Psyllid ID: psy16124

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320---
MSTHNRWPSIDEVNLLSMGRRQCVDIALDAQITPWYSAQCPGEMINYYILSLAMADLLFGLLVVPLSVYPALAQDWVYGNVICRIVGYIEVTLWVICNYTFMWMSVDRYLAVRKPLRYETVQTKTRCQCWMAFTWISSAMVCCPPLLDFSDPKYDEDGYICMLDWGGMAAYTITLGCLVLGPSLITIVYTYSYIFSMMRKLKSGPPIHDKEYATALAENLSNPSHNMSFSLIMTFWLSWLPYIVVKLYEYLSGHIISFIPQLHFLVLHFLVVWLGILNSVWKGIVLILMSPQFRIMLRLLCISVCCKQKSNWDVELIGMDSDD
ccccccccHHHHHHHHHHHHHHHHHHHHHHEEEEEEEcccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccEEEEHHHHHHHHHHccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHcHHHHHHHccccHHHHHHHHHHHcccccccccccccccccccccc
cccccccccccHHHHHHHHHHHHHHHHHHHEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEccccccccccHHHHHHHHHHHHHHHHHHHccHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHcccEEEEEccHHHHHHHHHHHcHcccccccccccccccccccc
msthnrwpsidevnllsmgrRQCVDIAldaqitpwysaqcpgeMINYYILSLAMADLLFGLLVvplsvypalaqdwvyGNVICRIVGYIEVTLWVICNYTFMWMSVDRYLAVRKPLRYETVQTKTRCQCWMAFTWISsamvccpplldfsdpkydedgyicmldwggMAAYTITLGClvlgpsliTIVYTYSYIFSMMRklksgppihdKEYATALAenlsnpshnmsFSLIMTFWLSWLPYIVVKLYEYLSGHIISFIPQLHFLVLHFLVVWLGILNSVWKGIVLILMSPQFRIMLRLLCISVCckqksnwdveligmdsdd
msthnrwpsidEVNLLSMGRRQCVDIALDAQITPWYSAQCPGEMINYYILSLAMADLLFGLLVVPLSVYPALAQDWVYGNVICRIVGYIEVTLWVICNYTFMWMSVDRYLAVRKPLRYETVQTKTRCQCWMAFTWISSAMVCCPPLLDFSDPKYDEDGYICMLDWGGMAAYTITLGCLVLGPSLITIVYTYSYIFSMMRKLKSGPPIHDKEYATALAENLSNPSHNMSFSLIMTFWLSWLPYIVVKLYEYLSGHIISFIPQLHFLVLHFLVVWLGILNSVWKGIVLILMSPQFRIMLRLLCISVCckqksnwdveligmdsdd
MSTHNRWPSIDEVNLLSMGRRQCVDIALDAQITPWYSAQCPGEMINYYILSLAMADLLFGLLVVPLSVYPALAQDWVYGNVICRIVGYIEVTLWVICNYTFMWMSVDRYLAVRKPLRYETVQTKTRCQCWMAFTWISSAMVCCPPLLDFSDPKYDEDGYICMLDWGGMAAYTITLGCLVLGPSLITIVYTYSYIFSMMRKLKSGPPIHDKEYATALAENLSNPSHNMSFSLIMTFWLSWLPYIVVKLYEYLSGHIISFIPQlhflvlhflvvWLGILNSVWKGIVLILMSPQFRIMLRLLCISVCCKQKSNWDVELIGMDSDD
*********IDEVNLLSMGRRQCVDIALDAQITPWYSAQCPGEMINYYILSLAMADLLFGLLVVPLSVYPALAQDWVYGNVICRIVGYIEVTLWVICNYTFMWMSVDRYLAVRKPLRYETVQTKTRCQCWMAFTWISSAMVCCPPLLDFSDPKYDEDGYICMLDWGGMAAYTITLGCLVLGPSLITIVYTYSYIFSMMRKLK*********YATAL*********NMSFSLIMTFWLSWLPYIVVKLYEYLSGHIISFIPQLHFLVLHFLVVWLGILNSVWKGIVLILMSPQFRIMLRLLCISVCCKQKSNWDVELIG*****
*****RWPSIDEVNLLSMGRRQCVDIALDAQITPWYSAQCPGEMINYYILSLAMADLLFGLLVVPLSVYPALAQDWVYGNVICRIVGYIEVTLWVICNYTFMWMSVDRYLAVRKPLRYETVQTKTRCQCWMAFTWISSAMVCCPPLLDFSDPKYDEDGYICMLDWGGMAAYTITLGCLVLGPSLITIVYTYSYIFSMM***************************NMSFSLIMTFWLSWLPYIVVKLYEYLSGHIISFIPQLHFLVLHFLVVWLGILNSVWKGIVLILMSPQFRIMLRLLCISV*******************
********SIDEVNLLSMGRRQCVDIALDAQITPWYSAQCPGEMINYYILSLAMADLLFGLLVVPLSVYPALAQDWVYGNVICRIVGYIEVTLWVICNYTFMWMSVDRYLAVRKPLRYETVQTKTRCQCWMAFTWISSAMVCCPPLLDFSDPKYDEDGYICMLDWGGMAAYTITLGCLVLGPSLITIVYTYSYIFSMMRKLKSGPPIHDKEYATALAENLSNPSHNMSFSLIMTFWLSWLPYIVVKLYEYLSGHIISFIPQLHFLVLHFLVVWLGILNSVWKGIVLILMSPQFRIMLRLLCISVCCKQKSNWDVELIGMDSDD
****NRWPSIDEVNLLSMGRRQCVDIALDAQITPWYSAQCPGEMINYYILSLAMADLLFGLLVVPLSVYPALAQDWVYGNVICRIVGYIEVTLWVICNYTFMWMSVDRYLAVRKPLRYETVQTKTRCQCWMAFTWISSAMVCCPPLLDFSDPKYDEDGYICMLDWGGMAAYTITLGCLVLGPSLITIVYTYSYIFSMMRKLKSGPPIHDKE*A**LAENLSNPSHNMSFSLIMTFWLSWLPYIVVKLYEYLSGHIISFIPQLHFLVLHFLVVWLGILNSVWKGIVLILMSPQFRIMLRLLCISVCCKQ***************
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MSTHNRWPSIDEVNLLSMGRRQCVDIALDAQITPWYSAQCPGEMINYYILSLAMADLLFGLLVVPLSVYPALAQDWVYGNVICRIVGYIEVTLWVICNYTFMWMSVDRYLAVRKPLRYETVQTKTRCQCWMAFTWISSAMVCCPPLLDFSDPKYDEDGYICMLDWGGMAAYTITLGCLVLGPSLITIVYTYSYIFSMMRKLKSGPPIHDKEYATALAENLSNPSHNMSFSLIMTFWLSWLPYIVVKLYEYLSGHIISFIPQLHFLVLHFLVVWLGILNSVWKGIVLILMSPQFRIMLRLLCISVCCKQKSNWDVELIGMDSDD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query323 2.2.26 [Sep-21-2011]
P0C5J4361 Probable G-protein couple yes N/A 0.804 0.720 0.284 3e-21
Q9Y2T5361 Probable G-protein couple yes N/A 0.780 0.698 0.272 9e-20
A6QLE7361 Probable G-protein couple yes N/A 0.804 0.720 0.274 1e-19
O42574385 Beta-1 adrenergic recepto N/A N/A 0.811 0.680 0.285 1e-18
Q9TST4398 Beta-3 adrenergic recepto N/A N/A 0.829 0.673 0.274 4e-18
Q28997418 Beta-2 adrenergic recepto no N/A 0.835 0.645 0.257 5e-18
P54833415 Beta-2 adrenergic recepto no N/A 0.777 0.604 0.260 2e-17
Q9TST5418 Beta-2 adrenergic recepto N/A N/A 0.777 0.600 0.260 2e-17
P43141428 Beta-4C adrenergic recept no N/A 0.804 0.607 0.275 4e-17
Q4KWL2418 Beta-2 adrenergic recepto N/A N/A 0.777 0.600 0.267 5e-17
>sp|P0C5J4|GPR52_MOUSE Probable G-protein coupled receptor 52 OS=Mus musculus GN=Gpr52 PE=3 SV=1 Back     alignment and function desciption
 Score =  102 bits (254), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 80/281 (28%), Positives = 129/281 (45%), Gaps = 21/281 (7%)

Query: 46  NYYILSLAMADLLFGLLVVPLSVYPALAQDWVYGNVICRIVGYIEVTLWVICNYTFMWMS 105
           +Y+I ++A ADLL G+  +  ++        V+ ++ C++ GYI   L  +       +S
Sbjct: 77  SYFIQTMAYADLLVGVTCLVPTLSLLHYSTGVHESLTCQVFGYIISVLKSVSMACLACIS 136

