value=5.9e-23  Score=201.73  Aligned_cols=163  Identities=11%  Similarity=0.122  Sum_probs=118.0

Q ss_pred             cceecCCC-HHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCccc
Q psy16116        341 CPLVQNIW-LSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGED  417 (612)
Q Consensus       341 ~vlV~nLp-~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~e  417 (612)
                      +++|+||+ ++.++++|+++|.. +.+.+|+++++    ++|||||+|.+.++|++|++ +|+..+.||.|.|..+....
T Consensus         6 ~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~~   81 (205)
T 3tyt_A            6 VLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQPA   81 (205)
T ss_dssp             EEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSC
T ss_pred             EEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCCc
Confidence            44566666 55555555554443 45889998764    47999999999999999997 89999999999998775432


Q ss_pred             hhhc-----cCCCC--c-----chhhhc---------cCCcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeE
Q psy16116        418 FINV-----AGGNN--N-----EAQAFL---------TRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGV  476 (612)
Q Consensus       418 ~~~~-----~g~~~--~-----e~~~~~---------~~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I  476 (612)
                      ....     ..+..  .     ....+.         ......+|||+|||++++|++|+++|+.||    .|  ...+|
T Consensus        82 ~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G----~v--~~~~v  155 (205)
T 3tyt_A           82 IMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELG----VK--RPTSV  155 (205)
T ss_dssp             CCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHT----CC--CCSEE
T ss_pred             cCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcC----Cc--ceEEE
Confidence            1000     00000  0     000000         012456899999999999999999999999    33  12678


Q ss_pred             EEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCE
Q psy16116        477 LFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIR  514 (612)
Q Consensus       477 ~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR  514 (612)
                      ++..+. |+++|||||+|.+.++|.+||. +|+..|+|+
T Consensus       156 ~~~~~~-~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~  193 (205)
T 3tyt_A          156 KVFSGK-SERSSSGLLEWDSKSDALETLGFLNHYQMKNP  193 (205)
T ss_dssp             EECSCC-SSSSEEEEEECSSHHHHHHHHHHHTTCEECCS
T ss_pred             EEEcCC-CCCceEEEEEeCCHHHHHHHHHHhCCCCccCC
Confidence            887765 6677999999999999999996 799999887

>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A

Probab=99.87  E-value=1e-21  Score=194.41  Aligned_cols=156  Identities=17%  Similarity=0.241  Sum_probs=116.5

Q ss_pred             HHHHhhHhhcccccCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCccchhhccCC----
Q psy16116        350 SLLLNTIPGYEQVLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGEDFINVAGG----  424 (612)
Q Consensus       350 ~~~e~~fkeff~~~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~e~~~~~g~----  424 (612)
                      ++++++|+.|+   .+.+|++++++    +|||||+|.+.++|++|++ +++..++|+.|.|..+...........    
T Consensus        50 ~~L~~~F~~~G---~i~~v~i~~~~----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~  122 (229)
T 2adc_A           50 QSLFILFGVYG---DVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQ  122 (229)
T ss_dssp             HHHHHHHHHHT---CEEEEEECCTT----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSCCCCCCCCSSSSTT
T ss_pred             HHHHHHHHhCC---CeEEEEEEECC----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCccccCcccccccc
Confidence            55555555554   48899998764    7899999999999999997 899999999999987654311100000    


Q ss_pred             --------CCc------chhhh-ccCCcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeE
Q psy16116        425 --------NNN------EAQAF-LTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGD  489 (612)
Q Consensus       425 --------~~~------e~~~~-~~~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~  489 (612)
                              ...      ..... .......+|||+|||+++++++|+++|+.||.       .+..|+++.+    ++||
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~-------~i~~v~i~~~----~~g~  191 (229)
T 2adc_A          123 GLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGG-------VVKGFKFFQK----DRKM  191 (229)
T ss_dssp             TTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSC-------CEEEEEECSS----STTC
T ss_pred             ccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCC-------CeeEEEEEEC----CCcE
Confidence                    000      00000 00124688999999999999999999999993       2456777542    4789


Q ss_pred             EEEEeCCHHHHHHHHH-hCCcccC-CEEEEEEecch
Q psy16116        490 AFVLFEKEEEADKALS-KHKESIG-IRYIELFRSTT  523 (612)
Q Consensus       490 AFV~F~s~edA~kAL~-~~~~~ig-gR~IeV~~as~  523 (612)
                      |||+|.+.++|.+|++ +|+..++ ||.|.|..+..
T Consensus       192 afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~  227 (229)
T 2adc_A          192 ALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS  227 (229)
T ss_dssp             EEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSS
T ss_pred             EEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecC
Confidence            9999999999999997 7999999 99999988753

>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1

Probab=99.86  E-value=5.2e-22  Score=190.52  Aligned_cols=167  Identities=17%  Similarity=0.212  Sum_probs=120.1

Q ss_pred             cceecCCCH-HHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCccc
Q psy16116        341 CPLVQNIWL-SLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGED  417 (612)
Q Consensus       341 ~vlV~nLp~-~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~e  417 (612)
                      +++|+|||. +.++++|+++|.. +.+.+|+++.++    +|||||+|.+.++|++|++ +++..++|+.|.|..+....
T Consensus         5 ~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~   80 (198)
T 1qm9_A            5 VLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQN   80 (198)
T ss_dssp             EEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCS
T ss_pred             EEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCC
Confidence            344555555 4444444444433 347888887764    7899999999999999997 89999999999997765431


Q ss_pred             hhhccCC-C-Cc--------chhhhc---------cCCcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEE
Q psy16116        418 FINVAGG-N-NN--------EAQAFL---------TRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLF  478 (612)
Q Consensus       418 ~~~~~g~-~-~~--------e~~~~~---------~~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i  478 (612)
                      ....... . ..        ....+.         ......+|||+|||+++++++|+++|+.||.       .+..|++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~-------~v~~v~i  153 (198)
T 1qm9_A           81 VQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGG-------VVKGFKF  153 (198)
T ss_dssp             CCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTS-------CCCEEEE
T ss_pred             cCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCC-------CceEEEE
Confidence            1100000 0 00        000000         0124688999999999999999999999993       2456787


Q ss_pred             eeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccC-CEEEEEEecc
Q psy16116        479 VKKPDGKATGDAFVLFEKEEEADKALS-KHKESIG-IRYIELFRST  522 (612)
Q Consensus       479 ~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~ig-gR~IeV~~as  522 (612)
                      ..+    .+|+|||+|.+.++|.+|++ +|+..++ ||.|.|..+.
T Consensus       154 ~~~----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~  195 (198)
T 1qm9_A          154 FQK----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK  195 (198)
T ss_dssp             SST----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEEC
T ss_pred             EeC----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeec
Confidence            543    37999999999999999997 7999999 9999998865

>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A

Probab=99.86  E-value=2.5e-21  Score=184.29  Aligned_cols=125  Identities=19%  Similarity=0.233  Sum_probs=103.8

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHHhCCcccCCEE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALSKHKESIGIRY  515 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~~~~~~iggR~  515 (612)
                      ..++|||+|||+++++++|+++|+.||        .+..|.|+.+. +|+++|||||+|.+.++|++||+.++..++||.
T Consensus        12 ~~~~l~V~nLp~~~te~~l~~~F~~~G--------~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~   83 (196)
T 1l3k_A           12 QLRKLFIGGLSFETTDESLRSHFEQWG--------TLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRV   83 (196)
T ss_dssp             GGGEEEEESCCTTCCHHHHHHHHGGGS--------CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhCC--------CEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEE
Confidence            457899999999999999999999999        45679999986 699999999999999999999999999999999


Q ss_pred             EEEEecchHHHHHHhhhhcCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCcccccCCCcccEEEEcCCCccCCHHHH
Q psy16116        516 IELFRSTTAEVQQVLNKTMELPKNNSLTSSNNGLSAQQPMLSHLAQVPVPYLPQHIITSGTRKDCIRLRGLPYEALCILM  595 (612)
Q Consensus       516 IeV~~as~~e~~~~~~~~~~~~~~~~~~~e~~~~s~~~~~~~~~s~~p~~~~~~~~~~~~~~~~~VfVrNLPf~vTeeDL  595 (612)
                      |.|..+...+...       .+      .                             ......+|||+|||+++|+++|
T Consensus        84 l~v~~~~~~~~~~-------~~------~-----------------------------~~~~~~~l~V~nLp~~~t~~~l  121 (196)
T 1l3k_A           84 VEPKRAVSREDSQ-------RP------G-----------------------------AHLTVKKIFVGGIKEDTEEHHL  121 (196)
T ss_dssp             CEEEECCC-----------------------------------------------------CCSEEEEECCTTTCCHHHH
T ss_pred             eeeecccCccccc-------cc------c-----------------------------cCCCcceEEEeCCCCCCCHHHH
Confidence            9999875432110       00      0                             0113468999999999999999


Q ss_pred             HHhhccCCcEeEeeCC
Q psy16116        596 DIFFVGQQDSFVHKVP  611 (612)
Q Consensus       596 kefFs~~gdI~~~kip  611 (612)
                      +++|+.||+|..++++
T Consensus       122 ~~~F~~~G~i~~v~i~  137 (196)
T 1l3k_A          122 RDYFEQYGKIEVIEIM  137 (196)
T ss_dssp             HHHHTTTSCEEEEEEE
T ss_pred             HHHHhcCCCeEEEEEe
Confidence            9999999998877664

>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}

Probab=99.84  E-value=1e-20  Score=176.50  Aligned_cols=143  Identities=15%  Similarity=0.219  Sum_probs=104.7

Q ss_pred             eEEEeeCCCCCCcceEEEEeCCHHHHHHHHHh-CCC-ccCceEEEEeccCccchhhccCCCCcchhhhccCCcccEEEEe
Q psy16116        367 GVALCLSAFGRRNGEAIVRFIDQEHRDMALKR-HKH-HIDKRYIEVTKANGEDFINVAGGNNNEAQAFLTRGAQVIIRMR  444 (612)
Q Consensus       367 ~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~~-ng~-~IggR~IeV~~s~~~e~~~~~g~~~~e~~~~~~~~~~~~VfV~  444 (612)
                      .++|+++.. +++|||||+|.+.++|++|++. ++. .+++.. .+................   ..........+|||+
T Consensus         2 ~~kl~ln~~-~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~v~   76 (158)
T 2kn4_A            2 QYKLILNGK-TLKGETTTEAVDAATAEKVFKQYANDNGVDGEW-TYDDATKTFTVTEGSHHH---HHHMDVEGMTSLKVD   76 (158)
T ss_dssp             EEEEEEECS-SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEE-EEETTTTEEEEECCCCCS---SCCCCCCBCCEEEEE
T ss_pred             cEEEEecCc-cccchhHHHHHHHHhHHHHHHhhcccCCCCCcc-cccCcccccccccccccc---ccccCCCCCCEEEEe
Confidence            456777654 7899999999999999999963 433 344433 332221111000000000   000011245789999


Q ss_pred             CCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEEEEEEecc
Q psy16116        445 GLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIRYIELFRST  522 (612)
Q Consensus       445 nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~IeV~~as  522 (612)
                      |||+++++++|+++|+.||        .+..|+|+.|. +|+++|||||+|.+.++|++||+ +|+..++||.|.|..+.
T Consensus        77 nl~~~~~~~~l~~~F~~~G--------~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~  148 (158)
T 2kn4_A           77 NLTYRTSPDTLRRVFEKYG--------RVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMAR  148 (158)
T ss_dssp             SCCTTCCHHHHHHHHHHHS--------CEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEEC
T ss_pred             CCCCCCCHHHHHHHHHhcC--------CeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence            9999999999999999999        45679999886 79999999999999999999996 79999999999999875

>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*

Probab=99.84  E-value=1.4e-20  Score=184.32  Aligned_cols=121  Identities=14%  Similarity=0.124  Sum_probs=102.9

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIR  514 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR  514 (612)
                      ...+|||+|||+++||++|+++|+.||        .+.+|+|++|. +|+++|||||+|.+.++|++||+ +++..++||
T Consensus        14 p~~tlfVgnLp~~~te~~L~~~F~~~G--------~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~   85 (213)
T 4f02_A           14 PMASLYVGDLHPDVTEAMLYEKFSPAG--------PILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGK   85 (213)
T ss_dssp             -CCEEEEESCCTTCCHHHHHHHHGGGS--------CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHhhC--------CEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCc
Confidence            346899999999999999999999999        45679999987 79999999999999999999996 699999999


Q ss_pred             EEEEEecchHHHHHHhhhhcCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCcccccCCCcccEEEEcCCCccCCHHH
Q psy16116        515 YIELFRSTTAEVQQVLNKTMELPKNNSLTSSNNGLSAQQPMLSHLAQVPVPYLPQHIITSGTRKDCIRLRGLPYEALCIL  594 (612)
Q Consensus       515 ~IeV~~as~~e~~~~~~~~~~~~~~~~~~~e~~~~s~~~~~~~~~s~~p~~~~~~~~~~~~~~~~~VfVrNLPf~vTeeD  594 (612)
                      .|.|..+.......                                              .....+|||+|||+++|+++
T Consensus        86 ~i~~~~~~~~~~~~----------------------------------------------~~~~~~l~v~nl~~~~t~~~  119 (213)
T 4f02_A           86 PVRIMWSQRDPSLR----------------------------------------------KSGVGNIFIKNLDKSIDNKA  119 (213)
T ss_dssp             ECEEEECCCCTHHH----------------------------------------------HHCTTEEEEESCCTTCCHHH
T ss_pred             cccccccccccccc----------------------------------------------ccccccceECCcccccHHHH
Confidence            99987754221110                                              00235799999999999999


Q ss_pred             HHHhhccCCcEeEeeCC
Q psy16116        595 MDIFFVGQQDSFVHKVP  611 (612)
Q Consensus       595 LkefFs~~gdI~~~kip  611 (612)
                      |+++|+.||+|..++|+
T Consensus       120 l~~~F~~~G~i~~~~i~  136 (213)
T 4f02_A          120 LYDTFSAFGNILSCKVV  136 (213)
T ss_dssp             HHHHHGGGSCEEEEEEE
T ss_pred             HHHHHhhcCCeEEEEee
Confidence            99999999999888764

>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C

Probab=99.83  E-value=1.4e-20  Score=174.67  Aligned_cols=117  Identities=17%  Similarity=0.267  Sum_probs=101.3

Q ss_pred             ccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHHhCCcccCCEEE
Q psy16116        438 QVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALSKHKESIGIRYI  516 (612)
Q Consensus       438 ~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~~~~~~iggR~I  516 (612)
                      .++|||+|||+++|+++|+++|+.||        .+.+|+++.+. +|+++|||||+|.+.++|++||+. ++.++||.|
T Consensus         3 ~~~l~v~nLp~~~t~~~l~~~F~~~G--------~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~i   73 (167)
T 2cjk_A            3 SCKMFIGGLNWDTTEDNLREYFGKYG--------TVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT-QHILDGKVI   73 (167)
T ss_dssp             GGEEEECSCCTTCCHHHHHHHHTTTC--------CEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS-CCEETTEEC
T ss_pred             CcEEEEeCCCCCCCHHHHHHHHHhCC--------CEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc-ccccCCeEc
Confidence            46899999999999999999999999        45679999886 799999999999999999999984 678999999


Q ss_pred             EEEecchHHHHHHhhhhcCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCcccccCCCcccEEEEcCCCccCCHHHHH
Q psy16116        517 ELFRSTTAEVQQVLNKTMELPKNNSLTSSNNGLSAQQPMLSHLAQVPVPYLPQHIITSGTRKDCIRLRGLPYEALCILMD  596 (612)
Q Consensus       517 eV~~as~~e~~~~~~~~~~~~~~~~~~~e~~~~s~~~~~~~~~s~~p~~~~~~~~~~~~~~~~~VfVrNLPf~vTeeDLk  596 (612)
                      .|..+......                                                ....+|||+|||+++|+++|+
T Consensus        74 ~v~~~~~~~~~------------------------------------------------~~~~~l~V~nlp~~~t~~~l~  105 (167)
T 2cjk_A           74 DPKRAIPRDEQ------------------------------------------------DKTGKIFVGGIGPDVRPKEFE  105 (167)
T ss_dssp             CCEECCCHHHH------------------------------------------------HHCEEEEEEEECTTCCHHHHH
T ss_pred             ccccccchhhc------------------------------------------------cCCCeEEECCCCCCCCHHHHH
Confidence            98876543211                                                023579999999999999999


Q ss_pred             HhhccCCcEeEeeCC
Q psy16116        597 IFFVGQQDSFVHKVP  611 (612)
Q Consensus       597 efFs~~gdI~~~kip  611 (612)
                      ++|+.||+|..++++
T Consensus       106 ~~F~~~G~i~~~~i~  120 (167)
T 2cjk_A          106 EFFSQWGTIIDAQLM  120 (167)
T ss_dssp             HHHHTTSCCSEEECC
T ss_pred             HHHHhCccEEEEEEE
Confidence            999999999887775

>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}

Probab=99.83  E-value=3.9e-20  Score=170.59  Aligned_cols=119  Identities=14%  Similarity=0.140  Sum_probs=101.5

Q ss_pred             cEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCcccCCEEEE
Q psy16116        439 VIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKAL-SKHKESIGIRYIE  517 (612)
Q Consensus       439 ~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL-~~~~~~iggR~Ie  517 (612)
                      ++|||+|||+++++++|+++|+.||        .+.+|+++.+++|+++|||||+|.+.++|++|+ .+++..++||.|.
T Consensus         1 R~l~V~nlp~~~t~~~l~~~f~~~G--------~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~   72 (166)
T 3md3_A            1 RVLYVGNLDKAITEDILKQYFQVGG--------PIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVK   72 (166)
T ss_dssp             CEEEEEEEETTCCHHHHHHHHGGGS--------CEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred             CEEEECCCCCcCCHHHHHHHHHhcC--------CeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeE
Confidence            3699999999999999999999999        457799999999999999999999999999999 5899999999999


Q ss_pred             EEecchHHHHHHhhhhcCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCcccccCCCcccEEEEcCCCccCCHHHHHH
Q psy16116        518 LFRSTTAEVQQVLNKTMELPKNNSLTSSNNGLSAQQPMLSHLAQVPVPYLPQHIITSGTRKDCIRLRGLPYEALCILMDI  597 (612)
Q Consensus       518 V~~as~~e~~~~~~~~~~~~~~~~~~~e~~~~s~~~~~~~~~s~~p~~~~~~~~~~~~~~~~~VfVrNLPf~vTeeDLke  597 (612)
                      |..+....           .      .                             ......+|||+|||+++|+++|++
T Consensus        73 v~~~~~~~-----------~------~-----------------------------~~~~~~~l~v~nl~~~~t~~~l~~  106 (166)
T 3md3_A           73 INWAFQSQ-----------Q------S-----------------------------SSDDTFNLFVGDLNVNVDDETLRN  106 (166)
T ss_dssp             EEECCCCC-----------C------C-----------------------------CCTTCEEEEEESCCTTCCHHHHHH
T ss_pred             EEEcCCCC-----------C------C-----------------------------CCCCCceEEECCCCCCCCHHHHHH
Confidence            98753210           0      0                             012356899999999999999999


Q ss_pred             hhccCCcEeEeeCC
Q psy16116        598 FFVGQQDSFVHKVP  611 (612)
Q Consensus       598 fFs~~gdI~~~kip  611 (612)
                      +|+.||+|..++++
T Consensus       107 ~f~~~G~i~~~~i~  120 (166)
T 3md3_A          107 AFKDFPSYLSGHVM  120 (166)
T ss_dssp             HHTTSTTEEEEEEE
T ss_pred             HHhccCCeeEEEEE
Confidence            99999998877663

>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A

Probab=99.82  E-value=3.5e-20  Score=171.06  Aligned_cols=118  Identities=16%  Similarity=0.244  Sum_probs=101.9

Q ss_pred             ccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEE
Q psy16116        438 QVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIRY  515 (612)
Q Consensus       438 ~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~  515 (612)
                      .++|||+|||+++++++|+++|+.||        .+..|+++.+. +|+++|||||+|.+.++|++|++ +++..++||.
T Consensus         2 ~~~l~v~nlp~~~~~~~l~~~f~~~G--------~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~   73 (167)
T 1fxl_A            2 KTNLIVNYLPQNMTQEEFRSLFGSIG--------EIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKT   73 (167)
T ss_dssp             CSEEEEESCCTTCCHHHHHHHHHTTS--------CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred             cceEEEcCCCCCCCHHHHHHHHHhcC--------CeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCce
Confidence            36799999999999999999999999        45679999987 89999999999999999999997 7999999999


Q ss_pred             EEEEecchHHHHHHhhhhcCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCcccccCCCcccEEEEcCCCccCCHHHH
Q psy16116        516 IELFRSTTAEVQQVLNKTMELPKNNSLTSSNNGLSAQQPMLSHLAQVPVPYLPQHIITSGTRKDCIRLRGLPYEALCILM  595 (612)
Q Consensus       516 IeV~~as~~e~~~~~~~~~~~~~~~~~~~e~~~~s~~~~~~~~~s~~p~~~~~~~~~~~~~~~~~VfVrNLPf~vTeeDL  595 (612)
                      |.|..+....                  .                              .....+|||+|||+++|+++|
T Consensus        74 l~v~~~~~~~------------------~------------------------------~~~~~~l~v~nl~~~~t~~~l  105 (167)
T 1fxl_A           74 IKVSYARPSS------------------A------------------------------SIRDANLYVSGLPKTMTQKEL  105 (167)
T ss_dssp             CEEEECCCCC------------------G------------------------------GGTTCEEEEESCCTTCCHHHH
T ss_pred             EEEEecCCCc------------------c------------------------------cCCCCcEEECCCCCcCCHHHH
Confidence            9997654110                  0                              012357999999999999999


Q ss_pred             HHhhccCCcEeEeeCC
Q psy16116        596 DIFFVGQQDSFVHKVP  611 (612)
Q Consensus       596 kefFs~~gdI~~~kip  611 (612)
                      +++|+.||+|..++++
T Consensus       106 ~~~f~~~G~i~~~~i~  121 (167)
T 1fxl_A          106 EQLFSQYGRIITSRIL  121 (167)
T ss_dssp             HHHHGGGSCEEEEEEE
T ss_pred             HHHHHhcCCEeEEEEE
Confidence            9999999988776653

>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A

Probab=99.82  E-value=3.9e-20  Score=171.51  Aligned_cols=118  Identities=14%  Similarity=0.185  Sum_probs=102.0

Q ss_pred             ccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEE
Q psy16116        438 QVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIRY  515 (612)
Q Consensus       438 ~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~  515 (612)
                      .++|||+|||+++++++|+++|+.||        .+..|+++.+. +|+++|||||+|.+.++|++|++ +++..++||.
T Consensus         3 ~~~l~v~nlp~~~~~~~l~~~f~~~G--------~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~   74 (168)
T 1b7f_A            3 NTNLIVNYLPQDMTDRELYALFRAIG--------PINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKR   74 (168)
T ss_dssp             CSEEEEECCCTTCCHHHHHHHHHTTS--------CEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred             ccEEEEeCCCCCCCHHHHHHHHHhcC--------CeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcE
Confidence            46899999999999999999999999        45679998886 79999999999999999999996 7999999999


Q ss_pred             EEEEecchHHHHHHhhhhcCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCcccccCCCcccEEEEcCCCccCCHHHH
Q psy16116        516 IELFRSTTAEVQQVLNKTMELPKNNSLTSSNNGLSAQQPMLSHLAQVPVPYLPQHIITSGTRKDCIRLRGLPYEALCILM  595 (612)
Q Consensus       516 IeV~~as~~e~~~~~~~~~~~~~~~~~~~e~~~~s~~~~~~~~~s~~p~~~~~~~~~~~~~~~~~VfVrNLPf~vTeeDL  595 (612)
                      |.|..+....                  .                              .....+|||+|||+++|+++|
T Consensus        75 l~v~~~~~~~------------------~------------------------------~~~~~~l~v~nl~~~~t~~~l  106 (168)
T 1b7f_A           75 LKVSYARPGG------------------E------------------------------SIKDTNLYVTNLPRTITDDQL  106 (168)
T ss_dssp             CEEEECCCCS------------------S------------------------------TTTTCEEEEESCCTTCCHHHH
T ss_pred             EEEEecCCCc------------------c------------------------------cCCCCCEEEeCCCCCCCHHHH
Confidence            9998754110                  0                              013468999999999999999


Q ss_pred             HHhhccCCcEeEeeCC
Q psy16116        596 DIFFVGQQDSFVHKVP  611 (612)
Q Consensus       596 kefFs~~gdI~~~kip  611 (612)
                      +++|+.||+|..++++
T Consensus       107 ~~~f~~~G~i~~~~i~  122 (168)
T 1b7f_A          107 DTIFGKYGSIVQKNIL  122 (168)
T ss_dssp             HHHHTSSSCEEEEEEE
T ss_pred             HHhhhcCCcEEEEEEE
Confidence            9999999998777654

>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.82  E-value=4.1e-20  Score=168.40  Aligned_cols=101  Identities=58%  Similarity=0.933  Sum_probs=88.9

Q ss_pred             hhccCCcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCcc
Q psy16116        431 AFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALSKHKES  510 (612)
Q Consensus       431 ~~~~~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~~~~~~  510 (612)
                      .+..+....+|||+||||++|++||++||++||    .|.+.++.|+|++|.+|+++|||||+|.+.++|++||++|++.
T Consensus        16 ~~~~~~~~~~v~V~nLp~~~te~dl~~~F~~~g----~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~~~~~   91 (123)
T 2dha_A           16 QFLSKENQVIVRMRGLPFTATAEEVVAFFGQHC----PITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDL   91 (123)
T ss_dssp             HHHHCCSCCEEEECSCCTTCCHHHHHHHHHTTS----CCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTTTTEE
T ss_pred             hhccCCCCCEEEEeCCCCCCCHHHHHHHHHhhC----CccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCe
Confidence            344455678999999999999999999999998    3421246799999999999999999999999999999999999


Q ss_pred             cCCEEEEEEecchHHHHHHhhhhcC
Q psy16116        511 IGIRYIELFRSTTAEVQQVLNKTME  535 (612)
Q Consensus       511 iggR~IeV~~as~~e~~~~~~~~~~  535 (612)
                      |+||+|+|..++.+++.+.+.+...
T Consensus        92 l~gR~i~V~~a~~~e~~~~~~~~~~  116 (123)
T 2dha_A           92 LGKRYIELFRSTAAEVQQVLNRFSS  116 (123)
T ss_dssp             SSSCEECCEEECHHHHHHHHHHHTT
T ss_pred             eCCeEEEEEECCHHHHHHHHHhccC
Confidence            9999999999999999998887653

>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A

Probab=99.81  E-value=2.5e-20  Score=180.05  Aligned_cols=129  Identities=16%  Similarity=0.086  Sum_probs=102.0

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIR  514 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR  514 (612)
                      ...+|||+|||+++++++|+++|+.||        .+..|+|+.+. +|+++|||||+|.+.++|++||+ +++..++||
T Consensus        27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G--------~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~   98 (216)
T 2qfj_A           27 IMSRVYVGSIYYELGEDTIRQAFAPFG--------PIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGR   98 (216)
T ss_dssp             HHTEEEEECCCTTCCHHHHHHHHGGGS--------CEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-C
T ss_pred             cCCEEEEECCCCCCCHHHHHHHHHhCC--------CEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCe
Confidence            357899999999999999999999999        45679999887 89999999999999999999997 899999999


Q ss_pred             EEEEEecchHHHHHHh-hhhcCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCcccccCCCcccEEEEcCCCccCCHH
Q psy16116        515 YIELFRSTTAEVQQVL-NKTMELPKNNSLTSSNNGLSAQQPMLSHLAQVPVPYLPQHIITSGTRKDCIRLRGLPYEALCI  593 (612)
Q Consensus       515 ~IeV~~as~~e~~~~~-~~~~~~~~~~~~~~e~~~~s~~~~~~~~~s~~p~~~~~~~~~~~~~~~~~VfVrNLPf~vTee  593 (612)
                      .|.|..+......... ....                                      .......+|||+|||+++|++
T Consensus        99 ~l~v~~~~~~~~~~~~~~~~~--------------------------------------~~~~~~~~l~v~nlp~~~t~~  140 (216)
T 2qfj_A           99 NIKVGRPSNIGQAQPIIDQLA--------------------------------------EEARAFNRIYVASVHQDLSDD  140 (216)
T ss_dssp             CCEEECCSCCGGGHHHHHHHH--------------------------------------HHHTTSCEEEEECCCTTCCHH
T ss_pred             eEEEecCCCccccchhhhhhh--------------------------------------cccCCCcEEEEeCCCCcCCHH
Confidence            9999776432211000 0000                                      001234689999999999999


Q ss_pred             HHHHhhccCCcEeEeeCC
Q psy16116        594 LMDIFFVGQQDSFVHKVP  611 (612)
Q Consensus       594 DLkefFs~~gdI~~~kip  611 (612)
                      ||+++|+.||.|..++|+
T Consensus       141 ~l~~~f~~~G~v~~v~i~  158 (216)
T 2qfj_A          141 DIKSVFEAFGKIKSATLA  158 (216)
T ss_dssp             HHHHHHTTSSCEEEEEEE
T ss_pred             HHHHHHhccCCeeEEEEE
Confidence            999999999988877764

>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A

Probab=99.80  E-value=1.9e-19  Score=167.59  Aligned_cols=119  Identities=11%  Similarity=0.117  Sum_probs=97.1

Q ss_pred             ccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCC---CceeEEEEEeCCHHHHHHHHH-hCCcccC-
Q psy16116        438 QVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDG---KATGDAFVLFEKEEEADKALS-KHKESIG-  512 (612)
Q Consensus       438 ~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~G---rskG~AFV~F~s~edA~kAL~-~~~~~ig-  512 (612)
                      .++|||+|||+++++++|+++|+.||        .+.+|+|+.+..+   +++|||||+|.+.++|++|++ +++..+. 
T Consensus         3 ~~~l~V~nLp~~~te~~l~~~F~~~G--------~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~   74 (175)
T 3nmr_A            3 AIKMFVGQVPRTWSEKDLRELFEQYG--------AVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLP   74 (175)
T ss_dssp             CEEEEEESCCTTCCHHHHHHHHHTTS--------CEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCT
T ss_pred             ceEEEEeCCCCCCCHHHHHHHHHhCC--------CEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEcc
Confidence            46899999999999999999999999        4567999998855   899999999999999999996 6876654 


Q ss_pred             --CEEEEEEecchHHHHHHhhhhcCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCcccccCCCcccEEEEcCCCccC
Q psy16116        513 --IRYIELFRSTTAEVQQVLNKTMELPKNNSLTSSNNGLSAQQPMLSHLAQVPVPYLPQHIITSGTRKDCIRLRGLPYEA  590 (612)
Q Consensus       513 --gR~IeV~~as~~e~~~~~~~~~~~~~~~~~~~e~~~~s~~~~~~~~~s~~p~~~~~~~~~~~~~~~~~VfVrNLPf~v  590 (612)
                        ++.+.+..+....           .                                    ......+|||+|||+++
T Consensus        75 ~~~~~~~~~~~~~~~-----------~------------------------------------~~~~~~~l~v~nl~~~~  107 (175)
T 3nmr_A           75 GMHHPIQMKPADSEK-----------N------------------------------------NAVEDRKLFIGMISKKC  107 (175)
T ss_dssp             TCSSCCEEEECGGGC-----------C------------------------------------SCGGGSEEEEESCCTTC
T ss_pred             CCccceEEccccccc-----------c------------------------------------ccCCCCeEEEcCCCCcC
Confidence              4556665432110           0                                    01134689999999999


Q ss_pred             CHHHHHHhhccCCcEeEeeCC
Q psy16116        591 LCILMDIFFVGQQDSFVHKVP  611 (612)
Q Consensus       591 TeeDLkefFs~~gdI~~~kip  611 (612)
                      |+++|+++|+.||+|..++++
T Consensus       108 t~~~l~~~F~~~G~i~~v~~~  128 (175)
T 3nmr_A          108 TENDIRVMFSSFGQIEECRIL  128 (175)
T ss_dssp             CHHHHHHHHGGGSCEEEEEEE
T ss_pred             CHHHHHHHHHhCCCEEEEEEE
Confidence            999999999999998877764

>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A

Probab=99.79  E-value=1.4e-19  Score=169.83  Aligned_cols=118  Identities=12%  Similarity=0.049  Sum_probs=98.1

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCcccCCEEE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALSKHKESIGIRYI  516 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~~~~~~iggR~I  516 (612)
                      ..++|||+|||+++++++|+++|+.+|    .|    .++.+....+|+++|||||+|.+.++|++||++++..++||.|
T Consensus        12 ~~~~l~V~nLp~~~t~~~l~~~f~~~g----~~----~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l   83 (175)
T 1fje_B           12 TPFNLFIGNLNPNKSVAELKVAISELF----AK----NDLAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEI   83 (175)
T ss_dssp             SSEEEEEECCCTTSCHHHHHHHHHHHH----HH----HTCCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEE
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHHhC----Cc----ceEEEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEE
Confidence            567899999999999999999999999    33    2333433457899999999999999999999999999999999


Q ss_pred             EEEecchHHHHHHhhhhcCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCcccccCCCcccEEEEcCCCccCCHHHHH
Q psy16116        517 ELFRSTTAEVQQVLNKTMELPKNNSLTSSNNGLSAQQPMLSHLAQVPVPYLPQHIITSGTRKDCIRLRGLPYEALCILMD  596 (612)
Q Consensus       517 eV~~as~~e~~~~~~~~~~~~~~~~~~~e~~~~s~~~~~~~~~s~~p~~~~~~~~~~~~~~~~~VfVrNLPf~vTeeDLk  596 (612)
                      .|..+..++           .      .                             ......+|||+|||+++|+++|+
T Consensus        84 ~v~~~~~~~-----------~------~-----------------------------~~~~~~~l~v~nlp~~~t~~~l~  117 (175)
T 1fje_B           84 KLEKPKGRD-----------S------K-----------------------------KVRAARTLLAKNLSFNITEDELK  117 (175)
T ss_dssp             EEECCCCSS-----------C------S-----------------------------TTGGGGEEEEESCCSSCCHHHHH
T ss_pred             EEecCCCcc-----------c------c-----------------------------ccccCCEEEEeCCCCCCCHHHHH
Confidence            998754210           0      0                             01135689999999999999999


Q ss_pred             HhhccCCcEeEe
Q psy16116        597 IFFVGQQDSFVH  608 (612)
Q Consensus       597 efFs~~gdI~~~  608 (612)
                      ++|+.||+|.++
T Consensus       118 ~~F~~~g~v~~~  129 (175)
T 1fje_B          118 EVFEDALEIRLV  129 (175)
T ss_dssp             HHCTTCSEEEEE
T ss_pred             HHHHhcCeEEEe
Confidence            999999999876

>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A

Probab=99.77  E-value=3.6e-19  Score=158.77  Aligned_cols=75  Identities=23%  Similarity=0.184  Sum_probs=68.4

Q ss_pred             cEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEEEE
Q psy16116        439 VIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRYIE  517 (612)
Q Consensus       439 ~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~Ie  517 (612)
                      .+|||+|||+++++++|+++|+.||        .+.+|+|+.|. ++++|||||+|.+.++|++||+ +++..|+||.|.
T Consensus         6 ~~lfV~nLp~~~te~~L~~~F~~~G--------~v~~v~i~~d~-~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~   76 (115)
T 4f25_A            6 GNIFIKNLDKSIDNKALYDTFSAFG--------NILSCKVVCDE-NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVF   76 (115)
T ss_dssp             CEEEEESCCTTCCHHHHHHHHGGGS--------CEEEEEEEEET-TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred             CEEEECCCCCCCCHHHHHHHHhccC--------CEEEEEEeecC-CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence            5699999999999999999999999        45679999886 4589999999999999999996 799999999999


Q ss_pred             EEecc
Q psy16116        518 LFRST  522 (612)
Q Consensus       518 V~~as  522 (612)
                      |..+.
T Consensus        77 V~~a~   81 (115)
T 4f25_A           77 VGRFK   81 (115)
T ss_dssp             EEESS
T ss_pred             EEECC
Confidence            98764

>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A

Probab=99.77  E-value=1.1e-19  Score=173.18  Aligned_cols=142  Identities=15%  Similarity=0.140  Sum_probs=97.5

Q ss_pred             ccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCc--eeEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCcccCCEE
Q psy16116        438 QVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGE--EGVLFVKKPDGKATGDAFVLFEKEEEADKALSKHKESIGIRY  515 (612)
Q Consensus       438 ~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v--~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~~~~~~iggR~  515 (612)
                      .++|||+|||+++++++|+++|+.||    .|.+-.  ..-.|.....++++|||||+|.+.++|++||++|+..++||.
T Consensus         4 ~~~l~V~nLp~~~te~~l~~~F~~~g----~i~g~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~Al~l~g~~~~g~~   79 (198)
T 2yh0_A            4 ARRLYVGNIPFGITEEAMMDFFNAQM----RLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQS   79 (198)
T ss_dssp             CCEEEEESCCTTCCHHHHHHHHHHHH----HHHTCCSSSSCSEEEEEEETTTTEEEEEESCSHHHHHHGGGTTEEETTEE
T ss_pred             eeEEEEcCCCCCCCHHHHHHHHHHHH----hhcccccCCCCceEEeEecCCCCEEEEEeCCHHHHHHHHHhcCCEEcCce
Confidence            46899999999999999999999995    221100  000122222467899999999999999999988999999999


Q ss_pred             EEEEecchHHHHHHhhhhcCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCcccccCCCcccEEEEcCCCccCCHHHH
Q psy16116        516 IELFRSTTAEVQQVLNKTMELPKNNSLTSSNNGLSAQQPMLSHLAQVPVPYLPQHIITSGTRKDCIRLRGLPYEALCILM  595 (612)
Q Consensus       516 IeV~~as~~e~~~~~~~~~~~~~~~~~~~e~~~~s~~~~~~~~~s~~p~~~~~~~~~~~~~~~~~VfVrNLPf~vTeeDL  595 (612)
                      |.|..+.....      .   ..  .  .+..  .         ...+.  ...  .......++|||+|||+++|+++|
T Consensus        80 i~v~~~~~~~~------~---~~--~--~~~~--~---------~~~~~--~~~--~~~~~~~~~l~v~nl~~~~~~~~l  131 (198)
T 2yh0_A           80 LKIRRPHDYQP------L---PG--M--SENP--S---------VYVPG--VVS--TVVPDSAHKLFIGGLPNYLNDDQV  131 (198)
T ss_dssp             EEEECCCCCCC------C---CC--S--SSCS--S---------CCCTT--SSC--CCSSCCCCEEEEECCCTTCCHHHH
T ss_pred             EEEeCCCCCCC------C---CC--C--cCCC--c---------CCCCC--Ccc--CCCCCCCCEEEEeCCCCCCCHHHH
Confidence            99987643210      0   00  0  0000  0         00000  000  001235689999999999999999


Q ss_pred             HHhhccCCcEeEeeCC
Q psy16116        596 DIFFVGQQDSFVHKVP  611 (612)
Q Consensus       596 kefFs~~gdI~~~kip  611 (612)
                      +++|+.||+|..++++
T Consensus       132 ~~~f~~~G~v~~~~~~  147 (198)
T 2yh0_A          132 KELLTSFGPLKAFNLV  147 (198)
T ss_dssp             HHHHHTBSCEEEEEEE
T ss_pred             HHHHHHcCCccEEEEe
Confidence            9999999988777654

>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A

Probab=99.77  E-value=2.9e-19  Score=166.60  Aligned_cols=117  Identities=14%  Similarity=0.114  Sum_probs=93.2

Q ss_pred             ccEEEEeCCCCCCCHHHHHHHHhcCCCCcccccc-------CceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCcc
Q psy16116        438 QVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMD-------GEEGVLFVKKPDGKATGDAFVLFEKEEEADKALSKHKES  510 (612)
Q Consensus       438 ~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd-------~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~~~~~~  510 (612)
                      .++|||+|||+++++++|+++|+.+|    .|.+       .+..+.     .++++|||||+|.+.++|++|+++|+..
T Consensus         4 ~~~l~V~nLp~~~t~~~l~~~F~~~g----~~~g~~~~~~~~v~~~~-----~~~~~g~afV~f~~~~~A~~A~~~~~~~   74 (172)
T 2g4b_A            4 ARRLYVGNIPFGITEEAMMDFFNAQM----RLGGLTQAPGNPVLAVQ-----INQDKNFAFLEFRSVDETTQAMAFDGII   74 (172)
T ss_dssp             GGEEEEESCCTTCCHHHHHHHHHHHH----HHTTCCSSSSCSEEEEE-----EETTTTEEEEEESSHHHHHHHGGGTTCE
T ss_pred             ccEEEEcCCCcccCHHHHHHHHHHHh----hhcccccCCCCceeeeE-----ecCCCCEEEEEeCCHHHHHHHHHhCCcE
Confidence            46899999999999999999999994    2211       112233     3567899999999999999999889999


Q ss_pred             cCCEEEEEEecchHHHHHHhhhhcCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCcccccCCCcccEEEEcCCCccC
Q psy16116        511 IGIRYIELFRSTTAEVQQVLNKTMELPKNNSLTSSNNGLSAQQPMLSHLAQVPVPYLPQHIITSGTRKDCIRLRGLPYEA  590 (612)
Q Consensus       511 iggR~IeV~~as~~e~~~~~~~~~~~~~~~~~~~e~~~~s~~~~~~~~~s~~p~~~~~~~~~~~~~~~~~VfVrNLPf~v  590 (612)
                      ++||.|.|..+...                .  .                              .....+|||+|||+++
T Consensus        75 ~~g~~i~v~~~~~~----------------~--~------------------------------~~~~~~l~v~nlp~~~  106 (172)
T 2g4b_A           75 FQGQSLKIRRPHDY----------------Q--P------------------------------LPGAHKLFIGGLPNYL  106 (172)
T ss_dssp             ETTEECEEECCSSC----------------C--C------------------------------CTTTTCEEEECCCTTC
T ss_pred             ecCceeeecCCccc----------------C--C------------------------------CCCCCEEEEEcCCCcC
Confidence            99999999753210                0  0                              0124679999999999


Q ss_pred             CHHHHHHhhccCCcEeEeeCC
Q psy16116        591 LCILMDIFFVGQQDSFVHKVP  611 (612)
Q Consensus       591 TeeDLkefFs~~gdI~~~kip  611 (612)
                      |++||+++|+.||+|..++++
T Consensus       107 t~~~l~~~f~~~G~v~~v~i~  127 (172)
T 2g4b_A          107 NDDQVKELLTSFGPLKAFNLV  127 (172)
T ss_dssp             CHHHHHHHHHTTSCEEEEEEE
T ss_pred             CHHHHHHHHHhcCCceEEEEE
Confidence            999999999999998877664

>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A

Probab=99.76  E-value=1.4e-18  Score=161.16  Aligned_cols=134  Identities=13%  Similarity=0.087  Sum_probs=104.3

Q ss_pred             CCcceEEEEeCCHHHHHHHHH-h-CCCccCceEEEEeccCccchhhccCCCCcchhhhccCCcccEEEEeCCCCCCCHHH
Q psy16116        377 RRNGEAIVRFIDQEHRDMALK-R-HKHHIDKRYIEVTKANGEDFINVAGGNNNEAQAFLTRGAQVIIRMRGLPYECTAKQ  454 (612)
Q Consensus       377 rsrG~AFVeF~S~EdA~kAL~-~-ng~~IggR~IeV~~s~~~e~~~~~g~~~~e~~~~~~~~~~~~VfV~nLP~s~te~d  454 (612)
                      +.+|+++|+|.+.++|++|++ + ++..++| .|.+..+..........................+|||+|||+++++++
T Consensus        11 ~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~   89 (150)
T 2i2y_A           11 TLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKTE   89 (150)
T ss_dssp             SSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSCHH
T ss_pred             cccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHH
Confidence            568999999999999999995 6 8899999 888877654321110000000000001123567899999999999999


Q ss_pred             HHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEEEEEEecch
Q psy16116        455 VIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRYIELFRSTT  523 (612)
Q Consensus       455 LrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~IeV~~as~  523 (612)
                      |+++|+.||        .+..|+|+.+    ++|||||+|.+.++|++||+ +|+..++||.|.|..+..
T Consensus        90 l~~~F~~~G--------~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~  147 (150)
T 2i2y_A           90 LERAFGYYG--------PLRSVWVARN----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNG  147 (150)
T ss_dssp             HHHHHHHHS--------CEEEEEECSS----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCC
T ss_pred             HHHHHHhhC--------CEEEEEEeeC----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCC
Confidence            999999999        4567898866    68999999999999999997 799999999999988753

>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.76  E-value=3.1e-18  Score=153.73  Aligned_cols=94  Identities=38%  Similarity=0.731  Sum_probs=84.1

Q ss_pred             CcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCcccCCEE
Q psy16116        436 GAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALSKHKESIGIRY  515 (612)
Q Consensus       436 ~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~~~~~~iggR~  515 (612)
                      ...++|||+||||++|++||++||+.||    .+ +.+..|+|++|++|+++|||||+|.+.++|++||++|+..|+||+
T Consensus        15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G----~~-~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~   89 (118)
T 2db1_A           15 GEGYVVKLRGLPWSCSIEDVQNFLSDCT----IH-DGVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMGHRY   89 (118)
T ss_dssp             CCCCEEEEESCCTTCCHHHHHHHTTTSC----BT-TGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGGGTTEEETTEE
T ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHHcC----Cc-cCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeE
Confidence            3567899999999999999999999999    21 015679999999999999999999999999999999999999999


Q ss_pred             EEEEecchHHHHHHhhhhc
Q psy16116        516 IELFRSTTAEVQQVLNKTM  534 (612)
Q Consensus       516 IeV~~as~~e~~~~~~~~~  534 (612)
                      |+|..+..+++.+...+..
T Consensus        90 i~V~~a~~~~~~~~~~~~~  108 (118)
T 2db1_A           90 IEVFKSHRTEMDWVLKHSG  108 (118)
T ss_dssp             EEEEEECHHHHHHHHHTTS
T ss_pred             EEEEECCHHHHHHHHHHhC
Confidence            9999999999988777554

>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A

Probab=99.76  E-value=6.1e-18  Score=171.03  Aligned_cols=77  Identities=19%  Similarity=0.192  Sum_probs=68.2

Q ss_pred             cccEEEEeCCCCCCCHHHHH----HHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCccc
Q psy16116        437 AQVIIRMRGLPYECTAKQVI----DFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKAL-SKHKESI  511 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLr----efF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL-~~~~~~i  511 (612)
                      ..++|||+|||+++++++|+    ++|+.||        .+..|+++.  +|+++|||||+|.+.++|++|| .+|+..+
T Consensus         8 ~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G--------~i~~v~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~   77 (282)
T 3pgw_A            8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFG--------QILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPF   77 (282)
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHhccC--------CeEEEEEcC--CCCcceEEEEEECCHHHHHHHHHHhcCCee
Confidence            45789999999999999977    8999999        345677764  7899999999999999999999 5799999


Q ss_pred             CCEEEEEEecch
Q psy16116        512 GIRYIELFRSTT  523 (612)
Q Consensus       512 ggR~IeV~~as~  523 (612)
                      +||.|.|..+..
T Consensus        78 ~g~~l~v~~a~~   89 (282)
T 3pgw_A           78 YDKPMRIQYAKT   89 (282)
T ss_pred             CCcEEEEEEecc
Confidence            999999998854

>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.76  E-value=2.6e-18  Score=153.13  Aligned_cols=86  Identities=21%  Similarity=0.387  Sum_probs=78.2

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCcccCCEEE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALSKHKESIGIRYI  516 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~~~~~~iggR~I  516 (612)
                      ...+|||+||||+++++||++||+.|+         +..|+|++|++|+++|||||+|.++++|++||++|++.|+||+|
T Consensus        15 ~~~~v~V~nLp~~~te~dl~~~F~~~~---------v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i   85 (109)
T 2dnn_A           15 DDLYVSVHGMPFSAMENDVRDFFHGLR---------VDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYV   85 (109)
T ss_dssp             HHHEEEEECCCSSCCHHHHHHHTTTSC---------CCEEEECCCTTCCCCSEEEEECSSHHHHHHHHHTTTEEETTEEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHhccCC---------eeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEE
Confidence            357899999999999999999999986         24699999999999999999999999999999999999999999


Q ss_pred             EEEecchHHHHHHhh
Q psy16116        517 ELFRSTTAEVQQVLN  531 (612)
Q Consensus       517 eV~~as~~e~~~~~~  531 (612)
                      +|..++.+++....+
T Consensus        86 ~V~~a~~~~~~~~~g  100 (109)
T 2dnn_A           86 EVSPATERQWVAAGG  100 (109)
T ss_dssp             EEEECCHHHHHHHHC
T ss_pred             EEEECCccchhhcCC
Confidence            999999888766443

>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A

Probab=99.75  E-value=1.4e-17  Score=164.61  Aligned_cols=149  Identities=13%  Similarity=0.097  Sum_probs=102.4

Q ss_pred             CcccEEEEeCCCC-CCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCC
Q psy16116        436 GAQVIIRMRGLPY-ECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGI  513 (612)
Q Consensus       436 ~~~~~VfV~nLP~-s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~igg  513 (612)
                      ....+|||+|||+ ++++++|+++|+.||        .+..|+|+.+.    +|||||+|.+.++|++||+ +++..++|
T Consensus        32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G--------~i~~v~i~~~~----~g~afV~F~~~~~A~~Ai~~l~g~~~~g   99 (229)
T 2adc_A           32 AGNSVLLVSNLNPERVTPQSLFILFGVYG--------DVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHG   99 (229)
T ss_dssp             CCCSEEEEESCCTTTCCHHHHHHHHHHHT--------CEEEEEECCTT----SCCEEEEESCHHHHHHHHHHHTTCBCSS
T ss_pred             CCCCEEEEeCCCcccCCHHHHHHHHHhCC--------CeEEEEEEECC----CCEEEEEECCHHHHHHHHHHhCCCeECC
Confidence            3567899999999 999999999999999        45678988765    7899999999999999996 89999999


Q ss_pred             EEEEEEecchHHHHHHhhhhcCCCCCCCCCCCCCCCCCcccccc-cccCCCCCCCCcccccCCCcccEEEEcCCCccCCH
Q psy16116        514 RYIELFRSTTAEVQQVLNKTMELPKNNSLTSSNNGLSAQQPMLS-HLAQVPVPYLPQHIITSGTRKDCIRLRGLPYEALC  592 (612)
Q Consensus       514 R~IeV~~as~~e~~~~~~~~~~~~~~~~~~~e~~~~s~~~~~~~-~~s~~p~~~~~~~~~~~~~~~~~VfVrNLPf~vTe  592 (612)
                      |.|.|..+.......        ++......+     ....... ...+... ..............+|||+|||+++|+
T Consensus       100 ~~l~v~~a~~~~~~~--------~~~~~~~~~-----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~V~nlp~~~t~  165 (229)
T 2adc_A          100 KPIRITLSKHQNVQL--------PREGQEDQG-----LTKDYGNSPLHRFKK-PGSKNFQNIFPPSATLHLSNIPPSVSE  165 (229)
T ss_dssp             SBCEEECCSCCCCCC--------CCSSSSTTT-----TEEECTTCSSCCCCS-TTSGGGTTCCCSCSEEEEECCCTTCCH
T ss_pred             eEEEEEEecCccccC--------ccccccccc-----cccccccCcccccCC-ccccccccCCCCCCEEEEeCCCccCCH
Confidence            999998875321100        000000000     0000000 0000000 000000001234689999999999999


Q ss_pred             HHHHHhhccCC-cEeEeeC
Q psy16116        593 ILMDIFFVGQQ-DSFVHKV  610 (612)
Q Consensus       593 eDLkefFs~~g-dI~~~ki  610 (612)
                      ++|+++|+.|| +|..+++
T Consensus       166 ~~l~~~f~~~G~~i~~v~i  184 (229)
T 2adc_A          166 EDLKVLFSSNGGVVKGFKF  184 (229)
T ss_dssp             HHHHHHHHTTSCCEEEEEE
T ss_pred             HHHHHHHHHcCCCeeEEEE
Confidence            99999999999 8887776

>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A

Probab=99.75  E-value=3.3e-18  Score=158.38  Aligned_cols=92  Identities=37%  Similarity=0.737  Sum_probs=82.6

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCcccCCEEE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALSKHKESIGIRYI  516 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~~~~~~iggR~I  516 (612)
                      ...+|||+||||++|++||++||+.||    .| +.+..|+|++|++|+++|||||+|.+.++|++||++|+..|+||+|
T Consensus        43 ~~~~lfVgnLp~~~te~dL~~~F~~~G----~v-~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i  117 (136)
T 2hgl_A           43 EGFVVKLRGLPWSCSVEDVQNFLSDCT----IH-DGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMGHRYI  117 (136)
T ss_dssp             TTCEEEEESCCTTCCHHHHHHHTTTCC----CS-SSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHTTTEEESSSSEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHhC----Cc-CceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCEECCEEE
Confidence            457899999999999999999999999    21 0146799999999999999999999999999999999999999999


Q ss_pred             EEEecchHHHHHHhhhh
Q psy16116        517 ELFRSTTAEVQQVLNKT  533 (612)
Q Consensus       517 eV~~as~~e~~~~~~~~  533 (612)
                      +|..++.+++.+.+++.
T Consensus       118 ~V~~a~~~e~~~~~~~~  134 (136)
T 2hgl_A          118 EVFKSHRTEMDWVLKHS  134 (136)
T ss_dssp             EEEECCHHHHHHHHTTS
T ss_pred             EEEECChHHHHHHHhhc
Confidence            99999999998877643

>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A

Probab=99.74  E-value=5.1e-18  Score=166.52  Aligned_cols=147  Identities=14%  Similarity=0.099  Sum_probs=99.1

Q ss_pred             cccEEEEeCCC-CCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCE
Q psy16116        437 AQVIIRMRGLP-YECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIR  514 (612)
Q Consensus       437 ~~~~VfV~nLP-~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR  514 (612)
                      .+.+|||+||| +++++++|+++|+.||        .+.+|+|+.+    ++|||||+|.+.++|++||+ +|+..++||
T Consensus         3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G--------~v~~v~i~~~----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~   70 (205)
T 3tyt_A            3 DSPVLMVYGLDQSKMNCDRVFNVFCLYG--------NVEKVKFMKS----KPGAAMVEMADGYAVDRAITHLNNNFMFGQ   70 (205)
T ss_dssp             CCSEEEEECCCTTTCCHHHHHHHHTTTS--------CEEEEEECTT----STTCEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred             CCCEEEEeCCCcccCCHHHHHHHHHhcC--------CeEEEEEecC----CCCEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence            35689999999 8999999999999999        4567888754    47999999999999999996 899999999


Q ss_pred             EEEEEecchHHHHHHhhhhcCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCc----ccccCCCcccEEEEcCCCccC
Q psy16116        515 YIELFRSTTAEVQQVLNKTMELPKNNSLTSSNNGLSAQQPMLSHLAQVPVPYLPQ----HIITSGTRKDCIRLRGLPYEA  590 (612)
Q Consensus       515 ~IeV~~as~~e~~~~~~~~~~~~~~~~~~~e~~~~s~~~~~~~~~s~~p~~~~~~----~~~~~~~~~~~VfVrNLPf~v  590 (612)
                      .|.|..+..+...         ++... ..+..+.+     .......+...+..    ..........+|||+|||+++
T Consensus        71 ~l~v~~s~~~~~~---------p~~~~-~~~~~~~~-----~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~  135 (205)
T 3tyt_A           71 KMNVCVSKQPAIM---------PGQSY-GLEDGSCS-----YKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEV  135 (205)
T ss_dssp             ECEEEECSCSCCC---------CCSCC-BCTTSCBS-----EEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTC
T ss_pred             eEEEEEccCCccC---------CCccc-ccccCCcc-----ccccCCCccccccCcccccccccCCCcceEEEeCCCCCC
Confidence            9999987533210         00000 00000000     00000000000000    000001245689999999999


Q ss_pred             CHHHHHHhhccCCcE--eEeeC
Q psy16116        591 LCILMDIFFVGQQDS--FVHKV  610 (612)
Q Consensus       591 TeeDLkefFs~~gdI--~~~ki  610 (612)
                      |++||+++|+.||.|  ..+++
T Consensus       136 t~~~L~~~F~~~G~v~~~~v~~  157 (205)
T 3tyt_A          136 TEENFFEICDELGVKRPTSVKV  157 (205)
T ss_dssp             CHHHHHHHHHHHTCCCCSEEEE
T ss_pred             CHHHHHHHHHhcCCcceEEEEE
Confidence            999999999999987  44443

>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1

Probab=99.74  E-value=1.4e-17  Score=159.69  Aligned_cols=147  Identities=14%  Similarity=0.143  Sum_probs=100.3

Q ss_pred             ccEEEEeCCCC-CCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEE
Q psy16116        438 QVIIRMRGLPY-ECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRY  515 (612)
Q Consensus       438 ~~~VfV~nLP~-s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~  515 (612)
                      +.+|||+|||+ ++++++|+++|+.||        .+..|+++.+.    +|||||+|.+.++|++|++ +++..++||.
T Consensus         3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G--------~i~~v~i~~~~----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~   70 (198)
T 1qm9_A            3 NSVLLVSNLNPERVTPQSLFILFGVYG--------DVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHGKP   70 (198)
T ss_dssp             CCEEEEECCCSSSCCHHHHHHHHHTTC--------CCSEEECSTTC----SSCCEEECTTTHHHHHHHHHHTTCCCSSCC
T ss_pred             CcEEEEeCCCcccCCHHHHHHHHHhcC--------CEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCeecCeE
Confidence            36799999999 999999999999999        34568888664    7899999999999999997 8999999999


Q ss_pred             EEEEecchHHHHHHhhhhcCCCCCCCCCCCC-CCCCCcccccccccCCCCCCCCcccccCCCcccEEEEcCCCccCCHHH
Q psy16116        516 IELFRSTTAEVQQVLNKTMELPKNNSLTSSN-NGLSAQQPMLSHLAQVPVPYLPQHIITSGTRKDCIRLRGLPYEALCIL  594 (612)
Q Consensus       516 IeV~~as~~e~~~~~~~~~~~~~~~~~~~e~-~~~s~~~~~~~~~s~~p~~~~~~~~~~~~~~~~~VfVrNLPf~vTeeD  594 (612)
                      |.|..+......        .++......+. .+.+.  ....+.. .+.   ............+|||+|||+++|+++
T Consensus        71 l~v~~a~~~~~~--------~~~~~~~~~~~~~~~~~--~~~~r~~-~~~---~~~~~~~~~~~~~l~v~nl~~~~~~~~  136 (198)
T 1qm9_A           71 IRITLSKHQNVQ--------LPREGQEDQGLTKDYGN--SPLHRFK-KPG---SKNFQNIFPPSATLHLSNIPPSVSEED  136 (198)
T ss_dssp             CEEEECCCCSCC--------CSSSSSSSSSCEEESSC--CCTTSSS-SCC---CCCCSCCCCCCCEEEECCCCTTCCHHH
T ss_pred             EEEEEecCCCcC--------CCCcCCccccccccccC--Cchhhcc-Ccc---ccccccCCCCccEEEEeCCCCCCCHHH
Confidence            999987543210        00000000000 00000  0000000 000   000000123468999999999999999


Q ss_pred             HHHhhccCC-cEeEeeC
Q psy16116        595 MDIFFVGQQ-DSFVHKV  610 (612)
Q Consensus       595 LkefFs~~g-dI~~~ki  610 (612)
                      |+++|+.|| .|..+++
T Consensus       137 l~~~f~~~G~~v~~v~i  153 (198)
T 1qm9_A          137 LKVLFSSNGGVVKGFKF  153 (198)
T ss_dssp             HHHHHHHTTSCCCEEEE
T ss_pred             HHHHHHHcCCCceEEEE
Confidence            999999999 8877665

>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}

Probab=99.74  E-value=2.7e-18  Score=151.09  Aligned_cols=93  Identities=34%  Similarity=0.703  Sum_probs=83.1

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCcccCCEEE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALSKHKESIGIRYI  516 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~~~~~~iggR~I  516 (612)
                      ..++|||+||||+++++||++||+.||    .+ +++..|+|+.|++|+++|||||+|.+.++|++||++|+..|+||+|
T Consensus        10 ~~~~l~V~nLp~~~te~~l~~~F~~~g----~~-~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i   84 (107)
T 2lmi_A           10 DVFLIRAQGLPWSCTMEDVLNFFSDCR----IR-NGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYV   84 (107)
T ss_dssp             SCCEEEEECCCSSCCSHHHHHHTTTSC----BT-TTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCC
T ss_pred             CccEEEEeCCCCCCCHHHHHHHHHhcC----Cc-CCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCcceeCCeEE
Confidence            567899999999999999999999998    21 0146799999989999999999999999999999999999999999


Q ss_pred             EEEecchHHHHHHhhhhc
Q psy16116        517 ELFRSTTAEVQQVLNKTM  534 (612)
Q Consensus       517 eV~~as~~e~~~~~~~~~  534 (612)
                      +|..++.+++.+.+++..
T Consensus        85 ~V~~a~~~~~~~~~~~~~  102 (107)
T 2lmi_A           85 EVYEINNEDVDALMKSLQ  102 (107)
T ss_dssp             CCEECCHHHHHHHHHTTC
T ss_pred             EEEECCHHHHHHHHHhhc
Confidence            999999999888776543

>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B

Probab=99.72  E-value=1.5e-17  Score=167.68  Aligned_cols=108  Identities=16%  Similarity=0.129  Sum_probs=95.0

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRY  515 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~  515 (612)
                      ..++|||+|||+++|+++|+++|+.||        .+..|.+.     +++|||||+|.+.++|++|++ +|+..++||.
T Consensus        21 ~~~~l~V~nLp~~~te~~l~~~F~~~G--------~i~~v~i~-----~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~   87 (261)
T 3sde_A           21 QRCRLFVGNLPTDITEEDFKRLFERYG--------EPSEVFIN-----RDRGFGFIRLESRTLAEIAKAELDGTILKSRP   87 (261)
T ss_dssp             GGGEEEEESCCTTCCHHHHHHHTGGGC--------CCSEEEEE-----TTTTEEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHhcC--------CEEEEEEe-----CCCcEEEEEECCHHHHHHHHHHcCCcEECCce
Confidence            457899999999999999999999999        34567774     558999999999999999997 8999999999


Q ss_pred             EEEEecchHHHHHHhhhhcCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCcccccCCCcccEEEEcCCCccCCHHHH
Q psy16116        516 IELFRSTTAEVQQVLNKTMELPKNNSLTSSNNGLSAQQPMLSHLAQVPVPYLPQHIITSGTRKDCIRLRGLPYEALCILM  595 (612)
Q Consensus       516 IeV~~as~~e~~~~~~~~~~~~~~~~~~~e~~~~s~~~~~~~~~s~~p~~~~~~~~~~~~~~~~~VfVrNLPf~vTeeDL  595 (612)
                      |.|..+.                                                      ...+|||+|||+++|+++|
T Consensus        88 l~v~~a~------------------------------------------------------~~~~l~v~nl~~~~t~~~l  113 (261)
T 3sde_A           88 LRIRFAT------------------------------------------------------HGAALTVKNLSPVVSNELL  113 (261)
T ss_dssp             CEEEECC------------------------------------------------------CSSEEEEESCCTTCCHHHH
T ss_pred             eEeeecc------------------------------------------------------cCCcccccCCCCCCCHHHH
Confidence            9997642                                                      1247999999999999999


Q ss_pred             HHhhccCCcEeEeeCC
Q psy16116        596 DIFFVGQQDSFVHKVP  611 (612)
Q Consensus       596 kefFs~~gdI~~~kip  611 (612)
                      +++|+.||+|..++|+
T Consensus       114 ~~~F~~~G~i~~v~i~  129 (261)
T 3sde_A          114 EQAFSQFGPVEKAVVV  129 (261)
T ss_dssp             HHHHGGGSCEEEEEEE
T ss_pred             HHHHHhcCCeEEEEee
Confidence            9999999999877764

>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.71  E-value=4.8e-18  Score=148.68  Aligned_cols=83  Identities=45%  Similarity=0.805  Sum_probs=74.7

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCcccCCEEE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALSKHKESIGIRYI  516 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~~~~~~iggR~I  516 (612)
                      ...+|||+|||++++++||++||+.||    .|   .+.|+|+.+.+|+++|||||+|.+.++|++||++|+..|+||+|
T Consensus        14 ~~~~l~V~nLp~~~te~~l~~~F~~~G----~v---~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i   86 (104)
T 1wg5_A           14 NDGFVRLRGLPFGCSKEEIVQFFSGLE----IV---PNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYI   86 (104)
T ss_dssp             CCCEEEEESCCTTCCHHHHHHHTTTCC----EE---EEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcC----Cc---ceeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEE
Confidence            457899999999999999999999999    33   12488888989999999999999999999999889999999999


Q ss_pred             EEEecchHHH
Q psy16116        517 ELFRSTTAEV  526 (612)
Q Consensus       517 eV~~as~~e~  526 (612)
                      +|..++.+++
T Consensus        87 ~v~~~~~~~~   96 (104)
T 1wg5_A           87 EIFKSSRAEV   96 (104)
T ss_dssp             EEEEECTTTS
T ss_pred             EEEECCHHHH
Confidence            9999887654

>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.70  E-value=4.5e-17  Score=144.79  Aligned_cols=87  Identities=22%  Similarity=0.384  Sum_probs=79.8

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCc-eeEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCcccCCEE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGE-EGVLFVKKPDGKATGDAFVLFEKEEEADKALSKHKESIGIRY  515 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v-~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~~~~~~iggR~  515 (612)
                      ..++|||+|||++++++||++||+.||        .+ ..|+|+.|.+|+++|||||+|.+.++|++||++|+..|+||.
T Consensus        14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g--------~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~   85 (114)
T 2cpy_A           14 AKVCAHITNIPFSITKMDVLQFLEGIP--------VDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGRE   85 (114)
T ss_dssp             CCCEEEEESCCTTSCHHHHHHHTTTSC--------CCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGGCSEEETTEE
T ss_pred             CccEEEEeCcCCcCCHHHHHHHHHhCC--------CcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCCCccCCeE
Confidence            457899999999999999999999999        23 569999999999999999999999999999988999999999


Q ss_pred             EEEEecchHHHHHHhh
Q psy16116        516 IELFRSTTAEVQQVLN  531 (612)
Q Consensus       516 IeV~~as~~e~~~~~~  531 (612)
                      |+|..+..+++.....
T Consensus        86 i~v~~a~~~~~~~~~~  101 (114)
T 2cpy_A           86 AFVHVVTLEDMREIEK  101 (114)
T ss_dssp             EEEEEECHHHHHHHHH
T ss_pred             EEEEECCHHHHHHHHh
Confidence            9999999988876554

>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A

Probab=99.69  E-value=1.5e-17  Score=152.18  Aligned_cols=84  Identities=45%  Similarity=0.839  Sum_probs=76.1

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCcccCCEEE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALSKHKESIGIRYI  516 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~~~~~~iggR~I  516 (612)
                      ...+|||+||||++|++||++||+.|+|     +  .+.|+|++|++|+++|||||+|.+.++|++||++++..|+||+|
T Consensus        41 ~~~~lfVgnLp~~~te~dL~~~F~~~~i-----~--~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I  113 (126)
T 2hgm_A           41 NDGFVRLRGLPFGCTKEEIVQFFSGLEI-----V--PNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYI  113 (126)
T ss_dssp             SCCEEEEECCCTTCCHHHHHHHTTTSCE-----E--EEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHhcCCc-----e--eeEEEEEECCCCCCceEEEEEECCHHHHHHHHHHCCCEECCEEE
Confidence            4678999999999999999999999972     1  12789999989999999999999999999999999999999999


Q ss_pred             EEEecchHHHH
Q psy16116        517 ELFRSTTAEVQ  527 (612)
Q Consensus       517 eV~~as~~e~~  527 (612)
                      +|..++.+|+.
T Consensus       114 ~V~~a~~~e~~  124 (126)
T 2hgm_A          114 EVFKSSQEEVR  124 (126)
T ss_dssp             CCEEECHHHHC
T ss_pred             EEEECCHHHhh
Confidence            99999988763

>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}

Probab=99.69  E-value=9.1e-17  Score=140.05  Aligned_cols=79  Identities=15%  Similarity=0.251  Sum_probs=72.1

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIR  514 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR  514 (612)
                      .+.+|||+|||+++|+++|+++|+.||        .+.+|+|+.|+ +|+++|||||+|.+.++|++|++ +|+..++||
T Consensus        18 ~gt~lfV~nLp~~~te~~L~~~F~~~G--------~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr   89 (99)
T 4fxv_A           18 QGTNLIVNYLPQNMTQDELRSLFSSIG--------EVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSK   89 (99)
T ss_dssp             CCSEEEEESCCTTCCHHHHHHHHHTTS--------CEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcC--------CEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCE
Confidence            346799999999999999999999999        45779999987 69999999999999999999996 799999999


Q ss_pred             EEEEEecch
Q psy16116        515 YIELFRSTT  523 (612)
Q Consensus       515 ~IeV~~as~  523 (612)
                      .|.|..+.+
T Consensus        90 ~l~V~~AkP   98 (99)
T 4fxv_A           90 TIKVSYARP   98 (99)
T ss_dssp             ECEEEECCB
T ss_pred             EEEEEEeeC
Confidence            999988753

>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.69  E-value=1.6e-17  Score=145.58  Aligned_cols=78  Identities=37%  Similarity=0.601  Sum_probs=72.1

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCcccCCEEE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALSKHKESIGIRYI  516 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~~~~~~iggR~I  516 (612)
                      ..++|||+||||+++++||++||+.||+        + .|+|++|++|+++|||||+|.+.++|++||++|+..|+||.|
T Consensus        14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~--------~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i   84 (102)
T 1wez_A           14 TGHCVHMRGLPYRATENDIYNFFSPLNP--------M-RVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYV   84 (102)
T ss_dssp             SSCEEEEESCCTTCCHHHHHHSSCSCCC--------S-EEEEEESSSSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHcCc--------e-EEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEE
Confidence            4578999999999999999999999992        2 689999999999999999999999999999999999999999


Q ss_pred             EEEecch
Q psy16116        517 ELFRSTT  523 (612)
Q Consensus       517 eV~~as~  523 (612)
                      +|..++.
T Consensus        85 ~V~~~~~   91 (102)
T 1wez_A           85 ELFLNST   91 (102)
T ss_dssp             EEEEECC
T ss_pred             EEEECCC
Confidence            9998763

>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.66  E-value=1e-16  Score=144.30  Aligned_cols=91  Identities=33%  Similarity=0.589  Sum_probs=78.8

Q ss_pred             CcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCcccCCEE
Q psy16116        436 GAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALSKHKESIGIRY  515 (612)
Q Consensus       436 ~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~~~~~~iggR~  515 (612)
                      ...++|||+|||++++++||++||+.||    .|.   ..+.+..+.+|+++|||||+|.+.++|++||++|+..|+||.
T Consensus        23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G----~v~---~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~   95 (124)
T 1wel_A           23 EAGFCVYLKGLPFEAENKHVIDFFKKLD----IVE---DSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRF   95 (124)
T ss_dssp             CCCCEEEEECCCTTCCHHHHHHHSCSSC----BCT---TTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSC
T ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHhcC----Ccc---ceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcE
Confidence            3568999999999999999999999999    332   125556667999999999999999999999999999999999


Q ss_pred             EEEEecchHHHHHHhhhh
Q psy16116        516 IELFRSTTAEVQQVLNKT  533 (612)
Q Consensus       516 IeV~~as~~e~~~~~~~~  533 (612)
                      |+|..+..+++...+...
T Consensus        96 i~V~~a~~~~~~~~~~~~  113 (124)
T 1wel_A           96 IQVHPITKKGMLEKIDMI  113 (124)
T ss_dssp             BEEEEECHHHHHHHHHHH
T ss_pred             EEEEECCHHHHHHHHHHH
Confidence            999999999987655543

>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}

Probab=99.65  E-value=6.3e-16  Score=137.44  Aligned_cols=81  Identities=19%  Similarity=0.113  Sum_probs=73.8

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIR  514 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR  514 (612)
                      ...+|||+|||+++++++|+++|+.||        .+..|+|++|. +|+++|||||+|.+.++|++||+ +|+..++||
T Consensus         5 p~~~lfV~nL~~~~te~~L~~~F~~~G--------~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr   76 (110)
T 3s8s_A            5 PLKEVTFARLNDNVRETFLKDMCRKYG--------EVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGN   76 (110)
T ss_dssp             CCCEEEEESCCTTCCHHHHHHHHTTTS--------CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred             CCcEEEEECCCCCCCHHHHHHHHHhcC--------CeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence            346899999999999999999999999        45679999997 59999999999999999999996 799999999


Q ss_pred             EEEEEecchHH
Q psy16116        515 YIELFRSTTAE  525 (612)
Q Consensus       515 ~IeV~~as~~e  525 (612)
                      .|.|..+...+
T Consensus        77 ~i~V~~a~~~~   87 (110)
T 3s8s_A           77 IIHAQLDIKGQ   87 (110)
T ss_dssp             ECEEEECSTTH
T ss_pred             EEEEEECCCCc
Confidence            99999996544

>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A

Probab=99.65  E-value=7e-16  Score=129.62  Aligned_cols=77  Identities=19%  Similarity=0.361  Sum_probs=71.1

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHHhCCcccCCEE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALSKHKESIGIRY  515 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~~~~~~iggR~  515 (612)
                      ...+|||+|||+++++++|+++|+.||        .+..|+++.++ +|+++|||||+|.+.++|++||++++..++||.
T Consensus        10 ~~~~l~V~nlp~~~t~~~l~~~F~~~G--------~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~   81 (87)
T 3s7r_A           10 DAGKMFVGGLSWDTSKKDLKDYFTKFG--------EVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRV   81 (87)
T ss_dssp             CTTEEEEECCCTTCCHHHHHHHHTTTS--------CEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhCC--------CEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEE
Confidence            457899999999999999999999999        45779999886 699999999999999999999999999999999


Q ss_pred             EEEEec
Q psy16116        516 IELFRS  521 (612)
Q Consensus       516 IeV~~a  521 (612)
                      |+|..+
T Consensus        82 i~v~~A   87 (87)
T 3s7r_A           82 IDPKKA   87 (87)
T ss_dssp             EEEEEC
T ss_pred             EEEEeC
Confidence            999864

>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}

Probab=99.64  E-value=1.5e-16  Score=136.31  Aligned_cols=77  Identities=21%  Similarity=0.295  Sum_probs=68.2

Q ss_pred             cEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-h-CCcccCCEE
Q psy16116        439 VIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-K-HKESIGIRY  515 (612)
Q Consensus       439 ~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~-~~~~iggR~  515 (612)
                      .+|||+|||+++||+||+++|+.||.       .+.+|+|++|+ +|+++|||||+|.+.++|++||+ + ++..++||.
T Consensus         2 ~~i~v~nLp~~~te~~l~~~F~~~G~-------~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~   74 (91)
T 2lxi_A            2 NIVMLRMLPQAATEDDIRGQLQSHGV-------QAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQK   74 (91)
T ss_dssp             CEEEEETCCSSCCHHHHHHHHHHHTC-------CCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEE
T ss_pred             CEEEEeCCCCCCCHHHHHHHHHHhCC-------EeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEE
Confidence            57999999999999999999999992       24568898886 69999999999999999999997 4 556799999


Q ss_pred             EEEEecc
Q psy16116        516 IELFRST  522 (612)
Q Consensus       516 IeV~~as  522 (612)
                      |.|..+.
T Consensus        75 i~V~~a~   81 (91)
T 2lxi_A           75 VSMHYSD   81 (91)
T ss_dssp             EEEECCC
T ss_pred             EEEEEcC
Confidence            9998765

>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.64  E-value=7e-16  Score=130.87  Aligned_cols=78  Identities=35%  Similarity=0.613  Sum_probs=71.8

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCcccCCEEE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALSKHKESIGIRYI  516 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~~~~~~iggR~I  516 (612)
                      ..++|||+|||++++++||+++|+.|+     |    ..|+|+.+.+|+++|||||+|.+.++|++||++|+..|+||.|
T Consensus         9 ~~~~l~v~nLp~~~t~~~l~~~F~~~~-----i----~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i   79 (91)
T 2dgw_A            9 TCHTVKLRGAPFNVTEKNVMEFLAPLK-----P----VAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYI   79 (91)
T ss_dssp             CCCEEEEECCCSSCCHHHHHHHHTTSC-----C----SEEEEEECTTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEE
T ss_pred             CccEEEEECCCCCCCHHHHHHHHhhCC-----c----eEEEEEECCCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEE
Confidence            457899999999999999999999985     2    4689999989999999999999999999999999999999999


Q ss_pred             EEEecch
Q psy16116        517 ELFRSTT  523 (612)
Q Consensus       517 eV~~as~  523 (612)
                      +|..+..
T Consensus        80 ~v~~a~~   86 (91)
T 2dgw_A           80 EVFREKS   86 (91)
T ss_dssp             EEEEESS
T ss_pred             EEEECCc
Confidence            9998753

>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}

Probab=99.64  E-value=2.7e-16  Score=136.72  Aligned_cols=79  Identities=14%  Similarity=0.166  Sum_probs=69.8

Q ss_pred             ccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCc----cc
Q psy16116        438 QVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKE----SI  511 (612)
Q Consensus       438 ~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~----~i  511 (612)
                      -.+|||+|||+++|+++|+++|+.||    .|  .+..|++++|+ +|++||||||+|.+.++|++||+ +|+.    .+
T Consensus         9 m~tlfV~nL~~~~tee~L~~~F~~~G----~i--~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i   82 (95)
T 2lkz_A            9 MDTIILRNIAPHTVVDSIMTALSPYA----SL--AVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKI   82 (95)
T ss_dssp             CCEEEEESCCTTCCHHHHHHHSTTTC----CC--CGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEE
T ss_pred             cCEEEEeCCCCcCCHHHHHHHHHhhC----Cc--cEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceE
Confidence            35799999999999999999999999    33  35679999987 69999999999999999999996 5665    59


Q ss_pred             CCEEEEEEecc
Q psy16116        512 GIRYIELFRST  522 (612)
Q Consensus       512 ggR~IeV~~as  522 (612)
                      +||.|.|..+.
T Consensus        83 ~Gr~i~V~~Ak   93 (95)
T 2lkz_A           83 DGKTIGVDFAK   93 (95)
T ss_dssp             TTEEEEEEECC
T ss_pred             CCEEEEEEEcc
Confidence            99999999874

>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.63  E-value=4.8e-16  Score=136.77  Aligned_cols=79  Identities=14%  Similarity=0.237  Sum_probs=72.5

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCcccCCEEE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALSKHKESIGIRYI  516 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~~~~~~iggR~I  516 (612)
                      ...+|||+|||+++|+++|+++|+.||        .+.+|+|+.|.+|+++|||||+|.+.++|++||++++..++||.|
T Consensus        10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G--------~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l   81 (103)
T 1s79_A           10 KNRSVYIKGFPTDATLDDIKEWLEDKG--------QVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDL   81 (103)
T ss_dssp             GGGCEEEECCCTTCCHHHHHHHHHTSS--------CEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTC
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHhhcC--------CEEEEEEEECCCCCCccEEEEEECCHHHHHHHHHcCCCEECCEEE
Confidence            346799999999999999999999999        456799999988999999999999999999999999999999999


Q ss_pred             EEEecch
Q psy16116        517 ELFRSTT  523 (612)
Q Consensus       517 eV~~as~  523 (612)
                      .|..+..
T Consensus        82 ~V~~~~~   88 (103)
T 1s79_A           82 LILFKDD   88 (103)
T ss_dssp             EEEEHHH
T ss_pred             EEEEchH
Confidence            9987543

>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A

Probab=99.63  E-value=4.8e-17  Score=151.15  Aligned_cols=80  Identities=39%  Similarity=0.599  Sum_probs=73.0

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCcccCCEEE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALSKHKESIGIRYI  516 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~~~~~~iggR~I  516 (612)
                      ..++|||+||||++||+||++||+.||+         ..|+|++|++|+++|||||+|.+.++|++||++|+..|+||+|
T Consensus        45 ~~~~lfV~nLp~~~te~dL~~~F~~~Gi---------~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i  115 (139)
T 2hgn_A           45 TGHCVHMRGLPYKATENDIYNFFSPLNP---------VRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYI  115 (139)
T ss_dssp             CCCCEECCSCCTTCCHHHHHHHHCSCCC---------SEEECCCSSSSCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCC---------eEEEEEECCCCCCceEEEEEeCCHHHHHHHHhhCCCEECCEEE
Confidence            4567999999999999999999999993         2589999999999999999999999999999889999999999


Q ss_pred             EEEecchHH
Q psy16116        517 ELFRSTTAE  525 (612)
Q Consensus       517 eV~~as~~e  525 (612)
                      +|..++..+
T Consensus       116 ~V~~a~~~~  124 (139)
T 2hgn_A          116 ELFLNSTTG  124 (139)
T ss_dssp             CCEECCCSC
T ss_pred             EEEECCCCC
Confidence            999887544

>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}

Probab=99.63  E-value=1.5e-15  Score=127.20  Aligned_cols=79  Identities=23%  Similarity=0.212  Sum_probs=71.7

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIR  514 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR  514 (612)
                      ...+|||+|||++++++||+++|+.||        .+..|+++.+. +|+++|||||+|.+.++|++|++ +|+..++||
T Consensus         5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G--------~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~   76 (87)
T 3bs9_A            5 SHFHVFVGDLSPEITTAAIAAAFAPFG--------RISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGR   76 (87)
T ss_dssp             -CEEEEEESCCTTCCHHHHHHHHGGGS--------CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred             CceEEEEeCCCCCCCHHHHHHHHHhcC--------CEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence            457899999999999999999999999        45679999986 89999999999999999999997 799999999


Q ss_pred             EEEEEecch
Q psy16116        515 YIELFRSTT  523 (612)
Q Consensus       515 ~IeV~~as~  523 (612)
                      .|.|..+..
T Consensus        77 ~l~v~~a~~   85 (87)
T 3bs9_A           77 QIRTNWATR   85 (87)
T ss_dssp             ECEEEEEC-
T ss_pred             EEEEEecCC
Confidence            999998764

>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0

Probab=99.63  E-value=1.2e-15  Score=126.80  Aligned_cols=77  Identities=13%  Similarity=0.168  Sum_probs=71.1

Q ss_pred             cEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEEE
Q psy16116        439 VIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIRYI  516 (612)
Q Consensus       439 ~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~I  516 (612)
                      ++|||+|||+++++++|+++|+.||        .+..++++.+. +|+++|||||+|.+.++|++|++ +|+..++||.|
T Consensus         2 ~~l~V~nlp~~~t~~~l~~~f~~~G--------~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l   73 (83)
T 3md1_A            2 FNLFVGDLNVNVDDETLRNAFKDFP--------SYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPL   73 (83)
T ss_dssp             EEEEEECCCTTCCHHHHHHHHTTST--------TEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred             eEEEEeCCCCCCCHHHHHHHHHhcC--------CeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEE
Confidence            5799999999999999999999999        45679999885 79999999999999999999997 79999999999


Q ss_pred             EEEecch
Q psy16116        517 ELFRSTT  523 (612)
Q Consensus       517 eV~~as~  523 (612)
                      .|..+.+
T Consensus        74 ~v~~a~~   80 (83)
T 3md1_A           74 RINWAAK   80 (83)
T ss_dssp             EEEECCC
T ss_pred             EEEecCc
Confidence            9998764

>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}

Probab=99.62  E-value=1.8e-15  Score=128.98  Aligned_cols=78  Identities=18%  Similarity=0.185  Sum_probs=72.5

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRY  515 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~  515 (612)
                      ...+|||+|||+++++++|+++|+.||        .+..|+|+.+.+|+++|||||+|.+.++|++|++ +|+..++||.
T Consensus        15 ~~~~l~v~nlp~~~~~~~l~~~F~~~G--------~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~   86 (95)
T 2ywk_A           15 ADRTVFVGNLEARVREEILYELFLQAG--------PLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRP   86 (95)
T ss_dssp             GGGEEEEECCCTTCCHHHHHHHHGGGS--------CEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEE
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHhcC--------CEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCE
Confidence            467899999999999999999999999        4567999999999999999999999999999997 7999999999


Q ss_pred             EEEEecc
Q psy16116        516 IELFRST  522 (612)
Q Consensus       516 IeV~~as  522 (612)
                      |.|..+.
T Consensus        87 l~V~~a~   93 (95)
T 2ywk_A           87 INVSGPS   93 (95)
T ss_dssp             CEEECCC
T ss_pred             EEEEEcC
Confidence            9998764

>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C

Probab=99.62  E-value=4.5e-16  Score=132.32  Aligned_cols=79  Identities=14%  Similarity=0.134  Sum_probs=67.8

Q ss_pred             cEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEEE
Q psy16116        439 VIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIRYI  516 (612)
Q Consensus       439 ~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~I  516 (612)
                      .+|||+|||+++++++|+++|+.||.    +  .+.+|+|+.|+ +|+++|||||+|.+.++|++||+ +|+..++||.|
T Consensus         2 ~~l~V~nL~~~~t~~~l~~~F~~~G~----~--~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i   75 (90)
T 3p5t_L            2 IALYIGNLTWWTTDEDLTEAVHSLGV----N--DILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNP   75 (90)
T ss_dssp             --CEEESCCTTCCHHHHHHHHHTTTC----C--CCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCC
T ss_pred             eEEEEeCCCCCCCHHHHHHHHHHhCC----C--ceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEE
Confidence            46999999999999999999999992    1  34679999986 89999999999999999999995 89999999999


Q ss_pred             EEEecch
Q psy16116        517 ELFRSTT  523 (612)
Q Consensus       517 eV~~as~  523 (612)
                      .|..+..
T Consensus        76 ~V~~~~~   82 (90)
T 3p5t_L           76 VVTPSNK   82 (90)
T ss_dssp             EECCC--
T ss_pred             EEEECCC
Confidence            9988754

>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A

Probab=99.61  E-value=5.1e-16  Score=126.89  Aligned_cols=73  Identities=23%  Similarity=0.340  Sum_probs=68.0

Q ss_pred             EEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHHhCCcccCCEEEEEE
Q psy16116        441 IRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALSKHKESIGIRYIELF  519 (612)
Q Consensus       441 VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~~~~~~iggR~IeV~  519 (612)
                      |||+|||+++++++|+++|+.||        .+..|+++.++ +|+++|||||+|.+.++|++|+++|+..++||.|.|.
T Consensus         2 l~v~nlp~~~t~~~l~~~F~~~G--------~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~   73 (75)
T 2mss_A            2 IFVGGLSVNTTVEDVKHYFEQFG--------KVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECK   73 (75)
T ss_dssp             EEEECCCSSCCHHHHHHHHHTTS--------CCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEE
T ss_pred             EEEecCCCCCCHHHHHHHHHhcC--------CEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEE
Confidence            89999999999999999999999        44678998887 7999999999999999999999999999999999997


Q ss_pred             ec
Q psy16116        520 RS  521 (612)
Q Consensus       520 ~a  521 (612)
                      .+
T Consensus        74 ~A   75 (75)
T 2mss_A           74 KA   75 (75)
T ss_dssp             CC
T ss_pred             eC
Confidence            54

>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A

Probab=99.61  E-value=1.2e-15  Score=128.22  Aligned_cols=77  Identities=18%  Similarity=0.259  Sum_probs=71.5

Q ss_pred             ccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHHhCCcccCCEEE
Q psy16116        438 QVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALSKHKESIGIRYI  516 (612)
Q Consensus       438 ~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~~~~~~iggR~I  516 (612)
                      .++|||+|||+++++++|+++|+.||        .+..|+++.+. +|+++|||||+|.+.++|++|+.+|+..++||.|
T Consensus         6 ~~~l~V~nlp~~~t~~~l~~~F~~~G--------~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l   77 (89)
T 3ucg_A            6 ARSIYVGNVDYGATAEELEAHFHGCG--------SVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQI   77 (89)
T ss_dssp             HTEEEEESCCTTCCHHHHHHHHGGGC--------CEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEEC
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhCC--------CEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEE
Confidence            46899999999999999999999999        45779999986 8999999999999999999999889999999999


Q ss_pred             EEEecc
Q psy16116        517 ELFRST  522 (612)
Q Consensus       517 eV~~as  522 (612)
                      .|..+.
T Consensus        78 ~V~~a~   83 (89)
T 3ucg_A           78 KVIPKR   83 (89)
T ss_dssp             EEEETT
T ss_pred             EEEEcc
Confidence            998864

>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.61  E-value=1.5e-15  Score=130.82  Aligned_cols=79  Identities=22%  Similarity=0.370  Sum_probs=72.6

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHHhCCcccCCEE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALSKHKESIGIRY  515 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~~~~~~iggR~  515 (612)
                      ..++|||+|||+++++++|+++|+.||        .+..|+|+.|+ +|+++|||||+|.+.++|++||++++..++||.
T Consensus         9 ~~~~l~V~nlp~~~t~~~l~~~F~~~G--------~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~   80 (99)
T 2dgs_A            9 KSNKIFVGGIPHNCGETELREYFKKFG--------VVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKK   80 (99)
T ss_dssp             SCCEEEEESCCSSCCHHHHHHHHSSSS--------CEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCB
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcC--------CeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeE
Confidence            457899999999999999999999999        45679999886 699999999999999999999999999999999


Q ss_pred             EEEEecch
Q psy16116        516 IELFRSTT  523 (612)
Q Consensus       516 IeV~~as~  523 (612)
                      |.|..+..
T Consensus        81 l~V~~a~~   88 (99)
T 2dgs_A           81 VEVKRAEP   88 (99)
T ss_dssp             CEEEECCC
T ss_pred             EEEEECCC
Confidence            99988753

>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.60  E-value=2.2e-15  Score=130.00  Aligned_cols=78  Identities=24%  Similarity=0.389  Sum_probs=72.3