Query: 106 VDRYLAVRKPLRYETVQTKTRCQCWMAFTWISSAMVCCPPLLDFSDPKYDEDGYI-CMLD 164
           VDRYLA+ KPL Y  + T  R +  +   WI S ++  P    +  P Y  D +  C   
Sbjct: 137 VDRYLAITKPLSYNQLVTPCRLRICIIMIWIYSCLIFLPSFFGWGKPGYHGDIFEWCATS 196

Query: 165 WGGMAAYTITLGCLVLGPSLITIVYTYSYIFSMMRK-------LKSGPPIHDKEYATALA 217
           W   A +T  + CL+  P+ + + +TY +IF + R+        ++  P H+ E +    
Sbjct: 197 WLTSAYFTCFIVCLLYAPAALVVCFTYFHIFKICRQHTKEINDRRARFPSHEVEASREAG 256

Query: 218 ENLSNPSHNMSFSLIMTFWLSWLPYIVVKLYEYLSGHIISFIPQLHFLVLHFLVVWLGIL 277
            +       + F +   F++ WLPYI+  L E  S  +      L    L FL  WL I 
Sbjct: 257 HSPDRRYAMVLFRITSVFYMLWLPYIIYFLLE--SSRV------LDNPTLSFLTTWLAIS 308

Query: 278 NSVWKGIVLILMSPQFRIMLRLL----CIS-VCCKQKSNWD 313
           NS    ++  L +  FR+ LR L    C S VC K +   D
Sbjct: 309 NSFCNCVIYSLSNSVFRLGLRRLSETMCTSCVCAKDQEAQD 349
Orphan receptor.
Mus musculus (taxid: 10090)
>sp|Q9Y2T5|GPR52_HUMAN Probable G-protein coupled receptor 52 OS=Homo sapiens GN=GPR52 PE=2 SV=2 Back     alignment and function description
>sp|A6QLE7|GPR52_BOVIN Probable G-protein coupled receptor 52 OS=Bos taurus GN=GPR52 PE=2 SV=1 Back     alignment and function description
>sp|O42574|ADRB1_XENLA Beta-1 adrenergic receptor OS=Xenopus laevis GN=adrb1 PE=2 SV=1 Back     alignment and function description
>sp|Q9TST4|ADRB3_FELCA Beta-3 adrenergic receptor OS=Felis catus GN=ADRB3 PE=3 SV=1 Back     alignment and function description
>sp|Q28997|ADRB2_PIG Beta-2 adrenergic receptor OS=Sus scrofa GN=ADRB2 PE=2 SV=2 Back     alignment and function description
>sp|P54833|ADRB2_CANFA Beta-2 adrenergic receptor OS=Canis familiaris GN=ADRB2 PE=2 SV=1 Back     alignment and function description
>sp|Q9TST5|ADRB2_FELCA Beta-2 adrenergic receptor OS=Felis catus GN=ADRB2 PE=3 SV=1 Back     alignment and function description
>sp|P43141|ADB4C_MELGA Beta-4C adrenergic receptor OS=Meleagris gallopavo GN=ADRB4C PE=2 SV=1 Back     alignment and function description
>sp|Q4KWL2|ADRB2_TSCTR Beta-2 adrenergic receptor OS=Tscherskia triton GN=ADRB2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query323
91088793336 PREDICTED: similar to DopEcR CG18314-PA 0.885 0.851 0.671 1e-115
195374606322 GJ12720 [Drosophila virilis] gi|19415325 0.885 0.888 0.636 1e-109
195011709322 GH15815 [Drosophila grimshawi] gi|193896 0.885 0.888 0.630 1e-109
195440276322 GK11057 [Drosophila willistoni] gi|19416 0.885 0.888 0.633 1e-108
195096897299 GH22243 [Drosophila grimshawi] gi|193891 0.885 0.956 0.630 1e-108
24657582322 Dopamine/Ecdysteroid receptor, isoform A 0.885 0.888 0.633 1e-108
195125163322 GI12597 [Drosophila mojavensis] gi|19391 0.885 0.888 0.630 1e-108
387762414326 dopamine/ecdysteroid receptor [Gryllus b 0.885 0.877 0.660 1e-108
125977196322 GA14883 [Drosophila pseudoobscura pseudo 0.885 0.888 0.630 1e-108
17861614324 GH15292p [Drosophila melanogaster] 0.885 0.882 0.623 1e-107
>gi|91088793|ref|XP_968380.1| PREDICTED: similar to DopEcR CG18314-PA [Tribolium castaneum] gi|270012800|gb|EFA09248.1| hypothetical protein TcasGA2_TC006457 [Tribolium castaneum] Back     alignment and taxonomy information
 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 196/292 (67%), Positives = 241/292 (82%), Gaps = 6/292 (2%)

Query: 32  ITPWYSAQCPGEMINYYILSLAMADLLFGLLVVPLSVYPALAQDWVYGNVICRIVGYIEV 91
           I  + + + P E+IN Y+LSLA+ADLL GLLVVPLSVYPA+ ++WVYG+++CR+VGY+EV
Sbjct: 51  IATFLNFRGPSEVINCYLLSLAVADLLCGLLVVPLSVYPAVVREWVYGDIVCRLVGYLEV 110

Query: 92  TLWVICNYTFMWMSVDRYLAVRKPLRYETVQTKTRCQCWMAFTWISSAMVCCPPLLDFSD 151
           TLW +  YTFMW+SVDRYLAVRKPLRYET+QTKTRCQCWMAFTWIS+AM+CCPPLL F+ 
Sbjct: 111 TLWAVTVYTFMWISVDRYLAVRKPLRYETLQTKTRCQCWMAFTWISAAMLCCPPLLGFNQ 170

Query: 152 PKYDEDGYICMLDWGGMAAYTITLGCLVLGPSLITIVYTYSYIFSMMRKLKSGPPIHDKE 211
           P +D+D YICMLDWG MAAY++TL  LVLGPSLITIVYTY+YIF+M+RKL+SG   HDKE
Sbjct: 171 PVFDKDAYICMLDWGSMAAYSVTLSILVLGPSLITIVYTYTYIFNMLRKLRSGYAFHDKE 230

Query: 212 YATALAENLSNPSHNMSFSLIMTFWLSWLPYIVVKLYEYLSGHIISFIPQLHFLVLHFLV 271
           YATAL+ENLSNPSH MSFSL++ FW+SW PYI VKLYEY +G       +L    LHF +
Sbjct: 231 YATALSENLSNPSHLMSFSLVVAFWVSWTPYIGVKLYEYFTG------VKLQVQFLHFGI 284

Query: 272 VWLGILNSVWKGIVLILMSPQFRIMLRLLCISVCCKQKSNWDVELIGMDSDD 323
           VWLG LNS WK ++LI MSPQFR+ LR+ C+++CC+ K     ELIGM++DD
Sbjct: 285 VWLGFLNSFWKSMILITMSPQFRLALRIFCMTICCRYKGRMQAELIGMEADD 336

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|195374606|ref|XP_002046095.1| GJ12720 [Drosophila virilis] gi|194153253|gb|EDW68437.1| GJ12720 [Drosophila virilis] Back     alignment and taxonomy information
>gi|195011709|ref|XP_001983280.1| GH15815 [Drosophila grimshawi] gi|193896762|gb|EDV95628.1| GH15815 [Drosophila grimshawi] Back     alignment and taxonomy information
>gi|195440276|ref|XP_002067968.1| GK11057 [Drosophila willistoni] gi|194164053|gb|EDW78954.1| GK11057 [Drosophila willistoni] Back     alignment and taxonomy information
>gi|195096897|ref|XP_001997893.1| GH22243 [Drosophila grimshawi] gi|193891583|gb|EDV90449.1| GH22243 [Drosophila grimshawi] Back     alignment and taxonomy information
>gi|24657582|ref|NP_647897.2| Dopamine/Ecdysteroid receptor, isoform A [Drosophila melanogaster] gi|62471884|ref|NP_001014559.1| Dopamine/Ecdysteroid receptor, isoform C [Drosophila melanogaster] gi|62471897|ref|NP_001014560.1| Dopamine/Ecdysteroid receptor, isoform B [Drosophila melanogaster] gi|194866490|ref|XP_001971893.1| GG14190 [Drosophila erecta] gi|195337449|ref|XP_002035341.1| GM13980 [Drosophila sechellia] gi|195491748|ref|XP_002093696.1| GE20620 [Drosophila yakuba] gi|195587762|ref|XP_002083630.1| GD13262 [Drosophila simulans] gi|7292490|gb|AAF47893.1| Dopamine/Ecdysteroid receptor, isoform A [Drosophila melanogaster] gi|57335422|emb|CAH10219.1| G-protein coupled receptor [Drosophila melanogaster] gi|61678444|gb|AAX52732.1| Dopamine/Ecdysteroid receptor, isoform B [Drosophila melanogaster] gi|61678445|gb|AAX52733.1| Dopamine/Ecdysteroid receptor, isoform C [Drosophila melanogaster] gi|190653676|gb|EDV50919.1| GG14190 [Drosophila erecta] gi|194128434|gb|EDW50477.1| GM13980 [Drosophila sechellia] gi|194179797|gb|EDW93408.1| GE20620 [Drosophila yakuba] gi|194195639|gb|EDX09215.1| GD13262 [Drosophila simulans] Back     alignment and taxonomy information
>gi|195125163|ref|XP_002007051.1| GI12597 [Drosophila mojavensis] gi|193918660|gb|EDW17527.1| GI12597 [Drosophila mojavensis] Back     alignment and taxonomy information
>gi|387762414|dbj|BAM15638.1| dopamine/ecdysteroid receptor [Gryllus bimaculatus] Back     alignment and taxonomy information
>gi|125977196|ref|XP_001352631.1| GA14883 [Drosophila pseudoobscura pseudoobscura] gi|54641379|gb|EAL30129.1| GA14883 [Drosophila pseudoobscura pseudoobscura] Back     alignment and taxonomy information
>gi|17861614|gb|AAL39284.1| GH15292p [Drosophila melanogaster] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query323
FB|FBgn0035538324 DopEcR "Dopamine/Ecdysteroid r 0.857 0.854 0.628 1.1e-101
WB|WBGene00010329318 F59D12.1 [Caenorhabditis elega 0.934 0.949 0.323 6.6e-42
MGI|MGI:3643278361 Gpr52 "G protein-coupled recep 0.798 0.714 0.286 4.8e-23
ZFIN|ZDB-GENE-050208-696370 si:ch211-197g15.11 "si:ch211-1 0.767 0.670 0.290 6.1e-23
UNIPROTKB|F1S723361 GPR52 "Uncharacterized protein 0.767 0.686 0.283 9e-22
UNIPROTKB|G5E6I3361 GPR52 "Probable G-protein-coup 0.792 0.709 0.284 1.5e-21
UNIPROTKB|Q9Y2T5361 GPR52 "Probable G-protein coup 0.773 0.692 0.274 1.5e-21
UNIPROTKB|A6QLE7361 GPR52 "Probable G-protein coup 0.792 0.709 0.284 1.9e-21
UNIPROTKB|F1SKU6349 GPR21 "Uncharacterized protein 0.767 0.710 0.247 1.5e-19
UNIPROTKB|F1P1H8329 GPR52 "Uncharacterized protein 0.656 0.644 0.286 4e-19
FB|FBgn0035538 DopEcR "Dopamine/Ecdysteroid receptor" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 1008 (359.9 bits), Expect = 1.1e-101, P = 1.1e-101
 Identities = 178/283 (62%), Positives = 222/283 (78%)

Query:    41 PGEMINYYILSLAMADLLFGLLVVPLSVYPALAQDWVYGNVICRIVGYIEVTLWVICNYT 100
             P E+INYY+LSLA+ADLL GLLVVP SVYPAL  +W+YG+++CR  GY+EVTLW +  YT
Sbjct:    46 PTEVINYYLLSLAIADLLCGLLVVPFSVYPALTGEWMYGDIVCRFTGYLEVTLWAVSVYT 105

Query:   101 FMWMSVDRYLAVRKPLRYETVQTKTRCQCWMAFTWISSAMVCCPPLLDFSDPKYDEDGYI 160
             FMW+SVDRYLAVRKPLRYETVQTKTRCQCWM FTWIS+A++CCPP+L +S P  +   +I
Sbjct:   106 FMWISVDRYLAVRKPLRYETVQTKTRCQCWMVFTWISAALLCCPPILGYSMPIENNMTHI 165

Query:   161 CMLDWGGMAAYTITLGCLVLGPSLITIVYTYSYIFSMMRKLKSGPPIHDKEYATALAENL 220
             CMLDWG MAAY+ TL  LVLGPSLI+IV+ Y YIF MMRK++SG PIHDKEYATALAE+L
Sbjct:   166 CMLDWGNMAAYSATLAILVLGPSLISIVHNYGYIFVMMRKIRSGEPIHDKEYATALAESL 225

Query:   221 SNPSHNMSFSLIMTFWLSWLPYIVVKLYEYLSGHIISFIPQXXXXXXXXXXXWLGILNSV 280
             SNP H MSF+L+  FW+SWLP+I+++LYE ++G +I                W+GILNS 
Sbjct:   226 SNPGHMMSFALVFAFWVSWLPWILLRLYEVVTGDVIQ------STLINFAVVWIGILNSF 279

Query:   281 WKGIVLILMSPQFRIMLRLLCISVCCKQKSNWDVELIGMDSDD 323
             WK +++  MSPQFRI LR+ C+++CCK K     EL+G+D DD
Sbjct:   280 WKILIMTSMSPQFRIALRVFCLTICCKTKGRLQAELVGLDPDD 322
GO:0016021 "integral to membrane" evidence=IEA;ISS
GO:0008227 "G-protein coupled amine receptor activity" evidence=ISS
GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA;ISS
GO:0004930 "G-protein coupled receptor activity" evidence=IEA
GO:0035075 "response to ecdysone" evidence=IDA
GO:0009267 "cellular response to starvation" evidence=IDA
GO:0071329 "cellular response to sucrose stimulus" evidence=IDA
GO:0009744 "response to sucrose stimulus" evidence=IMP
GO:0042594 "response to starvation" evidence=IMP
WB|WBGene00010329 F59D12.1 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
MGI|MGI:3643278 Gpr52 "G protein-coupled receptor 52" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050208-696 si:ch211-197g15.11 "si:ch211-197g15.11" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1S723 GPR52 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|G5E6I3 GPR52 "Probable G-protein-coupled receptor 52" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q9Y2T5 GPR52 "Probable G-protein coupled receptor 52" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|A6QLE7 GPR52 "Probable G-protein coupled receptor 52" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1SKU6 GPR21 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1P1H8 GPR52 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query323
pfam00001251 pfam00001, 7tm_1, 7 transmembrane receptor (rhodop 2e-27
PHA03087335 PHA03087, PHA03087, G protein-coupled chemokine re 1e-11
PHA02638417 PHA02638, PHA02638, CC chemokine receptor-like pro 7e-05
>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family) Back     alignment and domain information 
 Score =  107 bits (268), Expect = 2e-27
 Identities = 65/241 (26%), Positives = 112/241 (46%), Gaps = 11/241 (4%)

Query: 44  MINYYILSLAMADLLFGLLVVPLSVYPALAQDWVYGNVICRIVGYIEVTLWV--ICNYTF 101
             N ++L+LA+ADLLF L + P ++Y  +  DW +G+ +C++VG++ V      I   T 
Sbjct: 12  PTNIFLLNLAVADLLFLLTLPPWALYYLVGGDWPFGDALCKLVGFLFVVNGYASILLLTA 71

Query: 102 MWMSVDRYLAVRKPLRYETVQTKTRCQCWMAFTWISSAMVCCPPLLDFS-DPKYDEDGYI 160
             +S+DRYLA+  PLRY  ++T  R +  +   W+ + ++  PPLL        + +   
Sbjct: 72  --ISIDRYLAIVHPLRYRRIRTPRRAKVLILVVWVLALLLSLPPLLFSWLRTVEEGNVTT 129

Query: 161 CMLDWG-GMAAYTITLGCLVLGPSLITIVYTYSYIFSMMRKLKSGPPIHDKEYATALAEN 219
           C++D+       + TL   +LG  L  +V    Y   +    K       +  A   +  
Sbjct: 130 CLIDFPEESTKRSYTLLSTLLGFVLPLLVILVCYTLILRTLRKRARSGASQARAKRSSSK 189

Query: 220 LSNPSHNMSFSLIMTFWLSWLPYIVVKLYEYLSGHIISFIPQLHFLVLHFLVVWLGILNS 279
               +  M   +++ F L WLPY +V L + L    I  +     L+     +WL  +NS
Sbjct: 190 ERKAAK-MLLVVVVVFVLCWLPYHIVLLLDSLCPLSIWRLLPTALLIT----LWLAYVNS 244