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRY  515 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~  515 (612)
                      ...+|||+|||+++++++|+++|+.||        .+..|+|+.+++|+++|||||+|.+.++|++|++ +|+..++||.
T Consensus        16 ~~~~l~v~nlp~~~t~~~l~~~F~~~G--------~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~   87 (100)
T 2do4_A           16 EKHKLFISGLPFSCTKEELEEICKAHG--------TVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENI   87 (100)
T ss_dssp             CCSCEEEESCCTTCCHHHHHHHHTTTS--------CEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhCC--------CeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence            457799999999999999999999999        4577999999999999999999999999999995 7999999999


Q ss_pred             EEEEecc
Q psy16116        516 IELFRST  522 (612)
Q Consensus       516 IeV~~as  522 (612)
                      |.|..+.
T Consensus        88 l~v~~a~   94 (100)
T 2do4_A           88 IKVAISN   94 (100)
T ss_dssp             EEEEECC
T ss_pred             EEEEECC
Confidence            9998875

>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}

Probab=99.60  E-value=4.2e-15  Score=140.16  Aligned_cols=86  Identities=15%  Similarity=0.197  Sum_probs=75.7

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIR  514 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR  514 (612)
                      ...+|||+|||+++++++|+++|+.||    .|  .+..|+|+.|+ +|+++|||||+|.+.++|++||+ +|+..|+||
T Consensus        54 ~~~~lfVgnLp~~~te~~L~~~F~~~G----~i--~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr  127 (156)
T 3n9u_C           54 RRAAVYVGSFSWWTTDQQLIQVIRSIG----VY--DVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGE  127 (156)
T ss_dssp             --CEEEEECCCTTCCHHHHHHHHHHTT----CC--CEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHC----Cc--cEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence            457899999999999999999999999    22  35779999996 89999999999999999999997 599999999


Q ss_pred             EEEEEecchHHHHH
Q psy16116        515 YIELFRSTTAEVQQ  528 (612)
Q Consensus       515 ~IeV~~as~~e~~~  528 (612)
                      .|.|..+.++....
T Consensus       128 ~l~V~~a~~~~~~~  141 (156)
T 3n9u_C          128 KVDVRPATRQNLSQ  141 (156)
T ss_dssp             ECEEEECCHHHHHH
T ss_pred             EeEEEEcCCCcchh
Confidence            99999998776544

>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.60  E-value=2.6e-15  Score=129.08  Aligned_cols=79  Identities=23%  Similarity=0.235  Sum_probs=72.5

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHH-HhCCcccCCE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKAL-SKHKESIGIR  514 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL-~~~~~~iggR  514 (612)
                      ...+|||+|||+++++++|+++|+.||        .+..|+|+.++ +|+++|||||+|.+.++|++|| .+|+..++||
T Consensus         7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G--------~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~   78 (99)
T 1whw_A            7 GSGRLFVRNLSYTSSEEDLEKLFSAYG--------PLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGR   78 (99)
T ss_dssp             SCEEEEEECCCTTCCHHHHHHHHHTTS--------CEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcC--------CEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence            457899999999999999999999999        45679999887 8999999999999999999999 5899999999


Q ss_pred             EEEEEecch
Q psy16116        515 YIELFRSTT  523 (612)
Q Consensus       515 ~IeV~~as~  523 (612)
                      .|.|..+..
T Consensus        79 ~l~V~~a~~   87 (99)
T 1whw_A           79 MLHVLPSTI   87 (99)
T ss_dssp             EEEEEECCC
T ss_pred             EEEEEEcCC
Confidence            999998754

>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A

Probab=99.59  E-value=4.9e-15  Score=129.12  Aligned_cols=79  Identities=16%  Similarity=0.177  Sum_probs=73.1

Q ss_pred             CcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCE
Q psy16116        436 GAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIR  514 (612)
Q Consensus       436 ~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR  514 (612)
                      ....+|||+|||+++++++|+++|+.||        .+..|+|+.+.+|+++|||||+|.+.++|++||+ +|+..++||
T Consensus        27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G--------~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~   98 (107)
T 3ulh_A           27 ETGGKLLVSNLDFGVSDADIQELFAEFG--------TLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGR   98 (107)
T ss_dssp             CCSEEEEEESCCTTCCHHHHHHHHHTTS--------CEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcC--------CeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence            3567899999999999999999999999        4577999999999999999999999999999997 799999999


Q ss_pred             EEEEEecc
Q psy16116        515 YIELFRST  522 (612)
Q Consensus       515 ~IeV~~as  522 (612)
                      .|.|..++
T Consensus        99 ~l~V~~a~  106 (107)
T 3ulh_A           99 PMNIQLVT  106 (107)
T ss_dssp             ECEEEEEC
T ss_pred             EEEEEEeC
Confidence            99998764

>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}

Probab=99.59  E-value=3.5e-15  Score=128.63  Aligned_cols=77  Identities=21%  Similarity=0.222  Sum_probs=70.6

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCcee--------EEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-h
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEG--------VLFVKKP-DGKATGDAFVLFEKEEEADKALS-K  506 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~--------I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~  506 (612)
                      ...+|||+|||+++++++|+++|+.||        .+..        |+++.|+ +|+++|||||+|.+.++|++|++ +
T Consensus        12 ~~~~l~V~nLp~~~t~~~l~~~F~~~G--------~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l   83 (99)
T 2la6_A           12 DNNTIFVQGLGENVTIESVADYFKQIG--------IIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWF   83 (99)
T ss_dssp             CCSEEEEECCCSSCCHHHHHHHHTTTS--------CBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHhC--------CEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHh
Confidence            467899999999999999999999999        3456        8999985 79999999999999999999996 7


Q ss_pred             CCcccCCEEEEEEec
Q psy16116        507 HKESIGIRYIELFRS  521 (612)
Q Consensus       507 ~~~~iggR~IeV~~a  521 (612)
                      |+..++||.|.|..+
T Consensus        84 ~g~~~~g~~l~V~~A   98 (99)
T 2la6_A           84 DGKEFSGNPIKVSFA   98 (99)
T ss_dssp             TTCBSSSSBCEEEEC
T ss_pred             CCCEeCCcEEEEEec
Confidence            999999999999876

>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.59  E-value=5.8e-15  Score=125.59  Aligned_cols=78  Identities=21%  Similarity=0.252  Sum_probs=71.6

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIR  514 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR  514 (612)
                      ...+|||+|||+++++++|+++|+.||        .+..|+++.++ +|+++|||||+|.+.++|++|++ +|+..++||
T Consensus        14 ~~~~l~v~nlp~~~t~~~l~~~f~~~G--------~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~   85 (95)
T 2cqc_A           14 PNCCLGVFGLSLYTTERDLREVFSKYG--------PIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGR   85 (95)
T ss_dssp             GGGCEEEESCCSSCCHHHHHHHHHTTS--------CEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHhcC--------CeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence            467899999999999999999999999        45679999887 58999999999999999999997 799999999


Q ss_pred             EEEEEecc
Q psy16116        515 YIELFRST  522 (612)
Q Consensus       515 ~IeV~~as  522 (612)
                      .|.|..+.
T Consensus        86 ~l~v~~a~   93 (95)
T 2cqc_A           86 RIRVSGPS   93 (95)
T ss_dssp             EEEEECCS
T ss_pred             EEEEEecC
Confidence            99998764

>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*

Probab=99.59  E-value=3.1e-15  Score=124.74  Aligned_cols=77  Identities=22%  Similarity=0.194  Sum_probs=70.4

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeC-CCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKK-PDGKATGDAFVLFEKEEEADKALS-KHKESIGIR  514 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d-~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR  514 (612)
                      ..++|||+|||+++++++|+++|+.||        .+..|+++.+ .+|+++|||||+|.+.++|++|++ +|+..++||
T Consensus         6 ~~~~l~V~nl~~~~~~~~l~~~f~~~G--------~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~   77 (85)
T 3mdf_A            6 TKRVLYVGGLAEEVDDKVLHAAFIPFG--------DITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGR   77 (85)
T ss_dssp             CSSEEEEECCCTTCCHHHHHHHHGGGS--------CEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHhccC--------CEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence            457899999999999999999999999        4567999888 478999999999999999999995 799999999


Q ss_pred             EEEEEec
Q psy16116        515 YIELFRS  521 (612)
Q Consensus       515 ~IeV~~a  521 (612)
                      .|.|..+
T Consensus        78 ~l~v~~a   84 (85)
T 3mdf_A           78 TIRVNLA   84 (85)
T ss_dssp             ECEEEEC
T ss_pred             EEEEEEc
Confidence            9999875

>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A

Probab=99.59  E-value=1.1e-15  Score=132.80  Aligned_cols=81  Identities=20%  Similarity=0.283  Sum_probs=73.8

Q ss_pred             cccEEEEeCCCC------CCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCC
Q psy16116        437 AQVIIRMRGLPY------ECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHK  508 (612)
Q Consensus       437 ~~~~VfV~nLP~------s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~  508 (612)
                      .+.+|||+|||+      ++++++|+++|+.||        .+.+|+|+.|+ +|+++|||||+|.+.++|++||+ +|+
T Consensus         5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G--------~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng   76 (100)
T 3ns6_A            5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAG--------KVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHG   76 (100)
T ss_dssp             GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTS--------CEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTT
T ss_pred             cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcC--------CEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCC
Confidence            357899999999      999999999999999        45679999988 49999999999999999999996 899


Q ss_pred             cccCC-EEEEEEecchHH
Q psy16116        509 ESIGI-RYIELFRSTTAE  525 (612)
Q Consensus       509 ~~igg-R~IeV~~as~~e  525 (612)
                      ..++| |.|.|..+...+
T Consensus        77 ~~~~g~r~l~V~~a~~~~   94 (100)
T 3ns6_A           77 KRLDLKHRLFLYTMKDVE   94 (100)
T ss_dssp             CBSSSSCBCEEEESHHHH
T ss_pred             cccCCCeEEEEEECchhh
Confidence            99999 999999987654

>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B

Probab=99.59  E-value=3.5e-15  Score=127.94  Aligned_cols=79  Identities=20%  Similarity=0.383  Sum_probs=72.1

Q ss_pred             ccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEE
Q psy16116        438 QVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIRY  515 (612)
Q Consensus       438 ~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~  515 (612)
                      +.+|||+|||+++++++|+++|+.||        .+..|+|+.+. +|+++|||||+|.+.++|++|++ +|+..++||.
T Consensus         2 ~~~l~V~nLp~~~t~~~l~~~F~~~G--------~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~   73 (96)
T 2x1f_A            2 SRVVYLGSIPYDQTEEQILDLCSNVG--------PVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRF   73 (96)
T ss_dssp             CSEEEEESCCTTCCHHHHHHHHHTTS--------CEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred             CcEEEEECCCCCCCHHHHHHHHHhcC--------CEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence            36799999999999999999999999        45679999886 69999999999999999999995 7999999999


Q ss_pred             EEEEecchH
Q psy16116        516 IELFRSTTA  524 (612)
Q Consensus       516 IeV~~as~~  524 (612)
                      |.|..+..+
T Consensus        74 l~V~~a~~~   82 (96)
T 2x1f_A           74 LKCGYSSNS   82 (96)
T ss_dssp             CEEEECSCS
T ss_pred             EEEEEcCCC
Confidence            999988654

>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.59  E-value=3.1e-15  Score=127.70  Aligned_cols=79  Identities=20%  Similarity=0.167  Sum_probs=71.4

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeE-EEeeC-CCCCceeEEEEEeCCHHHHHHHHH-hCCcccCC
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGV-LFVKK-PDGKATGDAFVLFEKEEEADKALS-KHKESIGI  513 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I-~i~~d-~~GrskG~AFV~F~s~edA~kAL~-~~~~~igg  513 (612)
                      ...+|||+|||+++++++|+++|+.||        .+..| +|+.| .+|+++|||||+|.+.++|++||+ +|+..++|
T Consensus         4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G--------~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g   75 (96)
T 1x5t_A            4 GSSGIFIGNLDPEIDEKLLYDTFSAFG--------VILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCN   75 (96)
T ss_dssp             CCCEEEEECCCTTCCHHHHHHHHHTTS--------CBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETT
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcC--------CeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECC
Confidence            357899999999999999999999999        34568 89988 489999999999999999999998 79999999


Q ss_pred             EEEEEEecch
Q psy16116        514 RYIELFRSTT  523 (612)
Q Consensus       514 R~IeV~~as~  523 (612)
                      |.|.|..+..
T Consensus        76 ~~l~v~~a~~   85 (96)
T 1x5t_A           76 RPITVSYAFK   85 (96)
T ss_dssp             EECEEEESCC
T ss_pred             EEEEEEEecc
Confidence            9999998753

>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A

Probab=99.58  E-value=2.5e-15  Score=128.02  Aligned_cols=78  Identities=27%  Similarity=0.528  Sum_probs=68.4

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIR  514 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR  514 (612)
                      ...+|||+|||++++++||+++|+.||    .|    ..+.++.++ +|+++|||||+|.+.++|++||+ +|+..++||
T Consensus        14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G----~i----~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr   85 (95)
T 2ek1_A           14 GPTVIKVQNMPFTVSIDEILDFFYGYQ----VI----PGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSR   85 (95)
T ss_dssp             -CEEEEEECCCTTCCHHHHHHHTTTSC----BC----TTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcC----Cc----cceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCc
Confidence            357899999999999999999999999    33    346666654 78999999999999999999997 799999999


Q ss_pred             EEEEEecc
Q psy16116        515 YIELFRST  522 (612)
Q Consensus       515 ~IeV~~as  522 (612)
                      .|+|..++
T Consensus        86 ~l~v~~a~   93 (95)
T 2ek1_A           86 KVKLSGPS   93 (95)
T ss_dssp             ECEEECCC
T ss_pred             EEEEEecc
Confidence            99998765

>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.58  E-value=5e-15  Score=128.57  Aligned_cols=78  Identities=17%  Similarity=0.247  Sum_probs=71.2

Q ss_pred             CcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHHhCCcccCCE
Q psy16116        436 GAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALSKHKESIGIR  514 (612)
Q Consensus       436 ~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~~~~~~iggR  514 (612)
                      ...++|||+|||+++++++|+++|+.||         +..|+|+.+. +|+++|||||+|.+.++|++||++|+..|+||
T Consensus        13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g---------i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~   83 (103)
T 2dng_A           13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS---------IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDR   83 (103)
T ss_dssp             SSCEEEEEESCCTTCCHHHHHHHTTTSC---------EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTE
T ss_pred             CCCeEEEEeCCCCCCCHHHHHHHHHhCC---------ceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCe
Confidence            3567899999999999999999999997         2568999887 69999999999999999999998899999999


Q ss_pred             EEEEEecc
Q psy16116        515 YIELFRST  522 (612)
Q Consensus       515 ~IeV~~as  522 (612)
                      .|.|..+.
T Consensus        84 ~l~V~~a~   91 (103)
T 2dng_A           84 SLRVDIAE   91 (103)
T ss_dssp             ECEEEECC
T ss_pred             EEEEEEec
Confidence            99999875

>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.58  E-value=3.8e-15  Score=131.65  Aligned_cols=81  Identities=16%  Similarity=0.122  Sum_probs=73.8

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHHhCCcccCCEE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALSKHKESIGIRY  515 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~~~~~~iggR~  515 (612)
                      ..++|||+|||+++++++|+++|+.||        .+..|+|+.|+ +|+++|||||+|.+.++|++||.+|+..|+||.
T Consensus        24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G--------~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~   95 (114)
T 2cq4_A           24 DARTVFCMQLAARIRPRDLEDFFSAVG--------KVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVP   95 (114)
T ss_dssp             HHTEEEEESCCTTCCHHHHHHHHTTTS--------CEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhCC--------CEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeE
Confidence            357899999999999999999999999        45679999887 489999999999999999999988999999999


Q ss_pred             EEEEecchHH
Q psy16116        516 IELFRSTTAE  525 (612)
Q Consensus       516 IeV~~as~~e  525 (612)
                      |.|..+..+.
T Consensus        96 l~V~~a~~~~  105 (114)
T 2cq4_A           96 IIVQASQAEK  105 (114)
T ss_dssp             EEEEEHHHHH
T ss_pred             EEEEecCCCc
Confidence            9999986554

>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.58  E-value=4.2e-15  Score=126.65  Aligned_cols=78  Identities=19%  Similarity=0.274  Sum_probs=71.5

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIR  514 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR  514 (612)
                      ...+|||+|||+++++++|+++|+.||        .+..|+++.+. +|+++|||||+|.+.++|++|++ +|+..++||
T Consensus         4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G--------~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~   75 (95)
T 2dnz_A            4 GSSGLYVGSLHFNITEDMLRGIFEPFG--------KIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGR   75 (95)
T ss_dssp             CCCEEEEESCCTTCCHHHHHHHHTTTS--------CEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSS
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHhcC--------CEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCc
Confidence            356899999999999999999999999        45679999886 69999999999999999999997 799999999


Q ss_pred             EEEEEecc
Q psy16116        515 YIELFRST  522 (612)
Q Consensus       515 ~IeV~~as  522 (612)
                      .|.|..+.
T Consensus        76 ~l~V~~a~   83 (95)
T 2dnz_A           76 PMRVGHVT   83 (95)
T ss_dssp             CCEEEESS
T ss_pred             EEEEEEcc
Confidence            99998865

>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A

Probab=99.58  E-value=8.1e-16  Score=125.53  Aligned_cols=74  Identities=20%  Similarity=0.324  Sum_probs=67.7

Q ss_pred             EEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHHhCCcccCCEEEEE
Q psy16116        440 IIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALSKHKESIGIRYIEL  518 (612)
Q Consensus       440 ~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~~~~~~iggR~IeV  518 (612)
                      +|||+|||+++++++|+++|+.+|        .+..|+++.++ +|+++|||||+|.+.++|++|+++++..++||.|.|
T Consensus         1 ~l~v~nLp~~~t~~~l~~~F~~~G--------~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v   72 (75)
T 1iqt_A            1 KIFVGGLSPDTPEEKIREYFGGFG--------EVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEI   72 (75)
T ss_dssp             CEEESCCCSSCCHHHHHHHHHHHS--------CCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCE
T ss_pred             CEEEeCCCCCCCHHHHHHHHHhcC--------CeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEE
Confidence            489999999999999999999999        44678898886 689999999999999999999999999999999998


Q ss_pred             Eec
Q psy16116        519 FRS  521 (612)
Q Consensus       519 ~~a  521 (612)
                      ..+
T Consensus        73 ~~a   75 (75)
T 1iqt_A           73 KVA   75 (75)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            764

>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.58  E-value=2.5e-15  Score=130.77  Aligned_cols=79  Identities=16%  Similarity=0.221  Sum_probs=72.3

Q ss_pred             CcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHHhCCcccCCE
Q psy16116        436 GAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALSKHKESIGIR  514 (612)
Q Consensus       436 ~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~~~~~~iggR  514 (612)
                      ....+|||+|||+++++++|+++|+.||        .+..|+|+.++ +|+++|||||+|.+.++|++||+.++..|+||
T Consensus        14 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G--------~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~   85 (105)
T 2dh8_A           14 DEIGKLFVGGLDWSTTQETLRSYFSQYG--------EVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGR   85 (105)
T ss_dssp             SSSSEECCBSCCTTCCHHHHHHHHHTTS--------CEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcC--------CeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCE
Confidence            3567899999999999999999999999        45679999985 79999999999999999999998899999999


Q ss_pred             EEEEEecc
Q psy16116        515 YIELFRST  522 (612)
Q Consensus       515 ~IeV~~as  522 (612)
                      .|.|..+.
T Consensus        86 ~l~V~~a~   93 (105)
T 2dh8_A           86 NIDPKPCT   93 (105)
T ss_dssp             EEBCCCSC
T ss_pred             EEEEEEcc
Confidence            99998765

>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.58  E-value=7.1e-15  Score=129.53  Aligned_cols=79  Identities=20%  Similarity=0.179  Sum_probs=72.8

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRY  515 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~  515 (612)
                      ...+|||+|||+++++++|+++|+.||        .+..|+|+.+++|+++|||||+|.+.++|++||+ +|+..|+||.
T Consensus        14 ~~~~l~V~nlp~~~~~~~l~~~f~~~G--------~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~   85 (114)
T 2do0_A           14 LGSTVFVANLDYKVGWKKLKEVFSMAG--------VVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRP   85 (114)
T ss_dssp             CCSCEEEESCCTTCCHHHHHHHHTTTS--------CEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcC--------CeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCE
Confidence            457899999999999999999999999        4567999999999999999999999999999997 7999999999


Q ss_pred             EEEEecch
Q psy16116        516 IELFRSTT  523 (612)
Q Consensus       516 IeV~~as~  523 (612)
                      |.|..+..
T Consensus        86 l~v~~a~~   93 (114)
T 2do0_A           86 MHVKMDER   93 (114)
T ss_dssp             CEEEECSC
T ss_pred             EEEEEccc
Confidence            99998753

>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A

Probab=99.57  E-value=8.3e-15  Score=129.50  Aligned_cols=80  Identities=23%  Similarity=0.211  Sum_probs=73.2

Q ss_pred             CcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCC
Q psy16116        436 GAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGI  513 (612)
Q Consensus       436 ~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~igg  513 (612)
                      ...++|||+|||+++++++|+++|+.||        .+..|+|+.+. +|+++|||||+|.+.++|++||+ +|+..|+|
T Consensus        13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G--------~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g   84 (115)
T 2dgo_A           13 SNHFHVFVGDLSPEITTEDIKAAFAPFG--------RISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGG   84 (115)
T ss_dssp             TTCEEEEEESCCTTCCHHHHHHHHGGGS--------CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETT
T ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHhcC--------CeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence            3568899999999999999999999999        45679999986 89999999999999999999996 79999999


Q ss_pred             EEEEEEecch
Q psy16116        514 RYIELFRSTT  523 (612)
Q Consensus       514 R~IeV~~as~  523 (612)
                      |.|.|..+..
T Consensus        85 ~~l~V~~a~~   94 (115)
T 2dgo_A           85 RQIRTNWATR   94 (115)
T ss_dssp             EECEEEESSC
T ss_pred             EEEEEEEccC
Confidence            9999998753

>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.57  E-value=5e-15  Score=128.40  Aligned_cols=79  Identities=16%  Similarity=0.276  Sum_probs=72.7

Q ss_pred             CcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCC
Q psy16116        436 GAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGI  513 (612)
Q Consensus       436 ~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~igg  513 (612)
                      ....+|||+|||+++++++|+++|+.||        .+..|+|+.++ +|+++|||||+|.+.++|++||+ +|+..|+|
T Consensus        13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G--------~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g   84 (103)
T 2cq0_A           13 DDNATIRVTNLSEDTRETDLQELFRPFG--------SISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDH   84 (103)
T ss_dssp             SSSEEEEEESCCTTCCHHHHHTTSTTTC--------CEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETT
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhCC--------CeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCC
Confidence            3568899999999999999999999999        45679999986 79999999999999999999997 79999999


Q ss_pred             EEEEEEecc
Q psy16116        514 RYIELFRST  522 (612)
Q Consensus       514 R~IeV~~as  522 (612)
                      |.|.|..+.
T Consensus        85 ~~l~v~~a~   93 (103)
T 2cq0_A           85 LILNVEWAK   93 (103)
T ss_dssp             EECEEEESS
T ss_pred             cEEEEEECC
Confidence            999998865

>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.57  E-value=5.6e-15  Score=128.35  Aligned_cols=80  Identities=19%  Similarity=0.233  Sum_probs=73.0

Q ss_pred             CcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCC
Q psy16116        436 GAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGI  513 (612)
Q Consensus       436 ~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~igg  513 (612)
                      ....+|||+|||+++++++|+++|+.||        .+..|+|+.+. +|+++|||||+|.+.++|++||+ +|+..|+|
T Consensus        13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G--------~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g   84 (105)
T 1x5u_A           13 NQDATVYVGGLDEKVSEPLLWELFLQAG--------PVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYG   84 (105)
T ss_dssp             CTTTEEEEECCCTTCCHHHHHHHHHTTS--------CEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSS
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcC--------CeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECC
Confidence            3567899999999999999999999999        45679999887 79999999999999999999997 79999999


Q ss_pred             EEEEEEecch
Q psy16116        514 RYIELFRSTT  523 (612)
Q Consensus       514 R~IeV~~as~  523 (612)
                      |.|.|..+..
T Consensus        85 ~~l~v~~a~~   94 (105)
T 1x5u_A           85 KPIRVNKASA   94 (105)
T ss_dssp             CBCEEEETTT
T ss_pred             eEEEEEECCC
Confidence            9999998753

>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.57  E-value=4.3e-15  Score=127.47  Aligned_cols=78  Identities=28%  Similarity=0.540  Sum_probs=68.3

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeC-CCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKK-PDGKATGDAFVLFEKEEEADKALS-KHKESIGIR  514 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d-~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR  514 (612)
                      ...+|||+|||++++++||+++|+.||    .|    ..+.++.+ .+|+++|||||+|.+.++|++||+ +|+..|+||
T Consensus        14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G----~v----~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~   85 (98)
T 2cqp_A           14 GPTIIKVQNMPFTVSIDEILDFFYGYQ----VI----PGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSR   85 (98)
T ss_dssp             SSEEEEEESCCTTCCHHHHHHHTTTSC----CC----TTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHcC----Cc----cceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCe
Confidence            457899999999999999999999999    33    33555555 589999999999999999999995 799999999


Q ss_pred             EEEEEecc
Q psy16116        515 YIELFRST  522 (612)
Q Consensus       515 ~IeV~~as  522 (612)
                      .|+|..+.
T Consensus        86 ~l~V~~a~   93 (98)
T 2cqp_A           86 KVKLVLGS   93 (98)
T ss_dssp             ECEEEESS
T ss_pred             EEEEEEcC
Confidence            99998865

>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A

Probab=99.57  E-value=6.3e-15  Score=128.01  Aligned_cols=79  Identities=20%  Similarity=0.226  Sum_probs=72.4

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCC--
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGI--  513 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~igg--  513 (612)
                      ...+|||+|||+++++++|+++|+.||        .+..|+|+.+.+|+++|||||+|.+.++|++||+ +|+..+.|  
T Consensus        14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G--------~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~   85 (105)
T 2dnh_A           14 RDRKLFVGMLNKQQSEEDVLRLFQPFG--------VIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGA   85 (105)
T ss_dssp             CCCEEEEESCCTTCCHHHHHHHHTTTS--------CEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcC--------CeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCC
Confidence            467899999999999999999999999        4577999999999999999999999999999996 79998887  


Q ss_pred             -EEEEEEecch
Q psy16116        514 -RYIELFRSTT  523 (612)
Q Consensus       514 -R~IeV~~as~  523 (612)
                       |.|.|..+..
T Consensus        86 ~~~l~V~~a~~   96 (105)
T 2dnh_A           86 SSSLVVKFADT   96 (105)
T ss_dssp             SSCCEEEESCS
T ss_pred             CccEEEEECcc
Confidence             9999988753

>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A

Probab=99.57  E-value=5.6e-15  Score=130.76  Aligned_cols=78  Identities=13%  Similarity=0.149  Sum_probs=71.6

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIR  514 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR  514 (612)
                      ...+|||+|||+++++++|+++|+.||        .+..|+|+.+. +|+++|||||+|.+.++|++||+ +|+..|+||
T Consensus        24 ~~~~l~V~nLp~~~t~~~l~~~F~~~G--------~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~   95 (115)
T 2cpz_A           24 EGANLFIYHLPQEFGDQDLLQMFMPFG--------NVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMK   95 (115)
T ss_dssp             TTCCEEEESCCSSCCHHHHHHHHGGGS--------CCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHhcC--------CeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCE
Confidence            457899999999999999999999999        44679999987 79999999999999999999995 799999999


Q ss_pred             EEEEEecc
Q psy16116        515 YIELFRST  522 (612)
Q Consensus       515 ~IeV~~as  522 (612)
                      .|.|..+.
T Consensus        96 ~l~V~~a~  103 (115)
T 2cpz_A           96 RLKVQLKR  103 (115)
T ss_dssp             ECEEECCC
T ss_pred             EEEEEEcC
Confidence            99998765

>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}

Probab=99.57  E-value=5e-15  Score=130.78  Aligned_cols=78  Identities=18%  Similarity=0.330  Sum_probs=70.6

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHHhCCcccCCEE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALSKHKESIGIRY  515 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~~~~~~iggR~  515 (612)
                      ..++|||+|||+++++++|+++|+.||        .+..|+|+.+. +|+++|||||+|.+.++|++||+..+..++||.
T Consensus        24 ~~~~lfV~nLp~~~te~~L~~~F~~~G--------~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~   95 (109)
T 2rs2_A           24 SGCKMFIGGLSWQTTQEGLREYFGQFG--------EVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKT   95 (109)
T ss_dssp             --CCEEEESCCTTCCHHHHHHHHTTTS--------CEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHccC--------CeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEE
Confidence            457899999999999999999999999        45679999887 699999999999999999999998779999999


Q ss_pred             EEEEecc
Q psy16116        516 IELFRST  522 (612)
Q Consensus       516 IeV~~as  522 (612)
                      |.|..+.
T Consensus        96 l~V~~a~  102 (109)
T 2rs2_A           96 IDPKVAF  102 (109)
T ss_dssp             EEEEECC
T ss_pred             EEEEEcc
Confidence            9998875

>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}

Probab=99.57  E-value=5.7e-15  Score=131.97  Aligned_cols=79  Identities=23%  Similarity=0.269  Sum_probs=72.8

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRY  515 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~  515 (612)
                      ...+|||+|||+++++++|+++|+.||        .+..|.|+.+.+|+++|||||+|.+.++|++|++ +|+..++||.
T Consensus         6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G--------~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~   77 (116)
T 2fy1_A            6 HPGKLFIGGLNRETNEKMLKAVFGKHG--------PISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKA   77 (116)
T ss_dssp             SCCEEEEECCTTTCCHHHHHHHHHTSS--------CCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSB
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcC--------CEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence            457899999999999999999999999        4567999999999999999999999999999996 7999999999


Q ss_pred             EEEEecch
Q psy16116        516 IELFRSTT  523 (612)
Q Consensus       516 IeV~~as~  523 (612)
                      |.|..+..
T Consensus        78 l~V~~a~~   85 (116)
T 2fy1_A           78 IKVEQAKK   85 (116)
T ss_dssp             CEEEECCC
T ss_pred             EEEEECCC
Confidence            99998764

>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B

Probab=99.57  E-value=5.6e-15  Score=130.59  Aligned_cols=77  Identities=22%  Similarity=0.355  Sum_probs=68.8

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRY  515 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~  515 (612)
                      ...+|||+|||+++++++|+++|+.||        .+..|+|+.+  ++++|||||+|.+.++|.+|++ +|+..++||.
T Consensus         7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G--------~v~~v~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~   76 (115)
T 3lqv_A            7 VNRILYIRNLPYKITAEEMYDIFGKYG--------PIRQIRVGNT--PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRY   76 (115)
T ss_dssp             CCSEEEEESCCTTCCHHHHHHHHHTTS--------CEEEEEEECS--TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCB
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcC--------CeEEEEEeeC--CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence            457899999999999999999999999        4567888754  6679999999999999999997 8999999999


Q ss_pred             EEEEecch
Q psy16116        516 IELFRSTT  523 (612)
Q Consensus       516 IeV~~as~  523 (612)
                      |.|..+..
T Consensus        77 l~v~~a~~   84 (115)
T 3lqv_A           77 LVVLYYNA   84 (115)
T ss_dssp             CEEEECCH
T ss_pred             EEEEEecC
Confidence            99988764

>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.57  E-value=6.8e-15  Score=125.13  Aligned_cols=77  Identities=19%  Similarity=0.270  Sum_probs=70.4

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIR  514 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR  514 (612)
                      ...+|||+|||+++++++|+++|+.||        .+..|+++.++ +|+++|||||+|.+.++|++|++ +|+..++||
T Consensus        15 ~~~~l~V~nlp~~~t~~~l~~~f~~~G--------~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~   86 (94)
T 2e5h_A           15 SKSTVYVSNLPFSLTNNDLYRIFSKYG--------KVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGR   86 (94)
T ss_dssp             CTTSEEEESCCTTSCHHHHHHHTTTTS--------CEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTE
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHhcC--------CeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCc
Confidence            456799999999999999999999999        45679999887 58999999999999999999995 799999999


Q ss_pred             EEEEEec
Q psy16116        515 YIELFRS  521 (612)
Q Consensus       515 ~IeV~~a  521 (612)
                      .|.|..+
T Consensus        87 ~l~v~~a   93 (94)
T 2e5h_A           87 VIKASIA   93 (94)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEec
Confidence            9999875

>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1

Probab=99.57  E-value=7e-15  Score=127.94  Aligned_cols=79  Identities=18%  Similarity=0.155  Sum_probs=72.3

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIR  514 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR  514 (612)
                      ...+|||+|||+++++++|+++|+.||        .+..|.|+.+. +|+++|||||+|.+.++|++|++ +|+..++||
T Consensus        22 ~~~~l~V~nlp~~~t~~~l~~~f~~~G--------~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~   93 (106)
T 1p27_B           22 EGWILFVTGVHEEATEEDIHDKFAEYG--------EIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQ   93 (106)
T ss_dssp             TBEEEEEECCCTTCCHHHHHHHHGGGS--------CEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSS
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHhccC--------CeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCc
Confidence            457899999999999999999999999        45679999887 69999999999999999999997 799999999


Q ss_pred             EEEEEecch
Q psy16116        515 YIELFRSTT  523 (612)
Q Consensus       515 ~IeV~~as~  523 (612)
                      .|.|..+..
T Consensus        94 ~l~V~~a~~  102 (106)
T 1p27_B           94 PISVDWCFV  102 (106)
T ss_dssp             BCEEEESEE
T ss_pred             EEEEEeecC
Confidence            999988753

>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.56  E-value=4.8e-15  Score=128.10  Aligned_cols=79  Identities=22%  Similarity=0.179  Sum_probs=71.5

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIR  514 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR  514 (612)
                      ...+|||+|||+++++++|+++|+.||        .+..|+|+.+. +|+++|||||+|.+.++|++||+ +|+..|+||
T Consensus        11 ~~~~l~V~nLp~~~t~~~l~~~f~~~G--------~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~   82 (102)
T 2cqb_A           11 TKRVLYVGGLAEEVDDKVLHAAFIPFG--------DITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGR   82 (102)
T ss_dssp             CCSCEEEESCCSSCCHHHHHHHHTTTS--------CCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHhhccC--------CEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence            456799999999999999999999999        44669998885 79999999999999999999996 799999999


Q ss_pred             EEEEEecch
Q psy16116        515 YIELFRSTT  523 (612)
Q Consensus       515 ~IeV~~as~  523 (612)
                      .|.|..+..
T Consensus        83 ~l~V~~a~~   91 (102)
T 2cqb_A           83 TIRVNLAKP   91 (102)
T ss_dssp             EEEEEECCC
T ss_pred             EEEEEeCCC
Confidence            999998753

>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.56  E-value=9.1e-15  Score=126.75  Aligned_cols=78  Identities=22%  Similarity=0.282  Sum_probs=70.7

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHHhCCcccCCEE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALSKHKESIGIRY  515 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~~~~~~iggR~  515 (612)
                      ...+|||+|||+++++++|+++|+.||        .+..|+|+.++ +|+++|||||+|.+.++|++||+ +++.|+||.
T Consensus        14 ~~~~l~v~nlp~~~t~~~l~~~F~~~G--------~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~g~~   84 (103)
T 2cqg_A           14 KTSDLIVLGLPWKTTEQDLKEYFSTFG--------EVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS-QRHMIDGRW   84 (103)
T ss_dssp             CCCCEEEESCCSSCCHHHHHHHHGGGS--------CEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH-SCEEETTEE
T ss_pred             CCCEEEEEcCCCcCCHHHHHHHHHhcC--------CeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH-cCCeeCCeE
Confidence            456799999999999999999999999        45679999986 69999999999999999999998 578999999


Q ss_pred             EEEEecch
Q psy16116        516 IELFRSTT  523 (612)
Q Consensus       516 IeV~~as~  523 (612)
                      |.|..+..
T Consensus        85 l~v~~a~~   92 (103)
T 2cqg_A           85 CDCKLPNS   92 (103)
T ss_dssp             EEEECCCT
T ss_pred             EEEEecCC
Confidence            99998754

>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A

Probab=99.56  E-value=1e-14  Score=137.63  Aligned_cols=132  Identities=14%  Similarity=0.074  Sum_probs=73.2

Q ss_pred             EEeCCHHHHHHHHH-hCCCccC--ceEEEEeccCccc---hhhccCCCCc-chhhhccCCcccEEEEeCCCCCCCHHHHH
Q psy16116        384 VRFIDQEHRDMALK-RHKHHID--KRYIEVTKANGED---FINVAGGNNN-EAQAFLTRGAQVIIRMRGLPYECTAKQVI  456 (612)
Q Consensus       384 VeF~S~EdA~kAL~-~ng~~Ig--gR~IeV~~s~~~e---~~~~~g~~~~-e~~~~~~~~~~~~VfV~nLP~s~te~dLr  456 (612)
                      .+|++.+|++.|+. +++....  ||...+.......   +......... ............+|||+|||+++++++|+
T Consensus        11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~   90 (165)
T 1rk8_A           11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ   90 (165)
T ss_dssp             -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred             hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence            88999999999986 3433332  4444443322111   1100000000 00001112356789999999999999999


Q ss_pred             HHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEEEEEEecch
Q psy16116        457 DFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIRYIELFRSTT  523 (612)
Q Consensus       457 efF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~IeV~~as~  523 (612)
                      ++|+.||        .+..|.|+.+. +|+++|||||+|.+.++|++||+ +|+..|+||.|.|..+..
T Consensus        91 ~~F~~~G--------~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~  151 (165)
T 1rk8_A           91 EKFCDYG--------EIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFV  151 (165)
T ss_dssp             HHHGGGS--------CEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEE
T ss_pred             HHhhcCC--------CEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecC
Confidence            9999999        45679999885 89999999999999999999996 799999999999998754

>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.56  E-value=6.3e-15  Score=127.77  Aligned_cols=78  Identities=17%  Similarity=0.198  Sum_probs=72.0

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRY  515 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~  515 (612)
                      ...+|||+|||+++++++|+++|+.||        .+..|+|+.+ +|+++|||||+|.+.++|++||+ +|+..++||.
T Consensus        14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G--------~i~~v~i~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~   84 (103)
T 2d9p_A           14 QVVNLYVKNLDDGIDDERLRKAFSPFG--------TITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP   84 (103)
T ss_dssp             SCCCEEEECCCTTCCHHHHHHTTTTTS--------CEEEEEEEEC-SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSB
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcC--------CEEEEEEEcC-CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcE
Confidence            457899999999999999999999999        4567999998 99999999999999999999997 7999999999


Q ss_pred             EEEEecch
Q psy16116        516 IELFRSTT  523 (612)
Q Consensus       516 IeV~~as~  523 (612)
                      |.|..+..
T Consensus        85 l~V~~a~~   92 (103)
T 2d9p_A           85 LYVALAQR   92 (103)
T ss_dssp             CEEEECSS
T ss_pred             EEEEEecc
Confidence            99998753

>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.56  E-value=6.2e-15  Score=127.66  Aligned_cols=83  Identities=19%  Similarity=0.271  Sum_probs=74.2

Q ss_pred             ccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEE
Q psy16116        438 QVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIRY  515 (612)
Q Consensus       438 ~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~  515 (612)
                      .++|||+|||+++++++|+++|+.||        .+..|+++.++ +|+++|||||+|.+.++|++|++ +|+..++||.
T Consensus         8 ~~~l~V~nlp~~~~~~~l~~~f~~~G--------~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~   79 (104)
T 1p1t_A            8 LRSVFVGNIPYEATEEQLKDIFSEVG--------PVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRA   79 (104)
T ss_dssp             HSCEEEESCCTTSCHHHHHHHHHTTS--------CCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSC
T ss_pred             ccEEEEeCCCCcCCHHHHHHHHHhcC--------CeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcE
Confidence            46799999999999999999999999        44679999886 79999999999999999999996 7999999999


Q ss_pred             EEEEecchHHHHH
Q psy16116        516 IELFRSTTAEVQQ  528 (612)
Q Consensus       516 IeV~~as~~e~~~  528 (612)
                      |.|..+..+....
T Consensus        80 l~v~~a~~~~~~~   92 (104)
T 1p1t_A           80 LRVDNAASEKNKE   92 (104)
T ss_dssp             BEEEETTCTTHHH
T ss_pred             EEEEeCCCccchh
Confidence            9999997655443

>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.56  E-value=1.8e-15  Score=134.68  Aligned_cols=87  Identities=26%  Similarity=0.413  Sum_probs=76.4

Q ss_pred             CcccceecCCCHHHHHhhHhhcccccCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccCccc
Q psy16116        338 VALCPLVQNIWLSLLLNTIPGYEQVLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGED  417 (612)
Q Consensus       338 ~~l~vlV~nLp~~~~e~~fkeff~~~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~~~e  417 (612)
                      ...+|+|+|||++.++++|++||....+.+|+|+++++|+++|||||+|.+.++|++||++|++.|+||.|+|..++..+
T Consensus        15 ~~~~v~V~nLp~~~te~dl~~~F~~~~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~~~~   94 (109)
T 2dnn_A           15 DDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPATERQ   94 (109)
T ss_dssp             HHHEEEEECCCSSCCHHHHHHHTTTSCCCEEEECCCTTCCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEECCHHH
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHhccCCeeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCccc
Confidence            34567788888888888888888766788999999999999999999999999999999999999999999999999888


Q ss_pred             hhhccCC
Q psy16116        418 FINVAGG  424 (612)
Q Consensus       418 ~~~~~g~  424 (612)
                      |....+.
T Consensus        95 ~~~~~g~  101 (109)
T 2dnn_A           95 WVAAGGH  101 (109)
T ss_dssp             HHHHHCC
T ss_pred             hhhcCCc
Confidence            8765443

>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.56  E-value=7.4e-15  Score=130.16  Aligned_cols=79  Identities=23%  Similarity=0.360  Sum_probs=72.0

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHHhCCcccCCEE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALSKHKESIGIRY  515 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~~~~~~iggR~  515 (612)
                      ...+|||+|||+++++++|+++|+.||        .+..|+|+.+. +|+++|||||+|.+.++|++||+.++..|+||.
T Consensus        26 ~~~~l~V~nLp~~~te~~l~~~F~~~G--------~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~   97 (116)
T 1x4b_A           26 QFRKLFIGGLSFETTEESLRNYYEQWG--------KLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRV   97 (116)
T ss_dssp             HHTEEEEECCTTCCCHHHHHHHHTSSC--------CCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcC--------CEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEE
Confidence            357899999999999999999999999        44679999886 699999999999999999999988999999999


Q ss_pred             EEEEecch
Q psy16116        516 IELFRSTT  523 (612)
Q Consensus       516 IeV~~as~  523 (612)
                      |.|..+..
T Consensus        98 l~V~~a~~  105 (116)
T 1x4b_A           98 VEPKRAVA  105 (116)
T ss_dssp             EEEECCSS
T ss_pred             EEEEECCC
Confidence            99988653

>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.56  E-value=6.5e-15  Score=126.35  Aligned_cols=78  Identities=22%  Similarity=0.278  Sum_probs=70.1

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCC--C--CceeEEEEEeCCHHHHHHHHH-hCCccc
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPD--G--KATGDAFVLFEKEEEADKALS-KHKESI  511 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~--G--rskG~AFV~F~s~edA~kAL~-~~~~~i  511 (612)
                      ...+|||+|||+++++++|+++|+.||        .+..|+|+.+.+  |  +++|||||+|.+.++|++||+ +|+..|
T Consensus         4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G--------~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~   75 (98)
T 2cpf_A            4 GSSGLFIKNLNFSTTEETLKGVFSKVG--------AIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTV   75 (98)
T ss_dssp             CCCCEEEESCCTTCCHHHHHHHHHTTS--------CEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcC--------CeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCee
Confidence            346799999999999999999999999        456789988754  4  899999999999999999997 799999


Q ss_pred             CCEEEEEEecc
Q psy16116        512 GIRYIELFRST  522 (612)
Q Consensus       512 ggR~IeV~~as  522 (612)
                      +||.|.|..+.
T Consensus        76 ~g~~l~V~~a~   86 (98)
T 2cpf_A           76 DGHKLEVRISE   86 (98)
T ss_dssp             TTEECEEECSS
T ss_pred             CCeEEEEEEcc
Confidence            99999998875

>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}

Probab=99.56  E-value=1e-14  Score=130.96  Aligned_cols=79  Identities=15%  Similarity=0.191  Sum_probs=73.2

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRY  515 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~  515 (612)
                      ...+|||+|||+++++++|+++|+.||        .+..|+|+.+.+|+++|||||+|.+.++|++|++ +|+..++||.
T Consensus        34 ~~~~l~V~nlp~~~t~~~l~~~F~~~G--------~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~  105 (124)
T 2kt5_A           34 TGAKLLVSNLDFGVSDADIQELFAEFG--------TLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRP  105 (124)
T ss_dssp             SCEEEEEESCCSSCCHHHHHHHHHTTS--------CCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcC--------CeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcE
Confidence            567899999999999999999999999        4567999999899999999999999999999997 7999999999


Q ss_pred             EEEEecch
Q psy16116        516 IELFRSTT  523 (612)
Q Consensus       516 IeV~~as~  523 (612)
                      |.|..+..
T Consensus       106 l~V~~a~~  113 (124)
T 2kt5_A          106 MDIQLVAS  113 (124)
T ss_dssp             EEEEEECC
T ss_pred             EEEEEeCC
Confidence            99998753

>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.56  E-value=6.7e-15  Score=127.99  Aligned_cols=79  Identities=23%  Similarity=0.356  Sum_probs=71.2

Q ss_pred             CcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCC--CCceeEEEEEeCCHHHHHHHHHhCCcccCC
Q psy16116        436 GAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPD--GKATGDAFVLFEKEEEADKALSKHKESIGI  513 (612)
Q Consensus       436 ~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~--GrskG~AFV~F~s~edA~kAL~~~~~~igg  513 (612)
                      ...++|||+|||+++++++|+++|+.|||         ..|+|+.+..  |+++|||||+|.+.++|++||.+|+..|+|
T Consensus        13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~Gi---------~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g   83 (104)
T 1wi8_A           13 SPPYTAFLGNLPYDVTEESIKEFFRGLNI---------SAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGN   83 (104)
T ss_dssp             SSCEEEEEESCCSSCCHHHHHHHTTTSCE---------EEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETT
T ss_pred             CCCCEEEEeCCCCcCCHHHHHHHHHHCCc---------eEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCC
Confidence            35688999999999999999999999982         4688888874  899999999999999999999889999999


Q ss_pred             EEEEEEecch
Q psy16116        514 RYIELFRSTT  523 (612)
Q Consensus       514 R~IeV~~as~  523 (612)
                      |.|.|..+..
T Consensus        84 ~~l~V~~a~~   93 (104)
T 1wi8_A           84 KRIRVDVADQ   93 (104)
T ss_dssp             EECEEEECCC
T ss_pred             cEEEEEEccC
Confidence            9999998753

>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.56  E-value=4.2e-15  Score=128.91  Aligned_cols=78  Identities=21%  Similarity=0.263  Sum_probs=71.8

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhc-CCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcc-cCC
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEA-GTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKES-IGI  513 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~-~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~-igg  513 (612)
                      ...+|||+|||+++++++|+++|+. ||        .+..|+|+.|.+|+++|||||+|.+.++|++||+ +++.. ++|
T Consensus         8 ~~~~l~V~nLp~~~t~~~l~~~F~~~~G--------~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g   79 (104)
T 2dhg_A            8 PEYSLFVGDLTPDVDDGMLYEFFVKVYP--------SCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGS   79 (104)
T ss_dssp             CCCCEEEECCCTTCCHHHHHHHHHHHCT--------TEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSS
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHHhCC--------CeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCC
Confidence            4577999999999999999999999 99        4567999999999999999999999999999997 79999 999


Q ss_pred             EEEEEEecc
Q psy16116        514 RYIELFRST  522 (612)
Q Consensus       514 R~IeV~~as  522 (612)
                      |.|.|..+.
T Consensus        80 ~~l~v~~a~   88 (104)
T 2dhg_A           80 KPVRLSVAI   88 (104)
T ss_dssp             SCCCCCBCC
T ss_pred             EeEEEEEcc
Confidence            999998764

>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.55  E-value=5.9e-15  Score=127.53  Aligned_cols=78  Identities=21%  Similarity=0.293  Sum_probs=71.3

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIR  514 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR  514 (612)
                      ...+|||+|||+++++++|+++|+.||        .+..|+|+.++ +|+++|||||+|.+.++|++||+ +|+..++||
T Consensus        11 ~~~~l~v~nLp~~~t~~~l~~~f~~~G--------~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~   82 (102)
T 1x5s_A           11 DEGKLFVGGLSFDTNEQSLEQVFSKYG--------QISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGR   82 (102)
T ss_dssp             CCSEEEEESCCTTCCHHHHHHHHHHHS--------CCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSC
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHhcC--------CeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence            457899999999999999999999999        45679999886 78999999999999999999995 799999999


Q ss_pred             EEEEEecc
Q psy16116        515 YIELFRST  522 (612)
Q Consensus       515 ~IeV~~as  522 (612)
                      .|.|..+.
T Consensus        83 ~l~v~~a~   90 (102)
T 1x5s_A           83 QIRVDQAG   90 (102)
T ss_dssp             CCEEEEEE
T ss_pred             EEEEEECC
Confidence            99998875

>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A

Probab=99.55  E-value=9.9e-15  Score=123.62  Aligned_cols=77  Identities=25%  Similarity=0.245  Sum_probs=70.1

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRY  515 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~  515 (612)
                      ..++|||+|||+++++++|+++|+.||        .+..|+|+.+ +|+++|||||+|.+.++|++|++ +|+..++||.
T Consensus         7 ~~~~l~V~nlp~~~t~~~l~~~f~~~G--------~v~~~~i~~~-~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~   77 (92)
T 2dgv_A            7 GACQIFVRNLPFDFTWKMLKDKFNECG--------HVLYADIKME-NGKSKGCGVVKFESPEVAERACRMMNGMKLSGRE   77 (92)
T ss_dssp             SCCEEEECSCCTTCCHHHHHHHHHTTS--------CEEEEEEEES-SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBC
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHhcC--------CEEEEEEEcc-CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence            457899999999999999999999999        4567888874 89999999999999999999997 7999999999


Q ss_pred             EEEEecc
Q psy16116        516 IELFRST  522 (612)
Q Consensus       516 IeV~~as  522 (612)
                      |.|..+.
T Consensus        78 l~v~~a~   84 (92)
T 2dgv_A           78 IDVRIDR   84 (92)
T ss_dssp             CCCEECS
T ss_pred             EEEEEcC
Confidence            9998764

>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.55  E-value=1.9e-14  Score=124.69  Aligned_cols=79  Identities=22%  Similarity=0.298  Sum_probs=71.2

Q ss_pred             CcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCE
Q psy16116        436 GAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIR  514 (612)
Q Consensus       436 ~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR  514 (612)
                      ....+|||+|||+++++++|+++|+.||        .+..|+|+.+..+ ++|||||+|.+.++|++||+ +|+..|+||
T Consensus        13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G--------~v~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~   83 (103)
T 2cq3_A           13 STPKRLHVSNIPFRFRDPDLRQMFGQFG--------KILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEGR   83 (103)
T ss_dssp             CCCCEEEEESCCTTCCHHHHHHHGGGTS--------CEEEEEEECCTTT-TCCEEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcC--------CeEEEEEEecCCC-CcEEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence            3567899999999999999999999999        4567999988765 99999999999999999997 799999999


Q ss_pred             EEEEEecch
Q psy16116        515 YIELFRSTT  523 (612)
Q Consensus       515 ~IeV~~as~  523 (612)
                      .|.|..+..
T Consensus        84 ~l~v~~a~~   92 (103)
T 2cq3_A           84 KIEVNNATA   92 (103)
T ss_dssp             ECEEEECCS
T ss_pred             EEEEEEccc
Confidence            999998753

>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.55  E-value=5.1e-15  Score=128.34  Aligned_cols=78  Identities=18%  Similarity=0.281  Sum_probs=71.7

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIR  514 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR  514 (612)
                      ...+|||+|||+++++++|+++|+.||        .+..|.|+.+. +|+++|||||+|.+.++|++||+ +|+..++||
T Consensus        12 ~~~~l~V~nLp~~~t~~~l~~~f~~~G--------~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~   83 (103)
T 2dnm_A           12 GMITLKVDNLTYRTSPDSLRRVFEKYG--------RVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGR   83 (103)
T ss_dssp             CCCEEEEESCCTTCCHHHHHHHHTTTS--------CEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTB
T ss_pred             CCeEEEEeCCCCCCCHHHHHHHHHhcC--------CEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCc
Confidence            457899999999999999999999999        45679999887 59999999999999999999997 799999999


Q ss_pred             EEEEEecc
Q psy16116        515 YIELFRST  522 (612)
Q Consensus       515 ~IeV~~as  522 (612)
                      .|.|..+.
T Consensus        84 ~l~V~~a~   91 (103)
T 2dnm_A           84 ELRVQVAR   91 (103)
T ss_dssp             CCEEEECS
T ss_pred             EEEEEECC
Confidence            99999875

>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.55  E-value=3.7e-15  Score=121.99  Aligned_cols=74  Identities=19%  Similarity=0.358  Sum_probs=67.1

Q ss_pred             EEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHHhCCcccCCEEEEE
Q psy16116        440 IIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALSKHKESIGIRYIEL  518 (612)
Q Consensus       440 ~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~~~~~~iggR~IeV  518 (612)
                      +|||+|||+++++++|+++|+.+|        .+..|+++.++ +|+++|||||+|.+.++|++|++..+..++||.|.|
T Consensus         2 ~l~v~nlp~~~t~~~l~~~F~~~G--------~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v   73 (77)
T 1uaw_A            2 KMFIGGLSWQTTQEGLREYFGQFG--------EVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDP   73 (77)
T ss_dssp             CEEEESCCSSCCSHHHHHHHTTTS--------CCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEE
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcC--------CEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEEEEE
Confidence            599999999999999999999999        44679999886 699999999999999999999985449999999999


Q ss_pred             Eec
Q psy16116        519 FRS  521 (612)
Q Consensus       519 ~~a  521 (612)
                      ..+
T Consensus        74 ~~a   76 (77)
T 1uaw_A           74 KVA   76 (77)
T ss_dssp             EEC
T ss_pred             Eec
Confidence            865

>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.55  E-value=1e-14  Score=128.48  Aligned_cols=78  Identities=22%  Similarity=0.257  Sum_probs=71.0

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCce--------eEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-h
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEE--------GVLFVKKP-DGKATGDAFVLFEKEEEADKALS-K  506 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~--------~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~  506 (612)
                      ...+|||+|||+++++++|+++|+.||    .|    .        .|+|+.++ +|+++|||||+|.+.++|++||+ +
T Consensus        14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G----~i----~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l   85 (113)
T 2cpe_A           14 DNSAIYVQGLNDSVTLDDLADFFKQCG----VV----KMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWF   85 (113)
T ss_dssp             CCCEEEEECCCTTCCHHHHHHHHTTTS----CB----CBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHH
T ss_pred             CCCEEEEcCCCCCCCHHHHHHHHHhcC----CE----eEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHc
Confidence            567899999999999999999999999    33    4        58999884 79999999999999999999997 7


Q ss_pred             CCcccCCEEEEEEecc
Q psy16116        507 HKESIGIRYIELFRST  522 (612)
Q Consensus       507 ~~~~iggR~IeV~~as  522 (612)
                      |+..|+||.|.|..+.
T Consensus        86 ~g~~~~g~~l~V~~a~  101 (113)
T 2cpe_A           86 DGKDFQGSKLKVSLAR  101 (113)
T ss_dssp             TTCEETTEECEEECSS
T ss_pred             CCCccCCCEEEEEECC
Confidence            9999999999998865

>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}

Probab=99.55  E-value=8.6e-15  Score=131.06  Aligned_cols=78  Identities=15%  Similarity=0.270  Sum_probs=71.8

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHHhCCcccCCEE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALSKHKESIGIRY  515 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~~~~~~iggR~  515 (612)
                      ..++|||+|||+++++++|+++|+.||        .+..|+|+.++ +|+++|||||+|.+.++|++||++|+..|+||.
T Consensus        35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G--------~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~  106 (124)
T 2jwn_A           35 DKRSVYVGNVDYGSTAQDLEAHFSSCG--------SINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRT  106 (124)
T ss_dssp             HHTEEEEEEECTTCCHHHHHHHHHTTS--------CEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcC--------CEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeE
Confidence            357899999999999999999999999        45679999885 899999999999999999999988999999999


Q ss_pred             EEEEecc
Q psy16116        516 IELFRST  522 (612)
Q Consensus       516 IeV~~as  522 (612)
                      |.|..+.
T Consensus       107 l~V~~a~  113 (124)
T 2jwn_A          107 IKVLPKR  113 (124)
T ss_dssp             CEEEESS
T ss_pred             EEEEECC
Confidence            9998764

>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}

Probab=99.55  E-value=1.1e-14  Score=125.39  Aligned_cols=79  Identities=15%  Similarity=0.080  Sum_probs=71.1

Q ss_pred             cEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEEEE
Q psy16116        439 VIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRYIE  517 (612)
Q Consensus       439 ~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~Ie  517 (612)
                      .-|+|+||++.+||++|+++|.+||        .+.++++..     +||||||+|.+.++|++|++ +|+..++||.|+
T Consensus         8 ~wL~VgNL~~~~te~~L~~lF~q~G--------~V~~~~l~~-----~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~   74 (89)
T 2wbr_A            8 SWLLLKNLTAQIDGPTLRTLCMQHG--------PLVSFHPYL-----NQGIALCKYTTREEANKAQMALNNCVLANTTIF   74 (89)
T ss_dssp             CEEEEECCCTTCCCHHHHHHHHHHS--------CEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred             ceEEEeCCCccCCHHHHHHHHHhhC--------CEEEEEEcC-----CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEE
Confidence            4599999999999999999999999        446688763     79999999999999999996 899999999999


Q ss_pred             EEecchHHHHHHh
Q psy16116        518 LFRSTTAEVQQVL  530 (612)
Q Consensus       518 V~~as~~e~~~~~  530 (612)
                      |..++..|+....
T Consensus        75 V~~A~e~~~~~~~   87 (89)
T 2wbr_A           75 AESPSENEVQSIM   87 (89)
T ss_dssp             EECCCHHHHHHHH
T ss_pred             EEECCHHHHHHHh
Confidence            9999988877654

>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.55  E-value=1.1e-14  Score=127.42  Aligned_cols=79  Identities=19%  Similarity=0.232  Sum_probs=71.6

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hC------C
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KH------K  508 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~------~  508 (612)
                      ...+|||+|||+++++++|+++|+.||        .+..|+|+.|. +|+++|||||+|.+.++|++||+ +|      +
T Consensus        14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G--------~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~   85 (111)
T 1x4h_A           14 EGKTVFIRNLSFDSEEEALGEVLQQFG--------DLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGG   85 (111)
T ss_dssp             CCCCEEEESCCTTCCHHHHHHHHHTTS--------CEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCC
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHhcC--------CeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCC
Confidence            457899999999999999999999999        45679999886 68999999999999999999997 68      9


Q ss_pred             cccCCEEEEEEecch
Q psy16116        509 ESIGIRYIELFRSTT  523 (612)
Q Consensus       509 ~~iggR~IeV~~as~  523 (612)
                      ..++||.|.|..+..
T Consensus        86 ~~~~g~~l~v~~a~~  100 (111)
T 1x4h_A           86 LKLDGRQLKVDLAVT  100 (111)
T ss_dssp             EESSSCEEEEECCCC
T ss_pred             cEEcCEEEEEEECCC
Confidence            999999999988753

>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*

Probab=99.55  E-value=1.1e-14  Score=127.73  Aligned_cols=79  Identities=15%  Similarity=0.086  Sum_probs=72.3

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIR  514 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR  514 (612)
                      ...+|||+|||+++++++|+++|+.||        .+..|+|+.+. +|+++|||||+|.+.++|++||+ +|+..++||
T Consensus        25 ~~~~l~V~nlp~~~t~~~l~~~F~~~G--------~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~   96 (110)
T 1oo0_B           25 EGWILFVTSIHEEAQEDEIQEKFCDYG--------EIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQ   96 (110)
T ss_dssp             TBEEEEEESCCTTCCHHHHHHHHGGGS--------CEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcC--------CEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCc
Confidence            567899999999999999999999999        45679998886 79999999999999999999997 799999999


Q ss_pred             EEEEEecch
Q psy16116        515 YIELFRSTT  523 (612)
Q Consensus       515 ~IeV~~as~  523 (612)
                      .|.|..+..
T Consensus        97 ~l~V~~a~~  105 (110)
T 1oo0_B           97 TIQVDWCFV  105 (110)
T ss_dssp             ECEEEESEE
T ss_pred             EEEEEEccc
Confidence            999998753

>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}

Probab=99.55  E-value=8.9e-15  Score=129.12  Aligned_cols=80  Identities=20%  Similarity=0.267  Sum_probs=72.6

Q ss_pred             CcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCC
Q psy16116        436 GAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGI  513 (612)
Q Consensus       436 ~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~igg  513 (612)
                      ...++|||+|||+++++++|+++|+.||        .+..|+|+.++ +|+++|||||+|.+.++|++|++ +++..++|
T Consensus        24 ~~~~~l~V~nLp~~~te~~l~~~F~~~G--------~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g   95 (108)
T 2jrs_A           24 AGPMRLYVGSLHFNITEDMLRGIFEPFG--------RIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAG   95 (108)
T ss_dssp             SSCEEEEEECCCSSCCHHHHHHHHTTTS--------CEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSS
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcC--------CeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC
Confidence            3567899999999999999999999999        45679999885 78999999999999999999996 79999999


Q ss_pred             EEEEEEecch
Q psy16116        514 RYIELFRSTT  523 (612)
Q Consensus       514 R~IeV~~as~  523 (612)
                      |.|.|..+..
T Consensus        96 ~~l~V~~a~~  105 (108)
T 2jrs_A           96 RPMKVGHVTE  105 (108)
T ss_dssp             SCCEEECSCS
T ss_pred             EEEEEEEccc
Confidence            9999988753

>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.55  E-value=1e-14  Score=125.94  Aligned_cols=76  Identities=28%  Similarity=0.365  Sum_probs=69.6

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRY  515 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~  515 (612)
                      ..++|||+|||+++++++|+++|+.||           .|+++.+.+|+++|||||+|.+.++|++||+ +|+..|+||.
T Consensus        14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g-----------~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~   82 (101)
T 2fc9_A           14 ESKTLVLSNLSYSATEETLQEVFEKAT-----------FIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRA   82 (101)
T ss_dssp             CCSEEEEESCCTTCCHHHHHHHCSSCS-----------EEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhCC-----------EEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeE
Confidence            467899999999999999999999998           2577778889999999999999999999997 8999999999


Q ss_pred             EEEEecch
Q psy16116        516 IELFRSTT  523 (612)
Q Consensus       516 IeV~~as~  523 (612)
                      |.|..+..
T Consensus        83 l~v~~a~~   90 (101)
T 2fc9_A           83 IRLELQGP   90 (101)
T ss_dssp             EEEEECSS
T ss_pred             EEEEEcCC
Confidence            99998753

>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}

Probab=99.55  E-value=7.4e-15  Score=130.39  Aligned_cols=78  Identities=14%  Similarity=0.117  Sum_probs=71.2

Q ss_pred             CcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCC
Q psy16116        436 GAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGI  513 (612)
Q Consensus       436 ~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~igg  513 (612)
                      ...++|||+|||+++++++|+++|+.||        .+..|+|+.++ +|+++|||||+|.+.++|++||+ +|+..++|
T Consensus        38 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G--------~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g  109 (118)
T 2khc_A           38 PEGCNLFIYHLPQEFTDTDLASTFLPFG--------NVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGT  109 (118)
T ss_dssp             CCSEEEEEECSCTTCCHHHHHHHTTTSC--------EEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETT
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcC--------CEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECC
Confidence            3568899999999999999999999999        45679999885 69999999999999999999997 79999999


Q ss_pred             EEEEEEec
Q psy16116        514 RYIELFRS  521 (612)
Q Consensus       514 R~IeV~~a  521 (612)
                      |.|+|..+
T Consensus       110 ~~l~V~~a  117 (118)
T 2khc_A          110 KRLKVQLK  117 (118)
T ss_dssp             EECCEEEC
T ss_pred             EEEEEEec
Confidence            99999865

>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.55  E-value=1.1e-14  Score=126.81  Aligned_cols=79  Identities=23%  Similarity=0.321  Sum_probs=71.8

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC--CCCceeEEEEEeCCHHHHHHHHH-h-CCcccC
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP--DGKATGDAFVLFEKEEEADKALS-K-HKESIG  512 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~--~GrskG~AFV~F~s~edA~kAL~-~-~~~~ig  512 (612)
                      ...+|||+|||+++++++|+++|+.||        .+..|+|+.+.  +|+++|||||+|.+.++|++||+ + |+..|+
T Consensus        14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G--------~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~   85 (107)
T 2cph_A           14 TTSKILVRNIPFQANQREIRELFSTFG--------ELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLY   85 (107)
T ss_dssp             CCCCEEEESCCTTCCHHHHHHHHHTTS--------CEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSS
T ss_pred             CCCEEEEeCCCCcCCHHHHHHHHHccC--------CeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeEC
Confidence            457899999999999999999999999        45679998883  89999999999999999999996 6 899999


Q ss_pred             CEEEEEEecch
Q psy16116        513 IRYIELFRSTT  523 (612)
Q Consensus       513 gR~IeV~~as~  523 (612)
                      ||.|.|..+..
T Consensus        86 g~~l~v~~a~~   96 (107)
T 2cph_A           86 GRRLVLEWADS   96 (107)
T ss_dssp             SCBCEEEECCC
T ss_pred             CCEEEEEeCCC
Confidence            99999998753

>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A

Probab=99.55  E-value=2.4e-15  Score=138.10  Aligned_cols=117  Identities=14%  Similarity=0.125  Sum_probs=72.1

Q ss_pred             eEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCccchhhccCCCCcchhhhccCCcccEEEEeCCCCCCCHHHHHHHH
Q psy16116        381 EAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGEDFINVAGGNNNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFF  459 (612)
Q Consensus       381 ~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~e~~~~~g~~~~e~~~~~~~~~~~~VfV~nLP~s~te~dLrefF  459 (612)
                      ++|+++++..-+..|++ +++...+|+.- ..          .+....      +.....+|||+|||+++++++|+++|
T Consensus         6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~~~-~~----------~~~~~~------~~~~~~~l~V~nLp~~~te~~L~~~F   68 (135)
T 2lea_A            6 HHHHHSSGLVPRGSHMASMTGGQQMGRGS-MS----------YGRPPP------DVEGMTSLKVDNLTYRTSPDTLRRVF   68 (135)
T ss_dssp             ------------------------------CC----------SCCSCS------SGGGCCCEEEECCCSSCHHHHHHHHH
T ss_pred             cccccccCCCchhhhhhhccCCCCCCCCC-CC----------cCCCCC------CCCCCCEEEEeCCCCCCCHHHHHHHH
Confidence            55667777777777775 45544444320 00          000000      11234679999999999999999999


Q ss_pred             hcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEEEEEEecc
Q psy16116        460 EAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIRYIELFRST  522 (612)
Q Consensus       460 ~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~IeV~~as  522 (612)
                      +.||        .+..|+|+.+. +|+++|||||+|.+.++|++||+ +|+..|+||.|.|..+.
T Consensus        69 ~~~G--------~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~  125 (135)
T 2lea_A           69 EKYG--------RVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMAR  125 (135)
T ss_dssp             GGGS--------CCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECC
T ss_pred             HhcC--------CEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence            9999        44679998886 79999999999999999999996 79999999999998865

>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A

Probab=99.54  E-value=6.3e-15  Score=127.55  Aligned_cols=78  Identities=14%  Similarity=0.212  Sum_probs=72.1

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCcccCCEEE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALSKHKESIGIRYI  516 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~~~~~~iggR~I  516 (612)
                      ..++|||+|||+++++++|+++|+.||        .+..|+|+.|.+|+++|||||+|.+.++|++|++ ++..|+||.|
T Consensus         8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G--------~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l   78 (102)
T 2xs2_A            8 MPNTVFVGGIDVRMDETEIRSFFARYG--------SVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKL   78 (102)
T ss_dssp             EEEEEEEECCCTTCCHHHHHHHHGGGS--------CEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT-CCCEETTEEC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhCC--------CeEEEEEEECCCCCccceEEEEECCHHHHHHHHh-CCCeECCEEE
Confidence            347899999999999999999999999        4577999999999999999999999999999999 9999999999


Q ss_pred             EEEecch
Q psy16116        517 ELFRSTT  523 (612)
Q Consensus       517 eV~~as~  523 (612)
                      .|..+..
T Consensus        79 ~v~~a~~   85 (102)
T 2xs2_A           79 KLGPAIR   85 (102)
T ss_dssp             EEEEEEE
T ss_pred             EEEECCc
Confidence            9988753

>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}

Probab=99.54  E-value=1e-14  Score=122.17  Aligned_cols=77  Identities=19%  Similarity=0.192  Sum_probs=69.3

Q ss_pred             ccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCC-C-CceeEEEEEeCCHHHHHHHHH-hCCcccCCE
Q psy16116        438 QVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPD-G-KATGDAFVLFEKEEEADKALS-KHKESIGIR  514 (612)
Q Consensus       438 ~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~-G-rskG~AFV~F~s~edA~kAL~-~~~~~iggR  514 (612)
                      ..+|||+|||+++++++|+++|+.||        .+..|+|+.+.. + +++|||||+|.+.++|++|++ +|+..++||
T Consensus         4 ~~~l~V~nlp~~~t~~~l~~~F~~~G--------~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~   75 (88)
T 4a8x_A            4 PTKVHIGRLTRNVTKDHIMEIFSTYG--------KIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQ   75 (88)
T ss_dssp             CCEEEEECCCTTCCHHHHHHHHHTTS--------CEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhCC--------CEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCe
Confidence            46799999999999999999999999        456799988873 4 499999999999999999997 799999999


Q ss_pred             EEEEEecc
Q psy16116        515 YIELFRST  522 (612)
Q Consensus       515 ~IeV~~as  522 (612)
                      .|.|..+.
T Consensus        76 ~l~v~~a~   83 (88)
T 4a8x_A           76 EITATAVL   83 (88)
T ss_dssp             ECEEEEEC
T ss_pred             EEEEEECC
Confidence            99998874

>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}

Probab=99.54  E-value=2.8e-15  Score=129.94  Aligned_cols=78  Identities=24%  Similarity=0.362  Sum_probs=69.9

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC--CCCceeEEEEEeCCHHHHHHHHHhCCcccCCE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP--DGKATGDAFVLFEKEEEADKALSKHKESIGIR  514 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~--~GrskG~AFV~F~s~edA~kAL~~~~~~iggR  514 (612)
                      ..++|||+|||+++++++|+++|+.|||         ..|+|+.+.  +|+++|||||+|.+.++|++||++|+..++||
T Consensus        18 ~~~~l~V~nLp~~~t~~~l~~~F~~~Gi---------~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~   88 (100)
T 2j76_E           18 PPYTAFLGNLPYDVTEESIKEFFRGLNI---------SAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNR   88 (100)
T ss_dssp             --CEEEESCCSSCCSSSHHHHHSCSSCE---------EEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTB
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHhcCC---------eEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCe
Confidence            4578999999999999999999999982         468888886  79999999999999999999998899999999


Q ss_pred             EEEEEecch
Q psy16116        515 YIELFRSTT  523 (612)
Q Consensus       515 ~IeV~~as~  523 (612)
                      .|.|..+..
T Consensus        89 ~l~V~~a~~   97 (100)
T 2j76_E           89 RIRVDVADQ   97 (100)
T ss_dssp             CCCCEECCC
T ss_pred             EEEEEeccC
Confidence            999988753

>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.54  E-value=1.3e-14  Score=124.75  Aligned_cols=78  Identities=18%  Similarity=0.162  Sum_probs=70.8

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCce-eEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCC
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEE-GVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGI  513 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~-~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~igg  513 (612)
                      ...+|||+|||+++++++|+++|+.||        .+. .|+|+.|+ +|+++|||||+|.+.++|++|++ +|+..++|
T Consensus         8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G--------~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g   79 (99)
T 2div_A            8 MAASLWMGDLEPYMDENFISRAFATMG--------ETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPG   79 (99)
T ss_dssp             SSSEEEECSCCTTCCHHHHHHHHHHTT--------CCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESS
T ss_pred             CccEEEEeCCCCCCCHHHHHHHHHHhC--------CcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCC
Confidence            457899999999999999999999999        345 79999987 79999999999999999999998 79999999


Q ss_pred             EE----EEEEecc
Q psy16116        514 RY----IELFRST  522 (612)
Q Consensus       514 R~----IeV~~as  522 (612)
                      |.    |.|..+.
T Consensus        80 ~~~~~~l~v~~a~   92 (99)
T 2div_A           80 ATPAKRFKLNYAT   92 (99)
T ss_dssp             CSSCEECCEEETT
T ss_pred             CCcceeEEEeecC
Confidence            99    8887764

>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.54  E-value=2.4e-14  Score=124.09  Aligned_cols=78  Identities=15%  Similarity=0.161  Sum_probs=70.5

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRY  515 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~  515 (612)
                      ...+|||+|||+++++++|+++|+.||        .+..|+|+.+..+ ++|||||+|.+.++|++||+ +|+..++||.
T Consensus        14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G--------~i~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~   84 (103)
T 2cqi_A           14 QPRTLYVGNLSRDVTEVLILQLFSQIG--------PCKSCKMITEHTS-NDPYCFVEFYEHRDAAAALAAMNGRKILGKE   84 (103)
T ss_dssp             CCCEEEEESCCTTCCHHHHHHHHHHHS--------CEEEEEEECCCCS-SCCEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred             CCCEEEEeCCCccCCHHHHHHHHHhcC--------CEeEEEEEecCCC-CCCEEEEEECCHHHHHHHHHHhCCCCcCCCe
Confidence            467899999999999999999999999        4567999988644 79999999999999999997 8999999999


Q ss_pred             EEEEecch
Q psy16116        516 IELFRSTT  523 (612)
Q Consensus       516 IeV~~as~  523 (612)
                      |.|..+..
T Consensus        85 l~V~~a~~   92 (103)
T 2cqi_A           85 VKVNWATT   92 (103)
T ss_dssp             EEEEECCC
T ss_pred             EEEEECCC
Confidence            99998754

>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1

Probab=99.53  E-value=1.8e-14  Score=131.47  Aligned_cols=79  Identities=18%  Similarity=0.180  Sum_probs=72.3

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIR  514 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR  514 (612)
                      ...+|||+|||+++++++|+++|+.||        .+..|+|+.++ +|+++|||||+|.+.++|++||+ +|+..|+||
T Consensus        41 ~~~~l~V~nLp~~~~~~~l~~~F~~~G--------~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~  112 (139)
T 1u6f_A           41 VLRNLMVNYIPTTVDEVQLRQLFERYG--------PIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNK  112 (139)
T ss_dssp             TTSEEEEESCSTTCCHHHHHHHHHHHS--------CEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcC--------CeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence            457899999999999999999999999        45679999886 68999999999999999999997 799999999


Q ss_pred             EEEEEecch
Q psy16116        515 YIELFRSTT  523 (612)
Q Consensus       515 ~IeV~~as~  523 (612)
                      .|.|..+..
T Consensus       113 ~l~v~~a~~  121 (139)
T 1u6f_A          113 RLKVALAAS  121 (139)
T ss_dssp             EEEEEESSC
T ss_pred             EEEEEECCC
Confidence            999998753

>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.53  E-value=2.2e-14  Score=123.38  Aligned_cols=76  Identities=20%  Similarity=0.207  Sum_probs=69.4

Q ss_pred             cccEEEEeCCCCCCCHHHHH----HHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCccc
Q psy16116        437 AQVIIRMRGLPYECTAKQVI----DFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESI  511 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLr----efF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~i  511 (612)
                      ...+|||+|||+++++++|+    ++|+.||        .+..|+|+.|+.+  +|||||+|.+.++|++|++ +|+..+
T Consensus         8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G--------~v~~v~i~~~~~~--rg~afV~f~~~~~A~~Ai~~l~g~~~   77 (96)
T 2dgx_A            8 NGADVQVSNIDYRLSRKELQQLLQEAFARHG--------KVKSVELSPHTDY--QLKAVVQMENLQDAIGAVNSLHRYKI   77 (96)
T ss_dssp             SCEEEEEESCCTTSCHHHHHHHHHHHHHHHS--------CEEEEEECSCCST--TCCEEEEESSHHHHHHHHHHHTTEEE
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHhccccC--------cEEEEEEEeCCCC--CeEEEEEECCHHHHHHHHHHhCCCEE
Confidence            45689999999999999999    9999999        4567999988876  8999999999999999997 899999


Q ss_pred             CCEEEEEEecc
Q psy16116        512 GIRYIELFRST  522 (612)
Q Consensus       512 ggR~IeV~~as  522 (612)
                      +||.|.|..+.
T Consensus        78 ~gr~l~V~~a~   88 (96)
T 2dgx_A           78 GSKKILVSLAT   88 (96)
T ss_dssp             TTEEEEEEECC
T ss_pred             CCeEEEEEEcC
Confidence            99999998864

>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A

Probab=99.53  E-value=1.3e-14  Score=126.30  Aligned_cols=79  Identities=22%  Similarity=0.227  Sum_probs=71.2

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCccc---
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESI---  511 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~i---  511 (612)
                      ...+|||+|||+++++++|+++|+.||        .+..|+|+.|+ +|+++|||||+|.+.++|++|++ +|+..+   
T Consensus        12 ~~~~l~V~nlp~~~t~~~l~~~F~~~G--------~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~   83 (106)
T 2dgp_A           12 DAIKLFIGQIPRNLDEKDLKPLFEEFG--------KIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPG   83 (106)
T ss_dssp             TCEEEEEESCCTTCCHHHHHHHHHHHS--------CCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTT
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcC--------CeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCC
Confidence            457899999999999999999999999        45679999887 59999999999999999999996 799887   


Q ss_pred             CCEEEEEEecch
Q psy16116        512 GIRYIELFRSTT  523 (612)
Q Consensus       512 ggR~IeV~~as~  523 (612)
                      +||.|.|..+..
T Consensus        84 ~g~~l~v~~a~~   95 (106)
T 2dgp_A           84 MNRPIQVKPADS   95 (106)
T ss_dssp             CSSCCEEEECCC
T ss_pred             CCceEEEEECCc
Confidence            899999988753

>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.53  E-value=2.8e-14  Score=126.39  Aligned_cols=78  Identities=23%  Similarity=0.308  Sum_probs=70.4

Q ss_pred             CcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHHh-CCcccCC
Q psy16116        436 GAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALSK-HKESIGI  513 (612)
Q Consensus       436 ~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~~-~~~~igg  513 (612)
                      ...++|||+|||+++++++|+++|+.||        .+..|+|+.++ +|+++|||||+|.+.++|++||+. ++ .|+|
T Consensus        15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G--------~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g   85 (116)
T 2cqd_A           15 TTFTKIFVGGLPYHTTDASLRKYFEGFG--------DIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDG   85 (116)
T ss_dssp             CSSSEEEEECCCSSCCHHHHHHHHHTTS--------CEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETT
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhCC--------CeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCC
Confidence            3567899999999999999999999999        45679999886 699999999999999999999975 65 8999


Q ss_pred             EEEEEEecc
Q psy16116        514 RYIELFRST  522 (612)
Q Consensus       514 R~IeV~~as  522 (612)
                      |.|.|..+.
T Consensus        86 ~~l~V~~a~   94 (116)
T 2cqd_A           86 RKANVNLAY   94 (116)
T ss_dssp             EECEEEEST
T ss_pred             EEEEEEEcc
Confidence            999999875

>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.52  E-value=1.7e-14  Score=127.17  Aligned_cols=78  Identities=21%  Similarity=0.264  Sum_probs=70.5

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRY  515 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~  515 (612)
                      ...+|||+|||+++++++|+++|+.||        .+..|+++.+.. +++|||||+|.+.++|++|++ +|+..++||.
T Consensus        28 ~~~~l~V~nLp~~~te~~l~~~F~~~G--------~i~~v~i~~~~~-~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~   98 (109)
T 2err_A           28 QPKRLHVSNIPFRFRDPDLRQMFGQFG--------KILDVEIIFNER-GSKGFGFVTFENSADADRAREKLHGTVVEGRK   98 (109)
T ss_dssp             CCCEEEEESCCTTCCHHHHHHHGGGTC--------CCSCEEECCBTT-BCTTEEEEECCCSHHHHHHHHHHTTCEETTEE
T ss_pred             CCCEEEEECCCCcCCHHHHHHHHHhcC--------CEEEEEEEECCC-CCceEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence            567899999999999999999999999        446699988854 599999999999999999997 7999999999


Q ss_pred             EEEEecch
Q psy16116        516 IELFRSTT  523 (612)
Q Consensus       516 IeV~~as~  523 (612)
                      |.|..+..
T Consensus        99 l~V~~a~~  106 (109)
T 2err_A           99 IEVNNATA  106 (109)
T ss_dssp             CEEEECCC
T ss_pred             EEEEECCC
Confidence            99998764

>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.52  E-value=4.5e-15  Score=124.12  Aligned_cols=76  Identities=16%  Similarity=0.184  Sum_probs=68.7

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIR  514 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR  514 (612)
                      ...+|||+|||+++++++|+++|+.||        .+..++|+.++ +|+++|||||+|.+.++|++|++ +|+..++||
T Consensus         4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G--------~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~   75 (85)
T 1x4e_A            4 GSSGLYIRGLQPGTTDQDLVKLCQPYG--------KIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQ   75 (85)
T ss_dssp             CCCEEEEESCCTTCCHHHHHTTSTTTS--------CEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEE
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHhcC--------CeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeE
Confidence            456899999999999999999999999        45679999886 79999999999999999999997 799999999


Q ss_pred             EEEEEe
Q psy16116        515 YIELFR  520 (612)
Q Consensus       515 ~IeV~~  520 (612)
                      .|+|..
T Consensus        76 ~~~~~~   81 (85)
T 1x4e_A           76 MAKQSG   81 (85)
T ss_dssp             SCCSSC
T ss_pred             EEeecC
Confidence            887654

>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A

Probab=99.52  E-value=7.5e-15  Score=130.72  Aligned_cols=104  Identities=12%  Similarity=0.054  Sum_probs=58.0

Q ss_pred             ceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCccchh
Q psy16116        342 PLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGEDFI  419 (612)
Q Consensus       342 vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~e~~  419 (612)
                      +||+|||++.++++|+++|.. +.+.+|+|+++++ +++|||||+|.+.++|++||+ +++..|+||.|.|..+......
T Consensus         8 lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~-~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~~~~   86 (115)
T 4f25_A            8 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN-GSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKER   86 (115)
T ss_dssp             EEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT-EEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCCCC-
T ss_pred             EEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCC-CCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCcccc
Confidence            445566665555555555544 4588999998864 589999999999999999996 7999999999999776543211


Q ss_pred             hccCCCCcchhhhccCCcccEEEEeCCCCCCCHHH
Q psy16116        420 NVAGGNNNEAQAFLTRGAQVIIRMRGLPYECTAKQ  454 (612)
Q Consensus       420 ~~~g~~~~e~~~~~~~~~~~~VfV~nLP~s~te~d  454 (612)
                      ......        .......|||+|||+++|++.
T Consensus        87 ~~~~~~--------~~~~~~~lyv~Nl~~~~T~~a  113 (115)
T 4f25_A           87 EAELGA--------RAKEFTNVYIKNFGPGSTRAA  113 (115)
T ss_dssp             -----------------------------------
T ss_pred             cccccc--------ccCCCCceEeCCCCCCccccc
Confidence            110000        011234699999999999863

>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}

Probab=99.52  E-value=2e-14  Score=124.08  Aligned_cols=72  Identities=19%  Similarity=0.139  Sum_probs=65.9

Q ss_pred             EEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEEEEE
Q psy16116        440 IIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRYIEL  518 (612)
Q Consensus       440 ~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~IeV  518 (612)
                      +|||+|||+++++++|+++|+.||        .+..|+++.+    ++|||||+|.+.++|++|++ +|+..++||.|.|
T Consensus         2 ~l~V~nLp~~~t~~~l~~~F~~~G--------~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V   69 (101)
T 2hvz_A            2 KVYVGNLGTGAGKGELERAFSYYG--------PLRTVWIARN----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRV   69 (101)
T ss_dssp             EEEEECCCSSCSHHHHHHHHHHHC--------CCSEEEEESS----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEE
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcC--------CeEEEEEeeC----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEE
Confidence            699999999999999999999999        4467898876    88999999999999999997 7999999999999


Q ss_pred             Eecch
Q psy16116        519 FRSTT  523 (612)
Q Consensus       519 ~~as~  523 (612)
                      ..+..
T Consensus        70 ~~a~~   74 (101)
T 2hvz_A           70 ELSTG   74 (101)
T ss_dssp             EESSS
T ss_pred             EEccC
Confidence            98753

>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}

Probab=99.51  E-value=2.9e-14  Score=129.50  Aligned_cols=78  Identities=22%  Similarity=0.175  Sum_probs=70.5

Q ss_pred             CcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCC
Q psy16116        436 GAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGI  513 (612)
Q Consensus       436 ~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~igg  513 (612)
                      ....+|||+|||+++++++|+++|+.||        .+..|+|+.++ +|+++|||||+|.+.++|++||+ +|+..++|
T Consensus        61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G--------~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g  132 (140)
T 2ku7_A           61 TTKRVLYVGGLAEEVDDKVLHAAFIPFG--------DITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFG  132 (140)
T ss_dssp             SSCCEEEEECCCTTCCHHHHHHHHGGGS--------CEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETT
T ss_pred             CCCcEEEEEeCCCCCCHHHHHHHHHhcC--------CEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECC
Confidence            3568899999999999999999999999        45679999885 79999999999999999999995 79999999


Q ss_pred             EEEEEEec
Q psy16116        514 RYIELFRS  521 (612)
Q Consensus       514 R~IeV~~a  521 (612)
                      |.|+|..+
T Consensus       133 ~~l~v~~A  140 (140)
T 2ku7_A          133 RTIRVNLA  140 (140)
T ss_dssp             EEEEEEC-
T ss_pred             EEEEEEeC
Confidence            99999754

>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}

Probab=99.51  E-value=8.4e-15  Score=121.89  Aligned_cols=71  Identities=14%  Similarity=0.205  Sum_probs=63.8

Q ss_pred             cEEEEeCCCCCC------CHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCccc
Q psy16116        439 VIIRMRGLPYEC------TAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESI  511 (612)
Q Consensus       439 ~~VfV~nLP~s~------te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~i  511 (612)
                      .+|||+|||+++      ++++|+++|+.||        .+..|+++ ..+|+++|||||+|.+.++|++|++ +|+..+
T Consensus         2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G--------~i~~v~i~-~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~   72 (81)
T 2krb_A            2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFG--------KITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKL   72 (81)
T ss_dssp             CEEEEESCCCCCTTTHHHHHHHHHHHHHTTC--------CEEEEECC-CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCC
T ss_pred             CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcC--------CeEEEEec-CCCCcEeEEEEEEECCHHHHHHHHHHhcCccc
Confidence            579999999999      7799999999999        44668877 5689999999999999999999997 799999


Q ss_pred             CCE-EEEE
Q psy16116        512 GIR-YIEL  518 (612)
Q Consensus       512 ggR-~IeV  518 (612)
                      +|| .|.|
T Consensus        73 ~g~~~l~V   80 (81)
T 2krb_A           73 DKQHTFRV   80 (81)
T ss_dssp             SSSSCCCC
T ss_pred             CCceeEEe
Confidence            999 8766

>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}

Probab=99.51  E-value=6.3e-15  Score=134.01  Aligned_cols=81  Identities=19%  Similarity=0.167  Sum_probs=70.9

Q ss_pred             CcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCc----
Q psy16116        436 GAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKE----  509 (612)
Q Consensus       436 ~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~----  509 (612)
                      ....+|||+|||+++++++|+++|+.||    .|  ....|+|++|+ +|++||||||+|.+. +|.+|++ +|+.    
T Consensus        21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G----~v--~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~   93 (131)
T 2m2b_A           21 NANDTIILRNLNPHSTMDSILGALAPYA----VL--SSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPL   93 (131)
T ss_dssp             CCCCEEEECSCCTTCCSHHHHHHHGGGC----CC--CTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSC
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHhC----Cc--ceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCc
Confidence            3457899999999999999999999999    33  11239999998 899999999999999 9999996 7999    


Q ss_pred             ccCCEEEEEEecch
Q psy16116        510 SIGIRYIELFRSTT  523 (612)
Q Consensus       510 ~iggR~IeV~~as~  523 (612)
                      .++||.|.|..+..
T Consensus        94 ~~~gr~l~V~~a~~  107 (131)
T 2m2b_A           94 TIDGKTINVEFAKG  107 (131)
T ss_dssp             CGGGCCCCCEECCC
T ss_pred             cCCCEEEEEEECCC
Confidence            99999999988753

>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}

Probab=99.50  E-value=6.6e-15  Score=124.39  Aligned_cols=77  Identities=21%  Similarity=0.222  Sum_probs=68.5

Q ss_pred             cEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEEE
Q psy16116        439 VIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIRYI  516 (612)
Q Consensus       439 ~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~I  516 (612)
                      ++|||+|||+++++++|+++|+.||        .+..|+++.+. +|+++|||||+|.+.+ |++|++ +|+..++||.|
T Consensus         2 ~~l~V~nLp~~~t~~~l~~~F~~~G--------~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l   72 (90)
T 2ki2_A            2 RNIYVGNLVYSATSEQVKELFSQFG--------KVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTI   72 (90)
T ss_dssp             EEEEEEEECTTSSHHHHTTTHHHHT--------CCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSC
T ss_pred             cEEEECCCCCCCCHHHHHHHHHhcC--------CEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEE
Confidence            4699999999999999999999999        45679999887 5999999999999999 999997 69999999999