Query: 280 V 280
            
Sbjct: 245 C 245

This family contains, amongst other G-protein-coupled receptors (GCPRs), members of the opsin family, which have been considered to be typical members of the rhodopsin superfamily. They share several motifs, mainly the seven transmembrane helices, GCPRs of the rhodopsin superfamily. All opsins bind a chromophore, such as 11-cis-retinal. The function of most opsins other than the photoisomerases is split into two steps: light absorption and G-protein activation. Photoisomerases, on the other hand, are not coupled to G-proteins - they are thought to generate and supply the chromophore that is used by visual opsins. Length = 251
>gnl|CDD|222976 PHA03087, PHA03087, G protein-coupled chemokine receptor-like protein; Provisional Back     alignment and domain information
>gnl|CDD|165021 PHA02638, PHA02638, CC chemokine receptor-like protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 323
KOG4219|consensus423 100.0
PHA03234338 DNA packaging protein UL33; Provisional 100.0
KOG4220|consensus503 100.0
PHA02834323 chemokine receptor-like protein; Provisional 100.0
PHA02638417 CC chemokine receptor-like protein; Provisional 100.0
PHA03235409 DNA packaging protein UL33; Provisional 100.0
PHA03087335 G protein-coupled chemokine receptor-like protein; 100.0
PF00001257 7tm_1: 7 transmembrane receptor (rhodopsin family) 100.0
KOG2087|consensus363 99.95
PF10320257 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemorecep 99.94
PF10324318 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemorecept 99.92
PF10328274 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemorecept 99.85
PF10323283 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemorecept 99.76
PF05296303 TAS2R: Mammalian taste receptor protein (TAS2R); I 99.7
PF05462303 Dicty_CAR: Slime mold cyclic AMP receptor 99.67
PF10321313 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemorecept 99.54
PF03402265 V1R: Vomeronasal organ pheromone receptor family, 99.39
PF10317292 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemorecept 99.32
PF11710201 Git3: G protein-coupled glucose receptor regulatin 99.26
PF10326307 7TM_GPCR_Str: Serpentine type 7TM GPCR chemorecept 99.02
PF02118275 Srg: Srg family chemoreceptor; InterPro: IPR000609 99.02
PF10292324 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor c 98.98
KOG4193|consensus610 98.91
PF02101405 Ocular_alb: Ocular albinism type 1 protein; InterP 98.9
PF10327303 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemorecept 98.9
PF10318302 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemorecept 98.83
PF10319310 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemorecept 98.76
PF04789305 DUF621: Protein of unknown function (DUF621); Inte 98.65
PF00002242 7tm_2: 7 transmembrane receptor (Secretin family); 98.26
PF02117328 7TM_GPCR_Sra: Serpentine type 7TM GPCR chemorecept 98.08
PF10322307 7TM_GPCR_Sru: Serpentine type 7TM GPCR chemorecept 97.94
PF03125365 Sre: C. elegans Sre G protein-coupled chemorecepto 97.9
PF10316273 7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemorecep 97.9
KOG4564|consensus473 97.82
PF01534328 Frizzled: Frizzled/Smoothened family membrane regi 97.43
PF02076283 STE3: Pheromone A receptor; InterPro: IPR001499 G- 96.98
PF03383153 Serpentine_r_xa: Caenorhabditis serpentine recepto 96.62
PF1197076 Git3_C: G protein-coupled glucose receptor regulat 96.03
PF02175236 7TM_GPCR_Srb: Serpentine type 7TM GPCR chemorecept 95.89
KOG4289|consensus 2531 92.64
PF10325267 7TM_GPCR_Srz: Serpentine type 7TM GPCR chemorecept 85.21
PF06681226 DUF1182: Protein of unknown function (DUF1182); In 84.47
>KOG4219|consensus Back     alignment and domain information 
Probab=100.00  E-value=2.6e-47  Score=307.37  Aligned_cols=279  Identities=19%  Similarity=0.350  Sum_probs=235.6

Q ss_pred             HHHHHHHhhcc-eEEEEEeecCCcchhHHHHHHHHHHHHHHHHHhhhhhHHhhhccCcccccccchhHHhHHHHHHHHHH
Q psy16124         19 GRRQCVDIALD-AQITPWYSAQCPGEMINYYILSLAMADLLFGLLVVPLSVYPALAQDWVYGNVICRIVGYIEVTLWVIC   97 (323)
Q Consensus        19 ~~~~~~gl~~N-~v~~~i~~~~~~r~~~~~~l~~La~~Dll~~l~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s   97 (323)
                      ..+.+++++|| ++++++..+|++|+.+|+|++|||+||+++++++.++........+|.+|...|++..++......+|
T Consensus        43 g~l~~vAv~GN~iVlwIil~hrrMRtvtnyfL~NLAfADl~~s~Fn~~f~f~yal~~~W~~G~f~C~f~nf~~itav~vS  122 (423)
T KOG4219|consen   43 GLLVFVAVVGNLIVLWIILAHRRMRTVTNYFLVNLAFADLSMSIFNTVFNFQYALHQEWYFGSFYCRFVNFFPITAVFVS  122 (423)
T ss_pred             HHHHHHHHhcCceEEEEEeehhehhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccccccceeeeccccchhhhhHh
Confidence            33488899999 99999999999999999999999999999999999999888888999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHccCCCcccccccchhhhHHHHHHHHHHhhhhcccccCCCcc----cCCCceEeeccCCc-----
Q psy16124         98 NYTFMWMSVDRYLAVRKPLRYETVQTKTRCQCWMAFTWISSAMVCCPPLLDFSDPKY----DEDGYICMLDWGGM-----  168 (323)
Q Consensus        98 ~~~l~~iaidRy~ai~~p~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~----~~~~~~C~~~~~~~-----  168 (323)
                      +++++++|+|||+||.+|++.+  .+++.++.+++++|+.|++++.|..+.......    +.+...|...++..     
T Consensus       123 VfTlvAiA~DRy~AIi~Pl~~r--~s~r~sk~iIllIW~lA~l~a~P~~l~s~v~~~~~~d~~~~~~~~~~~pe~~~~~~  200 (423)
T KOG4219|consen  123 VFTLVAIAIDRYMAIIHPLQPR--PSRRSSKIIILLIWALALLLALPQLLYSSVEELYLYDGESRVVCVTAWPEHVCPTE  200 (423)
T ss_pred             HHHHHHHHHHHHHHHhhhcccC--CCCcceeehhHHHHHHHHHHhccceeeeeeEEeeccCCcceEEEEEecccccCCcc
Confidence            9999999999999999999865  689999999999999999999998876543221    12244565543322     


Q ss_pred             ------eeehhhhhHHhhhHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhhHHHhhccCCCcchhhHHHHHHHHHHHHHH
Q psy16124        169 ------AAYTITLGCLVLGPSLITIVYTYSYIFSMMRKLKSGPPIHDKEYATALAENLSNPSHNMSFSLIMTFWLSWLPY  242 (323)
Q Consensus       169 ------~~~~~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~i~~~P~  242 (323)
                            +.|...+.++.+++|++++...|..|.+.++..+.....++   ++....+.++|+.||+++++..|.+||+|+
T Consensus       201 ~~~~~~~~y~~vl~~lqYflPliVl~~~Yt~iav~LW~~~~~gd~~d---~~~~~~kak~K~vkmliiVV~~FaicWlPy  277 (423)
T KOG4219|consen  201 NESLLMQGYNYVLLFLQYFLPLIVLGLAYTVIAVTLWGRRIPGDQQD---RKHEQLKAKKKVVKMLIIVVVIFAICWLPY  277 (423)
T ss_pred             hhhhhhcceeeeehhHHHHHHHHHHHHHHHHHHHHHHhccCccchhc---hhhHHHHHHHHHHHHHHHHHHHHHHhccCh
Confidence                  34778888889999999999999999999998775444433   112222235779999999999999999999


Q ss_pred             HHHHHHHHHhCCccccccchhhHHHHHHHHHHHHHhchhhhhhhhcCCHHHHHHHHHhccccc
Q psy16124        243 IVVKLYEYLSGHIISFIPQLHFLVLHFLVVWLGILNSVWKGIVLILMSPQFRIMLRLLCISVC  305 (323)
Q Consensus       243 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~nP~iY~~~~~~fR~~~~~~~~~~~  305 (323)
                      .+..++....++..+   .+.....+....+++..|++.||+||++.|++||.++++.|+++.
T Consensus       278 h~y~il~~~~~~i~~---~k~i~~vyl~~~WLaMSst~yNPiIY~~lN~Rfr~gf~~~fr~cp  337 (423)
T KOG4219|consen  278 HIYFILNATNPEINR---KKFIQQVYLAIYWLAMSSTCYNPIIYCFLNKRFRGGFRRAFRWCP  337 (423)
T ss_pred             hHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHhhhccHhhhhhHHHHHHHHhhhhheee
Confidence            999999887665533   455677888899999999999999999999999999999997664

>PHA03234 DNA packaging protein UL33; Provisional Back     alignment and domain information
>KOG4220|consensus Back     alignment and domain information
>PHA02834 chemokine receptor-like protein; Provisional Back     alignment and domain information
>PHA02638 CC chemokine receptor-like protein; Provisional Back     alignment and domain information
>PHA03235 DNA packaging protein UL33; Provisional Back     alignment and domain information
>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional Back     alignment and domain information
>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>KOG2087|consensus Back     alignment and domain information
>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs) Back     alignment and domain information
>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor Back     alignment and domain information
>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type [] Back     alignment and domain information
>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor Back     alignment and domain information
>PF10326 7TM_GPCR_Str: Serpentine type 7TM GPCR chemoreceptor Str; InterPro: IPR019428 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF02118 Srg: Srg family chemoreceptor; InterPro: IPR000609 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10292 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor class ab chemoreceptor; InterPro: IPR019408 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>KOG4193|consensus Back     alignment and domain information
>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes Back     alignment and domain information
>PF10327 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemoreceptor Sri; InterPro: IPR019429 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10318 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemoreceptor Srh; InterPro: IPR019422 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10319 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemoreceptor Srj; InterPro: IPR019423 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF04789 DUF621: Protein of unknown function (DUF621); InterPro: IPR006874 This is a conserved region found in uncharacterised proteins from Caenorhabditis elegans, and is noted to have possible G-protein-coupled receptor-like activity Back     alignment and domain information
>PF00002 7tm_2: 7 transmembrane receptor (Secretin family); InterPro: IPR000832 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF02117 7TM_GPCR_Sra: Serpentine type 7TM GPCR chemoreceptor Sra; InterPro: IPR000344 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10322 7TM_GPCR_Sru: Serpentine type 7TM GPCR chemoreceptor Sru; InterPro: IPR003839 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF03125 Sre: C Back     alignment and domain information
>PF10316 7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemoreceptor Srbc ; InterPro: IPR019420 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>KOG4564|consensus Back     alignment and domain information
>PF01534 Frizzled: Frizzled/Smoothened family membrane region; InterPro: IPR000539 The frizzled (fz) locus of Drosophila coordinates the cytoskeletons of epidermal cells, producing a parallel array of cuticular hairs and bristles [, ] Back     alignment and domain information
>PF02076 STE3: Pheromone A receptor; InterPro: IPR001499 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF03383 Serpentine_r_xa: Caenorhabditis serpentine receptor-like protein, class xa; InterPro: IPR005047 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF11970 Git3_C: G protein-coupled glucose receptor regulating Gpa2 C-term; InterPro: IPR022596 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor Back     alignment and domain information
>PF02175 7TM_GPCR_Srb: Serpentine type 7TM GPCR chemoreceptor Srb; InterPro: IPR002184 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>KOG4289|consensus Back     alignment and domain information
>PF10325 7TM_GPCR_Srz: Serpentine type 7TM GPCR chemoreceptor Srz; InterPro: IPR018817 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF06681 DUF1182: Protein of unknown function (DUF1182); InterPro: IPR010601 This family consists of several hypothetical proteins of around 360 residues in length and seems to be specific to Caenorhabditis elegans Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query323
4gbr_A309 N-terminal T4 Lysozyme Fusion Facilitates Crystalli 1e-16
3sn6_R514 Crystal Structure Of The Beta2 Adrenergic Receptor- 3e-16
2r4r_A365 Crystal Structure Of The Human Beta2 Adrenoceptor L 7e-16
2r4s_A342 Crystal Structure Of The Human Beta2 Adrenoceptor L 9e-16
3kj6_A366 Crystal Structure Of A Methylated Beta2 Adrenergic 9e-16
2y00_B315 Turkey Beta1 Adrenergic Receptor With Stabilising M 4e-13
2vt4_A313 Turkey Beta1 Adrenergic Receptor With Stabilising M 6e-13
3d4s_A 490 Cholesterol Bound Form Of Human Beta2 Adrenergic Re 2e-12
2rh1_A 500 High Resolution Crystal Structure Of Human B2-Adren 5e-12
3p0g_A 501 Structure Of A Nanobody-Stabilized Active State Of 5e-12
3pds_A 458 Irreversible Agonist-Beta2 Adrenoceptor Complex Len 9e-12
2ydo_A325 Thermostabilised Human A2a Receptor With Adenosine 8e-10
4ea3_B434 Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WI 9e-10
2z73_A448 Crystal Structure Of Squid Rhodopsin Length = 448 1e-09
2ziy_A372 Crystal Structure Of Squid Rhodopsin Length = 372 1e-09
3oax_A349 Crystal Structure Of Bovine Rhodopsin With Beta-Ion 1e-09
1jfp_A348 Structure Of Bovine Rhodopsin (Dark Adapted) Length 1e-09
2x72_A349 Crystal Structure Of The Constitutively Active E113 2e-09
2j4y_A349 Crystal Structure Of A Rhodopsin Stabilizing Mutant 2e-09
3c9m_A348 Structure Of A Mutant Bovine Rhodopsin In Hexagonal 2e-09
3vg9_A326 Crystal Structure Of Human Adenosine A2a Receptor W 4e-09
4a4m_A349 Crystal Structure Of The Light-Activated Constituti 5e-09
3eml_A 488 The 2.6 A Crystal Structure Of A Human A2a Adenosin 6e-09
4eiy_A 447 Crystal Structure Of The Chimeric Protein Of A2aar- 8e-09
3pwh_A329 Thermostabilised Adenosine A2a Receptor Length = 32 1e-08
3rze_A 452 Structure Of The Human Histamine H1 Receptor In Com 1e-07
4ej4_A 461 Structure Of The Delta Opioid Receptor Bound To Nal 2e-07
4daj_A 479 Structure Of The M3 Muscarinic Acetylcholine Recept 2e-07
4dkl_A 464 Crystal Structure Of The Mu-Opioid Receptor Bound T 3e-07
3pbl_A 481 Structure Of The Human Dopamine D3 Receptor In Comp 7e-07
2ks9_A364 Solution Conformation Of Substance P In Water Compl 2e-06
4djh_A 480 Structure Of The Human Kappa Opioid Receptor In Com 9e-06
3uon_A 467 Structure Of The Human M2 Muscarinic Acetylcholine 2e-05
3oe6_A 508 Crystal Structure Of The Cxcr4 Chemokine Receptor I 4e-05
3odu_A 502 The 2.5 A Structure Of The Cxcr4 Chemokine Receptor 5e-05
3oe0_A 499 Crystal Structure Of The Cxcr4 Chemokine Receptor I 5e-05
4grv_A 510 The Crystal Structure Of The Neurotensin Receptor N 3e-04
>pdb|4GBR|A Chain A, N-terminal T4 Lysozyme Fusion Facilitates Crystallization Of A G Protein Coupled Receptor Length = 309 Back     alignment and structure 
Iteration: 1