Q ss_pred             EEEecchH
Q psy16116        517 ELFRSTTA  524 (612)
Q Consensus       517 eV~~as~~  524 (612)
                      .|..+...
T Consensus        73 ~V~~a~~~   80 (90)
T 2ki2_A           73 RVTEANPK   80 (90)
T ss_dssp             SEEEC---
T ss_pred             EEEEcCCC
Confidence            99988654

>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*

Probab=99.50  E-value=2.9e-14  Score=127.94  Aligned_cols=79  Identities=18%  Similarity=0.155  Sum_probs=72.3

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIR  514 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR  514 (612)
                      ...+|||+|||+++++++|+++|+.||        .+..|.|+.+. +|+++|||||+|.+.++|++||+ +|+..|+|+
T Consensus        21 ~~~~l~V~nlp~~~t~~~l~~~F~~~G--------~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~   92 (126)
T 3ex7_B           21 EGWILFVTGVHEEATEEDIHDKFAEYG--------EIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQ   92 (126)
T ss_dssp             SSEEEEEESCCTTCCHHHHHHHHHTTS--------CEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcC--------CeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCe
Confidence            467899999999999999999999999        45679998886 89999999999999999999996 799999999


Q ss_pred             EEEEEecch
Q psy16116        515 YIELFRSTT  523 (612)
Q Consensus       515 ~IeV~~as~  523 (612)
                      .|.|..+..
T Consensus        93 ~l~v~~a~~  101 (126)
T 3ex7_B           93 PISVDWCFV  101 (126)
T ss_dssp             BCEEEESEE
T ss_pred             EEEEEEecC
Confidence            999998753

>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A

Probab=99.50  E-value=2e-14  Score=131.12  Aligned_cols=79  Identities=22%  Similarity=0.232  Sum_probs=71.8

Q ss_pred             CcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCC
Q psy16116        436 GAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGI  513 (612)
Q Consensus       436 ~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~igg  513 (612)
                      ....+|||+|||+++++++|+++|+.||        .+..|+|+.|+ +|+++|||||+|.+.++|++||+ +++..|+|
T Consensus        44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G--------~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g  115 (129)
T 2kxn_B           44 DPNCCLGVFGLSLYTTERDLREVFSKYG--------PIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDG  115 (129)
T ss_dssp             CCSSCBCEETCTTSCCHHHHHHHHTTTS--------CEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSS
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcC--------CeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence            3557899999999999999999999999        45679999886 68999999999999999999997 79999999


Q ss_pred             EEEEEEecc
Q psy16116        514 RYIELFRST  522 (612)
Q Consensus       514 R~IeV~~as  522 (612)
                      |.|.|..+.
T Consensus       116 ~~l~V~~a~  124 (129)
T 2kxn_B          116 RRIRVDFSI  124 (129)
T ss_dssp             SCCEESCCS
T ss_pred             EEEEEEEec
Confidence            999998764

>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C

Probab=99.50  E-value=5e-14  Score=140.63  Aligned_cols=87  Identities=13%  Similarity=0.116  Sum_probs=76.2

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIR  514 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR  514 (612)
                      ...+|||+|||+++|+++|+++|+.||+    +  .+..|+|++|+ +|++||||||+|.+.++|++||+ +|+..|+||
T Consensus        67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~----~--~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr  140 (229)
T 3q2s_C           67 KRIALYIGNLTWWTTDEDLTEAVHSLGV----N--DILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQ  140 (229)
T ss_dssp             --CEEEEESCCTTCCHHHHHHHHHTTTC----C--CEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTB
T ss_pred             CccEEEEeCCCCCCCHHHHHHHHHHHCC----c--ceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCE
Confidence            4568999999999999999999999992    1  35679999996 89999999999999999999997 799999999


Q ss_pred             EEEEEecchHHHHHH
Q psy16116        515 YIELFRSTTAEVQQV  529 (612)
Q Consensus       515 ~IeV~~as~~e~~~~  529 (612)
                      .|.|..+........
T Consensus       141 ~l~V~~a~~~~~~~~  155 (229)
T 3q2s_C          141 NPVVTPVNKQFLSQF  155 (229)
T ss_dssp             CCEEEECCHHHHHHH
T ss_pred             EeEEEECCCCccchh
Confidence            999999987765543

>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1

Probab=99.50  E-value=4.6e-15  Score=128.19  Aligned_cols=77  Identities=17%  Similarity=0.082  Sum_probs=67.6

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeC-CCCCceeEEEEEeCCHHHHHHHHHhCCcccCCEE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKK-PDGKATGDAFVLFEKEEEADKALSKHKESIGIRY  515 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d-~~GrskG~AFV~F~s~edA~kAL~~~~~~iggR~  515 (612)
                      ..++|||+|||+++++++|+++|+.||    .|    .. .++.+ .+|+++|||||+|.+.++|++||++|+..++||.
T Consensus        16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G----~v----~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~   86 (101)
T 1fj7_A           16 TPFNLFIGNLNPNKSVAELKVAISELF----AK----ND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNE   86 (101)
T ss_dssp             CSEEEEEECCCTTSCHHHHHHHHHHHH----HH----HT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHhC----Cc----ce-EEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcE
Confidence            457899999999999999999999999    33    33 34444 4789999999999999999999999999999999


Q ss_pred             EEEEecc
Q psy16116        516 IELFRST  522 (612)
Q Consensus       516 IeV~~as  522 (612)
                      |.|..+.
T Consensus        87 l~V~~a~   93 (101)
T 1fj7_A           87 IKLEKPK   93 (101)
T ss_dssp             CEEECCS
T ss_pred             EEEEEcC
Confidence            9998765

>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.49  E-value=2.2e-14  Score=126.79  Aligned_cols=78  Identities=17%  Similarity=0.242  Sum_probs=69.1

Q ss_pred             ccEEEEeCCCCCCCHHHHH---HHHhcCCCCccccccCceeEEEeeCCC----CCceeEEEEEeCCHHHHHHHHH-hCCc
Q psy16116        438 QVIIRMRGLPYECTAKQVI---DFFEAGTENSCNVMDGEEGVLFVKKPD----GKATGDAFVLFEKEEEADKALS-KHKE  509 (612)
Q Consensus       438 ~~~VfV~nLP~s~te~dLr---efF~~~Gi~~~~Ivd~v~~I~i~~d~~----GrskG~AFV~F~s~edA~kAL~-~~~~  509 (612)
                      ..+|||+|||++++++||+   ++|+.||        .+..|+|+.+..    ++++|||||+|.+.++|++||+ +|+.
T Consensus        15 ~~~l~V~nLp~~~~~~~l~~~~~~F~~~G--------~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~   86 (111)
T 2cpi_A           15 KNLVFVVGLSQRLADPEVLKRPEYFGKFG--------KIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNV   86 (111)
T ss_dssp             SSCEEEEEECTTTCCHHHHHSTTTTTTTS--------CEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTE
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHHhhccC--------CEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCC
Confidence            4679999999999999999   9999999        456799987762    3677999999999999999997 6999


Q ss_pred             ccCCEEEEEEecch
Q psy16116        510 SIGIRYIELFRSTT  523 (612)
Q Consensus       510 ~iggR~IeV~~as~  523 (612)
                      .|+||.|.|..+..
T Consensus        87 ~~~gr~l~V~~a~~  100 (111)
T 2cpi_A           87 VVDGRTLKASLGTT  100 (111)
T ss_dssp             EETTEEEEEESCCC
T ss_pred             EECCEEEEEEeccc
Confidence            99999999988753

>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.49  E-value=4.8e-14  Score=121.79  Aligned_cols=76  Identities=21%  Similarity=0.283  Sum_probs=68.4

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIR  514 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR  514 (612)
                      ...+|||+|||+++++++|+++|+.++           .|+++.+. +|+++|||||+|.+.++|++||+ +|+..|+||
T Consensus        14 ~~~~l~V~nLp~~~t~~~l~~~F~~~~-----------~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~   82 (102)
T 2fc8_A           14 PSKTLFVKGLSEDTTEETLKESFDGSV-----------RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGN   82 (102)
T ss_dssp             CCSSEEEECCCTTCCHHHHHHTSTTCS-----------EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred             CCCEEEEeCCCCccCHHHHHHHhcCCe-----------EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence            457799999999999999999999765           37788775 89999999999999999999997 799999999


Q ss_pred             EEEEEecch
Q psy16116        515 YIELFRSTT  523 (612)
Q Consensus       515 ~IeV~~as~  523 (612)
                      .|.|..+..
T Consensus        83 ~l~V~~a~~   91 (102)
T 2fc8_A           83 KVTLDWAKP   91 (102)
T ss_dssp             ECEEEECCC
T ss_pred             EEEEEEecC
Confidence            999998753

>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X

Probab=99.49  E-value=8.9e-14  Score=129.60  Aligned_cols=79  Identities=15%  Similarity=0.223  Sum_probs=72.7

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIR  514 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR  514 (612)
                      ...+|||+|||+++++++|+++|+.||        .+..|+|+.+. +|+++|||||+|.+.++|++||+ +|+..|+||
T Consensus        38 ~~~~l~V~nlp~~~t~~~l~~~F~~~G--------~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~  109 (156)
T 1h2v_Z           38 KSCTLYVGNLSFYTTEEQIYELFSKSG--------DIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDR  109 (156)
T ss_dssp             TCCEEEEESCCTTCCHHHHHHHHGGGS--------CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcC--------CeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence            457899999999999999999999999        45679999987 68999999999999999999997 799999999


Q ss_pred             EEEEEecch
Q psy16116        515 YIELFRSTT  523 (612)
Q Consensus       515 ~IeV~~as~  523 (612)
                      .|.|..+..
T Consensus       110 ~l~V~~a~~  118 (156)
T 1h2v_Z          110 IIRTDWDAG  118 (156)
T ss_dssp             ECEEEEESC
T ss_pred             EEEEEECCC
Confidence            999999853

>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.49  E-value=3.3e-14  Score=124.29  Aligned_cols=80  Identities=18%  Similarity=0.160  Sum_probs=69.4

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEe-eCC-CCCceeEEEEEeCCHHHHHHHHH-hC--Cccc
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFV-KKP-DGKATGDAFVLFEKEEEADKALS-KH--KESI  511 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~-~d~-~GrskG~AFV~F~s~edA~kAL~-~~--~~~i  511 (612)
                      ..++|||+|||+++++++|+++|+.||    .   .+..|.++ .+. +|+++|||||+|.+.++|++|++ ++  +..+
T Consensus         7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G----~---~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~   79 (109)
T 2dis_A            7 GNCRLFIGGIPKMKKREEILEEIAKVT----E---GVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQL   79 (109)
T ss_dssp             CSEEEEEECCCTTSCHHHHHHHHHHHS----T---TEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCB
T ss_pred             CCCEEEEeCCCCcCCHHHHHHHHHHhc----C---CceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCcee
Confidence            457899999999999999999999999    2   15678887 555 68999999999999999999997 65  5899


Q ss_pred             CCEEEEEEecch
Q psy16116        512 GIRYIELFRSTT  523 (612)
Q Consensus       512 ggR~IeV~~as~  523 (612)
                      +||.|.|..+..
T Consensus        80 ~g~~l~V~~a~~   91 (109)
T 2dis_A           80 WGHQIAVDWAEP   91 (109)
T ss_dssp             TTBCCEEEESCS
T ss_pred             cCCeEEEEEcCC
Confidence            999999998753

>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}

Probab=99.49  E-value=2.5e-14  Score=125.21  Aligned_cols=77  Identities=14%  Similarity=0.165  Sum_probs=69.2

Q ss_pred             cccEEEEeCCCCCC------CHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCc
Q psy16116        437 AQVIIRMRGLPYEC------TAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKE  509 (612)
Q Consensus       437 ~~~~VfV~nLP~s~------te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~  509 (612)
                      ..++|||+|||+.+      ++++|+++|+.||        .+..|.|+ ..+|+++|||||+|.+.++|++||+ +|+.
T Consensus        14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G--------~v~~v~i~-~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~   84 (105)
T 2nlw_A           14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFG--------KITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGY   84 (105)
T ss_dssp             CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGS--------CEEEEECC-CBTTBSCCEEEEEECSSSHHHHHHHHCSSE
T ss_pred             CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCC--------CEEEEEee-CCCCCeeeEEEEEECCHHHHHHHHHHhCCc
Confidence            35789999999999      7899999999999        44668887 5689999999999999999999997 7999


Q ss_pred             ccCCE-EEEEEecc
Q psy16116        510 SIGIR-YIELFRST  522 (612)
Q Consensus       510 ~iggR-~IeV~~as  522 (612)
                      .++|| .|.|..+.
T Consensus        85 ~~~g~~~l~V~~a~   98 (105)
T 2nlw_A           85 KLDKQHTFRVNLFT   98 (105)
T ss_dssp             ECSTTCEEEEECSC
T ss_pred             ccCCCceEEEEEcc
Confidence            99998 99998875

>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.48  E-value=7e-14  Score=123.33  Aligned_cols=78  Identities=12%  Similarity=0.149  Sum_probs=70.2

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCccc----
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESI----  511 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~i----  511 (612)
                      ...+|||+|||+++++++|+++|+.||        .+..|+|+.+.+|+++|||||+|.+.++|++||+ +|+..+    
T Consensus        24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G--------~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~   95 (114)
T 1x5o_A           24 DPTNLYISNLPLSMDEQELENMLKPFG--------QVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPP   95 (114)
T ss_dssp             CTTEEEEESCCTTCCHHHHHHTTTTTS--------CEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCT
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcC--------CEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCc
Confidence            457899999999999999999999999        4567999999999999999999999999999997 799998    


Q ss_pred             ----CCEEEEEEecc
Q psy16116        512 ----GIRYIELFRST  522 (612)
Q Consensus       512 ----ggR~IeV~~as  522 (612)
                          .+|.|.|..+.
T Consensus        96 ~~~~~~~~l~v~~a~  110 (114)
T 1x5o_A           96 GVSAPTEPLLCKFSG  110 (114)
T ss_dssp             TSCCCSSCBEEEECC
T ss_pred             cccCCCCceeEEccC
Confidence                56778887664

>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.48  E-value=1e-13  Score=121.40  Aligned_cols=77  Identities=17%  Similarity=0.150  Sum_probs=67.9

Q ss_pred             CcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCcccCCE
Q psy16116        436 GAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKAL-SKHKESIGIR  514 (612)
Q Consensus       436 ~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL-~~~~~~iggR  514 (612)
                      ....+|||+|||+++++++|+++|+.||        .+..|+|..  +++++|||||+|.+.++|++|| .+|+..|+||
T Consensus        20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G--------~v~~~~i~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~   89 (109)
T 1x4a_A           20 NNDCRIYVGNLPPDIRTKDIEDVFYKYG--------AIRDIDLKN--RRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGY   89 (109)
T ss_dssp             CCSSEEEEESCCTTCCHHHHHHHHGGGS--------CEEEEEECC--SSSSSCCEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcC--------CeEEEEEEE--CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence            3567899999999999999999999999        345677754  4678999999999999999999 5799999999


Q ss_pred             EEEEEecc
Q psy16116        515 YIELFRST  522 (612)
Q Consensus       515 ~IeV~~as  522 (612)
                      .|.|..+.
T Consensus        90 ~l~V~~a~   97 (109)
T 1x4a_A           90 RLRVEFPR   97 (109)
T ss_dssp             ECEEECCC
T ss_pred             EEEEEEcc
Confidence            99998765

>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A

Probab=99.48  E-value=6.9e-14  Score=125.04  Aligned_cols=76  Identities=18%  Similarity=0.157  Sum_probs=65.6

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRY  515 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~  515 (612)
                      ..++|||+|||++++++||+++|+.||.       .+..+.|..   ++++|||||+|.+.++|++||+ +|+..++||.
T Consensus        27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~-------~v~~v~i~~---~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~   96 (111)
T 2jvr_A           27 KRYRITMKNLPEGCSWQDLKDLARENSL-------ETTFSSVNT---RDFDGTGALEFPSEEILVEALERLNNIEFRGSV   96 (111)
T ss_dssp             CCEEEEEECSSCCCCHHHHHHHHHHHTC-------CCSEEECSS---CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEE
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHhCC-------eeEEEEEEc---CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence            4578999999999999999999999992       134466642   3689999999999999999996 7999999999


Q ss_pred             EEEEecc
Q psy16116        516 IELFRST  522 (612)
Q Consensus       516 IeV~~as  522 (612)
                      |.|..+.
T Consensus        97 i~V~~a~  103 (111)
T 2jvr_A           97 ITVERDD  103 (111)
T ss_dssp             EEEEESC
T ss_pred             EEEEECC
Confidence            9999875

>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.47  E-value=3.6e-14  Score=125.96  Aligned_cols=74  Identities=22%  Similarity=0.244  Sum_probs=64.9

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hC--CcccCC
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KH--KESIGI  513 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~--~~~igg  513 (612)
                      ...+|||+|||++++|+||+++|+.||        .+..|+|+.+     ||||||+|++.++|++|++ ++  +..++|
T Consensus        15 ~~~~LfV~nLp~~vte~dL~~lF~~fG--------~V~~v~i~~~-----kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~G   81 (105)
T 1sjq_A           15 PSRVIHIRKLPIDVTEGEVISLGLPFG--------KVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRG   81 (105)
T ss_dssp             CCCEEEECSCCTTSCHHHHHHHHHHHC--------CEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTSCCEETT
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcC--------CEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHhccCCceECC
Confidence            457899999999999999999999999        4567888854     7999999999999999997 44  478999


Q ss_pred             EEEEEEecch
Q psy16116        514 RYIELFRSTT  523 (612)
Q Consensus       514 R~IeV~~as~  523 (612)
                      |.|.|..+..
T Consensus        82 r~l~V~~A~~   91 (105)
T 1sjq_A           82 QPIYIQFSNH   91 (105)
T ss_dssp             EECCBCCCSS
T ss_pred             EEEEEEEcCC
Confidence            9999987753

>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1

Probab=99.47  E-value=5e-14  Score=120.38  Aligned_cols=74  Identities=27%  Similarity=0.477  Sum_probs=65.8

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRY  515 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~  515 (612)
                      ...+|||+|||+++++++|+++|+.||    .|       +++ ..+|+++|||||+|.+.++|++|++ +++..++||.
T Consensus        15 ~~~~l~V~nL~~~~t~~~l~~~F~~~g----~v-------~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~   82 (96)
T 1fjc_A           15 AARTLLAKNLSFNITEDELKEVFEDAL----EI-------RLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRS   82 (96)
T ss_dssp             GGGEEEEESCCSSCCHHHHHHHHCSEE----EE-------CCE-EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHhhCC----cE-------EEe-CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence            457899999999999999999999998    32       233 5578999999999999999999997 7999999999


Q ss_pred             EEEEecc
Q psy16116        516 IELFRST  522 (612)
Q Consensus       516 IeV~~as  522 (612)
                      |.|..+.
T Consensus        83 l~v~~a~   89 (96)
T 1fjc_A           83 VSLYYTG   89 (96)
T ss_dssp             EEEEECS
T ss_pred             EEEEEcC
Confidence            9998864

>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}

Probab=99.46  E-value=9.6e-14  Score=122.21  Aligned_cols=76  Identities=18%  Similarity=0.138  Sum_probs=65.6

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCc--ccCC
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKE--SIGI  513 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~--~igg  513 (612)
                      .+.+|||+|||+++|+++|+++|+.||        .+.+|+++     ++||||||+|.+.++|.+|++ +++.  .++|
T Consensus        20 ps~~l~V~NLp~~~te~~L~~lF~~fG--------~V~~v~i~-----~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~G   86 (100)
T 3r27_A           20 ASPVVHIRGLIDGVVEADLVEALQEFG--------PISYVVVM-----PKKRQALVEFEDVLGACNAVNYAADNQIYIAG   86 (100)
T ss_dssp             CCSEEEEESCCTTCCHHHHHHHHGGGS--------CEEEEEEE-----TTTTEEEEEESSHHHHHHHHHHHHHSCEEETT
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHhccC--------CEEEEEEE-----cCCCEEEEEECCHHHHHHHHHHhcCCCceeCC
Confidence            567899999999999999999999999        45678887     357999999999999999996 5655  4899


Q ss_pred             EEEEEEecchHH
Q psy16116        514 RYIELFRSTTAE  525 (612)
Q Consensus       514 R~IeV~~as~~e  525 (612)
                      |.|.|..+..++
T Consensus        87 r~i~V~~S~~k~   98 (100)
T 3r27_A           87 HPAFVNYSTSQK   98 (100)
T ss_dssp             EEEEEEECSCSC
T ss_pred             cEEEEEeccccc
Confidence            999999886543

>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A

Probab=99.45  E-value=2.1e-14  Score=131.37  Aligned_cols=80  Identities=30%  Similarity=0.387  Sum_probs=69.3

Q ss_pred             ccceecCCCHHHHHhhHhhcccccCee--eEEEeeCCCCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccCccc
Q psy16116        340 LCPLVQNIWLSLLLNTIPGYEQVLGLG--GVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGED  417 (612)
Q Consensus       340 l~vlV~nLp~~~~e~~fkeff~~~~v~--~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~~~e  417 (612)
                      .+|+|+|||++.++++|++||....+.  +|+|+++++|+++|||||+|++.++|++||++++..|+||.|+|..++.++
T Consensus        43 ~~lfVgnLp~~~te~dL~~~F~~~~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~~a~~~e  122 (126)
T 2hgm_A           43 GFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEE  122 (126)
T ss_dssp             CEEEEECCCTTCCHHHHHHHTTTSCEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCEEECHHH
T ss_pred             CEEEEeCCCCCCCHHHHHHHHhcCCceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEEECCHHH
Confidence            356688888888888888877766666  899999999999999999999999999999999999999999999888766


Q ss_pred             hh
Q psy16116        418 FI  419 (612)
Q Consensus       418 ~~  419 (612)
                      +.
T Consensus       123 ~~  124 (126)
T 2hgm_A          123 VR  124 (126)
T ss_dssp             HC
T ss_pred             hh
Confidence            53

>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.45  E-value=2.2e-13  Score=119.60  Aligned_cols=73  Identities=15%  Similarity=0.179  Sum_probs=66.3

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCC--
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGI--  513 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~igg--  513 (612)
                      ..++|||+|||++++++||+++|+.||        .+..|.|+.|      |||||+|.+.++|++||+ +|+..|+|  
T Consensus        14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G--------~i~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~   79 (108)
T 1x4c_A           14 SENRVVVSGLPPSGSWQDLKDHMREAG--------DVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHE   79 (108)
T ss_dssp             CCCEEEEESCCSSCCHHHHHHHHGGGS--------CEEEEEEETT------TEEEEEESSHHHHHHHHHHSSSEEEECTT
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcC--------CEeEEEEecC------CEEEEEECCHHHHHHHHHHHCcCCccCCc
Confidence            467899999999999999999999999        4567888866      899999999999999997 79999999  


Q ss_pred             ---EEEEEEecch
Q psy16116        514 ---RYIELFRSTT  523 (612)
Q Consensus       514 ---R~IeV~~as~  523 (612)
                         |.|.|..+..
T Consensus        80 ~~~~~i~V~~a~~   92 (108)
T 1x4c_A           80 GETAYIRVKVDGP   92 (108)
T ss_dssp             SCEEEEEEEESSC
T ss_pred             CcceEEEEEeCCC
Confidence               9999998764

>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A

Probab=99.45  E-value=2.4e-13  Score=132.30  Aligned_cols=77  Identities=14%  Similarity=0.245  Sum_probs=71.1

Q ss_pred             ccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCcccCCEEEE
Q psy16116        438 QVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALSKHKESIGIRYIE  517 (612)
Q Consensus       438 ~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~~~~~~iggR~Ie  517 (612)
                      .++|||+|||+++++++|+++|+.||        .+..|+|+.+.+|+++|||||+|.+.++|++||+..+..++||.|.
T Consensus       109 ~~~l~V~nLp~~~t~~~L~~~F~~~G--------~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~  180 (193)
T 2voo_A          109 NRSVYIKGFPTDATLDDIKEWLEDKG--------QVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLL  180 (193)
T ss_dssp             HTEEEEECCCTTCCHHHHHHHHTTSC--------CEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECE
T ss_pred             cCEEEecCCCCcCCHHHHHHHHhcCC--------CEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEE
Confidence            47899999999999999999999999        4577999999999999999999999999999999777799999999


Q ss_pred             EEecc
Q psy16116        518 LFRST  522 (612)
Q Consensus       518 V~~as  522 (612)
                      |....
T Consensus       181 V~~~~  185 (193)
T 2voo_A          181 ILFKD  185 (193)
T ss_dssp             EEETT
T ss_pred             EEEhH
Confidence            98754

>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.44  E-value=1.4e-13  Score=120.85  Aligned_cols=74  Identities=22%  Similarity=0.210  Sum_probs=65.0

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-h--CCcccCC
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-K--HKESIGI  513 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~--~~~~igg  513 (612)
                      ...+|||+|||++++++||+++|+.||        .+..|+++.+     ||||||+|.+.++|++|++ +  ++..++|
T Consensus        14 p~~~l~V~nLp~~~te~~L~~~F~~fG--------~v~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~G   80 (101)
T 2cq1_A           14 PSRVLHIRKLPGEVTETEVIALGLPFG--------KVTNILMLKG-----KNQAFLELATEEAAITMVNYYSAVTPHLRN   80 (101)
T ss_dssp             CCSEEEEESCCTTCCHHHHHHTTTTTS--------CEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCEETT
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcC--------CEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCceECC
Confidence            457899999999999999999999999        4456887743     7999999999999999997 3  6778999


Q ss_pred             EEEEEEecch
Q psy16116        514 RYIELFRSTT  523 (612)
Q Consensus       514 R~IeV~~as~  523 (612)
                      |.|.|..+..
T Consensus        81 r~l~V~~a~~   90 (101)
T 2cq1_A           81 QPIYIQYSNH   90 (101)
T ss_dssp             EECEEEECSC
T ss_pred             cEEEEEEcCc
Confidence            9999998764

>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}

Probab=99.44  E-value=1.4e-13  Score=118.86  Aligned_cols=73  Identities=12%  Similarity=0.077  Sum_probs=65.5

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRY  515 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~  515 (612)
                      ...+|||+|||+++++++|+++|+.||        .+..|++.     +++|||||+|.+.++|++|++ +|+..++||.
T Consensus        26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G--------~i~~~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~   92 (101)
T 2la4_A           26 RVTTAYIGNIPHFATEADLIPLFQNFG--------FILDFKHY-----PEKGCCFIKYDTHEQAAVCIVALANFPFQGRN   92 (101)
T ss_dssp             SCCEEEEESCCTTCCHHHHHHHHHTTS--------CCSEEEEE-----TTTTEEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred             CCCEEEEcCCCcccCHHHHHHHHHhCC--------CEEEEEEe-----cCCCEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence            457899999999999999999999999        34568886     678999999999999999995 7999999999


Q ss_pred             EEEEecc
Q psy16116        516 IELFRST  522 (612)
Q Consensus       516 IeV~~as  522 (612)
                      |.|..+.
T Consensus        93 l~V~~a~   99 (101)
T 2la4_A           93 LRTGWGK   99 (101)
T ss_dssp             CCCCBCC
T ss_pred             EEEEecc
Confidence            9998764

>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.44  E-value=6.9e-14  Score=122.41  Aligned_cols=77  Identities=23%  Similarity=0.290  Sum_probs=68.6

Q ss_pred             ccceecCCCHHHHHhhHhhcccccCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccCcc
Q psy16116        340 LCPLVQNIWLSLLLNTIPGYEQVLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGE  416 (612)
Q Consensus       340 l~vlV~nLp~~~~e~~fkeff~~~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~~~  416 (612)
                      .+|+|+|||++.++++|+++|...++.+|+|+++++|+++|||||+|++.++|++||++|+..|++|.|+|..++..
T Consensus        16 ~~l~V~nLp~~~te~~l~~~F~~~G~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~~~~~   92 (102)
T 1wez_A           16 HCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNSTA   92 (102)
T ss_dssp             CEEEEESCCTTCCHHHHHHSSCSCCCSEEEEEESSSSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEEECCC
T ss_pred             CEEEEeCCCCCCCHHHHHHHHHHcCceEEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECCCC
Confidence            35668888888888888888887556699999999999999999999999999999999999999999999887764

>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.44  E-value=3e-14  Score=129.62  Aligned_cols=82  Identities=22%  Similarity=0.325  Sum_probs=68.7

Q ss_pred             ccceecCCCHHHHHhhHhhcccccC-----eeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccC
Q psy16116        340 LCPLVQNIWLSLLLNTIPGYEQVLG-----LGGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKAN  414 (612)
Q Consensus       340 l~vlV~nLp~~~~e~~fkeff~~~~-----v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~  414 (612)
                      .+|+|+|||++.++++|++||...+     +.+|+|+++++|+++|||||+|++.++|++||++|++.|++|+|+|..++
T Consensus        24 ~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V~~a~  103 (123)
T 2dha_A           24 VIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRST  103 (123)
T ss_dssp             CEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECCEEEC
T ss_pred             CEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEEECC
Confidence            4566777777777777776666422     47899999999999999999999999999999999999999999999998


Q ss_pred             ccchhhc
Q psy16116        415 GEDFINV  421 (612)
Q Consensus       415 ~~e~~~~  421 (612)
                      .+++.+.
T Consensus       104 ~~e~~~~  110 (123)
T 2dha_A          104 AAEVQQV  110 (123)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8776553

>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...

Probab=99.43  E-value=8.6e-14  Score=118.92  Aligned_cols=77  Identities=18%  Similarity=0.165  Sum_probs=68.3

Q ss_pred             cccEEEEeCCCCCCCHHHHH----HHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCccc
Q psy16116        437 AQVIIRMRGLPYECTAKQVI----DFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESI  511 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLr----efF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~i  511 (612)
                      ...+|||+|||+++++++|+    ++|+.||        .+..|.+.  .+|+++|||||+|.+.++|++|++ +|+..+
T Consensus         7 ~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G--------~i~~v~i~--~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~   76 (97)
T 1nu4_A            7 PNHTIYINNLNEKIKKDELKKSLHAIFSRFG--------QILDILVS--RSLKMRGQAFVIFKEVSSATNALRSMQGFPF   76 (97)
T ss_dssp             CCSEEEEESCCTTSCHHHHHHHHHHHHGGGS--------CEEEEECC--HHHHHTTCEEEEESSHHHHHHHHHHHTTCEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHhCC--------CEEEEEEE--cCCCcCcEEEEEeCCHHHHHHHHHHhCCCEE
Confidence            45789999999999999999    9999999        34567765  368889999999999999999997 799999


Q ss_pred             CCEEEEEEecch
Q psy16116        512 GIRYIELFRSTT  523 (612)
Q Consensus       512 ggR~IeV~~as~  523 (612)
                      +||.|.|..+..
T Consensus        77 ~g~~l~v~~a~~   88 (97)
T 1nu4_A           77 YDKPMRIQYAKT   88 (97)
T ss_dssp             TTEECEEEECSS
T ss_pred             CCcEEEEEEccC
Confidence            999999998754

>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}

Probab=99.43  E-value=2e-13  Score=131.09  Aligned_cols=79  Identities=15%  Similarity=0.191  Sum_probs=73.1

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRY  515 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~  515 (612)
                      ...+|||+|||++++++||+++|+.||        .+..|.|+.+.+|+++|||||+|.+.++|++||+ +|+..|+||.
T Consensus        87 ~~~~l~V~nLp~~~te~~L~~~F~~~G--------~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~  158 (177)
T 2f3j_A           87 TGAKLLVSNLDFGVSDADIQELFAEFG--------TLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRP  158 (177)
T ss_dssp             TCEEEEEECCCSCCCHHHHHHHHHHTS--------CCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSB
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcC--------CeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEE
Confidence            467899999999999999999999999        4567999999899999999999999999999997 7999999999


Q ss_pred             EEEEecch
Q psy16116        516 IELFRSTT  523 (612)
Q Consensus       516 IeV~~as~  523 (612)
                      |.|..+..
T Consensus       159 l~V~~a~~  166 (177)
T 2f3j_A          159 MDIQLVAS  166 (177)
T ss_dssp             CEEEEESS
T ss_pred             EEEEEecC
Confidence            99998754

>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.43  E-value=1.4e-13  Score=124.77  Aligned_cols=75  Identities=21%  Similarity=0.239  Sum_probs=65.5

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hC--CcccCC
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KH--KESIGI  513 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~--~~~igg  513 (612)
                      ...+|||+|||++++|+||+++|+.||        .+..|+|+.+     ||||||+|++.++|++|++ ++  +..++|
T Consensus        30 ps~~LfVgNLp~~vte~dL~~lF~~fG--------~V~~v~i~~~-----kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~G   96 (119)
T 2ad9_A           30 PSRVIHIRKLPIDVTEGEVISLGLPFG--------KVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRG   96 (119)
T ss_dssp             CCSEEEEESCCTTCCHHHHHHHHTTTS--------CCCEEEEEGG-----GTEEEEECSCHHHHHHHHHHHHHHCCCBTT
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcC--------CEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhccCCceECC
Confidence            467899999999999999999999999        4466888854     7999999999999999997 44  468999


Q ss_pred             EEEEEEecchH
Q psy16116        514 RYIELFRSTTA  524 (612)
Q Consensus       514 R~IeV~~as~~  524 (612)
                      |.|.|..+..+
T Consensus        97 r~l~V~~a~~k  107 (119)
T 2ad9_A           97 QPIYIQFSNHK  107 (119)
T ss_dssp             BCCEEEECSSS
T ss_pred             eEEEEEEccCC
Confidence            99999987643

>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}

Probab=99.43  E-value=2e-13  Score=116.40  Aligned_cols=76  Identities=16%  Similarity=0.084  Sum_probs=60.8

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCcccCCEEE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALSKHKESIGIRYI  516 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~~~~~~iggR~I  516 (612)
                      ...+|||+|||+++|+++|+++|+.||        .+.+|+|+.+    +||||||+|.+.++|+++. .....++||.|
T Consensus        10 ~~~~l~V~~Lp~~~te~~L~~~F~~~G--------~i~~v~i~~~----srGfaFV~F~~~~~A~~~~-~~~~~~~g~~v   76 (89)
T 3d2w_A           10 HGSKVFVGRCTEDMTAEELQQFFCQYG--------EVVDVFIPKP----FRAFAFVTFADDKVAQSLC-GEDLIIKGISV   76 (89)
T ss_dssp             -CCEEEEESCCTTCCHHHHHHHHTTTS--------CEEEEECCSS----CCSEEEEEESCHHHHHHHT-TCEEEETTEEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHhccC--------CEEEEEEeeC----CCCEEEEEECCHHHHHHHc-CCCcccCCEEE
Confidence            457899999999999999999999999        4567888864    8899999999999999532 22344679999


Q ss_pred             EEEecchHH
Q psy16116        517 ELFRSTTAE  525 (612)
Q Consensus       517 eV~~as~~e  525 (612)
                      .|..+..+.
T Consensus        77 ~v~~a~~k~   85 (89)
T 3d2w_A           77 HISNAEPKH   85 (89)
T ss_dssp             EEEECC---
T ss_pred             EEEEcCCCC
Confidence            999886543

>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.43  E-value=1.8e-13  Score=117.60  Aligned_cols=75  Identities=12%  Similarity=0.146  Sum_probs=65.2

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRY  515 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~  515 (612)
                      ...+|||+|||+++++++|+++|+.||    .|    . +.++.   ++++|||||+|.+.++|++|++ +|+..++||.
T Consensus        18 ~~~~l~V~nL~~~~t~~~l~~~F~~~G----~v----~-~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~   85 (97)
T 2e5j_A           18 LAADVYVGNLPRDARVSDLKRALRELG----SV----P-LRLTW---QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDT   85 (97)
T ss_dssp             CCCEEEEECCCTTCCHHHHHHHHHHTT----CC----C-SEEEE---ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSC
T ss_pred             CCCEEEEeCCCCcCcHHHHHHHHHhcC----CE----E-EEEEc---CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence            457899999999999999999999999    33    2 45553   4789999999999999999995 7999999999


Q ss_pred             EEEEecch
Q psy16116        516 IELFRSTT  523 (612)
Q Consensus       516 IeV~~as~  523 (612)
                      |.|..+..
T Consensus        86 l~V~~a~~   93 (97)
T 2e5j_A           86 LRVALARQ   93 (97)
T ss_dssp             CEEEECCC
T ss_pred             EEEEEcCC
Confidence            99988753

>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.42  E-value=3.5e-13  Score=114.10  Aligned_cols=71  Identities=21%  Similarity=0.224  Sum_probs=64.2

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRY  515 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~  515 (612)
                      ...+|||+|||+++++++|+++|+.||        .+..|+++       +|||||+|.+.++|++|++ +|+..++||.
T Consensus         7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G--------~i~~v~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~   71 (90)
T 2dnq_A            7 GMVKLFIGNLPREATEQEIRSLFEQYG--------KVLECDII-------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVN   71 (90)
T ss_dssp             CCEEEEEESCCSSCCHHHHHHHHHTSS--------CEEEEEEE-------TTEEEEEESSHHHHHHHHHHHTTCBCSSCB
T ss_pred             CCeEEEEeCCCCCCCHHHHHHHHHhCC--------CEEEEEEE-------CCEEEEEECCHHHHHHHHHHhcCCccCCcE
Confidence            457899999999999999999999999        44668876       6899999999999999995 7999999999


Q ss_pred             EEEEecc
Q psy16116        516 IELFRST  522 (612)
Q Consensus       516 IeV~~as  522 (612)
                      |.|..+.
T Consensus        72 l~v~~a~   78 (90)
T 2dnq_A           72 INVEASK   78 (90)
T ss_dssp             CEEECSS
T ss_pred             EEEEECC
Confidence            9998765

>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}

Probab=99.14  E-value=1.3e-14  Score=128.73  Aligned_cols=80  Identities=21%  Similarity=0.221  Sum_probs=71.2

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCcee--------EEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-h
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEG--------VLFVKKP-DGKATGDAFVLFEKEEEADKALS-K  506 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~--------I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~  506 (612)
                      ...+|||+|||+++++++|+++|+.||        .+..        |+|+.|+ +|+++|||||+|.+.++|++||+ +
T Consensus         6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G--------~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l   77 (116)
T 2lcw_A            6 DNNTIFVQGLGENVTIESVADYFKQIG--------IIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWF   77 (116)
Confidence            346799999999999999999999999        3345        7888885 69999999999999999999997 7


Q ss_pred             CCcccCCEEEEEEecchH
Q psy16116        507 HKESIGIRYIELFRSTTA  524 (612)
Q Consensus       507 ~~~~iggR~IeV~~as~~  524 (612)
                      |+..++||.|.|..+..+
T Consensus        78 ~g~~~~g~~l~V~~a~~~   95 (116)
T 2lcw_A           78 DGKEFSGNPIKVSFATRR   95 (116)
Confidence            999999999999887644

>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.42  E-value=1.2e-13  Score=120.66  Aligned_cols=80  Identities=29%  Similarity=0.387  Sum_probs=66.4

Q ss_pred             cceecCCCHHHHHhhHhhcccccC-eee-EEEeeCCCCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccCccch
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQVLG-LGG-VALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGEDF  418 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~~~-v~~-V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~~~e~  418 (612)
                      +++|+|||++.++++|+++|...+ +.+ |+|+.+.+|+++|||||+|++.++|++||++++..|+||.|+|..++..++
T Consensus        17 ~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~~~~~~~~   96 (104)
T 1wg5_A           17 FVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEV   96 (104)
T ss_dssp             EEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEEECTTTS
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEEECCHHHH
Confidence            555777777777777777766533 544 888888889999999999999999999999999999999999999887766


Q ss_pred             hh
Q psy16116        419 IN  420 (612)
Q Consensus       419 ~~  420 (612)
                      .+
T Consensus        97 ~~   98 (104)
T 1wg5_A           97 RT   98 (104)
T ss_dssp             CC
T ss_pred             HH
Confidence            54

>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}

Probab=99.42  E-value=4.7e-13  Score=122.94  Aligned_cols=80  Identities=9%  Similarity=-0.020  Sum_probs=68.6

Q ss_pred             cEEEEeCC----CCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCC----HHH----HHHHHH
Q psy16116        439 VIIRMRGL----PYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEK----EEE----ADKALS  505 (612)
Q Consensus       439 ~~VfV~nL----P~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s----~ed----A~kAL~  505 (612)
                      ..|||+||    ||++++++|++||+.||        .+.++.++.|+ +|+++|||||+|.+    +++    |.+|++
T Consensus         3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fG--------eV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~   74 (136)
T 2j8a_A            3 CEIVVYPAQDSTTTNIQDISIKNYFKKYG--------EISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVR   74 (136)
T ss_dssp             CEEEEEESSSSCCCCCCHHHHHHHHHTTS--------CCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHH
T ss_pred             cEEEEeCCCCCCCCCCCHHHHHHHHHhcC--------CeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHH
Confidence            35999999    99999999999999999        55789999998 79999999999996    433    888987


Q ss_pred             ---hCCcccCCEEEEEEecchHHH
Q psy16116        506 ---KHKESIGIRYIELFRSTTAEV  526 (612)
Q Consensus       506 ---~~~~~iggR~IeV~~as~~e~  526 (612)
                         +++..|+||.|+|........
T Consensus        75 ~~~lng~~I~Gr~irV~ln~~g~~   98 (136)
T 2j8a_A           75 KHESSGCFIMGFKFEVILNKHSIL   98 (136)
T ss_dssp             HTTTTCEEETTEEEEEEECCTTHH
T ss_pred             HhhhcCCeecCcEEEEEECcccHH
Confidence               499999999999998754433

>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}

Probab=99.42  E-value=2.7e-13  Score=123.93  Aligned_cols=78  Identities=10%  Similarity=0.182  Sum_probs=67.4

Q ss_pred             cccEEEEeCCCCCCCHHHHH----HHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCccc
Q psy16116        437 AQVIIRMRGLPYECTAKQVI----DFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESI  511 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLr----efF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~i  511 (612)
                      ...+|||+|||+++++++|+    ++|+.||    .|    ..|.+  ..+|+++|||||+|.+.++|++|++ +|+..+
T Consensus        28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G----~I----~~v~i--~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l   97 (127)
T 2a3j_A           28 PSQVVLITNINPEVPKEKLQALLYALASSQG----DI----LDIVV--DLSDDNSGKAYIVFATQESAQAFVEAFQGYPF   97 (127)
T ss_dssp             CCSEEEEESCCTTSCHHHHHHHHHHHHHHHS----CE----EEEEE--CCCCSSCCCEEEEESSHHHHHHHHHHSTTCCC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHhccCC----Ce----EEEEe--ccCCCcCCEEEEEECCHHHHHHHHHHHCCCEe
Confidence            45789999999999999976    6999999    44    44655  3578999999999999999999995 799999


Q ss_pred             CCEEEEEEecchH
Q psy16116        512 GIRYIELFRSTTA  524 (612)
Q Consensus       512 ggR~IeV~~as~~  524 (612)
                      .||.|.|..+..+
T Consensus        98 ~gr~l~V~~a~~~  110 (127)
T 2a3j_A           98 QGNPLVITFSETP  110 (127)
T ss_dssp             TTSCCEEEECCCC
T ss_pred             CCCEEEEEEccCc
Confidence            9999999988543

>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.42  E-value=2.7e-13  Score=119.64  Aligned_cols=74  Identities=18%  Similarity=0.156  Sum_probs=63.9

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hC--CcccCC
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KH--KESIGI  513 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~--~~~igg  513 (612)
                      ...+|||+|||++++++||+++|+.||        .+..|.++.     .||||||+|.+.++|++|++ ++  +..++|
T Consensus        14 p~~~l~V~nLp~~~te~~L~~~F~~fG--------~V~~v~i~~-----~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~G   80 (104)
T 1wex_A           14 VSPVVHVRGLCESVVEADLVEALEKFG--------TICYVMMMP-----FKRQALVEFENIDSAKECVTFAADVPVYIAG   80 (104)
T ss_dssp             CCSEEEEESCCSSCCHHHHHHHHTTTS--------CEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHHHSCCBSSS
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhCC--------CEEEEEEEC-----CCCEEEEEECCHHHHHHHHHHhccCCceECC
Confidence            457899999999999999999999999        445688774     37999999999999999997 44  456999


Q ss_pred             EEEEEEecch
Q psy16116        514 RYIELFRSTT  523 (612)
Q Consensus       514 R~IeV~~as~  523 (612)
                      |.|.|..+..
T Consensus        81 r~l~V~~a~~   90 (104)
T 1wex_A           81 QQAFFNYSTS   90 (104)
T ss_dssp             SBCEEEECSS
T ss_pred             EEEEEEEccC
Confidence            9999998764

>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.41  E-value=2.5e-13  Score=119.78  Aligned_cols=80  Identities=15%  Similarity=0.210  Sum_probs=66.9

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRY  515 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~  515 (612)
                      ...+|||+|||+++++++|+++|+.||    .|.+....+.+.   +|+++|||||+|.+.++|++||+ +|+..++||.
T Consensus        24 ~~~~l~V~nLp~~~t~~~l~~~f~~~G----~v~~~~~~~~~~---~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~   96 (115)
T 2cpx_A           24 PNKVLYLKNLSPRVTERDLVSLFARFQ----EKKGPPIQFRMM---TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKI   96 (115)
T ss_dssp             CCSEEEEECCCTTCCHHHHHHHTHHHH----HSSSSCCEEEEE---CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCB
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHhC----CccceEEEEEcC---CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcE
Confidence            457899999999999999999999999    331101223333   88999999999999999999996 7999999999


Q ss_pred             EEEEecch
Q psy16116        516 IELFRSTT  523 (612)
Q Consensus       516 IeV~~as~  523 (612)
                      |.|..+..
T Consensus        97 l~v~~a~~  104 (115)
T 2cpx_A           97 LVIEFGKN  104 (115)
T ss_dssp             CEEEECCC
T ss_pred             EEEEEccC
Confidence            99998753

>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.41  E-value=5.4e-13  Score=111.21  Aligned_cols=72  Identities=17%  Similarity=0.155  Sum_probs=64.6

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-h-CCcccCCE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-K-HKESIGIR  514 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~-~~~~iggR  514 (612)
                      ...+|||+|||+++++++|+++|+.||        .+..|+++.     ++|||||+|.+.++|++|++ + ++..++||
T Consensus        11 ~~~~l~V~~l~~~~t~~~l~~~f~~~G--------~i~~~~~~~-----~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~   77 (85)
T 2ytc_A           11 TITTLYVGGLGDTITETDLRNHFYQFG--------EIRTITVVQ-----RQQCAFIQFATRQAAEVAAEKSFNKLIVNGR   77 (85)
T ss_dssp             SCCCEEEECCTTTSCHHHHHHHHHTTS--------CEEEEEEEG-----GGTEEEEEESSHHHHHHHHHTTTTTCEETTE
T ss_pred             CccEEEEcCCCCCCCHHHHHHHHHhCC--------CEeEEEEEC-----CCCEEEEEECCHHHHHHHHHHhcCCeeECCC
Confidence            456799999999999999999999999        456788874     57999999999999999998 6 99999999


Q ss_pred             EEEEEec
Q psy16116        515 YIELFRS  521 (612)
Q Consensus       515 ~IeV~~a  521 (612)
                      .|.|..+
T Consensus        78 ~l~v~~a   84 (85)
T 2ytc_A           78 RLNVKWG   84 (85)
T ss_dssp             ECCEEEC
T ss_pred             EEEEEec
Confidence            9999875

>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A

Probab=99.41  E-value=2.9e-13  Score=113.18  Aligned_cols=78  Identities=17%  Similarity=0.221  Sum_probs=62.2

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcC----CCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCcccC
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAG----TENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALSKHKESIG  512 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~----Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~~~~~~ig  512 (612)
                      ..++|||+|||+++++++|+++|+.|    |+.... -+.+..+++.     +.+|||||+|.+.++|++|+.+|+..++
T Consensus         5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~-~~~v~~~~~~-----~~kg~afV~f~~~~~a~~A~~l~g~~~~   78 (87)
T 2hzc_A            5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAP-GNPVLAVQIN-----QDKNFAFLEFRSVDETTQAMAFDGIIFQ   78 (87)
T ss_dssp             GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSS-SCSEEEEEEC-----SSSSEEEEEESSHHHHHHHGGGTTCEET
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCC-CCcceEEEec-----CCCcEEEEEcCCHHHHHHHHhcCCCEEC
Confidence            34789999999999999999999999    620000 0023456665     3489999999999999999988999999


Q ss_pred             CEEEEEEe
Q psy16116        513 IRYIELFR  520 (612)
Q Consensus       513 gR~IeV~~  520 (612)
                      ||.|.|..
T Consensus        79 g~~l~V~r   86 (87)
T 2hzc_A           79 GQSLKIRR   86 (87)
T ss_dssp             TEECEEEC
T ss_pred             CeEEEEeC
Confidence            99999864

>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.41  E-value=3.9e-13  Score=117.87  Aligned_cols=74  Identities=15%  Similarity=0.163  Sum_probs=66.6

Q ss_pred             CcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCE
Q psy16116        436 GAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIR  514 (612)
Q Consensus       436 ~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR  514 (612)
                      ...++|||+|||+++++++|+++|+.||        .+..|+|+.+     +|||||+|.+.++|++|++ +++..++||
T Consensus        23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G--------~i~~v~i~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~g~   89 (109)
T 1x4g_A           23 PKNCTVYCGGIASGLTDQLMRQTFSPFG--------QIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTIEGH   89 (109)
T ss_dssp             SSCCEEEEECCSSCCCHHHHHHHHHHHS--------CEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHhcC--------CeEEEEEeCC-----CCEEEEEECCHHHHHHHHHHcCCCEECCc
Confidence            3567899999999999999999999999        4567888865     7999999999999999995 799999999


Q ss_pred             EEEEEecc
Q psy16116        515 YIELFRST  522 (612)
Q Consensus       515 ~IeV~~as  522 (612)
                      .|.|..+.
T Consensus        90 ~l~v~~a~   97 (109)
T 1x4g_A           90 VVKCYWGK   97 (109)
T ss_dssp             ECEEECCC
T ss_pred             EEEEEecC
Confidence            99998765

>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A

Probab=99.41  E-value=6.2e-13  Score=114.91  Aligned_cols=71  Identities=13%  Similarity=0.152  Sum_probs=64.0

Q ss_pred             cccEEEEeCCCC-CCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCE
Q psy16116        437 AQVIIRMRGLPY-ECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIR  514 (612)
Q Consensus       437 ~~~~VfV~nLP~-s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR  514 (612)
                      ...+|||+|||+ ++++++|+++|+.||        .+..|++       ++|||||+|.+.++|++|++ +|+..++||
T Consensus        21 ~~~~l~V~nLp~~~~t~~~L~~~F~~~G--------~v~~v~i-------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~   85 (97)
T 2xnq_A           21 MKSRLFIGNLPLKNVSKEDLFRIFSPYG--------HIMQINI-------KNAFGFIQFDNPQSVRDAIEXESQEMNFGK   85 (97)
T ss_dssp             TTCEEEEESCCSSCCCHHHHHHHHGGGS--------CEEEEEE-------CSSEEEEEESSHHHHHHHHHHHTTSEETTE
T ss_pred             CCCEEEEeCCCcccCCHHHHHHHHHhcC--------CEEEEEE-------eCCEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence            567899999999 999999999999999        3456777       37999999999999999997 899999999


Q ss_pred             EEEEEecc
Q psy16116        515 YIELFRST  522 (612)
Q Consensus       515 ~IeV~~as  522 (612)
                      .|.|..+.
T Consensus        86 ~l~V~~a~   93 (97)
T 2xnq_A           86 KLILEVSS   93 (97)
T ss_dssp             ECEEEECC
T ss_pred             EEEEEecC
Confidence            99998875

>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A

Probab=99.41  E-value=1.1e-13  Score=128.09  Aligned_cols=81  Identities=25%  Similarity=0.344  Sum_probs=68.1

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cC---eeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccCcc
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LG---LGGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGE  416 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~---v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~~~  416 (612)
                      +++|+|||++.++++|+++|.. +.   +.+|+|+++++|+++|||||+|++.++|++||++|+..|+||.|+|..++.+
T Consensus        46 ~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i~V~~a~~~  125 (136)
T 2hgl_A           46 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEVFKSHRT  125 (136)
T ss_dssp             EEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHTTTEEESSSSEEEEEECCHH
T ss_pred             EEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCEECCEEEEEEECChH
Confidence            4557777777777777776665 33   6789999999999999999999999999999999999999999999998877


Q ss_pred             chhhc
Q psy16116        417 DFINV  421 (612)
Q Consensus       417 e~~~~  421 (612)
                      ++.+.
T Consensus       126 e~~~~  130 (136)
T 2hgl_A          126 EMDWV  130 (136)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            65443

>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.41  E-value=5e-13  Score=114.66  Aligned_cols=73  Identities=15%  Similarity=0.125  Sum_probs=64.9

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccC--C
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIG--I  513 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~ig--g  513 (612)
                      ...+|||+|||+++++++|+++|+.||        .+..|.+..+     +|||||+|.+.++|++|++ +|+..++  |
T Consensus        16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G--------~v~~v~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~~g   82 (97)
T 1why_A           16 PTTRLWVGGLGPNTSLAALAREFDRFG--------SIRTIDHVKG-----DSFAYIQYESLDAAQAACAKMRGFPLGGPD   82 (97)
T ss_dssp             CCSCEEEECCCSSCCHHHHHHHHHTTS--------CEEEEEECSS-----SCCEEEEESSHHHHHHHHHHHTTCBCSSSS
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcC--------CeeEEEEeCC-----CCEEEEEECCHHHHHHHHHHHCCCEeCCCC
Confidence            456799999999999999999999999        4466877643     7899999999999999997 7999999  9


Q ss_pred             EEEEEEecc
Q psy16116        514 RYIELFRST  522 (612)
Q Consensus       514 R~IeV~~as  522 (612)
                      |.|.|..+.
T Consensus        83 ~~l~V~~a~   91 (97)
T 1why_A           83 RRLRVDFAK   91 (97)
T ss_dssp             CBCEEEECC
T ss_pred             cEEEEEECC
Confidence            999998875

>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.40  E-value=1.3e-13  Score=123.39  Aligned_cols=80  Identities=23%  Similarity=0.365  Sum_probs=66.9

Q ss_pred             cceecCCCHHHHHhhHhhcccccC----eeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccCcc
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQVLG----LGGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGE  416 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~~~----v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~~~  416 (612)
                      +++|+|||++.++++|++||...+    +.+|+|+++++|+++|||||+|++.++|++||++|+..|+||.|+|..++.+
T Consensus        19 ~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a~~~   98 (118)
T 2db1_A           19 VVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVFKSHRT   98 (118)
T ss_dssp             EEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEEEEEECHH
T ss_pred             EEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCHH
Confidence            455777777777666666665422    6899999999999999999999999999999999999999999999998877


Q ss_pred             chhh
Q psy16116        417 DFIN  420 (612)
Q Consensus       417 e~~~  420 (612)
                      ++.+
T Consensus        99 ~~~~  102 (118)
T 2db1_A           99 EMDW  102 (118)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6544

>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.40  E-value=3e-13  Score=116.43  Aligned_cols=74  Identities=16%  Similarity=0.165  Sum_probs=65.7

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRY  515 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~  515 (612)
                      ...+|||+|||+++++++|+++|+.||        .+..|++..     .+|||||+|.+.++|++|++ +|+..++||.
T Consensus        14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G--------~i~~v~~~~-----~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~   80 (99)
T 2cpj_A           14 QRSRLFVGNLPPDITEEEMRKLFEKYG--------KAGEVFIHK-----DKGFGFIRLETRTLAEIAKVELDNMPLRGKQ   80 (99)
T ss_dssp             CTTEEEEESCCTTCCHHHHHHHTSTTC--------CCSEEEEET-----TTTEEEEECSSSHHHHHHHHHHTTCCBTTBC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHhhcC--------CeEEEEEec-----CCCEEEEEECCHHHHHHHHHHhCCCEeCCce
Confidence            457899999999999999999999999        345688873     47999999999999999995 7999999999


Q ss_pred             EEEEecch
Q psy16116        516 IELFRSTT  523 (612)
Q Consensus       516 IeV~~as~  523 (612)
                      |.|..+..
T Consensus        81 l~v~~a~~   88 (99)
T 2cpj_A           81 LRVRFACH   88 (99)
T ss_dssp             CEEEESSC
T ss_pred             EEEEEcCC
Confidence            99988753

>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A

Probab=99.39  E-value=6.4e-13  Score=117.30  Aligned_cols=73  Identities=25%  Similarity=0.309  Sum_probs=65.5

Q ss_pred             CcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCE
Q psy16116        436 GAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIR  514 (612)
Q Consensus       436 ~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR  514 (612)
                      ....+|||+|||+++++++|+++|+.||        .+..|.++       +|||||+|.+.++|++|++ +|+..++||
T Consensus        29 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G--------~i~~v~i~-------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~   93 (108)
T 2jvo_A           29 LSNTRLFVRPFPLDVQESELNEIFGPFG--------PMKEVKIL-------NGFAFVEFEEAESAAKAIEEVHGKSFANQ   93 (108)
T ss_dssp             CSCSEEEECSSCTTCCHHHHHHHHTTTS--------CCCEEEEE-------TTEEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred             CCCCEEEEECCCCCCCHHHHHHHHHhcC--------CEEEEEEE-------CCEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence            3567899999999999999999999999        34568876       7999999999999999996 799999999


Q ss_pred             EEEEEecch
Q psy16116        515 YIELFRSTT  523 (612)
Q Consensus       515 ~IeV~~as~  523 (612)
                      .|.|..+..
T Consensus        94 ~l~V~~a~~  102 (108)
T 2jvo_A           94 PLEVVYSKL  102 (108)
T ss_dssp             ECEEESCSC
T ss_pred             EEEEEEecC
Confidence            999988753

>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.39  E-value=1.2e-12  Score=112.61  Aligned_cols=71  Identities=21%  Similarity=0.181  Sum_probs=62.7

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcC--CCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCC
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAG--TENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGI  513 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~--Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~igg  513 (612)
                      ...+|||+|||+++++++|+++|+.|  |        .+..|++       .+|||||+|.+.++|++||+ +|+..++|
T Consensus        14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~g--------~v~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~g   78 (99)
T 2cpd_A           14 SVKILYVRNLMLSTSEEMIEKEFNNIKPG--------AVERVKK-------IRDYAFVHFSNREDAVEAMKALNGKVLDG   78 (99)
T ss_dssp             CCCEEEEESCCTTCCHHHHHHHHHTTSTT--------CEEEEEE-------CSSEEEEEESSHHHHHHHHHHHSSEEETT
T ss_pred             CcCEEEEeCCCCCCCHHHHHHHHHhcCCc--------ceEEEEE-------eCCeEEEEeCCHHHHHHHHHHhCCCEeCC
Confidence            45789999999999999999999999  6        3345654       36899999999999999997 89999999


Q ss_pred             EEEEEEecc
Q psy16116        514 RYIELFRST  522 (612)
Q Consensus       514 R~IeV~~as  522 (612)
                      |.|.|..+.
T Consensus        79 ~~l~v~~a~   87 (99)
T 2cpd_A           79 SPIEVTLAK   87 (99)
T ss_dssp             EEEEEECCC
T ss_pred             cEEEEEECC
Confidence            999998765

>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.39  E-value=6.5e-13  Score=112.41  Aligned_cols=71  Identities=24%  Similarity=0.250  Sum_probs=63.7

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRY  515 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~  515 (612)
                      ...+|||+|||+++++++|+++|+.||        .+..|+++       +|||||+|.+.++|++|++ +|+..++||.
T Consensus         8 ~~~~l~V~nlp~~~t~~~l~~~F~~~G--------~v~~~~~~-------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~   72 (90)
T 2dnp_A            8 NTWKIFVGNVSAACTSQELRSLFERRG--------RVIECDVV-------KDYAFVHMEKEADAKAAIAQLNGKEVKGKR   72 (90)
T ss_dssp             CSCCEEEESCCTTCCHHHHHHHHHHHS--------CEEEEEEC-------SSCEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHcCC--------CEEEEEEE-------CCEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence            456799999999999999999999999        44668876       4599999999999999997 7999999999


Q ss_pred             EEEEecc
Q psy16116        516 IELFRST  522 (612)
Q Consensus       516 IeV~~as  522 (612)
                      |.|..+.
T Consensus        73 l~v~~a~   79 (90)
T 2dnp_A           73 INVELST   79 (90)
T ss_dssp             CEEEESC
T ss_pred             EEEEECC
Confidence            9999875

>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.39  E-value=5.5e-13  Score=113.89  Aligned_cols=72  Identities=21%  Similarity=0.235  Sum_probs=62.3

Q ss_pred             ccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHHhCCcccCCEEE
Q psy16116        438 QVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALSKHKESIGIRYI  516 (612)
Q Consensus       438 ~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~~~~~~iggR~I  516 (612)
                      ..+|||+|||+++++++|+++|+.||    .|    ..|  +.+. +|+   ||||+|.+.++|++||++|+..++||.|
T Consensus         8 ~~~l~V~nl~~~~t~~~l~~~F~~~G----~v----~~v--~~~~~~g~---~afV~f~~~~~a~~ai~l~g~~~~g~~l   74 (94)
T 2e5g_A            8 LRSVFVSGFPRGVDSAQLSEYFLAFG----PV----ASV--VMDKDKGV---FAIVEMGDVGAREAVLSQSQHSLGGHRL   74 (94)
T ss_dssp             CCEEEEECCCTTCCHHHHHHHGGGTS----CE----EEE--EECSSSCC---EEEEEESSHHHHHHHHTCSCCEETTEEC
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHhcC----Ce----EEE--EEcCCCCc---EEEEEECCHHHHHHHHhcCCeEECCEEE
Confidence            46899999999999999999999999    33    445  4454 555   9999999999999999999999999999


Q ss_pred             EEEecc
Q psy16116        517 ELFRST  522 (612)
Q Consensus       517 eV~~as  522 (612)
                      .|..+.
T Consensus        75 ~V~~a~   80 (94)
T 2e5g_A           75 RVRPRE   80 (94)
T ss_dssp             CCBCSC
T ss_pred             EEEECC
Confidence            997553

>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.38  E-value=4.1e-13  Score=114.14  Aligned_cols=73  Identities=18%  Similarity=0.155  Sum_probs=62.9

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCC-cccCCE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHK-ESIGIR  514 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~-~~iggR  514 (612)
                      ...+|||+|||+++++++|+++|+.||    .|   +..+.+      +++|||||+|.+.++|++|++ +|+ ..++||
T Consensus         7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G----~v---v~~~~~------~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~   73 (93)
T 2cqh_A            7 GMNKLYIGNLSPAVTADDLRQLFGDRK----LP---LAGQVL------LKSGYAFVDYPDQNWAIRAIETLSGKVELHGK   73 (93)
T ss_dssp             CCCCEEEECCCTTCCHHHHHHHHHHTT----CC---CSSCEE------EETTEEEECCSCHHHHHHHHHHHTTTCEETTE
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHHcC----Cc---eEEEEE------cCCCEEEEEECCHHHHHHHHHHccCCeeECCE
Confidence            346799999999999999999999999    42   233444      368999999999999999996 799 999999


Q ss_pred             EEEEEecc
Q psy16116        515 YIELFRST  522 (612)
Q Consensus       515 ~IeV~~as  522 (612)
                      .|.|..+.
T Consensus        74 ~l~v~~a~   81 (93)
T 2cqh_A           74 IMEVDYSV   81 (93)
T ss_dssp             ECEEEECC
T ss_pred             EEEEEEcc
Confidence            99999875

>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.38  E-value=5.2e-13  Score=118.29  Aligned_cols=74  Identities=20%  Similarity=0.128  Sum_probs=65.6

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRY  515 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~  515 (612)
                      ..++|||+|||+++++++|+++|+.||        .+..|.|+     +++|||||+|.+.++|++|++ +|+..++||.
T Consensus         9 ~~~~l~V~nLp~~~te~~L~~~F~~~G--------~i~~v~i~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~   75 (111)
T 1whx_A            9 SKTVILAKNLPAGTLAAEIQETFSRFG--------SLGRVLLP-----EGGITAIVEFLEPLEARKAFRHLAYSKFHHVP   75 (111)
T ss_dssp             EEEEEEEESCCTTCCHHHHHHHHHTTS--------CEEEEECC-----SSSSCEEEEESCHHHHHHHHHHHTTCBSSSSB
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcC--------CEEEEEEe-----CCCCEEEEEeCCHHHHHHHHHHhCCCEECCeE
Confidence            356899999999999999999999999        34567765     377999999999999999996 7999999999


Q ss_pred             EEEEecch
Q psy16116        516 IELFRSTT  523 (612)
Q Consensus       516 IeV~~as~  523 (612)
                      |.|..+..
T Consensus        76 l~V~~a~~   83 (111)
T 1whx_A           76 LYLEWAPI   83 (111)
T ss_dssp             CEEEEEET
T ss_pred             EEEEECCC
Confidence            99998754

>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.38  E-value=3.1e-13  Score=119.14  Aligned_cols=73  Identities=14%  Similarity=0.163  Sum_probs=63.8

Q ss_pred             cccEEEEeCCCC-CCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hC--CcccC
Q psy16116        437 AQVIIRMRGLPY-ECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KH--KESIG  512 (612)
Q Consensus       437 ~~~~VfV~nLP~-s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~--~~~ig  512 (612)
                      ...+|||+|||+ +++++||+++|+.||        .+..|+|+.+     +|||||+|++.++|++|++ ++  +..|+
T Consensus        14 p~~~l~V~nLp~~~~te~dL~~lF~~fG--------~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~   80 (102)
T 1x4d_A           14 TRRVVHIMDFQRGKNLRYQLLQLVEPFG--------VISNHLILNK-----INEAFIEMATTEDAQAAVDYYTTTPALVF   80 (102)
T ss_dssp             CCCEEEEESCCCSSSHHHHHHTTTGGGS--------CEEEEEECSS-----SSCEEEEESSHHHHHHHHHHHHHSCCEET
T ss_pred             CCCEEEEeCCCCCcCCHHHHHHHHHhcC--------CEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHHcCCCceEC
Confidence            467899999999 999999999999999        4567888753     5899999999999999996 45  45699


Q ss_pred             CEEEEEEecc
Q psy16116        513 IRYIELFRST  522 (612)
Q Consensus       513 gR~IeV~~as  522 (612)
                      ||.|.|..+.
T Consensus        81 Gr~l~V~~a~   90 (102)
T 1x4d_A           81 GKPVRVHLSQ   90 (102)
T ss_dssp             TEECEEEEEC
T ss_pred             CcEEEEEECC
Confidence            9999999875

>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.38  E-value=1.6e-12  Score=110.44  Aligned_cols=71  Identities=21%  Similarity=0.213  Sum_probs=63.8

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRY  515 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~  515 (612)
                      ...+|||+|||+++++++|+++|+.||        .+..|+++       +|||||+|.+.++|++|++ +|+..++||.
T Consensus         9 ~~~~l~V~nLp~~~t~~~l~~~F~~~G--------~v~~v~~~-------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~   73 (92)
T 2dgt_A            9 ASTKLHVGNISPTCTNQELRAKFEEYG--------PVIECDIV-------KDYAFVHMERAEDAVEAIRGLDNTEFQGKR   73 (92)
T ss_dssp             SSEEEEEESCCSSCCHHHHHHHHHTTS--------CCCEEEEC-------SSEEEEEESCHHHHHHHHHHHTTEEETTEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcC--------CeEEEEEE-------CCEEEEEECCHHHHHHHHHHhCCCeeCCcE
Confidence            457899999999999999999999999        34568876       4499999999999999996 7999999999


Q ss_pred             EEEEecc
Q psy16116        516 IELFRST  522 (612)
Q Consensus       516 IeV~~as  522 (612)
                      |.|..+.
T Consensus        74 l~V~~a~   80 (92)
T 2dgt_A           74 MHVQLST   80 (92)
T ss_dssp             EEEEESS
T ss_pred             EEEEEcc
Confidence            9999875

>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}

Probab=99.38  E-value=4.8e-13  Score=122.88  Aligned_cols=80  Identities=16%  Similarity=0.167  Sum_probs=66.6

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccC----ceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCccc
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDG----EEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESI  511 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~----v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~i  511 (612)
                      ...+|||+|||+++++++|+++|+.||    .|...    +..|++  ..+|+++|||||+|.+.++|.+||+ +|+..+
T Consensus        44 ~~~~l~V~nLp~~~te~~L~~~F~~~G----~i~~~~~~~~~di~~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~  117 (143)
T 3egn_A           44 PNCRIYVKNLAKHVQEKDLKYIFGRYV----DFSSETQRIMFDIRL--MKEGRMKGQAFIGLPNEKAAAKALKEANGYVL  117 (143)
T ss_dssp             CCSEEEEEEECTTCCHHHHHHHHGGGC----CTTCHHHHHHCEEEE--EEETTTEEEEEEECSSHHHHHHHHHHHTTBEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHhC----CcccccccceeeEEe--ccCCCcccEEEEEeCCHHHHHHHHHHhCCCEe
Confidence            457899999999999999999999999    33210    011333  2479999999999999999999997 899999


Q ss_pred             CCEEEEEEecc
Q psy16116        512 GIRYIELFRST  522 (612)
Q Consensus       512 ggR~IeV~~as  522 (612)
                      +||.|.|..+.
T Consensus       118 ~g~~l~V~~a~  128 (143)
T 3egn_A          118 FGKPMVVQFAR  128 (143)
T ss_dssp             TTEECEEEECC
T ss_pred             CCcEEEEEECC
Confidence            99999999874

>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A

Probab=99.38  E-value=7.7e-13  Score=114.84  Aligned_cols=72  Identities=19%  Similarity=0.195  Sum_probs=64.1

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRY  515 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~  515 (612)
                      ...+|||+|||+++++++|+++|+.||        .+..|+++       +|||||+|.+.++|++||+ +|+..|+||.
T Consensus        10 ~~~~l~V~nl~~~~t~~~l~~~F~~~G--------~i~~v~~~-------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~   74 (103)
T 2dgu_A           10 KVKVLFVRNLANTVTEEILEKAFSQFG--------KLERVKKL-------KDYAFIHFDERDGAVKAMEEMNGKDLEGEN   74 (103)
T ss_dssp             CCCCEEEECCCTTCCHHHHHHHHHHHS--------CEEEEEEC-------SSCEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcC--------CEEEEEEE-------CCEEEEEeCCHHHHHHHHHHHCCCccCCCE
Confidence            346799999999999999999999999        34567775       5699999999999999997 7999999999


Q ss_pred             EEEEecch
Q psy16116        516 IELFRSTT  523 (612)
Q Consensus       516 IeV~~as~  523 (612)
                      |.|..+..
T Consensus        75 l~v~~a~~   82 (103)
T 2dgu_A           75 IEIVFAKP   82 (103)
T ss_dssp             EEEEECCC
T ss_pred             EEEEEcCC
Confidence            99998754

>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A

Probab=99.38  E-value=7.3e-13  Score=111.91  Aligned_cols=71  Identities=18%  Similarity=0.211  Sum_probs=63.0

Q ss_pred             ccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEEE
Q psy16116        438 QVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRYI  516 (612)
Q Consensus       438 ~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~I  516 (612)
                      .++|||+|||++++++||+++|+.|.     |    ..+++.     +++|||||+|.+.++|++|++ +|+..++||.|
T Consensus         5 ~~~l~V~nLp~~~t~~~l~~~F~~~~-----v----~~~~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l   70 (88)
T 1wg1_A            5 SSGILVKNLPQDSNCQEVHDLLKDYD-----L----KYCYVD-----RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDL   70 (88)
T ss_dssp             CCCEEEESCCSSCCHHHHHHHTCSSC-----C----CCEEEE-----GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEE
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHhhCC-----e----EEEEEe-----CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEE
Confidence            46799999999999999999999985     2    346663     789999999999999999997 89999999999


Q ss_pred             EEEecc
Q psy16116        517 ELFRST  522 (612)
Q Consensus       517 eV~~as  522 (612)
                      .|..+.
T Consensus        71 ~V~~a~   76 (88)
T 1wg1_A           71 IVQLQP   76 (88)
T ss_dssp             EEEECC
T ss_pred             EEEEcC
Confidence            998864

>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.37  E-value=6.9e-13  Score=117.66  Aligned_cols=75  Identities=17%  Similarity=0.153  Sum_probs=61.5

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-C---CCceeEEEEEeCCHHHHHHHHHhCCcccC
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-D---GKATGDAFVLFEKEEEADKALSKHKESIG  512 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~---GrskG~AFV~F~s~edA~kAL~~~~~~ig  512 (612)
                      ..++|||+|||+++++++|+++|+.||        .+. +.++.+. +   |+++|||||+|.+.++|++||+.- ..++
T Consensus         7 ~~~~lfVgnLp~~~te~~L~~~F~~~G--------~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~-~~~~   76 (114)
T 2dnl_A            7 GSRKVFVGGLPPDIDEDEITASFRRFG--------PLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC-LEED   76 (114)
T ss_dssp             CCCCEEEECCCTTCCHHHHHHHTTTTC--------CCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS-EEET
T ss_pred             CCCEEEEcCCCCCCCHHHHHHHHHhcC--------CEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh-hhcC
Confidence            346799999999999999999999999        334 6777665 3   799999999999999999999742 2377


Q ss_pred             CEEEEEEec
Q psy16116        513 IRYIELFRS  521 (612)
Q Consensus       513 gR~IeV~~a  521 (612)
                      |+.+.+..+
T Consensus        77 G~~~~~~~~   85 (114)
T 2dnl_A           77 GKLYLCVSS   85 (114)
T ss_dssp             TEEEEEECC
T ss_pred             CcEEEeccC
Confidence            777776543

>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.36  E-value=5.1e-13  Score=119.84  Aligned_cols=74  Identities=16%  Similarity=0.193  Sum_probs=64.4

Q ss_pred             CcccEEEEeCCCCC-CCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-h--CCccc
Q psy16116        436 GAQVIIRMRGLPYE-CTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-K--HKESI  511 (612)
Q Consensus       436 ~~~~~VfV~nLP~s-~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~--~~~~i  511 (612)
                      ....+|||+|||++ ++++||+++|+.||        .+..|+|+     ++||||||+|.+.++|++|++ +  ++..|
T Consensus        23 ~p~~~l~V~NLp~~~~te~~L~~lF~~fG--------~V~~v~i~-----~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l   89 (112)
T 1x4f_A           23 ELGRVIHLSNLPHSGYSDSAVLKLAEPYG--------KIKNYILM-----RMKSQAFIEMETREDAMAMVDHCLKKALWF   89 (112)
T ss_dssp             CCCCEEEEESCCCSSCCSHHHHTTTTTTS--------CCSEEEEE-----TTTTEEEEECSSHHHHHHHHHHHHHSCCCS
T ss_pred             CCCCEEEEeCCCCccCCHHHHHHHHHhcC--------CEEEEEEe-----cCCCEEEEEECCHHHHHHHHHHhccCCceE
Confidence            35678999999998 99999999999999        34568886     468999999999999999996 4  45679


Q ss_pred             CCEEEEEEecc
Q psy16116        512 GIRYIELFRST  522 (612)
Q Consensus       512 ggR~IeV~~as  522 (612)
                      +||.|.|..+.
T Consensus        90 ~Gr~l~V~~a~  100 (112)
T 1x4f_A           90 QGRCVKVDLSE  100 (112)
T ss_dssp             SSSCCEEEEEC
T ss_pred             CCEEEEEEECc
Confidence            99999999875

>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}

Probab=99.35  E-value=9.1e-13  Score=113.10  Aligned_cols=71  Identities=13%  Similarity=0.150  Sum_probs=63.6

Q ss_pred             cccEEEEeCCCC-CCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCE
Q psy16116        437 AQVIIRMRGLPY-ECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIR  514 (612)
Q Consensus       437 ~~~~VfV~nLP~-s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR  514 (612)
                      ...+|||+|||+ ++++++|+++|+.||        .+..|+|.       +|||||+|.+.++|++|++ +|+..++||
T Consensus         9 ~~~~l~V~nlp~~~~t~~~l~~~F~~~G--------~v~~v~i~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~   73 (96)
T 2kvi_A            9 PKSRLFIGNLPLKNVSKEDLFRIFSPYG--------HIMQINIK-------NAFGFIQFDNPQSVRDAIECESQEMNFGK   73 (96)
T ss_dssp             CCEEEEEESSTTSCCCHHHHHHHHTTTC--------CCCEEEEE-------TTEEEEEESCHHHHHHHHHHHTCSSCBTT
T ss_pred             CCCEEEEeCCCcccCCHHHHHHHHHhcC--------CEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCeeCCc
Confidence            457899999999 999999999999999        34567773       7999999999999999997 799999999


Q ss_pred             EEEEEecc
Q psy16116        515 YIELFRST  522 (612)
Q Consensus       515 ~IeV~~as  522 (612)
                      .|.|..+.
T Consensus        74 ~l~V~~a~   81 (96)
T 2kvi_A           74 KLILEVSS   81 (96)
T ss_dssp             TBCEEEEE
T ss_pred             EEEEEEcC
Confidence            99998874

>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A

Probab=99.35  E-value=6.8e-13  Score=118.14  Aligned_cols=73  Identities=14%  Similarity=0.136  Sum_probs=62.6

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRY  515 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~  515 (612)
                      ..++|||+|||++++++||+++|+.||        .+..|.|+.+      |||||+|.+.++|++||+ +|+..|+||.
T Consensus        15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G--------~v~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~   80 (115)
T 3beg_B           15 SENRVVVSGLPPSGSWQDLKDHMREAG--------DVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHE   80 (115)
T ss_dssp             --CCEEEEECCSSCCTTHHHHHHGGGS--------CEEEEEECTT------SEEEEEESSHHHHHHHHHHHTTCBCCCTT
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHhcC--------CeEEEEEecC------CEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence            357799999999999999999999999        4466888765      999999999999999997 7999999987


Q ss_pred             -----EEEEecch
Q psy16116        516 -----IELFRSTT  523 (612)
Q Consensus       516 -----IeV~~as~  523 (612)
                           |+|.....
T Consensus        81 ~~~~~i~v~~~~~   93 (115)
T 3beg_B           81 GETAYIRVKVDGP   93 (115)
T ss_dssp             SCCCBCEEEECC-
T ss_pred             eeeEEEEeccCCC
Confidence                 77776554

>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.34  E-value=9.8e-13  Score=111.36  Aligned_cols=76  Identities=20%  Similarity=0.278  Sum_probs=62.3

Q ss_pred             cceecCCCHHHHHhhHhhcccccCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccCcc
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQVLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGE  416 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~~~  416 (612)
                      +++|+|||++.++++|+++|....+.+|+|+++.+|+++|||||+|.+.++|++||++|+..|+||.|+|..+..+
T Consensus        12 ~l~v~nLp~~~t~~~l~~~F~~~~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i~v~~a~~~   87 (91)
T 2dgw_A           12 TVKLRGAPFNVTEKNVMEFLAPLKPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFREKSG   87 (91)
T ss_dssp             EEEEECCCSSCCHHHHHHHHTTSCCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEEEEEEESSC
T ss_pred             EEEEECCCCCCCHHHHHHHHhhCCceEEEEEECCCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEEEEEECCcC
Confidence            4456666666666666655554458899999998899999999999999999999999999999999999887653

>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}

Probab=99.34  E-value=6.6e-13  Score=116.51  Aligned_cols=80  Identities=24%  Similarity=0.374  Sum_probs=63.4

Q ss_pred             cceecCCCHHHHHhhHhhcccc----cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccCcc
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV----LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGE  416 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~----~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~~~  416 (612)
                      +++|+|||++.++++|++||..    +.+.+|+|+++++|+++|||||+|.+.++|++||++++..|+||.|+|..+..+
T Consensus        13 ~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~~~   92 (107)
T 2lmi_A           13 LIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINNE   92 (107)
T ss_dssp             EEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCCCCEECCHH
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCcceeCCeEEEEEECCHH
Confidence            3445555555555555554443    336899999999999999999999999999999999999999999999998876


Q ss_pred             chhh
Q psy16116        417 DFIN  420 (612)
Q Consensus       417 e~~~  420 (612)
                      ++.+
T Consensus        93 ~~~~   96 (107)
T 2lmi_A           93 DVDA   96 (107)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6543

>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A

Probab=99.34  E-value=1.5e-12  Score=114.29  Aligned_cols=71  Identities=15%  Similarity=0.173  Sum_probs=63.7

Q ss_pred             cccEEEEeCCCCC-CCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCE
Q psy16116        437 AQVIIRMRGLPYE-CTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIR  514 (612)
Q Consensus       437 ~~~~VfV~nLP~s-~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR  514 (612)
                      ...+|||+|||++ +++++|+++|+.||        .+..|.|       ++|||||+|.+.++|++||+ +|+..++||
T Consensus        26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G--------~v~~v~i-------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~   90 (110)
T 1wf1_A           26 INSRVFIGNLNTALVKKSDVETIFSKYG--------RVAGCSV-------HKGYAFVQYSNERHARAAVLGENGRVLAGQ   90 (110)
T ss_dssp             CSSEEEECSCCCSSCCHHHHHHHHGGGS--------CCSEEEE-------ETTEEEEECSSSHHHHHHHHHHTTCEETTE
T ss_pred             CCcEEEEeCCCcccCCHHHHHHHHHhCC--------CeEEEEE-------eCCEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence            3468999999999 99999999999999        3456777       68999999999999999995 799999999


Q ss_pred             EEEEEecc
Q psy16116        515 YIELFRST  522 (612)
Q Consensus       515 ~IeV~~as  522 (612)
                      .|.|..+.
T Consensus        91 ~l~V~~a~   98 (110)
T 1wf1_A           91 TLDINMAG   98 (110)
T ss_dssp             ECCEEESC
T ss_pred             EEEEEECC
Confidence            99998864

>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.34  E-value=6.3e-13  Score=112.02  Aligned_cols=73  Identities=15%  Similarity=0.101  Sum_probs=61.3

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCcccCCEEE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALSKHKESIGIRYI  516 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~~~~~~iggR~I  516 (612)
                      ..++|||+|||+++++++|+++|+.||        .+..|+|+.+    ++|||||+|.+.++|++|+.. ...++|+.|
T Consensus         4 ~~~~l~V~nLp~~~te~~l~~~F~~~G--------~i~~v~i~~~----~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l   70 (88)
T 1wf0_A            4 GSSGVFVGRCTGDMTEDELREFFSQYG--------DVMDVFIPKP----FRAFAFVTFADDQIAQSLCGE-DLIIKGISV   70 (88)
T ss_dssp             CCCEEEEESCCSSSCHHHHHHHSTTTS--------CCCEEECCSS----CCSCCEEECSCHHHHHHTTTC-EEEETTEEE
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHHcC--------CeeEEEEecC----CCCEEEEEECCHHHHHHHhcC-CceeCCEEE
Confidence            346899999999999999999999999        3456888754    789999999999999876543 455699999


Q ss_pred             EEEecc
Q psy16116        517 ELFRST  522 (612)
Q Consensus       517 eV~~as  522 (612)
                      +|..+.
T Consensus        71 ~v~~a~   76 (88)
T 1wf0_A           71 HISNAE   76 (88)
T ss_dssp             EEECCC
T ss_pred             EEEecC
Confidence            998765

>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.34  E-value=5.9e-13  Score=118.11  Aligned_cols=81  Identities=19%  Similarity=0.251  Sum_probs=67.4

Q ss_pred             ccceecCCCHHHHHhhHhhcccc-cCe-eeEEEeeCCCCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccCccc
Q psy16116        340 LCPLVQNIWLSLLLNTIPGYEQV-LGL-GGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGED  417 (612)
Q Consensus       340 l~vlV~nLp~~~~e~~fkeff~~-~~v-~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~~~e  417 (612)
                      .+|+|+|||++.++++|+++|.. +.+ .+|+|+++++|+++|||||+|.+.++|++||++|+..|+||.|.|..+..++
T Consensus        16 ~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~~a~~~~   95 (114)
T 2cpy_A           16 VCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHVVTLED   95 (114)
T ss_dssp             CEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEEEECHHH
T ss_pred             cEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEEECCHHH
Confidence            35567777777777777777665 335 6799999999999999999999999999999999999999999999888765


Q ss_pred             hhh
Q psy16116        418 FIN  420 (612)
Q Consensus       418 ~~~  420 (612)
                      ...
T Consensus        96 ~~~   98 (114)
T 2cpy_A           96 MRE   98 (114)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            433

>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A

Probab=99.34  E-value=5.4e-12  Score=111.41  Aligned_cols=83  Identities=16%  Similarity=0.121  Sum_probs=71.3

Q ss_pred             cccEEEEeCCCC-----CCCHHHHHHHHhcCCCCccccccCceeEEEeeCC--CCCceeEEEEEeCCHHHHHHHHH-hCC
Q psy16116        437 AQVIIRMRGLPY-----ECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP--DGKATGDAFVLFEKEEEADKALS-KHK  508 (612)
Q Consensus       437 ~~~~VfV~nLP~-----s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~--~GrskG~AFV~F~s~edA~kAL~-~~~  508 (612)
                      .+.+|+|+||..     +-+++||++.|++||        .+.+|+|+.++  +|+++|||||+|.+.++|.+|++ +||
T Consensus         7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G--------~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG   78 (105)
T 2pe8_A            7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYG--------KVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNG   78 (105)
T ss_dssp             CCSEEEEESSSCSCCC---CHHHHHHHGGGGS--------CEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTT
T ss_pred             CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcC--------CEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCC
Confidence            457899999973     347899999999999        45779999886  36899999999999999999996 899


Q ss_pred             cccCCEEEEEEecchHHHH
Q psy16116        509 ESIGIRYIELFRSTTAEVQ  527 (612)
Q Consensus       509 ~~iggR~IeV~~as~~e~~  527 (612)
                      ..++||.|.|..+....+.
T Consensus        79 ~~~~Gr~i~v~~a~~~~f~   97 (105)
T 2pe8_A           79 RYFGGRVVKACFYNLDKFR   97 (105)
T ss_dssp             CEETTEECEEEECCHHHHH
T ss_pred             CEECCcEEEEEEcCHHHhh
Confidence            9999999999999876543

>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A

Probab=99.32  E-value=2.6e-13  Score=125.96  Aligned_cols=78  Identities=23%  Similarity=0.291  Sum_probs=68.4

Q ss_pred             cceecCCCHHHHHhhHhhcccccCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccCccch
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQVLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGEDF  418 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~~~e~  418 (612)
                      +|+|+|||++.++++|+++|...++.+|+|+++++|+++|||||+|++.++|++||++|+..|++|.|+|..++..+.
T Consensus        48 ~lfV~nLp~~~te~dL~~~F~~~Gi~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~a~~~~~  125 (139)
T 2hgn_A           48 CVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNSTTGA  125 (139)
T ss_dssp             CEECCSCCTTCCHHHHHHHHCSCCCSEEECCCSSSSCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEECCCSCC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECCCCCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEECCCCCC
Confidence            556888888888888888887755779999999999999999999999999999999999999999999988876543

>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.32  E-value=1.4e-12  Score=111.24  Aligned_cols=77  Identities=10%  Similarity=0.044  Sum_probs=66.1

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEE-EeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVL-FVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIR  514 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~-i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR  514 (612)
                      ...+|||+|||+++++++|+++|+.||        .+..|+ |+.++.   +|.|||+|.+.++|++|++ +|+..++||
T Consensus        14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G--------~v~~~~~i~~~~~---~~~afV~f~~~~~a~~Ai~~l~g~~~~g~   82 (96)
T 2e44_A           14 RIRKLQIRNIPPHLQWEVLDSLLVQYG--------VVESCEQVNTDSE---TAVVNVTYSSKDQARQALDKLNGFQLENF   82 (96)
T ss_dssp             SCCCEEEEEECSSSCHHHHHHHHHHHS--------CEEEEEEECCSSS---SEEEEEEESSHHHHHHHHHHHTTCBCSSC
T ss_pred             CCCEEEEEcCCCCCCHHHHHHHHHhcC--------CeEEEEEeecCCC---CCEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence            356799999999999999999999999        456684 776643   3449999999999999996 899999999


Q ss_pred             EEEEEecchH
Q psy16116        515 YIELFRSTTA  524 (612)
Q Consensus       515 ~IeV~~as~~  524 (612)
                      .|.|..+..+
T Consensus        83 ~l~V~~a~~~   92 (96)
T 2e44_A           83 TLKVAYIPDE   92 (96)
T ss_dssp             BCEEEECCCC
T ss_pred             EEEEEEcCcc
Confidence            9999988654

>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.31  E-value=4.8e-12  Score=108.65  Aligned_cols=71  Identities=17%  Similarity=0.130  Sum_probs=62.9

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRY  515 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~  515 (612)
                      ...+|||+||  ++++++|+++|+.||        .+..|.|.     +++|||||+|.+.++|++||+ +|+..++||.
T Consensus        14 ~~~~l~V~n~--~~t~~~l~~~F~~~G--------~i~~v~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~   78 (97)
T 1x5p_A           14 KGNTLYVYGE--DMTPTLLRGAFSPFG--------NIIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQVESVQ   78 (97)
T ss_dssp             CCSEEEEECS--SCCHHHHHHHHTTTS--------CEEEEEEE-----TTTTEEEEEESSHHHHHHHHHHTTTEEETTEE
T ss_pred             CCCEEEEcCC--CCCHHHHHHHHhhCC--------CEEEEEec-----CCCCEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence            4578999995  999999999999999        34567773     788999999999999999995 7999999999


Q ss_pred             EEEEecc
Q psy16116        516 IELFRST  522 (612)
Q Consensus       516 IeV~~as  522 (612)
                      |.|..+.
T Consensus        79 l~v~~a~   85 (97)
T 1x5p_A           79 LKVNIAR   85 (97)
T ss_dssp             EEEECCS
T ss_pred             EEEEECC
Confidence            9998765

>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*

Probab=99.28  E-value=6.2e-12  Score=136.91  Aligned_cols=79  Identities=19%  Similarity=0.208  Sum_probs=72.2