 Score = 83.6 bits (205), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/265 (26%), Positives = 114/265 (43%), Gaps = 27/265 (10%)
Query: 46  NYYILSLAMADLLFGLLVVPLSVYPALAQDWVYGNVICRIVGYIEVTLWVICNYTFMWMS 105
           NY+I SLA ADL+ GL VVP      L + W +GN  C     I+V        T   ++
Sbjct: 41  NYFITSLACADLVMGLAVVPFGAAHILTKTWTFGNFWCEFWTSIDVLCVTASIETLCVIA 100
Query: 106 VDRYLAVRKPLRYETVQTKTRCQCWMAFTWISSAMVCCPPLLDFSDPKYDEDGYICML-- 163
           VDRY A+  P +Y+++ TK + +  +   WI S +    P+         ++   C    
Sbjct: 101 VDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQEAINCYAEE 160
Query: 164 ---DWGGMAAYTITLGCLVLGPSLITIVYTYSYIF-SMMRKLKSGPPIHDKEYATALAEN 219
              D+    AY I    +     L+ +V+ YS +F    R+L+       KE+       
Sbjct: 161 TCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLQKIDKFCLKEHKAL---- 216
Query: 220 LSNPSHNMSFSLIM-TFWLSWLPYIVVKLYEYLSGHIISFIPQXXXXXXXXXXXWLGILN 278
                   +  +IM TF L WLP+ +V +   +  ++I                W+G +N
Sbjct: 217 -------KTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIR-------KEVYILLNWIGYVN 262
Query: 279 SVWKGIVLILMSPQFRIMLR-LLCI 302
           S +  ++    SP FRI  + LLC+
Sbjct: 263 SGFNPLIY-CRSPDFRIAFQELLCL 286
>pdb|3SN6|R Chain R, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 514 Back     alignment and structure
>pdb|2R4R|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor Length = 365 Back     alignment and structure
>pdb|2R4S|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor Length = 342 Back     alignment and structure
>pdb|3KJ6|A Chain A, Crystal Structure Of A Methylated Beta2 Adrenergic Receptor- Fab Complex Length = 366 Back     alignment and structure
>pdb|2Y00|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising Mutations And Bound Partial Agonist Dobutamine (Crystal Dob92) Length = 315 Back     alignment and structure
>pdb|2VT4|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising Mutations And Bound Cyanopindolol Length = 313 Back     alignment and structure
>pdb|3D4S|A Chain A, Cholesterol Bound Form Of Human Beta2 Adrenergic Receptor. Length = 490 Back     alignment and structure
>pdb|2RH1|A Chain A, High Resolution Crystal Structure Of Human B2-Adrenergic G Protein- Coupled Receptor Length = 500 Back     alignment and structure
>pdb|3P0G|A Chain A, Structure Of A Nanobody-Stabilized Active State Of The Beta2 Adrenoceptor Length = 501 Back     alignment and structure
>pdb|3PDS|A Chain A, Irreversible Agonist-Beta2 Adrenoceptor Complex Length = 458 Back     alignment and structure
>pdb|2YDO|A Chain A, Thermostabilised Human A2a Receptor With Adenosine Bound Length = 325 Back     alignment and structure
>pdb|4EA3|B Chain B, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A PEPTIDE Mimetic Length = 434 Back     alignment and structure
>pdb|2Z73|A Chain A, Crystal Structure Of Squid Rhodopsin Length = 448 Back     alignment and structure
>pdb|2ZIY|A Chain A, Crystal Structure Of Squid Rhodopsin Length = 372 Back     alignment and structure
>pdb|3OAX|A Chain A, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone Length = 349 Back     alignment and structure
>pdb|1JFP|A Chain A, Structure Of Bovine Rhodopsin (Dark Adapted) Length = 348 Back     alignment and structure
>pdb|2X72|A Chain A, Crystal Structure Of The Constitutively Active E113q,N2c, D282c Rhodopsin Mutant With Bound Galphact Peptide Length = 349 Back     alignment and structure
>pdb|2J4Y|A Chain A, Crystal Structure Of A Rhodopsin Stabilizing Mutant Expressed In Mammalian Cells Length = 349 Back     alignment and structure
>pdb|3C9M|A Chain A, Structure Of A Mutant Bovine Rhodopsin In Hexagonal Crystal Form Length = 348 Back     alignment and structure
>pdb|3VG9|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An Allosteric Inverse-Agonist Antibody At 2.7 A Resolution Length = 326 Back     alignment and structure
>pdb|4A4M|A Chain A, Crystal Structure Of The Light-Activated Constitutively Active N2c,M257y,D282c Rhodopsin Mutant In Complex With A Peptide Resembling The C-Terminus Of The Galpha-Protein Subunit (Gact) Length = 349 Back     alignment and structure
>pdb|3EML|A Chain A, The 2.6 A Crystal Structure Of A Human A2a Adenosine Receptor Bound To Zm241385. Length = 488 Back     alignment and structure
>pdb|4EIY|A Chain A, Crystal Structure Of The Chimeric Protein Of A2aar-Bril In Complex With Zm241385 At 1.8a Resolution Length = 447 Back     alignment and structure
>pdb|3PWH|A Chain A, Thermostabilised Adenosine A2a Receptor Length = 329 Back     alignment and structure
>pdb|3RZE|A Chain A, Structure Of The Human Histamine H1 Receptor In Complex With Doxepin Length = 452 Back     alignment and structure
>pdb|4EJ4|A Chain A, Structure Of The Delta Opioid Receptor Bound To Naltrindole Length = 461 Back     alignment and structure
>pdb|4DAJ|A Chain A, Structure Of The M3 Muscarinic Acetylcholine Receptor Length = 479 Back     alignment and structure
>pdb|4DKL|A Chain A, Crystal Structure Of The Mu-Opioid Receptor Bound To A Morphinan Antagonist Length = 464 Back     alignment and structure
>pdb|3PBL|A Chain A, Structure Of The Human Dopamine D3 Receptor In Complex With Eticlopride Length = 481 Back     alignment and structure
>pdb|2KS9|A Chain A, Solution Conformation Of Substance P In Water Complexed With Nk1r Length = 364 Back     alignment and structure
>pdb|4DJH|A Chain A, Structure Of The Human Kappa Opioid Receptor In Complex With Jdtic Length = 480 Back     alignment and structure
>pdb|3UON|A Chain A, Structure Of The Human M2 Muscarinic Acetylcholine Receptor Bound To An Antagonist Length = 467 Back     alignment and structure
>pdb|3OE6|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In Complex With A Small Molecule Antagonist It1t In I222 Spacegroup Length = 508 Back     alignment and structure
>pdb|3ODU|A Chain A, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In Complex With Small Molecule Antagonist It1t Length = 502 Back     alignment and structure
>pdb|3OE0|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In Complex With A Cyclic Peptide Antagonist Cvx15 Length = 499 Back     alignment and structure
>pdb|4GRV|A Chain A, The Crystal Structure Of The Neurotensin Receptor Nts1 In Complex With Neurotensin (8-13) Length = 510 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query323
2z73_A448 Rhodopsin; visual pigment, GQ-type, G-protein coup 3e-32
2ks9_A364 Substance-P receptor; water, autodock, NK1, neurop 1e-31
4ea3_A434 Fusion protein of nociceptin receptor and cytochr; 3e-31
1u19_A349 Rhodopsin; G protein-coupled receptor, membrane pr 4e-30
4amj_A315 Beta-1 adrenergic receptor; membrane protein, 7TMR 9e-27
3sn6_R514 Lysozyme, beta-2 adrenergic receptor; seven transm 2e-26
3uon_A 467 Human M2 muscarinic acetylcholine, receptor T4 LY 3e-25
4dkl_A 464 MU-type opioid receptor, lysozyme chimera; G-prote 5e-24
3eml_A 488 Human adenosine A2A receptor/T4 lysozyme chimera; 3e-23
4eiy_A447 Adenosine receptor A2A/soluble cytochrome B562 CH; 5e-23
3rze_A 452 Histamine H1 receptor, lysozyme chimera; structura 7e-23
2rh1_A 500 Beta-2-adrenergic receptor/T4-lysozyme chimera; GP 9e-23
3odu_A 502 C-X-C chemokine receptor type 4, lysozyme chimera; 2e-21
3pbl_A 481 D(3) dopamine receptor, lysozyme chimera; structur 4e-21
3v2y_A 520 Sphingosine 1-phosphate receptor 1, lysozyme CHIM; 5e-18
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448 Back     alignment and structure
 Score =  123 bits (310), Expect = 3e-32
 Identities = 54/280 (19%), Positives = 103/280 (36%), Gaps = 21/280 (7%)

Query: 46  NYYILSLAMADLLFGLL-VVPLSVYPALAQDWVYGNVICRIVGYIEVTLWVICNYTFMWM 104
           N +I++LA +D  F L+   PL       + W++G   C++ G+I      +   T   +
Sbjct: 70  NMFIINLAFSDFTFSLVNGFPLMTISCFLKKWIFGFAACKVYGFIGGIFGFMSIMTMAMI 129

Query: 105 SVDRYLAVRKPLRYETVQTKTRCQCWMAFTWISSAMVCCPPLLDFSDPKYDEDGYICMLD 164
           S+DRY  + +P+      +  R    + F W+ S +    P+  +     +     C  D
Sbjct: 130 SIDRYNVIGRPMAASKKMSHRRAFIMIIFVWLWSVLWAIGPIFGWGAYTLEGVLCNCSFD 189

Query: 165 WGGMA----AYTITLGCLVLGPSLITIVYTYSYIFSMMRK-LKSGPPIHDKEYATALAEN 219
           +        +  + +  L     ++ I + Y  I   +    K    +  +  A  L + 
Sbjct: 190 YISRDSTTRSNILCMFILGFFGPILIIFFCYFNIVMSVSNHEKEMAAMAKRLNAKELRKA 249

Query: 220 LSNPSH-----NMSFSLIMTFWLSWLPYIVVKLYEYLSGHIISFIPQLHF-LVLHFLVVW 273
            +  +       +S  ++  F LSW PY VV L          F P          L V 
Sbjct: 250 QAGANAEMRLAKISIVIVSQFLLSWSPYAVVALL-------AQFGPLEWVTPYAAQLPVM 302