Q ss_pred             ccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEE
Q psy16116        438 QVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIRY  515 (612)
Q Consensus       438 ~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~  515 (612)
                      ..+|||+|||+.+|+++|+++|+.||        .+..|.|+.+. +|+++|||||+|.+.++|.+||+ +|+..|+|+.
T Consensus       102 ~~~lfV~nL~~~~te~~L~~~F~~~G--------~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~  173 (437)
T 3pgw_S          102 FKTLFVARVNYDTTESKLRREFEVYG--------PIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRR  173 (437)
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHcC--------CeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEE
Confidence            46899999999999999999999999        45679999886 89999999999999999999995 7999999999


Q ss_pred             EEEEecchH
Q psy16116        516 IELFRSTTA  524 (612)
Q Consensus       516 IeV~~as~~  524 (612)
                      |.|..+...
T Consensus       174 i~V~~a~~~  182 (437)
T 3pgw_S          174 VLVDVERGR  182 (437)
T ss_pred             EEEEEeCCC
Confidence            999998644

>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}

Probab=99.28  E-value=3.3e-12  Score=111.12  Aligned_cols=74  Identities=12%  Similarity=0.153  Sum_probs=60.0

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccC
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKAN  414 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~  414 (612)
                      +++|+|||++.++++|+++|.. +.+.+|++++++ +|+++|||||+|.+.++|++|++ +|+..|+||.|.|..+.
T Consensus        21 ~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak   97 (99)
T 4fxv_A           21 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR   97 (99)
T ss_dssp             EEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence            4456666666666666665554 458999999986 48999999999999999999996 79999999999997664

>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A

Probab=99.27  E-value=7.7e-12  Score=119.30  Aligned_cols=76  Identities=14%  Similarity=0.051  Sum_probs=65.9

Q ss_pred             ccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCC--E
Q psy16116        438 QVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGI--R  514 (612)
Q Consensus       438 ~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~igg--R  514 (612)
                      ..+|||+||+|++++++|+++|+.||        .+.+|+|..+   +++|||||+|.+.++|++|++ +||..|.|  |
T Consensus        46 vl~l~VgNL~~~vted~L~~~Fs~fG--------~V~~V~i~~k---~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~  114 (164)
T 1sjr_A           46 VLRIIVENLFYPVTLDVLHQIFSKFG--------TVLKIITFTK---NNQFQALLQYADPVSAQHAKLSLDGQNIYNACC  114 (164)
T ss_dssp             EEEEEECSCCSCCCHHHHHHHHHHHS--------CEEEEEEEES---SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCS
T ss_pred             eEEEEEeCcCCCCCHHHHHHHHHhcC--------CEEEEEEEeC---CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCc
Confidence            45699999999999999999999999        4567888643   367999999999999999996 79999955  9


Q ss_pred             EEEEEecchH
Q psy16116        515 YIELFRSTTA  524 (612)
Q Consensus       515 ~IeV~~as~~  524 (612)
                      .|+|..+..+
T Consensus       115 ~L~V~~Ak~~  124 (164)
T 1sjr_A          115 TLRIDFSKLT  124 (164)
T ss_dssp             CEEEEECSSS
T ss_pred             EEEEEEecCC
Confidence            9999988654

>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.27  E-value=5e-12  Score=113.76  Aligned_cols=73  Identities=15%  Similarity=0.145  Sum_probs=62.4

Q ss_pred             cccEEEE--eCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCccc--
Q psy16116        437 AQVIIRM--RGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESI--  511 (612)
Q Consensus       437 ~~~~VfV--~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~i--  511 (612)
                      ...+|||  +||++++++++|+++|++||        .++.|.|+.     .||||||+|.+.++|++|++ +|+..+  
T Consensus        24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG--------~v~~v~i~~-----~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~   90 (114)
T 2cq2_A           24 ATQSLVVANGGLGNGVSRNQLLPVLEKCG--------LVDALLMPP-----NKPYSFARYRTTEESKRAYVTLNGKEVVD   90 (114)
T ss_dssp             CCSEEEEETCTGGGTCCHHHHHHHHHHHS--------CEEEEECCT-----TCSCEEEEESSHHHHHHHHHHTTTCEEEC
T ss_pred             CCCEEEEECCCCCCCCCHHHHHHHHHhcC--------CeEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEEcc
Confidence            4567999  66999999999999999999        345677653     37999999999999999996 899988  


Q ss_pred             ---CCEEEEEEecc
Q psy16116        512 ---GIRYIELFRST  522 (612)
Q Consensus       512 ---ggR~IeV~~as  522 (612)
                         +|+.|.|..+.
T Consensus        91 ~lg~g~~l~v~~a~  104 (114)
T 2cq2_A           91 DLGQKITLYLNFVE  104 (114)
T ss_dssp             TTSCEEECEEEEES
T ss_pred             ccCCCcEEEEEecc
Confidence               78999987764

>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.27  E-value=1.5e-12  Score=117.08  Aligned_cols=80  Identities=18%  Similarity=0.329  Sum_probs=64.7

Q ss_pred             ccceecCCCHHHHHhhHhhcccc-cCeee-EEEeeCCCCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccCccc
Q psy16116        340 LCPLVQNIWLSLLLNTIPGYEQV-LGLGG-VALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGED  417 (612)
Q Consensus       340 l~vlV~nLp~~~~e~~fkeff~~-~~v~~-V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~~~e  417 (612)
                      .+|+|+|||++.++++|+++|.. +.+.+ +.+..+.+|+++|||||+|.+.++|++||++|+..|+||.|+|..+..++
T Consensus        26 ~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a~~~~  105 (124)
T 1wel_A           26 FCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKKG  105 (124)
T ss_dssp             CEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEEECHHH
T ss_pred             cEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECCHHH
Confidence            45667777777777777776665 33444 56666678999999999999999999999999999999999999988766


Q ss_pred             hh
Q psy16116        418 FI  419 (612)
Q Consensus       418 ~~  419 (612)
                      +.
T Consensus       106 ~~  107 (124)
T 1wel_A          106 ML  107 (124)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}

Probab=99.26  E-value=5.9e-12  Score=111.73  Aligned_cols=76  Identities=12%  Similarity=-0.016  Sum_probs=62.1

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCC-CCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCcc
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAF-GRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGE  416 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~-GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~  416 (612)
                      +++|+||+++.++++|+++|.. +.+.+|+|++|+. |+++|||||+|++.++|++|++ +|+..++||.|.|..+...
T Consensus         8 ~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~~~   86 (110)
T 3s8s_A            8 EVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDIKG   86 (110)
T ss_dssp             EEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSTT
T ss_pred             EEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence            4556666666666666665554 4589999999875 8999999999999999999997 8999999999999877543

>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.26  E-value=4e-12  Score=111.63  Aligned_cols=74  Identities=8%  Similarity=0.026  Sum_probs=61.7

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccC
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKAN  414 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~  414 (612)
                      +++|+|||++.++++|+++|.. +.+.+|+|+++++|+++|||||+|++.++|++||++++..++||.|.|....
T Consensus        13 ~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~~~   87 (103)
T 1s79_A           13 SVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKD   87 (103)
T ss_dssp             CEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEEHH
T ss_pred             EEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEEch
Confidence            5556677776666666666654 4589999999988999999999999999999999999999999999997543

>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A

Probab=99.25  E-value=7.1e-12  Score=104.99  Aligned_cols=73  Identities=19%  Similarity=0.245  Sum_probs=57.8

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCC-CCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEecc
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAF-GRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKA  413 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~-GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s  413 (612)
                      +++|+|||++.++++|+++|.. +.+.+|+++.++. |+++|||||+|.+.++|++|++.++..|+||.|+|..+
T Consensus        13 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~A   87 (87)
T 3s7r_A           13 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKA   87 (87)
T ss_dssp             EEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEEEC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEEeC
Confidence            4445566665555555555543 4588999998864 89999999999999999999999999999999999653

>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C

Probab=99.25  E-value=3e-12  Score=108.58  Aligned_cols=75  Identities=12%  Similarity=0.042  Sum_probs=59.7

Q ss_pred             cceecCCCHHHHHhhHhhcccc-c--CeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCc
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-L--GLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANG  415 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~--~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~  415 (612)
                      +++|+||+++.++++|+++|.. +  .+.+|+++.++ +|+++|||||+|.+.++|++|++ +|+..++||.|.|..+..
T Consensus         3 ~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~~   82 (90)
T 3p5t_L            3 ALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSNK   82 (90)
T ss_dssp             -CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC--
T ss_pred             EEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECCC
Confidence            4667777777766666666654 3  48899999986 68999999999999999999995 899999999999987754

>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B

Probab=99.25  E-value=5.2e-12  Score=111.44  Aligned_cols=98  Identities=12%  Similarity=0.037  Sum_probs=75.6

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCccch
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGEDF  418 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~e~  418 (612)
                      +++|+|||++.++++|+++|.. +.+.+|.++.  +|+++|||||+|.+.++|++|++ +|+..++|+.|.|..+.....
T Consensus        10 ~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~   87 (115)
T 3lqv_A           10 ILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGN--TPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNANRA   87 (115)
T ss_dssp             EEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEC--STTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCHHHH
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEee--CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCChh
Confidence            4556666666655555555544 4588888875  46679999999999999999998 899999999999977654311


Q ss_pred             hhccCCCCcchhhhccCCcccEEEEeCCCCCCCHHHHHHHHhcCCC
Q psy16116        419 INVAGGNNNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTE  464 (612)
Q Consensus       419 ~~~~g~~~~e~~~~~~~~~~~~VfV~nLP~s~te~dLrefF~~~Gi  464 (612)
                      .                        ++++...++++|+++|+.+|+
T Consensus        88 ~------------------------~~~~~~~~~~~l~~~~~~~g~  109 (115)
T 3lqv_A           88 F------------------------QKMDTKKKEEQLKLLKEKYGI  109 (115)
T ss_dssp             T------------------------TTSCHHHHHHHHHHHHHHHCC
T ss_pred             h------------------------hhhhHhHhHHHHHHHHHHhCC
Confidence            0                        456677889999999999994

>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}

Probab=99.24  E-value=2.2e-12  Score=110.24  Aligned_cols=75  Identities=16%  Similarity=0.112  Sum_probs=58.8

Q ss_pred             cceecCCCHHHHHhhHhhcccc-c-CeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHHh--CCCccCceEEEEeccCc
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-L-GLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALKR--HKHHIDKRYIEVTKANG  415 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~-~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~~--ng~~IggR~IeV~~s~~  415 (612)
                      +|+|+|||++.++++|+++|.. + .+.+|+|++++ +|+++|||||+|.+.++|++||+.  ++..++||.|.|..+..
T Consensus         3 ~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~~   82 (91)
T 2lxi_A            3 IVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSDP   82 (91)
T ss_dssp             EEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCCS
T ss_pred             EEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcCC
Confidence            4556667766666666665554 3 47889999886 489999999999999999999974  34579999999987754

>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A

Probab=99.24  E-value=5.5e-12  Score=109.39  Aligned_cols=77  Identities=10%  Similarity=0.077  Sum_probs=66.8

Q ss_pred             cccceecCCCH------HHHHhhHhhcccc-cCeeeEEEeeCCC-CCCcceEEEEeCCHHHHHHHHH-hCCCccCc-eEE
Q psy16116        339 ALCPLVQNIWL------SLLLNTIPGYEQV-LGLGGVALCLSAF-GRRNGEAIVRFIDQEHRDMALK-RHKHHIDK-RYI  408 (612)
Q Consensus       339 ~l~vlV~nLp~------~~~e~~fkeff~~-~~v~~V~ii~d~~-GrsrG~AFVeF~S~EdA~kAL~-~ng~~Igg-R~I  408 (612)
                      +.+|+|+|||+      +.++++|+++|.. +.+.+|+|++++. |+++|||||+|.+.++|++||+ +|+..++| |.|
T Consensus         6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l   85 (100)
T 3ns6_A            6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRL   85 (100)
T ss_dssp             GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBC
T ss_pred             CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEE
Confidence            34677888998      8888888877765 5689999999886 9999999999999999999996 89999999 999


Q ss_pred             EEeccCc
Q psy16116        409 EVTKANG  415 (612)
Q Consensus       409 eV~~s~~  415 (612)
                      .|..+..
T Consensus        86 ~V~~a~~   92 (100)
T 3ns6_A           86 FLYTMKD   92 (100)
T ss_dssp             EEEESHH
T ss_pred             EEEECch
Confidence            9987754

>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A

Probab=99.24  E-value=3.1e-12  Score=104.29  Aligned_cols=72  Identities=18%  Similarity=0.264  Sum_probs=56.5

Q ss_pred             ceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEecc
Q psy16116        342 PLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKA  413 (612)
Q Consensus       342 vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s  413 (612)
                      ++|+|||.+.++++++++|.. +.+.+|+++.++ +|+++|||||+|.+.++|++|+++++..|+||.|.|..+
T Consensus         2 l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A   75 (75)
T 2mss_A            2 IFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA   75 (75)
T ss_dssp             EEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred             EEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence            345555555555555544443 348889998887 689999999999999999999999999999999998653

>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}

Probab=99.23  E-value=9.4e-12  Score=107.96  Aligned_cols=71  Identities=18%  Similarity=0.170  Sum_probs=54.6

Q ss_pred             ecCCCHHHHHhhHhhccccc---CeeeEEEeeCCC-CCCcceEEEEeCCHHHHHHHHH-hCCC----ccCceEEEEeccC
Q psy16116        344 VQNIWLSLLLNTIPGYEQVL---GLGGVALCLSAF-GRRNGEAIVRFIDQEHRDMALK-RHKH----HIDKRYIEVTKAN  414 (612)
Q Consensus       344 V~nLp~~~~e~~fkeff~~~---~v~~V~ii~d~~-GrsrG~AFVeF~S~EdA~kAL~-~ng~----~IggR~IeV~~s~  414 (612)
                      |+|||++.++++|+++|...   .+.+|++++|+. |+++|||||+|.+.++|++||+ +|+.    .|+||.|.|..+.
T Consensus        14 V~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~V~~Ak   93 (95)
T 2lkz_A           14 LRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGVDFAK   93 (95)
T ss_dssp             EESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEEEEECC
T ss_pred             EeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEEEEEcc
Confidence            55555555555555555432   367899999874 8999999999999999999997 6665    5899999997764

>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A

Probab=99.23  E-value=2.8e-11  Score=111.34  Aligned_cols=75  Identities=15%  Similarity=0.045  Sum_probs=64.6

Q ss_pred             ccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeE-EEEEeCCHHHHHHHHH-hCCcccCC--
Q psy16116        438 QVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGD-AFVLFEKEEEADKALS-KHKESIGI--  513 (612)
Q Consensus       438 ~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~-AFV~F~s~edA~kAL~-~~~~~igg--  513 (612)
                      -..|||+||+|.+|+++|+++|+.||        .+.+|++..+    ++|| |||+|.+.++|++|++ +||..|.|  
T Consensus        28 VL~I~V~NL~~~vte~~L~~lFs~yG--------~V~~V~i~~~----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~   95 (130)
T 3zzy_A           28 VLRIIVENLFYPVTLDVLHQIFSKFG--------TVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNAC   95 (130)
T ss_dssp             EEEEEEESCCSCCCHHHHHHHHTTSS--------CEEEEEEEEE----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTE
T ss_pred             eEEEEECCCCCCCCHHHHHHHHhCcC--------CEEEEEEEcC----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCC
Confidence            35688999999999999999999999        4567887753    3688 9999999999999996 89999987  


Q ss_pred             EEEEEEecchH
Q psy16116        514 RYIELFRSTTA  524 (612)
Q Consensus       514 R~IeV~~as~~  524 (612)
                      +.|+|..+...
T Consensus        96 ~~LrI~~ak~~  106 (130)
T 3zzy_A           96 CTLRIDFSKLT  106 (130)
T ss_dssp             EEEEEEECSCS
T ss_pred             cEEEEEecCCC
Confidence            89999887643

>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.22  E-value=1.1e-11  Score=107.31  Aligned_cols=77  Identities=19%  Similarity=0.187  Sum_probs=65.8

Q ss_pred             ccceecCCCHHHHHhhHhhcccccCeeeEEEeeCCC-CCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccCcc
Q psy16116        340 LCPLVQNIWLSLLLNTIPGYEQVLGLGGVALCLSAF-GRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGE  416 (612)
Q Consensus       340 l~vlV~nLp~~~~e~~fkeff~~~~v~~V~ii~d~~-GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~~~  416 (612)
                      .+++|+|||++.++++|+++|...++.+|+|++++. |+++|||||+|.+.++|++||++++..|+||.|.|..+...
T Consensus        16 ~~l~V~nLp~~~t~~~l~~~F~~~gi~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~~   93 (103)
T 2dng_A           16 YTAYVGNLPFNTVQGDIDAIFKDLSIRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDIAEGR   93 (103)
T ss_dssp             EEEEEESCCTTCCHHHHHHHTTTSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEECEEEECCCC
T ss_pred             eEEEEeCCCCCCCHHHHHHHHHhCCceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEEEEEEecCC
Confidence            356678888887777787777665689999999875 89999999999999999999998999999999999877653

>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.22  E-value=1.8e-11  Score=105.28  Aligned_cols=75  Identities=15%  Similarity=0.165  Sum_probs=59.9

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCc
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANG  415 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~  415 (612)
                      +++|+|||.+.++++|+++|.. +.+.+|+++.+++|+++|||||+|.+.++|++|++ +++..|+|+.|.|..+..
T Consensus        19 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~   95 (100)
T 2do4_A           19 KLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISNS   95 (100)
T ss_dssp             CEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECCC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCC
Confidence            3445556555555555555543 45889999999999999999999999999999995 799999999999987754

>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}

Probab=99.22  E-value=1.1e-11  Score=103.48  Aligned_cols=76  Identities=13%  Similarity=0.142  Sum_probs=60.6

Q ss_pred             ccceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCc
Q psy16116        340 LCPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANG  415 (612)
Q Consensus       340 l~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~  415 (612)
                      .+++|+|||.+.++++|+++|.. +.+.+|+++.++ +|+++|||||+|.+.++|++|++ +++..++|+.|.|..+..
T Consensus         7 ~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~   85 (87)
T 3bs9_A            7 FHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR   85 (87)
T ss_dssp             EEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC-
T ss_pred             eEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecCC
Confidence            35556666666666666655554 458899999985 68999999999999999999997 799999999999977653

>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}

Probab=99.22  E-value=1.3e-11  Score=104.85  Aligned_cols=74  Identities=18%  Similarity=0.122  Sum_probs=59.2

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccC
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKAN  414 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~  414 (612)
                      +++|+|||++.++++|+++|.. +.+.+|+|..+++|+++|||||+|.+.++|++|++ +|+..++||.|.|..+.
T Consensus        18 ~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~   93 (95)
T 2ywk_A           18 TVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPS   93 (95)
T ss_dssp             EEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred             EEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcC
Confidence            4445556555555555554443 45889999999999999999999999999999998 89999999999997664

>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.22  E-value=1.9e-11  Score=104.75  Aligned_cols=77  Identities=16%  Similarity=0.113  Sum_probs=60.7

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHH-HhCCCccCceEEEEeccCccc
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMAL-KRHKHHIDKRYIEVTKANGED  417 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL-~~ng~~IggR~IeV~~s~~~e  417 (612)
                      +++|+|||.+.++++|+++|.. +.+.+|+++.++ +|+++|||||+|.+.++|++|| .+|+..|+|+.|.|..+....
T Consensus        10 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~   89 (99)
T 1whw_A           10 RLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIKK   89 (99)
T ss_dssp             EEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECCCCS
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCc
Confidence            4445566655555555555443 358899999887 7999999999999999999999 589999999999998876643

>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.21  E-value=2.4e-11  Score=104.35  Aligned_cols=76  Identities=22%  Similarity=0.190  Sum_probs=59.9

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccCcc
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGE  416 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~~~  416 (612)
                      +++|+||+.+.++++|+++|.. +.+.+|+|+.++ +|+++|||||+|.+.++|++||++++..|+|+.|.|..+...
T Consensus        12 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~~a~~~   89 (99)
T 2dgs_A           12 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPR   89 (99)
T ss_dssp             EEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEEECCCC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence            3445555555555555555443 458899999886 589999999999999999999999999999999999887654

>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.21  E-value=1.4e-11  Score=106.84  Aligned_cols=77  Identities=18%  Similarity=0.188  Sum_probs=65.4

Q ss_pred             ccceecCCCHHHHHhhHhhcccccCeeeEEEeeCCC--CCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccCcc
Q psy16116        340 LCPLVQNIWLSLLLNTIPGYEQVLGLGGVALCLSAF--GRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGE  416 (612)
Q Consensus       340 l~vlV~nLp~~~~e~~fkeff~~~~v~~V~ii~d~~--GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~~~  416 (612)
                      .+++|+||+++.++++|+++|...++.+|+|+.+++  |+++|||||+|.+.++|++||.+++..|+|+.|.|..+...
T Consensus        16 ~~l~V~nlp~~~t~~~l~~~F~~~Gi~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~~   94 (104)
T 1wi8_A           16 YTAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIRVDVADQA   94 (104)
T ss_dssp             EEEEEESCCSSCCHHHHHHHTTTSCEEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECEEEECCCC
T ss_pred             CEEEEeCCCCcCCHHHHHHHHHHCCceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEEEEEEccCC
Confidence            356677888777777777777664488999998875  89999999999999999999988999999999999887654

>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}

Probab=99.21  E-value=5.7e-12  Score=109.05  Aligned_cols=75  Identities=20%  Similarity=0.198  Sum_probs=61.6

Q ss_pred             cceecCCCHHHHHhhHhhcccccCeeeEEEeeCC--CCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccCc
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQVLGLGGVALCLSA--FGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANG  415 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~~~v~~V~ii~d~--~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~~  415 (612)
                      +++|+||+++.++++|+++|...++.+|+|+.++  +|+++|||||+|.+.++|++||.+++..|+||.|.|..+..
T Consensus        21 ~l~V~nLp~~~t~~~l~~~F~~~Gi~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~l~V~~a~~   97 (100)
T 2j76_E           21 TAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIRVDVADQ   97 (100)
T ss_dssp             EEEESCCSSCCSSSHHHHHSCSSCEEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBCCCCEECCC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeEEEEEeccC
Confidence            3446667666666677766665338899999886  69999999999999999999999899999999999977654

>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.21  E-value=3.5e-11  Score=109.72  Aligned_cols=72  Identities=17%  Similarity=0.169  Sum_probs=62.0

Q ss_pred             cEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeE-EEEEeCCHHHHHHHHH-hCCcccCC--E
Q psy16116        439 VIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGD-AFVLFEKEEEADKALS-KHKESIGI--R  514 (612)
Q Consensus       439 ~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~-AFV~F~s~edA~kAL~-~~~~~igg--R  514 (612)
                      ..|||+||+|.+++++|+++|+.||        .+..|+|...     +|| |||+|.+.++|.+|++ +||..|.|  |
T Consensus        26 l~l~V~NL~~~vt~~~L~~~Fs~yG--------~V~~v~i~~~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~   92 (124)
T 2e5i_A           26 LLLSIQNPLYPITVDVLYTVCNPVG--------KVQRIVIFKR-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCC   92 (124)
T ss_dssp             EEEEEESCCSCCCHHHHHHHHTTTS--------CEEEEEEEES-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBS
T ss_pred             EEEEEcCcCCCCCHHHHHHHHHhcC--------CEEEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCe
Confidence            4578999999999999999999999        4567888642     386 9999999999999996 89999977  6


Q ss_pred             EEEEEecch
Q psy16116        515 YIELFRSTT  523 (612)
Q Consensus       515 ~IeV~~as~  523 (612)
                      .|+|..+..
T Consensus        93 ~l~V~~Ak~  101 (124)
T 2e5i_A           93 TLKIEYARP  101 (124)
T ss_dssp             EEEEECCSC
T ss_pred             EEEEEEecC
Confidence            899987754

>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3

Probab=99.20  E-value=6e-12  Score=110.78  Aligned_cols=71  Identities=20%  Similarity=0.229  Sum_probs=62.1

Q ss_pred             EeCCCCCCCHHHHHHHH------------hcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCc
Q psy16116        443 MRGLPYECTAKQVIDFF------------EAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKE  509 (612)
Q Consensus       443 V~nLP~s~te~dLrefF------------~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~  509 (612)
                      +.||++.+++++|++.|            ++||        .+.+|+|+.+.+|+++|||||+|.+.++|++|++ +||.
T Consensus        20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G--------~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~   91 (104)
T 1jmt_A           20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYG--------EVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNR   91 (104)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--------CEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTC
T ss_pred             cCCcccccCHHHHHHHHHHHHHHHHHHhhccCC--------ceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCC
Confidence            56788888888777666            9999        4577999998889999999999999999999996 8999


Q ss_pred             ccCCEEEEEEec
Q psy16116        510 SIGIRYIELFRS  521 (612)
Q Consensus       510 ~iggR~IeV~~a  521 (612)
                      .++||.|.|..+
T Consensus        92 ~~~Gr~i~v~~s  103 (104)
T 1jmt_A           92 WFNGQPIHAELS  103 (104)
T ss_dssp             EETTEECCEEEC
T ss_pred             EECCEEEEEEEc
Confidence            999999999765

>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0

Probab=99.20  E-value=1.8e-11  Score=101.30  Aligned_cols=76  Identities=13%  Similarity=0.102  Sum_probs=61.6

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCcc
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGE  416 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~  416 (612)
                      +++|+|||.+.++++|+++|.. +.+.+|+++.++ +|+++|||||+|.+.++|++|++ +++..++||.|.|..+...
T Consensus         3 ~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~   81 (83)
T 3md1_A            3 NLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL   81 (83)
T ss_dssp             EEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence            4556677766666666665554 458899999884 68999999999999999999998 7999999999999877643

>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.19  E-value=3.1e-11  Score=102.56  Aligned_cols=76  Identities=17%  Similarity=0.229  Sum_probs=61.0

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCC-CCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCcc
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAF-GRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGE  416 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~-GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~  416 (612)
                      +++|+||+.+.++++|+++|.. +.+.+|+++.++. |+++|||||+|.+.++|++|++ +|+..++|+.|.|..+...
T Consensus         7 ~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~   85 (95)
T 2dnz_A            7 GLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTER   85 (95)
T ss_dssp             EEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESSCC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcccc
Confidence            4556666666666666655544 4588999998864 8999999999999999999998 8999999999999877653

>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.19  E-value=2.3e-11  Score=103.60  Aligned_cols=76  Identities=14%  Similarity=0.070  Sum_probs=59.2

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeE-EEeeC-CCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCcc
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGV-ALCLS-AFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGE  416 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V-~ii~d-~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~  416 (612)
                      +++|+|||.+.++++|+++|.. +.+.+| +++.+ .+|+++|||||+|.+.++|++|++ +++..|+|+.|.|..+...
T Consensus         7 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~   86 (96)
T 1x5t_A            7 GIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKK   86 (96)
T ss_dssp             EEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEESCCC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEeccc
Confidence            4445556555555555554443 347788 88888 578999999999999999999998 8999999999999887654

>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A

Probab=99.19  E-value=1.8e-11  Score=102.55  Aligned_cols=75  Identities=17%  Similarity=0.134  Sum_probs=59.8

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccCc
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANG  415 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~~  415 (612)
                      +++|+|||.+.++++|+++|.. +.+.+|+++.++ +|+++|||||+|.+.++|++|+.+++..++|+.|.|..+..
T Consensus         8 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~~a~~   84 (89)
T 3ucg_A            8 SIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRT   84 (89)
T ss_dssp             EEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEEETTT
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEEEccC
Confidence            4456666665555555555544 458899999886 68999999999999999999998899999999999977653

>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.18  E-value=3.4e-11  Score=105.88  Aligned_cols=75  Identities=12%  Similarity=0.026  Sum_probs=60.1

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCc
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANG  415 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~  415 (612)
                      +++|+||+++.++++|+++|.. +.+.+|+|+.+++|+++|||||+|.+.++|++|++ +++..|+|+.|.|..+..
T Consensus        17 ~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~   93 (114)
T 2do0_A           17 TVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDER   93 (114)
T ss_dssp             CEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEccc
Confidence            4445556655555555555543 35889999999999999999999999999999998 899999999999987754

>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A

Probab=99.18  E-value=2.6e-11  Score=105.44  Aligned_cols=74  Identities=22%  Similarity=0.132  Sum_probs=59.8

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccC
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKAN  414 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~  414 (612)
                      +++|+||+++.++++|+++|.. +.+..|+|+.+++|+++|||||+|.+.++|++|++ +++..|+|+.|.|..++
T Consensus        31 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~  106 (107)
T 3ulh_A           31 KLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT  106 (107)
T ss_dssp             EEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence            4456666665555555555544 35889999999999999999999999999999998 79999999999997653

>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A

Probab=99.18  E-value=4.8e-11  Score=105.22  Aligned_cols=83  Identities=16%  Similarity=0.154  Sum_probs=69.9

Q ss_pred             cccEEEEeCC--CCCCC--------HHHHHHHHhcCCCCccccccCceeEEEeeCCCC---CceeEEEEEeCCHHHHHHH
Q psy16116        437 AQVIIRMRGL--PYECT--------AKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDG---KATGDAFVLFEKEEEADKA  503 (612)
Q Consensus       437 ~~~~VfV~nL--P~s~t--------e~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~G---rskG~AFV~F~s~edA~kA  503 (612)
                      .+.+|.|+|+  |....        ++||++.|++||        .+.+|+|+++..+   +++|||||+|.+.++|.+|
T Consensus         4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G--------~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~A   75 (105)
T 3v4m_A            4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYG--------LVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKA   75 (105)
T ss_dssp             CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTS--------CEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHH
T ss_pred             CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccC--------CEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHH
Confidence            3568999998  44443        479999999999        4577999988743   6899999999999999999


Q ss_pred             HH-hCCcccCCEEEEEEecchHHHH
Q psy16116        504 LS-KHKESIGIRYIELFRSTTAEVQ  527 (612)
Q Consensus       504 L~-~~~~~iggR~IeV~~as~~e~~  527 (612)
                      ++ +||..++||.|.|..++...+.
T Consensus        76 i~~lnG~~f~GR~i~v~~~~~~~f~  100 (105)
T 3v4m_A           76 MQGLTGRKFANRVVVTKYCDPDSYH  100 (105)
T ss_dssp             HHHHTTCEETTEECEEEEECHHHHH
T ss_pred             HHHhCCCEeCCCEEEEEEeCHHHHh
Confidence            95 8999999999999998877654

>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}

Probab=99.17  E-value=2.8e-11  Score=104.07  Aligned_cols=72  Identities=21%  Similarity=0.230  Sum_probs=54.7

Q ss_pred             ceecCCCHHHHHhhHhhcccc-cCeee--------EEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEE
Q psy16116        342 PLVQNIWLSLLLNTIPGYEQV-LGLGG--------VALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEV  410 (612)
Q Consensus       342 vlV~nLp~~~~e~~fkeff~~-~~v~~--------V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV  410 (612)
                      ++|+||+++.++++|+++|.. +.+.+        |+++.++ +|+++|||||+|.+.++|++|++ +++..++||.|.|
T Consensus        16 l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V   95 (99)
T 2la6_A           16 IFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKV   95 (99)
T ss_dssp             EEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred             EEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence            335555554444444444443 33666        8999885 58999999999999999999997 8999999999999


Q ss_pred             ecc
Q psy16116        411 TKA  413 (612)
Q Consensus       411 ~~s  413 (612)
                      ..+
T Consensus        96 ~~A   98 (99)
T 2la6_A           96 SFA   98 (99)
T ss_dssp             EEC
T ss_pred             Eec
Confidence            765

>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1

Probab=99.17  E-value=2.7e-10  Score=103.66  Aligned_cols=64  Identities=16%  Similarity=0.186  Sum_probs=53.4

Q ss_pred             HHHHhhHhhcccccCeeeEEEeeCCC-CCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCcc
Q psy16116        350 SLLLNTIPGYEQVLGLGGVALCLSAF-GRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGE  416 (612)
Q Consensus       350 ~~~e~~fkeff~~~~v~~V~ii~d~~-GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~  416 (612)
                      ++++++|+.|+   .+.+|+|+.++. |+++|||||+|.+.++|++|++ +|+..|+|+.|.|..+...
T Consensus        57 ~~l~~~F~~~G---~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~  122 (139)
T 1u6f_A           57 VQLRQLFERYG---PIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAASG  122 (139)
T ss_dssp             HHHHHHHHHHS---CEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEESSCC
T ss_pred             HHHHHHHHhcC---CeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence            55555555554   488999988864 8899999999999999999998 7999999999999887654

>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.17  E-value=3.4e-11  Score=104.30  Aligned_cols=73  Identities=18%  Similarity=0.124  Sum_probs=56.7

Q ss_pred             ecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCcc
Q psy16116        344 VQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGE  416 (612)
Q Consensus       344 V~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~  416 (612)
                      |+||+++.++++|+++|.. +.+..|+++.++ +|+++|||||+|.+.++|++|++ +++..|+|+.|.|..+...
T Consensus        20 V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~   95 (105)
T 1x5u_A           20 VGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKASAH   95 (105)
T ss_dssp             EECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEETTTT
T ss_pred             EeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCC
Confidence            4445444444444444433 348899999887 68999999999999999999998 7999999999999887654

>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A

Probab=99.17  E-value=7e-12  Score=101.97  Aligned_cols=71  Identities=14%  Similarity=0.165  Sum_probs=55.2

Q ss_pred             ceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCC-CCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEec
Q psy16116        342 PLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAF-GRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTK  412 (612)
Q Consensus       342 vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~-GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~  412 (612)
                      ++|+|||.+.++++|+++|.. +.+.+|.+..++. |+++|||||+|.+.++|++|++.++..++|+.|.|..
T Consensus         2 l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~   74 (75)
T 1iqt_A            2 IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKV   74 (75)
T ss_dssp             EEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEE
T ss_pred             EEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEE
Confidence            345555555555555554443 3478888888864 8999999999999999999999999999999988864

>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.16  E-value=4.8e-11  Score=101.16  Aligned_cols=73  Identities=18%  Similarity=0.155  Sum_probs=58.6

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCC-CCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEecc
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAF-GRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKA  413 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~-GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s  413 (612)
                      +++|+|||.+.++++|+++|.. +.+..|+++.++. |+++|||||+|.+.++|++|++ +|+..|+||.|.|..+
T Consensus        18 ~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a   93 (94)
T 2e5h_A           18 TVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA   93 (94)
T ss_dssp             SEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred             EEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence            4446666666666666665554 4588999998875 8899999999999999999996 8999999999999764

>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}

Probab=99.16  E-value=5.3e-11  Score=112.05  Aligned_cols=76  Identities=11%  Similarity=0.014  Sum_probs=61.3

Q ss_pred             cceecCCCHHHHHhhHhhcccc-c--CeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCc
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-L--GLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANG  415 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~--~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~  415 (612)
                      +++|+||+++.++++|+++|.. +  .+.+|+|+.|+ +|+++|||||+|.+.++|++||+ +|+..|+||.|.|..+..
T Consensus        57 ~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~a~~  136 (156)
T 3n9u_C           57 AVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPATR  136 (156)
T ss_dssp             EEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEECCH
T ss_pred             EEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEEcCC
Confidence            4556666666666666655544 3  48899999986 69999999999999999999998 599999999999988765


Q ss_pred             c
Q psy16116        416 E  416 (612)
Q Consensus       416 ~  416 (612)
                      .
T Consensus       137 ~  137 (156)
T 3n9u_C          137 Q  137 (156)
T ss_dssp             H
T ss_pred             C
Confidence            4

>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}

Probab=99.16  E-value=1.2e-11  Score=106.60  Aligned_cols=96  Identities=16%  Similarity=0.007  Sum_probs=65.5

Q ss_pred             ceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCccchh
Q psy16116        342 PLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGEDFI  419 (612)
Q Consensus       342 vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~e~~  419 (612)
                      ++|+|||.+.++++|+++|.. +.+.+|.++.+    ++|||||+|.+.++|++|++ +++..++|+.|.|..+......
T Consensus         3 l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~   78 (101)
T 2hvz_A            3 VYVGNLGTGAGKGELERAFSYYGPLRTVWIARN----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRR   78 (101)
T ss_dssp             EEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCCS
T ss_pred             EEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCCc
Confidence            445555555555555544443 35788998876    78999999999999999998 7999999999999887654321


Q ss_pred             hccCCCCcchhhhccCCcccEEEEeCCC
Q psy16116        420 NVAGGNNNEAQAFLTRGAQVIIRMRGLP  447 (612)
Q Consensus       420 ~~~g~~~~e~~~~~~~~~~~~VfV~nLP  447 (612)
                      ...+...      ..+.....|||+||+
T Consensus        79 ~~~~~~~------~~~~~~~~ifvg~L~  100 (101)
T 2hvz_A           79 SRFDRPP------ARRKLLEVLFNGPLE  100 (101)
T ss_dssp             SCCCSCC------CSCCCCSCCCSCCCC
T ss_pred             ccCCCCC------ccccCCCceecCCCC
Confidence            1111110      011234569999996

>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.16  E-value=3.2e-11  Score=104.60  Aligned_cols=76  Identities=17%  Similarity=0.160  Sum_probs=60.3

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccCcc
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGE  416 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~~~  416 (612)
                      +++|+|||++.++++|+++|.. +.+.+|+|+.++ +|+++|||||+|++.++|++||+.++..|+|+.|.|..+...
T Consensus        18 ~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~~a~~~   95 (105)
T 2dh8_A           18 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTPR   95 (105)
T ss_dssp             EECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCCCSCCS
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEccCC
Confidence            4446666665555555555544 458899999985 589999999999999999999988999999999999887654

>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.16  E-value=2.7e-11  Score=104.77  Aligned_cols=76  Identities=14%  Similarity=0.137  Sum_probs=59.9

Q ss_pred             cceecCCCHHHHHhhHhhcccc--cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCc-cCceEEEEeccCcc
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV--LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHH-IDKRYIEVTKANGE  416 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~--~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~-IggR~IeV~~s~~~  416 (612)
                      +++|+||+.+.++++|+++|..  +.+.+|+|+.+++|+++|||||+|.+.++|++||+ +++.. |+|+.|.|..+...
T Consensus        11 ~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~a~~~   90 (104)
T 2dhg_A           11 SLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPK   90 (104)
T ss_dssp             CEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCBCCCC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEEccCC
Confidence            4445566655555555554443  34889999999999999999999999999999998 78888 99999999877554

>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A

Probab=99.16  E-value=4.4e-11  Score=103.62  Aligned_cols=75  Identities=15%  Similarity=0.069  Sum_probs=58.1

Q ss_pred             ceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCc---eEEEEeccCcc
Q psy16116        342 PLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDK---RYIEVTKANGE  416 (612)
Q Consensus       342 vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~Igg---R~IeV~~s~~~  416 (612)
                      ++|+||+++.++++|+++|.. +.+..|+|+.+++|+++|||||+|.+.++|++||+ +|+..+.|   +.|.|..+...
T Consensus        18 l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~~a~~~   97 (105)
T 2dnh_A           18 LFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTD   97 (105)
T ss_dssp             EEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEEESCSS
T ss_pred             EEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEEECccC
Confidence            335555555444444444443 34889999999999999999999999999999997 89988887   99999877653

>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}

Probab=99.16  E-value=3.5e-11  Score=106.01  Aligned_cols=74  Identities=18%  Similarity=0.220  Sum_probs=57.6

Q ss_pred             eecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCC-CCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccCcc
Q psy16116        343 LVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAF-GRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGE  416 (612)
Q Consensus       343 lV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~-GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~~~  416 (612)
                      +|+||+++.++++|+++|.. +.+.+|+++.+++ |+++|||||+|.+.++|++||+..+..|+||.|.|..+...
T Consensus        29 fV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~a~~~  104 (109)
T 2rs2_A           29 FIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPR  104 (109)
T ss_dssp             EEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEECCCC
T ss_pred             EEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEEccCC
Confidence            35555555555555544443 3588999998874 89999999999999999999998789999999999877543

>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.16  E-value=4.4e-11  Score=101.42  Aligned_cols=74  Identities=19%  Similarity=0.163  Sum_probs=58.1

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCC-CCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccC
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAF-GRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKAN  414 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~-GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~  414 (612)
                      +++|+|||.+.++++|+++|.. +.+.+|.++.++. |+++|||||+|.+.++|++|++ +|+..++||.|.|..+.
T Consensus        17 ~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~   93 (95)
T 2cqc_A           17 CLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGPS   93 (95)
T ss_dssp             CEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCS
T ss_pred             EEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEecC
Confidence            4455566655555555554443 3488999998865 7899999999999999999998 79999999999997764

>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*

Probab=99.16  E-value=2.8e-11  Score=100.60  Aligned_cols=73  Identities=16%  Similarity=0.079  Sum_probs=57.0

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeC-CCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEecc
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLS-AFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKA  413 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d-~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s  413 (612)
                      +++|+|||.+.++++|+++|.. +.+.+|.++.+ .+|+++|||||+|.+.++|++|++ +|+..++|+.|.|..+
T Consensus         9 ~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a   84 (85)
T 3mdf_A            9 VLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA   84 (85)
T ss_dssp             EEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred             EEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence            4445566655555555554443 45889999887 568899999999999999999995 8999999999999754

>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A

Probab=99.16  E-value=1.6e-10  Score=101.99  Aligned_cols=64  Identities=9%  Similarity=0.113  Sum_probs=53.4

Q ss_pred             HHHHhhHhhcccccCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCcc
Q psy16116        350 SLLLNTIPGYEQVLGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGE  416 (612)
Q Consensus       350 ~~~e~~fkeff~~~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~  416 (612)
                      ++++++|+.|+   .+.+|+|+.++ +|+++|||||+|.+.++|++||+ +|+..|+|+.|.|..+...
T Consensus        40 ~~l~~~F~~~G---~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~  105 (115)
T 2cpz_A           40 QDLLQMFMPFG---NVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSK  105 (115)
T ss_dssp             HHHHHHHGGGS---CCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECCCCS
T ss_pred             HHHHHHHHhcC---CeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcCCC
Confidence            55555555554   48899999987 68999999999999999999995 7999999999999877654

>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.16  E-value=4.3e-11  Score=104.24  Aligned_cols=67  Identities=16%  Similarity=0.224  Sum_probs=57.3

Q ss_pred             cEEEEeCCCCCCCHHH----HHHHHhcC-CCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccC
Q psy16116        439 VIIRMRGLPYECTAKQ----VIDFFEAG-TENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIG  512 (612)
Q Consensus       439 ~~VfV~nLP~s~te~d----LrefF~~~-Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~ig  512 (612)
                      .+|||+|||+++++++    |+++|+.| |    +|++    |      +|   |+|||+|.+.++|++|++ +++..+.
T Consensus        10 T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG----~Vl~----V------tg---G~AfV~F~~~esA~~A~~~l~G~~l~   72 (96)
T 2diu_A           10 TLLYVYNLPANKDGKSVSNRLRRLSDNCGG----KVLS----I------TG---CSAILRFINQDSAERAQKRMENEDVF   72 (96)
T ss_dssp             EEEEEESCCTTSCHHHHHHHHHHHHHTTTC----CEEE----C------CT---TCEEEEESSHHHHHHHHHHHTTCCSS
T ss_pred             eEEEEeCCCCcCCHHHHHHHHHHHHHHcCC----eeEE----E------ec---CEEEEEECCHHHHHHHHHHhcCCccC
Confidence            3499999999999988    55899999 6    4532    2      34   999999999999999996 8999999


Q ss_pred             CEEEEEEecc
Q psy16116        513 IRYIELFRST  522 (612)
Q Consensus       513 gR~IeV~~as  522 (612)
                      ||.|+|..+.
T Consensus        73 gr~i~v~~A~   82 (96)
T 2diu_A           73 GNRIIVSFTP   82 (96)
T ss_dssp             SSCCEEESSC
T ss_pred             CceEEEEecC
Confidence            9999998764

>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.15  E-value=7.4e-11  Score=101.97  Aligned_cols=75  Identities=15%  Similarity=0.073  Sum_probs=61.5

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCcc
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGE  416 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~  416 (612)
                      +++|+|||.+.++++|+++|.. +.+..|+|+.+ +|+++|||||+|.+.++|++|++ +|+..|+|+.|.|..+...
T Consensus        17 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~   93 (103)
T 2d9p_A           17 NLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK   93 (103)
T ss_dssp             CEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC-SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECSSC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeccc
Confidence            4446666666666666665554 45889999998 89999999999999999999997 8999999999999887654

>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.14  E-value=7.3e-11  Score=102.02  Aligned_cols=76  Identities=16%  Similarity=0.100  Sum_probs=62.6

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCcc
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGE  416 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~  416 (612)
                      +++|+|||.+.++++|+++|.. +.+..|+|+.++ +|+++|||||+|.+.++|++||+ +++..|+|+.|.|..+...
T Consensus        17 ~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~   95 (103)
T 2cq0_A           17 TIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAKPS   95 (103)
T ss_dssp             EEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSCC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEECCCC
Confidence            4556677776666667766654 458899999986 68999999999999999999998 8999999999999877653

>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A

Probab=99.14  E-value=5.3e-11  Score=104.93  Aligned_cols=76  Identities=13%  Similarity=0.138  Sum_probs=59.8

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCcc
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGE  416 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~  416 (612)
                      +|+|+||+.+.++++|+++|.. +.+.+|+|+.++ +|+++|||||+|.+.++|++||+ +++..|+|+.|.|..+...
T Consensus        17 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~   95 (115)
T 2dgo_A           17 HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK   95 (115)
T ss_dssp             EEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSCC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEccCC
Confidence            4445555555555555554443 358899999986 68999999999999999999997 7999999999999887654

>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.14  E-value=3.2e-11  Score=104.26  Aligned_cols=75  Identities=20%  Similarity=0.126  Sum_probs=58.6

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCC-CCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCc
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAF-GRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANG  415 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~-GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~  415 (612)
                      +++|+||+.+.++++|+++|.. +.+..|.|+.++. |+++|||||+|.+.++|++||+ +|+..|+|+.|.|..+..
T Consensus        15 ~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~   92 (103)
T 2dnm_A           15 TLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVARY   92 (103)
T ss_dssp             EEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEECSS
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEECCc
Confidence            3345555555555555554443 3588999988865 8999999999999999999998 899999999999987764

>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}

Probab=99.14  E-value=5.3e-11  Score=106.11  Aligned_cols=77  Identities=13%  Similarity=0.073  Sum_probs=60.3

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCccc
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGED  417 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~e  417 (612)
                      +++|+||+++.++++|+++|.. +.+.+|.|+.+++|+++|||||+|.+.++|++|++ +++..|+|+.|.|..+....
T Consensus         9 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~   87 (116)
T 2fy1_A            9 KLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAKKPS   87 (116)
T ss_dssp             EEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECCCSS
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCCC
Confidence            3345555555555555544443 34889999999999999999999999999999997 79999999999998876543

>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B

Probab=99.14  E-value=4.3e-11  Score=102.28  Aligned_cols=76  Identities=14%  Similarity=0.173  Sum_probs=60.0

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCcc
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGE  416 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~  416 (612)
                      +++|+||+.+.++++|+++|.. +.+.+|+++.++ +|+++|||||+|.+.++|++|++ +++..++||.|.|..+...
T Consensus         4 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~   82 (96)
T 2x1f_A            4 VVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSNS   82 (96)
T ss_dssp             EEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCS
T ss_pred             EEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCCC
Confidence            4456666665555555555443 458899998886 48999999999999999999996 8999999999999887654

>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}

Probab=99.13  E-value=6.5e-11  Score=105.99  Aligned_cols=74  Identities=22%  Similarity=0.139  Sum_probs=57.6

Q ss_pred             ceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCc
Q psy16116        342 PLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANG  415 (612)
Q Consensus       342 vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~  415 (612)
                      ++|+||+.+.++++|+++|.. +.+.+|+|+.+++|+++|||||+|.+.++|++|++ +++..++|+.|.|..+..
T Consensus        38 l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~  113 (124)
T 2kt5_A           38 LLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVAS  113 (124)
T ss_dssp             EEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEECC
T ss_pred             EEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCC
Confidence            334455444444444444333 34889999999899999999999999999999998 899999999999987764

>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.13  E-value=3.8e-11  Score=105.84  Aligned_cols=76  Identities=13%  Similarity=0.096  Sum_probs=59.8

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCC-CCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccCcc
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAF-GRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGE  416 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~-GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~~~  416 (612)
                      +++|+||+++.++++|+++|.. +.+.+|+|+.++. |+++|||||+|.+.++|++||.+|+..|+|+.|.|..+...
T Consensus        27 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~~  104 (114)
T 2cq4_A           27 TVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAE  104 (114)
T ss_dssp             EEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEEEHHHH
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEEEEecCCC
Confidence            3445555555555555555443 3588999998876 89999999999999999999988999999999999877543

>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.13  E-value=4.1e-11  Score=102.50  Aligned_cols=76  Identities=20%  Similarity=0.221  Sum_probs=59.9

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCC--C--CCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccC
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAF--G--RRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKAN  414 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~--G--rsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~  414 (612)
                      +++|+|||++.++++|+++|.. +.+..|+++.+++  |  +++|||||+|.+.++|++|++ +++..|+|+.|.|..+.
T Consensus         7 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~   86 (98)
T 2cpf_A            7 GLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISE   86 (98)
T ss_dssp             CEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEECSS
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcc
Confidence            4456666666666666655544 4588899988764  4  889999999999999999998 79999999999998876


Q ss_pred             cc
Q psy16116        415 GE  416 (612)
Q Consensus       415 ~~  416 (612)
                      ..
T Consensus        87 ~~   88 (98)
T 2cpf_A           87 RA   88 (98)
T ss_dssp             CS
T ss_pred             CC
Confidence            54

>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.13  E-value=8.3e-11  Score=102.03  Aligned_cols=75  Identities=25%  Similarity=0.230  Sum_probs=57.5

Q ss_pred             ceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC--CCCCcceEEEEeCCHHHHHHHHH-h-CCCccCceEEEEeccCcc
Q psy16116        342 PLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA--FGRRNGEAIVRFIDQEHRDMALK-R-HKHHIDKRYIEVTKANGE  416 (612)
Q Consensus       342 vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~--~GrsrG~AFVeF~S~EdA~kAL~-~-ng~~IggR~IeV~~s~~~  416 (612)
                      ++|+|||.+.++++|+++|.. +.+..|+|+.+.  +|+++|||||+|.+.++|++||+ + |+..|+|+.|.|..+...
T Consensus        18 l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~~a~~~   97 (107)
T 2cph_A           18 ILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWADSE   97 (107)
T ss_dssp             EEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEEECCCC
T ss_pred             EEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEEeCCCC
Confidence            335555554444444444433 348899998884  78999999999999999999997 6 899999999999887654

>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A

Probab=99.12  E-value=2.5e-11  Score=103.13  Aligned_cols=75  Identities=19%  Similarity=0.203  Sum_probs=58.6

Q ss_pred             ccceecCCCHHHHHhhHhhcccc-cCeeeEEEeeC-CCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccC
Q psy16116        340 LCPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLS-AFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKAN  414 (612)
Q Consensus       340 l~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d-~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~  414 (612)
                      .+++|+|||++.++++|+++|.. +.+..++++.+ .+|+++|||||+|.+.++|++||+ +|+..|+||.|+|..++
T Consensus        16 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~   93 (95)
T 2ek1_A           16 TVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS   93 (95)
T ss_dssp             EEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred             CEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence            35667777777776766666654 33555666555 468999999999999999999997 79999999999997764

>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}

Probab=99.12  E-value=3.5e-11  Score=103.55  Aligned_cols=74  Identities=14%  Similarity=0.072  Sum_probs=60.3

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCccch
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGEDF  418 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~e~  418 (612)
                      -++|+||+++.+++.++++|.. +.+.++++..     ++|||||+|.+++||++|++ +|+..++||.|+|..+++.++
T Consensus         9 wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~-----~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~e~~~   83 (89)
T 2wbr_A            9 WLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL-----NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPSENEV   83 (89)
T ss_dssp             EEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCCHHHH
T ss_pred             eEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC-----CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECCHHHH
Confidence            4567777777777777766654 5688888854     79999999999999999997 899999999999988765554


Q ss_pred             h
Q psy16116        419 I  419 (612)
Q Consensus       419 ~  419 (612)
                      .
T Consensus        84 ~   84 (89)
T 2wbr_A           84 Q   84 (89)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.12  E-value=9.4e-11  Score=100.60  Aligned_cols=74  Identities=20%  Similarity=0.068  Sum_probs=59.2

Q ss_pred             ccceecCCCHHHHHhhHh----hcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEecc
Q psy16116        340 LCPLVQNIWLSLLLNTIP----GYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKA  413 (612)
Q Consensus       340 l~vlV~nLp~~~~e~~fk----eff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s  413 (612)
                      .+++|+|||++.++++++    ++|.. +.+.+|+|+.++++  +|||||+|.+.++|++|++ +|+..++||.|.|..+
T Consensus        10 ~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~--rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a   87 (96)
T 2dgx_A           10 ADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY--QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLA   87 (96)
T ss_dssp             EEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST--TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC--CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence            355566666665555555    65554 45899999988877  8999999999999999997 8999999999999877


Q ss_pred             Cc
Q psy16116        414 NG  415 (612)
Q Consensus       414 ~~  415 (612)
                      ..
T Consensus        88 ~~   89 (96)
T 2dgx_A           88 TG   89 (96)
T ss_dssp             CC
T ss_pred             CC
Confidence            54

>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.12  E-value=1.3e-10  Score=102.16  Aligned_cols=71  Identities=21%  Similarity=0.173  Sum_probs=54.8

Q ss_pred             ecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCc
Q psy16116        344 VQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANG  415 (612)
Q Consensus       344 V~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~  415 (612)
                      |+||+.+.++++|+++|.. +.+.+|+++.++. +++|||||+|.+.++|++|++ +++..++||.|.|..+..
T Consensus        34 V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~  106 (109)
T 2err_A           34 VSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER-GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA  106 (109)
T ss_dssp             EESCCTTCCHHHHHHHGGGTCCCSCEEECCBTT-BCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred             EECCCCcCCHHHHHHHHHhcCCEEEEEEEECCC-CCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence            4555554444444444443 3488899988854 599999999999999999998 799999999999987754

>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.12  E-value=6.4e-11  Score=104.67  Aligned_cols=76  Identities=18%  Similarity=0.213  Sum_probs=59.5

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccCcc
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGE  416 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~~~  416 (612)
                      +++|+||+++.++++|+++|.. +.+..|+|+.++ +|+++|||||+|.+.++|++||+.++..|+||.|.|..+...
T Consensus        29 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~~~  106 (116)
T 1x4b_A           29 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAR  106 (116)
T ss_dssp             EEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECCSSC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEECCCC
Confidence            3445555555555555555443 348899999886 489999999999999999999988889999999999887654

>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.11  E-value=1.4e-10  Score=100.30  Aligned_cols=75  Identities=21%  Similarity=0.171  Sum_probs=58.5

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCcc
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGE  416 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~  416 (612)
                      +++|+|||.+.++++|+++|.. +.+..|+|+.++.+ ++|||||+|.+.++|++|++ +++..|+|+.|.|..+...
T Consensus        17 ~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~   93 (103)
T 2cq3_A           17 RLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATAR   93 (103)
T ss_dssp             EEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTT-TCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCSS
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC-CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcccC
Confidence            3445555555555555555544 45889999988765 89999999999999999997 7999999999999887654

>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.11  E-value=1e-10  Score=101.14  Aligned_cols=63  Identities=21%  Similarity=0.284  Sum_probs=51.8

Q ss_pred             HHHHhhHhhcccccCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccCcc
Q psy16116        350 SLLLNTIPGYEQVLGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGE  416 (612)
Q Consensus       350 ~~~e~~fkeff~~~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~~~  416 (612)
                      ++++++|+.|+   .+..|+|+.++ +|+++|||||+|.+.++|++||+ +++.|+|+.|.|..+...
T Consensus        30 ~~l~~~F~~~G---~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~g~~l~v~~a~~~   93 (103)
T 2cqg_A           30 QDLKEYFSTFG---EVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS-QRHMIDGRWCDCKLPNSK   93 (103)
T ss_dssp             HHHHHHHGGGS---CEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH-SCEEETTEEEEEECCCTT
T ss_pred             HHHHHHHHhcC---CeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH-cCCeeCCeEEEEEecCCC
Confidence            55555555554   48899999986 48999999999999999999998 577899999999887654

>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.11  E-value=1.9e-10  Score=101.72  Aligned_cols=76  Identities=16%  Similarity=0.065  Sum_probs=63.0

Q ss_pred             cccEEEEeCCCCCCC-----------HHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH
Q psy16116        437 AQVIIRMRGLPYECT-----------AKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS  505 (612)
Q Consensus       437 ~~~~VfV~nLP~s~t-----------e~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~  505 (612)
                      ...+|+|+||....+           +++|+++|++||        .+..|.| .+.  .++|||||+|.+.++|++|++
T Consensus        14 ~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G--------~v~~v~i-~~~--~~~G~afV~f~~~~~A~~Ai~   82 (112)
T 2dit_A           14 HERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFG--------QIRKLLL-FDR--HPDGVASVSFRDPEEADYCIQ   82 (112)
T ss_dssp             SCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTS--------CCSEEEE-ETT--CTTCEEEEECSCHHHHHHHHH
T ss_pred             CceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccC--------CEeEEEE-ecC--CCCEEEEEEECCHHHHHHHHH
Confidence            567899999944433           589999999999        3456755 443  489999999999999999995


Q ss_pred             -hCCcccCCEEEEEEecch
Q psy16116        506 -KHKESIGIRYIELFRSTT  523 (612)
Q Consensus       506 -~~~~~iggR~IeV~~as~  523 (612)
                       +|+..++||.|.|..+..
T Consensus        83 ~lng~~~~gr~l~v~~a~~  101 (112)
T 2dit_A           83 TLDGRWFGGRQITAQAWDG  101 (112)
T ss_dssp             HSTTCEETTEECEEEECCS
T ss_pred             HcCCCEECCcEEEEEEeCC
Confidence             799999999999998753

>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.11  E-value=8e-11  Score=101.42  Aligned_cols=76  Identities=16%  Similarity=0.128  Sum_probs=57.4

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCcc
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGE  416 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~  416 (612)
                      +++|+|||++.++++|+++|.. +.+..|+++.++ +|+++|||||+|.+.++|++|++ +|+..|+|+.|.|..+...
T Consensus        14 ~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~   92 (102)
T 1x5s_A           14 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKS   92 (102)
T ss_dssp             EEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEEECC
T ss_pred             EEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence            3345555555444444444433 348899998886 58899999999999999999995 8999999999999777543

>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.11  E-value=7.8e-11  Score=101.46  Aligned_cols=75  Identities=19%  Similarity=0.168  Sum_probs=62.2

Q ss_pred             ccceecCCCHHHHHhhHhhcccccCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCcc
Q psy16116        340 LCPLVQNIWLSLLLNTIPGYEQVLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGE  416 (612)
Q Consensus       340 l~vlV~nLp~~~~e~~fkeff~~~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~  416 (612)
                      .+++|+|||++.++++|+++|...  ..|+++.+.+|+++|||||+|.+.++|++||+ +++..|+|+.|.|..+...
T Consensus        16 ~~l~V~nLp~~~t~~~l~~~F~~~--g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~   91 (101)
T 2fc9_A           16 KTLVLSNLSYSATEETLQEVFEKA--TFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPR   91 (101)
T ss_dssp             SEEEEESCCTTCCHHHHHHHCSSC--SEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSSC
T ss_pred             CEEEEeCCCCCCCHHHHHHHHHhC--CEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCCC
Confidence            355677788777777777777643  35678888889999999999999999999998 8999999999999887654

>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A

Probab=99.11  E-value=7.1e-11  Score=99.72  Aligned_cols=74  Identities=15%  Similarity=0.147  Sum_probs=57.9

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCc
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANG  415 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~  415 (612)
                      +++|+|||.+.++++|+++|.. +.+..|++.++ +|+++|||||+|.+.++|++|++ +++..++|+.|.|..+..
T Consensus        10 ~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~-~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~   85 (92)
T 2dgv_A           10 QIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRN   85 (92)
T ss_dssp             EEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES-SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc-CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence            4456666655555555555443 35888988874 78999999999999999999997 799999999999977654

>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.11  E-value=2.9e-11  Score=98.60  Aligned_cols=72  Identities=18%  Similarity=0.215  Sum_probs=54.7

Q ss_pred             ceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEecc
Q psy16116        342 PLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKA  413 (612)
Q Consensus       342 vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s  413 (612)
                      ++|+|||.+.++++++++|.. +.+.+|.++.++ +|+++|||||+|.+.++|++|++..+..++||.|.|..+
T Consensus         3 l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~a   76 (77)
T 1uaw_A            3 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA   76 (77)
T ss_dssp             EEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEEEC
T ss_pred             EEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEEEEEEec
Confidence            445555555555555544443 347889999886 489999999999999999999986558999999998654

>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.11  E-value=4.4e-11  Score=99.70  Aligned_cols=73  Identities=8%  Similarity=0.010  Sum_probs=59.9

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEecc
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKA  413 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s  413 (612)
                      +++|+|||.+.++++|+++|.. +.+..|+++.++ +|+++|||||+|.+.++|++|++ +|+..++||.|++.+.
T Consensus         7 ~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~   82 (85)
T 1x4e_A            7 GLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP   82 (85)
T ss_dssp             EEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence            5557777777777777766654 458899998885 58999999999999999999997 8999999998887544

>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.11  E-value=6.5e-11  Score=101.98  Aligned_cols=76  Identities=16%  Similarity=0.055  Sum_probs=58.0

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCcc
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGE  416 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~  416 (612)
                      +++|+|||++.++++|+++|.. +.+.+|+|+.++ +|+++|||||+|.+.++|++|++ +|+..|+|+.|.|..+...
T Consensus        14 ~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~   92 (102)
T 2cqb_A           14 VLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAKPM   92 (102)
T ss_dssp             CEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred             EEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeCCCC
Confidence            3445555555445555544443 348889998885 58999999999999999999996 7999999999999877654

>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}

Probab=99.10  E-value=6.5e-11  Score=104.23  Aligned_cols=74  Identities=18%  Similarity=0.279  Sum_probs=56.8

Q ss_pred             ceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCc
Q psy16116        342 PLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANG  415 (612)
Q Consensus       342 vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~  415 (612)
                      ++|+||+.+.++++|+++|.. +.+..|+++.++ +|+++|||||+|.+.++|++|++ +++..|+||.|.|..+..
T Consensus        29 l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~  105 (108)
T 2jrs_A           29 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTE  105 (108)
T ss_dssp             EEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECSCS
T ss_pred             EEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEccc
Confidence            335555554444444444433 348899998885 58899999999999999999996 899999999999987754

>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.10  E-value=1.8e-10  Score=99.55  Aligned_cols=74  Identities=14%  Similarity=0.021  Sum_probs=55.9

Q ss_pred             ceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCcc
Q psy16116        342 PLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGE  416 (612)
Q Consensus       342 vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~  416 (612)
                      ++|+|||.+.++++|+++|.. +.+..|+|+.++.+ ++|||||+|.+.++|++||+ +++..|+|+.|.|..+...
T Consensus        18 l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~   93 (103)
T 2cqi_A           18 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS-NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTP   93 (103)
T ss_dssp             EEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS-SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCT
T ss_pred             EEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC-CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECCCC
Confidence            334455544444444444433 34889999888654 79999999999999999997 8999999999999887653

>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.10  E-value=4.3e-11  Score=102.36  Aligned_cols=75  Identities=20%  Similarity=0.223  Sum_probs=57.6

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeC-CCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCc
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLS-AFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANG  415 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d-~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~  415 (612)
                      +++|+|||++.++++|+++|.. +.+..++++.+ .+|+++|||||+|.+.++|++|++ +|+..|+||.|+|..+..
T Consensus        17 ~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~   94 (98)
T 2cqp_A           17 IIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGSG   94 (98)
T ss_dssp             EEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEESSC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcCC
Confidence            5557777776666666666654 33555555554 568999999999999999999995 799999999999987653

>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.10  E-value=8.5e-11  Score=103.27  Aligned_cols=76  Identities=17%  Similarity=0.215  Sum_probs=57.6

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCee--------eEEEeeC-CCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEE
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLG--------GVALCLS-AFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIE  409 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~--------~V~ii~d-~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~Ie  409 (612)
                      +++|+||+++.++++|+++|.. +.+.        .|+|+.+ .+|+++|||||+|.+.++|++||+ +|+..|+|+.|.
T Consensus        17 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~   96 (113)
T 2cpe_A           17 AIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLK   96 (113)
T ss_dssp             EEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETTEECE
T ss_pred             EEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCCCEEE
Confidence            3345555555555555544443 2355        5889888 468999999999999999999997 799999999999


Q ss_pred             EeccCcc
Q psy16116        410 VTKANGE  416 (612)
Q Consensus       410 V~~s~~~  416 (612)
                      |..+...
T Consensus        97 V~~a~~~  103 (113)
T 2cpe_A           97 VSLARKK  103 (113)
T ss_dssp             EECSSCC
T ss_pred             EEECCCC
Confidence            9887654

>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A

Probab=99.10  E-value=1.2e-10  Score=105.98  Aligned_cols=75  Identities=19%  Similarity=0.126  Sum_probs=60.7

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCc
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANG  415 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~  415 (612)
                      +++|+|||++.++++|+++|.. +.+.+|+++.++ +|+++|||||+|.+.++|++||+ +++..|+|+.|.|..+..
T Consensus        48 ~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a~~  125 (129)
T 2kxn_B           48 CLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSIT  125 (129)
T ss_dssp             CBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCCSS
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecC
Confidence            5556666666666666665554 458899999886 48999999999999999999997 899999999999977754

>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1

Probab=99.10  E-value=8.3e-11  Score=102.01  Aligned_cols=75  Identities=13%  Similarity=0.057  Sum_probs=58.8

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCC-CCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCc
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAF-GRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANG  415 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~-GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~  415 (612)
                      +++|+||+.+.++++|+++|.. +.+.+|.++.++. |+++|||||+|.+.++|++|++ +++..++|+.|.|..+..
T Consensus        25 ~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~  102 (106)
T 1p27_B           25 ILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFV  102 (106)
T ss_dssp             EEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEESEE
T ss_pred             EEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEeecC
Confidence            3445566655555555554443 4588999998865 8999999999999999999997 799999999999977643

>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A

Probab=99.09  E-value=2.3e-10  Score=103.26  Aligned_cols=83  Identities=13%  Similarity=0.088  Sum_probs=69.9

Q ss_pred             cccEEEEeCCCCC-----CCHHHHHHHHhcCCCCccccccCceeEEEeeCC-----CCCceeEEEEEeCCHHHHHHHHH-
Q psy16116        437 AQVIIRMRGLPYE-----CTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-----DGKATGDAFVLFEKEEEADKALS-  505 (612)
Q Consensus       437 ~~~~VfV~nLP~s-----~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-----~GrskG~AFV~F~s~edA~kAL~-  505 (612)
                      .+.+|+|+|+-..     --++||++.|++||        .+.+|+|+.+.     +++++|||||+|.+.++|.+|++ 
T Consensus        19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G--------~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~   90 (118)
T 3ue2_A           19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFG--------AVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQA   90 (118)
T ss_dssp             SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTS--------CEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHHHHHhccC--------CEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHH
Confidence            4678999998321     23799999999999        45779998875     35789999999999999999996 


Q ss_pred             hCCcccCCEEEEEEecchHHHH
Q psy16116        506 KHKESIGIRYIELFRSTTAEVQ  527 (612)
Q Consensus       506 ~~~~~iggR~IeV~~as~~e~~  527 (612)
                      +||..++||.|.|..++...+.
T Consensus        91 LnGr~f~GR~i~v~~~~~~~f~  112 (118)
T 3ue2_A           91 LNGRWFAGRKVVAEVYDQERFD  112 (118)
T ss_dssp             HTTCEETTEECEEEEECHHHHH
T ss_pred             HCCCEECCcEEEEEEcChHhcc
Confidence            8999999999999998876554

>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}

Probab=99.09  E-value=3.8e-10  Score=99.84  Aligned_cols=73  Identities=7%  Similarity=0.038  Sum_probs=58.2

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEecc
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKA  413 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s  413 (612)
                      +++|+||+++.++++|+++|.. +.+.+|+|+.++ +|+++|||||+|.+.++|++|++ +|+..|+||.|+|..+
T Consensus        42 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a  117 (118)
T 2khc_A           42 NLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLK  117 (118)
T ss_dssp             EEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEEC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence            4456666666666666655554 348899998885 58999999999999999999997 7999999999998654

>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.09  E-value=1.4e-10  Score=101.31  Aligned_cols=75  Identities=20%  Similarity=0.175  Sum_probs=57.7

Q ss_pred             ceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCC-CCCcceEEEEeCCHHHHHHHHH-hC------CCccCceEEEEec
Q psy16116        342 PLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAF-GRRNGEAIVRFIDQEHRDMALK-RH------KHHIDKRYIEVTK  412 (612)
Q Consensus       342 vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~-GrsrG~AFVeF~S~EdA~kAL~-~n------g~~IggR~IeV~~  412 (612)
                      ++|+|||++.++++|+++|.. +.+.+|+|+.++. |+++|||||+|.+.++|++||+ ++      +..|+|+.|.|..
T Consensus        18 l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~l~v~~   97 (111)
T 1x4h_A           18 VFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLKVDL   97 (111)
T ss_dssp             EEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCEEEEEC
T ss_pred             EEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEEEEEEE
Confidence            335555555555555544443 3488999988864 8899999999999999999997 77      8999999999988


Q ss_pred             cCcc
Q psy16116        413 ANGE  416 (612)
Q Consensus       413 s~~~  416 (612)
                      +...
T Consensus        98 a~~~  101 (111)
T 1x4h_A           98 AVTR  101 (111)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            7654

>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}

Probab=99.09  E-value=3.8e-11  Score=99.65  Aligned_cols=69  Identities=19%  Similarity=0.117  Sum_probs=52.9

Q ss_pred             cceecCCCHHH------HHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCce-EEEE
Q psy16116        341 CPLVQNIWLSL------LLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKR-YIEV  410 (612)
Q Consensus       341 ~vlV~nLp~~~------~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR-~IeV  410 (612)
                      +++|+|||++.      ++++|+++|.. +.+.+|++. ..+|+++|||||+|.+.++|++|++ +|+..++|| .|.|
T Consensus         3 ~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~-~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V   80 (81)
T 2krb_A            3 VIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV   80 (81)
T ss_dssp             EEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC-CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec-CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence            34455555544      55666655544 458888876 5679999999999999999999997 799999999 7776

>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.09  E-value=1.3e-10  Score=100.09  Aligned_cols=74  Identities=15%  Similarity=0.087  Sum_probs=62.1

Q ss_pred             cceecCCCHHHHHhhHhhcccccCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCcc
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQVLGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGE  416 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~  416 (612)
                      +++|+||+++.++++|+++|..  ...|+++.++ +|+++|||||+|.+.++|++||+ +++..|+|+.|.|..+...
T Consensus        17 ~l~V~nLp~~~t~~~l~~~F~~--~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~   92 (102)
T 2fc8_A           17 TLFVKGLSEDTTEETLKESFDG--SVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPK   92 (102)
T ss_dssp             SEEEECCCTTCCHHHHHHTSTT--CSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred             EEEEeCCCCccCHHHHHHHhcC--CeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCC
Confidence            5557788888888888887773  3478888875 68999999999999999999997 7999999999999887654

>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A

Probab=99.08  E-value=9.9e-11  Score=101.55  Aligned_cols=76  Identities=18%  Similarity=0.160  Sum_probs=57.0

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCC-CCCcceEEEEeCCHHHHHHHHH-hCCCcc---CceEEEEeccC
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAF-GRRNGEAIVRFIDQEHRDMALK-RHKHHI---DKRYIEVTKAN  414 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~-GrsrG~AFVeF~S~EdA~kAL~-~ng~~I---ggR~IeV~~s~  414 (612)
                      +++|+||+.+.++++|+++|.. +.+.+|+|+.++. |+++|||||+|.+.++|++|++ +|+..+   +|+.|.|..+.
T Consensus        15 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~   94 (106)
T 2dgp_A           15 KLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPAD   94 (106)
T ss_dssp             EEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEEEECC
Confidence            3345555554444444444433 3488999988875 8999999999999999999997 888887   88999998776


Q ss_pred             cc
Q psy16116        415 GE  416 (612)
Q Consensus       415 ~~  416 (612)
                      ..
T Consensus        95 ~~   96 (106)
T 2dgp_A           95 SE   96 (106)
T ss_dssp             CC
T ss_pred             cc
Confidence            54

>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}

Probab=99.08  E-value=6.4e-11  Score=105.77  Aligned_cols=73  Identities=15%  Similarity=0.158  Sum_probs=56.2

Q ss_pred             eecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccCc
Q psy16116        343 LVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANG  415 (612)
Q Consensus       343 lV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~~  415 (612)
                      +|+||+++.++++|+++|.. +.+.+|+++.++ +|+++|||||+|.+.++|++||++++..|+|+.|.|..+..
T Consensus        40 ~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~  114 (124)
T 2jwn_A           40 YVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPKRT  114 (124)
T ss_dssp             EEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEEESSC
T ss_pred             EEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCC
Confidence            34445444444444444433 348899998885 68999999999999999999998899999999999977653

>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.08  E-value=6.5e-11  Score=102.21  Aligned_cols=76  Identities=18%  Similarity=0.166  Sum_probs=58.9

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCcc
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGE  416 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~  416 (612)
                      +++|+||+++.++++|+++|.. +.+..|+++.++ +|+++|||||+|.+.++|++|++ +++..++|+.|.|..+...
T Consensus        10 ~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~   88 (104)
T 1p1t_A           10 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASE   88 (104)
T ss_dssp             CEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTCT
T ss_pred             EEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCCc
Confidence            3445555555555555544443 347889998885 68999999999999999999996 8999999999999887654

>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A

Probab=99.07  E-value=4.3e-11  Score=103.28  Aligned_cols=74  Identities=12%  Similarity=0.111  Sum_probs=60.2

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccCc
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANG  415 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~~  415 (612)
                      +++|+||+++.++++|+++|.. +.+.+|+++.+++|+++|||||+|.+.++|++|++ ++..|+|+.|.|..+..
T Consensus        11 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v~~a~~   85 (102)
T 2xs2_A           11 TVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLGPAIR   85 (102)
T ss_dssp             EEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEEEEEEE
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEEEECCc
Confidence            4556666666666666655544 45889999999999999999999999999999999 99999999999876653

>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}

Probab=99.07  E-value=1.1e-10  Score=101.89  Aligned_cols=73  Identities=18%  Similarity=0.095  Sum_probs=55.9

Q ss_pred             ceecCCCHHH------HHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCce-EEEEec
Q psy16116        342 PLVQNIWLSL------LLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKR-YIEVTK  412 (612)
Q Consensus       342 vlV~nLp~~~------~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR-~IeV~~  412 (612)
                      ++|+|||++.      ++++|+++|.. +.+.+|.|. ..+|+++|||||+|.+.++|++|++ +|+..|+|| .|.|..
T Consensus        18 l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~-~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~V~~   96 (105)
T 2nlw_A           18 IVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRVNL   96 (105)
T ss_dssp             EEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC-CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEEEEEC
T ss_pred             EEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee-CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceEEEEE
Confidence            3355555444      45555554443 448888887 5679999999999999999999998 799999999 999987


Q ss_pred             cCc
Q psy16116        413 ANG  415 (612)
Q Consensus       413 s~~  415 (612)
                      +..
T Consensus        97 a~~   99 (105)
T 2nlw_A           97 FTD   99 (105)
T ss_dssp             SCC
T ss_pred             cch
Confidence            754

>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*

Probab=99.06  E-value=1.3e-10  Score=101.62  Aligned_cols=75  Identities=17%  Similarity=0.050  Sum_probs=58.7

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCc
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANG  415 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~  415 (612)
                      +++|+|||.+.++++|+++|.. +.+.+|+++.++ +|+++|||||+|.+.++|++|++ +++..|+|+.|.|..+..
T Consensus        28 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~  105 (110)
T 1oo0_B           28 ILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFV  105 (110)
T ss_dssp             EEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEE
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEccc
Confidence            4445666655555555554443 458899998885 68999999999999999999997 899999999999977653

>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}

Probab=99.06  E-value=2.5e-10  Score=103.50  Aligned_cols=71  Identities=20%  Similarity=0.173  Sum_probs=53.6

Q ss_pred             ecCCCHHHHHhhHhhcccc-cCeee--EEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCC----ccCceEEEEeccC
Q psy16116        344 VQNIWLSLLLNTIPGYEQV-LGLGG--VALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKH----HIDKRYIEVTKAN  414 (612)
Q Consensus       344 V~nLp~~~~e~~fkeff~~-~~v~~--V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~----~IggR~IeV~~s~  414 (612)
                      |+||+++.++++|+++|.. +.+..  |+|++|+ +|+++|||||+|.+. +|++|++ +++.    .|+||.|.|..+.
T Consensus        28 V~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~l~V~~a~  106 (131)
T 2m2b_A           28 LRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKTINVEFAK  106 (131)
T ss_dssp             ECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCCCCCEECC
T ss_pred             EeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEEEEEEECC
Confidence            4455544444444444433 23644  9999998 799999999999999 9999996 8888    9999999997775


Q ss_pred             c
Q psy16116        415 G  415 (612)
Q Consensus       415 ~  415 (612)
                      .
T Consensus       107 ~  107 (131)
T 2m2b_A          107 G  107 (131)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.06  E-value=1.2e-10  Score=99.77  Aligned_cols=75  Identities=13%  Similarity=0.021  Sum_probs=57.2

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCee-eEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCceE----EEEec
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLG-GVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRY----IEVTK  412 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~-~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~----IeV~~  412 (612)
                      +++|+|||.+.++++|+++|.. +.+. +|+++.++ +|+++|||||+|.+.++|++|++ +|+..++|+.    |+|..
T Consensus        11 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~v~~   90 (99)
T 2div_A           11 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNY   90 (99)
T ss_dssp             EEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEECCEEE
T ss_pred             EEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeEEEee
Confidence            3445555555555555554443 3477 89999886 68999999999999999999998 7999999998    88876


Q ss_pred             cCc
Q psy16116        413 ANG  415 (612)
Q Consensus       413 s~~  415 (612)
                      +..
T Consensus        91 a~~   93 (99)
T 2div_A           91 ATY   93 (99)
T ss_dssp             TTC
T ss_pred             cCC
Confidence            653

>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}

Probab=99.05  E-value=6.2e-11  Score=99.84  Aligned_cols=75  Identities=19%  Similarity=0.098  Sum_probs=59.0

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCC-CCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCcc
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAF-GRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGE  416 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~-GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~  416 (612)
                      +++|+|||.+.++++|+++|.. +.+.+|+++.++. |+++|||||+|.+.+ |++|++ +|+..++||.|.|..+...
T Consensus         3 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~   80 (90)
T 2ki2_A            3 NIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK   80 (90)
T ss_dssp             EEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred             EEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence            3456667766666666666554 4588999998875 899999999999999 999997 7999999999999877653

>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.05  E-value=1.6e-10  Score=101.80  Aligned_cols=76  Identities=16%  Similarity=0.095  Sum_probs=60.1

Q ss_pred             cceecCCCHHHHHhhHh---hcccc-cCeeeEEEeeCCC----CCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEe
Q psy16116        341 CPLVQNIWLSLLLNTIP---GYEQV-LGLGGVALCLSAF----GRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVT  411 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fk---eff~~-~~v~~V~ii~d~~----GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~  411 (612)
                      +++|+|||++.++++|+   ++|.. +.+.+|+|..+..    ++++|||||+|.+.++|++||+ +|+..|+||.|.|.
T Consensus        17 ~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~   96 (111)
T 2cpi_A           17 LVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLKAS   96 (111)
T ss_dssp             CEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred             EEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEEEEE
Confidence            45566676666666665   55554 4588999988763    3677999999999999999998 69999999999998


Q ss_pred             ccCcc
Q psy16116        412 KANGE  416 (612)
Q Consensus       412 ~s~~~  416 (612)
                      .+..+
T Consensus        97 ~a~~k  101 (111)
T 2cpi_A           97 LGTTK  101 (111)
T ss_dssp             SCCCC
T ss_pred             ecccc
Confidence            87654

>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A

Probab=99.05  E-value=1.7e-10  Score=116.29  Aligned_cols=74  Identities=11%  Similarity=0.107  Sum_probs=65.9

Q ss_pred             cccEEEEeCCCCCC---------CHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-h
Q psy16116        437 AQVIIRMRGLPYEC---------TAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-K  506 (612)
Q Consensus       437 ~~~~VfV~nLP~s~---------te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~  506 (612)
                      ...+|||+||++++         +|++|+++|+.||        .++.|+|+.     ++|||||+|.+.++|++|++ +
T Consensus       133 ~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG--------~I~~v~v~~-----~kG~AFV~F~~~~~Ae~A~~am  199 (240)
T 3u1l_A          133 KNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLG--------DIDRIRYVE-----SKNCGFVKFKYQANAEFAKEAM  199 (240)
T ss_dssp             CCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTS--------CEEEEEEEG-----GGTEEEEEESSHHHHHHHHHHH
T ss_pred             CCceeecCCCChhhhcccccccCcHHHHHHHHHccC--------CEEEEEEEC-----CCCEEEEEeCCHHHHHHHHHHh
Confidence            45789999999998         7999999999999        457799883     68999999999999999996 8


Q ss_pred             CCccc------------CCEEEEEEecch
Q psy16116        507 HKESI------------GIRYIELFRSTT  523 (612)
Q Consensus       507 ~~~~i------------ggR~IeV~~as~  523 (612)
                      ++..|            +||.|.|..+..
T Consensus       200 ~g~~l~~~~~~e~~~~~~gr~L~V~wA~~  228 (240)
T 3u1l_A          200 SNQTLLLPSDKEWDDRREGTGLLVKWANE  228 (240)
T ss_dssp             TTCCCCCTTSTTGGGGGGSCCCEEEECC-
T ss_pred             CCCEEeccccccccccCCCCEEEEEEccC
Confidence            99999            899999999864

>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}

Probab=99.04  E-value=2.1e-10  Score=103.92  Aligned_cols=71  Identities=15%  Similarity=0.060  Sum_probs=54.3

Q ss_pred             ceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEec
Q psy16116        342 PLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTK  412 (612)
Q Consensus       342 vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~  412 (612)
                      ++|+|||.+.++++|+++|.. +.+..|+++.++ +|+++|||||+|.+.++|++|++ +++..|+||.|+|..
T Consensus        66 l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~  139 (140)
T 2ku7_A           66 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL  139 (140)
T ss_dssp             EEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred             EEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence            335555554444444444433 358899998884 58999999999999999999996 799999999999965

>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}

Probab=99.04  E-value=1.8e-10  Score=106.85  Aligned_cols=73  Identities=22%  Similarity=0.170  Sum_probs=56.7

Q ss_pred             eecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCc
Q psy16116        343 LVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANG  415 (612)
Q Consensus       343 lV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~  415 (612)
                      +|+||+++.++++|+++|.. +.+.+|+|+.++ +|+++|||||+|.+.++|++||+ +|+..|+||.|.|..+..
T Consensus        74 ~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~  149 (158)
T 2kn4_A           74 KVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARY  149 (158)
T ss_dssp             EEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECC
T ss_pred             EEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence            34555544444444444433 348899999886 69999999999999999999997 799999999999987764

>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.04  E-value=2.1e-10  Score=101.35  Aligned_cols=74  Identities=18%  Similarity=0.116  Sum_probs=54.9

Q ss_pred             ceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccCc
Q psy16116        342 PLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANG  415 (612)
Q Consensus       342 vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~~  415 (612)
                      |+|+||+++.++++|+++|.. +.+.+|+|+.++ +|+++|||||+|.+.++|++||+..+..|+|+.|.|..+..
T Consensus        20 l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~~   95 (116)
T 2cqd_A           20 IFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYL   95 (116)
T ss_dssp             EEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEECEEEESTT
T ss_pred             EEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCCCEEEEEEEccc
Confidence            334445444444444444433 348899999886 48999999999999999999998544489999999988754

>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1

Probab=99.03  E-value=3.9e-11  Score=103.37  Aligned_cols=64  Identities=19%  Similarity=0.123  Sum_probs=49.1

Q ss_pred             HHHHhhHhhcccccCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccCcc
Q psy16116        350 SLLLNTIPGYEQVLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGE  416 (612)
Q Consensus       350 ~~~e~~fkeff~~~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~~~  416 (612)
                      ++++++|+.|+.   +.++.+....+|+++|||||+|.+.++|++||++++..|+||.|.|..+...
T Consensus        32 ~~l~~~F~~~G~---v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~~   95 (101)
T 1fj7_A           32 AELKVAISELFA---KNDLAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGR   95 (101)
T ss_dssp             HHHHHHHHHHHH---HHTCCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCCEEECCSCC
T ss_pred             HHHHHHHHHhCC---cceEEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEEEEEEcCCC
Confidence            555555655554   4442233334689999999999999999999999999999999999877643

>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*

Probab=99.03  E-value=2.1e-10  Score=102.65  Aligned_cols=75  Identities=13%  Similarity=0.061  Sum_probs=59.3

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCc
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANG  415 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~  415 (612)
                      +|+|+||+++.++++|+++|.. +.+.+|.|+.++ +|+++|||||+|.+.++|++||+ +|+..|+|+.|.|..+..
T Consensus        24 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~  101 (126)
T 3ex7_B           24 ILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFV  101 (126)
T ss_dssp             EEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEESEE
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEecC
Confidence            4446666665555555555543 358899998886 68999999999999999999996 899999999999987754

>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}

Probab=99.02  E-value=1.3e-10  Score=96.92  Aligned_cols=75  Identities=16%  Similarity=0.101  Sum_probs=58.1

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCC-C-CCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCc
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAF-G-RRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANG  415 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~-G-rsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~  415 (612)
                      +++|+|||.+.++++|+++|.. +.+.+|.++.+.+ + +++|||||+|.+.++|++|++ +|+..++|+.|.|..+..
T Consensus         6 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~   84 (88)
T 4a8x_A            6 KVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLA   84 (88)
T ss_dssp             EEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECCC
Confidence            4446666666555555555544 4588899988874 3 489999999999999999998 799999999999977643

>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.01  E-value=3.1e-10  Score=98.87  Aligned_cols=78  Identities=17%  Similarity=0.009  Sum_probs=59.5

Q ss_pred             cccceecCCCHHHHHhhHhhcccc-cC-eeeEEEe-eCC-CCCCcceEEEEeCCHHHHHHHHH-hC--CCccCceEEEEe
Q psy16116        339 ALCPLVQNIWLSLLLNTIPGYEQV-LG-LGGVALC-LSA-FGRRNGEAIVRFIDQEHRDMALK-RH--KHHIDKRYIEVT  411 (612)
Q Consensus       339 ~l~vlV~nLp~~~~e~~fkeff~~-~~-v~~V~ii-~d~-~GrsrG~AFVeF~S~EdA~kAL~-~n--g~~IggR~IeV~  411 (612)
                      ..+++|+|||++.++++|+++|.. +. +.+|.++ .++ .|+++|||||+|.+.++|++|++ ++  +..++||.|.|.
T Consensus         8 ~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V~   87 (109)
T 2dis_A            8 NCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVD   87 (109)
T ss_dssp             SEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEEE
T ss_pred             CCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEEE
Confidence            335567777766666666665554 34 8888887 554 47899999999999999999998 54  488999999998


Q ss_pred             ccCcc
Q psy16116        412 KANGE  416 (612)
Q Consensus       412 ~s~~~  416 (612)
                      .+...
T Consensus        88 ~a~~~   92 (109)
T 2dis_A           88 WAEPE   92 (109)
T ss_dssp             ESCSS
T ss_pred             EcCCC
Confidence            77653

>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.01  E-value=4.7e-10  Score=98.61  Aligned_cols=74  Identities=11%  Similarity=0.053  Sum_probs=58.2

Q ss_pred             ccceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccC--------ceEEE
Q psy16116        340 LCPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHID--------KRYIE  409 (612)
Q Consensus       340 l~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~Ig--------gR~Ie  409 (612)
                      .+++|+|||.+.++++|+++|.. +.+..|+|+.+++|+++|||||+|.+.++|++||+ +|+..|+        ++.|.
T Consensus        26 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~~l~  105 (114)
T 1x5o_A           26 TNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLL  105 (114)
T ss_dssp             TEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSSCBE
T ss_pred             CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCCcee
Confidence            35557777777666667766654 45899999999999999999999999999999997 8998885        45555


Q ss_pred             Eecc
Q psy16116        410 VTKA  413 (612)
Q Consensus       410 V~~s  413 (612)
                      |..+
T Consensus       106 v~~a  109 (114)
T 1x5o_A          106 CKFS  109 (114)
T ss_dssp             EEEC
T ss_pred             EEcc
Confidence            5444

>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C

Probab=99.01  E-value=1.5e-10  Score=115.37  Aligned_cols=76  Identities=12%  Similarity=0.044  Sum_probs=60.5

Q ss_pred             cceecCCCHHHHHhhHhhcccc-c--CeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCc
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-L--GLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANG  415 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~--~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~  415 (612)
                      +|||+||+++.++++|+++|.. +  .+.+|+|++++ +|+++|||||+|.+.++|++||+ +|+..|+||.|+|..+..
T Consensus        70 ~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a~~  149 (229)
T 3q2s_C           70 ALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPVNK  149 (229)
T ss_dssp             EEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEECCH
T ss_pred             EEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEECCC
Confidence            3445666665555555555544 3  48899999996 69999999999999999999998 899999999999987765


Q ss_pred             c
Q psy16116        416 E  416 (612)
Q Consensus       416 ~  416 (612)
                      .
T Consensus       150 ~  150 (229)
T 3q2s_C          150 Q  150 (229)
T ss_dssp             H
T ss_pred             C
Confidence            4

>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.01  E-value=6.2e-10  Score=97.23  Aligned_cols=74  Identities=16%  Similarity=0.016  Sum_probs=54.6

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHH-HhCCCccCceEEEEeccCcc
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMAL-KRHKHHIDKRYIEVTKANGE  416 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL-~~ng~~IggR~IeV~~s~~~  416 (612)
                      +++|+||+.+.++++|+++|.. +.+..|.|..  +++++|||||+|.+.++|++|| .+|+..|+|+.|.|..+...
T Consensus        24 ~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~   99 (109)
T 1x4a_A           24 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKN--RRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSG   99 (109)
T ss_dssp             EEEEESCCTTCCHHHHHHHHGGGSCEEEEEECC--SSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCCC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE--CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcccC
Confidence            3345555555555555544443 3477888854  4668999999999999999999 48999999999999877653

>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A

Probab=98.99  E-value=2.5e-10  Score=101.93  Aligned_cols=73  Identities=11%  Similarity=0.029  Sum_probs=55.5

Q ss_pred             ccceecCCCHHHHHhhHhhcccc-c-CeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCc
Q psy16116        340 LCPLVQNIWLSLLLNTIPGYEQV-L-GLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANG  415 (612)
Q Consensus       340 l~vlV~nLp~~~~e~~fkeff~~-~-~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~  415 (612)
                      .+++|+|||++.++++|+++|.. + .+..+.+..   ++++|||||+|++.++|++|++ +|+..++||.|+|..+..
T Consensus        29 ~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~---~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~  104 (111)
T 2jvr_A           29 YRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT---RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDN  104 (111)
T ss_dssp             EEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS---CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc---CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence            35556667666666666665554 3 366776642   3589999999999999999996 799999999999987654

>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X

Probab=98.99  E-value=5.1e-10  Score=104.06  Aligned_cols=75  Identities=15%  Similarity=0.154  Sum_probs=59.4

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCC-CCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCc
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAF-GRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANG  415 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~-GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~  415 (612)
                      +|+|+||+++.++++|+++|.. +.+..|+|+.+++ |+++|||||+|.+.++|++||+ +++..|+|+.|.|..+..
T Consensus        41 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~  118 (156)
T 1h2v_Z           41 TLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAG  118 (156)
T ss_dssp             EEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEESC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence            4445566655555555555543 3588999999875 8899999999999999999998 799999999999988764

>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A

Probab=98.97  E-value=3.1e-10  Score=104.00  Aligned_cols=75  Identities=21%  Similarity=0.156  Sum_probs=59.3

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCc
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANG  415 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~  415 (612)
                      +|+|+|||.+.++++|+++|.. +.+..|+|+.++ +|+++|||||+|.+.++|++||+ +++..|+|+.|.|..+..
T Consensus        49 ~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~  126 (135)
T 2lea_A           49 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARY  126 (135)
T ss_dssp             CEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence            3446666665555555555544 458899998886 68999999999999999999997 799999999999987754

>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A

Probab=98.97  E-value=4.4e-10  Score=109.16  Aligned_cols=74  Identities=8%  Similarity=0.026  Sum_probs=60.3

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccC
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKAN  414 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~  414 (612)
                      +++|+|||++.++++|+++|.. |.+.+|+|.++.+|+++|||||+|++.++|++|++..+..++||.|.|....
T Consensus       111 ~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~  185 (193)
T 2voo_A          111 SVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKD  185 (193)
T ss_dssp             EEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETT
T ss_pred             EEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhH
Confidence            4556666666666666665554 4589999999999999999999999999999999977789999999997554

>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A

Probab=98.97  E-value=9.1e-10  Score=97.08  Aligned_cols=69  Identities=12%  Similarity=-0.050  Sum_probs=54.8

Q ss_pred             HHHhhHhhcccc-cCeeeEEEeeCCC--CCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCccchh
Q psy16116        351 LLLNTIPGYEQV-LGLGGVALCLSAF--GRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGEDFI  419 (612)
Q Consensus       351 ~~e~~fkeff~~-~~v~~V~ii~d~~--GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~e~~  419 (612)
                      ++++++++.|.. |.+.+|+|.++++  |+++|||||+|.+.++|++|++ +|+..++||.|.|..+....|.
T Consensus        25 d~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i~v~~a~~~~f~   97 (105)
T 2pe8_A           25 DLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFYNLDKFR   97 (105)
T ss_dssp             -CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCHHHHH
T ss_pred             HHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcCHHHhh
Confidence            344555543332 4589999998864  6899999999999999999996 8999999999999888766554

>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}

Probab=98.96  E-value=1.4e-09  Score=99.16  Aligned_cols=66  Identities=11%  Similarity=0.041  Sum_probs=50.1

Q ss_pred             HHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCcc
Q psy16116        349 LSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGE  416 (612)
Q Consensus       349 ~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~  416 (612)
                      .+++++.|.++|.. |.+.+|.+.  .+|+++|||||+|.+.++|++|++ +|+..|+||.|.|..+...
T Consensus        43 e~~L~~~L~~~F~~~G~I~~v~i~--~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~a~~~  110 (127)
T 2a3j_A           43 KEKLQALLYALASSQGDILDIVVD--LSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITFSETP  110 (127)
T ss_dssp             HHHHHHHHHHHHHHHSCEEEEEEC--CCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEECCCC
T ss_pred             HHHHHHHHHHHhccCCCeEEEEec--cCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEEccCc
Confidence            35555433344433 347777664  468999999999999999999996 8999999999999877653

>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}

Probab=98.51  E-value=6.4e-11  Score=104.83  Aligned_cols=78  Identities=19%  Similarity=0.195  Sum_probs=64.2

Q ss_pred             ccceecCCCHHHHHhhHhhcccc-cCeee--------EEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEE
Q psy16116        340 LCPLVQNIWLSLLLNTIPGYEQV-LGLGG--------VALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYI  408 (612)
Q Consensus       340 l~vlV~nLp~~~~e~~fkeff~~-~~v~~--------V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~I  408 (612)
                      .+++|+||+++.++++|+++|.. +.+..        |+++.++ +|+++|||||+|.+.++|++|++ +|+..++||.|
T Consensus         8 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l   87 (116)
T 2lcw_A            8 NTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPI   87 (116)
Confidence            35668888888887777777765 44666        8888885 58999999999999999999998 79999999999


Q ss_pred             EEeccCccc
Q psy16116        409 EVTKANGED  417 (612)
Q Consensus       409 eV~~s~~~e  417 (612)
                      .|..+....
T Consensus        88 ~V~~a~~~~   96 (116)
T 2lcw_A           88 KVSFATRRA   96 (116)
Confidence            998876543

>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.96  E-value=5.3e-10  Score=99.14  Aligned_cols=71  Identities=6%  Similarity=0.045  Sum_probs=53.9

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hC--CCccCceEEEEeccCcc
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RH--KHHIDKRYIEVTKANGE  416 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~n--g~~IggR~IeV~~s~~~  416 (612)
                      +++|+|||++.++++|+++|.. +.+.+|+|+++     +|||||+|++.++|++|++ ++  +..|+||.|.|..+..+
T Consensus        18 ~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~-----kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~~   92 (105)
T 1sjq_A           18 VIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHK   92 (105)
T ss_dssp             EEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSSS
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCCC
Confidence            4456666666555555555544 45889998864     7999999999999999998 44  46899999999887654

>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A

Probab=98.95  E-value=6.4e-10  Score=93.71  Aligned_cols=71  Identities=15%  Similarity=0.107  Sum_probs=55.2

Q ss_pred             cceecCCCHHHHHhhHhhcccccCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCcc
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQVLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGE  416 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~  416 (612)
                      +++|+|||++.++++++++|....+.++++.     +++|||||+|.+.++|++|++ +|+..++||.|.|..+...
T Consensus         7 ~l~V~nLp~~~t~~~l~~~F~~~~v~~~~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~   78 (88)
T 1wg1_A            7 GILVKNLPQDSNCQEVHDLLKDYDLKYCYVD-----RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTD   78 (88)
T ss_dssp             CEEEESCCSSCCHHHHHHHTCSSCCCCEEEE-----GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred             EEEEeCCCCCCCHHHHHHHHhhCCeEEEEEe-----CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCC
Confidence            4456666666666666665554356777773     689999999999999999997 8999999999999877553

>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1

Probab=98.95  E-value=3.2e-10  Score=96.53  Aligned_cols=72  Identities=17%  Similarity=0.228  Sum_probs=54.4

Q ss_pred             cceecCCCHHHHHhhHhhcccccCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCc
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQVLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANG  415 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~  415 (612)
                      +++|+|||++.++++|+++|...  ..|+++ ..+|+++|||||+|.+.++|++|++ +++..|+|+.|.|..+..
T Consensus        18 ~l~V~nL~~~~t~~~l~~~F~~~--g~v~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~   90 (96)
T 1fjc_A           18 TLLAKNLSFNITEDELKEVFEDA--LEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGE   90 (96)
T ss_dssp             EEEEESCCSSCCHHHHHHHHCSE--EEECCE-EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSS
T ss_pred             EEEEeCCCCCCCHHHHHHHHhhC--CcEEEe-CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCC
Confidence            45566666666666666655532  233444 5578999999999999999999998 799999999999987754

>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}

Probab=98.94  E-value=1.1e-09  Score=96.32  Aligned_cols=71  Identities=13%  Similarity=0.026  Sum_probs=55.0

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCC--ccCceEEEEeccCcc
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKH--HIDKRYIEVTKANGE  416 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~--~IggR~IeV~~s~~~  416 (612)
                      +++|+|||++.++++|+++|.. |.+.+|++++     +||||||+|++.++|.+|++ +++.  .|+||.|.|..++.+
T Consensus        23 ~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~-----~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~k   97 (100)
T 3r27_A           23 VVHIRGLIDGVVEADLVEALQEFGPISYVVVMP-----KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQ   97 (100)
T ss_dssp             EEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECSCS
T ss_pred             EEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc-----CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEecccc
Confidence            5567777776666666665554 5588888873     57999999999999999997 5655  488999999887654

>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}

Probab=98.93  E-value=8.7e-10  Score=94.85  Aligned_cols=68  Identities=9%  Similarity=-0.009  Sum_probs=50.3

Q ss_pred             ceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccC
Q psy16116        342 PLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKAN  414 (612)
Q Consensus       342 vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~  414 (612)
                      ++|+||+.+.++++|+++|.. +.+.+|++.     +++|||||+|.+.++|++|+. +|+..++|+.|.|..+.
T Consensus        30 l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~   99 (101)
T 2la4_A           30 AYIGNIPHFATEADLIPLFQNFGFILDFKHY-----PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK   99 (101)
T ss_dssp             EEEESCCTTCCHHHHHHHHHTTSCCSEEEEE-----TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred             EEEcCCCcccCHHHHHHHHHhCCCEEEEEEe-----cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence            334555544444444444433 347788886     578999999999999999996 79999999999997664

>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A

Probab=98.93  E-value=5.9e-09  Score=93.46  Aligned_cols=83  Identities=13%  Similarity=0.095  Sum_probs=66.3

Q ss_pred             ccEEEEeCCCCCC----------CHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-h
Q psy16116        438 QVIIRMRGLPYEC----------TAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-K  506 (612)
Q Consensus       438 ~~~VfV~nLP~s~----------te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~  506 (612)
                      +.+|.|+|+=-.-          -++||++.|++||        .+.+|.|.++   .++|||||+|.+.++|++|++ +
T Consensus         7 s~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG--------~V~~v~i~~~---~~~G~~fV~f~~~e~A~~Ai~~l   75 (114)
T 3s6e_A            7 TQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHG--------GVIHIYVDKN---SAQGNVYVKCPSIAAAIAAVNAL   75 (114)
T ss_dssp             CSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTT--------CCSEEEECTT---CTTCCEEEECSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCChHHccChhHHHHHHHHHHHHHhccC--------CEEEEEEecC---CCcEEEEEEECCHHHHHHHHHHh
Confidence            4578888863322          2468999999999        3456888654   258999999999999999996 8


Q ss_pred             CCcccCCEEEEEEecchHHHHHHhh
Q psy16116        507 HKESIGIRYIELFRSTTAEVQQVLN  531 (612)
Q Consensus       507 ~~~~iggR~IeV~~as~~e~~~~~~  531 (612)
                      ||..++||.|.|..+....+...-.
T Consensus        76 nG~~f~GR~i~v~~~~~~~y~~~fp  100 (114)
T 3s6e_A           76 HGRWFAGKMITAAYVPLPTYHNLFP  100 (114)
T ss_dssp             TTCEETTEECEEEEECHHHHHHHCG
T ss_pred             CCCEECCEEEEEEEEcHHHHHHhCc
Confidence            9999999999999998887765433

>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.92  E-value=1.3e-09  Score=95.44  Aligned_cols=70  Identities=14%  Similarity=0.136  Sum_probs=53.1

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCc-----eEEEEecc
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDK-----RYIEVTKA  413 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~Igg-----R~IeV~~s  413 (612)
                      +++|+|||++.++++|+++|.. +.+..|.|+.+      |||||+|.+.++|++||+ +|+..|+|     +.|+|..+
T Consensus        17 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a   90 (108)
T 1x4c_A           17 RVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVD   90 (108)
T ss_dssp             EEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEES
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeC
Confidence            3445555555555555554443 34888888765      899999999999999998 79999999     99999887


Q ss_pred             Ccc
Q psy16116        414 NGE  416 (612)
Q Consensus       414 ~~~  416 (612)
                      ...
T Consensus        91 ~~~   93 (108)
T 1x4c_A           91 GPR   93 (108)
T ss_dssp             SCC
T ss_pred             CCC
Confidence            654

>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...

Probab=98.92  E-value=3.4e-10  Score=96.43  Aligned_cols=74  Identities=11%  Similarity=0.075  Sum_probs=54.7

Q ss_pred             cceecCCCHHHHHhhHh----hcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccC
Q psy16116        341 CPLVQNIWLSLLLNTIP----GYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKAN  414 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fk----eff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~  414 (612)
                      +++|+|||.+.++++|+    ++|.. +.+.+|++..  +|+++|||||+|.+.++|++|++ +++..++|+.|.|..+.
T Consensus        10 ~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~   87 (97)
T 1nu4_A           10 TIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAK   87 (97)
T ss_dssp             EEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH--HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc--CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEEcc
Confidence            34455555544444444    55544 4477777763  57889999999999999999997 79999999999998776


Q ss_pred             cc
Q psy16116        415 GE  416 (612)
Q Consensus       415 ~~  416 (612)
                      ..
T Consensus        88 ~~   89 (97)
T 1nu4_A           88 TD   89 (97)
T ss_dssp             SC
T ss_pred             CC
Confidence            53

>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.92  E-value=2.9e-09  Score=93.32  Aligned_cols=62  Identities=11%  Similarity=0.105  Sum_probs=52.5

Q ss_pred             CCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCcccCCEEEEEEecc
Q psy16116        448 YECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALSKHKESIGIRYIELFRST  522 (612)
Q Consensus       448 ~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~~~~~~iggR~IeV~~as  522 (612)
                      ..+++++|+++|++||        .+..|+|+    ++++|||||+|.+.++|++|++. ...+.||.|.|..+.
T Consensus        27 ~~~te~~L~~~F~~~G--------~V~~v~i~----~~~rGfaFVeF~~~~~A~~Ai~~-~~~~~g~~l~V~~a~   88 (100)
T 2d9o_A           27 GGYSKDVLLRLLQKYG--------EVLNLVLS----SKKPGTAVVEFATVKAAELAVQN-EVGLVDNPLKISWLE   88 (100)
T ss_dssp             CSCCHHHHHHHHHTTS--------CEEEEEEE----SSSSSEEEEEESCHHHHHHHHHT-CCBCSSSBCEEECSS
T ss_pred             CCCCHHHHHHHHHhcC--------CEEEEEEc----cCCCCEEEEEECCHHHHHHHHHh-cCCCCCCeEEEEEcc
Confidence            4689999999999999        44668887    58999999999999999999986 344678999998754

>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}

Probab=98.91  E-value=9.2e-10  Score=105.56  Aligned_cols=64  Identities=19%  Similarity=0.199  Sum_probs=54.4

Q ss_pred             HHHHhhHhhcccccCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCcc
Q psy16116        350 SLLLNTIPGYEQVLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGE  416 (612)
Q Consensus       350 ~~~e~~fkeff~~~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~  416 (612)
                      ++++++|+.|+   .+..|.|..+++|+++|||||+|.+.++|++|++ +++..|+|+.|.|..+...
T Consensus       103 ~~L~~~F~~~G---~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~~~  167 (177)
T 2f3j_A          103 ADIQELFAEFG---TLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQ  167 (177)
T ss_dssp             HHHHHHHHHTS---CCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEESSG
T ss_pred             HHHHHHHHhcC---CeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEecCC
Confidence            55555555554   4789999999899999999999999999999998 8999999999999877543

>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.91  E-value=2e-09  Score=94.30  Aligned_cols=72  Identities=7%  Similarity=0.051  Sum_probs=55.9

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-h--CCCccCceEEEEeccCcc
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-R--HKHHIDKRYIEVTKANGE  416 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~--ng~~IggR~IeV~~s~~~  416 (612)
                      +++|+|||++.++++|+++|.. +.+.+|.|+++     +|||||+|++.++|++|++ +  ++..++||.|.|..+...
T Consensus        17 ~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~   91 (101)
T 2cq1_A           17 VLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG-----KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHK   91 (101)
T ss_dssp             EEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSCS
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcCcc
Confidence            4557777777777777766654 45888888653     7999999999999999997 3  567799999999887654


Q ss_pred             c
Q psy16116        417 D  417 (612)
Q Consensus       417 e  417 (612)
                      +
T Consensus        92 ~   92 (101)
T 2cq1_A           92 E   92 (101)
T ss_dssp             S
T ss_pred             c
Confidence            3

>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A

Probab=98.88  E-value=1.1e-09  Score=91.13  Aligned_cols=66  Identities=11%  Similarity=0.097  Sum_probs=48.3

Q ss_pred             ceecCCCH----HHHHhhHhhcccc-c-------CeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEE
Q psy16116        342 PLVQNIWL----SLLLNTIPGYEQV-L-------GLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIE  409 (612)
Q Consensus       342 vlV~nLp~----~~~e~~fkeff~~-~-------~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~Ie  409 (612)
                      ++|+|||+    ++++++|+.|+.. +       .+.++++.+     ++|||||+|.+.++|++|+.+|+..++||.|.
T Consensus         9 l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~-----~kg~afV~f~~~~~a~~A~~l~g~~~~g~~l~   83 (87)
T 2hzc_A            9 LYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ-----DKNFAFLEFRSVDETTQAMAFDGIIFQGQSLK   83 (87)
T ss_dssp             EEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECS-----SSSEEEEEESSHHHHHHHGGGTTCEETTEECE
T ss_pred             EEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecC-----CCcEEEEEcCCHHHHHHHHhcCCCEECCeEEE
Confidence            34444444    5555555555211 2       467777753     48999999999999999998899999999999


Q ss_pred             Eec
Q psy16116        410 VTK  412 (612)
Q Consensus       410 V~~  412 (612)
                      |.+
T Consensus        84 V~r   86 (87)
T 2hzc_A           84 IRR   86 (87)
T ss_dssp             EEC
T ss_pred             EeC
Confidence            864

>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.88  E-value=1.7e-09  Score=97.91  Aligned_cols=72  Identities=6%  Similarity=0.057  Sum_probs=56.6

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hC--CCccCceEEEEeccCcc
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RH--KHHIDKRYIEVTKANGE  416 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~n--g~~IggR~IeV~~s~~~  416 (612)
                      +++|+|||++.++++|+++|.. +.+.+|+|+.+     +|||||+|++.++|++|++ ++  +..|+||.|.|..+...
T Consensus        33 ~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~-----kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~k  107 (119)
T 2ad9_A           33 VIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHK  107 (119)
T ss_dssp             EEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG-----GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSSS
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccCC
Confidence            5567777777777777766654 45889998864     7999999999999999997 44  46799999999888665


Q ss_pred             c
Q psy16116        417 D  417 (612)
Q Consensus       417 e  417 (612)
                      +
T Consensus       108 ~  108 (119)
T 2ad9_A          108 E  108 (119)
T ss_dssp             S
T ss_pred             C
Confidence            4

>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.88  E-value=1.5e-09  Score=95.41  Aligned_cols=73  Identities=15%  Similarity=0.190  Sum_probs=51.9

Q ss_pred             cceecCCCH----HHHHhhHhhcccccCe-eeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccC
Q psy16116        341 CPLVQNIWL----SLLLNTIPGYEQVLGL-GGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKAN  414 (612)
Q Consensus       341 ~vlV~nLp~----~~~e~~fkeff~~~~v-~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~  414 (612)
                      +++|+|||.    ++++++|+.|+....+ ..+.+.   +|+++|||||+|.+.++|++|++ +++..|+|+.|.|..+.
T Consensus        27 ~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~---~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~  103 (115)
T 2cpx_A           27 VLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM---TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGK  103 (115)
T ss_dssp             EEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE---CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEECC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC---CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEcc
Confidence            344555554    4555555555542111 334443   78999999999999999999997 79999999999998876


Q ss_pred             cc
Q psy16116        415 GE  416 (612)
Q Consensus       415 ~~  416 (612)
                      ..
T Consensus       104 ~~  105 (115)
T 2cpx_A          104 NK  105 (115)
T ss_dssp             CC
T ss_pred             CC
Confidence            54

>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.88  E-value=2.8e-09  Score=89.87  Aligned_cols=69  Identities=12%  Similarity=0.068  Sum_probs=51.6

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCcc
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGE  416 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~  416 (612)
                      +++|+||+.+.++++|+++|.. +.+.+|++.       +|||||+|.+.++|++|++ +++..++|+.|.|..+...
T Consensus        10 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~   80 (90)
T 2dnq_A           10 KLFIGNLPREATEQEIRSLFEQYGKVLECDII-------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNK   80 (90)
T ss_dssp             EEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCC
Confidence            3445555555555555544443 347888886       6899999999999999995 8999999999999887654

>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.88  E-value=1.3e-09  Score=93.36  Aligned_cols=60  Identities=13%  Similarity=0.138  Sum_probs=46.5

Q ss_pred             HHHHHhhHhhcccccCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCc
Q psy16116        349 LSLLLNTIPGYEQVLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANG  415 (612)
Q Consensus       349 ~~~~e~~fkeff~~~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~  415 (612)
                      .++++++|+.|+.   +. ++++.   ++++|||||+|.+.++|++|++ +|+..|+|+.|.|..+..
T Consensus        33 ~~~l~~~F~~~G~---v~-~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~   93 (97)
T 2e5j_A           33 VSDLKRALRELGS---VP-LRLTW---QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQ   93 (97)
T ss_dssp             HHHHHHHHHHTTC---CC-SEEEE---ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCC
T ss_pred             HHHHHHHHHhcCC---EE-EEEEc---CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence            3555666655554   33 45543   4789999999999999999996 799999999999987754

>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A

Probab=98.88  E-value=2.2e-09  Score=94.48  Aligned_cols=67  Identities=19%  Similarity=0.160  Sum_probs=50.5

Q ss_pred             ceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCc
Q psy16116        342 PLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANG  415 (612)
Q Consensus       342 vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~  415 (612)
                      ++|+||+++.++++|+++|.. +.+.+|.++       +|||||+|.+.++|++|++ +++..++|+.|.|..+..
T Consensus        34 l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~  102 (108)
T 2jvo_A           34 LFVRPFPLDVQESELNEIFGPFGPMKEVKIL-------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKL  102 (108)
T ss_dssp             EEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSC
T ss_pred             EEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence            335555555444445444443 347788886       7999999999999999997 799999999999987754

>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A

Probab=98.87  E-value=2.2e-09  Score=101.07  Aligned_cols=75  Identities=17%  Similarity=0.050  Sum_probs=58.8

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCc
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANG  415 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~  415 (612)
                      +|+|+||+++.++++|+++|.. +.+..|.|+.++ +|+++|||||+|.+.++|++||+ +|+..|+|+.|.|..+..
T Consensus        74 ~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~  151 (165)
T 1rk8_A           74 ILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFV  151 (165)
T ss_dssp             EEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEE
T ss_pred             EEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecC
Confidence            4445566655555555554443 458899999885 68899999999999999999997 899999999999977654

>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3

Probab=98.87  E-value=1.3e-09  Score=95.70  Aligned_cols=51  Identities=14%  Similarity=0.170  Sum_probs=46.6

Q ss_pred             cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEecc
Q psy16116        363 LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKA  413 (612)
Q Consensus       363 ~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s  413 (612)
                      |.+.+|+|.++..|+++|||||+|.+.++|++|++ +||..++||.|.|..+
T Consensus        52 G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v~~s  103 (104)
T 1jmt_A           52 GEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELS  103 (104)
T ss_dssp             CCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCEEEC
T ss_pred             CceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEEEEEc
Confidence            56999999999889999999999999999999996 8999999999988643

>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.86  E-value=2.9e-09  Score=91.34  Aligned_cols=71  Identities=13%  Similarity=0.056  Sum_probs=53.7

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCcc
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGE  416 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~  416 (612)
                      +++|+|||.+.++++|+++|.. +.+..|++.+     ++|||||+|.+.++|++|++ +++..|+|+.|.|..+...
T Consensus        17 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~-----~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~   89 (99)
T 2cpj_A           17 RLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHK-----DKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHS   89 (99)
T ss_dssp             EEEEESCCTTCCHHHHHHHTSTTCCCSEEEEET-----TTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCC
T ss_pred             EEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEec-----CCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCC
Confidence            3445556555555555555544 3478888863     47999999999999999995 7999999999999887654

>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.86  E-value=2.6e-09  Score=93.96  Aligned_cols=72  Identities=10%  Similarity=0.006  Sum_probs=52.2

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCC--CccCceEEEEeccCcc
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHK--HHIDKRYIEVTKANGE  416 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng--~~IggR~IeV~~s~~~  416 (612)
                      +++|+||+++.++++|+++|.. +.+.+|+|++     .+|||||+|++.++|++|++ +++  ..|+||.|.|..+...
T Consensus        17 ~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~-----~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~~   91 (104)
T 1wex_A           17 VVHVRGLCESVVEADLVEALEKFGTICYVMMMP-----FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSK   91 (104)
T ss_dssp             EEEEESCCSSCCHHHHHHHHTTTSCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSSS
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEC-----CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccCc
Confidence            4445556655555555555443 4588888864     37999999999999999997 443  4599999999887664


Q ss_pred             c
Q psy16116        417 D  417 (612)
Q Consensus       417 e  417 (612)
                      +
T Consensus        92 ~   92 (104)
T 1wex_A           92 R   92 (104)
T ss_dssp             S
T ss_pred             c
Confidence            4

>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.86  E-value=2.6e-09  Score=93.41  Aligned_cols=71  Identities=13%  Similarity=0.048  Sum_probs=52.4

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCcc
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGE  416 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~  416 (612)
                      +++|+||+.+.++++|+++|.. +.+..|+|+.+     +|||||+|.+.++|++|++ +++..|+|+.|.|..+...
T Consensus        27 ~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~   99 (109)
T 1x4g_A           27 TVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKES   99 (109)
T ss_dssp             EEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-----CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCC
Confidence            3345555544444444444433 34888888765     7999999999999999995 7999999999999877654

>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.85  E-value=3e-09  Score=88.36  Aligned_cols=68  Identities=12%  Similarity=0.117  Sum_probs=49.9

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-h-CCCccCceEEEEecc
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-R-HKHHIDKRYIEVTKA  413 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~-ng~~IggR~IeV~~s  413 (612)
                      +++|+|||.+.++++|+++|.. +.+.+|+++.     ++|||||+|.+.++|++|++ + ++..++|+.|.|..+
T Consensus        14 ~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~-----~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~a   84 (85)
T 2ytc_A           14 TLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ-----RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWG   84 (85)
T ss_dssp             CEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG-----GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEEC
T ss_pred             EEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC-----CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEec
Confidence            3345555554444444444433 3488888875     47999999999999999998 6 889999999988654

>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A

Probab=98.85  E-value=3.3e-09  Score=91.43  Aligned_cols=56  Identities=9%  Similarity=0.143  Sum_probs=45.4

Q ss_pred             HHHHhhHhhcccccCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCc
Q psy16116        350 SLLLNTIPGYEQVLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANG  415 (612)
Q Consensus       350 ~~~e~~fkeff~~~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~  415 (612)
                      ++++++|+.|+   .+.+|++       ++|||||+|.+.++|++|++ +++..++|+.|.|..+..
T Consensus        38 ~~L~~~F~~~G---~v~~v~i-------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~   94 (97)
T 2xnq_A           38 EDLFRIFSPYG---HIMQINI-------KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSS   94 (97)
T ss_dssp             HHHHHHHGGGS---CEEEEEE-------CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCC
T ss_pred             HHHHHHHHhcC---CEEEEEE-------eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCC
Confidence            55555555554   4778877       37999999999999999997 899999999999977643

>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.85  E-value=3.1e-09  Score=90.82  Aligned_cols=70  Identities=10%  Similarity=0.023  Sum_probs=51.4

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccC--ceEEEEeccCc
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHID--KRYIEVTKANG  415 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~Ig--gR~IeV~~s~~  415 (612)
                      +++|+||+.+.++++|+++|.. +.+.+|.+..+     +|||||+|.+.++|++|++ +|+..|+  |+.|.|..+..
T Consensus        19 ~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~   92 (97)
T 1why_A           19 RLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG-----DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKS   92 (97)
T ss_dssp             CEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS-----SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC-----CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCC
Confidence            3445555555444444444443 34788887643     7899999999999999997 8999999  99999987754

>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.84  E-value=2.7e-09  Score=90.79  Aligned_cols=71  Identities=17%  Similarity=0.134  Sum_probs=50.9

Q ss_pred             ceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccCcc
Q psy16116        342 PLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGE  416 (612)
Q Consensus       342 vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~~~  416 (612)
                      ++|+|||++.++++|+++|.. +.+.+| +....+|+   ||||+|.+.++|++||++++..|+||.|.|..+...
T Consensus        11 l~V~nl~~~~t~~~l~~~F~~~G~v~~v-~~~~~~g~---~afV~f~~~~~a~~ai~l~g~~~~g~~l~V~~a~~~   82 (94)
T 2e5g_A           11 VFVSGFPRGVDSAQLSEYFLAFGPVASV-VMDKDKGV---FAIVEMGDVGAREAVLSQSQHSLGGHRLRVRPREQK   82 (94)
T ss_dssp             EEEECCCTTCCHHHHHHHGGGTSCEEEE-EECSSSCC---EEEEEESSHHHHHHHHTCSCCEETTEECCCBCSCCS
T ss_pred             EEEECCCCCCCHHHHHHHHHhcCCeEEE-EEcCCCCc---EEEEEECCHHHHHHHHhcCCeEECCEEEEEEECCcC
Confidence            345555555555555555543 346666 33333454   999999999999999999999999999999876544

>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A

Probab=98.84  E-value=4.1e-09  Score=92.79  Aligned_cols=73  Identities=8%  Similarity=0.046  Sum_probs=59.2

Q ss_pred             CCHHHHHhhHhhcccc-cCeeeEEEeeCCCC---CCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCccchh
Q psy16116        347 IWLSLLLNTIPGYEQV-LGLGGVALCLSAFG---RRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGEDFI  419 (612)
Q Consensus       347 Lp~~~~e~~fkeff~~-~~v~~V~ii~d~~G---rsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~e~~  419 (612)
                      ..++++++++++.|.. +.+.+|+|.++.++   +++|+|||+|++.++|++|++ +||..++||.|.|.....+.+.
T Consensus        23 ~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f~GR~i~v~~~~~~~f~  100 (105)
T 3v4m_A           23 EEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDPDSYH  100 (105)
T ss_dssp             HHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECHHHHH
T ss_pred             HHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEeCHHHHh
Confidence            3456677777754443 66999999888754   689999999999999999996 8999999999999887765543

>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.84  E-value=4.1e-09  Score=88.83  Aligned_cols=69  Identities=10%  Similarity=0.042  Sum_probs=51.0

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCcc
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGE  416 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~  416 (612)
                      +++|+|||.+.++++|+++|.. +.+..|+++       +|||||+|.+.++|++|++ +++..++|+.|.|..+...
T Consensus        11 ~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~-------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~   81 (90)
T 2dnp_A           11 KIFVGNVSAACTSQELRSLFERRGRVIECDVV-------KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKG   81 (90)
T ss_dssp             CEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC-------SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCC
Confidence            3445555555544545444443 347888885       4599999999999999997 8999999999999877653

>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.84  E-value=3e-09  Score=94.13  Aligned_cols=71  Identities=13%  Similarity=-0.036  Sum_probs=50.6

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCC----CCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEecc
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAF----GRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKA  413 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~----GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s  413 (612)
                      +++|+||+++.++++|+++|.. +.+. ++++.+..    |+++|||||+|++.++|++||+.- ..++|+.+.+..+
T Consensus        10 ~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~-~~~~G~~~~~~~~   85 (114)
T 2dnl_A           10 KVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC-LEEDGKLYLCVSS   85 (114)
T ss_dssp             CEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS-EEETTEEEEEECC
T ss_pred             EEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh-hhcCCcEEEeccC
Confidence            4556667766666666666655 3355 67766653    799999999999999999999843 2367777766433

>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.84  E-value=3.5e-09  Score=93.12  Aligned_cols=70  Identities=9%  Similarity=-0.009  Sum_probs=56.3

Q ss_pred             cceecCCCH-HHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCC--CccCceEEEEeccCc
Q psy16116        341 CPLVQNIWL-SLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHK--HHIDKRYIEVTKANG  415 (612)
Q Consensus       341 ~vlV~nLp~-~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng--~~IggR~IeV~~s~~  415 (612)
                      +++|+|||+ +.++++|+++|.. +.+.+|+|+++     +|||||+|++.++|++|++ +++  ..|+||.|.|..+..
T Consensus        17 ~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~   91 (102)
T 1x4d_A           17 VVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK-----INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQK   91 (102)
T ss_dssp             EEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS-----SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECC
T ss_pred             EEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCC
Confidence            566888888 7777777776665 55899998753     5899999999999999997 454  459999999987764

>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*

Probab=98.82  E-value=4.6e-09  Score=111.11  Aligned_cols=62  Identities=15%  Similarity=0.197  Sum_probs=53.1

Q ss_pred             cccEEEEeC--CCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCccc
Q psy16116        437 AQVIIRMRG--LPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESI  511 (612)
Q Consensus       437 ~~~~VfV~n--LP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~i  511 (612)
                      ...+|||+|  |++.+||++|+++|++||        .+++|.+..     +||||||+|.+.++|++|++ +||..+
T Consensus        17 ps~~l~VgN~gl~~~~te~~L~~~F~~~G--------~V~~v~~~~-----~kgfaFV~f~~~~~A~~Ai~~lnG~~~   81 (345)
T 3tht_A           17 ATQSLVVANGGLGNGVSRNQLLPVLEKCG--------LVDALLMPP-----NKPYSFARYRTTEESKRAYVTLNGKEV   81 (345)
T ss_dssp             CCSEEEEETCSGGGTCCHHHHHHHHHTTS--------CEEEEECCT-----TCSEEEEEESSHHHHHHHHHHTTTCEE
T ss_pred             CCCEEEEEcCCCCCCCCHHHHHHHHHhcC--------CeEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCcc
Confidence            456799999  689999999999999999        445666642     57999999999999999996 799876

>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A

Probab=98.80  E-value=6.3e-09  Score=90.02  Aligned_cols=68  Identities=15%  Similarity=0.104  Sum_probs=50.4

Q ss_pred             ceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCcc
Q psy16116        342 PLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGE  416 (612)
Q Consensus       342 vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~  416 (612)
                      ++|+||+.+.++++|+++|.. +.+.+|+++       +|||||+|.+.++|++|++ +++..|+|+.|.|..+...
T Consensus        14 l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~-------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~   83 (103)
T 2dgu_A           14 LFVRNLANTVTEEILEKAFSQFGKLERVKKL-------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPP   83 (103)
T ss_dssp             EEEECCCTTCCHHHHHHHHHHHSCEEEEEEC-------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred             EEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCC
Confidence            345555554444444444433 347788875       5699999999999999998 7999999999999887654

>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A

Probab=98.80  E-value=3.4e-09  Score=97.79  Aligned_cols=74  Identities=22%  Similarity=0.150  Sum_probs=57.1

Q ss_pred             CCcEeecCCCCCCCcccceecCCCHHHHHhhHhhcccccCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCcc
Q psy16116        325 TPTVYTIPTPGNPVALCPLVQNIWLSLLLNTIPGYEQVLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHI  403 (612)
Q Consensus       325 ~~tvfV~~l~~~~~~l~vlV~nLp~~~~e~~fkeff~~~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~I  403 (612)
                      ..+|||++++....          .++++++|+.|+   .+.+|+++.+    ++|||||+|.+.++|++|++ +|+..|
T Consensus        73 ~~~l~V~nl~~~~t----------~~~l~~~F~~~G---~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~  135 (150)
T 2i2y_A           73 DCKVYVGNLGNNGN----------KTELERAFGYYG---PLRSVWVARN----PPGFAFVEFEDPRDAADAVRELDGRTL  135 (150)
T ss_dssp             SCEEEEESCCSCCS----------CHHHHHHHHHHS---CEEEEEECSS----SCSEEEEEESSHHHHHHHHHHHSSSCS
T ss_pred             CCEEEEeCCCCCCC----------HHHHHHHHHhhC---CEEEEEEeeC----CCcEEEEEECCHHHHHHHHHHcCCCEE
Confidence            45677655443322          366666666665   4888998765    68999999999999999997 899999


Q ss_pred             CceEEEEeccCc
Q psy16116        404 DKRYIEVTKANG  415 (612)
Q Consensus       404 ggR~IeV~~s~~  415 (612)
                      +||.|.|..+..
T Consensus       136 ~g~~l~v~~a~~  147 (150)
T 2i2y_A          136 CGCRVRVELSNG  147 (150)
T ss_dssp             SSSCCEEEECCC
T ss_pred             CCeEEEEEEcCC
Confidence            999999977654

>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}

Probab=98.80  E-value=2.4e-09  Score=98.03  Aligned_cols=73  Identities=16%  Similarity=0.124  Sum_probs=52.1

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeee--------EEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEE
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGG--------VALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEV  410 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~--------V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV  410 (612)
                      +++|+||+++.++++|+++|.. +.+..        |++.  .+|+++|||||+|.+.++|++||. +|+..|+||.|.|
T Consensus        47 ~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~--~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~V  124 (143)
T 3egn_A           47 RIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLM--KEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVV  124 (143)
T ss_dssp             EEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEE--EETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEECEE
T ss_pred             EEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEec--cCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEEE
Confidence            4445555555544444444433 22333        3332  478999999999999999999998 8999999999999


Q ss_pred             eccCc
Q psy16116        411 TKANG  415 (612)
Q Consensus       411 ~~s~~  415 (612)
                      ..+..
T Consensus       125 ~~a~~  129 (143)
T 3egn_A          125 QFARS  129 (143)
T ss_dssp             EECCC
T ss_pred             EECCC
Confidence            87754

>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.79  E-value=3.1e-08  Score=84.86  Aligned_cols=59  Identities=22%  Similarity=0.175  Sum_probs=46.3

Q ss_pred             HHHHhhHhhcccccCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCcc
Q psy16116        350 SLLLNTIPGYEQVLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGE  416 (612)
Q Consensus       350 ~~~e~~fkeff~~~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~  416 (612)
                      ++++++|+.|+. +.+..|++       .+|||||+|.+.++|++|++ +|+..|+|+.|.|..+...
T Consensus        30 ~~l~~~F~~~g~-g~v~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~   89 (99)
T 2cpd_A           30 EMIEKEFNNIKP-GAVERVKK-------IRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPV   89 (99)
T ss_dssp             HHHHHHHHTTST-TCEEEEEE-------CSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCCC
T ss_pred             HHHHHHHHhcCC-cceEEEEE-------eCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCCC
Confidence            556666666532 34666665       36899999999999999998 8999999999999877653

>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.78  E-value=3e-09  Score=90.06  Aligned_cols=66  Identities=20%  Similarity=0.199  Sum_probs=47.6

Q ss_pred             eecCCCH----HHHHhhHhhcccccCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCC-CccCceEEEEeccCcc
Q psy16116        343 LVQNIWL----SLLLNTIPGYEQVLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHK-HHIDKRYIEVTKANGE  416 (612)
Q Consensus       343 lV~nLp~----~~~e~~fkeff~~~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng-~~IggR~IeV~~s~~~  416 (612)
                      +|+||+.    ++++++|+.|+..  +..+.+      +++|||||+|.+.++|++|++ +|+ ..|+|+.|.|..+...
T Consensus        12 ~V~nLp~~~t~~~l~~~F~~~G~v--v~~~~~------~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~   83 (93)
T 2cqh_A           12 YIGNLSPAVTADDLRQLFGDRKLP--LAGQVL------LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSK   83 (93)
T ss_dssp             EEECCCTTCCHHHHHHHHHHTTCC--CSSCEE------EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCCC
T ss_pred             EEeCCCCCCCHHHHHHHHHHcCCc--eEEEEE------cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccCc
Confidence            3444444    5555555555431  344444      258999999999999999997 898 8999999999877653

>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.78  E-value=3.7e-09  Score=93.37  Aligned_cols=71  Identities=20%  Similarity=0.076  Sum_probs=54.9

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCcc
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGE  416 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~  416 (612)
                      +++|+|||++.++++|+++|.. +.+..|.|.     +++|||||+|.+.++|++|++ +|+..++||.|.|..+...
T Consensus        12 ~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~   84 (111)
T 1whx_A           12 VILAKNLPAGTLAAEIQETFSRFGSLGRVLLP-----EGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG   84 (111)
T ss_dssp             EEEEESCCTTCCHHHHHHHHHTTSCEEEEECC-----SSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEe-----CCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence            4556666666666666665544 447777775     367999999999999999997 8999999999999877553

>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.77  E-value=1.2e-08  Score=86.36  Aligned_cols=69  Identities=12%  Similarity=0.007  Sum_probs=51.1

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCcc
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGE  416 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~  416 (612)
                      +++|+|||.+.++++|+++|.. +.+.+|.++       +|||||+|.+.++|++|++ +|+..|+|+.|.|..+...
T Consensus        12 ~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~-------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~   82 (92)
T 2dgt_A           12 KLHVGNISPTCTNQELRAKFEEYGPVIECDIV-------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR   82 (92)
T ss_dssp             EEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC-------SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE-------CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCC
Confidence            3445555555555555544443 347788885       4599999999999999996 7999999999999887654

>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}

Probab=98.77  E-value=3.4e-09  Score=90.06  Aligned_cols=70  Identities=11%  Similarity=-0.004  Sum_probs=49.3

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccCc
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANG  415 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~~  415 (612)
                      +++|+|||++.++++|+++|.. +.+.+|+|+++    ++|||||+|++.++|+++.. ....++|+.|.|..+..
T Consensus        13 ~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~----srGfaFV~F~~~~~A~~~~~-~~~~~~g~~v~v~~a~~   83 (89)
T 3d2w_A           13 KVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP----FRAFAFVTFADDKVAQSLCG-EDLIIKGISVHISNAEP   83 (89)
T ss_dssp             EEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS----CCSEEEEEESCHHHHHHHTT-CEEEETTEEEEEEECC-
T ss_pred             EEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC----CCCEEEEEECCHHHHHHHcC-CCcccCCEEEEEEEcCC
Confidence            4446666666666666665554 45888888763    89999999999999985322 22345699999987754

>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A

Probab=98.75  E-value=3.9e-09  Score=93.70  Aligned_cols=69  Identities=13%  Similarity=0.092  Sum_probs=48.7

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceE-----EEEecc
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRY-----IEVTKA  413 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~-----IeV~~s  413 (612)
                      +|+|+||+++.++++|+++|.. +.+..|.|+.+      |||||+|++.++|++||+ +|+..|+|+.     |+|...
T Consensus        18 ~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~   91 (115)
T 3beg_B           18 RVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVD   91 (115)
T ss_dssp             CEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEEC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccC
Confidence            3345555554444444444443 34888888765      999999999999999997 8999999987     666554


Q ss_pred             Cc
Q psy16116        414 NG  415 (612)
Q Consensus       414 ~~  415 (612)
                      ..
T Consensus        92 ~~   93 (115)
T 3beg_B           92 GP   93 (115)
T ss_dssp             C-
T ss_pred             CC
Confidence            43

>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.75  E-value=2.6e-08  Score=85.17  Aligned_cols=73  Identities=15%  Similarity=0.231  Sum_probs=58.5

Q ss_pred             CCCcEeecCCCCCCCcccceecCCCHHHHHhhHhhcccccCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCc
Q psy16116        324 QTPTVYTIPTPGNPVALCPLVQNIWLSLLLNTIPGYEQVLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHH  402 (612)
Q Consensus       324 ~~~tvfV~~l~~~~~~l~vlV~nLp~~~~e~~fkeff~~~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~  402 (612)
                      ...+|||.++            +++.++++++|+.|+.   +.+|.|     ++++|||||+|.+.++|++||+ +++..
T Consensus        14 ~~~~l~V~n~------------~~t~~~l~~~F~~~G~---i~~v~i-----~~~~g~afV~f~~~~~a~~Ai~~l~g~~   73 (97)
T 1x5p_A           14 KGNTLYVYGE------------DMTPTLLRGAFSPFGN---IIDLSM-----DPPRNCAFVTYEKMESADQAVAELNGTQ   73 (97)
T ss_dssp             CCSEEEEECS------------SCCHHHHHHHHTTTSC---EEEEEE-----ETTTTEEEEEESSHHHHHHHHHHTTTEE
T ss_pred             CCCEEEEcCC------------CCCHHHHHHHHhhCCC---EEEEEe-----cCCCCEEEEEECCHHHHHHHHHHhCCCe
Confidence            4567887651            4566778888877764   777777     3688999999999999999995 79999


Q ss_pred             cCceEEEEeccCcc
Q psy16116        403 IDKRYIEVTKANGE  416 (612)
Q Consensus       403 IggR~IeV~~s~~~  416 (612)
                      ++|+.|.|..+...
T Consensus        74 ~~g~~l~v~~a~~~   87 (97)
T 1x5p_A           74 VESVQLKVNIARKQ   87 (97)
T ss_dssp             ETTEEEEEECCSSC
T ss_pred             ECCeEEEEEECCCC
Confidence            99999999877654

>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A

Probab=98.75  E-value=7.4e-09  Score=90.60  Aligned_cols=67  Identities=12%  Similarity=0.215  Sum_probs=49.0

Q ss_pred             ceecCCCHH-HHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCc
Q psy16116        342 PLVQNIWLS-LLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANG  415 (612)
Q Consensus       342 vlV~nLp~~-~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~  415 (612)
                      ++|+||+++ .++++|+++|.. +.+.+|.+       ++|||||+|.+.++|++|++ +++..|+|+.|.|..+..
T Consensus        30 l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i-------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~   99 (110)
T 1wf1_A           30 VFIGNLNTALVKKSDVETIFSKYGRVAGCSV-------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGE   99 (110)
T ss_dssp             EEECSCCCSSCCHHHHHHHHGGGSCCSEEEE-------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCC
T ss_pred             EEEeCCCcccCCHHHHHHHHHhCCCeEEEEE-------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence            334444444 444444444333 34777777       57999999999999999995 899999999999987754

>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}

Probab=98.74  E-value=5.3e-09  Score=89.43  Aligned_cols=68  Identities=7%  Similarity=0.010  Sum_probs=51.3

Q ss_pred             cceecCCCH-HHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCc
Q psy16116        341 CPLVQNIWL-SLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANG  415 (612)
Q Consensus       341 ~vlV~nLp~-~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~  415 (612)
                      +++|+|||+ +.++++|+++|.. +.+.+|.+.       +|||||+|.+.++|++|++ +++..++|+.|.|..+..
T Consensus        12 ~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~   82 (96)
T 2kvi_A           12 RLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSS   82 (96)
T ss_dssp             EEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE-------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEEC
T ss_pred             EEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCc
Confidence            445566665 5555555555443 347788873       7999999999999999998 799999999999977644

>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.74  E-value=7.9e-09  Score=87.85  Aligned_cols=72  Identities=11%  Similarity=0.059  Sum_probs=51.3

Q ss_pred             ceecCCCHHHHHhhHhhcccc-cCeeeEE-EeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCcc
Q psy16116        342 PLVQNIWLSLLLNTIPGYEQV-LGLGGVA-LCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGE  416 (612)
Q Consensus       342 vlV~nLp~~~~e~~fkeff~~-~~v~~V~-ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~  416 (612)
                      ++|+|||++.++++|+++|.. +.+.+|+ ++.++.   .|.|||+|.+.++|++|++ +|+..++||.|.|..+..+
T Consensus        18 l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~---~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~   92 (96)
T 2e44_A           18 LQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSE---TAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDE   92 (96)
T ss_dssp             EEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSS---SEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCC
T ss_pred             EEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCC---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCcc
Confidence            334555554444444444433 3478884 666543   3459999999999999997 8999999999999887654

>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.73  E-value=4.3e-08  Score=87.73  Aligned_cols=71  Identities=11%  Similarity=0.053  Sum_probs=53.4

Q ss_pred             cceecCCCHH-HHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-h--CCCccCceEEEEeccCc
Q psy16116        341 CPLVQNIWLS-LLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-R--HKHHIDKRYIEVTKANG  415 (612)
Q Consensus       341 ~vlV~nLp~~-~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~--ng~~IggR~IeV~~s~~  415 (612)
                      +++|+||+++ .++++|+++|.. +.+.+|+|+     +++|||||+|++.++|++|++ +  ++..|+||.|.|..+..
T Consensus        27 ~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~-----~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~  101 (112)
T 1x4f_A           27 VIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILM-----RMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEK  101 (112)
T ss_dssp             EEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEE-----TTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECS
T ss_pred             EEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEe-----cCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECcc
Confidence            4556666665 556666655554 458888886     468999999999999999997 4  35569999999987765


Q ss_pred             c
Q psy16116        416 E  416 (612)
Q Consensus       416 ~  416 (612)
                      .
T Consensus       102 ~  102 (112)
T 1x4f_A          102 Y  102 (112)
T ss_dssp             C
T ss_pred             c
Confidence            3

>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}

Probab=98.70  E-value=5.5e-09  Score=95.99  Aligned_cols=68  Identities=12%  Similarity=-0.007  Sum_probs=51.2

Q ss_pred             cCCCHHHHHhhHhhcccccCeeeEEEeeCCC-CCCcceEEEEeCC----HHH----HHHHHH---hCCCccCceEEEEec
Q psy16116        345 QNIWLSLLLNTIPGYEQVLGLGGVALCLSAF-GRRNGEAIVRFID----QEH----RDMALK---RHKHHIDKRYIEVTK  412 (612)
Q Consensus       345 ~nLp~~~~e~~fkeff~~~~v~~V~ii~d~~-GrsrG~AFVeF~S----~Ed----A~kAL~---~ng~~IggR~IeV~~  412 (612)
                      +.++...++++|+.||   .|.++.++.|++ |+++|||||+|.+    +++    |.+|+.   +++..|+||.|+|..
T Consensus        16 ~~tte~~Lk~~Fs~fG---eV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~I~Gr~irV~l   92 (136)
T 2j8a_A           16 TNIQDISIKNYFKKYG---EISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCFIMGFKFEVIL   92 (136)
T ss_dssp             CCCCHHHHHHHHHTTS---CCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEEETTEEEEEEE
T ss_pred             CCCCHHHHHHHHHhcC---CeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCeecCcEEEEEE
Confidence            3344566666666655   488999999985 8999999999996    433    788887   489999999999976


Q ss_pred             cCc
Q psy16116        413 ANG  415 (612)
Q Consensus       413 s~~  415 (612)
                      ...
T Consensus        93 n~~   95 (136)
T 2j8a_A           93 NKH   95 (136)
T ss_dssp             CCT
T ss_pred             Ccc
Confidence            543

>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.70  E-value=1.3e-08  Score=91.52  Aligned_cols=72  Identities=8%  Similarity=0.000  Sum_probs=48.0

Q ss_pred             cee--cCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCcc-----CceEEEEec
Q psy16116        342 PLV--QNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHI-----DKRYIEVTK  412 (612)
Q Consensus       342 vlV--~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~I-----ggR~IeV~~  412 (612)
                      ++|  +||+++.++++|+++|.. +.+.+|.|..     .+|||||+|++.++|++|++ +|+..+     +|+.+.|..
T Consensus        28 L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~-----~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~~  102 (114)
T 2cq2_A           28 LVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNF  102 (114)
T ss_dssp             EEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT-----TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEE
T ss_pred             EEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEEe
Confidence            445  445554444444444433 3477777752     37999999999999999997 788876     577777755


Q ss_pred             cCccch
Q psy16116        413 ANGEDF  418 (612)
Q Consensus       413 s~~~e~  418 (612)
                      +....|
T Consensus       103 a~~~p~  108 (114)
T 2cq2_A          103 VEKVQW  108 (114)
T ss_dssp             ESCCCC
T ss_pred             cccCcc
Confidence            544433

>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A

Probab=98.70  E-value=1.5e-08  Score=96.67  Aligned_cols=73  Identities=10%  Similarity=0.061  Sum_probs=54.5

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCc--eEEEEeccCcc
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDK--RYIEVTKANGE  416 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~Igg--R~IeV~~s~~~  416 (612)
                      +++|+||+++.++++|+++|.. +.+.+|+|..+   +++|||||+|++.++|++|++ +|+..|.|  +.|+|..+...
T Consensus        48 ~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k---~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~  124 (164)
T 1sjr_A           48 RIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK---NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT  124 (164)
T ss_dssp             EEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES---SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSS
T ss_pred             EEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC---CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCC
Confidence            4456666665555555555443 45888888643   367999999999999999997 89999954  99999877654

>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A

Probab=98.69  E-value=9.6e-09  Score=92.61  Aligned_cols=70  Identities=11%  Similarity=0.021  Sum_probs=55.6

Q ss_pred             HHHHhhHhhcc-cccCeeeEEEeeCCC-----CCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCccchh
Q psy16116        350 SLLLNTIPGYE-QVLGLGGVALCLSAF-----GRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGEDFI  419 (612)
Q Consensus       350 ~~~e~~fkeff-~~~~v~~V~ii~d~~-----GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~e~~  419 (612)
                      +++++++++.| ..+.+.+|+|.++..     |+++|+|||+|++.++|++|++ +||..++||.|.|.....+.|.
T Consensus        36 ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR~i~v~~~~~~~f~  112 (118)
T 3ue2_A           36 DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQERFD  112 (118)
T ss_dssp             TTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECHHHHH
T ss_pred             HHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcChHhcc
Confidence            34566666433 335699999998754     4678999999999999999996 8999999999999887765553

>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*

Probab=98.69  E-value=1.3e-08  Score=110.79  Aligned_cols=75  Identities=17%  Similarity=0.195  Sum_probs=59.6

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCc
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANG  415 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~  415 (612)
                      +|||+||++++++++|.++|.. +.|..|.|+.++ +|+++|||||+|.+.++|.+||+ +|+..|+|+.|.|..+..
T Consensus       104 ~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~~  181 (437)
T 3pgw_S          104 TLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERG  181 (437)
T ss_pred             EEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeCC
Confidence            4446666666555555555543 458899998885 68999999999999999999995 799999999999987754

>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.69  E-value=6.3e-09  Score=87.30  Aligned_cols=71  Identities=11%  Similarity=0.011  Sum_probs=50.3

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccCcc
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGE  416 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~~~  416 (612)
                      +++|+|||.+.++++|+++|.. +.+.+|+++.+    ++|||||+|.+.++|++|+.. ...++|+.|+|..+...
T Consensus         7 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l~v~~a~~~   78 (88)
T 1wf0_A            7 GVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP----FRAFAFVTFADDQIAQSLCGE-DLIIKGISVHISNAEPK   78 (88)
T ss_dssp             EEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS----CCSCCEEECSCHHHHHHTTTC-EEEETTEEEEEECCCCC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC----CCCEEEEEECCHHHHHHHhcC-CceeCCEEEEEEecCCC
Confidence            3445666665555555555544 44788888754    789999999999999876543 34568999999877653

>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A

Probab=98.62  E-value=3.3e-08  Score=90.78  Aligned_cols=73  Identities=12%  Similarity=0.085  Sum_probs=58.9

Q ss_pred             ccceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcce-EEEEeCCHHHHHHHHH-hCCCccCc--eEEEEeccC
Q psy16116        340 LCPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGE-AIVRFIDQEHRDMALK-RHKHHIDK--RYIEVTKAN  414 (612)
Q Consensus       340 l~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~-AFVeF~S~EdA~kAL~-~ng~~Igg--R~IeV~~s~  414 (612)
                      ++++|+||++..+++.|++.|.. +.+.+|++..+    ++|| |||+|.+.++|++|++ +||..|.|  +.|+|..+.
T Consensus        29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak  104 (130)
T 3zzy_A           29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK  104 (130)
T ss_dssp             EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECS
T ss_pred             EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecC
Confidence            46778888887777777776665 55888888653    4688 9999999999999997 89999977  889998776


Q ss_pred             cc
Q psy16116        415 GE  416 (612)
Q Consensus       415 ~~  416 (612)
                      ..
T Consensus       105 ~~  106 (130)
T 3zzy_A          105 LT  106 (130)
T ss_dssp             CS
T ss_pred             CC
Confidence            54

>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.61  E-value=1e-07  Score=84.07  Aligned_cols=63  Identities=17%  Similarity=0.180  Sum_probs=49.9

Q ss_pred             HHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCc
Q psy16116        350 SLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANG  415 (612)
Q Consensus       350 ~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~  415 (612)
                      ++++++|+++|.. +.+.+|.| .++  .++|||||+|.+.++|++|++ +|+..++||.|.|..+..
T Consensus        37 ~~~e~~l~~~f~~~G~v~~v~i-~~~--~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~v~~a~~  101 (112)
T 2dit_A           37 NEIREDLRVECSKFGQIRKLLL-FDR--HPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWDG  101 (112)
T ss_dssp             HHHHHHHHHHGGGTSCCSEEEE-ETT--CTTCEEEEECSCHHHHHHHHHHSTTCEETTEECEEEECCS
T ss_pred             HHHHHHHHHHHHccCCEeEEEE-ecC--CCCEEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCC
Confidence            4456667665554 55788865 443  489999999999999999996 899999999999987755

>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.60  E-value=5.6e-08  Score=88.49  Aligned_cols=72  Identities=15%  Similarity=0.074  Sum_probs=56.6

Q ss_pred             ccceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcce-EEEEeCCHHHHHHHHH-hCCCccCc--eEEEEeccC
Q psy16116        340 LCPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGE-AIVRFIDQEHRDMALK-RHKHHIDK--RYIEVTKAN  414 (612)
Q Consensus       340 l~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~-AFVeF~S~EdA~kAL~-~ng~~Igg--R~IeV~~s~  414 (612)
                      ++++|+||++..+++.|+++|.. +.+.+|+|...     +|| |||+|.+.++|++|++ +||..|.|  +.|+|..+.
T Consensus        26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak  100 (124)
T 2e5i_A           26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYAR  100 (124)
T ss_dssp             EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCS
T ss_pred             EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEec
Confidence            35667888887777777766655 55888888642     386 9999999999999997 89999977  689998776


Q ss_pred             cc
Q psy16116        415 GE  416 (612)
Q Consensus       415 ~~  416 (612)
                      ..
T Consensus       101 ~~  102 (124)
T 2e5i_A          101 PT  102 (124)
T ss_dssp             CS
T ss_pred             CC
Confidence            54

>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.60  E-value=1.3e-07  Score=85.91  Aligned_cols=82  Identities=11%  Similarity=0.126  Sum_probs=67.0

Q ss_pred             cccEEEEeCCCCC-CCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCC-HHHHHHHHH-h--CCccc
Q psy16116        437 AQVIIRMRGLPYE-CTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEK-EEEADKALS-K--HKESI  511 (612)
Q Consensus       437 ~~~~VfV~nLP~s-~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s-~edA~kAL~-~--~~~~i  511 (612)
                      .+..|+|+||+++ +++++|+++|+.||        .+..|.+..+..     +|||.|.+ +++|.+|++ +  ++..|
T Consensus        17 ~G~il~v~~l~~~~~sredLke~F~~~G--------~V~~Vd~~~g~~-----tgfVrf~~~~~~A~~av~~ln~~~~~i   83 (121)
T 1owx_A           17 IGCLLKFSGDLDDQTCREDLHILFSNHG--------EIKWIDFVRGAK-----EGIILFKEKAKEALGKAKDANNGNLQL   83 (121)
T ss_dssp             CCCEEEEEESCCSSCCHHHHHHHTCSSC--------CEEEEECCTTCS-----EEEEEESSCHHHHHHHHHHTTTSCBCT
T ss_pred             CCeEEEEecCCCCcCCHHHHHHHHHhcC--------CEEEEEEecCCC-----EEEEEECCChHHHHHHHHHhhcCCcEE
Confidence            5678999999999 99999999999999        456677765543     59999999 899999996 4  57889


Q ss_pred             CCEEEEEEecchHHHHHHhh
Q psy16116        512 GIRYIELFRSTTAEVQQVLN  531 (612)
Q Consensus       512 ggR~IeV~~as~~e~~~~~~  531 (612)
                      +|..+.+...+-++-+.+.+
T Consensus        84 ~g~~~~~evL~GeeE~~yw~  103 (121)
T 1owx_A           84 RNKEVTWEVLEGEVEKEALK  103 (121)
T ss_dssp             TSSSEEEEECCHHHHHHHHH
T ss_pred             eCcEEEEEECCCHHHHHHHH
Confidence            99989998887666555444

>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A

Probab=98.59  E-value=6.2e-08  Score=86.80  Aligned_cols=70  Identities=11%  Similarity=0.081  Sum_probs=56.6

Q ss_pred             CHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCccchhh
Q psy16116        348 WLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGEDFIN  420 (612)
Q Consensus       348 p~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~e~~~  420 (612)
                      .++++++++++.|.. |.+.+|+|.++   .++|+|||+|++.++|++|++ +||..++||.|.|..+....|..
T Consensus        26 ~~~el~edl~~~f~kfG~V~~v~i~~~---~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i~v~~~~~~~y~~   97 (114)
T 3s6e_A           26 WDTEIKDDVIEECNKHGGVIHIYVDKN---SAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVPLPTYHN   97 (114)
T ss_dssp             HHHHHHHHHHHHHTTTTCCSEEEECTT---CTTCCEEEECSSHHHHHHHHHHHTTCEETTEECEEEEECHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCCEEEEEEecC---CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEEcHHHHHH
Confidence            357777777754444 66888888654   258999999999999999996 89999999999998887766654

>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.45  E-value=3.5e-07  Score=80.05  Aligned_cols=63  Identities=16%  Similarity=0.334  Sum_probs=51.3

Q ss_pred             CCCHHHHHhhHhhcccccCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccCcc
Q psy16116        346 NIWLSLLLNTIPGYEQVLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGE  416 (612)
Q Consensus       346 nLp~~~~e~~fkeff~~~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~~~  416 (612)
                      +++.+++++.|+.|+.   +.+|+|+    ++++|||||+|++.++|++|++. ...+.+|.|.|..+...
T Consensus        28 ~~te~~L~~~F~~~G~---V~~v~i~----~~~rGfaFVeF~~~~~A~~Ai~~-~~~~~g~~l~V~~a~~~   90 (100)
T 2d9o_A           28 GYSKDVLLRLLQKYGE---VLNLVLS----SKKPGTAVVEFATVKAAELAVQN-EVGLVDNPLKISWLEGQ   90 (100)
T ss_dssp             SCCHHHHHHHHHTTSC---EEEEEEE----SSSSSEEEEEESCHHHHHHHHHT-CCBCSSSBCEEECSSCC
T ss_pred             CCCHHHHHHHHHhcCC---EEEEEEc----cCCCCEEEEEECCHHHHHHHHHh-cCCCCCCeEEEEEccCC
Confidence            5667888888888875   7888886    57899999999999999999986 44467888999776543

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}

Probab=98.44  E-value=3e-07  Score=89.97  Aligned_cols=70  Identities=14%  Similarity=0.059  Sum_probs=60.3

Q ss_pred             CCHHHHHHHHhcCCCCccccccCceeEEEeeCC-----CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEEEEEEecch
Q psy16116        450 CTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-----DGKATGDAFVLFEKEEEADKALS-KHKESIGIRYIELFRSTT  523 (612)
Q Consensus       450 ~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-----~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~IeV~~as~  523 (612)
                      -.++||++.|++||        .+.+|.|+.+.     +|+++|++||+|.+.++|.+|++ +||..++||.|.|..+..
T Consensus       141 e~~~dl~~e~~~~G--------~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~  212 (222)
T 3dxb_A          141 DLEGEVTEECGKFG--------AVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ  212 (222)
T ss_dssp             THHHHHHHHHTTTS--------CEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred             HHHHHHHHHHHccC--------CeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence            35789999999999        45678887553     45899999999999999999996 899999999999999887


Q ss_pred             HHHH
Q psy16116        524 AEVQ  527 (612)
Q Consensus       524 ~e~~  527 (612)
                      .++.
T Consensus       213 ~~f~  216 (222)
T 3dxb_A          213 ERFD  216 (222)
T ss_dssp             HHHH
T ss_pred             HHhh
Confidence            6654

>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.42  E-value=4.5e-07  Score=78.26  Aligned_cols=71  Identities=15%  Similarity=0.099  Sum_probs=57.2

Q ss_pred             ccEEEEeCCCC----CCCH----HHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCc
Q psy16116        438 QVIIRMRGLPY----ECTA----KQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALSKHKE  509 (612)
Q Consensus       438 ~~~VfV~nLP~----s~te----~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~~~~~  509 (612)
                      +.+|+|.-.+.    +.-+    .+|.+.|+.||    +|    ..|+|..|+       +||+|.+.++|.+||++|+.
T Consensus         7 d~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G----~V----i~vr~~~d~-------~fVtF~d~~sAlaAi~mnG~   71 (91)
T 2dnr_A            7 GGTVLVSIKSSLPENNFFDDALIDELLQQFASFG----EV----ILIRFVEDK-------MWVTFLEGSSALNVLSLNGK   71 (91)
T ss_dssp             SCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTC----CE----EEEEECSSS-------EEEEESSHHHHHHGGGGTTC
T ss_pred             CCeEEEEeccCccccccCCHHHHHHHHHHHHhCC----Ce----EEEEEecCC-------EEEEECChHHHHHHHhcCCe
Confidence            45677776662    2223    68999999999    34    558888654       89999999999999999999


Q ss_pred             ccCCEEEEEEecch
Q psy16116        510 SIGIRYIELFRSTT  523 (612)
Q Consensus       510 ~iggR~IeV~~as~  523 (612)
                      .++||.|+|..+++
T Consensus        72 ~v~Gr~LkV~lkt~   85 (91)
T 2dnr_A           72 ELLNRTITIALKSP   85 (91)
T ss_dssp             EETTEEEEEEECCC
T ss_pred             EeCCeEEEEEeCCC
Confidence            99999999998763

>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A

Probab=98.41  E-value=2.9e-07  Score=92.72  Aligned_cols=83  Identities=13%  Similarity=0.091  Sum_probs=57.7

Q ss_pred             CCCcEeecCCCCCCCcccceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCC
Q psy16116        324 QTPTVYTIPTPGNPVALCPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKH  401 (612)
Q Consensus       324 ~~~tvfV~~l~~~~~~l~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~  401 (612)
                      ...+|||++|+...+.     .+|....+++.|+++|.. +.|.+|+|+.     ++|||||+|.+.++|++|++ +++.
T Consensus       133 ~~rtLfVgnL~~~~~~-----~~~~~~~tEe~L~~~F~~fG~I~~v~v~~-----~kG~AFV~F~~~~~Ae~A~~am~g~  202 (240)
T 3u1l_A          133 KNKTLYVGGIDGALNS-----KHLKPAQIESRIRFVFSRLGDIDRIRYVE-----SKNCGFVKFKYQANAEFAKEAMSNQ  202 (240)
T ss_dssp             CCCEEEEECTTGGGTT-----CCCCHHHHHHHHHHHHHTTSCEEEEEEEG-----GGTEEEEEESSHHHHHHHHHHHTTC
T ss_pred             CCceeecCCCChhhhc-----ccccccCcHHHHHHHHHccCCEEEEEEEC-----CCCEEEEEeCCHHHHHHHHHHhCCC
Confidence            4566775554433211     122223366666655544 5588999874     58999999999999999996 8999


Q ss_pred             cc------------CceEEEEeccCcc
Q psy16116        402 HI------------DKRYIEVTKANGE  416 (612)
Q Consensus       402 ~I------------ggR~IeV~~s~~~  416 (612)
                      .|            +|+.|.|..+...
T Consensus       203 ~l~~~~~~e~~~~~~gr~L~V~wA~~~  229 (240)
T 3u1l_A          203 TLLLPSDKEWDDRREGTGLLVKWANED  229 (240)
T ss_dssp             CCCCTTSTTGGGGGGSCCCEEEECC--
T ss_pred             EEeccccccccccCCCCEEEEEEccCC
Confidence            88            8999999887653

>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.38  E-value=3.3e-07  Score=79.82  Aligned_cols=36  Identities=28%  Similarity=0.295  Sum_probs=33.4

Q ss_pred             ceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCc
Q psy16116        380 GEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANG  415 (612)
Q Consensus       380 G~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~  415 (612)
                      |+|||+|.+.++|++|++ +++..+.||.|+|..+..
T Consensus        47 G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~~   83 (96)
T 2diu_A           47 CSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTPK   83 (96)
T ss_dssp             TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSCC
T ss_pred             CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecCC
Confidence            999999999999999996 899999999999977654

>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.24  E-value=1.1e-06  Score=76.36  Aligned_cols=70  Identities=9%  Similarity=0.030  Sum_probs=58.1

Q ss_pred             cccEEEEeCCCCC------CC---HHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhC
Q psy16116        437 AQVIIRMRGLPYE------CT---AKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALSKH  507 (612)
Q Consensus       437 ~~~~VfV~nLP~s------~t---e~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~~~  507 (612)
                      .+.+|+|.-++.+      ..   -.+|.+.|+.||    +|    ..|+|..|+       +||+|.+.++|.+||++|
T Consensus        14 pD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G----~V----ilvr~v~d~-------~fVtF~d~~sAl~AI~ld   78 (95)
T 1ufw_A           14 LDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYG----TI----VLVRINQGQ-------MLVTFADSHSALSVLDVD   78 (95)
T ss_dssp             TTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHS----CC----SEEEEETTE-------EEEECSCSHHHHHHHHGG
T ss_pred             CCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCC----CE----EEEEEecCc-------EEEEEcChHHHHHHHhcC
Confidence            4578999988754      22   157999999999    34    458998765       999999999999999999


Q ss_pred             CcccCCEEEEEEec
Q psy16116        508 KESIGIRYIELFRS  521 (612)
Q Consensus       508 ~~~iggR~IeV~~a  521 (612)
                      +..++||.|+|..-
T Consensus        79 G~~v~Gr~L~V~~k   92 (95)
T 1ufw_A           79 GMKVKGRAVKISGP   92 (95)
T ss_dssp             GSEETTEEEEEECC
T ss_pred             CeeeCCeEEEEecc
Confidence            99999999999764

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}

Probab=98.07  E-value=3.4e-06  Score=82.42  Aligned_cols=67  Identities=10%  Similarity=0.059  Sum_probs=53.3

Q ss_pred             HHHHhhHhhcccccCeeeEEEeeCCC-----CCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCccchh
Q psy16116        350 SLLLNTIPGYEQVLGLGGVALCLSAF-----GRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGEDFI  419 (612)
Q Consensus       350 ~~~e~~fkeff~~~~v~~V~ii~d~~-----GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~e~~  419 (612)
                      +++.+.|..|+   .+.+|++.++..     |+++|++||+|.+.++|++|++ +||..++||.|.+.....++|.
T Consensus       144 ~dl~~e~~~~G---~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~~~f~  216 (222)
T 3dxb_A          144 GEVTEECGKFG---AVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQERFD  216 (222)
T ss_dssp             HHHHHHHTTTS---CEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCHHHHH
T ss_pred             HHHHHHHHccC---CeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCHHHhh
Confidence            34444444444   588999886644     3889999999999999999997 8999999999999887766554

>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*

Probab=97.94  E-value=1.2e-05  Score=85.07  Aligned_cols=50  Identities=10%  Similarity=0.101  Sum_probs=37.3

Q ss_pred             CCCHHHHHhhHhhcccccCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCcc
Q psy16116        346 NIWLSLLLNTIPGYEQVLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHI  403 (612)
Q Consensus       346 nLp~~~~e~~fkeff~~~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~I  403 (612)
                      +++.+++++.|++|+.   +.+|+|..     +||||||+|++.+||++|++ +||..+
T Consensus        31 ~~te~~L~~~F~~~G~---V~~v~~~~-----~kgfaFV~f~~~~~A~~Ai~~lnG~~~   81 (345)
T 3tht_A           31 GVSRNQLLPVLEKCGL---VDALLMPP-----NKPYSFARYRTTEESKRAYVTLNGKEV   81 (345)
T ss_dssp             TCCHHHHHHHHHTTSC---EEEEECCT-----TCSEEEEEESSHHHHHHHHHHTTTCEE
T ss_pred             CCCHHHHHHHHHhcCC---eEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCcc
Confidence            3455556666666553   77776632     57999999999999999997 788766

>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.93  E-value=1.5e-05  Score=69.11  Aligned_cols=53  Identities=17%  Similarity=0.242  Sum_probs=44.3

Q ss_pred             HHHhhHhhcccccCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEecc
Q psy16116        351 LLLNTIPGYEQVLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKA  413 (612)
Q Consensus       351 ~~e~~fkeff~~~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s  413 (612)
                      ++.+.|..|+.   +..|+++.++       +||+|.+.++|.+||++|+..++||.|+|..-
T Consensus        40 ~L~~~F~~~G~---Vilvr~v~d~-------~fVtF~d~~sAl~AI~ldG~~v~Gr~L~V~~k   92 (95)
T 1ufw_A           40 ELMQTLGSYGT---IVLVRINQGQ-------MLVTFADSHSALSVLDVDGMKVKGRAVKISGP   92 (95)
T ss_dssp             HHHHHHHHHSC---CSEEEEETTE-------EEEECSCSHHHHHHHHGGGSEETTEEEEEECC
T ss_pred             HHHHHHHHCCC---EEEEEEecCc-------EEEEEcChHHHHHHHhcCCeeeCCeEEEEecc
Confidence            35666666664   7788998764       99999999999999999999999999999643

>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.83  E-value=2.4e-05  Score=67.44  Aligned_cols=56  Identities=13%  Similarity=0.146  Sum_probs=46.2

Q ss_pred             HHHHhhHhhcccccCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccCc
Q psy16116        350 SLLLNTIPGYEQVLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANG  415 (612)
Q Consensus       350 ~~~e~~fkeff~~~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~~  415 (612)
                      .++.+.|..|+.   +..|+++.++       +||+|.+.++|.+||++|+..++||.|+|...+.
T Consensus        30 ~~L~~~F~~~G~---Vi~vr~~~d~-------~fVtF~d~~sAlaAi~mnG~~v~Gr~LkV~lkt~   85 (91)
T 2dnr_A           30 DELLQQFASFGE---VILIRFVEDK-------MWVTFLEGSSALNVLSLNGKELLNRTITIALKSP   85 (91)
T ss_dssp             HHHHHHHHTTCC---EEEEEECSSS-------EEEEESSHHHHHHGGGGTTCEETTEEEEEEECCC
T ss_pred             HHHHHHHHhCCC---eEEEEEecCC-------EEEEECChHHHHHHHhcCCeEeCCeEEEEEeCCC
Confidence            345666666653   7888887653       8999999999999999999999999999987764

>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}

Probab=97.48  E-value=0.0003  Score=62.61  Aligned_cols=78  Identities=17%  Similarity=0.249  Sum_probs=64.0

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcC-----CCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCcc
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAG-----TENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKAL-SKHKES  510 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~-----Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL-~~~~~~  510 (612)
                      ..++|-+-|||.++++..|+.|.+++     |    .    ...|.+..|..|     |+|+|.+...|-||. .++|..
T Consensus        20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g----~----i~KI~L~pDH~G-----Aivef~d~~~AgKasLaL~G~e   86 (117)
T 2l9w_A           20 LETLICLFPLSDKVSPSLICQFLQEEIHINEK----D----IRKILLVSDFNG-----AIIIFRDSKFAAKMLMILNGSQ   86 (117)
T ss_dssp             TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTT----T----CSEEEEETTTTE-----EEEECSCHHHHHHHHHHHSSEE
T ss_pred             CCcEEEEecCCCCCCHHHHHHHHhhhhccCcc----c----eeEEEEecCCCc-----eEEEEccchhhHHHHhhcCCee
Confidence            35779999999999999999999999     7    2    345777666544     999999999999988 689999


Q ss_pred             cCCEEEEEEecchHHHHHH
Q psy16116        511 IGIRYIELFRSTTAEVQQV  529 (612)
Q Consensus       511 iggR~IeV~~as~~e~~~~  529 (612)
                      |+||.|++.  +-.|+.+.
T Consensus        87 f~gr~Lr~g--Tv~eL~~~  103 (117)
T 2l9w_A           87 FQGKVIRSG--TINDMKRY  103 (117)
T ss_dssp             ETTEEEEEE--CHHHHHHH
T ss_pred             ecCeEEEec--CHHHHHhc
Confidence            999998875  45566554

>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.34  E-value=0.00018  Score=65.11  Aligned_cols=74  Identities=8%  Similarity=-0.050  Sum_probs=53.7

Q ss_pred             CCcccceecCCCHH-HHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCC-HHHHHHHHHh---CCCccCceEEEE
Q psy16116        337 PVALCPLVQNIWLS-LLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFID-QEHRDMALKR---HKHHIDKRYIEV  410 (612)
Q Consensus       337 ~~~l~vlV~nLp~~-~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S-~EdA~kAL~~---ng~~IggR~IeV  410 (612)
                      +..+.++|+||+.+ .++++|+++|.. +.|..|.+.++..     +|||+|.+ .++|.+|++.   ++..|+|..+.+
T Consensus        16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~-----tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~   90 (121)
T 1owx_A           16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK-----EGIILFKEKAKEALGKAKDANNGNLQLRNKEVTW   90 (121)
T ss_dssp             CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS-----EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEE
T ss_pred             cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC-----EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEE
Confidence            44556777888777 677777766654 4477777765433     69999999 8999999973   467888888887


Q ss_pred             eccCc
Q psy16116        411 TKANG  415 (612)
Q Consensus       411 ~~s~~  415 (612)
                      ...+.
T Consensus        91 evL~G   95 (121)
T 1owx_A           91 EVLEG   95 (121)
T ss_dssp             EECCH
T ss_pred             EECCC
Confidence            66654

>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.09  E-value=0.0015  Score=57.40  Aligned_cols=71  Identities=15%  Similarity=0.226  Sum_probs=57.4

Q ss_pred             ccEEEEeCCCCCCCHHHHHHHHhc---CCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCcccCCE
Q psy16116        438 QVIIRMRGLPYECTAKQVIDFFEA---GTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALSKHKESIGIR  514 (612)
Q Consensus       438 ~~~VfV~nLP~s~te~dLrefF~~---~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~~~~~~iggR  514 (612)
                      ..+|.|.|||.+++++.|.-||+.   -|-.      .+++|...  .     +-|+|+|.+.+.|++.|++..+.|++-
T Consensus         8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG------~V~~v~~~--~-----~~AvItF~d~~va~rVL~k~~H~L~~~   74 (104)
T 2dhx_A            8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGG------PVLSWQRL--G-----CGGVLTFREPADAERVLAQADHELHGA   74 (104)
T ss_dssp             CCEEEEESCCTTSCHHHHHHHHHCTTTTCCC------CEEEEEEE--T-----TEEEEEESSHHHHHHHHTCSCCBSSSS
T ss_pred             ccEEEEECCCCCCChhHheEEEeCCCcCCCc------eeeEEEEc--C-----CcEEEEEcChHHHHHHhcCCcceecCe
Confidence            467999999999999999999987   2310      23445542  2     569999999999999999889999999


Q ss_pred             EEEEEec
Q psy16116        515 YIELFRS  521 (612)
Q Consensus       515 ~IeV~~a  521 (612)
                      .|.|++.
T Consensus        75 ~LsV~P~   81 (104)
T 2dhx_A           75 QLSLRPA   81 (104)
T ss_dssp             BCEEEEC
T ss_pred             EEEEEcC
Confidence            9999873

>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.05  E-value=0.00071  Score=59.52  Aligned_cols=90  Identities=13%  Similarity=0.148  Sum_probs=65.2

Q ss_pred             CCCCcccceecCCCHHHHHhhHhhcccc------cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHHhCCCccCceEE
Q psy16116        335 GNPVALCPLVQNIWLSLLLNTIPGYEQV------LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYI  408 (612)
Q Consensus       335 ~~~~~l~vlV~nLp~~~~e~~fkeff~~------~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~I  408 (612)
                      +..++.+|.|.|||.+..++.++-||+.      +.+.+|...    +   +-|+|+|.+.+.|++.|++..+.|.+-.|
T Consensus         4 ~~~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~----~---~~AvItF~d~~va~rVL~k~~H~L~~~~L   76 (104)
T 2dhx_A            4 GSSGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRL----G---CGGVLTFREPADAERVLAQADHELHGAQL   76 (104)
T ss_dssp             SCCCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEE----T---TEEEEEESSHHHHHHHHTCSCCBSSSSBC
T ss_pred             CccCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEc----C---CcEEEEEcChHHHHHHhcCCcceecCeEE
Confidence            4456667778888877666677666653      335555552    2   67899999999999999988888999888


Q ss_pred             EEeccCccchhhccCCCCcchhhhccCCcccEEEEeCCCCCCC
Q psy16116        409 EVTKANGEDFINVAGGNNNEAQAFLTRGAQVIIRMRGLPYECT  451 (612)
Q Consensus       409 eV~~s~~~e~~~~~g~~~~e~~~~~~~~~~~~VfV~nLP~s~t  451 (612)
                      .|+.....                    ...+++++||+..++
T Consensus        77 sV~P~~~~--------------------~~~r~ll~gl~~~t~   99 (104)
T 2dhx_A           77 SLRPAPPR--------------------APARLLLQGLPPGTS   99 (104)
T ss_dssp             EEEECCCC--------------------CCCCCCCCSCCCCCC
T ss_pred             EEEcCCCC--------------------CcceEeeecCCCCCC
Confidence            88775432                    123488888888765

>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}

Probab=96.06  E-value=0.014  Score=53.46  Aligned_cols=89  Identities=15%  Similarity=0.163  Sum_probs=61.1

Q ss_pred             cEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEE------EeeCCCCC-----ceeEEEEEeCCHHHHHHHHHhC
Q psy16116        439 VIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVL------FVKKPDGK-----ATGDAFVLFEKEEEADKALSKH  507 (612)
Q Consensus       439 ~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~------i~~d~~Gr-----skG~AFV~F~s~edA~kAL~~~  507 (612)
                      ..|.|-|.|.+.+. .|.+.|+.||    +|++.....+      +......+     ...+-.|+|++..+|++||.+|
T Consensus         8 ~~VtVFGFp~~~~~-~VI~~Fs~~G----~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~N   82 (132)
T 3p3d_A            8 LAILVFGYPETMAN-QVIAYFQEFG----TILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLEN   82 (132)
T ss_dssp             CEEEEECCCGGGHH-HHHHHHGGGS----CBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTT
T ss_pred             eEEEEEecCHHHHH-HHHHHHHhhc----eEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhC
Confidence            45888899766554 5667889999    6653111000      00000001     2467799999999999999999


Q ss_pred             CcccCCEEEEEEecchHHHHHHhhh
Q psy16116        508 KESIGIRYIELFRSTTAEVQQVLNK  532 (612)
Q Consensus       508 ~~~iggR~IeV~~as~~e~~~~~~~  532 (612)
                      |..|+|.-|-|.+.++..+.+..++
T Consensus        83 G~ii~G~mIGV~Py~~~~ve~l~~~  107 (132)
T 3p3d_A           83 GAVFNGVLLGVIPYTKDAVERLQKR  107 (132)
T ss_dssp             TCEETTEECEEEECCHHHHHHHC--
T ss_pred             CeEeCcEEEEEEECCHHHHHHHhcC
Confidence            9999999999999998877765443

>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1

Probab=96.01  E-value=0.029  Score=50.54  Aligned_cols=77  Identities=18%  Similarity=0.224  Sum_probs=60.4

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCcccCC-EE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALSKHKESIGI-RY  515 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~~~~~~igg-R~  515 (612)
                      ....|.|-|.|.+. -..|.+.|+.||    +|++    ...  .   ....+-.|.|++..+|++||.+|+..++| -.
T Consensus        23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G----~Iv~----~~~--~---~~~NWihI~Y~s~~~A~rAL~kNG~ii~g~~m   88 (119)
T 1wwh_A           23 DDTWVTVFGFPQAS-ASYILLQFAQYG----NILK----HVM--S---NTGNWMHIRYQSKLQARKALSKDGRIFGESIM   88 (119)
T ss_dssp             GGGEEEEECCCGGG-HHHHHHHHHTTS----CEEE----EEE--C---SSSSEEEEEESSHHHHHHHHTTTTCEETTTEE
T ss_pred             CCCEEEEECCCHHH-HHHHHHHHHhhC----cEEE----ecc--C---CCCCeEEEEeCCHHHHHHHHHhCCeEecCCEE
Confidence            45679999999985 677888999999    5632    222  2   23468999999999999999999999985 66


Q ss_pred             EEEEecchHHHH
Q psy16116        516 IELFRSTTAEVQ  527 (612)
Q Consensus       516 IeV~~as~~e~~  527 (612)
                      |-|.++..+...
T Consensus        89 IGV~p~~d~~vi  100 (119)
T 1wwh_A           89 IGVKPCIDKNVM  100 (119)
T ss_dssp             CEEEECCCHHHH
T ss_pred             EEEEECCCHHHH
Confidence            899998655544

>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*

Probab=95.08  E-value=0.054  Score=47.18  Aligned_cols=54  Identities=19%  Similarity=0.382  Sum_probs=45.2

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHHh
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALSK  506 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~~  506 (612)
                      ..++++| ++|.+..-.||.++|+.||    .|     .|+.+.|      --|||.|.+++.|..||..
T Consensus        15 r~HVf~l-~FP~ewKt~DI~~lFs~fg----gv-----~I~WidD------TsAlvvf~~~~~a~~al~~   68 (100)
T 1whv_A           15 RDHVLHV-TFPKEWKTSDLYQLFSAFG----NI-----QISWIDD------TSAFVSLSQPEQVQIAVNT   68 (100)
T ss_dssp             CCSEEEE-ECCTTCCHHHHHHHHTTTC----SC-----CCEEEET------TEEEEECSCHHHHHHHHHH
T ss_pred             CCeEEEE-eCChhhhhHHHHHHhhccC----CE-----EEEEEcC------CeEEEEecCHHHHHHHHHh
Confidence            4577888 9999999999999999998    33     2677654      2599999999999999973

>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1

Probab=94.79  E-value=0.051  Score=48.94  Aligned_cols=74  Identities=9%  Similarity=-0.032  Sum_probs=53.4

Q ss_pred             CcccceecCCCHHHHHhhHhhcccccCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHHhCCCccCc-eEEEEeccCcc
Q psy16116        338 VALCPLVQNIWLSLLLNTIPGYEQVLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDK-RYIEVTKANGE  416 (612)
Q Consensus       338 ~~l~vlV~nLp~~~~e~~fkeff~~~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~~ng~~Igg-R~IeV~~s~~~  416 (612)
                      .+..|.|.+.+.+....-++.|...+.+.+...   .+|  ...-.|.|.++.+|++||.+|+..|++ -.|-|.++...
T Consensus        23 ~~~wVtVFGFp~~~~~~VL~~F~~~G~Iv~~~~---~~~--~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p~~d~   97 (119)
T 1wwh_A           23 DDTWVTVFGFPQASASYILLQFAQYGNILKHVM---SNT--GNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPCIDK   97 (119)
T ss_dssp             GGGEEEEECCCGGGHHHHHHHHHTTSCEEEEEE---CSS--SSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEECCCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhhCcEEEecc---CCC--CCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEECCCH
Confidence            355777888888876666665555445555554   222  348899999999999999999999986 44677776544

>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}

Probab=93.62  E-value=0.21  Score=44.50  Aligned_cols=61  Identities=15%  Similarity=0.138  Sum_probs=45.7

Q ss_pred             CCHHHHHhhHhhcccc--cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHH-HhCCCccCceEEEEec
Q psy16116        347 IWLSLLLNTIPGYEQV--LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMAL-KRHKHHIDKRYIEVTK  412 (612)
Q Consensus       347 Lp~~~~e~~fkeff~~--~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL-~~ng~~IggR~IeV~~  412 (612)
                      ++..-++.++..+-..  +.+..|.+.-|.     |=|+|+|++..+|-+|. .++|..|+||.|++-.
T Consensus        33 vndarIr~lve~~~~i~~g~i~KI~L~pDH-----~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gT   96 (117)
T 2l9w_A           33 VSPSLICQFLQEEIHINEKDIRKILLVSDF-----NGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGT   96 (117)
T ss_dssp             CCHHHHHHHHHHHTCCCTTTCSEEEEETTT-----TEEEEECSCHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred             CCHHHHHHHHhhhhccCccceeEEEEecCC-----CceEEEEccchhhHHHHhhcCCeeecCeEEEecC
Confidence            4446778888876221  346677776543     46999999999988887 7999999999998843

>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4

Probab=93.25  E-value=0.28  Score=42.06  Aligned_cols=64  Identities=14%  Similarity=0.137  Sum_probs=48.4