Query: 274 LGILNSVWKGIVLILMSPQFR--IMLRLLCISVCCKQKSN 311
               +++   ++  +  P+FR  I      +  CC+    
Sbjct: 303 FAKASAIHNPMIYSVSHPKFREAISQTFPWVLTCCQFDDK 342
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A Length = 364 Back     alignment and structure
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ... Length = 349 Back     alignment and structure
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A* Length = 315 Back     alignment and structure
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A Length = 514 Back     alignment and structure
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A* Length = 467 Back     alignment and structure
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A* Length = 464 Back     alignment and structure
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A* Length = 488 Back     alignment and structure
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A Length = 447 Back     alignment and structure
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens} Length = 452 Back     alignment and structure
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A* Length = 500 Back     alignment and structure
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B* Length = 502 Back     alignment and structure
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, protein structure initiative, AC technologies center for gene to 3D structure; HET: ETQ MAL; 2.89A {Homo sapiens} Length = 481 Back     alignment and structure
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A* Length = 520 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query323
4grv_A510 Neurotensin receptor type 1, lysozyme chimera; G-p 100.0
4amj_A315 Beta-1 adrenergic receptor; membrane protein, 7TMR 100.0
2rh1_A500 Beta-2-adrenergic receptor/T4-lysozyme chimera; GP 100.0
3uon_A467 Human M2 muscarinic acetylcholine, receptor T4 LY 100.0
3vw7_A484 Proteinase-activated receptor 1, lysozyme; high re 100.0
2ks9_A364 Substance-P receptor; water, autodock, NK1, neurop 100.0
1u19_A349 Rhodopsin; G protein-coupled receptor, membrane pr 100.0
3eml_A488 Human adenosine A2A receptor/T4 lysozyme chimera; 100.0
3rze_A452 Histamine H1 receptor, lysozyme chimera; structura 100.0
3v2y_A520 Sphingosine 1-phosphate receptor 1, lysozyme CHIM; 100.0
4dkl_A464 MU-type opioid receptor, lysozyme chimera; G-prote 100.0
2z73_A448 Rhodopsin; visual pigment, GQ-type, G-protein coup 100.0
4eiy_A447 Adenosine receptor A2A/soluble cytochrome B562 CH; 100.0
3pbl_A481 D(3) dopamine receptor, lysozyme chimera; structur 100.0
3odu_A502 C-X-C chemokine receptor type 4, lysozyme chimera; 100.0
2lnl_A296 C-X-C chemokine receptor type 1; G protein coupled 100.0
4ea3_A434 Fusion protein of nociceptin receptor and cytochr; 100.0
3sn6_R514 Lysozyme, beta-2 adrenergic receptor; seven transm 100.0
2koe_A40 Human cannabinoid receptor 1 - helix 7/8 peptide; 98.75
1hll_A32 Alpha-2A adrenergic receptor; helix-linker-helix, 98.69
2ki9_A33 Cannabinoid receptor 2; GPCR, G-protein coupled re 98.02
4ea3_A434 Fusion protein of nociceptin receptor and cytochr; 86.32
2ket_A27 Cathelicidin-6; antimicrobial peptide, antibiotic, 81.52
>4grv_A Neurotensin receptor type 1, lysozyme chimera; G-protein coupled receptor, G-protein, signaling protein-agonist complex; HET: EPE; 2.80A {Rattus norvegicus} Back     alignment and structure
Probab=100.00  E-value=8.6e-49  Score=349.89  Aligned_cols=291  Identities=17%  Similarity=0.241  Sum_probs=214.9

Q ss_pred             HHHHHHhhcc-eEEEEEeecCCc---chhHHHHHHHHHHHHHHHHHhhhhhHHhhhcc--CcccccccchhHHhHHHHHH
Q psy16124         20 RRQCVDIALD-AQITPWYSAQCP---GEMINYYILSLAMADLLFGLLVVPLSVYPALA--QDWVYGNVICRIVGYIEVTL   93 (323)
Q Consensus        20 ~~~~~gl~~N-~v~~~i~~~~~~---r~~~~~~l~~La~~Dll~~l~~~~~~~~~~~~--~~~~~~~~~C~~~~~~~~~~   93 (323)
                      .++++|++|| ++++++.+++++   ++++|+|++|||++|++.+++.+|+.+.....  +.|.+|+..|++..++..++
T Consensus        41 ~i~~~g~~gN~lvi~~i~~~~~~r~~~~~~n~~i~~La~aDll~~~~~~p~~~~~~~~~~~~w~~g~~~C~~~~~~~~~~  120 (510)
T 4grv_A           41 ALFVVGTVGNSVTLFTLARKKSLQSLQSTVHYHLGSLALSDLLILLLAMPVELYNFIWVHHPWAFGDAGCRGYYFLRDAC  120 (510)
T ss_dssp             HHHHHHHHHHHHHHHHTSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSSCSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhheeeecCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEhhHHHHHHHHHHHHHH
Confidence            3488999999 888888777654   47899999999999999999999998876543  56999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHccCCCcccccccchhhhHHHHHHHHHHhhhhcccccCCCccc-----CCCceEeeccCC-
Q psy16124         94 WVICNYTFMWMSVDRYLAVRKPLRYETVQTKTRCQCWMAFTWISSAMVCCPPLLDFSDPKYD-----EDGYICMLDWGG-  167 (323)
Q Consensus        94 ~~~s~~~l~~iaidRy~ai~~p~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~-----~~~~~C~~~~~~-  167 (323)
                      ..+|++++++||+|||+||++|++|+..++++++..+++++|++++++++|+++.++.....     .....|...++. 
T Consensus       121 ~~~S~~~l~~is~dRy~ai~~P~~~~~~~t~~~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~~~~~~~~~~~c~~~~~~~  200 (510)
T 4grv_A          121 TYATALNVASLSVARYLAICHPFKAKTLMSRSRTKKFISAIWLASALLAIPMLFTMGLQNRSADGTHPGGLVCTPIVDTA  200 (510)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSCCCCCCCCCCSCCHHHHHHHHHHHHHHHTTHHHHEEEEECSSSSCCGGGEEEEECSCHH
T ss_pred             HHHHHHHHHHHHHHheEEEeccccccccccccccceeehHHHHHHHHHHHHHHHhhcccccccCCCCCCccccccccccc
Confidence            99999999999999999999999999999999999999999999999999998866432222     223457665543 


Q ss_pred             -ceeehhhhhHHhhhHHHHHHHHHHHHHHHHHHHhcCCCC------------------------------C---------
Q psy16124        168 -MAAYTITLGCLVLGPSLITIVYTYSYIFSMMRKLKSGPP------------------------------I---------  207 (323)
Q Consensus       168 -~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~~------------------------------~---------  207 (323)
                       ...|..+..++.+++|+++++++|..|++.++++.+...                              .         
T Consensus       201 ~~~~~~~~~~~~~f~iP~~ii~~~Y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (510)
T 4grv_A          201 TVKVVIQVNTFMSFLFPMLVISILNTVIANKLTVMVNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSE  280 (510)
T ss_dssp             HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTSCTHHHHHHHHTCCEEEEEECTTSCEEEETTEECCCSSSHHHHHHS
T ss_pred             hhhhhhhhhhhHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccccccccccCCCCCCCccccc
Confidence             244556667778899999999999999999875321000                              0         


Q ss_pred             --------------------------------------------------------------------------------
Q psy16124        208 --------------------------------------------------------------------------------  207 (323)
Q Consensus       208 --------------------------------------------------------------------------------  207 (323)
                                                                                                      
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (510)
T 4grv_A          281 LDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLNNKR  360 (510)
T ss_dssp             CCC---CCCTTBCCHHHHHHHHHHHHHHHHHHHHHCTTTHHHHHHSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTC
T ss_pred             cCcCCCCCCCCcccCCccccccCCCCcccccccccCCCCCCCcCccccccccccCCccccCCCCCCCCCCccccccccCC
Confidence                                                                                            


Q ss_pred             ---------------Cch---------------hhhHHHhhccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCccc
Q psy16124        208 ---------------HDK---------------EYATALAENLSNPSHNMSFSLIMTFWLSWLPYIVVKLYEYLSGHIIS  257 (323)
Q Consensus       208 ---------------~~~---------------~~~~~~~~~~~~~~~~~~~~i~~~f~i~~~P~~i~~~~~~~~~~~~~  257 (323)
                                     +..               +..++...++++|++||+++++++|++||+|+++..++..+......
T Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~erk~~k~L~iVv~~F~iCWlPf~i~~l~~~~~~~~~~  440 (510)
T 4grv_A          361 WDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYGSGSVQALRHGVLVARAVVIAFVVCWLPYHVRRLMFCYISDEQW  440 (510)
T ss_dssp             HHHHHHHHHSSCSCCSSHHHHHHHHHHHHHSSSGGGTTSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCC
T ss_pred             CcccccccccccccccCCccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccC
Confidence                           000               00000011235688999999999999999999999998877654311