Q ss_pred             EEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-C-C-CceeEEEEEeCCHHHHHHHHH-hCCccc
Q psy16116        440 IIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-D-G-KATGDAFVLFEKEEEADKALS-KHKESI  511 (612)
Q Consensus       440 ~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~-G-rskG~AFV~F~s~edA~kAL~-~~~~~i  511 (612)
                      .|-||+||.+.||+++.+.++.+.        ..+...+...+ + + ..-.-|||.|.+.|++..-.+ .+|+.+
T Consensus         3 KvVIRrLPP~LteeeF~~~l~~~~--------~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F   70 (91)
T 1uw4_A            3 KVVIRRLPPTLTKEQLQEHLQPMP--------EHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVF   70 (91)
T ss_dssp             EEEEEEECTTCCHHHHHHHHCSCC--------CEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEE
T ss_pred             EEEEeCCCCCCCHHHHHHHhcCcc--------cceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEE
Confidence            599999999999999999999876        33455665443 1 2 234679999999999888875 476554

>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}

Probab=93.20  E-value=0.071  Score=46.53  Aligned_cols=53  Identities=19%  Similarity=0.390  Sum_probs=43.9

Q ss_pred             ccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHHh
Q psy16116        438 QVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALSK  506 (612)
Q Consensus       438 ~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~~  506 (612)
                      .++++| ++|.+..-.||.++|+.||    .|     .|+.+.|      .-|||.|.+++.|..||..
T Consensus         6 ~HV~~l-~FP~ewKt~Di~~lFs~fg----gv-----~I~WidD------TsAlvvf~~~~~a~~al~~   58 (101)
T 3ctr_A            6 DHVLHV-TFPKEWKTSDLYQLFSAFG----NI-----QISWIDD------TSAFVSLSQPEQVKIAVNT   58 (101)
T ss_dssp             EEEEEE-ECCTTCCHHHHHHHTTTSE----EE-----EEEEEET------TEEEEEEEEECHHHHHHHH
T ss_pred             CeEEEE-eCChhhhhHHHHHHHhccC----CE-----EEEEEcC------CeEEEEecCHHHHHHHHHh
Confidence            356777 9999999999999999998    33     3666654      2599999999999999973

>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1

Probab=90.65  E-value=0.44  Score=41.89  Aligned_cols=71  Identities=11%  Similarity=0.031  Sum_probs=53.9

Q ss_pred             cEEEEeCCCCCC-C----HHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccC
Q psy16116        439 VIIRMRGLPYEC-T----AKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIG  512 (612)
Q Consensus       439 ~~VfV~nLP~s~-t----e~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~ig  512 (612)
                      .+|+|.||+.++ .    .+.++++|..++    .+    ......     +|=+-..|.|.+.++|.+|-. +|+..++
T Consensus         6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~----~~----~tF~~l-----kSFRRirv~F~~~~~A~~AR~~Lh~~~f~   72 (104)
T 1wey_A            6 SGLIACVANDDVFSESETRAKFESLFRTYD----KD----TTFQYF-----KSFKRVRINFSNPLSAADARLRLHKTEFL   72 (104)
T ss_dssp             CEEEEECCCGGGGSTTTHHHHHHHHHHTTC----SS----CEEEEE-----TTTTEEEEECSSTTHHHHHHHTSTTSEET
T ss_pred             ceEEEecCCHHHcCCHHHHHHHHHHHHhhC----cC----cceeec-----CcceEEEEEeCChHHHHHHHHHhccceec
Confidence            569999998865 2    257789999998    22    223333     222357899999999999985 7999999


Q ss_pred             CEEEEEEecc
Q psy16116        513 IRYIELFRST  522 (612)
Q Consensus       513 gR~IeV~~as  522 (612)
                      |+.++|+-+.
T Consensus        73 g~~~r~YFgq   82 (104)
T 1wey_A           73 GKEMKLYFAQ   82 (104)
T ss_dssp             TEECEEECCC
T ss_pred             CceeEEEecC
Confidence            9999998764

>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}

Probab=90.48  E-value=0.16  Score=46.51  Aligned_cols=40  Identities=8%  Similarity=-0.019  Sum_probs=34.3

Q ss_pred             ceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccCccchh
Q psy16116        380 GEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGEDFI  419 (612)
Q Consensus       380 G~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~~~e~~  419 (612)
                      ..-.|+|.|..+|++||.+|++.|+|..|=|.+.++....
T Consensus        63 NWikItYds~~~A~rAL~~NG~ii~G~mIGV~Py~~~~ve  102 (132)
T 3p3d_A           63 SWTKITYDNPASAVDALLENGAVFNGVLLGVIPYTKDAVE  102 (132)
T ss_dssp             TEEEEEBSSHHHHHHHHTTTTCEETTEECEEEECCHHHHH
T ss_pred             cEEEEEcCCHHHHHHHHHhCCeEeCcEEEEEEECCHHHHH
Confidence            4679999999999999999999999988888887665443

>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}

Probab=84.53  E-value=0.66  Score=50.70  Aligned_cols=62  Identities=15%  Similarity=0.146  Sum_probs=41.9

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCccc
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALSKHKESI  511 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~~~~~~i  511 (612)
                      ..+.|+|. .|...++.+|.++|+.||        .+.++.+-. ..|   -||.|+|.+.+++..++...+.-.
T Consensus        52 a~rsv~v~-~~~~~~~~~l~~y~~~~g--------~i~~~~~~~-~~g---~~~~vef~~~~~~~~~~~~~~~p~  113 (464)
T 3pq1_A           52 AQRTVLIH-CPEKISENKFLKYLSQFG--------PINNHFFYE-SFG---LYAVVEFCQKESIGSLQNGTHTPX  113 (464)
T ss_dssp             HHTEEEEE-ECCC---CHHHHHHGGGS--------CCCCEEEEC-SSS---EEEEEECC---CCHHHHSSCCCCC
T ss_pred             hcceEEEE-cCCCCCHHHHHHHHHhcC--------CcceEEEEc-cCC---eEEEEEeCCHHHHHHHHhccCCCc
Confidence            45779998 699999999999999999        344566543 233   699999999999998886443333

>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}

Probab=80.91  E-value=1.3  Score=38.46  Aligned_cols=65  Identities=12%  Similarity=0.088  Sum_probs=41.7

Q ss_pred             cEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC--CCC-ceeEEEEEeCCHHHHHHHHHh-CCccc
Q psy16116        439 VIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP--DGK-ATGDAFVLFEKEEEADKALSK-HKESI  511 (612)
Q Consensus       439 ~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~--~Gr-skG~AFV~F~s~edA~kAL~~-~~~~i  511 (612)
                      ..|-||.||.+.||+++.+.++.+-        +.+.-.++..+  .+. .-..|||.|.+.|++..-.+. +|..+
T Consensus        10 ~KvVIRrLPP~Ltee~F~~~l~~~~--------~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F   78 (97)
T 2l08_A           10 HMVVIRRLPPGLTKEQLEEQLRPLP--------AHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIF   78 (97)
T ss_dssp             CCEEEECCCSCSCHHHHTTTTSCCS--------SEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEE
T ss_pred             eeEEEeCCCCCCCHHHHHHHhCCcC--------ccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEE
Confidence            4599999999999999776665432        11222222111  111 235699999999999888764 66543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	612
d1wg5a_	104	d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprot	9e-12
d1wg5a_	104	d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprot	2e-04
d1wg5a_	104	d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprot	0.002
d1weza_	102	d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprot	1e-11
d1weza_	102	d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprot	3e-04
d1wela1	112	d.58.7.1 (A:412-523) RNA-binding protein 12 {Human	6e-11
d1wela1	112	d.58.7.1 (A:412-523) RNA-binding protein 12 {Human	8e-05
d2cpya1	103	d.58.7.1 (A:536-638) RNA-binding protein 12 {Human	3e-09
d1uawa_	77	d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [Tax	8e-08
d1uawa_	77	d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [Tax	4e-04
d2cqpa1	86	d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mous	9e-08
d1u1qa_	183	d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1	2e-06
d1x0fa1	75	d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0	3e-06
d2cpha1	94	d.58.7.1 (A:454-547) Probable RNA-binding protein	5e-06
d2cqga1	90	d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TD	2e-05
d1hd0a_	75	d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprot	2e-05
d1x4ba1	103	d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucle	3e-05
d1l3ka1	84	d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RN	8e-05
d2cq4a1	101	d.58.7.1 (A:132-232) RNA binding protein 23 {Human	4e-04
d2msta_	75	d.58.7.1 (A:) Neural RNA-binding protein Musashi-1	0.001
d1cvja1	80	d.58.7.1 (A:11-90) Poly(A)-binding protein {Human	0.001
d1no8a_	78	d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus muscu	0.002

>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein H'
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.8 bits (144), Expect = 9e-12
 Identities = 36/89 (40%), Positives = 55/89 (61%), Gaps = 7/89 (7%)

Query: 440 IIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEE 499
            +R+RGLP+ C+ ++++ FF         +     G+       G++TG+AFV F  +E 
Sbjct: 17  FVRLRGLPFGCSKEEIVQFF-------SGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEI 69

Query: 500 ADKALSKHKESIGIRYIELFRSTTAEVQQ 528
           A+KAL KHKE IG RYIE+F+S+ AEV+ 
Sbjct: 70  AEKALKKHKERIGHRYIEIFKSSRAEVRT 98

>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein H'
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (89), Expect = 2e-04
 Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 1/51 (1%)

Query: 376 GRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGEDFINVAGGNN 426
           GR  GEA V+F  QE  + ALK+HK  I  RYIE+ K++  + +  +G ++
Sbjct: 54  GRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE-VRTSGPSS 103

>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein H'
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (82), Expect = 0.002
 Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 7/74 (9%)

Query: 63  EHILEFLGEFASNIVYQGVHMVYNSQGQPSGEAFIQMDSEHSAYLAAQLRHNRNMIFGKK 122
           E I++F       IV  G+ +  + QG+ +GEAF+Q  S+  A  A  L+ ++  I    
Sbjct: 30  EEIVQFFSGL--EIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKA--LKKHKERIGH-- 83

Query: 123 QRYIEVFQCSGEDM 136
            RYIE+F+ S  ++
Sbjct: 84  -RYIEIFKSSRAEV 96

>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein H'
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.4 bits (143), Expect = 1e-11
 Identities = 31/105 (29%), Positives = 48/105 (45%), Gaps = 9/105 (8%)

Query: 424 GNNNEAQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPD 483
           G++  + +         + MRGLPY  T   + +FF                V     PD
Sbjct: 1   GSSGSSGSSFQSTTGHCVHMRGLPYRATENDIYNFFSPL---------NPMRVHIEIGPD 51

Query: 484 GKATGDAFVLFEKEEEADKALSKHKESIGIRYIELFRSTTAEVQQ 528
           G+ TG+A V F   E+A  A++K K ++  RY+ELF ++TA    
Sbjct: 52  GRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNSTAGTSG 96

>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein H'
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (88), Expect = 3e-04
 Identities = 13/40 (32%), Positives = 20/40 (50%)

Query: 375 FGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKAN 414
            GR  GEA V F   E    A+ + K ++  RY+E+   +
Sbjct: 51  DGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNS 90

>d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]} Length = 112

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.6 bits (138), Expect = 6e-11
 Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 7/94 (7%)

Query: 440 IIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEE 499
            + ++GLP+E   K VIDFF+       ++            P+GKATG+ FV F  E +
Sbjct: 20  CVYLKGLPFEAENKHVIDFFKKLDIVEDSIY-------IAYGPNGKATGEGFVEFRNEAD 72

Query: 500 ADKALSKHKESIGIRYIELFRSTTAEVQQVLNKT 533
              AL +HK+ +G R+I++   T   + + ++  
Sbjct: 73  YKAALCRHKQYMGNRFIQVHPITKKGMLEKIDMI 106

>d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]} Length = 112

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (93), Expect = 8e-05
 Identities = 12/43 (27%), Positives = 21/43 (48%)

Query: 377 RRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGEDFI 419
           +  GE  V F ++     AL RHK ++  R+I+V     +  +
Sbjct: 58  KATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKKGML 100

>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.5 bits (125), Expect = 3e-09
 Identities = 19/93 (20%), Positives = 41/93 (44%), Gaps = 7/93 (7%)

Query: 437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEK 496
           A+V   +  +P+  T   V+ F          +   E  V  +   +G+  G A V F+ 
Sbjct: 7   AKVCAHITNIPFSITKMDVLQFL-------EGIPVDENAVHVLVDNNGQGLGQALVQFKN 59

Query: 497 EEEADKALSKHKESIGIRYIELFRSTTAEVQQV 529
           E++A K+   H++ +  R   +   T  +++++
Sbjct: 60  EDDARKSERLHRKKLNGREAFVHVVTLEDMREI 92

>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 77

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Musashi-1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.7 bits (113), Expect = 8e-08
 Identities = 13/74 (17%), Positives = 30/74 (40%), Gaps = 7/74 (9%)

Query: 444 RGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKA 503
            GL ++ T + + ++F    E    ++              ++ G  FV F  +   DK 
Sbjct: 6   GGLSWQTTQEGLREYFGQFGEVKECLV-------MRDPLTKRSRGFGFVTFMDQAGVDKV 58

Query: 504 LSKHKESIGIRYIE 517
           L++ +  +  + I+
Sbjct: 59  LAQSRHELDSKTID 72

>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 77

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Musashi-1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.9 bits (85), Expect = 4e-04
 Identities = 12/38 (31%), Positives = 18/38 (47%)

Query: 376 GRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKA 413
            R  G   V F+DQ   D  L + +H +D + I+   A
Sbjct: 39  KRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 76

>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus musculus) [TaxId: 10090]} Length = 86

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.7 bits (113), Expect = 9e-08
 Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 8/80 (10%)

Query: 440 IIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEE 499
           II+++ +P+  +  +++DFF                V       G  TG+A V FE  +E
Sbjct: 11  IIKVQNMPFTVSIDEILDFF-------YGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDE 63

Query: 500 ADKALSK-HKESIGIRYIEL 518
           A  A+   +   IG R ++L
Sbjct: 64  ATAAVIDLNDRPIGSRKVKL 83

>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (109), Expect = 2e-06
 Identities = 27/153 (17%), Positives = 54/153 (35%), Gaps = 17/153 (11%)

Query: 376 GRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGEDFINVAGGNNNEAQAFLTR 435
            R  G   V +   E  D A+    H +D R +E  +A   +     G +    +     
Sbjct: 45  KRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKK----- 99

Query: 436 GAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFE 495
                I + G+  +     + D+FE   +     +          +  GK  G AFV F+
Sbjct: 100 -----IFVGGIKEDTEEHHLRDYFEQYGKIEVIEI-------MTDRGSGKKRGFAFVTFD 147

Query: 496 KEEEADKALSKHKESIGIRYIELFRSTTAEVQQ 528
             +  DK + +   ++     E+ ++ + +   
Sbjct: 148 DHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMA 180

>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo sapiens) [TaxId: 9606]} Length = 75

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein D0 (AUF1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (101), Expect = 3e-06
 Identities = 14/74 (18%), Positives = 29/74 (39%), Gaps = 7/74 (9%)

Query: 444 RGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKA 503
            GL  +   +++ ++F    E     +        +     K  G  F+ F++EE   K 
Sbjct: 5   GGLSPDTPEEKIREYFGGFGEVESIEL-------PMDNKTNKRRGFCFITFKEEEPVKKI 57

Query: 504 LSKHKESIGIRYIE 517
           + K   ++G+   E
Sbjct: 58  MEKKYHNVGLSKCE 71

>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.0 bits (101), Expect = 5e-06
 Identities = 17/91 (18%), Positives = 35/91 (38%), Gaps = 10/91 (10%)

Query: 441 IRMRGLPYECTAKQVIDFFEA-GTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEE 499
           I +R +P++   +++ + F   G   +  +              G   G  FV F  +++
Sbjct: 11  ILVRNIPFQANQREIRELFSTFGELKTVRLP-------KKMTGTGAHRGFGFVDFITKQD 63

Query: 500 ADKALSK--HKESIGIRYIELFRSTTAEVQQ 528
           A KA +   H   +  R + L  + +    Q
Sbjct: 64  AKKAFNALCHSTHLYGRRLVLEWADSEVTVQ 94

>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: TAR DNA-binding protein 43, TDP-43
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (96), Expect = 2e-05
 Identities = 14/74 (18%), Positives = 28/74 (37%), Gaps = 8/74 (10%)

Query: 444 RGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKA 503
            GLP++ T + + ++F           +     +      G + G  FV F + E   K 
Sbjct: 14  LGLPWKTTEQDLKEYF-------STFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKV 66

Query: 504 LSKHKESIGIRYIE 517
           +   +  I  R+ +
Sbjct: 67  M-SQRHMIDGRWCD 79

>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0 {Human (Homo sapiens) [TaxId: 9606]} Length = 75

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein d0
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.4 bits (94), Expect = 2e-05
 Identities = 17/74 (22%), Positives = 34/74 (45%), Gaps = 7/74 (9%)

Query: 444 RGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKA 503
            GL ++ T K + D+F           +  +  L +    G++ G  FVLF++ E  DK 
Sbjct: 5   GGLSWDTTKKDLKDYFS-------KFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKV 57

Query: 504 LSKHKESIGIRYIE 517
           + + +  +  + I+
Sbjct: 58  MDQKEHKLNGKVID 71

>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins A2/B1 {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoproteins A2/B1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.8 bits (95), Expect = 3e-05
 Identities = 18/79 (22%), Positives = 33/79 (41%), Gaps = 7/79 (8%)

Query: 444 RGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKA 503
            GL +E T + + +++E   + +  V+              ++ G  FV F    E D A
Sbjct: 26  GGLSFETTEESLRNYYEQWGKLTDCVV-------MRDPASKRSRGFGFVTFSSMAEVDAA 78

Query: 504 LSKHKESIGIRYIELFRST 522
           ++    SI  R +E  R+ 
Sbjct: 79  MAARPHSIDGRVVEPKRAV 97

>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (91), Expect = 8e-05
 Identities = 16/74 (21%), Positives = 28/74 (37%), Gaps = 7/74 (9%)

Query: 444 RGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKA 503
            GL +E T + +   FE     +  V+              ++ G  FV +   EE D A
Sbjct: 12  GGLSFETTDESLRSHFEQWGTLTDCVV-------MRDPNTKRSRGFGFVTYATVEEVDAA 64

Query: 504 LSKHKESIGIRYIE 517
           ++     +  R +E
Sbjct: 65  MNARPHKVDGRVVE 78

>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA binding protein 23
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.7 bits (87), Expect = 4e-04
 Identities = 12/82 (14%), Positives = 27/82 (32%), Gaps = 7/82 (8%)

Query: 441 IRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEA 500
           +    L      + + DFF         V    +  +   +   ++ G A+V F + +  
Sbjct: 21  VFCMQLAARIRPRDLEDFFS-------AVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSV 73

Query: 501 DKALSKHKESIGIRYIELFRST 522
             A+    + +    I +  S 
Sbjct: 74  PLAIGLTGQRLLGVPIIVQASQ 95

>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 75

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Neural RNA-binding protein Musashi-1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.9 bits (82), Expect = 0.001
 Identities = 17/74 (22%), Positives = 27/74 (36%), Gaps = 7/74 (9%)

Query: 444 RGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKA 503
            GL    T + V  +F             ++ +L   K   +  G  FV FE E+  +K 
Sbjct: 5   GGLSVNTTVEDVKHYF-------EQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKV 57

Query: 504 LSKHKESIGIRYIE 517
              H   I  + +E
Sbjct: 58  CEIHFHEINNKMVE 71

>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (82), Expect = 0.001
 Identities = 13/67 (19%), Positives = 26/67 (38%), Gaps = 9/67 (13%)

Query: 441 IRMRGLPYECTAKQVIDFFEA-GTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEE 499
           + +  L  + T   + + F   G   S  V               ++ G A+V F++  +
Sbjct: 3   LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMI--------TRRSLGYAYVNFQQPAD 54

Query: 500 ADKALSK 506
           A++AL  
Sbjct: 55  AERALDT 61

>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 10090]} Length = 78

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear factor Aly
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.9 bits (80), Expect = 0.002
 Identities = 16/85 (18%), Positives = 34/85 (40%), Gaps = 11/85 (12%)

Query: 441 IRMRGLPYECTAKQVIDFFE-AGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEE 499
           + +  L +  +   + + F   GT     V              G++ G A V FE++ +
Sbjct: 3   LLVSNLDFGVSDADIQELFAEFGTLKKAAVH---------YDRSGRSLGTADVHFERKAD 53

Query: 500 ADKALSK-HKESIGIRYIELFRSTT 523
           A KA+ + +   +  R + +   T+
Sbjct: 54  ALKAMKQYNGVPLDGRPMNIQLVTS 78

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	612
d1u1qa_	183	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	99.94
d1u1qa_	183	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	99.79
d1wela1	112	RNA-binding protein 12 {Human (Homo sapiens) [TaxI	99.74
d1wg5a_	104	Heterogeneous nuclear ribonucleoprotein H' {Human	99.72
d2cpya1	103	RNA-binding protein 12 {Human (Homo sapiens) [TaxI	99.72
d1l3ka1	84	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	99.71
d1weza_	102	Heterogeneous nuclear ribonucleoprotein H' {Human	99.71
d1uawa_	77	Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}	99.71
d1l3ka2	79	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	99.7
d1hd0a_	75	Heterogeneous nuclear ribonucleoprotein d0 {Human	99.7
d2cqga1	90	TAR DNA-binding protein 43, TDP-43 {Human (Homo sa	99.69
d1x0fa1	75	Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo s	99.69
d1no8a_	78	Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 1	99.68
d2cq4a1	101	RNA binding protein 23 {Human (Homo sapiens) [TaxI	99.68
d1x4ba1	103	Heterogeneous nuclear ribonucleoproteins A2/B1 {Hu	99.67
d1b7fa1	82	Sex-lethal protein {Drosophila melanogaster [TaxId	99.67
d1cvja1	80	Poly(A)-binding protein {Human (Homo sapiens) [Tax	99.67
d1zh5a2	85	Lupus LA protein {Human (Homo sapiens) [TaxId: 960	99.67
d2cqpa1	86	RNA-binding protein 12 {Mouse (Mus musculus) [TaxI	99.66
d1fxla1	82	Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9	99.66
d2msta_	75	Neural RNA-binding protein Musashi-1 {Mouse (Mus m	99.66
d1rk8a_	88	RNA-binding protein 8 {Fruit fly (Drosophila melan	99.66
d2ghpa2	75	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	99.66
d2cqca1	83	Arginine/serine-rich splicing factor 10 {Human (Ho	99.66
d2cqba1	89	Peptidyl-prolyl cis-trans isomerase E, N-terminal	99.65
d1x5ua1	93	Splicing factor 3B subunit 4 {Human (Homo sapiens)	99.65
d1fjeb1	91	Nucleolin {Golden hamster (Mesocricetus auratus) [	99.65
d2ghpa1	81	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	99.65
d1whwa_	99	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	99.65
d2cqda1	103	RNA-binding region containing protein 1 {Human (Ho	99.65
d2ghpa3	86	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	99.64
d2u2fa_	85	Splicing factor U2AF 65 KDa subunit {Human (Homo s	99.63
d1h2vz_	93	CBP20, 20KDa nuclear cap-binding protein {Human (H	99.63
d1p1ta_	104	Cleavage stimulation factor, 64 kda subunit {Human	99.63
d2cq0a1	90	Eukaryotic translation initiation factor 3 subunit	99.63
d2cpza1	102	CUG triplet repeat RNA-binding protein 1 {Human (H	99.62
d1x5sa1	90	Cold-inducible RNA-binding protein {Human (Homo sa	99.62
d1x5ta1	83	Splicing factor 3B subunit 4 {Human (Homo sapiens)	99.61
d2cpfa1	85	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	99.61
d2cq3a1	93	RNA-binding protein 9 {Human (Homo sapiens) [TaxId	99.61
d2cpha1	94	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	99.61
d1u6fa1	139	RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId	99.61
d1b7fa2	85	Sex-lethal protein {Drosophila melanogaster [TaxId	99.61
d1wi8a_	104	Eukaryotic translation initiation factor 4B {Human	99.6
d1cvja2	89	Poly(A)-binding protein {Human (Homo sapiens) [Tax	99.59
d1fxla2	85	Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9	99.59
d2cqia1	90	Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960	99.58
d2cpea1	101	RNA-binding protein EWS {Human (Homo sapiens) [Tax	99.57
d2f9da1	114	Pre-mRNA branch site protein p14 {Human (Homo sapi	99.57
d1x4ha1	98	RNA-binding protein 28 {Mouse (Mus musculus) [TaxI	99.56
d1x5oa1	101	RNA-binding motif, single-stranded-interacting pro	99.55
d1x4ea1	72	RNA-binding motif, single-stranded-interacting pro	99.5
d2cpxa1	102	RNA-binding protein 41, RBM41 {Human (Homo sapiens	99.49
d1fjca_	96	Nucleolin {Golden hamster (Mesocricetus auratus) [	99.48
d1x4aa1	95	Splicing factor, arginine/serine-rich 1, SFRS1 {Hu	99.48
d1weza_	102	Heterogeneous nuclear ribonucleoprotein H' {Human	99.48
d2cpia1	89	E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musc	99.48
d1wg5a_	104	Heterogeneous nuclear ribonucleoprotein H' {Human	99.47
d1whxa_	111	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	99.47
d1wf0a_	88	TAR DNA-binding protein 43, TDP-43 {Human (Homo sa	99.47
d2cpda1	86	APOBEC1 stimulating protein {Human (Homo sapiens)	99.46
d2disa1	96	Hypothetical protein FLJ20273 {Human (Homo sapiens	99.46
d2adca2	88	Polypyrimidine tract-binding protein {Human (Homo	99.44
d1x4ga1	96	Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960	99.44
d1wg1a_	88	Probable RNA-binding protein KIAA1579 {Human (Homo	99.44
d1wi6a1	75	Ribonucleoprotein PTB-binding 1, Raver-1 {Mouse (M	99.44
d2cpja1	86	Non-POU domain-containing octamer-binding protein,	99.44
d2cqha1	80	IGF-II mRNA-binding protein 2 isoform A {Human (Ho	99.43
d2adca1	109	Polypyrimidine tract-binding protein {Human (Homo	99.42
d2b0ga1	83	Splicesomal U1A protein {Drosophila melanogaster [	99.41
d1uawa_	77	Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}	99.41
d3begb1	87	Splicing factor, arginine/serine-rich 1, SFRS1 {Hu	99.41
d1nu4a_	91	Splicesomal U1A protein {Human (Homo sapiens) [Tax	99.4
d1u2fa_	90	Splicing factor U2AF 65 KDa subunit {Human (Homo s	99.4
d1wf2a_	98	Heterogeneous nuclear ribonucleoproteins C1/C2 {Hu	99.4
d1hd0a_	75	Heterogeneous nuclear ribonucleoprotein d0 {Human	99.39
d2bz2a1	79	Negative elongation factor E, NELF-E {Human (Homo	99.39
d2adba1	108	Polypyrimidine tract-binding protein {Human (Homo	99.38
d2cq1a1	88	Polypyrimidine tract-binding protein 2, PTBP2 {Hum	99.37
d2cpya1	103	RNA-binding protein 12 {Human (Homo sapiens) [TaxI	99.37
d1l3ka1	84	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	99.37
d1wg4a_	98	Splicing factor, arginine/serine-rich 9 (SFRS9) {M	99.35
d1no8a_	78	Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 1	99.35
d1wela1	112	RNA-binding protein 12 {Human (Homo sapiens) [TaxI	99.34
d1x0fa1	75	Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo s	99.34
d2cq4a1	101	RNA binding protein 23 {Human (Homo sapiens) [TaxI	99.32
d1l3ka2	79	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	99.32
d2cqga1	90	TAR DNA-binding protein 43, TDP-43 {Human (Homo sa	99.3
d1zh5a2	85	Lupus LA protein {Human (Homo sapiens) [TaxId: 960	99.3
d2ghpa2	75	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	99.3
d1x5ua1	93	Splicing factor 3B subunit 4 {Human (Homo sapiens)	99.3
d2cqca1	83	Arginine/serine-rich splicing factor 10 {Human (Ho	99.3
d1whya_	97	Putative RNA-binding protein 15B, Rbm15b {Mouse (M	99.29
d1wexa_	104	Heterogeneous nuclear ribonucleoprotein L-like {Mo	99.29
d1whwa_	99	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	99.29
d1x4ba1	103	Heterogeneous nuclear ribonucleoproteins A2/B1 {Hu	99.29
d2msta_	75	Neural RNA-binding protein Musashi-1 {Mouse (Mus m	99.29
d1cvja1	80	Poly(A)-binding protein {Human (Homo sapiens) [Tax	99.29
d1x4fa1	99	Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}	99.28
d1b7fa1	82	Sex-lethal protein {Drosophila melanogaster [TaxId	99.27
d1fjeb1	91	Nucleolin {Golden hamster (Mesocricetus auratus) [	99.27
d2cqpa1	86	RNA-binding protein 12 {Mouse (Mus musculus) [TaxI	99.26
d1u6fa1	139	RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId	99.26
d1rk8a_	88	RNA-binding protein 8 {Fruit fly (Drosophila melan	99.25
d2cpha1	94	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	99.25
d2cqba1	89	Peptidyl-prolyl cis-trans isomerase E, N-terminal	99.25
d2cqda1	103	RNA-binding region containing protein 1 {Human (Ho	99.25
d2u2fa_	85	Splicing factor U2AF 65 KDa subunit {Human (Homo s	99.24
d2ghpa1	81	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	99.24
d2cq0a1	90	Eukaryotic translation initiation factor 3 subunit	99.24
d1wi8a_	104	Eukaryotic translation initiation factor 4B {Human	99.24
d2cpza1	102	CUG triplet repeat RNA-binding protein 1 {Human (H	99.24
U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}" target="_blank" href="http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?sid=d1jmta_">d1jmta_	104	U2	99.23
d1fxla1	82	Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9	99.23
d1wwha1	81	Nucleoporin 35 {Mouse (Mus musculus) [TaxId: 10090	99.23
d1x5sa1	90	Cold-inducible RNA-binding protein {Human (Homo sa	99.21
d1h2vz_	93	CBP20, 20KDa nuclear cap-binding protein {Human (H	99.21
d2ghpa3	86	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	99.21
d1x5ta1	83	Splicing factor 3B subunit 4 {Human (Homo sapiens)	99.19
d2cpfa1	85	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	99.19
d2cq3a1	93	RNA-binding protein 9 {Human (Homo sapiens) [TaxId	99.18
d1p1ta_	104	Cleavage stimulation factor, 64 kda subunit {Human	99.18
d1x4da1	89	Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}	99.18
d1cvja2	89	Poly(A)-binding protein {Human (Homo sapiens) [Tax	99.15
d2cqia1	90	Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960	99.15
d1b7fa2	85	Sex-lethal protein {Drosophila melanogaster [TaxId	99.14
d1fxla2	85	Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9	99.13
d2f9da1	114	Pre-mRNA branch site protein p14 {Human (Homo sapi	99.13
d1x5oa1	101	RNA-binding motif, single-stranded-interacting pro	99.12
d1x4aa1	95	Splicing factor, arginine/serine-rich 1, SFRS1 {Hu	99.08
d1x4ha1	98	RNA-binding protein 28 {Mouse (Mus musculus) [TaxI	99.07
d1weya_	104	Calcipressin-1 {Mouse (Mus musculus) [TaxId: 10090	99.07
d2cpea1	101	RNA-binding protein EWS {Human (Homo sapiens) [Tax	99.06
d1x4ea1	72	RNA-binding motif, single-stranded-interacting pro	99.06
d2disa1	96	Hypothetical protein FLJ20273 {Human (Homo sapiens	99.0
d1wi6a1	75	Ribonucleoprotein PTB-binding 1, Raver-1 {Mouse (M	98.99
d2cq2a1	101	Alkylation repair AlkB homolog 8, ALKBH8 {Human (H	98.99
d2cpia1	89	E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musc	98.99
d1wf0a_	88	TAR DNA-binding protein 43, TDP-43 {Human (Homo sa	98.98
d1owxa_	113	Lupus LA protein {Human (Homo sapiens) [TaxId: 960	98.97
d2cpxa1	102	RNA-binding protein 41, RBM41 {Human (Homo sapiens	98.97
d1x4ga1	96	Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960	98.96
d1wg1a_	88	Probable RNA-binding protein KIAA1579 {Human (Homo	98.96
d1fjca_	96	Nucleolin {Golden hamster (Mesocricetus auratus) [	98.95
d1o0pa_	104	Splicing factor U2AF 65 KDa subunit {Human (Homo s	98.93
d2dita1	99	HIV Tat-specific factor 1 {Human (Homo sapiens) [T	98.92
U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}" target="_blank" href="http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?sid=d1jmta_">d1jmta_	104	U2	98.92
d2adba1	108	Polypyrimidine tract-binding protein {Human (Homo	98.92
d1u2fa_	90	Splicing factor U2AF 65 KDa subunit {Human (Homo s	98.9
d2cpja1	86	Non-POU domain-containing octamer-binding protein,	98.9
d1nu4a_	91	Splicesomal U1A protein {Human (Homo sapiens) [Tax	98.9
d2adca2	88	Polypyrimidine tract-binding protein {Human (Homo	98.9
d1wwha1	81	Nucleoporin 35 {Mouse (Mus musculus) [TaxId: 10090	98.89
d1wf2a_	98	Heterogeneous nuclear ribonucleoproteins C1/C2 {Hu	98.89
d2adca1	109	Polypyrimidine tract-binding protein {Human (Homo	98.89
d2cpda1	86	APOBEC1 stimulating protein {Human (Homo sapiens)	98.88
d3begb1	87	Splicing factor, arginine/serine-rich 1, SFRS1 {Hu	98.87
d1whxa_	111	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	98.86
d2bz2a1	79	Negative elongation factor E, NELF-E {Human (Homo	98.86
d2cqha1	80	IGF-II mRNA-binding protein 2 isoform A {Human (Ho	98.85
d2b0ga1	83	Splicesomal U1A protein {Drosophila melanogaster [	98.84
d2cq1a1	88	Polypyrimidine tract-binding protein 2, PTBP2 {Hum	98.79
d1wg4a_	98	Splicing factor, arginine/serine-rich 9 (SFRS9) {M	98.72
d1o0pa_	104	Splicing factor U2AF 65 KDa subunit {Human (Homo s	98.65
d1wexa_	104	Heterogeneous nuclear ribonucleoprotein L-like {Mo	98.65
d1whya_	97	Putative RNA-binding protein 15B, Rbm15b {Mouse (M	98.63
d1x4fa1	99	Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}	98.6
d1weya_	104	Calcipressin-1 {Mouse (Mus musculus) [TaxId: 10090	98.57
d2dita1	99	HIV Tat-specific factor 1 {Human (Homo sapiens) [T	98.45
d1x4da1	89	Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}	98.42
d1owxa_	113	Lupus LA protein {Human (Homo sapiens) [TaxId: 960	98.18
d2cq2a1	101	Alkylation repair AlkB homolog 8, ALKBH8 {Human (H	98.16
d1ufwa_	95	Synaptojanin 2 {Human (Homo sapiens) [TaxId: 9606]	94.89
d2dgxa1	73	Limkain-b1, LKAP {Human (Homo sapiens) [TaxId: 960	94.34
d2dgxa1	73	Limkain-b1, LKAP {Human (Homo sapiens) [TaxId: 960	93.26
d1uw4a_	91	RNA processing protein UPF3x, RRM domain {Human (H	92.56
d1ufwa_	95	Synaptojanin 2 {Human (Homo sapiens) [TaxId: 9606]	90.83

>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=6.6e-26  Score=213.77  Aligned_cols=156  Identities=20%  Similarity=0.270  Sum_probs=126.9

Q ss_pred             HHHHhhHhhcccccCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccCccchhhccCCCCcc
Q psy16116        350 SLLLNTIPGYEQVLGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGEDFINVAGGNNNE  428 (612)
Q Consensus       350 ~~~e~~fkeff~~~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~~~e~~~~~g~~~~e  428 (612)
                      ++++++|+.|+   .+.++.++++. .|+++|||||+|.+.++|++|+..++..++++.+.+......+......     
T Consensus        21 ~~L~~~F~~~G---~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----   92 (183)
T d1u1qa_          21 ESLRSHFEQWG---TLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPG-----   92 (183)
T ss_dssp             HHHHHHHGGGS---CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEECCCTTGGGSTT-----
T ss_pred             HHHHHHHHHcC---CEEEEEeeecccCCCccCceecccCCHHHHHHHHHhcCCcccccchhhhhhhhcccccccc-----
Confidence            55555555554   47888888876 5889999999999999999999999889999988886654432211111     


Q ss_pred             hhhhccCCcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHHhC
Q psy16116        429 AQAFLTRGAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALSKH  507 (612)
Q Consensus       429 ~~~~~~~~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~~~  507 (612)
                           ......+|||+|||+++|+++|+++|+.||        .+..+.|+.|. +|+++|||||+|.+.++|++||+++
T Consensus        93 -----~~~~~~~i~V~~lp~~~te~~L~~~f~~~G--------~v~~~~i~~~~~~~~~~g~~fV~f~~~e~A~~Al~~~  159 (183)
T d1u1qa_          93 -----AHLTVKKIFVGGIKEDTEEHHLRDYFEQYG--------KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQK  159 (183)
T ss_dssp             -----TTCCCSEEEEECCCTTCCHHHHHHHHGGGS--------CEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHTSS
T ss_pred             -----cccccceeEEccCCCcCCHHHHhhhhccCC--------ceeeeeeecccccCccceeEEEEECCHHHHHHHHHhC
Confidence                 112346799999999999999999999999        45679999886 6899999999999999999999999


Q ss_pred             CcccCCEEEEEEecc-hHHH
Q psy16116        508 KESIGIRYIELFRST-TAEV  526 (612)
Q Consensus       508 ~~~iggR~IeV~~as-~~e~  526 (612)
                      ++.++||.|+|..+. ++++
T Consensus       160 ~~~~~G~~i~V~~A~~k~e~  179 (183)
T d1u1qa_         160 YHTVNGHNCEVRKALSKQEM  179 (183)
T ss_dssp             CEEETTEEEEEEECCCHHHH
T ss_pred             CCeECCEEEEEEecCCcccc
Confidence            999999999999984 4444

>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=2.3e-19  Score=168.49  Aligned_cols=123  Identities=18%  Similarity=0.213  Sum_probs=101.8

Q ss_pred             cEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHHhCCcccCCEEEE
Q psy16116        439 VIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALSKHKESIGIRYIE  517 (612)
Q Consensus       439 ~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~~~~~~iggR~Ie  517 (612)
                      ++|||+|||+++|+++|+++|+.||        .+.++.++.+. +|+++|||||+|.+.++|++|++.++..++++.+.
T Consensus         7 r~lfV~nLp~~~te~~L~~~F~~~G--------~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~   78 (183)
T d1u1qa_           7 RKLFIGGLSFETTDESLRSHFEQWG--------TLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVE   78 (183)
T ss_dssp             HEEEEESCCTTCCHHHHHHHHGGGS--------CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECE
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHcC--------CEEEEEeeecccCCCccCceecccCCHHHHHHHHHhcCCcccccchh
Confidence            6799999999999999999999999        45678998886 79999999999999999999999999999999988


Q ss_pred             EEecchHHHHHHhhhhcCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCcccccCCCcccEEEEcCCCccCCHHHHHH
Q psy16116        518 LFRSTTAEVQQVLNKTMELPKNNSLTSSNNGLSAQQPMLSHLAQVPVPYLPQHIITSGTRKDCIRLRGLPYEALCILMDI  597 (612)
Q Consensus       518 V~~as~~e~~~~~~~~~~~~~~~~~~~e~~~~s~~~~~~~~~s~~p~~~~~~~~~~~~~~~~~VfVrNLPf~vTeeDLke  597 (612)
                      +......+..      .        ..                            ......++|||+|||+++|+++|++
T Consensus        79 ~~~~~~~~~~------~--------~~----------------------------~~~~~~~~i~V~~lp~~~te~~L~~  116 (183)
T d1u1qa_          79 PKRAVSREDS------Q--------RP----------------------------GAHLTVKKIFVGGIKEDTEEHHLRD  116 (183)
T ss_dssp             EEECCCTTGG------G--------ST----------------------------TTTCCCSEEEEECCCTTCCHHHHHH
T ss_pred             hhhhhhcccc------c--------cc----------------------------ccccccceeEEccCCCcCCHHHHhh
Confidence            8764322100      0        00                            0012446899999999999999999


Q ss_pred             hhccCCcEeEeeCC
Q psy16116        598 FFVGQQDSFVHKVP  611 (612)
Q Consensus       598 fFs~~gdI~~~kip  611 (612)
                      +|+.||+|..+.|.
T Consensus       117 ~f~~~G~v~~~~i~  130 (183)
T d1u1qa_         117 YFEQYGKIEVIEIM  130 (183)
T ss_dssp             HHGGGSCEEEEEEE
T ss_pred             hhccCCceeeeeee
Confidence            99999998887653

>d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=1.6e-18  Score=152.72  Aligned_cols=90  Identities=34%  Similarity=0.619  Sum_probs=79.9

Q ss_pred             CcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCcccCCEE
Q psy16116        436 GAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALSKHKESIGIRY  515 (612)
Q Consensus       436 ~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~~~~~~iggR~  515 (612)
                      ...++|||+||||++|++||++||+.+|+    |   ...+.+..+.+|+++|||||+|.+.++|++||++|+..|+||+
T Consensus        16 ~~~~~i~v~nLp~~~t~~di~~~F~~~g~----~---~~~~~~~~~~~g~~~G~afVeF~~~e~a~~al~~~~~~i~gR~   88 (112)
T d1wela1          16 EAGFCVYLKGLPFEAENKHVIDFFKKLDI----V---EDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRF   88 (112)
T ss_dssp             CCCCEEEEECCCTTCCHHHHHHHSCSSCB----C---TTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSC
T ss_pred             CCCeEEEEecCCCcCcHHHHhhHHhhccc----c---ccceeeecCcccceeeEEEEEECCHHHHHHHHHcCCCcCCCEE
Confidence            35679999999999999999999999993    2   2346667778999999999999999999999999999999999


Q ss_pred             EEEEecchHHHHHHhhh
Q psy16116        516 IELFRSTTAEVQQVLNK  532 (612)
Q Consensus       516 IeV~~as~~e~~~~~~~  532 (612)
                      |+|..++++++.+.+.+
T Consensus        89 i~V~~~~~~~~~~~~~~  105 (112)
T d1wela1          89 IQVHPITKKGMLEKIDM  105 (112)
T ss_dssp             BEEEEECHHHHHHHHHH
T ss_pred             EEEEEcChHHHHHHHHH
Confidence            99999999998776654

>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein H'
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=1e-18  Score=151.73  Aligned_cols=83  Identities=45%  Similarity=0.805  Sum_probs=73.4

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCcccCCEEE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALSKHKESIGIRYI  516 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~~~~~~iggR~I  516 (612)
                      ...+|||+||||++||+||++||+.+|+    |   ...|.+..+.+|+++|||||+|.++++|++||++|++.|+||+|
T Consensus        14 ~~~~v~v~nLP~~~te~dI~~~F~~~g~----v---~~~v~~~~~~~~~~kG~afV~F~~~e~a~~a~~~~~~~i~gR~i   86 (104)
T d1wg5a_          14 NDGFVRLRGLPFGCSKEEIVQFFSGLEI----V---PNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYI   86 (104)
T ss_dssp             CCCEEEEESCCTTCCHHHHHHHTTTCCE----E---EEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCC
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHhcCC----c---eEEEEEEeCCCCCcceEEEEEeCCHHHHHHHHhhCCCEEcceEE
Confidence            4568999999999999999999999992    2   23466666779999999999999999999999999999999999


Q ss_pred             EEEecchHHH
Q psy16116        517 ELFRSTTAEV  526 (612)
Q Consensus       517 eV~~as~~e~  526 (612)
                      +|..++++++
T Consensus        87 ~V~~~~~~~~   96 (104)
T d1wg5a_          87 EIFKSSRAEV   96 (104)
T ss_dssp             EEEEECTTTS
T ss_pred             EEEECCHHHh
Confidence            9999987654

>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=8e-18  Score=145.54  Aligned_cols=87  Identities=23%  Similarity=0.378  Sum_probs=77.4

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCcccCCEEE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALSKHKESIGIRYI  516 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~~~~~~iggR~I  516 (612)
                      ...||||+||||++|++||++||+.+|+    |   ...+.+..+.+|+++|||||+|.+.++|++||++|+..|+||.|
T Consensus         7 ~~~~v~v~nLp~~~t~~~l~~~F~~~g~----i---~~~~~~~~~~~g~~~G~afV~F~s~~~a~~Al~~n~~~i~gr~i   79 (103)
T d2cpya1           7 AKVCAHITNIPFSITKMDVLQFLEGIPV----D---ENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGREA   79 (103)
T ss_dssp             CCCEEEEESCCTTSCHHHHHHHTTTSCC----C---STTEEECCCTTSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEE
T ss_pred             CceEEEEeCCCCCCCHHHHhhhhcccce----E---EEEEEEEeCCCCCcCccEEEEECCHHHHHHHHhcCCCeECCcEE
Confidence            3468999999999999999999999993    2   23577878889999999999999999999999999999999999


Q ss_pred             EEEecchHHHHHHh
Q psy16116        517 ELFRSTTAEVQQVL  530 (612)
Q Consensus       517 eV~~as~~e~~~~~  530 (612)
                      .|..++.+++....
T Consensus        80 ~V~~~~~~~~~~~~   93 (103)
T d2cpya1          80 FVHVVTLEDMREIE   93 (103)
T ss_dssp             EEEEECHHHHHHHH
T ss_pred             EEEECCHHHhhhhc
Confidence            99999988876543

>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=1.7e-17  Score=138.89  Aligned_cols=76  Identities=22%  Similarity=0.344  Sum_probs=70.9

Q ss_pred             ccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHHhCCcccCCEEE
Q psy16116        438 QVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALSKHKESIGIRYI  516 (612)
Q Consensus       438 ~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~~~~~~iggR~I  516 (612)
                      .++|||+|||++++++||+++|+.||        .+..++|++|+ +|+++|||||+|.+.++|++||+++++.|+||.|
T Consensus         6 ~~~lfV~nlp~~~te~~l~~~F~~~G--------~i~~v~i~~d~~tg~~kG~afV~f~~~~~a~~ai~~~~~~i~Gr~i   77 (84)
T d1l3ka1           6 LRKLFIGGLSFETTDESLRSHFEQWG--------TLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVV   77 (84)
T ss_dssp             GGEEEEESCCTTCCHHHHHHHHGGGS--------CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEEC
T ss_pred             CcEEEEECCCCCCCHHHHHHHHHhhc--------cccceeecccccCCCcccEEEEEEcCHHHHHHHHHhCCCEECCEEE
Confidence            36799999999999999999999999        45779999987 6999999999999999999999999999999999


Q ss_pred             EEEec
Q psy16116        517 ELFRS  521 (612)
Q Consensus       517 eV~~a  521 (612)
                      +|..+
T Consensus        78 ~V~~A   82 (84)
T d1l3ka1          78 EPKRA   82 (84)
T ss_dssp             EEEEC
T ss_pred             EEEee
Confidence            99876

>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein H'
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=4.2e-18  Score=147.48  Aligned_cols=79  Identities=37%  Similarity=0.589  Sum_probs=72.3

Q ss_pred             CcccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCcccCCEE
Q psy16116        436 GAQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALSKHKESIGIRY  515 (612)
Q Consensus       436 ~~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~~~~~~iggR~  515 (612)
                      ...++|||+||||++||+||++||+.+|+         ..|+++++.+|+++|||||+|.++++|++||++|+..|+||.
T Consensus        13 ~~~~~v~v~nLp~~~te~dl~~~F~~~~~---------~~v~~~~~~~g~~~G~afVeF~~~~~a~~Al~~~~~~i~gR~   83 (102)
T d1weza_          13 TTGHCVHMRGLPYRATENDIYNFFSPLNP---------MRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRY   83 (102)
T ss_dssp             SSSCEEEEESCCTTCCHHHHHHSSCSCCC---------SEEEEEESSSSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSC
T ss_pred             CCCCEEEEeCCCCcCCHHHHHHHHhccCc---------ceeeeEEecCCcceEEEEEEECCHHHHHHHHHcCCCEECCEE
Confidence            35679999999999999999999999882         258888999999999999999999999999999999999999


Q ss_pred             EEEEecch
Q psy16116        516 IELFRSTT  523 (612)
Q Consensus       516 IeV~~as~  523 (612)
                      |+|..++.
T Consensus        84 I~V~~s~~   91 (102)
T d1weza_          84 VELFLNST   91 (102)
T ss_dssp             CEEEEECC
T ss_pred             EEEEEcCC
Confidence            99998764

>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Musashi-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.71  E-value=3.2e-18  Score=141.31  Aligned_cols=74  Identities=19%  Similarity=0.358  Sum_probs=69.1

Q ss_pred             EEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHHhCCcccCCEEEEE
Q psy16116        440 IIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALSKHKESIGIRYIEL  518 (612)
Q Consensus       440 ~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~~~~~~iggR~IeV  518 (612)
                      +|||+|||+++|+++|+++|+.+|        .+.+++|++|+ +|++||||||+|.++++|++||+++++.|+||.|+|
T Consensus         2 klfV~nLp~~~te~~l~~~F~~~G--------~i~~v~i~~d~~tg~~kG~aFV~f~~~~~a~~al~~~~~~i~Gr~i~V   73 (77)
T d1uawa_           2 KMFIGGLSWQTTQEGLREYFGQFG--------EVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDP   73 (77)
T ss_dssp             CEEEESCCSSCCSHHHHHHHTTTS--------CCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEE
T ss_pred             EEEEeCCCCcCCHHHHHHHHHHhC--------CcceeeeecccCCCCccceEEEEECCHHHHHHHHHcCCCEECCeEEEE
Confidence            599999999999999999999999        44679999987 699999999999999999999999999999999999


Q ss_pred             Eec
Q psy16116        519 FRS  521 (612)
Q Consensus       519 ~~a  521 (612)
                      ..+
T Consensus        74 ~~A   76 (77)
T d1uawa_          74 KVA   76 (77)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            875

>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=2.7e-17  Score=135.27  Aligned_cols=75  Identities=21%  Similarity=0.313  Sum_probs=69.5

Q ss_pred             cEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHHhCCcccCCEEEE
Q psy16116        439 VIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALSKHKESIGIRYIE  517 (612)
Q Consensus       439 ~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~~~~~~iggR~Ie  517 (612)
                      ++|||+|||+++|++||+++|++||        .+..+.++.++ +|+++|||||+|.++|++++|++++++.|+||.|+
T Consensus         3 r~lfV~nLp~~~te~~l~~~F~~~G--------~i~~~~~~~~~~~~~~~g~afV~f~~~e~~~~al~~~~~~l~Gr~i~   74 (79)
T d1l3ka2           3 KKIFVGGIKEDTEEHHLRDYFEQYG--------KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCE   74 (79)
T ss_dssp             SEEEEECCTTTCCHHHHHHHHTTTS--------CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHCSCCEETTEECE
T ss_pred             CEEEECCCCCcCCHHHHHHHHHHhc--------cccccccccCCCCcccccEEEEEEcCHHHHHHHHHhCCCEECCEEEE
Confidence            4699999999999999999999999        45678888876 78999999999999999999999999999999999


Q ss_pred             EEec
Q psy16116        518 LFRS  521 (612)
Q Consensus       518 V~~a  521 (612)
                      |..+
T Consensus        75 V~~A   78 (79)
T d1l3ka2          75 VRKA   78 (79)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            9875

>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein d0
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=9.2e-18  Score=137.53  Aligned_cols=73  Identities=25%  Similarity=0.448  Sum_probs=68.1

Q ss_pred             EEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHHhCCcccCCEEEEEE
Q psy16116        441 IRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALSKHKESIGIRYIELF  519 (612)
Q Consensus       441 VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~~~~~~iggR~IeV~  519 (612)
                      |||+|||++++|++|+++|+.||        .+..++|+.|+ +|+++|||||+|.+.++|++||+++++.|+||.|+|.
T Consensus         2 lfV~nl~~~~te~~l~~~F~~~G--------~i~~~~i~~d~~t~~~kg~afV~f~~~~~a~~Al~~~~~~l~Gr~i~V~   73 (75)
T d1hd0a_           2 MFIGGLSWDTTKKDLKDYFSKFG--------EVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPK   73 (75)
T ss_dssp             EEEECCCTTCCHHHHHHHHHTTS--------CEEEEECCCBTTTTBCCSEEEEEESSHHHHHHHHHTCCCCBTTBCCEEC
T ss_pred             EEEeCCCCcCCHHHHHHHHHhhc--------cccccccccCCCCCCcCceEEEEECCHHHHHHHHhcCCCEECCCEEEee
Confidence            89999999999999999999999        45779999887 6999999999999999999999999999999999996


Q ss_pred             ec
Q psy16116        520 RS  521 (612)
Q Consensus       520 ~a  521 (612)
                      ++
T Consensus        74 rA   75 (75)
T d1hd0a_          74 RA   75 (75)
T ss_dssp             CC
T ss_pred             EC
Confidence            53

>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: TAR DNA-binding protein 43, TDP-43
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=2.6e-17  Score=139.82  Aligned_cols=77  Identities=22%  Similarity=0.288  Sum_probs=69.6

Q ss_pred             ccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHHhCCcccCCEEE
Q psy16116        438 QVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALSKHKESIGIRYI  516 (612)
Q Consensus       438 ~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~~~~~~iggR~I  516 (612)
                      ..+|||+|||+++|+++|+++|+.||        .+..|+|++|+ +|+++|||||+|.+.++|++||+ +++.|+||.|
T Consensus         8 ~~~lfV~nLp~~~te~~l~~~F~~~G--------~i~~v~i~~d~~tg~srG~aFV~f~~~~~a~~al~-~~~~l~Gr~i   78 (90)
T d2cqga1           8 TSDLIVLGLPWKTTEQDLKEYFSTFG--------EVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS-QRHMIDGRWC   78 (90)
T ss_dssp             CCCEEEESCCSSCCHHHHHHHHGGGS--------CEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH-SCEEETTEEE
T ss_pred             CCeEEEECCCCCCCHHHHHHHHHhhc--------ccceeeeccCCCCcccCCEEEEEECCHHHHHHHHh-cCCccCCEEe
Confidence            35699999999999999999999999        45779999987 69999999999999999999997 4568999999


Q ss_pred             EEEecch
Q psy16116        517 ELFRSTT  523 (612)
Q Consensus       517 eV~~as~  523 (612)
                      .|..+..
T Consensus        79 ~v~~a~~   85 (90)
T d2cqga1          79 DCKLPNS   85 (90)
T ss_dssp             EEECCCT
T ss_pred             EEEeCCC
Confidence            9988754

>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein D0 (AUF1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=7e-18  Score=138.71  Aligned_cols=74  Identities=20%  Similarity=0.324  Sum_probs=68.5

Q ss_pred             EEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHHhCCcccCCEEEEE
Q psy16116        440 IIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALSKHKESIGIRYIEL  518 (612)
Q Consensus       440 ~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~~~~~~iggR~IeV  518 (612)
                      .|||+|||+++|+++|+++|+.||        .+..|+|+.|+ +|+++|||||+|.+.++|++||+++++.++||.|+|
T Consensus         1 klfVgnLp~~~te~~l~~~F~~~G--------~I~~v~i~~d~~t~~~rG~~FV~f~~~~~a~~al~~~~~~i~g~~i~v   72 (75)
T d1x0fa1           1 KIFVGGLSPDTPEEKIREYFGGFG--------EVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEI   72 (75)
T ss_dssp             EEEEESCCSSCCHHHHHHHHHHHS--------CEEEEECCCCTTTCCTTCCEEEEESSSHHHHHHTTCSSCCBTTBCCEE
T ss_pred             CEEEcCCCCCCCHHHHHHHHHHhC--------CcccccccccccccccccEEEEEECCHHHHHHHHhhCCCEECCEEeEE
Confidence            499999999999999999999999        45679999987 699999999999999999999999889999999999


Q ss_pred             Eec
Q psy16116        519 FRS  521 (612)
Q Consensus       519 ~~a  521 (612)
                      ..+
T Consensus        73 k~A   75 (75)
T d1x0fa1          73 KVA   75 (75)
T ss_dssp             ECC
T ss_pred             EEC
Confidence            764

>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear factor Aly
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.68  E-value=4.5e-17  Score=134.24  Aligned_cols=75  Identities=17%  Similarity=0.206  Sum_probs=70.4

Q ss_pred             EEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEEEEE
Q psy16116        440 IIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRYIEL  518 (612)
Q Consensus       440 ~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~IeV  518 (612)
                      +|||+|||++++++||+++|++||        .+.+++|..+++|+++|||||+|.+.++|++|++ +|+..++||.|.|
T Consensus         2 rl~V~nLp~~~~~~~l~~~F~~~G--------~v~~~~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~l~V   73 (78)
T d1no8a_           2 KLLVSNLDFGVSDADIQELFAEFG--------TLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNI   73 (78)
T ss_dssp             EEEEESCCTTCCHHHHHHHHHHHS--------CEEEEEESCSSCCCSCCEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred             EEEEECCCCCCCHHHHHHHHHHhC--------CCeEEEEEEeeccccceeEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence            599999999999999999999999        4578999999999999999999999999999996 7999999999999


Q ss_pred             Eecc
Q psy16116        519 FRST  522 (612)
Q Consensus       519 ~~as  522 (612)
                      ..++
T Consensus        74 ~~a~   77 (78)
T d1no8a_          74 QLVT   77 (78)
T ss_dssp             EEEC
T ss_pred             EEee
Confidence            8764

>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA binding protein 23
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=4.3e-17  Score=141.29  Aligned_cols=78  Identities=17%  Similarity=0.123  Sum_probs=72.2

Q ss_pred             ccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHHhCCcccCCEEE
Q psy16116        438 QVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALSKHKESIGIRYI  516 (612)
Q Consensus       438 ~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~~~~~~iggR~I  516 (612)
                      .++|||+|||+++++++|+++|+.||        .+.+|+|++|. +|++||||||+|.+.++|.+||++|+..|+||.|
T Consensus        18 ~~tifV~nL~~~~te~~l~~~F~~~G--------~V~~v~i~~d~~tg~~kG~afV~F~~~e~a~~A~~l~g~~~~G~~l   89 (101)
T d2cq4a1          18 ARTVFCMQLAARIRPRDLEDFFSAVG--------KVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPI   89 (101)
T ss_dssp             HTEEEEESCCTTCCHHHHHHHHTTTS--------CEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEE
T ss_pred             CCEEEEECCCCCCCHHHHHHHHcCCC--------eEEEEEeeecCCCccccceEEEEECCHHHHHHHHHHCCCEECCEEE
Confidence            36899999999999999999999999        45679999986 6999999999999999999999999999999999


Q ss_pred             EEEecch
Q psy16116        517 ELFRSTT  523 (612)
Q Consensus       517 eV~~as~  523 (612)
                      .|..+..
T Consensus        90 ~V~~a~~   96 (101)
T d2cq4a1          90 IVQASQA   96 (101)
T ss_dssp             EEEEHHH
T ss_pred             EEEECCC
Confidence            9998753

>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins A2/B1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoproteins A2/B1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=3.7e-17  Score=142.24  Aligned_cols=78  Identities=23%  Similarity=0.365  Sum_probs=71.6

Q ss_pred             ccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHHhCCcccCCEEE
Q psy16116        438 QVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALSKHKESIGIRYI  516 (612)
Q Consensus       438 ~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~~~~~~iggR~I  516 (612)
                      .++|||+|||++++++||+++|+.||        .+..++|+.|. +++++|||||+|.+.++|++||+++++.|+||.|
T Consensus        20 ~~~lfVgnLp~~~te~~L~~~F~~~G--------~i~~~~i~~d~~~~~~kg~aFV~f~~~~~a~~al~~~~~~l~G~~i   91 (103)
T d1x4ba1          20 FRKLFIGGLSFETTEESLRNYYEQWG--------KLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVV   91 (103)
T ss_dssp             HTEEEEECCTTCCCHHHHHHHHTSSC--------CCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEE
T ss_pred             CCEEEEeCCCCcCCHHHHHHHHHhhC--------cccceeecccccCCCccCeEEEEECCHHHHHHHHHhCCCeECCEEE
Confidence            36799999999999999999999999        44679999887 6789999999999999999999999999999999


Q ss_pred             EEEecch
Q psy16116        517 ELFRSTT  523 (612)
Q Consensus       517 eV~~as~  523 (612)
                      .|..+..
T Consensus        92 ~V~~a~~   98 (103)
T d1x4ba1          92 EPKRAVA   98 (103)
T ss_dssp             EEECCSS
T ss_pred             EEEECcc
Confidence            9988754

>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Sex-lethal protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.67  E-value=6.7e-17  Score=133.76  Aligned_cols=76  Identities=17%  Similarity=0.236  Sum_probs=70.2

Q ss_pred             cEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEEE
Q psy16116        439 VIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIRYI  516 (612)
Q Consensus       439 ~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~I  516 (612)
                      .+|||+|||+++++++|+++|+.||        .+..++|+.|+ +|+++|||||+|.+.++|++||+ +|+..++||.|
T Consensus         3 t~l~V~nLp~~~t~~~l~~~F~~~G--------~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~ai~~lng~~~~g~~l   74 (82)
T d1b7fa1           3 TNLIVNYLPQDMTDRELYALFRAIG--------PINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRL   74 (82)
T ss_dssp             SEEEEECCCTTCCHHHHHHHHHTTS--------CEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred             CEEEEeCCCCCCCHHHHHHHHHHhC--------CcceeeeeeecccCCccccceEEECCHHHHHHHHHHhCCCEECCEEE
Confidence            5799999999999999999999999        45679998876 78999999999999999999996 79999999999


Q ss_pred             EEEecc
Q psy16116        517 ELFRST  522 (612)
Q Consensus       517 eV~~as  522 (612)
                      .|..+.
T Consensus        75 ~v~~a~   80 (82)
T d1b7fa1          75 KVSYAR   80 (82)
T ss_dssp             EEEECC
T ss_pred             EEEEcC
Confidence            999875

>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.1e-16  Score=132.32  Aligned_cols=75  Identities=16%  Similarity=0.228  Sum_probs=69.9

Q ss_pred             EEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEEEE
Q psy16116        440 IIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIRYIE  517 (612)
Q Consensus       440 ~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~Ie  517 (612)
                      .|||+|||+++|+++|+++|+.+|        .+.+|+|+.|+ +|+++|||||+|.+.++|.+|++ +|+..++||.|+
T Consensus         2 slfV~nL~~~~te~~l~~~F~~~G--------~i~~v~i~~d~~tg~~~g~aFV~f~~~~~a~~ai~~l~g~~~~gr~i~   73 (80)
T d1cvja1           2 SLYVGDLHPDVTEAMLYEKFSPAG--------PILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVR   73 (80)
T ss_dssp             EEEEESCCTTCCHHHHHHHHGGGS--------CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHTTSTTCEETTEECE
T ss_pred             EEEEeCCCCcCCHHHHHHHHHHhC--------CEeEEEEEecccccCCCCceEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence            499999999999999999999999        45789999987 69999999999999999999996 799999999999


Q ss_pred             EEecc
Q psy16116        518 LFRST  522 (612)
Q Consensus       518 V~~as  522 (612)
                      |..+.
T Consensus        74 v~~a~   78 (80)
T d1cvja1          74 IMWSQ   78 (80)
T ss_dssp             EEECC
T ss_pred             EEEeC
Confidence            98875

>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Lupus LA protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.2e-16  Score=133.87  Aligned_cols=76  Identities=14%  Similarity=0.248  Sum_probs=70.8

Q ss_pred             ccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCcccCCEEEE
Q psy16116        438 QVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALSKHKESIGIRYIE  517 (612)
Q Consensus       438 ~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~~~~~~iggR~Ie  517 (612)
                      .++|||+|||+++|++||+++|+.+|        .+.+|+|..+.+|+++|||||+|.++++|++||++++..++||.|.
T Consensus         6 ~rtvfV~nlp~~~te~~l~~~F~~~G--------~v~~v~l~~~~~~~~kG~afV~f~~~e~a~~al~~~~~~~~g~~l~   77 (85)
T d1zh5a2           6 NRSVYIKGFPTDATLDDIKEWLEDKG--------QVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLL   77 (85)
T ss_dssp             TTEEEEECCCTTCCHHHHHHHHTTSC--------CEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHTCCCCEETTEECE
T ss_pred             cCEEEEECCCCCCCHHHHHHHHHHhc--------ccccceeeeeccCCcceEEEEEEcCHHHHHHHHHHCCCEECCEEEE
Confidence            36799999999999999999999999        4567999999999999999999999999999999999999999999


Q ss_pred             EEec
Q psy16116        518 LFRS  521 (612)
Q Consensus       518 V~~a  521 (612)
                      |...
T Consensus        78 v~~~   81 (85)
T d1zh5a2          78 ILFK   81 (85)
T ss_dssp             EEEG
T ss_pred             EEEc
Confidence            9764

>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.66  E-value=1e-16  Score=133.88  Aligned_cols=78  Identities=27%  Similarity=0.497  Sum_probs=69.5

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRY  515 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~  515 (612)
                      ...+|||+|||++++++||++||+.+|.    |   ...+.+..+.+|+++|+|||+|.+.++|++||+ +|+..|+||.
T Consensus         8 ~~~~l~v~nLp~~~~~~di~~~F~~~~~----~---~~~~~~~~~~~g~~~G~afV~f~~~e~a~~Ai~~l~~~~l~gr~   80 (86)
T d2cqpa1           8 GPTIIKVQNMPFTVSIDEILDFFYGYQV----I---PGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRK   80 (86)
T ss_dssp             SSEEEEEESCCTTCCHHHHHHHTTTSCC----C---TTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEE
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHhhccc----c---eeEEEEEeCCCCCcceEEEEEEcCcHHHHHHHHHcCCCEECCEE
Confidence            3467999999999999999999999993    3   235778888899999999999999999999996 6999999999


Q ss_pred             EEEEec
Q psy16116        516 IELFRS  521 (612)
Q Consensus       516 IeV~~a  521 (612)
                      |+|..+
T Consensus        81 i~v~l~   86 (86)
T d2cqpa1          81 VKLVLG   86 (86)
T ss_dssp             CEEEES
T ss_pred             EEEEEC
Confidence            999863

>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hu antigen D (Hud)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=1.9e-16  Score=130.87  Aligned_cols=77  Identities=18%  Similarity=0.260  Sum_probs=70.3

Q ss_pred             cEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEEE
Q psy16116        439 VIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIRYI  516 (612)
Q Consensus       439 ~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~I  516 (612)
                      .+|||+|||++++++||+++|+.||        .+..|+|+.|. +|+++|||||+|.+.++|++|++ +|+..++||.|
T Consensus         3 t~l~V~nLp~~~te~~l~~~f~~~G--------~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l   74 (82)
T d1fxla1           3 TNLIVNYLPQNMTQEEFRSLFGSIG--------EIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTI   74 (82)
T ss_dssp             SEEEEESCCTTCCHHHHHHHHHTTS--------CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHhC--------CcccccceeeccCCCceeeEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence            4699999999999999999999999        45679999886 68999999999999999999996 79999999999


Q ss_pred             EEEecch
Q psy16116        517 ELFRSTT  523 (612)
Q Consensus       517 eV~~as~  523 (612)
                      .|..+.+
T Consensus        75 ~v~~AkP   81 (82)
T d1fxla1          75 KVSYARP   81 (82)
T ss_dssp             EEEECCC
T ss_pred             EEEEeeC
Confidence            9988753

>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Neural RNA-binding protein Musashi-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.66  E-value=5.9e-17  Score=131.61  Aligned_cols=73  Identities=23%  Similarity=0.340  Sum_probs=67.1

Q ss_pred             EEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHHhCCcccCCEEEEEE
Q psy16116        441 IRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALSKHKESIGIRYIELF  519 (612)
Q Consensus       441 VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~~~~~~iggR~IeV~  519 (612)
                      |||+|||+++||+||+++|+.||        .+..+.++.++ +|+++|||||+|.+.++|++||++|++.|+||.|+|.
T Consensus         2 lfV~nLp~~~te~~l~~~F~~~G--------~i~~~~~~~~~~~~~~~~~afV~F~~~~~a~~al~~~~~~l~gr~i~V~   73 (75)
T d2msta_           2 IFVGGLSVNTTVEDVKHYFEQFG--------KVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECK   73 (75)
T ss_dssp             EEEECCCSSCCHHHHHHHHHTTS--------CCSEECCBCCTTCTTSCCEEEEECSCHHHHHHHHHCSSCCBTTBCCEEE
T ss_pred             EEEeCCCCCCCHHHHHHHHHHhC--------CcceeeeeeeccccccCceeEEEECCHHHHHHHHhcCCCEECCeEEEEE
Confidence            89999999999999999999999        34567887776 6899999999999999999999999999999999998


Q ss_pred             ec
Q psy16116        520 RS  521 (612)
Q Consensus       520 ~a  521 (612)
                      .|
T Consensus        74 ~A   75 (75)
T d2msta_          74 KA   75 (75)
T ss_dssp             EC
T ss_pred             EC
Confidence            64

>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 8
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.66  E-value=1.4e-16  Score=134.14  Aligned_cols=79  Identities=15%  Similarity=0.086  Sum_probs=71.8

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIR  514 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR  514 (612)
                      ++++|||+|||++++++||+++|+.||        .+.+|+|+.|+ +|+++|||||+|.+.++|++|++ +|+..++||
T Consensus         6 ~~~~l~V~nL~~~~t~~~l~~~F~~~G--------~i~~v~i~~d~~tg~~~g~afV~f~~~~~A~~A~~~lng~~l~g~   77 (88)
T d1rk8a_           6 EGWILFVTSIHEEAQEDEIQEKFCDYG--------EIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQ   77 (88)
T ss_dssp             -CEEEEEESCCTTCCHHHHHHHHGGGS--------CEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHcC--------CcccccccccccccccccceeEEECCHHHHHHHHHHcCCCEECCE
Confidence            457899999999999999999999999        45679999986 79999999999999999999996 799999999


Q ss_pred             EEEEEecch
Q psy16116        515 YIELFRSTT  523 (612)
Q Consensus       515 ~IeV~~as~  523 (612)
                      .|.|..+..
T Consensus        78 ~l~V~~a~~   86 (88)
T d1rk8a_          78 TIQVDWCFV   86 (88)
T ss_dssp             ECEEEESEE
T ss_pred             EEEEEEecC
Confidence            999988753

>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.66  E-value=1.2e-16  Score=130.98  Aligned_cols=74  Identities=18%  Similarity=0.159  Sum_probs=67.7

Q ss_pred             EEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCcccCCEEEEEE
Q psy16116        440 IIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALSKHKESIGIRYIELF  519 (612)
Q Consensus       440 ~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~~~~~~iggR~IeV~  519 (612)
                      +|||+|||+++++++|++||+.||        .+..|+++.+++++ +|||||+|+++++|++||++|++.|+||.|+|.
T Consensus         2 tv~V~nlp~~~t~~~l~~~F~~~G--------~I~~v~~~~~~~~~-~~~afV~F~~~~~a~~Al~~~~~~i~g~~i~V~   72 (75)
T d2ghpa2           2 TVLVKNLPKSYNQNKVYKYFKHCG--------PIIHVDVADSLKKN-FRFARIEFARYDGALAAITKTHKVVGQNEIIVS   72 (75)
T ss_dssp             EEEEEEECTTCCHHHHHHHHGGGS--------CEEEEEEEECTTSS-SEEEEEEESSHHHHHHHHTTTTCEETTEECEEE
T ss_pred             EEEEECCCCCCCHHHHHHHHhcCC--------ceEEEEEEeecccc-ceEEEEEEcchHHhHHHHHhcCcEECCEEEEEE
Confidence            699999999999999999999999        45779999887765 579999999999999999999999999999998


Q ss_pred             ecc
Q psy16116        520 RST  522 (612)
Q Consensus       520 ~as  522 (612)
                      .++
T Consensus        73 ~~T   75 (75)
T d2ghpa2          73 HLT   75 (75)
T ss_dssp             ECC
T ss_pred             ECC
Confidence            753

>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor 10 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Arginine/serine-rich splicing factor 10
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=1.9e-16  Score=131.53  Aligned_cols=74  Identities=22%  Similarity=0.274  Sum_probs=68.2

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIR  514 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR  514 (612)
                      ...+|||+|||+++|+++|+++|+.||        .+.+|+|++|+ +|+++|||||+|.+.++|++||+ +|+..++||
T Consensus         8 ~~~~l~V~nL~~~~te~~l~~~F~~~G--------~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gr   79 (83)
T d2cqca1           8 PNCCLGVFGLSLYTTERDLREVFSKYG--------PIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGR   79 (83)
T ss_dssp             GGGCEEEESCCSSCCHHHHHHHHHTTS--------CEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHhC--------CCccccccccccccccccceEEEECCHHHHHHHHHHcCCCEECCE
Confidence            356799999999999999999999999        45679999987 68999999999999999999996 799999999


Q ss_pred             EEEE
Q psy16116        515 YIEL  518 (612)
Q Consensus       515 ~IeV  518 (612)
                      .|+|
T Consensus        80 ~i~V   83 (83)
T d2cqca1          80 RIRV   83 (83)
T ss_dssp             EEEE
T ss_pred             EeEC
Confidence            9987

>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Peptidyl-prolyl cis-trans isomerase E, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=8.7e-17  Score=135.62  Aligned_cols=78  Identities=22%  Similarity=0.178  Sum_probs=71.1

Q ss_pred             ccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEE
Q psy16116        438 QVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIRY  515 (612)
Q Consensus       438 ~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~  515 (612)
                      ..+|||+|||++++++||+++|+.||        .+.+|+|+.|+ +|+++|||||+|.+.++|++|++ +|+..++||.
T Consensus         5 ~~tlfV~nLp~~~te~~l~~~F~~~G--------~i~~v~i~~d~~~~~~kg~afV~f~~~~~A~~ai~~l~~~~i~g~~   76 (89)
T d2cqba1           5 KRVLYVGGLAEEVDDKVLHAAFIPFG--------DITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRT   76 (89)
T ss_dssp             CSCEEEESCCSSCCHHHHHHHHTTTS--------CCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEE
T ss_pred             CcEEEEeCCCCcCCHHHHHHHHhhCC--------eEEecccccccccccccceeEEEECCHHHHHHHHHHcCCCEECCEE
Confidence            35799999999999999999999999        44679999887 69999999999999999999996 7999999999


Q ss_pred             EEEEecch
Q psy16116        516 IELFRSTT  523 (612)
Q Consensus       516 IeV~~as~  523 (612)
                      |.|..+.+
T Consensus        77 l~v~~a~p   84 (89)
T d2cqba1          77 IRVNLAKP   84 (89)
T ss_dssp             EEEEECCC
T ss_pred             EEEEEeCC
Confidence            99998753

>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor 3B subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=1e-16  Score=136.50  Aligned_cols=79  Identities=19%  Similarity=0.235  Sum_probs=72.2

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIR  514 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR  514 (612)
                      ...+|||+|||++++++||+++|+.||        .+.+|+|+.|+ +|+++|||||+|.+.++|++||+ +|+..++||
T Consensus         8 ~~~tlfV~nLp~~~t~~~l~~~F~~~G--------~v~~v~~~~d~~tg~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~   79 (93)
T d1x5ua1           8 QDATVYVGGLDEKVSEPLLWELFLQAG--------PVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGK   79 (93)
T ss_dssp             TTTEEEEECCCTTCCHHHHHHHHHTTS--------CEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSC
T ss_pred             CCCEEEEeCCCCcCCHHHHHHHHHHhC--------CccccceeecccccccccceEEEECCHHHHHHHHHHcCCCEECCE
Confidence            456899999999999999999999999        45679999886 79999999999999999999996 799999999


Q ss_pred             EEEEEecch
Q psy16116        515 YIELFRSTT  523 (612)
Q Consensus       515 ~IeV~~as~  523 (612)
                      .|+|..+..
T Consensus        80 ~l~V~~A~~   88 (93)
T d1x5ua1          80 PIRVNKASA   88 (93)
T ss_dssp             BCEEEETTT
T ss_pred             EEEEEEcCC
Confidence            999998764

>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolin
species: Golden hamster (Mesocricetus auratus) [TaxId: 10036]

Probab=99.65  E-value=1.6e-17  Score=141.16  Aligned_cols=78  Identities=15%  Similarity=0.093  Sum_probs=71.1

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCcccCCEEE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALSKHKESIGIRYI  516 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~~~~~~iggR~I  516 (612)
                      ..++|||+|||+++++++|+++|+.||        .+..+.|+.+.+|+++|||||+|.+.++|++||++|+..++||.|
T Consensus        12 ~~~~ifV~nL~~~~te~~l~~~F~~~G--------~i~~~~v~~~~~g~~kg~afv~F~~~e~a~~Al~~~g~~~~g~~i   83 (91)
T d1fjeb1          12 TPFNLFIGNLNPNKSVAELKVAISELF--------AKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEI   83 (91)
T ss_dssp             SSEEEEEECCCTTSCHHHHHHHHHHHH--------HHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEE
T ss_pred             CCcEEEEeCccCcchHHHHHHHHhcCC--------cEEEeeeeecCCCCccEEeEEeeCCHHHHHHHHhcCCcEECCEEE
Confidence            457899999999999999999999999        335577777778999999999999999999999999999999999


Q ss_pred             EEEecc
Q psy16116        517 ELFRST  522 (612)
Q Consensus       517 eV~~as  522 (612)
                      +|..+.
T Consensus        84 ~V~~ak   89 (91)
T d1fjeb1          84 KLEKPK   89 (91)
T ss_dssp             EEECCC
T ss_pred             EEEecC
Confidence            999875

>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.65  E-value=1.5e-16  Score=131.43  Aligned_cols=77  Identities=13%  Similarity=0.068  Sum_probs=63.4

Q ss_pred             cEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeC-CCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEEE
Q psy16116        439 VIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKK-PDGKATGDAFVLFEKEEEADKALS-KHKESIGIRYI  516 (612)
Q Consensus       439 ~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d-~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~I  516 (612)
                      .+|||+|||+++|++||+++|+.||    .|    ..+.++.+ ..|+++|||||+|.+.++|++|++ +|+..++||.|
T Consensus         2 ~tl~v~nLp~~~t~~~l~~~f~~~G----~v----~~~~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~i   73 (81)
T d2ghpa1           2 CTLWMTNFPPSYTQRNIRDLLQDIN----VV----ALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTL   73 (81)
T ss_dssp             CEEEEECCCTTCCHHHHHHHHHHTT----CC----CCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred             cEEEEECCCCcCCHHHHHHHHHHhC----cE----EeeeeecccccccccceeEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence            5799999999999999999999999    33    44666555 479999999999999999999996 79999999999


Q ss_pred             EEEecch
Q psy16116        517 ELFRSTT  523 (612)
Q Consensus       517 eV~~as~  523 (612)
                      .|..+.+
T Consensus        74 ~V~~a~P   80 (81)
T d2ghpa1          74 VTKVSNP   80 (81)
T ss_dssp             EEEECCC
T ss_pred             EEEEccC
Confidence            9998753

>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.65  E-value=1.7e-16  Score=136.25  Aligned_cols=78  Identities=23%  Similarity=0.240  Sum_probs=71.3

Q ss_pred             ccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEE
Q psy16116        438 QVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIRY  515 (612)
Q Consensus       438 ~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~  515 (612)
                      ..+|||+|||++++++||+++|+.||        .+..|+|+.|. +|+++|||||+|.+.++|++||+ +|+..|+||.
T Consensus         8 ~~~lfV~nL~~~~t~~~l~~~F~~~g--------~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~A~~~l~g~~~~gr~   79 (99)
T d1whwa_           8 SGRLFVRNLSYTSSEEDLEKLFSAYG--------PLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRM   79 (99)
T ss_dssp             CEEEEEECCCTTCCHHHHHHHHHTTS--------CEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCE
T ss_pred             CCEEEEECCCCcCCHHHHHHHHHhcC--------CceeeeecccccccccCcceEEEECCHHHHHHHHHHcCCCEECCEE
Confidence            45799999999999999999999999        45679999886 79999999999999999999996 7999999999


Q ss_pred             EEEEecch
Q psy16116        516 IELFRSTT  523 (612)
Q Consensus       516 IeV~~as~  523 (612)
                      |.|..+..
T Consensus        80 i~V~~a~~   87 (99)
T d1whwa_          80 LHVLPSTI   87 (99)
T ss_dssp             EEEEECCC
T ss_pred             EEEEECCC
Confidence            99998764

>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding region containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=2e-16  Score=137.03  Aligned_cols=77  Identities=23%  Similarity=0.308  Sum_probs=69.6

Q ss_pred             ccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHHhCCcccCCEEE
Q psy16116        438 QVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALSKHKESIGIRYI  516 (612)
Q Consensus       438 ~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~~~~~~iggR~I  516 (612)
                      ..+|||+|||++++++||+++|+.||        .+.+|+|+.|. +|+++|||||+|.+.++|++||+..+..|+||.|
T Consensus        10 ~~~lfV~nLp~~~te~~l~~~F~~~G--------~i~~v~i~~d~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~Gr~l   81 (103)
T d2cqda1          10 FTKIFVGGLPYHTTDASLRKYFEGFG--------DIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKA   81 (103)
T ss_dssp             SSEEEEECCCSSCCHHHHHHHHHTTS--------CEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEEC
T ss_pred             CcEEEEeCCCCcCcHHHHHHHHhhcc--------cccceeccccccccccCCeEEEEECCHHHHHHHHHHCCCcCCCEEE
Confidence            45799999999999999999999999        45679999987 6999999999999999999999865568999999


Q ss_pred             EEEecc
Q psy16116        517 ELFRST  522 (612)
Q Consensus       517 eV~~as  522 (612)
                      .|..+.
T Consensus        82 ~V~~a~   87 (103)
T d2cqda1          82 NVNLAY   87 (103)
T ss_dssp             EEEEST
T ss_pred             EEEEcC
Confidence            998765

>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.64  E-value=8.6e-17  Score=134.93  Aligned_cols=78  Identities=22%  Similarity=0.236  Sum_probs=67.3

Q ss_pred             ccEEEEeCCCCCCC-HHHHHHHHhcCCCCccccccCceeEEEeeC--CCCCceeEEEEEeCCHHHHHHHHHhCCcccCCE
Q psy16116        438 QVIIRMRGLPYECT-AKQVIDFFEAGTENSCNVMDGEEGVLFVKK--PDGKATGDAFVLFEKEEEADKALSKHKESIGIR  514 (612)
Q Consensus       438 ~~~VfV~nLP~s~t-e~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d--~~GrskG~AFV~F~s~edA~kAL~~~~~~iggR  514 (612)
                      +++|||+|||++++ +++|+++|+.||        .+++|+|+.+  .+|+++|||||+|.+.++|++||++|+..++||
T Consensus         4 ~~~l~V~nLp~~~t~ed~l~~~F~~~G--------~i~~v~i~~~~~~~~~~kg~afV~f~~~~~a~~Al~~n~~~~~gr   75 (86)
T d2ghpa3           4 GREIMIRNLSTELLDENLLRESFEGFG--------SIEKINIPAGQKEHSFNNCCAFMVFENKDSAERALQMNRSLLGNR   75 (86)
T ss_dssp             TTEEEEEEECTTTCCHHHHHHHHGGGS--------CEEEEECCSCCC---CCCEEEEEEESSHHHHHHHGGGTTEEETTE
T ss_pred             CCEEEEECCCCCcccHHHHHHHHHhhh--------hccceeeecccCCccccceeeeEEECCHHHHHHHHhcCCCEECCE
Confidence            46899999999986 566999999999        4577888765  378999999999999999999999999999999


Q ss_pred             EEEEEecch
Q psy16116        515 YIELFRSTT  523 (612)
Q Consensus       515 ~IeV~~as~  523 (612)
                      .|+|..+.+
T Consensus        76 ~l~V~~a~~   84 (86)
T d2ghpa3          76 EISVSLADK   84 (86)
T ss_dssp             EEEEEECCC
T ss_pred             EEEEEEcCC
Confidence            999998754

>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=1.4e-16  Score=133.39  Aligned_cols=76  Identities=20%  Similarity=0.255  Sum_probs=70.6

Q ss_pred             cEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEEE
Q psy16116        439 VIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIRYI  516 (612)
Q Consensus       439 ~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~I  516 (612)
                      ++|||+|||+++||+||+++|+.||        .+.+|+|++|+ +|+++|||||+|.++++|++|++ +|+..|+||.|
T Consensus         2 ~rlfV~nlp~~~te~~l~~~F~~~G--------~v~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~a~~~l~~~~l~g~~l   73 (85)
T d2u2fa_           2 HKLFIGGLPNYLNDDQVKELLTSFG--------PLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKL   73 (85)
T ss_dssp             CCEEEETCCSSCCSHHHHHHHTSSS--------CEEEEEEECCCSSSCCCCEEEEEESSSHHHHHHHHTSSSCCCSSSCC
T ss_pred             CEEEEECCCCCCCHHHHHHHHHhcC--------ccceEEeeccccccccceeEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence            3599999999999999999999999        45779999987 69999999999999999999998 79999999999


Q ss_pred             EEEecc
Q psy16116        517 ELFRST  522 (612)
Q Consensus       517 eV~~as  522 (612)
                      .|..++
T Consensus        74 ~V~~A~   79 (85)
T d2u2fa_          74 LVQRAS   79 (85)
T ss_dssp             EEEECC
T ss_pred             EEEECC
Confidence            999875

>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: CBP20, 20KDa nuclear cap-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=5.1e-16  Score=132.08  Aligned_cols=77  Identities=16%  Similarity=0.231  Sum_probs=70.9

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIR  514 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR  514 (612)
                      .+.+|||+|||+++|+++|+++|+.+|        .+.+|+|+.++ +|+++|||||+|.+.++|++||+ +|+..++||
T Consensus         6 ~s~tlfV~nlp~~~te~~l~~~F~~~G--------~i~~v~i~~~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~gr   77 (93)
T d1h2vz_           6 KSCTLYVGNLSFYTTEEQIYELFSKSG--------DIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDR   77 (93)
T ss_dssp             TCCEEEEESCCTTCCHHHHHHHHGGGS--------CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHC--------CcceeccccccccccccceEEEEECCHHHHHHHHHHhCCCEECCE
Confidence            346899999999999999999999999        45789999987 68999999999999999999996 799999999


Q ss_pred             EEEEEec
Q psy16116        515 YIELFRS  521 (612)
Q Consensus       515 ~IeV~~a  521 (612)
                      .|.|..+
T Consensus        78 ~i~V~~a   84 (93)
T d1h2vz_          78 IIRTDWD   84 (93)
T ss_dssp             ECEEEEE
T ss_pred             EEEEEEc
Confidence            9999875

>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Cleavage stimulation factor, 64 kda subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=2.4e-16  Score=136.38  Aligned_cols=79  Identities=20%  Similarity=0.287  Sum_probs=71.7

Q ss_pred             cEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEEE
Q psy16116        439 VIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIRYI  516 (612)
Q Consensus       439 ~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~I  516 (612)
                      ++|||+|||+++++++|+++|+.||        .+.+|+|+.++ +|+++|||||+|.+.++|++||+ +|+..|+||.|
T Consensus         9 rtl~V~nLp~~~te~~l~~~f~~~G--------~i~~v~i~~~~~tg~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~i   80 (104)
T d1p1ta_           9 RSVFVGNIPYEATEEQLKDIFSEVG--------PVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRAL   80 (104)
T ss_dssp             SCEEEESCCTTSCHHHHHHHHHTTS--------CCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCB
T ss_pred             CEEEEECCCCcCCHHHHHHhhhccc--------cccccccccccceeccCCceEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence            5699999999999999999999999        44679999886 69999999999999999999996 69999999999


Q ss_pred             EEEecchHH
Q psy16116        517 ELFRSTTAE  525 (612)
Q Consensus       517 eV~~as~~e  525 (612)
                      .|..+..++
T Consensus        81 ~V~~a~~~~   89 (104)
T d1p1ta_          81 RVDNAASEK   89 (104)
T ss_dssp             EEEETTCTT
T ss_pred             EEEECCCCC
Confidence            999986543

>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Eukaryotic translation initiation factor 3 subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=3.2e-16  Score=132.36  Aligned_cols=79  Identities=16%  Similarity=0.276  Sum_probs=72.1

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIR  514 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR  514 (612)
                      ...+|||+|||+++++++|+++|+.||        .+.+|+|+.|. +|+++|||||+|.+.++|++||+ +|+..++||
T Consensus         7 ~~~~i~V~nLp~~~t~~~l~~~f~~~G--------~v~~v~i~~d~~t~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~g~   78 (90)
T d2cq0a1           7 DNATIRVTNLSEDTRETDLQELFRPFG--------SISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHL   78 (90)
T ss_dssp             SSEEEEEESCCTTCCHHHHHTTSTTTC--------CEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTE
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHhc--------ccccccccccccccccccceeEEECCHHHHHHHHHHhCCCEECCE
Confidence            446899999999999999999999999        45679999986 69999999999999999999997 799999999


Q ss_pred             EEEEEecch
Q psy16116        515 YIELFRSTT  523 (612)
Q Consensus       515 ~IeV~~as~  523 (612)
                      .|.|..+.+
T Consensus        79 ~i~v~~akp   87 (90)
T d2cq0a1          79 ILNVEWAKP   87 (90)
T ss_dssp             ECEEEESSC
T ss_pred             EEEEEeeeC
Confidence            999998754

>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: CUG triplet repeat RNA-binding protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=4.1e-16  Score=134.87  Aligned_cols=79  Identities=13%  Similarity=0.153  Sum_probs=70.9

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIR  514 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR  514 (612)
                      .+.+|||+|||++++++||+++|+.||        .+.++.++.+. +|+++|||||+|.+.++|++||+ +|+..|+||
T Consensus        17 ~~~~l~V~nLp~~~te~~l~~~F~~~G--------~i~~~~~~~~~~~g~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~   88 (102)
T d2cpza1          17 EGANLFIYHLPQEFGDQDLLQMFMPFG--------NVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMK   88 (102)
T ss_dssp             TTCCEEEESCCSSCCHHHHHHHHGGGS--------CCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhhc--------cccccceeeecccCCCccceEEEeCCHHHHHHHHHHhCCCEECCE
Confidence            346799999999999999999999999        34568888876 78999999999999999999995 799999999


Q ss_pred             EEEEEecch
Q psy16116        515 YIELFRSTT  523 (612)
Q Consensus       515 ~IeV~~as~  523 (612)
                      .|.|..+..
T Consensus        89 ~i~V~~a~~   97 (102)
T d2cpza1          89 RLKVQLKRS   97 (102)
T ss_dssp             ECEEECCCC
T ss_pred             EEEEEEeCC
Confidence            999988753

>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Cold-inducible RNA-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=2.5e-16  Score=132.66  Aligned_cols=77  Identities=21%  Similarity=0.298  Sum_probs=69.3

Q ss_pred             ccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEE
Q psy16116        438 QVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIRY  515 (612)
Q Consensus       438 ~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~  515 (612)
                      ..+|||+|||++++++||+++|+.||        .+..+.++.+. +|+++|||||+|.++++|++||+ +|+..++||.
T Consensus         5 ~~kifV~nLp~~~t~~~l~~~F~~~G--------~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~Ai~~l~~~~~~g~~   76 (90)
T d1x5sa1           5 EGKLFVGGLSFDTNEQSLEQVFSKYG--------QISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQ   76 (90)
T ss_dssp             CSEEEEESCCTTCCHHHHHHHHHHHS--------CCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCC
T ss_pred             CCEEEEECCCCcCCHHHHHHhhhccc--------cccceeeccccccccccceEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence            45699999999999999999999999        34568887765 78999999999999999999995 7999999999


Q ss_pred             EEEEecc
Q psy16116        516 IELFRST  522 (612)
Q Consensus       516 IeV~~as  522 (612)
                      |.|..+.
T Consensus        77 l~V~~a~   83 (90)
T d1x5sa1          77 IRVDQAG   83 (90)
T ss_dssp             CEEEEEE
T ss_pred             EEEEEcC
Confidence            9998875

>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor 3B subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=4.4e-16  Score=129.20  Aligned_cols=76  Identities=22%  Similarity=0.284  Sum_probs=67.4

Q ss_pred             EEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEEEEE
Q psy16116        441 IRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIRYIEL  518 (612)
Q Consensus       441 VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~IeV  518 (612)
                      |||+|||++++++||+++|+.+|    .|+   ..+++++|. +|+++|||||+|.+.++|++||+ +++..++||.|.|
T Consensus         1 lfV~nLp~~~te~~l~~~F~~~G----~i~---~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~g~~~~gr~l~v   73 (83)
T d1x5ta1           1 IFIGNLDPEIDEKLLYDTFSAFG----VIL---QTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITV   73 (83)
T ss_dssp             EEEECCCTTCCHHHHHHHHHTTS----CBS---SCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEE
T ss_pred             CEEcCCCCcCcHHHHHHHHHHhC----cee---eeEEEEeeccccccCceEEEEECCHHHHHHHHHhCCCcEECCEEEEE
Confidence            79999999999999999999999    332   335777776 69999999999999999999996 7999999999999


Q ss_pred             Eecch
Q psy16116        519 FRSTT  523 (612)
Q Consensus       519 ~~as~  523 (612)
                      ..+.+
T Consensus        74 ~~a~~   78 (83)
T d1x5ta1          74 SYAFK   78 (83)
T ss_dssp             EESCC
T ss_pred             EEecC
Confidence            98753

>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.61  E-value=6.9e-16  Score=128.52  Aligned_cols=74  Identities=22%  Similarity=0.265  Sum_probs=66.3

Q ss_pred             EEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCC----CCceeEEEEEeCCHHHHHHHHH-hCCcccCCEE
Q psy16116        441 IRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPD----GKATGDAFVLFEKEEEADKALS-KHKESIGIRY  515 (612)
Q Consensus       441 VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~----GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~  515 (612)
                      |||+|||+++|+++|+++|+.||        .+.+++|+.+++    ++++|||||+|.+.++|++|++ +|+..++||.
T Consensus         1 LfV~nLp~~~t~~~l~~~F~~~G--------~v~~v~i~~~~~~~~~~~~kG~afV~f~~~~~A~~A~~~~~~~~~~g~~   72 (85)
T d2cpfa1           1 LFIKNLNFSTTEETLKGVFSKVG--------AIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHK   72 (85)
T ss_dssp             EEEESCCTTCCHHHHHHHHHTTS--------CEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEE
T ss_pred             CEEcCCCCCCCHHHHHHHHHHhC--------CccccceecccccccccccceEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence            79999999999999999999999        456789887753    2579999999999999999996 7999999999


Q ss_pred             EEEEecc
Q psy16116        516 IELFRST  522 (612)
Q Consensus       516 IeV~~as  522 (612)
                      |.|..+.
T Consensus        73 i~V~~a~   79 (85)
T d2cpfa1          73 LEVRISE   79 (85)
T ss_dssp             CEEECSS
T ss_pred             EEEEECC
Confidence            9998764

>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=1.2e-15  Score=129.58  Aligned_cols=78  Identities=22%  Similarity=0.300  Sum_probs=70.2

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRY  515 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~  515 (612)
                      ...+|||+|||+++++++|+++|+.||        .+..|+++.+..+ ++|||||+|.+.++|++||+ +|+..++||.
T Consensus        10 ~~~~l~v~nLp~~~t~~~L~~~F~~~G--------~v~~v~~~~~~~~-~kg~afV~f~~~~~a~~Ai~~l~~~~~~g~~   80 (93)
T d2cq3a1          10 TPKRLHVSNIPFRFRDPDLRQMFGQFG--------KILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEGRK   80 (93)
T ss_dssp             CCCEEEEESCCTTCCHHHHHHHGGGTS--------CEEEEEEECCTTT-TCCEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHhhcc--------eeeeccccccccC-CcceeEEEECCHHHHHHHHHHcCCCEECCEE
Confidence            456799999999999999999999999        4567999888655 79999999999999999996 7999999999


Q ss_pred             EEEEecch
Q psy16116        516 IELFRSTT  523 (612)
Q Consensus       516 IeV~~as~  523 (612)
                      |.|..+..
T Consensus        81 l~V~~A~~   88 (93)
T d2cq3a1          81 IEVNNATA   88 (93)
T ss_dssp             CEEEECCS
T ss_pred             EEEEecCc
Confidence            99998764

>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.61  E-value=4.3e-16  Score=132.78  Aligned_cols=80  Identities=23%  Similarity=0.317  Sum_probs=71.2

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC--CCCceeEEEEEeCCHHHHHHHHH-h-CCcccC
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP--DGKATGDAFVLFEKEEEADKALS-K-HKESIG  512 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~--~GrskG~AFV~F~s~edA~kAL~-~-~~~~ig  512 (612)
                      ...+|||+|||+++++++|+++|+.||        .+.+|+|+.+.  +|+++|||||+|.+.++|.+||+ + |+..++
T Consensus         7 ~~~~l~V~nLp~~~~e~~l~~~F~~~G--------~i~~v~i~~~~~~~g~~rg~afV~f~~~~~A~~Ai~~l~~~~~~~   78 (94)
T d2cpha1           7 TTSKILVRNIPFQANQREIRELFSTFG--------ELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLY   78 (94)
T ss_dssp             CCCCEEEESCCTTCCHHHHHHHHHTTS--------CEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSS
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHhC--------CceEEEEEeccccCCCcccEEEEEECCHHHHHHHHHHccCCcEEC
Confidence            345699999999999999999999999        45679998774  68999999999999999999996 5 899999


Q ss_pred             CEEEEEEecchH
Q psy16116        513 IRYIELFRSTTA  524 (612)
Q Consensus       513 gR~IeV~~as~~  524 (612)
                      ||.|.|..+..+
T Consensus        79 Gr~l~V~~A~~~   90 (94)
T d2cpha1          79 GRRLVLEWADSE   90 (94)
T ss_dssp             SCBCEEEECCCC
T ss_pred             CEEEEEEEcCCC
Confidence            999999988643

>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein UBP1
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.61  E-value=5.8e-16  Score=140.49  Aligned_cols=78  Identities=18%  Similarity=0.176  Sum_probs=71.7

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIR  514 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR  514 (612)
                      ..++|||+|||++++++||+++|+.||        .+.+|+|+.|+ +|+++|||||+|.+.++|++||+ +|+..|+||
T Consensus        41 ~~~~l~V~nLp~~~te~~l~~~F~~~G--------~i~~v~i~~d~~t~~~rg~afV~f~~~~~A~~Ai~~lng~~~~gr  112 (139)
T d1u6fa1          41 VLRNLMVNYIPTTVDEVQLRQLFERYG--------PIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNK  112 (139)
T ss_dssp             TTSEEEEESCSTTCCHHHHHHHHHHHS--------CEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhhc--------cccccccccccccccccceeeEEECCHHHHHHHHHHhCCCEECCE
Confidence            346899999999999999999999999        45779999887 68999999999999999999997 799999999


Q ss_pred             EEEEEecc
Q psy16116        515 YIELFRST  522 (612)
Q Consensus       515 ~IeV~~as  522 (612)
                      .|+|..+.
T Consensus       113 ~l~V~~a~  120 (139)
T d1u6fa1         113 RLKVALAA  120 (139)
T ss_dssp             EEEEEESS
T ss_pred             EEEEEEcC
Confidence            99999875

>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Sex-lethal protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.61  E-value=1.1e-15  Score=127.66  Aligned_cols=76  Identities=21%  Similarity=0.220  Sum_probs=68.1

Q ss_pred             ccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCC--
Q psy16116        438 QVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGI--  513 (612)
Q Consensus       438 ~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~igg--  513 (612)
                      ..+|||+|||+++++++|+++|+.||        .+..++|++|+ +|+++|||||+|.+.++|++||+ +|+..+.|  
T Consensus         6 ~t~lfV~nlp~~~te~~l~~~F~~~G--------~i~~~~~~~d~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~   77 (85)
T d1b7fa2           6 DTNLYVTNLPRTITDDQLDTIFGKYG--------SIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGS   77 (85)
T ss_dssp             TCEEEEESCCTTCCHHHHHHHHTSSS--------CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCS
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhhC--------CEeeeeeecccccccCceeEEEEECCHHHHHHHHHHHCCCEeCCCC
Confidence            35699999999999999999999999        45779999986 79999999999999999999996 79988865  


Q ss_pred             EEEEEEec
Q psy16116        514 RYIELFRS  521 (612)
Q Consensus       514 R~IeV~~a  521 (612)
                      |.|.|..+
T Consensus        78 ~~l~V~~A   85 (85)
T d1b7fa2          78 QPLSVRLA   85 (85)
T ss_dssp             SCCEEEEC
T ss_pred             eEEEEEEC
Confidence            88998764

>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Eukaryotic translation initiation factor 4B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=8.1e-16  Score=132.82  Aligned_cols=78  Identities=23%  Similarity=0.353  Sum_probs=68.5

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC--CCCceeEEEEEeCCHHHHHHHHHhCCcccCCE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP--DGKATGDAFVLFEKEEEADKALSKHKESIGIR  514 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~--~GrskG~AFV~F~s~edA~kAL~~~~~~iggR  514 (612)
                      ..++|||+|||++++++||++||+.||+         ..++++.+.  +|+++|||||+|.+.++|++|+++|+..|+||
T Consensus        14 p~~~v~V~nLp~~~te~~l~~~f~~~g~---------~~~~~~~~~~~~g~~~g~afV~f~~~e~a~~~~~~~~~~~~gr   84 (104)
T d1wi8a_          14 PPYTAFLGNLPYDVTEESIKEFFRGLNI---------SAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNK   84 (104)
T ss_dssp             SCEEEEEESCCSSCCHHHHHHHTTTSCE---------EEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTE
T ss_pred             CCCEEEEeCCCCcCCHHHHHHHHHHhcc---------ccceeeeeeccCCCcceeeeEEECCHHHHHHHHHcCCCEECCE
Confidence            4578999999999999999999999982         246666553  68999999999999999999999999999999


Q ss_pred             EEEEEecch
Q psy16116        515 YIELFRSTT  523 (612)
Q Consensus       515 ~IeV~~as~  523 (612)
                      .|+|..+..
T Consensus        85 ~l~V~~a~~   93 (104)
T d1wi8a_          85 RIRVDVADQ   93 (104)
T ss_dssp             ECEEEECCC
T ss_pred             EEEEEECCC
Confidence            999988753

>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=7.5e-16  Score=129.78  Aligned_cols=77  Identities=22%  Similarity=0.187  Sum_probs=68.9

Q ss_pred             ccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEEE
Q psy16116        438 QVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRYI  516 (612)
Q Consensus       438 ~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~I  516 (612)
                      ..+|||+|||+++++++|+++|+.||        .+..++|+.+.. .++|||||+|.+.++|++||+ +|+..++||.|
T Consensus         8 ~~~l~V~nLp~~~t~~~l~~~F~~~G--------~v~~~~i~~~~~-~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~i   78 (89)
T d1cvja2           8 VGNIFIKNLDKSIDNKALYDTFSAFG--------NILSCKVVCDEN-GSKGYGFVHFETQEAAERAIEKMNGMLLNDRKV   78 (89)
T ss_dssp             TTEEEEESCCSSCCHHHHHHHHHTTS--------CEEEEEECCBTT-BCCSCEEEEESCHHHHHHHTTSSSEEEETTEEE
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcC--------CceEEEEEeecC-CCcceeEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence            35699999999999999999999999        456789988764 478999999999999999996 79999999999


Q ss_pred             EEEecch
Q psy16116        517 ELFRSTT  523 (612)
Q Consensus       517 eV~~as~  523 (612)
                      .|..+..
T Consensus        79 ~V~~a~~   85 (89)
T d1cvja2          79 FVGRFKS   85 (89)
T ss_dssp             EEEECCC
T ss_pred             EEEECCC
Confidence            9998754

>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hu antigen D (Hud)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1.6e-15  Score=126.83  Aligned_cols=75  Identities=20%  Similarity=0.224  Sum_probs=67.1

Q ss_pred             cEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCE--
Q psy16116        439 VIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIR--  514 (612)
Q Consensus       439 ~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR--  514 (612)
                      .+|||+|||+++|++||+++|+.||        .+.+++|+.|+ +|+++|||||+|.+.++|++|++ +|+..++||  
T Consensus         7 ~~lfV~nLp~~~te~~L~~~F~~~G--------~v~~v~i~~d~~~g~~kg~afV~f~~~~~a~~Ai~~lng~~~~G~~~   78 (85)
T d1fxla2           7 ANLYVSGLPKTMTQKELEQLFSQYG--------RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATE   78 (85)
T ss_dssp             CEEEEESCCTTCCHHHHHHHHGGGS--------CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSS
T ss_pred             CEEEEeCCCCCCCHHHHHHHHHHhC--------CccccccccccccccCCCeeEEEEcCHHHHHHHHHHhCCCEeCCCCE
Confidence            5699999999999999999999999        45679999987 69999999999999999999996 799999874  


Q ss_pred             EEEEEec
Q psy16116        515 YIELFRS  521 (612)
Q Consensus       515 ~IeV~~a  521 (612)
                      .|.|..+
T Consensus        79 ~i~V~~A   85 (85)
T d1fxla2          79 PITVKFA   85 (85)
T ss_dssp             CCEEEEC
T ss_pred             EEEEEeC
Confidence            4888653

>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolysin TIAR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=3e-15  Score=126.23  Aligned_cols=78  Identities=15%  Similarity=0.161  Sum_probs=69.5

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRY  515 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~  515 (612)
                      ..++|||+|||+++++++|+++|+.||        .+..|+|+.|..+ .+|||||+|.+.++|++|++ +|+..++||.
T Consensus         7 ~~~tl~V~nLp~~~te~~l~~~F~~~G--------~i~~v~i~~d~~~-~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~   77 (90)
T d2cqia1           7 QPRTLYVGNLSRDVTEVLILQLFSQIG--------PCKSCKMITEHTS-NDPYCFVEFYEHRDAAAALAAMNGRKILGKE   77 (90)
T ss_dssp             CCCEEEEESCCTTCCHHHHHHHHHHHS--------CEEEEEEECCCCS-SCCEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHhcC--------CceeeeeecccCc-cceeeEEEECCHHHHHHHHHHcCCCEECCEE
Confidence            456899999999999999999999999        4567999888654 48999999999999999996 7999999999


Q ss_pred             EEEEecch
Q psy16116        516 IELFRSTT  523 (612)
Q Consensus       516 IeV~~as~  523 (612)
                      |+|..+.+
T Consensus        78 i~v~~a~~   85 (90)
T d2cqia1          78 VKVNWATT   85 (90)
T ss_dssp             EEEEECCC
T ss_pred             EEEEEcCC
Confidence            99998753

>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein EWS
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=3e-15  Score=128.10  Aligned_cols=85  Identities=20%  Similarity=0.233  Sum_probs=70.8

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCC-CccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCC
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTE-NSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGI  513 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi-~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~igg  513 (612)
                      ...+|||+|||+++|++||+++|+.||. ..+.+. ....+.+..|. +|+++|||||+|.+.++|++||+ +|+..++|
T Consensus         7 ~~~~i~V~nLp~~~te~~l~~~F~~~G~i~~~~~~-~~~~~~~~~d~~~~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g   85 (101)
T d2cpea1           7 DNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRT-GQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQG   85 (101)
T ss_dssp             CCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSS-CCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETT
T ss_pred             CCCEEEEECCCCcCCHHHHHHHHHHCceEEEeeec-ccceeEEeeccccccccceeeEEecCHHHHHHHHHHhCCCEECC
Confidence            4568999999999999999999999991 111121 23456777776 69999999999999999999996 79999999


Q ss_pred             EEEEEEecc
Q psy16116        514 RYIELFRST  522 (612)
Q Consensus       514 R~IeV~~as  522 (612)
                      |.|.|..+.
T Consensus        86 r~i~V~~a~   94 (101)
T d2cpea1          86 SKLKVSLAR   94 (101)
T ss_dssp             EECEEECSS
T ss_pred             EEEEEEEcC
Confidence            999999875

>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Pre-mRNA branch site protein p14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=5.2e-15  Score=129.57  Aligned_cols=78  Identities=22%  Similarity=0.324  Sum_probs=69.0

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRY  515 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~  515 (612)
                      .+++|||+|||+++++++|+++|+.||        .+..|++..  +|+++|||||+|.+.++|.+|++ +|+..|+||.
T Consensus         6 ~~r~l~V~nLp~~~te~~l~~~F~~~G--------~v~~i~~~~--~~~~kG~afV~f~~~~~A~~Ai~~l~g~~~~gr~   75 (114)
T d2f9da1           6 VNRILYIRNLPYKITAEEMYDIFGKYG--------PIRQIRVGN--TPETRGTAYVVYEDIFDAKNACDHLSGFNVCNRY   75 (114)
T ss_dssp             CCSEEEEESCCTTCCHHHHHHHHHTTS--------CEEEEEEEC--STTTTTEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHhhcC--------CeEeecccc--cCCcCCeEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence            357899999999999999999999999        345688764  56789999999999999999995 8999999999


Q ss_pred             EEEEecchH
Q psy16116        516 IELFRSTTA  524 (612)
Q Consensus       516 IeV~~as~~  524 (612)
                      |.|..+...
T Consensus        76 l~V~~a~~~   84 (114)
T d2f9da1          76 LVVLYYNAN   84 (114)
T ss_dssp             CEEEECCHH
T ss_pred             EEEEEcCCC
Confidence            999987643

>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 28
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.56  E-value=2.4e-15  Score=127.85  Aligned_cols=79  Identities=19%  Similarity=0.232  Sum_probs=68.4

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hC------C
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KH------K  508 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~------~  508 (612)
                      +.++|||+|||+++|+++|+++|+.||        .+..+.+..+. .|+++|||||+|.+.++|++||+ ++      +
T Consensus         7 ~~~tlfV~nLp~~~te~~l~~~f~~~G--------~v~~~~~~~~~~~~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g   78 (98)
T d1x4ha1           7 EGKTVFIRNLSFDSEEEALGEVLQQFG--------DLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGG   78 (98)
T ss_dssp             CCCCEEEESCCTTCCHHHHHHHHHTTS--------CEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCC
T ss_pred             CCCEEEEcCCCCcCCHHHHHHHHhccc--------cceeeeeccccccccccceEEEEEcCHHHHHHHHHHcccccccCC
Confidence            346799999999999999999999999        34568887776 68899999999999999999997 33      6


Q ss_pred             cccCCEEEEEEecch
Q psy16116        509 ESIGIRYIELFRSTT  523 (612)
Q Consensus       509 ~~iggR~IeV~~as~  523 (612)
                      ..++||.|.|..+..
T Consensus        79 ~~~~gr~l~v~~a~~   93 (98)
T d1x4ha1          79 LKLDGRQLKVDLAVT   93 (98)
T ss_dssp             EESSSCEEEEECCCC
T ss_pred             cEECCEEEEEEECCC
Confidence            778999999988753

>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif, single-stranded-interacting protein 1, RBMS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding motif, single-stranded-interacting protein 1, RBMS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=1.9e-15  Score=130.25  Aligned_cols=77  Identities=10%  Similarity=0.133  Sum_probs=69.1

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRY  515 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~  515 (612)
                      ..++|||+|||+++++++|+++|+.||        .+..+++..+.+|+++|||||+|.+.++|++|++ +||..|.||.
T Consensus        17 ~~~~lfV~nLp~~~te~~L~~~F~~~G--------~i~~~~~~~~~~~~~~g~afV~f~~~~~A~~Ai~~lng~~i~gr~   88 (101)
T d1x5oa1          17 DPTNLYISNLPLSMDEQELENMLKPFG--------QVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPP   88 (101)
T ss_dssp             CTTEEEEESCCTTCCHHHHHHTTTTTS--------CEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCT
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHhhcc--------cccceeeecccccccccceeEEeCCHHHHHHHHHHhCCCEECCcC
Confidence            346799999999999999999999999        4467888888899999999999999999999996 7999999998


Q ss_pred             EEEEec
Q psy16116        516 IELFRS  521 (612)
Q Consensus       516 IeV~~a  521 (612)
                      +.|..+
T Consensus        89 ~~v~~~   94 (101)
T d1x5oa1          89 GVSAPT   94 (101)
T ss_dssp             TSCCCS
T ss_pred             CccCCC
Confidence            777544

>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif, single-stranded-interacting protein 2, RBMS2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding motif, single-stranded-interacting protein 2, RBMS2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=4.4e-15  Score=119.79  Aligned_cols=68  Identities=18%  Similarity=0.250  Sum_probs=62.0

Q ss_pred             EEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEEE
Q psy16116        441 IRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIRYI  516 (612)
Q Consensus       441 VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~I  516 (612)
                      |||+|||+++|+++|+++|+.||        .+..+++..++ +|+++|||||+|.+.++|++|++ +|+..++||.+
T Consensus         1 lyV~nLp~~~te~~l~~~F~~~G--------~v~~~~~~~~~~~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~Gr~~   70 (72)
T d1x4ea1           1 LYIRGLQPGTTDQDLVKLCQPYG--------KIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMA   70 (72)
T ss_dssp             EEEESCCTTCCHHHHHTTSTTTS--------CEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESC
T ss_pred             CEEeCCCCcCCHHHHHHHHhhhc--------cccccccccccccccccceeEEEECCHHHHHHHHHHhCCCEECCEEC
Confidence            79999999999999999999999        44668888876 68999999999999999999996 79999999865

>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 41, RBM41
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=4.2e-15  Score=127.51  Aligned_cols=79  Identities=16%  Similarity=0.239  Sum_probs=69.5

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-hCCcccCCE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP-DGKATGDAFVLFEKEEEADKALS-KHKESIGIR  514 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~-~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR  514 (612)
                      .+.+|||+|||.++++++|+++|+.||    .|    ..+.+..+. +|+++|||||+|.+.++|++||+ +|+..++||
T Consensus        17 ps~tl~V~nLp~~~t~~~l~~~f~~~G----~v----~~~~~~~~~~~g~~~g~~fV~f~~~~~A~~Ai~~l~g~~~~g~   88 (102)
T d2cpxa1          17 PNKVLYLKNLSPRVTERDLVSLFARFQ----EK----KGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGK   88 (102)
T ss_dssp             CCSEEEEECCCTTCCHHHHHHHTHHHH----HS----SSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHhhcc----ce----eeEEeecccccccccccceEEeccHHHHHHHHHHhCCCEECCE
Confidence            457899999999999999999999999    33    346666654 79999999999999999999996 799999999


Q ss_pred             EEEEEecch
Q psy16116        515 YIELFRSTT  523 (612)
Q Consensus       515 ~IeV~~as~  523 (612)
                      .|.|..+..
T Consensus        89 ~l~V~~ak~   97 (102)
T d2cpxa1          89 ILVIEFGKN   97 (102)
T ss_dssp             BCEEEECCC
T ss_pred             EEEEEeCCC
Confidence            999998754

>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolin
species: Golden hamster (Mesocricetus auratus) [TaxId: 10036]

Probab=99.48  E-value=2.3e-14  Score=122.09  Aligned_cols=75  Identities=27%  Similarity=0.444  Sum_probs=65.2

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRY  515 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~  515 (612)
                      ...+|||+|||++++++||+++|+.+|    .|    ..++    .+|+++|||||+|.+.++|++|++ +|+..|+||.
T Consensus        15 ~~~~l~V~nL~~~~te~~l~~~F~~~g----~v----~~~~----~~~~~~~~afV~f~~~~~A~~A~~~l~~~~~~gr~   82 (96)
T d1fjca_          15 AARTLLAKNLSFNITEDELKEVFEDAL----EI----RLVS----QDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRS   82 (96)
T ss_dssp             GGGEEEEESCCSSCCHHHHHHHHCSEE----EE----CCEE----ETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcc----cc----eeee----ecCccccEEEEEeCCHHHHHHHHHHcCCCEECCEE
Confidence            457899999999999999999999999    22    2222    378999999999999999999996 7999999999


Q ss_pred             EEEEecch
Q psy16116        516 IELFRSTT  523 (612)
Q Consensus       516 IeV~~as~  523 (612)
                      |.|..+.+
T Consensus        83 i~V~~a~~   90 (96)
T d1fjca_          83 VSLYYTGE   90 (96)
T ss_dssp             EEEEECSS
T ss_pred             EEEEEeCC
Confidence            99998753

>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 1, SFRS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=5.1e-14  Score=119.71  Aligned_cols=76  Identities=17%  Similarity=0.132  Sum_probs=65.4

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRY  515 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~  515 (612)
                      ..++|||+|||++++++||+++|+.||        .+..+.+.  .++.++|||||+|.+.++|++||+ +|+..++||.
T Consensus        13 ~~~~l~V~nLp~~~t~~~l~~~F~~~G--------~v~~~~~~--~~~~~~g~afV~f~~~e~a~~Ai~~l~g~~~~g~~   82 (95)
T d1x4aa1          13 NDCRIYVGNLPPDIRTKDIEDVFYKYG--------AIRDIDLK--NRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYR   82 (95)
T ss_dssp             CSSEEEEESCCTTCCHHHHHHHHGGGS--------CEEEEEEC--CSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHhcCC--------ceEEEEec--ccccccceEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence            456799999999999999999999999        33445554  345678999999999999999996 7999999999


Q ss_pred             EEEEecc
Q psy16116        516 IELFRST  522 (612)
Q Consensus       516 IeV~~as  522 (612)
                      |.|..+.
T Consensus        83 l~V~~a~   89 (95)
T d1x4aa1          83 LRVEFPR   89 (95)
T ss_dssp             CEEECCC
T ss_pred             EEEEecc
Confidence            9998754

>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein H'
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=1.1e-14  Score=125.58  Aligned_cols=79  Identities=23%  Similarity=0.286  Sum_probs=72.2

Q ss_pred             cccceecCCCHHHHHhhHhhcccccCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccCccc
Q psy16116        339 ALCPLVQNIWLSLLLNTIPGYEQVLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGED  417 (612)
Q Consensus       339 ~l~vlV~nLp~~~~e~~fkeff~~~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~~~e  417 (612)
                      ..||+|+|||+++++++|++||..+++..|+++++.+|+++|||||+|.+.++|++||++|++.|+||.|+|..++..+
T Consensus        15 ~~~v~v~nLp~~~te~dl~~~F~~~~~~~v~~~~~~~g~~~G~afVeF~~~~~a~~Al~~~~~~i~gR~I~V~~s~~~~   93 (102)
T d1weza_          15 GHCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNSTAG   93 (102)
T ss_dssp             SCEEEEESCCTTCCHHHHHHSSCSCCCSEEEEEESSSSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEEECCCC
T ss_pred             CCEEEEeCCCCcCCHHHHHHHHhccCcceeeeEEecCCcceEEEEEEECCHHHHHHHHHcCCCEECCEEEEEEEcCCCC
Confidence            3478899999999999999999887788899999999999999999999999999999999999999999998887654

>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: E3 ubiquitin protein ligase CNOT4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.48  E-value=1.7e-14  Score=121.60  Aligned_cols=73  Identities=15%  Similarity=0.204  Sum_probs=64.1

Q ss_pred             cEEEEeCCCCCCCHHHH---HHHHhcCCCCccccccCceeEEEeeCC-CC---CceeEEEEEeCCHHHHHHHHH-hCCcc
Q psy16116        439 VIIRMRGLPYECTAKQV---IDFFEAGTENSCNVMDGEEGVLFVKKP-DG---KATGDAFVLFEKEEEADKALS-KHKES  510 (612)
Q Consensus       439 ~~VfV~nLP~s~te~dL---refF~~~Gi~~~~Ivd~v~~I~i~~d~-~G---rskG~AFV~F~s~edA~kAL~-~~~~~  510 (612)
                      .+|||+|||++++++||   +++|++||        .+..|.|+.|+ ++   ..+|||||+|.+.++|.+|++ +|+..
T Consensus         9 n~vyV~nLp~~~t~~~l~~~~e~F~~~G--------~I~~v~i~~~~~~~~~~~~~g~aFV~f~~~~~A~~Ai~~lng~~   80 (89)
T d2cpia1           9 NLVFVVGLSQRLADPEVLKRPEYFGKFG--------KIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV   80 (89)
T ss_dssp             SCEEEEEECTTTCCHHHHHSTTTTTTTS--------CEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEE
T ss_pred             CEEEEECCCCccCHHHHHHHHHHhcccC--------CceEEEEeeccCcCCCCCcceEEEEecccchhHHHHHHHhCCCE
Confidence            46999999999999999   77899999        45779999876 33   346999999999999999996 89999


Q ss_pred             cCCEEEEEE
Q psy16116        511 IGIRYIELF  519 (612)
Q Consensus       511 iggR~IeV~  519 (612)
                      ++||.|+|.
T Consensus        81 ~~gr~lkvS   89 (89)
T d2cpia1          81 VDGRTLKAS   89 (89)
T ss_dssp             ETTEEEEEE
T ss_pred             ECCEEEEEC
Confidence            999999884

>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein H'
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=1.9e-14  Score=124.46  Aligned_cols=85  Identities=28%  Similarity=0.373  Sum_probs=71.3

Q ss_pred             CCCcccceecCCCHHHHHhhHhhcccccC-e-eeEEEeeCCCCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEecc
Q psy16116        336 NPVALCPLVQNIWLSLLLNTIPGYEQVLG-L-GGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKA  413 (612)
Q Consensus       336 ~~~~l~vlV~nLp~~~~e~~fkeff~~~~-v-~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s  413 (612)
                      ...+.+|+|+|||++.++++|++||...+ + ..|.++.+.+|+++|||||+|+++++|++||++|++.|+||.|+|..+
T Consensus        12 ~~~~~~v~v~nLP~~~te~dI~~~F~~~g~v~~~v~~~~~~~~~~kG~afV~F~~~e~a~~a~~~~~~~i~gR~i~V~~~   91 (104)
T d1wg5a_          12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKS   91 (104)
T ss_dssp             CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEEE
T ss_pred             CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCcceEEEEEeCCHHHHHHHHhhCCCEEcceEEEEEEC
Confidence            34455788999999998888888887644 3 446666777899999999999999999999999999999999999999


Q ss_pred             Cccchhh
Q psy16116        414 NGEDFIN  420 (612)
Q Consensus       414 ~~~e~~~  420 (612)
                      +..++..
T Consensus        92 ~~~~~~~   98 (104)
T d1wg5a_          92 SRAEVRT   98 (104)
T ss_dssp             CTTTSCC
T ss_pred             CHHHhcc
Confidence            8876644

>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.47  E-value=2.9e-14  Score=123.75  Aligned_cols=74  Identities=20%  Similarity=0.128  Sum_probs=64.8

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRY  515 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~  515 (612)
                      ..++|||+|||+++++++|+++|+.||        .+..|.|.     +++|||||+|.+.++|++||+ +|+..|.||.
T Consensus         9 ~~~~l~V~nLp~~~t~~~L~~~F~~fG--------~I~~v~l~-----~~kg~afV~f~~~~~A~~A~~~lng~~~~gr~   75 (111)
T d1whxa_           9 SKTVILAKNLPAGTLAAEIQETFSRFG--------SLGRVLLP-----EGGITAIVEFLEPLEARKAFRHLAYSKFHHVP   75 (111)
T ss_dssp             EEEEEEEESCCTTCCHHHHHHHHHTTS--------CEEEEECC-----SSSSCEEEEESCHHHHHHHHHHHTTCBSSSSB
T ss_pred             CCCEEEEECCCCCCCHHHHHhhhhccC--------CccEEEee-----ccCceEEEEEcCHHHHHHHHHHHcCCccCCCe
Confidence            347899999999999999999999999        34556663     567999999999999999996 7999999999


Q ss_pred             EEEEecch
Q psy16116        516 IELFRSTT  523 (612)
Q Consensus       516 IeV~~as~  523 (612)
                      |.|..+..
T Consensus        76 l~v~~a~~   83 (111)
T d1whxa_          76 LYLEWAPI   83 (111)
T ss_dssp             CEEEEEET
T ss_pred             EEEEECCC
Confidence            99987743

>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: TAR DNA-binding protein 43, TDP-43
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=1.7e-14  Score=121.21  Aligned_cols=72  Identities=15%  Similarity=0.110  Sum_probs=62.6

Q ss_pred             ccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCcccCCEEEE
Q psy16116        438 QVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALSKHKESIGIRYIE  517 (612)
Q Consensus       438 ~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~~~~~~iggR~Ie  517 (612)
                      ..+|||+|||+++||+||+++|+.||    .|    ..|++.    ++++|||||+|.+.++|++||. +++.|+||.|.
T Consensus         5 s~~lfV~nLp~~~te~~L~~~F~~~G----~v----~~v~~~----~~~~gfafV~f~~~~~a~~a~~-~~~~i~g~~l~   71 (88)
T d1wf0a_           5 SSGVFVGRCTGDMTEDELREFFSQYG----DV----MDVFIP----KPFRAFAFVTFADDQIAQSLCG-EDLIIKGISVH   71 (88)
T ss_dssp             CCEEEEESCCSSSCHHHHHHHSTTTS----CC----CEEECC----SSCCSCCEEECSCHHHHHHTTT-CEEEETTEEEE
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHcC----Cc----eEEEEe----eccCceEEEEECCHHHHHHHHh-CCCEECCEEeE
Confidence            46799999999999999999999999    44    346553    4578999999999999999995 78899999999


Q ss_pred             EEecc
Q psy16116        518 LFRST  522 (612)
Q Consensus       518 V~~as  522 (612)
                      |..+.
T Consensus        72 v~~a~   76 (88)
T d1wf0a_          72 ISNAE   76 (88)
T ss_dssp             EECCC
T ss_pred             EEeCC
Confidence            98764

>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: APOBEC1 stimulating protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=5.3e-14  Score=117.28  Aligned_cols=72  Identities=19%  Similarity=0.140  Sum_probs=62.7

Q ss_pred             ccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEEE
Q psy16116        438 QVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRYI  516 (612)
Q Consensus       438 ~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~I  516 (612)
                      ..+|||+|||++++++||+++|+.+|    .|    ..+.+     ++++|||||+|.+.++|.+|+. +|+..|+||.|
T Consensus         8 ~k~l~V~nLp~~~te~~l~~~F~~~g----~i----~~~~~-----~~~rg~afV~f~~~~~A~~Ai~~l~~~~i~g~~i   74 (86)
T d2cpda1           8 VKILYVRNLMLSTSEEMIEKEFNNIK----PG----AVERV-----KKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPI   74 (86)
T ss_dssp             CCEEEEESCCTTCCHHHHHHHHHTTS----TT----CEEEE-----EECSSEEEEEESSHHHHHHHHHHHSSEEETTEEE
T ss_pred             CCEEEEcCCCCCCCHHHHHHhhcccc----ee----eeEEE-----ccccEEEEEEeCCHHHHHHHHHHcCCCEECCEEE
Confidence            36799999999999999999999999    22    33444     3578999999999999999996 79999999999


Q ss_pred             EEEecc
Q psy16116        517 ELFRST  522 (612)
Q Consensus       517 eV~~as  522 (612)
                      .|..+.
T Consensus        75 ~V~~ak   80 (86)
T d2cpda1          75 EVTLAK   80 (86)
T ss_dssp             EEECCC
T ss_pred             EEEecc
Confidence            998764

>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hypothetical protein FLJ20273
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=4.2e-14  Score=120.40  Aligned_cols=77  Identities=18%  Similarity=0.160  Sum_probs=66.6

Q ss_pred             cEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC--CCCceeEEEEEeCCHHHHHHHHH-hC--CcccCC
Q psy16116        439 VIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP--DGKATGDAFVLFEKEEEADKALS-KH--KESIGI  513 (612)
Q Consensus       439 ~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~--~GrskG~AFV~F~s~edA~kAL~-~~--~~~igg  513 (612)
                      ++|||+|||.++++++|+++|+.+|    .   .+++|+++.|.  .|+++|||||+|.+.++|.+|++ ++  +..++|
T Consensus         2 ~rLyV~nLp~~~te~~l~~~f~~~g----~---~i~~v~~~~~~~~~~~~rg~aFV~F~~~~~A~~Ai~~l~~~~~~~~g   74 (96)
T d2disa1           2 CRLFIGGIPKMKKREEILEEIAKVT----E---GVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG   74 (96)
T ss_dssp             EEEEEECCCTTSCHHHHHHHHHHHS----T---TEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTT
T ss_pred             CEEEEcCCCCcCCHHHHHHHHHHhC----C---cceEEEEeeeccccccCCCeEEEEEcCHHHHHHHHHHHcCCCeEECC
Confidence            4699999999999999999999999    2   25678988875  58899999999999999999996 43  456689


Q ss_pred             EEEEEEecc
Q psy16116        514 RYIELFRST  522 (612)
Q Consensus       514 R~IeV~~as  522 (612)
                      |.|.|..+.
T Consensus        75 ~~i~V~~A~   83 (96)
T d2disa1          75 HQIAVDWAE   83 (96)
T ss_dssp             BCCEEEESC
T ss_pred             EEEEEEEcC
Confidence            999999875

>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=1.2e-13  Score=115.66  Aligned_cols=75  Identities=16%  Similarity=0.160  Sum_probs=62.9

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCccc-CCE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESI-GIR  514 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~i-ggR  514 (612)
                      .+.+|||+|||+++++++|+++|+.||    .|    ..+.+.   .++++|||||+|.+.++|.+|+. +|+..+ +||
T Consensus         9 Ps~tL~V~NLp~~~te~~l~~~F~~~G----~v----~~~~~~---~~~~~~~afV~f~~~~~A~~A~~~l~~~~i~~g~   77 (88)
T d2adca2           9 PSATLHLSNIPPSVSEEDLKVLFSSNG----GV----VKGFKF---FQKDRKMALIQMGSVEEAVQALIDLHNHDLGENH   77 (88)
T ss_dssp             SCSEEEEECCCTTCCHHHHHHHHHTTS----CC----EEEEEE---CSSSTTCEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred             CCCEEEEECCCCCCCHHHHHHHhhccC----CE----EEEEEe---eecccceeEEEECCHHHHHHHHHhccCCEecCCC
Confidence            356899999999999999999999999    33    334443   34567999999999999999995 798887 589


Q ss_pred             EEEEEecc
Q psy16116        515 YIELFRST  522 (612)
Q Consensus       515 ~IeV~~as  522 (612)
                      .|+|..+.
T Consensus        78 ~l~v~~sk   85 (88)
T d2adca2          78 HLRVSFSK   85 (88)
T ss_dssp             BCEEEECS
T ss_pred             EEEEEeCC
Confidence            99998764

>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolysin TIAR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=9.2e-14  Score=118.72  Aligned_cols=73  Identities=15%  Similarity=0.173  Sum_probs=65.3

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRY  515 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~  515 (612)
                      ...+|||+|||.++++++|+++|+.||        .+.+|+|+.|     +|||||+|.+.++|++|++ +|+..|+||.
T Consensus        17 ~~~~l~v~nL~~~~te~~L~~~F~~fG--------~i~~v~i~~~-----kg~afV~f~~~~~A~~Ai~~l~~~~i~g~~   83 (96)
T d1x4ga1          17 KNCTVYCGGIASGLTDQLMRQTFSPFG--------QIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTIEGHV   83 (96)
T ss_dssp             SCCEEEEECCSSCCCHHHHHHHHHHHS--------CEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred             CCCEEEEcCCCCCCCHHHHHHHHHHhC--------CceEEEEEec-----ceEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence            346899999999999999999999999        4567888854     7999999999999999996 7999999999


Q ss_pred             EEEEecc
Q psy16116        516 IELFRST  522 (612)
Q Consensus       516 IeV~~as  522 (612)
                      |+|..+.
T Consensus        84 l~v~~ak   90 (96)
T d1x4ga1          84 VKCYWGK   90 (96)
T ss_dssp             CEEECCC
T ss_pred             EEEEEcC
Confidence            9998764

>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein KIAA1579
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=4.9e-14  Score=118.52  Aligned_cols=71  Identities=18%  Similarity=0.202  Sum_probs=61.8

Q ss_pred             ccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEEE
Q psy16116        438 QVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRYI  516 (612)
Q Consensus       438 ~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~I  516 (612)
                      ..+|||+|||++++++||+++|+.||+   .      .+.+     ++++|||||+|.+.++|++|++ +|+..++||.|
T Consensus         5 s~~i~V~nLp~~~t~~~l~~lF~~~G~---~------~~~~-----~~~kg~afV~f~~~~~A~~Ai~~ln~~~~~G~~l   70 (88)
T d1wg1a_           5 SSGILVKNLPQDSNCQEVHDLLKDYDL---K------YCYV-----DRNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDL   70 (88)
T ss_dssp             CCCEEEESCCSSCCHHHHHHHTCSSCC---C------CEEE-----EGGGTEEEECCSCHHHHHHHHHHHTTEEETTEEE
T ss_pred             CCEEEEeCCCCccChHHHHHHHHhcCc---e------eeee-----eccCCceEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence            356999999999999999999999993   1      1332     4678999999999999999995 79999999999


Q ss_pred             EEEecc
Q psy16116        517 ELFRST  522 (612)
Q Consensus       517 eV~~as  522 (612)
                      .|..+.
T Consensus        71 ~V~~a~   76 (88)
T d1wg1a_          71 IVQLQP   76 (88)
T ss_dssp             EEEECC
T ss_pred             EEEEcC
Confidence            998864

>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1, Raver-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Ribonucleoprotein PTB-binding 1, Raver-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.44  E-value=6.6e-14  Score=114.37  Aligned_cols=69  Identities=28%  Similarity=0.355  Sum_probs=60.7

Q ss_pred             EEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEEEEEE
Q psy16116        441 IRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRYIELF  519 (612)
Q Consensus       441 VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~IeV~  519 (612)
                      |||+|||++++++||+++|++||+         ..++     .++++|||||+|.+.++|++|++ +|+..++||.|.|.
T Consensus         1 i~V~nLp~~~t~~~l~~~F~~~g~---------~~~~-----~~~~~g~afv~f~~~~~A~~Ai~~ln~~~~~g~~l~V~   66 (75)
T d1wi6a1           1 ILIRGLPGDVTNQEVHDLLSDYEL---------KYCF-----VDKYKGTAFVTLLNGEQAEAAINTFHQSRLRERELSVQ   66 (75)
T ss_dssp             EEEECCCTTCCHHHHHHHTTTSCE---------EEEE-----EETTTTEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred             CEEeCCCCcCCHHHHHHHHhcccc---------ccee-----ecccceeEEEEECCHHHHHHHHHHhCCccCCCCEEEEE
Confidence            799999999999999999999992         1122     25788999999999999999995 89999999999999


Q ss_pred             ecch
Q psy16116        520 RSTT  523 (612)
Q Consensus       520 ~as~  523 (612)
                      .+..
T Consensus        67 ~a~~   70 (75)
T d1wi6a1          67 LQPT   70 (75)
T ss_dssp             ECCS
T ss_pred             EeCC
Confidence            8754

>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing octamer-binding protein, NonO {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Non-POU domain-containing octamer-binding protein, NonO
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.44  E-value=8.1e-14  Score=116.66  Aligned_cols=73  Identities=16%  Similarity=0.168  Sum_probs=64.9

Q ss_pred             ccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEEE
Q psy16116        438 QVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRYI  516 (612)
Q Consensus       438 ~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~I  516 (612)
                      ..+|||+|||++++++||+++|+.||        .+.+|++..     .+|||||+|.+.++|++|++ +|+..++||.|
T Consensus         8 ~~~l~V~nLp~~~~~~~l~~~F~~~G--------~i~~i~~~~-----~k~~afV~f~~~~~A~~A~~~l~g~~i~g~~l   74 (86)
T d2cpja1           8 RSRLFVGNLPPDITEEEMRKLFEKYG--------KAGEVFIHK-----DKGFGFIRLETRTLAEIAKVELDNMPLRGKQL   74 (86)
T ss_dssp             TTEEEEESCCTTCCHHHHHHHTSTTC--------CCSEEEEET-----TTTEEEEECSSSHHHHHHHHHHTTCCBTTBCC
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHHhC--------CceEeeeec-----ccceEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence            35699999999999999999999999        345688873     46899999999999999997 79999999999


Q ss_pred             EEEecch
Q psy16116        517 ELFRSTT  523 (612)
Q Consensus       517 eV~~as~  523 (612)
                      .|..+..
T Consensus        75 ~V~~A~~   81 (86)
T d2cpja1          75 RVRFACH   81 (86)
T ss_dssp             EEEESSC
T ss_pred             EEEECCC
Confidence            9998753

>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: IGF-II mRNA-binding protein 2 isoform A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=5.5e-14  Score=116.04  Aligned_cols=71  Identities=17%  Similarity=0.167  Sum_probs=60.3

Q ss_pred             EEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCc-ccCCEEEE
Q psy16116        440 IIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKE-SIGIRYIE  517 (612)
Q Consensus       440 ~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~-~iggR~Ie  517 (612)
                      +|||+|||++++++||+++|++||    .|.    .+.+.     +++|||||+|.+.++|++|++ +|+. .++||.|.
T Consensus         3 ~l~V~nLp~~~te~~L~~~F~~~G----~i~----~~~~~-----~~rg~aFV~f~~~~~A~~Ai~~lng~~~~~G~~i~   69 (80)
T d2cqha1           3 KLYIGNLSPAVTADDLRQLFGDRK----LPL----AGQVL-----LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIME   69 (80)
T ss_dssp             CEEEECCCTTCCHHHHHHHHHHTT----CCC----SSCEE-----EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECE
T ss_pred             EEEEECCCCCCCHHHHHHHHHHhC----cEE----EeEEe-----cccceEEEEECCHHHHHHHHHHhCCCeEECCEEEE
Confidence            499999999999999999999999    232    23333     468999999999999999996 7886 59999999


Q ss_pred             EEecch
Q psy16116        518 LFRSTT  523 (612)
Q Consensus       518 V~~as~  523 (612)
                      |..+.+
T Consensus        70 V~~a~~   75 (80)
T d2cqha1          70 VDYSVS   75 (80)
T ss_dssp             EEECCC
T ss_pred             EEEcCC
Confidence            998754

>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1.3e-13  Score=119.36  Aligned_cols=73  Identities=15%  Similarity=0.150  Sum_probs=64.7

Q ss_pred             ccEEEEeCCCC-CCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEE
Q psy16116        438 QVIIRMRGLPY-ECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRY  515 (612)
Q Consensus       438 ~~~VfV~nLP~-s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~  515 (612)
                      ..+|||+|||+ .+++++|+++|+.||        .+..|+|+.+.    +|||||+|.+.++|.+||+ +|+..|+||.
T Consensus         2 ~~~l~V~nL~p~~~te~~L~~~F~~fG--------~I~~v~i~~~~----kg~afV~f~~~~~A~~ai~~lng~~l~g~~   69 (109)
T d2adca1           2 NSVLLVSNLNPERVTPQSLFILFGVYG--------DVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHGKP   69 (109)
T ss_dssp             CSEEEEESCCTTTCCHHHHHHHHHHHT--------CEEEEEECCTT----SCCEEEEESCHHHHHHHHHHHTTCBCSSSB
T ss_pred             CCEEEEeCCCcccCCHHHHHHHHhhcc--------ccceEEEEecc----cceEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence            35899999965 599999999999999        45779988763    7899999999999999996 7999999999


Q ss_pred             EEEEecc
Q psy16116        516 IELFRST  522 (612)
Q Consensus       516 IeV~~as  522 (612)
                      |.|..+.
T Consensus        70 l~v~~s~   76 (109)
T d2adca1          70 IRITLSK   76 (109)
T ss_dssp             CEEECCS
T ss_pred             EEEEECC
Confidence            9999864

>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicesomal U1A protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.41  E-value=2.4e-13  Score=112.71  Aligned_cols=74  Identities=20%  Similarity=0.194  Sum_probs=64.1

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCccc-CCE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESI-GIR  514 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~i-ggR  514 (612)
                      ++.+|||+|||+++++++|+++|+.||        .+..|+++.+    .+|||||+|.+.++|.+|++ +|+..+ +|+
T Consensus         7 P~~tl~V~nLp~~~t~~~l~~~f~~~G--------~i~~v~~~~~----~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~   74 (83)
T d2b0ga1           7 PNQILFLTNLPEETNEMMLSMLFNQFP--------GFKEVRLVPN----RHDIAFVEFTTELQSNAAKEALQGFKITPTH   74 (83)
T ss_dssp             CCSEEEEESCCTTCCHHHHHHHHTTST--------TEEEEEECTT----TCSCEEEEESSHHHHHHHHHHHTTCBSSTTC
T ss_pred             CCCEEEEECCCCCCCHHHHHhhhccCc--------cEEEeeeecc----cceeEEEecCCHHHHHHHHHHhCCcEeCCCc
Confidence            457899999999999999999999999        4567888643    46899999999999999997 688877 578


Q ss_pred             EEEEEecc
Q psy16116        515 YIELFRST  522 (612)
Q Consensus       515 ~IeV~~as  522 (612)
                      .|.|..+.
T Consensus        75 ~i~v~~ak   82 (83)
T d2b0ga1          75 AMKITFAK   82 (83)
T ss_dssp             BCEEEECC
T ss_pred             EEEEEEec
Confidence            89998764

>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Musashi-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.41  E-value=3.5e-14  Score=116.66  Aligned_cols=73  Identities=18%  Similarity=0.219  Sum_probs=58.9

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCC-CCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEecc
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAF-GRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKA  413 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~-GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s  413 (612)
                      +++|+|||++.++++|+++|.. +.+.+++|++|+. |+++|||||+|.++++|++||+++++.|+||.|+|..+
T Consensus         2 klfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~kG~aFV~f~~~~~a~~al~~~~~~i~Gr~i~V~~A   76 (77)
T d1uawa_           2 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA   76 (77)
T ss_dssp             CEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEEEC
T ss_pred             EEEEeCCCCcCCHHHHHHHHHHhCCcceeeeecccCCCCccceEEEEECCHHHHHHHHHcCCCEECCeEEEEEEC
Confidence            4456666666655555555544 4588999999875 99999999999999999999999999999999999654

>d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 1, SFRS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=3e-14  Score=119.42  Aligned_cols=69  Identities=14%  Similarity=0.097  Sum_probs=60.7

Q ss_pred             EEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEEEEE
Q psy16116        440 IIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRYIEL  518 (612)
Q Consensus       440 ~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~IeV  518 (612)
                      +|||+|||++++++||+++|++||        .+..+++..      +|||||+|.+.++|++||+ +|+..|+||.|.|
T Consensus         2 rvfV~nlp~~~~~~~l~~~F~~~G--------~v~~~~i~~------~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~i~v   67 (87)
T d3begb1           2 RVVVSGLPPSGSWQDLKDHMREAG--------DVCYADVYR------DGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGET   67 (87)
T ss_dssp             CEEEEECCSSCCTTHHHHHHGGGS--------CEEEEEECT------TSEEEEEESSHHHHHHHHHHHTTCBCCCTTSCC
T ss_pred             eEEEECCCCcCCHHHHHHHHhhhc--------ccccccccc------cceeeEEeCCHHHHHHHHHHhCCCEECCcEeEE
Confidence            499999999999999999999999        345677753      3899999999999999995 7999999999888


Q ss_pred             Eecc
Q psy16116        519 FRST  522 (612)
Q Consensus       519 ~~as  522 (612)
                      ..+.
T Consensus        68 ~~~~   71 (87)
T d3begb1          68 AYIR   71 (87)
T ss_dssp             CBCE
T ss_pred             eEEe
Confidence            6653

>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicesomal U1A protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=1e-13  Score=116.98  Aligned_cols=76  Identities=18%  Similarity=0.176  Sum_probs=64.9

Q ss_pred             ccEEEEeCCCCCCCHHHHHH----HHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccC
Q psy16116        438 QVIIRMRGLPYECTAKQVID----FFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIG  512 (612)
Q Consensus       438 ~~~VfV~nLP~s~te~dLre----fF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~ig  512 (612)
                      ..+|||+|||++++++||++    +|+.||    +    +.+|++.  ++|+++|||||+|.+.++|.+|++ +|+..++
T Consensus         3 ~~tl~V~nLp~~~t~~dl~~~l~~~f~~~G----~----i~~i~~~--~~~~~~g~afV~F~~~~~A~~A~~~~~~~~~~   72 (91)
T d1nu4a_           3 NHTIYINNLNEKIKKDELKKSLHAIFSRFG----Q----ILDILVS--RSLKMRGQAFVIFKEVSSATNALRSMQGFPFY   72 (91)
T ss_dssp             CSEEEEESCCTTSCHHHHHHHHHHHHGGGS----C----EEEEECC--HHHHHTTCEEEEESSHHHHHHHHHHHTTCEET
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHhcccc----c----ccceEEe--eeccCCCceEEEECCHHHHHHHHHHhCCCEEC
Confidence            46899999999999999975    689999    3    3455553  467889999999999999999996 7999999


Q ss_pred             CEEEEEEecch
Q psy16116        513 IRYIELFRSTT  523 (612)
Q Consensus       513 gR~IeV~~as~  523 (612)
                      ||.|.|..+..
T Consensus        73 g~~l~v~~ak~   83 (91)
T d1nu4a_          73 DKPMRIQYAKT   83 (91)
T ss_dssp             TEECEEEECSS
T ss_pred             CEEEEEEEeCC
Confidence            99999998853

>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=3.8e-15  Score=125.37  Aligned_cols=79  Identities=16%  Similarity=0.237  Sum_probs=62.6

Q ss_pred             cEEEEeCCCCCCCHHHHHHHHhcCCC-CccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCcccCCEEEE
Q psy16116        439 VIIRMRGLPYECTAKQVIDFFEAGTE-NSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALSKHKESIGIRYIE  517 (612)
Q Consensus       439 ~~VfV~nLP~s~te~dLrefF~~~Gi-~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~~~~~~iggR~Ie  517 (612)
                      ++|||+|||+++||+||+++|+.+|. ..+.+.   ....+.....++++|||||+|.+.|+|++|+++|+..+.||.|+
T Consensus         2 RrlyVgNLp~~~te~~l~~~F~~~g~~~~~~~~---~~~~~~~~~~~~~kg~afV~f~~~e~a~~a~~l~g~~~~Gr~l~   78 (90)
T d1u2fa_           2 RRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQA---PGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLK   78 (90)
T ss_dssp             CEEEECSCCTTCCTTHHHHHHHHHHTTTTSCCS---SSCSEEECCEETTTTEEEEEESSCTTTTTGGGGSSCCSSSSCCC
T ss_pred             CEEEEcCCCCccchHHHHHHHHhhCcEEEEEEe---ccceeeecccCCCceEEEEEeCCHHHHHHHHhhCCcEECCEEEE
Confidence            46999999999999999999999981 111111   00112233468899999999999999999999999999999999


Q ss_pred             EEe
Q psy16116        518 LFR  520 (612)
Q Consensus       518 V~~  520 (612)
                      |..
T Consensus        79 V~r   81 (90)
T d1u2fa_          79 IRR   81 (90)
T ss_dssp             CBC
T ss_pred             ECC
Confidence            853

>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins C1/C2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoproteins C1/C2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=2.1e-13  Score=117.02  Aligned_cols=70  Identities=17%  Similarity=0.174  Sum_probs=61.9

Q ss_pred             ccEEEEeCCC-CCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEE
Q psy16116        438 QVIIRMRGLP-YECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRY  515 (612)
Q Consensus       438 ~~~VfV~nLP-~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~  515 (612)
                      ..+|||+||| +.++++||+++|++||        .+.+|+|       ++|||||+|.+.++|++||+ +|+..|+||.
T Consensus        15 ~~~lfV~nL~~~~~~~~~L~~~F~~~G--------~i~~~~i-------~rg~aFV~f~~~~~A~~Ai~~lng~~~~g~~   79 (98)
T d1wf2a_          15 NSRVFIGNLNTLVVKKSDVEAIFSKYG--------KIVGCSV-------HKGFAFVQYVNERNARAAVAGEDGRMIAGQV   79 (98)
T ss_dssp             CCCEEEEEECTTTCCHHHHHHSSTTSS--------CEEEEEE-------ETEEEEEEESSHHHHHHHHHTTTTCEETTEE
T ss_pred             CcEEEEeCCCcccCCHHHHHHHHhhcC--------CEEEEEE-------eCCeEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence            4569999996 6889999999999999        3456776       57999999999999999997 7999999999


Q ss_pred             EEEEecc
Q psy16116        516 IELFRST  522 (612)
Q Consensus       516 IeV~~as  522 (612)
                      |.|..+.
T Consensus        80 l~V~~a~   86 (98)
T d1wf2a_          80 LDINLAA   86 (98)
T ss_dssp             CEEEETT
T ss_pred             EEEEECC
Confidence            9999864

>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein d0
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=1.1e-13  Score=112.84  Aligned_cols=72  Identities=18%  Similarity=0.286  Sum_probs=60.1

Q ss_pred             ceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCC-CCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEecc
Q psy16116        342 PLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAF-GRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKA  413 (612)
Q Consensus       342 vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~-GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s  413 (612)
                      ++|+|||++.++++|+++|.. +.+.+++++.++. |+++|||||+|.+.++|++||+.+++.|+||.|+|.++
T Consensus         2 lfV~nl~~~~te~~l~~~F~~~G~i~~~~i~~d~~t~~~kg~afV~f~~~~~a~~Al~~~~~~l~Gr~i~V~rA   75 (75)
T d1hd0a_           2 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRA   75 (75)
T ss_dssp             EEEECCCTTCCHHHHHHHHHTTSCEEEEECCCBTTTTBCCSEEEEEESSHHHHHHHHHTCCCCBTTBCCEECCC
T ss_pred             EEEeCCCCcCCHHHHHHHHHhhccccccccccCCCCCCcCceEEEEECCHHHHHHHHhcCCCEECCCEEEeeEC
Confidence            557777777777777766654 5588999998864 89999999999999999999999999999999999653

>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Negative elongation factor E, NELF-E
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=2.1e-13  Score=112.16  Aligned_cols=72  Identities=18%  Similarity=0.157  Sum_probs=62.9

Q ss_pred             ccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEEE
Q psy16116        438 QVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRYI  516 (612)
Q Consensus       438 ~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~I  516 (612)
                      +.+|||+||+  +|+++|+++|+.||    +|    .+|++.     +.+|||||+|.+.++|.+|++ +|+..++||.|
T Consensus         5 ~~ti~V~~~~--~te~~L~~~F~~~G----~I----~~v~~~-----~~~~~afV~f~~~~~A~~Ai~~lng~~~~g~~l   69 (79)
T d2bz2a1           5 GNTLYVYGED--MTPTLLRGAFSPFG----NI----IDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQVESVQL   69 (79)
T ss_dssp             CCEEEEECSS--CCHHHHHHHHSTTC----CC----SCEEEE-----TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBC
T ss_pred             CCEEEEECCC--CCHHHHHHHHhccC----cc----ceeeec-----cCCCEEEEEEcccHHHHHHHHHhCCCEECCEEE
Confidence            4689999986  89999999999999    44    458875     457899999999999999995 79999999999


Q ss_pred             EEEecchH
Q psy16116        517 ELFRSTTA  524 (612)
Q Consensus       517 eV~~as~~  524 (612)
                      .|..+.++
T Consensus        70 ~V~~a~~~   77 (79)
T d2bz2a1          70 KVNIARKQ   77 (79)
T ss_dssp             EEEECCSS
T ss_pred             EEEEecCC
Confidence            99988643

>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=2.4e-13  Score=118.15  Aligned_cols=75  Identities=15%  Similarity=0.076  Sum_probs=64.5

Q ss_pred             ccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCccc--CCE
Q psy16116        438 QVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESI--GIR  514 (612)
Q Consensus       438 ~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~i--ggR  514 (612)
                      ..+|||+|||+++|+++|+++|+.||        .+..|.+..+   +++|||||+|.+.++|++|++ +|+..|  +++
T Consensus         7 ~~~v~V~NL~~~vte~~L~~~F~~~G--------~i~~~~i~~~---~~~g~aFV~f~~~e~A~~Ai~~ln~~~l~~~~~   75 (108)
T d2adba1           7 VLRIIVENLFYPVTLDVLHQIFSKFG--------TVLKIITFTK---NNQFQALLQYADPVSAQHAKLSLDGQNIYNACC   75 (108)
T ss_dssp             EEEEESCSCCSTTHHHHHHHHHTTTS--------CEEEEEEEEE---TTEEEEEEEESCHHHHHHHHHHHHSCCSSTTCC
T ss_pred             eEEEEEeCcCCCCCHHHHHHHHccCC--------cEEEEEEEee---CCCCeEEEEECCHHHHHHHHHHHCCCEeccCCc
Confidence            45799999999999999999999999        4567888765   468999999999999999996 788877  578


Q ss_pred             EEEEEecch
Q psy16116        515 YIELFRSTT  523 (612)
Q Consensus       515 ~IeV~~as~  523 (612)
                      .|.|..+..
T Consensus        76 ~l~v~~s~~   84 (108)
T d2adba1          76 TLRIDFSKL   84 (108)
T ss_dssp             CCEEEECSS
T ss_pred             EEEEEecCC
Confidence            899887653

>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein 2, PTBP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein 2, PTBP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=5.1e-13  Score=111.78  Aligned_cols=76  Identities=22%  Similarity=0.233  Sum_probs=65.8

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH---hCCcccCC
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS---KHKESIGI  513 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~---~~~~~igg  513 (612)
                      .+.+|||+|||+++++++|+++|+.||        .+..+++.     +.+|+|||+|.+.++|++|++   .++..++|
T Consensus         7 Ps~~l~V~nLp~~~t~~~L~~~f~~~G--------~i~~v~~~-----~~~~~afV~f~~~e~A~~a~~~~~~~~~~~~g   73 (88)
T d2cq1a1           7 PSRVLHIRKLPGEVTETEVIALGLPFG--------KVTNILML-----KGKNQAFLELATEEAAITMVNYYSAVTPHLRN   73 (88)
T ss_dssp             CCSEEEEESCCTTCCHHHHHHTTTTTS--------CEEEEEEE-----TTTTEEEEEESSHHHHHHHHHHHHHSCCEETT
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHhccc--------cccccccc-----ccceEEEEEeCCHHHHHHHHHHHccCCCccCC
Confidence            567899999999999999999999999        44567776     446899999999999999996   37789999


Q ss_pred             EEEEEEecchHH
Q psy16116        514 RYIELFRSTTAE  525 (612)
Q Consensus       514 R~IeV~~as~~e  525 (612)
                      |.|.|..++.++
T Consensus        74 ~~l~v~~sk~~~   85 (88)
T d2cq1a1          74 QPIYIQYSNHKE   85 (88)
T ss_dssp             EECEEEECSCSS
T ss_pred             CEEEEEECCCCC
Confidence            999999886543

>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=1.2e-13  Score=118.83  Aligned_cols=82  Identities=18%  Similarity=0.271  Sum_probs=69.8

Q ss_pred             CcccceecCCCHHHHHhhHhhcccccC-e-eeEEEeeCCCCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccCc
Q psy16116        338 VALCPLVQNIWLSLLLNTIPGYEQVLG-L-GGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANG  415 (612)
Q Consensus       338 ~~l~vlV~nLp~~~~e~~fkeff~~~~-v-~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~~  415 (612)
                      .+.||+|+|||++.++++|++||...+ + ..+.+..+.+|+++|||||+|.+.++|++||++|+..|+||.|.|..++.
T Consensus         7 ~~~~v~v~nLp~~~t~~~l~~~F~~~g~i~~~~~~~~~~~g~~~G~afV~F~s~~~a~~Al~~n~~~i~gr~i~V~~~~~   86 (103)
T d2cpya1           7 AKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHVVTL   86 (103)
T ss_dssp             CCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEEEECH
T ss_pred             CceEEEEeCCCCCCCHHHHhhhhcccceEEEEEEEEeCCCCCcCccEEEEECCHHHHHHHHhcCCCeECCcEEEEEECCH
Confidence            356888999999998888888887633 4 35777778899999999999999999999999999999999999988876


Q ss_pred             cchh
Q psy16116        416 EDFI  419 (612)
Q Consensus       416 ~e~~  419 (612)
                      .+..
T Consensus        87 ~~~~   90 (103)
T d2cpya1          87 EDMR   90 (103)
T ss_dssp             HHHH
T ss_pred             HHhh
Confidence            5543

>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=4.7e-13  Score=111.40  Aligned_cols=72  Identities=17%  Similarity=0.198  Sum_probs=57.2

Q ss_pred             ceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCC-CCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEecc
Q psy16116        342 PLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAF-GRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKA  413 (612)
Q Consensus       342 vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~-GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s  413 (612)
                      +||+|||++.++++|+++|.. +.+.+|+|++|+. |+++|||||+|.+.++|++||+.+++.|+||.|+|.++
T Consensus         9 lfV~nlp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~a~~ai~~~~~~i~Gr~i~V~~A   82 (84)
T d1l3ka1           9 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRA   82 (84)
T ss_dssp             EEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEEC
T ss_pred             EEEECCCCCCCHHHHHHHHHhhccccceeecccccCCCcccEEEEEEcCHHHHHHHHHhCCCEECCEEEEEEee
Confidence            335555555555555554443 4588999999875 99999999999999999999999999999999999765

>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9 (SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 9 (SFRS9)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.35  E-value=3.6e-13  Score=115.48  Aligned_cols=72  Identities=14%  Similarity=0.085  Sum_probs=63.3

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEE
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRY  515 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~  515 (612)
                      ..++|||+|||++++++||+++|++||        .+..+.|.      ++|||||+|.+.++|++||+ +|+..|+||.
T Consensus        14 ~~~~i~V~Nlp~~~~~~~L~~~F~~~G--------~v~~~~i~------~~g~afV~f~~~~~a~~Ai~~lng~~~~g~~   79 (98)
T d1wg4a_          14 SDFRVLVSGLPPSGSWQDLKDHMREAG--------DVCYADVQ------KDGMGMVEYLRKEDMEYALRKLDDTKFRSHE   79 (98)
T ss_dssp             CSCEEEEECCCSSCCHHHHHHHHTTSS--------CEEEEEEE------TTTEEEEEESSHHHHHHHHHHHSSEEEECTT
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHhhc--------cccccccc------ccceEEEEECCHHHHHHHHHHhCCCEeCCeE
Confidence            457899999999999999999999999        34567764      45899999999999999996 7999999999


Q ss_pred             EEEEecc
Q psy16116        516 IELFRST  522 (612)
Q Consensus       516 IeV~~as  522 (612)
                      |.|..+.
T Consensus        80 i~v~~~~   86 (98)
T d1wg4a_          80 GETSYIR   86 (98)
T ss_dssp             SCEEEEE
T ss_pred             EEEEEEe
Confidence            9998764

>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear factor Aly
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.35  E-value=3.9e-13  Score=110.18  Aligned_cols=73  Identities=22%  Similarity=0.146  Sum_probs=59.6

Q ss_pred             ceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccC
Q psy16116        342 PLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKAN  414 (612)
Q Consensus       342 vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~  414 (612)
                      ++|+|||.+..+++|+++|.. +.+.++++..+++|+++|||||+|.+.++|++|++ +|+..++||.|.|..++
T Consensus         3 l~V~nLp~~~~~~~l~~~F~~~G~v~~~~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~l~V~~a~   77 (78)
T d1no8a_           3 LLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT   77 (78)
T ss_dssp             EEEESCCTTCCHHHHHHHHHHHSCEEEEEESCSSCCCSCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred             EEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeeccccceeEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence            446666666666666555544 45899999999999999999999999999999997 79999999999997653

>d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=1.4e-13  Score=120.55  Aligned_cols=80  Identities=19%  Similarity=0.387  Sum_probs=68.0

Q ss_pred             ccceecCCCHHHHHhhHhhcccccC-e-eeEEEeeCCCCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccCccc
Q psy16116        340 LCPLVQNIWLSLLLNTIPGYEQVLG-L-GGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGED  417 (612)
Q Consensus       340 l~vlV~nLp~~~~e~~fkeff~~~~-v-~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~~~e  417 (612)
                      .|++|+|||++.++++|++||...+ + ..+.+..+.+|+++|||||+|.+.++|++||++|+..|+||+|+|+.++.++
T Consensus        19 ~~i~v~nLp~~~t~~di~~~F~~~g~~~~~~~~~~~~~g~~~G~afVeF~~~e~a~~al~~~~~~i~gR~i~V~~~~~~~   98 (112)
T d1wela1          19 FCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKKG   98 (112)
T ss_dssp             CEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEEECHHH
T ss_pred             eEEEEecCCCcCcHHHHhhHHhhccccccceeeecCcccceeeEEEEEECCHHHHHHHHHcCCCcCCCEEEEEEEcChHH
Confidence            3677888999888888888887633 3 4466777889999999999999999999999999999999999999988766


Q ss_pred             hh
Q psy16116        418 FI  419 (612)
Q Consensus       418 ~~  419 (612)
                      +.
T Consensus        99 ~~  100 (112)
T d1wela1          99 ML  100 (112)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein D0 (AUF1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=1.5e-13  Score=112.36  Aligned_cols=72  Identities=15%  Similarity=0.179  Sum_probs=58.5

Q ss_pred             ceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEecc
Q psy16116        342 PLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKA  413 (612)
Q Consensus       342 vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s  413 (612)
                      ++|+|||++.++++|+++|.. +.+.+|+|+.++ +|+++|||||+|.+.++|++||+.+++.|+|+.|+|..+
T Consensus         2 lfVgnLp~~~te~~l~~~F~~~G~I~~v~i~~d~~t~~~rG~~FV~f~~~~~a~~al~~~~~~i~g~~i~vk~A   75 (75)
T d1x0fa1           2 IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA   75 (75)
T ss_dssp             EEEESCCSSCCHHHHHHHHHHHSCEEEEECCCCTTTCCTTCCEEEEESSSHHHHHHTTCSSCCBTTBCCEEECC
T ss_pred             EEEcCCCCCCCHHHHHHHHHHhCCcccccccccccccccccEEEEEECCHHHHHHHHhhCCCEECCEEeEEEEC
Confidence            456666666666666665554 458899999886 489999999999999999999998889999999998653

>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA binding protein 23
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=5.2e-13  Score=115.17  Aligned_cols=74  Identities=12%  Similarity=0.080  Sum_probs=61.7

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCC-CCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccC
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAF-GRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKAN  414 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~-GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~  414 (612)
                      +|+|+||+++.++++|+++|.. +.+.+|+|+++++ |+++|||||+|.+.|+|++||++|+..|+||.|.|..+.
T Consensus        20 tifV~nL~~~~te~~l~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~a~~A~~l~g~~~~G~~l~V~~a~   95 (101)
T d2cq4a1          20 TVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQ   95 (101)
T ss_dssp             EEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEEEHH
T ss_pred             EEEEECCCCCCCHHHHHHHHcCCCeEEEEEeeecCCCccccceEEEEECCHHHHHHHHHHCCCEECCEEEEEEECC
Confidence            3456677777666666666655 4588999999864 899999999999999999999999999999999997654

>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=7.2e-13  Score=108.29  Aligned_cols=73  Identities=21%  Similarity=0.210  Sum_probs=60.4

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEecc
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKA  413 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s  413 (612)
                      +++|+|||++.++++|+++|.. +.+..+.+..++ +|+++|||||+|.+.|++++|++++++.|+||.|+|.++
T Consensus         4 ~lfV~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~~~~al~~~~~~l~Gr~i~V~~A   78 (79)
T d1l3ka2           4 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA   78 (79)
T ss_dssp             EEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHCSCCEETTEECEEEEC
T ss_pred             EEEECCCCCcCCHHHHHHHHHHhccccccccccCCCCcccccEEEEEEcCHHHHHHHHHhCCCEECCEEEEEEEC
Confidence            4557777777777777766665 558888888876 478899999999999999999999999999999999754

>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: TAR DNA-binding protein 43, TDP-43
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=3.7e-12  Score=107.45  Aligned_cols=74  Identities=19%  Similarity=0.213  Sum_probs=57.3

Q ss_pred             ceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCC-CCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccCcc
Q psy16116        342 PLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAF-GRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGE  416 (612)
Q Consensus       342 vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~-GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~~~  416 (612)
                      ++|+|||++.++++|+++|.. +.+.+|+|++|+. |+++|||||+|.+.++|++||+ +++.|+||.|.|..+..+
T Consensus        11 lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~srG~aFV~f~~~~~a~~al~-~~~~l~Gr~i~v~~a~~k   86 (90)
T d2cqga1          11 LIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS-QRHMIDGRWCDCKLPNSK   86 (90)
T ss_dssp             EEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH-SCEEETTEEEEEECCCTT
T ss_pred             EEEECCCCCCCHHHHHHHHHhhcccceeeeccCCCCcccCCEEEEEECCHHHHHHHHh-cCCccCCEEeEEEeCCCC
Confidence            335555555555555555544 4589999999874 9999999999999999999998 456899999999877653

>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Lupus LA protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=7.4e-13  Score=110.46  Aligned_cols=72  Identities=8%  Similarity=0.016  Sum_probs=59.1

Q ss_pred             ceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEecc
Q psy16116        342 PLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKA  413 (612)
Q Consensus       342 vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s  413 (612)
                      |+|+|||.+.++++|+++|.. +.+.+|+|.++++|+++|||||+|.+.++|++||++++..++||.|.|...
T Consensus         9 vfV~nlp~~~te~~l~~~F~~~G~v~~v~l~~~~~~~~kG~afV~f~~~e~a~~al~~~~~~~~g~~l~v~~~   81 (85)
T d1zh5a2           9 VYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFK   81 (85)
T ss_dssp             EEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHTCCCCEETTEECEEEEG
T ss_pred             EEEECCCCCCCHHHHHHHHHHhcccccceeeeeccCCcceEEEEEEcCHHHHHHHHHHCCCEECCEEEEEEEc
Confidence            446666666666666655554 458899999999999999999999999999999999999999999999653

>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.30  E-value=8.1e-13  Score=107.76  Aligned_cols=71  Identities=18%  Similarity=0.050  Sum_probs=56.0

Q ss_pred             ceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEecc
Q psy16116        342 PLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKA  413 (612)
Q Consensus       342 vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s  413 (612)
                      |+|+|||++..+++|+++|.. +.+.+|++..+++++ +|||||+|+++++|++||+++++.|+||.|.|..+
T Consensus         3 v~V~nlp~~~t~~~l~~~F~~~G~I~~v~~~~~~~~~-~~~afV~F~~~~~a~~Al~~~~~~i~g~~i~V~~~   74 (75)
T d2ghpa2           3 VLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKN-FRFARIEFARYDGALAAITKTHKVVGQNEIIVSHL   74 (75)
T ss_dssp             EEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSS-SEEEEEEESSHHHHHHHHTTTTCEETTEECEEEEC
T ss_pred             EEEECCCCCCCHHHHHHHHhcCCceEEEEEEeecccc-ceEEEEEEcchHHhHHHHHhcCcEECCEEEEEEEC
Confidence            445556655555555555443 458899999987764 58999999999999999999999999999999765

>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor 3B subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=1.1e-12  Score=111.09  Aligned_cols=76  Identities=17%  Similarity=0.109  Sum_probs=59.9

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCcc
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGE  416 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~  416 (612)
                      +++|+|||++.++++|+++|.. +.+.+|++++++ +|+++|||||+|.+.++|++|++ +|+..|+||.|+|..+..+
T Consensus        11 tlfV~nLp~~~t~~~l~~~F~~~G~v~~v~~~~d~~tg~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~A~~~   89 (93)
T d1x5ua1          11 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKASAH   89 (93)
T ss_dssp             EEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEETTTT
T ss_pred             EEEEeCCCCcCCHHHHHHHHHHhCCccccceeecccccccccceEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcCCC
Confidence            3446666666555555555544 458899998876 58999999999999999999996 7999999999999887653

>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor 10 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Arginine/serine-rich splicing factor 10
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=1.4e-12  Score=107.74  Aligned_cols=70  Identities=20%  Similarity=0.165  Sum_probs=59.0

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCC-CCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEE
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAF-GRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEV  410 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~-GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV  410 (612)
                      +++|+|||++.++++|+++|.. +.+.+|+|+++++ |+++|||||+|.+.++|++|++ +|+..++||.|+|
T Consensus        11 ~l~V~nL~~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gr~i~V   83 (83)
T d2cqca1          11 CLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV   83 (83)
T ss_dssp             CEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred             EEEEeCCCCCCCHHHHHHHHHHhCCCccccccccccccccccceEEEECCHHHHHHHHHHcCCCEECCEEeEC
Confidence            5667777777777777766654 4588999998875 8899999999999999999996 8999999999987

>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Putative RNA-binding protein 15B, Rbm15b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.29  E-value=2.5e-12  Score=109.59  Aligned_cols=73  Identities=15%  Similarity=0.129  Sum_probs=62.6

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCC--
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGI--  513 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~igg--  513 (612)
                      ..++|||+|||+++++++|+++|+.||        .+..+++.     +.+|||||+|.+.++|++|++ +|+..|+|  
T Consensus        16 Ps~tl~V~nLp~~~t~~~l~~~f~~~G--------~i~~~~~~-----~~~~~afV~f~~~~~A~~A~~~l~~~~i~g~~   82 (97)
T d1whya_          16 PTTRLWVGGLGPNTSLAALAREFDRFG--------SIRTIDHV-----KGDSFAYIQYESLDAAQAACAKMRGFPLGGPD   82 (97)
T ss_dssp             CCSCEEEECCCSSCCHHHHHHHHHTTS--------CEEEEEEC-----SSSCCEEEEESSHHHHHHHHHHHTTCBCSSSS
T ss_pred             CCCEEEEcCCCCCCCHHHHHHHHHhhc--------ccceEeee-----ccccEEEeccCCHHHHHHHHHHhCCCEeCCCc
Confidence            457899999999999999999999999        44567775     347899999999999999996 69999876  


Q ss_pred             EEEEEEecc
Q psy16116        514 RYIELFRST  522 (612)
Q Consensus       514 R~IeV~~as  522 (612)
                      |.|+|..+.
T Consensus        83 ~~l~v~~ak   91 (97)
T d1whya_          83 RRLRVDFAK   91 (97)
T ss_dssp             CBCEEEECC
T ss_pred             eEEEEEeCC
Confidence            578888764

>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein L-like {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein L-like
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.29  E-value=2.4e-12  Score=111.01  Aligned_cols=75  Identities=17%  Similarity=0.147  Sum_probs=64.8

Q ss_pred             cccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-h--CCcccCC
Q psy16116        437 AQVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-K--HKESIGI  513 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~--~~~~igg  513 (612)
                      ...+|||+|||++++|+||+++|+.||        .+..+++.     +.||+|||+|.+.++|++|++ +  ++..++|
T Consensus        14 ps~~l~v~nlp~~~te~~l~~~F~~fG--------~I~~~~~~-----~~k~~AfV~f~~~e~A~~ai~~~~~~~~~~~g   80 (104)
T d1wexa_          14 VSPVVHVRGLCESVVEADLVEALEKFG--------TICYVMMM-----PFKRQALVEFENIDSAKECVTFAADVPVYIAG   80 (104)
T ss_dssp             CCSEEEEESCCSSCCHHHHHHHHTTTS--------CEEEEEEE-----TTTTEEEEEESSHHHHHHHHHHHHHSCCBSSS
T ss_pred             CCCEEEEeCCCCCCCHHHHHHhhhhcc--------cceEEEEE-----ecceeEEEEeCCHHHHHHHHHHHcCCCcEEee
Confidence            467899999999999999999999999        44567775     467899999999999999996 3  5678999


Q ss_pred             EEEEEEecchH
Q psy16116        514 RYIELFRSTTA  524 (612)
Q Consensus       514 R~IeV~~as~~  524 (612)
                      |.|+|..++.+
T Consensus        81 ~~l~v~~s~~~   91 (104)
T d1wexa_          81 QQAFFNYSTSK   91 (104)
T ss_dssp             SBCEEEECSSS
T ss_pred             EEEEEEEcCCC
Confidence            99999987643

>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.29  E-value=2.1e-12  Score=110.25  Aligned_cols=77  Identities=16%  Similarity=0.085  Sum_probs=63.5

Q ss_pred             ccceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCcc
Q psy16116        340 LCPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGE  416 (612)
Q Consensus       340 l~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~  416 (612)
                      .+++|+|||++.++++|+++|.. +.+.+|+|++++ +|+++|||||+|.+.++|++||+ +|+..|+||.|.|..+..+
T Consensus         9 ~~lfV~nL~~~~t~~~l~~~F~~~g~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~A~~~l~g~~~~gr~i~V~~a~~~   88 (99)
T d1whwa_           9 GRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIK   88 (99)
T ss_dssp             EEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECCCC
T ss_pred             CEEEEECCCCcCCHHHHHHHHHhcCCceeeeecccccccccCcceEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence            35667777777777777766654 458899998876 58999999999999999999996 7999999999999887654

>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins A2/B1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoproteins A2/B1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=9.8e-13  Score=113.85  Aligned_cols=75  Identities=19%  Similarity=0.231  Sum_probs=59.8

Q ss_pred             ceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCC-CCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccCcc
Q psy16116        342 PLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAF-GRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGE  416 (612)
Q Consensus       342 vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~-GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~~~  416 (612)
                      |||+|||++.++++|+++|.. +.+.+++|..|+. ++++|||||+|.+.++|++||+++++.|+||.|.|.++..+
T Consensus        23 lfVgnLp~~~te~~L~~~F~~~G~i~~~~i~~d~~~~~~kg~aFV~f~~~~~a~~al~~~~~~l~G~~i~V~~a~~k   99 (103)
T d1x4ba1          23 LFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAR   99 (103)
T ss_dssp             EEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECCSSC
T ss_pred             EEEeCCCCcCCHHHHHHHHHhhCcccceeecccccCCCccCeEEEEECCHHHHHHHHHhCCCeECCEEEEEEECccc
Confidence            445566665555555555544 4588999988865 68999999999999999999999999999999999877653

>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Neural RNA-binding protein Musashi-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.29  E-value=6.4e-13  Score=107.29  Aligned_cols=72  Identities=18%  Similarity=0.264  Sum_probs=58.5

Q ss_pred             ceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCC-CCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEecc
Q psy16116        342 PLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAF-GRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKA  413 (612)
Q Consensus       342 vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~-GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s  413 (612)
                      ++|+|||++.++++|+++|.. +.+..+.++.++. |+++|||||+|.+.++|++||++|++.|+||.|+|.++
T Consensus         2 lfV~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~afV~F~~~~~a~~al~~~~~~l~gr~i~V~~A   75 (75)
T d2msta_           2 IFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA   75 (75)
T ss_dssp             EEEECCCSSCCHHHHHHHHHTTSCCSEECCBCCTTCTTSCCEEEEECSCHHHHHHHHHCSSCCBTTBCCEEEEC
T ss_pred             EEEeCCCCCCCHHHHHHHHHHhCCcceeeeeeeccccccCceeEEEECCHHHHHHHHhcCCCEECCeEEEEEEC
Confidence            456677776666666666654 3477888877764 88999999999999999999999999999999999753

>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=1.2e-12  Score=107.55  Aligned_cols=74  Identities=14%  Similarity=0.101  Sum_probs=60.8

Q ss_pred             ceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCC-CCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCc
Q psy16116        342 PLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAF-GRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANG  415 (612)
Q Consensus       342 vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~-GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~  415 (612)
                      ++|+|||++.++++|+++|.. +.+.+|+|++++. |+++|||||+|.+.++|++|++ +++..++||.|+|..+.+
T Consensus         3 lfV~nL~~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~aFV~f~~~~~a~~ai~~l~g~~~~gr~i~v~~a~~   79 (80)
T d1cvja1           3 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQR   79 (80)
T ss_dssp             EEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHTTSTTCEETTEECEEEECCC
T ss_pred             EEEeCCCCcCCHHHHHHHHHHhCCEeEEEEEecccccCCCCceEEEECCHHHHHHHHHHcCCCEECCEEEEEEEeCC
Confidence            456667766666666665554 4589999999875 8899999999999999999996 799999999999987753

>d1x4fa1 d.58.7.1 (A:8-106) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Matrin 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.28  E-value=1.3e-12  Score=112.10  Aligned_cols=74  Identities=18%  Similarity=0.224  Sum_probs=64.2

Q ss_pred             cccEEEEeCCCCC-CCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH---hCCcccC
Q psy16116        437 AQVIIRMRGLPYE-CTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS---KHKESIG  512 (612)
Q Consensus       437 ~~~~VfV~nLP~s-~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~---~~~~~ig  512 (612)
                      .+.+|||+|||++ +|+++|+++|+.||        .+.+|+++     +.+|+|||+|.+.++|.+|++   +++..++
T Consensus        17 ~~~~l~v~nLp~~~~te~~l~~~F~~fG--------~V~~v~~~-----~~k~~afV~f~~~~~A~~Ai~~~~~~~~~~~   83 (99)
T d1x4fa1          17 LGRVIHLSNLPHSGYSDSAVLKLAEPYG--------KIKNYILM-----RMKSQAFIEMETREDAMAMVDHCLKKALWFQ   83 (99)
T ss_dssp             CCCEEEEESCCCSSCCSHHHHTTTTTTS--------CCSEEEEE-----TTTTEEEEECSSHHHHHHHHHHHHHSCCCSS
T ss_pred             CCCEEEEeCCcCCccCHHHHHhhhcccc--------ceeEEEEe-----ecCCcEEEEecchHHHHHHHHHHhcCCceEC
Confidence            4578999999985 89999999999999        34568886     346899999999999999995   5888999


Q ss_pred             CEEEEEEecch
Q psy16116        513 IRYIELFRSTT  523 (612)
Q Consensus       513 gR~IeV~~as~  523 (612)
                      ||.|.|..+.+
T Consensus        84 gr~l~V~~s~~   94 (99)
T d1x4fa1          84 GRCVKVDLSEK   94 (99)
T ss_dssp             SSCCEEEEECS
T ss_pred             CEEEEEEEcCC
Confidence            99999998753

>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Sex-lethal protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.27  E-value=1.3e-12  Score=107.56  Aligned_cols=74  Identities=14%  Similarity=0.103  Sum_probs=60.2

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccC
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKAN  414 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~  414 (612)
                      +++|+|||.+.++++|+++|.. +.+.++++++++ +|+++|||||+|.+.++|++||+ +|+..++||.|.|..+.
T Consensus         4 ~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~ai~~lng~~~~g~~l~v~~a~   80 (82)
T d1b7fa1           4 NLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR   80 (82)
T ss_dssp             EEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHHhCCcceeeeeeecccCCccccceEEECCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence            3456666666666666666554 458899998875 58999999999999999999996 89999999999998764

>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolin
species: Golden hamster (Mesocricetus auratus) [TaxId: 10036]

Probab=99.27  E-value=3.5e-13  Score=113.98  Aligned_cols=74  Identities=14%  Similarity=0.056  Sum_probs=56.6

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccC
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKAN  414 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~  414 (612)
                      +++|+|||++.++++|+++|.. +.+.++.++.+.+|+++|||||+|.+.++|++||++|+..|+||.|+|..+.
T Consensus        15 ~ifV~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~g~~kg~afv~F~~~e~a~~Al~~~g~~~~g~~i~V~~ak   89 (91)
T d1fjeb1          15 NLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPK   89 (91)
T ss_dssp             EEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEECCC
T ss_pred             EEEEeCccCcchHHHHHHHHhcCCcEEEeeeeecCCCCccEEeEEeeCCHHHHHHHHhcCCcEECCEEEEEEecC
Confidence            3445555555544444444433 2366677777778999999999999999999999999999999999998765

>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.26  E-value=1.8e-12  Score=107.69  Aligned_cols=74  Identities=22%  Similarity=0.275  Sum_probs=61.3

Q ss_pred             cccceecCCCHHHHHhhHhhcccccC-e-eeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEec
Q psy16116        339 ALCPLVQNIWLSLLLNTIPGYEQVLG-L-GGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTK  412 (612)
Q Consensus       339 ~l~vlV~nLp~~~~e~~fkeff~~~~-v-~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~  412 (612)
                      ...++|+|||++..+++|+++|...+ + ..+.+..+.+|+++|+|||+|++.++|++||+ +|+..|+||.|+|..
T Consensus         9 ~~~l~v~nLp~~~~~~di~~~F~~~~~~~~~~~~~~~~~g~~~G~afV~f~~~e~a~~Ai~~l~~~~l~gr~i~v~l   85 (86)
T d2cqpa1           9 PTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL   85 (86)
T ss_dssp             SEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred             CCEEEEECCCCCCCHHHHHHHHhhcccceeEEEEEeCCCCCcceEEEEEEcCcHHHHHHHHHcCCCEECCEEEEEEE
Confidence            34567888888888888887776522 3 45778888899999999999999999999996 799999999999964

>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein UBP1
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.26  E-value=1.9e-11  Score=110.22  Aligned_cols=74  Identities=14%  Similarity=0.092  Sum_probs=58.2

Q ss_pred             eecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCC-CCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCcc
Q psy16116        343 LVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAF-GRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGE  416 (612)
Q Consensus       343 lV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~-GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~  416 (612)
                      +|+|||++.++++|+++|.. +.+.+|+|+.++. |+++|||||+|.+.++|++||+ +|+..|+||.|+|..+...
T Consensus        46 ~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~t~~~rg~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~a~~~  122 (139)
T d1u6fa1          46 MVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAASG  122 (139)
T ss_dssp             EEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEESSCC
T ss_pred             EEeCCCCCCCHHHHHHHHHhhccccccccccccccccccceeeEEECCHHHHHHHHHHhCCCEECCEEEEEEEcCCC
Confidence            35555555555555555443 3588999998864 8999999999999999999997 7999999999999887543

>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 8
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.25  E-value=3.4e-12  Score=106.84  Aligned_cols=75  Identities=17%  Similarity=0.061  Sum_probs=62.0

Q ss_pred             ccceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccC
Q psy16116        340 LCPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKAN  414 (612)
Q Consensus       340 l~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~  414 (612)
                      .+++|+|||.+.++++|+++|.. +.+.+|++++++ +|+++|||||+|.+.++|++|++ +|+..++||.|.|..+.
T Consensus         8 ~~l~V~nL~~~~t~~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~f~~~~~A~~A~~~lng~~l~g~~l~V~~a~   85 (88)
T d1rk8a_           8 WILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCF   85 (88)
T ss_dssp             EEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESE
T ss_pred             CEEEEeCCCCCCCHHHHHHHHHHcCCcccccccccccccccccceeEEECCHHHHHHHHHHcCCCEECCEEEEEEEec
Confidence            35667777777777777766654 458899999886 58999999999999999999996 79999999999997664

>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.25  E-value=3.5e-12  Score=108.11  Aligned_cols=76  Identities=25%  Similarity=0.215  Sum_probs=59.9

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC--CCCCcceEEEEeCCHHHHHHHHH-h-CCCccCceEEEEeccCc
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA--FGRRNGEAIVRFIDQEHRDMALK-R-HKHHIDKRYIEVTKANG  415 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~--~GrsrG~AFVeF~S~EdA~kAL~-~-ng~~IggR~IeV~~s~~  415 (612)
                      +++|+|||++..+++|+++|.. +.+.+|+|+++.  +|+++|||||+|.+.++|++||+ + |+..++||.|.|..+..
T Consensus        10 ~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~g~~rg~afV~f~~~~~A~~Ai~~l~~~~~~~Gr~l~V~~A~~   89 (94)
T d2cpha1          10 KILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWADS   89 (94)
T ss_dssp             CEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEEECCC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHHhCCceEEEEEeccccCCCcccEEEEEECCHHHHHHHHHHccCCcEECCEEEEEEEcCC
Confidence            4456666666666666655554 458899998764  58999999999999999999997 4 78899999999988765


Q ss_pred             c
Q psy16116        416 E  416 (612)
Q Consensus       416 ~  416 (612)
                      +
T Consensus        90 ~   90 (94)
T d2cpha1          90 E   90 (94)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Peptidyl-prolyl cis-trans isomerase E, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=1.9e-12  Score=108.57  Aligned_cols=75  Identities=16%  Similarity=0.057  Sum_probs=59.4

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCC-CCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCc
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAF-GRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANG  415 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~-GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~  415 (612)
                      +++|+|||++.++++|+++|.. +.+.+|++++++. |+++|||||+|.+.++|++|++ +|+..|+|+.|.|..+..
T Consensus         7 tlfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~~~~~kg~afV~f~~~~~A~~ai~~l~~~~i~g~~l~v~~a~p   84 (89)
T d2cqba1           7 VLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAKP   84 (89)
T ss_dssp             CEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred             EEEEeCCCCcCCHHHHHHHHhhCCeEEecccccccccccccceeEEEECCHHHHHHHHHHcCCCEECCEEEEEEEeCC
Confidence            3446666665555555555543 4588999998875 8999999999999999999996 799999999999987754

>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding region containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=2.9e-12  Score=110.41  Aligned_cols=74  Identities=18%  Similarity=0.114  Sum_probs=57.9

Q ss_pred             ceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCC-CCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccCc
Q psy16116        342 PLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAF-GRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANG  415 (612)
Q Consensus       342 vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~-GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~~  415 (612)
                      |+|+|||++.++++|+++|.. +.+.+|+|++++. |+++|||||+|.+.++|++||+..+..|+||.|.|..+..
T Consensus        13 lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~Gr~l~V~~a~~   88 (103)
T d2cqda1          13 IFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYL   88 (103)
T ss_dssp             EEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEECEEEESTT
T ss_pred             EEEeCCCCcCcHHHHHHHHhhcccccceeccccccccccCCeEEEEECCHHHHHHHHHHCCCcCCCEEEEEEEcCC
Confidence            445556655555555555544 4588999998875 8999999999999999999999766789999999976653

>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=2.2e-12  Score=107.47  Aligned_cols=74  Identities=15%  Similarity=0.134  Sum_probs=59.4

Q ss_pred             ceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCC-CCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCc
Q psy16116        342 PLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAF-GRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANG  415 (612)
Q Consensus       342 vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~-GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~  415 (612)
                      ++|+|||.+.++++|+++|.. +.+.+|+|++|+. |+++|||||+|.+.++|++|++ +|+..|+||.|.|..+..
T Consensus         4 lfV~nlp~~~te~~l~~~F~~~G~v~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~a~~~l~~~~l~g~~l~V~~A~~   80 (85)
T d2u2fa_           4 LFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASV   80 (85)
T ss_dssp             EEEETCCSSCCSHHHHHHHTSSSCEEEEEEECCCSSSCCCCEEEEEESSSHHHHHHHHTSSSCCCSSSCCEEEECCC
T ss_pred             EEEECCCCCCCHHHHHHHHHhcCccceEEeeccccccccceeEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCC
Confidence            445666665555555555544 4588999999875 9999999999999999999998 799999999999987754

>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.24  E-value=2.3e-12  Score=105.82  Aligned_cols=74  Identities=14%  Similarity=-0.003  Sum_probs=51.8

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeC-CCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccC
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLS-AFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKAN  414 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d-~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~  414 (612)
                      +++|+|||.+.++++|+++|.. +.+..++++.+ ..|+++|||||+|.+.++|++|++ +|+..++||.|.|..+.
T Consensus         3 tl~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~i~V~~a~   79 (81)
T d2ghpa1           3 TLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSN   79 (81)
T ss_dssp             EEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred             EEEEECCCCcCCHHHHHHHHHHhCcEEeeeeecccccccccceeEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence            4556666666666665555544 34555655554 468999999999999999999996 89999999999997764

>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Eukaryotic translation initiation factor 3 subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=5.5e-12  Score=105.88  Aligned_cols=75  Identities=16%  Similarity=0.101  Sum_probs=63.5

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCc
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANG  415 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~  415 (612)
                      +++|+|||.+.++++|+++|.. |.+..|+|+.++ +|+++|||||+|.+.++|++|++ +++..++||.|.|..+..
T Consensus        10 ~i~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~t~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~akp   87 (90)
T d2cq0a1          10 TIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAKP   87 (90)
T ss_dssp             EEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSC
T ss_pred             EEEEECCCCCCCHHHHHHHHHHhcccccccccccccccccccceeEEECCHHHHHHHHHHhCCCEECCEEEEEEeeeC
Confidence            5667778887777777777765 458899999986 48999999999999999999997 799999999999977654

>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Eukaryotic translation initiation factor 4B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=2.9e-12  Score=110.09  Aligned_cols=77  Identities=18%  Similarity=0.184  Sum_probs=65.4

Q ss_pred             ccceecCCCHHHHHhhHhhcccccCeeeEEEeeCC--CCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccCcc
Q psy16116        340 LCPLVQNIWLSLLLNTIPGYEQVLGLGGVALCLSA--FGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGE  416 (612)
Q Consensus       340 l~vlV~nLp~~~~e~~fkeff~~~~v~~V~ii~d~--~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~~~  416 (612)
                      .+|+|+|||++.++++|+++|...++.+++++.++  .|+++|||||+|.+.|+|++|+++|+..|+||.|+|..+..+
T Consensus        16 ~~v~V~nLp~~~te~~l~~~f~~~g~~~~~~~~~~~~~g~~~g~afV~f~~~e~a~~~~~~~~~~~~gr~l~V~~a~~~   94 (104)
T d1wi8a_          16 YTAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIRVDVADQA   94 (104)
T ss_dssp             EEEEEESCCSSCCHHHHHHHTTTSCEEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECEEEECCCC
T ss_pred             CEEEEeCCCCcCCHHHHHHHHHHhccccceeeeeeccCCCcceeeeEEECCHHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence            36778888888888888888877667778877664  588999999999999999999999999999999999877653

>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: CUG triplet repeat RNA-binding protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=3.9e-12  Score=109.42  Aligned_cols=76  Identities=5%  Similarity=-0.019  Sum_probs=60.5

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCcc
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGE  416 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~  416 (612)
                      +++|+|||++.++++|+++|.. +.+.++.++.++ +|+++|||||+|.+.++|++||+ +|+..|+||.|.|..+..+
T Consensus        20 ~l~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~g~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~~i~V~~a~~k   98 (102)
T d2cpza1          20 NLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSK   98 (102)
T ss_dssp             CEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECCCCS
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhhccccccceeeecccCCCccceEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEeCCC
Confidence            4556666666666666665554 457888888875 58999999999999999999995 8999999999999877543

>d1jmta_ d.58.7.3 (A:) U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Splicing factor U2AF subunits
domain: U2AF35 (35 KDa subunit)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=6.5e-13  Score=115.27  Aligned_cols=74  Identities=19%  Similarity=0.138  Sum_probs=67.8

Q ss_pred             EEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEEEEE
Q psy16116        440 IIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRYIEL  518 (612)
Q Consensus       440 ~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~IeV  518 (612)
                      .++|++++.+++|++|+++|++||        .+.+|+|+.+.+|+++|+|||+|.+.++|.+|++ +||..++||.|+|
T Consensus        29 ~~~v~~~~~~~~ed~l~e~f~k~G--------~I~~v~I~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lng~~~~gr~i~v  100 (104)
T d1jmta_          29 DVEMQEHYDEFFEEVFTEMEEKYG--------EVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHA  100 (104)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTC--------CEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCE
T ss_pred             hHHhhhhhhhhhHHHHHHHhccCC--------CEEEEEeecCCCCCEeeEEEEEEechhHHHHHHHHHCCCEECCEEEEE
Confidence            378889999999999999999999        4578999988899999999999999999999996 7999999999998


Q ss_pred             Eec
Q psy16116        519 FRS  521 (612)
Q Consensus       519 ~~a  521 (612)
                      ..+
T Consensus       101 ~~s  103 (104)
T d1jmta_         101 ELS  103 (104)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            764

>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hu antigen D (Hud)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=4.4e-12  Score=104.10  Aligned_cols=74  Identities=15%  Similarity=0.174  Sum_probs=60.4

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccC
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKAN  414 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~  414 (612)
                      +++|+|||.+.++++|+++|.. +.+.+|+++++. .|+++|||||+|.+.++|++|++ +|+..++||.|.|..+.
T Consensus         4 ~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~Ak   80 (82)
T d1fxla1           4 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR   80 (82)
T ss_dssp             EEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred             EEEEECCCCCCCHHHHHHHHHHhCCcccccceeeccCCCceeeEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence            3556777777666666666654 458899998875 58899999999999999999996 89999999999997654

>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleoporin 35
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.23  E-value=9.3e-12  Score=103.30  Aligned_cols=75  Identities=17%  Similarity=0.181  Sum_probs=62.7

Q ss_pred             ccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCcccCCEE-E
Q psy16116        438 QVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALSKHKESIGIRY-I  516 (612)
Q Consensus       438 ~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~~~~~~iggR~-I  516 (612)
                      +..|+|.|+|++++++.| ++|++||    +|    .++++     ++.+|||||+|++.++|++||++||..|+||. |
T Consensus         4 ~~wV~V~G~p~~~~~~il-~~F~~~G----~I----~~~~~-----~~~~~~~fV~f~~~~~A~~Al~~nG~~~~g~~~v   69 (81)
T d1wwha1           4 DTWVTVFGFPQASASYIL-LQFAQYG----NI----LKHVM-----SNTGNWMHIRYQSKLQARKALSKDGRIFGESIMI   69 (81)
T ss_dssp             GGEEEEECCCGGGHHHHH-HHHHTTS----CE----EEEEE-----CSSSSEEEEEESSHHHHHHHHTTTTCEETTTEEC
T ss_pred             ccEEEEECCChHHHHHHH-HHHHhhh----hh----heEEe-----cCCCCEEEEEEcccHHHHHHHhcCCCeECCcEEE
Confidence            356999999999987655 5799999    44    34554     46689999999999999999999999999985 6


Q ss_pred             EEEecchHHH
Q psy16116        517 ELFRSTTAEV  526 (612)
Q Consensus       517 eV~~as~~e~  526 (612)
                      .|.++..+++
T Consensus        70 gV~~~~~k~~   79 (81)
T d1wwha1          70 GVKPCIDKNV   79 (81)
T ss_dssp             EEEECCCHHH
T ss_pred             EEEeCCChhh
Confidence            8999987765

>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Cold-inducible RNA-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=4.4e-12  Score=106.12  Aligned_cols=74  Identities=16%  Similarity=0.143  Sum_probs=55.9

Q ss_pred             ceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCc
Q psy16116        342 PLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANG  415 (612)
Q Consensus       342 vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~  415 (612)
                      ++|+|||++.++++|+++|.. +.+..+.++.+. .|+++|||||+|.+.++|++|++ +++..|+||.|.|..+.+
T Consensus         8 ifV~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~Ai~~l~~~~~~g~~l~V~~a~~   84 (90)
T d1x5sa1           8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGK   84 (90)
T ss_dssp             EEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEEEC
T ss_pred             EEEECCCCcCCHHHHHHhhhccccccceeeccccccccccceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcCC
Confidence            335555555444444444443 347788887765 58899999999999999999996 899999999999987654

>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: CBP20, 20KDa nuclear cap-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=7e-12  Score=106.03  Aligned_cols=74  Identities=14%  Similarity=0.104  Sum_probs=59.0

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccC
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKAN  414 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~  414 (612)
                      +++|+|||.+.++++|+++|.. +.+.+|.+++++ +|+++|||||+|.+.++|++|++ +|+..++||.|.|..+.
T Consensus         9 tlfV~nlp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~gr~i~V~~a~   85 (93)
T d1h2vz_           9 TLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDA   85 (93)
T ss_dssp             EEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEES
T ss_pred             EEEEeCCCCCCCHHHHHHHHHHHCCcceeccccccccccccceEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence            3446666666666666655554 458899999886 48899999999999999999997 79999999999997653

>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.21  E-value=2.8e-12  Score=106.90  Aligned_cols=74  Identities=18%  Similarity=0.188  Sum_probs=54.2

Q ss_pred             ceecCCCHHHH-HhhHhhcccc-cCeeeEEEeeC--CCCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccCc
Q psy16116        342 PLVQNIWLSLL-LNTIPGYEQV-LGLGGVALCLS--AFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANG  415 (612)
Q Consensus       342 vlV~nLp~~~~-e~~fkeff~~-~~v~~V~ii~d--~~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~~  415 (612)
                      ++|+|||++.+ ++.|+++|.. |.+.+|+|..+  .+|+++|||||+|.+.++|++||++|+..++||.|+|..+..
T Consensus         7 l~V~nLp~~~t~ed~l~~~F~~~G~i~~v~i~~~~~~~~~~kg~afV~f~~~~~a~~Al~~n~~~~~gr~l~V~~a~~   84 (86)
T d2ghpa3           7 IMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERALQMNRSLLGNREISVSLADK   84 (86)
T ss_dssp             EEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHGGGTTEEETTEEEEEEECCC
T ss_pred             EEEECCCCCcccHHHHHHHHHhhhhccceeeecccCCccccceeeeEEECCHHHHHHHHhcCCCEECCEEEEEEEcCC
Confidence            34555555443 3334444433 35888988764  368999999999999999999999999999999999987754

>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor 3B subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=6.1e-12  Score=103.71  Aligned_cols=74  Identities=15%  Similarity=0.070  Sum_probs=57.8

Q ss_pred             ceecCCCHHHHHhhHhhcccc-cCee-eEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCc
Q psy16116        342 PLVQNIWLSLLLNTIPGYEQV-LGLG-GVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANG  415 (612)
Q Consensus       342 vlV~nLp~~~~e~~fkeff~~-~~v~-~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~  415 (612)
                      ++|+|||++.++++|+++|.. +.+. .+++++++ +|+++|||||+|.+.++|++||+ +++..++||.|.|..+..
T Consensus         1 lfV~nLp~~~te~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~g~~~~gr~l~v~~a~~   78 (83)
T d1x5ta1           1 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFK   78 (83)
T ss_dssp             EEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEESCC
T ss_pred             CEEcCCCCcCcHHHHHHHHHHhCceeeeEEEEeeccccccCceEEEEECCHHHHHHHHHhCCCcEECCEEEEEEEecC
Confidence            356777776666666666654 3343 45677775 58999999999999999999996 899999999999987754

>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.19  E-value=6.8e-12  Score=103.87  Aligned_cols=73  Identities=19%  Similarity=0.214  Sum_probs=58.0

Q ss_pred             eecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCC----CCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCc
Q psy16116        343 LVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFG----RRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANG  415 (612)
Q Consensus       343 lV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~G----rsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~  415 (612)
                      +|+|||++.++++|+++|.. +.+.+|+|++++++    +++|||||+|.+.++|++|++ +|+..++||.|.|..+.+
T Consensus         2 fV~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~~~kG~afV~f~~~~~A~~A~~~~~~~~~~g~~i~V~~a~~   80 (85)
T d2cpfa1           2 FIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISER   80 (85)
T ss_dssp             EEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEECSSC
T ss_pred             EEcCCCCCCCHHHHHHHHHHhCCccccceecccccccccccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCC
Confidence            46667766666666665554 45889999887653    468999999999999999996 799999999999987653

>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=2e-11  Score=103.02  Aligned_cols=74  Identities=22%  Similarity=0.172  Sum_probs=60.5

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCc
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANG  415 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~  415 (612)
                      +++|+|||++.++++|+++|.. +.+.+|+++.++.+ ++|||||+|.+.++|++|++ +|+..|+||.|.|..+..
T Consensus        13 ~l~v~nLp~~~t~~~L~~~F~~~G~v~~v~~~~~~~~-~kg~afV~f~~~~~a~~Ai~~l~~~~~~g~~l~V~~A~~   88 (93)
T d2cq3a1          13 RLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA   88 (93)
T ss_dssp             EEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTT-TCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCS
T ss_pred             EEEEECCCCCCCHHHHHHHHhhcceeeeccccccccC-CcceeEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCc
Confidence            4557777777777777766654 45889999888655 79999999999999999996 799999999999987765

>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Cleavage stimulation factor, 64 kda subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=5.3e-12  Score=108.53  Aligned_cols=75  Identities=19%  Similarity=0.168  Sum_probs=57.6

Q ss_pred             ceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCcc
Q psy16116        342 PLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGE  416 (612)
Q Consensus       342 vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~  416 (612)
                      ++|+|||.+.++++|+++|.. +.+.+|+|+.++ +|+++|||||+|.+.++|++|++ +++..|+||.|.|..+...
T Consensus        11 l~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~i~V~~a~~~   88 (104)
T d1p1ta_          11 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASE   88 (104)
T ss_dssp             EEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTCT
T ss_pred             EEEECCCCcCCHHHHHHhhhccccccccccccccceeccCCceEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence            335555555555555544443 348899998876 58999999999999999999997 6999999999999877543

>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Matrin 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.18  E-value=1.7e-11  Score=103.04  Aligned_cols=73  Identities=12%  Similarity=0.148  Sum_probs=63.3

Q ss_pred             cccEEEEeCCCCC-CCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH---hCCcccC
Q psy16116        437 AQVIIRMRGLPYE-CTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS---KHKESIG  512 (612)
Q Consensus       437 ~~~~VfV~nLP~s-~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~---~~~~~ig  512 (612)
                      .+++|||+|||.. +|++||+++|+.||        .+.+|.+..     .+++|||+|++.++|.+|++   .++..++
T Consensus         7 ~sr~v~v~nl~~~~~t~~eL~~lF~~fG--------~I~~i~i~~-----~k~~afV~f~~~~~A~~A~~~l~~~~~~~~   73 (89)
T d1x4da1           7 TRRVVHIMDFQRGKNLRYQLLQLVEPFG--------VISNHLILN-----KINEAFIEMATTEDAQAAVDYYTTTPALVF   73 (89)
T ss_dssp             CCCEEEEESCCCSSSHHHHHHTTTGGGS--------CEEEEEECS-----SSSCEEEEESSHHHHHHHHHHHHHSCCEET
T ss_pred             CCcEEEEECCCCCcCCHHHHHHHHHhhC--------CeEEEEeec-----cceEEEEEEcchhhHHHHHHHHhhCCCccC
Confidence            4678999999986 78999999999999        456688763     45799999999999999996   3778899


Q ss_pred             CEEEEEEecc
Q psy16116        513 IRYIELFRST  522 (612)
Q Consensus       513 gR~IeV~~as  522 (612)
                      ||.|.|..+.
T Consensus        74 gr~l~V~~s~   83 (89)
T d1x4da1          74 GKPVRVHLSQ   83 (89)
T ss_dssp             TEECEEEEEC
T ss_pred             CceEEEEECC
Confidence            9999999875

>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=7.9e-12  Score=104.67  Aligned_cols=73  Identities=14%  Similarity=0.099  Sum_probs=57.3

Q ss_pred             ceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCc
Q psy16116        342 PLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANG  415 (612)
Q Consensus       342 vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~  415 (612)
                      ++|+|||.+.++++|+++|.. +.+..++|+.+.. .++|||||+|.+.++|++||+ +|+..|+||.|.|..+..
T Consensus        11 l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~-~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~V~~a~~   85 (89)
T d1cvja2          11 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN-GSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS   85 (89)
T ss_dssp             EEEESCCSSCCHHHHHHHHHTTSCEEEEEECCBTT-BCCSCEEEEESCHHHHHHHTTSSSEEEETTEEEEEEECCC
T ss_pred             EEEeCCCCCCCHHHHHHHHHhcCCceEEEEEeecC-CCcceeEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence            445666666555555555544 4588899988864 488999999999999999996 799999999999987754

>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolysin TIAR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=3.2e-11  Score=101.09  Aligned_cols=74  Identities=14%  Similarity=0.021  Sum_probs=57.4

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCc
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANG  415 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~  415 (612)
                      +++|+|||.+.++++|+++|.. +.+..|+++.++.+ .+|||||+|.+.++|++|++ +++..|+||.|+|..+..
T Consensus        10 tl~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~~-~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~a~~   85 (90)
T d2cqia1          10 TLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS-NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATT   85 (90)
T ss_dssp             EEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS-SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred             EEEEECCCCCCCHHHHHHHHHhcCCceeeeeecccCc-cceeeEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcCC
Confidence            3445666665555555555543 45889999888654 48999999999999999997 799999999999987754

>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Sex-lethal protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.14  E-value=2.6e-11  Score=100.54  Aligned_cols=71  Identities=15%  Similarity=0.100  Sum_probs=54.8

Q ss_pred             ceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCc--eEEEEec
Q psy16116        342 PLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDK--RYIEVTK  412 (612)
Q Consensus       342 vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~Igg--R~IeV~~  412 (612)
                      ++|+|||++..+++|+++|.. +.+.++++++++ +|+++|||||+|.+.++|++|++ +|+..+.|  |.|.|..
T Consensus         9 lfV~nlp~~~te~~l~~~F~~~G~i~~~~~~~d~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~V~~   84 (85)
T d1b7fa2           9 LYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRL   84 (85)
T ss_dssp             EEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred             EEEeCCCCCCCHHHHHHHHHhhCCEeeeeeecccccccCceeEEEEECCHHHHHHHHHHHCCCEeCCCCeEEEEEE
Confidence            445566665555555555544 458899999886 58999999999999999999997 78888865  7788864

>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hu antigen D (Hud)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=2.3e-11  Score=101.06  Aligned_cols=71  Identities=13%  Similarity=0.074  Sum_probs=54.2

Q ss_pred             ceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCceE--EEEec
Q psy16116        342 PLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRY--IEVTK  412 (612)
Q Consensus       342 vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~--IeV~~  412 (612)
                      ++|+|||.+.++++|+++|.. +.+.++++++++ +|+++|||||+|.+.++|++|++ +|+..++|+.  |+|..
T Consensus         9 lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kg~afV~f~~~~~a~~Ai~~lng~~~~G~~~~i~V~~   84 (85)
T d1fxla2           9 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKF   84 (85)
T ss_dssp             EEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred             EEEeCCCCCCCHHHHHHHHHHhCCccccccccccccccCCCeeEEEEcCHHHHHHHHHHhCCCEeCCCCEEEEEEe
Confidence            345555555555555555543 458999999986 58999999999999999999996 8999998754  77754

>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Pre-mRNA branch site protein p14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=3.6e-11  Score=104.64  Aligned_cols=73  Identities=14%  Similarity=0.053  Sum_probs=57.1

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCc
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANG  415 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~  415 (612)
                      +|+|+|||++.++++|+++|.. |.+.+|++..  +|+++|||||+|.+.++|++|++ +|+..|+||.|.|..+..
T Consensus         9 ~l~V~nLp~~~te~~l~~~F~~~G~v~~i~~~~--~~~~kG~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a~~   83 (114)
T d2f9da1           9 ILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGN--TPETRGTAYVVYEDIFDAKNACDHLSGFNVCNRYLVVLYYNA   83 (114)
T ss_dssp             EEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEC--STTTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCH
T ss_pred             EEEEECCCCCCCHHHHHHHHhhcCCeEeecccc--cCCcCCeEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence            4556666666666666655554 4588888864  57789999999999999999996 899999999999977654

>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif, single-stranded-interacting protein 1, RBMS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding motif, single-stranded-interacting protein 1, RBMS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=3.8e-11  Score=102.81  Aligned_cols=73  Identities=11%  Similarity=0.032  Sum_probs=59.5

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEecc
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKA  413 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s  413 (612)
                      +++|+|||++.++++|+++|.. +.+..+++..+.+|+++|||||+|.+.++|++|++ +||..|+||.+.|..+
T Consensus        20 ~lfV~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~A~~Ai~~lng~~i~gr~~~v~~~   94 (101)
T d1x5oa1          20 NLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT   94 (101)
T ss_dssp             EEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred             EEEEeCCCCCCCHHHHHHHHhhcccccceeeecccccccccceeEEeCCHHHHHHHHHHhCCCEECCcCCccCCC
Confidence            3456777777666777766654 45888999888889999999999999999999996 8999999998777544

>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 1, SFRS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=8.3e-11  Score=99.45  Aligned_cols=78  Identities=15%  Similarity=-0.005  Sum_probs=60.9

Q ss_pred             CCCcccceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEecc
Q psy16116        336 NPVALCPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKA  413 (612)
Q Consensus       336 ~~~~l~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s  413 (612)
                      ...+.+++|+|||++.++++|+++|.. +.+..+.+..  ++.++|||||+|++.++|++||+ +|+..|+||.|+|..+
T Consensus        11 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~e~a~~Ai~~l~g~~~~g~~l~V~~a   88 (95)
T d1x4aa1          11 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKN--RRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFP   88 (95)
T ss_dssp             CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECC--SSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred             CCCCCEEEEECCCCCCCHHHHHHHHhcCCceEEEEecc--cccccceEEEEECCHHHHHHHHHHhCCCEECCEEEEEEec
Confidence            344446778888887777777777765 4466666643  45678999999999999999996 7999999999999776


Q ss_pred             Cc
Q psy16116        414 NG  415 (612)
Q Consensus       414 ~~  415 (612)
                      ..
T Consensus        89 ~~   90 (95)
T d1x4aa1          89 RS   90 (95)
T ss_dssp             CC
T ss_pred             cC
Confidence            53

>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 28
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.07  E-value=2.1e-10  Score=96.71  Aligned_cols=73  Identities=21%  Similarity=0.186  Sum_probs=53.9

Q ss_pred             eecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCC-CCCcceEEEEeCCHHHHHHHHH-hC------CCccCceEEEEecc
Q psy16116        343 LVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAF-GRRNGEAIVRFIDQEHRDMALK-RH------KHHIDKRYIEVTKA  413 (612)
Q Consensus       343 lV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~-GrsrG~AFVeF~S~EdA~kAL~-~n------g~~IggR~IeV~~s  413 (612)
                      +|+|||++.++++|+++|.. +.+.++.++.++. |+++|||||+|.+.++|++||+ ++      +..++||.|.|..+
T Consensus        12 fV~nLp~~~te~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~gr~l~v~~a   91 (98)
T d1x4ha1          12 FIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLKVDLA   91 (98)
T ss_dssp             EEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCEEEEECC
T ss_pred             EEcCCCCcCCHHHHHHHHhccccceeeeeccccccccccceEEEEEcCHHHHHHHHHHcccccccCCcEECCEEEEEEEC
Confidence            35555555555555554443 3477888877764 7789999999999999999997 33      56788999999776


Q ss_pred             Cc
Q psy16116        414 NG  415 (612)
Q Consensus       414 ~~  415 (612)
                      ..
T Consensus        92 ~~   93 (98)
T d1x4ha1          92 VT   93 (98)
T ss_dssp             CC
T ss_pred             CC
Confidence            54

>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Calcipressin-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.07  E-value=4.5e-11  Score=103.43  Aligned_cols=72  Identities=11%  Similarity=0.034  Sum_probs=61.6

Q ss_pred             ccEEEEeCCCCCC-CH----HHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCccc
Q psy16116        438 QVIIRMRGLPYEC-TA----KQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESI  511 (612)
Q Consensus       438 ~~~VfV~nLP~s~-te----~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~i  511 (612)
                      ..+|||+||+.++ ++    ++|+++|+.||    .|    .++++.     +++|+|||+|.+.++|.+|++ +|+..|
T Consensus         5 ~~~L~v~nl~~~v~~~d~~k~~l~~lF~~~G----~i----~~~~~~-----k~~~~afV~f~~~~~A~~Ai~~lng~~~   71 (104)
T d1weya_           5 SSGLIACVANDDVFSESETRAKFESLFRTYD----KD----TTFQYF-----KSFKRVRINFSNPLSAADARLRLHKTEF   71 (104)
T ss_dssp             CCEEEEECCCGGGGSTTTHHHHHHHHHHTTC----SS----CEEEEE-----TTTTEEEEECSSTTHHHHHHHTSTTSEE
T ss_pred             CceEEEEeCCchhcCcHHHHHHHHHHhcccc----cc----eEEEEe-----cCCCEEEEEECCHHHHHHHHHHhccccc
Confidence            4579999999986 33    56999999999    34    457776     568899999999999999997 799999


Q ss_pred             CCEEEEEEecc
Q psy16116        512 GIRYIELFRST  522 (612)
Q Consensus       512 ggR~IeV~~as  522 (612)
                      +||.|.|..+.
T Consensus        72 ~g~~l~v~~a~   82 (104)
T d1weya_          72 LGKEMKLYFAQ   82 (104)
T ss_dssp             TTEECEEECCC
T ss_pred             CCCEeEEeecc
Confidence            99999998874

>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein EWS
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=7e-11  Score=100.36  Aligned_cols=67  Identities=18%  Similarity=0.220  Sum_probs=51.1

Q ss_pred             HHHHhhHhhcccc-----cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCcc
Q psy16116        350 SLLLNTIPGYEQV-----LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGE  416 (612)
Q Consensus       350 ~~~e~~fkeff~~-----~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~  416 (612)
                      ++++++|+.|+..     .....+.+..++ +|+++|||||+|.+.++|++|++ +|+..++||.|.|..+...
T Consensus        23 ~~l~~~F~~~G~i~~~~~~~~~~~~~~~d~~~~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~a~~~   96 (101)
T d2cpea1          23 DDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLARKK   96 (101)
T ss_dssp             HHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETTEECEEECSSCC
T ss_pred             HHHHHHHHHCceEEEeeecccceeEEeeccccccccceeeEEecCHHHHHHHHHHhCCCEECCEEEEEEEcCCC
Confidence            5555566555532     112456666665 48999999999999999999997 7999999999999887643

>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif, single-stranded-interacting protein 2, RBMS2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding motif, single-stranded-interacting protein 2, RBMS2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=3.4e-11  Score=96.46  Aligned_cols=67  Identities=9%  Similarity=0.018  Sum_probs=55.8

Q ss_pred             ceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEE
Q psy16116        342 PLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYI  408 (612)
Q Consensus       342 vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~I  408 (612)
                      ++|+|||.+.++++|+++|.. +.+..+++.+++ +|+++|||||+|.+.++|++|++ +|+..++||.|
T Consensus         1 lyV~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~Gr~~   70 (72)
T d1x4ea1           1 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMA   70 (72)
T ss_dssp             EEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESC
T ss_pred             CEEeCCCCcCCHHHHHHHHhhhccccccccccccccccccceeEEEECCHHHHHHHHHHhCCCEECCEEC
Confidence            457788887777777777765 558888888876 48899999999999999999996 89999999865

>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hypothetical protein FLJ20273
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=1.2e-10  Score=98.58  Aligned_cols=75  Identities=19%  Similarity=0.043  Sum_probs=57.4

Q ss_pred             cceecCCCHHHHHhhHhhcccc-c-CeeeEEEeeCC--CCCCcceEEEEeCCHHHHHHHHH-hC--CCccCceEEEEecc
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-L-GLGGVALCLSA--FGRRNGEAIVRFIDQEHRDMALK-RH--KHHIDKRYIEVTKA  413 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~-~v~~V~ii~d~--~GrsrG~AFVeF~S~EdA~kAL~-~n--g~~IggR~IeV~~s  413 (612)
                      +++|+|||.+.++++|+++|.. + .+.+|+++++.  .|+++|||||+|.+.++|.+|++ ++  +..++|+.|.|..+
T Consensus         3 rLyV~nLp~~~te~~l~~~f~~~g~~i~~v~~~~~~~~~~~~rg~aFV~F~~~~~A~~Ai~~l~~~~~~~~g~~i~V~~A   82 (96)
T d2disa1           3 RLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWA   82 (96)
T ss_dssp             EEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEEEES
T ss_pred             EEEEcCCCCcCCHHHHHHHHHHhCCcceEEEEeeeccccccCCCeEEEEEcCHHHHHHHHHHHcCCCeEECCEEEEEEEc
Confidence            4667777776666666665554 3 37889988875  38899999999999999999997 44  34568999999877


Q ss_pred             Cc
Q psy16116        414 NG  415 (612)
Q Consensus       414 ~~  415 (612)
                      ..
T Consensus        83 ~p   84 (96)
T d2disa1          83 EP   84 (96)
T ss_dssp             CS
T ss_pred             CC
Confidence            54

>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1, Raver-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Ribonucleoprotein PTB-binding 1, Raver-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.99  E-value=2.3e-10  Score=92.92  Aligned_cols=70  Identities=14%  Similarity=0.197  Sum_probs=57.1

Q ss_pred             ceecCCCHHHHHhhHhhcccccCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCcc
Q psy16116        342 PLVQNIWLSLLLNTIPGYEQVLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGE  416 (612)
Q Consensus       342 vlV~nLp~~~~e~~fkeff~~~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~  416 (612)
                      ++|+|||++.++++|+++|...++..+.+     ++++|||||+|.+.++|++|++ +|+..++||.|.|..+..+
T Consensus         1 i~V~nLp~~~t~~~l~~~F~~~g~~~~~~-----~~~~g~afv~f~~~~~A~~Ai~~ln~~~~~g~~l~V~~a~~d   71 (75)
T d1wi6a1           1 ILIRGLPGDVTNQEVHDLLSDYELKYCFV-----DKYKGTAFVTLLNGEQAEAAINTFHQSRLRERELSVQLQPTD   71 (75)
T ss_dssp             EEEECCCTTCCHHHHHHHTTTSCEEEEEE-----ETTTTEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECCST
T ss_pred             CEEeCCCCcCCHHHHHHHHhcccccceee-----cccceeEEEEECCHHHHHHHHHHhCCccCCCCEEEEEEeCCC
Confidence            46788888888888888777655444443     5789999999999999999995 8999999999999877553

>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8, ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Alkylation repair AlkB homolog 8, ALKBH8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=2.9e-10  Score=97.65  Aligned_cols=70  Identities=16%  Similarity=0.199  Sum_probs=55.4

Q ss_pred             ccEEEEe--CCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCccc---
Q psy16116        438 QVIIRMR--GLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESI---  511 (612)
Q Consensus       438 ~~~VfV~--nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~i---  511 (612)
                      ..+++|.  |||+++|+++|+++|++||        .++.|++.     +.+|||||+|.+.++|.+|++ +||..+   
T Consensus        18 t~~l~V~ng~L~~~vte~~L~~~F~~~G--------~i~~i~~~-----~~k~~aFV~f~~~e~A~~A~~~lng~~i~~~   84 (101)
T d2cq2a1          18 TQSLVVANGGLGNGVSRNQLLPVLEKCG--------LVDALLMP-----PNKPYSFARYRTTEESKRAYVTLNGKEVVDD   84 (101)
T ss_dssp             CSEEEEETCTGGGTCCHHHHHHHHHHHS--------CEEEEECC-----TTCSCEEEEESSHHHHHHHHHHTTTCEEECT
T ss_pred             CceEEEECCCCCCCCCHHHHHHHHHhhC--------cccEEeec-----cCccEEEEEECCHHHHHHHHHHhCCCCCCCC
Confidence            4567775  5999999999999999999        34567665     346899999999999999995 788776   


Q ss_pred             CCEEEEEEe
Q psy16116        512 GIRYIELFR  520 (612)
Q Consensus       512 ggR~IeV~~  520 (612)
                      .++.+.+..
T Consensus        85 ~~~~i~~~~   93 (101)
T d2cq2a1          85 LGQKITLYL   93 (101)
T ss_dssp             TSCEEECEE
T ss_pred             CCcEEEEEE
Confidence            235555543

>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: E3 ubiquitin protein ligase CNOT4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.99  E-value=1.8e-10  Score=96.41  Aligned_cols=71  Identities=18%  Similarity=0.159  Sum_probs=56.5

Q ss_pred             cceecCCCHHHHHhhH---hhcccc-cCeeeEEEeeCCC-C---CCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEe
Q psy16116        341 CPLVQNIWLSLLLNTI---PGYEQV-LGLGGVALCLSAF-G---RRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVT  411 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~f---keff~~-~~v~~V~ii~d~~-G---rsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~  411 (612)
                      .|+|+|||++.+++++   +++|.. |.+.+|.+++++. +   ..+|||||+|++.++|++|++ +|+..++||.|+|.
T Consensus        10 ~vyV~nLp~~~t~~~l~~~~e~F~~~G~I~~v~i~~~~~~~~~~~~~g~aFV~f~~~~~A~~Ai~~lng~~~~gr~lkvS   89 (89)
T d2cpia1          10 LVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLKAS   89 (89)
T ss_dssp             CEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred             EEEEECCCCccCHHHHHHHHHHhcccCCceEEEEeeccCcCCCCCcceEEEEecccchhHHHHHHHhCCCEECCEEEEEC
Confidence            4567777777776666   555544 6699999998864 2   345999999999999999996 89999999999873

>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: TAR DNA-binding protein 43, TDP-43
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=9e-11  Score=97.98  Aligned_cols=71  Identities=11%  Similarity=0.010  Sum_probs=55.0

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccCcc
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKANGE  416 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~~~  416 (612)
                      +++|+|||++.++++|+++|.. +.+.+|++.    ++++|||||+|++.++|++||. +++.|+||.|+|..+..+
T Consensus         7 ~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~----~~~~gfafV~f~~~~~a~~a~~-~~~~i~g~~l~v~~a~~k   78 (88)
T d1wf0a_           7 GVFVGRCTGDMTEDELREFFSQYGDVMDVFIP----KPFRAFAFVTFADDQIAQSLCG-EDLIIKGISVHISNAEPK   78 (88)
T ss_dssp             EEEEESCCSSSCHHHHHHHSTTTSCCCEEECC----SSCCSCCEEECSCHHHHHHTTT-CEEEETTEEEEEECCCCC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHHcCCceEEEEe----eccCceEEEEECCHHHHHHHHh-CCCEECCEEeEEEeCCCC
Confidence            4557777777777777766665 346777653    4578999999999999999996 778899999999887543

>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Lupus LA protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=2.4e-10  Score=99.89  Aligned_cols=70  Identities=14%  Similarity=0.178  Sum_probs=55.6

Q ss_pred             ccEEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCH-HHHHHHHH-hCCcccCCEE
Q psy16116        438 QVIIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKE-EEADKALS-KHKESIGIRY  515 (612)
Q Consensus       438 ~~~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~-edA~kAL~-~~~~~iggR~  515 (612)
                      ...+||+|||+++|+++|+++|+.||        .+..|.|+     +.+|||||.|.+. ++|..|+. +++..+.++.
T Consensus        11 ~~~~fvgnL~~~~tee~Lk~~F~~fG--------~V~~v~i~-----~~kg~gfV~F~~~~~~A~~a~~~~~~~~l~~~~   77 (113)
T d1owxa_          11 CLLKFSGDLDDQTCREDLHILFSNHG--------EIKWIDFV-----RGAKEGIILFKEKAKEALGKAKDANNGNLQLRN   77 (113)
T ss_dssp             CEEEEEESCCSSCCHHHHHHHTCSSC--------CEEEEECC-----TTCSEEEEEESSCHHHHHHHHHHTTTSCBCTTS
T ss_pred             CeEEEECCCCCCCCHHHHHHHHHhcC--------ChheEEEe-----cCCceEEEEecCcHHHHHHHHHHhcCCceecCc
Confidence            34579999999999999999999999        45678887     3479999999995 78888885 6877766555


Q ss_pred             EEEEe
Q psy16116        516 IELFR  520 (612)
Q Consensus       516 IeV~~  520 (612)
                      +.|..
T Consensus        78 ~~v~~   82 (113)
T d1owxa_          78 KEVTW   82 (113)
T ss_dssp             SSEEE
T ss_pred             eEEEE
Confidence            44433

>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 41, RBM41
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=3.5e-10  Score=96.25  Aligned_cols=76  Identities=13%  Similarity=0.129  Sum_probs=54.8

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCcc
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSA-FGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGE  416 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~-~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~  416 (612)
                      +++|+|||.+..+++|+++|.. +.+..++++.+. .|+++|||||+|.+.++|++||+ +|+..|+||.|.|..+..+
T Consensus        20 tl~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~~fV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ak~k   98 (102)
T d2cpxa1          20 VLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGKNK   98 (102)
T ss_dssp             EEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEECCCC
T ss_pred             EEEEeCCCCCCCHHHHHHHHhhccceeeEEeecccccccccccceEEeccHHHHHHHHHHhCCCEECCEEEEEEeCCCc
Confidence            3445555555444444444433 235556665553 68999999999999999999996 7999999999999877653

>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolysin TIAR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=3.2e-10  Score=96.30  Aligned_cols=70  Identities=13%  Similarity=0.048  Sum_probs=52.8

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCc
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANG  415 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~  415 (612)
                      +++|+||+.+..+++|+++|.. |.+.+|+++.+     +|||||+|.+.++|++|+. +++..|+||.|+|..+.+
T Consensus        20 ~l~v~nL~~~~te~~L~~~F~~fG~i~~v~i~~~-----kg~afV~f~~~~~A~~Ai~~l~~~~i~g~~l~v~~ak~   91 (96)
T d1x4ga1          20 TVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKE   91 (96)
T ss_dssp             EEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred             EEEEcCCCCCCCHHHHHHHHHHhCCceEEEEEec-----ceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence            3445555555555555544443 45889998754     7999999999999999996 799999999999977643

>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein KIAA1579
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=2.1e-10  Score=95.90  Aligned_cols=71  Identities=15%  Similarity=0.122  Sum_probs=56.9

Q ss_pred             cceecCCCHHHHHhhHhhcccccCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCcc
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQVLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGE  416 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~  416 (612)
                      +++|+|||++.++++|+++|...++..+.+     ++++|||||+|.+.++|++|++ +|+..++||.|.|..+..+
T Consensus         7 ~i~V~nLp~~~t~~~l~~lF~~~G~~~~~~-----~~~kg~afV~f~~~~~A~~Ai~~ln~~~~~G~~l~V~~a~~~   78 (88)
T d1wg1a_           7 GILVKNLPQDSNCQEVHDLLKDYDLKYCYV-----DRNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTD   78 (88)
T ss_dssp             CEEEESCCSSCCHHHHHHHTCSSCCCCEEE-----EGGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred             EEEEeCCCCccChHHHHHHHHhcCceeeee-----eccCCceEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcCCC
Confidence            566788888888888887777654444443     4678999999999999999996 8999999999999877543

>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolin
species: Golden hamster (Mesocricetus auratus) [TaxId: 10036]

Probab=98.95  E-value=1.8e-10  Score=97.52  Aligned_cols=73  Identities=15%  Similarity=0.210  Sum_probs=53.9

Q ss_pred             cceecCCCHHHHHhhHhhcccccCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCcc
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQVLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGE  416 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~  416 (612)
                      +++|+|||++.++++|+++|...+  .|..+. ..|+++|||||+|.+.++|++|++ +|+..|+||.|.|..+..+
T Consensus        18 ~l~V~nL~~~~te~~l~~~F~~~g--~v~~~~-~~~~~~~~afV~f~~~~~A~~A~~~l~~~~~~gr~i~V~~a~~k   91 (96)
T d1fjca_          18 TLLAKNLSFNITEDELKEVFEDAL--EIRLVS-QDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK   91 (96)
T ss_dssp             EEEEESCCSSCCHHHHHHHHCSEE--EECCEE-ETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSS
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcc--cceeee-ecCccccEEEEEeCCHHHHHHHHHHcCCCEECCEEEEEEEeCCC
Confidence            445666666666666666655321  222222 368899999999999999999996 8999999999999877653

>d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=4.7e-10  Score=96.61  Aligned_cols=83  Identities=16%  Similarity=0.157  Sum_probs=68.6

Q ss_pred             cccEEEEeCC--CCCC--------CHHHHHHHHhcCCCCccccccCceeEEEeeCCCC---CceeEEEEEeCCHHHHHHH
Q psy16116        437 AQVIIRMRGL--PYEC--------TAKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDG---KATGDAFVLFEKEEEADKA  503 (612)
Q Consensus       437 ~~~~VfV~nL--P~s~--------te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~G---rskG~AFV~F~s~edA~kA  503 (612)
                      ++.+|.|+||  |...        ..+||++.|++||        .+.+|.|+++.++   ..+|++||+|.+.++|.+|
T Consensus         3 Ps~vl~l~N~~~~~~l~~~~~~~~i~edi~~e~~k~G--------~v~~v~I~~~~~~~~~~~~g~vfV~f~~~e~A~~A   74 (104)
T d1o0pa_           3 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYG--------LVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKA   74 (104)
T ss_dssp             CCSEEEEESSCCTTTTTSHHHHHHHHHHHHHHHTTTS--------CEEEEECCCCTTSSSCTTCCEEEEEESCHHHHHHH
T ss_pred             CCcEEEEeCCCCHHHcCCchhHHHHHHHHHHHhcccC--------ceEEEEEeecCCCCccCCceEEEEEECCHHHHHHH
Confidence            3568999999  4443        3468999999999        4577998876644   3579999999999999999


Q ss_pred             HH-hCCcccCCEEEEEEecchHHHH
Q psy16116        504 LS-KHKESIGIRYIELFRSTTAEVQ  527 (612)
Q Consensus       504 L~-~~~~~iggR~IeV~~as~~e~~  527 (612)
                      +. +||..++||.|.|...+.+.+.
T Consensus        75 ~~~l~Gr~f~gR~v~v~f~~~~~y~   99 (104)
T d1o0pa_          75 MQGLTGRKFANRVVVTKYCDPDSYH   99 (104)
T ss_dssp             HHHHSSCCSSSSCCEEEEECHHHHH
T ss_pred             HHHHCCCEECCeEEEEEEcCHHHhh
Confidence            96 8999999999999999876654

>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: HIV Tat-specific factor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=9.4e-10  Score=93.97  Aligned_cols=75  Identities=17%  Similarity=0.159  Sum_probs=61.4

Q ss_pred             cccEEEEeCC--CCCCC---------HHHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH
Q psy16116        437 AQVIIRMRGL--PYECT---------AKQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS  505 (612)
Q Consensus       437 ~~~~VfV~nL--P~s~t---------e~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~  505 (612)
                      .+.+|+|+||  |.+..         ++||++.|++||        .+..|.+..   ++.+|+|||+|++.++|.+|+.
T Consensus         7 ~~r~v~l~nmf~~~~~~~~~~~~~~i~edv~~~~~~~G--------~V~~v~~~~---~~~~G~~fV~f~~~e~A~~A~~   75 (99)
T d2dita1           7 HERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFG--------QIRKLLLFD---RHPDGVASVSFRDPEEADYCIQ   75 (99)
T ss_dssp             SCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTS--------CCSEEEEET---TCTTCEEEEECSCHHHHHHHHH
T ss_pred             CccEEEEccCCCHHHhhcchHHHHHHHHHHHHHhcCcc--------cEEEEeccC---CCCccEEEEEECCHHHHHHHHH
Confidence            4578999999  65432         378999999999        345677764   3567999999999999999995


Q ss_pred             -hCCcccCCEEEEEEecc
Q psy16116        506 -KHKESIGIRYIELFRST  522 (612)
Q Consensus       506 -~~~~~iggR~IeV~~as  522 (612)
                       +|+..++||.|.|....
T Consensus        76 ~lng~~~~gr~i~v~~~~   93 (99)
T d2dita1          76 TLDGRWFGGRQITAQAWD   93 (99)
T ss_dssp             HSTTCEETTEECEEEECC
T ss_pred             HhCCcEECCEEEEEEEeC
Confidence             79999999999998753

>d1jmta_ d.58.7.3 (A:) U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Splicing factor U2AF subunits
domain: U2AF35 (35 KDa subunit)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=2.5e-10  Score=98.60  Aligned_cols=71  Identities=13%  Similarity=0.139  Sum_probs=59.9

Q ss_pred             ceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEec
Q psy16116        342 PLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTK  412 (612)
Q Consensus       342 vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~  412 (612)
                      +.+.++..+..++.|+++|.. |.+.+|+|.++.+|+++|+|||+|.+.++|.+|++ +||..++||.|.|..
T Consensus        30 ~~v~~~~~~~~ed~l~e~f~k~G~I~~v~I~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lng~~~~gr~i~v~~  102 (104)
T d1jmta_          30 VEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAEL  102 (104)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCEEE
T ss_pred             HHhhhhhhhhhHHHHHHHhccCCCEEEEEeecCCCCCEeeEEEEEEechhHHHHHHHHHCCCEECCEEEEEEE
Confidence            345666666667777777654 66999999999899999999999999999999996 899999999998854

>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=6.9e-10  Score=95.81  Aligned_cols=75  Identities=11%  Similarity=0.072  Sum_probs=62.1

Q ss_pred             cccceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCcc--CceEEEEeccC
Q psy16116        339 ALCPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHI--DKRYIEVTKAN  414 (612)
Q Consensus       339 ~l~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~I--ggR~IeV~~s~  414 (612)
                      -++|+|+||+++.++++|++.|.. |.+..|++..+   +++|||||+|++.++|++|++ +|+..|  +++.|+|..+.
T Consensus         7 ~~~v~V~NL~~~vte~~L~~~F~~~G~i~~~~i~~~---~~~g~aFV~f~~~e~A~~Ai~~ln~~~l~~~~~~l~v~~s~   83 (108)
T d2adba1           7 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK---NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK   83 (108)
T ss_dssp             EEEEESCSCCSTTHHHHHHHHHTTTSCEEEEEEEEE---TTEEEEEEEESCHHHHHHHHHHHHSCCSSTTCCCCEEEECS
T ss_pred             eEEEEEeCcCCCCCHHHHHHHHccCCcEEEEEEEee---CCCCeEEEEECCHHHHHHHHHHHCCCEeccCCcEEEEEecC
Confidence            357889999999999999988776 56888888765   368999999999999999996 888877  57888887765


Q ss_pred             cc
Q psy16116        415 GE  416 (612)
Q Consensus       415 ~~  416 (612)
                      ..
T Consensus        84 ~~   85 (108)
T d2adba1          84 LT   85 (108)
T ss_dssp             SC
T ss_pred             Cc
Confidence            43

>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=2.2e-11  Score=101.91  Aligned_cols=73  Identities=12%  Similarity=0.212  Sum_probs=49.9

Q ss_pred             ceecCCCHHHHHhhHhhcccc-cCeeeEE------EeeCCCCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEeccC
Q psy16116        342 PLVQNIWLSLLLNTIPGYEQV-LGLGGVA------LCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTKAN  414 (612)
Q Consensus       342 vlV~nLp~~~~e~~fkeff~~-~~v~~V~------ii~d~~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~s~  414 (612)
                      ++|+|||++.++++|+++|.. +.+.++.      +.....++++|||||+|.+.|+|++|+++|+..++||.|+|.+..
T Consensus         4 lyVgNLp~~~te~~l~~~F~~~g~~~~~~~~~~~~~~~~~~~~~kg~afV~f~~~e~a~~a~~l~g~~~~Gr~l~V~r~k   83 (90)
T d1u2fa_           4 LYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPH   83 (90)
T ss_dssp             EEECSCCTTCCTTHHHHHHHHHHTTTTSCCSSSCSEEECCEETTTTEEEEEESSCTTTTTGGGGSSCCSSSSCCCCBCTT
T ss_pred             EEEcCCCCccchHHHHHHHHhhCcEEEEEEeccceeeecccCCCceEEEEEeCCHHHHHHHHhhCCcEECCEEEEECCCC
Confidence            445555555554444444432 1122222      223345789999999999999999999999999999999996543

>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing octamer-binding protein, NonO {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Non-POU domain-containing octamer-binding protein, NonO
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.90  E-value=5e-10  Score=93.10  Aligned_cols=70  Identities=13%  Similarity=0.056  Sum_probs=55.8

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCc
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANG  415 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~  415 (612)
                      +++|+|||.+..+++|+++|.. +.+.+|++.+     .+|||||+|.+.++|++|++ +|+..|+||.|.|..+..
T Consensus        10 ~l~V~nLp~~~~~~~l~~~F~~~G~i~~i~~~~-----~k~~afV~f~~~~~A~~A~~~l~g~~i~g~~l~V~~A~~   81 (86)
T d2cpja1          10 RLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHK-----DKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACH   81 (86)
T ss_dssp             EEEEESCCTTCCHHHHHHHTSTTCCCSEEEEET-----TTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSC
T ss_pred             EEEEECCCCCCCHHHHHHHHHHhCCceEeeeec-----ccceEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCC
Confidence            3556666666666666666654 4588888864     46899999999999999997 799999999999987764

>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicesomal U1A protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=5.6e-10  Score=93.49  Aligned_cols=64  Identities=13%  Similarity=0.079  Sum_probs=50.0

Q ss_pred             HHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCc
Q psy16116        350 SLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANG  415 (612)
Q Consensus       350 ~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~  415 (612)
                      +++++.|.++|.. +.+.+|++.  ++|+++|||||+|++.++|++|++ +|+..++|+.|.|..+..
T Consensus        18 ~dl~~~l~~~f~~~G~i~~i~~~--~~~~~~g~afV~F~~~~~A~~A~~~~~~~~~~g~~l~v~~ak~   83 (91)
T d1nu4a_          18 DELKKSLHAIFSRFGQILDILVS--RSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKT   83 (91)
T ss_dssp             HHHHHHHHHHHGGGSCEEEEECC--HHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSS
T ss_pred             HHHHHHHHHHhcccccccceEEe--eeccCCCceEEEECCHHHHHHHHHHhCCCEECCEEEEEEEeCC
Confidence            5555555555554 457777664  357789999999999999999996 799999999999987754

>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=8.9e-10  Score=91.47  Aligned_cols=71  Identities=15%  Similarity=0.076  Sum_probs=53.6

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCcc-CceEEEEeccC
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHI-DKRYIEVTKAN  414 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~I-ggR~IeV~~s~  414 (612)
                      +++|+|||.+.++++|+++|.. +.+..+++..   ++++|||||+|++.++|.+|+. +++..| +||.|+|..+.
T Consensus        12 tL~V~NLp~~~te~~l~~~F~~~G~v~~~~~~~---~~~~~~afV~f~~~~~A~~A~~~l~~~~i~~g~~l~v~~sk   85 (88)
T d2adca2          12 TLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFF---QKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK   85 (88)
T ss_dssp             EEEEECCCTTCCHHHHHHHHHTTSCCEEEEEEC---SSSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECS
T ss_pred             EEEEECCCCCCCHHHHHHHhhccCCEEEEEEee---ecccceeEEEECCHHHHHHHHHhccCCEecCCCEEEEEeCC
Confidence            5567777777777777766654 3455555543   4568999999999999999996 888877 58999997664

>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleoporin 35
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.89  E-value=8.7e-10  Score=91.16  Aligned_cols=74  Identities=9%  Similarity=0.015  Sum_probs=59.7

Q ss_pred             cccceecCCCHHHHHhhHhhcccccCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHHhCCCccCceE-EEEeccCccc
Q psy16116        339 ALCPLVQNIWLSLLLNTIPGYEQVLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRY-IEVTKANGED  417 (612)
Q Consensus       339 ~l~vlV~nLp~~~~e~~fkeff~~~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~-IeV~~s~~~e  417 (612)
                      +..|+|+|+|.+.+++.++.|...+.+.++++     ++++|||||+|+++++|++||++|+..|+||. |.|.++..++
T Consensus         4 ~~wV~V~G~p~~~~~~il~~F~~~G~I~~~~~-----~~~~~~~fV~f~~~~~A~~Al~~nG~~~~g~~~vgV~~~~~k~   78 (81)
T d1wwha1           4 DTWVTVFGFPQASASYILLQFAQYGNILKHVM-----SNTGNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPCIDKN   78 (81)
T ss_dssp             GGEEEEECCCGGGHHHHHHHHHTTSCEEEEEE-----CSSSSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEECCCHH
T ss_pred             ccEEEEECCChHHHHHHHHHHHhhhhhheEEe-----cCCCCEEEEEEcccHHHHHHHhcCCCeECCcEEEEEEeCCChh
Confidence            44677889999888777766555566777766     46689999999999999999999999999986 5788876643

>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins C1/C2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoproteins C1/C2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=9.5e-10  Score=93.72  Aligned_cols=68  Identities=13%  Similarity=0.216  Sum_probs=50.7

Q ss_pred             cceecCCC-HHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCc
Q psy16116        341 CPLVQNIW-LSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANG  415 (612)
Q Consensus       341 ~vlV~nLp-~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~  415 (612)
                      +|+|+||+ +.+.+++|+++|.. +.+.+|+|       ++|||||+|++.++|++||+ +|+..|+||.|.|..+..
T Consensus        17 ~lfV~nL~~~~~~~~~L~~~F~~~G~i~~~~i-------~rg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~   87 (98)
T d1wf2a_          17 RVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSV-------HKGFAFVQYVNERNARAAVAGEDGRMIAGQVLDINLAAE   87 (98)
T ss_dssp             CEEEEEECTTTCCHHHHHHSSTTSSCEEEEEE-------ETEEEEEEESSHHHHHHHHHTTTTCEETTEECEEEETTS
T ss_pred             EEEEeCCCcccCCHHHHHHHHhhcCCEEEEEE-------eCCeEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence            34455564 33344455554443 44788887       47999999999999999997 799999999999987754

>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=6.6e-10  Score=95.45  Aligned_cols=60  Identities=17%  Similarity=0.291  Sum_probs=49.1

Q ss_pred             HHHHhhHhhcccccCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCcc
Q psy16116        350 SLLLNTIPGYEQVLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGE  416 (612)
Q Consensus       350 ~~~e~~fkeff~~~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~  416 (612)
                      +++.++|+.|+   .|..|+|++++    +|||||+|++.++|++|++ +++..|+||.|+|..+...
T Consensus        18 ~~L~~~F~~fG---~I~~v~i~~~~----kg~afV~f~~~~~A~~ai~~lng~~l~g~~l~v~~s~~~   78 (109)
T d2adca1          18 QSLFILFGVYG---DVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ   78 (109)
T ss_dssp             HHHHHHHHHHT---CEEEEEECCTT----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSCC
T ss_pred             HHHHHHHhhcc---ccceEEEEecc----cceEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCC
Confidence            55555555555   48899998763    6899999999999999996 7999999999999877543

>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: APOBEC1 stimulating protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=7.2e-10  Score=91.66  Aligned_cols=69  Identities=25%  Similarity=0.118  Sum_probs=50.4

Q ss_pred             ceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCc
Q psy16116        342 PLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANG  415 (612)
Q Consensus       342 vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~  415 (612)
                      ++|+|||.+.++++|+++|.. +.+..+.+     ++++|||||+|.+.++|.+|+. +|+..|+||.|.|..+..
T Consensus        11 l~V~nLp~~~te~~l~~~F~~~g~i~~~~~-----~~~rg~afV~f~~~~~A~~Ai~~l~~~~i~g~~i~V~~akP   81 (86)
T d2cpda1          11 LYVRNLMLSTSEEMIEKEFNNIKPGAVERV-----KKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP   81 (86)
T ss_dssp             EEEESCCTTCCHHHHHHHHHTTSTTCEEEE-----EECSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCC
T ss_pred             EEEcCCCCCCCHHHHHHhhcccceeeeEEE-----ccccEEEEEEeCCHHHHHHHHHHcCCCEECCEEEEEEeccC
Confidence            335556665555555555543 22444444     4578999999999999999997 799999999999987654

>d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 1, SFRS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=3e-10  Score=94.47  Aligned_cols=67  Identities=12%  Similarity=0.076  Sum_probs=48.3

Q ss_pred             ceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccC
Q psy16116        342 PLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKAN  414 (612)
Q Consensus       342 vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~  414 (612)
                      |+|+|||++.++++|+++|.. +.+.++.+..      +|||||+|.+.++|++||+ +|+..|+|+.|.|..+.
T Consensus         3 vfV~nlp~~~~~~~l~~~F~~~G~v~~~~i~~------~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~i~v~~~~   71 (87)
T d3begb1           3 VVVSGLPPSGSWQDLKDHMREAGDVCYADVYR------DGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR   71 (87)
T ss_dssp             EEEEECCSSCCTTHHHHHHGGGSCEEEEEECT------TSEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCE
T ss_pred             EEEECCCCcCCHHHHHHHHhhhcccccccccc------cceeeEEeCCHHHHHHHHHHhCCCEECCcEeEEeEEe
Confidence            345555555444444444443 3477887743      4899999999999999995 89999999998886654

>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.86  E-value=7e-10  Score=95.50  Aligned_cols=70  Identities=20%  Similarity=0.088  Sum_probs=51.9

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCc
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANG  415 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~  415 (612)
                      +++|+|||++.++++|+++|.. +.+..|.|     .+++|||||+|.+.++|++|++ +|+..|+||.|.|..+..
T Consensus        12 ~l~V~nLp~~~t~~~L~~~F~~fG~I~~v~l-----~~~kg~afV~f~~~~~A~~A~~~lng~~~~gr~l~v~~a~~   83 (111)
T d1whxa_          12 VILAKNLPAGTLAAEIQETFSRFGSLGRVLL-----PEGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPI   83 (111)
T ss_dssp             EEEEESCCTTCCHHHHHHHHHTTSCEEEEEC-----CSSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEET
T ss_pred             EEEEECCCCCCCHHHHHhhhhccCCccEEEe-----eccCceEEEEEcCHHHHHHHHHHHcCCccCCCeEEEEECCC
Confidence            3445566655555555555543 34777766     3467999999999999999996 799999999999976643

>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Negative elongation factor E, NELF-E
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=2.7e-09  Score=86.96  Aligned_cols=74  Identities=15%  Similarity=0.214  Sum_probs=58.2

Q ss_pred             CCCCcEeecCCCCCCCcccceecCCCHHHHHhhHhhcccccCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCC
Q psy16116        323 NQTPTVYTIPTPGNPVALCPLVQNIWLSLLLNTIPGYEQVLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKH  401 (612)
Q Consensus       323 ~~~~tvfV~~l~~~~~~l~vlV~nLp~~~~e~~fkeff~~~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~  401 (612)
                      .+..+|||.++            +++.+++++.|+.|+.   +.+|++.     +.+|||||+|.+.++|++|++ +|+.
T Consensus         3 ~~~~ti~V~~~------------~~te~~L~~~F~~~G~---I~~v~~~-----~~~~~afV~f~~~~~A~~Ai~~lng~   62 (79)
T d2bz2a1           3 RKGNTLYVYGE------------DMTPTLLRGAFSPFGN---IIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGT   62 (79)
T ss_dssp             CCCCEEEEECS------------SCCHHHHHHHHSTTCC---CSCEEEE-----TTTTEEEEECSSHHHHHHHHHHHTTC
T ss_pred             CCCCEEEEECC------------CCCHHHHHHHHhccCc---cceeeec-----cCCCEEEEEEcccHHHHHHHHHhCCC
Confidence            34567887652            2455777777777765   7788875     457899999999999999996 7999


Q ss_pred             ccCceEEEEeccCcc
Q psy16116        402 HIDKRYIEVTKANGE  416 (612)
Q Consensus       402 ~IggR~IeV~~s~~~  416 (612)
                      .++|+.|.|..+.++
T Consensus        63 ~~~g~~l~V~~a~~~   77 (79)
T d2bz2a1          63 QVESVQLKVNIARKQ   77 (79)
T ss_dssp             BCSSCBCEEEECCSS
T ss_pred             EECCEEEEEEEecCC
Confidence            999999999887653

>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: IGF-II mRNA-binding protein 2 isoform A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=5e-10  Score=91.75  Aligned_cols=69  Identities=13%  Similarity=0.055  Sum_probs=47.8

Q ss_pred             ceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCC-ccCceEEEEeccCc
Q psy16116        342 PLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKH-HIDKRYIEVTKANG  415 (612)
Q Consensus       342 vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~-~IggR~IeV~~s~~  415 (612)
                      ++|+|||.+.++++|+++|.. +.+.+++++     +++|||||+|.+.++|++|++ +|+. .++|+.|.|..+..
T Consensus         4 l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~-----~~rg~aFV~f~~~~~A~~Ai~~lng~~~~~G~~i~V~~a~~   75 (80)
T d2cqha1           4 LYIGNLSPAVTADDLRQLFGDRKLPLAGQVL-----LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVS   75 (80)
T ss_dssp             EEEECCCTTCCHHHHHHHHHHTTCCCSSCEE-----EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCC
T ss_pred             EEEECCCCCCCHHHHHHHHHHhCcEEEeEEe-----cccceEEEEECCHHHHHHHHHHhCCCeEECCEEEEEEEcCC
Confidence            345555555555555544443 224344443     457999999999999999996 7876 49999999987764

>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicesomal U1A protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=98.84  E-value=1.9e-09  Score=88.69  Aligned_cols=70  Identities=17%  Similarity=0.114  Sum_probs=51.4

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCcc-CceEEEEeccC
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHI-DKRYIEVTKAN  414 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~I-ggR~IeV~~s~  414 (612)
                      +++|+|||.+.+++.|+++|.. +.+..|+++++    ++|||||+|.+.++|.+|++ +++..| +|+.|.|..+.
T Consensus        10 tl~V~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~----~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~i~v~~ak   82 (83)
T d2b0ga1          10 ILFLTNLPEETNEMMLSMLFNQFPGFKEVRLVPN----RHDIAFVEFTTELQSNAAKEALQGFKITPTHAMKITFAK   82 (83)
T ss_dssp             EEEEESCCTTCCHHHHHHHHTTSTTEEEEEECTT----TCSCEEEEESSHHHHHHHHHHHTTCBSSTTCBCEEEECC
T ss_pred             EEEEECCCCCCCHHHHHhhhccCccEEEeeeecc----cceeEEEecCCHHHHHHHHHHhCCcEeCCCcEEEEEEec
Confidence            4446666666555555555544 45888888654    46899999999999999997 788777 56888887653

>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein 2, PTBP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein 2, PTBP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=5.4e-09  Score=86.68  Aligned_cols=71  Identities=7%  Similarity=0.038  Sum_probs=55.6

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH---hCCCccCceEEEEeccCcc
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK---RHKHHIDKRYIEVTKANGE  416 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~---~ng~~IggR~IeV~~s~~~  416 (612)
                      +++|+|||.+.++++++++|.. +.+.+|++..     ++|+|||+|.+.++|++|++   .++..++||.|+|..+..+
T Consensus        10 ~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~-----~~~~afV~f~~~e~A~~a~~~~~~~~~~~~g~~l~v~~sk~~   84 (88)
T d2cq1a1          10 VLHIRKLPGEVTETEVIALGLPFGKVTNILMLK-----GKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHK   84 (88)
T ss_dssp             EEEEESCCTTCCHHHHHHTTTTTSCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSCS
T ss_pred             EEEEeCCCCCCCHHHHHHHHhcccccccccccc-----cceEEEEEeCCHHHHHHHHHHHccCCCccCCCEEEEEECCCC
Confidence            5557777777777777766654 5588888763     46899999999999999996   3677899999999887654

>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9 (SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 9 (SFRS9)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.72  E-value=2e-09  Score=91.66  Aligned_cols=68  Identities=13%  Similarity=0.093  Sum_probs=49.7

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccC
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKAN  414 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~  414 (612)
                      +|+|+|||++..+++|+++|.. +.+..+.+.      ++|||||+|.+.++|++||+ +|+..++||.|+|....
T Consensus        17 ~i~V~Nlp~~~~~~~L~~~F~~~G~v~~~~i~------~~g~afV~f~~~~~a~~Ai~~lng~~~~g~~i~v~~~~   86 (98)
T d1wg4a_          17 RVLVSGLPPSGSWQDLKDHMREAGDVCYADVQ------KDGMGMVEYLRKEDMEYALRKLDDTKFRSHEGETSYIR   86 (98)
T ss_dssp             EEEEECCCSSCCHHHHHHHHTTSSCEEEEEEE------TTTEEEEEESSHHHHHHHHHHHSSEEEECTTSCEEEEE
T ss_pred             EEEEECCCCCCCHHHHHHHHHhhccccccccc------ccceEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEEe
Confidence            3445556555555555555543 346777764      46899999999999999996 79999999988886654

>d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=1.7e-08  Score=86.53  Aligned_cols=72  Identities=8%  Similarity=0.093  Sum_probs=57.2

Q ss_pred             CHHHHHhhHhh-cccccCeeeEEEeeCCCC---CCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCccchh
Q psy16116        348 WLSLLLNTIPG-YEQVLGLGGVALCLSAFG---RRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGEDFI  419 (612)
Q Consensus       348 p~~~~e~~fke-ff~~~~v~~V~ii~d~~G---rsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~e~~  419 (612)
                      .++++.+++++ |...|.+.+|+|.++.++   ...|++||+|.+.++|.+|++ ++|..++||.|.+.....+.+.
T Consensus        23 ~~~~i~edi~~e~~k~G~v~~v~I~~~~~~~~~~~~g~vfV~f~~~e~A~~A~~~l~Gr~f~gR~v~v~f~~~~~y~   99 (104)
T d1o0pa_          23 EYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDPDSYH   99 (104)
T ss_dssp             HHHHHHHHHHHHHTTTSCEEEEECCCCTTSSSCTTCCEEEEEESCHHHHHHHHHHHSSCCSSSSCCEEEEECHHHHH
T ss_pred             hHHHHHHHHHHHhcccCceEEEEEeecCCCCccCCceEEEEEECCHHHHHHHHHHHCCCEECCeEEEEEEcCHHHhh
Confidence            55667777764 444467999999877654   346999999999999999996 8999999999999877655443

>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein L-like {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein L-like
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.65  E-value=2.3e-08  Score=85.46  Aligned_cols=73  Identities=10%  Similarity=0.007  Sum_probs=53.5

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-h--CCCccCceEEEEeccCcc
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-R--HKHHIDKRYIEVTKANGE  416 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~--ng~~IggR~IeV~~s~~~  416 (612)
                      +++|+|||.+.++++|.++|.. +.+..|++.     +.+|+|||+|++.++|++|+. +  ++..++|+.|+|..+...
T Consensus        17 ~l~v~nlp~~~te~~l~~~F~~fG~I~~~~~~-----~~k~~AfV~f~~~e~A~~ai~~~~~~~~~~~g~~l~v~~s~~~   91 (104)
T d1wexa_          17 VVHVRGLCESVVEADLVEALEKFGTICYVMMM-----PFKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSK   91 (104)
T ss_dssp             EEEEESCCSSCCHHHHHHHHTTTSCEEEEEEE-----TTTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSSS
T ss_pred             EEEEeCCCCCCCHHHHHHhhhhcccceEEEEE-----ecceeEEEEeCCHHHHHHHHHHHcCCCcEEeeEEEEEEEcCCC
Confidence            4446666665555555555554 457888875     457899999999999999996 3  556789999999887654


Q ss_pred             ch
Q psy16116        417 DF  418 (612)
Q Consensus       417 e~  418 (612)
                      +.
T Consensus        92 ~~   93 (104)
T d1wexa_          92 RI   93 (104)
T ss_dssp             SC
T ss_pred             cc
Confidence            43

>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Putative RNA-binding protein 15B, Rbm15b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.63  E-value=2e-08  Score=84.79  Aligned_cols=70  Identities=10%  Similarity=0.009  Sum_probs=51.8

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCc--eEEEEeccCc
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDK--RYIEVTKANG  415 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~Igg--R~IeV~~s~~  415 (612)
                      +++|+||+.+.++++|+++|.. +.+..+++.+     .+|||||+|.+.++|++|++ +|+..|+|  +.|+|..+..
T Consensus        19 tl~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~-----~~~~afV~f~~~~~A~~A~~~l~~~~i~g~~~~l~v~~ak~   92 (97)
T d1whya_          19 RLWVGGLGPNTSLAALAREFDRFGSIRTIDHVK-----GDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKS   92 (97)
T ss_dssp             CEEEECCCSSCCHHHHHHHHHTTSCEEEEEECS-----SSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCC
T ss_pred             EEEEcCCCCCCCHHHHHHHHHhhcccceEeeec-----cccEEEeccCCHHHHHHHHHHhCCCEeCCCceEEEEEeCCC
Confidence            5566666666666666665544 4577887753     47899999999999999996 79988876  4688866643

>d1x4fa1 d.58.7.1 (A:8-106) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Matrin 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.60  E-value=7.6e-08  Score=81.68  Aligned_cols=58  Identities=14%  Similarity=0.185  Sum_probs=46.0

Q ss_pred             HHHHhhHhhcccccCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH---hCCCccCceEEEEeccCc
Q psy16116        350 SLLLNTIPGYEQVLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK---RHKHHIDKRYIEVTKANG  415 (612)
Q Consensus       350 ~~~e~~fkeff~~~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~---~ng~~IggR~IeV~~s~~  415 (612)
                      +++.++|+.||   .+.+|++.+     ++|+|||+|++.++|.+|++   .++..++||.|.|..+.+
T Consensus        34 ~~l~~~F~~fG---~V~~v~~~~-----~k~~afV~f~~~~~A~~Ai~~~~~~~~~~~gr~l~V~~s~~   94 (99)
T d1x4fa1          34 SAVLKLAEPYG---KIKNYILMR-----MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEK   94 (99)
T ss_dssp             HHHHTTTTTTS---CCSEEEEET-----TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECS
T ss_pred             HHHHhhhcccc---ceeEEEEee-----cCCcEEEEecchHHHHHHHHHHhcCCceECCEEEEEEEcCC
Confidence            45555555554   488888863     46899999999999999995   678889999999987754

>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Calcipressin-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.57  E-value=2.3e-08  Score=85.94  Aligned_cols=59  Identities=8%  Similarity=-0.084  Sum_probs=46.3

Q ss_pred             HhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccCcc
Q psy16116        353 LNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKANGE  416 (612)
Q Consensus       353 e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~~~  416 (612)
                      ++.|+++|.. +.+.+++++     +++|+|||+|.+.++|.+|++ +|+..|+|+.|+|..+...
T Consensus        24 k~~l~~lF~~~G~i~~~~~~-----k~~~~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a~~~   84 (104)
T d1weya_          24 RAKFESLFRTYDKDTTFQYF-----KSFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQTL   84 (104)
T ss_dssp             HHHHHHHHHTTCSSCEEEEE-----TTTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCCS
T ss_pred             HHHHHHHhcccccceEEEEe-----cCCCEEEEEECCHHHHHHHHHHhcccccCCCEeEEeecccC
Confidence            3445544443 347788876     467899999999999999997 8999999999999877543

>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: HIV Tat-specific factor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=1.6e-07  Score=79.74  Aligned_cols=62  Identities=16%  Similarity=0.156  Sum_probs=48.8

Q ss_pred             HHHHhhHhh-cccccCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccC
Q psy16116        350 SLLLNTIPG-YEQVLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKAN  414 (612)
Q Consensus       350 ~~~e~~fke-ff~~~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~  414 (612)
                      .++++++++ |...+.+..|++..+   +.+|+|||+|++.++|.+|+. +|+..++||.|.|....
T Consensus        30 ~~i~edv~~~~~~~G~V~~v~~~~~---~~~G~~fV~f~~~e~A~~A~~~lng~~~~gr~i~v~~~~   93 (99)
T d2dita1          30 NEIREDLRVECSKFGQIRKLLLFDR---HPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWD   93 (99)
T ss_dssp             HHHHHHHHHHGGGTSCCSEEEEETT---CTTCEEEEECSCHHHHHHHHHHSTTCEETTEECEEEECC
T ss_pred             HHHHHHHHHHhcCcccEEEEeccCC---CCccEEEEEECCHHHHHHHHHHhCCcEECCEEEEEEEeC
Confidence            456666664 444466888877543   567999999999999999996 89999999999996543

>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Matrin 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.42  E-value=1.5e-07  Score=78.27  Aligned_cols=70  Identities=9%  Similarity=0.009  Sum_probs=53.4

Q ss_pred             cceecCCCHH-HHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH---hCCCccCceEEEEeccCc
Q psy16116        341 CPLVQNIWLS-LLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK---RHKHHIDKRYIEVTKANG  415 (612)
Q Consensus       341 ~vlV~nLp~~-~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~---~ng~~IggR~IeV~~s~~  415 (612)
                      +|+|+||+.. .++++|.++|.. |.+.+|.++.     .+++|||+|++.++|.+|++   .++..++||.|.|..+..
T Consensus        10 ~v~v~nl~~~~~t~~eL~~lF~~fG~I~~i~i~~-----~k~~afV~f~~~~~A~~A~~~l~~~~~~~~gr~l~V~~s~~   84 (89)
T d1x4da1          10 VVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILN-----KINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQK   84 (89)
T ss_dssp             EEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECS-----SSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECC
T ss_pred             EEEEECCCCCcCCHHHHHHHHHhhCCeEEEEeec-----cceEEEEEEcchhhHHHHHHHHhhCCCccCCceEEEEECCC
Confidence            3456667654 566666666654 5588888864     35799999999999999996   367789999999987754

>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Lupus LA protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=2.9e-07  Score=79.83  Aligned_cols=65  Identities=11%  Similarity=-0.008  Sum_probs=49.4

Q ss_pred             cceecCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCH-HHHHHHHH-hCCCccCceEEEE
Q psy16116        341 CPLVQNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQ-EHRDMALK-RHKHHIDKRYIEV  410 (612)
Q Consensus       341 ~vlV~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~-EdA~kAL~-~ng~~IggR~IeV  410 (612)
                      ..||+||+.+.++++|+++|.. +.|.+|.|++     .+|||||.|.+. ++|.+|+. +++..+.++.+.|
T Consensus        13 ~~fvgnL~~~~tee~Lk~~F~~fG~V~~v~i~~-----~kg~gfV~F~~~~~~A~~a~~~~~~~~l~~~~~~v   80 (113)
T d1owxa_          13 LKFSGDLDDQTCREDLHILFSNHGEIKWIDFVR-----GAKEGIILFKEKAKEALGKAKDANNGNLQLRNKEV   80 (113)
T ss_dssp             EEEEESCCSSCCHHHHHHHTCSSCCEEEEECCT-----TCSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSE
T ss_pred             EEEECCCCCCCCHHHHHHHHHhcCChheEEEec-----CCceEEEEecCcHHHHHHHHHHhcCCceecCceEE
Confidence            4478899988888888887765 6688888863     479999999996 67888886 6776666554433

>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8, ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Alkylation repair AlkB homolog 8, ALKBH8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=6.8e-07  Score=76.06  Aligned_cols=54  Identities=7%  Similarity=-0.027  Sum_probs=38.6

Q ss_pred             cCCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCcc
Q psy16116        345 QNIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHI  403 (612)
Q Consensus       345 ~nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~I  403 (612)
                      +||+.+.++++|++.|.. |.+.+|++..     .+|||||+|.+.++|.+|++ +||..|
T Consensus        26 g~L~~~vte~~L~~~F~~~G~i~~i~~~~-----~k~~aFV~f~~~e~A~~A~~~lng~~i   81 (101)
T d2cq2a1          26 GGLGNGVSRNQLLPVLEKCGLVDALLMPP-----NKPYSFARYRTTEESKRAYVTLNGKEV   81 (101)
T ss_dssp             CTGGGTCCHHHHHHHHHHHSCEEEEECCT-----TCSCEEEEESSHHHHHHHHHHTTTCEE
T ss_pred             CCCCCCCCHHHHHHHHHhhCcccEEeecc-----CccEEEEEECCHHHHHHHHHHhCCCCC
Confidence            446655555555554443 4577777753     46899999999999999996 777665

>d1ufwa_ d.58.7.1 (A:) Synaptojanin 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Synaptojanin 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.89  E-value=0.023  Score=46.80  Aligned_cols=69  Identities=10%  Similarity=0.069  Sum_probs=53.0

Q ss_pred             cccEEEEeCCCCCCCH---------HHHHHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhC
Q psy16116        437 AQVIIRMRGLPYECTA---------KQVIDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALSKH  507 (612)
Q Consensus       437 ~~~~VfV~nLP~s~te---------~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~~~  507 (612)
                      .+.+|.|.=..++..+         .+|.+-|..||    +|    .-||++.       +--+|+|.+-+.|-+||+++
T Consensus        14 pDgTIvV~i~~~s~e~~~~FDe~l~~~Llq~l~~~G----eV----iLvRFv~-------d~mwVTF~dG~SAL~al~l~   78 (95)
T d1ufwa_          14 LDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYG----TI----VLVRINQ-------GQMLVTFADSHSALSVLDVD   78 (95)
T ss_dssp             TTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHS----CC----SEEEEET-------TEEEEECSCSHHHHHHHHGG
T ss_pred             CCcEEEEEeccCCccccccCCHHHHHHHHHHHhhCC----eE----EEEEEeC-------CeEEEEECCcHHHHHHhccC
Confidence            3455666555444433         47888899999    33    3477764       36999999999999999999


Q ss_pred             CcccCCEEEEEEe
Q psy16116        508 KESIGIRYIELFR  520 (612)
Q Consensus       508 ~~~iggR~IeV~~  520 (612)
                      +.++.||.|.|..
T Consensus        79 g~~v~G~~l~It~   91 (95)
T d1ufwa_          79 GMKVKGRAVKISG   91 (95)
T ss_dssp             GSEETTEEEEEEC
T ss_pred             CeEEcceEEEEec
Confidence            9999999999875

>d2dgxa1 d.58.7.1 (A:563-635) Limkain-b1, LKAP {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Limkain-b1, LKAP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.34  E-value=0.075  Score=41.63  Aligned_cols=64  Identities=22%  Similarity=0.211  Sum_probs=49.6

Q ss_pred             CCCHHHH----HHHHhcCCCCccccccCceeEEEeeCCCCCceeEEEEEeCCHHHHHHHHH-hCCcccCCEEEEEEecc
Q psy16116        449 ECTAKQV----IDFFEAGTENSCNVMDGEEGVLFVKKPDGKATGDAFVLFEKEEEADKALS-KHKESIGIRYIELFRST  522 (612)
Q Consensus       449 s~te~dL----refF~~~Gi~~~~Ivd~v~~I~i~~d~~GrskG~AFV~F~s~edA~kAL~-~~~~~iggR~IeV~~as  522 (612)
                      ..++.+|    .+.|++++        .+.++.|..-.+|..  .|-|...+..||.-|+. +|+..||+++|.|..++
T Consensus         3 ~L~~kelqq~L~~~f~~h~--------~V~sv~l~~~~dg~~--~A~V~v~~~q~A~~~v~~LhR~KiG~KRI~Vs~~~   71 (73)
T d2dgxa1           3 RLSRKELQQLLQEAFARHG--------KVKSVELSPHTDYQL--KAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLAT   71 (73)
T ss_dssp             TSCHHHHHHHHHHHHHHHS--------CEEEEEECSCCSTTC--CEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred             cCCHHHHHHHHHHHHHhhe--------eEEEEEEEeccCCcE--EEEEEcCCHHHHHHHHHHHHHHhcCCeEEEEEEec
Confidence            3445554    45788888        345677765556655  59999999999999996 79999999999998764

>d2dgxa1 d.58.7.1 (A:563-635) Limkain-b1, LKAP {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Limkain-b1, LKAP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.26  E-value=0.16  Score=39.78  Aligned_cols=67  Identities=16%  Similarity=0.048  Sum_probs=52.4

Q ss_pred             CCCHHHHHhhHhhcccc-cCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHH-hCCCccCceEEEEeccC
Q psy16116        346 NIWLSLLLNTIPGYEQV-LGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALK-RHKHHIDKRYIEVTKAN  414 (612)
Q Consensus       346 nLp~~~~e~~fkeff~~-~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~-~ng~~IggR~IeV~~s~  414 (612)
                      +|+..++++.+.+-|.. +.+..+.+....+|..  .|-|...+..||..|+. +++..||++.|.|..++
T Consensus         3 ~L~~kelqq~L~~~f~~h~~V~sv~l~~~~dg~~--~A~V~v~~~q~A~~~v~~LhR~KiG~KRI~Vs~~~   71 (73)
T d2dgxa1           3 RLSRKELQQLLQEAFARHGKVKSVELSPHTDYQL--KAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLAT   71 (73)
T ss_dssp             TSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTC--CEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred             cCCHHHHHHHHHHHHHhheeEEEEEEEeccCCcE--EEEEEcCCHHHHHHHHHHHHHHhcCCeEEEEEEec
Confidence            45666676666655543 4577888876666655  79999999999999996 89999999999997664

>d1uw4a_ d.58.7.4 (A:) RNA processing protein UPF3x, RRM domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Smg-4/UPF3
domain: RNA processing protein UPF3x, RRM domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.56  E-value=0.18  Score=41.18  Aligned_cols=64  Identities=14%  Similarity=0.139  Sum_probs=49.1

Q ss_pred             EEEEeCCCCCCCHHHHHHHHhcCCCCccccccCceeEEEeeCC--CCC-ceeEEEEEeCCHHHHHHHHHh-CCccc
Q psy16116        440 IIRMRGLPYECTAKQVIDFFEAGTENSCNVMDGEEGVLFVKKP--DGK-ATGDAFVLFEKEEEADKALSK-HKESI  511 (612)
Q Consensus       440 ~VfV~nLP~s~te~dLrefF~~~Gi~~~~Ivd~v~~I~i~~d~--~Gr-skG~AFV~F~s~edA~kAL~~-~~~~i  511 (612)
                      .|.||.||.+.||+++.+-++..+        ..+.......+  .+. .--.|||.|.+.|++..-.+. +|+.+
T Consensus         3 KvVvRrLPP~Lte~~F~~~l~~~~--------~~d~~~f~~Gk~s~~~~~~SRAYi~F~~~~~v~~F~~~f~g~~F   70 (91)
T d1uw4a_           3 KVVIRRLPPTLTKEQLQEHLQPMP--------EHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVF   70 (91)
T ss_dssp             EEEEEEECTTCCHHHHHHHHCSCC--------CEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEE
T ss_pred             eEEEecCCCCCCHHHHHHHhCCcC--------ceEEEEEeCCCcCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEE
Confidence            599999999999999999999877        44566666543  222 235799999999998887763 66654

>d1ufwa_ d.58.7.1 (A:) Synaptojanin 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Synaptojanin 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.83  E-value=0.22  Score=40.75  Aligned_cols=53  Identities=13%  Similarity=0.144  Sum_probs=40.8

Q ss_pred             HhhHhhcccccCeeeEEEeeCCCCCCcceEEEEeCCHHHHHHHHHhCCCccCceEEEEec
Q psy16116        353 LNTIPGYEQVLGLGGVALCLSAFGRRNGEAIVRFIDQEHRDMALKRHKHHIDKRYIEVTK  412 (612)
Q Consensus       353 e~~fkeff~~~~v~~V~ii~d~~GrsrG~AFVeF~S~EdA~kAL~~ng~~IggR~IeV~~  412 (612)
                      .+.+.+|...+.+.-||++.       +.-.|+|.+-+.|.+||++++..+.||.|.|..
T Consensus        39 ~~Llq~l~~~GeViLvRFv~-------d~mwVTF~dG~SAL~al~l~g~~v~G~~l~It~   91 (95)
T d1ufwa_          39 TELMQTLGSYGTIVLVRINQ-------GQMLVTFADSHSALSVLDVDGMKVKGRAVKISG   91 (95)
T ss_dssp             HHHHHHHHHHSCCSEEEEET-------TEEEEECSCSHHHHHHHHGGGSEETTEEEEEEC
T ss_pred             HHHHHHHhhCCeEEEEEEeC-------CeEEEEECCcHHHHHHhccCCeEEcceEEEEec
Confidence            33333444434467777753       477999999999999999999999999999854