Q ss_pred             -cccchhhHHHHHHHHHHHHHhchhhhhhhhcCCHHHHHHHHHhccccccCCCC
Q psy16124        258 -FIPQLHFLVLHFLVVWLGILNSVWKGIVLILMSPQFRIMLRLLCISVCCKQKS  310 (323)
Q Consensus       258 -~~~~~~~~~~~~~~~~l~~~~~~~nP~iY~~~~~~fR~~~~~~~~~~~~~~~~  310 (323)
                       .........+..++.+++++||++||+||+++|++||+++++++++.|++.++
T Consensus       441 ~~~~~~~~~~~~~~~~~L~Y~NS~iNPiIY~~~n~~FR~aFk~iL~C~C~~~r~  494 (510)
T 4grv_A          441 TTFLFDFYHYFYMLTNALAYASSAINPILYNLVSANFRQVFLSTLACLCPGWRH  494 (510)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCC--------------
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCCCCC
Confidence             01112234566788899999999999999999999999999999655544333
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A* Back     alignment and structure
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A* Back     alignment and structure
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A* Back     alignment and structure
>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens} Back     alignment and structure
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A Back     alignment and structure
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ... Back     alignment and structure
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A* Back     alignment and structure
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens} Back     alignment and structure
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A* Back     alignment and structure
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A* Back     alignment and structure
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Back     alignment and structure
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A Back     alignment and structure
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, PSI-biology, protein structure initiative; HET: ETQ MAL; 2.89A {Homo sapiens} Back     alignment and structure
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B* Back     alignment and structure
>2lnl_A C-X-C chemokine receptor type 1; G protein coupled receptor, GPCR, membrane protei transmembrane, 7TM, phospholipid, signaling, signaling PROT; NMR {Homo sapiens} Back     alignment and structure
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A 4gbr_A* Back     alignment and structure
>2koe_A Human cannabinoid receptor 1 - helix 7/8 peptide; GPCR, HCB1, membrane protein, signaling protein; NMR {Homo sapiens} Back     alignment and structure
>1hll_A Alpha-2A adrenergic receptor; helix-linker-helix, membrane protein; NMR {Synthetic} SCOP: j.94.1.1 PDB: 1hof_A 1ho9_A 1hod_A Back     alignment and structure
>2ki9_A Cannabinoid receptor 2; GPCR, G-protein coupled receptor, membrane protein; NMR {Synthetic} Back     alignment and structure
>2ket_A Cathelicidin-6; antimicrobial peptide, antibiotic, antimicrobial, fungicide, pyrrolidone carboxylic acid, secreted; NMR {Bos taurus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 323
d1u19a_348 f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 8e-15
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} Length = 348 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 71.9 bits (175), Expect = 8e-15
 Identities = 51/266 (19%), Positives = 108/266 (40%), Gaps = 10/266 (3%)

Query: 45  INYYILSLAMADLLFGLLVVPLSVYPALAQDWVYGNVICRIVGYIEVTLWVICNYTFMWM 104
           +NY +L+LA+ADL         ++Y +L   +V+G   C + G+       I  ++ + +
Sbjct: 72  LNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVL 131

Query: 105 SVDRYLAVRKPLRYETVQTKTRCQCWMAFTWISSAMVCCPPLLDFSDPKYDEDGYICMLD 164
           +++RY+ V KP+       +      +AFTW+ +     PPL+ +S    +     C +D
Sbjct: 132 AIERYVVVCKPMSNFR-FGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGID 190

Query: 165 WGGMAAYTITLGCLVLGPSLITIVYTYSYIFSMMRKLKSGPPIHDKEYATALAENLSNPS 224
           +      T     ++    +  I+      F   + + +      ++  +A  +      
Sbjct: 191 YYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEV 250

Query: 225 HNMSFSLIMTFWLSWLPYIVVKLYEYLSGHIISFIPQLHFLVLHFLVVWLGILNSVWKGI 284
             M   +++ F + WLPY  V  Y      I +        +   +  +    ++V+  +
Sbjct: 251 TRMVIIMVIAFLICWLPYAGVAFY------IFTHQGSDFGPIFMTIPAFFAKTSAVYNPV 304

Query: 285 VLILMSPQFRIMLRLLCISVCCKQKS 310
           + I+M+ QFR  +       CC +  
Sbjct: 305 IYIMMNKQFRNCMVTTL---CCGKNP 327

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query323
d1u19a_348 Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} 100.0
d1u19a_348 Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} 81.7
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=4.4e-41  Score=284.46  Aligned_cols=268  Identities=18%  Similarity=0.323  Sum_probs=220.6

Q ss_pred             HHHHHhhcc-eEEEEEeecCCcchhHHHHHHHHHHHHHHHHHhhhhhHHhhhccCcccccccchhHHhHHHHHHHHHHHH
Q psy16124         21 RQCVDIALD-AQITPWYSAQCPGEMINYYILSLAMADLLFGLLVVPLSVYPALAQDWVYGNVICRIVGYIEVTLWVICNY   99 (323)
Q Consensus        21 ~~~~gl~~N-~v~~~i~~~~~~r~~~~~~l~~La~~Dll~~l~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~   99 (323)
                      ++++|++|| ++++++.++|++|++.|+++.|||++|++.++...|..+.....+.|..++..|+...++...+..++.+
T Consensus        47 i~v~gi~gN~lvi~vi~~~k~lr~~~~~~l~nLaiaDll~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~s~~  126 (348)
T d1u19a_          47 LIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALW  126 (348)
T ss_dssp             HHHHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHeehhhhccCCCCCHhHHHHHHHHHHHHHHHHHHHHHhhhhhccCccccCchhhhhhhhccccceeeecc
Confidence            488999999 8888889999999999999999999999999889998888887788888899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHccCCCcccccccchhhhHHHHHHHHHHhhhhcccccCCCcccCCCceEeeccCC------ceeehh
Q psy16124        100 TFMWMSVDRYLAVRKPLRYETVQTKTRCQCWMAFTWISSAMVCCPPLLDFSDPKYDEDGYICMLDWGG------MAAYTI  173 (323)
Q Consensus       100 ~l~~iaidRy~ai~~p~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~------~~~~~~  173 (323)
                      +++++++|||.+|++|++|+.. ++++....+..+|..++++..++.+.......+.+...|......      ...+..
T Consensus       127 ~l~~is~~R~~~i~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (348)
T d1u19a_         127 SLVVLAIERYVVVCKPMSNFRF-GENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVI  205 (348)
T ss_dssp             HHHHHHHHHHHHHTCCSSSCCC-CHHHHHHHHHHHHHHHHHHHSGGGTTSSCCEEETTTTEEECCCSCCCGGGTHHHHHH
T ss_pred             hhhhhhcccceeeecccccccc-ccccccccceeeehhhhheecccccccceeccCCcccccccccccccccccchhhHH
Confidence            9999999999999999998765 566667777888999999999988877776666666667654332      233455


Q ss_pred             hhhHHhhhHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhhHHHhhccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy16124        174 TLGCLVLGPSLITIVYTYSYIFSMMRKLKSGPPIHDKEYATALAENLSNPSHNMSFSLIMTFWLSWLPYIVVKLYEYLSG  253 (323)
Q Consensus       174 ~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~i~~~P~~i~~~~~~~~~  253 (323)
                      ....+..++|+++++++|.++.+.+|++.++.+....+.+      +++|.+++++.++++|++||+|+.+..++.....
T Consensus       206 ~~~~~~~~ip~~i~~~~y~~i~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~i~~~f~~~~~P~~i~~~~~~~~~  279 (348)
T d1u19a_         206 YMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQK------AEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQ  279 (348)
T ss_dssp             HHHHHTTHHHHHHHHHHHTTTTTSSCSCCCSSCSSSHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcccccccchhhhhHH------HHhhHhheEEEeehHHHHHhhHHHhhhheeeccC
Confidence            5666677889999999999998877766554443332211      1467889999999999999999998888766654


Q ss_pred             CccccccchhhHHHHHHHHHHHHHhchhhhhhhhcCCHHHHHHHHHhc
Q psy16124        254 HIISFIPQLHFLVLHFLVVWLGILNSVWKGIVLILMSPQFRIMLRLLC  301 (323)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~nP~iY~~~~~~fR~~~~~~~  301 (323)
                      ....      ......+..++..+|+++||+||++++++||+++++++
T Consensus       280 ~~~~------~~~~~~~~~~l~~~ns~iNPiIY~~~~~~fR~~~~~~l  321 (348)
T d1u19a_         280 GSDF------GPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTL  321 (348)
T ss_dssp             TSCC------CHHHHHHHHHHGGGGGTHHHHHHHHTCHHHHHHHHHHH
T ss_pred             Cccc------cHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHh
Confidence            4321      24566778889999999999999999999999999998
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure