Psyllid ID: psy16142

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420------
Protein Sequence
MKSLSVDTMQIILTIAEWHFLLYLLPWRWEPLLAGLRKKGGTVSISNLGMFGIKNFSAIINPPQACILAVGSLSQRLVREGNDRVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENESDVAAFKDFKDDAPPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRVYASPLAKRLAAEKGLDLSSIGAGSGLFGSITSADLSKASKAGAVAAPSKSAKPTANGPFTDLPVSGVRGVIAKRLLQSKQVIKLREQMNKALEKRGAKLSINDFIIKATALASRRVPEANSSWQDTFIREYHSVDVSVAVNTDKGLFTPIVFDADKKGLVDISNDSRSLISFRRPVKFSEESNDVKTLAAKAKEGKLQPHEFQVR
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHHHHHHHHccccccccccccEEccccEEEEccccccccccEEEEcccccHHcccccccccccccccccccccccccccccEEEEEEEEccccccccccEEEEEEEccEEEEEEccccEEEEEEEccccccccccccEEEEEEcccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccHHHHHHHHHHcccccccccccccccEEEHHHHHHHHHccccccccccccccccccccEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEHHHHHHHHHHHHHHHccccccEEEcccEEEcccccEEEEEEccccEEcccccccccccHHHHHHccccccccccccccccccHHHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccEEEEccccccccccccccccccccEEEEccccccccccccccEEEcccccccccccEEEEEEEccccccccccEEEEEEcccEEEEEEcccccEEEEEEEccccEEcccccEEEEEEcccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccEEccHHHHHHHHHccccHHHccccccccccEEHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHcccEEEHHHHHHHHHHHHHHHccHHcccccccEEEEEcEEEEEEEEEcccccEEEEEEcccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccHHHcEcc
Coil and Loop (DISEMBL)
MKSLSVDTMQIILTIAEWHFLLYLLpwrwepllaglrkkggtvsisnlgmfgiknfsaiinpPQACILAVGSLSQRLVRegndrvalpalsptmemgTIVSWAKkegdklnegDLLAEIetdkatmgfetpeegYLAKIlvpagskdvpigKLVCIIVEnesdvaafkdfkddappaagasapappppkvaaappppppkaapapsptpvpsqktsggtrvyasPLAKRLAAEkgldlssigagsglfgsitsadlskaskagavaapsksakptangpftdlpvsgvRGVIAKRLLQSKQVIKLREQMNKALEKRGAKLSINDFIIKATALAsrrvpeansswqdTFIREYHSVDVSVavntdkglftpivfdadkkglvdisndsrslisfrrpvkfseesnDVKTLAAKakegklqphefqvr
Flexible Loop (DISEMBL)
MKSLSVDTMQIILTIAEWHFLLYLLPWRWEPLLAGLRKKGGTVSISNLGMFGIKNFSAIINPPQACILAVGSLSQRLVREGNDrvalpalsptmemGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENESDVAAFKDFKDDAPPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRVYASPLAKRLAAEKGLDLSSIGAGSGLFGSITSADLSKASKAGAVAapsksakptangpftdlpvSGVRGVIAKRLLQSKQVIKLREQMNKALekrgaklsiNDFIIKATalasrrvpeansSWQDTFIREYHSVDVSVAVNTDKGLFTPivfdadkkglvdisndsrslisfrrpvkfseesndVKTLaakakegklqphefqvr
Low Complexity Region (SEG)
MKSLSVDTMQIILTIAEWHFLLYLLPWRWEPLLAGLRKKGGTVSISNLGMFGIKNFSAIINPPQACILAVGSLSQRLVREGNDRVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENESDVaafkdfkddappaagasapappppkvaaappppppkaapapsptpvpSQKTSGGTRVYASPLAKRLAAEKGLDLSSIGAGSGLFGSITSADLSKASKAGAVAAPSKSAKPTANGPFTDLPVSGVRGVIAKRLLQSKQVIKLREQMNKALEKRGAKLSINDFIIKATALASRRVPEANSSWQDTFIREYHSVDVSVAVNTDKGLFTPIVFDADKKGLVDISNDSRSLISFRRPVKFSEESNDVKTLAAKAKEGKLQPHEFQVR
Disordered region (IsUnstruct)
******DTMQIILTIAEWHFLLYLLPWRWEPLLAGLRKKGGTVSISNLGMFGIKNFSAIINPPQACILAVGSLSQRLVREGNDRVALPALSPTMEMGTIVSWAKK****L**GDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENESDVAAF*******************************************************************************************************************LPVSGVRGVIAKRLLQSKQVIKLREQMNKALEKRGAKLSINDFIIKATALASRRVPEANSSWQDTFIREYHSVDVSVAVNTDKGLFTPIVFDADKKGLVDIS******************************************
Disordered Region (DISOPRED)
*********QIILTIAEWHFLLYLLPWRWEPLLAGLRKKGGTVSISNLGMFGIKNFSAIINPPQACILAVGSLSQRLVREGNDRVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENESDV************************************************************PLAKRLAAEKGLDLSSIGAGSGLFGSITSADL**************************LPVSGVRGVIAKRLLQSKQVIKLREQMNKALEKRGAKLSINDFIIKATALASRRVPEANSSWQDTFIREYHSVDVSVAVNTDKGLFTPIVFDADKKGLVDISNDSRSLISFRRPVK*SEE*NDVKTLAAKAKEGKLQP*EFQV*
Disordered Region (DISEMBL)
MKSLSVDTMQIILTIAEWHFLLYLLPWRWEPLLAGLRKKGGTVSISNLGMFGIKNFSAIINPPQACILAVGSLSQRLVREGNDRVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENESDVAAFKDFKDDA**********************************************VYASPLAKRLAAEKGLDLSSIGAGSGLFGSITSADL******************TANGPFTDLPVSGVRGVIAKRLLQSKQVIKLREQMNKALEKRGAKLSINDFIIKATALAS*********WQDTFIREYHSVDVSVAVNTDKGLFTPIVFDADKKGLVDISNDSRSLISFRRPVKFSEESNDVKTLAAKAKEGKLQPHEFQVR
Disordered Region (DISPRO)
***LSVDTMQIILTIAEWHFLLYLLPWRWEPLLAGLRKKGGTVSISNLGMFGIKNFSAIINPPQACILAVGSLSQRLVREGNDRVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENESDVAAFKD**************************************************RVYASPLAKRLAAEKGLDLSSIGAGSGLFGSITSADLSKASKA*****************FTDLPVSGVRGVIAKRLLQSKQVIKLREQMNKALEKRGAKLSINDFIIKATALASRRVPEANSSWQDTFIREYHSVDVSVAVNTDKGLFTPIVFDADKKGLVDISNDSRSLISFRRPVKFSEESNDVKTLAAKAKEGKLQPH*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKSLSVDTMQIILTIAEWHFLLYLLPWRWEPLLAGLRKKGGTVSISNLGMFGIKNFSAIINPPQACILAVGSLSQRLVREGNDRVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENESDVAAFKDFKDDAPPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRVYASPLAKRLAAEKGLDLSSIGAGSGLFGSITSADLSKASKAGAVAAPSKSAKPTANGPFTDLPVSGVRGVIAKRLLQSKQVIKLREQMNKALEKRGAKLSINDFIIKATALASRRVPEANSSWQDTFIREYHSVDVSVAVNTDKGLFTPIVFDADKKGLVDISNDSRSLISFRRPVKFSEESNDVKTLAAKAKEGKLQPHEFQVR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	426	2.2.26 [Sep-21-2011]
Q19749	507	Dihydrolipoyllysine-resid	yes	N/A	0.755	0.635	0.542	3e-93
P10515	647	Dihydrolipoyllysine-resid	yes	N/A	0.732	0.482	0.482	5e-79
Q8BMF4	642	Dihydrolipoyllysine-resid	yes	N/A	0.734	0.487	0.497	2e-77
P08461	632	Dihydrolipoyllysine-resid	yes	N/A	0.734	0.495	0.501	1e-76
Q5M729	539	Dihydrolipoyllysine-resid	yes	N/A	0.741	0.586	0.405	2e-64
P12695	482	Dihydrolipoyllysine-resid	yes	N/A	0.748	0.661	0.379	4e-58
Q8RWN9	539	Dihydrolipoyllysine-resid	no	N/A	0.746	0.589	0.391	4e-57
O59816	483	Dihydrolipoyllysine-resid	yes	N/A	0.734	0.648	0.393	2e-56
Q1RJT3	418	Dihydrolipoyllysine-resid	yes	N/A	0.725	0.739	0.371	2e-55
P36413	635	Dihydrolipoyllysine-resid	yes	N/A	0.732	0.491	0.390	6e-55

>sp|Q19749|ODP2_CAEEL Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial OS=Caenorhabditis elegans GN=F23B12.5 PE=1 SV=1

 Score =  342 bits (878), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 206/380 (54%), Positives = 253/380 (66%), Gaps = 58/380 (15%)

Query: 76  RLVREGN----DRVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETP 131
           RL   GN    +RVALPALSPTME+GT+VSW KKEGD+L+EGDLL EIETDKATMGFETP
Sbjct: 67  RLYSSGNLPKHNRVALPALSPTMELGTVVSWQKKEGDQLSEGDLLCEIETDKATMGFETP 126

Query: 132 EEGYLAKILVPAGSKDVPIGKLVCIIVENESDVAAFKDFKDDAPPAAGASAP----APPP 187
           EEGYLAKIL+  GSKDVPIGKL+CIIV+NE+DVAAFKDFKDD   ++G SAP    AP P
Sbjct: 127 EEGYLAKILIQEGSKDVPIGKLLCIIVDNEADVAAFKDFKDDG-ASSGGSAPAAEKAPEP 185

Query: 188 PKVAAAPPPPPP----KAAPAPSPTPVPSQKTSGGTRVYASPLAKRLAAEKGLDLSSIGA 243
            K AA+  P PP    +A   P   P+P   +SG  RV ASP AK+LAAE GLDLS + +
Sbjct: 186 AKPAASSQPSPPAQMYQAPSVPKSAPIP-HSSSG--RVSASPFAKKLAAENGLDLSGV-S 241

Query: 244 GSGLFGSITSADLSKASKAGAVAAPSKSAKPTANGPFTDLPVSGVRGVIAKRLLQSKQVI 303
           GSG  G I ++DLS+A   GA    S + +  +   +TD+P+S +R  IAKRL +SK  I
Sbjct: 242 GSGPGGRILASDLSQAPAKGAT---STTTQAVSGQDYTDIPLSNMRKTIAKRLTESKSTI 298

Query: 304 ---------------KLREQMNKALEK----RGAKLSINDFIIKATALASRRVPEANSSW 344
                          ++RE++N  L K    +  K+SINDFIIKA+ALA +RVPEANS W
Sbjct: 299 PHYYLTSEIQLDTLLQVREKLNGLLAKGTSGQATKISINDFIIKASALACQRVPEANSYW 358

Query: 345 QDTFIREYHSVDVSVAVNTDKGLFTPIVFDADKKGLVDISNDSRSLISFRRPVKFSEESN 404
            D+FIRE H VDVSVAV+T  GL TPI+F+A  KGL  I                   ++
Sbjct: 359 MDSFIRENHHVDVSVAVSTPAGLITPIIFNAHAKGLATI-------------------AS 399

Query: 405 DVKTLAAKAKEGKLQPHEFQ 424
           ++  LA +A+EGKLQPHEFQ
Sbjct: 400 EIVELAQRAREGKLQPHEFQ 419

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).
Caenorhabditis elegans (taxid: 6239)
EC: 2EC: .EC: 3EC: .EC: 1EC: .EC: 1EC: 2

>sp|P10515|ODP2_HUMAN Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial OS=Homo sapiens GN=DLAT PE=1 SV=3

 Score =  295 bits (755), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 178/369 (48%), Positives = 225/369 (60%), Gaps = 57/369 (15%)

Query: 84  RVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPA 143
           +V LPALSPTM MGT+  W KK G+KL+EGDLLAEIETDKAT+GFE  EEGYLAKILVP 
Sbjct: 220 QVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPE 279

Query: 144 GSKDVPIGKLVCIIVENESDVAAFKDFK----DDAPPAAGASAPAPPPPKVAAAPPPPPP 199
           G++DVP+G  +CIIVE E+D++AF D++     D  P      P P         P  P 
Sbjct: 280 GTRDVPLGTPLCIIVEKEADISAFADYRPTEVTDLKPQVPPPTPPPVAAVPPTPQPLAPT 339

Query: 200 KAAPAPSPTPVPSQKTSGGTRVYASPLAKRLAAEKGLDLSSIGAGSGLFGSITSADLSK- 258
            +AP P+    P        RV+ SPLAK+LA EKG+DL+ +  G+G  G IT  D+   
Sbjct: 340 PSAPCPATPAGPK------GRVFVSPLAKKLAVEKGIDLTQV-KGTGPDGRITKKDIDSF 392

Query: 259 --------ASKAGAVAAPSKSAKPTANGPFTDLPVSGVRGVIAKRLLQSKQ--------- 301
                    +       P  +  PT  G FTD+P+S +R VIA+RL+QSKQ         
Sbjct: 393 VPSKVAPAPAAVVPPTGPGMAPVPT--GVFTDIPISNIRRVIAQRLMQSKQTIPHYYLSI 450

Query: 302 ------VIKLREQMNKALEKRGAKLSINDFIIKATALASRRVPEANSSWQDTFIREYHSV 355
                 V+ +R+++NK LE R +K+S+NDFIIKA+ALA  +VPEANSSW DT IR+ H V
Sbjct: 451 DVNMGEVLLVRKELNKILEGR-SKISVNDFIIKASALACLKVPEANSSWMDTVIRQNHVV 509

Query: 356 DVSVAVNTDKGLFTPIVFDADKKGLVDISNDSRSLISFRRPVKFSEESNDVKTLAAKAKE 415
           DVSVAV+T  GL TPIVF+A  KG+  I                   +NDV +LA KA+E
Sbjct: 510 DVSVAVSTPAGLITPIVFNAHIKGVETI-------------------ANDVVSLATKARE 550

Query: 416 GKLQPHEFQ 424
           GKLQPHEFQ
Sbjct: 551 GKLQPHEFQ 559

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|Q8BMF4|ODP2_MOUSE Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial OS=Mus musculus GN=Dlat PE=1 SV=2

 Score =  289 bits (740), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 181/364 (49%), Positives = 230/364 (63%), Gaps = 51/364 (14%)

Query: 84  RVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPA 143
           ++ LPALSPTM MGT+  W KK G+KL+EGDLLAEIETDKAT+GFE  EEGYLAKILVP 
Sbjct: 219 QIVLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPE 278

Query: 144 GSKDVPIGKLVCIIVENESDVAAFKDFKDDAPPAAGASAPAPPPPKVAAAPPPPPPKAAP 203
           G++DVP+G  +CIIVE + D+AAF D++    P    S      P         PP   P
Sbjct: 279 GTRDVPLGAPLCIIVEKQEDIAAFADYR----PTEVTSLKPQAAPPAPPPVAAVPPTPQP 334

Query: 204 -APSPTPVPSQKTSGGTRVYASPLAKRLAAEKGLDLSSIGAGSGLFGSITSADL-----S 257
            AP+P+  P+       RV+ SPLAK+LAAEKG+DL+ +  G+G  G I   D+     S
Sbjct: 335 VAPTPSAAPAGPKG---RVFVSPLAKKLAAEKGIDLTQV-KGTGPEGRIIKKDIDSFVPS 390

Query: 258 KASKAGAVAAPSKSAK--PTANGPFTDLPVSGVRGVIAKRLLQSKQ-------------- 301
           KA+ A A A      +  P   G FTD+P+S +R VIA+RL+QSKQ              
Sbjct: 391 KAAPAAAAAMAPPGPRVAPAPAGVFTDIPISNIRRVIAQRLMQSKQTIPHYYLSVDVNMG 450

Query: 302 -VIKLREQMNKALEKRGAKLSINDFIIKATALASRRVPEANSSWQDTFIREYHSVDVSVA 360
            V+ +R+++NK LE +G K+S+NDFIIKA+ALA  +VPEANSSW DT IR+ H VDVSVA
Sbjct: 451 EVLLVRKELNKMLEGKG-KISVNDFIIKASALACLKVPEANSSWMDTVIRQNHVVDVSVA 509

Query: 361 VNTDKGLFTPIVFDADKKGLVDISNDSRSLISFRRPVKFSEESNDVKTLAAKAKEGKLQP 420
           V+T  GL TPIVF+A  KGL  I                   ++DV +LA+KA+EGKLQP
Sbjct: 510 VSTPAGLITPIVFNAHIKGLETI-------------------ASDVVSLASKAREGKLQP 550

Query: 421 HEFQ 424
           HEFQ
Sbjct: 551 HEFQ 554

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|P08461|ODP2_RAT Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial OS=Rattus norvegicus GN=Dlat PE=1 SV=3

 Score =  287 bits (734), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 182/363 (50%), Positives = 229/363 (63%), Gaps = 50/363 (13%)

Query: 84  RVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPA 143
           ++ LPALSPTM MGT+  W KK G+KL+EGDLLAEIETDKAT+GFE  EEGYLAKILVP 
Sbjct: 210 QIVLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPE 269

Query: 144 GSKDVPIGKLVCIIVENESDVAAFKDFKDDAPPAAGASAPAPPPPKVAAAPPPPPPKAAP 203
           G++DVP+G  +CIIVE + D+AAF D++    P    S     PP V       PP   P
Sbjct: 270 GTRDVPLGTPLCIIVEKQEDIAAFADYR----PTEVTSLKPQAPPPVPPPVAAVPPIPQP 325

Query: 204 -APSPTPVPSQKTSGGTRVYASPLAKRLAAEKGLDLSSIGAGSGLFGSITSADLSK---- 258
            AP+P+  P+       RV+ SPLAK+LAAEKG+DL+ +  G+G  G I   D+      
Sbjct: 326 LAPTPSAAPAGPKG---RVFVSPLAKKLAAEKGIDLTQV-KGTGPEGRIIKKDIDSFVPT 381

Query: 259 --ASKAGAVAAPSKSAKPTANGPFTDLPVSGVRGVIAKRLLQSKQ--------------- 301
             A  A A A P     PT  G F D+P+S +R VIA+RL+QSKQ               
Sbjct: 382 KAAPAAAAAAPPGPRVAPTPAGVFIDIPISNIRRVIAQRLMQSKQTIPHYYLSVDVNMGE 441

Query: 302 VIKLREQMNKALEKRGAKLSINDFIIKATALASRRVPEANSSWQDTFIREYHSVDVSVAV 361
           V+ +R+++NK LE +G K+S+NDFIIKA+ALA  +VPEANSSW DT IR+ H VDVSVAV
Sbjct: 442 VLLVRKELNKMLEGKG-KISVNDFIIKASALACLKVPEANSSWMDTVIRQNHVVDVSVAV 500

Query: 362 NTDKGLFTPIVFDADKKGLVDISNDSRSLISFRRPVKFSEESNDVKTLAAKAKEGKLQPH 421
           +T  GL TPIVF+A  KGL  I                   ++DV +LA+KA+EGKLQPH
Sbjct: 501 STPAGLITPIVFNAHIKGLETI-------------------ASDVVSLASKAREGKLQPH 541

Query: 422 EFQ 424
           EFQ
Sbjct: 542 EFQ 544

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|Q5M729|OPD23_ARATH Dihydrolipoyllysine-residue acetyltransferase component 3 of pyruvate dehydrogenase complex, mitochondrial OS=Arabidopsis thaliana GN=At1g54220 PE=1 SV=1

 Score =  246 bits (629), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 149/367 (40%), Positives = 205/367 (55%), Gaps = 51/367 (13%)

Query: 82  NDRVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILV 141
           +  + +P+LSPTM  G I  W KKEGDK+  G++L E+ETDKAT+  E  EEGYLAKI+ 
Sbjct: 111 HQEIGMPSLSPTMTEGNIARWLKKEGDKVAPGEVLCEVETDKATVEMECMEEGYLAKIVK 170

Query: 142 PAGSKDVPIGKLVCIIVENESDVAAFKDF----KDDAPPAAGASAPAPPPPKVAAAPPPP 197
             GSK++ +G+++ I VE+E D+  FKD+      DA P      PAPP  +    P  P
Sbjct: 171 AEGSKEIQVGEVIAITVEDEEDIGKFKDYTPSSTADAAPTKAEPTPAPPKEEKVKQPSSP 230

Query: 198 PPKAAPAPSPTPVPSQKTSGGTRVYASPLAKRLAAEKGLDLSSIGAGSGLFGSITSADLS 257
           P   A  PS  P        G RV+ASPLA++LA +  + LS I  G+G  G I  AD+ 
Sbjct: 231 PEPKASKPSTPPT-------GDRVFASPLARKLAEDNNVPLSDI-EGTGPEGRIVKADID 282

Query: 258 K---ASKAGAVAAPSKSAKPTANG-PFTDLPVSGVRGVIAKRLLQSKQVI---------- 303
           +   +S  GA A PSKS    A    + D+P S +R V A RL  SKQ I          
Sbjct: 283 EYLASSGKGATAKPSKSTDSKAPALDYVDIPHSQIRKVTASRLAFSKQTIPHYYLTVDTC 342

Query: 304 -----KLREQMNKALEKRGAK-LSINDFIIKATALASRRVPEANSSWQDTFIREYHSVDV 357
                 LR Q+N   E  G K +S+ND ++KA ALA R+VP+ NSSW D +IR++ +V++
Sbjct: 343 VDKLMALRSQLNSFKEASGGKRISVNDLVVKAAALALRKVPQCNSSWTDDYIRQFKNVNI 402

Query: 358 SVAVNTDKGLFTPIVFDADKKGLVDISNDSRSLISFRRPVKFSEESNDVKTLAAKAKEGK 417
           +VAV T+ GL+ P+V DAD+KGL  I                     +V+ LA KAKE  
Sbjct: 403 NVAVQTENGLYVPVVKDADRKGLSTI-------------------GEEVRLLAQKAKENS 443

Query: 418 LQPHEFQ 424
           L+P +++
Sbjct: 444 LKPEDYE 450

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|P12695|ODP2_YEAST Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=LAT1 PE=1 SV=1

 Score =  225 bits (574), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 143/377 (37%), Positives = 206/377 (54%), Gaps = 58/377 (15%)

Query: 85  VALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAG 144
           + +PALSPTM  G + +W KKEGD+L+ G+++AEIETDKA M FE  E+GYLAKILVP G
Sbjct: 37  IGMPALSPTMTQGNLAAWTKKEGDQLSPGEVIAEIETDKAQMDFEFQEDGYLAKILVPEG 96

Query: 145 SKDVPIGKLVCIIVENESDVAAFKDFK-DDAPPAAGASAPAPPPPKVAAAPPPPPPKAAP 203
           +KD+P+ K + + VE+++DV AFKDFK +D+   +  S  A P    A      P +   
Sbjct: 97  TKDIPVNKPIAVYVEDKADVPAFKDFKLEDSGSDSKTSTKAQPAEPQAEKKQEAPAEETK 156

Query: 204 APSPTPVPSQKTSGGTRVYASPLAKRLAAEKGLDLSSIGAGSGLFGSITSADLSK----- 258
             +P    S   +   R++ASPLAK +A EKG+ L  +  G+G  G IT AD+       
Sbjct: 157 TSAPEAKKSDVAAPQGRIFASPLAKTIALEKGISLKDVH-GTGPRGRITKADIESYLEKS 215

Query: 259 --------------ASKAGAVAAPSKSAKPTANGPFTDLPVSGVRGVIAKRLLQSKQ--- 301
                          + A +      +  P++   + D+P+S +R +I +RLLQS Q   
Sbjct: 216 SKQSSQTSGAAAATPAAATSSTTAGSAPSPSSTASYEDVPISTMRSIIGERLLQSTQGIP 275

Query: 302 ------------VIKLREQMNKALEKRGAKLSINDFIIKATALASRRVPEANSSW--QDT 347
                       ++KLR+ +N A      KLSIND ++KA  +A++RVP+AN+ W   + 
Sbjct: 276 SYIVSSKISISKLLKLRQSLN-ATANDKYKLSINDLLVKAITVAAKRVPDANAYWLPNEN 334

Query: 348 FIREYHSVDVSVAVNTDKGLFTPIVFDADKKGLVDISNDSRSLISFRRPVKFSEESNDVK 407
            IR++ +VDVSVAV T  GL TPIV + + KGL  I                   SN++K
Sbjct: 335 VIRKFKNVDVSVAVATPTGLLTPIVKNCEAKGLSQI-------------------SNEIK 375

Query: 408 TLAAKAKEGKLQPHEFQ 424
            L  +A+  KL P EFQ
Sbjct: 376 ELVKRARINKLAPEEFQ 392

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|Q8RWN9|OPD22_ARATH Dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial OS=Arabidopsis thaliana GN=At3g13930 PE=1 SV=2

 Score =  222 bits (566), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 143/365 (39%), Positives = 203/365 (55%), Gaps = 47/365 (12%)

Query: 82  NDRVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILV 141
           +  + +P+LSPTM  G I  W KKEGDK+  G++L E+ETDKAT+  E  EEG+LAKI+ 
Sbjct: 111 HQEIGMPSLSPTMTEGNIARWLKKEGDKVAPGEVLCEVETDKATVEMECMEEGFLAKIVK 170

Query: 142 PAGSKDVPIGKLVCIIVENESDVAAFKDF--KDDAPPAAGASAPAPPPPKVAAAPPPPPP 199
             G+K++ +G+++ I VE+E D+  FKD+    D  PAA  + PAP  PK      P   
Sbjct: 171 EEGAKEIQVGEVIAITVEDEDDIQKFKDYTPSSDTGPAAPEAKPAPSLPKEEKVEKPASA 230

Query: 200 KAAPAPSPTPVPSQKTSGGTRVYASPLAKRLAAEKGLDLSSIGAGSGLFGSITSADLSKA 259
             A    P+  PS+      R++ASPLA++LA +  + LSSI  G+G  G I  AD+   
Sbjct: 231 PEAKISKPSSAPSED-----RIFASPLARKLAEDNNVPLSSI-KGTGPEGRIVKADVEDF 284

Query: 260 SKAGA---VAAPSKSAKPTANG-PFTDLPVSGVRGVIAKRLLQSKQVI------------ 303
             +G+    A PSK          + D+P + +R V A RL  SKQ I            
Sbjct: 285 LASGSKETTAKPSKQVDSKVPALDYVDIPHTQIRKVTASRLAFSKQTIPHYYLTVDTCVD 344

Query: 304 ---KLREQMNKALEKRGAK-LSINDFIIKATALASRRVPEANSSWQDTFIREYHSVDVSV 359
               LR Q+N   E  G K +S+ND +IKA ALA R+VP+ NSSW D +IR++ +V+++V
Sbjct: 345 KMMGLRSQLNSFQEASGGKRISVNDLVIKAAALALRKVPQCNSSWTDEYIRQFKNVNINV 404

Query: 360 AVNTDKGLFTPIVFDADKKGLVDISNDSRSLISFRRPVKFSEESNDVKTLAAKAKEGKLQ 419
           AV T+ GL+ P+V DADKKGL  I                     +V+ LA KAKE  L+
Sbjct: 405 AVQTENGLYVPVVKDADKKGLSTI-------------------GEEVRFLAQKAKENSLK 445

Query: 420 PHEFQ 424
           P +++
Sbjct: 446 PEDYE 450

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|O59816|ODP2_SCHPO Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=lat1 PE=3 SV=1

 Score =  219 bits (559), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 144/366 (39%), Positives = 200/366 (54%), Gaps = 53/366 (14%)

Query: 85  VALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAG 144
           + +PALSPTM  G I ++ KK GDK+  GD+L EIETDKA + FE  +EGYLAKIL+  G
Sbjct: 56  INMPALSPTMTTGNIGAFQKKIGDKIEPGDVLCEIETDKAQIDFEQQDEGYLAKILIETG 115

Query: 145 SKDVPIGKLVCIIVENESDVAAFKDFKDDAPPAAGASAPAPPPPKVAAAPPPPPPKAAPA 204
           +KDVP+GK + + VENE DVAA  DF  +   A   SA +        + P    ++   
Sbjct: 116 TKDVPVGKPLAVTVENEGDVAAMADFTIEDSSAKEPSAKSGE----EKSAPSSEKQSKET 171

Query: 205 PSPTPVPSQKTSGGTRVYASPLAKRLAAEKGLDLSSIGAGSGLFGSITSADL-------- 256
            SP+ V  ++   G RV+ASPLA++LA EK LDLS I  GSG  G I   D+        
Sbjct: 172 SSPSNVSGEER--GDRVFASPLARKLAEEKDLDLSQI-RGSGPNGRIIKVDIENFKPVVA 228

Query: 257 ---SKASKAGAVAAPSKSAKPTANGPFTDLPVSGVRGVIAKRLLQSK------------- 300
              S  + A A    + +A   A G + DLP+S +R +IA RL +SK             
Sbjct: 229 PKPSNEAAAKATTPAASAADAAAPGDYEDLPLSNMRKIIASRLAESKNMNPHYYVTVSVN 288

Query: 301 --QVIKLREQMNKALEKRGAKLSINDFIIKATALASRRVPEANSSWQDTFIREYHSVDVS 358
             ++I+LR  +N   + R  KLS+ND +IKAT  A R+VPE N++W   FIR+Y +VD+S
Sbjct: 289 MEKIIRLRAALNAMADGR-YKLSVNDLVIKATTAALRQVPEVNAAWMGDFIRQYKNVDIS 347

Query: 359 VAVNTDKGLFTPIVFDADKKGLVDISNDSRSLISFRRPVKFSEESNDVKTLAAKAKEGKL 418
           +AV T  GL TP++ +    GL +IS  +                   K    +A+  KL
Sbjct: 348 MAVATPSGLITPVIRNTHALGLAEISTLA-------------------KDYGQRARNNKL 388

Query: 419 QPHEFQ 424
           +P E+Q
Sbjct: 389 KPEEYQ 394

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|Q1RJT3|ODP2_RICBR Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Rickettsia bellii (strain RML369-C) GN=pdhC PE=3 SV=1

 Score =  216 bits (551), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 133/358 (37%), Positives = 201/358 (56%), Gaps = 49/358 (13%)

Query: 84  RVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPA 143
           ++ +PALSPTM  G +  W KKEGDK+N G+++AEIETDKATM  E  +EG LAKI++P 
Sbjct: 4   KLLMPALSPTMTEGNLARWLKKEGDKINPGEVIAEIETDKATMEVEAVDEGTLAKIIIPQ 63

Query: 144 GSKDVPIGKLVCIIVENESDVAAFKDFKDDAPPAAGASAPAPPPPKVAAAPPPPPPKAAP 203
           GS++VP+  L+ +++E   +++  ++F       A  ++ +P   +++       P+   
Sbjct: 64  GSQNVPVNSLIAVLIEEGEELSGIEEF------IAKNNSNSPKKEEISKPAETIAPQNVK 117

Query: 204 APSPTPVPSQKTSGGTRVYASPLAKRLAAEKGLDLSSIGAGSGLFGSITSAD-LSKASKA 262
             + T    Q      +V+ASPLAKRLA  + + +  I  GSG  G I   D LS    +
Sbjct: 118 EENITTASDQ---NNIKVFASPLAKRLAKIQNVRIEEI-KGSGPHGRIIKQDVLSHKGGS 173

Query: 263 GAVAAPSKSAKPTANGPFTDLPVSGVRGVIAKRLLQSKQ---------------VIKLRE 307
            A++    S  P     +   P + +R +IAKRLL+SKQ               ++ +RE
Sbjct: 174 KALSNKIVSRNPE---EYRLAPNNNIRKIIAKRLLESKQTVPHFYLSIECNVDKLLDIRE 230

Query: 308 QMNKAL-EKRGAKLSINDFIIKATALASRRVPEANSSWQDTFIREYHSVDVSVAVNTDKG 366
            +NK+  + + AK+S+NDFII A A A + VP AN+SW D  IR Y++VD+SVAV  + G
Sbjct: 231 DINKSFGDDKSAKISVNDFIILAVAKALQEVPNANASWGDDAIRYYNNVDISVAVAIENG 290

Query: 367 LFTPIVFDADKKGLVDISNDSRSLISFRRPVKFSEESNDVKTLAAKAKEGKLQPHEFQ 424
           L TPI+ +AD+K +VD+S++ + LI                    KA+E KL P EFQ
Sbjct: 291 LVTPIIRNADQKNIVDLSSEMKGLIK-------------------KARENKLTPEEFQ 329

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Rickettsia bellii (strain RML369-C) (taxid: 336407)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|P36413|ODP2_DICDI Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial OS=Dictyostelium discoideum GN=pdhC PE=1 SV=2

 Score =  215 bits (547), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 143/366 (39%), Positives = 192/366 (52%), Gaps = 54/366 (14%)

Query: 85  VALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPE-EGYLAKILVPA 143
           V +PALSP+ME G I SW KKEGD++  GD +AE+ETDKATM F+  +  GYLAKILVP 
Sbjct: 209 VGMPALSPSMETGGIASWTKKEGDQIKAGDAIAEVETDKATMDFQYEDGNGYLAKILVPG 268

Query: 144 GSKDVPIGKLVCIIVENESDVAAFKDFKDDAPPAAGASAPAPPPPKVAAAPPPPPPKAAP 203
           G+  + I + VCIIV+N+ D   F D+          S+ +    + +            
Sbjct: 269 GTSGIQINQPVCIIVKNKEDCDKFADYS-----VEEQSSSSSSSSQESTPSSSSSSSQES 323

Query: 204 APSPTPVPSQKTSGGTRVYASPLAKRLAAEKGLDLSSIGAGSGLFGSITSADL------- 256
            PS +         G R++A+P A+  A+ KG DLS+I  G+G    I  AD+       
Sbjct: 324 TPSQSSSQQTTRKSGERIFATPAARFEASSKGYDLSAIN-GTGPNNRILKADVLEFVPQK 382

Query: 257 ---SKASKAGAVAAPSKSAKPTANGPFTDLPVSGVRGVIAKRLLQSKQVI---------- 303
              ++  +        K   PT++G FTD+P S +R V A RL +SKQ I          
Sbjct: 383 QEVAQQQQQQTTTTTKKPTTPTSSGEFTDIPHSNIRKVTAARLTESKQTIPHYYLTMECR 442

Query: 304 -----KLREQMNKALEKRGAKLSINDFIIKATALASRRVPEANSSWQDTFIREYHSVDVS 358
                KLR ++N        K+S+NDFI+KA+A A R  P  NS+W D FIR YH++D++
Sbjct: 443 VDKLLKLRSELNAM---NTVKISVNDFIVKASAAALRDNPVVNSTWTDQFIRRYHNIDIN 499

Query: 359 VAVNTDKGLFTPIVFDADKKGLVDISNDSRSLISFRRPVKFSEESNDVKTLAAKAKEGKL 418
           VAVNT +GLFTPIV   D KGL  I                   S  VK LA KA+ GKL
Sbjct: 500 VAVNTPQGLFTPIVRGVDMKGLNSI-------------------STSVKQLAEKAQNGKL 540

Query: 419 QPHEFQ 424
            P EF+
Sbjct: 541 HPSEFE 546

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	426
321463356	502	hypothetical protein DAPPUDRAFT_188759 [	0.744	0.631	0.564	1e-103
328696627	492	PREDICTED: dihydrolipoyllysine-residue a	0.730	0.632	0.568	1e-95
332375672	501	unknown [Dendroctonus ponderosae]	0.734	0.624	0.557	8e-95
158297231	512	AGAP007975-PA [Anopheles gambiae str. PE	0.755	0.628	0.590	9e-95
332023094	487	Dihydrolipoyllysine-residue acetyltransf	0.732	0.640	0.560	1e-94
170062538	512	dihydrolipoamide acetyltransferase compo	0.755	0.628	0.596	2e-93
157105359	503	dihydrolipoamide acetyltransferase compo	0.755	0.640	0.601	2e-93
341883307	507	hypothetical protein CAEBREN_15446 [Caen	0.727	0.611	0.529	4e-92
156545418	489	PREDICTED: dihydrolipoyllysine-residue a	0.744	0.648	0.587	7e-92
383864431	494	PREDICTED: dihydrolipoyllysine-residue a	0.753	0.649	0.583	1e-91

>gi|321463356|gb|EFX74372.1| hypothetical protein DAPPUDRAFT_188759 [Daphnia pulex]

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 205/363 (56%), Positives = 246/363 (67%), Gaps = 46/363 (12%)

Query: 82  NDRVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILV 141
           + RV LPALSPTME GT++SW K+EGDKLNEGDLLAEIETDKATMGFETPEEGYLAKI++
Sbjct: 77  HKRVELPALSPTMESGTLISWEKQEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKIMI 136

Query: 142 PAGSKDVPIGKLVCIIVENESDVAAFKDFKDDAPPAAGASAPAPPPPKVAAAPPPPPPKA 201
           PAGSKDVPIGKLVCIIVE   DVAAFKDFKDD      A+  A   P++          A
Sbjct: 137 PAGSKDVPIGKLVCIIVEKAEDVAAFKDFKDDGAAV--AAPAASQQPEIITPSQSSVATA 194

Query: 202 APAPSPTPVPSQKTSGGTRVYASPLAKRLAAEKGLDLSSIGAGSGLFGSITSADLSKASK 261
           AP PS T   S +     RV+ASPLA+++AAEKG+ L+S+  GSG  GSIT+ DL K S 
Sbjct: 195 APVPSSTAATSSE-----RVFASPLARKMAAEKGISLASVSGGSGFEGSITAKDLDKVSV 249

Query: 262 A-----GAVAAPSKSAKPTANGPFTDLPVSGVRGVIAKRLLQSKQ--------------- 301
           A           +   +  A   +TDLPV+ +RGVIAKRLLQSKQ               
Sbjct: 250 APKPVAAVPPTAAAPIQAVAGQKYTDLPVTNIRGVIAKRLLQSKQSIPHYYLTVDVTMDS 309

Query: 302 VIKLREQMNKALEKRGAKLSINDFIIKATALASRRVPEANSSWQDTFIREYHSVDVSVAV 361
           V+ LR++ N  L K GAKLS+NDF+IKA ALA R+VPE NSSWQ+TFIR+Y +VD+SVAV
Sbjct: 310 VLSLRQEFNTLLGKDGAKLSVNDFVIKAAALACRKVPEVNSSWQETFIRQYDTVDISVAV 369

Query: 362 NTDKGLFTPIVFDADKKGLVDISNDSRSLISFRRPVKFSEESNDVKTLAAKAKEGKLQPH 421
           +TD+GL TPIVF+A++KGL  I                   S DV+TLA KA++GKLQPH
Sbjct: 370 STDRGLITPIVFNAERKGLASI-------------------SADVRTLAGKARDGKLQPH 410

Query: 422 EFQ 424
           EFQ
Sbjct: 411 EFQ 413

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328696627|ref|XP_001943838.2| PREDICTED: dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial-like [Acyrthosiphon pisum]

 Score =  356 bits (913), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 208/366 (56%), Positives = 244/366 (66%), Gaps = 55/366 (15%)

Query: 84  RVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPA 143
           +VALPALSPTME GTI++W KKEG++LNEGD LAEIETDKA M FETPEEGYLAKI+VPA
Sbjct: 70  KVALPALSPTMESGTIINWTKKEGERLNEGDKLAEIETDKAIMDFETPEEGYLAKIMVPA 129

Query: 144 GSKDVPIGKLVCIIVENESDVAAFKDFKDDA------PPAAGASAPAPPPPKVAAAPPPP 197
           G KDV +GKLVCIIVENESDVAAFKDF D+       P A   S            P P 
Sbjct: 130 GQKDVTVGKLVCIIVENESDVAAFKDFVDNTSAGAPAPAAPSPSPKPSTSAPAPPPPAPV 189

Query: 198 PPKAAPAPSPTPVPSQKTSGGTRVYASPLAKRLAAEKGLDLSSIGAGSGLFGSITSADLS 257
            PKA+      P+P      G+R+ ASPLAKRLA EKGLDLS+I  GSGLFGSI S DL 
Sbjct: 190 APKASAPTKSVPIPI-----GSRILASPLAKRLATEKGLDLSTIRQGSGLFGSIKSTDLD 244

Query: 258 KASKAGAVAAPSKSAKPTANG----PFTDLPVSGVRGVIAKRLLQSKQ------------ 301
           KAS    + +  K+A   A+G     F D PV+ VR +IAKRLL+SKQ            
Sbjct: 245 KAS----ITSSQKTA--VADGIRGDGFVDKPVTNVRKIIAKRLLESKQTIPHYYLTVDLG 298

Query: 302 ---VIKLREQMNKALEKRGAKLSINDFIIKATALASRRVPEANSSWQDTFIREYHSVDVS 358
              ++ LR++MN+ LEK G KLSINDFIIKA ALA ++VPEANSSW D FIR+Y +VDVS
Sbjct: 299 LDNIVSLRKRMNELLEKEGVKLSINDFIIKAAALACKKVPEANSSWMDNFIRQYDAVDVS 358

Query: 359 VAVNTDKGLFTPIVFDADKKGLVDISNDSRSLISFRRPVKFSEESNDVKTLAAKAKEGKL 418
           VAV+T+ GL TPIVF+AD KGL+ I                   S DVK LAAKA++GKL
Sbjct: 359 VAVSTETGLITPIVFNADTKGLIAI-------------------STDVKELAAKARQGKL 399

Query: 419 QPHEFQ 424
           QP E+Q
Sbjct: 400 QPQEYQ 405

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332375672|gb|AEE62977.1| unknown [Dendroctonus ponderosae]

 Score =  353 bits (907), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 204/366 (55%), Positives = 242/366 (66%), Gaps = 53/366 (14%)

Query: 84  RVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPA 143
           RV LPALSPTME+GTI+SW KKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKIL+PA
Sbjct: 75  RVTLPALSPTMELGTIISWEKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILIPA 134

Query: 144 GSKDVPIGKLVCIIVENESDVAAFKDFKDDAPPAAGASAPAPPPPKVAAAPPPPPPKAAP 203
           GSKDVPIGKLVCIIVENE+D+ AFKDFKDD   A   +A  PPP    +A         P
Sbjct: 135 GSKDVPIGKLVCIIVENEADLTAFKDFKDDEVAAPPKAAAPPPPSAAPSA-------PTP 187

Query: 204 APSPTPVPSQKTSGGTRVYASPLAKRLAAEKGLDLSSIGAGSGLFGSITSADLSKASKAG 263
             +             RVYASP+AKRLA ++ + L   G G+GLFG+ITS+DL   + A 
Sbjct: 188 TAAAPAGAPANVGATDRVYASPMAKRLAEQRNIRLQ--GKGTGLFGAITSSDLGAQAPAA 245

Query: 264 AVAAPSK----------SAKPTANGPFTDLPVSGVRGVIAKRLLQSKQVI---------- 303
              +              A P+A GP+ D+PVS +R  IAKRLLQSKQ+I          
Sbjct: 246 GAPSAPAPGAPSGPAVLHAAPSAPGPYVDIPVSNIRKTIAKRLLQSKQLIPHYYLTQEIN 305

Query: 304 -----KLREQMNKALEKRGAKLSINDFIIKATALASRRVPEANSSWQDTFIREYHSVDVS 358
                K+R + NK LEK G KLS+NDFIIKATA+AS++VPEANS W D+ IR+Y +VDVS
Sbjct: 306 VDALLKVRAKYNKKLEKSGVKLSVNDFIIKATAVASQKVPEANSHWFDSTIRQYKNVDVS 365

Query: 359 VAVNTDKGLFTPIVFDADKKGLVDISNDSRSLISFRRPVKFSEESNDVKTLAAKAKEGKL 418
           VAV+TDKGL TPIV++A+ KG+V I                   S  VK LAAKA++GKL
Sbjct: 366 VAVSTDKGLITPIVWEANNKGVVQI-------------------SRTVKELAAKARDGKL 406

Query: 419 QPHEFQ 424
           QP EFQ
Sbjct: 407 QPQEFQ 412

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158297231|ref|XP_317493.4| AGAP007975-PA [Anopheles gambiae str. PEST] gi|157015094|gb|EAA12479.4| AGAP007975-PA [Anopheles gambiae str. PEST]

 Score =  353 bits (906), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 218/369 (59%), Positives = 252/369 (68%), Gaps = 47/369 (12%)

Query: 82  NDRVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILV 141
           + +V LPALSPTME+GTIVSW KKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILV
Sbjct: 76  HSKVLLPALSPTMELGTIVSWEKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILV 135

Query: 142 PAGSKDVPIGKLVCIIVENESDVAAFKDFKDDAPPAAGASAPAPPPPKVAAAPPPPPPKA 201
           PAG KDVPIGKLVCIIVENE+DVAAFKD+KD    A  A+A AP PP  AAAPP P P  
Sbjct: 136 PAGQKDVPIGKLVCIIVENEADVAAFKDYKDTGGAAKPAAAAAPAPPPPAAAPPTPTPPP 195

Query: 202 APAPSPTPVPSQKTSG-------GTRVYASPLAKRLAAEKGLDLSSIGAGSGLFGSITSA 254
             A  P P  +            G RVYASP+AK+LA ++ L L   G GSGLFGS+TS 
Sbjct: 196 VAAAPPPPPMAAAPQPMTAVEQRGPRVYASPMAKKLAEQQRLRLE--GKGSGLFGSLTSK 253

Query: 255 DLSKASKAGAVAAPSKSAKPTANGP----FTDLPVSGVRGVIAKRLLQSK---------- 300
           DL+    AGA  +   +    A+ P    + DLPVS +RGVIAKRLL+SK          
Sbjct: 254 DLAGMQAAGAAPSAGGAPATAASIPAGAAYVDLPVSNIRGVIAKRLLESKTTIPHYYLTV 313

Query: 301 -----QVIKLREQMNKALEKRGAKLSINDFIIKATALASRRVPEANSSWQDTFIREYHSV 355
                QV KLR + NK LEK G KLSINDF+IKA A+A ++VPEANS+W DT IR++ +V
Sbjct: 314 DVNMDQVTKLRARFNKQLEKEGVKLSINDFVIKAAAMACKKVPEANSAWMDTVIRQFDAV 373

Query: 356 DVSVAVNTDKGLFTPIVFDADKKGLVDISNDSRSLISFRRPVKFSEESNDVKTLAAKAKE 415
           DVSVAV+TD+GL TPIVF AD+KG+ DI                   S DVK LAAKA++
Sbjct: 374 DVSVAVSTDRGLITPIVFSADRKGIADI-------------------SKDVKNLAAKARD 414

Query: 416 GKLQPHEFQ 424
           GKLQP EFQ
Sbjct: 415 GKLQPQEFQ 423

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332023094|gb|EGI63357.1| Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial [Acromyrmex echinatior]

 Score =  352 bits (904), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 200/357 (56%), Positives = 234/357 (65%), Gaps = 45/357 (12%)

Query: 84  RVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPA 143
           +V LPALSPTME GTI+SW KKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPA
Sbjct: 69  KVPLPALSPTMETGTIISWQKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPA 128

Query: 144 GSKDVPIGKLVCIIVENESDVAAFKDFKDDAPPAAGASAPAPPPPKVAAAPPPPPPKAAP 203
           G+K+VPIGKLVCIIV++ES+VAAFKDFKDD   A         P       P  P  +A 
Sbjct: 129 GTKNVPIGKLVCIIVQDESNVAAFKDFKDDTMAAPPPKPTTITPASPTITTPVAPSVSAV 188

Query: 204 APSPTPVPSQKTSGGTRVYASPLAKRLAAEKGLDLSSIGAGSGLFGSITSADLSKASKAG 263
           A  P+ VP  K     R+YASPLAK+LAAEKGL L  +  G+GL+ SITS DL      G
Sbjct: 189 AKVPSIVPPSK----ERIYASPLAKKLAAEKGLSLQGL-KGTGLYDSITSKDLE-----G 238

Query: 264 AVAAPSKSAKPTANGPF-TDLPVSGVRGVIAKRLLQSKQ---------------VIKLRE 307
           AV  P +    +   P   D+P+S +R +IAKRL +SKQ               V+ +RE
Sbjct: 239 AVVQPLQPVITSIGAPTGIDIPISNIRAIIAKRLSESKQTIPHYYLSVDIKMDPVLAMRE 298

Query: 308 QMNKALEKRGAKLSINDFIIKATALASRRVPEANSSWQDTFIREYHSVDVSVAVNTDKGL 367
           Q NK LEK   KLSIND IIK  A+A ++VPE NS+W    IR+Y++VDVSVAV+TD GL
Sbjct: 299 QFNKLLEKDKIKLSINDIIIKGMAMACKKVPEGNSAWLGNIIRQYNNVDVSVAVSTDSGL 358

Query: 368 FTPIVFDADKKGLVDISNDSRSLISFRRPVKFSEESNDVKTLAAKAKEGKLQPHEFQ 424
            TPIVF AD KG+V I                   S DVK LA KA+EGKL+PHEFQ
Sbjct: 359 ITPIVFGADVKGIVQI-------------------SKDVKALAMKAREGKLKPHEFQ 396

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170062538|ref|XP_001866712.1| dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase [Culex quinquefasciatus] gi|167880446|gb|EDS43829.1| dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase [Culex quinquefasciatus]

 Score =  349 bits (895), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 220/369 (59%), Positives = 253/369 (68%), Gaps = 47/369 (12%)

Query: 82  NDRVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILV 141
           + +V LPALSPTME+GTIVSW KKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILV
Sbjct: 76  HSKVMLPALSPTMELGTIVSWEKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILV 135

Query: 142 PAGSKDVPIGKLVCIIVENESDVAAFKDFKDDAPPAAGASAPAPPPPKVAAAPPPPPPKA 201
            AG KDVPIGKLVCIIVENE+DVAAFKD+KD   PAA  +A A PPP  AA P   PP  
Sbjct: 136 QAGQKDVPIGKLVCIIVENEADVAAFKDYKDTGAPAAAPAAAAAPPPPAAAPPVATPPPM 195

Query: 202 APAPSPTPVPSQKTSG-------GTRVYASPLAKRLAAEKGLDLSSIGAGSGLFGSITSA 254
           A AP P P      +        G RVYASP+AK+LA ++ L L   G GSGLFGS+TS 
Sbjct: 196 AAAPPPPPAAPAAAAPLTAVEQRGPRVYASPMAKKLAEQQRLRLE--GRGSGLFGSLTSK 253

Query: 255 DL----SKASKAGAVAAPSKSAKPTANGPFTDLPVSGVRGVIAKRLLQSK---------- 300
           DL    +  + A A A  +  AK  A   + DLPVS +RGVIAKRLL+SK          
Sbjct: 254 DLAGMQAAGAPAAAHAPAAGPAKIPAGAAYVDLPVSNIRGVIAKRLLESKTTIPHYYLTV 313

Query: 301 -----QVIKLREQMNKALEKRGAKLSINDFIIKATALASRRVPEANSSWQDTFIREYHSV 355
                Q+ KLR + NK LEK G KLSINDFIIKA A+A ++VPEANS+W DT IR++ +V
Sbjct: 314 DCNMDQINKLRAKFNKQLEKDGVKLSINDFIIKAAAMACKKVPEANSAWMDTVIRQFDAV 373

Query: 356 DVSVAVNTDKGLFTPIVFDADKKGLVDISNDSRSLISFRRPVKFSEESNDVKTLAAKAKE 415
           DVSVAV+TD+GL TPIVF AD+KGL DI                   S DVK+LAAKA++
Sbjct: 374 DVSVAVSTDRGLITPIVFGADRKGLADI-------------------SKDVKSLAAKARD 414

Query: 416 GKLQPHEFQ 424
           GKLQP EFQ
Sbjct: 415 GKLQPQEFQ 423

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157105359|ref|XP_001648832.1| dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase [Aedes aegypti] gi|108880101|gb|EAT44326.1| AAEL004294-PA [Aedes aegypti]

 Score =  348 bits (894), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 219/364 (60%), Positives = 252/364 (69%), Gaps = 42/364 (11%)

Query: 82  NDRVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILV 141
           +++V LPALSPTME+GTIVSW KKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILV
Sbjct: 72  HNKVLLPALSPTMELGTIVSWEKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILV 131

Query: 142 PAGSKDVPIGKLVCIIVENESDVAAFKDFKDDAPPAAGASAPAPPPPKVAAAPPPPPPKA 201
           PAG KDVPIGKLVCIIVENE+DVAAFKD+KD   PAA  +APAPP    A   P PPP A
Sbjct: 132 PAGQKDVPIGKLVCIIVENEADVAAFKDYKDTGAPAAKPAAPAPPAAAAAPPVPTPPPVA 191

Query: 202 APAPSPTPVPSQKT---SGGTRVYASPLAKRLAAEKGLDLSSIGAGSGLFGSITSADLSK 258
           A  P     P+  T     G RVYASP+AK+LA ++ L L   G GSGL+GS+TS DL+ 
Sbjct: 192 AAPPPMAAAPAPMTAVEQRGPRVYASPMAKKLAEQQRLRLE--GRGSGLYGSLTSKDLAG 249

Query: 259 ASKAGAVAAPSKSAKPT---ANGPFTDLPVSGVRGVIAKRLLQSKQVI------------ 303
              AGA  A + +A      A   + D+PVS +RGVIAKRLL+SK  I            
Sbjct: 250 LQAAGAPEARAAAAGAPSVPAGAAYVDIPVSNIRGVIAKRLLESKTTIPHYYLTVDVNMD 309

Query: 304 ---KLREQMNKALEKRGAKLSINDFIIKATALASRRVPEANSSWQDTFIREYHSVDVSVA 360
              KLR + NK LE  G KLSINDFIIKA ALA ++VPEANS+W DT IR++ +VDVSVA
Sbjct: 310 KINKLRSKFNKQLENDGVKLSINDFIIKAAALACKKVPEANSAWMDTVIRQFDAVDVSVA 369

Query: 361 VNTDKGLFTPIVFDADKKGLVDISNDSRSLISFRRPVKFSEESNDVKTLAAKAKEGKLQP 420
           V+TD+GL TPIVF AD+KGL DI                   S DVK LAAKA++GKLQP
Sbjct: 370 VSTDRGLITPIVFSADRKGLSDI-------------------SKDVKNLAAKARDGKLQP 410

Query: 421 HEFQ 424
            EFQ
Sbjct: 411 QEFQ 414

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|341883307|gb|EGT39242.1| hypothetical protein CAEBREN_15446 [Caenorhabditis brenneri]

 Score =  345 bits (884), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 200/378 (52%), Positives = 252/378 (66%), Gaps = 68/378 (17%)

Query: 82  NDRVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILV 141
           ++RVALPALSPTME+GT+VSW KKEGD+L+EGDLL EIETDKATMGFETPEEGYLAKIL+
Sbjct: 75  HNRVALPALSPTMELGTVVSWQKKEGDQLSEGDLLCEIETDKATMGFETPEEGYLAKILI 134

Query: 142 PAGSKDVPIGKLVCIIVENESDVAAFKDFKDDAPPAAGASAP-----APPPPKVAAA--- 193
             GSKDVPIGKL+CIIVE+E+DVAAFKDFKDD+  +AG SAP     AP  PK ++    
Sbjct: 135 QEGSKDVPIGKLLCIIVESEADVAAFKDFKDDS-SSAGGSAPAKAEKAPEQPKQSSPPAA 193

Query: 194 --------PPPPPPKAAPAPSPTPVPSQKTSGGTRVYASPLAKRLAAEKGLDLSSIGAGS 245
                    PP  P++AP P P       +SG  RV ASP AK+LAAE+GLDLS +  GS
Sbjct: 194 SAPSTPMYQPPSVPQSAPVPPP-------SSG--RVSASPFAKKLAAEQGLDLSGV-TGS 243

Query: 246 GLFGSITSADLSKASKAGAVAAPSKSAKPTANGPFTDLPVSGVRGVIAKRLLQSKQVI-- 303
           G  G I ++DLS+A   GA +  +++A   +   +TD+P++ +R  IAKRL +SK  I  
Sbjct: 244 GPGGRILASDLSQAPAKGATSTTTQAA---SGQDYTDIPLTNMRKTIAKRLTESKSTIPH 300

Query: 304 -------------KLREQMNKALEK----RGAKLSINDFIIKATALASRRVPEANSSWQD 346
                        ++RE++N  L K    +  K+SINDFIIKA+ALA +RVPEANS W D
Sbjct: 301 YYLTSEIQLDTLLQVREKLNGLLAKGTSGQATKISINDFIIKASALACQRVPEANSYWMD 360

Query: 347 TFIREYHSVDVSVAVNTDKGLFTPIVFDADKKGLVDISNDSRSLISFRRPVKFSEESNDV 406
           +FIRE H VDVSVAV+T  GL TPI+F+A  KGL  I                   ++++
Sbjct: 361 SFIRENHHVDVSVAVSTPAGLITPIIFNAHAKGLATI-------------------ASEI 401

Query: 407 KTLAAKAKEGKLQPHEFQ 424
             LA +A+EGKLQPHEFQ
Sbjct: 402 VELAQRAREGKLQPHEFQ 419

Source: Caenorhabditis brenneri

Species: Caenorhabditis brenneri

Genus: Caenorhabditis

Family: Rhabditidae

Order: Rhabditida

Class: Chromadorea

Phylum: Nematoda

Superkingdom: Eukaryota

>gi|156545418|ref|XP_001606561.1| PREDICTED: dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial-like [Nasonia vitripennis]

 Score =  343 bits (881), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 209/356 (58%), Positives = 239/356 (67%), Gaps = 39/356 (10%)

Query: 84  RVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPA 143
           +V LPALSPTME GTI+SW KKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPA
Sbjct: 70  KVPLPALSPTMETGTIISWQKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPA 129

Query: 144 GSKDVPIGKLVCIIVENESDVAAFKDFKDDAPPAAGASAPAPPPPKVAAAPPPPPPKAAP 203
           G K+V IG+LVCIIV +E  VAAFKD+KDD    A A   AP PP  AA    PPP  A 
Sbjct: 130 GEKNVTIGRLVCIIVADEGSVAAFKDYKDDGSTVAAAPPSAPAPPPPAAPAAVPPPPKAA 189

Query: 204 APSPTPVPSQKTSGGTRVYASPLAKRLAAEKGLDLSSIGAGSGLFGSITSADLSKASKAG 263
           AP+    PS  TS G RV+ASPLA+RLA+E+GL L  +  GSGLFGS+T+ DL+ AS AG
Sbjct: 190 APAAVSTPSLATS-GERVFASPLARRLASEQGLSLQGL-KGSGLFGSVTAKDLAGASPAG 247

Query: 264 AVAAPSKSAKPTANGPFTDLPVSGVRGVIAKRLLQSKQVI---------------KLREQ 308
             A    +          D+P+S VRGVIAKRLL+SKQ I                +R+Q
Sbjct: 248 VGAPAGAAVAAPGG---KDIPISNVRGVIAKRLLESKQTIPHYYLTIEVKMDEALSMRQQ 304

Query: 309 MNKALEKRGAKLSINDFIIKATALASRRVPEANSSWQDTFIREYHSVDVSVAVNTDKGLF 368
            NK LEK   KLS+ND IIK  A+A ++VPE NS+W    IR+Y  VDVSVAV+TD GL 
Sbjct: 305 FNKLLEKEKIKLSVNDLIIKGMAMACKKVPEGNSAWLGDKIRQYDHVDVSVAVSTDNGLI 364

Query: 369 TPIVFDADKKGLVDISNDSRSLISFRRPVKFSEESNDVKTLAAKAKEGKLQPHEFQ 424
           TPIVF AD KG+V I                   SNDVK LAAKA+EGKLQPHEFQ
Sbjct: 365 TPIVFGADVKGIVQI-------------------SNDVKALAAKAREGKLQPHEFQ 401

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383864431|ref|XP_003707682.1| PREDICTED: dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial-like [Megachile rotundata]

 Score =  343 bits (880), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 209/358 (58%), Positives = 241/358 (67%), Gaps = 37/358 (10%)

Query: 84  RVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPA 143
           +V LPALSPTME GTI+SW KKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPA
Sbjct: 69  KVQLPALSPTMETGTIISWQKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPA 128

Query: 144 GSKDVPIGKLVCIIVENESDVAAFKDFKDDAPPAAGASAPAPPPPKVAAAPPPPPPKAAP 203
           G+K+VPIGKLVCIIV +E+ VAAFKDFKDD+P     SAPAP P   A  P  PPP    
Sbjct: 129 GTKNVPIGKLVCIIVSDEASVAAFKDFKDDSPDTPAPSAPAPAPTPAAPTPSTPPPSPVT 188

Query: 204 APSPTPVPSQKTSGGTRVYASPLAKRLAAEKGLDLSSIGAGSGLFGSITSADLSKASKAG 263
            P+P    S     G R+YASPLAKRLAAEKGL L  +  G+GL+GSIT  DL  A  A 
Sbjct: 189 PPAPAAAKSMAAPSGERIYASPLAKRLAAEKGLSLQGL-KGTGLYGSITVKDLEGAPAAA 247

Query: 264 AVAAPSKSAK--PTANGPFTDLPVSGVRGVIAKRLLQSKQVI---------------KLR 306
           A    + +A   P       D+PVS +RGVIAKRLL+SKQ I               ++R
Sbjct: 248 AQPGVAAAAPLPPIGVPAGIDIPVSTIRGVIAKRLLESKQTIPHYYLSIDVNMDAALEMR 307

Query: 307 EQMNKALEKRGAKLSINDFIIKATALASRRVPEANSSWQDTFIREYHSVDVSVAVNTDKG 366
           E+ NK LEK+  KLS+ND IIK  A+A +++PE NS+W   FIR+Y+SVDVSVAV+TD G
Sbjct: 308 EKFNKMLEKQKVKLSVNDIIIKGMAMACKKIPEGNSAWMGDFIRQYNSVDVSVAVSTDNG 367

Query: 367 LFTPIVFDADKKGLVDISNDSRSLISFRRPVKFSEESNDVKTLAAKAKEGKLQPHEFQ 424
           L TPIVF AD KG+V I                   S DVK LA KA+EGKLQP EFQ
Sbjct: 368 LITPIVFGADTKGIVQI-------------------SKDVKELANKAREGKLQPQEFQ 406

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	426
FB|FBgn0031912	512	CG5261 [Drosophila melanogaste	0.422	0.351	0.525	5.9e-76
WB|WBGene00009082	507	dlat-1 [Caenorhabditis elegans	0.225	0.189	0.752	1.3e-74
UNIPROTKB|H0YDD4	479	DLAT "Dihydrolipoyllysine-resi	0.330	0.294	0.496	4.3e-61
UNIPROTKB|F1N690	647	DLAT "Dihydrolipoyllysine-resi	0.319	0.210	0.513	8.5e-60
UNIPROTKB|F1SMB2	647	DLAT "Dihydrolipoyllysine-resi	0.319	0.210	0.519	1.7e-59
RGD|619859	632	Dlat "dihydrolipoamide S-acety	0.330	0.223	0.518	2.3e-59
MGI|MGI:2385311	642	Dlat "dihydrolipoamide S-acety	0.330	0.219	0.515	4.3e-59
UNIPROTKB|E2RQS9	647	DLAT "Uncharacterized protein"	0.330	0.217	0.509	6.1e-59
UNIPROTKB|E1C6N5	632	DLAT "Uncharacterized protein"	0.190	0.128	0.753	6.1e-59
UNIPROTKB|P10515	647	DLAT "Dihydrolipoyllysine-resi	0.330	0.217	0.496	2.9e-58

FB|FBgn0031912 CG5261 [Drosophila melanogaster (taxid:7227)]

 Score = 450 (163.5 bits), Expect = 5.9e-76, Sum P(2) = 5.9e-76
 Identities = 105/200 (52%), Positives = 139/200 (69%)

Query:   216 SGGTRVYASPLAKRLAAEKGLDLSSIGAGSGLFGSITSADLS--KASKAGAVAAPSKSAK 273
             +G  RVYASP+AKRLA  + L L   G GSG+ GSI S DL+  KA+   A AAP+K+ +
Sbjct:   220 AGTGRVYASPMAKRLAEAQQLRLQ--GKGSGVHGSIKSGDLAGQKAAAKPAAAAPAKAPR 277

Query:   274 PTANGPFTDLPVSGVRGVIAKRLLQSK------------QV---IKLREQMNKALEKRGA 318
               A   + D+PV+ +R VIAKRLL+SK            QV   +K R ++NK  EK+GA
Sbjct:   278 -AAGARYEDIPVTNMRAVIAKRLLESKTQLPHYYVTVQCQVDKLLKFRAKVNKKYEKQGA 336

Query:   319 KLSINDFIIKATALASRRVPEANSSWQDTFIREYHSVDVSVAVNTDKGLFTPIVFDADKK 378
             ++S+NDFIIKA A+AS +VPEANS+W DT IR+Y  VDVSVAV+TDKGL TPIVF+AD+K
Sbjct:   337 RVSVNDFIIKAVAIASLKVPEANSAWMDTVIRKYDDVDVSVAVSTDKGLITPIVFNADRK 396

Query:   379 GLVDISNDSRSLISFRRPVK 398
             G+++IS D ++L +  R  K
Sbjct:   397 GVLEISKDVKALAAKARDNK 416

GO:0004742 "dihydrolipoyllysine-residue acetyltransferase activity" evidence=ISS

GO:0005967 "mitochondrial pyruvate dehydrogenase complex" evidence=ISS

GO:0006086 "acetyl-CoA biosynthetic process from pyruvate" evidence=ISS

GO:0005811 "lipid particle" evidence=IDA

WB|WBGene00009082 dlat-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 373 (136.4 bits), Expect = 1.3e-74, Sum P(3) = 1.3e-74
 Identities = 76/101 (75%), Positives = 86/101 (85%)

Query:    69 AVGSLSQ-RLVREGN----DRVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDK 123
             A  S+ Q RL   GN    +RVALPALSPTME+GT+VSW KKEGD+L+EGDLL EIETDK
Sbjct:    59 AAFSIKQVRLYSSGNLPKHNRVALPALSPTMELGTVVSWQKKEGDQLSEGDLLCEIETDK 118

Query:   124 ATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENESDV 164
             ATMGFETPEEGYLAKIL+  GSKDVPIGKL+CIIV+NE+DV
Sbjct:   119 ATMGFETPEEGYLAKILIQEGSKDVPIGKLLCIIVDNEADV 159

GO:0008152 "metabolic process" evidence=IEA

GO:0016746 "transferase activity, transferring acyl groups" evidence=IEA

GO:0004742 "dihydrolipoyllysine-residue acetyltransferase activity" evidence=IEA

GO:0006090 "pyruvate metabolic process" evidence=IEA

GO:0045254 "pyruvate dehydrogenase complex" evidence=IEA

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

UNIPROTKB|H0YDD4 DLAT "Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 325 (119.5 bits), Expect = 4.3e-61, Sum P(2) = 4.3e-61
 Identities = 79/159 (49%), Positives = 101/159 (63%)

Query:   257 SKASKAGAVAAP--SKSAKPTANGPFTDLPVSGVRGVIAKRLLQSKQ------------- 301
             SK + A A   P       P   G FTD+P+S +R VIA+RL+QSKQ             
Sbjct:   227 SKVAPAPAAVVPPTGPGMAPVPTGVFTDIPISNIRRVIAQRLMQSKQTIPHYYLSIDVNM 286

Query:   302 --VIKLREQMNKALEKRGAKLSINDFIIKATALASRRVPEANSSWQDTFIREYHSVDVSV 359
               V+ +R+++NK LE R +K+S+NDFIIKA+ALA  +VPEANSSW DT IR+ H VDVSV
Sbjct:   287 GEVLLVRKELNKILEGR-SKISVNDFIIKASALACLKVPEANSSWMDTVIRQNHVVDVSV 345

Query:   360 AVNTDKGLFTPIVFDADKKGLVDISNDSRSLISFRRPVK 398
             AV+T  GL TPIVF+A  KG+  I+ND  SL +  R  K
Sbjct:   346 AVSTPAGLITPIVFNAHIKGVETIANDVVSLATKAREGK 384

GO:0004742 "dihydrolipoyllysine-residue acetyltransferase activity" evidence=IEA

GO:0006090 "pyruvate metabolic process" evidence=IEA

GO:0045254 "pyruvate dehydrogenase complex" evidence=IEA

UNIPROTKB|F1N690 DLAT "Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex" [Bos taurus (taxid:9913)]

 Score = 335 (123.0 bits), Expect = 8.5e-60, Sum P(2) = 8.5e-60
 Identities = 78/152 (51%), Positives = 100/152 (65%)

Query:   262 AGAVAAPSKSAKPTANGPFTDLPVSGVRGVIAKRLLQSKQ---------------VIKLR 306
             A AV  PS    P   G FTD+P+S +R VIA+RL+QSKQ               V+ +R
Sbjct:   402 AAAVPPPSPGVAPVPTGVFTDIPISNIRRVIAQRLMQSKQTIPHYYLSIDVNMGEVLLVR 461

Query:   307 EQMNKALEKRGAKLSINDFIIKATALASRRVPEANSSWQDTFIREYHSVDVSVAVNTDKG 366
             +++NK LE + +K+S+NDFIIKA+ALA  +VPEANSSW DT IR+ H VD+SVAV+T  G
Sbjct:   462 KELNKMLEGK-SKISVNDFIIKASALACLKVPEANSSWMDTVIRQNHVVDISVAVSTPAG 520

Query:   367 LFTPIVFDADKKGLVDISNDSRSLISFRRPVK 398
             L TPIVF+A  KGL  I+ND  SL +  R  K
Sbjct:   521 LITPIVFNAHIKGLETIANDVVSLATKAREGK 552

GO:0045254 "pyruvate dehydrogenase complex" evidence=IEA

GO:0006090 "pyruvate metabolic process" evidence=IEA

GO:0004742 "dihydrolipoyllysine-residue acetyltransferase activity" evidence=IEA

UNIPROTKB|F1SMB2 DLAT "Dihydrolipoyllysine-residue acetyltransferase" [Sus scrofa (taxid:9823)]

 Score = 336 (123.3 bits), Expect = 1.7e-59, Sum P(2) = 1.7e-59
 Identities = 79/152 (51%), Positives = 100/152 (65%)

Query:   262 AGAVAAPSKSAKPTANGPFTDLPVSGVRGVIAKRLLQSKQ---------------VIKLR 306
             A AV  PS    P   G FTD+P+S +R VIA+RL+QSKQ               V+ +R
Sbjct:   402 AAAVPPPSPGVAPVPTGVFTDIPISNIRRVIAQRLMQSKQTIPHYYLSVDVNMGEVLLVR 461

Query:   307 EQMNKALEKRGAKLSINDFIIKATALASRRVPEANSSWQDTFIREYHSVDVSVAVNTDKG 366
             +++NK LE R +K+S+NDFIIKA+ALA  +VPEANSSW DT IR+ H VD+SVAV+T  G
Sbjct:   462 KELNKMLEGR-SKISVNDFIIKASALACLKVPEANSSWLDTVIRQNHVVDISVAVSTPAG 520

Query:   367 LFTPIVFDADKKGLVDISNDSRSLISFRRPVK 398
             L TPIVF+A  KGL  I+ND  SL +  R  K
Sbjct:   521 LITPIVFNAHIKGLETIANDVVSLATKAREGK 552

GO:0005739 "mitochondrion" evidence=IEA

GO:0045254 "pyruvate dehydrogenase complex" evidence=IEA

GO:0006090 "pyruvate metabolic process" evidence=IEA

GO:0004742 "dihydrolipoyllysine-residue acetyltransferase activity" evidence=IEA

RGD|619859 Dlat "dihydrolipoamide S-acetyltransferase" [Rattus norvegicus (taxid:10116)]

 Score = 338 (124.0 bits), Expect = 2.3e-59, Sum P(2) = 2.3e-59
 Identities = 82/158 (51%), Positives = 104/158 (65%)

Query:   257 SKASKAGAVAAP-SKSAKPTANGPFTDLPVSGVRGVIAKRLLQSKQ-------------- 301
             +KA+ A A AAP      PT  G F D+P+S +R VIA+RL+QSKQ              
Sbjct:   381 TKAAPAAAAAAPPGPRVAPTPAGVFIDIPISNIRRVIAQRLMQSKQTIPHYYLSVDVNMG 440

Query:   302 -VIKLREQMNKALEKRGAKLSINDFIIKATALASRRVPEANSSWQDTFIREYHSVDVSVA 360
              V+ +R+++NK LE +G K+S+NDFIIKA+ALA  +VPEANSSW DT IR+ H VDVSVA
Sbjct:   441 EVLLVRKELNKMLEGKG-KISVNDFIIKASALACLKVPEANSSWMDTVIRQNHVVDVSVA 499

Query:   361 VNTDKGLFTPIVFDADKKGLVDISNDSRSLISFRRPVK 398
             V+T  GL TPIVF+A  KGL  I++D  SL S  R  K
Sbjct:   500 VSTPAGLITPIVFNAHIKGLETIASDVVSLASKAREGK 537

GO:0000166 "nucleotide binding" evidence=TAS

GO:0004742 "dihydrolipoyllysine-residue acetyltransferase activity" evidence=IDA;TAS

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0006006 "glucose metabolic process" evidence=IEA

GO:0006086 "acetyl-CoA biosynthetic process from pyruvate" evidence=IDA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0030431 "sleep" evidence=IEP

GO:0045254 "pyruvate dehydrogenase complex" evidence=IDA;TAS

MGI|MGI:2385311 Dlat "dihydrolipoamide S-acetyltransferase (E2 component of pyruvate dehydrogenase complex)" [Mus musculus (taxid:10090)]

 Score = 336 (123.3 bits), Expect = 4.3e-59, Sum P(2) = 4.3e-59
 Identities = 82/159 (51%), Positives = 104/159 (65%)

Query:   257 SKASKAGA--VAAPSKSAKPTANGPFTDLPVSGVRGVIAKRLLQSKQ------------- 301
             SKA+ A A  +A P     P   G FTD+P+S +R VIA+RL+QSKQ             
Sbjct:   390 SKAAPAAAAAMAPPGPRVAPAPAGVFTDIPISNIRRVIAQRLMQSKQTIPHYYLSVDVNM 449

Query:   302 --VIKLREQMNKALEKRGAKLSINDFIIKATALASRRVPEANSSWQDTFIREYHSVDVSV 359
               V+ +R+++NK LE +G K+S+NDFIIKA+ALA  +VPEANSSW DT IR+ H VDVSV
Sbjct:   450 GEVLLVRKELNKMLEGKG-KISVNDFIIKASALACLKVPEANSSWMDTVIRQNHVVDVSV 508

Query:   360 AVNTDKGLFTPIVFDADKKGLVDISNDSRSLISFRRPVK 398
             AV+T  GL TPIVF+A  KGL  I++D  SL S  R  K
Sbjct:   509 AVSTPAGLITPIVFNAHIKGLETIASDVVSLASKAREGK 547

GO:0004742 "dihydrolipoyllysine-residue acetyltransferase activity" evidence=ISO;TAS

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005967 "mitochondrial pyruvate dehydrogenase complex" evidence=TAS

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006006 "glucose metabolic process" evidence=IEA

GO:0006086 "acetyl-CoA biosynthetic process from pyruvate" evidence=ISO;IC

GO:0006090 "pyruvate metabolic process" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0008152 "metabolic process" evidence=TAS

GO:0016740 "transferase activity" evidence=IEA

GO:0016746 "transferase activity, transferring acyl groups" evidence=IEA

GO:0045254 "pyruvate dehydrogenase complex" evidence=ISO;TAS

UNIPROTKB|E2RQS9 DLAT "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 332 (121.9 bits), Expect = 6.1e-59, Sum P(2) = 6.1e-59
 Identities = 81/159 (50%), Positives = 105/159 (66%)

Query:   257 SKASKAGAVAAPSK--SAKPTANGPFTDLPVSGVRGVIAKRLLQSKQ------------- 301
             +KA+ A A A P+      P  +G FTD+P+S +R VIA+RL+QSKQ             
Sbjct:   395 TKAAPAPAAAVPAAVPGVAPVPSGVFTDVPISNIRRVIAQRLMQSKQTIPHYYLSIDVNM 454

Query:   302 --VIKLREQMNKALEKRGAKLSINDFIIKATALASRRVPEANSSWQDTFIREYHSVDVSV 359
               V+ +R+++NK LE R +K+S+NDFIIKA+ALA  +VPEANSSW DT IR+ H VDVSV
Sbjct:   455 GEVLLVRKELNKMLEGR-SKISVNDFIIKASALACLKVPEANSSWLDTVIRQNHVVDVSV 513

Query:   360 AVNTDKGLFTPIVFDADKKGLVDISNDSRSLISFRRPVK 398
             AV+T  GL TPIVF+A  KGL  I+ND  SL +  R  K
Sbjct:   514 AVSTPAGLITPIVFNAHIKGLEAIANDVVSLATKAREGK 552

GO:0005739 "mitochondrion" evidence=IEA

GO:0045254 "pyruvate dehydrogenase complex" evidence=IEA

GO:0006090 "pyruvate metabolic process" evidence=IEA

GO:0004742 "dihydrolipoyllysine-residue acetyltransferase activity" evidence=IEA

UNIPROTKB|E1C6N5 DLAT "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 321 (118.1 bits), Expect = 6.1e-59, Sum P(2) = 6.1e-59
 Identities = 61/81 (75%), Positives = 70/81 (86%)

Query:    84 RVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPA 143
             +VALPALSPTM MGT+  W KK G+KLNEGDLLAEIETDKAT+GFE  EEGYLAKILVP 
Sbjct:   200 QVALPALSPTMTMGTVQRWEKKVGEKLNEGDLLAEIETDKATIGFEVQEEGYLAKILVPE 259

Query:   144 GSKDVPIGKLVCIIVENESDV 164
             G++DVP+G  +CIIVE ESD+
Sbjct:   260 GTRDVPLGTTLCIIVEKESDI 280

GO:0004742 "dihydrolipoyllysine-residue acetyltransferase activity" evidence=IEA

GO:0006090 "pyruvate metabolic process" evidence=IEA

GO:0045254 "pyruvate dehydrogenase complex" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|P10515 DLAT "Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 325 (119.5 bits), Expect = 2.9e-58, Sum P(2) = 2.9e-58
 Identities = 79/159 (49%), Positives = 101/159 (63%)

Query:   257 SKASKAGAVAAP--SKSAKPTANGPFTDLPVSGVRGVIAKRLLQSKQ------------- 301
             SK + A A   P       P   G FTD+P+S +R VIA+RL+QSKQ             
Sbjct:   395 SKVAPAPAAVVPPTGPGMAPVPTGVFTDIPISNIRRVIAQRLMQSKQTIPHYYLSIDVNM 454

Query:   302 --VIKLREQMNKALEKRGAKLSINDFIIKATALASRRVPEANSSWQDTFIREYHSVDVSV 359
               V+ +R+++NK LE R +K+S+NDFIIKA+ALA  +VPEANSSW DT IR+ H VDVSV
Sbjct:   455 GEVLLVRKELNKILEGR-SKISVNDFIIKASALACLKVPEANSSWMDTVIRQNHVVDVSV 513

Query:   360 AVNTDKGLFTPIVFDADKKGLVDISNDSRSLISFRRPVK 398
             AV+T  GL TPIVF+A  KG+  I+ND  SL +  R  K
Sbjct:   514 AVSTPAGLITPIVFNAHIKGVETIANDVVSLATKAREGK 552

GO:0006006 "glucose metabolic process" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0005967 "mitochondrial pyruvate dehydrogenase complex" evidence=NAS

GO:0004742 "dihydrolipoyllysine-residue acetyltransferase activity" evidence=NAS

GO:0006085 "acetyl-CoA biosynthetic process" evidence=NAS

GO:0005515 "protein binding" evidence=IPI

GO:0005759 "mitochondrial matrix" evidence=TAS

GO:0006090 "pyruvate metabolic process" evidence=TAS

GO:0010510 "regulation of acetyl-CoA biosynthetic process from pyruvate" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q19749	ODP2_CAEEL	2, ., 3, ., 1, ., 1, 2	0.5421	0.7558	0.6351	yes	N/A
Q68WK6	ODP2_RICTY	2, ., 3, ., 1, ., 1, 2	0.3613	0.7018	0.7400	yes	N/A
Q4ULG1	ODP2_RICFE	2, ., 3, ., 1, ., 1, 2	0.3583	0.7136	0.7378	yes	N/A
P12695	ODP2_YEAST	2, ., 3, ., 1, ., 1, 2	0.3793	0.7488	0.6618	yes	N/A
O66119	ODP2_ZYMMO	2, ., 3, ., 1, ., 1, 2	0.3456	0.7323	0.7090	yes	N/A
Q9R9N3	ODP2_RHIME	2, ., 3, ., 1, ., 1, 2	0.3842	0.7441	0.7091	yes	N/A
Q9ZD20	ODP2_RICPR	2, ., 3, ., 1, ., 1, 2	0.3613	0.7112	0.7426	yes	N/A
P08461	ODP2_RAT	2, ., 3, ., 1, ., 1, 2	0.5013	0.7347	0.4952	yes	N/A
Q1RJT3	ODP2_RICBR	2, ., 3, ., 1, ., 1, 2	0.3715	0.7253	0.7392	yes	N/A
O59816	ODP2_SCHPO	2, ., 3, ., 1, ., 1, 2	0.3934	0.7347	0.6480	yes	N/A
Q92HK7	ODP2_RICCN	2, ., 3, ., 1, ., 1, 2	0.3646	0.7089	0.7330	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.3.1	0.766
3rd Layer	2.3.1.12	0.824

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	426
TIGR01349	436	TIGR01349, PDHac_trf_mito, pyruvate dehydrogenase	1e-119
PLN02744	539	PLN02744, PLN02744, dihydrolipoyllysine-residue ac	2e-99
PRK11856	411	PRK11856, PRK11856, branched-chain alpha-keto acid	2e-91
COG0508	404	COG0508, AceF, Pyruvate/2-oxoglutarate dehydrogena	5e-75
PRK11855	547	PRK11855, PRK11855, dihydrolipoamide acetyltransfe	5e-52
PRK05704	407	PRK05704, PRK05704, dihydrolipoamide succinyltrans	2e-50
TIGR01347	403	TIGR01347, sucB, 2-oxoglutarate dehydrogenase comp	9e-43
PRK11892	464	PRK11892, PRK11892, pyruvate dehydrogenase subunit	2e-36
PRK11854	633	PRK11854, aceF, pyruvate dehydrogenase dihydrolipo	8e-33
TIGR01348	546	TIGR01348, PDHac_trf_long, pyruvate dehydrogenase	1e-32
pfam00198	212	pfam00198, 2-oxoacid_dh, 2-oxoacid dehydrogenases	6e-32
PTZ00144	418	PTZ00144, PTZ00144, dihydrolipoamide succinyltrans	9e-32
TIGR02927	579	TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogena	3e-31
cd06849	74	cd06849, lipoyl_domain, Lipoyl domain of the dihyd	7e-27
cd06663	73	cd06663, Biotinyl_lipoyl_domains, Biotinyl_lipoyl_	4e-17
PRK14875	371	PRK14875, PRK14875, acetoin dehydrogenase E2 subun	7e-16
PLN02226	463	PLN02226, PLN02226, 2-oxoglutarate dehydrogenase E	1e-15
pfam00198	212	pfam00198, 2-oxoacid_dh, 2-oxoacid dehydrogenases	3e-14
PRK11855	547	PRK11855, PRK11855, dihydrolipoamide acetyltransfe	4e-14
PRK11856	411	PRK11856, PRK11856, branched-chain alpha-keto acid	2e-13
TIGR01349	436	TIGR01349, PDHac_trf_mito, pyruvate dehydrogenase	4e-13
pfam00364	73	pfam00364, Biotin_lipoyl, Biotin-requiring enzyme	8e-13
PRK14843	347	PRK14843, PRK14843, dihydrolipoamide acetyltransfe	3e-12
PLN02528	416	PLN02528, PLN02528, 2-oxoisovalerate dehydrogenase	3e-12
TIGR02927	579	TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogena	3e-11
PRK11857	306	PRK11857, PRK11857, dihydrolipoamide acetyltransfe	2e-10
PLN02744	539	PLN02744, PLN02744, dihydrolipoyllysine-residue ac	3e-10
COG0508	404	COG0508, AceF, Pyruvate/2-oxoglutarate dehydrogena	7e-10
PRK11854	633	PRK11854, aceF, pyruvate dehydrogenase dihydrolipo	2e-09
pfam02817	39	pfam02817, E3_binding, e3 binding domain	8e-09
PRK11854	633	PRK11854, aceF, pyruvate dehydrogenase dihydrolipo	4e-07
TIGR01348	546	TIGR01348, PDHac_trf_long, pyruvate dehydrogenase	2e-06
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	3e-06
PRK11855	547	PRK11855, PRK11855, dihydrolipoamide acetyltransfe	1e-05
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	1e-05
PRK14843	347	PRK14843, PRK14843, dihydrolipoamide acetyltransfe	2e-05
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	3e-05
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	3e-05
PTZ00144	418	PTZ00144, PTZ00144, dihydrolipoamide succinyltrans	9e-05
cd06850	67	cd06850, biotinyl_domain, The biotinyl-domain or b	9e-05
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	1e-04
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	1e-04
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	2e-04
pfam07174	297	pfam07174, FAP, Fibronectin-attachment protein (FA	2e-04
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	2e-04
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	3e-04
pfam10152	147	pfam10152, DUF2360, Predicted coiled-coil domain-c	3e-04
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	3e-04
PLN02528	416	PLN02528, PLN02528, 2-oxoisovalerate dehydrogenase	4e-04
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	4e-04
PRK05704	407	PRK05704, PRK05704, dihydrolipoamide succinyltrans	5e-04
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	5e-04
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	6e-04
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	6e-04
PTZ00436	357	PTZ00436, PTZ00436, 60S ribosomal protein L19-like	6e-04
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	6e-04
PRK08225	70	PRK08225, PRK08225, acetyl-CoA carboxylase biotin	8e-04
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	9e-04
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	0.001
pfam07174	297	pfam07174, FAP, Fibronectin-attachment protein (FA	0.001
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	0.001
PRK10547	670	PRK10547, PRK10547, chemotaxis protein CheA; Provi	0.001
PTZ00436	357	PTZ00436, PTZ00436, 60S ribosomal protein L19-like	0.002
pfam04625	407	pfam04625, DEC-1_N, DEC-1 protein, N-terminal regi	0.002
PRK06549	130	PRK06549, PRK06549, acetyl-CoA carboxylase biotin	0.002
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	0.002
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	0.002
PLN02983	274	PLN02983, PLN02983, biotin carboxyl carrier protei	0.002
PLN02983	274	PLN02983, PLN02983, biotin carboxyl carrier protei	0.003
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	0.003
PHA03264	416	PHA03264, PHA03264, envelope glycoprotein D; Provi	0.003
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	0.003
PHA01732	94	PHA01732, PHA01732, proline-rich protein	0.003
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	0.003
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	0.004
PRK01297	475	PRK01297, PRK01297, ATP-dependent RNA helicase Rhl	0.004

>gnl|CDD|233367 TIGR01349, PDHac_trf_mito, pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

 Score =  353 bits (907), Expect = e-119
 Identities = 175/368 (47%), Positives = 222/368 (60%), Gaps = 50/368 (13%)

Query: 85  VALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAG 144
           + +PALSPTM  G +  W KKEGDK+N GD++AEIETDKATM FE  EEGYLAKILVP G
Sbjct: 2   ITMPALSPTMTTGNLAKWLKKEGDKVNPGDVIAEIETDKATMEFEAVEEGYLAKILVPEG 61

Query: 145 SKDVPIGKLVCIIVENESDVA-AFKDFK--DDAPPAAGASAPAPPPPKVAAAPPPPPPKA 201
           +KDVP+ K + ++VE + DVA AFK++K    A PA   S  AP  P  A  P P P K 
Sbjct: 62  TKDVPVNKPIAVLVEEKEDVADAFKNYKLESSASPAPKPSEIAPTAPPSAPKPSPAPQKQ 121

Query: 202 APAPSPTPVPSQKTSGGTRVYASPLAKRLAAEKGLDLSSIGAGSGLFGSITSADL----- 256
           +P PS  P P      G R++ASPLAK+LA EKG+DLS++ AGSG  G I   D+     
Sbjct: 122 SPEPSS-PAPLSDKESGDRIFASPLAKKLAKEKGIDLSAV-AGSGPNGRIVKKDIESFVP 179

Query: 257 -----SKASKAGAVAAPSKSAKPTANGPFTDLPVSGVRGVIAKRLLQSKQ---------- 301
                +    A    A   +A P + G + D+P+S +R +IAKRLL+SKQ          
Sbjct: 180 QSPASANQQAAATTPATYPAAAPVSTGSYEDVPLSNIRKIIAKRLLESKQTIPHYYVSIE 239

Query: 302 -----VIKLREQMNKALEKRGAKLSINDFIIKATALASRRVPEANSSWQDTFIREYHSVD 356
                ++ LR+++N    +   KLS+NDFIIKA+ALA R VPEANSSW D FIR Y +VD
Sbjct: 240 CNVDKLLALRKELNAMASEV-YKLSVNDFIIKASALALREVPEANSSWTDNFIRRYKNVD 298

Query: 357 VSVAVNTDKGLFTPIVFDADKKGLVDISNDSRSLISFRRPVKFSEESNDVKTLAAKAKEG 416
           +SVAV T  GL TPIV +AD KGL  I                   SN++K LA +A+  
Sbjct: 299 ISVAVATPDGLITPIVRNADAKGLSTI-------------------SNEIKDLAKRARNN 339

Query: 417 KLQPHEFQ 424
           KL+P EFQ
Sbjct: 340 KLKPEEFQ 347

This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score [Energy metabolism, Pyruvate dehydrogenase]. Length = 436

>gnl|CDD|215397 PLN02744, PLN02744, dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex

 Score =  306 bits (785), Expect = 2e-99
 Identities = 150/360 (41%), Positives = 208/360 (57%), Gaps = 44/360 (12%)

Query: 85  VALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAG 144
           + +P+LSPTM  G I  W KKEGDK++ G++L E+ETDKAT+  E  EEGYLAKI+   G
Sbjct: 115 IGMPSLSPTMTEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDG 174

Query: 145 SKDVPIGKLVCIIVENESDVAAFKDFKDDAP--PAAGASAPAPPPPKVAAAPPPPPPKAA 202
           +K++ +G+++ I VE E D+  FKD+K  +   PAA  + P+PPPPK      P      
Sbjct: 175 AKEIKVGEVIAITVEEEEDIGKFKDYKPSSSAAPAAPKAKPSPPPPKEEEVEKPASSPEP 234

Query: 203 PAPSPTPVPSQKTSGGTRVYASPLAKRLAAEKGLDLSSIGAGSGLFGSITSADLSK--AS 260
            A  P+  P    S G R++ASPLA++LA +  + LSSI  G+G  G I  AD+    AS
Sbjct: 235 KASKPSAPP----SSGDRIFASPLARKLAEDNNVPLSSI-KGTGPDGRIVKADIEDYLAS 289

Query: 261 KAGAVAAPSKSAKPTANGPFTDLPVSGVRGVIAKRLLQSKQVI---------------KL 305
                 AP  +        +TD+P + +R V A RLLQSKQ I                L
Sbjct: 290 GGKGATAPPSTDSKAPALDYTDIPNTQIRKVTASRLLQSKQTIPHYYLTVDTRVDKLMAL 349

Query: 306 REQMNKALEKRGAK-LSINDFIIKATALASRRVPEANSSWQDTFIREYHSVDVSVAVNTD 364
           R Q+N   E  G K +S+ND +IKA ALA R+VP+ NSSW D +IR+YH+V+++VAV T+
Sbjct: 350 RSQLNSLQEASGGKKISVNDLVIKAAALALRKVPQCNSSWTDDYIRQYHNVNINVAVQTE 409

Query: 365 KGLFTPIVFDADKKGLVDISNDSRSLISFRRPVKFSEESNDVKTLAAKAKEGKLQPHEFQ 424
            GL+ P+V DADKKGL  I                   + +VK LA KA+E  L+P +++
Sbjct: 410 NGLYVPVVKDADKKGLSTI-------------------AEEVKQLAQKARENSLKPEDYE 450

Length = 539

>gnl|CDD|237001 PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed

 Score =  282 bits (723), Expect = 2e-91
 Identities = 132/358 (36%), Positives = 181/358 (50%), Gaps = 60/358 (16%)

Query: 87  LPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSK 146
           +P L   M  G IV W  K GD + EG  LAE+ETDKAT+   +P  G +AK+LV  G  
Sbjct: 7   MPDLGEGMTEGEIVEWLVKVGDTVKEGQPLAEVETDKATVEIPSPVAGTVAKLLVEEGDV 66

Query: 147 DVPIGKLVCIIVENESDVAAFKDFKDDAPPAAGASAPAPPPPKVAAAPPPPPPKAAPAPS 206
            VP+G ++ +I E     AA       A   A   APAP P   AAA     P AA AP+
Sbjct: 67  -VPVGSVIAVIEEEGEAEAA-------AAAEAAPEAPAPEPAPAAAAAAAAAPAAAAAPA 118

Query: 207 PTPVPSQKTSGGTRVYASPLAKRLAAEKGLDLSSIGAGSGLFGSITSADLSKASKAGAVA 266
                + K        ASP  ++LA E G+DLS++  GSG  G IT  D+  A+ A A A
Sbjct: 119 APAAAAAK--------ASPAVRKLARELGVDLSTV-KGSGPGGRITKEDVEAAAAAAAPA 169

Query: 267 APSKSAKP-----TANGPFTDLPVSGVRGVIAKRLLQSKQVI---------------KLR 306
           A + +A        A      +P+SG+R  IAKR+++SK+ I                LR
Sbjct: 170 AAAAAAAAAAPPAAAAEGEERVPLSGMRKAIAKRMVESKREIPHFTLTDEVDVTALLALR 229

Query: 307 EQMNKALEKRGAKLSINDFIIKATALASRRVPEANSSWQDTFIREYHSVDVSVAVNTDKG 366
           +Q+     K    L++ DF+IKA ALA ++ PE N+SW D  I     V++ +AV TD G
Sbjct: 230 KQLKAIGVK----LTVTDFLIKAVALALKKFPELNASWDDDAIVLKKYVNIGIAVATDGG 285

Query: 367 LFTPIVFDADKKGLVDISNDSRSLISFRRPVKFSEESNDVKTLAAKAKEGKLQPHEFQ 424
           L  P++ DADKK L ++                   + ++K LA KA+EGKL+P E Q
Sbjct: 286 LIVPVIRDADKKSLFEL-------------------AREIKDLAEKAREGKLKPEELQ 324

Length = 411

>gnl|CDD|223582 COG0508, AceF, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]

 Score =  239 bits (612), Expect = 5e-75
 Identities = 132/361 (36%), Positives = 187/361 (51%), Gaps = 69/361 (19%)

Query: 85  VALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAG 144
           + +P L  TM  GTIV W KK GDK+ EGD+L E+ETDKATM    P+ G LAKILV  G
Sbjct: 5   IKMPDLGETMTEGTIVEWLKKVGDKVKEGDVLVEVETDKATMEVPAPDAGVLAKILVEEG 64

Query: 145 SKDVPIGKLVCIIVENESDVAAFKDFKDDAPPAAGASAPAPPPPKVAAAPPPPPPKAAPA 204
              VP+G ++  I E                   GA APA      AA  PP P  AAPA
Sbjct: 65  DT-VPVGAVIARIEE------------------EGADAPA------AAEAPPEPAAAAPA 99

Query: 205 PSPTPVPSQKTSGGTRVYASPLAKRLAAEKGLDLSSIGAGSGLFGSITSADL----SKAS 260
            +P    S       RV ASP  +RLA E G+DLS +  G+G  G IT  D+    ++ +
Sbjct: 100 SAPATAASAAAG---RVLASPAVRRLAREAGIDLSKV-KGTGPGGRITKKDVEAAVAEKA 155

Query: 261 KAGAVAAPSKSAKPTANGPFTDLPVSGVRGVIAKRLLQSKQ---------------VIKL 305
            A A  AP+ +A  +A G    +P+S +R  IA+R+++SKQ               ++ L
Sbjct: 156 AAAAAPAPAAAAPASAAGEEERVPMSRIRKAIAERMVESKQTIPHLTLFNEVDMTKLMAL 215

Query: 306 REQMNKALEKRGAKLSINDFIIKATALASRRVPEANSSW--QDTFIREYHSVDVSVAVNT 363
           R+++ +  EK+G KL+   F++KA   A ++ PE N+S       I  +  V++ +AV+T
Sbjct: 216 RKKLKEEFEKKGVKLTFLSFLVKAVVKALKKFPEVNASIDGDGEEIVYHKYVNIGIAVDT 275

Query: 364 DKGLFTPIVFDADKKGLVDISNDSRSLISFRRPVKFSEESNDVKTLAAKAKEGKLQPHEF 423
            +GL  P++ DADKK L +I                   + ++K LA KA++GKL P E 
Sbjct: 276 PRGLVVPVIRDADKKSLAEI-------------------AKEIKDLAKKARDGKLTPEEM 316

Query: 424 Q 424
           Q
Sbjct: 317 Q 317

Length = 404

>gnl|CDD|237000 PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed

 Score =  182 bits (465), Expect = 5e-52
 Identities = 109/363 (30%), Positives = 158/363 (43%), Gaps = 69/363 (19%)

Query: 97  GTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCI 156
             ++ W  K GD + E   L  +ETDKATM   +P  G + +I V  G K V +G L+ +
Sbjct: 133 VEVIEWLVKVGDTVEEDQSLITVETDKATMEIPSPVAGVVKEIKVKVGDK-VSVGSLLVV 191

Query: 157 IVENESDVAAFKDFKDDAPPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTS 216
           I             +  A   A A+APA   P  AAA  P P  AA A      P+   +
Sbjct: 192 I-------------EVAAAAPAAAAAPAAAAPAAAAAAAPAPAPAAAAAPAAAAPAAAAA 238

Query: 217 GGTRVYASPLAKRLAAEKGLDLSSIGAGSGLFGSITSADLSKASKAG-AVAAPSKSAKPT 275
            G   +ASP  +RLA E G+DLS +  G+G  G IT  D+    K   + AA + +A   
Sbjct: 239 PGKAPHASPAVRRLARELGVDLSQV-KGTGKKGRITKEDVQAFVKGAMSAAAAAAAAAAA 297

Query: 276 ANGPFTDL-----------------PVSGVRGVIAKRLLQSKQVI--------------- 303
           A G    L                 P+S ++ + A  L +S   I               
Sbjct: 298 AGGGGLGLLPWPKVDFSKFGEIETKPLSRIKKISAANLHRSWVTIPHVTQFDEADITDLE 357

Query: 304 KLREQMNKALEKRGAKLSINDFIIKATALASRRVPEANSSWQD--TFIREYHSVDVSVAV 361
            LR+Q+ K  EK G KL++  F IKA   A +  P  N+S  +    +      ++  AV
Sbjct: 358 ALRKQLKKEAEKAGVKLTMLPFFIKAVVAALKEFPVFNASLDEDGDELTYKKYFNIGFAV 417

Query: 362 NTDKGLFTPIVFDADKKGLVDISNDSRSLISFRRPVKFSEESNDVKTLAAKAKEGKLQPH 421
           +T  GL  P++ D DKK L++I                + E  +   LA KA++GKL+P 
Sbjct: 418 DTPNGLVVPVIKDVDKKSLLEI----------------AREIAE---LAKKARDGKLKPD 458

Query: 422 EFQ 424
           + Q
Sbjct: 459 DMQ 461

Length = 547

>gnl|CDD|235571 PRK05704, PRK05704, dihydrolipoamide succinyltransferase; Validated

 Score =  175 bits (446), Expect = 2e-50
 Identities = 108/360 (30%), Positives = 157/360 (43%), Gaps = 71/360 (19%)

Query: 88  PALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKD 147
           P L  ++   TI +W KK GD +   ++L EIETDK  +    P  G L++IL   G   
Sbjct: 8   PTLPESVTEATIATWHKKPGDAVKRDEVLVEIETDKVVLEVPAPAAGVLSEILAEEGD-T 66

Query: 148 VPIGKLVCIIVENESDVAAFKDFKDDAPPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSP 207
           V +G+++  I E                 AAGA+A A      AAA P     AA A   
Sbjct: 67  VTVGQVLGRIDEGA---------------AAGAAAAAAAAAAAAAAAPAQAQAAAAAEQS 111

Query: 208 TPVPSQKTSGGTRVYASPLAKRLAAEKGLDLSSIGAGSGLFGSITSADLSKASKAGAVAA 267
                           SP A++LAAE GLD S++  G+G  G +T  D+  A  A A A 
Sbjct: 112 NDA------------LSPAARKLAAENGLDASAV-KGTGKGGRVTKEDVLAALAAAAAAP 158

Query: 268 PSKSAKPTANGPFTD-------LPVSGVRGVIAKRLLQSKQ---------------VIKL 305
            + +A   A  P          +P++ +R  IA+RLL+++                V+ L
Sbjct: 159 AAPAAAAPAAAPAPLGARPEERVPMTRLRKTIAERLLEAQNTTAMLTTFNEVDMTPVMDL 218

Query: 306 REQMNKALEKR-GAKLSINDFIIKATALASRRVPEANSSWQDTFIREYHSVDVSVAVNTD 364
           R+Q   A EK+ G KL    F +KA   A +R PE N+S     I  ++  D+ +AV T 
Sbjct: 219 RKQYKDAFEKKHGVKLGFMSFFVKAVVEALKRYPEVNASIDGDDIVYHNYYDIGIAVGTP 278

Query: 365 KGLFTPIVFDADKKGLVDISNDSRSLISFRRPVKFSEESNDVKTLAAKAKEGKLQPHEFQ 424
           +GL  P++ DAD+    +I                      +  LA KA++GKL   E  
Sbjct: 279 RGLVVPVLRDADQLSFAEI-------------------EKKIAELAKKARDGKLSIEELT 319

Length = 407

>gnl|CDD|233365 TIGR01347, sucB, 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component)

 Score =  154 bits (391), Expect = 9e-43
 Identities = 101/361 (27%), Positives = 160/361 (44%), Gaps = 69/361 (19%)

Query: 85  VALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAG 144
           + +P L+ ++  GT+  W KK GD +   + + EIETDK  +   +P +G L +IL   G
Sbjct: 3   IKVPELAESITEGTVAEWHKKVGDTVKRDENIVEIETDKVVLEVPSPADGVLQEILFKEG 62

Query: 145 SKDVPIGKLVCIIVENESDVAAFKDFKDDAPPAAGASAPAPPPPKVAAAPPPPPPKAAPA 204
              V  G+++ I+ E            +DA  A  A +        AA+    P  AA  
Sbjct: 63  DT-VESGQVLAILEEG-----------NDATAAPPAKSGEEKEETPAASAAAAPTAAANR 110

Query: 205 PSPTPVPSQKTSGGTRVYASPLAKRLAAEKGLDLSSIGAGSGLFGSITSADLSKASKAGA 264
           PS                 SP A+RLA E G+DLS++  G+G+ G +T  D+ K ++A A
Sbjct: 111 PS----------------LSPAARRLAKEHGIDLSAV-PGTGVTGRVTKEDIIKKTEAPA 153

Query: 265 VAA--PSKSAKPTANG---PFTDLPVSGVRGVIAKRLLQSKQ---------------VIK 304
            A      +A         P   + ++ +R  IA+RL +++                V++
Sbjct: 154 SAQQPAPAAAAKAPANFTRPEERVKMTRLRQRIAERLKEAQNSTAMLTTFNEVDMSAVME 213

Query: 305 LREQMNKALEKR-GAKLSINDFIIKATALASRRVPEANSSWQDTFIREYHSVDVSVAVNT 363
           LR++  +  EK+ G KL    F +KA   A +R PE N+      I      D+SVAV+T
Sbjct: 214 LRKRYKEEFEKKHGVKLGFMSFFVKAVVAALKRFPEVNAEIDGDDIVYKDYYDISVAVST 273

Query: 364 DKGLFTPIVFDADKKGLVDISNDSRSLISFRRPVKFSEESNDVKTLAAKAKEGKLQPHEF 423
           D+GL  P+V +AD+    DI                     ++  L  KA++GKL   + 
Sbjct: 274 DRGLVVPVVRNADRMSFADI-------------------EKEIADLGKKARDGKLTLEDM 314

Query: 424 Q 424
            
Sbjct: 315 T 315

This model describes the TCA cycle 2-oxoglutarate system E2 component, dihydrolipoamide succinyltransferase. It is closely related to the pyruvate dehydrogenase E2 component, dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase [Energy metabolism, TCA cycle]. Length = 403

>gnl|CDD|237011 PRK11892, PRK11892, pyruvate dehydrogenase subunit beta; Provisional

 Score =  138 bits (351), Expect = 2e-36
 Identities = 57/128 (44%), Positives = 74/128 (57%), Gaps = 3/128 (2%)

Query: 85  VALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAG 144
           + +PALSPTME GT+  W KKEGDK+  GD++AEIETDKATM  E  +EG L KILVP G
Sbjct: 5   ILMPALSPTMEEGTLAKWLKKEGDKVKSGDVIAEIETDKATMEVEAVDEGTLGKILVPEG 64

Query: 145 SKDVPIGKLVCIIVENESDVAAFKDFKDDAPPAAGASAPAPPPPKVAAAPPPPPPKAAPA 204
           ++ V +   + +++E     +   D       AA A+A AP     AAA    P  AAPA
Sbjct: 65  TEGVKVNTPIAVLLEEGESAS---DAGAAPAAAAEAAAAAPAAAAAAAAKKAAPAPAAPA 121

Query: 205 PSPTPVPS 212
                V +
Sbjct: 122 APAAEVAA 129

Length = 464

>gnl|CDD|236999 PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated

 Score =  130 bits (329), Expect = 8e-33
 Identities = 91/367 (24%), Positives = 144/367 (39%), Gaps = 77/367 (20%)

Query: 97  GTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCI 156
             +     K GDK+     L  +E DKA+M    P  G + +I V  G K          
Sbjct: 219 VEVTEVMVKVGDKVEAEQSLITVEGDKASMEVPAPFAGTVKEIKVNVGDK---------- 268

Query: 157 IVENESDVAAFKDFKDDAPPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKT- 215
            V+  S +  F+           A A AP   + AA  P      APA +P      K+ 
Sbjct: 269 -VKTGSLIMRFEV-------EGAAPAAAPAKQEAAAPAPAAAKAEAPAAAPAAKAEGKSE 320

Query: 216 --SGGTRVYASPLAKRLAAEKGLDLSSIGAGSGLFGSITSADLSKASKAGAVAAPSKSAK 273
                  V+A+PL +RLA E G++L+ +  G+G  G I   D+    K     A +  A 
Sbjct: 321 FAENDAYVHATPLVRRLAREFGVNLAKVK-GTGRKGRILKEDVQAYVKDAVKRAEAAPAA 379

Query: 274 PTANGPFTDL-----------------PVSGVRGVIAKRLLQSKQVI------------- 303
             A G    L                  +  ++ +    L ++  +I             
Sbjct: 380 AAAGGGGPGLLPWPKVDFSKFGEIEEVELGRIQKISGANLHRNWVMIPHVTQFDKADITE 439

Query: 304 --KLREQMNKALEKR--GAKLSINDFIIKATALASRRVPEANSSW-QDTFIREYHS-VDV 357
               R+Q N   EKR  G K++   FI+KA A A  ++P  NSS  +D         V++
Sbjct: 440 LEAFRKQQNAEAEKRKLGVKITPLVFIMKAVAAALEQMPRFNSSLSEDGQRLTLKKYVNI 499

Query: 358 SVAVNTDKGLFTPIVFDADKKGLVDISNDSRSLISFRRPVKFSEESNDVKTLAAKAKEGK 417
            +AV+T  GL  P+  D +KKG++++                   S ++  ++ KA++GK
Sbjct: 500 GIAVDTPNGLVVPVFKDVNKKGIIEL-------------------SRELMDISKKARDGK 540

Query: 418 LQPHEFQ 424
           L   + Q
Sbjct: 541 LTAGDMQ 547

Length = 633

>gnl|CDD|233366 TIGR01348, PDHac_trf_long, pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

 Score =  129 bits (325), Expect = 1e-32
 Identities = 97/367 (26%), Positives = 160/367 (43%), Gaps = 71/367 (19%)

Query: 95  EMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLV 154
           E  T++    K GD ++    L  +E+DKA+M    P  G +  + V  G   VP G L+
Sbjct: 128 EKVTVIEVLVKVGDTVSADQSLITLESDKASMEVPAPASGVVKSVKVKVGDS-VPTGDLI 186

Query: 155 CIIVENESDVAAFKDFKDDAPPAAGASAPAPPP---PKVAAAPPPPPPKAAPAPSPTPVP 211
             +    S            P  A A A A P    P      P   P AA A +P P  
Sbjct: 187 LTLSVAGS-----------TPATAPAPASAQPAAQSPAATQPEPAAAPAAAKAQAPAPQQ 235

Query: 212 SQKTSGGTRVYASPLAKRLAAEKGLDLSSIGAGSGLFGSITSADLSKASKAGAVAAPSKS 271
           +   +     +A+P  +RLA E G+DLS++  G+G+ G I   D+ +  K  +V A + +
Sbjct: 236 AGTQNPAKVDHAAPAVRRLAREFGVDLSAV-KGTGIKGRILREDVQRFVKEPSVRAQAAA 294

Query: 272 AKPTANGP---------------FTDLPVSGVRGVIAKRLLQSKQVI------------- 303
           A      P                 ++ +S +R +    L ++  +I             
Sbjct: 295 ASAAGGAPGALPWPNVDFSKFGEVEEVDMSRIRKISGANLTRNWTMIPHVTHFDKADITE 354

Query: 304 --KLREQMNKALEKRGAKLSINDFIIKATALASRRVPEANSSW----QDTFIREYHSVDV 357
               R+Q N A+EK G KL++   ++KA A A ++ P+ N+S     +   +++Y  V++
Sbjct: 355 MEAFRKQQNAAVEKEGVKLTVLHILMKAVAAALKKFPKFNASLDLGGEQLILKKY--VNI 412

Query: 358 SVAVNTDKGLFTPIVFDADKKGLVDISNDSRSLISFRRPVKFSEESNDVKTLAAKAKEGK 417
            VAV+T  GL  P++ D D+KG+ ++                   + ++  LA KA++GK
Sbjct: 413 GVAVDTPNGLLVPVIKDVDRKGITEL-------------------ALELSDLAKKARDGK 453

Query: 418 LQPHEFQ 424
           L P E Q
Sbjct: 454 LTPDEMQ 460

This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model [Energy metabolism, Pyruvate dehydrogenase]. Length = 546

>gnl|CDD|215782 pfam00198, 2-oxoacid_dh, 2-oxoacid dehydrogenases acyltransferase (catalytic domain)

 Score =  120 bits (303), Expect = 6e-32
 Identities = 42/124 (33%), Positives = 70/124 (56%), Gaps = 20/124 (16%)

Query: 302 VIKLREQMNKALEKRGAKLSINDFIIKATALASRRVPEANSSWQ-DTFIREYHSVDVSVA 360
           ++ LRE++ +  +K G KL+  DF++KA ALA +  PE N+SW  D  I     V++ +A
Sbjct: 22  LLALREKLKEDAKKEGLKLTFLDFLVKAVALALKEFPELNASWDGDAEIVYKKYVNIGIA 81

Query: 361 VNTDKGLFTPIVFDADKKGLVDISNDSRSLISFRRPVKFSEESNDVKTLAAKAKEGKLQP 420
           V T  GL  P++ +AD+K L++I                   + ++K LA +A++GKL+P
Sbjct: 82  VATPDGLIVPVIRNADRKSLLEI-------------------AKEIKDLAERARDGKLKP 122

Query: 421 HEFQ 424
            + Q
Sbjct: 123 EDLQ 126

These proteins contain one to three copies of a lipoyl binding domain followed by the catalytic domain. Length = 212

>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional

 Score =  124 bits (314), Expect = 9e-32
 Identities = 79/352 (22%), Positives = 127/352 (36%), Gaps = 92/352 (26%)

Query: 85  VALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAG 144
           + +P +  ++  GT+V W KK GD + E +++  IETDK ++    P  G + KI    G
Sbjct: 47  IKVPTMGDSISEGTVVEWKKKVGDYVKEDEVICIIETDKVSVDIRAPASGVITKIFAEEG 106

Query: 145 SKDVPIGKLVCIIVENESDVAAFKDFKDDAPPAAGASAP--APPPPKVAAAPPPPPPKAA 202
              V +G  +  I                APPAA  +A   A         P    P   
Sbjct: 107 D-TVEVGAPLSEIDTGG------------APPAAAPAAAAAAKAEKTTPEKPKAAAPTPE 153

Query: 203 PAPSPTPVPSQKTSGGTRVYASPLAKRLAAEKGLDLSSIGAGSGLFGSITSADLSKASKA 262
           P  +  P P                                              K  + 
Sbjct: 154 PPAASKPTPPAAA------------------------------------------KPPEP 171

Query: 263 GAVAAPSKSAKPTANGPFTDLPVSGVRGVIAKRLLQSKQ---------------VIKLRE 307
              A P  +    A+   T +P+S +R  IA+RL  S+                +++LR+
Sbjct: 172 APAAKPPPTPVARADPRETRVPMSRMRQRIAERLKASQNTCAMLTTFNECDMSALMELRK 231

Query: 308 QMNKALEKR-GAKLSINDFIIKATALASRRVPEANSSWQDTFIREYHSVDVSVAVNTDKG 366
           +     +K+ G KL      +KA+ +A +++P  N+      I   + VD+SVAV T  G
Sbjct: 232 EYKDDFQKKHGVKLGFMSAFVKASTIALKKMPIVNAYIDGDEIVYRNYVDISVAVATPTG 291

Query: 367 LFTPIVFDADKKGLVDISNDSRSLISFRRPVKFSEESNDVKTLAAKAKEGKL 418
           L  P++ + + K   +I    + L                  LA KA+  KL
Sbjct: 292 LVVPVIRNCENKSFAEI---EKELAD----------------LAEKARNNKL 324

Length = 418

>gnl|CDD|200219 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase

 Score =  125 bits (315), Expect = 3e-31
 Identities = 102/378 (26%), Positives = 164/378 (43%), Gaps = 61/378 (16%)

Query: 85  VALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAG 144
           V +P L  ++  GT+ SW K  GD +   + L E+ TDK      +P  G L +I  P  
Sbjct: 129 VKMPELGESVTEGTVTSWLKAVGDTVEVDEPLLEVSTDKVDTEIPSPVAGTLLEIRAPE- 187

Query: 145 SKDVPIGKLVCIIVENESDVAAFKDFKDDAPPAAGASAPAPPP---PKVAAAPPPPPPKA 201
              V +G ++ II  + +   A    ++   P+   S PAP P      AA  PP P  A
Sbjct: 188 DDTVEVGTVLAII-GDANAAPAEPAEEEAPAPSEAGSEPAPDPAARAPHAAPDPPAPAPA 246

Query: 202 APAPSPTPVPSQKTSGGTRVYASPLAKRLAAEKGLDLSSIGAGSGLFGSITSADLSKASK 261
               +     +  +SG +  Y +PL ++LA +KG+DLS++  G+G+ G I   D+  A+K
Sbjct: 247 PAKTAAPAAAAPVSSGDSGPYVTPLVRKLAKDKGVDLSTV-KGTGVGGRIRKQDVLAAAK 305

Query: 262 AG-----AVAAPSKSAKPTANGPFTDLP-------------VSGVRGVIAKRLLQSKQ-- 301
           A      A AAP+ +A P A                     ++ +R + A + ++S Q  
Sbjct: 306 AAEEARAAAAAPAAAAAPAAPAAAAKPAEPDTAKLRGTTQKMNRIRQITADKTIESLQTS 365

Query: 302 -------------VIKLREQMNKA-LEKRGAKLSINDFIIKATALASRRVPEANSSW-QD 346
                        V  LR +     LEK G  L+   F ++A   A +  P  N+S+  +
Sbjct: 366 AQLTQVHEVDMTRVAALRARAKNDFLEKNGVNLTFLPFFVQAVTEALKAHPNVNASYNAE 425

Query: 347 TFIREYH-SVDVSVAVNTDKGLFTPIVFDADKKGLVDISNDSRSLISFRRPVKFSEESND 405
           T    YH    V +AV+T +GL  P++ +A    L  +                   +  
Sbjct: 426 TKEVTYHDVEHVGIAVDTPRGLLVPVIHNAGDLSLPGL-------------------AKA 466

Query: 406 VKTLAAKAKEGKLQPHEF 423
           +  LAA+A++ KL+P E 
Sbjct: 467 INDLAARARDNKLKPDEL 484

This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817). Length = 579

>gnl|CDD|133458 cd06849, lipoyl_domain, Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases

 Score =  102 bits (256), Expect = 7e-27
 Identities = 38/71 (53%), Positives = 49/71 (69%), Gaps = 1/71 (1%)

Query: 87  LPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSK 146
           +P L  +M  GTIV W  KEGD + EGD+LAE+ETDKAT+  E P  G LAKILV  G  
Sbjct: 5   MPDLGESMTEGTIVEWLVKEGDSVEEGDVLAEVETDKATVEVEAPAAGVLAKILVEEGDT 64

Query: 147 DVPIGKLVCII 157
            VP+G+++ +I
Sbjct: 65  -VPVGQVIAVI 74

2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue. Length = 74

>gnl|CDD|133456 cd06663, Biotinyl_lipoyl_domains, Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS)

 Score = 75.2 bits (185), Expect = 4e-17
 Identities = 31/73 (42%), Positives = 44/73 (60%), Gaps = 1/73 (1%)

Query: 85  VALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAG 144
           + +P L+  +  GT+V W KK GDK+ +GD+LAEIE  KAT   E P+ G + K+LV  G
Sbjct: 2   ILIPDLAQHLGDGTVVKWLKKVGDKVKKGDVLAEIEAMKATSDVEAPKSGTVKKVLVKEG 61

Query: 145 SKDVPIGKLVCII 157
           +K V     +  I
Sbjct: 62  TK-VEGDTPLVKI 73

These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue. Length = 73

>gnl|CDD|184875 PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional

 Score = 78.1 bits (193), Expect = 7e-16
 Identities = 31/110 (28%), Positives = 51/110 (46%), Gaps = 8/110 (7%)

Query: 84  RVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPA 143
            + +P    +M  G +  W  +EGD++ +GD L ++ETDK T   E P  G L + +   
Sbjct: 4   PITMPKWGLSMTEGKVAGWLVQEGDEVEKGDELLDVETDKITNEVEAPAAGTLRRQVAQE 63

Query: 144 GSKDVPIGKLVCIIVENE-SD------VAAFKDFKDDAPPAAGASAPAPP 186
           G   +P+G L+ ++ + E SD      +A F             + PAP 
Sbjct: 64  GE-TLPVGALLAVVADAEVSDAEIDAFIAPFARRFAPEGIDEEDAGPAPR 112

Length = 371

>gnl|CDD|177871 PLN02226, PLN02226, 2-oxoglutarate dehydrogenase E2 component

 Score = 78.3 bits (192), Expect = 1e-15
 Identities = 89/349 (25%), Positives = 137/349 (39%), Gaps = 89/349 (25%)

Query: 70  VGSLSQRLVR----EGNDRV--ALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDK 123
           V S  QR VR    E  D V   +P +  ++  GT+ ++ KK G+++   + +A+IETDK
Sbjct: 73  VSSTLQRWVRPFSSESGDTVEAVVPHMGESITDGTLATFLKKPGERVQADEAIAQIETDK 132

Query: 124 ATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENESDVAAFKDFKDDAPPAAGASAP 183
            T+   +P  G + + LV  G    P G  V II ++E               AA    P
Sbjct: 133 VTIDIASPASGVIQEFLVKEGDTVEP-GTKVAIISKSED--------------AASQVTP 177

Query: 184 APPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRVYASPLAKRLAAEKGLDLSSIGA 243
           +   P+     P PP +    P              +V ++P+A++              
Sbjct: 178 SQKIPETTDPKPSPPAEDKQKP--------------KVESAPVAEK-------------- 209

Query: 244 GSGLFGSITSADLSKASKAGAVAAPSKSAKPTANGPFTD----LPVSGVRGVIAKRLLQS 299
                            KA +   P K +      P  +    +P++ +R  +A RL  S
Sbjct: 210 ----------------PKAPSSPPPPKQSAKEPQLPPKERERRVPMTRLRKRVATRLKDS 253

Query: 300 KQ---------------VIKLREQMNKA-LEKRGAKLSINDFIIKATALASRRVPEANS- 342
           +                ++KLR Q   A  EK G KL +    IKA   A +  P  N+ 
Sbjct: 254 QNTFALLTTFNEVDMTNLMKLRSQYKDAFYEKHGVKLGLMSGFIKAAVSALQHQPVVNAV 313

Query: 343 -SWQDTFIREYHSVDVSVAVNTDKGLFTPIVFDADKKGLVDISNDSRSL 390
               D   R+Y  VD+S+AV T KGL  P++  ADK    +I      L
Sbjct: 314 IDGDDIIYRDY--VDISIAVGTSKGLVVPVIRGADKMNFAEIEKTINGL 360

Length = 463

>gnl|CDD|215782 pfam00198, 2-oxoacid_dh, 2-oxoacid dehydrogenases acyltransferase (catalytic domain)

 Score = 71.0 bits (175), Expect = 3e-14
 Identities = 24/44 (54%), Positives = 31/44 (70%)

Query: 39  KGGTVSISNLGMFGIKNFSAIINPPQACILAVGSLSQRLVREGN 82
           +GGT +ISNLGMFG+  F+ IINPPQ  IL VG++ +R V    
Sbjct: 126 QGGTFTISNLGMFGVTFFTPIINPPQVAILGVGAIRKRPVVVDG 169

These proteins contain one to three copies of a lipoyl binding domain followed by the catalytic domain. Length = 212

>gnl|CDD|237000 PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed

 Score = 73.7 bits (182), Expect = 4e-14
 Identities = 36/110 (32%), Positives = 48/110 (43%), Gaps = 9/110 (8%)

Query: 97  GTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCI 156
             ++ W  KEGD + E   L  +ETDKATM   +P  G + +I V  G   V +G L+  
Sbjct: 16  VEVIEWLVKEGDTVEEDQPLVTVETDKATMEIPSPAAGVVKEIKVKVGDT-VSVGGLL-A 73

Query: 157 IVENESDVAAFKDFKDDAPPAAGASAPAPPPPKVAAAPPPPPPKAAPAPS 206
           ++E     AA       A   A A+APA       A     P  AA A  
Sbjct: 74  VIEAAGAAAA-------AAAPAAAAAPAAAAAAAPAPAAAAPAAAAAAAG 116

Length = 547

>gnl|CDD|237001 PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed

 Score = 71.4 bits (176), Expect = 2e-13
 Identities = 23/40 (57%), Positives = 30/40 (75%)

Query: 39  KGGTVSISNLGMFGIKNFSAIINPPQACILAVGSLSQRLV 78
           +GGT +ISNLGMFG   F+ IINPP+  IL VG++ +R V
Sbjct: 324 QGGTFTISNLGMFGGDYFTPIINPPEVAILGVGAIVERPV 363

Length = 411

>gnl|CDD|233367 TIGR01349, PDHac_trf_mito, pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

 Score = 70.2 bits (172), Expect = 4e-13
 Identities = 29/40 (72%), Positives = 35/40 (87%)

Query: 39  KGGTVSISNLGMFGIKNFSAIINPPQACILAVGSLSQRLV 78
           +GGT +ISNLGMFGIK+F+AIINPPQACILAVG++    V
Sbjct: 347 QGGTFTISNLGMFGIKDFTAIINPPQACILAVGAVEDVAV 386

This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score [Energy metabolism, Pyruvate dehydrogenase]. Length = 436

>gnl|CDD|201182 pfam00364, Biotin_lipoyl, Biotin-requiring enzyme

 Score = 63.0 bits (154), Expect = 8e-13
 Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 2/73 (2%)

Query: 85  VALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAG 144
           +  P +  +++ GT   W  K GDK+  G +L E+E  K  M    P  G + +ILV  G
Sbjct: 3   IKSPMIGESVKEGT-AEWLVKVGDKVKAGQVLCEVEAMKMEMEIPAPVAGVVKEILVKEG 61

Query: 145 SKDVPIGKLVCII 157
              V +G  +  I
Sbjct: 62  DT-VEVGDPLAKI 73

This family covers two Prosite entries, the conserved lysine residue binds biotin in one group and lipoic acid in the other. Note that the HMM does not currently recognise the Glycine cleavage system H proteins. Length = 73

>gnl|CDD|184847 PRK14843, PRK14843, dihydrolipoamide acetyltransferase; Provisional

 Score = 67.2 bits (164), Expect = 3e-12
 Identities = 58/230 (25%), Positives = 102/230 (44%), Gaps = 49/230 (21%)

Query: 224 SPLAKRLAAEKGLDLSSIGAGSGLFGSITSAD----LSKASKAGAVAAPSKSAK------ 273
           SPLAKR+A E  +    I  G+G  G I   D    L +  +  ++ +P++  K      
Sbjct: 52  SPLAKRIALEHNIAWQEI-QGTGHRGKIMKKDVLALLPENIENDSIKSPAQIEKVEEVPD 110

Query: 274 -PTANGPFTDLPVSGVRGVIAKRLLQS---------------KQVIKLREQ-MNKALEKR 316
             T  G    +P++ +R VIA+R+++S                +++ LR++ +   +E  
Sbjct: 111 NVTPYGEIERIPMTPMRKVIAQRMVESYLTAPTFTLNYEVDMTEMLALRKKVLEPIMEAT 170

Query: 317 GAKLSINDFIIKATALASRRVPEANSSWQD--TFIREYHSVDVSVAVNTDKGLFTPIVFD 374
           G K ++ D +  A      + P  N+S  +    I  ++ V++++AV  D GL TP+V++
Sbjct: 171 GKKTTVTDLLSLAVVKTLMKHPYINASLTEDGKTIITHNYVNLAMAVGMDNGLMTPVVYN 230

Query: 375 ADKKGLVDISNDSRSLISFRRPVKFSEESNDVKTLAAKAKEGKLQPHEFQ 424
           A+K  L                   SE     K +  +  +GKL P E Q
Sbjct: 231 AEKMSL-------------------SELVVAFKDVIGRTLDGKLAPSELQ 261

Length = 347

>gnl|CDD|215289 PLN02528, PLN02528, 2-oxoisovalerate dehydrogenase E2 component

 Score = 67.4 bits (165), Expect = 3e-12
 Identities = 67/320 (20%), Positives = 130/320 (40%), Gaps = 63/320 (19%)

Query: 99  IVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGK-LVCII 157
           ++ W  KEGD++ E   L E+++DKAT+   +  +G +A+I    G   V +G+ L+ I+
Sbjct: 15  LLRWFVKEGDQVEEFQPLCEVQSDKATIEITSRYKGKVAQINFSPGDI-VKVGETLLKIM 73

Query: 158 VENESDVAAFKDFKDDAPPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSG 217
           VE+   + +                                P  +          ++ S 
Sbjct: 74  VEDSQHLRS---------------------------DSLLLPTDSSNIVSLAESDERGSN 106

Query: 218 GTRVYASPLAKRLAAEKGLDLSSIGAGSGLFGSITSAD-LSKASKAGAVAAPS------- 269
            + V ++P  + LA + G+DL+ I  G+G  G +   D L  A++ G V   S       
Sbjct: 107 LSGVLSTPAVRHLAKQYGIDLNDI-LGTGKDGRVLKEDVLKYAAQKGVVKDSSSAEEATI 165

Query: 270 ---------KSAKPTANGPFTDLPVSGVRGVIAKRLLQSKQV--------------IKLR 306
                     S     +     +P+ G +  + K +  + +V              ++L+
Sbjct: 166 AEQEEFSTSVSTPTEQSYEDKTIPLRGFQRAMVKTMTAAAKVPHFHYVEEINVDALVELK 225

Query: 307 EQMNKALEKRGAKLSINDFIIKATALASRRVPEANSSW-QDTF-IREYHSVDVSVAVNTD 364
               +       K +   F+IK+ ++A  + P  NS + ++T  IR   S ++ VA+ T+
Sbjct: 226 ASFQENNTDPTVKHTFLPFLIKSLSMALSKYPLLNSCFNEETSEIRLKGSHNIGVAMATE 285

Query: 365 KGLFTPIVFDADKKGLVDIS 384
            GL  P + +     L++I+
Sbjct: 286 HGLVVPNIKNVQSLSLLEIT 305

Length = 416

>gnl|CDD|200219 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase

 Score = 65.0 bits (158), Expect = 3e-11
 Identities = 44/142 (30%), Positives = 60/142 (42%), Gaps = 22/142 (15%)

Query: 85  VALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAG 144
           V +PAL  ++  GT+ SW K  GD +   + L E+ TDK      +P  G L +I  P  
Sbjct: 5   VKMPALGESVTEGTVTSWLKAVGDTVEADEPLLEVSTDKVDTEIPSPAAGVLLEIRAPE- 63

Query: 145 SKDVPIGKLVCIIVENESDVAAFKDFKDDAPPAAGASAPAPPPPKVAAAPPPPPPKAAP- 203
              V +G ++ II E                P    S PAP  P+  AAP P  P  AP 
Sbjct: 64  DDTVEVGGVLAIIGE----------------PGEAGSEPAPAAPEPEAAPEPEAPAPAPT 107

Query: 204 ----APSPTPVPSQKTSGGTRV 221
               AP+P    +  +   T V
Sbjct: 108 PAAEAPAPAAPQAGGSGEATEV 129

This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817). Length = 579

>gnl|CDD|237002 PRK11857, PRK11857, dihydrolipoamide acetyltransferase; Reviewed

 Score = 61.3 bits (149), Expect = 2e-10
 Identities = 62/246 (25%), Positives = 107/246 (43%), Gaps = 68/246 (27%)

Query: 220 RVYASPLAKRLAAEKGLDLSSIGAGSGLFGSITSADL--------SKASKAGAVAAPS-- 269
           ++ A+P+A+ LA + G+D+S +  GSG  G I + D+        S  + A A +  S  
Sbjct: 1   KILATPIARALAKKLGIDISLL-KGSGRDGKILAEDVENFIKSLKSAPTPAEAASVSSAQ 59

Query: 270 ---KSAKPTANGPFTDL---PVSGVRGVIAKRLLQSKQVI---------------KLREQ 308
              K+A P A  P  +     V+ +R  IA+ +  S   +                LR+ 
Sbjct: 60  QAAKTAAPAAAPPKLEGKREKVAPIRKAIARAMTNSWSNVAYVNLVNEIDMTKLWDLRKS 119

Query: 309 MNKALEK-RGAKLSINDFIIKATALASRRVP-------EANSS--WQDTFIREYHSVDVS 358
           +   + K  G KL+   FI KA  +A +  P       EA S   + DT       +++ 
Sbjct: 120 VKDPVLKTEGVKLTFLPFIAKAILIALKEFPIFAAKYDEATSELVYPDT-------LNLG 172

Query: 359 VAVNTDKGLFTPIVFDADKKGLVDISNDSRSLISFRRPVKFSEESNDVKTLAAKAKEGKL 418
           +AV+T+ GL  P++ +A K  +V+I                   + ++  LA  A+E K+
Sbjct: 173 IAVDTEAGLMVPVIKNAQKLSIVEI-------------------AKEISRLAKAARERKI 213

Query: 419 QPHEFQ 424
           +P E +
Sbjct: 214 KPDEMK 219

Length = 306

>gnl|CDD|215397 PLN02744, PLN02744, dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex

 Score = 61.4 bits (149), Expect = 3e-10
 Identities = 26/40 (65%), Positives = 32/40 (80%), Gaps = 1/40 (2%)

Query: 40  GGTVSISNLG-MFGIKNFSAIINPPQACILAVGSLSQRLV 78
           GGT ++SNLG  FGIK F AIINPPQ+ ILAVGS  +R++
Sbjct: 451 GGTFTVSNLGGPFGIKQFCAIINPPQSAILAVGSAEKRVI 490

Length = 539

>gnl|CDD|223582 COG0508, AceF, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]

 Score = 60.1 bits (146), Expect = 7e-10
 Identities = 27/53 (50%), Positives = 35/53 (66%)

Query: 38  KKGGTVSISNLGMFGIKNFSAIINPPQACILAVGSLSQRLVREGNDRVALPAL 90
            +GGT +ISNLGMFG   F+ IINPPQ  IL VG++ +R V  G + V  P +
Sbjct: 316 MQGGTFTISNLGMFGSLMFTPIINPPQVAILGVGAIEERPVVVGGEIVVRPMM 368

Length = 404

>gnl|CDD|236999 PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated

 Score = 58.9 bits (143), Expect = 2e-09
 Identities = 31/106 (29%), Positives = 43/106 (40%), Gaps = 16/106 (15%)

Query: 97  GTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCI 156
             +     K GDK+     L  +E DKA+M   +P+ G + +I V  G K V  G L+ I
Sbjct: 15  VEVTEILVKVGDKVEAEQSLITVEGDKASMEVPSPQAGVVKEIKVKVGDK-VETGALIMI 73

Query: 157 IVENESDVAAFKDFKDDAPPAAGASAPAPPPPKVAAAPPPPPPKAA 202
                           ++   A  +APA    K  AAP   P  AA
Sbjct: 74  F---------------ESADGAADAAPAQAEEKKEAAPAAAPAAAA 104

Length = 633

>gnl|CDD|202412 pfam02817, E3_binding, e3 binding domain

 Score = 50.5 bits (122), Expect = 8e-09
 Identities = 21/39 (53%), Positives = 28/39 (71%), Gaps = 1/39 (2%)

Query: 220 RVYASPLAKRLAAEKGLDLSSIGAGSGLFGSITSADLSK 258
           RV+ASP A++LAAEKG+DLS +  G+G  G IT  D+  
Sbjct: 2   RVFASPAARKLAAEKGIDLSQV-KGTGPGGRITKEDVLA 39

This family represents a small domain of the E2 subunit of 2-oxo-acid dehydrogenases responsible for the binding of the E3 subunit. Length = 39

>gnl|CDD|236999 PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated

 Score = 51.9 bits (125), Expect = 4e-07
 Identities = 30/97 (30%), Positives = 39/97 (40%), Gaps = 8/97 (8%)

Query: 97  GTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCI 156
             +     K GD +     L  +E DKA+M    P  G + +I V  G K V  G L+ +
Sbjct: 118 VEVTEILVKVGDTVEAEQSLITVEGDKASMEVPAPFAGTVKEIKVNVGDK-VSTGSLIMV 176

Query: 157 IVENESDVAAFKDFKDDAPPAAGASAPAPPPPKVAAA 193
                   AA       AP AA A+APA  P   A  
Sbjct: 177 FEVAGEAPAA-------APAAAEAAAPAAAPAAAAGV 206

Length = 633

>gnl|CDD|233366 TIGR01348, PDHac_trf_long, pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

 Score = 49.9 bits (119), Expect = 2e-06
 Identities = 34/112 (30%), Positives = 52/112 (46%), Gaps = 8/112 (7%)

Query: 95  EMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLV 154
           E G ++    K GDK+  G  L  +E+DKA+M   +   G + +I V  G   +P+G ++
Sbjct: 12  EEGEVIEVLVKPGDKVEAGQSLITLESDKASMEVPSSAAGIIKEIKVKVGDT-LPVGGVI 70

Query: 155 CIIVENESDVAAFKDFKDDAPPAAGASAPAPPPPKVAAAPPPPPPKAAPAPS 206
             + E  +   A  + K +A PA  A APAP      AA     P A  +  
Sbjct: 71  ATL-EVGAGAQAQAEAKKEAAPAPTAGAPAP------AAQAQAAPAAGQSSG 115

This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model [Energy metabolism, Pyruvate dehydrogenase]. Length = 546

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 49.1 bits (118), Expect = 3e-06
 Identities = 25/64 (39%), Positives = 28/64 (43%)

Query: 172 DDAPPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRVYASPLAKRLA 231
             A  AA ASAPA  P   A A P P P AA AP+  P P+   +      A P A   A
Sbjct: 47  AAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAA 106

Query: 232 AEKG 235
           A   
Sbjct: 107 APAA 110

Length = 1228

>gnl|CDD|237000 PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed

 Score = 46.7 bits (112), Expect = 1e-05
 Identities = 19/48 (39%), Positives = 27/48 (56%)

Query: 39  KGGTVSISNLGMFGIKNFSAIINPPQACILAVGSLSQRLVREGNDRVA 86
           +GG  +IS+LG  G   F+ IIN P+  IL VG    + V +G + V 
Sbjct: 461 QGGCFTISSLGGIGGTAFTPIINAPEVAILGVGKSQMKPVWDGKEFVP 508

Length = 547

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 22/61 (36%), Positives = 25/61 (40%), Gaps = 1/61 (1%)

Query: 174 APPAAGASAPAPPPPKVAA-APPPPPPKAAPAPSPTPVPSQKTSGGTRVYASPLAKRLAA 232
           A P A A A AP     AA AP   P  AA AP+  P  +          A+P A   AA
Sbjct: 382 ARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAA 441

Query: 233 E 233
            
Sbjct: 442 P 442

Length = 618

>gnl|CDD|184847 PRK14843, PRK14843, dihydrolipoamide acetyltransferase; Provisional

 Score = 46.4 bits (110), Expect = 2e-05
 Identities = 24/62 (38%), Positives = 35/62 (56%)

Query: 33  LAGLRKKGGTVSISNLGMFGIKNFSAIINPPQACILAVGSLSQRLVREGNDRVALPALSP 92
           LA    +  T +ISNLGMFG+++F  IIN P + IL V S  ++ V    + V  P +S 
Sbjct: 255 LAPSELQNSTFTISNLGMFGVQSFGPIINQPNSAILGVSSTIEKPVVVNGEIVIRPIMSL 314

Query: 93  TM 94
            +
Sbjct: 315 GL 316

Length = 347

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 46.0 bits (110), Expect = 3e-05
 Identities = 18/58 (31%), Positives = 22/58 (37%)

Query: 174 APPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRVYASPLAKRLA 231
           AP    A+APA PP   AAA     P A PA +    P+              A  +A
Sbjct: 71  APAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEVTPLRGAAAAVA 128

Length = 1228

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 45.9 bits (109), Expect = 3e-05
 Identities = 18/51 (35%), Positives = 22/51 (43%)

Query: 174 APPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRVYAS 224
              AA A APA  P   A+AP  PP  A PAP   P  +   +      A+
Sbjct: 394 VAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAA 444

Length = 618

>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional

 Score = 44.3 bits (105), Expect = 9e-05
 Identities = 23/49 (46%), Positives = 32/49 (65%)

Query: 40  GGTVSISNLGMFGIKNFSAIINPPQACILAVGSLSQRLVREGNDRVALP 88
           GGT +ISN G+FG    + IINPPQ+ IL + ++ +R V  GN+ V  P
Sbjct: 331 GGTFTISNGGVFGSLMGTPIINPPQSAILGMHAIKKRPVVVGNEIVIRP 379

Length = 418

>gnl|CDD|133459 cd06850, biotinyl_domain, The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase

 Score = 40.1 bits (95), Expect = 9e-05
 Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 97  GTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCI 156
           GT+V    KEGDK+  G  LA +E  K       P  G + +ILV  G + V  G+L+ +
Sbjct: 8   GTVVKVLVKEGDKVEAGQPLAVLEAMKMENEVTAPVAGVVKEILVKEGDQ-VEAGQLLVV 66

Query: 157 I 157
           I
Sbjct: 67  I 67

This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine. Length = 67

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 44.2 bits (105), Expect = 1e-04
 Identities = 17/40 (42%), Positives = 20/40 (50%)

Query: 174 APPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQ 213
           A PAA  +  A  P   AA  P   P+ APAP+P P P  
Sbjct: 404 AAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPS 443

Length = 824

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.7 bits (103), Expect = 1e-04
 Identities = 31/132 (23%), Positives = 41/132 (31%), Gaps = 6/132 (4%)

Query: 164 VAAFKDFKDDAPPAAGASAPAPPPPKVAAAPPP---PPPKAAPAPSPTPVPSQKTSGGTR 220
           +AA +      P  A A APAP     AAA P    P P AA A +     +   +    
Sbjct: 433 LAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPA 492

Query: 221 VYASPLAKRLA---AEKGLDLSSIGAGSGLFGSITSADLSKASKAGAVAAPSKSAKPTAN 277
               P  + L    A              +  SI     +    A    AP+ +A P   
Sbjct: 493 DDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAAAPAPR 552

Query: 278 GPFTDLPVSGVR 289
                 PV   R
Sbjct: 553 AAAATEPVVAPR 564

Length = 700

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.3 bits (102), Expect = 2e-04
 Identities = 31/109 (28%), Positives = 41/109 (37%), Gaps = 5/109 (4%)

Query: 173 DAPPAAGASAPAPPPPKVAAAP-----PPPPPKAAPAPSPTPVPSQKTSGGTRVYASPLA 227
            A PA  A+AP   P   AAAP      P  P AAPA +P    + +         SP  
Sbjct: 371 GAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAP 430

Query: 228 KRLAAEKGLDLSSIGAGSGLFGSITSADLSKASKAGAVAAPSKSAKPTA 276
           + LAA +       G       +  +A  + A  A A   P  +A   A
Sbjct: 431 EALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAA 479

Length = 700

>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)

 Score = 43.0 bits (101), Expect = 2e-04
 Identities = 17/38 (44%), Positives = 18/38 (47%)

Query: 174 APPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVP 211
              AA A APA PPP    A PP P    P  +P P P
Sbjct: 48  PSTAAAAPAPAAPPPPPPPAAPPAPQPDDPNAAPPPPP 85

This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 43.8 bits (103), Expect = 2e-04
 Identities = 28/111 (25%), Positives = 37/111 (33%), Gaps = 2/111 (1%)

Query: 174  APPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRVYASPLAKRLAAE 233
             PP   A+  A P    A APP  P   A    P       T+ G    A P A      
Sbjct: 2721 LPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPP 2780

Query: 234  KGLDLSSIGAGSGLFGSITSADLSKASKAGAVAAPSKSAKPTANGPFTDLP 284
            + L   ++ + S    S+ S      +   A      +A P A  P   LP
Sbjct: 2781 RRLTRPAVASLSESRESLPSP--WDPADPPAAVLAPAAALPPAASPAGPLP 2829

Length = 3151

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 43.0 bits (102), Expect = 3e-04
 Identities = 20/73 (27%), Positives = 26/73 (35%), Gaps = 5/73 (6%)

Query: 167 FKDFKDDAPPAAGASAP-----APPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRV 221
           F D+   +  A  A+A      A  P    AA  P  P  AP  +  P    K +     
Sbjct: 33  FADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAA 92

Query: 222 YASPLAKRLAAEK 234
            A+P A   AA  
Sbjct: 93  AAAPAAPPAAAAA 105

Length = 1228

>gnl|CDD|220603 pfam10152, DUF2360, Predicted coiled-coil domain-containing protein (DUF2360)

 Score = 40.5 bits (95), Expect = 3e-04
 Identities = 21/59 (35%), Positives = 23/59 (38%), Gaps = 5/59 (8%)

Query: 168 KDFKDDAPPAAGASA-----PAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRV 221
           +D      P   ASA     P PPPP  A A  PPPP+A   P   P P         V
Sbjct: 51  EDVTVQTTPPPPASAITNGGPPPPPPARAEAASPPPPEAPAEPPAEPEPEAPAENTVTV 109

This is the conserved 140 amino acid region of a family of proteins conserved from nematodes to humans. One C. elegans member is annotated as a Daf-16-dependent longevity protein 1 but this could not be confirmed. The function is unknown. Length = 147

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 42.5 bits (101), Expect = 3e-04
 Identities = 22/101 (21%), Positives = 32/101 (31%), Gaps = 14/101 (13%)

Query: 172 DDAPPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRVYASPLAKRLA 231
            + PP + A A +        A   PP   A  P P   P Q  +       S L   LA
Sbjct: 368 PEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQL---LA 424

Query: 232 AEKGLDLSSIGAGSGLFGSITSADLSKASKAGAVAAPSKSA 272
           A + L  +             +    K+  A A  A   ++
Sbjct: 425 ARQQLQRAQ-----------GATKAKKSEPAAASRARPVNS 454

Length = 647

>gnl|CDD|215289 PLN02528, PLN02528, 2-oxoisovalerate dehydrogenase E2 component

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 19/50 (38%), Positives = 32/50 (64%), Gaps = 1/50 (2%)

Query: 40  GGTVSISNLGMFGIKNFSAIINPPQACILAVGSLSQRLVREGNDRVALPA 89
           GGT+++SN+G  G K  S ++N P+  I+A+G + Q++ R  +D    PA
Sbjct: 327 GGTITLSNIGAIGGKFGSPVLNLPEVAIIALGRI-QKVPRFVDDGNVYPA 375

Length = 416

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.4 bits (100), Expect = 4e-04
 Identities = 31/123 (25%), Positives = 43/123 (34%), Gaps = 10/123 (8%)

Query: 166 AFK-DFKDDAPPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRVYAS 224
           AFK     +A   A    PA P     AA P     AAPAP+  P  +  ++      A+
Sbjct: 363 AFKPAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAP-AAAASAPAAPPAAA 421

Query: 225 PLAKRLAAEKGLDLSSIGAGSGLFGSITSADLSKASKAGAVAAPSKSAKPTANGPFTDLP 284
           P A   A       ++  A          A ++ A    A AAP   A P    P   + 
Sbjct: 422 PPAPVAAPAAAAPAAAPAAA--------PAAVALAPAPPAQAAPETVAIPVRVAPEPAVA 473

Query: 285 VSG 287
            + 
Sbjct: 474 SAA 476

Length = 618

>gnl|CDD|235571 PRK05704, PRK05704, dihydrolipoamide succinyltransferase; Validated

 Score = 41.7 bits (99), Expect = 5e-04
 Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 4/56 (7%)

Query: 40  GGTVSISNLGMFGIKNFSAIINPPQACILAVGSLSQRLVREGNDRVALP----ALS 91
           GGT +I+N G+FG    + IINPPQ+ IL +  + +R V      V  P    ALS
Sbjct: 320 GGTFTITNGGVFGSLMSTPIINPPQSAILGMHKIKERPVAVNGQIVIRPMMYLALS 375

Length = 407

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 42.2 bits (100), Expect = 5e-04
 Identities = 14/45 (31%), Positives = 16/45 (35%)

Query: 171 KDDAPPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKT 215
              A   A    PA      AA   PP   AA AP+   V  + T
Sbjct: 74  PPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEVT 118

Length = 1228

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 41.8 bits (99), Expect = 6e-04
 Identities = 14/60 (23%), Positives = 19/60 (31%)

Query: 174 APPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRVYASPLAKRLAAE 233
           AP AA A+     P     A   P     PA +     +          A+P A  +  E
Sbjct: 57  APAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDE 116

Length = 1228

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 41.8 bits (99), Expect = 6e-04
 Identities = 14/46 (30%), Positives = 15/46 (32%)

Query: 172 DDAPPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSG 217
             AP A    A A       AAPP     AAPA +          G
Sbjct: 77  AAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEVTPLRG 122

Length = 1228

>gnl|CDD|185616 PTZ00436, PTZ00436, 60S ribosomal protein L19-like protein; Provisional

 Score = 41.5 bits (96), Expect = 6e-04
 Identities = 40/118 (33%), Positives = 50/118 (42%), Gaps = 6/118 (5%)

Query: 165 AAFKDFKDDAPPAAGASAP--APPPPKVAAAPPP----PPPKAAPAPSPTPVPSQKTSGG 218
           AA    K  APPA  A+AP  A   P  AAAPP     PP KAA  P+    P  K +  
Sbjct: 225 AAAAPAKAAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAP 284

Query: 219 TRVYASPLAKRLAAEKGLDLSSIGAGSGLFGSITSADLSKASKAGAVAAPSKSAKPTA 276
               A+P AK  AA      +   A +    +      + A  A A   P+K+A P A
Sbjct: 285 PAKAAAPPAKAAAAPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAATPPAKAAAPPA 342

Length = 357

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 41.5 bits (98), Expect = 6e-04
 Identities = 30/117 (25%), Positives = 41/117 (35%), Gaps = 8/117 (6%)

Query: 161 ESDVAAFKDFKDDAPPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTR 220
           +SD+AA       APPAA  +APA   P  AAAP      AAPA  P P   +     T 
Sbjct: 45  DSDLAAL------APPAA--AAPAAAQPPPAAAPAAVSRPAAPAAEPAPWLVEHAKRLTA 96

Query: 221 VYASPLAKRLAAEKGLDLSSIGAGSGLFGSITSADLSKASKAGAVAAPSKSAKPTAN 277
                +A+  A       +             +  L++A+ A         A     
Sbjct: 97  QREQLVARAAAPAAPEAQAPAAPAERAAAENAARRLARAAAAAPRPRVPADAAAAVA 153

Length = 484

>gnl|CDD|181304 PRK08225, PRK08225, acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

 Score = 37.5 bits (87), Expect = 8e-04
 Identities = 22/50 (44%), Positives = 27/50 (54%), Gaps = 9/50 (18%)

Query: 78  VREGNDRVALPALSPTMEM-------GTIVSWAKKEGDKLNEGDLLAEIE 120
           V EG D V L   S  ME+       GT+     +EGD +NEGD+L EIE
Sbjct: 23  VEEGQDVVILE--SMKMEIPIVAEEAGTVKKINVQEGDFVNEGDVLLEIE 70

Length = 70

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 41.4 bits (98), Expect = 9e-04
 Identities = 12/57 (21%), Positives = 15/57 (26%)

Query: 174 APPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRVYASPLAKRL 230
           A   A  +   P     AA P P    AA A    P  +   +             L
Sbjct: 64  AKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEVTPL 120

Length = 1228

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 40.6 bits (96), Expect = 0.001
 Identities = 43/197 (21%), Positives = 66/197 (33%), Gaps = 48/197 (24%)

Query: 165 AAFKDFKDDAPPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRVYAS 224
            ++++F  D  P + A+  A      AAA  P    AA AP+  P P+   +        
Sbjct: 27  PSWREFFADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAA-PAPAPPAAAAPAAPPK 85

Query: 225 PLAKRLAAEKGLDLSSIGAGSGLFGSITSADLSKASKAGAVAAPSKSAKPTANGPFTDLP 284
           P A                               A+ A   A P+ +A         +  
Sbjct: 86  PAAA-----------------------------AAAAAAPAAPPAAAAAAAPAAAAVEDE 116

Query: 285 VSGVRGV---IAKRLLQSKQV----------IKL----REQMNKALEK-RGAKLSINDFI 326
           V+ +RG    +AK +  S +V           KL    R  +N  L++ RG K+S    I
Sbjct: 117 VTPLRGAAAAVAKNMDASLEVPTATSVRAVPAKLLIDNRIVINNHLKRTRGGKVSFTHLI 176

Query: 327 IKATALASRRVPEANSS 343
             A   A +  P  N  
Sbjct: 177 GYALVQALKAFPNMNRH 193

Length = 1228

>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)

 Score = 40.6 bits (95), Expect = 0.001
 Identities = 23/59 (38%), Positives = 25/59 (42%), Gaps = 5/59 (8%)

Query: 174 APPAAGASAPAPPPPK-----VAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRVYASPLA 227
           A PA   + PAPPPP       A AP  PPP   PA  P P P    +      A P A
Sbjct: 32  ALPATANADPAPPPPPPSTAAAAPAPAAPPPPPPPAAPPAPQPDDPNAAPPPPPADPNA 90

This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 41.5 bits (97), Expect = 0.001
 Identities = 21/60 (35%), Positives = 24/60 (40%), Gaps = 3/60 (5%)

Query: 173  DAPPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPT---PVPSQKTSGGTRVYASPLAKR 229
            D P A  A A A PP    A P PPP  A P   P    P P     GG+      + +R
Sbjct: 2806 DPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRR 2865

Length = 3151

>gnl|CDD|236712 PRK10547, PRK10547, chemotaxis protein CheA; Provisional

 Score = 41.3 bits (97), Expect = 0.001
 Identities = 16/85 (18%), Positives = 27/85 (31%), Gaps = 5/85 (5%)

Query: 136 LAKILVPAGSKDVPIGKLVCIIVENES----DVAAFKDFKDDAPPAAGASAPAPPPPKVA 191
           L   L  + ++D  I  ++C ++E +        A    K +        +P    P V 
Sbjct: 196 LEATLPGSVAED-DITAVLCFVIEADQITFETAVAAPQEKAEETTEVVEVSPKISVPPVL 254

Query: 192 AAPPPPPPKAAPAPSPTPVPSQKTS 216
                  P        T   S+ TS
Sbjct: 255 KLAAEQAPAGRVEREKTARSSESTS 279

Length = 670

>gnl|CDD|185616 PTZ00436, PTZ00436, 60S ribosomal protein L19-like protein; Provisional

 Score = 39.9 bits (92), Expect = 0.002
 Identities = 35/112 (31%), Positives = 46/112 (41%), Gaps = 6/112 (5%)

Query: 171 KDDAPPAAGASAP--APPPPKVAAAPP----PPPPKAAPAPSPTPVPSQKTSGGTRVYAS 224
           K  A PA  A+ P  A   P  AAA P     PP KAA  P+    P  K +      A+
Sbjct: 224 KAAAAPAKAAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAA 283

Query: 225 PLAKRLAAEKGLDLSSIGAGSGLFGSITSADLSKASKAGAVAAPSKSAKPTA 276
           P AK  A       +   A +    +  +   + A  A A A P+K+A P A
Sbjct: 284 PPAKAAAPPAKAAAAPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAATPPA 335

Length = 357

>gnl|CDD|113398 pfam04625, DEC-1_N, DEC-1 protein, N-terminal region

 Score = 40.2 bits (93), Expect = 0.002
 Identities = 15/38 (39%), Positives = 17/38 (44%)

Query: 175 PPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPS 212
           P   GA+AP P P    AA PP  P  A      P+P 
Sbjct: 100 PGLLGAAAPVPAPAPAPAAAPPAAPAPAADTPAAPIPD 137

The defective chorion-1 gene (dec-1) in Drosophila encodes follicle cell proteins necessary for proper eggshell assembly. Multiple products of the dec-1 gene are formed by alternative RNA splicing and proteolytic processing. Cleavage products include S80 (80 kDa) which is incorporated into the eggshell, and further proteolysis of S80 gives S60 (60 kDa). Length = 407

>gnl|CDD|235826 PRK06549, PRK06549, acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

 Score = 38.3 bits (89), Expect = 0.002
 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 1/48 (2%)

Query: 179 GASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRVYASPL 226
           GA A A  P + A+ P P P +A+P       P    + G     SP+
Sbjct: 22  GAPAQAAAPAQPASTPVPVPTEASPQVEAQA-PQPAAAAGADAMPSPM 68

Length = 130

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.2 bits (94), Expect = 0.002
 Identities = 16/70 (22%), Positives = 26/70 (37%)

Query: 174 APPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRVYASPLAKRLAAE 233
             P    + P P PP+  A P P  P++AP  +   +P  +    T        ++    
Sbjct: 400 KEPVRETATPPPVPPRPVAPPVPHTPESAPKLTRAAIPVDEKPKYTPPAPPKEEEKALIA 459

Query: 234 KGLDLSSIGA 243
            G  L  + A
Sbjct: 460 DGDVLEQLEA 469

Length = 585

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 39.8 bits (93), Expect = 0.002
 Identities = 16/58 (27%), Positives = 18/58 (31%)

Query: 175 PPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRVYASPLAKRLAA 232
            P A A+A  PP   V     PPP    P   P P   +     TR       K    
Sbjct: 388 RPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPHTPESAPKLTRAAIPVDEKPKYT 445

Length = 585

>gnl|CDD|215533 PLN02983, PLN02983, biotin carboxyl carrier protein of acetyl-CoA carboxylase

 Score = 39.4 bits (92), Expect = 0.002
 Identities = 14/42 (33%), Positives = 16/42 (38%)

Query: 175 PPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTS 216
           PP   A  PA PP    A   P         SP P  + K+S
Sbjct: 155 PPPPHAMPPASPPAAQPAPSAPASSPPPTPASPPPAKAPKSS 196

Length = 274

>gnl|CDD|215533 PLN02983, PLN02983, biotin carboxyl carrier protein of acetyl-CoA carboxylase

 Score = 38.7 bits (90), Expect = 0.003
 Identities = 14/39 (35%), Positives = 18/39 (46%)

Query: 174 APPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPS 212
            PPA       PPP  +  A PP    A  AP+ +P P+
Sbjct: 145 PPPAPVVMMQPPPPHAMPPASPPAAQPAPSAPASSPPPT 183

Length = 274

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 39.8 bits (93), Expect = 0.003
 Identities = 14/42 (33%), Positives = 19/42 (45%)

Query: 175 PPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTS 216
           P AA A++P+P     AA P  P     PA +P  V     +
Sbjct: 392 PSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSVDPPA 433

Length = 614

>gnl|CDD|223029 PHA03264, PHA03264, envelope glycoprotein D; Provisional

 Score = 39.2 bits (91), Expect = 0.003
 Identities = 16/61 (26%), Positives = 19/61 (31%)

Query: 175 PPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRVYASPLAKRLAAEK 234
           PP    S    PPP  +   P PP    P   P P P +  + G            A   
Sbjct: 255 PPYFEESKGYEPPPAPSGGSPAPPGDDRPEAKPEPGPVEDGAPGRETGGEGEGPEPAGRD 314

Query: 235 G 235
           G
Sbjct: 315 G 315

Length = 416

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 39.4 bits (92), Expect = 0.003
 Identities = 20/113 (17%), Positives = 30/113 (26%), Gaps = 14/113 (12%)

Query: 164 VAAFKDFKDDAPPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRVYA 223
                           A A   P    AAA        AP  +P P  +           
Sbjct: 390 AVGASAVPAVTAVTGAAGAALAPK---AAAAAAATRAEAPPAAPAPPATADRGDDAADGD 446

Query: 224 SPLAKRLAAEKGLDLSSIGAGSGLFGSITSADLSKASKAGAVAAPSKSAKPTA 276
           +P+  +  A    D                 D    + +G+ +AP+  A P A
Sbjct: 447 APVPAKANARASADSRCD-----------ERDAQPPADSGSASAPASDAPPDA 488

Length = 830

>gnl|CDD|222828 PHA01732, PHA01732, proline-rich protein

 Score = 36.3 bits (83), Expect = 0.003
 Identities = 25/75 (33%), Positives = 30/75 (40%)

Query: 184 APPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRVYASPLAKRLAAEKGLDLSSIGA 243
            P P   A  PPPPP   AP P PT  P    +   R   S   ++     G     I  
Sbjct: 12  PPAPLPPAPVPPPPPAPPAPVPEPTVKPVNAEAPKIREAQSKRGQKQQKAGGTASLRIPK 71

Query: 244 GSGLFGSITSADLSK 258
            SG  GSI++   SK
Sbjct: 72  QSGTQGSISAGGTSK 86

Length = 94

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 39.3 bits (92), Expect = 0.003
 Identities = 20/44 (45%), Positives = 21/44 (47%), Gaps = 5/44 (11%)

Query: 175 PPAAGASAPAPP--PPKVAAAPPPPPPKAAPA---PSPTPVPSQ 213
             A GA  PA P  PP  AA P PP   A PA   P+P P P  
Sbjct: 386 SAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPAPAPPA 429

Length = 576

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 38.9 bits (91), Expect = 0.004
 Identities = 15/47 (31%), Positives = 17/47 (36%)

Query: 172 DDAPPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGG 218
             APPA  A      P +VA  P       APA +P       T  G
Sbjct: 448 APAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTEEG 494

Length = 618

>gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional

 Score = 39.1 bits (91), Expect = 0.004
 Identities = 13/50 (26%), Positives = 17/50 (34%), Gaps = 1/50 (2%)

Query: 172 DDAPPAAGASAPAP-PPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTR 220
           +   PA    +PA  P P   A    P  KAA   +  P   +      R
Sbjct: 13  EAEQPAPAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKKDKPR 62

Length = 475

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	426
KOG0557|consensus	470		100.0
PLN02744	539	dihydrolipoyllysine-residue acetyltransferase comp	100.0
PRK05704	407	dihydrolipoamide succinyltransferase; Validated	100.0
TIGR01347	403	sucB 2-oxoglutarate dehydrogenase complex dihydrol	100.0
TIGR02927	590	SucB_Actino 2-oxoglutarate dehydrogenase, E2 compo	100.0
TIGR01349	435	PDHac_trf_mito pyruvate dehydrogenase complex dihy	100.0
COG0508	404	AceF Pyruvate/2-oxoglutarate dehydrogenase complex	100.0
TIGR01348	546	PDHac_trf_long pyruvate dehydrogenase complex dihy	100.0
PLN02528	416	2-oxoisovalerate dehydrogenase E2 component	100.0
PRK11854	633	aceF pyruvate dehydrogenase dihydrolipoyltransacet	100.0
PRK11855	547	dihydrolipoamide acetyltransferase; Reviewed	100.0
PRK11856	411	branched-chain alpha-keto acid dehydrogenase subun	100.0
PLN02226	463	2-oxoglutarate dehydrogenase E2 component	100.0
PTZ00144	418	dihydrolipoamide succinyltransferase; Provisional	100.0
KOG0558|consensus	474		100.0
KOG0559|consensus	457		100.0
PRK14843	347	dihydrolipoamide acetyltransferase; Provisional	100.0
PRK11857	306	dihydrolipoamide acetyltransferase; Reviewed	100.0
PF00198	231	2-oxoacid_dh: 2-oxoacid dehydrogenases acyltransfe	99.96
PRK12270	1228	kgd alpha-ketoglutarate decarboxylase; Reviewed	99.92
PF00364	74	Biotin_lipoyl: Biotin-requiring enzyme; InterPro:	99.61
PRK14843	347	dihydrolipoamide acetyltransferase; Provisional	99.59
PRK14875	371	acetoin dehydrogenase E2 subunit dihydrolipoyllysi	99.58
TIGR02927	590	SucB_Actino 2-oxoglutarate dehydrogenase, E2 compo	99.55
PRK11857	306	dihydrolipoamide acetyltransferase; Reviewed	99.55
PLN02226	463	2-oxoglutarate dehydrogenase E2 component	99.55
PRK06748	83	hypothetical protein; Validated	99.54
KOG0559|consensus	457		99.53
PF00198	231	2-oxoacid_dh: 2-oxoacid dehydrogenases acyltransfe	99.53
PTZ00144	418	dihydrolipoamide succinyltransferase; Provisional	99.51
TIGR01347	403	sucB 2-oxoglutarate dehydrogenase complex dihydrol	99.5
PRK05704	407	dihydrolipoamide succinyltransferase; Validated	99.5
PLN02528	416	2-oxoisovalerate dehydrogenase E2 component	99.5
TIGR01349	435	PDHac_trf_mito pyruvate dehydrogenase complex dihy	99.48
PLN02744	539	dihydrolipoyllysine-residue acetyltransferase comp	99.47
TIGR01348	546	PDHac_trf_long pyruvate dehydrogenase complex dihy	99.46
COG0511	140	AccB Biotin carboxyl carrier protein [Lipid metabo	99.4
PRK11892	464	pyruvate dehydrogenase subunit beta; Provisional	99.37
PRK05889	71	putative acetyl-CoA carboxylase biotin carboxyl ca	99.36
KOG0558|consensus	474		99.32
PF02817	39	E3_binding: e3 binding domain; InterPro: IPR004167	99.31
COG0508	404	AceF Pyruvate/2-oxoglutarate dehydrogenase complex	99.31
PRK08225	70	acetyl-CoA carboxylase biotin carboxyl carrier pro	99.24
cd06663	73	Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains ar	99.24
PRK11854	633	aceF pyruvate dehydrogenase dihydrolipoyltransacet	99.19
PRK12270	1228	kgd alpha-ketoglutarate decarboxylase; Reviewed	99.18
PRK06549	130	acetyl-CoA carboxylase biotin carboxyl carrier pro	99.15
PRK05641	153	putative acetyl-CoA carboxylase biotin carboxyl ca	99.08
TIGR00531	156	BCCP acetyl-CoA carboxylase, biotin carboxyl carri	99.07
KOG0557|consensus	470		99.07
PRK06302	155	acetyl-CoA carboxylase biotin carboxyl carrier pro	99.05
PRK11856	411	branched-chain alpha-keto acid dehydrogenase subun	99.04
PRK07051	80	hypothetical protein; Validated	99.03
PLN02983	274	biotin carboxyl carrier protein of acetyl-CoA carb	99.02
PRK14042	596	pyruvate carboxylase subunit B; Provisional	98.96
PRK11855	547	dihydrolipoamide acetyltransferase; Reviewed	98.95
cd06850	67	biotinyl_domain The biotinyl-domain or biotin carb	98.94
COG4770	645	Acetyl/propionyl-CoA carboxylase, alpha subunit [L	98.91
TIGR02712	1201	urea_carbox urea carboxylase. Members of this fami	98.78
TIGR01108	582	oadA oxaloacetate decarboxylase alpha subunit. Thi	98.75
PRK14040	593	oxaloacetate decarboxylase; Provisional	98.71
TIGR01235	1143	pyruv_carbox pyruvate carboxylase. This enzyme pla	98.68
cd06849	74	lipoyl_domain Lipoyl domain of the dihydrolipoyl a	98.67
PRK09282	592	pyruvate carboxylase subunit B; Validated	98.59
PRK12999	1146	pyruvate carboxylase; Reviewed	98.55
COG1038	1149	PycA Pyruvate carboxylase [Energy production and c	98.39
KOG0369|consensus	1176		98.06
KOG0238|consensus	670		97.99
cd06848	96	GCS_H Glycine cleavage H-protein. Glycine cleavage	97.76
KOG0368|consensus	2196		97.54
TIGR03077	110	not_gcvH glycine cleavage protein H-like protein,	97.46
PRK00624	114	glycine cleavage system protein H; Provisional	97.26
PF13533	50	Biotin_lipoyl_2: Biotin-lipoyl like	97.25
PRK01202	127	glycine cleavage system protein H; Provisional	97.12
PRK13380	144	glycine cleavage system protein H; Provisional	96.99
TIGR00998	334	8a0101 efflux pump membrane protein (multidrug res	96.85
PRK09783	409	copper/silver efflux system membrane fusion protei	96.8
TIGR01730	322	RND_mfp RND family efflux transporter, MFP subunit	96.75
TIGR00527	127	gcvH glycine cleavage system H protein. The genome	96.72
PRK10559	310	p-hydroxybenzoic acid efflux subunit AaeA; Provisi	96.58
PRK10476	346	multidrug resistance protein MdtN; Provisional	96.53
PRK05889	71	putative acetyl-CoA carboxylase biotin carboxyl ca	96.47
PRK03598	331	putative efflux pump membrane fusion protein; Prov	96.24
PRK15136	390	multidrug efflux system protein EmrA; Provisional	96.11
PRK09578	385	periplasmic multidrug efflux lipoprotein precursor	96.04
PRK06748	83	hypothetical protein; Validated	95.9
PF01597	122	GCV_H: Glycine cleavage H-protein; InterPro: IPR00	95.53
PRK09859	385	multidrug efflux system protein MdtE; Provisional	95.36
PRK12784	84	hypothetical protein; Provisional	95.35
PRK15030	397	multidrug efflux system transporter AcrA; Provisio	95.3
cd06850	67	biotinyl_domain The biotinyl-domain or biotin carb	95.25
PRK08225	70	acetyl-CoA carboxylase biotin carboxyl carrier pro	95.19
COG0509	131	GcvH Glycine cleavage system H protein (lipoate-bi	95.13
PRK11578	370	macrolide transporter subunit MacA; Provisional	95.09
COG0511	140	AccB Biotin carboxyl carrier protein [Lipid metabo	95.07
PRK11556	415	multidrug efflux system subunit MdtA; Provisional	94.68
PF13437	105	HlyD_3: HlyD family secretion protein	94.42
TIGR03309	256	matur_yqeB selenium-dependent molybdenum hydroxyla	94.36
PRK06549	130	acetyl-CoA carboxylase biotin carboxyl carrier pro	94.03
TIGR02971	327	heterocyst_DevB ABC exporter membrane fusion prote	93.93
PF00302	206	CAT: Chloramphenicol acetyltransferase; InterPro:	93.66
PF13375	101	RnfC_N: RnfC Barrel sandwich hybrid domain	93.56
PF12700	328	HlyD_2: HlyD family secretion protein; PDB: 3LNN_B	93.55
PF13533	50	Biotin_lipoyl_2: Biotin-lipoyl like	93.5
PF00364	74	Biotin_lipoyl: Biotin-requiring enzyme; InterPro:	93.43
PRK05641	153	putative acetyl-CoA carboxylase biotin carboxyl ca	92.85
PF00529	305	HlyD: HlyD family secretion protein the correspond	92.71
PRK07051	80	hypothetical protein; Validated	92.37
cd06250	359	M14_PaAOTO_like An uncharacterized subgroup of the	92.1
TIGR00998	334	8a0101 efflux pump membrane protein (multidrug res	91.95
cd06253	298	M14_ASTE_ASPA_like_3 A functionally uncharacterize	91.7
PRK10476	346	multidrug resistance protein MdtN; Provisional	90.44
COG3608	331	Predicted deacylase [General function prediction o	90.44
TIGR02971	327	heterocyst_DevB ABC exporter membrane fusion prote	90.29
COG4845	219	Chloramphenicol O-acetyltransferase [Defense mecha	90.22
cd06251	287	M14_ASTE_ASPA_like_1 A functionally uncharacterize	90.17
TIGR02994	325	ectoine_eutE ectoine utilization protein EutE. Mem	90.13
cd06252	316	M14_ASTE_ASPA_like_2 A functionally uncharacterize	89.93
TIGR01730	322	RND_mfp RND family efflux transporter, MFP subunit	89.7
PRK10559	310	p-hydroxybenzoic acid efflux subunit AaeA; Provisi	89.18
PRK15136	390	multidrug efflux system protein EmrA; Provisional	89.16
PRK03598	331	putative efflux pump membrane fusion protein; Prov	88.44
PRK13757	219	chloramphenicol acetyltransferase; Provisional	87.62
TIGR00999	265	8a0102 Membrane Fusion Protein cluster 2 (function	87.33
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	87.3
TIGR03794	421	NHPM_micro_HlyD NHPM bacteriocin system secretion	87.01
TIGR01000	457	bacteriocin_acc bacteriocin secretion accessory pr	86.99
PF12700	328	HlyD_2: HlyD family secretion protein; PDB: 3LNN_B	86.78
PRK11578	370	macrolide transporter subunit MacA; Provisional	86.68
TIGR00531	156	BCCP acetyl-CoA carboxylase, biotin carboxyl carri	86.17
PRK09859	385	multidrug efflux system protein MdtE; Provisional	86.15
PLN02983	274	biotin carboxyl carrier protein of acetyl-CoA carb	86.04
PRK11556	415	multidrug efflux system subunit MdtA; Provisional	86.0
PRK15030	397	multidrug efflux system transporter AcrA; Provisio	85.94
PRK14042	596	pyruvate carboxylase subunit B; Provisional	85.85
PRK09578	385	periplasmic multidrug efflux lipoprotein precursor	85.73
cd06254	288	M14_ASTE_ASPA_like_4 A functionally uncharacterize	85.71
TIGR01235	1143	pyruv_carbox pyruvate carboxylase. This enzyme pla	85.21
PF05896	257	NQRA: Na(+)-translocating NADH-quinone reductase s	84.62
TIGR01108	582	oadA oxaloacetate decarboxylase alpha subunit. Thi	83.44
PRK06302	155	acetyl-CoA carboxylase biotin carboxyl carrier pro	83.43
PRK09783	409	copper/silver efflux system membrane fusion protei	83.38
COG4770	645	Acetyl/propionyl-CoA carboxylase, alpha subunit [L	81.82
PRK14040	593	oxaloacetate decarboxylase; Provisional	81.77
TIGR03794	421	NHPM_micro_HlyD NHPM bacteriocin system secretion	80.84
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	80.51
COG1566	352	EmrA Multidrug resistance efflux pump [Defense mec	80.4

>KOG0557|consensus

Probab=100.00  E-value=5.5e-60  Score=476.06  Aligned_cols=319  Identities=55%  Similarity=0.820  Sum_probs=254.7

Q ss_pred             cccCceEeccCCCCCcccceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEE
Q psy16142         79 REGNDRVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIV  158 (426)
Q Consensus        79 v~~~~~i~mP~lg~s~d~g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~  158 (426)
                      ...+..|.||.|+.+|++|.|++|.+++||.++.||+||||||||++|+++++++|+|++|++++|.+.|+||++||+|.
T Consensus        35 ~p~h~~i~MPALSPTMeeGnIvsW~kKeGdkls~GDvl~EVETDKAtmd~E~~ddGyLAKILi~EGskdvpVGk~Iaiiv  114 (470)
T KOG0557|consen   35 LPAHKTFSMPALSPTMEEGNIVSWKKKEGDKLSAGDVLLEVETDKATMDVEAQDDGYLAKILIEEGSKDVPVGKPIAIIV  114 (470)
T ss_pred             CCcceEeecCCCCccccCCceeeEeeccCCccCCCceEEEEecccceeeeeeccCCeeeeeeeccCcccccCCCceEEEe
Confidence            45678899999999999999999999999999999999999999999999999999999999999966899999999999


Q ss_pred             cCCcchhcccCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCccccChHHHHHHHHcC
Q psy16142        159 ENESDVAAFKDFKDDAP--PAAGASAPAPPPPKVAAAPPPPP-PKAAPAPSPTPVPSQKTSGGTRVYASPLAKRLAAEKG  235 (426)
Q Consensus       159 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~g  235 (426)
                      +.++++..+..+.++..  ...+..  +++++++....++.| +.+.+..    ..+..+...+++.+||++|+||.|+|
T Consensus       115 e~e~di~~~k~~k~~~s~~~~~~~~--~~~~app~~~~~~~Ps~~~~~~~----~~p~~~~~~~r~~asP~Ak~la~e~~  188 (470)
T KOG0557|consen  115 EDEDDIAAFKLPKDEASSGEQSPSA--APPPAPPKVAKPEAPSAPSKPST----SQPVKAKNGGRVFASPLAKKLAEEKG  188 (470)
T ss_pred             cccccHHHhhccccccccccCCccc--CCCCCCCcccccCCCCCCccccc----cccCCcCCCCceecChHHHHHHHHhC
Confidence            99988877754433210  000111  111111111111100 0000100    00111112458899999999999999


Q ss_pred             CCCcCccCCCCCCCcccchhhhhhhhcCC---CCCC---CCCC---C-CCCCCCceeecCCchhhHHHHHHHhhHHH---
Q psy16142        236 LDLSSIGAGSGLFGSITSADLSKASKAGA---VAAP---SKSA---K-PTANGPFTDLPVSGVRGVIAKRLLQSKQV---  302 (426)
Q Consensus       236 IDl~~v~~gtG~~GrI~~~DV~~~~~~~~---~~~~---~~~~---~-~~~~~~~~~~~ls~~Rk~iA~~m~~S~~~---  302 (426)
                      +|++.| .||||+|||++.||+++.+...   ...+   ..+.   + +...+.++++|++.||+.|++||.+|++.   
T Consensus       189 l~ls~i-~gtGP~Gri~k~Di~~~v~~~~~k~~~~~~~~~~~~~~~a~~~~~~~~~diP~s~mr~viakrl~eSk~~IPh  267 (470)
T KOG0557|consen  189 LELSSI-PGTGPHGRILKGDIEKHVGSGKKKSAKAPKASAPPPAPAAPPVSLPGYEDIPVSNMRRVIAKRLLESKQTIPH  267 (470)
T ss_pred             CccccC-cCcCCCceeehhhHHHhhcccccccccCCCccCCCcCccCCcCCCCcccccccchhhhhhhhhhhhhhcCCCe
Confidence            999999 9999999999999999754211   0000   0000   1 12234489999999999999999999877   


Q ss_pred             ------------HHHHHHHHHHHHHhCCcccHHHHHHHHHHHHhhhcccccceeeC-CceEEcCCCcEEEEeecCCceEe
Q psy16142        303 ------------IKLREQMNKALEKRGAKLSINDFIIKATALASRRVPEANSSWQD-TFIREYHSVDVSVAVNTDKGLFT  369 (426)
Q Consensus       303 ------------~~lr~~~~~~~~~~~~~~s~~~~~~ka~~~al~~~p~~n~~~~~-~~i~~~~~v~i~iAv~~~~GL~~  369 (426)
                                  +++|+++|  +++.+.++|++|||+||++.||+++|++|++|.+ ..|+++++|||++||+|++||++
T Consensus       268 ~yvt~~~~~d~ll~~r~~ln--~~~~~~~vsvndliiKAaa~al~~vPevNs~w~~~~~i~~~~~VdisvAVat~~GLit  345 (470)
T KOG0557|consen  268 YYVTVDVNLDKLLALREKLN--FEKSIKKVSLNDLIAKAAALALAKVPEVNSSWMDELVIRQLSSVDISVAVATPNGLIT  345 (470)
T ss_pred             EEEeeeeehHHHHHHHHHhh--hcccCcccchhHHHHHHHHHHHhcCCcccceecCCccccccCcCChhheeeccCcccc
Confidence                        78888888  5667889999999999999999999999999988 79999999999999999999999


Q ss_pred             ecccCcCCCCHHHHHhccccccccccCcCCccchHHHHHHHHHHHcCCCCcccccC
Q psy16142        370 PIVFDADKKGLVDISNDSRSLISFRRPVKFSEESNDVKTLAAKAKEGKLQPHEFQV  425 (426)
Q Consensus       370 pvi~~a~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~l~~~e~~~  425 (426)
                      |+|+|++.++|.+|++                   ++++|+.|||+|||+||||||
T Consensus       346 Pii~na~~kgl~~is~-------------------~vkel~~kAr~~kL~Pee~qg  382 (470)
T KOG0557|consen  346 PIIQNADAKGLSTISS-------------------KVKELAQKAREGKLQPEEFQG  382 (470)
T ss_pred             hhhhhcccccHHHHHH-------------------HHHHHHHHHhhccCCcccccC
Confidence            9999999999999999                   999999999999999999998

>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex

Probab=100.00  E-value=2.7e-58  Score=483.46  Aligned_cols=326  Identities=44%  Similarity=0.751  Sum_probs=243.9

Q ss_pred             ccccCceEeccCCCCCcccceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEE
Q psy16142         78 VREGNDRVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCII  157 (426)
Q Consensus        78 ~v~~~~~i~mP~lg~s~d~g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i  157 (426)
                      +++.+..+.||.+|.+|+++++.+|++++||.|++||.|++|||||+++|++|+.+|+|.+|++++|++.|++|++|+++
T Consensus       108 ~~~~~~ei~mP~lg~~m~eg~I~~W~vkeGD~V~~g~~l~eVETDKa~~evea~~~G~l~ki~~~eG~~~v~vG~~ia~i  187 (539)
T PLN02744        108 DLPPHQEIGMPSLSPTMTEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGAKEIKVGEVIAIT  187 (539)
T ss_pred             cCCCCceEeCCCCCCCcceeEEEEEEecCCCEecCCCeeEEEeeccceeEecCCCCcEEEEEEecCCCcccCCCCEEEEE
Confidence            45667899999999999999999999999999999999999999999999999999999999999995259999999999


Q ss_pred             EcCCcchhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccChHHHHHHHHcCCC
Q psy16142        158 VENESDVAAFKDFKDDAPPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRVYASPLAKRLAAEKGLD  237 (426)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gID  237 (426)
                      .+++++.+.+.............+++.+.+..+ .......+...+... .+.+........++++||+||+||+|+|||
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~ASP~aRrLAre~GVD  265 (539)
T PLN02744        188 VEEEEDIGKFKDYKPSSSAAPAAPKAKPSPPPP-KEEEVEKPASSPEPK-ASKPSAPPSSGDRIFASPLARKLAEDNNVP  265 (539)
T ss_pred             ccCccccccccccccccccccccccccCCCCCc-ccccccCCCCCcccc-cccccccccccccccCCchhHHHHHHcCCC
Confidence            654433211110000000000000000000000 000000000000000 000000011123567999999999999999


Q ss_pred             CcCccCCCCCCCcccchhhhhhhhcCC-CCC-CCCCCCCCCCCCceeecCCchhhHHHHHHHhhHHH-------------
Q psy16142        238 LSSIGAGSGLFGSITSADLSKASKAGA-VAA-PSKSAKPTANGPFTDLPVSGVRGVIAKRLLQSKQV-------------  302 (426)
Q Consensus       238 l~~v~~gtG~~GrI~~~DV~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~ls~~Rk~iA~~m~~S~~~-------------  302 (426)
                      |+.| +|||++|||+++||++|..... ..+ +.+.....+...++++||++|||.||++|++||++             
T Consensus       266 Ls~V-~GTGp~GRI~k~DV~a~~~~~~~~~~~~~~~~~~~~~~~~~~vpls~~Rk~IA~~m~~S~~~iPh~t~~~evdvt  344 (539)
T PLN02744        266 LSSI-KGTGPDGRIVKADIEDYLASGGKGATAPPSTDSKAPALDYTDIPNTQIRKVTASRLLQSKQTIPHYYLTVDTRVD  344 (539)
T ss_pred             HHHC-CCCCCCCcccHHHHHHHhhccccccCCCCCcccCCCCCccccccchhHHHHHHHHHHHHHhhCCeEEEEEEEEcH
Confidence            9999 9999999999999999753211 110 00000001111245689999999999999999987             


Q ss_pred             --HHHHHHHHHHHHH-hCCcccHHHHHHHHHHHHhhhcccccceeeCCceEEcCCCcEEEEeecCCceEeecccCcCCCC
Q psy16142        303 --IKLREQMNKALEK-RGAKLSINDFIIKATALASRRVPEANSSWQDTFIREYHSVDVSVAVNTDKGLFTPIVFDADKKG  379 (426)
Q Consensus       303 --~~lr~~~~~~~~~-~~~~~s~~~~~~ka~~~al~~~p~~n~~~~~~~i~~~~~v~i~iAv~~~~GL~~pvi~~a~~~~  379 (426)
                        +++|+++++..+. .|.|+|+++||+||++.||++||.+|++|+++.|+++++|||||||++++||+||||+|+|+||
T Consensus       345 ~L~~lR~~l~~~~~~~~g~kls~~~~liKA~a~AL~~~P~lNa~~~~~~i~~~~~vnIgvAV~t~~GL~vPVIr~ad~~s  424 (539)
T PLN02744        345 KLMALRSQLNSLQEASGGKKISVNDLVIKAAALALRKVPQCNSSWTDDYIRQYHNVNINVAVQTENGLYVPVVKDADKKG  424 (539)
T ss_pred             HHHHHHHHHHHHhhhcccCccCHHHHHHHHHHHHHHhCcHhheeeccCcEEEeCCcceEEEEECCCCeEECcCCCcccCC
Confidence              8899999876654 4899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhccccccccccCcCCccchHHHHHHHHHHHcCCCCcccccC
Q psy16142        380 LVDISNDSRSLISFRRPVKFSEESNDVKTLAAKAKEGKLQPHEFQV  425 (426)
Q Consensus       380 l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~l~~~e~~~  425 (426)
                      |.||++                   ++++|++|||+|+|+++||+|
T Consensus       425 l~eIa~-------------------ei~~L~~kAr~~kL~~~dl~G  451 (539)
T PLN02744        425 LSTIAE-------------------EVKQLAQKARENSLKPEDYEG  451 (539)
T ss_pred             HHHHHH-------------------HHHHHHHHHHcCCCChhhcCC
Confidence            999999                   999999999999999999998

>PRK05704 dihydrolipoamide succinyltransferase; Validated

Probab=100.00  E-value=2.3e-58  Score=473.69  Aligned_cols=295  Identities=35%  Similarity=0.542  Sum_probs=237.4

Q ss_pred             ceEeccCCCCCcccceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEcCCc
Q psy16142         83 DRVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENES  162 (426)
Q Consensus        83 ~~i~mP~lg~s~d~g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~~  162 (426)
                      ..+.||.+|.++++|++.+|++++||.|++||.||+|||||++++|+||++|+|.++++++|+ .|++|++|++|+..++
T Consensus         3 ~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~Gd~l~~vEtdK~~~ei~a~~~G~v~~i~v~~G~-~V~~G~~l~~i~~~~~   81 (407)
T PRK05704          3 VEIKVPTLPESVTEATIATWHKKPGDAVKRDEVLVEIETDKVVLEVPAPAAGVLSEILAEEGD-TVTVGQVLGRIDEGAA   81 (407)
T ss_pred             eeEecCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEecCceeEEecCCCEEEEEEEeCCCC-EeCCCCEEEEEecCCc
Confidence            368999999999999999999999999999999999999999999999999999999999999 8999999999976543


Q ss_pred             chhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccChHHHHHHHHcCCCCcCcc
Q psy16142        163 DVAAFKDFKDDAPPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRVYASPLAKRLAAEKGLDLSSIG  242 (426)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gIDl~~v~  242 (426)
                      +....       +  .+..  .+ + +.  +.+.   . .+.     .+.   .......+||+||+||+|+||||++| 
T Consensus        82 ~~~~~-------~--~~~~--~~-~-~~--~~~~---~-~~~-----~~~---~~~~~~~asP~aR~lA~e~gidl~~v-  133 (407)
T PRK05704         82 AGAAA-------A--AAAA--AA-A-AA--AAPA---Q-AQA-----AAA---AEQSNDALSPAARKLAAENGLDASAV-  133 (407)
T ss_pred             ccccC-------C--CCCC--CC-C-CC--CCCC---C-CCC-----Ccc---CCCccccCCchhhhHHhhcCCChhhC-
Confidence            21100       0  0000  00 0 00  0000   0 000     000   00123568999999999999999999 


Q ss_pred             CCCCCCCcccchhhhhhhhcCC-CCC-CCC-C--CCCC--CCCCceeecCCchhhHHHHHHHhhHHH-------------
Q psy16142        243 AGSGLFGSITSADLSKASKAGA-VAA-PSK-S--AKPT--ANGPFTDLPVSGVRGVIAKRLLQSKQV-------------  302 (426)
Q Consensus       243 ~gtG~~GrI~~~DV~~~~~~~~-~~~-~~~-~--~~~~--~~~~~~~~~ls~~Rk~iA~~m~~S~~~-------------  302 (426)
                      +|||++|||+++||++|..... ... ++. .  ..+.  .....+.+||++|||+||++|++||++             
T Consensus       134 ~gtG~~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vpls~~rk~ia~~m~~S~~~iPh~~~~~evd~~  213 (407)
T PRK05704        134 KGTGKGGRVTKEDVLAALAAAAAAPAAPAAAAPAAAPAPLGARPEERVPMTRLRKTIAERLLEAQNTTAMLTTFNEVDMT  213 (407)
T ss_pred             CCCCCCCcccHHHHHHHhhcccccCCCCCCCCCcCCCccccCCcceEeeChHHHHHHHHHHHHHhhcCCeEEEEEEEeHH
Confidence            9999999999999999742211 000 000 0  0000  011235689999999999999999987             


Q ss_pred             --HHHHHHHHHHHHH-hCCcccHHHHHHHHHHHHhhhcccccceeeCCceEEcCCCcEEEEeecCCceEeecccCcCCCC
Q psy16142        303 --IKLREQMNKALEK-RGAKLSINDFIIKATALASRRVPEANSSWQDTFIREYHSVDVSVAVNTDKGLFTPIVFDADKKG  379 (426)
Q Consensus       303 --~~lr~~~~~~~~~-~~~~~s~~~~~~ka~~~al~~~p~~n~~~~~~~i~~~~~v~i~iAv~~~~GL~~pvi~~a~~~~  379 (426)
                        +++|+++++.+.+ .|.|+|+++||+||++.||++||.+|++|+++.|++++++||||||++++||+||||+|+|+||
T Consensus       214 ~l~~~r~~~~~~~~~~~~~kls~~~~likA~a~AL~~~P~~Na~~~~~~i~~~~~~nIgiAv~~~~GLivPVI~~a~~~s  293 (407)
T PRK05704        214 PVMDLRKQYKDAFEKKHGVKLGFMSFFVKAVVEALKRYPEVNASIDGDDIVYHNYYDIGIAVGTPRGLVVPVLRDADQLS  293 (407)
T ss_pred             HHHHHHHHHHhhhHhhcCCCcCHHHHHHHHHHHHHHhCcHhhcEEcCCeEEEcCCCCeEEEEECCCceEeCcCCCcccCC
Confidence              7889999876544 4899999999999999999999999999999899999999999999999999999999999999


Q ss_pred             HHHHHhccccccccccCcCCccchHHHHHHHHHHHcCCCCcccccC
Q psy16142        380 LVDISNDSRSLISFRRPVKFSEESNDVKTLAAKAKEGKLQPHEFQV  425 (426)
Q Consensus       380 l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~l~~~e~~~  425 (426)
                      |.||++                   ++++|++|||+|+|+++||+|
T Consensus       294 l~eIa~-------------------~~~~l~~~ar~g~L~~~d~~g  320 (407)
T PRK05704        294 FAEIEK-------------------KIAELAKKARDGKLSIEELTG  320 (407)
T ss_pred             HHHHHH-------------------HHHHHHHHHHcCCCChHHcCC
Confidence            999999                   999999999999999999998

>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component)

Probab=100.00  E-value=8.2e-58  Score=468.80  Aligned_cols=294  Identities=33%  Similarity=0.558  Sum_probs=237.2

Q ss_pred             eEeccCCCCCcccceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEcCCcc
Q psy16142         84 RVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENESD  163 (426)
Q Consensus        84 ~i~mP~lg~s~d~g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~~~  163 (426)
                      .++||.+|.++++|++.+|++++||.|+.||.|++|||||+++||+||++|+|.++++++|+ .|++|++|++|+.+++.
T Consensus         2 ~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdK~~~ei~a~~~G~v~~i~~~eG~-~v~vG~~l~~i~~~~~~   80 (403)
T TIGR01347         2 EIKVPELAESITEGTVAEWHKKVGDTVKRDENIVEIETDKVVLEVPSPADGVLQEILFKEGD-TVESGQVLAILEEGNDA   80 (403)
T ss_pred             eEecCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEEcceeeEEecCCCEEEEEEEeCCCC-EeCCCCEEEEEecCCCC
Confidence            57899999999999999999999999999999999999999999999999999999999999 89999999999754321


Q ss_pred             hhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccChHHHHHHHHcCCCCcCccC
Q psy16142        164 VAAFKDFKDDAPPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRVYASPLAKRLAAEKGLDLSSIGA  243 (426)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gIDl~~v~~  243 (426)
                       ..   .    .+ ++..  .+.+.+.  +.+     ..+      .+.   ...+++.+||+||+||+|+||||+.| .
T Consensus        81 -~~---~----~~-~~~~--~~~~~~~--~~~-----~~~------~~~---~~~~~~~asP~aR~lA~e~gvdl~~v-~  132 (403)
T TIGR01347        81 -TA---A----PP-AKSG--EEKEETP--AAS-----AAA------APT---AAANRPSLSPAARRLAKEHGIDLSAV-P  132 (403)
T ss_pred             -cc---c----cc-cccc--CCCCCCC--CCC-----CCC------CCc---CccccccCCchhhhHHHHcCCChhhC-C
Confidence             00   0    00 0000  0000000  000     000      000   11235679999999999999999999 9


Q ss_pred             CCCCCCcccchhhhhhhhcCC--CCCCCCC--CCCC-CCCCceeecCCchhhHHHHHHHhhHHH---------------H
Q psy16142        244 GSGLFGSITSADLSKASKAGA--VAAPSKS--AKPT-ANGPFTDLPVSGVRGVIAKRLLQSKQV---------------I  303 (426)
Q Consensus       244 gtG~~GrI~~~DV~~~~~~~~--~~~~~~~--~~~~-~~~~~~~~~ls~~Rk~iA~~m~~S~~~---------------~  303 (426)
                      |||++|||+++||+++.....  +......  ..+. .....+.+||++|||+||++|++||++               +
T Consensus       133 gtG~~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pls~~r~~ia~~m~~S~~~ip~~~~~~evd~t~l~  212 (403)
T TIGR01347       133 GTGVTGRVTKEDIIKKTEAPASAQAPAPAAAAKAPANFTRPEERVKMTRLRQRIAERLKEAQNSTAMLTTFNEVDMSAVM  212 (403)
T ss_pred             CCCCCCcccHHHHHHhhhcccccCCCCCCcccCCccccCCCceEeeCcHHHHHHHHHHHHHhccCCEEEEEEEEEHHHHH
Confidence            999999999999999743210  1100000  0000 111245689999999999999999977               7


Q ss_pred             HHHHHHHHHHHH-hCCcccHHHHHHHHHHHHhhhcccccceeeCCceEEcCCCcEEEEeecCCceEeecccCcCCCCHHH
Q psy16142        304 KLREQMNKALEK-RGAKLSINDFIIKATALASRRVPEANSSWQDTFIREYHSVDVSVAVNTDKGLFTPIVFDADKKGLVD  382 (426)
Q Consensus       304 ~lr~~~~~~~~~-~~~~~s~~~~~~ka~~~al~~~p~~n~~~~~~~i~~~~~v~i~iAv~~~~GL~~pvi~~a~~~~l~~  382 (426)
                      ++|+++++.+.+ .|.|+|+++||+||++.||++||.||++|+++.|++++++||||||++++||+||||||||+|||.+
T Consensus       213 ~~r~~~~~~~~~~~~~kls~~~~likA~a~AL~~~P~~Na~~~~~~i~~~~~vnIgvAv~~~~GL~vPVIr~ad~~sl~e  292 (403)
T TIGR01347       213 ELRKRYKEEFEKKHGVKLGFMSFFVKAVVAALKRFPEVNAEIDGDDIVYKDYYDISVAVSTDRGLVVPVVRNADRMSFAD  292 (403)
T ss_pred             HHHHHHHhhhHhhcCCCcCHHHHHHHHHHHHHHhCcHhheEEcCCEEEEcCCCCeEEEEECCCCeEECcCCCcccCCHHH
Confidence            899999876544 4899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhccccccccccCcCCccchHHHHHHHHHHHcCCCCcccccC
Q psy16142        383 ISNDSRSLISFRRPVKFSEESNDVKTLAAKAKEGKLQPHEFQV  425 (426)
Q Consensus       383 i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~l~~~e~~~  425 (426)
                      |++                   ++++|++|||+|+|+++||+|
T Consensus       293 Ia~-------------------~~~~l~~~ar~gkL~~~d~~g  316 (403)
T TIGR01347       293 IEK-------------------EIADLGKKARDGKLTLEDMTG  316 (403)
T ss_pred             HHH-------------------HHHHHHHHHHcCCCChhhcCC
Confidence            999                   999999999999999999998

dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.

>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase

Probab=100.00  E-value=1e-57  Score=488.40  Aligned_cols=322  Identities=29%  Similarity=0.461  Sum_probs=239.5

Q ss_pred             ceEeccCCCCCcccceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEcCCc
Q psy16142         83 DRVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENES  162 (426)
Q Consensus        83 ~~i~mP~lg~s~d~g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~~  162 (426)
                      ..+.||.+|.+|++|++.+|++++||.|++||.||+|||||++++|+||++|+|.+|++++|+ .|++|++|++|+.+++
T Consensus       136 ~~~~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdKa~~ev~s~~~G~v~~i~v~~G~-~v~vG~~l~~i~~~~~  214 (590)
T TIGR02927       136 TDIEMPELGESVTEGTITQWLKAVGDKIEVDEPILEVSTDKVDTEIPSPVAGTILEILAEEDD-TVDVGAEIAKIGDAGA  214 (590)
T ss_pred             eEEEcCCCCCCcceEEEEEEEeCCCCEecCCCEeEEEEecceeeEEcCCCCeEEEEEecCCCC-EecCCCEEEEEecCCC
Confidence            578999999999999999999999999999999999999999999999999999999999999 8999999999976543


Q ss_pred             chhcccCCCCCCCCCCCC-CCCCCCCCCCCCCCCCC-CCCCCCCCCC-CC-CCCCCCCCCCccccChHHHHHHHHcCCCC
Q psy16142        163 DVAAFKDFKDDAPPAAGA-SAPAPPPPKVAAAPPPP-PPKAAPAPSP-TP-VPSQKTSGGTRVYASPLAKRLAAEKGLDL  238 (426)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~p~~~~-~~-~~~~~~~~~~~~~asP~aR~lA~e~gIDl  238 (426)
                      +................. +...+.....+...... .+.+.+...+ .+ .+........++++||+||+||+|+||||
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gvdl  294 (590)
T TIGR02927       215 AAAEDAKAEEEAEAKAEAKPEEKPDPKKDEAAEPEPDEPEAEKAEKKEEKAAAAPAANSDGSPYVTPLVRKLAAEHGIDL  294 (590)
T ss_pred             ccccccccccccccccccccCCCCccccccccccccccccccccccccccccccccccccCcccCCchhHHHHHHcCCCH
Confidence            321100000000000000 00000000000000000 0000000000 00 00000011236789999999999999999


Q ss_pred             cCccCCCCCCCcccchhhhhhhhcCC---C--CC------CCC---C-CCCCC---CCCceeecCCchhhHHHHHHHhhH
Q psy16142        239 SSIGAGSGLFGSITSADLSKASKAGA---V--AA------PSK---S-AKPTA---NGPFTDLPVSGVRGVIAKRLLQSK  300 (426)
Q Consensus       239 ~~v~~gtG~~GrI~~~DV~~~~~~~~---~--~~------~~~---~-~~~~~---~~~~~~~~ls~~Rk~iA~~m~~S~  300 (426)
                      ++| .|||++|||+++||++|.....   .  ..      +..   . ..+..   ...++.+||++|||.||++|++||
T Consensus       295 ~~v-~GtG~~GrI~k~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pls~~rk~ia~~m~~S~  373 (590)
T TIGR02927       295 NSV-KGTGIGGRIRKQDVLAAAEGAKAAAEAPAAEAAAAAPAAAAAASASPAPAKAHLRGTTQKANRIREITAKKTREAL  373 (590)
T ss_pred             HHC-CCCCCCCeEeHHHHHHHHhccccccccccccccccCccccccccCCCccccccccCceeeccHHHHHHHHHHHHHh
Confidence            999 9999999999999999753210   0  00      000   0 00000   012457899999999999999999


Q ss_pred             HH---------------HHHHHHHHHHHHH-hCCcccHHHHHHHHHHHHhhhcccccceeeC--CceEEcCCCcEEEEee
Q psy16142        301 QV---------------IKLREQMNKALEK-RGAKLSINDFIIKATALASRRVPEANSSWQD--TFIREYHSVDVSVAVN  362 (426)
Q Consensus       301 ~~---------------~~lr~~~~~~~~~-~~~~~s~~~~~~ka~~~al~~~p~~n~~~~~--~~i~~~~~v~i~iAv~  362 (426)
                      ++               ++||+++++.+.+ .|.||||++||+||+++||++||.||++|++  +.|++|+++||||||+
T Consensus       374 ~~iPh~~~~~evdvt~l~~~R~~l~~~~~~~~~~kls~~~~iiKA~a~AL~~~P~~Na~~~~~~~~i~~~~~vnigvAv~  453 (590)
T TIGR02927       374 QASAQLTQLHEVDMTKIAALRARAKAAFAEKEGVNLTFLPFFAKAVIDALKAHPNVNASYNADTKEITYHAAEHLGFAVD  453 (590)
T ss_pred             ccCCeEEEEeEEEcHHHHHHHHHHHhhhHHhcCCcccHHHHHHHHHHHHHHhCCHhheEEecCCCEEEEeCCccEEEEEE
Confidence            88               8999999876544 4899999999999999999999999999974  4799999999999999


Q ss_pred             cCCceEeecccCcCCCCHHHHHhccccccccccCcCCccchHHHHHHHHHHHcCCCCcccccC
Q psy16142        363 TDKGLFTPIVFDADKKGLVDISNDSRSLISFRRPVKFSEESNDVKTLAAKAKEGKLQPHEFQV  425 (426)
Q Consensus       363 ~~~GL~~pvi~~a~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~l~~~e~~~  425 (426)
                      +++||+||||||+|+|||.+|++                   ++++|++|||+|||+++||+|
T Consensus       454 t~~GL~vPvIk~a~~~sl~~ia~-------------------~i~~l~~kAr~gkL~p~e~~G  497 (590)
T TIGR02927       454 TDAGLLSPVIHNAGDLSLGEIAK-------------------AIADIAARARNGKLKPDDLAG  497 (590)
T ss_pred             CCCCcEecccCCcccCCHHHHHH-------------------HHHHHHHHHHcCCCChHHhCC
Confidence            99999999999999999999999                   999999999999999999998

This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).

>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

Probab=100.00  E-value=4.1e-56  Score=460.80  Aligned_cols=317  Identities=50%  Similarity=0.784  Sum_probs=237.2

Q ss_pred             EeccCCCCCcccceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCcc-ccCCcEEEEEEcCCcc
Q psy16142         85 VALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKD-VPIGKLVCIIVENESD  163 (426)
Q Consensus        85 i~mP~lg~s~d~g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~-v~vG~~l~~i~~~~~~  163 (426)
                      +.||.++.++.++++.+|++++||.|+.||.||+|||||++++++||++|+|.++++++|+ . |++|++|++|++.+++
T Consensus         2 i~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdKa~~ei~a~~~G~l~~i~v~~g~-~~v~vG~~l~~i~~~~~~   80 (435)
T TIGR01349         2 ITMPALSPTMTTGNLAKWLKKEGDKVNPGDVIAEIETDKATMEFEAVEEGYLAKILVPEGT-KDVPVNKPIAVLVEEKED   80 (435)
T ss_pred             cccCCCCCCcceEEEEEEEeCCCCccCCCCEEEEEEecceeeEEcCCCCEEEEEEEECCCC-EEecCCCEEEEEeccCCc
Confidence            5799999999999999999999999999999999999999999999999999999999998 8 9999999999764432


Q ss_pred             hhcccCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCccccChHHHHHHHHcCCCCcC
Q psy16142        164 VAAFKDFK-DDAPPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQ--KTSGGTRVYASPLAKRLAAEKGLDLSS  240 (426)
Q Consensus       164 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~--~~~~~~~~~asP~aR~lA~e~gIDl~~  240 (426)
                      ........ .+...+.+.....++..+...+.++..+  .+.......+..  ......++++||+||+||+||||||++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~asP~vR~lA~e~gvdl~~  158 (435)
T TIGR01349        81 VADAFKNYKLESSASAPKPSEIAPTAPPSAPKPSPAP--QKQSPEPSSPAPLSDKESGDRIFASPLAKKLAKEKGIDLSA  158 (435)
T ss_pred             cccccccccccccccCCCCcccccCCCCcCCCCCCCc--cccccccccccccccccccccccCCHHHHHHHHHcCCCHhH
Confidence            21000000 0000000000000000000000000000  000000000000  001122567999999999999999999


Q ss_pred             ccCCCCCCCcccchhhhhhhhcC-CCCC-C-CCC--C---CCC--CCCCceeecCCchhhHHHHHHHhhHHH--------
Q psy16142        241 IGAGSGLFGSITSADLSKASKAG-AVAA-P-SKS--A---KPT--ANGPFTDLPVSGVRGVIAKRLLQSKQV--------  302 (426)
Q Consensus       241 v~~gtG~~GrI~~~DV~~~~~~~-~~~~-~-~~~--~---~~~--~~~~~~~~~ls~~Rk~iA~~m~~S~~~--------  302 (426)
                      | +|||++|||+++||++|.... ..+. + ..+  .   .+.  .....+.+||++|||.|+++|++||++        
T Consensus       159 v-~gtG~~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ls~~rk~ia~~m~~S~~~ip~~~~~~  237 (435)
T TIGR01349       159 V-AGSGPNGRIVKKDIESFVPQSPASANFQAAATTPATKKAAAPVSTGSYEDVPLSNIRKIIAKRLLESKQTIPHYYVSI  237 (435)
T ss_pred             C-CCCCCCCceeHHHHHHHHhcccccCCCccccccccccccCCCccCCcceeecccHHHHHHHHHHHHHHhhCCeEEEEE
Confidence            9 999999999999999974321 0000 0 000  0   000  111245689999999999999999987        


Q ss_pred             -------HHHHHHHHHHHHHhCCcccHHHHHHHHHHHHhhhcccccceeeCCceEEcCCCcEEEEeecCCceEeecccCc
Q psy16142        303 -------IKLREQMNKALEKRGAKLSINDFIIKATALASRRVPEANSSWQDTFIREYHSVDVSVAVNTDKGLFTPIVFDA  375 (426)
Q Consensus       303 -------~~lr~~~~~~~~~~~~~~s~~~~~~ka~~~al~~~p~~n~~~~~~~i~~~~~v~i~iAv~~~~GL~~pvi~~a  375 (426)
                             +++|+++++...+ |.|+|+++||+||+++||++||.||++|+++.|++|++|||||||++++||+||||+|+
T Consensus       238 evd~t~l~~~r~~~~~~~~~-~~klt~~~~l~kA~a~AL~~~P~~Na~~~~~~i~~~~~vnigvAv~~~~GL~vPvi~~a  316 (435)
T TIGR01349       238 ECNVDKLLALRKELNAMASE-VYKLSVNDFIIKASALALREVPEANSSWTDNFIRRYKNVDISVAVATPDGLITPIVRNA  316 (435)
T ss_pred             EEEhHHHHHHHHHHHhhhhc-CCcccHHHHHHHHHHHHHHhCcHhheEEeCCeEEEeCCeeEEEEEECCCCeEECCCCCc
Confidence                   7889998876544 88999999999999999999999999999989999999999999999999999999999


Q ss_pred             CCCCHHHHHhccccccccccCcCCccchHHHHHHHHHHHcCCCCcccccC
Q psy16142        376 DKKGLVDISNDSRSLISFRRPVKFSEESNDVKTLAAKAKEGKLQPHEFQV  425 (426)
Q Consensus       376 ~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~l~~~e~~~  425 (426)
                      |+|||.||++                   ++++|++|||+|+|+++||+|
T Consensus       317 ~~~sl~eia~-------------------~i~~l~~~ar~~~L~~~d~~g  347 (435)
T TIGR01349       317 DAKGLSTISN-------------------EIKDLAKRARNNKLKPEEFQG  347 (435)
T ss_pred             ccCCHHHHHH-------------------HHHHHHHHHhcCCCChhhcCC
Confidence            9999999999                   999999999999999999998

This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.

>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]

Probab=100.00  E-value=3.2e-56  Score=457.47  Aligned_cols=296  Identities=43%  Similarity=0.685  Sum_probs=243.1

Q ss_pred             ceEeccCCCCCcccceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEcCCc
Q psy16142         83 DRVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENES  162 (426)
Q Consensus        83 ~~i~mP~lg~s~d~g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~~  162 (426)
                      .+|+||+||++|++|+|++|++++||.|++||.|++|||||+++||+||++|+|.+|++++|+ +|++|++|++|+.+++
T Consensus         3 ~ei~mP~lge~~~EG~I~~W~~k~GD~V~~gd~L~eVeTDKa~~EV~ap~~G~l~~i~~~~G~-~V~Vg~~I~~i~~~~~   81 (404)
T COG0508           3 IEIKMPDLGETMTEGTIVEWLKKVGDKVKEGDVLVEVETDKATMEVPAPDAGVLAKILVEEGD-TVPVGAVIARIEEEGA   81 (404)
T ss_pred             ceEecCCCCCccceEEEEEEecCCCCeecCCCeeEEEEcCceeEEecCCCCeEEEEEeccCCC-EEcCCCeEEEEecCCC
Confidence            468999999999999999999999999999999999999999999999999999999999999 7999999999988765


Q ss_pred             chhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccChHHHHHHHHcCCCCcCcc
Q psy16142        163 DVAAFKDFKDDAPPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRVYASPLAKRLAAEKGLDLSSIG  242 (426)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gIDl~~v~  242 (426)
                      +....           +..  .+++..+  . +.    ..+.    +.+.   ...++.++||++|+||+|+||||+++ 
T Consensus        82 ~~~a~-----------~~~--~~~~~~~--~-~~----~~~~----~~~~---~~~~~~~asP~~r~la~e~gidl~~v-  133 (404)
T COG0508          82 DAPAA-----------AEA--PPEPAAA--A-PA----SAPA----TAAS---AAAGRVLASPAVRRLAREAGIDLSKV-  133 (404)
T ss_pred             ccccc-----------Ccc--cCCcccc--C-cC----cccC----cccc---ccccccccCcchhhhhhhcCCCHHHc-
Confidence            42000           000  0000000  0 00    0000    0000   01156789999999999999999999 


Q ss_pred             CCCCCCCcccchhhhhhhhcCC--CCCCCC-CCCC-CCCCCceeecCCchhhHHHHHHHhhHHH---------------H
Q psy16142        243 AGSGLFGSITSADLSKASKAGA--VAAPSK-SAKP-TANGPFTDLPVSGVRGVIAKRLLQSKQV---------------I  303 (426)
Q Consensus       243 ~gtG~~GrI~~~DV~~~~~~~~--~~~~~~-~~~~-~~~~~~~~~~ls~~Rk~iA~~m~~S~~~---------------~  303 (426)
                      .|||++|||+++|+..+.....  ...... ...+ .....++++||+++||.|+++|..|+++               +
T Consensus       134 ~gtG~~gri~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rk~ia~~m~~s~~~~p~~t~~~evd~t~l~  213 (404)
T COG0508         134 KGTGPGGRITKKDVEAAVAEKAAAAAAPAPAAAAPASAAGEEERVPMSRIRKAIAERMVESKQTIPHLTLFNEVDMTKLM  213 (404)
T ss_pred             CCcCCCCceeccchhhhcccccccccccccccCCcccccCCceeeecccHHHHHHHHHHHHHhhCCeEEEEeeecHHHHH
Confidence            8999999999999998643220  000000 0001 2335578899999999999999999988               8


Q ss_pred             HHHHHHHHHHHHhCCcccHHHHHHHHHHHHhhhcccccceeeCC--ceEEcCCCcEEEEeecCCceEeecccCcCCCCHH
Q psy16142        304 KLREQMNKALEKRGAKLSINDFIIKATALASRRVPEANSSWQDT--FIREYHSVDVSVAVNTDKGLFTPIVFDADKKGLV  381 (426)
Q Consensus       304 ~lr~~~~~~~~~~~~~~s~~~~~~ka~~~al~~~p~~n~~~~~~--~i~~~~~v~i~iAv~~~~GL~~pvi~~a~~~~l~  381 (426)
                      .+|+++++.+.+.|.|+|+++|++||++.||++||.+|++|+++  .|++++++|||+||++++||+||||+|||+||+.
T Consensus       214 ~lr~~~~~~~~~~g~klt~~~f~~kA~~~Alk~~P~~Na~~~~~~~~iv~~~~~~igiAv~t~~GLvvpVir~a~~~~~~  293 (404)
T COG0508         214 ALRKKLKEEFEKKGVKLTFLSFLVKAVVKALKKFPEVNASIDGDGEEIVYHKYVNIGIAVDTPRGLVVPVIRDADKKSLA  293 (404)
T ss_pred             HHHHHhhhhhcccCccccHHHHHHHHHHHHHHhCCccceeeccccceEEEeccccEEEEEecCCCeEecceeecccCCHH
Confidence            99999998776569999999999999999999999999888875  7999999999999999999999999999999999


Q ss_pred             HHHhccccccccccCcCCccchHHHHHHHHHHHcCCCCcccccCC
Q psy16142        382 DISNDSRSLISFRRPVKFSEESNDVKTLAAKAKEGKLQPHEFQVR  426 (426)
Q Consensus       382 ~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~l~~~e~~~~  426 (426)
                      +|++                   ++++|+.|||+|||+++||||.
T Consensus       294 ~i~~-------------------~i~~la~~aR~~kl~~~e~~gg  319 (404)
T COG0508         294 EIAK-------------------EIKDLAKKARDGKLTPEEMQGG  319 (404)
T ss_pred             HHHH-------------------HHHHHHHHHHhcCcCHHHhCCc
Confidence            9999                   9999999999999999999983

>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

Probab=100.00  E-value=1.3e-55  Score=468.72  Aligned_cols=311  Identities=31%  Similarity=0.488  Sum_probs=237.4

Q ss_pred             ceEeccCCCCCcccceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEcCCc
Q psy16142         83 DRVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENES  162 (426)
Q Consensus        83 ~~i~mP~lg~s~d~g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~~  162 (426)
                      ..+.||.+|. |++|+|.+|++++||.|++||.|++|||||++++|+||++|+|.++++++|+ .|++|++|++|+.+++
T Consensus       117 ~~~~~P~~g~-~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~ei~a~~~G~v~~i~v~~G~-~v~vG~~l~~i~~~~~  194 (546)
T TIGR01348       117 QEVTVPDIGD-IEKVTVIEVLVKVGDTVSADQSLITLESDKASMEVPAPASGVVKSVKVKVGD-SVPTGDLILTLSVAGS  194 (546)
T ss_pred             eEEeCCCCCC-cceeEEeEEeeCCCCcccCCCeeEEEEecceeeEecCCCCcEEEEEecCCCC-EecCCCEEEEEecCCC
Confidence            6889999999 9999999999999999999999999999999999999999999999999999 8999999999976443


Q ss_pred             chhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCcc-ccChHHHHHHHHcCCCCcC
Q psy16142        163 DVAAFKDFKDDAPPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVP-SQKTSGGTRV-YASPLAKRLAAEKGLDLSS  240 (426)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~~~~~~-~asP~aR~lA~e~gIDl~~  240 (426)
                      +..... . .  ..+.+..   +.+.+.. ..+...+  .+.....+.+ ........++ ++||+||+||+||||||+.
T Consensus       195 ~~~~~~-~-~--~~~~~~~---~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gvdl~~  264 (546)
T TIGR01348       195 TPATAP-A-P--ASAQPAA---QSPAATQ-PEPAAAP--AAAKAQAPAPQQAGTQNPAKVDHAAPAVRRLAREFGVDLSA  264 (546)
T ss_pred             Cccccc-C-c--ccccccC---CCCcccc-ccccCCC--CCCCccCcccccccccccccccCCCHHHHHHHHHcCCCHhh
Confidence            211000 0 0  0000000   0000000 0000000  0000000000 0000112244 6999999999999999999


Q ss_pred             ccCCCCCCCcccchhhhhhhhcCC---CCCCC--C-C---C--CCC---C-CCCceeecCCchhhHHHHHHHhhHHH---
Q psy16142        241 IGAGSGLFGSITSADLSKASKAGA---VAAPS--K-S---A--KPT---A-NGPFTDLPVSGVRGVIAKRLLQSKQV---  302 (426)
Q Consensus       241 v~~gtG~~GrI~~~DV~~~~~~~~---~~~~~--~-~---~--~~~---~-~~~~~~~~ls~~Rk~iA~~m~~S~~~---  302 (426)
                      | .|||++|||+++||++|.....   ...+.  . +   .  .+.   . ...++.+||++|||.||++|++|+++   
T Consensus       265 v-~gtG~~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~rk~ia~~m~~S~~~iPh  343 (546)
T TIGR01348       265 V-KGTGIKGRILREDVQRFVKEPSVRAQAAAASAAGGAPGALPWPNVDFSKFGEVEEVDMSRIRKISGANLTRNWTMIPH  343 (546)
T ss_pred             C-CCCCCCCeEeHHHHHHHhhccccccCcccccccCCccccCCCccccccccCcceeeecchHHHHHHHHHHHHhhcCCE
Confidence            9 9999999999999999742211   00000  0 0   0  000   0 01235689999999999999999887   


Q ss_pred             ------------HHHHHHHHHHHHHhCCcccHHHHHHHHHHHHhhhcccccceeeC--CceEEcCCCcEEEEeecCCceE
Q psy16142        303 ------------IKLREQMNKALEKRGAKLSINDFIIKATALASRRVPEANSSWQD--TFIREYHSVDVSVAVNTDKGLF  368 (426)
Q Consensus       303 ------------~~lr~~~~~~~~~~~~~~s~~~~~~ka~~~al~~~p~~n~~~~~--~~i~~~~~v~i~iAv~~~~GL~  368 (426)
                                  +++|+++++..+..|.|+||++||+||++.||++||.+|++|++  +.|+++++|||||||++++||+
T Consensus       344 ~~~~~evdvt~l~~~r~~l~~~~~~~g~kls~~~~l~kA~~~AL~~~P~~Na~~~~~~~~i~~~~~vnigvAv~~~~GL~  423 (546)
T TIGR01348       344 VTHFDKADITEMEAFRKQQNAAVEKEGVKLTVLHILMKAVAAALKKFPKFNASLDLGGEQLILKKYVNIGVAVDTPNGLL  423 (546)
T ss_pred             EEEEEEEEcHHHHHHHHHHHhhhhhcCCcccHHHHHHHHHHHHHHhCChhhEEEeCCCCEEEEeCCcCEEEEEECCCCeE
Confidence                        88999999876667899999999999999999999999999984  4699999999999999999999


Q ss_pred             eecccCcCCCCHHHHHhccccccccccCcCCccchHHHHHHHHHHHcCCCCcccccC
Q psy16142        369 TPIVFDADKKGLVDISNDSRSLISFRRPVKFSEESNDVKTLAAKAKEGKLQPHEFQV  425 (426)
Q Consensus       369 ~pvi~~a~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~l~~~e~~~  425 (426)
                      ||||+|+|+|||.+|++                   ++++|++|||+|||+++||+|
T Consensus       424 vPvi~~a~~~sl~~ia~-------------------~~~~l~~~ar~g~L~~~d~~g  461 (546)
T TIGR01348       424 VPVIKDVDRKGITELAL-------------------ELSDLAKKARDGKLTPDEMQG  461 (546)
T ss_pred             ECCcCCcccCCHHHHHH-------------------HHHHHHHHHhcCCCCHHHhCC
Confidence            99999999999999999                   999999999999999999987

This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.

>PLN02528 2-oxoisovalerate dehydrogenase E2 component

Probab=100.00  E-value=1.9e-54  Score=446.19  Aligned_cols=294  Identities=24%  Similarity=0.363  Sum_probs=232.9

Q ss_pred             EeccCCCCCcccceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEcCCcch
Q psy16142         85 VALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENESDV  164 (426)
Q Consensus        85 i~mP~lg~s~d~g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~~~~  164 (426)
                      +.||+++.++.++++.+|++++||.|++||.|+++||||+.++++|+++|+|.++++++|+ .|++|++|++|+.++++.
T Consensus         1 ~~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdK~~~ev~a~~~G~v~~i~v~~G~-~v~vG~~l~~i~~~~~~~   79 (416)
T PLN02528          1 VPLAQTGEGIAECELLRWFVKEGDQVEEFQPLCEVQSDKATIEITSRYKGKVAQINFSPGD-IVKVGETLLKIMVEDSQH   79 (416)
T ss_pred             CCCCCCCCCccEEEEEEEEeCCCCEECCCCEEEEEEeCceeEEEecCCCEEEEEEEeCCCC-EeCCCCEEEEEeccCCcc
Confidence            4689999999999999999999999999999999999999999999999999999999999 899999999997543321


Q ss_pred             hcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccChHHHHHHHHcCCCCcCccCC
Q psy16142        165 AAFKDFKDDAPPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRVYASPLAKRLAAEKGLDLSSIGAG  244 (426)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gIDl~~v~~g  244 (426)
                      ... .        +++.   + +. . ...++   ...+ .    ...   ......++||+||+||+++||||+.| +|
T Consensus        80 ~~~-~--------~~~~---~-~~-~-~~~~~---~~~~-~----~~~---~~~~~~~asP~aR~lA~e~gvdl~~v-~g  132 (416)
T PLN02528         80 LRS-D--------SLLL---P-TD-S-SNIVS---LAES-D----ERG---SNLSGVLSTPAVRHLAKQYGIDLNDI-LG  132 (416)
T ss_pred             ccc-c--------CCCC---C-CC-C-ccCCC---CCCC-C----ccc---cccCCccCChHHHHHHHHhCCCHHHC-CC
Confidence            100 0        0000   0 00 0 00000   0000 0    000   00113569999999999999999999 99


Q ss_pred             CCCCCcccchhhhhhhhcCC----CC-CC--CCCCC-------CC-CCC--CceeecCCchhhHHHHHHHhhHHH-----
Q psy16142        245 SGLFGSITSADLSKASKAGA----VA-AP--SKSAK-------PT-ANG--PFTDLPVSGVRGVIAKRLLQSKQV-----  302 (426)
Q Consensus       245 tG~~GrI~~~DV~~~~~~~~----~~-~~--~~~~~-------~~-~~~--~~~~~~ls~~Rk~iA~~m~~S~~~-----  302 (426)
                      ||++|||+++||++|.....    .. .+  ..+..       +. ...  ..+.+||++|||+||++|++|+..     
T Consensus       133 tG~~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~ia~~m~~S~~ip~~~~  212 (416)
T PLN02528        133 TGKDGRVLKEDVLKYAAQKGVVKDSSSAEEATIAEQEEFSTSVSTPTEQSYEDKTIPLRGFQRAMVKTMTAAAKVPHFHY  212 (416)
T ss_pred             CCCCCcEeHHHHHHHhhcccccccccccccccCCccccccccCCCcccccCcceeeccchHHHHHHHHHHhcCcCCeEEE
Confidence            99999999999999743210    00 00  00000       00 001  135689999999999999999833     


Q ss_pred             ---------HHHHHHHHHHHHHhCCcccHHHHHHHHHHHHhhhcccccceeeCC--ceEEcCCCcEEEEeecCCceEeec
Q psy16142        303 ---------IKLREQMNKALEKRGAKLSINDFIIKATALASRRVPEANSSWQDT--FIREYHSVDVSVAVNTDKGLFTPI  371 (426)
Q Consensus       303 ---------~~lr~~~~~~~~~~~~~~s~~~~~~ka~~~al~~~p~~n~~~~~~--~i~~~~~v~i~iAv~~~~GL~~pv  371 (426)
                               +++|+++++.....|.|+||++||+||+++||++||.+|++|+++  .|++|+++||||||++++||+|||
T Consensus       213 ~~eid~~~l~~~r~~~~~~~~~~g~kls~~~~likA~a~aL~~~P~~Na~~~~~~~~i~~~~~vnIgiAv~~~~GL~vPv  292 (416)
T PLN02528        213 VEEINVDALVELKASFQENNTDPTVKHTFLPFLIKSLSMALSKYPLLNSCFNEETSEIRLKGSHNIGVAMATEHGLVVPN  292 (416)
T ss_pred             EEEEEhHHHHHHHHHHhhhhhhcCCcccHHHHHHHHHHHHHHhCchhhEEEecCCceEEEeCCCCeEEEEeCCCCeEecc
Confidence                     788999987655568999999999999999999999999999865  699999999999999999999999


Q ss_pred             ccCcCCCCHHHHHhccccccccccCcCCccchHHHHHHHHHHHcCCCCcccccC
Q psy16142        372 VFDADKKGLVDISNDSRSLISFRRPVKFSEESNDVKTLAAKAKEGKLQPHEFQV  425 (426)
Q Consensus       372 i~~a~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~l~~~e~~~  425 (426)
                      |+|+|+|||.+|++                   ++++|++|||+|+|+++||+|
T Consensus       293 i~~a~~~sl~eI~~-------------------~~~~l~~~ar~gkL~~~dl~g  327 (416)
T PLN02528        293 IKNVQSLSLLEITK-------------------ELSRLQHLAAENKLNPEDITG  327 (416)
T ss_pred             cCCcccCCHHHHHH-------------------HHHHHHHHHHcCCCCHHHhCC
Confidence            99999999999999                   999999999999999999997

>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated

Probab=100.00  E-value=5.6e-52  Score=448.20  Aligned_cols=307  Identities=30%  Similarity=0.427  Sum_probs=233.8

Q ss_pred             CceEeccCCCCCcccceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEcCC
Q psy16142         82 NDRVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENE  161 (426)
Q Consensus        82 ~~~i~mP~lg~s~d~g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~  161 (426)
                      ...+.||.+|  +++|++.+|++++||.|++||.||+|||||++++|+||++|+|.+|++++|+ .|++|++|+.|+.++
T Consensus       206 ~~~~~~p~lg--~~eg~v~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~ap~~G~l~~i~~~~G~-~v~~G~~l~~i~~~~  282 (633)
T PRK11854        206 VKDVNVPDIG--GDEVEVTEVMVKVGDKVEAEQSLITVEGDKASMEVPAPFAGTVKEIKVNVGD-KVKTGSLIMRFEVEG  282 (633)
T ss_pred             ceEEecCCCc--ccceEEEEEEecCCCeecCCCceEEEEecceeeEeeCCCCeEEEEEecCCCC-EecCCCEEEEEecCC
Confidence            3578999999  8999999999999999999999999999999999999999999999999999 899999999997544


Q ss_pred             cchhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccChHHHHHHHHcCCCCcCc
Q psy16142        162 SDVAAFKDFKDDAPPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRVYASPLAKRLAAEKGLDLSSI  241 (426)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gIDl~~v  241 (426)
                      +.....    . .+. .++   .+.+.+.....+.    ..+... ............++++||+||+||+++||||+.|
T Consensus       283 ~~~~~~----~-~~~-~~~---~~~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~~~~asP~aR~lA~e~gidl~~v  348 (633)
T PRK11854        283 AAPAAA----P-AKQ-EAA---APAPAAAKAEAPA----AAPAAK-AEGKSEFAENDAYVHATPLVRRLAREFGVNLAKV  348 (633)
T ss_pred             CCcccc----c-ccc-CCC---CCCccccccCCCC----CCCccc-ccccccccccCCccCCCchhHHHHHHhCCChhhc
Confidence            321100    0 000 000   0000000000000    000000 0000000011235679999999999999999999


Q ss_pred             cCCCCCCCcccchhhhhhhhcC---CCCCC---CCC-C----C--CC-C---CCCceeecCCchhhHHHHHHHhhHHH--
Q psy16142        242 GAGSGLFGSITSADLSKASKAG---AVAAP---SKS-A----K--PT-A---NGPFTDLPVSGVRGVIAKRLLQSKQV--  302 (426)
Q Consensus       242 ~~gtG~~GrI~~~DV~~~~~~~---~~~~~---~~~-~----~--~~-~---~~~~~~~~ls~~Rk~iA~~m~~S~~~--  302 (426)
                       +|||++|||+++||++|....   ....+   ... .    .  +. .   .+..+.+||++|||.||++|.+||++  
T Consensus       349 -~gtG~~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~ia~~m~~S~~~ip  427 (633)
T PRK11854        349 -KGTGRKGRILKEDVQAYVKDAVKRAEAAPAAAAAGGGGPGLLPWPKVDFSKFGEIEEVELGRIQKISGANLHRNWVMIP  427 (633)
T ss_pred             -CCCCCCCeEeHHHHHHHhhccccccccCCcccccccccccccccccccccccCcceEEeCchHHHHHHHHHHHHHhcCC
Confidence             999999999999999874221   00000   000 0    0  00 0   11235689999999999999999987  


Q ss_pred             -------------HHHHHHHHHHHH--HhCCcccHHHHHHHHHHHHhhhcccccceee--CCceEEcCCCcEEEEeecCC
Q psy16142        303 -------------IKLREQMNKALE--KRGAKLSINDFIIKATALASRRVPEANSSWQ--DTFIREYHSVDVSVAVNTDK  365 (426)
Q Consensus       303 -------------~~lr~~~~~~~~--~~~~~~s~~~~~~ka~~~al~~~p~~n~~~~--~~~i~~~~~v~i~iAv~~~~  365 (426)
                                   +++|+++++...  ++|.++|+++||+||+++||++||+||++|+  ++.|++|+++||||||++++
T Consensus       428 ~~~~~~evD~t~l~~~rk~~~~~~~~~~~g~k~t~~~~likAva~Al~~~P~~Na~~~~~~~~i~~~~~vnigiAV~~~~  507 (633)
T PRK11854        428 HVTQFDKADITELEAFRKQQNAEAEKRKLGVKITPLVFIMKAVAAALEQMPRFNSSLSEDGQRLTLKKYVNIGIAVDTPN  507 (633)
T ss_pred             eEEEEeEEEcHHHHHHHHHHhhhhhhhcccCcccHHHHHHHHHHHHHHhCCHhhEEEecCCCEEEEecccCEEEEEECCC
Confidence                         788888875432  3489999999999999999999999999996  45799999999999999999


Q ss_pred             ceEeecccCcCCCCHHHHHhccccccccccCcCCccchHHHHHHHHHHHcCCCCcccccC
Q psy16142        366 GLFTPIVFDADKKGLVDISNDSRSLISFRRPVKFSEESNDVKTLAAKAKEGKLQPHEFQV  425 (426)
Q Consensus       366 GL~~pvi~~a~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~l~~~e~~~  425 (426)
                      ||+||||+|++++||.+|++                   ++++|++++|+|+|+++||+|
T Consensus       508 GL~vPvi~~a~~~sl~~i~~-------------------~~~~l~~~ar~~~l~~~~~~g  548 (633)
T PRK11854        508 GLVVPVFKDVNKKGIIELSR-------------------ELMDISKKARDGKLTAGDMQG  548 (633)
T ss_pred             ceEEeeECCCccCCHHHHHH-------------------HHHHHHHHHHcCCCChHHcCC
Confidence            99999999999999999999                   999999999999999999987

>PRK11855 dihydrolipoamide acetyltransferase; Reviewed

Probab=100.00  E-value=2.3e-50  Score=429.78  Aligned_cols=307  Identities=33%  Similarity=0.491  Sum_probs=236.2

Q ss_pred             ceEeccCCCCCcccceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEcCCc
Q psy16142         83 DRVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENES  162 (426)
Q Consensus        83 ~~i~mP~lg~s~d~g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~~  162 (426)
                      ..+.||.+|. |++|++.+|++++||.|++||.|++||+||+.++|+||++|+|.++++++|+ .|.+|++|++|...++
T Consensus       120 ~~~~~P~~g~-~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~ev~Ap~~G~v~~i~~~~G~-~v~~G~~l~~i~~~~~  197 (547)
T PRK11855        120 VEVKVPDIGE-ITEVEVIEWLVKVGDTVEEDQSLITVETDKATMEIPSPVAGVVKEIKVKVGD-KVSVGSLLVVIEVAAA  197 (547)
T ss_pred             eEEecCCCCC-cceeEEeEEEeCCCCeecCCCeeEEEEecceeEEecCCCCeEEEEEecCCCC-EecCCCEEEEEecCCC
Confidence            5789999999 9999999999999999999999999999999999999999999999999999 8999999999976432


Q ss_pred             chhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcc-ccChHHHHHHHHcCCCCcCc
Q psy16142        163 DVAAFKDFKDDAPPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRV-YASPLAKRLAAEKGLDLSSI  241 (426)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~asP~aR~lA~e~gIDl~~v  241 (426)
                      +....  ... ... .+..  ...+  .+...+.. . ..+..   ..+.. ....++. ++||+||+||+||||||+.|
T Consensus       198 ~~~~~--~~~-~~~-~~~~--~~~~--~~~~~~~~-~-~~~~~---~~~~~-~~~~~~~~~asP~aR~lA~e~gidl~~v  263 (547)
T PRK11855        198 APAAA--AAP-AAA-APAA--AAAA--APAPAPAA-A-AAPAA---AAPAA-AAAPGKAPHASPAVRRLARELGVDLSQV  263 (547)
T ss_pred             ccccc--cCC-CCC-CCcc--cccc--CCCCCCcc-c-ccCCc---ccccc-ccccCCcccCChHHHHHHHHhCCCHHHC
Confidence            21000  000 000 0000  0000  00000000 0 00000   00000 0111233 79999999999999999999


Q ss_pred             cCCCCCCCcccchhhhhhhhcCC-C-CCC-----CC----C---CCCCC----CCCceeecCCchhhHHHHHHHhhHHH-
Q psy16142        242 GAGSGLFGSITSADLSKASKAGA-V-AAP-----SK----S---AKPTA----NGPFTDLPVSGVRGVIAKRLLQSKQV-  302 (426)
Q Consensus       242 ~~gtG~~GrI~~~DV~~~~~~~~-~-~~~-----~~----~---~~~~~----~~~~~~~~ls~~Rk~iA~~m~~S~~~-  302 (426)
                       .|||++|||+++||++|..... . ..+     ..    .   ..+..    ...++.+||++|||.||++|++||++ 
T Consensus       264 -~gtG~~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~r~~ia~~m~~S~~~i  342 (547)
T PRK11855        264 -KGTGKKGRITKEDVQAFVKGAMSAAAAAAAAAAAAGGGGLGLLPWPKVDFSKFGEIETKPLSRIKKISAANLHRSWVTI  342 (547)
T ss_pred             -cCCCCCCcEeHHHHHHHhhccccccccccccccccccccccccCCccccccccCcceEEeCcHHHHHHHHHHHHHhhcC
Confidence             9999999999999998743210 0 000     00    0   00000    01245689999999999999999987 


Q ss_pred             --------------HHHHHHHHHHHHHhCCcccHHHHHHHHHHHHhhhcccccceee--CCceEEcCCCcEEEEeecCCc
Q psy16142        303 --------------IKLREQMNKALEKRGAKLSINDFIIKATALASRRVPEANSSWQ--DTFIREYHSVDVSVAVNTDKG  366 (426)
Q Consensus       303 --------------~~lr~~~~~~~~~~~~~~s~~~~~~ka~~~al~~~p~~n~~~~--~~~i~~~~~v~i~iAv~~~~G  366 (426)
                                    +++|+++++.+++.|.++||++||+||+++||++||+||++|+  ++.|++|+++|||+||++++|
T Consensus       343 P~~~~~~evd~t~l~~~r~~~~~~~~~~g~k~s~~~~likAv~~al~~~P~ln~~~~~~~~~i~~~~~i~i~~Av~~~~g  422 (547)
T PRK11855        343 PHVTQFDEADITDLEALRKQLKKEAEKAGVKLTMLPFFIKAVVAALKEFPVFNASLDEDGDELTYKKYFNIGFAVDTPNG  422 (547)
T ss_pred             CeEEEEEEEEChHHHHHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHhCcHhhEEEccCCCEEEEeCCccEEEEEECCCc
Confidence                          7889999876666789999999999999999999999999998  457999999999999999999


Q ss_pred             eEeecccCcCCCCHHHHHhccccccccccCcCCccchHHHHHHHHHHHcCCCCcccccC
Q psy16142        367 LFTPIVFDADKKGLVDISNDSRSLISFRRPVKFSEESNDVKTLAAKAKEGKLQPHEFQV  425 (426)
Q Consensus       367 L~~pvi~~a~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~l~~~e~~~  425 (426)
                      |++|||+|++++||.+|++                   ++++|++++|+|+|.++||+|
T Consensus       423 l~vpvi~~~~~~sl~~i~~-------------------~~~~l~~~ar~~~l~~~~~~g  462 (547)
T PRK11855        423 LVVPVIKDVDKKSLLEIAR-------------------EIAELAKKARDGKLKPDDMQG  462 (547)
T ss_pred             cEeCCcCCCccCCHHHHHH-------------------HHHHHHHHHHcCCCChHhcCC
Confidence            9999999999999999999                   999999999999999999987

>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed

Probab=100.00  E-value=2.3e-48  Score=401.68  Aligned_cols=301  Identities=43%  Similarity=0.667  Sum_probs=231.2

Q ss_pred             eEeccCCCCCcccceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEcCCc-
Q psy16142         84 RVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENES-  162 (426)
Q Consensus        84 ~i~mP~lg~s~d~g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~~-  162 (426)
                      .+.||.++.++.++++.+|++++||.|+.||.|++|||||+.++++||++|+|.++++++|+ .|.+|++|++|...++ 
T Consensus         4 ~~~~P~lg~~~~~g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~Ap~~G~i~~~~v~~G~-~v~~G~~l~~i~~~~~~   82 (411)
T PRK11856          4 EFKMPDLGEGMTEGEIVEWLVKVGDTVKEGQPLAEVETDKATVEIPSPVAGTVAKLLVEEGD-VVPVGSVIAVIEEEGEA   82 (411)
T ss_pred             eEecCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEecceEEEEeCCCCeEEEEEecCCCC-EeCCCCEEEEEecCCCC
Confidence            58899999999999999999999999999999999999999999999999999999999999 8999999999976543 


Q ss_pred             chhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccChHHHHHHHHcCCCCcCcc
Q psy16142        163 DVAAFKDFKDDAPPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRVYASPLAKRLAAEKGLDLSSIG  242 (426)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gIDl~~v~  242 (426)
                      +......   ..     ..  .+.+.+.....+..  ...+...  ..+.  .....+.++||++|+||+||||||++| 
T Consensus        83 ~~~~~~~---~~-----~~--~~~~~~~~~~~~~~--~~~~~~~--~~~~--~~~~~~~~asP~~r~la~~~gidl~~i-  145 (411)
T PRK11856         83 EAAAAAE---AA-----PE--APAPEPAPAAAAAA--AAAPAAA--AAPA--APAAAAAKASPAVRKLARELGVDLSTV-  145 (411)
T ss_pred             ccccccC---CC-----CC--CCCCCCCCCCCCCC--CCCCCcc--cCcc--cccCCcccCChHHHHHHHHcCCCHHHC-
Confidence            2111000   00     00  00000000000000  0000000  0000  001123468999999999999999999 


Q ss_pred             CCCCCCCcccchhhhhhhhcCCCC-C-CCCCC--CC-CCCCCceeecCCchhhHHHHHHHhhHHH---------------
Q psy16142        243 AGSGLFGSITSADLSKASKAGAVA-A-PSKSA--KP-TANGPFTDLPVSGVRGVIAKRLLQSKQV---------------  302 (426)
Q Consensus       243 ~gtG~~GrI~~~DV~~~~~~~~~~-~-~~~~~--~~-~~~~~~~~~~ls~~Rk~iA~~m~~S~~~---------------  302 (426)
                      +|||++|||+++||+++....... . .....  .+ ......+.+||+++||.||++|.+||++               
T Consensus       146 ~gsG~~Gri~~~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~m~~s~~~~P~~~~~~~idvt~l  225 (411)
T PRK11856        146 KGSGPGGRITKEDVEAAAAAAAPAAAAAAAAAAAPPAAAAEGEERVPLSGMRKAIAKRMVESKREIPHFTLTDEVDVTAL  225 (411)
T ss_pred             cCCCCCCeEEHHHHHHHHhcccccCCCCCCCCCCCCcccCCCceEeeCcHHHHHHHHHHHHHhhcCCeEEEEEEEEhHHH
Confidence            999999999999999874321110 0 00000  00 1112356789999999999999999877               


Q ss_pred             HHHHHHHHHHHHHhCCcccHHHHHHHHHHHHhhhcccccceeeCCceEEcCCCcEEEEeecCCceEeecccCcCCCCHHH
Q psy16142        303 IKLREQMNKALEKRGAKLSINDFIIKATALASRRVPEANSSWQDTFIREYHSVDVSVAVNTDKGLFTPIVFDADKKGLVD  382 (426)
Q Consensus       303 ~~lr~~~~~~~~~~~~~~s~~~~~~ka~~~al~~~p~~n~~~~~~~i~~~~~v~i~iAv~~~~GL~~pvi~~a~~~~l~~  382 (426)
                      +++|+++++    .+.++||++||+||+++||++||+||++|+++.+++|++||||+||++++||++|||++++++++.+
T Consensus       226 ~~~~k~~~~----~~~~ls~~~~~ikav~~Al~~~P~~n~~~~~~~i~~~~~i~i~~av~~~~gl~~pvi~~~~~~sl~e  301 (411)
T PRK11856        226 LALRKQLKA----IGVKLTVTDFLIKAVALALKKFPELNASWDDDAIVLKKYVNIGIAVATDGGLIVPVIRDADKKSLFE  301 (411)
T ss_pred             HHHHHHHHh----hccCccHHHHHHHHHHHHHHhCcHhheEEeCCEEEEcCCcCEEEEEECCCCeEeCcCCCcccCCHHH
Confidence            555555542    2479999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhccccccccccCcCCccchHHHHHHHHHHHcCCCCcccccC
Q psy16142        383 ISNDSRSLISFRRPVKFSEESNDVKTLAAKAKEGKLQPHEFQV  425 (426)
Q Consensus       383 i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~l~~~e~~~  425 (426)
                      |++                   +++++++++|+|+|.++||+|
T Consensus       302 i~~-------------------~~~~~~~~ar~~~l~~~~~~~  325 (411)
T PRK11856        302 LAR-------------------EIKDLAEKAREGKLKPEELQG  325 (411)
T ss_pred             HHH-------------------HHHHHHHHHHcCCCCHHHhCC
Confidence            999                   999999999999999999986

>PLN02226 2-oxoglutarate dehydrogenase E2 component

Probab=100.00  E-value=7.2e-48  Score=397.48  Aligned_cols=269  Identities=29%  Similarity=0.430  Sum_probs=208.6

Q ss_pred             ceEeccCCCCCcccceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEcCCc
Q psy16142         83 DRVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENES  162 (426)
Q Consensus        83 ~~i~mP~lg~s~d~g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~~  162 (426)
                      ..++||++|+++++|+|.+|++++||.|++||+||+|||||++++|+||++|+|.+|++++|+ .|++|++|++|+..++
T Consensus        92 ~~i~mP~lg~~~~eG~I~~w~v~~GD~V~~Gq~L~~VEtdK~~~eI~Ap~~G~v~~ilv~eGd-~V~vG~~L~~I~~~~~  170 (463)
T PLN02226         92 VEAVVPHMGESITDGTLATFLKKPGERVQADEAIAQIETDKVTIDIASPASGVIQEFLVKEGD-TVEPGTKVAIISKSED  170 (463)
T ss_pred             eEEecCCCCCCcceEEEEEEEeCCCCEecCCCEEEEEEecceeeEEecCCCeEEEEEEeCCCC-EecCCCEEEEeccCCc
Confidence            578999999999999999999999999999999999999999999999999999999999999 8999999999975332


Q ss_pred             chhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccChHHHHHHHHcCCCCcCcc
Q psy16142        163 DVAAFKDFKDDAPPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRVYASPLAKRLAAEKGLDLSSIG  242 (426)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gIDl~~v~  242 (426)
                      ..+   .     ..  ...   +++. .  ..+.      +..   +.+ .  ....++.++|++|+.+           
T Consensus       171 ~~~---~-----~~--~~~---~~~~-~--~~~~------~~~---~~~-~--~~~~~v~asp~~r~~~-----------  211 (463)
T PLN02226        171 AAS---Q-----VT--PSQ---KIPE-T--TDPK------PSP---PAE-D--KQKPKVESAPVAEKPK-----------  211 (463)
T ss_pred             ccc---c-----cC--ccC---CCCC-C--CCCC------CCC---ccc-c--ccccCCCcchhhcccc-----------
Confidence            110   0     00  000   0000 0  0000      000   000 0  0012456788887533           


Q ss_pred             CCCCCCCcccchhhhhhhhcCCCCCCCCCCCCCCCCCceeecCCchhhHHHHHHHhhHHH---------------HHHHH
Q psy16142        243 AGSGLFGSITSADLSKASKAGAVAAPSKSAKPTANGPFTDLPVSGVRGVIAKRLLQSKQV---------------IKLRE  307 (426)
Q Consensus       243 ~gtG~~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~Rk~iA~~m~~S~~~---------------~~lr~  307 (426)
                      .++|+.+.-        .+    ... . .. ......+.+||++|||.||++|++||++               +++|+
T Consensus       212 ~~~~~~~~~--------~~----~~~-~-~~-~~~~~~~~ipls~~Rk~IA~~M~~S~~tiPh~t~~~evDvt~L~~lR~  276 (463)
T PLN02226        212 APSSPPPPK--------QS----AKE-P-QL-PPKERERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRS  276 (463)
T ss_pred             CCCCCCCCc--------cc----ccC-c-cc-ccCCCceeeeChHHHHHHHHHHHHHHhcCCEEEEEEEEEcHHHHHHHH
Confidence            122332210        00    000 0 00 0011235689999999999999999987               88999


Q ss_pred             HHHHHHHH-hCCcccHHHHHHHHHHHHhhhcccccceeeCCceEEcCCCcEEEEeecCCceEeecccCcCCCCHHHHHhc
Q psy16142        308 QMNKALEK-RGAKLSINDFIIKATALASRRVPEANSSWQDTFIREYHSVDVSVAVNTDKGLFTPIVFDADKKGLVDISND  386 (426)
Q Consensus       308 ~~~~~~~~-~~~~~s~~~~~~ka~~~al~~~p~~n~~~~~~~i~~~~~v~i~iAv~~~~GL~~pvi~~a~~~~l~~i~~~  386 (426)
                      ++++.+.+ .|.|+|+++||+||+++||++||.+|++|+++.|++|++|||||||++++||+||||+|+|+|||.||++ 
T Consensus       277 ~l~~~~~~~~g~klS~~~~liKAva~AL~~~P~lNa~~~~~~i~~~~~vnIGvAV~t~~GLvVPVIr~ad~~sl~eIa~-  355 (463)
T PLN02226        277 QYKDAFYEKHGVKLGLMSGFIKAAVSALQHQPVVNAVIDGDDIIYRDYVDISIAVGTSKGLVVPVIRGADKMNFAEIEK-  355 (463)
T ss_pred             HHHhhhhhhcCCcccHHHHHHHHHHHHHHhCCHhheEEcCCEEEEeCcccEEEEEECCCCEEeccCCCcccCCHHHHHH-
Confidence            99876655 4899999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             cccccccccCcCCccchHHHHHHHHHHHcCCCCcccccC
Q psy16142        387 SRSLISFRRPVKFSEESNDVKTLAAKAKEGKLQPHEFQV  425 (426)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~l~~~e~~~  425 (426)
                                        ++++|++|||+|+|+++||+|
T Consensus       356 ------------------ei~~L~~kAR~gkL~~~dl~G  376 (463)
T PLN02226        356 ------------------TINGLAKKANEGTISIDEMAG  376 (463)
T ss_pred             ------------------HHHHHHHHHHcCCCCHHHhCC
Confidence                              999999999999999999998

>PTZ00144 dihydrolipoamide succinyltransferase; Provisional

Probab=100.00  E-value=4.6e-47  Score=388.84  Aligned_cols=272  Identities=28%  Similarity=0.453  Sum_probs=204.5

Q ss_pred             CceEeccCCCCCcccceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEcCC
Q psy16142         82 NDRVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENE  161 (426)
Q Consensus        82 ~~~i~mP~lg~s~d~g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~  161 (426)
                      -..++||.+|.+|++|+|.+|++++||.|++||+|++|||||++++|+||++|+|.++++++|+ .|++|++|++|+..+
T Consensus        44 i~~i~~P~lg~~~~eg~I~~w~v~~Gd~V~~Gd~L~~vEtdK~~~ei~Ap~~G~v~~i~v~~G~-~V~~G~~L~~I~~~~  122 (418)
T PTZ00144         44 IKVIKVPTMGDSISEGTVVEWKKKVGDYVKEDEVICIIETDKVSVDIRAPASGVITKIFAEEGD-TVEVGAPLSEIDTGG  122 (418)
T ss_pred             ceEEecCCCCCCcceEEEEEEEeCCCCEeCCCCEEEEEEEcceEEEEecCCCeEEEEEEeCCCC-EecCCCEEEEEcCCC
Confidence            3578999999999999999999999999999999999999999999999999999999999999 899999999997543


Q ss_pred             cchhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccChHHHHHHHHcCCCCcCc
Q psy16142        162 SDVAAFKDFKDDAPPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRVYASPLAKRLAAEKGLDLSSI  241 (426)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gIDl~~v  241 (426)
                      +....        +. .+..  .+.+.   .+.+..+....|        ........+..++|.+|+.          .
T Consensus       123 ~~~~~--------~~-~~~~--~~~~~---~~~~~~~~~~~p--------~~~~~a~~~~~a~p~vr~~----------~  170 (418)
T PTZ00144        123 APPAA--------AP-AAAA--AAKAE---KTTPEKPKAAAP--------TPEPPAASKPTPPAAAKPP----------E  170 (418)
T ss_pred             ccccc--------cc-cccC--CCCCc---cCCCCCCCCCCC--------ccccccccccCCchhhhcc----------c
Confidence            31100        00 0000  00000   000000000000        0000001123455666531          0


Q ss_pred             cCCCCCCCcccchhhhhhhhcCCCCCCCCCCCCCCCCCceeecCCchhhHHHHHHHhhHHH---------------HHHH
Q psy16142        242 GAGSGLFGSITSADLSKASKAGAVAAPSKSAKPTANGPFTDLPVSGVRGVIAKRLLQSKQV---------------IKLR  306 (426)
Q Consensus       242 ~~gtG~~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~Rk~iA~~m~~S~~~---------------~~lr  306 (426)
                       .                .+......  . ..+......+.+||++|||+||++|++||++               +++|
T Consensus       171 -~----------------~~~~~~~~--~-~~~~~~~~~~~ipls~~Rk~IA~~M~~S~~~iPh~t~~~eid~t~l~~~r  230 (418)
T PTZ00144        171 -P----------------APAAKPPP--T-PVARADPRETRVPMSRMRQRIAERLKASQNTCAMLTTFNECDMSALMELR  230 (418)
T ss_pred             -c----------------CCCCCCCC--C-CccccCCCceeeeCcHHHHHHHHHHHHHHhhCCeEEEEEEEechHHHHHH
Confidence             0                00000000  0 0000011134579999999999999999987               7899


Q ss_pred             HHHHHHHHHh-CCcccHHHHHHHHHHHHhhhcccccceeeCCceEEcCCCcEEEEeecCCceEeecccCcCCCCHHHHHh
Q psy16142        307 EQMNKALEKR-GAKLSINDFIIKATALASRRVPEANSSWQDTFIREYHSVDVSVAVNTDKGLFTPIVFDADKKGLVDISN  385 (426)
Q Consensus       307 ~~~~~~~~~~-~~~~s~~~~~~ka~~~al~~~p~~n~~~~~~~i~~~~~v~i~iAv~~~~GL~~pvi~~a~~~~l~~i~~  385 (426)
                      +++++.+.+. |.|+|+++||+||++.||++||.+|++|+++.|++|+++||||||++++||+||||+|||+|||.||++
T Consensus       231 ~~~~~~~~~~~g~klS~~~~liKAva~AL~~~P~~Na~~~~~~i~~~~~vnIgvAV~~~~GL~vPVI~~ad~~sl~eIa~  310 (418)
T PTZ00144        231 KEYKDDFQKKHGVKLGFMSAFVKASTIALKKMPIVNAYIDGDEIVYRNYVDISVAVATPTGLVVPVIRNCENKSFAEIEK  310 (418)
T ss_pred             HHHHhhhhhhcCCcccHHHHHHHHHHHHHHhChHhheEEcCCEEEEecCCCEEEEEECCCCEEEccCCCcccCCHHHHHH
Confidence            9998766554 899999999999999999999999999999899999999999999999999999999999999999999


Q ss_pred             ccccccccccCcCCccchHHHHHHHHHHHcCCCCcccccC
Q psy16142        386 DSRSLISFRRPVKFSEESNDVKTLAAKAKEGKLQPHEFQV  425 (426)
Q Consensus       386 ~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~l~~~e~~~  425 (426)
                                         ++++|++|||+|+|+++||+|
T Consensus       311 -------------------ei~~L~~~ar~g~L~~~e~~G  331 (418)
T PTZ00144        311 -------------------ELADLAEKARNNKLTLEDMTG  331 (418)
T ss_pred             -------------------HHHHHHHHHHcCCCCHHHhCC
Confidence                               999999999999999999998

>KOG0558|consensus

Probab=100.00  E-value=1.7e-47  Score=371.24  Aligned_cols=291  Identities=24%  Similarity=0.396  Sum_probs=237.9

Q ss_pred             ceEeccCCCCCcccceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEcCCc
Q psy16142         83 DRVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENES  162 (426)
Q Consensus        83 ~~i~mP~lg~s~d~g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~~  162 (426)
                      ..+++.++|+++.+.++.+|++++||.|++.|.||||++||++++|.+.++|+|++|+-..++ ...||++|..++.++.
T Consensus        65 v~f~LsdiGEGI~Ev~vkeWfVKEGDtVeqFd~lCEVQSDKAsvtItsRydG~v~ki~h~~dd-ia~VGk~Lvd~eve~~  143 (474)
T KOG0558|consen   65 VQFKLSDIGEGIAEVTVKEWFVKEGDTVEQFDPLCEVQSDKASVTITSRYDGKVKKIYHSPDD-IAKVGKPLVDLEVEDS  143 (474)
T ss_pred             EEEEhhhccccceeeeeeeehhhcCCcHHHhcchhhcccccceEEEEeeecceEEEEeeCchh-hhHhCcceeeeeeccC
Confidence            456888999999999999999999999999999999999999999999999999999999999 8999999999986542


Q ss_pred             chhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccChHHHHHHHHcCCCCcCcc
Q psy16142        163 DVAAFKDFKDDAPPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRVYASPLAKRLAAEKGLDLSSIG  242 (426)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gIDl~~v~  242 (426)
                      .....             .  ..+ +      +   ..+.+..     + ..........++|++||||.|+||||+.| 
T Consensus       144 ~ds~e-------------~--s~e-s------~---~vs~~~~-----~-~~~~~~~~tlaTPaVRrlA~e~~idla~v-  191 (474)
T KOG0558|consen  144 QDSPE-------------D--SDE-S------P---AVSLGES-----K-QGEESLLKTLATPAVRRLAKENGIDLAEV-  191 (474)
T ss_pred             cCCcc-------------c--CCc-c------c---cccCCCC-----c-hhhhhccccccCHHHHHHHHHhCCceEee-
Confidence            11000             0  000 0      0   0000000     0 00011234568999999999999999999 


Q ss_pred             CCCCCCCcccchhhhhhhhcCCC--CCCC-------CCCCC-----CCCCCceeecCCchhhHHHHHHHhhHHH------
Q psy16142        243 AGSGLFGSITSADLSKASKAGAV--AAPS-------KSAKP-----TANGPFTDLPVSGVRGVIAKRLLQSKQV------  302 (426)
Q Consensus       243 ~gtG~~GrI~~~DV~~~~~~~~~--~~~~-------~~~~~-----~~~~~~~~~~ls~~Rk~iA~~m~~S~~~------  302 (426)
                      +|||++|||+|+||+++..+.+.  ..+.       ++..|     ..-.....+|+.+.+|+|-+.|+++...      
T Consensus       192 ~gtGKdGRvLKeDvL~fl~q~pg~~~~~~~~~~a~~~~~~ps~~a~~~~~~Dkt~plrGf~rAMvKtMt~alkiPHF~y~  271 (474)
T KOG0558|consen  192 TGTGKDGRVLKEDVLRFLGQVPGFVTDPSPSEHAVIPGPSPSTKASSNLEADKTVPLRGFSRAMVKTMTEALKIPHFGYV  271 (474)
T ss_pred             eccCCCCcchHHHHHHHhccCCCCccCCCCceeecCCCCCCcccccCcccccceeechhHHHHHHHHHHHHhcCCccccc
Confidence            99999999999999998532110  0000       00111     1112245689999999999999999766      


Q ss_pred             --------HHHHHHHHHHHHHhCCcccHHHHHHHHHHHHhhhcccccceeeC--CceEEcCCCcEEEEeecCCceEeecc
Q psy16142        303 --------IKLREQMNKALEKRGAKLSINDFIIKATALASRRVPEANSSWQD--TFIREYHSVDVSVAVNTDKGLFTPIV  372 (426)
Q Consensus       303 --------~~lr~~~~~~~~~~~~~~s~~~~~~ka~~~al~~~p~~n~~~~~--~~i~~~~~v~i~iAv~~~~GL~~pvi  372 (426)
                              +++|+.++....++|+|+||++|++||+.+||-+||.+|++++.  +.|+++.+.|||||+||+.||+||.|
T Consensus       272 dEIn~~sLvklr~elk~~a~e~~IKltfmPf~iKaaSlaL~kyP~vNss~d~~~e~ii~K~sHNIgvAmdT~~GLvVPNi  351 (474)
T KOG0558|consen  272 DEINCDSLVKLRQELKENAKERGIKLTFMPFFIKAASLALLKYPIVNSSFDEESENIILKGSHNIGVAMDTEQGLVVPNI  351 (474)
T ss_pred             cccChHHHHHHHHHHhhhhhhcCceeeehHHHHHHHHHHHhhCccccchhhhhhhhhhhhcccceeEEecCCCceeccCc
Confidence                    89999999988889999999999999999999999999999987  47999999999999999999999999


Q ss_pred             cCcCCCCHHHHHhccccccccccCcCCccchHHHHHHHHHHHcCCCCcccccC
Q psy16142        373 FDADKKGLVDISNDSRSLISFRRPVKFSEESNDVKTLAAKAKEGKLQPHEFQV  425 (426)
Q Consensus       373 ~~a~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~l~~~e~~~  425 (426)
                      +|++.+|+.||++                   |+.+|.+..+.|+|+++|+.|
T Consensus       352 KN~q~~si~eIak-------------------eLnrLq~~g~~~qls~~D~t~  385 (474)
T KOG0558|consen  352 KNVQSLSIFEIAK-------------------ELNRLQELGANGQLSPEDLTG  385 (474)
T ss_pred             cccchhhHHHHHH-------------------HHHHHHHhhhcCCcChhhccC
Confidence            9999999999999                   999999999999999999987

>KOG0559|consensus

Probab=100.00  E-value=1.6e-45  Score=359.00  Aligned_cols=282  Identities=31%  Similarity=0.460  Sum_probs=205.8

Q ss_pred             CceEeccCCCCCcccceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEcCC
Q psy16142         82 NDRVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENE  161 (426)
Q Consensus        82 ~~~i~mP~lg~s~d~g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~  161 (426)
                      ...+..|.+++++++|++..|++++||+|++++.+++|||||.+++|.||.+|+|.+++|++|+ +|.+|+.|+.|....
T Consensus        72 ~vtv~vP~faESiteG~l~~~lK~~Gd~v~~DE~va~IETDK~tv~V~sP~sGvi~e~lvk~gd-tV~~g~~la~i~~ga  150 (457)
T KOG0559|consen   72 VVTVEVPPFAESITEGDLAQWLKKVGDRVNEDEAVAEIETDKTTVEVPSPASGVITELLVKDGD-TVTPGQKLAKISPGA  150 (457)
T ss_pred             eeEEecCCcccccccchHHHHhhCcccccccchhheeeeccceeeeccCCCcceeeEEecCCCC-cccCCceeEEecCCC
Confidence            4568899999999999999999999999999999999999999999999999999999999999 899999999998753


Q ss_pred             cchhcccC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccChHHHHHHHHcCCCCcC
Q psy16142        162 SDVAAFKD-FKDDAPPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRVYASPLAKRLAAEKGLDLSS  240 (426)
Q Consensus       162 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gIDl~~  240 (426)
                      ++...... ++..++..+++.+..+.+    .+.+ .+..+.|...+++.+..    .....++ +...-..+-+     
T Consensus       151 Apa~~~~~apa~~~pk~~~a~~a~p~~----~s~~-~p~~~apv~e~p~~p~~----~~P~~~~-a~k~~v~~~~-----  215 (457)
T KOG0559|consen  151 APAKGGASAPAKAEPKTAPAAAAPPKP----SSKP-PPKEAAPVAESPPAPSS----PEPVPAS-AKKPSVAQPK-----  215 (457)
T ss_pred             CCccccccCCCccCCCCCCCCCCCCCc----cCCC-CccccCCCCCCCCCCCC----CCCCCcc-ccCccccCCC-----
Confidence            33211100 000000000000000000    0000 00001111100001100    0000011 0000000000     


Q ss_pred             ccCCCCCCCcccchhhhhhhhcCCCCCCCCCCCCCCCCCceeecCCchhhHHHHHHHhhHHH---------------HHH
Q psy16142        241 IGAGSGLFGSITSADLSKASKAGAVAAPSKSAKPTANGPFTDLPVSGVRGVIAKRLLQSKQV---------------IKL  305 (426)
Q Consensus       241 v~~gtG~~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~Rk~iA~~m~~S~~~---------------~~l  305 (426)
                                                .++... ..+...+.+++|++||+.||.||.+|+++               +++
T Consensus       216 --------------------------~~p~~~-~~~~R~E~RVkMnRmR~RIA~RLKdsQNt~A~LTTFNEvDMS~lm~m  268 (457)
T KOG0559|consen  216 --------------------------PPPSEG-ATPSRSERRVKMNRMRLRIAERLKDSQNTAAMLTTFNEVDMSNLMEM  268 (457)
T ss_pred             --------------------------CCcccc-cCCCcchhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHH
Confidence                                      000000 01234567899999999999999999877               899


Q ss_pred             HHHHHHHH-HHhCCcccHHHHHHHHHHHHhhhcccccceeeCCceEEcCCCcEEEEeecCCceEeecccCcCCCCHHHHH
Q psy16142        306 REQMNKAL-EKRGAKLSINDFIIKATALASRRVPEANSSWQDTFIREYHSVDVSVAVNTDKGLFTPIVFDADKKGLVDIS  384 (426)
Q Consensus       306 r~~~~~~~-~~~~~~~s~~~~~~ka~~~al~~~p~~n~~~~~~~i~~~~~v~i~iAv~~~~GL~~pvi~~a~~~~l~~i~  384 (426)
                      |+++++.+ +++|+|+.|+++|+||++.||++.|.+|+.++++.|+|+++|||+|||+|++||+||||||+++|++.||.
T Consensus       269 Rk~ykdaf~kKhGvKlGfMs~F~KA~~~Alq~qPvVNavIdg~~iVYRDyvDISvAVaTpkGLVvPViRnae~Mn~adIE  348 (457)
T KOG0559|consen  269 RKQYKDAFLKKHGVKLGFMSGFSKAAAYALQDQPVVNAVIDGDDIVYRDYVDISVAVATPKGLVVPVIRNAESMNFADIE  348 (457)
T ss_pred             HHHHHHHHHHHhCceeeehhHHHHHHHHHhhhCcceeeeecCCeeEEeecceeEEEeecCCceeeeeecccccccHHHHH
Confidence            99998754 77999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccccccccccCcCCccchHHHHHHHHHHHcCCCCcccccC
Q psy16142        385 NDSRSLISFRRPVKFSEESNDVKTLAAKAKEGKLQPHEFQV  425 (426)
Q Consensus       385 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~l~~~e~~~  425 (426)
                      +                   ++..|..|||+|+|..+||.|
T Consensus       349 ~-------------------~i~~L~~KAr~g~laiedM~g  370 (457)
T KOG0559|consen  349 K-------------------TIAGLGKKARDGKLAIEDMAG  370 (457)
T ss_pred             H-------------------HHHHHHHhhccCceeeeeccC
Confidence            9                   999999999999999999987

>PRK14843 dihydrolipoamide acetyltransferase; Provisional

Probab=100.00  E-value=3.8e-41  Score=339.44  Aligned_cols=188  Identities=29%  Similarity=0.462  Sum_probs=159.8

Q ss_pred             CCccccChHHHHHHHHcCCCCcCccCCCCCCCcccchhhhhhhhcCC--C--CCCCC---C-CCCC---CCCCceeecCC
Q psy16142        218 GTRVYASPLAKRLAAEKGLDLSSIGAGSGLFGSITSADLSKASKAGA--V--AAPSK---S-AKPT---ANGPFTDLPVS  286 (426)
Q Consensus       218 ~~~~~asP~aR~lA~e~gIDl~~v~~gtG~~GrI~~~DV~~~~~~~~--~--~~~~~---~-~~~~---~~~~~~~~~ls  286 (426)
                      ..++++||+||+||+|+||||++| +|||++|||+++||+++.....  .  .++..   . ..+.   .....+.+||+
T Consensus        46 ~~~~~asP~aR~lA~e~gidl~~v-~gtG~~GrI~k~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~  124 (347)
T PRK14843         46 TNVVRISPLAKRIALEHNIAWQEI-QGTGHRGKIMKKDVLALLPENIENDSIKSPAQIEKVEEVPDNVTPYGEIERIPMT  124 (347)
T ss_pred             cccccCCchhhHHHHHcCCCHhhC-CCCCCCCcccHHHHHHHHhccccCccccCCCCCccccCCCcccccCCcceeeeCc
Confidence            345679999999999999999999 9999999999999999842211  0  10000   0 0000   11224568999


Q ss_pred             chhhHHHHHHHhhHHH---------------HHHHHHHHHHHHH-hCCcccHHHHHHHHHHHHhhhcccccceeeC--Cc
Q psy16142        287 GVRGVIAKRLLQSKQV---------------IKLREQMNKALEK-RGAKLSINDFIIKATALASRRVPEANSSWQD--TF  348 (426)
Q Consensus       287 ~~Rk~iA~~m~~S~~~---------------~~lr~~~~~~~~~-~~~~~s~~~~~~ka~~~al~~~p~~n~~~~~--~~  348 (426)
                      +|||.||++|++||++               +++|+++++.+.+ .|.|+|+++||+||++.||++||.||++|++  +.
T Consensus       125 ~~r~~ia~~m~~S~~~ip~~~~~~evd~t~l~~~r~~~~~~~~~~~~~kls~~~~likA~a~AL~~~P~~Na~~~~~~~~  204 (347)
T PRK14843        125 PMRKVIAQRMVESYLTAPTFTLNYEVDMTEMLALRKKVLEPIMEATGKKTTVTDLLSLAVVKTLMKHPYINASLTEDGKT  204 (347)
T ss_pred             HHHHHHHHHHHHHHhhCCeEEEEEEEEchHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHhCcceeEEEecCCCe
Confidence            9999999999999987               8899999875543 4889999999999999999999999999985  46


Q ss_pred             eEEcCCCcEEEEeecCCceEeecccCcCCCCHHHHHhccccccccccCcCCccchHHHHHHHHHHHcCCCCcccccC
Q psy16142        349 IREYHSVDVSVAVNTDKGLFTPIVFDADKKGLVDISNDSRSLISFRRPVKFSEESNDVKTLAAKAKEGKLQPHEFQV  425 (426)
Q Consensus       349 i~~~~~v~i~iAv~~~~GL~~pvi~~a~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~l~~~e~~~  425 (426)
                      |++|+++||||||++++||+||||||||+|||.||++                   ++++|++|||+|||+++||+|
T Consensus       205 i~~~~~vnigvAV~~~~GL~vPVIr~a~~~sl~eIa~-------------------~i~~l~~~Ar~~kL~~~d~~G  262 (347)
T PRK14843        205 IITHNYVNLAMAVGMDNGLMTPVVYNAEKMSLSELVV-------------------AFKDVIGRTLDGKLAPSELQN  262 (347)
T ss_pred             EEEecccceEEEEecCCCeEeCcCCCcccCCHHHHHH-------------------HHHHHHHHHHcCCCCHHHhCC
Confidence            9999999999999999999999999999999999999                   999999999999999999998

>PRK11857 dihydrolipoamide acetyltransferase; Reviewed

Probab=100.00  E-value=6.6e-41  Score=332.45  Aligned_cols=185  Identities=28%  Similarity=0.434  Sum_probs=157.9

Q ss_pred             cccChHHHHHHHHcCCCCcCccCCCCCCCcccchhhhhhhhcC----CCCCCC--C--CC-----CC---CCCCCceeec
Q psy16142        221 VYASPLAKRLAAEKGLDLSSIGAGSGLFGSITSADLSKASKAG----AVAAPS--K--SA-----KP---TANGPFTDLP  284 (426)
Q Consensus       221 ~~asP~aR~lA~e~gIDl~~v~~gtG~~GrI~~~DV~~~~~~~----~~~~~~--~--~~-----~~---~~~~~~~~~~  284 (426)
                      +++||+||+||+|+||||++| +|||++|||+++||+++....    .+..+.  +  ..     .+   ......+.+|
T Consensus         2 ~~asP~aR~lA~e~gvdl~~v-~gtG~~GrI~k~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (306)
T PRK11857          2 ILATPIARALAKKLGIDISLL-KGSGRDGKILAEDVENFIKSLKSAPTPAEAASVSSAQQAAKTAAPAAAPPKLEGKREK   80 (306)
T ss_pred             cCCCchhHHHHHHcCCCHHHC-CCCCCCCceeHHHHHHHhhccccccCCccccccccccccccccCCcccccCCCceecc
Confidence            468999999999999999999 999999999999999974211    100000  0  00     00   0111245689


Q ss_pred             CCchhhHHHHHHHhhHHH---------------HHHHHHHHHHHHH-hCCcccHHHHHHHHHHHHhhhcccccceeeCC-
Q psy16142        285 VSGVRGVIAKRLLQSKQV---------------IKLREQMNKALEK-RGAKLSINDFIIKATALASRRVPEANSSWQDT-  347 (426)
Q Consensus       285 ls~~Rk~iA~~m~~S~~~---------------~~lr~~~~~~~~~-~~~~~s~~~~~~ka~~~al~~~p~~n~~~~~~-  347 (426)
                      |++||++||++|++||++               +++|+++++.+.+ .|.|+||++||+||++.||++||.+|++|+++ 
T Consensus        81 ls~~R~~ia~~M~~S~~~ip~~~~~~evd~t~l~~~r~~~~~~~~~~~g~kls~~~~likA~a~AL~~~P~~Na~~~~~~  160 (306)
T PRK11857         81 VAPIRKAIARAMTNSWSNVAYVNLVNEIDMTKLWDLRKSVKDPVLKTEGVKLTFLPFIAKAILIALKEFPIFAAKYDEAT  160 (306)
T ss_pred             CcHHHHHHHHHHHHhhccCCeEEEEEEEEchHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHHHhCcHhhEEEeCCC
Confidence            999999999999999987               7899999876544 58999999999999999999999999999853 


Q ss_pred             -ceEEcCCCcEEEEeecCCceEeecccCcCCCCHHHHHhccccccccccCcCCccchHHHHHHHHHHHcCCCCcccccC
Q psy16142        348 -FIREYHSVDVSVAVNTDKGLFTPIVFDADKKGLVDISNDSRSLISFRRPVKFSEESNDVKTLAAKAKEGKLQPHEFQV  425 (426)
Q Consensus       348 -~i~~~~~v~i~iAv~~~~GL~~pvi~~a~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~l~~~e~~~  425 (426)
                       .|+++++|||||||++++||+||||+|+|+|||.||++                   ++++|++|||+|||+++||+|
T Consensus       161 ~~i~~~~~vnigvAv~~~~GL~vPVI~~a~~~sl~eIa~-------------------~i~~l~~~Ar~~kL~~~dl~g  220 (306)
T PRK11857        161 SELVYPDTLNLGIAVDTEAGLMVPVIKNAQKLSIVEIAK-------------------EISRLAKAARERKIKPDEMKG  220 (306)
T ss_pred             CEEEEcCCccEEEEEECCCCEEeCCcCCcCcCCHHHHHH-------------------HHHHHHHHHHcCCCChhhcCC
Confidence             79999999999999999999999999999999999999                   999999999999999999997

>PF00198 2-oxoacid_dh: 2-oxoacid dehydrogenases acyltransferase (catalytic domain); InterPro: IPR001078 This domain is found in the lipoamide acyltransferase component of the branched-chain alpha-keto acid dehydrogenase complex 2

Probab=99.96  E-value=1.3e-29  Score=243.02  Aligned_cols=129  Identities=46%  Similarity=0.731  Sum_probs=114.9

Q ss_pred             CCceeecCCchhhHHHHHHHhhHHH---------------HHHHHHHHHHHHHhCCcccHHHHHHHHHHHHhhhcccccc
Q psy16142        278 GPFTDLPVSGVRGVIAKRLLQSKQV---------------IKLREQMNKALEKRGAKLSINDFIIKATALASRRVPEANS  342 (426)
Q Consensus       278 ~~~~~~~ls~~Rk~iA~~m~~S~~~---------------~~lr~~~~~~~~~~~~~~s~~~~~~ka~~~al~~~p~~n~  342 (426)
                      +.++++|++++||+||++|++||++               +++|+++++.....+.++|+++|++||++.||++||.+|+
T Consensus         2 ~~~~~~~ls~~r~~ia~~m~~S~~~iP~~~~~~evd~t~l~~~r~~l~~~~~~~~~kis~~~~likAva~AL~~~P~lNa   81 (231)
T PF00198_consen    2 GEETRVPLSGMRKAIAKRMTESLQTIPHFTLSREVDVTALLALRKELKEAGEEPGGKISITDFLIKAVALALKEHPELNA   81 (231)
T ss_dssp             SSCEEEES-HHHHHHHHHHHHHHHHS-EEEEEEEEETHHHHHHHHHHHHHHHHTTST-THHHHHHHHHHHHHHHSGGGSE
T ss_pred             CCcEEEECcHHHHHHHHHHHHHHhcCCeEEEEEEEEHHHHHHHHHHhhhHHHhhccCCChhHeeeehHhhhhHHHHHhcc
Confidence            3568899999999999999999977               8899999887776677999999999999999999999999


Q ss_pred             eeeCCc-eEEcCCCcEEEEeecCCceEeecccCcCCCCHHHHHhccccccccccCcCCccchHHHHHHHHHHHcCCCCcc
Q psy16142        343 SWQDTF-IREYHSVDVSVAVNTDKGLFTPIVFDADKKGLVDISNDSRSLISFRRPVKFSEESNDVKTLAAKAKEGKLQPH  421 (426)
Q Consensus       343 ~~~~~~-i~~~~~v~i~iAv~~~~GL~~pvi~~a~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~l~~~  421 (426)
                      +|+++. |++++++||||||++++||+||||+|+++|||.||++                   ++++|++|||+|+|+++
T Consensus        82 ~~~~~~~i~~~~~vnIgvAV~~~~GL~vPVIr~a~~~sl~eIa~-------------------e~~~l~~~ar~g~l~~~  142 (231)
T PF00198_consen   82 SWDGDGEIVLYERVNIGVAVDTPDGLVVPVIRDADKKSLAEIAK-------------------ELRDLAERAREGKLTPE  142 (231)
T ss_dssp             EEETTSEEEEESS--EEEEEEETTEEEEEEETTGGGS-HHHHHH-------------------HHHHHHHHHHTT---GG
T ss_pred             ccccccceeeeeeEEEEEEEEcCCCEEEEEEeCCccccHHHHHH-------------------HHhhhhccchhhhhhhh
Confidence            999887 9999999999999999999999999999999999999                   99999999999999999


Q ss_pred             cccC
Q psy16142        422 EFQV  425 (426)
Q Consensus       422 e~~~  425 (426)
                      ||+|
T Consensus       143 d~~g  146 (231)
T PF00198_consen  143 DLQG  146 (231)
T ss_dssp             GGSS
T ss_pred             hhhc
Confidence            9998

3.1 from EC, which catalyses the overall conversion of alpha-keto acids to acyl-CoA and carbon dioxide []. It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3). The domain is also found in the dihydrolipoamide succinyltransferase component of the 2-oxoglutarate dehydrogenase complex 2.3.1.61 from EC. These proteins contain one to three copies of a lipoyl binding domain followed by the catalytic domain.; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1EAF_A 1EAA_A 1DPD_A 1EAE_A 1DPC_A 1EAB_A 1DPB_A 1EAC_A 1EAD_A 2II5_H ....

>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed

Probab=99.92  E-value=2.1e-24  Score=233.51  Aligned_cols=127  Identities=24%  Similarity=0.359  Sum_probs=119.3

Q ss_pred             ceeecCCchhhHHHHHHHhhHHH--------------HHHHHHHHHHHH-HhCCcccHHHHHHHHHHHHhhhccccccee
Q psy16142        280 FTDLPVSGVRGVIAKRLLQSKQV--------------IKLREQMNKALE-KRGAKLSINDFIIKATALASRRVPEANSSW  344 (426)
Q Consensus       280 ~~~~~ls~~Rk~iA~~m~~S~~~--------------~~lr~~~~~~~~-~~~~~~s~~~~~~ka~~~al~~~p~~n~~~  344 (426)
                      .+..||++++++||++|..|+..              +++|..+|+++. .+|.|+||++||+||+++||++||.+|++|
T Consensus       115 ~~~~~LrG~a~aiAkNM~aSL~vPtaTsvr~Ip~k~L~dnR~~In~~l~r~~GgKVSFThlI~kAvv~AL~~~P~mNasy  194 (1228)
T PRK12270        115 DEVTPLRGAAAAVAKNMDASLEVPTATSVRAVPAKLLIDNRIVINNHLKRTRGGKVSFTHLIGYALVQALKAFPNMNRHY  194 (1228)
T ss_pred             cceeecccHHHHHHHHHHhhhccCceeeeecccHHHHHHHHHHHHHHhhhccCCcccHHHHHHHHHHHHHHhCchhhcee
Confidence            46789999999999999999876              889999998876 479999999999999999999999999999


Q ss_pred             e--CCc--eEEcCCCcEEEEeecC-----CceEeecccCcCCCCHHHHHhccccccccccCcCCccchHHHHHHHHHHHc
Q psy16142        345 Q--DTF--IREYHSVDVSVAVNTD-----KGLFTPIVFDADKKGLVDISNDSRSLISFRRPVKFSEESNDVKTLAAKAKE  415 (426)
Q Consensus       345 ~--~~~--i~~~~~v~i~iAv~~~-----~GL~~pvi~~a~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~  415 (426)
                      +  ++.  |+++++|||||||+++     +||+||+|++||+|++.+|..                   ++++|+.|||+
T Consensus       195 ~~~DGKp~iv~~~~VNlGiAVdl~~~dGsRgLVVPvIK~Ad~l~f~ef~~-------------------ay~dLV~KAR~  255 (1228)
T PRK12270        195 AEVDGKPTLVTPAHVNLGLAIDLPKKDGSRQLVVPAIKGAETMDFAQFWA-------------------AYEDIVRRARD  255 (1228)
T ss_pred             eccCCCceeeccCCcceEEEEecCCCCCCcceeeccccccccCCHHHHHH-------------------HHHHHHHHHHc
Confidence            8  444  9999999999999999     689999999999999999999                   99999999999


Q ss_pred             CCCCcccccC
Q psy16142        416 GKLQPHEFQV  425 (426)
Q Consensus       416 ~~l~~~e~~~  425 (426)
                      |||+++||+|
T Consensus       256 gKLt~eD~~G  265 (1228)
T PRK12270        256 GKLTADDFQG  265 (1228)
T ss_pred             CCCCHHHhCC
Confidence            9999999998

>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid

Probab=99.61  E-value=3.7e-16  Score=124.13  Aligned_cols=73  Identities=45%  Similarity=0.740  Sum_probs=70.6

Q ss_pred             eEeccCCCCCcccceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEE
Q psy16142         84 RVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCII  157 (426)
Q Consensus        84 ~i~mP~lg~s~d~g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i  157 (426)
                      .+.+|.+|..+..+++.+|++++||.|++||.||+||+||+.++|+||++|+|.++++++|+ .|.+|++|++|
T Consensus         2 ~i~~P~~G~~~~~~~i~~~~v~~G~~V~~G~~l~~iet~K~~~~v~a~~~G~i~~i~v~~G~-~V~~G~~l~~I   74 (74)
T PF00364_consen    2 EIKAPMLGEVMEEGTITKWLVEEGDKVKKGDPLAEIETMKMEMEVEAPVSGIIKEILVEEGD-TVEVGQVLAII   74 (74)
T ss_dssp             EEEESSSSEEEEEEEEEEESSSTTEEESTTSEEEEEESSSEEEEEEBSSSEEEEEESSTTTE-EEETTSEEEEE
T ss_pred             EEECCCCccEEEecceeEEEECCCCEEEcCceEEEEEcCccceEEECCCCEEEEEEEECCCC-EECCCCEEEEC
Confidence            57899999999989999999999999999999999999999999999999999999999999 89999999986

Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....

>PRK14843 dihydrolipoamide acetyltransferase; Provisional

Probab=99.59  E-value=2.1e-16  Score=159.93  Aligned_cols=98  Identities=26%  Similarity=0.348  Sum_probs=87.6

Q ss_pred             ccccchhhhHHHHHHHHHh--------cCCcEEEecCcccccccceeeeCCccchhhhccccccccccccCceE--eccC
Q psy16142         20 FLLYLLPWRWEPLLAGLRK--------KGGTVSISNLGMFGIKNFSAIINPPQACILAVGSLSQRLVREGNDRV--ALPA   89 (426)
Q Consensus        20 ~~l~~i~~e~~~L~~kar~--------~gGtfTIsn~G~~G~~~~tpIInppq~aIlgvg~~~~~p~v~~~~~i--~mP~   89 (426)
                      ++|.+|+.++++|+.+||+        +||||||||+|+||+++|+|||||||+||+|+|++.++|++.++...  ++..
T Consensus       234 ~sl~eIa~~i~~l~~~Ar~~kL~~~d~~GgTfTISNlG~~G~~~~tpIInpPq~aIlgvG~i~~~pv~~~g~i~~r~~m~  313 (347)
T PRK14843        234 MSLSELVVAFKDVIGRTLDGKLAPSELQNSTFTISNLGMFGVQSFGPIINQPNSAILGVSSTIEKPVVVNGEIVIRPIMS  313 (347)
T ss_pred             CCHHHHHHHHHHHHHHHHcCCCCHHHhCCCeEEEeCCCCCcccceeccccCCceEEEecCCcceeeEEECCeEEEEeEEE
Confidence            8999999999999999999        99999999999999999999999999999999999999998765332  5556


Q ss_pred             CCCCcc-----cceeeecccccCCccccCcchh
Q psy16142         90 LSPTME-----MGTIVSWAKKEGDKLNEGDLLA  117 (426)
Q Consensus        90 lg~s~d-----~g~i~~w~v~vGd~Ve~gd~L~  117 (426)
                      |++++|     |+...+|+..+.+.+|.+..|+
T Consensus       314 lsls~DHRviDGa~aa~Fl~~lk~~lE~p~~ll  346 (347)
T PRK14843        314 LGLTIDHRVVDGMAGAKFMKDLKELIETPISML  346 (347)
T ss_pred             EEEecchhhhCcHHHHHHHHHHHHHhcCHHHhh
Confidence            777766     8899999999999999887654

>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional

Probab=99.58  E-value=2.7e-15  Score=150.91  Aligned_cols=77  Identities=30%  Similarity=0.649  Sum_probs=74.0

Q ss_pred             ceEeccCCCCCcccceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEcC
Q psy16142         83 DRVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVEN  160 (426)
Q Consensus        83 ~~i~mP~lg~s~d~g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~  160 (426)
                      .+++||++|.+|++|+|.+|++++||.|++||.|++||+||++++|+||.+|+|.++++++|+ .|.+|++|+.++..
T Consensus         3 ~~~~~p~~~~~~~~g~~~~~~~~~g~~v~~~~~~~~~e~~k~~~~~~a~~~g~~~~~~~~~g~-~v~~g~~l~~i~~~   79 (371)
T PRK14875          3 TPITMPKWGLSMTEGKVAGWLVQEGDEVEKGDELLDVETDKITNEVEAPAAGTLRRQVAQEGE-TLPVGALLAVVADA   79 (371)
T ss_pred             eEEeCCCCCCCCceEEEEEEEcCCCCEeCCCCEEEEEEecceeEEEecCCCeEEEEEEcCCCC-EeCCCCEEEEEecC
Confidence            478999999999999999999999999999999999999999999999999999999999999 89999999999653

>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase

Probab=99.55  E-value=7.9e-16  Score=165.80  Aligned_cols=101  Identities=26%  Similarity=0.280  Sum_probs=89.1

Q ss_pred             ccccchhhhHHHHHHHHHh--------cCCcEEEecCcccccccceeeeCCccchhhhcccccccccccc---Cc--e--
Q psy16142         20 FLLYLLPWRWEPLLAGLRK--------KGGTVSISNLGMFGIKNFSAIINPPQACILAVGSLSQRLVREG---ND--R--   84 (426)
Q Consensus        20 ~~l~~i~~e~~~L~~kar~--------~gGtfTIsn~G~~G~~~~tpIInppq~aIlgvg~~~~~p~v~~---~~--~--   84 (426)
                      ++|.+|+.++++|+.+||+        +||||||||+|+||+++|+|||||||+||||+|++.++|++.+   +.  .  
T Consensus       469 ~sl~~ia~~i~~l~~kAr~gkL~p~e~~GgTfTISNlG~~G~~~~tpIIn~PqvaILgvG~i~~~pv~~~~~~g~~~~~~  548 (590)
T TIGR02927       469 LSLGEIAKAIADIAARARNGKLKPDDLAGGTFTITNIGSEGALFDTPILIPPQAAILGTGAIVKRPRVITDEDGIDSIAI  548 (590)
T ss_pred             CCHHHHHHHHHHHHHHHHcCCCChHHhCCCeEEEECCCCCCccceeceecCCCeEEEEcccceEEEEEeccCCCcccEEE
Confidence            8999999999999999999        9999999999999999999999999999999999999998852   21  1  


Q ss_pred             EeccCCCCCcc-----cceeeecccccCCccccCcchhhhh
Q psy16142         85 VALPALSPTME-----MGTIVSWAKKEGDKLNEGDLLAEIE  120 (426)
Q Consensus        85 i~mP~lg~s~d-----~g~i~~w~v~vGd~Ve~gd~L~~ve  120 (426)
                      .+|..|++++|     |+...+|+..+.++++.+..+..+|
T Consensus       549 ~~~m~lsls~DHRviDGa~aa~Fl~~lk~~LE~~~~~~~~~  589 (590)
T TIGR02927       549 RQMCHLPLTYDHQLIDGADAGRFLTTIKDRLEEAAFEADLE  589 (590)
T ss_pred             EeeEEEeeeccchhcCcHHHHHHHHHHHHHHhCcccccccC
Confidence            25556777766     8889999999999999987776654

This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).

>PRK11857 dihydrolipoamide acetyltransferase; Reviewed

Probab=99.55  E-value=7.7e-16  Score=153.41  Aligned_cols=98  Identities=22%  Similarity=0.335  Sum_probs=87.4

Q ss_pred             ccccchhhhHHHHHHHHHh--------cCCcEEEecCcccccccceeeeCCccchhhhccccccccccccCceE--eccC
Q psy16142         20 FLLYLLPWRWEPLLAGLRK--------KGGTVSISNLGMFGIKNFSAIINPPQACILAVGSLSQRLVREGNDRV--ALPA   89 (426)
Q Consensus        20 ~~l~~i~~e~~~L~~kar~--------~gGtfTIsn~G~~G~~~~tpIInppq~aIlgvg~~~~~p~v~~~~~i--~mP~   89 (426)
                      ++|.+|++++++|..++|+        +||||||||+|++|+.+++|||||||+||+|+|++.++|++.++...  ++..
T Consensus       192 ~sl~eIa~~i~~l~~~Ar~~kL~~~dl~ggTfTISNlG~~G~~~~tpiIn~pq~aILgvG~i~~~pvv~~g~i~~r~~m~  271 (306)
T PRK11857        192 LSIVEIAKEISRLAKAARERKIKPDEMKGGSFTITNYGSVGSLYGVPVINYPELAIAGVGAIIDKAIVKNGQIVAGKVMH  271 (306)
T ss_pred             CCHHHHHHHHHHHHHHHHcCCCChhhcCCccEEEeCCCCCCccceecccCCCccceeecccceEEeEEECCEEEEeeeeE
Confidence            8999999999999999999        99999999999999999999999999999999999999998665433  4445


Q ss_pred             CCCCcc-----cceeeecccccCCccccCcchh
Q psy16142         90 LSPTME-----MGTIVSWAKKEGDKLNEGDLLA  117 (426)
Q Consensus        90 lg~s~d-----~g~i~~w~v~vGd~Ve~gd~L~  117 (426)
                      |++++|     |+...+|+....+.+|.++.|.
T Consensus       272 lslt~DHRviDGa~aa~Fl~~lk~~LE~p~~l~  304 (306)
T PRK11857        272 LTVAADHRWIDGATIGRFASRVKELLEKPEILG  304 (306)
T ss_pred             EeEecchhhhCcHHHHHHHHHHHHHhcCHHhhh
Confidence            666666     8899999999999999988664

>PLN02226 2-oxoglutarate dehydrogenase E2 component

Probab=99.55  E-value=8.1e-16  Score=159.84  Aligned_cols=98  Identities=23%  Similarity=0.316  Sum_probs=88.0

Q ss_pred             ccccchhhhHHHHHHHHHh--------cCCcEEEecCcccccccceeeeCCccchhhhccccccccccccCceE--eccC
Q psy16142         20 FLLYLLPWRWEPLLAGLRK--------KGGTVSISNLGMFGIKNFSAIINPPQACILAVGSLSQRLVREGNDRV--ALPA   89 (426)
Q Consensus        20 ~~l~~i~~e~~~L~~kar~--------~gGtfTIsn~G~~G~~~~tpIInppq~aIlgvg~~~~~p~v~~~~~i--~mP~   89 (426)
                      ++|.+|++++++|+.++|+        +||||||||+|++|+.+|+|||||||+||+|+|++.++|++.++...  ++..
T Consensus       348 ~sl~eIa~ei~~L~~kAR~gkL~~~dl~GGTfTISNlG~~Gv~~ftPIInpPqvAILgvG~i~~~pvv~~g~i~~r~~m~  427 (463)
T PLN02226        348 MNFAEIEKTINGLAKKANEGTISIDEMAGGSFTVSNGGVYGSLISTPIINPPQSAILGMHSIVSRPMVVGGSVVPRPMMY  427 (463)
T ss_pred             CCHHHHHHHHHHHHHHHHcCCCCHHHhCCCeEEEECCCcccccceeccccCCcEEEEEcccceEEEEEECCEEEEEeEEE
Confidence            8999999999999999998        99999999999999999999999999999999999999998765433  4555


Q ss_pred             CCCCcc-----cceeeecccccCCccccCcchh
Q psy16142         90 LSPTME-----MGTIVSWAKKEGDKLNEGDLLA  117 (426)
Q Consensus        90 lg~s~d-----~g~i~~w~v~vGd~Ve~gd~L~  117 (426)
                      |++++|     |+...+|+..+.+.+|.++.|+
T Consensus       428 lsLs~DHRVIDGa~aA~FL~~lk~~LE~P~~LL  460 (463)
T PLN02226        428 VALTYDHRLIDGREAVYFLRRVKDVVEDPQRLL  460 (463)
T ss_pred             EeEecchhhhCcHHHHHHHHHHHHHhcCHHHHh
Confidence            677766     8899999999999999988654

>PRK06748 hypothetical protein; Validated

Probab=99.54  E-value=7.3e-15  Score=118.77  Aligned_cols=62  Identities=26%  Similarity=0.348  Sum_probs=60.2

Q ss_pred             ceeeecccccCCccccCcchhhhhc-ccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEc
Q psy16142         97 GTIVSWAKKEGDKLNEGDLLAEIET-DKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVE  159 (426)
Q Consensus        97 g~i~~w~v~vGd~Ve~gd~L~~vet-dK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~  159 (426)
                      |++.+|++++||.|++||.|++||| ||+.++|+||.+|+|.++++++|+ .|++|++|++|++
T Consensus        13 G~I~~w~vk~GD~V~~gd~l~~IETMdK~~~ei~Ap~~G~v~~i~v~~Gd-~V~vG~~la~I~~   75 (83)
T PRK06748         13 GKVEKLFVRESSYVYEWEKLALIETIDKQKVEIKVGISGYIESLEVVEGQ-AIADQKLLITVRD   75 (83)
T ss_pred             EEEEEEEeCCCCEECCCCEEEEEEcCCCceEEEecCCCEEEEEEEeCCCC-EECCCCEEEEEEC
Confidence            9999999999999999999999999 899999999999999999999999 8999999999964

>KOG0559|consensus

Probab=99.53  E-value=1.4e-15  Score=149.87  Aligned_cols=98  Identities=27%  Similarity=0.331  Sum_probs=90.0

Q ss_pred             ccccchhhhHHHHHHHHHh--------cCCcEEEecCcccccccceeeeCCccchhhhccccccccccccCceE--eccC
Q psy16142         20 FLLYLLPWRWEPLLAGLRK--------KGGTVSISNLGMFGIKNFSAIINPPQACILAVGSLSQRLVREGNDRV--ALPA   89 (426)
Q Consensus        20 ~~l~~i~~e~~~L~~kar~--------~gGtfTIsn~G~~G~~~~tpIInppq~aIlgvg~~~~~p~v~~~~~i--~mP~   89 (426)
                      +++.+|..++..|..|||+        .||||||||.|.||+.|.||||||||.+|||+..+..+|.+.++..+  +|.+
T Consensus       342 Mn~adIE~~i~~L~~KAr~g~laiedM~gGTFTISNGGVfGSL~gTPIINpPQsAILGmHgI~eRPv~v~G~Vv~RPMMY  421 (457)
T KOG0559|consen  342 MNFADIEKTIAGLGKKARDGKLAIEDMAGGTFTISNGGVFGSLYGTPIINPPQSAILGMHGIKERPVVVGGQVVPRPMMY  421 (457)
T ss_pred             ccHHHHHHHHHHHHHhhccCceeeeeccCceEEEeCCcEeeeeccCcccCCchhhhhhcccccccceeeCCEeeeccceE
Confidence            8899999999999999999        99999999999999999999999999999999999999998887665  5667


Q ss_pred             CCCCcc-----cceeeecccccCCccccCcchh
Q psy16142         90 LSPTME-----MGTIVSWAKKEGDKLNEGDLLA  117 (426)
Q Consensus        90 lg~s~d-----~g~i~~w~v~vGd~Ve~gd~L~  117 (426)
                      +.++||     |-+.+.|++++.+.||.++.|+
T Consensus       422 vALTYDHRliDGREAVtFLr~iK~~VEDP~~ml  454 (457)
T KOG0559|consen  422 VALTYDHRLIDGREAVTFLRKIKEAVEDPRKML  454 (457)
T ss_pred             EEeeccccccccHHHHHHHHHHHHHhhCHHHHh
Confidence            788877     6677899999999999998775

>PF00198 2-oxoacid_dh: 2-oxoacid dehydrogenases acyltransferase (catalytic domain); InterPro: IPR001078 This domain is found in the lipoamide acyltransferase component of the branched-chain alpha-keto acid dehydrogenase complex 2

Probab=99.53  E-value=7.4e-16  Score=148.04  Aligned_cols=98  Identities=36%  Similarity=0.519  Sum_probs=80.2

Q ss_pred             ccccchhhhHHHHHHHHHh--------cCCcEEEecCcccccccceeeeCCccchhhhccccccccccccCceE--eccC
Q psy16142         20 FLLYLLPWRWEPLLAGLRK--------KGGTVSISNLGMFGIKNFSAIINPPQACILAVGSLSQRLVREGNDRV--ALPA   89 (426)
Q Consensus        20 ~~l~~i~~e~~~L~~kar~--------~gGtfTIsn~G~~G~~~~tpIInppq~aIlgvg~~~~~p~v~~~~~i--~mP~   89 (426)
                      ++|.+|++++++|+.+||+        +||||||||+|++|+.+|+|||||||+||+++|++.++|++.++...  ++..
T Consensus       118 ~sl~eIa~e~~~l~~~ar~g~l~~~d~~g~TftisNlG~~g~~~~~pii~~pq~ail~vG~i~~~p~~~~~~~~~~~~~~  197 (231)
T PF00198_consen  118 KSLAEIAKELRDLAERAREGKLTPEDLQGGTFTISNLGMFGVESFTPIINPPQVAILGVGAIRDRPVVEDGEVVVRPVMN  197 (231)
T ss_dssp             S-HHHHHHHHHHHHHHHHTT---GGGGSS-SEEEEEGGGTT-SCEE----TTSSEEEEEEEEEEEEEEETTCEEEEEEEE
T ss_pred             ccHHHHHHHHhhhhccchhhhhhhhhhhccceeeeecCCCCcceeEccCCcccceEEEecceEEEEEEEeccceeeEEEE
Confidence            8999999999999999999        89999999999999999999999999999999999999998766543  3445


Q ss_pred             CCCCcc-----cceeeecccccCCccccCcchh
Q psy16142         90 LSPTME-----MGTIVSWAKKEGDKLNEGDLLA  117 (426)
Q Consensus        90 lg~s~d-----~g~i~~w~v~vGd~Ve~gd~L~  117 (426)
                      +++++|     |+...+|+..+.+.++.++.|+
T Consensus       198 lslt~DHRvidG~~aa~Fl~~l~~~le~p~~ll  230 (231)
T PF00198_consen  198 LSLTFDHRVIDGAEAARFLKDLKELLENPERLL  230 (231)
T ss_dssp             EEEEEETTTS-HHHHHHHHHHHHHHHHSTHHHC
T ss_pred             eEEeccceEEcHHHHHHHHHHHHHHHhCHHHHh
Confidence            555555     8889999999999999887664

3.1 from EC, which catalyses the overall conversion of alpha-keto acids to acyl-CoA and carbon dioxide []. It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3). The domain is also found in the dihydrolipoamide succinyltransferase component of the 2-oxoglutarate dehydrogenase complex 2.3.1.61 from EC. These proteins contain one to three copies of a lipoyl binding domain followed by the catalytic domain.; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1EAF_A 1EAA_A 1DPD_A 1EAE_A 1DPC_A 1EAB_A 1DPB_A 1EAC_A 1EAD_A 2II5_H ....

>PTZ00144 dihydrolipoamide succinyltransferase; Provisional

Probab=99.51  E-value=2.4e-15  Score=155.17  Aligned_cols=98  Identities=31%  Similarity=0.374  Sum_probs=87.1

Q ss_pred             ccccchhhhHHHHHHHHHh--------cCCcEEEecCcccccccceeeeCCccchhhhccccccccccccCceE--eccC
Q psy16142         20 FLLYLLPWRWEPLLAGLRK--------KGGTVSISNLGMFGIKNFSAIINPPQACILAVGSLSQRLVREGNDRV--ALPA   89 (426)
Q Consensus        20 ~~l~~i~~e~~~L~~kar~--------~gGtfTIsn~G~~G~~~~tpIInppq~aIlgvg~~~~~p~v~~~~~i--~mP~   89 (426)
                      ++|.+|++++++|+.++|+        +||||||||+|++|+.+|+|||||||+||+|+|++.++|++.++...  ++..
T Consensus       303 ~sl~eIa~ei~~L~~~ar~g~L~~~e~~GgTfTISNlG~~G~~~~tpIInpPq~aILgvG~i~~~pvv~~g~i~~r~~m~  382 (418)
T PTZ00144        303 KSFAEIEKELADLAEKARNNKLTLEDMTGGTFTISNGGVFGSLMGTPIINPPQSAILGMHAIKKRPVVVGNEIVIRPIMY  382 (418)
T ss_pred             CCHHHHHHHHHHHHHHHHcCCCCHHHhCCceEEEECCCCCCcceeeeeecCCceEEEecccceeEeEEECCEEEEEeEEE
Confidence            8999999999999999999        99999999999999999999999999999999999999998765432  4445


Q ss_pred             CCCCcc-----cceeeecccccCCccccCcchh
Q psy16142         90 LSPTME-----MGTIVSWAKKEGDKLNEGDLLA  117 (426)
Q Consensus        90 lg~s~d-----~g~i~~w~v~vGd~Ve~gd~L~  117 (426)
                      |++++|     |+...+|+....+.+|.++.|+
T Consensus       383 lsLs~DHRviDGa~AA~FL~~lk~~LE~P~~ll  415 (418)
T PTZ00144        383 LALTYDHRLIDGRDAVTFLKKIKDLIEDPARML  415 (418)
T ss_pred             EEEecchhhhChHHHHHHHHHHHHHhcCHHHHh
Confidence            666665     8899999999999999988654

>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component)

Probab=99.50  E-value=2.6e-15  Score=154.92  Aligned_cols=98  Identities=24%  Similarity=0.292  Sum_probs=87.0

Q ss_pred             ccccchhhhHHHHHHHHHh--------cCCcEEEecCcccccccceeeeCCccchhhhccccccccccccCceE--eccC
Q psy16142         20 FLLYLLPWRWEPLLAGLRK--------KGGTVSISNLGMFGIKNFSAIINPPQACILAVGSLSQRLVREGNDRV--ALPA   89 (426)
Q Consensus        20 ~~l~~i~~e~~~L~~kar~--------~gGtfTIsn~G~~G~~~~tpIInppq~aIlgvg~~~~~p~v~~~~~i--~mP~   89 (426)
                      ++|.+|++++++|+.++|+        +||||||||+|+||+.+|+|||||||+||||+|++.++|++.++...  ++..
T Consensus       288 ~sl~eIa~~~~~l~~~ar~gkL~~~d~~ggTfTISNlG~~G~~~~tpiin~pq~aILgvG~i~~~pv~~~g~i~~r~~m~  367 (403)
T TIGR01347       288 MSFADIEKEIADLGKKARDGKLTLEDMTGGTFTITNGGVFGSLMSTPIINPPQSAILGMHGIKERPVAVNGQIEIRPMMY  367 (403)
T ss_pred             CCHHHHHHHHHHHHHHHHcCCCChhhcCCceEEEecCCcCcccceeccccCCceEEEecccceEEEEEECCeEEEEEEEE
Confidence            8999999999999999999        89999999999999999999999999999999999999998665332  4445


Q ss_pred             CCCCcc-----cceeeecccccCCccccCcchh
Q psy16142         90 LSPTME-----MGTIVSWAKKEGDKLNEGDLLA  117 (426)
Q Consensus        90 lg~s~d-----~g~i~~w~v~vGd~Ve~gd~L~  117 (426)
                      |++++|     |+...+|+....+.++.++.|+
T Consensus       368 lsLt~DHRviDGa~aa~Fl~~l~~~le~p~~ll  400 (403)
T TIGR01347       368 LALSYDHRLIDGKEAVTFLVTIKELLEDPRRLL  400 (403)
T ss_pred             EEEEecchhhChHHHHHHHHHHHHHhcCHHHHH
Confidence            666666     8899999999999999988664

dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.

>PRK05704 dihydrolipoamide succinyltransferase; Validated

Probab=99.50  E-value=3e-15  Score=154.67  Aligned_cols=98  Identities=26%  Similarity=0.340  Sum_probs=87.0

Q ss_pred             ccccchhhhHHHHHHHHHh--------cCCcEEEecCcccccccceeeeCCccchhhhccccccccccccCceE--eccC
Q psy16142         20 FLLYLLPWRWEPLLAGLRK--------KGGTVSISNLGMFGIKNFSAIINPPQACILAVGSLSQRLVREGNDRV--ALPA   89 (426)
Q Consensus        20 ~~l~~i~~e~~~L~~kar~--------~gGtfTIsn~G~~G~~~~tpIInppq~aIlgvg~~~~~p~v~~~~~i--~mP~   89 (426)
                      ++|.+|++++++|+.+||+        +||||||||+|++|+.+|+|||||||+||||+|++.++|++.++...  ++..
T Consensus       292 ~sl~eIa~~~~~l~~~ar~g~L~~~d~~ggTfTiSNlG~~G~~~~tpiIn~pq~aILgvG~i~~~pv~~~g~i~~r~~~~  371 (407)
T PRK05704        292 LSFAEIEKKIAELAKKARDGKLSIEELTGGTFTITNGGVFGSLMSTPIINPPQSAILGMHKIKERPVAVNGQIVIRPMMY  371 (407)
T ss_pred             CCHHHHHHHHHHHHHHHHcCCCChHHcCCceEEEecCCcccccceeccccCCcEEEEEcccceEEeEEECCEEEEEEEEE
Confidence            8999999999999999999        99999999999999999999999999999999999999988655332  4445


Q ss_pred             CCCCcc-----cceeeecccccCCccccCcchh
Q psy16142         90 LSPTME-----MGTIVSWAKKEGDKLNEGDLLA  117 (426)
Q Consensus        90 lg~s~d-----~g~i~~w~v~vGd~Ve~gd~L~  117 (426)
                      |++++|     |+...+|+....+.++.++.|+
T Consensus       372 lsls~DHRviDGa~aa~Fl~~l~~~le~p~~ll  404 (407)
T PRK05704        372 LALSYDHRIIDGKEAVGFLVTIKELLEDPERLL  404 (407)
T ss_pred             EEEEechhhhCcHHHHHHHHHHHHHhhCHHHHh
Confidence            666665     8899999999999999988664

>PLN02528 2-oxoisovalerate dehydrogenase E2 component

Probab=99.50  E-value=3e-15  Score=155.12  Aligned_cols=98  Identities=19%  Similarity=0.276  Sum_probs=87.1

Q ss_pred             ccccchhhhHHHHHHHHHh--------cCCcEEEecCcccccccceeeeCCccchhhhcccccccccccc-Cce--Eecc
Q psy16142         20 FLLYLLPWRWEPLLAGLRK--------KGGTVSISNLGMFGIKNFSAIINPPQACILAVGSLSQRLVREG-NDR--VALP   88 (426)
Q Consensus        20 ~~l~~i~~e~~~L~~kar~--------~gGtfTIsn~G~~G~~~~tpIInppq~aIlgvg~~~~~p~v~~-~~~--i~mP   88 (426)
                      ++|.+|++++++|+.++|+        +||||||||+|++|+.+|+|||||||+||||+|++.++|++.+ +..  .++.
T Consensus       299 ~sl~eI~~~~~~l~~~ar~gkL~~~dl~ggTftiSNlG~~G~~~~tpIin~pq~aIlgvG~i~~~pv~~~~g~i~~r~~m  378 (416)
T PLN02528        299 LSLLEITKELSRLQHLAAENKLNPEDITGGTITLSNIGAIGGKFGSPVLNLPEVAIIALGRIQKVPRFVDDGNVYPASIM  378 (416)
T ss_pred             CCHHHHHHHHHHHHHHHHcCCCCHHHhCCceEEEeCCccccCCceECcccCCceEEEEcccceEEeEEeCCCcEEEEeEE
Confidence            8999999999999999998        9999999999999999999999999999999999999998853 322  2555


Q ss_pred             CCCCCcc-----cceeeecccccCCccccCcchh
Q psy16142         89 ALSPTME-----MGTIVSWAKKEGDKLNEGDLLA  117 (426)
Q Consensus        89 ~lg~s~d-----~g~i~~w~v~vGd~Ve~gd~L~  117 (426)
                      .|++++|     |+...+|++...+.++.+..|+
T Consensus       379 ~lslt~DHRviDGa~aa~Fl~~lk~~le~P~~ll  412 (416)
T PLN02528        379 TVTIGADHRVLDGATVARFCNEWKSYVEKPELLM  412 (416)
T ss_pred             EEeEeccchhcCcHHHHHHHHHHHHHHhCHHHHH
Confidence            6677766     8888999999999999988765

>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

Probab=99.48  E-value=6.8e-15  Score=153.33  Aligned_cols=98  Identities=35%  Similarity=0.491  Sum_probs=87.1

Q ss_pred             ccccchhhhHHHHHHHHHh--------cCCcEEEecCcccccccceeeeCCccchhhhccccccccccccCc---e--Ee
Q psy16142         20 FLLYLLPWRWEPLLAGLRK--------KGGTVSISNLGMFGIKNFSAIINPPQACILAVGSLSQRLVREGND---R--VA   86 (426)
Q Consensus        20 ~~l~~i~~e~~~L~~kar~--------~gGtfTIsn~G~~G~~~~tpIInppq~aIlgvg~~~~~p~v~~~~---~--i~   86 (426)
                      ++|.+|++++++|+.++|+        +||||||||+|++|+.+|+|||||||+||||+|++.++|++.++.   .  .+
T Consensus       319 ~sl~eia~~i~~l~~~ar~~~L~~~d~~ggTfTISNlG~~G~~~~tpiin~pq~aIlgvG~i~~~pv~~~~~~~~i~~~~  398 (435)
T TIGR01349       319 KGLSTISNEIKDLAKRARNNKLKPEEFQGGTFTISNLGMFGIKDFTAIINPPQACILAVGAVEDVAVVDNDEEKGFAVAS  398 (435)
T ss_pred             CCHHHHHHHHHHHHHHHhcCCCChhhcCCCeEEEecCCccCccceECccCCCceEEEEcccceEEeEEeCCccceeEEee
Confidence            8999999999999999999        899999999999999999999999999999999999999885543   2  25


Q ss_pred             ccCCCCCcc-----cceeeecccccCCccccCcchh
Q psy16142         87 LPALSPTME-----MGTIVSWAKKEGDKLNEGDLLA  117 (426)
Q Consensus        87 mP~lg~s~d-----~g~i~~w~v~vGd~Ve~gd~L~  117 (426)
                      |..|++++|     |+...+|+..+.+.+|.++.|+
T Consensus       399 ~m~lsls~DHRviDGa~aa~Fl~~lk~~lE~p~~ll  434 (435)
T TIGR01349       399 IMSVTLSCDHRVIDGAVGAEFLKSFKKYLENPIEML  434 (435)
T ss_pred             eEEEeEeecchhhCcHHHHHHHHHHHHHHhCHHhhh
Confidence            556777766     8889999999999999887654

This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.

>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex

Probab=99.47  E-value=9e-15  Score=154.86  Aligned_cols=98  Identities=32%  Similarity=0.471  Sum_probs=86.5

Q ss_pred             ccccchhhhHHHHHHHHHh--------cCCcEEEecCc-ccccccceeeeCCccchhhhccccccccccc--cCce--Ee
Q psy16142         20 FLLYLLPWRWEPLLAGLRK--------KGGTVSISNLG-MFGIKNFSAIINPPQACILAVGSLSQRLVRE--GNDR--VA   86 (426)
Q Consensus        20 ~~l~~i~~e~~~L~~kar~--------~gGtfTIsn~G-~~G~~~~tpIInppq~aIlgvg~~~~~p~v~--~~~~--i~   86 (426)
                      ++|.+|++++++|+.+||+        +||||||||+| +||+.+|||||||||+||||+|++.++|++.  ++..  .+
T Consensus       423 ~sl~eIa~ei~~L~~kAr~~kL~~~dl~GGTfTISNlGg~~G~~~ftpIInpPqvaILgvG~i~~~pvv~~~~g~i~~r~  502 (539)
T PLN02744        423 KGLSTIAEEVKQLAQKARENSLKPEDYEGGTFTVSNLGGPFGIKQFCAIINPPQSAILAVGSAEKRVIPGSGPDQYNFAS  502 (539)
T ss_pred             CCHHHHHHHHHHHHHHHHcCCCChhhcCCceEEEeCCCcccccceeeccccCCcEEEEEcccceeEeEEeccCCeEEEee
Confidence            8999999999999999998        99999999998 8999999999999999999999999998863  4322  25


Q ss_pred             ccCCCCCcc-----cceeeecccccCCccccCcchh
Q psy16142         87 LPALSPTME-----MGTIVSWAKKEGDKLNEGDLLA  117 (426)
Q Consensus        87 mP~lg~s~d-----~g~i~~w~v~vGd~Ve~gd~L~  117 (426)
                      +..|++++|     |+...+|+....+.+|.++.|+
T Consensus       503 ~m~lsLs~DHRvIDGa~AA~FL~~lk~~LE~P~~ll  538 (539)
T PLN02744        503 FMSVTLSCDHRVIDGAIGAEWLKAFKGYIENPESML  538 (539)
T ss_pred             eeEEeEecchhhhCcHHHHHHHHHHHHHhcCHHhhh
Confidence            556777766     8899999999999999988664

>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

Probab=99.46  E-value=1e-14  Score=156.07  Aligned_cols=98  Identities=22%  Similarity=0.263  Sum_probs=86.9

Q ss_pred             ccccchhhhHHHHHHHHHh--------cCCcEEEecCcccccccceeeeCCccchhhhccccccccccccCceE--eccC
Q psy16142         20 FLLYLLPWRWEPLLAGLRK--------KGGTVSISNLGMFGIKNFSAIINPPQACILAVGSLSQRLVREGNDRV--ALPA   89 (426)
Q Consensus        20 ~~l~~i~~e~~~L~~kar~--------~gGtfTIsn~G~~G~~~~tpIInppq~aIlgvg~~~~~p~v~~~~~i--~mP~   89 (426)
                      ++|.+|++++++|+.+||+        +||||||||+|+||+.+|+|||||||+|||++|+++++|++.++...  .+..
T Consensus       433 ~sl~~ia~~~~~l~~~ar~g~L~~~d~~ggTfTiSNlG~~G~~~~~piin~Pq~aIl~vg~~~~~p~~~~~~~~~~~~m~  512 (546)
T TIGR01348       433 KGITELALELSDLAKKARDGKLTPDEMQGACFTISSLGGIGGTAFTPIVNAPEVAILGVSKSGMEPVWNGKEFEPRLMLP  512 (546)
T ss_pred             CCHHHHHHHHHHHHHHHhcCCCCHHHhCCCeEEEeCCCCCCCcceECCCCCCceEEEEcccceEEeEEECCEEEEEEEEE
Confidence            8999999999999999999        89999999999999999999999999999999999999988654322  4555


Q ss_pred             CCCCcc-----cceeeecccccCCccccCcchh
Q psy16142         90 LSPTME-----MGTIVSWAKKEGDKLNEGDLLA  117 (426)
Q Consensus        90 lg~s~d-----~g~i~~w~v~vGd~Ve~gd~L~  117 (426)
                      |++++|     |+...+|+..+.+.+|.++.|+
T Consensus       513 ltls~DHRviDGa~aa~Fl~~~~~~le~P~~ll  545 (546)
T TIGR01348       513 LSLSYDHRVIDGADAARFTTYICESLADIRRLL  545 (546)
T ss_pred             EeEeccchhcChHHHHHHHHHHHHHHhCHHhhh
Confidence            666666     8888999999999999887664

This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.

>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]

Probab=99.40  E-value=2.1e-13  Score=121.38  Aligned_cols=61  Identities=33%  Similarity=0.465  Sum_probs=59.5

Q ss_pred             ceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEE
Q psy16142         97 GTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIV  158 (426)
Q Consensus        97 g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~  158 (426)
                      |++.+.++++||.|++||.||+||+|||+++|+||.+|+|.+|++++|+ .|..|++|+.|+
T Consensus        79 Gtv~~~~V~vGd~V~~Gq~l~IiEAMKmeneI~A~~~G~V~~Ilv~~G~-~Ve~G~~L~~I~  139 (140)
T COG0511          79 GTVYKPFVEVGDTVKAGQTLAIIEAMKMENEIEAPADGVVKEILVKNGD-PVEYGDPLAVIE  139 (140)
T ss_pred             eEEEEEeeccCCEEcCCCEEEEEEeeeccceecCCCCcEEEEEEecCCC-ccCCCCEEEEec
Confidence            8899999999999999999999999999999999999999999999999 899999999985

>PRK11892 pyruvate dehydrogenase subunit beta; Provisional

Probab=99.37  E-value=2e-12  Score=135.73  Aligned_cols=83  Identities=49%  Similarity=0.822  Sum_probs=76.3

Q ss_pred             ceEeccCCCCCcccceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEcCCc
Q psy16142         83 DRVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENES  162 (426)
Q Consensus        83 ~~i~mP~lg~s~d~g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~~  162 (426)
                      ..+.||.++.+++++++.+|++++||.|+.||.|++|||||++++++||.+|+|.++++++|++.|++|++|++|+++++
T Consensus         3 ~ei~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~iETdKa~~ev~A~~~G~v~~i~v~~G~~~V~vG~~i~~i~~~~~   82 (464)
T PRK11892          3 IEILMPALSPTMEEGTLAKWLKKEGDKVKSGDVIAEIETDKATMEVEAVDEGTLGKILVPEGTEGVKVNTPIAVLLEEGE   82 (464)
T ss_pred             cceecCCCCCCcceeEEEEEEecCCCEecCCCeEEEEEecceeeeecCCCceEEEEEEecCCCcEeCCCCEEEEEccCCC
Confidence            36889999999999999999999999999999999999999999999999999999999999526999999999987655


Q ss_pred             chh
Q psy16142        163 DVA  165 (426)
Q Consensus       163 ~~~  165 (426)
                      +..
T Consensus        83 ~~~   85 (464)
T PRK11892         83 SAS   85 (464)
T ss_pred             ccc
Confidence            433

>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional

Probab=99.36  E-value=7.5e-13  Score=104.22  Aligned_cols=61  Identities=25%  Similarity=0.451  Sum_probs=59.3

Q ss_pred             ceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEE
Q psy16142         97 GTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIV  158 (426)
Q Consensus        97 g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~  158 (426)
                      |++.+|++++||.|++||.|+++|+||++++|.||.+|+|.++++++|+ .|..|++|++|+
T Consensus        11 G~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~I~a~~~G~V~~i~v~~G~-~V~~G~~l~~i~   71 (71)
T PRK05889         11 ASVLEVVVNEGDQIGKGDTLVLLESMKMEIPVLAEVAGTVSKVSVSVGD-VIQAGDLIAVIS   71 (71)
T ss_pred             EEEEEEEeCCCCEECCCCEEEEEEeccceeEEeCCCCEEEEEEEeCCCC-EECCCCEEEEEC
Confidence            8999999999999999999999999999999999999999999999999 899999999883

>KOG0558|consensus

Probab=99.32  E-value=3.8e-13  Score=132.23  Aligned_cols=98  Identities=20%  Similarity=0.282  Sum_probs=86.9

Q ss_pred             ccccchhhhHHHHHHHHHh--------cCCcEEEecCcccccccceeeeCCccchhhhccccccccccccCceE------
Q psy16142         20 FLLYLLPWRWEPLLAGLRK--------KGGTVSISNLGMFGIKNFSAIINPPQACILAVGSLSQRLVREGNDRV------   85 (426)
Q Consensus        20 ~~l~~i~~e~~~L~~kar~--------~gGtfTIsn~G~~G~~~~tpIInppq~aIlgvg~~~~~p~v~~~~~i------   85 (426)
                      .+|+||++++++|....+.        .||||||||+|.+|++|..|+|+|||++|.++|++...|.+....++      
T Consensus       357 ~si~eIakeLnrLq~~g~~~qls~~D~t~GTftLSNIG~IGGtf~~P~i~~PeVAIgAlGrie~vPrFnkk~~V~~a~IM  436 (474)
T KOG0558|consen  357 LSIFEIAKELNRLQELGANGQLSPEDLTGGTFTLSNIGAIGGTFASPVIMPPEVAIGALGRIEKVPRFNKKGEVYPASIM  436 (474)
T ss_pred             hhHHHHHHHHHHHHHhhhcCCcChhhccCceEEeeecccccccccCcccccchhhhhhccccccccccCCCCCEEEeEEE
Confidence            8999999999999999988        99999999999999999999999999999999999999999765443      


Q ss_pred             --eccCCCCCcccceeeecccccCCccccCcchh
Q psy16142         86 --ALPALSPTMEMGTIVSWAKKEGDKLNEGDLLA  117 (426)
Q Consensus        86 --~mP~lg~s~d~g~i~~w~v~vGd~Ve~gd~L~  117 (426)
                        .....+.-+||+++.+|......++|.+..++
T Consensus       437 ~VswsADHRViDGaTmarFsn~WK~YlE~Pa~ml  470 (474)
T KOG0558|consen  437 MVSWSADHRVIDGATMARFSNQWKEYLENPALML  470 (474)
T ss_pred             EEEeecCceeeccHHHHHHHHHHHHHhhCHHHHh
Confidence              22344555779999999999999999988765

>PF02817 E3_binding: e3 binding domain; InterPro: IPR004167 A small domain of the E2 subunit of 2-oxo-acid dehydrogenases that is responsible for the binding of the E3 subunit

Probab=99.31  E-value=1.4e-12  Score=90.68  Aligned_cols=38  Identities=50%  Similarity=0.721  Sum_probs=33.9

Q ss_pred             ccccChHHHHHHHHcCCCCcCccCCCCCCCcccchhhhh
Q psy16142        220 RVYASPLAKRLAAEKGLDLSSIGAGSGLFGSITSADLSK  258 (426)
Q Consensus       220 ~~~asP~aR~lA~e~gIDl~~v~~gtG~~GrI~~~DV~~  258 (426)
                      ++.+||+||+||+|+|||+++| .|||++|||+++||++
T Consensus         2 ~i~asP~ar~la~e~gidl~~v-~gtG~~GrI~k~Dv~a   39 (39)
T PF02817_consen    2 RIKASPAARKLAAELGIDLSQV-KGTGPGGRITKEDVLA   39 (39)
T ss_dssp             SCCCSHHHHHHHHHTT--GGGS-SSSSTTSBBCHHHHHH
T ss_pred             CcccCHHHHHHHHHcCCCcccc-cccCCCCcEeHHHhhC
Confidence            4678999999999999999999 9999999999999984

Proteins containing this domain include the branched-chain alpha-keto acid dehydrogenase complex of bacteria, which catalyses the overall conversion of alpha-keto acids to acyl-CoA and carbon dioxide; and the E-3 binding protein of eukaryotic pyruvate dehydrogenase.; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1BBL_A 1W4H_A 1BAL_A 2WXC_A 2BTH_A 2BTG_A 2CYU_A 2EQ7_C 2EQ8_C 3RNM_E ....

>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]

Probab=99.31  E-value=5.6e-13  Score=137.77  Aligned_cols=98  Identities=33%  Similarity=0.437  Sum_probs=87.6

Q ss_pred             ccccchhhhHHHHHHHHHh--------cCCcEEEecCcccccccceeeeCCccchhhhccccccccccccCce--EeccC
Q psy16142         20 FLLYLLPWRWEPLLAGLRK--------KGGTVSISNLGMFGIKNFSAIINPPQACILAVGSLSQRLVREGNDR--VALPA   89 (426)
Q Consensus        20 ~~l~~i~~e~~~L~~kar~--------~gGtfTIsn~G~~G~~~~tpIInppq~aIlgvg~~~~~p~v~~~~~--i~mP~   89 (426)
                      +++.+|..++.+|+.++|+        +||||||||+|++|+.+|+||||+||++|||+|.+..+|.+.++..  .+|..
T Consensus       290 ~~~~~i~~~i~~la~~aR~~kl~~~e~~ggtftisn~G~~g~~~~tpiin~Pq~aILgv~~~~~rpv~~~~~i~~~~mm~  369 (404)
T COG0508         290 KSLAEIAKEIKDLAKKARDGKLTPEEMQGGTFTISNLGMFGSLMFTPIINPPQVAILGVGAIEERPVVVGGEIVVRPMMY  369 (404)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCcCHHHhCCceEEeecCCccccceecccccChhHheeeccccccCceEecCceeeEeeEe
Confidence            8999999999999999999        9999999999999999999999999999999999999998876422  25667


Q ss_pred             CCCCcc-----cceeeecccccCCccccCcchh
Q psy16142         90 LSPTME-----MGTIVSWAKKEGDKLNEGDLLA  117 (426)
Q Consensus        90 lg~s~d-----~g~i~~w~v~vGd~Ve~gd~L~  117 (426)
                      |++++|     |....+|++.+.+.++.+..|+
T Consensus       370 lsls~DHRviDGa~aa~Fl~~ik~~le~p~~ll  402 (404)
T COG0508         370 LSLSYDHRVIDGAEAARFLVALKELLEDPERLL  402 (404)
T ss_pred             ecccccccccccHHHHHHHHHHHHHhcChhhhh
Confidence            777776     7788999999999999887765

>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=99.24  E-value=9.8e-12  Score=97.43  Aligned_cols=61  Identities=28%  Similarity=0.337  Sum_probs=59.3

Q ss_pred             ceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEE
Q psy16142         97 GTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIV  158 (426)
Q Consensus        97 g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~  158 (426)
                      |.+.+|+++.||.|++||.|+++|+||+.+++.||.+|+|.++++++|+ .|..|++|++|+
T Consensus        10 G~i~~~~v~~G~~V~~g~~l~~ve~~k~~~~v~s~~~G~v~~~~~~~G~-~V~~g~~l~~ie   70 (70)
T PRK08225         10 GNVWKIVVKVGDTVEEGQDVVILESMKMEIPIVAEEAGTVKKINVQEGD-FVNEGDVLLEIE   70 (70)
T ss_pred             EEEEEEEeCCCCEECCCCEEEEEEcCCCcceEeCCCCEEEEEEEecCCC-EECCCCEEEEEC
Confidence            8999999999999999999999999999999999999999999999999 899999999984

>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS)

Probab=99.24  E-value=1.1e-11  Score=97.44  Aligned_cols=72  Identities=42%  Similarity=0.664  Sum_probs=67.7

Q ss_pred             EeccCCCCCcccceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEE
Q psy16142         85 VALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCII  157 (426)
Q Consensus        85 i~mP~lg~s~d~g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i  157 (426)
                      +.+|.++..+..+.+.+|++++|+.|+.||.|+.+|+||+.++|.||.+|+|.+++++.|+ .+..|+.|+.|
T Consensus         2 ~~~~~~~~~~~~g~~~~~~v~~G~~v~~g~~l~~ie~~k~~~~i~ap~~G~v~~~~~~~g~-~v~~g~~l~~i   73 (73)
T cd06663           2 ILIPDLAQHLGDGTVVKWLKKVGDKVKKGDVLAEIEAMKATSDVEAPKSGTVKKVLVKEGT-KVEGDTPLVKI   73 (73)
T ss_pred             cccCCCCCCccCEEEEEEEcCCcCEECCCCEEEEEEeCCeEEEEEcCCCEEEEEEEeCCCC-EECCCCEEEEC
Confidence            4578888888889999999999999999999999999999999999999999999999999 79999999874

These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.

>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated

Probab=99.19  E-value=2.3e-11  Score=132.64  Aligned_cols=74  Identities=27%  Similarity=0.450  Sum_probs=71.5

Q ss_pred             eEeccCCCCCcccceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEcC
Q psy16142         84 RVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVEN  160 (426)
Q Consensus        84 ~i~mP~lg~s~d~g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~  160 (426)
                      .+.||.|+  +++|.|.+|++++||.|++||+|++|||||++++|+||.+|+|.++++++|+ .|++|++|++|+.+
T Consensus         4 ~i~~P~lg--~~eg~i~~~~v~~Gd~V~~g~~l~~vEt~K~~~~v~a~~~G~v~~i~~~~g~-~V~~G~~l~~i~~~   77 (633)
T PRK11854          4 EIKVPDIG--ADEVEVTEILVKVGDKVEAEQSLITVEGDKASMEVPSPQAGVVKEIKVKVGD-KVETGALIMIFESA   77 (633)
T ss_pred             eEeeCCCC--CceEEEEEEEeCCCCEECCCCEEEEEEeCCeeEEEeCCCCEEEEEEEeCCCC-EEeCCCEEEEEecc
Confidence            57899999  8999999999999999999999999999999999999999999999999999 89999999999765

>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed

Probab=99.18  E-value=6.2e-12  Score=137.74  Aligned_cols=97  Identities=18%  Similarity=0.166  Sum_probs=83.8

Q ss_pred             ccccchhhhHHHHHHHHHh--------cCCcEEEecCcccccccceeeeCCccchhhhcccccccccccc--------Cc
Q psy16142         20 FLLYLLPWRWEPLLAGLRK--------KGGTVSISNLGMFGIKNFSAIINPPQACILAVGSLSQRLVREG--------ND   83 (426)
Q Consensus        20 ~~l~~i~~e~~~L~~kar~--------~gGtfTIsn~G~~G~~~~tpIInppq~aIlgvg~~~~~p~v~~--------~~   83 (426)
                      +++.+|.+++++|+.|||+        +||||||||+|++|+.+|+|||||||+||+|+|++...+.+..        -.
T Consensus       237 l~f~ef~~ay~dLV~KAR~gKLt~eD~~GgTFTISN~G~iGt~~ftPILnppQ~AILGVGAi~~p~~f~gas~~~l~~i~  316 (1228)
T PRK12270        237 MDFAQFWAAYEDIVRRARDGKLTADDFQGTTISLTNPGGIGTVHSVPRLMKGQGAIIGVGAMEYPAEFQGASEERLAELG  316 (1228)
T ss_pred             CCHHHHHHHHHHHHHHHHcCCCCHHHhCCceEEEecCCcccccceeeeecCCceEEEeccccccCceecCcccccccccc
Confidence            8999999999999999999        9999999999999999999999999999999999988777632        12


Q ss_pred             eEeccCCCCCcc-----cceeeecccccCCccccCcch
Q psy16142         84 RVALPALSPTME-----MGTIVSWAKKEGDKLNEGDLL  116 (426)
Q Consensus        84 ~i~mP~lg~s~d-----~g~i~~w~v~vGd~Ve~gd~L  116 (426)
                      .-+|..|..++|     |+...+|++.+.+.++-.|-.
T Consensus       317 i~kvMtLTlTyDHRVIdGA~sg~FL~~ik~lLeG~d~F  354 (1228)
T PRK12270        317 ISKVMTLTSTYDHRIIQGAESGEFLRTIHQLLLGEDGF  354 (1228)
T ss_pred             eeeeEEeeeeccceeeccHhHHHHHHHHHHHHhcccch
Confidence            236777777777     788899999999999844433

>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=99.15  E-value=4.2e-11  Score=105.04  Aligned_cols=60  Identities=27%  Similarity=0.290  Sum_probs=58.8

Q ss_pred             ceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEE
Q psy16142         97 GTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCII  157 (426)
Q Consensus        97 g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i  157 (426)
                      |++.+|++++||.|++||.|+++|+||+.++|.||++|+|.++++++|+ .|..|++|+.|
T Consensus        70 G~V~~i~V~~Gd~V~~Gq~L~~lEamKme~eI~Ap~~G~V~~i~v~~Gd-~V~~G~~L~~I  129 (130)
T PRK06549         70 GTILKVLVAVGDQVTENQPLLILEAMKMENEIVASSAGTVTAIHVTPGQ-VVNPGDGLITI  129 (130)
T ss_pred             EEEEEEEeCCCCEECCCCEEEEEeccCccEEEEcCCCeEEEEEEeCCCC-EeCCCCEEEEe
Confidence            8999999999999999999999999999999999999999999999999 89999999987

>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=99.08  E-value=1.3e-10  Score=104.89  Aligned_cols=60  Identities=28%  Similarity=0.443  Sum_probs=58.8

Q ss_pred             ceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEE
Q psy16142         97 GTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCII  157 (426)
Q Consensus        97 g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i  157 (426)
                      |++.+|++++||.|++||.|+++|+|||+++|.||.+|+|.++++++|+ .|..|++|+.|
T Consensus        93 G~I~~~~V~~Gd~V~~Gq~l~~iEamKme~eI~Ap~~G~V~~i~v~~Gd-~V~~Gq~L~~I  152 (153)
T PRK05641         93 GKILRILVREGQQVKVGQGLLILEAMKMENEIPAPKDGVVKKILVKEGD-TVDTGQPLIEL  152 (153)
T ss_pred             eEEEEEEeCCCCEEcCCCEEEEEeecccceEEecCCCeEEEEEEcCCCC-EECCCCEEEEe
Confidence            8999999999999999999999999999999999999999999999999 89999999987

>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein

Probab=99.07  E-value=1.2e-10  Score=105.62  Aligned_cols=75  Identities=23%  Similarity=0.276  Sum_probs=62.2

Q ss_pred             ceEeccCCCCCcc-cceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEE
Q psy16142         83 DRVALPALSPTME-MGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIV  158 (426)
Q Consensus        83 ~~i~mP~lg~s~d-~g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~  158 (426)
                      ..+.-|..|..+. ...-..|++++||.|++||.||.||+||+.++|+|+++|+|.+|+++.|+ .|..|++|++|+
T Consensus        81 ~~v~sp~~G~~~~~~~P~~~~~v~~Gd~V~~Gq~l~iiEamK~~~eI~A~~~G~v~~i~v~~g~-~V~~Gq~L~~i~  156 (156)
T TIGR00531        81 HFVRSPMVGTFYRAPSPDAKPFVEVGDKVKKGQIVCIVEAMKLMNEIEAEVAGKVVEILVENGQ-PVEYGQPLIVIE  156 (156)
T ss_pred             CEEeCCCCEEEEecCCCCCCccccCCCEeCCCCEEEEEEecccceEEecCCCcEEEEEEeCCCC-EECCCCEEEEEC
Confidence            3455554443322 12224699999999999999999999999999999999999999999999 899999999873

The gene name is accB or fabE.

>KOG0557|consensus

Probab=99.07  E-value=3.3e-11  Score=123.21  Aligned_cols=98  Identities=34%  Similarity=0.481  Sum_probs=83.7

Q ss_pred             ccccchhhhHHHHHHHHHh--------cCCcEEEecCcccccccceeeeCCccchhhhcccccccccc--c--------c
Q psy16142         20 FLLYLLPWRWEPLLAGLRK--------KGGTVSISNLGMFGIKNFSAIINPPQACILAVGSLSQRLVR--E--------G   81 (426)
Q Consensus        20 ~~l~~i~~e~~~L~~kar~--------~gGtfTIsn~G~~G~~~~tpIInppq~aIlgvg~~~~~p~v--~--------~   81 (426)
                      ..|.+|..++.+|+.+||.        +||||||||+|+||++.|+.||||||.|||++|...+..+.  .        .
T Consensus       354 kgl~~is~~vkel~~kAr~~kL~Pee~qgGtftiSNLGmf~V~~F~AiinPpq~~ILavg~~~~~~v~d~~~~~~~~~~~  433 (470)
T KOG0557|consen  354 KGLSTISSKVKELAQKAREGKLQPEEFQGGTFTLSNLGMFGVDMFTAIINPPQADILAVGAATPSVVPDANGPEKFSVIN  433 (470)
T ss_pred             ccHHHHHHHHHHHHHHHhhccCCcccccCCceeHhhccCcCccccccccCCchhhhhhcccCccccccCCCcccccceee
Confidence            7789999999999999999        99999999999999999999999999999999988766442  1        1


Q ss_pred             CceEeccCCCCCcccceeeecccccCCccccCcchh
Q psy16142         82 NDRVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLA  117 (426)
Q Consensus        82 ~~~i~mP~lg~s~d~g~i~~w~v~vGd~Ve~gd~L~  117 (426)
                      .+.+.+..-+..++|+...+|+....+.+|.+..|+
T Consensus       434 ~m~VTls~DhRvvdga~aa~Fl~~fk~~~EnP~~~l  469 (470)
T KOG0557|consen  434 AMTVTLSADHRVVDGAVAARFLDEFKENLENPEFLL  469 (470)
T ss_pred             eeEEEEecCcceecHHHHHHHHHHHHHHhhCHHhhh
Confidence            234555666677779999999999999999887664

>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=99.05  E-value=1.6e-10  Score=104.55  Aligned_cols=76  Identities=25%  Similarity=0.313  Sum_probs=65.0

Q ss_pred             CceEeccCCCCCcc-cceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEE
Q psy16142         82 NDRVALPALSPTME-MGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIV  158 (426)
Q Consensus        82 ~~~i~mP~lg~s~d-~g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~  158 (426)
                      ...|.-|..|..|. ...-..|++++||.|++||.||.||+||+.++|+||++|+|.+++++.|+ .|..|++|++|+
T Consensus        79 ~~~v~sp~~G~~~~~~sP~~~~~v~~Gd~V~~Gq~l~~iEamK~~~eI~a~~~G~i~~i~v~~g~-~V~~Gq~L~~i~  155 (155)
T PRK06302         79 GHVVTSPMVGTFYRAPSPDAPPFVEVGDTVKEGQTLCIIEAMKVMNEIEADKSGVVTEILVENGQ-PVEFGQPLFVIE  155 (155)
T ss_pred             CCEEeCCcCEEEEecCCCCCCcccCCCCEeCCCCEEEEEEecccceEEecCCCeEEEEEEcCCCC-EeCCCCEEEEeC
Confidence            34566676665443 23345799999999999999999999999999999999999999999999 899999999873

>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed

Probab=99.04  E-value=4.2e-11  Score=124.36  Aligned_cols=99  Identities=34%  Similarity=0.494  Sum_probs=84.4

Q ss_pred             cccccchhhhHHHHHHHHHh--------cCCcEEEecCcccccccceeeeCCccchhhhccccccccccccCceE--ecc
Q psy16142         19 HFLLYLLPWRWEPLLAGLRK--------KGGTVSISNLGMFGIKNFSAIINPPQACILAVGSLSQRLVREGNDRV--ALP   88 (426)
Q Consensus        19 ~~~l~~i~~e~~~L~~kar~--------~gGtfTIsn~G~~G~~~~tpIInppq~aIlgvg~~~~~p~v~~~~~i--~mP   88 (426)
                      ++++.+|.+++++++.++|+        +||||||||+|++|..+++|+||+||+||+++|++.+.|++.++...  .+.
T Consensus       296 ~~sl~ei~~~~~~~~~~ar~~~l~~~~~~~gtftiSn~G~~g~~~~~Pii~~p~~ail~iG~~~~~~~~~~g~~~~~~~m  375 (411)
T PRK11856        296 KKSLFELAREIKDLAEKAREGKLKPEELQGGTFTISNLGMFGGDYFTPIINPPEVAILGVGAIVERPVVVDGEIVVRKVM  375 (411)
T ss_pred             cCCHHHHHHHHHHHHHHHHcCCCCHHHhCCCeEEEeCCCccCCCceECccCCCceEEEEcccceEEEEEECCEEEEEEEE
Confidence            58999999999999999998        79999999999999999999999999999999999999887654322  233


Q ss_pred             CCCCCcc-----cceeeecccccCCccccCcchh
Q psy16142         89 ALSPTME-----MGTIVSWAKKEGDKLNEGDLLA  117 (426)
Q Consensus        89 ~lg~s~d-----~g~i~~w~v~vGd~Ve~gd~L~  117 (426)
                      .|+.++|     |..+.+|+....+.++.+..|+
T Consensus       376 ~lslt~DHRviDG~~aa~Fl~~l~~~le~p~~ll  409 (411)
T PRK11856        376 PLSLSFDHRVIDGADAARFLKALKELLENPALLL  409 (411)
T ss_pred             EEeEEeehhhcCcHHHHHHHHHHHHHHhCHHHHh
Confidence            3555544     8888999999999998887664

>PRK07051 hypothetical protein; Validated

Probab=99.03  E-value=3.6e-10  Score=91.09  Aligned_cols=57  Identities=26%  Similarity=0.348  Sum_probs=55.2

Q ss_pred             ecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEE
Q psy16142        101 SWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIV  158 (426)
Q Consensus       101 ~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~  158 (426)
                      .|++++||.|+.||.++++|+||+.++|.||.+|+|.++++++|+ .|..|++|++|+
T Consensus        23 ~~~v~~Gd~V~~g~~l~~ve~~k~~~~i~a~~~G~v~~i~~~~G~-~V~~G~~l~~i~   79 (80)
T PRK07051         23 PPYVEVGDAVAAGDVVGLIEVMKQFTEVEAEAAGRVVEFLVEDGE-PVEAGQVLARIE   79 (80)
T ss_pred             CCccCCCCEECCCCEEEEEEEcceEEEEeCCCCEEEEEEEcCCcC-EECCCCEEEEEe
Confidence            499999999999999999999999999999999999999999999 899999999985

>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase

Probab=99.02  E-value=2.6e-10  Score=109.77  Aligned_cols=57  Identities=26%  Similarity=0.369  Sum_probs=55.2

Q ss_pred             ecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEE
Q psy16142        101 SWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIV  158 (426)
Q Consensus       101 ~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~  158 (426)
                      .|++++||.|++||.|++||+||+.++|+|+++|+|.+|++++|+ .|.+|++|++|+
T Consensus       217 ~w~VkvGDsVkkGQvLavIEAMKmeieV~AP~sGtV~eIlVkeGD-~V~vGqpL~~IE  273 (274)
T PLN02983        217 PPFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIVEILAEDGK-PVSVDTPLFVIE  273 (274)
T ss_pred             cceeCCCCEecCCCEEEEEEeeceeeEEecCCCeEEEEEecCCCC-EeCCCCEEEEec
Confidence            399999999999999999999999999999999999999999999 899999999984

>PRK14042 pyruvate carboxylase subunit B; Provisional

Probab=98.96  E-value=6.1e-10  Score=119.86  Aligned_cols=62  Identities=26%  Similarity=0.453  Sum_probs=60.3

Q ss_pred             ceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEc
Q psy16142         97 GTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVE  159 (426)
Q Consensus        97 g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~  159 (426)
                      |.+.+|++++||.|++||.|++||+|||+++|.||.+|+|.++++++|+ .|.+|++|+.|+.
T Consensus       534 G~V~~~~V~~Gd~V~~Gq~L~~iEamKme~eV~AP~~GvV~~i~v~~Gd-~V~~G~~L~~I~~  595 (596)
T PRK14042        534 GSIIAIHVSAGDEVKAGQAVLVIEAMKMETEIKAPANGVVAEILCQKGD-KVTPGQVLIRVEV  595 (596)
T ss_pred             eEEEEEEeCCCCEeCCCCEEEEEEecceeeEEecCCCeEEEEEEeCCcC-EECCCCEEEEEeC
Confidence            8999999999999999999999999999999999999999999999999 8999999999964

>PRK11855 dihydrolipoamide acetyltransferase; Reviewed

Probab=98.95  E-value=8.6e-10  Score=118.54  Aligned_cols=76  Identities=32%  Similarity=0.566  Sum_probs=72.4

Q ss_pred             eEeccCCCCCcccceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEcCC
Q psy16142         84 RVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENE  161 (426)
Q Consensus        84 ~i~mP~lg~s~d~g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~  161 (426)
                      .++||.++. +.+|++..|++++||.|+.||.|++||+||+.++|.|+++|+|.++++++|+ .|.+|++|++|+..+
T Consensus         4 ~i~~p~~g~-~~~g~i~~~~v~~Gd~V~~g~~l~~iEt~K~~~~I~A~~~G~I~~i~v~~Gd-~V~~G~~L~~i~~~~   79 (547)
T PRK11855          4 EFKVPDIGE-VVEVEVIEWLVKEGDTVEEDQPLVTVETDKATMEIPSPAAGVVKEIKVKVGD-TVSVGGLLAVIEAAG   79 (547)
T ss_pred             eeecCCcCC-CceEEEEEEEcCCCCEeCCCCEEEEEEecCeeEEEecCCCeEEEEEEeCCCC-EecCCceeeEecccc
Confidence            578999999 9999999999999999999999999999999999999999999999999999 899999999997543

>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase

Probab=98.94  E-value=1e-09  Score=83.85  Aligned_cols=60  Identities=38%  Similarity=0.576  Sum_probs=57.6

Q ss_pred             ceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEE
Q psy16142         97 GTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCII  157 (426)
Q Consensus        97 g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i  157 (426)
                      |.+.+|+++.|+.|++||.|+.++++|+..+|.||++|+|.+++++.|+ .|..|++|+.|
T Consensus         8 G~v~~~~v~~G~~v~~g~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~-~V~~G~~l~~i   67 (67)
T cd06850           8 GTVVKVLVKEGDKVEAGQPLAVLEAMKMENEVTAPVAGVVKEILVKEGD-QVEAGQLLVVI   67 (67)
T ss_pred             EEEEEEEeCCCCEECCCCEEEEEEcccEEEEEeCCCCEEEEEEEECCCC-EECCCCEEEEC
Confidence            7888999999999999999999999999999999999999999999999 89999999875

This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.

>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]

Probab=98.91  E-value=8.1e-10  Score=115.39  Aligned_cols=69  Identities=35%  Similarity=0.581  Sum_probs=64.7

Q ss_pred             cCceEeccCCCCCcccceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEE
Q psy16142         81 GNDRVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIV  158 (426)
Q Consensus        81 ~~~~i~mP~lg~s~d~g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~  158 (426)
                      +....+||        |+|..+.++.|+.|.+||+|+++|+|||++.|.||.+|+|+++.+.+|+ .|..|++|++|+
T Consensus       576 ~~l~aPMp--------G~v~~v~V~~G~~V~~G~~lvvlEAMKME~~l~A~~dG~V~~v~v~~Gd-~V~~g~vLve~~  644 (645)
T COG4770         576 GELLAPMP--------GTVVSVAVKEGQEVSAGDLLVVLEAMKMENTLRAPRDGVVAKLAVAEGD-QVAVGTVLVEFE  644 (645)
T ss_pred             CceecCCC--------ceEEEEEecCCCEecCCCeEEEeEehhcccceecCcCcEEEEEEecCCC-ccccCceEEEec
Confidence            33455888        9999999999999999999999999999999999999999999999999 899999999985

>TIGR02712 urea_carbox urea carboxylase

Probab=98.78  E-value=4.6e-09  Score=121.61  Aligned_cols=61  Identities=28%  Similarity=0.440  Sum_probs=59.4

Q ss_pred             ceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEE
Q psy16142         97 GTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIV  158 (426)
Q Consensus        97 g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~  158 (426)
                      |.+.+|++++||.|++||.|++||+|||+++|.||.+|+|+++++++|+ .|.+|++|+.|+
T Consensus      1141 G~v~~~~v~~Gd~V~~Gd~l~~iEsmK~~~~v~ap~~G~v~~i~~~~G~-~V~~G~~l~~i~ 1201 (1201)
T TIGR02712      1141 GNFWKVLVEVGDRVEAGQPLVILEAMKMEMPVSAPVAGKVTKILCQPGD-MVDAGDIVAVLE 1201 (1201)
T ss_pred             EEEEEEEeCCCCEECCCCEEEEEEecCeeEEEEcCCCEEEEEEEeCCCC-EeCCCCEEEEeC
Confidence            8999999999999999999999999999999999999999999999999 899999999884

Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.

>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit

Probab=98.75  E-value=4.8e-09  Score=113.14  Aligned_cols=57  Identities=30%  Similarity=0.527  Sum_probs=55.6

Q ss_pred             ceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEE
Q psy16142         97 GTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLV  154 (426)
Q Consensus        97 g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l  154 (426)
                      |.|.+|++++||.|++||+|++||+|||+++|.||.+|+|.++++++|+ .|.+|++|
T Consensus       526 G~v~~~~V~~Gd~V~~G~~l~~iEamKme~~i~ap~~G~V~~i~v~~Gd-~V~~G~~l  582 (582)
T TIGR01108       526 GSIVKVKVSEGQTVAEGEVLLILEAMKMETEIKAAAAGTVREILVKVGD-AVSVGQVL  582 (582)
T ss_pred             EEEEEEEeCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCCC-EeCCCCCC
Confidence            9999999999999999999999999999999999999999999999999 89999975

This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.

>PRK14040 oxaloacetate decarboxylase; Provisional

Probab=98.71  E-value=1.3e-08  Score=110.07  Aligned_cols=60  Identities=27%  Similarity=0.429  Sum_probs=58.9

Q ss_pred             ceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEE
Q psy16142         97 GTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCII  157 (426)
Q Consensus        97 g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i  157 (426)
                      |.+.+|++++||.|++||.|+++|+|||+++|.||.+|+|.++++++|+ .|..|++|++|
T Consensus       533 G~I~~~~V~~Gd~V~~Gd~l~~iEamKme~~I~Ap~~G~V~~i~v~~Gd-~V~~G~~L~~I  592 (593)
T PRK14040        533 GNIFKVIVTEGQTVAEGDVLLILEAMKMETEIRAAQAGTVRGIAVKEGD-AVAVGDTLLTL  592 (593)
T ss_pred             EEEEEEEeCCCCEeCCCCEEEEEecCceeEEEEcCCCEEEEEEEeCCCC-EECCCCEEEEe
Confidence            8999999999999999999999999999999999999999999999999 89999999987

>TIGR01235 pyruv_carbox pyruvate carboxylase

Probab=98.68  E-value=1.5e-08  Score=116.44  Aligned_cols=61  Identities=26%  Similarity=0.511  Sum_probs=59.3

Q ss_pred             ceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEE
Q psy16142         97 GTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIV  158 (426)
Q Consensus        97 g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~  158 (426)
                      |.+.+|++++||.|++||.|++||+|||+++|.||.+|+|.++++++|+ .|.+|++|++|+
T Consensus      1083 G~v~~~~v~~Gd~V~~Gd~L~~iEamKm~~~I~Ap~~G~V~~i~v~~G~-~V~~g~~l~~i~ 1143 (1143)
T TIGR01235      1083 GVIIEVKVSSGQAVNKGDPLVVLEAMKMETAIQAPKDGTIKEVLVKAGE-QIDAKDLLLVLE 1143 (1143)
T ss_pred             cEEEEEEeCCCCEeCCCCEEEEEEecceeEEEecCCCEEEEEEEeCCCC-EECCCCEEEEeC
Confidence            8999999999999999999999999999999999999999999999999 899999999884

This enzyme plays a role in gluconeogensis but not glycolysis.

>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases

Probab=98.67  E-value=4.9e-08  Score=74.22  Aligned_cols=72  Identities=53%  Similarity=0.918  Sum_probs=67.8

Q ss_pred             EeccCCCCCcccceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEE
Q psy16142         85 VALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCII  157 (426)
Q Consensus        85 i~mP~lg~s~d~g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i  157 (426)
                      +.+|.++.+...+.+..|++..|+.+..++.++.++++|+.+.+.++.+|++.+..+.+|+ .+..|++|++|
T Consensus         3 ~~~~~~~~~~~~g~i~~~~~~~g~~v~~~~~l~~~~~~~~~~~i~a~~~g~v~~~~~~~g~-~v~~g~~l~~~   74 (74)
T cd06849           3 IKMPDLGESMTEGTIVEWLVKEGDSVEEGDVLAEVETDKATVEVEAPAAGVLAKILVEEGD-TVPVGQVIAVI   74 (74)
T ss_pred             EECCCCCCCCcEEEEEEEEECCCCEEcCCCEEEEEEeCCeEEEEECCCCEEEEEEeeCCcC-EeCCCCEEEEC
Confidence            5678888888889999999999999999999999999999999999999999999999999 89999999874

2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.

>PRK09282 pyruvate carboxylase subunit B; Validated

Probab=98.59  E-value=8.3e-08  Score=103.91  Aligned_cols=61  Identities=34%  Similarity=0.507  Sum_probs=59.5

Q ss_pred             ceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEE
Q psy16142         97 GTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIV  158 (426)
Q Consensus        97 g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~  158 (426)
                      |.+.+|++++||.|++||+|+++|+||++++|.||.+|+|.++++++|+ .|..|++|+.|+
T Consensus       531 G~v~~~~V~~Gd~V~~Gq~L~~ieamKme~~V~Ap~~G~V~~i~v~~G~-~V~~G~~L~~i~  591 (592)
T PRK09282        531 GTVVKVKVKEGDKVKAGDTVLVLEAMKMENEIQAPVDGTVKEILVKEGD-RVNPGDVLMEIE  591 (592)
T ss_pred             EEEEEEEeCCCCEECCCCEEEEEeccccceEEEcCCCeEEEEEEeCCCC-EeCCCCEEEEec
Confidence            7999999999999999999999999999999999999999999999999 899999999985

>PRK12999 pyruvate carboxylase; Reviewed

Probab=98.55  E-value=1.1e-07  Score=109.75  Aligned_cols=61  Identities=36%  Similarity=0.569  Sum_probs=59.6

Q ss_pred             ceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEE
Q psy16142         97 GTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIV  158 (426)
Q Consensus        97 g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~  158 (426)
                      |.+.+|++++||.|++||.|+++|+|||+++|.||.+|+|.++++++|+ .|..|++|+.|+
T Consensus      1085 G~v~~i~v~~Gd~V~~G~~L~~leamKme~~i~Ap~~G~V~~i~v~~g~-~V~~g~~l~~i~ 1145 (1146)
T PRK12999       1085 GSVVTVLVKEGDEVKAGDPLAVIEAMKMETTITAPVDGTVKRVLVKAGD-QVEAGDLLVELE 1145 (1146)
T ss_pred             EEEEEEEcCCCCEECCCCEEEEEEccccceEEecCCCEEEEEEEeCCCC-EECCCCEEEEEc
Confidence            8999999999999999999999999999999999999999999999999 899999999985

>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]

Probab=98.39  E-value=3.2e-07  Score=99.24  Aligned_cols=61  Identities=33%  Similarity=0.564  Sum_probs=59.2

Q ss_pred             ceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEE
Q psy16142         97 GTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIV  158 (426)
Q Consensus        97 g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~  158 (426)
                      |.+++..++.||.|++||.|+.+|+|||+..|.||.+|+|.+++|+.|+ .|..|+.|..++
T Consensus      1088 G~Vv~v~V~~G~~Vk~Gd~l~~ieAMKMEt~i~Ap~dG~i~~v~V~~gd-~i~~gDLLi~~~ 1148 (1149)
T COG1038        1088 GVVVEVKVKKGDKVKKGDVLAVIEAMKMETTISAPFDGTVKEVLVKDGD-QIDGGDLLVVVE 1148 (1149)
T ss_pred             CceEEEEEccCCeecCCCeeeehhhhhhceeeecCCCceEeEEEecCCC-ccccCceEEEcc
Confidence            8999999999999999999999999999999999999999999999999 899999999874

>KOG0369|consensus

Probab=98.06  E-value=3.9e-06  Score=89.44  Aligned_cols=69  Identities=30%  Similarity=0.490  Sum_probs=63.7

Q ss_pred             cCceEeccCCCCCcccceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEE
Q psy16142         81 GNDRVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIV  158 (426)
Q Consensus        81 ~~~~i~mP~lg~s~d~g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~  158 (426)
                      .++-.+||        |++.+..+++|+.|++||+|+++.+|||++.|.||.+|+|+++.+..|+ .+..|+.+++++
T Consensus      1107 g~igAPMp--------G~vieikvk~G~kV~Kgqpl~VLSAMKMEmVv~sP~~G~vk~v~v~~g~-~~~g~DL~~~~E 1175 (1176)
T KOG0369|consen 1107 GHIGAPMP--------GTVIEIKVKEGAKVKKGQPLAVLSAMKMEMVISSPHAGTVKKVHVVQGT-KVEGGDLIVELE 1175 (1176)
T ss_pred             ccccCCCC--------CceEEEEEecCceecCCCceEeeecceeeeeecCCCCceeeEEEecCCC-cccccceEEEcc
Confidence            34445777        8999999999999999999999999999999999999999999999999 799999999885

>KOG0238|consensus

Probab=97.99  E-value=5.2e-06  Score=86.29  Aligned_cols=61  Identities=26%  Similarity=0.371  Sum_probs=58.9

Q ss_pred             ceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEE
Q psy16142         97 GTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIV  158 (426)
Q Consensus        97 g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~  158 (426)
                      |.|.+++++.||.|.+||.++++++|||+..+.||.+|+|+.+.++.|+ +|.-|.+|.+++
T Consensus       610 G~Iekv~Vkpgd~V~~Gq~l~Vl~AMKMe~~~~apk~gtvk~v~~~aG~-~v~~g~vlv~~~  670 (670)
T KOG0238|consen  610 GIIEKVLVKPGDKVKEGQELVVLIAMKMEHSLKAPKDGTVKDVKYKAGA-TVGDGAVLVEFE  670 (670)
T ss_pred             CeeeeeeccchhhhcccCceEEEEecchhhhhhCCCCCceeeEeeecCc-ccCCCceEEEeC
Confidence            8999999999999999999999999999999999999999999999999 899999998873

>cd06848 GCS_H Glycine cleavage H-protein

Probab=97.76  E-value=1.5e-05  Score=66.32  Aligned_cols=46  Identities=17%  Similarity=0.240  Sum_probs=42.3

Q ss_pred             eecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCC
Q psy16142        100 VSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGS  145 (426)
Q Consensus       100 ~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~  145 (426)
                      .-|+.++|+.|+.|+.+++||++|+..+|.||.+|+|.++..+.++
T Consensus        33 ~i~~~~~G~~v~~g~~l~~iEs~k~~~~i~sP~~G~v~~~n~~l~~   78 (96)
T cd06848          33 FVELPEVGTEVKKGDPFGSVESVKAASDLYSPVSGEVVEVNEALLD   78 (96)
T ss_pred             EEEecCCCCEEeCCCEEEEEEEccEEEEEeCCCCEEEEEEhhhhhc
Confidence            3478888999999999999999999999999999999999877776

Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-proteins) which catalyzes the oxidative cleavage of glycine. The H-protein shuttles the methylamine group of glycine from the P-protein (glycine dehydrogenase) to the T-protein (aminomethyltransferase) via a lipoyl group, attached to a completely conserved lysine residue.

>KOG0368|consensus

Probab=97.54  E-value=8.7e-05  Score=84.88  Aligned_cols=66  Identities=20%  Similarity=0.438  Sum_probs=61.5

Q ss_pred             ccceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEcCCc
Q psy16142         95 EMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENES  162 (426)
Q Consensus        95 d~g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~~  162 (426)
                      ..|.+.+|+++.|+.|+.||+.++||.|||.|.+.|+.+|+| +...++|+ .+.+|++|+.+..++.
T Consensus       692 s~GKLl~ylVedG~hv~~Gq~YAeiEvMKMvm~lva~~~G~i-~~i~~~G~-~i~aG~vlakL~lDdp  757 (2196)
T KOG0368|consen  692 SPGKLLQYLVEDGEHVEAGQPYAEIEVMKMVMPLVAKEPGRI-QLIKQEGD-AIEAGSVLAKLTLDDP  757 (2196)
T ss_pred             CCccceEEEecCCCceecCCeeeehehhheeeeeeccCCceE-EEecCCCC-ccCccceeEEeecCCh
Confidence            368999999999999999999999999999999999999999 78899999 8999999999986543

>TIGR03077 not_gcvH glycine cleavage protein H-like protein, Chlamydial

Probab=97.46  E-value=6e-05  Score=64.49  Aligned_cols=42  Identities=19%  Similarity=0.382  Sum_probs=37.5

Q ss_pred             cccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCC
Q psy16142        104 KKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGS  145 (426)
Q Consensus       104 v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~  145 (426)
                      .++|+.|++||.+++||++|+..+|.||.+|+|.+++-+..+
T Consensus        38 p~~G~~V~~g~~i~~IEs~K~~~ei~sP~sG~Vv~vN~~l~~   79 (110)
T TIGR03077        38 PSVGSSCKEGEVLVILESSKSAIEVLSPVSGEVIEVNIALED   79 (110)
T ss_pred             CCCCCEEcCCCEEEEEEeccEEEEEeCCCCEEEEEEHHHhhh
Confidence            377999999999999999999999999999999999654443

The H protein (GcvH) of the glycine cleavage system shuttles the methylamine group of glycine from the P protein to the T protein. Most Chlamydia but lack the P and T proteins, and have a single homolog of GcvH that appears deeply split from canonical GcvH in molecular phylogenetic trees. The protein family modeled here is observed the Chlamydial GcvH homolog, so far always seen as part of a two-gene operon, downstream of a member of the uncharacterized protein family TIGR03076. The function of this protein is unknown.

>PRK00624 glycine cleavage system protein H; Provisional

Probab=97.26  E-value=0.00016  Score=62.21  Aligned_cols=36  Identities=22%  Similarity=0.402  Sum_probs=34.5

Q ss_pred             ccCCccccCcchhhhhcccccceeecCCCeEEEEEe
Q psy16142        105 KEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKIL  140 (426)
Q Consensus       105 ~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~  140 (426)
                      ++|+.|++||.+++||++|+..+|.||.+|+|.++.
T Consensus        41 ~~G~~V~~g~~i~~IEs~K~~~~i~sPvsG~Vv~vN   76 (114)
T PRK00624         41 SVGSFCKEGEVLVILESSKSAIEVLSPVSGEVIEVN   76 (114)
T ss_pred             CCCCEEeCCCEEEEEEeccEEEEEeCCCCEEEEEEH
Confidence            779999999999999999999999999999999884

>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like

Probab=97.25  E-value=0.00038  Score=51.00  Aligned_cols=35  Identities=17%  Similarity=0.429  Sum_probs=32.0

Q ss_pred             ceeecCCCeEEEEEeecCCCccccCCcEEEEEEcCC
Q psy16142        126 MGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENE  161 (426)
Q Consensus       126 ~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~  161 (426)
                      ..|.+|.+|+|.++++++|+ .|+.|++|++|+..+
T Consensus         3 ~~I~~~~~G~V~~v~V~~G~-~VkkGd~L~~ld~~~   37 (50)
T PF13533_consen    3 VTIQAPVSGRVESVYVKEGQ-QVKKGDVLLVLDSPD   37 (50)
T ss_pred             EEEeCCCCEEEEEEEecCCC-EEcCCCEEEEECcHH
Confidence            57899999999999999999 899999999997643

>PRK01202 glycine cleavage system protein H; Provisional

Probab=97.12  E-value=0.00046  Score=60.56  Aligned_cols=59  Identities=22%  Similarity=0.329  Sum_probs=46.9

Q ss_pred             eecccccCCccccCcchhhhhcccccceeecCCCeEEEEE---eecCCCcccc---CCc-EEEEEEcC
Q psy16142        100 VSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKI---LVPAGSKDVP---IGK-LVCIIVEN  160 (426)
Q Consensus       100 ~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i---~v~~G~~~v~---vG~-~l~~i~~~  160 (426)
                      +.| .++|+.|++||.++.||++|+..+|.||.+|+|.++   +....+ .+.   .|+ -|+.+...
T Consensus        42 v~l-p~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~~l~~~p~-~ln~~p~~~gWl~~v~~~  107 (127)
T PRK01202         42 VEL-PEVGDEVKAGETFGVVESVKAASDIYAPVSGEVVEVNEALEDSPE-LVNEDPYGEGWLFKIKPS  107 (127)
T ss_pred             EEc-CCCCCEecCCCEEEEEEEcceeeeeecCCCeEEEEEhHHhhhCcH-hhcCCCCCCceEEEEEeC
Confidence            343 378999999999999999999999999999999999   444444 344   444 78888654

>PRK13380 glycine cleavage system protein H; Provisional

Probab=96.99  E-value=0.00038  Score=62.37  Aligned_cols=49  Identities=20%  Similarity=0.264  Sum_probs=41.4

Q ss_pred             ceeeeccc-ccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCC
Q psy16142         97 GTIVSWAK-KEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGS  145 (426)
Q Consensus        97 g~i~~w~v-~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~  145 (426)
                      |.|..+.. ++|+.|++||.++.||++|+..+|.||.+|+|.++....-+
T Consensus        44 G~I~~v~lp~~G~~V~~Gd~~~~IEs~K~~~~v~sPvsG~Vv~vN~~l~~   93 (144)
T PRK13380         44 GDVVFVRLKELGKKVEKGKPVATLESGKWAGPVPAPLTGEVVEVNEALED   93 (144)
T ss_pred             CCEEEEEcCCCCCEeeCCCeEEEEEEcceEeeeecCcCEEEEEEHHhhhh
Confidence            45555544 58999999999999999999999999999999998766443

>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A)

Probab=96.85  E-value=0.0014  Score=65.82  Aligned_cols=36  Identities=28%  Similarity=0.456  Sum_probs=32.4

Q ss_pred             ceeecCCCeEEEEEeecCCCccccCCcEEEEEEcCCc
Q psy16142        126 MGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENES  162 (426)
Q Consensus       126 ~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~~  162 (426)
                      ..|.||.+|+|..+.+.+|+ .|..|++|+.|.+.+.
T Consensus       205 ~~I~AP~~G~V~~~~~~~G~-~v~~g~~l~~i~~~~~  240 (334)
T TIGR00998       205 TVIRAPFDGYVARRFVQVGQ-VVSPGQPLMAVVPAEQ  240 (334)
T ss_pred             cEEEcCCCcEEEEEecCCCC-EeCCCCeeEEEEcCCc
Confidence            46999999999999999999 8999999999986543

>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional

Probab=96.80  E-value=0.0019  Score=67.30  Aligned_cols=66  Identities=20%  Similarity=0.325  Sum_probs=56.4

Q ss_pred             cceeeecc-cccCCccccCcchhhhhcc------------------------------------------------cccc
Q psy16142         96 MGTIVSWA-KKEGDKLNEGDLLAEIETD------------------------------------------------KATM  126 (426)
Q Consensus        96 ~g~i~~w~-v~vGd~Ve~gd~L~~vetd------------------------------------------------K~~~  126 (426)
                      .|.|.+.+ +++||.|++||+|++|++.                                                ....
T Consensus       131 ~G~V~~l~~~~~Gd~VkkGq~La~l~spel~~aq~e~~~~~~~~~~~~~~~~~~~rl~~~~i~~~~i~~l~~~~~~~~~~  210 (409)
T PRK09783        131 AGFIDKVYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEADIRRLIATRKIQTRF  210 (409)
T ss_pred             CEEEEEEEecCCCCEECCCCEEEEEeCHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCHHHHHHHHHcCCCCCcE
Confidence            57888988 9999999999999999731                                                0134


Q ss_pred             eeecCCCeEEEEEeecCCCccccCCcEEEEEEcCCc
Q psy16142        127 GFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENES  162 (426)
Q Consensus       127 ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~~  162 (426)
                      .|.||++|+|.+..+.+|+ .|..|++|+.|...+.
T Consensus       211 ~I~AP~dGvV~~~~v~~G~-~V~~g~~L~~I~d~~~  245 (409)
T PRK09783        211 TLKAPIDGVITAFDLRAGM-NIAKDNVVAKIQGMDP  245 (409)
T ss_pred             EEECCCCeEEEEEECCCCC-EECCCCeEEEEEcCCe
Confidence            7999999999999999999 8999999999976543

>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit

Probab=96.75  E-value=0.0015  Score=64.73  Aligned_cols=65  Identities=28%  Similarity=0.511  Sum_probs=56.0

Q ss_pred             cceeeecccccCCccccCcchhhhhcccc---------------------------------------------------
Q psy16142         96 MGTIVSWAKKEGDKLNEGDLLAEIETDKA---------------------------------------------------  124 (426)
Q Consensus        96 ~g~i~~w~v~vGd~Ve~gd~L~~vetdK~---------------------------------------------------  124 (426)
                      +|.+.+++++.||.|++||+|+.+++.-.                                                   
T Consensus        34 ~G~V~~i~v~~G~~V~kG~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~~~~s~~~~~~~~~~~~~  113 (322)
T TIGR01730        34 AGKITKISVREGQKVKKGQVLARLDDDDYQLALQAALAQLAAAEAQLELAQRSFERAERLVKRNAVSQADLDDAKAAVEA  113 (322)
T ss_pred             cEEEEEEEcCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHH
Confidence            48899999999999999999998864211                                                   


Q ss_pred             --------------------cceeecCCCeEEEEEeecCCCccccCCcEEEEEEcCC
Q psy16142        125 --------------------TMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENE  161 (426)
Q Consensus       125 --------------------~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~  161 (426)
                                          ...|.||.+|+|..+.+.+|+ .|..|++|+.|...+
T Consensus       114 ~~~~l~~~~~~l~~~~~~~~~~~i~AP~~G~V~~~~~~~G~-~v~~g~~l~~i~~~~  169 (322)
T TIGR01730       114 AQADLEAAKASLASAQLNLRYTEIRAPFDGTIGRRLVEVGA-YVTAGQTLATIVDLD  169 (322)
T ss_pred             HHHHHHHHHHHHHHHHHhhccCEEECCCCcEEEEEEcCCCc-eeCCCCcEEEEEcCC
Confidence                                236999999999999999999 899999999997543

This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.

>TIGR00527 gcvH glycine cleavage system H protein

Probab=96.72  E-value=0.00079  Score=59.08  Aligned_cols=41  Identities=17%  Similarity=0.275  Sum_probs=36.6

Q ss_pred             cccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCC
Q psy16142        104 KKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAG  144 (426)
Q Consensus       104 v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G  144 (426)
                      .++|+.|++|+.++.||++|+..+|.||.+|+|.++.-..-
T Consensus        44 p~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~~l~   84 (127)
T TIGR00527        44 PEVGAEVSAGESCGSVESVKAASDIYAPVSGTVVEVNDALE   84 (127)
T ss_pred             CCCCCEecCCCEEEEEEEeeeeeeeecCCcEEEEEehHhhh
Confidence            36899999999999999999999999999999988864433

The genome of Aquifex aeolicus contains one protein scoring above the trusted cutoff and clustering with other bacterial H proteins, and four more proteins clustering together and scoring below the trusted cutoff; it seems doubtful that all of these homologs are authentic H protein. The Chlamydial homolog of H protein is nearly as divergent as the Aquifex outgroup, is not accompanied by P and T proteins, is not included in the seed alignment, and consequently also scores below the trusted cutoff.

>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional

Probab=96.58  E-value=0.0027  Score=63.74  Aligned_cols=65  Identities=17%  Similarity=0.355  Sum_probs=55.7

Q ss_pred             cceeeecccccCCccccCcchhhhhccc----------------------------------------------------
Q psy16142         96 MGTIVSWAKKEGDKLNEGDLLAEIETDK----------------------------------------------------  123 (426)
Q Consensus        96 ~g~i~~w~v~vGd~Ve~gd~L~~vetdK----------------------------------------------------  123 (426)
                      .|.|.++++++||.|++||+|+.++...                                                    
T Consensus        55 ~G~V~~v~V~~Gd~VkkGqvLa~Ld~~~~~~~l~~a~a~l~~~~a~~~~~~~~~~r~~~L~~~aiS~~~~d~a~~~~~~a  134 (310)
T PRK10559         55 SGLITQVNVHDNQLVKKGQVLFTIDQPRYQKALAEAEADVAYYQVLAQEKRREAGRRNRLGVQAMSREEIDQANNVLQTV  134 (310)
T ss_pred             ceEEEEEEeCCcCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Confidence            4899999999999999999999886521                                                    


Q ss_pred             ------------------ccceeecCCCeEEEEEeecCCCccccCCcEEEEEEcCC
Q psy16142        124 ------------------ATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENE  161 (426)
Q Consensus       124 ------------------~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~  161 (426)
                                        -...|.||++|+|.++.+++|+ .|..|++|+.|...+
T Consensus       135 ~a~l~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~~~~G~-~V~~g~~l~~Iv~~~  189 (310)
T PRK10559        135 LHQLAKAQATRDLAKLDLERTVIRAPADGWVTNLNVYTGE-FITRGSTAVALVKQN  189 (310)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCEEECCCCeEEEeEecCCCC-EecCCCeeEEEEeCC
Confidence                              0246899999999999999999 899999999987543

>PRK10476 multidrug resistance protein MdtN; Provisional

Probab=96.53  E-value=0.0031  Score=63.97  Aligned_cols=35  Identities=11%  Similarity=0.243  Sum_probs=31.8

Q ss_pred             ceeecCCCeEEEEEeecCCCccccCCcEEEEEEcCC
Q psy16142        126 MGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENE  161 (426)
Q Consensus       126 ~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~  161 (426)
                      ..|.||++|+|.++.+.+|+ .|..|++|+.|...+
T Consensus       209 ~~I~AP~dG~V~~~~~~~G~-~V~~g~~l~~I~~~~  243 (346)
T PRK10476        209 TTVRAPFDGRVVGLKVSVGE-FAAPMQPIFTLIDTD  243 (346)
T ss_pred             CEEECCCCcEEEeeecCCCC-CcCCCCeEEEEecCC
Confidence            36899999999999999999 899999999997654

>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional

Probab=96.47  E-value=0.0055  Score=47.94  Aligned_cols=35  Identities=9%  Similarity=0.191  Sum_probs=31.9

Q ss_pred             ceeecCCCeEEEEEeecCCCccccCCcEEEEEEcCC
Q psy16142        126 MGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENE  161 (426)
Q Consensus       126 ~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~  161 (426)
                      -.|.||.+|+|.++++++|+ .|+.|++|+.++...
T Consensus         3 ~~v~a~~~G~i~~~~v~~Gd-~V~~g~~l~~ve~~K   37 (71)
T PRK05889          3 EDVRAEIVASVLEVVVNEGD-QIGKGDTLVLLESMK   37 (71)
T ss_pred             cEEeCCCCEEEEEEEeCCCC-EECCCCEEEEEEecc
Confidence            35899999999999999999 899999999997754

>PRK03598 putative efflux pump membrane fusion protein; Provisional

Probab=96.24  E-value=0.0051  Score=62.02  Aligned_cols=35  Identities=17%  Similarity=0.264  Sum_probs=31.7

Q ss_pred             ceeecCCCeEEEEEeecCCCccccCCcEEEEEEcCC
Q psy16142        126 MGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENE  161 (426)
Q Consensus       126 ~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~  161 (426)
                      ..|.||++|+|..+.+.+|+ .|..|++|+.|...+
T Consensus       204 ~~I~AP~dG~V~~~~~~~G~-~V~~G~~l~~I~~~~  238 (331)
T PRK03598        204 TELIAPSDGTILTRAVEPGT-MLNAGSTVFTLSLTR  238 (331)
T ss_pred             CEEECCCCeEEEeccCCCCC-CcCCCCeEEEEecCC
Confidence            47999999999999999999 899999999997543

>PRK15136 multidrug efflux system protein EmrA; Provisional

Probab=96.11  E-value=0.0072  Score=62.62  Aligned_cols=36  Identities=17%  Similarity=0.335  Sum_probs=32.3

Q ss_pred             ceeecCCCeEEEEEeecCCCccccCCcEEEEEEcCCc
Q psy16142        126 MGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENES  162 (426)
Q Consensus       126 ~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~~  162 (426)
                      ..|.||.+|+|..+.+++|+ .|..|++|+.|.+.+.
T Consensus       216 t~I~AP~dG~V~~~~v~~G~-~V~~g~pl~~Iv~~~~  251 (390)
T PRK15136        216 TKIVSPMTGYVSRRSVQVGA-QISPTTPLMAVVPATN  251 (390)
T ss_pred             CEEECCCCeEEEEEecCCCC-EeCCCCeEEEEEeCCc
Confidence            36999999999999999999 8999999999976543

>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed

Probab=96.04  E-value=0.0075  Score=62.16  Aligned_cols=65  Identities=18%  Similarity=0.313  Sum_probs=54.4

Q ss_pred             cceeeecccccCCccccCcchhhhhcccc---------------------------------------------------
Q psy16142         96 MGTIVSWAKKEGDKLNEGDLLAEIETDKA---------------------------------------------------  124 (426)
Q Consensus        96 ~g~i~~w~v~vGd~Ve~gd~L~~vetdK~---------------------------------------------------  124 (426)
                      .|.|.++++++||.|++||+|+.+++.-.                                                   
T Consensus        71 ~G~V~~v~v~~Gd~VkkGq~La~ld~~~~~~~~~~a~a~l~~a~a~l~~a~~~~~R~~~L~~~~~iS~~~~~~~~~~~~~  150 (385)
T PRK09578         71 AGIVTARTYEEGQEVKQGAVLFRIDPAPLKAARDAAAGALAKAEAAHLAALDKRRRYDDLVRDRAVSERDYTEAVADERQ  150 (385)
T ss_pred             cEEEEEEECCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            48999999999999999999998865311                                                   


Q ss_pred             --------------------cceeecCCCeEEEEEeecCCCccccCC--cEEEEEEcCC
Q psy16142        125 --------------------TMGFETPEEGYLAKILVPAGSKDVPIG--KLVCIIVENE  161 (426)
Q Consensus       125 --------------------~~ei~a~~~G~v~~i~v~~G~~~v~vG--~~l~~i~~~~  161 (426)
                                          ...|.||++|+|.+.++.+|+ .|..|  ++|+.|...+
T Consensus       151 a~a~~~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~v~~G~-~V~~g~~~~l~~i~~~~  208 (385)
T PRK09578        151 AKAAVASAKAELARAQLQLDYATVTAPIDGRARRALVTEGA-LVGQDQATPLTTVEQLD  208 (385)
T ss_pred             HHHHHHHHHHHHHHHHHhhcCCEEECCCCeEEEeeecCCCC-eecCCCCcceEEEEecC
Confidence                                137999999999999999999 89885  5898886543

>PRK06748 hypothetical protein; Validated

Probab=95.90  E-value=0.013  Score=47.68  Aligned_cols=33  Identities=21%  Similarity=0.210  Sum_probs=31.0

Q ss_pred             eecCCCeEEEEEeecCCCccccCCcEEEEEEc-CC
Q psy16142        128 FETPEEGYLAKILVPAGSKDVPIGKLVCIIVE-NE  161 (426)
Q Consensus       128 i~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~-~~  161 (426)
                      |.||..|+|.++++++|| .|..|++|+.++. +.
T Consensus         7 v~sp~~G~I~~w~vk~GD-~V~~gd~l~~IETMdK   40 (83)
T PRK06748          7 VYSPCYGKVEKLFVRESS-YVYEWEKLALIETIDK   40 (83)
T ss_pred             EecCCcEEEEEEEeCCCC-EECCCCEEEEEEcCCC
Confidence            889999999999999999 8999999999988 53

>PF01597 GCV_H: Glycine cleavage H-protein; InterPro: IPR002930 This is a family of glycine cleavage H-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes

Probab=95.53  E-value=0.0082  Score=52.26  Aligned_cols=39  Identities=33%  Similarity=0.481  Sum_probs=32.4

Q ss_pred             cccCCccccCcchhhhhcccccceeecCCCeEEEEEeec
Q psy16142        104 KKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVP  142 (426)
Q Consensus       104 v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~  142 (426)
                      .++|+.+++|+.++.||+.|...++.||.+|+|.++.-.
T Consensus        39 p~~g~~~~~g~~~~~ies~k~~~~l~sPvsG~Vv~vN~~   77 (122)
T PF01597_consen   39 PKVGTKLKKGDPFASIESSKAVSDLYSPVSGTVVEVNEE   77 (122)
T ss_dssp             B-TT-EE-TTSEEEEEEESSEEEEEEESSSEEEEEE-GH
T ss_pred             ccCCCEEecCCcEEEEEECceeeecccceEEEEEEEccc
Confidence            578999999999999999999999999999999888533

GCV catalyses the catabolism of glycine in eukaryotes. A lipoyl group is attached to a completely conserved lysine residue. The H protein shuttles the methylamine group of glycine from the P protein to the T protein [].; GO: 0006546 glycine catabolic process, 0005960 glycine cleavage complex; PDB: 3KLR_A 2EDG_A 1ONL_B 2KA7_A 1ZKO_A 3TZU_C 3MXU_A 3A8I_F 3A8J_E 3A7A_B ....

>PRK09859 multidrug efflux system protein MdtE; Provisional

Probab=95.36  E-value=0.02  Score=59.03  Aligned_cols=64  Identities=27%  Similarity=0.332  Sum_probs=53.9

Q ss_pred             cceeeecccccCCccccCcchhhhhccc----------------------------------------------------
Q psy16142         96 MGTIVSWAKKEGDKLNEGDLLAEIETDK----------------------------------------------------  123 (426)
Q Consensus        96 ~g~i~~w~v~vGd~Ve~gd~L~~vetdK----------------------------------------------------  123 (426)
                      .|.|.+.++++||.|++||+|++|+..-                                                    
T Consensus        69 ~G~V~~i~v~~G~~VkkGqvLa~ld~~~~~~~l~~a~a~l~~a~a~~~~a~~~~~R~~~L~~~~~is~~~~d~a~~~~~~  148 (385)
T PRK09859         69 GGIIIKRNFIEGDKVNQGDSLYQIDPAPLQAELNSAKGSLAKALSTASNARITFNRQASLLKTNYVSRQDYDTARTQLNE  148 (385)
T ss_pred             cEEEEEEEcCCcCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH
Confidence            4889999999999999999999997420                                                    


Q ss_pred             -------------------ccceeecCCCeEEEEEeecCCCccccCCc--EEEEEEcC
Q psy16142        124 -------------------ATMGFETPEEGYLAKILVPAGSKDVPIGK--LVCIIVEN  160 (426)
Q Consensus       124 -------------------~~~ei~a~~~G~v~~i~v~~G~~~v~vG~--~l~~i~~~  160 (426)
                                         -...|.||++|+|.+.++..|+ .|..|+  +|+.|...
T Consensus       149 a~a~~~~a~a~l~~a~~~L~~t~I~APfdG~V~~~~v~~G~-~V~~g~~~~l~~i~~~  205 (385)
T PRK09859        149 AEANVTVAKAAVEQATINLQYANVTSPITGVSGKSSVTVGA-LVTANQADSLVTVQRL  205 (385)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCCEEECCCCeEEcceecCCCC-eECCCCCcceEEEEec
Confidence                               1147999999999999999999 899985  68887553

>PRK12784 hypothetical protein; Provisional

Probab=95.35  E-value=0.029  Score=44.58  Aligned_cols=64  Identities=14%  Similarity=0.159  Sum_probs=57.0

Q ss_pred             cceeeecccccCCccccCcchhhhhccc-ccceeecCCCeEEEEEeecCCCccccCCcEEEEEEcC
Q psy16142         96 MGTIVSWAKKEGDKLNEGDLLAEIETDK-ATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVEN  160 (426)
Q Consensus        96 ~g~i~~w~v~vGd~Ve~gd~L~~vetdK-~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~  160 (426)
                      .|.+-+.++.++++|.+.+.|+.|+++- .-..|.--++|.|..+.|.+|+ .|..+.+|+.++++
T Consensus        13 ~G~Vekifi~esSyVYEWEkL~~I~~~dg~le~v~vGiSG~I~~v~Ve~Gq-~i~~dtlL~~~edD   77 (84)
T PRK12784         13 EGKVEEIFVNESSYVYEWEKLMMIRKNNGELEKVAVGISGNIRLVNVVVGQ-QIHTDTLLVRLEDD   77 (84)
T ss_pred             ccEEEEEEEcCCceEEeeeeeeEEeecCCcEEEEEEeeeeeEEEEEeecCc-eecCCcEEEEEeec
Confidence            4788899999999999999999999974 4445888999999999999999 79999999999763

>PRK15030 multidrug efflux system transporter AcrA; Provisional

Probab=95.30  E-value=0.021  Score=59.15  Aligned_cols=64  Identities=25%  Similarity=0.332  Sum_probs=53.1

Q ss_pred             cceeeecccccCCccccCcchhhhhccc----------------------------------------------------
Q psy16142         96 MGTIVSWAKKEGDKLNEGDLLAEIETDK----------------------------------------------------  123 (426)
Q Consensus        96 ~g~i~~w~v~vGd~Ve~gd~L~~vetdK----------------------------------------------------  123 (426)
                      .|.|.++++++||.|++||+|++|+...                                                    
T Consensus        73 sG~V~~v~v~~Gd~VkkGqvLa~ld~~~~~~~l~~a~A~l~~A~a~l~~a~~~~~R~~~L~~~g~is~~~~d~a~~~~~~  152 (397)
T PRK15030         73 SGIILKRNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALADAQQ  152 (397)
T ss_pred             cEEEEEEEcCCCCEecCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHH
Confidence            3899999999999999999999986421                                                    


Q ss_pred             -------------------ccceeecCCCeEEEEEeecCCCccccCCcE--EEEEEcC
Q psy16142        124 -------------------ATMGFETPEEGYLAKILVPAGSKDVPIGKL--VCIIVEN  160 (426)
Q Consensus       124 -------------------~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~--l~~i~~~  160 (426)
                                         -...|.||++|+|.+..+++|+ .|..|++  |+.|...
T Consensus       153 a~a~~~~a~a~l~~a~~~l~~t~I~APfdG~V~~~~v~~G~-~V~~g~~~~l~~i~~~  209 (397)
T PRK15030        153 ANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGA-LVQNGQATALATVQQL  209 (397)
T ss_pred             HHHHHHHHHHHHHHHHHhhcCCEEEcCCCeEEeeeecCCCC-EECCCCCceEEEEEec
Confidence                               0136899999999999999999 8999985  6776543

>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase

Probab=95.25  E-value=0.029  Score=42.17  Aligned_cols=32  Identities=25%  Similarity=0.470  Sum_probs=29.7

Q ss_pred             eecCCCeEEEEEeecCCCccccCCcEEEEEEcC
Q psy16142        128 FETPEEGYLAKILVPAGSKDVPIGKLVCIIVEN  160 (426)
Q Consensus       128 i~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~  160 (426)
                      +.||.+|+|.++++++|+ .|+.|++|+.++..
T Consensus         2 v~a~~~G~v~~~~v~~G~-~v~~g~~l~~i~~~   33 (67)
T cd06850           2 VTAPMPGTVVKVLVKEGD-KVEAGQPLAVLEAM   33 (67)
T ss_pred             ccCCccEEEEEEEeCCCC-EECCCCEEEEEEcc
Confidence            689999999999999999 89999999999753

This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.

>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=95.19  E-value=0.04  Score=42.73  Aligned_cols=34  Identities=26%  Similarity=0.291  Sum_probs=31.3

Q ss_pred             eeecCCCeEEEEEeecCCCccccCCcEEEEEEcCC
Q psy16142        127 GFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENE  161 (426)
Q Consensus       127 ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~  161 (426)
                      .|.||..|+|.++++++|+ .|..|++|+.++...
T Consensus         3 ~i~a~~~G~i~~~~v~~G~-~V~~g~~l~~ve~~k   36 (70)
T PRK08225          3 KVYASMAGNVWKIVVKVGD-TVEEGQDVVILESMK   36 (70)
T ss_pred             eEeCCCCEEEEEEEeCCCC-EECCCCEEEEEEcCC
Confidence            5889999999999999999 899999999998754

>COG0509 GcvH Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]

Probab=95.13  E-value=0.011  Score=51.92  Aligned_cols=38  Identities=24%  Similarity=0.357  Sum_probs=35.3

Q ss_pred             ccccCCccccCcchhhhhcccccceeecCCCeEEEEEe
Q psy16142        103 AKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKIL  140 (426)
Q Consensus       103 ~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~  140 (426)
                      +.++|+.|++|+.++.||+-|+..+|.||.+|+|.++.
T Consensus        46 lpe~G~~v~~g~~~~~vESvKaasdvyaPvsGeVvevN   83 (131)
T COG0509          46 LPEVGAEVKAGESLAVVESVKAASDVYAPVSGEVVEVN   83 (131)
T ss_pred             cCCCCCeecCCCeEEEEEeeeeeccccCCCceeEEEec
Confidence            45889999999999999999999999999999998775

>PRK11578 macrolide transporter subunit MacA; Provisional

Probab=95.09  E-value=0.026  Score=57.88  Aligned_cols=34  Identities=15%  Similarity=0.204  Sum_probs=28.6

Q ss_pred             eeecCCCeEEEEEeecCCCccccCC---cEEEEEEcCC
Q psy16142        127 GFETPEEGYLAKILVPAGSKDVPIG---KLVCIIVENE  161 (426)
Q Consensus       127 ei~a~~~G~v~~i~v~~G~~~v~vG---~~l~~i~~~~  161 (426)
                      .|.||++|+|..+.+..|+ .|..|   ++|+.|...+
T Consensus       185 ~I~AP~dG~V~~~~~~~G~-~V~~~~~~~~l~~i~~~~  221 (370)
T PRK11578        185 RIVAPMAGEVTQITTLQGQ-TVIAAQQAPNILTLADMS  221 (370)
T ss_pred             EEECCCCcEEEeeecCCCc-EeecccCCceEEEEecCC
Confidence            7999999999999999999 89766   4788876543

>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]

Probab=95.07  E-value=0.031  Score=49.84  Aligned_cols=36  Identities=25%  Similarity=0.326  Sum_probs=32.8

Q ss_pred             ccceeecCCCeEEEEEeecCCCccccCCcEEEEEEcC
Q psy16142        124 ATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVEN  160 (426)
Q Consensus       124 ~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~  160 (426)
                      ....|.||..|++.+++|++|| .|+.||+||+|+.-
T Consensus        69 ~~~~V~SPm~Gtv~~~~V~vGd-~V~~Gq~l~IiEAM  104 (140)
T COG0511          69 GGTQVTSPMVGTVYKPFVEVGD-TVKAGQTLAIIEAM  104 (140)
T ss_pred             cCceEecCcceEEEEEeeccCC-EEcCCCEEEEEEee
Confidence            3567999999999999999999 89999999999863

>PRK11556 multidrug efflux system subunit MdtA; Provisional

Probab=94.68  E-value=0.034  Score=58.16  Aligned_cols=63  Identities=25%  Similarity=0.440  Sum_probs=52.6

Q ss_pred             cceeeecccccCCccccCcchhhhhccc----------------------------------------------------
Q psy16142         96 MGTIVSWAKKEGDKLNEGDLLAEIETDK----------------------------------------------------  123 (426)
Q Consensus        96 ~g~i~~w~v~vGd~Ve~gd~L~~vetdK----------------------------------------------------  123 (426)
                      .|.|.++++++||.|++||+|++|....                                                    
T Consensus        95 sG~V~~i~v~eG~~VkkGq~La~ld~~~~~~~l~qaqa~l~~a~a~l~~A~~~~~R~~~L~~~g~is~~~ld~~~~~~~~  174 (415)
T PRK11556         95 DGQLMALHFQEGQQVKAGDLLAEIDPRPFKVALAQAQGQLAKDQATLANARRDLARYQQLAKTNLVSRQELDAQQALVSE  174 (415)
T ss_pred             cEEEEEEECCCCCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH
Confidence            4899999999999999999999985421                                                    


Q ss_pred             -------------------ccceeecCCCeEEEEEeecCCCccccCCc--EEEEEEc
Q psy16142        124 -------------------ATMGFETPEEGYLAKILVPAGSKDVPIGK--LVCIIVE  159 (426)
Q Consensus       124 -------------------~~~ei~a~~~G~v~~i~v~~G~~~v~vG~--~l~~i~~  159 (426)
                                         -...|.||++|+|..+.+..|+ .|..|+  +|+.|..
T Consensus       175 a~a~l~~a~a~l~~a~~~L~~~~I~AP~~G~V~~~~v~~G~-~V~~g~~~~l~~i~~  230 (415)
T PRK11556        175 TEGTIKADEASVASAQLQLDYSRITAPISGRVGLKQVDVGN-QISSGDTTGIVVITQ  230 (415)
T ss_pred             HHHHHHHHHHHHHHHHHhhhCCEEECCCCeEEeccCcCCCc-eecCCCCceeEEEec
Confidence                               0237999999999999999999 899984  6777754

>PF13437 HlyD_3: HlyD family secretion protein

Probab=94.42  E-value=0.064  Score=44.52  Aligned_cols=34  Identities=26%  Similarity=0.441  Sum_probs=31.2

Q ss_pred             eeecCCCeEEEEEeecCCCccccCCcEEEEEEcCC
Q psy16142        127 GFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENE  161 (426)
Q Consensus       127 ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~  161 (426)
                      +|.||++|+|..+.+++|+ .|..|++|+.|...+
T Consensus         1 ~i~AP~~G~V~~~~~~~G~-~v~~g~~l~~i~~~~   34 (105)
T PF13437_consen    1 TIRAPFDGVVVSINVQPGE-VVSAGQPLAEIVDTD   34 (105)
T ss_pred             CEECCCCEEEEEEeCCCCC-EECCCCEEEEEEccc
Confidence            4889999999999999999 899999999998753

>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family

Probab=94.36  E-value=0.06  Score=52.51  Aligned_cols=56  Identities=23%  Similarity=0.362  Sum_probs=48.6

Q ss_pred             eecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEcCC
Q psy16142        100 VSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENE  161 (426)
Q Consensus       100 ~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~  161 (426)
                      .+..++.||.|++||+|+.|+.    .+|.||.+|+|..+ +++|- .|..|.-|+.|++-.
T Consensus       175 ~~~~~~IGd~V~KGqvLa~I~~----~~V~APidGIVrGl-irdG~-~V~~G~Ki~dIDPR~  230 (256)
T TIGR03309       175 VTPTKAIGDSVKKGDVIATVGD----VPVVAPIDGLLRGL-IHEGL-TVTEGLKIGDVDPRG  230 (256)
T ss_pred             EeeccCCCCEEeCCCEEEEEcC----EEEEccCCeEEEEE-ecCCC-CcCCCCEEEEECCCC
Confidence            4558999999999999999975    69999999999765 78898 799999999996643

Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins.

>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=94.03  E-value=0.094  Score=46.25  Aligned_cols=36  Identities=22%  Similarity=0.361  Sum_probs=32.9

Q ss_pred             cceeecCCCeEEEEEeecCCCccccCCcEEEEEEcCC
Q psy16142        125 TMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENE  161 (426)
Q Consensus       125 ~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~  161 (426)
                      ...|.||.+|+|.++++++|+ .|..|++|+.++...
T Consensus        61 ~~~v~Ap~~G~V~~i~V~~Gd-~V~~Gq~L~~lEamK   96 (130)
T PRK06549         61 ADAMPSPMPGTILKVLVAVGD-QVTENQPLLILEAMK   96 (130)
T ss_pred             CcEEECCCCEEEEEEEeCCCC-EECCCCEEEEEeccC
Confidence            567999999999999999999 899999999998653

>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family

Probab=93.93  E-value=0.077  Score=53.20  Aligned_cols=33  Identities=15%  Similarity=0.177  Sum_probs=28.5

Q ss_pred             eeecCCCeEEEEEeecCCCccccCCcEEEEEEcCC
Q psy16142        127 GFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENE  161 (426)
Q Consensus       127 ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~  161 (426)
                      .|.||++|+|..+.+.+|+ .|.. ++|+.|...+
T Consensus       206 ~i~AP~dG~V~~~~~~~G~-~v~~-~~l~~i~~~~  238 (327)
T TIGR02971       206 YVKAPIDGRVLKIHAREGE-VIGS-EGILEMGDTS  238 (327)
T ss_pred             EEECCCCeEEEEEecCCCC-ccCC-CccEEEecCC
Confidence            5789999999999999998 8886 8888887644

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.

>PF00302 CAT: Chloramphenicol acetyltransferase; InterPro: IPR001707 Chloramphenicol acetyltransferase (CAT) (2

Probab=93.66  E-value=0.73  Score=43.77  Aligned_cols=83  Identities=20%  Similarity=0.181  Sum_probs=63.3

Q ss_pred             cccHHHHHHHHHHHHhhhcccccceeeCC-ceEEcCCCcEEEEeec-CCceEeecccCcCCCCHHHHHhccccccccccC
Q psy16142        319 KLSINDFIIKATALASRRVPEANSSWQDT-FIREYHSVDVSVAVNT-DKGLFTPIVFDADKKGLVDISNDSRSLISFRRP  396 (426)
Q Consensus       319 ~~s~~~~~~ka~~~al~~~p~~n~~~~~~-~i~~~~~v~i~iAv~~-~~GL~~pvi~~a~~~~l~~i~~~~~~~~~~~~~  396 (426)
                      ++++...++.++.+|+.++|+|+-++.++ .+.+|+.+|.+.+|-. +++.+.-+.-. -.-++.++.+           
T Consensus        47 ~~~Ff~~~ly~i~ka~N~~~efR~ri~~~g~v~~~d~i~ps~Tv~~~~~~tFs~~~~~-y~~df~~F~~-----------  114 (206)
T PF00302_consen   47 GLSFFPAYLYAIMKAANEIPEFRYRIVDDGEVVYYDRIDPSYTVFHKDDETFSFCWTE-YDEDFEEFYA-----------  114 (206)
T ss_dssp             T--HHHHHHHHHHHHHTTSGGGCEEEETTSCEEEESS-EEEEEEEETTTTEEEEEEE----SSHHHHHH-----------
T ss_pred             CCCcHHHHHHHHHHHHhcCHHHheeeeCCCcEEEECCcceeeeEEeCCCCeEEEEEec-CCCCHHHHHH-----------
Confidence            68999999999999999999999999987 9999999999999975 45666544222 2348899999           


Q ss_pred             cCCccchHHHHHHHHHHHcC-CCCcc
Q psy16142        397 VKFSEESNDVKTLAAKAKEG-KLQPH  421 (426)
Q Consensus       397 ~~~~~~~~~~~~l~~~a~~~-~l~~~  421 (426)
                              +.....+++++. .|.++
T Consensus       115 --------~~~~~~~~~~~~~~~~~~  132 (206)
T PF00302_consen  115 --------NYEADIERYKESKGLFPK  132 (206)
T ss_dssp             --------HHHHHHHHHTTS-SSSTT
T ss_pred             --------HHHHHHHHHhccccccCC
Confidence                    888888888764 45443

3.1.28 from EC) [] catalyzes the acetyl-CoA dependent acetylation of chloramphenicol (Cm), an antibiotic which inhibits prokaryotic peptidyltransferase activity. Acetylation of Cm by CAT inactivates the antibiotic. A histidine residue, located in the C-terminal section of the enzyme, plays a central role in its catalytic mechanism. There is a second family of CAT [], evolutionary unrelated to the main family described above. These CAT belong to the bacterial hexapeptide-repeat containing-transferases family (see IPR001451 from INTERPRO). The crystal structure of the type III enzyme from Escherichia coli with chloramphenicol bound has been determined. CAT is a trimer of identical subunits (monomer Mr 25,000) and the trimeric structure is stabilised by a number of hydrogen bonds, some of which result in the extension of a beta-sheet across the subunit interface. Chloramphenicol binds in a deep pocket located at the boundary between adjacent subunits of the trimer, such that the majority of residues forming the binding pocket belong to one subunit while the catalytically essential histidine belongs to the adjacent subunit. His195 is appropriately positioned to act as a general base catalyst in the reaction, and the required tautomeric stabilisation is provided by an unusual interaction with a main-chain carbonyl oxygen [].; GO: 0008811 chloramphenicol O-acetyltransferase activity; PDB: 1CIA_A 4CLA_A 1QCA_A 2CLA_A 1CLA_A 3CLA_A 3U9F_K 1PD5_F 1Q23_F 3U9B_F ....

>PF13375 RnfC_N: RnfC Barrel sandwich hybrid domain

Probab=93.56  E-value=0.12  Score=43.56  Aligned_cols=46  Identities=26%  Similarity=0.298  Sum_probs=39.1

Q ss_pred             ceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecC
Q psy16142         97 GTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPA  143 (426)
Q Consensus        97 g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~  143 (426)
                      |.-.+-++++||.|..||.|++.+. -+...|.|+.+|+|..|.-..
T Consensus        39 G~~~~p~V~~Gd~V~~GQ~Ia~~~~-~~sa~iHAsvSG~V~~I~~~~   84 (101)
T PF13375_consen   39 GAPAEPVVKVGDKVKKGQLIAEAEG-FLSAPIHASVSGTVTAIEKRP   84 (101)
T ss_pred             CCcceEEEcCCCEEcCCCEEEecCC-CcEeeEEcCCCeEEEEEeeeE
Confidence            4556889999999999999999975 668899999999999885443

>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C

Probab=93.55  E-value=0.034  Score=55.16  Aligned_cols=33  Identities=27%  Similarity=0.422  Sum_probs=26.4

Q ss_pred             eecCCCeEEE-------------------------EEeecCCCccccCCcEEEEEEcCC
Q psy16142        128 FETPEEGYLA-------------------------KILVPAGSKDVPIGKLVCIIVENE  161 (426)
Q Consensus       128 i~a~~~G~v~-------------------------~i~v~~G~~~v~vG~~l~~i~~~~  161 (426)
                      |.||++|+|.                         ++.+.+|+ .|..|++|+.|....
T Consensus       137 i~Ap~~G~V~~~~d~~e~~~~~~i~~~~~~~~~~~~~~~~~g~-~v~~g~~l~~i~~~~  194 (328)
T PF12700_consen  137 IKAPFDGVVSYSIDGYENLNEDSIDPEDIDQANYSKINVNPGQ-YVAAGQPLFTIADLS  194 (328)
T ss_dssp             EE-SSSEEEE------------EES----------E-TT-TT--EETSTTCSEEEEEES
T ss_pred             cccchhhhccccccccccccccccccccccccccceeccCCCC-EECCCceeeeeccCC
Confidence            9999999999                         99999999 899999999997543

...

>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like

Probab=93.50  E-value=0.03  Score=40.92  Aligned_cols=30  Identities=27%  Similarity=0.458  Sum_probs=26.5

Q ss_pred             cceeeecccccCCccccCcchhhhhccccc
Q psy16142         96 MGTIVSWAKKEGDKLNEGDLLAEIETDKAT  125 (426)
Q Consensus        96 ~g~i~~w~v~vGd~Ve~gd~L~~vetdK~~  125 (426)
                      .|.|..|++++|+.|++||+|+++++....
T Consensus        10 ~G~V~~v~V~~G~~VkkGd~L~~ld~~~~~   39 (50)
T PF13533_consen   10 SGRVESVYVKEGQQVKKGDVLLVLDSPDLQ   39 (50)
T ss_pred             CEEEEEEEecCCCEEcCCCEEEEECcHHHH
Confidence            389999999999999999999999876543

>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid

Probab=93.43  E-value=0.11  Score=41.02  Aligned_cols=35  Identities=23%  Similarity=0.272  Sum_probs=29.5

Q ss_pred             eeecCCCeEEEE------EeecCCCccccCCcEEEEEEcCCc
Q psy16142        127 GFETPEEGYLAK------ILVPAGSKDVPIGKLVCIIVENES  162 (426)
Q Consensus       127 ei~a~~~G~v~~------i~v~~G~~~v~vG~~l~~i~~~~~  162 (426)
                      +|.+|..|.+.+      +++++|+ .|..|++|+.|+....
T Consensus         2 ~i~~P~~G~~~~~~~i~~~~v~~G~-~V~~G~~l~~iet~K~   42 (74)
T PF00364_consen    2 EIKAPMLGEVMEEGTITKWLVEEGD-KVKKGDPLAEIETMKM   42 (74)
T ss_dssp             EEEESSSSEEEEEEEEEEESSSTTE-EESTTSEEEEEESSSE
T ss_pred             EEECCCCccEEEecceeEEEECCCC-EEEcCceEEEEEcCcc
Confidence            577888776555      9999999 8999999999987654

Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....

>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=92.85  E-value=0.16  Score=46.02  Aligned_cols=35  Identities=26%  Similarity=0.392  Sum_probs=32.0

Q ss_pred             ceeecCCCeEEEEEeecCCCccccCCcEEEEEEcCC
Q psy16142        126 MGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENE  161 (426)
Q Consensus       126 ~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~  161 (426)
                      ..|.||..|+|.++++++|| .|..|++|+.++...
T Consensus        85 ~~v~ap~~G~I~~~~V~~Gd-~V~~Gq~l~~iEamK  119 (153)
T PRK05641         85 NVVTAPMPGKILRILVREGQ-QVKVGQGLLILEAMK  119 (153)
T ss_pred             CEEECCCCeEEEEEEeCCCC-EEcCCCEEEEEeecc
Confidence            56999999999999999999 899999999997643

>PF00529 HlyD: HlyD family secretion protein the corresponding Prosite entry

Probab=92.71  E-value=0.083  Score=51.79  Aligned_cols=34  Identities=21%  Similarity=0.292  Sum_probs=24.0

Q ss_pred             ceeecCCCeEEEEEeecCCCccccCCcEEEEEEcC
Q psy16142        126 MGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVEN  160 (426)
Q Consensus       126 ~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~  160 (426)
                      ..|.++..|+|.+|+|++|+ .|+.|++|+.|++.
T Consensus         2 ~~Vq~~~~G~V~~i~V~eG~-~VkkGq~L~~LD~~   35 (305)
T PF00529_consen    2 KIVQSLVGGIVTEILVKEGQ-RVKKGQVLARLDPT   35 (305)
T ss_dssp             EEE--SS-EEEEEE-S-TTE-EE-TTSECEEE--H
T ss_pred             EEEeCCCCeEEEEEEccCcC-EEeCCCEEEEEEee
Confidence            46889999999999999999 89999999999854

; InterPro: IPR006143 This entry represents a large family of polypeptides, the MFP (for membrane fusion protein) family. MFPs are a component of the of the RND family of transporters (RND refers to resistance, nodulation, and cell division). MFPs are proposed to span the periplasm in some way linking the inner and outer membranes []. However, some members of this family are found in Gram-positive bacteria, where there is no outer membrane. MFPs are involved in the export of a variety of compounds, from drug molecules to large polypeptides, and are united by their similar overall structural organisation, combined with some conserved regions []. This family includes: Haemolysin secretion protein D (HlyD) from Escherichia coli. Lactococcin A secretion protein LcnD from Lactococcus lactis []. RTX-I toxin determinant D from Actinobacillus pleuropneumoniae. Calmodulin-sensitive adenylate cyclase-haemolysin (cyclolysin) CyaD from Bordetella pertussis. Colicin V secretion protein CvaA from E. coli []. Proteases secretion protein PrtE from Erwinia chrysanthemi []. Alkaline protease secretion protein AprE from Pseudomonas aeruginosa []. Several multidrug resistance proteins []. ; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 1T5E_E 1VF7_K 2V4D_I 4DK1_C 2F1M_B.

>PRK07051 hypothetical protein; Validated

Probab=92.37  E-value=0.19  Score=40.20  Aligned_cols=37  Identities=24%  Similarity=0.315  Sum_probs=33.0

Q ss_pred             ccceeecCCCeEEEE-------EeecCCCccccCCcEEEEEEcCC
Q psy16142        124 ATMGFETPEEGYLAK-------ILVPAGSKDVPIGKLVCIIVENE  161 (426)
Q Consensus       124 ~~~ei~a~~~G~v~~-------i~v~~G~~~v~vG~~l~~i~~~~  161 (426)
                      +..++.||..|++..       +++++|+ .|..|++|+.++...
T Consensus         2 ~~~~~~ap~~g~~~~~~~~~~~~~v~~Gd-~V~~g~~l~~ve~~k   45 (80)
T PRK07051          2 AQHEIVSPLPGTFYRRPSPDAPPYVEVGD-AVAAGDVVGLIEVMK   45 (80)
T ss_pred             CccEEeCCCceEEEecCCCCCCCccCCCC-EECCCCEEEEEEEcc
Confidence            356799999999999       9999999 899999999998753

>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases

Probab=92.10  E-value=0.18  Score=51.84  Aligned_cols=57  Identities=26%  Similarity=0.394  Sum_probs=39.2

Q ss_pred             eeeecccccCCccccCcchhhhh----cccccceeecCCCeEEEEEeecCCCccccCCcEEEEE
Q psy16142         98 TIVSWAKKEGDKLNEGDLLAEIE----TDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCII  157 (426)
Q Consensus        98 ~i~~w~v~vGd~Ve~gd~L~~ve----tdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i  157 (426)
                      =+..+.++.||.|++||.|++|=    .+....+|.||.+|+|  +.....- .|..|+.|+.|
T Consensus       298 Gl~~~~~~~Gd~V~~G~~lg~I~d~~g~~~~~~~v~Ap~dGiv--~~~~~~~-~V~~G~~l~~I  358 (359)
T cd06250         298 GMVVYRAAPGDWVEAGDVLAEILDPLGDGVGPVEIRAPTDGLL--FARASRR-FVRAGDELAKI  358 (359)
T ss_pred             eEEEEecCCCCEecCCCEEEEEECCCCCccceeEEECCCCcEE--EEecCCc-cccCCCeEEEe
Confidence            34567788888888888888762    1233444688888888  4445555 67888888765

This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding

>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A)

Probab=91.95  E-value=0.16  Score=50.97  Aligned_cols=35  Identities=11%  Similarity=0.162  Sum_probs=32.5

Q ss_pred             cceeecCCCeEEEEEeecCCCccccCCcEEEEEEcC
Q psy16142        125 TMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVEN  160 (426)
Q Consensus       125 ~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~  160 (426)
                      .+.|.|+.+|+|.++++++|+ .|+.|++|+.|+..
T Consensus        42 ~~~v~a~~~G~V~~i~v~~G~-~V~kGq~L~~ld~~   76 (334)
T TIGR00998        42 QLQVSSQVSGSVIEVNVDDTD-YVKQGDVLVRLDPT   76 (334)
T ss_pred             eEEEcccCceEEEEEEeCCCC-EEcCCCEEEEECch
Confidence            678999999999999999999 89999999999754

>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases

Probab=91.70  E-value=0.22  Score=49.80  Aligned_cols=56  Identities=30%  Similarity=0.322  Sum_probs=33.9

Q ss_pred             eeecccccCCccccCcchhhhhc---ccccceeecCCCeEEEEEeecCCCccccCCcEEEEE
Q psy16142         99 IVSWAKKEGDKLNEGDLLAEIET---DKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCII  157 (426)
Q Consensus        99 i~~w~v~vGd~Ve~gd~L~~vet---dK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i  157 (426)
                      +..+.++.||.|++||.|.+|=.   +....++.||.+|+|..  ....- .|..|+.|+.|
T Consensus       239 l~~~~~~~G~~V~~Gq~lg~i~dp~~g~~~~~v~Ap~dGiv~~--~~~~p-~v~~G~~l~~i  297 (298)
T cd06253         239 IFVPAKHLGDIVKRGDVIGEIVDPLEGEVIEEVIAPCDGILFT--LREYP-LVYEGSLVARI  297 (298)
T ss_pred             EEEECcCCCCEECCCCEEEEEeCCCCCCeeEEEEcCCCeEEEE--eecCC-eecCCceEEEe
Confidence            34555677777777777776622   33455677777777733  33444 56677776654

ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.

>PRK10476 multidrug resistance protein MdtN; Provisional

Probab=90.44  E-value=0.3  Score=49.58  Aligned_cols=40  Identities=20%  Similarity=0.281  Sum_probs=34.8

Q ss_pred             hhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEcC
Q psy16142        118 EIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVEN  160 (426)
Q Consensus       118 ~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~  160 (426)
                      .|+++  .+.|.++.+|+|.++++++|+ .|+.|++|+.|+..
T Consensus        43 ~v~~~--~v~v~~~v~G~V~~v~V~~G~-~VkkGq~L~~ld~~   82 (346)
T PRK10476         43 YIDAD--VVHVASEVGGRIVELAVTENQ-AVKKGDLLFRIDPR   82 (346)
T ss_pred             EEEee--eEEEcccCceEEEEEEeCCCC-EEcCCCEEEEECcH
Confidence            34554  678999999999999999999 89999999999754

>COG3608 Predicted deacylase [General function prediction only]

Probab=90.44  E-value=0.35  Score=48.99  Aligned_cols=61  Identities=25%  Similarity=0.369  Sum_probs=48.5

Q ss_pred             cceeeecccccCCccccCcchhhhhc---ccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEc
Q psy16142         96 MGTIVSWAKKEGDKLNEGDLLAEIET---DKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVE  159 (426)
Q Consensus        96 ~g~i~~w~v~vGd~Ve~gd~L~~vet---dK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~  159 (426)
                      .+=+++++++.||.|++||.|+.|-.   -+...||.|+.+|+|...... +  .|+.|+.++.+..
T Consensus       263 ~~G~v~~~v~lGd~VeaG~~la~i~~~~~~~~~~eirA~~~G~i~~~r~~-~--~v~~Gdl~~~v~~  326 (331)
T COG3608         263 AGGLVEFLVDLGDKVEAGDVLATIHDPPLGEGEAEIRAPVSGIIIARRSL-R--LVQPGDLLKVVGR  326 (331)
T ss_pred             CCceEEEeecCCCcccCCCeEEEEecCCCCCcceEEEcCCCceEEEEeec-c--ccCCCCeeeeecc
Confidence            34567999999999999999998744   488999999999999776433 3  4788877777654

>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family

Probab=90.29  E-value=0.28  Score=49.12  Aligned_cols=41  Identities=20%  Similarity=0.427  Sum_probs=34.2

Q ss_pred             hhcccccceeecCCC---eEEEEEeecCCCccccCCcEEEEEEcC
Q psy16142        119 IETDKATMGFETPEE---GYLAKILVPAGSKDVPIGKLVCIIVEN  160 (426)
Q Consensus       119 vetdK~~~ei~a~~~---G~v~~i~v~~G~~~v~vG~~l~~i~~~  160 (426)
                      |+...-...|.++.+   |+|.+|+|++|+ .|+.|++|+.|+..
T Consensus         7 v~p~~~~~~v~~~~~~~~G~V~~i~V~eG~-~V~~G~~L~~ld~~   50 (327)
T TIGR02971         7 LEPEGEVVAVAAPSSGGTDRIKKLLVAEGD-RVQAGQVLAELDSR   50 (327)
T ss_pred             EeecCceEEecCCCCCCCcEEEEEEccCCC-EecCCcEEEEecCc
Confidence            333333457889999   999999999999 89999999999765

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.

>COG4845 Chloramphenicol O-acetyltransferase [Defense mechanisms]

Probab=90.22  E-value=1.4  Score=41.62  Aligned_cols=76  Identities=13%  Similarity=0.109  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHHHHhCCcccHHHHHHHHHHHHhhhcccccceeeCCceEEcCCCcEEEEeecCC-ceEeecccCcCCCCHH
Q psy16142        303 IKLREQMNKALEKRGAKLSINDFIIKATALASRRVPEANSSWQDTFIREYHSVDVSVAVNTDK-GLFTPIVFDADKKGLV  381 (426)
Q Consensus       303 ~~lr~~~~~~~~~~~~~~s~~~~~~ka~~~al~~~p~~n~~~~~~~i~~~~~v~i~iAv~~~~-GL~~pvi~~a~~~~l~  381 (426)
                      ..+|..+++      .+++++.+++.|+.+++.+|++|+-+++++...+++.++..+.|-.++ +++.-+--+ -+.+..
T Consensus        40 tn~~~~vk~------~~l~Ff~a~l~avtr~~n~~~EFRlr~~~~~~~~~d~v~p~~tv~~~~~e~Fs~l~~e-~~~~~~  112 (219)
T COG4845          40 TNFYGYVKE------NGLSFFPALLYAVTRCANRHQEFRLRIQNGQLGYWDNVPPMYTVFHGETETFSVLWTE-YQEDYE  112 (219)
T ss_pred             hHHHHHHHH------cCCcchHHHHHHHHHHhcccHHhHhhhcCCeeEEeecCCcceEEEcCCCcEEEEEecc-ccccHH
Confidence            445555543      278999999999999999999999999999999999999999999855 566644333 556777


Q ss_pred             HHHh
Q psy16142        382 DISN  385 (426)
Q Consensus       382 ~i~~  385 (426)
                      ++.+
T Consensus       113 dF~q  116 (219)
T COG4845         113 DFAQ  116 (219)
T ss_pred             HHHH
Confidence            7777

>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases

Probab=90.17  E-value=0.41  Score=47.53  Aligned_cols=55  Identities=25%  Similarity=0.279  Sum_probs=31.4

Q ss_pred             eecccccCCccccCcchhhhhcc--cccceeecCCCeEEEEEeecCCCccccCCcEEEEE
Q psy16142        100 VSWAKKEGDKLNEGDLLAEIETD--KATMGFETPEEGYLAKILVPAGSKDVPIGKLVCII  157 (426)
Q Consensus       100 ~~w~v~vGd~Ve~gd~L~~vetd--K~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i  157 (426)
                      ..+.++.||.|++||+|+.|-.-  ....+|.||.+|+|..+  ...- .|..|+.|+.|
T Consensus       230 ~~~~~~~Gd~V~~G~~ig~i~d~~~~~~~~v~ap~~G~v~~~--~~~~-~v~~G~~l~~i  286 (287)
T cd06251         230 LRSLVKLGDKVKKGQLLATITDPFGEEEAEVKAPFDGIVIGR--NNLP-LVNEGDALFHI  286 (287)
T ss_pred             EEEecCCCCEECCCCEEEEEECCCCCceEEEECCCCeEEEEe--cCCC-ccCCCCEEEEe
Confidence            34566677777777777666221  22356777777777333  2333 46666666654

ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.

>TIGR02994 ectoine_eutE ectoine utilization protein EutE

Probab=90.13  E-value=0.39  Score=48.78  Aligned_cols=55  Identities=18%  Similarity=0.387  Sum_probs=39.7

Q ss_pred             eecccccCCccccCcchhhhhc----ccccceeecCCCeEEEEEeecCCCccccCCcEEEEE
Q psy16142        100 VSWAKKEGDKLNEGDLLAEIET----DKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCII  157 (426)
Q Consensus       100 ~~w~v~vGd~Ve~gd~L~~vet----dK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i  157 (426)
                      ..+.++.||.|++||.|.+|=.    .....+|.||.+|+|..  ....- .|..|+.|+.|
T Consensus       266 ~~~~v~~G~~V~~G~~lg~I~d~~~~G~~~~~i~Ap~dGiV~~--~~~~~-~V~~Gd~l~~i  324 (325)
T TIGR02994       266 IEFMIDLGDPVSKGDVIARVYPVGRTGVAPVEYRAKRDGLLAA--RHFPG-LIKSGDCIAVL  324 (325)
T ss_pred             EEEecCCCCEeCCCCEEEEEECCCCCCCceEEEEeCCCcEEEE--EeCCC-ccCCCCEEEEe
Confidence            4677888888888888887732    23456788888888854  34444 68888888765

Members of this family, part of the succinylglutamate desuccinylase / aspartoacylase family (pfam04952), belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it the operon is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida.

>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases

Probab=89.93  E-value=0.48  Score=47.79  Aligned_cols=58  Identities=17%  Similarity=0.302  Sum_probs=42.1

Q ss_pred             eeeecccccCCccccCcchhhhhc----ccccceeecCCCeEEEEEeecCCCccccCCcEEEEEE
Q psy16142         98 TIVSWAKKEGDKLNEGDLLAEIET----DKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIV  158 (426)
Q Consensus        98 ~i~~w~v~vGd~Ve~gd~L~~vet----dK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~  158 (426)
                      =+..+.++.||.|++||+|.+|-.    .....+|.||.+|+|.-.  ...- .|..|+.|+.|.
T Consensus       253 G~~~~~~~~G~~V~~G~~lg~i~d~~~~g~~~~~v~Ap~~Giv~~~--~~~~-~v~~G~~l~~i~  314 (316)
T cd06252         253 GLFEPLVDLGDEVSAGQVAGRIHFPERPGRPPLEIRAPDGGVLAAR--RPPG-LVRRGDCLAVLA  314 (316)
T ss_pred             eEEEEecCCCCEEcCCCEEEEEECCCCCCCceEEEEcCCCeEEEEe--eCCC-ccCCCCEEEEEe
Confidence            345677889999999999998732    234567999999998543  3343 588888888774

ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.

>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit

Probab=89.70  E-value=0.34  Score=47.85  Aligned_cols=35  Identities=20%  Similarity=0.359  Sum_probs=32.0

Q ss_pred             cceeecCCCeEEEEEeecCCCccccCCcEEEEEEcC
Q psy16142        125 TMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVEN  160 (426)
Q Consensus       125 ~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~  160 (426)
                      +..|.+|.+|+|.++++++|+ .|+.|++|+.+...
T Consensus        26 ~~~v~a~~~G~V~~i~v~~G~-~V~kG~~L~~l~~~   60 (322)
T TIGR01730        26 EADLAAEVAGKITKISVREGQ-KVKKGQVLARLDDD   60 (322)
T ss_pred             EEEEEccccEEEEEEEcCCCC-EEcCCCEEEEECCH
Confidence            467999999999999999999 89999999999754

This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.

>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional

Probab=89.18  E-value=0.37  Score=48.39  Aligned_cols=35  Identities=14%  Similarity=0.233  Sum_probs=32.0

Q ss_pred             ceeecCCCeEEEEEeecCCCccccCCcEEEEEEcCC
Q psy16142        126 MGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENE  161 (426)
Q Consensus       126 ~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~  161 (426)
                      +.|.++.+|.|.++++++|+ .|+.|++|+.|+..+
T Consensus        48 v~i~~~v~G~V~~v~V~~Gd-~VkkGqvLa~Ld~~~   82 (310)
T PRK10559         48 VAIAPDVSGLITQVNVHDNQ-LVKKGQVLFTIDQPR   82 (310)
T ss_pred             EEEccCCceEEEEEEeCCcC-EEcCCCEEEEECcHH
Confidence            56999999999999999999 899999999997643

>PRK15136 multidrug efflux system protein EmrA; Provisional

Probab=89.16  E-value=0.37  Score=49.98  Aligned_cols=35  Identities=11%  Similarity=0.154  Sum_probs=32.7

Q ss_pred             cceeecCCCeEEEEEeecCCCccccCCcEEEEEEcC
Q psy16142        125 TMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVEN  160 (426)
Q Consensus       125 ~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~  160 (426)
                      .+.|.++.+|+|.+++|++|+ .|+.|++|+.|+..
T Consensus        61 ~v~v~a~v~G~V~~v~V~~Gd-~VkkGqvL~~LD~~   95 (390)
T PRK15136         61 QVQIMSQVSGSVTKVWADNTD-FVKEGDVLVTLDPT   95 (390)
T ss_pred             EEEEeccCCeEEEEEEcCCCC-EECCCCEEEEECcH
Confidence            778999999999999999999 89999999999764

>PRK03598 putative efflux pump membrane fusion protein; Provisional

Probab=88.44  E-value=0.49  Score=47.62  Aligned_cols=35  Identities=23%  Similarity=0.296  Sum_probs=32.3

Q ss_pred             cceeecCCCeEEEEEeecCCCccccCCcEEEEEEcC
Q psy16142        125 TMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVEN  160 (426)
Q Consensus       125 ~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~  160 (426)
                      .+.|.++..|+|.++++++|+ .|+.|++|+.|+..
T Consensus        43 ~i~v~a~~~G~V~~i~v~~Gd-~V~kG~~L~~ld~~   77 (331)
T PRK03598         43 TVNLGFRVGGRLASLAVDEGD-AVKAGQVLGELDAA   77 (331)
T ss_pred             EEEeecccCcEEEEEEcCCCC-EEcCCCEEEEEChH
Confidence            668999999999999999999 89999999999653

>PRK13757 chloramphenicol acetyltransferase; Provisional

Probab=87.62  E-value=3.6  Score=39.48  Aligned_cols=83  Identities=16%  Similarity=0.067  Sum_probs=63.1

Q ss_pred             CcccHHHHHHHHHHHHhhhcccccceeeCCceEEcCCCcEEEEeecCC-ceEeecccCcCCCCHHHHHhccccccccccC
Q psy16142        318 AKLSINDFIIKATALASRRVPEANSSWQDTFIREYHSVDVSVAVNTDK-GLFTPIVFDADKKGLVDISNDSRSLISFRRP  396 (426)
Q Consensus       318 ~~~s~~~~~~ka~~~al~~~p~~n~~~~~~~i~~~~~v~i~iAv~~~~-GL~~pvi~~a~~~~l~~i~~~~~~~~~~~~~  396 (426)
                      .++++...++.|+.+|+-++|+|+-++.++.+..|+.+|.+.+|-.++ +.+.-+-- .-.-++.++.+           
T Consensus        51 ~~~~fy~~~ly~v~kavN~~~eFR~r~~~~~v~~~D~i~ps~Ti~~~~~~tFs~~~~-~y~~df~~F~~-----------  118 (219)
T PRK13757         51 NKHKFYPAFIHILARLMNAHPEFRMAMKDGELVIWDSVHPCYTVFHEQTETFSSLWS-EYHDDFRQFLH-----------  118 (219)
T ss_pred             cCCChHHHHHHHHHHHHhcCHhHheEEECCeEEEEeEEeeeEEEEeCCCceEEEEEe-cCcCCHHHHHH-----------
Confidence            367888999999999999999999999999999999999999999555 45554321 12345666766           


Q ss_pred             cCCccchHHHHHHHHHHHcC-CCCc
Q psy16142        397 VKFSEESNDVKTLAAKAKEG-KLQP  420 (426)
Q Consensus       397 ~~~~~~~~~~~~l~~~a~~~-~l~~  420 (426)
                              ......+++++. .|-+
T Consensus       119 --------~~~~~~~~~~~~~~~~~  135 (219)
T PRK13757        119 --------IYSQDVACYGENLAYFP  135 (219)
T ss_pred             --------HHHHHHHHHhcCccccC
Confidence                    666667777765 3433

>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters)

Probab=87.33  E-value=0.81  Score=44.05  Aligned_cols=36  Identities=17%  Similarity=0.248  Sum_probs=31.8

Q ss_pred             cceeecCCCeEEEEEeecCCCccccCCcEEEEEEcCC
Q psy16142        125 TMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENE  161 (426)
Q Consensus       125 ~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~  161 (426)
                      .+.|.||++|+|..+.+.+|+ .|..|++|+.|.+..
T Consensus        88 ~~~i~AP~dG~V~~~~~~~G~-~v~~g~~l~~i~~~~  123 (265)
T TIGR00999        88 YVEVRSPFDGYITQKSVTLGD-YVAPQAELFRVADLG  123 (265)
T ss_pred             eEEEECCCCeEEEEEEcCCCC-EeCCCCceEEEEcCC
Confidence            346899999999999999999 899999999987643

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=87.30  E-value=0.57  Score=48.18  Aligned_cols=43  Identities=19%  Similarity=0.301  Sum_probs=36.4

Q ss_pred             hhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEcCC
Q psy16142        118 EIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENE  161 (426)
Q Consensus       118 ~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~  161 (426)
                      .|........|.++.+|+|.+++|++|+ .|+.|++|+.++...
T Consensus        36 ~v~~~~~~~~v~~~~~G~v~~i~V~eG~-~V~kG~~L~~ld~~~   78 (423)
T TIGR01843        36 KVVPSGNVKVVQHLEGGIVREILVREGD-RVKAGQVLVELDATD   78 (423)
T ss_pred             EEEECCCeeecccCCCcEEEEEEeCCCC-EecCCCeEEEEccch
Confidence            3445666667899999999999999999 899999999997643

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein

Probab=87.01  E-value=0.67  Score=48.37  Aligned_cols=36  Identities=22%  Similarity=0.402  Sum_probs=32.6

Q ss_pred             cceeecCCCeEEEEEeecCCCccccCCcEEEEEEcCC
Q psy16142        125 TMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENE  161 (426)
Q Consensus       125 ~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~  161 (426)
                      ...|.++.+|+|.+++|++|+ .|+.|++|+.|+...
T Consensus        58 ~~~v~a~~~G~V~~i~V~eG~-~V~kGq~L~~l~~~~   93 (421)
T TIGR03794        58 VDTIQSPGSGVVIDLDVEVGD-QVKKGQVVARLFQPE   93 (421)
T ss_pred             eeEEECCCCeEEEEEECCCcC-EECCCCEEEEECcHH
Confidence            458999999999999999999 899999999997643

Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein

Probab=86.99  E-value=0.61  Score=49.31  Aligned_cols=36  Identities=8%  Similarity=0.123  Sum_probs=32.3

Q ss_pred             cceeecCCCeEEEEEeecCCCccccCCcEEEEEEcCC
Q psy16142        125 TMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENE  161 (426)
Q Consensus       125 ~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~  161 (426)
                      ...|.++..|+|.+|+|++|+ .|+.|++|+.|....
T Consensus        59 ~~~vq~~~~G~v~~i~V~eG~-~V~~G~~L~~ld~~~   94 (457)
T TIGR01000        59 LSKIQSTSNNAIKENYLKENK-FVKKGDLLVVYDNGN   94 (457)
T ss_pred             eEEEEcCCCcEEEEEEcCCCC-EecCCCEEEEECchH
Confidence            457999999999999999999 899999999997643

This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.

>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C

Probab=86.78  E-value=0.64  Score=45.99  Aligned_cols=35  Identities=17%  Similarity=0.352  Sum_probs=25.1

Q ss_pred             ccceeecCCCeEEEEEeecCCCccccCCcEEEEEEcC
Q psy16142        124 ATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVEN  160 (426)
Q Consensus       124 ~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~  160 (426)
                      -+..|.++.+|+| ++++++|+ .|+.|++|+.|...
T Consensus        20 ~~~~v~~~~~G~v-~~~v~~G~-~V~kG~~L~~ld~~   54 (328)
T PF12700_consen   20 NEVSVSAPVSGRV-SVNVKEGD-KVKKGQVLAELDSS   54 (328)
T ss_dssp             SEEEE--SS-EEE-EE-S-TTS-EEETT-EEEEEE-H
T ss_pred             EEEEEECCCCEEE-EEEeCCcC-EECCCCEEEEEECh
Confidence            3567999999999 99999999 89999999999854

...

>PRK11578 macrolide transporter subunit MacA; Provisional

Probab=86.68  E-value=0.73  Score=47.18  Aligned_cols=40  Identities=18%  Similarity=0.297  Sum_probs=34.3

Q ss_pred             hhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEc
Q psy16142        118 EIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVE  159 (426)
Q Consensus       118 ~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~  159 (426)
                      .|+... ...|.|+.+|.|.++++++|+ .|+.|++|+.|+.
T Consensus        55 ~v~~~~-~~~l~a~~~G~V~~v~v~~G~-~V~kG~~L~~ld~   94 (370)
T PRK11578         55 KLDALR-KVDVGAQVSGQLKTLSVAIGD-KVKKDQLLGVIDP   94 (370)
T ss_pred             EEEeee-EEEEecccceEEEEEEcCCCC-EEcCCCEEEEECc
Confidence            344444 568999999999999999999 8999999999965

>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein

Probab=86.17  E-value=0.97  Score=41.03  Aligned_cols=35  Identities=26%  Similarity=0.450  Sum_probs=31.0

Q ss_pred             ceeecCCCeEEEE-------EeecCCCccccCCcEEEEEEcCC
Q psy16142        126 MGFETPEEGYLAK-------ILVPAGSKDVPIGKLVCIIVENE  161 (426)
Q Consensus       126 ~ei~a~~~G~v~~-------i~v~~G~~~v~vG~~l~~i~~~~  161 (426)
                      ..|.||..|++..       +++++|+ .|..|++||.++...
T Consensus        81 ~~v~sp~~G~~~~~~~P~~~~~v~~Gd-~V~~Gq~l~iiEamK  122 (156)
T TIGR00531        81 HFVRSPMVGTFYRAPSPDAKPFVEVGD-KVKKGQIVCIVEAMK  122 (156)
T ss_pred             CEEeCCCCEEEEecCCCCCCccccCCC-EeCCCCEEEEEEecc
Confidence            5699999999976       5899999 899999999998653

The gene name is accB or fabE.

>PRK09859 multidrug efflux system protein MdtE; Provisional

Probab=86.15  E-value=0.85  Score=47.03  Aligned_cols=44  Identities=16%  Similarity=0.092  Sum_probs=36.9

Q ss_pred             chhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEcC
Q psy16142        115 LLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVEN  160 (426)
Q Consensus       115 ~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~  160 (426)
                      ....|+... ..+|.++.+|+|.++.+++|+ .|+.|++|+.|+..
T Consensus        52 ~~G~v~~~~-~~~l~~~v~G~V~~i~v~~G~-~VkkGqvLa~ld~~   95 (385)
T PRK09859         52 LPGRTVPYE-VAEIRPQVGGIIIKRNFIEGD-KVNQGDSLYQIDPA   95 (385)
T ss_pred             EEEEEEEEE-EEEEeccCcEEEEEEEcCCcC-EecCCCEEEEECcH
Confidence            344555554 677999999999999999999 89999999999754

>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase

Probab=86.04  E-value=0.97  Score=44.41  Aligned_cols=37  Identities=27%  Similarity=0.469  Sum_probs=32.1

Q ss_pred             cceeecCCCeEEEE-------EeecCCCccccCCcEEEEEEcCCc
Q psy16142        125 TMGFETPEEGYLAK-------ILVPAGSKDVPIGKLVCIIVENES  162 (426)
Q Consensus       125 ~~ei~a~~~G~v~~-------i~v~~G~~~v~vG~~l~~i~~~~~  162 (426)
                      ...|.||..|++.+       +++++|| .|+.|++|+.|+...-
T Consensus       197 ~~~V~APmaGtf~r~p~pge~w~VkvGD-sVkkGQvLavIEAMKm  240 (274)
T PLN02983        197 HPPLKSPMAGTFYRSPAPGEPPFVKVGD-KVQKGQVVCIIEAMKL  240 (274)
T ss_pred             CCeEeCCcCeEEEeccCCCCcceeCCCC-EecCCCEEEEEEeece
Confidence            34589999999999       5999999 8999999999987543

>PRK11556 multidrug efflux system subunit MdtA; Provisional

Probab=86.00  E-value=0.86  Score=47.68  Aligned_cols=44  Identities=20%  Similarity=0.288  Sum_probs=37.2

Q ss_pred             chhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEcC
Q psy16142        115 LLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVEN  160 (426)
Q Consensus       115 ~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~  160 (426)
                      ....|+.. -.+.|.++.+|+|.++++++|+ .|+.|++|+.|...
T Consensus        78 ~~Gtv~a~-~~v~v~~~vsG~V~~i~v~eG~-~VkkGq~La~ld~~  121 (415)
T PRK11556         78 GLGTVTAA-NTVTVRSRVDGQLMALHFQEGQ-QVKAGDLLAEIDPR  121 (415)
T ss_pred             EEEEEEee-eEEEEEccccEEEEEEECCCCC-EecCCCEEEEECcH
Confidence            34556664 3678999999999999999999 89999999999764

>PRK15030 multidrug efflux system transporter AcrA; Provisional

Probab=85.94  E-value=0.85  Score=47.30  Aligned_cols=41  Identities=17%  Similarity=0.162  Sum_probs=35.5

Q ss_pred             hhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEcC
Q psy16142        118 EIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVEN  160 (426)
Q Consensus       118 ~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~  160 (426)
                      .|+... ..+|.++.+|+|.++.+++|+ .|+.|++|+.|+..
T Consensus        59 ~v~a~~-~~~l~a~vsG~V~~v~v~~Gd-~VkkGqvLa~ld~~   99 (397)
T PRK15030         59 RTSAYR-IAEVRPQVSGIILKRNFKEGS-DIEAGVSLYQIDPA   99 (397)
T ss_pred             EEEEEE-EEEEEecCcEEEEEEEcCCCC-EecCCCEEEEECCH
Confidence            455544 778999999999999999999 89999999999754

>PRK14042 pyruvate carboxylase subunit B; Provisional

Probab=85.85  E-value=1  Score=49.44  Aligned_cols=35  Identities=26%  Similarity=0.325  Sum_probs=32.3

Q ss_pred             ceeecCCCeEEEEEeecCCCccccCCcEEEEEEcCC
Q psy16142        126 MGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENE  161 (426)
Q Consensus       126 ~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~  161 (426)
                      .+|.||..|+|.++++++|+ .|+.|++|+.++...
T Consensus       526 ~~v~apm~G~V~~~~V~~Gd-~V~~Gq~L~~iEamK  560 (596)
T PRK14042        526 GDITVAIPGSIIAIHVSAGD-EVKAGQAVLVIEAMK  560 (596)
T ss_pred             CeEecCcceEEEEEEeCCCC-EeCCCCEEEEEEecc
Confidence            36999999999999999999 899999999998754

>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed

Probab=85.73  E-value=0.75  Score=47.38  Aligned_cols=42  Identities=12%  Similarity=0.189  Sum_probs=35.7

Q ss_pred             hhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEcC
Q psy16142        117 AEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVEN  160 (426)
Q Consensus       117 ~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~  160 (426)
                      ..|+.+. ..+|.++.+|+|.++++++|+ .|+.|++|+.|+..
T Consensus        56 G~v~~~~-~~~l~~~v~G~V~~v~v~~Gd-~VkkGq~La~ld~~   97 (385)
T PRK09578         56 GRLDAYR-QAEVRARVAGIVTARTYEEGQ-EVKQGAVLFRIDPA   97 (385)
T ss_pred             EEEEEee-EEEEeccCcEEEEEEECCCCC-EEcCCCEEEEECCH
Confidence            3455544 668999999999999999999 89999999999654

>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases

Probab=85.71  E-value=0.69  Score=45.95  Aligned_cols=31  Identities=26%  Similarity=0.368  Sum_probs=21.3

Q ss_pred             cceeecCCCeEEEEEeecCCCccccCCcEEEEE
Q psy16142        125 TMGFETPEEGYLAKILVPAGSKDVPIGKLVCII  157 (426)
Q Consensus       125 ~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i  157 (426)
                      ..-+.||..|.+ ...++.|+ .|+.|++|+++
T Consensus       223 ~~~v~Ap~~G~~-~~~~~~G~-~V~~G~~lg~i  253 (288)
T cd06254         223 VYYVTSPASGLW-YPFVKAGD-TVQKGALLGYV  253 (288)
T ss_pred             CEEEecCCCeEE-EEecCCCC-EecCCCEEEEE
Confidence            445677777777 56667777 67777777777

ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.

>TIGR01235 pyruv_carbox pyruvate carboxylase

Probab=85.21  E-value=1.5  Score=51.74  Aligned_cols=62  Identities=11%  Similarity=0.169  Sum_probs=44.0

Q ss_pred             eeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEcCC
Q psy16142         98 TIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENE  161 (426)
Q Consensus        98 ~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~  161 (426)
                      ......++.++.+..++.....+.. -...|.||..|+|.++++++|+ .|+.|++|++++...
T Consensus      1048 q~reV~V~D~s~~~~~~~~~KAd~~-~~~~I~a~~~G~v~~~~v~~Gd-~V~~Gd~L~~iEamK 1109 (1143)
T TIGR01235      1048 QPRRIKVPDRSHKAEAAVRRKADPG-NPAHVGAPMPGVIIEVKVSSGQ-AVNKGDPLVVLEAMK 1109 (1143)
T ss_pred             eEEEEEecCcccccccccccccccc-cCceeecCCCcEEEEEEeCCCC-EeCCCCEEEEEEecc
Confidence            3344445555555544444333222 2456999999999999999999 799999999998754

This enzyme plays a role in gluconeogensis but not glycolysis.

>PF05896 NQRA: Na(+)-translocating NADH-quinone reductase subunit A (NQRA); InterPro: IPR008703 This family consists of several bacterial Na+-translocating NADH-quinone reductase subunit A (NQRA) proteins

Probab=84.62  E-value=0.83  Score=44.78  Aligned_cols=41  Identities=29%  Similarity=0.399  Sum_probs=34.5

Q ss_pred             eecccccCCccccCcchhhhhcccc--cceeecCCCeEEEEEeecC
Q psy16142        100 VSWAKKEGDKLNEGDLLAEIETDKA--TMGFETPEEGYLAKILVPA  143 (426)
Q Consensus       100 ~~w~v~vGd~Ve~gd~L~~vetdK~--~~ei~a~~~G~v~~i~v~~  143 (426)
                      -+.++++||.|+.||+|+   .||-  .+-+.||.+|+|.+|...+
T Consensus        41 Pkm~VkeGD~Vk~Gq~LF---~dK~~p~v~ftsPvsG~V~~I~RG~   83 (257)
T PF05896_consen   41 PKMLVKEGDRVKAGQPLF---EDKKNPGVKFTSPVSGTVKAINRGE   83 (257)
T ss_pred             ccEEeccCCEEeCCCeeE---eeCCCCCcEEecCCCeEEEEEecCC
Confidence            588899999999999999   4655  4568999999999988633

The Na+-translocating NADH: ubiquinone oxidoreductase (Na+-NQR) generates an electrochemical Na+ potential driven by aerobic respiration [].; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0006814 sodium ion transport, 0055114 oxidation-reduction process

>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit

Probab=83.44  E-value=1.5  Score=48.01  Aligned_cols=37  Identities=22%  Similarity=0.344  Sum_probs=33.2

Q ss_pred             cceeecCCCeEEEEEeecCCCccccCCcEEEEEEcCCc
Q psy16142        125 TMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENES  162 (426)
Q Consensus       125 ~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~~  162 (426)
                      ...|.||..|+|.++++++|+ .|+.|++|+.++...-
T Consensus       517 ~~~v~ap~~G~v~~~~V~~Gd-~V~~G~~l~~iEamKm  553 (582)
T TIGR01108       517 GTPVTAPIAGSIVKVKVSEGQ-TVAEGEVLLILEAMKM  553 (582)
T ss_pred             CCeEeCCccEEEEEEEeCCCC-EECCCCEEEEEEeccc
Confidence            347999999999999999999 7999999999987543

This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.

>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=83.43  E-value=1.5  Score=39.65  Aligned_cols=35  Identities=26%  Similarity=0.407  Sum_probs=31.1

Q ss_pred             ceeecCCCeEEEE-------EeecCCCccccCCcEEEEEEcCC
Q psy16142        126 MGFETPEEGYLAK-------ILVPAGSKDVPIGKLVCIIVENE  161 (426)
Q Consensus       126 ~ei~a~~~G~v~~-------i~v~~G~~~v~vG~~l~~i~~~~  161 (426)
                      ..|.||.-|++..       .+++.|+ .|..|++||.++...
T Consensus        80 ~~v~sp~~G~~~~~~sP~~~~~v~~Gd-~V~~Gq~l~~iEamK  121 (155)
T PRK06302         80 HVVTSPMVGTFYRAPSPDAPPFVEVGD-TVKEGQTLCIIEAMK  121 (155)
T ss_pred             CEEeCCcCEEEEecCCCCCCcccCCCC-EeCCCCEEEEEEecc
Confidence            5799999999976       6899999 899999999998753

>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional

Probab=83.38  E-value=1.3  Score=46.24  Aligned_cols=44  Identities=14%  Similarity=0.214  Sum_probs=35.8

Q ss_pred             hhhhhcc-cccceeecCCCeEEEEEe-ecCCCccccCCcEEEEEEcC
Q psy16142        116 LAEIETD-KATMGFETPEEGYLAKIL-VPAGSKDVPIGKLVCIIVEN  160 (426)
Q Consensus       116 L~~vetd-K~~~ei~a~~~G~v~~i~-v~~G~~~v~vG~~l~~i~~~  160 (426)
                      ...|+.| .-...|.++.+|.|.+++ +.+|+ .|+.|++|+.|...
T Consensus       113 ~G~v~~~~~~~~~v~arv~G~V~~l~~~~~Gd-~VkkGq~La~l~sp  158 (409)
T PRK09783        113 PANVSYNEYQYAIVQARAAGFIDKVYPLTVGD-KVQKGTPLLDLTIP  158 (409)
T ss_pred             eEEEEECCCceEEEeCCcCEEEEEEEecCCCC-EECCCCEEEEEeCH
Confidence            3445543 235679999999999998 99999 89999999999754

>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]

Probab=81.82  E-value=1.6  Score=47.03  Aligned_cols=34  Identities=21%  Similarity=0.386  Sum_probs=31.2

Q ss_pred             ceeecCCCeEEEEEeecCCCccccCCcEEEEEEcC
Q psy16142        126 MGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVEN  160 (426)
Q Consensus       126 ~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~  160 (426)
                      -.+.||..|+|..+.|++|+ .|..|++|++++.-
T Consensus       576 ~~l~aPMpG~v~~v~V~~G~-~V~~G~~lvvlEAM  609 (645)
T COG4770         576 GELLAPMPGTVVSVAVKEGQ-EVSAGDLLVVLEAM  609 (645)
T ss_pred             CceecCCCceEEEEEecCCC-EecCCCeEEEeEeh
Confidence            35999999999999999999 89999999999864

>PRK14040 oxaloacetate decarboxylase; Provisional

Probab=81.77  E-value=1.9  Score=47.38  Aligned_cols=36  Identities=22%  Similarity=0.371  Sum_probs=32.6

Q ss_pred             cceeecCCCeEEEEEeecCCCccccCCcEEEEEEcCC
Q psy16142        125 TMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENE  161 (426)
Q Consensus       125 ~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~  161 (426)
                      ...|.||..|+|.++++++|+ .|..|++|+.++...
T Consensus       524 ~~~V~Ap~~G~I~~~~V~~Gd-~V~~Gd~l~~iEamK  559 (593)
T PRK14040        524 GEPVTAPLAGNIFKVIVTEGQ-TVAEGDVLLILEAMK  559 (593)
T ss_pred             CceEECCccEEEEEEEeCCCC-EeCCCCEEEEEecCc
Confidence            457999999999999999999 899999999997654

>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein

Probab=80.84  E-value=2  Score=44.88  Aligned_cols=33  Identities=12%  Similarity=0.149  Sum_probs=30.7

Q ss_pred             ceeecCCCeEEEEEeecCCCccccCCcEEEEEEc
Q psy16142        126 MGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVE  159 (426)
Q Consensus       126 ~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~  159 (426)
                      ..|.||++|+|..+.+.+|+ .|..|++|+.|..
T Consensus       254 ~~i~AP~dG~V~~~~~~~G~-~v~~g~~l~~i~~  286 (421)
T TIGR03794       254 TRIVSQHSGRVIELNYTPGQ-LVAAGAPLASLEV  286 (421)
T ss_pred             CeEEcCCCeEEEEeeCCCCC-EecCCCcEEEEEc
Confidence            57999999999999999999 8999999999954

Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=80.51  E-value=2.1  Score=43.94  Aligned_cols=36  Identities=22%  Similarity=0.345  Sum_probs=31.5

Q ss_pred             ccceeecCCCeEEEEEee-cCCCccccCCcEEEEEEcC
Q psy16142        124 ATMGFETPEEGYLAKILV-PAGSKDVPIGKLVCIIVEN  160 (426)
Q Consensus       124 ~~~ei~a~~~G~v~~i~v-~~G~~~v~vG~~l~~i~~~  160 (426)
                      -...|.||++|+|..+.+ ..|+ .|..|++|+.|.+.
T Consensus       270 ~~~~i~AP~dG~V~~~~~~~~G~-~v~~g~~l~~i~~~  306 (423)
T TIGR01843       270 QRLIIRSPVDGTVQSLKVHTVGG-VVQPGETLMEIVPE  306 (423)
T ss_pred             hhcEEECCCCcEEEEEEEEccCc-eecCCCeeEEEecC
Confidence            456799999999999876 7999 89999999999764

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]

Probab=80.40  E-value=1.8  Score=44.43  Aligned_cols=37  Identities=24%  Similarity=0.418  Sum_probs=32.8

Q ss_pred             cceeecCCCeEEEEEeecCCCccccCCcEEEEEEcCCc
Q psy16142        125 TMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENES  162 (426)
Q Consensus       125 ~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~~  162 (426)
                      ...|.||.+|+|.+..++.|+ .|.+|++|+.+.+.+.
T Consensus       208 ~T~IrAP~dG~V~~~~v~~G~-~V~~G~~l~alVp~~~  244 (352)
T COG1566         208 RTVIRAPVDGYVTNLSVRVGQ-YVSAGTPLMALVPLDS  244 (352)
T ss_pred             CCEEECCCCceEEeecccCCC-eecCCCceEEEecccc
Confidence            456999999999999999999 8999999999977543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	426
3b8k_A	239	Structure Of The Truncated Human Dihydrolipoyl Acet		1e-37
1y8n_B	128	Crystal Structure Of The Pdk3-L2 Complex Length = 1		1e-28
1fyc_A	106	Inner Lipoyl Domain From Human Pyruvate Dehydrogena		2e-28
3crk_C	87	Crystal Structure Of The Pdhk2-L2 Complex. Length =		2e-27
2dne_A	108	Solution Structure Of Rsgi Ruh-058, A Lipoyl Domain		5e-26
2dnc_A	98	Solution Structure Of Rsgi Ruh-054, A Lipoyl Domain		9e-17
1zy8_L	229	The Crystal Structure Of Dihydrolipoamide Dehydroge		3e-16
1c4t_A	233	Catalytic Domain From Trimeric Dihydrolipoamide Suc		1e-12
3duf_I	428	Snapshots Of Catalysis In The E1 Subunit Of The Pyr		2e-11
1b5s_A	242	Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalyt		8e-10
3mae_A	256	Crystal Structure Of Probable Dihydrolipamide Acety		2e-09
1lab_A	80	Three-Dimensional Structure Of The Lipoyl Domain Fr		7e-07
2ihw_A	262	Crystal Structure Of A Cubic Core Of The Dihydrolip		1e-04
2l5t_A	77	Solution Nmr Structure Of E2 Lipoyl Domain From The		2e-04
3l60_A	250	Crystal Structure Of Branched-Chain Alpha-Keto Acid		3e-04
3rqc_A	224	Crystal Structure Of The Catalytic Core Of The 2-Ox		6e-04

>pdb|3B8K|A Chain A, Structure Of The Truncated Human Dihydrolipoyl Acetyltransferase (E2) Length = 239

Iteration: 1
 Score =  154 bits (389), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 85/166 (51%), Positives = 107/166 (64%), Gaps = 35/166 (21%)
Query: 274 PTANGPFTDLPVSGVRGVIAKRLLQSKQ---------------VIKLREQMNKALEKRGA 318
           P   G FTD+P+S +R VIA+RL+QSKQ               V+ +R+++NK LE R +
Sbjct: 6   PVPTGVFTDIPISNIRRVIAQRLMQSKQTIPHYYLSIDVNMGEVLLVRKELNKILEGR-S 64
Query: 319 KLSINDFIIKATALASRRVPEANSSWQDTFIREYHSVDVSVAVNTDKGLFTPIVFDADKK 378
           K+S+NDFIIKA+ALA  +VPEANSSW DT IR+ H VDVSVAV+T  GL TPIVF+A  K
Sbjct: 65  KISVNDFIIKASALACLKVPEANSSWMDTVIRQNHVVDVSVAVSTPAGLITPIVFNAHIK 124
Query: 379 GLVDISNDSRSLISFRRPVKFSEESNDVKTLAAKAKEGKLQPHEFQ 424
           G+  I                   +NDV +LA KA+EGKLQPHEFQ
Sbjct: 125 GVETI-------------------ANDVVSLATKAREGKLQPHEFQ 151

>pdb|1Y8N|B Chain B, Crystal Structure Of The Pdk3-L2 Complex Length = 128

Iteration: 1
 Score =  124 bits (310), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 58/81 (71%), Positives = 69/81 (85%)
Query: 84  RVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPA 143
           +V LPALSPTM MGT+  W KK G+KL+EGDLLAEIETDKAT+GFE  EEGYLAKILVP 
Sbjct: 29  QVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPE 88
Query: 144 GSKDVPIGKLVCIIVENESDV 164
           G++DVP+G  +CIIVE E+D+
Sbjct: 89  GTRDVPLGTPLCIIVEKEADI 109

>pdb|1FYC|A Chain A, Inner Lipoyl Domain From Human Pyruvate Dehydrogenase (Pdh) Complex, Nmr, 1 Structure Length = 106

Iteration: 1
 Score =  123 bits (309), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 58/81 (71%), Positives = 69/81 (85%)
Query: 84  RVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPA 143
           +V LPALSPTM MGT+  W KK G+KL+EGDLLAEIETDKAT+GFE  EEGYLAKILVP 
Sbjct: 11  QVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPE 70
Query: 144 GSKDVPIGKLVCIIVENESDV 164
           G++DVP+G  +CIIVE E+D+
Sbjct: 71  GTRDVPLGTPLCIIVEKEADI 91

>pdb|3CRK|C Chain C, Crystal Structure Of The Pdhk2-L2 Complex. Length = 87

Iteration: 1
 Score =  119 bits (299), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 57/81 (70%), Positives = 68/81 (83%)
Query: 84  RVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPA 143
           +V LPALSPTM MGT+  W KK G+KL+EGDLLAEIETD AT+GFE  EEGYLAKILVP 
Sbjct: 7   QVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKILVPE 66
Query: 144 GSKDVPIGKLVCIIVENESDV 164
           G++DVP+G  +CIIVE E+D+
Sbjct: 67  GTRDVPLGTPLCIIVEKEADI 87

>pdb|2DNE|A Chain A, Solution Structure Of Rsgi Ruh-058, A Lipoyl Domain Of Human 2-Oxoacid Dehydrogenase Length = 108

Iteration: 1
 Score =  115 bits (288), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 52/81 (64%), Positives = 66/81 (81%)
Query: 84  RVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPA 143
           +V LP+LSPTM+ GTI  W KKEGDK+NEGDL+AE+ETDKAT+GFE+ EE Y+AKILV  
Sbjct: 9   KVPLPSLSPTMQAGTIARWEKKEGDKINEGDLIAEVETDKATVGFESLEECYMAKILVAE 68
Query: 144 GSKDVPIGKLVCIIVENESDV 164
           G++DVPIG ++CI V    D+
Sbjct: 69  GTRDVPIGAIICITVGKPEDI 89

>pdb|2DNC|A Chain A, Solution Structure Of Rsgi Ruh-054, A Lipoyl Domain From Human 2-Oxoacid Dehydrogenase Length = 98

Iteration: 1
 Score = 84.7 bits (208), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 40/80 (50%), Positives = 57/80 (71%)
Query: 84  RVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPA 143
           ++ +P+LSPTME G IV W KKEG+ ++ GD L EIETDKA +  +  ++G LAKI+V  
Sbjct: 9   KILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEE 68
Query: 144 GSKDVPIGKLVCIIVENESD 163
           GSK++ +G L+ +IVE   D
Sbjct: 69  GSKNIRLGSLIGLIVEEGED 88

>pdb|1C4T|A Chain A, Catalytic Domain From Trimeric Dihydrolipoamide Succinyltransferase Length = 233

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 75/152 (49%), Gaps = 35/152 (23%)
Query: 283 LPVSGVRGVIAKRLLQSKQ---------------VIKLREQMNKALEKR-GAKLSINDFI 326
           +P++ +R  +A+RLL++K                ++ LR+Q  +A EKR G +L    F 
Sbjct: 7   VPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYGEAFEKRHGIRLGFMSFY 66
Query: 327 IKATALASRRVPEANSSWQDTFIREYHSVDVSVAVNTDKGLFTPIVFDADKKGLVDISND 386
           +KA   A +R PE N+S     +  ++  DVS+AV+T +GL TP++ D D  G+ DI   
Sbjct: 67  VKAVVEALKRYPEVNASIDGDDVVYHNYFDVSMAVSTPRGLVTPVLRDVDTLGMADI--- 123
Query: 387 SRSLISFRRPVKFSEESNDVKTLAAKAKEGKL 418
                              +K LA K ++GKL
Sbjct: 124 ----------------EKKIKELAVKGRDGKL 139

>pdb|3DUF|I Chain I, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate Dehydrogenase Multi-Enzyme Complex Length = 428

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 64/233 (27%), Positives = 105/233 (45%), Gaps = 48/233 (20%)
Query: 220 RVYASPLAKRLAAEKGLDLSSIGAGSGLFGSITSADLS---------KASKAGAVAAPSK 270
           RV A P  ++ A EKG+D+  +  G+G  G +   D+            + A   AAP+ 
Sbjct: 128 RVIAMPSVRKYAREKGVDIRLV-QGTGKNGRVLKEDIDAFLAGGAKPAPAAAEEKAAPAA 186
Query: 271 SAKPTANGPF--TDLPVSGVRGVIAKRLLQSKQ------------VIKL---REQMNKAL 313
           +   T  G F  T   +SG+R  IAK ++ SK             V KL   R++     
Sbjct: 187 AKPATTEGEFPETREKMSGIRRAIAKAMVHSKHTAPHVTLMDEADVTKLVAHRKKFKAIA 246
Query: 314 EKRGAKLSINDFIIKATALASRRVPEANSSWQDTF--IREYHSVDVSVAVNTDKGLFTPI 371
            ++G KL+   +++KA   A R  P  N+S  D    I + H  ++ +A +TD+GL  P+
Sbjct: 247 AEKGIKLTFLPYVVKALVSALREYPVLNTSIDDETEEIIQKHYYNIGIAADTDRGLLVPV 306
Query: 372 VFDADKKGLVDISNDSRSLISFRRPVKFSEESNDVKTLAAKAKEGKLQPHEFQ 424
           +  AD+K +  +                   + ++  LA KA++GKL P E +
Sbjct: 307 IKHADRKPIFAL-------------------AQEINELAEKARDGKLTPGEMK 340

>pdb|1B5S|A Chain A, Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalytic Domain (Residues 184-425) From Bacillus Stearothermophilus Length = 242

Iteration: 1
 Score = 61.6 bits (148), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 81/174 (46%), Gaps = 39/174 (22%)
Query: 271 SAKP-TANGPF--TDLPVSGVRGVIAKRLLQSKQ------------VIKL---REQMNKA 312
           +AKP T  G F  T   +SG+R  IAK ++ SK             V KL   R++    
Sbjct: 2   AAKPATTEGEFPETREKMSGIRRAIAKAMVHSKHTAPHVTLMDEADVTKLVAHRKKFKAI 61
Query: 313 LEKRGAKLSINDFIIKATALASRRVPEANSSWQDTF--IREYHSVDVSVAVNTDKGLFTP 370
             ++G KL+   +++KA   A R  P  N+S  D    I + H  ++ +A +TD+GL  P
Sbjct: 62  AAEKGIKLTFLPYVVKALVSALREYPVLNTSIDDETEEIIQKHYYNIGIAADTDRGLLVP 121
Query: 371 IVFDADKKGLVDISNDSRSLISFRRPVKFSEESNDVKTLAAKAKEGKLQPHEFQ 424
           ++  AD+K +  +                   + ++  LA KA++GKL P E +
Sbjct: 122 VIKHADRKPIFAL-------------------AQEINELAEKARDGKLTPGEMK 156

>pdb|3MAE|A Chain A, Crystal Structure Of Probable Dihydrolipamide Acetyltransferase From Listeria Monocytogenes 4b F2365 Length = 256

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 69/136 (50%), Gaps = 16/136 (11%)
Query: 282 DLPVSGVRGVIAKRLLQSKQ---------------VIKLREQMNKALEKR-GAKLSINDF 325
           ++P++GVR  IAK +  SKQ               +++ R  +  + +K  G  L+   F
Sbjct: 20  EIPINGVRKAIAKHMSVSKQEIPHAWMMVEVDATGLVRYRNAVKDSFKKEEGYSLTYFAF 79
Query: 326 IIKATALASRRVPEANSSWQDTFIREYHSVDVSVAVNTDKGLFTPIVFDADKKGLVDISN 385
            IKA A A +  P+ NS+W    I E+ ++++S+A+     L+ P++ +AD+K +  I+ 
Sbjct: 80  FIKAVAQALKEFPQLNSTWAGDKIIEHANINISIAIAAGDLLYVPVIKNADEKSIKGIAR 139
Query: 386 DSRSLISFRRPVKFSE 401
           +   L    R  K S+
Sbjct: 140 EISELAGKARNGKLSQ 155

>pdb|1LAB|A Chain A, Three-Dimensional Structure Of The Lipoyl Domain From Bacillus Stearothermophilus Pyruvate Dehydrogenase Multienzyme Complex Length = 80

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 37/59 (62%)
Query: 87  LPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGS 145
           LP +   +  G IV W  K GD++NE D+L E++ DKA +   +P +G + +ILVP G+
Sbjct: 6   LPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGT 64

>pdb|2IHW|A Chain A, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide Acyltransferase (E2b) Component In The Branched-Chain Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form Length = 262

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 49/92 (53%), Gaps = 2/92 (2%)
Query: 301 QVIKLREQMNKALEKRGAKLSINDFIIKATALASRRVPEANSSWQDTF--IREYHSVDVS 358
           +++KLRE++      RG KLS   F +KA +L   + P  N+S  +    I    S ++ 
Sbjct: 66  ELVKLREELKPIAFARGIKLSFMPFFLKAASLGLLQFPILNASVDENCQNITYKASHNIG 125
Query: 359 VAVNTDKGLFTPIVFDADKKGLVDISNDSRSL 390
           +A++T++GL  P V +   + + +I+ +   L
Sbjct: 126 IAMDTEQGLIVPNVKNVQIRSIFEIATELNRL 157

>pdb|2L5T|A Chain A, Solution Nmr Structure Of E2 Lipoyl Domain From Thermoplasma Acidophilum Length = 77

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 87  LPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSK 146
           LP +   +  G IV W  KEGD + +   L E+ TDK T+   +P  G + KIL   G +
Sbjct: 6   LPDIGEGVTEGEIVRWDVKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKILYREG-Q 64
Query: 147 DVPIG 151
            VP+G
Sbjct: 65  VVPVG 69

>pdb|3L60|A Chain A, Crystal Structure Of Branched-Chain Alpha-Keto Acid Dehydrogenase Subunit E2 From Mycobacterium Tuberculosis Length = 250

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 33/55 (60%)
Query: 39  KGGTVSISNLGMFGIKNFSAIINPPQACILAVGSLSQRLVREGNDRVALPALSPT 93
           +G T ++SN G  G+ +   +IN P+A IL +G++  R V  G + VA P ++ T
Sbjct: 154 RGSTFTVSNFGALGVDDGVPVINHPEAAILGLGAIKPRPVVVGGEVVARPTMTLT 208

>pdb|3RQC|A Chain A, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid Dehydrogenase Multienzyme Complex From Thermoplasma Acidophilum Length = 224

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 34/157 (21%), Positives = 77/157 (49%), Gaps = 36/157 (22%)
Query: 283 LPVSGVRGVIAKRLLQSKQVI---KLREQMN--------KALEKRGAKLSINDFIIKATA 331
           L + G+R +I  ++ ++KQ++    + E+++         + + R  K+++  F+ +   
Sbjct: 9   LEMHGLRRIIFDKMTKAKQIMPHFTVMEEVDVTSMVSILDSAKARNRKVTVTGFLARIVP 68
Query: 332 LASRRVPEANSSWQDT----FIREYHSVDVSVAVNTDKGLFTPIVFDADKKGLVDISNDS 387
              ++ P  N+ + +T     +++Y+  ++ +AV+T  GL   ++ DAD+K +V+I    
Sbjct: 69  SILKQYPYLNAIYDETRRVYILKKYY--NIGIAVDTPDGLNVFVIKDADRKSMVEI---- 122
Query: 388 RSLISFRRPVKFSEESNDVKTLAAKAKEGKLQPHEFQ 424
                          S ++   A++A+E KLQ  E Q
Sbjct: 123 ---------------SAEISDKASRARENKLQLDEVQ 144

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	426
1zy8_K	229	Pyruvate dehydrogenase protein X component, mitoch	4e-71
3dva_I	428	Dihydrolipoyllysine-residue acetyltransferase comp	1e-70
3dva_I	428	Dihydrolipoyllysine-residue acetyltransferase comp	4e-06
3b8k_A	239	PDCE2;, dihydrolipoyllysine-residue acetyltransfer	2e-56
3b8k_A	239	PDCE2;, dihydrolipoyllysine-residue acetyltransfer	6e-19
1y8o_B	128	Dihydrolipoyllysine-residue acetyltransferase COM	5e-49
2dne_A	108	Dihydrolipoyllysine-residue acetyltransferase comp	5e-49
2dnc_A	98	Pyruvate dehydrogenase protein X component; lipoic	2e-44
3crk_C	87	Dihydrolipoyllysine-residue acetyltransferase COM	1e-38
3l60_A	250	Branched-chain alpha-keto acid dehydrogenase; stru	9e-31
3l60_A	250	Branched-chain alpha-keto acid dehydrogenase; stru	8e-12
3mae_A	256	2-oxoisovalerate dehydrogenase E2 component, dihyd	2e-26
3mae_A	256	2-oxoisovalerate dehydrogenase E2 component, dihyd	6e-06
2ii3_A	262	Lipoamide acyltransferase component of branched-C	7e-26
2ii3_A	262	Lipoamide acyltransferase component of branched-C	3e-08
1dpb_A	243	Dihydrolipoyl-transacetylase; dihydrolipoamide ace	5e-24
1dpb_A	243	Dihydrolipoyl-transacetylase; dihydrolipoamide ace	9e-08
3rqc_A	224	Probable lipoamide acyltransferase; alpha beta fol	6e-23
3rqc_A	224	Probable lipoamide acyltransferase; alpha beta fol	5e-08
1scz_A	233	E2, dihydrolipoamide succinyltransferase; COA-depe	2e-20
1scz_A	233	E2, dihydrolipoamide succinyltransferase; COA-depe	5e-05
2l5t_A	77	Lipoamide acyltransferase; E2 lipoyl domain; NMR {	3e-12
1k8m_A	93	E2 component of branched-chain ahpha-ketoacid dehy	8e-12
1q23_A	219	Chloramphenicol acetyltransferase; CAT I, trimer,	2e-11
1q23_A	219	Chloramphenicol acetyltransferase; CAT I, trimer,	1e-04
3cla_A	213	Type III chloramphenicol acetyltransferase; transf	4e-11
1ghj_A	79	E2, E2, the dihydrolipoamide succinyltransferase c	5e-11
1pmr_A	80	Dihydrolipoyl succinyltransferase; 2-oxoglutarate	8e-11
1w4i_A	62	Pyruvate dehydrogenase E2; transferase, peripheral	4e-10
2coo_A	70	Lipoamide acyltransferase component of branched- c	2e-08
2dn8_A	100	Acetyl-COA carboxylase 2; biotin required enzyme,	2e-08
1w85_I	49	Dihydrolipoyllysine-residue acetyltransferase comp	7e-08
2kcc_A	84	Acetyl-COA carboxylase 2; biotinoyl domain, BCCP,	9e-08
3rnm_E	58	Lipoamide acyltransferase component of branched-C	1e-07
2eq9_C	41	Pyruvate dehydrogenase complex, dihydrolipoamide a	2e-06
1bal_A	51	Dihydrolipoamide succinyltransferase; glycolysis;	7e-06
2k7v_A	85	Dihydrolipoyllysine-residue acetyltransferase comp	1e-05
2eq7_C	40	2-oxoglutarate dehydrogenase E2 component; protein	1e-05
2i9d_A	217	Chloramphenicol acetyltransferase; structural geno	2e-05
1gjx_A	81	Pyruvate dehydrogenase; oxidoreductase, lipoyl dom	3e-05
2eq8_C	40	Pyruvate dehydrogenase complex, dihydrolipoamide a	8e-05
1qjo_A	80	Dihydrolipoamide acetyltransferase; lipoyl domain,	9e-05
1iyu_A	79	E2P, dihydrolipoamide acetyltransferase component	9e-05
2uv8_A	1887	Fatty acid synthase subunit alpha (FAS2); fatty ac	8e-04
2uv8_A	1887	Fatty acid synthase subunit alpha (FAS2); fatty ac	9e-04
2uv9_A	1878	Fatty acid synthase alpha subunits; fungal, dehydr	8e-04
2uv9_A	1878	Fatty acid synthase alpha subunits; fungal, dehydr	8e-04

>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A Length = 428

 Score =  228 bits (583), Expect = 1e-70
 Identities = 87/368 (23%), Positives = 147/368 (39%), Gaps = 60/368 (16%)

Query: 85  VALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAG 144
             LP +   +  G IV W  K GD++NE D+L E++ DKA +   +P +G + +ILVP G
Sbjct: 5   FKLPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEG 64

Query: 145 SKDVPIGKLVCIIVENESDVAAFKDFKDDAPPAAGASAPAPPPPKVAAAPPPPPPKAAPA 204
           +    +G+ +  +           D                   +          K    
Sbjct: 65  TV-ATVGQTLITL-----------DAPGYENMTFKGQEQEEAKKEEKTETVSKEEKVDAV 112

Query: 205 PSPTPVPSQKTSGGTRVYASPLAKRLAAEKGLDLSSIGAGSGLFGSITSADLSKASKAGA 264
               P    +     RV A P  ++ A EKG+D+  +  G+G  G +   D+      GA
Sbjct: 113 APNAPAAEAEAGPNRRVIAMPSVRKYAREKGVDIRLV-QGTGKNGRVLKEDIDAFLAGGA 171

Query: 265 VAAPSKSAKPTANGPF-----------TDLPVSGVRGVIAKRLLQSKQVI---------- 303
             AP+ + +  A               T   +SG+R  IAK ++ SK             
Sbjct: 172 KPAPAAAEEKAAPAAAKPATTEGEFPETREKMSGIRRAIAKAMVHSKHTAPHVTLMDEAD 231

Query: 304 -----KLREQMNKALEKRGAKLSINDFIIKATALASRRVPEANSSWQD--TFIREYHSVD 356
                  R++      ++G KL+   +++KA   A R  P  N+S  D    I + H  +
Sbjct: 232 VTKLVAHRKKFKAIAAEKGIKLTFLPYVVKALVSALREYPVLNTSIDDETEEIIQKHYYN 291

Query: 357 VSVAVNTDKGLFTPIVFDADKKGLVDISNDSRSLISFRRPVKFSEESNDVKTLAAKAKEG 416
           + +A +TD+GL  P++  AD+K +  +                   + ++  LA KA++G
Sbjct: 292 IGIAADTDRGLLVPVIKHADRKPIFAL-------------------AQEINELAEKARDG 332

Query: 417 KLQPHEFQ 424
           KL P E +
Sbjct: 333 KLTPGEMK 340

>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A Length = 428

 Score = 48.0 bits (115), Expect = 4e-06
 Identities = 18/57 (31%), Positives = 34/57 (59%), Gaps = 4/57 (7%)

Query: 39  KGGTVSISNLGMFGIKNFSAIINPPQACILAVGSLSQRLVREGNDRVALP----ALS 91
           KG + +I+N+G  G + F+ +IN P+  IL +G ++++ +    + VA P    +LS
Sbjct: 340 KGASCTITNIGSAGGQWFTPVINHPEVAILGIGRIAEKPIVRDGEIVAAPMLALSLS 396

>3b8k_A PDCE2;, dihydrolipoyllysine-residue acetyltransferase; central beta-sheet surrounded by five alpha-helices; 8.80A {Homo sapiens} Length = 239

 Score =  185 bits (471), Expect = 2e-56
 Identities = 85/173 (49%), Positives = 108/173 (62%), Gaps = 37/173 (21%)

Query: 267 APSKSAKPTANGPFTDLPVSGVRGVIAKRLLQSKQ---------------VIKLREQMNK 311
            P  +  P   G FTD+P+S +R VIA+RL+QSKQ               V+ +R+++NK
Sbjct: 1   GPGMA--PVPTGVFTDIPISNIRRVIAQRLMQSKQTIPHYYLSIDVNMGEVLLVRKELNK 58

Query: 312 ALEKRGAKLSINDFIIKATALASRRVPEANSSWQDTFIREYHSVDVSVAVNTDKGLFTPI 371
            LE   +K+S+NDFIIKA+ALA  +VPEANSSW DT IR+ H VDVSVAV+T  GL TPI
Sbjct: 59  ILEG-RSKISVNDFIIKASALACLKVPEANSSWMDTVIRQNHVVDVSVAVSTPAGLITPI 117

Query: 372 VFDADKKGLVDISNDSRSLISFRRPVKFSEESNDVKTLAAKAKEGKLQPHEFQ 424
           VF+A  KG+  I                   +NDV +LA KA+EGKLQPHEFQ
Sbjct: 118 VFNAHIKGVETI-------------------ANDVVSLATKAREGKLQPHEFQ 151

>3b8k_A PDCE2;, dihydrolipoyllysine-residue acetyltransferase; central beta-sheet surrounded by five alpha-helices; 8.80A {Homo sapiens} Length = 239

 Score = 84.6 bits (210), Expect = 6e-19
 Identities = 31/48 (64%), Positives = 36/48 (75%), Gaps = 1/48 (2%)

Query: 40  GGTVSISNLGMFGIKNFSAIINPPQACILAVGSLSQRLV-REGNDRVA 86
           GGT +ISNLGMFGIKNFSAIINPPQACILA+G+   +LV  +      
Sbjct: 152 GGTFTISNLGMFGIKNFSAIINPPQACILAIGASEDKLVPADNEKGFD 199

>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A Length = 128

 Score =  162 bits (411), Expect = 5e-49
 Identities = 62/99 (62%), Positives = 75/99 (75%)

Query: 85  VALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAG 144
           V LPALSPTM MGT+  W KK G+KL+EGDLLAEIETDKAT+GFE  EEGYLAKILVP G
Sbjct: 30  VLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEG 89

Query: 145 SKDVPIGKLVCIIVENESDVAAFKDFKDDAPPAAGASAP 183
           ++DVP+G  +CIIVE E+D++AF D++           P
Sbjct: 90  TRDVPLGTPLCIIVEKEADISAFADYRPTEVTDLKPQVP 128

>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens} Length = 108

 Score =  161 bits (409), Expect = 5e-49
 Identities = 59/98 (60%), Positives = 77/98 (78%)

Query: 85  VALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAG 144
           V LP+LSPTM+ GTI  W KKEGDK+NEGDL+AE+ETDKAT+GFE+ EE Y+AKILV  G
Sbjct: 10  VPLPSLSPTMQAGTIARWEKKEGDKINEGDLIAEVETDKATVGFESLEECYMAKILVAEG 69

Query: 145 SKDVPIGKLVCIIVENESDVAAFKDFKDDAPPAAGASA 182
           ++DVPIG ++CI V    D+ AFK++  D+  A+G S+
Sbjct: 70  TRDVPIGAIICITVGKPEDIEAFKNYTLDSSAASGPSS 107

>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 98

 Score =  148 bits (377), Expect = 2e-44
 Identities = 40/86 (46%), Positives = 56/86 (65%)

Query: 85  VALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAG 144
           + +P+LSPTME G IV W KKEG+ ++ GD L EIETDKA +  +  ++G LAKI+V  G
Sbjct: 10  ILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEG 69

Query: 145 SKDVPIGKLVCIIVENESDVAAFKDF 170
           SK++ +G L+ +IVE   D       
Sbjct: 70  SKNIRLGSLIGLIVEEGEDWKHVSGP 95

>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C* Length = 87

 Score =  133 bits (336), Expect = 1e-38
 Identities = 57/80 (71%), Positives = 67/80 (83%)

Query: 85  VALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAG 144
           V LPALSPTM MGT+  W KK G+KL+EGDLLAEIETD AT+GFE  EEGYLAKILVP G
Sbjct: 8   VLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKILVPEG 67

Query: 145 SKDVPIGKLVCIIVENESDV 164
           ++DVP+G  +CIIVE E+D+
Sbjct: 68  TRDVPLGTPLCIIVEKEADI 87

>3l60_A Branched-chain alpha-keto acid dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.00A {Mycobacterium tuberculosis} Length = 250

 Score =  117 bits (296), Expect = 9e-31
 Identities = 32/179 (17%), Positives = 67/179 (37%), Gaps = 44/179 (24%)

Query: 265 VAAPSKSAKPTANGPFTDLPVSGVRGVIAKRLLQSKQ---------------VIKLREQM 309
           ++  +  A+          PV GV   +A+++  S +               +++LR++ 
Sbjct: 1   MSLAA--ARGGVGAGPDVRPVHGVHARMAEKMTLSHKEIPTAKASVEVICAELLRLRDRF 58

Query: 310 NKALEKRGAKLSINDFIIKATALASRRVPEANSSWQDTF----IREYHSVDVSVAVNTDK 365
             A      +++     ++   +A +     NS+W D+     +  +  V +     T++
Sbjct: 59  VSA----APEITPFALTLRLLVIALKHNVILNSTWVDSGEGPQVHVHRGVHLGFGAATER 114

Query: 366 GLFTPIVFDADKKGLVDISNDSRSLISFRRPVKFSEESNDVKTLAAKAKEGKLQPHEFQ 424
           GL  P+V DA  K   ++                   ++ V  L   A+EG L P E +
Sbjct: 115 GLLVPVVTDAQDKNTREL-------------------ASRVAELITGAREGTLTPAELR 154

>3l60_A Branched-chain alpha-keto acid dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.00A {Mycobacterium tuberculosis} Length = 250

 Score = 64.2 bits (157), Expect = 8e-12
 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 4/57 (7%)

Query: 39  KGGTVSISNLGMFGIKNFSAIINPPQACILAVGSLSQRLVREGNDRVALP----ALS 91
           +G T ++SN G  G+ +   +IN P+A IL +G++  R V  G + VA P       
Sbjct: 154 RGSTFTVSNFGALGVDDGVPVINHPEAAILGLGAIKPRPVVVGGEVVARPTMTLTCV 210

>3mae_A 2-oxoisovalerate dehydrogenase E2 component, dihydrolipamide acetyltransferase; 2-oxoacid dehydrogenases acyltransferase; 2.50A {Listeria monocytogenes} Length = 256

 Score =  105 bits (265), Expect = 2e-26
 Identities = 43/178 (24%), Positives = 79/178 (44%), Gaps = 37/178 (20%)

Query: 265 VAAPSKSAKPTANGPFTD--LPVSGVRGVIAKRLLQSKQ---------------VIKLRE 307
           ++  +    P       D  +P++GVR  IAK +  SKQ               +++ R 
Sbjct: 1   MSLKAAMPTPPVRSAAGDKEIPINGVRKAIAKHMSVSKQEIPHAWMMVEVDATGLVRYRN 60

Query: 308 QMNKALEKR-GAKLSINDFIIKATALASRRVPEANSSWQDTFIREYHSVDVSVAVNTDKG 366
            +  + +K  G  L+   F IKA A A +  P+ NS+W    I E+ ++++S+A+     
Sbjct: 61  AVKDSFKKEEGYSLTYFAFFIKAVAQALKEFPQLNSTWAGDKIIEHANINISIAIAAGDL 120

Query: 367 LFTPIVFDADKKGLVDISNDSRSLISFRRPVKFSEESNDVKTLAAKAKEGKLQPHEFQ 424
           L+ P++ +AD+K +  I                   + ++  LA KA+ GKL   + +
Sbjct: 121 LYVPVIKNADEKSIKGI-------------------AREISELAGKARNGKLSQADME 159

>3mae_A 2-oxoisovalerate dehydrogenase E2 component, dihydrolipamide acetyltransferase; 2-oxoacid dehydrogenases acyltransferase; 2.50A {Listeria monocytogenes} Length = 256

 Score = 46.5 bits (111), Expect = 6e-06
 Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 1/44 (2%)

Query: 39  KGGTVSISNLGMFGIKNFSAIINPPQACILAVGSLSQR-LVREG 81
           +GGT ++++ G FG      IIN PQA IL V S+ +R ++ + 
Sbjct: 159 EGGTFTVNSTGSFGSVQSMGIINHPQAAILQVESIVKRPVIIDD 202

>2ii3_A Lipoamide acyltransferase component of branched-C alpha-keto acid dehydrogenase complex...; cubic core, HOMO trimer, oxidized COA-bound form; HET: CAO; 2.17A {Bos taurus} PDB: 2ihw_A* 2ii4_A* 2ii5_A* Length = 262

 Score =  104 bits (262), Expect = 7e-26
 Identities = 37/185 (20%), Positives = 68/185 (36%), Gaps = 36/185 (19%)

Query: 257 SKASKAGAVAAPSKSAKPTAN-GPFTDLPVSGVRGVIAKRLLQSKQV------------- 302
               K      P   +KP    G     PV G    + K +  + ++             
Sbjct: 7   PPPPKPKDRTIPIPISKPPVFIGKDRTEPVKGFHKAMVKTMSAALKIPHFGYCDEVDLTE 66

Query: 303 -IKLREQMNKALEKRGAKLSINDFIIKATALASRRVPEANSSWQD--TFIREYHSVDVSV 359
            +KLRE++      RG KLS   F +KA +L   + P  N+S  +    I    S ++ +
Sbjct: 67  LVKLREELKPIAFARGIKLSFMPFFLKAASLGLLQFPILNASVDENCQNITYKASHNIGI 126

Query: 360 AVNTDKGLFTPIVFDADKKGLVDISNDSRSLISFRRPVKFSEESNDVKTLAAKAKEGKLQ 419
           A++T++GL  P V +   + + +I                   + ++  L      G+L 
Sbjct: 127 AMDTEQGLIVPNVKNVQIRSIFEI-------------------ATELNRLQKLGSAGQLS 167

Query: 420 PHEFQ 424
            ++  
Sbjct: 168 TNDLI 172

>2ii3_A Lipoamide acyltransferase component of branched-C alpha-keto acid dehydrogenase complex...; cubic core, HOMO trimer, oxidized COA-bound form; HET: CAO; 2.17A {Bos taurus} PDB: 2ihw_A* 2ii4_A* 2ii5_A* Length = 262

 Score = 53.4 bits (129), Expect = 3e-08
 Identities = 14/48 (29%), Positives = 22/48 (45%)

Query: 39  KGGTVSISNLGMFGIKNFSAIINPPQACILAVGSLSQRLVREGNDRVA 86
            GGT ++SN+G  G      +I PP+  I A+G++           V 
Sbjct: 172 IGGTFTLSNIGSIGGTYAKPVILPPEVAIGALGTIKALPRFNEKGEVC 219

>1dpb_A Dihydrolipoyl-transacetylase; dihydrolipoamide acetyltransferase; 2.50A {Azotobacter vinelandii} SCOP: c.43.1.1 PDB: 1dpd_A 1eaa_A 1eab_A* 1eac_A* 1ead_A* 1eae_A* 1eaf_A 1dpc_A Length = 243

 Score = 98.8 bits (247), Expect = 5e-24
 Identities = 37/166 (22%), Positives = 65/166 (39%), Gaps = 40/166 (24%)

Query: 278 GPFTDLPVSGVRGVIAKRLLQSKQVI---------------KLREQMNKALEKRGAKLSI 322
           G   ++P++ +  + A  L +S   +                 R       EK G KL++
Sbjct: 13  GEIEEVPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQKAVAEKAGVKLTV 72

Query: 323 NDFIIKATALASRRVPEANSSW----QDTFIREYHSVDVSVAVNTDKGLFTPIVFDADKK 378
              ++KA A   + +P+ NSS     Q    ++Y  V +  AV+T  GL  P++ + D+K
Sbjct: 73  LPLLLKACAYLLKELPDFNSSLAPSGQALIRKKY--VHIGFAVDTPDGLLVPVIRNVDQK 130

Query: 379 GLVDISNDSRSLISFRRPVKFSEESNDVKTLAAKAKEGKLQPHEFQ 424
            L+ +                   + +   LA KA+  KL     Q
Sbjct: 131 SLLQL-------------------AAEAAELAEKARSKKLGADAMQ 157

>1dpb_A Dihydrolipoyl-transacetylase; dihydrolipoamide acetyltransferase; 2.50A {Azotobacter vinelandii} SCOP: c.43.1.1 PDB: 1dpd_A 1eaa_A 1eab_A* 1eac_A* 1ead_A* 1eae_A* 1eaf_A 1dpc_A Length = 243

 Score = 51.8 bits (125), Expect = 9e-08
 Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 4/57 (7%)

Query: 39  KGGTVSISNLGMFGIKNFSAIINPPQACILAVGSLSQRLVREGND---RVALP-ALS 91
           +G   +IS+LG  G   F+ I+N P+  IL V   S + V +G     R+ LP +LS
Sbjct: 157 QGACFTISSLGHIGGTAFTPIVNAPEVAILGVSKASMQPVWDGKAFQPRLMLPLSLS 213

>3rqc_A Probable lipoamide acyltransferase; alpha beta fold; 4.01A {Thermoplasma acidophilum dsm 1728} Length = 224

 Score = 95.4 bits (238), Expect = 6e-23
 Identities = 35/162 (21%), Positives = 70/162 (43%), Gaps = 32/162 (19%)

Query: 276 ANGPFTDLPVSGVRGVIAKRLLQSKQVIKLREQMN-----------KALEKRGAKLSIND 324
           A G    L + G+R +I  ++ ++KQ++     M             + + R  K+++  
Sbjct: 2   APGREEILEMHGLRRIIFDKMTKAKQIMPHFTVMEEVDVTSMVSILDSAKARNRKVTVTG 61

Query: 325 FIIKATALASRRVPEANSSWQDT--FIREYHSVDVSVAVNTDKGLFTPIVFDADKKGLVD 382
           F+ +      ++ P  N+ + +T          ++ +AV+T  GL   ++ DAD+K +V+
Sbjct: 62  FLARIVPSILKQYPYLNAIYDETRRVYILKKYYNIGIAVDTPDGLNVFVIKDADRKSMVE 121

Query: 383 ISNDSRSLISFRRPVKFSEESNDVKTLAAKAKEGKLQPHEFQ 424
           I                   S ++   A++A+E KLQ  E Q
Sbjct: 122 I-------------------SAEISDKASRARENKLQLDEVQ 144

>3rqc_A Probable lipoamide acyltransferase; alpha beta fold; 4.01A {Thermoplasma acidophilum dsm 1728} Length = 224

 Score = 52.3 bits (126), Expect = 5e-08
 Identities = 14/41 (34%), Positives = 22/41 (53%)

Query: 39  KGGTVSISNLGMFGIKNFSAIINPPQACILAVGSLSQRLVR 79
           +  T +I+N+G  G    + IIN P+  IL V  + +R  R
Sbjct: 144 QDSTFTITNVGTIGGIMSTPIINYPEVAILGVHRILEREGR 184

>1scz_A E2, dihydrolipoamide succinyltransferase; COA-dependent acyltransferase, CAT-like, alpha and beta (2 L mixed beta-sheeet of 6 strands; 2.20A {Escherichia coli} SCOP: c.43.1.1 PDB: 1e2o_A 1c4t_A Length = 233

 Score = 88.4 bits (220), Expect = 2e-20
 Identities = 48/157 (30%), Positives = 76/157 (48%), Gaps = 35/157 (22%)

Query: 284 PVSGVRGVIAKRLLQSKQ---------------VIKLREQMNKALEKR-GAKLSINDFII 327
           P++ +R  +A+RLL++K                ++ LR+Q  +A EKR G +L    F +
Sbjct: 8   PMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYGEAFEKRHGIRLGFMSFYV 67

Query: 328 KATALASRRVPEANSSWQDTFIREYHSVDVSVAVNTDKGLFTPIVFDADKKGLVDISNDS 387
           KA   A +R PE N+S     +  ++  DVS+AV+T +GL TP++ D D  G+ DI    
Sbjct: 68  KAVVEALKRYPEVNASIDGDDVVYHNYFDVSMAVSTPRGLVTPVLRDVDTLGMADI---- 123

Query: 388 RSLISFRRPVKFSEESNDVKTLAAKAKEGKLQPHEFQ 424
                         E   +K LA K ++GKL   +  
Sbjct: 124 --------------EKK-IKELAVKGRDGKLTVEDLT 145

>1scz_A E2, dihydrolipoamide succinyltransferase; COA-dependent acyltransferase, CAT-like, alpha and beta (2 L mixed beta-sheeet of 6 strands; 2.20A {Escherichia coli} SCOP: c.43.1.1 PDB: 1e2o_A 1c4t_A Length = 233

 Score = 43.4 bits (103), Expect = 5e-05
 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 4/56 (7%)

Query: 40  GGTVSISNLGMFGIKNFSAIINPPQACILAVGSLSQRLVREGNDRVALP----ALS 91
           GG  +I+N G+FG    + IINPPQ+ IL + ++  R +        LP    ALS
Sbjct: 146 GGNFTITNGGVFGSLMSTPIINPPQSAILGMHAIKDRPMAVNGQVEILPMMYLALS 201

>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum} Length = 77

 Score = 60.7 bits (148), Expect = 3e-12
 Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 1/73 (1%)

Query: 85  VALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAG 144
             LP +   +  G IV W  KEGD + +   L E+ TDK T+   +P  G + KIL   G
Sbjct: 4   FKLPDIGEGVTEGEIVRWDVKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKILYREG 63

Query: 145 SKDVPIGKLVCII 157
              VP+G  +  I
Sbjct: 64  QV-VPVGSTLLQI 75

>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A Length = 93

 Score = 60.0 bits (146), Expect = 8e-12
 Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 2/71 (2%)

Query: 97  GTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCI 156
            T+  W  KEGD +++ D + E+++DKA++   +  +G + K+          +GK +  
Sbjct: 19  VTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDDI-AYVGKPLVD 77

Query: 157 I-VENESDVAA 166
           I  E   D+  
Sbjct: 78  IETEALKDLEH 88

>1q23_A Chloramphenicol acetyltransferase; CAT I, trimer, fusidic acid; HET: FUA; 2.18A {Escherichia coli} SCOP: c.43.1.1 PDB: 1noc_B 1pd5_A* 3u9b_A 3u9f_A* Length = 219

 Score = 62.0 bits (150), Expect = 2e-11
 Identities = 9/85 (10%), Positives = 21/85 (24%)

Query: 314 EKRGAKLSINDFIIKATALASRRVPEANSSWQDTFIREYHSVDVSVAVNTDKGLFTPIVF 373
             +  K       I   A      PE   + +D  +  + SV     V  ++      ++
Sbjct: 47  TVKKNKHKFYPAFIHILARLMNAHPEFRMAMKDGELVIWDSVHPCYTVFHEQTETFSSLW 106

Query: 374 DADKKGLVDISNDSRSLISFRRPVK 398
                      +     ++      
Sbjct: 107 SEYHDDFRQFLHIYSQDVACYGENL 131

>1q23_A Chloramphenicol acetyltransferase; CAT I, trimer, fusidic acid; HET: FUA; 2.18A {Escherichia coli} SCOP: c.43.1.1 PDB: 1noc_B 1pd5_A* 3u9b_A 3u9f_A* Length = 219

 Score = 42.0 bits (98), Expect = 1e-04
 Identities = 6/50 (12%), Positives = 14/50 (28%), Gaps = 2/50 (4%)

Query: 39  KGGTVSISNLGMFGIKNFSAIINPPQACILAVGSLSQRLVREGNDRVALP 88
                 +S        +F   +         V ++ +       D+V +P
Sbjct: 139 IENMFFVSANPWVSFTSFDLNVANMDNFFAPVFTMGK--YYTQGDKVLMP 186

>3cla_A Type III chloramphenicol acetyltransferase; transferase (acyltransferase); HET: CLM; 1.75A {Escherichia coli} SCOP: c.43.1.1 PDB: 1cla_A* 2cla_A 4cla_A* 1cia_A 1qca_A* Length = 213

 Score = 61.2 bits (148), Expect = 4e-11
 Identities = 12/116 (10%), Positives = 31/116 (26%), Gaps = 10/116 (8%)

Query: 303 IKLREQMNKALEKR-GAKLSINDFIIKATALASRRVPEANSSWQDTFIREYHSVDVSVAV 361
           +  +  +    +    +       +I   A A  +  E   + +D  +  + SVD    V
Sbjct: 30  LTSKIDITTLKKSLDDSAYKFYPVMIYLIAQAVNQFDELRMAIKDDELIVWDSVDPQFTV 89

Query: 362 NTDKGLFTPIVFDADKKGLVDISNDSRSLISFRRPVKFSEESNDVKTLAAKAKEGK 417
              +      +       +     +  S++         E       L  +    +
Sbjct: 90  FHQETETFSALSCPYSSDIDQFMVNYLSVM---------ERYKSDTKLFPQGVTPE 136

>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A Length = 79

 Score = 57.3 bits (139), Expect = 5e-11
 Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 1/76 (1%)

Query: 85  VALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAG 144
           +  P    ++  GT+ +W KK G+ +   +L+ +IETDK  M      +G +A+I+   G
Sbjct: 4   IKAPTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEG 63

Query: 145 SKDVPIGKLVCIIVEN 160
              V  G+L+  + E 
Sbjct: 64  D-TVLSGELLGKLTEG 78

>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1 Length = 80

 Score = 56.9 bits (138), Expect = 8e-11
 Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 1/75 (1%)

Query: 85  VALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAG 144
           + +P L  ++   T+ +W KK GD +   ++L EIETDK  +      +G L  +L   G
Sbjct: 5   ILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEG 64

Query: 145 SKDVPIGKLVCIIVE 159
           +  V   +++  + E
Sbjct: 65  T-TVTSRQILGRLRE 78

>1w4i_A Pyruvate dehydrogenase E2; transferase, peripheral-subunit binding domain, ultrafast folding, homologues,; NMR {Pyrobaculum aerophilum} PDB: 1w4j_A 1w4k_A Length = 62

 Score = 54.3 bits (131), Expect = 4e-10
 Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 1/60 (1%)

Query: 217 GGTRVYASPLAKRLAAEKGLDLSSIGAGSGLFGSITSADLSKASKAGAVAAPSKSAKPTA 276
           G   V A P A+RLA E G+DLS +  G+G  G IT  D+ + ++  A A     A    
Sbjct: 1   GSREVAAMPAARRLAKELGIDLSKV-KGTGPGGVITVEDVKRYAEETAKATAPAPAPKAV 59

>2coo_A Lipoamide acyltransferase component of branched- chain alpha-keto acid dehydrogenase...; E3_binding domain; NMR {Homo sapiens} Length = 70

 Score = 50.1 bits (120), Expect = 2e-08
 Identities = 19/71 (26%), Positives = 28/71 (39%), Gaps = 2/71 (2%)

Query: 206 SPTPVPSQKTSGGTRVYASPLAKRLAAEKGLDLSSIGAGSGLFGSITSADLSKASKAGAV 265
           S      Q+  G  +  A+P  +RLA E  + LS +  GSG  G I   D+    +    
Sbjct: 2   SSGSSGHQEIKGR-KTLATPAVRRLAMENNIKLSEV-VGSGKDGRILKEDILNYLEKQTG 59

Query: 266 AAPSKSAKPTA 276
           A    S   + 
Sbjct: 60  AILPPSGPSSG 70

>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 50.9 bits (122), Expect = 2e-08
 Identities = 16/75 (21%), Positives = 31/75 (41%), Gaps = 3/75 (4%)

Query: 97  GTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCI 156
           G +  +  ++G  +  G   AE+E  K  M     E G + K +   G+  +  G +V  
Sbjct: 26  GKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRV-KYIKRPGAV-LEAGCVVAR 83

Query: 157 I-VENESDVAAFKDF 170
           + +++ S V      
Sbjct: 84  LELDDPSKVHPSGPS 98

>1w85_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: a.9.1.1 PDB: 1w88_I* 1w4g_A 1w4e_A 1w4f_A 2pdd_A 2pde_A 1ebd_C* Length = 49

 Score = 47.5 bits (114), Expect = 7e-08
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 218 GTRVYASPLAKRLAAEKGLDLSSIGAGSGLFGSITSADLSKASKAGA 264
             RV A P  ++ A EKG+D+  +  G+G  G +   D+      GA
Sbjct: 4   NRRVIAMPSVRKYAREKGVDIRLV-QGTGKNGRVLKEDIDAFLAGGA 49

>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens} Length = 84

 Score = 48.5 bits (116), Expect = 9e-08
 Identities = 18/84 (21%), Positives = 34/84 (40%), Gaps = 7/84 (8%)

Query: 82  NDRVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILV 141
           ND   L + S     G +  +  ++G  +  G   AE+E  K  M     E G + K + 
Sbjct: 3   NDPTVLRSPSA----GKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRV-KYIK 57

Query: 142 PAGSKDVPIGKLVCII-VENESDV 164
             G+  +  G +V  + +++    
Sbjct: 58  RPGAV-LEAGCVVARLELDDLEHH 80

>3rnm_E Lipoamide acyltransferase component of branched-C alpha-keto acid dehydrogenase complex,...; protein-protein interaction, redox protein; HET: FAD NHE; 2.40A {Homo sapiens} PDB: 1zwv_A Length = 58

 Score = 47.6 bits (114), Expect = 1e-07
 Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 1/53 (1%)

Query: 218 GTRVYASPLAKRLAAEKGLDLSSIGAGSGLFGSITSADLSKASKAGAVAAPSK 270
           G +  A+P  + LA E  + LS +  GSG  G I   D+    +   +     
Sbjct: 5   GRKTLATPAVRNLAMENNIKLSEV-VGSGKDGRILKEDILNYLEKQTLEHHHH 56

>2eq9_C Pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase E2 component; protein-protein complex, oxidoreductase; HET: FAD; 2.09A {Thermus thermophilus} Length = 41

 Score = 43.6 bits (104), Expect = 2e-06
 Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 221 VYASPLAKRLAAEKGLDLSSIGAGSGLFGSITSADLSKASK 261
           + A P A++LA E G+ +  +  GSG  G +   D+   ++
Sbjct: 1   MLAVPAARKLARELGIPIEEV-PGSGPLGRVRVEDVRAYAE 40

>1bal_A Dihydrolipoamide succinyltransferase; glycolysis; NMR {Escherichia coli} SCOP: a.9.1.1 PDB: 1bbl_A 1w4h_A 2wav_A 2wxc_A 2btg_A 2bth_A 2cyu_A Length = 51

 Score = 41.9 bits (99), Expect = 7e-06
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 216 SGGTRVYASPLAKRLAAEKGLDLSSIGAGSGLFGSITSADLSKASKAG 263
                   SP  +RL AE  LD S+I  G+G+ G +T  D+ K     
Sbjct: 5   EEQNNDALSPAIRRLLAEHNLDASAI-KGTGVGGRLTREDVEKHLAKA 51

>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli} Length = 85

 Score = 42.7 bits (101), Expect = 1e-05
 Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 2/78 (2%)

Query: 96  MGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVC 155
           +  +     K GDK+     L  +E DKA+M    P  G + ++ V  G K V  G L+ 
Sbjct: 10  IVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDK-VKTGSLI- 67

Query: 156 IIVENESDVAAFKDFKDD 173
           +I E E    A    K +
Sbjct: 68  MIFEVEGAAPAAAPAKQE 85

>2eq7_C 2-oxoglutarate dehydrogenase E2 component; protein-protein complex, oxidoreductase; HET: FAD NAD; 1.80A {Thermus thermophilus} Length = 40

 Score = 41.0 bits (97), Expect = 1e-05
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 223 ASPLAKRLAAEKGLDLSSIGAGSGLFGSITSADLSKA 259
           A P A+RL  EKG+  + +  G+GL G I   D+ + 
Sbjct: 2   AMPAAERLMQEKGVSPAEV-QGTGLGGRILKEDVMRH 37

>2i9d_A Chloramphenicol acetyltransferase; structural genomics, PSI- protein structure initiative, midwest center for structural genomics; 2.30A {Bacteroides thetaiotaomicron} Length = 217

 Score = 44.4 bits (104), Expect = 2e-05
 Identities = 13/111 (11%), Positives = 30/111 (27%), Gaps = 15/111 (13%)

Query: 316 RGAKLSINDFIIKATALASRRVPEANSSWQ-DTFIREYHSVDVSVAV-NTDKGLFTPIVF 373
           + A  S     + A   A+  +PE       D  +  Y ++D+   +   + G F    F
Sbjct: 46  KAAGQSFFLHYLYAVLRAANEIPEFRYRIDPDGRVVLYDTIDMLSPIKIKENGKFFTTRF 105

Query: 374 DADKKGLVDISNDSRSLISFRRPVKFSEESNDVKTLAAKAKEGKLQPHEFQ 424
                             +F +  +     + +            +  +  
Sbjct: 106 PYHN-----------DFDTFYQEAR--LIIDAIPEDGDPYAAENEEVADGD 143

>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1 Length = 81

 Score = 41.1 bits (97), Expect = 3e-05
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 105 KEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCII 157
             GD +   D L  +ETDKATM       G + ++ V  G K +  G L+ ++
Sbjct: 24  NVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGDK-ISEGGLIVVV 75

>2eq8_C Pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase E2 component; protein-protein complex, oxidoreductase; HET: FAD; 1.94A {Thermus thermophilus} Length = 40

 Score = 38.6 bits (91), Expect = 8e-05
 Identities = 17/37 (45%), Positives = 25/37 (67%), Gaps = 1/37 (2%)

Query: 223 ASPLAKRLAAEKGLDLSSIGAGSGLFGSITSADLSKA 259
           A+P  +RLA E G+DL+ +  G+GL G IT  D+ +A
Sbjct: 2   AAPSIRRLARELGVDLTRL-RGTGLAGRITEEDVRRA 37

>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1 Length = 80

 Score = 39.9 bits (94), Expect = 9e-05
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 105 KEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCII 157
           K GDK+     L  +E DKA+M    P  G + ++ V  G K V  G L+ I 
Sbjct: 23  KVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDK-VKTGSLIMIF 74

>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A Length = 79

 Score = 39.9 bits (94), Expect = 9e-05
 Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 105 KEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCII 157
           K GD +     L  +E+ KA+M   +P+ G +  + V  G K +  G  +  +
Sbjct: 21  KTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDK-LKEGDAIIEL 72

>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* Length = 1887

 Score = 41.1 bits (96), Expect = 8e-04
 Identities = 16/51 (31%), Positives = 21/51 (41%)

Query: 161 ESDVAAFKDFKDDAPPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVP 211
             D +     ++ A   A A  PA   P  AAA P P   AAPA +   + 
Sbjct: 91  TPDPSELAAKEEPAKEEAPAPTPAASAPAPAAAAPAPVAAAAPAAAAAEIA 141

>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* Length = 1887

 Score = 40.7 bits (95), Expect = 9e-04
 Identities = 18/80 (22%), Positives = 28/80 (35%), Gaps = 1/80 (1%)

Query: 152 KLVCIIVENESDVAAFKDFKDDAPPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVP 211
           K +    +     A  +  K++AP    A++   P    A AP      AA A      P
Sbjct: 86  KEIYYTPDPSELAAKEEPAKEEAPAPTPAASAPAPAA-AAPAPVAAAAPAAAAAEIADEP 144

Query: 212 SQKTSGGTRVYASPLAKRLA 231
            + +     + A  L K L 
Sbjct: 145 VKASLLLHVLVAHKLKKSLD 164

>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* Length = 1878

 Score = 41.1 bits (96), Expect = 8e-04
 Identities = 11/49 (22%), Positives = 18/49 (36%)

Query: 165 AAFKDFKDDAPPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQ 213
              +  +D+  P   A++ A   P  A A P  P  A      +  P+ 
Sbjct: 90  YDVEPIEDEPEPTPAAASSADAAPAAAPAAPAAPAAAPAPAPASAGPAA 138

>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* Length = 1878

 Score = 41.1 bits (96), Expect = 8e-04
 Identities = 13/51 (25%), Positives = 19/51 (37%)

Query: 161 ESDVAAFKDFKDDAPPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVP 211
           + +    +     A  ++  +APA  P   AA    P P  A A    PV 
Sbjct: 91  DVEPIEDEPEPTPAAASSADAAPAAAPAAPAAPAAAPAPAPASAGPAAPVQ 141

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	426
3dva_I	428	Dihydrolipoyllysine-residue acetyltransferase comp	100.0
3mae_A	256	2-oxoisovalerate dehydrogenase E2 component, dihyd	99.96
3rqc_A	224	Probable lipoamide acyltransferase; alpha beta fol	99.96
1dpb_A	243	Dihydrolipoyl-transacetylase; dihydrolipoamide ace	99.95
3b8k_A	239	PDCE2;, dihydrolipoyllysine-residue acetyltransfer	99.95
3l60_A	250	Branched-chain alpha-keto acid dehydrogenase; stru	99.95
1scz_A	233	E2, dihydrolipoamide succinyltransferase; COA-depe	99.95
2ii3_A	262	Lipoamide acyltransferase component of branched-C	99.95
1zy8_K	229	Pyruvate dehydrogenase protein X component, mitoch	99.93
3cla_A	213	Type III chloramphenicol acetyltransferase; transf	99.78
2xt6_A	1113	2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET	99.78
1q23_A	219	Chloramphenicol acetyltransferase; CAT I, trimer,	99.76
2i9d_A	217	Chloramphenicol acetyltransferase; structural geno	99.71
2dne_A	108	Dihydrolipoyllysine-residue acetyltransferase comp	99.59
2dnc_A	98	Pyruvate dehydrogenase protein X component; lipoic	99.58
1k8m_A	93	E2 component of branched-chain ahpha-ketoacid dehy	99.57
1y8o_B	128	Dihydrolipoyllysine-residue acetyltransferase COM	99.57
3crk_C	87	Dihydrolipoyllysine-residue acetyltransferase COM	99.57
1ghj_A	79	E2, E2, the dihydrolipoamide succinyltransferase c	99.52
1pmr_A	80	Dihydrolipoyl succinyltransferase; 2-oxoglutarate	99.49
3l60_A	250	Branched-chain alpha-keto acid dehydrogenase; stru	99.47
3mae_A	256	2-oxoisovalerate dehydrogenase E2 component, dihyd	99.46
2l5t_A	77	Lipoamide acyltransferase; E2 lipoyl domain; NMR {	99.45
1dpb_A	243	Dihydrolipoyl-transacetylase; dihydrolipoamide ace	99.44
2ii3_A	262	Lipoamide acyltransferase component of branched-C	99.43
1scz_A	233	E2, dihydrolipoamide succinyltransferase; COA-depe	99.43
1qjo_A	80	Dihydrolipoamide acetyltransferase; lipoyl domain,	99.42
1iyu_A	79	E2P, dihydrolipoamide acetyltransferase component	99.38
3b8k_A	239	PDCE2;, dihydrolipoyllysine-residue acetyltransfer	99.36
3rqc_A	224	Probable lipoamide acyltransferase; alpha beta fol	99.35
3dva_I	428	Dihydrolipoyllysine-residue acetyltransferase comp	99.34
1gjx_A	81	Pyruvate dehydrogenase; oxidoreductase, lipoyl dom	99.33
2k7v_A	85	Dihydrolipoyllysine-residue acetyltransferase comp	99.27
2kcc_A	84	Acetyl-COA carboxylase 2; biotinoyl domain, BCCP,	99.14
3n6r_A	681	Propionyl-COA carboxylase, alpha subunit; protein	99.13
1z6h_A	72	Biotin/lipoyl attachment protein; solution structu	99.09
2eq9_C	41	Pyruvate dehydrogenase complex, dihydrolipoamide a	99.08
1bdo_A	80	Acetyl-COA carboxylase; BCCPSC, carboxyl transfera	99.06
2eq7_C	40	2-oxoglutarate dehydrogenase E2 component; protein	99.05
3rnm_E	58	Lipoamide acyltransferase component of branched-C	99.05
2eq8_C	40	Pyruvate dehydrogenase complex, dihydrolipoamide a	99.04
2xt6_A	1113	2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET	99.04
2dn8_A	100	Acetyl-COA carboxylase 2; biotin required enzyme,	99.03
2jku_A	94	Propionyl-COA carboxylase alpha chain, mitochondri	99.0
3u9t_A	675	MCC alpha, methylcrotonyl-COA carboxylase, alpha-s	98.97
1dcz_A	77	Transcarboxylase 1.3S subunit; antiparallel beta s	98.96
1w85_I	49	Dihydrolipoyllysine-residue acetyltransferase comp	98.95
2d5d_A	74	Methylmalonyl-COA decarboxylase gamma chain; bioti	98.95
1bal_A	51	Dihydrolipoamide succinyltransferase; glycolysis;	98.95
2ejm_A	99	Methylcrotonoyl-COA carboxylase subunit alpha; bio	98.91
3va7_A	1236	KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A	98.87
3hbl_A	1150	Pyruvate carboxylase; TIM barrel, ligase; HET: BTI	98.85
2coo_A	70	Lipoamide acyltransferase component of branched- c	98.83
2f60_K	64	Pyruvate dehydrogenase protein X component; protei	98.83
1w4i_A	62	Pyruvate dehydrogenase E2; transferase, peripheral	98.81
3bg3_A	718	Pyruvate carboxylase, mitochondrial; TIM barrel, A	98.51
1zko_A	136	Glycine cleavage system H protein; TM0212, structu	98.48
2qf7_A	1165	Pyruvate carboxylase protein; multi-domain, multi-	98.46
2k32_A	116	A; NMR {Campylobacter jejuni} PDB: 2k33_A*	98.35
1q23_A	219	Chloramphenicol acetyltransferase; CAT I, trimer,	98.24
1onl_A	128	Glycine cleavage system H protein; hybrid barrel-s	97.89
1hpc_A	131	H protein of the glycine cleavage system; transit	97.84
3a7l_A	128	H-protein, glycine cleavage system H protein; lipo	97.79
3cla_A	213	Type III chloramphenicol acetyltransferase; transf	97.71
2i9d_A	217	Chloramphenicol acetyltransferase; structural geno	97.21
2f1m_A	277	Acriflavine resistance protein A; helical hairpin,	97.08
3lnn_A	359	Membrane fusion protein (MFP) heavy metal cation Z	96.97
3fpp_A	341	Macrolide-specific efflux protein MACA; hexameric	96.94
3ne5_B	413	Cation efflux system protein CUSB; transmembrane h	96.93
3klr_A	125	Glycine cleavage system H protein; antiparallel be	96.91
3mxu_A	143	Glycine cleavage system H protein; seattle structu	96.77
3tzu_A	137	GCVH, glycine cleavage system H protein 1; ssgcid,	96.7
2dn8_A	100	Acetyl-COA carboxylase 2; biotin required enzyme,	96.64
1vf7_A	369	Multidrug resistance protein MEXA; alpha hairpin,	96.53
3hgb_A	155	Glycine cleavage system H protein; ssgcid, niaid,	96.22
4dk0_A	369	Putative MACA; alpha-hairpin, lipoyl, beta-barrel,	96.05
1z6h_A	72	Biotin/lipoyl attachment protein; solution structu	95.91
1dcz_A	77	Transcarboxylase 1.3S subunit; antiparallel beta s	95.73
2d5d_A	74	Methylmalonyl-COA decarboxylase gamma chain; bioti	95.67
2k32_A	116	A; NMR {Campylobacter jejuni} PDB: 2k33_A*	95.33
2kcc_A	84	Acetyl-COA carboxylase 2; biotinoyl domain, BCCP,	95.19
3na6_A	331	Succinylglutamate desuccinylase/aspartoacylase; st	94.87
3cdx_A	354	Succinylglutamatedesuccinylase/aspartoacylase; str	94.55
3fmc_A	368	Putative succinylglutamate desuccinylase / aspart;	94.28
2ejm_A	99	Methylcrotonoyl-COA carboxylase subunit alpha; bio	94.16
2jku_A	94	Propionyl-COA carboxylase alpha chain, mitochondri	94.16
1bdo_A	80	Acetyl-COA carboxylase; BCCPSC, carboxyl transfera	93.16
2l5t_A	77	Lipoamide acyltransferase; E2 lipoyl domain; NMR {	92.29
1f3z_A	161	EIIA-GLC, glucose-specific phosphocarrier; phospho	91.61
1qjo_A	80	Dihydrolipoamide acetyltransferase; lipoyl domain,	91.53
3crk_C	87	Dihydrolipoyllysine-residue acetyltransferase COM	91.46
2k7v_A	85	Dihydrolipoyllysine-residue acetyltransferase comp	91.28
1ghj_A	79	E2, E2, the dihydrolipoamide succinyltransferase c	91.26
1gjx_A	81	Pyruvate dehydrogenase; oxidoreductase, lipoyl dom	91.14
3lnn_A	359	Membrane fusion protein (MFP) heavy metal cation Z	91.09
2f1m_A	277	Acriflavine resistance protein A; helical hairpin,	91.06
1k8m_A	93	E2 component of branched-chain ahpha-ketoacid dehy	91.04
2dnc_A	98	Pyruvate dehydrogenase protein X component; lipoic	90.9
2dne_A	108	Dihydrolipoyllysine-residue acetyltransferase comp	90.25
2gpr_A	154	Glucose-permease IIA component; phosphotransferase	90.25
1ax3_A	162	Iiaglc, glucose permease IIA domain; phosphotransf	89.61
3fpp_A	341	Macrolide-specific efflux protein MACA; hexameric	89.55
1y8o_B	128	Dihydrolipoyllysine-residue acetyltransferase COM	89.25
2qj8_A	332	MLR6093 protein; structural genomics, joint center	88.77
1pmr_A	80	Dihydrolipoyl succinyltransferase; 2-oxoglutarate	87.12
1iyu_A	79	E2P, dihydrolipoamide acetyltransferase component	86.74
3ne5_B	413	Cation efflux system protein CUSB; transmembrane h	86.63
1vf7_A	369	Multidrug resistance protein MEXA; alpha hairpin,	86.58
3n6r_A	681	Propionyl-COA carboxylase, alpha subunit; protein	85.54
2xha_A	193	NUSG, transcription antitermination protein NUSG;	84.88
4dk0_A	369	Putative MACA; alpha-hairpin, lipoyl, beta-barrel,	82.81
3hbl_A	1150	Pyruvate carboxylase; TIM barrel, ligase; HET: BTI	80.23
3bg3_A	718	Pyruvate carboxylase, mitochondrial; TIM barrel, A	80.05

>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A

Probab=100.00  E-value=8.2e-60  Score=486.81  Aligned_cols=311  Identities=30%  Similarity=0.493  Sum_probs=38.9

Q ss_pred             ceEeccCCCCCcccceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEcCCc
Q psy16142         83 DRVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENES  162 (426)
Q Consensus        83 ~~i~mP~lg~s~d~g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~~  162 (426)
                      ..|+||+||++|++|+|.+|++++||.|++||.||+|||||++++|+||++|+|.++++++|+ .|.+|++|++|+.+++
T Consensus         3 ~~i~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vEt~K~~~~i~ap~~G~v~~i~v~~G~-~V~~G~~l~~i~~~~~   81 (428)
T 3dva_I            3 FEFKLPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGT-VATVGQTLITLDAPGY   81 (428)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             eeEEcCCCCCCCccEEEEEEEcCCCCEECCCCEEEEEEeCCeeEEEecCCCeEEEEEEeCCCC-EeCCCCEEEEEecCCc
Confidence            358999999999999999999999999999999999999999999999999999999999999 8999999999987654


Q ss_pred             chhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccChHHHHHHHHcCCCCcCcc
Q psy16142        163 DVAAFKDFKDDAPPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRVYASPLAKRLAAEKGLDLSSIG  242 (426)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gIDl~~v~  242 (426)
                      +.......   ....++.   .+.+...+.+.+.  +...+..   +..........++++||+||+||+|+||||++| 
T Consensus        82 ~~~~~~~~---~~~~~~~---~~~~~~~~~~~~~--~~~~~~~---~~~~~~~~~~~~~~asP~~R~lA~e~gvdl~~v-  149 (428)
T 3dva_I           82 ENMTFKGQ---EQEEAKK---EEKTETVSKEEKV--DAVAPNA---PAAEAEAGPNRRVIAMPSVRKYAREKGVDIRLV-  149 (428)
T ss_dssp             ---------------------------------------------------------CCCCCHHHHHHHHHTTCCGGGS-
T ss_pred             cccccccc---ccccccc---CCCcccCCccccc--cCCCccc---cccccccccccccccCHHHHHHHHHcCCCHHHC-
Confidence            33211000   0000000   0000000000000  0000000   000000112346789999999999999999999 


Q ss_pred             CCCCCCCcccchhhhhhhhcCCCCC--C---C---CCCCC---CCCCCceeecCCchhhHHHHHHHhhHHH---------
Q psy16142        243 AGSGLFGSITSADLSKASKAGAVAA--P---S---KSAKP---TANGPFTDLPVSGVRGVIAKRLLQSKQV---------  302 (426)
Q Consensus       243 ~gtG~~GrI~~~DV~~~~~~~~~~~--~---~---~~~~~---~~~~~~~~~~ls~~Rk~iA~~m~~S~~~---------  302 (426)
                      +|||++|||+++||+++........  .   .   .+..+   .....++++||++|||+||++|++||++         
T Consensus       150 ~gtG~~GrI~k~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~s~~Rk~ia~~m~~S~~~~P~~~~~~e  229 (428)
T 3dva_I          150 QGTGKNGRVLKEDIDAFLAGGAKPAPAAAEEKAAPAAAKPATTEGEFPETREKMSGIRRAIAKAMVHSKHTAPHVTLMDE  229 (428)
T ss_dssp             CCCSTTSCCCTTTTTTTSCC------------------------------------------------------------
T ss_pred             CCCCCCCceeHHHHHHHhhccccccccccccccccCCCCccccccCCccccccCcHHHHHHHHHHHHhcccCCeEEEEEE
Confidence            9999999999999999753211000  0   0   00000   0112357899999999999999999977         


Q ss_pred             ------HHHHHHHHHHHHHhCCcccHHHHHHHHHHHHhhhcccccceeeC--CceEEcCCCcEEEEeecCCceEeecccC
Q psy16142        303 ------IKLREQMNKALEKRGAKLSINDFIIKATALASRRVPEANSSWQD--TFIREYHSVDVSVAVNTDKGLFTPIVFD  374 (426)
Q Consensus       303 ------~~lr~~~~~~~~~~~~~~s~~~~~~ka~~~al~~~p~~n~~~~~--~~i~~~~~v~i~iAv~~~~GL~~pvi~~  374 (426)
                            +++|+++++..++.|.|+||++||+||+++||++||+||++|++  +.|++|++|||||||++++||++|||+|
T Consensus       230 vDvt~l~~~rk~~~~~~~~~g~kls~~~~~ikAva~Al~~~P~~Na~~~~~~~~i~~~~~v~igiAV~t~~GL~vPvi~~  309 (428)
T 3dva_I          230 ADVTKLVAHRKKFKAIAAEKGIKLTFLPYVVKALVSALREYPVLNTSIDDETEEIIQKHYYNIGIAADTDRGLLVPVIKH  309 (428)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EeHHHHHHHHHHhhhhHhhcCCCcCHHHHHHHHHHHHHHhCHHhhheEecCCCeEEEcCccCeEEEEEcCCceEEeeecc
Confidence                  78899888766677999999999999999999999999999988  7899999999999999999999999999


Q ss_pred             cCCCCHHHHHhccccccccccCcCCccchHHHHHHHHHHHcCCCCcccccC
Q psy16142        375 ADKKGLVDISNDSRSLISFRRPVKFSEESNDVKTLAAKAKEGKLQPHEFQV  425 (426)
Q Consensus       375 a~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~l~~~e~~~  425 (426)
                      ++++||.+|++                   ++++|++|||+|+|+++||+|
T Consensus       310 a~~~sl~eia~-------------------~~~~l~~~ar~gkL~~~e~~g  341 (428)
T 3dva_I          310 ADRKPIFALAQ-------------------EINELAEKARDGKLTPGEMKG  341 (428)
T ss_dssp             ---------------------------------------------------
T ss_pred             CCCCCHHHHHH-------------------HHHHHHHHHHcCCCCccccCC
Confidence            99999999999                   999999999999999999987

>3mae_A 2-oxoisovalerate dehydrogenase E2 component, dihydrolipamide acetyltransferase; 2-oxoacid dehydrogenases acyltransferase; 2.50A {Listeria monocytogenes}

Probab=99.96  E-value=1.4e-29  Score=244.68  Aligned_cols=129  Identities=32%  Similarity=0.553  Sum_probs=122.4

Q ss_pred             CCceeecCCchhhHHHHHHHhhHHH---------------HHHHHHHHHHHHH-hCCcccHHHHHHHHHHHHhhhccccc
Q psy16142        278 GPFTDLPVSGVRGVIAKRLLQSKQV---------------IKLREQMNKALEK-RGAKLSINDFIIKATALASRRVPEAN  341 (426)
Q Consensus       278 ~~~~~~~ls~~Rk~iA~~m~~S~~~---------------~~lr~~~~~~~~~-~~~~~s~~~~~~ka~~~al~~~p~~n  341 (426)
                      ..++++||++|||+||++|++||++               +++|+++|+.+.+ .|.|+|+++||+||+++||++||+||
T Consensus        16 ~~~~~~pl~~~rk~ia~~m~~S~~~iP~~t~~~evDvt~l~~~r~~~k~~~~~~~g~kls~~~~iikAva~AL~~~P~~N   95 (256)
T 3mae_A           16 AGDKEIPINGVRKAIAKHMSVSKQEIPHAWMMVEVDATGLVRYRNAVKDSFKKEEGYSLTYFAFFIKAVAQALKEFPQLN   95 (256)
T ss_dssp             CSCEEEECCHHHHHHHHHHHHHHHHSCEEEEEEEEECHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHCTTTS
T ss_pred             CCceEEeCcHHHHHHHHHHHHHhccCCeEEEEEEEEHHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHHHHHHhCHHhh
Confidence            4568899999999999999999987               8899999876543 58999999999999999999999999


Q ss_pred             ceeeCCceEEcCCCcEEEEeecCCceEeecccCcCCCCHHHHHhccccccccccCcCCccchHHHHHHHHHHHcCCCCcc
Q psy16142        342 SSWQDTFIREYHSVDVSVAVNTDKGLFTPIVFDADKKGLVDISNDSRSLISFRRPVKFSEESNDVKTLAAKAKEGKLQPH  421 (426)
Q Consensus       342 ~~~~~~~i~~~~~v~i~iAv~~~~GL~~pvi~~a~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~l~~~  421 (426)
                      ++|+++.|++|++|||||||++++||+||||+|+|++|+.+|++                   ++++|++|||+|+|+++
T Consensus        96 a~~~~~~i~~~~~vnigiAV~t~~GL~vPvi~~ad~~sl~ei~~-------------------~i~~l~~~Ar~gkL~~~  156 (256)
T 3mae_A           96 STWAGDKIIEHANINISIAIAAGDLLYVPVIKNADEKSIKGIAR-------------------EISELAGKARNGKLSQA  156 (256)
T ss_dssp             EEEETTEEEECSSCCEEECCCCTTSCCCCEETTGGGSCHHHHHH-------------------HHHHHHHHHHTTCCCHH
T ss_pred             hEEecCEEEEcCcEEEEeEEEcCCceEEEEEcCCCCCCHHHHHH-------------------HHHHHHHHHhcCCCCch
Confidence            99999999999999999999999999999999999999999999                   99999999999999999


Q ss_pred             cccC
Q psy16142        422 EFQV  425 (426)
Q Consensus       422 e~~~  425 (426)
                      ||+|
T Consensus       157 e~~g  160 (256)
T 3mae_A          157 DMEG  160 (256)
T ss_dssp             HHSC
T ss_pred             hcCC
Confidence            9987

>3rqc_A Probable lipoamide acyltransferase; alpha beta fold; 4.01A {Thermoplasma acidophilum dsm 1728}

Probab=99.96  E-value=8.7e-29  Score=235.01  Aligned_cols=125  Identities=26%  Similarity=0.434  Sum_probs=116.2

Q ss_pred             CCceeecCCchhhHHHHHHHhhHHH---------------HHHHHHHHHHHHHhCCcccHHHHHHHHHHHHhhhcccccc
Q psy16142        278 GPFTDLPVSGVRGVIAKRLLQSKQV---------------IKLREQMNKALEKRGAKLSINDFIIKATALASRRVPEANS  342 (426)
Q Consensus       278 ~~~~~~~ls~~Rk~iA~~m~~S~~~---------------~~lr~~~~~~~~~~~~~~s~~~~~~ka~~~al~~~p~~n~  342 (426)
                      +..+++||++|||+||++|++||++               +++|+++++    .|.|+|+++|++||+++||++||+||+
T Consensus         4 ~~~~~~p~~~~r~~ia~~m~~s~~~~P~~~~~~evDvt~l~~~r~~~k~----~g~kls~~~~~ikA~~~Al~~~P~~N~   79 (224)
T 3rqc_A            4 GREEILEMHGLRRIIFDKMTKAKQIMPHFTVMEEVDVTSMVSILDSAKA----RNRKVTVTGFLARIVPSILKQYPYLNA   79 (224)
T ss_dssp             --CBCCCCCHHHHHHHHHHHHHHHHSCEEEEEECCBTHHHHHHHHHHTT----TTCCCCHHHHHHHHHHHHHHHSGGGSB
T ss_pred             CCceEeeCcHHHHHHHHHHHHHhcCCCeEEEEEEEEHHHHHHHHHHHhh----cCCCCCHHHHHHHHHHHHHHhCHHhhe
Confidence            3457789999999999999999988               677777653    388999999999999999999999999


Q ss_pred             eeeCC--ceEEcCCCcEEEEeecCCceEeecccCcCCCCHHHHHhccccccccccCcCCccchHHHHHHHHHHHcCCCCc
Q psy16142        343 SWQDT--FIREYHSVDVSVAVNTDKGLFTPIVFDADKKGLVDISNDSRSLISFRRPVKFSEESNDVKTLAAKAKEGKLQP  420 (426)
Q Consensus       343 ~~~~~--~i~~~~~v~i~iAv~~~~GL~~pvi~~a~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~l~~  420 (426)
                      +|+++  .|++|++||||+||++++||+||||+|+|++|+.+|++                   ++++|+++||+|+|++
T Consensus        80 ~~~~~~~~i~~~~~v~igiAV~~~~GL~vPvi~~a~~~sl~~i~~-------------------~~~~l~~~ar~~~L~~  140 (224)
T 3rqc_A           80 IYDETRRVYILKKYYNIGIAVDTPDGLNVFVIKDADRKSMVEISA-------------------EISDKASRARENKLQL  140 (224)
T ss_dssp             BCCSSTTCCCEECSCCEEEEEECSSCEEEEEESCGGGSCHHHHHH-------------------HHHHHHHHHTTTCCCG
T ss_pred             EEeCCCCEEEEeCccceEeEEEcCCceEEeEECCCCCCCHHHHHH-------------------HHHHHHHHHHcCCCCc
Confidence            99987  89999999999999999999999999999999999999                   9999999999999999


Q ss_pred             ccccC
Q psy16142        421 HEFQV  425 (426)
Q Consensus       421 ~e~~~  425 (426)
                      +||+|
T Consensus       141 ~e~~g  145 (224)
T 3rqc_A          141 DEVQD  145 (224)
T ss_dssp             GGSCC
T ss_pred             cccCC
Confidence            99987

>1dpb_A Dihydrolipoyl-transacetylase; dihydrolipoamide acetyltransferase; 2.50A {Azotobacter vinelandii} SCOP: c.43.1.1 PDB: 1dpd_A 1eaa_A 1eab_A* 1eac_A* 1ead_A* 1eae_A* 1eaf_A 1dpc_A

Probab=99.95  E-value=1.5e-28  Score=236.13  Aligned_cols=128  Identities=27%  Similarity=0.391  Sum_probs=121.0

Q ss_pred             CceeecCCchhhHHHHHHHhhHHH---------------HHHHHHHHHHHHHhCCcccHHHHHHHHHHHHhhhcccccce
Q psy16142        279 PFTDLPVSGVRGVIAKRLLQSKQV---------------IKLREQMNKALEKRGAKLSINDFIIKATALASRRVPEANSS  343 (426)
Q Consensus       279 ~~~~~~ls~~Rk~iA~~m~~S~~~---------------~~lr~~~~~~~~~~~~~~s~~~~~~ka~~~al~~~p~~n~~  343 (426)
                      .++.+||++|||.||++|.+||++               +++|+++++..++.|.++|+++|++||+++||++||+||++
T Consensus        14 ~~~~~~~~~~rk~ia~~m~~S~~~~P~~~~~~evDvt~l~~~r~~~k~~~~~~g~kls~~~~~ikA~~~Al~~~P~~Na~   93 (243)
T 1dpb_A           14 EIEEVPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQKAVAEKAGVKLTVLPLLLKACAYLLKELPDFNSS   93 (243)
T ss_dssp             CCCCCCCCHHHHHHHHHHHHHHHHSCEEEEEEEEECHHHHHHHHHTHHHHHHTTCCCCSHHHHHHHHHHHHHHSGGGGEE
T ss_pred             CceEeeCcHHHHHHHHHHHHhCcCCCeEEEEEEEEhHHHHHHHHHHhhhhhhccCCCChHHHHHHHHHHHHHhChHhhEE
Confidence            456789999999999999999987               88899888766677899999999999999999999999999


Q ss_pred             eeCC--ceEEcCCCcEEEEeecCCceEeecccCcCCCCHHHHHhccccccccccCcCCccchHHHHHHHHHHHcCCCCcc
Q psy16142        344 WQDT--FIREYHSVDVSVAVNTDKGLFTPIVFDADKKGLVDISNDSRSLISFRRPVKFSEESNDVKTLAAKAKEGKLQPH  421 (426)
Q Consensus       344 ~~~~--~i~~~~~v~i~iAv~~~~GL~~pvi~~a~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~l~~~  421 (426)
                      |+++  .|++|++|||||||++++||+||||+|+|++|+.+|++                   ++++|++|||+|+|+++
T Consensus        94 ~~~~~~~i~~~~~v~igiAV~t~~GL~vPvi~~a~~~sl~ei~~-------------------~~~~l~~~ar~~kL~~~  154 (243)
T 1dpb_A           94 LAPSGQALIRKKYVHIGFAVDTPDGLLVPVIRNVDQKSLLQLAA-------------------EAAELAEKARSKKLGAD  154 (243)
T ss_dssp             ECTTSSCEEECSSCCEEECEEETTEEECCEETTGGGSCHHHHHH-------------------HHHHHHHHHHTTCCCGG
T ss_pred             EecCCCeEEEeCceeEEEEEECCCcEEEEEeCCCCCCCHHHHHH-------------------HHHHHHHHHHcCCCCcc
Confidence            9864  89999999999999999999999999999999999999                   99999999999999999


Q ss_pred             cccC
Q psy16142        422 EFQV  425 (426)
Q Consensus       422 e~~~  425 (426)
                      ||+|
T Consensus       155 e~~g  158 (243)
T 1dpb_A          155 AMQG  158 (243)
T ss_dssp             GGSC
T ss_pred             ccCC
Confidence            9987

>3b8k_A PDCE2;, dihydrolipoyllysine-residue acetyltransferase; central beta-sheet surrounded by five alpha-helices; 8.80A {Homo sapiens}

Probab=99.95  E-value=2.1e-28  Score=234.54  Aligned_cols=128  Identities=64%  Similarity=0.942  Sum_probs=120.2

Q ss_pred             CCceeecCCchhhHHHHHHHhhHHH---------------HHHHHHHHHHHHHhCCcccHHHHHHHHHHHHhhhcccccc
Q psy16142        278 GPFTDLPVSGVRGVIAKRLLQSKQV---------------IKLREQMNKALEKRGAKLSINDFIIKATALASRRVPEANS  342 (426)
Q Consensus       278 ~~~~~~~ls~~Rk~iA~~m~~S~~~---------------~~lr~~~~~~~~~~~~~~s~~~~~~ka~~~al~~~p~~n~  342 (426)
                      +.++++||++|||+||++|++||++               +++|+++++..+. +.++|+++|++||+++||++||+||+
T Consensus        10 ~~~~~~~~~~~rk~ia~~m~~s~~~~P~~~~~~evDvt~l~~~r~~~k~~~~~-~~kls~~~~~ikAv~~Al~~~P~~Na   88 (239)
T 3b8k_A           10 GVFTDIPISNIRRVIAQRLMQSKQTIPHYYLSIDVNMGEVLLVRKELNKILEG-RSKISVNDFIIKASALACLKVPEANS   88 (239)
T ss_dssp             CSCCCSSSCCSHHHHHHHHHHHHHHCCCCCEEEEECCTTHHHHHHHTHHHHTT-SSCCCHHHHHHHHHHHHHHHCCCSCT
T ss_pred             CCceeccCChHHHHHHHHHHHhccCCCeEEEEEEEEcHHHHHHHHHHHhhhhc-cCCCCHHHHHHHHHHHHHHhChHhhE
Confidence            4467889999999999999999988               8899998875443 36999999999999999999999999


Q ss_pred             eeeCCceEEcCCCcEEEEeecCCceEeecccCcCCCCHHHHHhccccccccccCcCCccchHHHHHHHHHHHcCCCCccc
Q psy16142        343 SWQDTFIREYHSVDVSVAVNTDKGLFTPIVFDADKKGLVDISNDSRSLISFRRPVKFSEESNDVKTLAAKAKEGKLQPHE  422 (426)
Q Consensus       343 ~~~~~~i~~~~~v~i~iAv~~~~GL~~pvi~~a~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~l~~~e  422 (426)
                      +|+++.|++|++||||+||++++||++|||+|+|++|+.+|++                   ++++|++|||+|+|+++|
T Consensus        89 ~~~~~~i~~~~~v~igvAV~~~~GL~vPvi~~a~~~~l~~i~~-------------------~~~~l~~~ar~~kL~~~e  149 (239)
T 3b8k_A           89 SWMDTVIRQNHVVDVSVAVSTPAGLITPIVFNAHIKGVETIAN-------------------DVVSLATKAREGKLQPHE  149 (239)
T ss_dssp             TSCCCSSSCSCCCCEEECEECSSCEECCEECCSSCCCHHHHHH-------------------HHHHHHHHHHTTCCCGGG
T ss_pred             EEECCEEEEeCceeEEEEEEcCCcEEEEEEcCCCCCCHHHHHH-------------------HHHHHHHHHHcCCCCccc
Confidence            9999999999999999999999999999999999999999999                   999999999999999999


Q ss_pred             ccC
Q psy16142        423 FQV  425 (426)
Q Consensus       423 ~~~  425 (426)
                      |+|
T Consensus       150 ~~g  152 (239)
T 3b8k_A          150 FQG  152 (239)
T ss_dssp             GCC
T ss_pred             cCC
Confidence            987

>3l60_A Branched-chain alpha-keto acid dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: c.43.1.0

Probab=99.95  E-value=2.2e-28  Score=235.61  Aligned_cols=121  Identities=25%  Similarity=0.455  Sum_probs=113.7

Q ss_pred             eeecCCchhhHHHHHHHhhHHH---------------HHHHHHHHHHHHHhCCcccHHHHHHHHHHHHhhhcccccceee
Q psy16142        281 TDLPVSGVRGVIAKRLLQSKQV---------------IKLREQMNKALEKRGAKLSINDFIIKATALASRRVPEANSSWQ  345 (426)
Q Consensus       281 ~~~~ls~~Rk~iA~~m~~S~~~---------------~~lr~~~~~~~~~~~~~~s~~~~~~ka~~~al~~~p~~n~~~~  345 (426)
                      ++ ||++|||+||++|++||++               +++|++++    +.|.|+|+++||+||+++||++||+||++|+
T Consensus        16 ~r-pls~~rk~ia~~m~~S~~~iP~~~~~~evDvt~l~~~r~~~k----~~~~kls~~~~iikAva~AL~~~P~~Na~~~   90 (250)
T 3l60_A           16 VR-PVHGVHARMAEKMTLSHKEIPTAKASVEVICAELLRLRDRFV----SAAPEITPFALTLRLLVIALKHNVILNSTWV   90 (250)
T ss_dssp             CC-CCCHHHHHHHHHHHHHHHHCCEEEEEEEEECHHHHHHHHHHT----TTCTTCCHHHHHHHHHHHHHHHCGGGSEEEE
T ss_pred             CC-CCcHHHHHHHHHHHHHhhcCCeEEEEEEEEHHHHHHHHHHHh----hcCCCCCHHHHHHHHHHHHHHhCHHhhEEEe
Confidence            44 9999999999999999988               77777765    3588999999999999999999999999998


Q ss_pred             C----CceEEcCCCcEEEEeecCCceEeecccCcCCCCHHHHHhccccccccccCcCCccchHHHHHHHHHHHcCCCCcc
Q psy16142        346 D----TFIREYHSVDVSVAVNTDKGLFTPIVFDADKKGLVDISNDSRSLISFRRPVKFSEESNDVKTLAAKAKEGKLQPH  421 (426)
Q Consensus       346 ~----~~i~~~~~v~i~iAv~~~~GL~~pvi~~a~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~l~~~  421 (426)
                      +    +.|++|++|||||||++++||+||||+|+|+||+.+|++                   ++++|++|||+|||+++
T Consensus        91 ~~~~~~~i~~~~~vnigvAV~t~~GL~vPvi~~ad~~sl~ei~~-------------------~i~~l~~~Ar~gkL~~~  151 (250)
T 3l60_A           91 DSGEGPQVHVHRGVHLGFGAATERGLLVPVVTDAQDKNTRELAS-------------------RVAELITGAREGTLTPA  151 (250)
T ss_dssp             CTTTSCEEEECSSCCEEECEEETTEEECCEETTGGGCCHHHHHH-------------------HHHHHHHHHHHTCCCGG
T ss_pred             ccCCCCeEEEcCceeEEEEEEcCCCeEEeEEecCCCCCHHHHHH-------------------HHHHHHHHHHcCCCChh
Confidence            5    389999999999999999999999999999999999999                   99999999999999999


Q ss_pred             cccC
Q psy16142        422 EFQV  425 (426)
Q Consensus       422 e~~~  425 (426)
                      ||+|
T Consensus       152 e~~g  155 (250)
T 3l60_A          152 ELRG  155 (250)
T ss_dssp             GGSC
T ss_pred             hcCC
Confidence            9997

>1scz_A E2, dihydrolipoamide succinyltransferase; COA-dependent acyltransferase, CAT-like, alpha and beta (2 L mixed beta-sheeet of 6 strands; 2.20A {Escherichia coli} SCOP: c.43.1.1 PDB: 1e2o_A 1c4t_A

Probab=99.95  E-value=1.2e-28  Score=235.47  Aligned_cols=127  Identities=35%  Similarity=0.558  Sum_probs=119.9

Q ss_pred             ceeecCCchhhHHHHHHHhhHHH---------------HHHHHHHHHHHH-HhCCcccHHHHHHHHHHHHhhhcccccce
Q psy16142        280 FTDLPVSGVRGVIAKRLLQSKQV---------------IKLREQMNKALE-KRGAKLSINDFIIKATALASRRVPEANSS  343 (426)
Q Consensus       280 ~~~~~ls~~Rk~iA~~m~~S~~~---------------~~lr~~~~~~~~-~~~~~~s~~~~~~ka~~~al~~~p~~n~~  343 (426)
                      .+++||++|||+||++|++||++               +++|+++++.+. +.|.++|+++|++||+++||++||+||++
T Consensus         4 ~~~~~~~~~r~~ia~~m~~S~~~~P~~~~~~evdvt~l~~~r~~~k~~~~~~~g~kls~~~~~ikA~~~Al~~~P~~Na~   83 (233)
T 1scz_A            4 EKRVPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYGEAFEKRHGIRLGFMSFYVKAVVEALKRYPEVNAS   83 (233)
T ss_dssp             CCCCCCCHHHHHHHHHHHHHHTTSCEEEEEEEEECHHHHHHHHHHHHHHHHHHSSCCCSHHHHHHHHHHHHHHCTTTTCE
T ss_pred             ceeccCCHHHHHHHHHHHHhccCCCEEEEEEEEEcHHHHHHHHHHHhhhhhhcCCcccHHHHHHHHHHHHHHhChHhhEE
Confidence            35679999999999999999986               888998887543 46899999999999999999999999999


Q ss_pred             eeCCceEEcCCCcEEEEeecCCceEeecccCcCCCCHHHHHhccccccccccCcCCccchHHHHHHHHHHHcCCCCcccc
Q psy16142        344 WQDTFIREYHSVDVSVAVNTDKGLFTPIVFDADKKGLVDISNDSRSLISFRRPVKFSEESNDVKTLAAKAKEGKLQPHEF  423 (426)
Q Consensus       344 ~~~~~i~~~~~v~i~iAv~~~~GL~~pvi~~a~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~l~~~e~  423 (426)
                      |+++.|++|++|||||||++++||+||||+||+++|+.+|++                   ++++|++|||+|+|+++||
T Consensus        84 ~~~~~i~~~~~v~igiAV~~~~GL~vPvi~~a~~~~l~~i~~-------------------~~~~l~~~ar~~kL~~~e~  144 (233)
T 1scz_A           84 IDGDDVVYHNYFDVSMAVSTPRGLVTPVLRDVDTLGMADIEK-------------------KIKELAVKGRDGKLTVEDL  144 (233)
T ss_dssp             EETTEEECCSSCCEEECEEETTEEECCEETTGGGCCHHHHHH-------------------HHHHHHHHTTTTCCCHHHH
T ss_pred             EeCCEEEEeCceeEEEEEEcCCcEEEEEEcCCCCCCHHHHHH-------------------HHHHHHHHHHcCCCCcccc
Confidence            999999999999999999999999999999999999999999                   9999999999999999999


Q ss_pred             cC
Q psy16142        424 QV  425 (426)
Q Consensus       424 ~~  425 (426)
                      +|
T Consensus       145 ~g  146 (233)
T 1scz_A          145 TG  146 (233)
T ss_dssp             SC
T ss_pred             CC
Confidence            87

>2ii3_A Lipoamide acyltransferase component of branched-C alpha-keto acid dehydrogenase complex...; cubic core, HOMO trimer, oxidized COA-bound form; HET: CAO; 2.17A {Bos taurus} PDB: 2ihw_A* 2ii4_A* 2ii5_A*

Probab=99.95  E-value=3.6e-28  Score=235.74  Aligned_cols=129  Identities=26%  Similarity=0.419  Sum_probs=120.6

Q ss_pred             CCceeecCCchhhHHHHHHHhhHHH--------------HHHHHHHHHHHHHhCCcccHHHHHHHHHHHHhhhcccccce
Q psy16142        278 GPFTDLPVSGVRGVIAKRLLQSKQV--------------IKLREQMNKALEKRGAKLSINDFIIKATALASRRVPEANSS  343 (426)
Q Consensus       278 ~~~~~~~ls~~Rk~iA~~m~~S~~~--------------~~lr~~~~~~~~~~~~~~s~~~~~~ka~~~al~~~p~~n~~  343 (426)
                      ..++++||++|||+||++|++|++.              +++|+++|+..++.|.++|+++||+||+++||++||+||++
T Consensus        29 ~~~~~~p~~~~rk~ia~~m~~S~~~P~~~~~~evDvt~l~~~r~~~k~~~~~~g~kls~~~~~ikAva~Al~~~P~~Na~  108 (262)
T 2ii3_A           29 GKDRTEPVKGFHKAMVKTMSAALKIPHFGYCDEVDLTELVKLREELKPIAFARGIKLSFMPFFLKAASLGLLQFPILNAS  108 (262)
T ss_dssp             CCCEEEECCGGGHHHHHHHHHGGGSCEEEEEEEEECHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHCGGGSEE
T ss_pred             CCcceecCCHHHHHHHHHHHHhhhCCeEEEEEEEEhHHHHHHHHHHhhhhhhccCCccHHHHHHHHHHHHHHhChHhhEE
Confidence            3467889999999999999999744              88999998766667899999999999999999999999999


Q ss_pred             eeCC--ceEEcCCCcEEEEeecCCceEeecccCcCCCCHHHHHhccccccccccCcCCccchHHHHHHHHHHHcCCCCcc
Q psy16142        344 WQDT--FIREYHSVDVSVAVNTDKGLFTPIVFDADKKGLVDISNDSRSLISFRRPVKFSEESNDVKTLAAKAKEGKLQPH  421 (426)
Q Consensus       344 ~~~~--~i~~~~~v~i~iAv~~~~GL~~pvi~~a~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~l~~~  421 (426)
                      |+++  .|++|++|||||||++++||+||||+||+++|+.+|++                   ++++|++|||+|||+++
T Consensus       109 ~~~~~~~i~~~~~v~igiAV~t~~GL~vPvi~~a~~~sl~ei~~-------------------~~~~l~~~ar~~kL~~~  169 (262)
T 2ii3_A          109 VDENCQNITYKASHNIGIAMDTEQGLIVPNVKNVQIRSIFEIAT-------------------ELNRLQKLGSAGQLSTN  169 (262)
T ss_dssp             ECTTSCEEEECSSCCEEECEEETTEEECCEETTGGGCCHHHHHH-------------------HHHHHHHHHHHTCCCHH
T ss_pred             EeCCCCEEEEecccceEEEEEcCCCEEEEEecCCCCCCHHHHHH-------------------HHHHHHHHHHhCCCCcc
Confidence            9864  89999999999999999999999999999999999999                   99999999999999999


Q ss_pred             cccC
Q psy16142        422 EFQV  425 (426)
Q Consensus       422 e~~~  425 (426)
                      ||+|
T Consensus       170 e~~g  173 (262)
T 2ii3_A          170 DLIG  173 (262)
T ss_dssp             HHSC
T ss_pred             cCCC
Confidence            9987

>3cla_A Type III chloramphenicol acetyltransferase; transferase (acyltransferase); HET: CLM; 1.75A {Escherichia coli} SCOP: c.43.1.1 PDB: 1cla_A* 2cla_A 4cla_A* 1cia_A 1qca_A*

Probab=99.78  E-value=3.6e-19  Score=167.57  Aligned_cols=88  Identities=16%  Similarity=0.159  Sum_probs=84.0

Q ss_pred             CcccHHHHHHHHHHHHhhhcccccceeeCCceEEcCCCcEEEEe-ecCCceEeecccCcCCCCHHHHHhccccccccccC
Q psy16142        318 AKLSINDFIIKATALASRRVPEANSSWQDTFIREYHSVDVSVAV-NTDKGLFTPIVFDADKKGLVDISNDSRSLISFRRP  396 (426)
Q Consensus       318 ~~~s~~~~~~ka~~~al~~~p~~n~~~~~~~i~~~~~v~i~iAv-~~~~GL~~pvi~~a~~~~l~~i~~~~~~~~~~~~~  396 (426)
                      .++|+++|++||+++||++||++|++|+++.|++|++||||+|| ++++||++||+++ +.+++.+|++           
T Consensus        46 ~~ls~~~~~ikAv~~Al~~~P~~Na~~~~~~i~~~~~v~igiAVf~t~~GL~vpvi~~-~~~~~~~i~~-----------  113 (213)
T 3cla_A           46 SAYKFYPVMIYLIAQAVNQFDELRMAIKDDELIVWDSVDPQFTVFHQETETFSALSCP-YSSDIDQFMV-----------  113 (213)
T ss_dssp             SSCCHHHHHHHHHHHHHTTCGGGSEEEETTEEEEESCCEEEEEEEETTTTEEEEEECC-CCSSHHHHHH-----------
T ss_pred             hCCCHHHHHHHHHHHHHhhCHHhhEEEECCEEEEEeccceeEEEEeCCCceEEEEEec-CCCCHHHHHH-----------
Confidence            48999999999999999999999999999999999999999999 9999999999887 5699999999           


Q ss_pred             cCCccchHHHHHHHHHHHcC-CCCc-ccccC
Q psy16142        397 VKFSEESNDVKTLAAKAKEG-KLQP-HEFQV  425 (426)
Q Consensus       397 ~~~~~~~~~~~~l~~~a~~~-~l~~-~e~~~  425 (426)
                              ++++|++|||+| +|++ +||+|
T Consensus       114 --------~~~~l~~~ar~~~kL~~~~~~~g  136 (213)
T 3cla_A          114 --------NYLSVMERYKSDTKLFPQGVTPE  136 (213)
T ss_dssp             --------HHHHHHHHHTTCCSSSTTSSCCS
T ss_pred             --------HHHHHHHHHhhcCCCCCCCCCCC
Confidence                    999999999996 9988 88987

>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}

Probab=99.78  E-value=1.7e-19  Score=204.13  Aligned_cols=104  Identities=19%  Similarity=0.324  Sum_probs=91.8

Q ss_pred             HHHHHHHHHHHH-HhCCcccHHHHHHHHHHHHhhhcccccceeeCC----ceEEcCCCcEEEEeecC--Cc---eEeecc
Q psy16142        303 IKLREQMNKALE-KRGAKLSINDFIIKATALASRRVPEANSSWQDT----FIREYHSVDVSVAVNTD--KG---LFTPIV  372 (426)
Q Consensus       303 ~~lr~~~~~~~~-~~~~~~s~~~~~~ka~~~al~~~p~~n~~~~~~----~i~~~~~v~i~iAv~~~--~G---L~~pvi  372 (426)
                      +++|+++|+.+. +.|.|+|+++||+||+++||++||+||++|+++    .|+++++|||||||+++  +|   |+||||
T Consensus        23 ~~~R~~~k~~~~~~~g~kls~~~~iikAva~AL~~~P~~Na~~~~~~~~~~i~~~~~vnigiAV~t~~~~G~~gL~vPvI  102 (1113)
T 2xt6_A           23 IDNRVVINNHLKRTRGGKISFTHLLGYAIVQAVKKFPNMNRHFAVVDGKPTAITPAHTNLGLAIDLQGKDGNRSLVVAAI  102 (1113)
T ss_dssp             HHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHCGGGGCEEEESSSSEEEECCSSCCEEEEC-----------CEEEE
T ss_pred             HHHHHHHHhhhhhhcCCCccHHHHHHHHHHHHHHhChHhhEEEeccCCCceEEEeCcccEEEEEeccCCCCceeEEeeee
Confidence            778888887654 358999999999999999999999999999854    69999999999999997  56   999999


Q ss_pred             cCcCCCCHHHHHhccccccccccCcCCccchHHHHHHHHHHHcCCCCcccccC
Q psy16142        373 FDADKKGLVDISNDSRSLISFRRPVKFSEESNDVKTLAAKAKEGKLQPHEFQV  425 (426)
Q Consensus       373 ~~a~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~l~~~e~~~  425 (426)
                      +||++|||.+|++                   ++++|++|||+|||+++||+|
T Consensus       103 ~~a~~~sl~ei~~-------------------~i~~l~~rAr~gkL~~~d~~g  136 (1113)
T 2xt6_A          103 KRCETMRFGQFIA-------------------AYEDIVRRARDGKLTAEDFSG  136 (1113)
T ss_dssp             CCGGGCCHHHHHH-------------------HHHHHHHHHTTTCCCGGGTSC
T ss_pred             cCCCCCCHHHHHH-------------------HHHHHHHHHhcCCCCccccCC
Confidence            9999999999999                   999999999999999999998

>1q23_A Chloramphenicol acetyltransferase; CAT I, trimer, fusidic acid; HET: FUA; 2.18A {Escherichia coli} SCOP: c.43.1.1 PDB: 1noc_B 1pd5_A* 3u9b_A 3u9f_A*

Probab=99.76  E-value=2e-18  Score=163.17  Aligned_cols=87  Identities=15%  Similarity=0.055  Sum_probs=82.2

Q ss_pred             CcccHHHHHHHHHHHHhhhcccccceeeCCceEEcCCCcEEEEe-ecCCceEeecccCcCCCCHHHHHhccccccccccC
Q psy16142        318 AKLSINDFIIKATALASRRVPEANSSWQDTFIREYHSVDVSVAV-NTDKGLFTPIVFDADKKGLVDISNDSRSLISFRRP  396 (426)
Q Consensus       318 ~~~s~~~~~~ka~~~al~~~p~~n~~~~~~~i~~~~~v~i~iAv-~~~~GL~~pvi~~a~~~~l~~i~~~~~~~~~~~~~  396 (426)
                      .++|+++|++||+++||++||++|++|+++.|++|++||||+|| ++++||++||++. ..+++.+|++           
T Consensus        51 ~~ls~~~~~ikAv~~Al~~~P~~Na~~~~~~i~~~~~v~igiAV~~t~~GL~~pvi~~-~~~~l~~i~~-----------  118 (219)
T 1q23_A           51 NKHKFYPAFIHILARLMNAHPEFRMAMKDGELVIWDSVHPCYTVFHEQTETFSSLWSE-YHDDFRQFLH-----------  118 (219)
T ss_dssp             TTCCHHHHHHHHHHHHHTTCGGGSEEEETTEEEEESCCEEEEEEEETTTTEEEEEECC-CCSSHHHHHH-----------
T ss_pred             cCCCHHHHHHHHHHHHHHhChHhhEEEECCEEEEecccCeEEEEEecCCcEEEEEEec-CCCCHHHHHH-----------
Confidence            38999999999999999999999999999999999999999999 9999999999997 5689999999           


Q ss_pred             cCCccchHHHHHHHHHHHcC-CCCc-ccccC
Q psy16142        397 VKFSEESNDVKTLAAKAKEG-KLQP-HEFQV  425 (426)
Q Consensus       397 ~~~~~~~~~~~~l~~~a~~~-~l~~-~e~~~  425 (426)
                              ++++|++|||+| +|++ +|+ |
T Consensus       119 --------~~~~l~~~ar~~~kL~~~~~~-g  140 (219)
T 1q23_A          119 --------IYSQDVACYGENLAYFPKGFI-E  140 (219)
T ss_dssp             --------HHHHHHHHHTTCCSSSTTCCC-S
T ss_pred             --------HHHHHHHHHHccCCCCCcccc-C
Confidence                    999999999998 6976 888 6

>2i9d_A Chloramphenicol acetyltransferase; structural genomics, PSI- protein structure initiative, midwest center for structural genomics; 2.30A {Bacteroides thetaiotaomicron}

Probab=99.71  E-value=8.3e-18  Score=158.71  Aligned_cols=87  Identities=15%  Similarity=0.167  Sum_probs=82.5

Q ss_pred             cccHHHHHHHHHHHHhhhcccccceee-CCceEEcCCCcEEEEe-ecCCceEeecccCcCCCCHHHHHhccccccccccC
Q psy16142        319 KLSINDFIIKATALASRRVPEANSSWQ-DTFIREYHSVDVSVAV-NTDKGLFTPIVFDADKKGLVDISNDSRSLISFRRP  396 (426)
Q Consensus       319 ~~s~~~~~~ka~~~al~~~p~~n~~~~-~~~i~~~~~v~i~iAv-~~~~GL~~pvi~~a~~~~l~~i~~~~~~~~~~~~~  396 (426)
                      ++|+++|++||+++||++||++|++|+ ++.|++|++||||+|| ++++||++||+.. ..+++.+|++           
T Consensus        49 ~ls~~~~~ikAv~~Al~~~P~~n~~~~~~~~i~~~~~i~igvAVf~t~~GL~~pv~~~-~~~~~~~i~~-----------  116 (217)
T 2i9d_A           49 GQSFFLHYLYAVLRAANEIPEFRYRIDPDGRVVLYDTIDMLSPIKIKENGKFFTTRFP-YHNDFDTFYQ-----------  116 (217)
T ss_dssp             TCCHHHHHHHHHHHHHHHSGGGGEEECTTSCEEEESCCEEEEEEECSTTSCEEEEEEC-CCSSHHHHHH-----------
T ss_pred             CCCHHHHHHHHHHHHHHhCHHhheEEcCCCEEEEecccCeEEEEEecCCceEeEEEec-CCCCHHHHHH-----------
Confidence            899999999999999999999999999 8899999999999999 9999999999874 5689999999           


Q ss_pred             cCCccchHHHHHHHHHHHc-CCCCcc------cccC
Q psy16142        397 VKFSEESNDVKTLAAKAKE-GKLQPH------EFQV  425 (426)
Q Consensus       397 ~~~~~~~~~~~~l~~~a~~-~~l~~~------e~~~  425 (426)
                              ++++|++|||+ |+|+|+      ||+|
T Consensus       117 --------~~~~l~~~ar~~~kL~~~~~~~~~e~~g  144 (217)
T 2i9d_A          117 --------EARLIIDAIPEDGDPYAAENEEVADGDY  144 (217)
T ss_dssp             --------HHHHHHHHCCSSCCTTHHHHHHHHHTCC
T ss_pred             --------HHHHHHHHHHhcCCCCCccccccccCCC
Confidence                    99999999999 599995      8987

>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}

Probab=99.59  E-value=1.6e-15  Score=127.96  Aligned_cols=87  Identities=62%  Similarity=1.069  Sum_probs=78.5

Q ss_pred             cCceEeccCCCCCcccceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEcC
Q psy16142         81 GNDRVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVEN  160 (426)
Q Consensus        81 ~~~~i~mP~lg~s~d~g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~  160 (426)
                      ....+.||.++.++..|+|.+|++++||.|++||.|++||+||+.++|+||++|+|.++++++|++.|.+|++|++|...
T Consensus         6 ~~~~i~~P~lg~~~~~G~v~~~~v~~Gd~V~~G~~L~~iE~~K~~~~i~Ap~~G~V~~i~v~~G~~~V~~G~~l~~i~~~   85 (108)
T 2dne_A            6 SGQKVPLPSLSPTMQAGTIARWEKKEGDKINEGDLIAEVETDKATVGFESLEECYMAKILVAEGTRDVPIGAIICITVGK   85 (108)
T ss_dssp             CCEEEECCCCSSSCCEEEEEECSSCTTCEECTTSEEEEEECSSCEEEEECSSSEEEEECSSCTTCCSEETTCEEEEEESC
T ss_pred             cceEEecCCCCCCcccEEEEEEEcCCCCEecCCCEEEEEEcCcceeEEeCCCCEEEEEEEeCCCCeeecCCCEEEEEecC
Confidence            45678999999999999999999999999999999999999999999999999999999999996149999999999876


Q ss_pred             Ccchhcc
Q psy16142        161 ESDVAAF  167 (426)
Q Consensus       161 ~~~~~~~  167 (426)
                      ++....+
T Consensus        86 ~~~~~~~   92 (108)
T 2dne_A           86 PEDIEAF   92 (108)
T ss_dssp             HHHHHHH
T ss_pred             ccchhhh
Confidence            5554433

>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.58  E-value=1.6e-15  Score=125.78  Aligned_cols=80  Identities=48%  Similarity=0.806  Sum_probs=75.5

Q ss_pred             CceEeccCCCCCcccceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccc-cCCcEEEEEEcC
Q psy16142         82 NDRVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDV-PIGKLVCIIVEN  160 (426)
Q Consensus        82 ~~~i~mP~lg~s~d~g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v-~vG~~l~~i~~~  160 (426)
                      ...+.||.++.++..|++.+|++++||.|++||.|++||+||+.++|+||++|+|.++++++|+ .| .+|++|++|...
T Consensus         7 ~~~i~~P~lg~~~~~G~i~~~~v~~Gd~V~~G~~L~~ie~~K~~~~i~Ap~~G~v~~i~v~~G~-~Vv~~G~~l~~i~~~   85 (98)
T 2dnc_A            7 GIKILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGS-KNIRLGSLIGLIVEE   85 (98)
T ss_dssp             CEEEECCCCSTTCSEECEEEESSCTTCEECTTSEEEEEECSSCEEEEECSSCEEEEECSSCTTC-CCEESSCEEEEEECT
T ss_pred             cEEEECCCCCCCCccEEEEEEEcCCCCEeCCCCEEEEEEcccceeEEeCCCCEEEEEEEeCCCC-EEcCCCCEEEEEecC
Confidence            4578999999999999999999999999999999999999999999999999999999999999 88 999999999865


Q ss_pred             Cc
Q psy16142        161 ES  162 (426)
Q Consensus       161 ~~  162 (426)
                      ++
T Consensus        86 ~~   87 (98)
T 2dnc_A           86 GE   87 (98)
T ss_dssp             TS
T ss_pred             CC
Confidence            44

>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A

Probab=99.57  E-value=3e-15  Score=122.86  Aligned_cols=77  Identities=22%  Similarity=0.343  Sum_probs=73.9

Q ss_pred             ceEeccCCCCCcccceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEcC
Q psy16142         83 DRVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVEN  160 (426)
Q Consensus        83 ~~i~mP~lg~s~d~g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~  160 (426)
                      ..+.+|.++.++..|++.+|++++||.|++||.|++||+||+.++|+||++|+|.++++++|+ .|.+|++|++|...
T Consensus         5 ~~i~~P~lg~~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~K~~~~i~Ap~~G~V~~i~v~~G~-~V~~G~~l~~i~~~   81 (93)
T 1k8m_A            5 VQFKLSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDD-IAYVGKPLVDIETE   81 (93)
T ss_dssp             EEEECCSSCTTSCCEEEEEECCCTTCEECSSSCCEEEECSSCEEECCCSSCEEEEEECCCSSC-EECTTSEEEEEECS
T ss_pred             eEEEcCCCCCCCCCEEEEEEEcCCcCEECCCCEEEEEEcCCcEEEEEcCCCEEEEEEEcCCCC-EeCCCCEEEEEecC
Confidence            568899999999999999999999999999999999999999999999999999999999999 89999999999764

>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A

Probab=99.57  E-value=4e-15  Score=129.10  Aligned_cols=84  Identities=69%  Similarity=1.130  Sum_probs=77.0

Q ss_pred             CceEeccCCCCCcccceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEcCC
Q psy16142         82 NDRVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENE  161 (426)
Q Consensus        82 ~~~i~mP~lg~s~d~g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~  161 (426)
                      ...+.||.++.++..|+|.+|++++||.|++||.|++||+||++++|+||++|+|.++++++|++.|.+|++|++|...+
T Consensus        27 ~~~i~~P~lG~~~~~G~V~~~~V~~Gd~V~~Gd~L~~iEa~K~~~~I~Ap~~G~V~~i~v~~Gd~~V~~G~~L~~i~~~~  106 (128)
T 1y8o_B           27 HMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIVEKE  106 (128)
T ss_dssp             EEEEECCCSSTTCSEEEEEEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCSEETTCEEEEEESSG
T ss_pred             ceeEEcCCCCCCcccEEEEEEecCCCCEecCCCEEEEEEcCcceeEEeCCCCeEEEEEEeCCCCeeecCCCEEEEEecCc
Confidence            46789999999999999999999999999999999999999999999999999999999999961499999999998765


Q ss_pred             cchh
Q psy16142        162 SDVA  165 (426)
Q Consensus       162 ~~~~  165 (426)
                      +...
T Consensus       107 ~~~~  110 (128)
T 1y8o_B          107 ADIS  110 (128)
T ss_dssp             GGGG
T ss_pred             cchh
Confidence            5433

>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*

Probab=99.57  E-value=3.1e-15  Score=121.01  Aligned_cols=81  Identities=69%  Similarity=1.120  Sum_probs=74.9

Q ss_pred             CceEeccCCCCCcccceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEcCC
Q psy16142         82 NDRVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENE  161 (426)
Q Consensus        82 ~~~i~mP~lg~s~d~g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~  161 (426)
                      ...+.||.++.++..|.+.+|++++||.|++||.|++||+||+.++|+||++|+|.++++++|++.|.+|++|++|...+
T Consensus         5 ~~~i~~P~lg~~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~~V~~G~~l~~i~~~~   84 (87)
T 3crk_C            5 HMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIVEKE   84 (87)
T ss_dssp             EEEEECCCSSTTCCEEEEEEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCCEETTCEEEEEESSS
T ss_pred             ceEEeCCCCCCCCCcEEEEEEEcCCCCEEcCCCEEEEEECCcccceeecCcCcEEEEEEECCCCeEECCCCEEEEEEccc
Confidence            35688999999999999999999999999999999999999999999999999999999999961399999999998654


Q ss_pred             c
Q psy16142        162 S  162 (426)
Q Consensus       162 ~  162 (426)
                      +
T Consensus        85 ~   85 (87)
T 3crk_C           85 A   85 (87)
T ss_dssp             T
T ss_pred             C
Confidence            3

>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A

Probab=99.52  E-value=1.4e-14  Score=114.74  Aligned_cols=75  Identities=29%  Similarity=0.573  Sum_probs=72.2

Q ss_pred             eEeccCCCCCcccceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEc
Q psy16142         84 RVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVE  159 (426)
Q Consensus        84 ~i~mP~lg~s~d~g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~  159 (426)
                      .+.||.++.++..|.+.+|++++||.|++||.|+++|+||+.++|.||++|+|.++++++|+ .|..|++|+.|..
T Consensus         3 ~i~~P~~g~~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~-~v~~g~~l~~i~~   77 (79)
T 1ghj_A            3 DIKAPTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGD-TVLSGELLGKLTE   77 (79)
T ss_dssp             EEECCCCCSSCSCEEECCCSSCTTSEECSSCEEEEEECSSCEEEEECSSCEEEEEESSCTTC-EECTTCEEEEECC
T ss_pred             EEECCCCCCCCCCEEEEEEEcCCCCEECCCCEEEEEEccceeEEEEcCCCEEEEEEEcCCcC-EECCCCEEEEEec
Confidence            57899999999999999999999999999999999999999999999999999999999999 8999999999864

>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1

Probab=99.49  E-value=5.3e-15  Score=117.67  Aligned_cols=76  Identities=28%  Similarity=0.501  Sum_probs=72.3

Q ss_pred             ceEeccCCCCCcccceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEc
Q psy16142         83 DRVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVE  159 (426)
Q Consensus        83 ~~i~mP~lg~s~d~g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~  159 (426)
                      ..+.||.++.++..|++.+|++++||.|++||.|+++|+||+.++|.||++|+|.++++++|+ .|.+|++|++|..
T Consensus         3 ~~i~~P~~g~~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~-~v~~G~~l~~i~~   78 (80)
T 1pmr_A            3 VDILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGT-TVTSRQILGRLRE   78 (80)
T ss_dssp             CCEECCCCCSCCSCEECCBCCCCTTCCBSSSCCBCBCCSSSCCCCCBCCSBCCCCBCTTCTTC-EECSSSEEEBCCC
T ss_pred             cEEEcCCCCCCCccEEEEEEECCCcCEECCCCEEEEEEccceEEEEECCCCEEEEEEEcCCcC-EECCCCEEEEEec
Confidence            357899999999999999999999999999999999999999999999999999999999999 8999999998854

>3l60_A Branched-chain alpha-keto acid dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: c.43.1.0

Probab=99.47  E-value=2.8e-15  Score=144.20  Aligned_cols=100  Identities=24%  Similarity=0.360  Sum_probs=87.3

Q ss_pred             ccccccchhhhHHHHHHHHHh--------cCCcEEEecCcccccccceeeeCCccchhhhccccccccccccCceE--ec
Q psy16142         18 WHFLLYLLPWRWEPLLAGLRK--------KGGTVSISNLGMFGIKNFSAIINPPQACILAVGSLSQRLVREGNDRV--AL   87 (426)
Q Consensus        18 ~~~~l~~i~~e~~~L~~kar~--------~gGtfTIsn~G~~G~~~~tpIInppq~aIlgvg~~~~~p~v~~~~~i--~m   87 (426)
                      .+++|.+|++++++|+.++|+        +||||||||+|++|+++|+|||||||+||+++|++.++|++.++...  .+
T Consensus       125 d~~sl~ei~~~i~~l~~~Ar~gkL~~~e~~ggTftISNlG~~G~~~ftpIinppq~aIL~vG~i~~~pv~~~g~i~~r~~  204 (250)
T 3l60_A          125 QDKNTRELASRVAELITGAREGTLTPAELRGSTFTVSNFGALGVDDGVPVINHPEAAILGLGAIKPRPVVVGGEVVARPT  204 (250)
T ss_dssp             GGCCHHHHHHHHHHHHHHHHHTCCCGGGGSCCSEEEECGGGGTCSSCCCCCCTTCSEEEEECCCEEEEEEETTEEEEEEE
T ss_pred             CCCCHHHHHHHHHHHHHHHHcCCCChhhcCCCEEEEEcCCCCCcceeEeeeCCCCceEEEecceEEEeEEECCEEEEEEE
Confidence            458999999999999999998        89999999999999999999999999999999999999998776432  34


Q ss_pred             cCCCCCcc-----cceeeecccccCCccccCcchh
Q psy16142         88 PALSPTME-----MGTIVSWAKKEGDKLNEGDLLA  117 (426)
Q Consensus        88 P~lg~s~d-----~g~i~~w~v~vGd~Ve~gd~L~  117 (426)
                      ..++.++|     |+...+|+..+.+.++.++.|.
T Consensus       205 m~lsLs~DHRviDGa~aa~Fl~~lk~~Le~P~~l~  239 (250)
T 3l60_A          205 MTLTCVFDHRVVDGAQVAQFMCELRDLIESPETAL  239 (250)
T ss_dssp             EEEEEEEETTTCCHHHHHHHHHHHHHHHHSHHHHT
T ss_pred             eEEEEEecccccCHHHHHHHHHHHHHHHhCHHHHh
Confidence            44555544     8899999999999999887765

>3mae_A 2-oxoisovalerate dehydrogenase E2 component, dihydrolipamide acetyltransferase; 2-oxoacid dehydrogenases acyltransferase; 2.50A {Listeria monocytogenes}

Probab=99.46  E-value=4.9e-15  Score=142.97  Aligned_cols=97  Identities=22%  Similarity=0.208  Sum_probs=85.2

Q ss_pred             ccccchhhhHHHHHHHHHh--------cCCcEEEecCcccccccceeeeCCccchhhhccccccccccccCceE--eccC
Q psy16142         20 FLLYLLPWRWEPLLAGLRK--------KGGTVSISNLGMFGIKNFSAIINPPQACILAVGSLSQRLVREGNDRV--ALPA   89 (426)
Q Consensus        20 ~~l~~i~~e~~~L~~kar~--------~gGtfTIsn~G~~G~~~~tpIInppq~aIlgvg~~~~~p~v~~~~~i--~mP~   89 (426)
                      ++|.+|++++++|+.+||+        +||||||||+|++|+++|+|||||||+||+++|++.++|++.++...  .+..
T Consensus       132 ~sl~ei~~~i~~l~~~Ar~gkL~~~e~~ggTftISNlG~~G~~~ftpIInppq~aIL~vG~i~~~pv~~~g~i~~r~~m~  211 (256)
T 3mae_A          132 KSIKGIAREISELAGKARNGKLSQADMEGGTFTVNSTGSFGSVQSMGIINHPQAAILQVESIVKRPVIIDDMIAVRDMVN  211 (256)
T ss_dssp             SCHHHHHHHHHHHHHHHHTTCCCHHHHSCCSEEEECGGGGTCSEEECCCCTTSSEEEEEEEEEEEEEEETTEEEEEEEEE
T ss_pred             CCHHHHHHHHHHHHHHHhcCCCCchhcCCCEEEEecCCCCCccceEcccCCCCceEEEecccEEEEEEECCEEEEeEEEE
Confidence            8999999999999999998        89999999999999999999999999999999999999998766332  3444


Q ss_pred             CCCCcc-----cceeeecccccCCccccCcch
Q psy16142         90 LSPTME-----MGTIVSWAKKEGDKLNEGDLL  116 (426)
Q Consensus        90 lg~s~d-----~g~i~~w~v~vGd~Ve~gd~L  116 (426)
                      ++.++|     |+.+.+|+..+.+.++.++.+
T Consensus       212 lsLs~DHRviDGa~aa~Fl~~lk~~Le~P~~~  243 (256)
T 3mae_A          212 LCLSIDHRILDGLLAGKFLQAIKANVEKISKE  243 (256)
T ss_dssp             EEEEEETTTCCHHHHHHHHHHHHHHHHTCCTT
T ss_pred             EEEEEccccccHHHHHHHHHHHHHHHhChHHH
Confidence            555544     889999999999999988654

>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}

Probab=99.45  E-value=1e-13  Score=109.17  Aligned_cols=74  Identities=35%  Similarity=0.568  Sum_probs=71.5

Q ss_pred             eEeccCCCCCcccceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEE
Q psy16142         84 RVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIV  158 (426)
Q Consensus        84 ~i~mP~lg~s~d~g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~  158 (426)
                      .+.+|.++.+...|.+.+|++++||.|++||.|+++|++|+..+|.||++|+|.++++++|+ .|..|++|+.|.
T Consensus         3 ~i~~P~~g~~~~~G~v~~~~v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~-~v~~g~~l~~i~   76 (77)
T 2l5t_A            3 EFKLPDIGEGVTEGEIVRWDVKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKILYREGQ-VVPVGSTLLQID   76 (77)
T ss_dssp             EEECCCCSSSCCCEEEEECSCCTTCEECSCCCCCEEESSSCEEECCCCCCEEEEEECCCTTC-EECSCSEEEEEE
T ss_pred             EEECCCCCCCCccEEEEEEEeCCCCEECCCCEEEEEEccceEEEEECCCCEEEEEEEeCCcC-EECCCCEEEEEE
Confidence            57899999999999999999999999999999999999999999999999999999999999 899999999985

>1dpb_A Dihydrolipoyl-transacetylase; dihydrolipoamide acetyltransferase; 2.50A {Azotobacter vinelandii} SCOP: c.43.1.1 PDB: 1dpd_A 1eaa_A 1eab_A* 1eac_A* 1ead_A* 1eae_A* 1eaf_A 1dpc_A

Probab=99.44  E-value=9.1e-15  Score=140.16  Aligned_cols=99  Identities=26%  Similarity=0.343  Sum_probs=85.3

Q ss_pred             cccccchhhhHHHHHHHHHh--------cCCcEEEecCcccccccceeeeCCccchhhhccccccccccccCceE--ecc
Q psy16142         19 HFLLYLLPWRWEPLLAGLRK--------KGGTVSISNLGMFGIKNFSAIINPPQACILAVGSLSQRLVREGNDRV--ALP   88 (426)
Q Consensus        19 ~~~l~~i~~e~~~L~~kar~--------~gGtfTIsn~G~~G~~~~tpIInppq~aIlgvg~~~~~p~v~~~~~i--~mP   88 (426)
                      .+++.+|++++++|+.++|+        +||||||||+|++|+.+|+|||||||+||+++|++.++|++.++...  .+.
T Consensus       129 ~~sl~ei~~~~~~l~~~ar~~kL~~~e~~ggtftISnlG~~g~~~~tpIin~pq~aIl~vG~~~~~pv~~~g~i~~~~~m  208 (243)
T 1dpb_A          129 QKSLLQLAAEAAELAEKARSKKLGADAMQGACFTISSLGHIGGTAFTPIVNAPEVAILGVSKASMQPVWDGKAFQPRLML  208 (243)
T ss_dssp             GSCHHHHHHHHHHHHHHHHTTCCCGGGGSCCSEEEEECTTTCCSCCCCCCCTTSSEEEEECCCEEEEEECSSSEEEEEEE
T ss_pred             CCCHHHHHHHHHHHHHHHHcCCCCccccCCCEEEEEcCCCCCccceECccCCCCCeEEEccccEEEEEEECCeEEEEEEE
Confidence            37999999999999999998        89999999999999999999999999999999999999998765422  334


Q ss_pred             CCCCC-----cccceeeecccccCCccccCcchh
Q psy16142         89 ALSPT-----MEMGTIVSWAKKEGDKLNEGDLLA  117 (426)
Q Consensus        89 ~lg~s-----~d~g~i~~w~v~vGd~Ve~gd~L~  117 (426)
                      .++.+     +||+.+.+|+....+.++.++.|+
T Consensus       209 ~lsls~DHRviDGa~aa~Fl~~lk~~le~p~~ll  242 (243)
T 1dpb_A          209 PLSLSYDCRVINGAAAARFTKRLGDLLADIRAIL  242 (243)
T ss_dssp             EEEEEEETTTSCHHHHHHHHHHHHHHHHCGGGGG
T ss_pred             EEEEEECcccccHHHHHHHHHHHHHHHhCHHhhh
Confidence            45555     458889999999999999876553

>2ii3_A Lipoamide acyltransferase component of branched-C alpha-keto acid dehydrogenase complex...; cubic core, HOMO trimer, oxidized COA-bound form; HET: CAO; 2.17A {Bos taurus} PDB: 2ihw_A* 2ii4_A* 2ii5_A*

Probab=99.43  E-value=1.1e-14  Score=141.07  Aligned_cols=100  Identities=17%  Similarity=0.192  Sum_probs=85.5

Q ss_pred             ccccccchhhhHHHHHHHHHh--------cCCcEEEecCcccccccceeeeCCccchhhhccccccccccc-cCce--Ee
Q psy16142         18 WHFLLYLLPWRWEPLLAGLRK--------KGGTVSISNLGMFGIKNFSAIINPPQACILAVGSLSQRLVRE-GNDR--VA   86 (426)
Q Consensus        18 ~~~~l~~i~~e~~~L~~kar~--------~gGtfTIsn~G~~G~~~~tpIInppq~aIlgvg~~~~~p~v~-~~~~--i~   86 (426)
                      ..+++.+|++++++|+.++|+        +||||||||+|++|+++|+|||||||+||+++|++.++|++. ++..  ..
T Consensus       143 ~~~sl~ei~~~~~~l~~~ar~~kL~~~e~~ggTftISNlG~~G~~~~tPIinppq~aIL~vG~~~~~pv~~~~g~i~~r~  222 (262)
T 2ii3_A          143 QIRSIFEIATELNRLQKLGSAGQLSTNDLIGGTFTLSNIGSIGGTYAKPVILPPEVAIGALGTIKALPRFNEKGEVCKAQ  222 (262)
T ss_dssp             GGCCHHHHHHHHHHHHHHHHHTCCCHHHHSCCCEEEECGGGTCCSCEECCCCTTCCEEEEECCCEEEEEECTTSCEEEEE
T ss_pred             CCCCHHHHHHHHHHHHHHHHhCCCCcccCCCCEEEEEeCCCCCccceECccCCCcceEEEcCccEEEEEEecCCcEEEEe
Confidence            447999999999999999998        899999999999999999999999999999999999999885 4422  13


Q ss_pred             ccCCCCC-----cccceeeecccccCCccccCcchh
Q psy16142         87 LPALSPT-----MEMGTIVSWAKKEGDKLNEGDLLA  117 (426)
Q Consensus        87 mP~lg~s-----~d~g~i~~w~v~vGd~Ve~gd~L~  117 (426)
                      +..++.+     +||+.+.+|+....+.++.++.|+
T Consensus       223 ~m~lsls~DHRviDGa~aa~Fl~~lk~~Le~P~~ll  258 (262)
T 2ii3_A          223 IMNVSWSADHRIIDGATVSRFSNLWKSYLENPAFML  258 (262)
T ss_dssp             EEEEEEEEETTTCCHHHHHHHHHHHHHHHHSTHHHH
T ss_pred             eeEEEEEECcceecHHHHHHHHHHHHHHHhCHHHHH
Confidence            3445555     458899999999999999887554

>1scz_A E2, dihydrolipoamide succinyltransferase; COA-dependent acyltransferase, CAT-like, alpha and beta (2 L mixed beta-sheeet of 6 strands; 2.20A {Escherichia coli} SCOP: c.43.1.1 PDB: 1e2o_A 1c4t_A

Probab=99.43  E-value=1.2e-14  Score=138.57  Aligned_cols=100  Identities=22%  Similarity=0.270  Sum_probs=86.1

Q ss_pred             ccccccchhhhHHHHHHHHHh--------cCCcEEEecCcccccccceeeeCCccchhhhccccccccccccCceE--ec
Q psy16142         18 WHFLLYLLPWRWEPLLAGLRK--------KGGTVSISNLGMFGIKNFSAIINPPQACILAVGSLSQRLVREGNDRV--AL   87 (426)
Q Consensus        18 ~~~~l~~i~~e~~~L~~kar~--------~gGtfTIsn~G~~G~~~~tpIInppq~aIlgvg~~~~~p~v~~~~~i--~m   87 (426)
                      ..+++.+|++++++|+.++|+        +||||||||+|++|+.+++|||||||+||+++|++.++|++.++...  .+
T Consensus       116 ~~~~l~~i~~~~~~l~~~ar~~kL~~~e~~ggtftISnlG~~G~~~~tpIin~pq~aIl~vG~~~~~pv~~~g~i~~r~~  195 (233)
T 1scz_A          116 DTLGMADIEKKIKELAVKGRDGKLTVEDLTGGNFTITNGGVFGSLMSTPIINPPQSAILGMHAIKDRPMAVNGQVEILPM  195 (233)
T ss_dssp             GGCCHHHHHHHHHHHHHHTTTTCCCHHHHSCCSEEEEEGGGGTCCCCCCCCCTTCSEEEEEEEEEEEEEEETTEEEEEEE
T ss_pred             CCCCHHHHHHHHHHHHHHHHcCCCCccccCCCEEEEEeCCCCCccceEcccCCCCcEEEEccccEEEEEEECCEEEEEEE
Confidence            347999999999999999998        89999999999999999999999999999999999999998765322  33


Q ss_pred             cCCCCC-----cccceeeecccccCCccccCcchh
Q psy16142         88 PALSPT-----MEMGTIVSWAKKEGDKLNEGDLLA  117 (426)
Q Consensus        88 P~lg~s-----~d~g~i~~w~v~vGd~Ve~gd~L~  117 (426)
                      ..++.+     +||+.+.+|+....+.++.++.++
T Consensus       196 m~lsls~DHRviDGa~aa~Fl~~lk~~le~p~~ll  230 (233)
T 1scz_A          196 MYLALSYDHRLIDGRESVGFLVTIKELLEDPTRLL  230 (233)
T ss_dssp             EEEEEEEETTTCCHHHHHHHHHHHHHHHHCTTHHH
T ss_pred             EEEEEEEcceeechHHHHHHHHHHHHHHhCHHHHh
Confidence            345555     558899999999999999887554

>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1

Probab=99.42  E-value=1.3e-13  Score=109.30  Aligned_cols=75  Identities=27%  Similarity=0.388  Sum_probs=70.9

Q ss_pred             ceEeccCCCCCcccceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEcC
Q psy16142         83 DRVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVEN  160 (426)
Q Consensus        83 ~~i~mP~lg~s~d~g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~  160 (426)
                      ..+.||.++.+  .|.+.+|++++||.|++||.|+++|++|+.++|.||++|+|.++++++|+ .|..|++|+.|...
T Consensus         3 ~~i~~p~~g~~--~G~v~~~~v~~G~~V~~G~~l~~ie~~~~~~~i~Ap~~G~v~~~~v~~G~-~V~~G~~l~~i~~~   77 (80)
T 1qjo_A            3 KEVNVPDIGGD--EVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGD-KVKTGSLIMIFEVE   77 (80)
T ss_dssp             EEECCCCCSSS--CEEEEECCCCTTCEECBTSEEEEEESSSSCEEEEBSSCEEEEECCCCTTC-EECTTCCCEEEESC
T ss_pred             eEEECCCCCCC--CEEEEEEEcCCCCEECCCCEEEEEEcCCceEEEeCCCCEEEEEEecCCCC-EECCCCEEEEEEcc
Confidence            35789999998  78999999999999999999999999999999999999999999999999 89999999999764

>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A

Probab=99.38  E-value=4.4e-13  Score=106.07  Aligned_cols=73  Identities=19%  Similarity=0.326  Sum_probs=69.1

Q ss_pred             eEeccCCCCCcccceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEcC
Q psy16142         84 RVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVEN  160 (426)
Q Consensus        84 ~i~mP~lg~s~d~g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~  160 (426)
                      .+.||.++.+  + .+.+|++++||.|++||.|+++|++|+.++|.||++|+|.++++++|+ .|..|++|+.|...
T Consensus         3 ~i~~P~~g~~--~-~i~~~~v~~Gd~V~~G~~l~~le~~k~~~~i~Ap~~G~v~~~~v~~G~-~V~~g~~l~~i~~~   75 (79)
T 1iyu_A            3 IIRVPDIGGD--G-EVIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGD-KLKEGDAIIELEPA   75 (79)
T ss_dssp             EEECCCCSSE--E-EEEEECCCTTCBCCSSSEEEEEECSSCEEEEECSSSSEEEEESCCTTC-EEETTSEEEEEECC
T ss_pred             EEECCCCCCC--C-EEEEEecCCCCEEcCCCEEEEEEccceEEEEECCCCEEEEEEEeCCCC-EECCCCEEEEEecC
Confidence            5789999986  6 999999999999999999999999999999999999999999999999 89999999999764

>3b8k_A PDCE2;, dihydrolipoyllysine-residue acetyltransferase; central beta-sheet surrounded by five alpha-helices; 8.80A {Homo sapiens}

Probab=99.36  E-value=1.6e-13  Score=131.21  Aligned_cols=99  Identities=35%  Similarity=0.497  Sum_probs=83.3

Q ss_pred             cccccchhhhHHHHHHHHHh--------cCCcEEEecCcccccccceeeeCCccchhhhccccccccccc--cCceE--e
Q psy16142         19 HFLLYLLPWRWEPLLAGLRK--------KGGTVSISNLGMFGIKNFSAIINPPQACILAVGSLSQRLVRE--GNDRV--A   86 (426)
Q Consensus        19 ~~~l~~i~~e~~~L~~kar~--------~gGtfTIsn~G~~G~~~~tpIInppq~aIlgvg~~~~~p~v~--~~~~i--~   86 (426)
                      .+++.+|++++++|+.++|+        +||||||||+|++|.++|+||+||||++|+++|++.++|++.  ++...  .
T Consensus       123 ~~~l~~i~~~~~~l~~~ar~~kL~~~e~~ggtftISnlG~~g~~~ftpiin~pq~aIl~vG~~~~~pv~~~~~g~i~~r~  202 (239)
T 3b8k_A          123 IKGVETIANDVVSLATKAREGKLQPHEFQGGTFTISNLGMFGIKNFSAIINPPQACILAIGASEDKLVPADNEKGFDVAS  202 (239)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTTCCCGGGGCCCSEEEEECCSSCCSSCCCCCCTTSCCCCEECCCCCSCCCCCSSSSCCCCC
T ss_pred             CCCHHHHHHHHHHHHHHHHcCCCCccccCCCEEEEEcCCCCCceeEECcCCCCceEEEECcccEEEEEEEcCCCcEEEEE
Confidence            37999999999999999998        899999999999999999999999999999999999999883  44211  2


Q ss_pred             ccCCCCC-----cccceeeecccccCCccccCcchh
Q psy16142         87 LPALSPT-----MEMGTIVSWAKKEGDKLNEGDLLA  117 (426)
Q Consensus        87 mP~lg~s-----~d~g~i~~w~v~vGd~Ve~gd~L~  117 (426)
                      +..++.+     +||+.+.+|+....+.++.++.|+
T Consensus       203 ~m~lsls~DHRviDGa~aa~Fl~~lk~~le~p~~ll  238 (239)
T 3b8k_A          203 MMSVTLSCDHRVVDGAVGAQWLAEFRKYLEKPITML  238 (239)
T ss_dssp             CEEEEECCCCCSSCHHHHHHHHHHHHHHHHCTHHHH
T ss_pred             EEEEEEEEcceeechHHHHHHHHHHHHHHhCHHhhh
Confidence            3334444     558899999999999998876543

>3rqc_A Probable lipoamide acyltransferase; alpha beta fold; 4.01A {Thermoplasma acidophilum dsm 1728}

Probab=99.35  E-value=1.1e-13  Score=131.20  Aligned_cols=99  Identities=15%  Similarity=0.133  Sum_probs=83.3

Q ss_pred             ccccccchhhhHHHHHHHHHh--------cCCcEEEecCcccccccceeeeCCccchhhhccccccccccccCceEeccC
Q psy16142         18 WHFLLYLLPWRWEPLLAGLRK--------KGGTVSISNLGMFGIKNFSAIINPPQACILAVGSLSQRLVREGNDRVALPA   89 (426)
Q Consensus        18 ~~~~l~~i~~e~~~L~~kar~--------~gGtfTIsn~G~~G~~~~tpIInppq~aIlgvg~~~~~p~v~~~~~i~mP~   89 (426)
                      .++++.+|++++++|+.++|+        +||||||||+|++|+.+|+|||||||++|+++|++.++|+ -....+.+-.
T Consensus       115 ~~~sl~~i~~~~~~l~~~ar~~~L~~~e~~ggtftISnlG~~G~~~~tpiin~pq~aIl~vG~~~~~p~-r~~m~lsls~  193 (224)
T 3rqc_A          115 DRKSMVEISAEISDKASRARENKLQLDEVQDSTFTITNVGTIGGIMSTPIINYPEVAILGVHRILEREG-RKYMYLSLSC  193 (224)
T ss_dssp             GGSCHHHHHHHHHHHHHHHTTTCCCGGGSCCCSEEEEECTTTCCSEEECCCCTTBSEEEEECCCEEETT-EEECCEEEEE
T ss_pred             CCCCHHHHHHHHHHHHHHHHcCCCCccccCCCEEEEEcCCcCCccceEeccCCCCceEEEecccEEECC-ceEEEEEEEe
Confidence            348999999999999999998        8999999999999999999999999999999999998876 1112223334


Q ss_pred             CCCCcccceeeecccccCCccccCcchh
Q psy16142         90 LSPTMEMGTIVSWAKKEGDKLNEGDLLA  117 (426)
Q Consensus        90 lg~s~d~g~i~~w~v~vGd~Ve~gd~L~  117 (426)
                      -+.-+||+.+.+|+....+.++.++.|+
T Consensus       194 DHRviDGa~aa~Fl~~l~~~le~p~~ll  221 (224)
T 3rqc_A          194 DHRLIDGAVATRFIVDLKKVIEDPNAII  221 (224)
T ss_dssp             ETTTSCHHHHHHHHHHHHHHHTCTTTTT
T ss_pred             ccceecHHHHHHHHHHHHHHHhCHHHHh
Confidence            4455668999999999999999987664

>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A

Probab=99.34  E-value=8.3e-14  Score=143.62  Aligned_cols=100  Identities=24%  Similarity=0.353  Sum_probs=0.0

Q ss_pred             ccccccchhhhHHHHHHHHHh--------cCCcEEEecCcccccccceeeeCCccchhhhccccccccccccCceE--ec
Q psy16142         18 WHFLLYLLPWRWEPLLAGLRK--------KGGTVSISNLGMFGIKNFSAIINPPQACILAVGSLSQRLVREGNDRV--AL   87 (426)
Q Consensus        18 ~~~~l~~i~~e~~~L~~kar~--------~gGtfTIsn~G~~G~~~~tpIInppq~aIlgvg~~~~~p~v~~~~~i--~m   87 (426)
                      +.++|.+|++++++|+.++|+        +||||||||+|++|.++|+||||+||+||+++|++.++|++.++...  .|
T Consensus       311 ~~~sl~eia~~~~~l~~~ar~gkL~~~e~~ggtftISnlG~~G~~~ftpIin~pq~aIl~vG~i~~~pv~~~g~i~~r~~  390 (428)
T 3dva_I          311 DRKPIFALAQEINELAEKARDGKLTPGEMKGASCTITNIGSAGGQWFTPVINHPEVAILGIGRIAEKPIVRDGEIVAAPM  390 (428)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCCHHHHHHHHHHHHHHHHcCCCCccccCCCEEEEEcCCCCCccceEeecCCCCceEEEccccEEEEEEECCEEEEeee
Confidence            358999999999999999998        89999999999999999999999999999999999999998665432  45


Q ss_pred             cCCCCCcc-----cceeeecccccCCccccCcchh
Q psy16142         88 PALSPTME-----MGTIVSWAKKEGDKLNEGDLLA  117 (426)
Q Consensus        88 P~lg~s~d-----~g~i~~w~v~vGd~Ve~gd~L~  117 (426)
                      ..|++++|     |+.+.+|+..+.+.++.+..|+
T Consensus       391 m~lsls~DHRviDG~~aa~Fl~~lk~~Le~P~~ll  425 (428)
T 3dva_I          391 LALSLSFDHRMIDGATAQKALNHIKRLLSDPELLL  425 (428)
T ss_dssp             -----------------------------------
T ss_pred             EEEEEEecccccchHHHHHHHHHHHHHHhCHHHHh
Confidence            56777766     8899999999999999887654

>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1

Probab=99.33  E-value=2.6e-13  Score=107.85  Aligned_cols=76  Identities=25%  Similarity=0.398  Sum_probs=70.5

Q ss_pred             ceEeccCCCCCcccceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEcC
Q psy16142         83 DRVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVEN  160 (426)
Q Consensus        83 ~~i~mP~lg~s~d~g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~  160 (426)
                      ..+.||.++ +...|.+.+|++++||.|++||.|+++|++|+.++|.||++|+|.++++++|+ .|..|++|+.|...
T Consensus         3 ~~i~~p~~g-~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~-~v~~g~~l~~i~~~   78 (81)
T 1gjx_A            3 VELKVPDIG-GHENVDIIAVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGD-KISEGGLIVVVEAE   78 (81)
T ss_dssp             EECCCCCCS-SCSSEEEEEECCCSSCBCCSSCCCEEEECSSCEEEECCCCSSBBCCCCCCSSC-EECSSSCCCEECCS
T ss_pred             EEEEcCCCC-CCCcEEEEEEEcCCCCEECCCCEEEEEEeCCcEEEEECCCCEEEEEEecCCCC-EeCCCCEEEEEEec
Confidence            357899999 66778999999999999999999999999999999999999999999999999 89999999999653

>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}

Probab=99.27  E-value=2.3e-12  Score=103.48  Aligned_cols=71  Identities=28%  Similarity=0.419  Sum_probs=65.7

Q ss_pred             eEeccCCCCCcccceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEcCC
Q psy16142         84 RVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENE  161 (426)
Q Consensus        84 ~i~mP~lg~s~d~g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~  161 (426)
                      .+.+|.+      |.+.+|++++||.|++||.|+++|++|+..+|.||++|+|.++++++|+ .|..|++|+.|...+
T Consensus         4 ~i~~p~~------G~v~~~~v~~Gd~V~~G~~L~~ie~~k~~~~i~Ap~~G~V~~~~v~~G~-~V~~G~~l~~i~~~~   74 (85)
T 2k7v_A            4 EVNVPDI------VEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGD-KVKTGSLIMIFEVEG   74 (85)
T ss_dssp             CCCCCSC------CCCCSCCCSSSCCCCCSSSCCCCSCCCSEEEEECSSCBCCCEECSCTTC-CBCTTSEEEEEECCS
T ss_pred             EEECCCe------EEEEEEEcCCCCEEcCCCEEEEEEccccEEEEECCCCEEEEEEEeCCCC-EECCCCEEEEEEcCC
Confidence            4567765      7999999999999999999999999999999999999999999999999 899999999997643

>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}

Probab=99.14  E-value=2e-11  Score=97.99  Aligned_cols=63  Identities=22%  Similarity=0.371  Sum_probs=60.0

Q ss_pred             cceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEcC
Q psy16142         96 MGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVEN  160 (426)
Q Consensus        96 ~g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~  160 (426)
                      .|.+.+|++++||.|++||.|++||+||+.++|.||++|+|.+++ ++|+ .|.+|++|+.|...
T Consensus        13 ~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~-~~G~-~V~~G~~l~~i~~~   75 (84)
T 2kcc_A           13 AGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVKYIK-RPGA-VLEAGCVVARLELD   75 (84)
T ss_dssp             SCCEEEESSCTTEEECTTCEEEEEECSSCEEEEECSSSEEEEECS-CTTC-CCCTTCCCEEEECS
T ss_pred             CEEEEEEECCCCCEECCCCEEEEEEecceeEEEECCCCEEEEEEc-CCCC-EECCCCEEEEEeCC
Confidence            388999999999999999999999999999999999999999999 9999 89999999999754

>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}

Probab=99.13  E-value=4.5e-11  Score=129.96  Aligned_cols=61  Identities=26%  Similarity=0.383  Sum_probs=59.6

Q ss_pred             ceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEE
Q psy16142         97 GTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIV  158 (426)
Q Consensus        97 g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~  158 (426)
                      |++.+|++++||.|++||+|++||+|||+++|+||.+|+|.++++++|+ .|.+|++|++|+
T Consensus       621 G~v~~~~v~~Gd~V~~g~~l~~iEamKm~~~i~ap~~G~v~~i~~~~G~-~v~~g~~l~~i~  681 (681)
T 3n6r_A          621 GLIVKVDVEVGQEVQEGQALCTIEAMKMENILRAEKKGVVAKINASAGN-SLAVDDVIMEFE  681 (681)
T ss_dssp             EEEEEECCCTTCEECTTCEEEEEECSSCEEEEECSSSEEEEEECCCTTC-EECTTCEEEEEC
T ss_pred             EEEEEEEeCCCCEEcCCCEEEEEEecCceeEEECCCCeEEEEEEeCCcC-EeCCCCEEEEEC
Confidence            9999999999999999999999999999999999999999999999999 899999999984

>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*

Probab=99.09  E-value=7.1e-11  Score=91.17  Aligned_cols=63  Identities=19%  Similarity=0.294  Sum_probs=60.2

Q ss_pred             cceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEc
Q psy16142         96 MGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVE  159 (426)
Q Consensus        96 ~g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~  159 (426)
                      .|.+.+|++++||.|++||.|+++|++|+..+|.||.+|+|.++++++|+ .|..|++|+.|..
T Consensus         7 ~G~v~~~~v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~v~~G~-~V~~G~~l~~i~~   69 (72)
T 1z6h_A            7 AGNLWKVHVKAGDQIEKGQEVAILESMKMEIPIVADRSGIVKEVKKKEGD-FVNEGDVLLELSN   69 (72)
T ss_dssp             SEEEEEECCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEESSCTTC-EECTTCEEEEEGG
T ss_pred             cEEEEEEEcCCcCEECCCCEEEEEECCccEEEEECCCCcEEEEEecCCCC-EECCCCEEEEEeC
Confidence            38899999999999999999999999999999999999999999999999 8999999999864

>2eq9_C Pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase E2 component; protein-protein complex, oxidoreductase; HET: FAD; 2.09A {Thermus thermophilus}

Probab=99.08  E-value=6.4e-11  Score=82.34  Aligned_cols=38  Identities=32%  Similarity=0.583  Sum_probs=35.9

Q ss_pred             ccChHHHHHHHHcCCCCcCccCCCCCCCcccchhhhhhh
Q psy16142        222 YASPLAKRLAAEKGLDLSSIGAGSGLFGSITSADLSKAS  260 (426)
Q Consensus       222 ~asP~aR~lA~e~gIDl~~v~~gtG~~GrI~~~DV~~~~  260 (426)
                      .+||+||++|+|+|||++.| .|||++|||+++||+++.
T Consensus         2 ~asP~ar~la~e~gidl~~v-~gtG~~gri~k~Dv~~~~   39 (41)
T 2eq9_C            2 LAVPAARKLARELGIPIEEV-PGSGPLGRVRVEDVRAYA   39 (41)
T ss_dssp             CBCHHHHHHHHHTTCCGGGS-CCCSTTCCBCHHHHHHHH
T ss_pred             CCChHHHHHHHHcCCChhhc-CCCCCCCcccHHHHHHHh
Confidence            57999999999999999999 999999999999999864

>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A

Probab=99.06  E-value=7.6e-11  Score=93.22  Aligned_cols=59  Identities=27%  Similarity=0.321  Sum_probs=55.8

Q ss_pred             eeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEE
Q psy16142         99 IVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIV  158 (426)
Q Consensus        99 i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~  158 (426)
                      +.+|++++||.|++||.|+++|++|+.++|.||++|+|.++++++|+ .|..|++|+.|+
T Consensus        22 ~~~~~v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~-~V~~G~~L~~i~   80 (80)
T 1bdo_A           22 DAKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQ-PVEFDEPLVVIE   80 (80)
T ss_dssp             TSCCSCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEECSCTTC-EECTTCEEEEEC
T ss_pred             CcccccCCcCEECCCCEEEEEEeccEEEEEECCCCEEEEEEEcCCCC-EECCCCEEEEEC
Confidence            34689999999999999999999999999999999999999999999 899999999873

>2eq7_C 2-oxoglutarate dehydrogenase E2 component; protein-protein complex, oxidoreductase; HET: FAD NAD; 1.80A {Thermus thermophilus}

Probab=99.05  E-value=9e-11  Score=81.13  Aligned_cols=37  Identities=38%  Similarity=0.577  Sum_probs=34.7

Q ss_pred             cChHHHHHHHHcCCCCcCccCCCCCCCcccchhhhhhh
Q psy16142        223 ASPLAKRLAAEKGLDLSSIGAGSGLFGSITSADLSKAS  260 (426)
Q Consensus       223 asP~aR~lA~e~gIDl~~v~~gtG~~GrI~~~DV~~~~  260 (426)
                      +||++|++|+++|||++.| .|||++|||+++||+++.
T Consensus         2 asP~ar~la~e~gidl~~v-~gtG~~gri~k~Dv~~~~   38 (40)
T 2eq7_C            2 AMPAAERLMQEKGVSPAEV-QGTGLGGRILKEDVMRHL   38 (40)
T ss_dssp             CCHHHHHHHHHTTCCTTTS-CCCSSSSCCCHHHHTTC-
T ss_pred             CCcHHHHHHHHhCCChhhc-CCCCCCCcccHHHHHHHh
Confidence            6999999999999999999 999999999999999763

>3rnm_E Lipoamide acyltransferase component of branched-C alpha-keto acid dehydrogenase complex,...; protein-protein interaction, redox protein; HET: FAD NHE; 2.40A {Homo sapiens} SCOP: a.9.1.0 PDB: 1zwv_A

Probab=99.05  E-value=6.2e-11  Score=88.57  Aligned_cols=41  Identities=32%  Similarity=0.482  Sum_probs=37.4

Q ss_pred             CccccChHHHHHHHHcCCCCcCccCCCCCCCcccchhhhhhh
Q psy16142        219 TRVYASPLAKRLAAEKGLDLSSIGAGSGLFGSITSADLSKAS  260 (426)
Q Consensus       219 ~~~~asP~aR~lA~e~gIDl~~v~~gtG~~GrI~~~DV~~~~  260 (426)
                      .++.+||+||+||+++||||+.| .|||++|||+++||+++.
T Consensus         6 ~~v~aSPaaRrlA~e~gIdl~~V-~GTG~~GRItk~DV~~~~   46 (58)
T 3rnm_E            6 RKTLATPAVRNLAMENNIKLSEV-VGSGKDGRILKEDILNYL   46 (58)
T ss_dssp             --CCCCHHHHHHHHHTTCCGGGC-CCCSGGGCCCHHHHHHHH
T ss_pred             CCcCcCHHHHHHHHHcCCCHHHC-CCCCCCCceeHHHHHHHH
Confidence            45679999999999999999999 999999999999999874

>2eq8_C Pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase E2 component; protein-protein complex, oxidoreductase; HET: FAD; 1.94A {Thermus thermophilus}

Probab=99.04  E-value=9.5e-11  Score=81.02  Aligned_cols=37  Identities=46%  Similarity=0.770  Sum_probs=35.2

Q ss_pred             cChHHHHHHHHcCCCCcCccCCCCCCCcccchhhhhhh
Q psy16142        223 ASPLAKRLAAEKGLDLSSIGAGSGLFGSITSADLSKAS  260 (426)
Q Consensus       223 asP~aR~lA~e~gIDl~~v~~gtG~~GrI~~~DV~~~~  260 (426)
                      +||+||++|+++|||++.| .|||++|||+++||+++.
T Consensus         2 asP~ar~la~e~gidl~~v-~gtG~~gri~k~Dv~~~~   38 (40)
T 2eq8_C            2 AAPSIRRLARELGVDLTRL-RGTGLAGRITEEDVRRAA   38 (40)
T ss_dssp             CCHHHHHHHHHHTCCGGGC-CCCSTTSCCCHHHHHHHH
T ss_pred             CChHHHHHHHHhCCChhhc-CCCCCCCceeHHHHHHHh
Confidence            6999999999999999999 999999999999999763

>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}

Probab=99.04  E-value=2.5e-11  Score=137.78  Aligned_cols=97  Identities=19%  Similarity=0.203  Sum_probs=71.2

Q ss_pred             ccccccchhhhHHHHHHHHHh--------cCCcEEEecCcccccccceeeeCCccchhhhcccccccccccc------Cc
Q psy16142         18 WHFLLYLLPWRWEPLLAGLRK--------KGGTVSISNLGMFGIKNFSAIINPPQACILAVGSLSQRLVREG------ND   83 (426)
Q Consensus        18 ~~~~l~~i~~e~~~L~~kar~--------~gGtfTIsn~G~~G~~~~tpIInppq~aIlgvg~~~~~p~v~~------~~   83 (426)
                      ..++|.+|++++++|+.+||+        +||||||||+|++|+.+++|||||||+||+++|++.++|++.+      +.
T Consensus       106 ~~~sl~ei~~~i~~l~~rAr~gkL~~~d~~ggTftISNlG~~G~~~~tPIinppq~aIL~vG~i~~~pv~~~~~~~~~g~  185 (1113)
T 2xt6_A          106 ETMRFGQFIAAYEDIVRRARDGKLTAEDFSGVTISLTNPGTLGTVHSVPRLMQGQGAIIGAGAMEYPAEFQGASEERIAD  185 (1113)
T ss_dssp             GGCCHHHHHHHHHHHHHHHTTTCCCGGGTSCCSEEEECC------------CTTCSEEEEECCCBCCTTSTTCCHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHhcCCCCccccCCCEEEEeCCCcCCCcceECCCCCCCceEEEcCccEEEeEEcCCCcccCCc
Confidence            359999999999999999998        8999999999999999999999999999999999999988754      21


Q ss_pred             --eEeccCCCCC-----cccceeeecccccCCccccCc
Q psy16142         84 --RVALPALSPT-----MEMGTIVSWAKKEGDKLNEGD  114 (426)
Q Consensus        84 --~i~mP~lg~s-----~d~g~i~~w~v~vGd~Ve~gd  114 (426)
                        ...+..|+.+     +||+...+|+..+.+.++.++
T Consensus       186 i~~r~~m~lsls~DHRviDGa~aa~FL~~lk~~Le~p~  223 (1113)
T 2xt6_A          186 LGIGKLITLTSTYDHRIIQGAESGDFLRTIHQLLLDDD  223 (1113)
T ss_dssp             HTCCCEEEEEEEEETTTCCHHHHHHHHHHHHHHTTCHH
T ss_pred             eeEeeeeEEEEEECcceechHHHHHHHHHHHHHHhCcH
Confidence              1233345555     558899999999999999865

>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.03  E-value=1.5e-10  Score=95.83  Aligned_cols=63  Identities=21%  Similarity=0.374  Sum_probs=59.9

Q ss_pred             cceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEcC
Q psy16142         96 MGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVEN  160 (426)
Q Consensus        96 ~g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~  160 (426)
                      .|.+.+|++++||.|++||.|+++|+||+..+|.||++|+|. +++++|+ .|..|++|+.|...
T Consensus        25 ~G~v~~~~v~~Gd~V~~Gq~L~~le~~k~~~~i~Ap~~G~V~-~~v~~G~-~V~~G~~l~~i~~~   87 (100)
T 2dn8_A           25 AGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVK-YIKRPGA-VLEAGCVVARLELD   87 (100)
T ss_dssp             CEEEEEESSCTTEEECTTCEEEEEEETTEEEEEECSSSEEEE-ECSCTTC-EECSSCEEEEECCS
T ss_pred             CEEEEEEEcCCcCEECCCCEEEEEEecceEEEEEcCCCEEEE-EEeCCCC-EECCCCEEEEEEcC
Confidence            389999999999999999999999999999999999999999 9999999 89999999999653

>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}

Probab=99.00  E-value=7.3e-11  Score=96.67  Aligned_cols=62  Identities=26%  Similarity=0.366  Sum_probs=25.1

Q ss_pred             cceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEE
Q psy16142         96 MGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIV  158 (426)
Q Consensus        96 ~g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~  158 (426)
                      .|.+.+|++++||.|++||.|+++|++|+..+|.||++|+|.++.+++|+ .|..|++|+.|+
T Consensus        33 ~G~v~~~~v~~Gd~V~~Gq~L~~ie~~k~~~~i~AP~~G~V~~~~v~~G~-~V~~G~~L~~ie   94 (94)
T 2jku_A           33 PGVVVAVSVKPGDAVAEGQEICVIEAMKMQNSMTAGKTGTVKSVHCQAGD-TVGEGDLLVELE   94 (94)
T ss_dssp             SCEEEEECCCTTCCCCTTCCCEEEEC-------------------------------------
T ss_pred             CEEEEEEECCCCCEEcCCCEEEEEecccccEEEECCCCEEEEEEcCCCcC-EECCCCEEEEEC
Confidence            58999999999999999999999999999999999999999999999999 899999999873

>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A

Probab=98.96  E-value=5.5e-10  Score=87.31  Aligned_cols=62  Identities=27%  Similarity=0.376  Sum_probs=59.2

Q ss_pred             cceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEE
Q psy16142         96 MGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIV  158 (426)
Q Consensus        96 ~g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~  158 (426)
                      .|.+.+|++++|+.|++||.|++++++|+..+|.||.+|+|.++.+++|+ .|..|++|+.|+
T Consensus        16 ~G~v~~~~v~~G~~V~~G~~L~~l~~~~~~~~i~Ap~~G~v~~~~~~~G~-~v~~G~~l~~i~   77 (77)
T 1dcz_A           16 AGTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERD-AVQGGQGLIKIG   77 (77)
T ss_dssp             SCEEEEECCCTTCEECTTSEEEEEEETTEEEEEECSSSEEEEEECCCTTC-BCCBTSEEEEEC
T ss_pred             CEEEEEEEcCCcCEEcCCCEEEEEEccceeEEEECCCCEEEEEEecCCcC-EECCCCEEEEEC
Confidence            38899999999999999999999999999999999999999999999999 899999999873

>1w85_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: a.9.1.1 PDB: 1w88_I* 1w4g_A 1w4e_A 1w4f_A 2pdd_A 2pde_A 1ebd_C*

Probab=98.95  E-value=3.1e-10  Score=82.01  Aligned_cols=40  Identities=33%  Similarity=0.547  Sum_probs=37.4

Q ss_pred             ccccChHHHHHHHHcCCCCcCccCCCCCCCcccchhhhhhh
Q psy16142        220 RVYASPLAKRLAAEKGLDLSSIGAGSGLFGSITSADLSKAS  260 (426)
Q Consensus       220 ~~~asP~aR~lA~e~gIDl~~v~~gtG~~GrI~~~DV~~~~  260 (426)
                      ++.+||++|+||+++||||+.| .|||++|||+++||+++.
T Consensus         6 ~~~asP~ar~la~e~gidl~~v-~gtG~~Gri~k~Dv~~~~   45 (49)
T 1w85_I            6 RVIAMPSVRKYAREKGVDIRLV-QGTGKNGRVLKEDIDAFL   45 (49)
T ss_dssp             CCCCCHHHHHHHHHTTCCTTTS-CCCSGGGCCCHHHHHHHH
T ss_pred             cccCChHHHHHHHHcCCCcccc-CCCCCCCcccHHHHHHHH
Confidence            4568999999999999999999 999999999999999875

>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A

Probab=98.95  E-value=6.6e-10  Score=85.93  Aligned_cols=62  Identities=24%  Similarity=0.382  Sum_probs=59.1

Q ss_pred             cceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEE
Q psy16142         96 MGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIV  158 (426)
Q Consensus        96 ~g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~  158 (426)
                      .|.+.+|++++||.|++||.|++++++|+..+|.||.+|+|.++.+++|+ .|..|++|+.|+
T Consensus        13 ~G~v~~~~v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~-~v~~g~~l~~i~   74 (74)
T 2d5d_A           13 PGKVLRVLVRVGDRVRVGQGLLVLEAMKMENEIPSPRDGVVKRILVKEGE-AVDTGQPLIELG   74 (74)
T ss_dssp             CEEEEEECCCTTCEECTTCEEEEEEETTEEEEEECSSSEEEEEECCCTTC-EECTTCEEEEEC
T ss_pred             CEEEEEEEcCCCCEeCCCCEEEEEecccceEEEeCCCCEEEEEEEcCCcC-EECCCCEEEEEC
Confidence            38899999999999999999999999999999999999999999999999 899999999873

>1bal_A Dihydrolipoamide succinyltransferase; glycolysis; NMR {Escherichia coli} SCOP: a.9.1.1 PDB: 1bbl_A 1w4h_A 2wav_A 2wxc_A 2btg_A 2bth_A 2cyu_A

Probab=98.95  E-value=3.5e-10  Score=82.41  Aligned_cols=40  Identities=40%  Similarity=0.527  Sum_probs=36.9

Q ss_pred             ccccChHHHHHHHHcCCCCcCccCCCCCCCcccchhhhhhh
Q psy16142        220 RVYASPLAKRLAAEKGLDLSSIGAGSGLFGSITSADLSKAS  260 (426)
Q Consensus       220 ~~~asP~aR~lA~e~gIDl~~v~~gtG~~GrI~~~DV~~~~  260 (426)
                      ...+||++|+||+++||||+.| .|||++|||+++||+++.
T Consensus         9 ~~~asP~aR~lA~e~gidl~~V-~gtG~~GrI~k~DV~~~~   48 (51)
T 1bal_A            9 NDALSPAIRRLLAEHNLDASAI-KGTGVGGRLTREDVEKHL   48 (51)
T ss_dssp             SCCCCGGGTTHHHHTTCCTTSS-CCCSTTSCCCHHHHTTTS
T ss_pred             CCCCChHHHHHHHHcCCCcccc-CCCCCCCcccHHHHHHHh
Confidence            3467999999999999999999 999999999999999764

>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}

Probab=98.91  E-value=8.8e-10  Score=91.01  Aligned_cols=64  Identities=27%  Similarity=0.359  Sum_probs=61.1

Q ss_pred             ceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEcCC
Q psy16142         97 GTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENE  161 (426)
Q Consensus        97 g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~  161 (426)
                      |.+.+|++++||.|++||+|++||++|+..+|.||++|+|.++++++|+ .|..|++|+.|...+
T Consensus        23 G~v~~~~v~~Gd~V~~Gq~L~~ie~~~~~~~i~AP~~G~V~~~~v~~G~-~V~~G~~L~~i~~~~   86 (99)
T 2ejm_A           23 GTIEKVFVKAGDKVKAGDSLMVMIAMKMEHTIKSPKDGTVKKVFYREGA-QANRHTPLVEFEEEE   86 (99)
T ss_dssp             EEEEEECCCTTEEECSSCEEEEEESSSSEEEEECSSCEEEEEESCCTTE-EECTTCBCEEECCCC
T ss_pred             EEEEEEECCCCCEECCCCEEEEEEccceeEEEECCCCeEEEEEEcCCCC-EECCCCEEEEEECCC
Confidence            8899999999999999999999999999999999999999999999999 899999999997643

>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}

Probab=98.87  E-value=9.4e-10  Score=126.20  Aligned_cols=60  Identities=32%  Similarity=0.385  Sum_probs=59.0

Q ss_pred             ceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEE
Q psy16142         97 GTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCII  157 (426)
Q Consensus        97 g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i  157 (426)
                      |++.+|++++||.|++||.|++||+|||+++|+||++|+|.+|++++|+ .|.+|++|++|
T Consensus      1176 G~v~~~~v~~Gd~V~~g~~l~~iEamK~~~~v~ap~~G~v~~i~v~~G~-~V~~G~~l~~i 1235 (1236)
T 3va7_A         1176 GRFWKPVAAVGDHVEAGDGVIIIEAMKTEMVVGATKSGKVYKILHKNGD-MVEAGDLVAVI 1235 (1236)
T ss_dssp             EEEEEESSCTTCEECSSCEEEEEEETTEEEEEECSSCEEEEEECCCTTC-EECTTCEEEEE
T ss_pred             EEEEEEEcCCCCEECCCCEEEEEEecCcceeEecCCCeEEEEEEeCCcC-EeCCCCEEEEe
Confidence            8999999999999999999999999999999999999999999999999 89999999987

>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*

Probab=98.85  E-value=1.5e-09  Score=123.97  Aligned_cols=63  Identities=19%  Similarity=0.332  Sum_probs=60.0

Q ss_pred             ceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEcC
Q psy16142         97 GTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVEN  160 (426)
Q Consensus        97 g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~  160 (426)
                      |.|.+|++++||.|++||+|++||+|||+++|+||.+|+|.++++++|+ .|.+|++|++|+.+
T Consensus      1086 G~v~~~~v~~Gd~V~~G~~l~~ieamK~~~~i~ap~~G~v~~i~v~~G~-~V~~g~~l~~i~~~ 1148 (1150)
T 3hbl_A         1086 GSVTEVKVSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVNNGD-TIATGDLLIEIEKA 1148 (1150)
T ss_dssp             EEEEEECCCTTCEECTTCEEEEEESSSCEEEEECSSSEEEEEECCCTTC-EECTTBEEEEEC--
T ss_pred             EEEEEEEeCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCCC-EeCCCCEEEEEecC
Confidence            8999999999999999999999999999999999999999999999999 89999999999653

>2coo_A Lipoamide acyltransferase component of branched- chain alpha-keto acid dehydrogenase...; E3_binding domain; NMR {Homo sapiens}

Probab=98.83  E-value=2.7e-09  Score=82.75  Aligned_cols=40  Identities=35%  Similarity=0.532  Sum_probs=37.5

Q ss_pred             ccccChHHHHHHHHcCCCCcCccCCCCCCCcccchhhhhhh
Q psy16142        220 RVYASPLAKRLAAEKGLDLSSIGAGSGLFGSITSADLSKAS  260 (426)
Q Consensus       220 ~~~asP~aR~lA~e~gIDl~~v~~gtG~~GrI~~~DV~~~~  260 (426)
                      ++.+||+||+||+++||||+.| .|||++|||+++||+++.
T Consensus        15 ~~~aSPaaRklA~e~gidl~~V-~GTG~~GRItk~DV~~~~   54 (70)
T 2coo_A           15 KTLATPAVRRLAMENNIKLSEV-VGSGKDGRILKEDILNYL   54 (70)
T ss_dssp             SCCSCHHHHHHHHHHTCCGGGS-CCCSTTSCCCHHHHHHHH
T ss_pred             ccccCcHHHHHHHHhCCCcccc-CCCCCCCceeHHHHHHHH
Confidence            4568999999999999999999 999999999999999874

>2f60_K Pyruvate dehydrogenase protein X component; protein-binding protein, E3BD, protein binding; 1.55A {Homo sapiens} PDB: 2f5z_K

Probab=98.83  E-value=9e-10  Score=83.97  Aligned_cols=40  Identities=30%  Similarity=0.331  Sum_probs=37.5

Q ss_pred             ccccChHHHHHHHHcCCCCcCccCCCCCCCcccchhhhhhh
Q psy16142        220 RVYASPLAKRLAAEKGLDLSSIGAGSGLFGSITSADLSKAS  260 (426)
Q Consensus       220 ~~~asP~aR~lA~e~gIDl~~v~~gtG~~GrI~~~DV~~~~  260 (426)
                      ++.+||+||++|+++||||+.| .|||++|||+++||+++.
T Consensus         9 ~~~asPaaRklA~e~gidl~~V-~GTG~~GRItk~DV~~~~   48 (64)
T 2f60_K            9 RFRLSPAARNILEKHSLDASQG-TATGPRGIFTKEDALKLV   48 (64)
T ss_dssp             HHHBCHHHHHHHHHTTCCGGGS-CCCSGGGCBCHHHHHHHH
T ss_pred             CCCCCcHHHHHHHHcCCChhhc-CCCCCCCcccHHHHHHHH
Confidence            4568999999999999999999 999999999999999874

>1w4i_A Pyruvate dehydrogenase E2; transferase, peripheral-subunit binding domain, ultrafast folding, homologues,; NMR {Pyrobaculum aerophilum} PDB: 1w4j_A 1w4k_A

Probab=98.81  E-value=1.7e-09  Score=82.00  Aligned_cols=40  Identities=45%  Similarity=0.633  Sum_probs=37.5

Q ss_pred             ccccChHHHHHHHHcCCCCcCccCCCCCCCcccchhhhhhh
Q psy16142        220 RVYASPLAKRLAAEKGLDLSSIGAGSGLFGSITSADLSKAS  260 (426)
Q Consensus       220 ~~~asP~aR~lA~e~gIDl~~v~~gtG~~GrI~~~DV~~~~  260 (426)
                      +..+||++|+||+++||||+.| .|||++|||+++||+++.
T Consensus         4 ~~~asPaaRklA~e~gidl~~V-~gtG~~GrItk~DV~~~~   43 (62)
T 1w4i_A            4 EVAAMPAARRLAKELGIDLSKV-KGTGPGGVITVEDVKRYA   43 (62)
T ss_dssp             SSEECHHHHHHHHHHTCCGGGS-CCCSTTSEECHHHHHHHH
T ss_pred             cccCChHHHHHHHHhCCChhhc-CCCCCCCcccHHHHHHHH
Confidence            3568999999999999999999 999999999999999974

>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A

Probab=98.51  E-value=1.6e-08  Score=110.05  Aligned_cols=60  Identities=22%  Similarity=0.302  Sum_probs=58.6

Q ss_pred             ceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEE
Q psy16142         97 GTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCII  157 (426)
Q Consensus        97 g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i  157 (426)
                      |++.+|++++||.|++||+|++||+|||+++|.||.+|+|.++++++|+ .|..|++|++|
T Consensus       658 G~V~~v~V~~Gd~V~~Gq~L~~iEamKme~~I~Ap~~G~V~~i~v~~G~-~V~~G~~L~~i  717 (718)
T 3bg3_A          658 GKVIDIKVVAGAKVAKGQPLCVLSAMKMETVVTSPMEGTVRKVHVTKDM-TLEGDDLILEI  717 (718)
T ss_dssp             EEEEEECSCTTCCBCTTCCCEEEESSSCEEEECCCCCBCBCCCCCCSEE-EECSSCEEECB
T ss_pred             eEEEEEEeCCCCeeCCCCEEEEEecccceeEEecCCCeEEEEEecCCCC-EeCCCCEEEEe
Confidence            8999999999999999999999999999999999999999999999999 89999999876

>1zko_A Glycine cleavage system H protein; TM0212, structural genomi center for structural genomics, JCSG, protein structure INI PSI; HET: MSE; 1.65A {Thermotoga maritima} PDB: 2ka7_A

Probab=98.48  E-value=7.6e-08  Score=84.04  Aligned_cols=57  Identities=19%  Similarity=0.322  Sum_probs=53.1

Q ss_pred             cccCCccccCcchhhhhcccccceeecCCCeEEEEE---eecCCCcccc---CCc-EEEEEEcCC
Q psy16142        104 KKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKI---LVPAGSKDVP---IGK-LVCIIVENE  161 (426)
Q Consensus       104 v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i---~v~~G~~~v~---vG~-~l~~i~~~~  161 (426)
                      .++|+.|++||.|++||+||+.++|.||.+|+|.++   +++.|+ .|.   .|+ .|+.|...+
T Consensus        53 p~vGd~V~~Gd~l~~VEs~K~~~eI~aPvsG~V~eiN~~l~~~p~-~Vn~dp~g~GwL~~i~~~~  116 (136)
T 1zko_A           53 PEVGREVKKGEVVASIESVKAAADVYAPLSGKIVEVNEKLDTEPE-LINKDPEGEGWLFKMEISD  116 (136)
T ss_dssp             CCTTCEECTTCEEEEEEESSCEEEEECSSCEEEEEECGGGGTCTT-HHHHCTTTTTCCEEEEESC
T ss_pred             cCCCCEEeCCCEEEEEEEccEeEEEecCCCeEEEEEehhhccCcc-CcccCCCCCeEEEEEEECC
Confidence            499999999999999999999999999999999999   889998 898   898 999998654

>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*

Probab=98.46  E-value=4.1e-08  Score=112.39  Aligned_cols=61  Identities=28%  Similarity=0.460  Sum_probs=52.9

Q ss_pred             ceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEE
Q psy16142         97 GTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIV  158 (426)
Q Consensus        97 g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~  158 (426)
                      |++.+|++++||.|++||+|++||+|||+++|.||.+|+|.++++++|+ .|..|++|++|+
T Consensus      1104 G~v~~~~v~~Gd~V~~G~~l~~iEamKme~~i~Ap~~G~V~~i~v~~G~-~V~~g~~l~~i~ 1164 (1165)
T 2qf7_A         1104 GVISRVFVSSGQAVNAGDVLVSIEAMKMETAIHAEKDGTIAEVLVKAGD-QIDAKDLLAVYG 1164 (1165)
T ss_dssp             EEEEEECCSSCCCC---CEEEEEEC---CEEEECCSSCCCCEECCCSSC-EECTTBEEEEC-
T ss_pred             eEEEEEEcCCcCEeCCCCEEEEEEcccceEEEEcCCCEEEEEEEeCCCC-EECCCCEEEEec
Confidence            8999999999999999999999999999999999999999999999999 899999999874

>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*

Probab=98.35  E-value=1.8e-07  Score=78.81  Aligned_cols=67  Identities=28%  Similarity=0.366  Sum_probs=60.6

Q ss_pred             cceeeecccccCCccccCcchhhhhcccccc-----------------------------eeecCCCeEEEEEeecCCCc
Q psy16142         96 MGTIVSWAKKEGDKLNEGDLLAEIETDKATM-----------------------------GFETPEEGYLAKILVPAGSK  146 (426)
Q Consensus        96 ~g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~-----------------------------ei~a~~~G~v~~i~v~~G~~  146 (426)
                      .|.|.+|++++||.|++||+|+++++.++..                             .|.||.+|+|.++.+++|+ 
T Consensus         9 ~G~V~~v~v~~G~~V~~Gq~L~~ld~~~a~~~~~r~~~L~~~~~~s~~~~~~~~~~~~~~~i~AP~~G~V~~~~~~~G~-   87 (116)
T 2k32_A            9 SGVIVNKLFKAGDKVKKGQTLFIIEQDQASKDFNRSKALFSQSAISQKEYDSSLATLDHTEIKAPFDGTIGDALVNIGD-   87 (116)
T ss_dssp             CEEEEEECSCTTSEECTTCEEEEEECTTTSHHHHHHHHHTGGGCCSTTTTTHHHHTTTEEEEECSSSEEECCCSCCTTC-
T ss_pred             CEEEEEEECCCcCEECCCCEEEEECHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHhhcCCEEEcCCCEEEEEEECCCCC-
Confidence            4899999999999999999999999886664                             8999999999999999999 


Q ss_pred             cccCC-cEEEEEEcCCcc
Q psy16142        147 DVPIG-KLVCIIVENESD  163 (426)
Q Consensus       147 ~v~vG-~~l~~i~~~~~~  163 (426)
                      .|..| ++|+.|...+.-
T Consensus        88 ~v~~g~~~l~~i~~~~~~  105 (116)
T 2k32_A           88 YVSASTTELVRVTNLNPI  105 (116)
T ss_dssp             EECTTTSCCEEEECSCTH
T ss_pred             EEcCCCcEEEEEECCCeE
Confidence            89999 999999876543

>1q23_A Chloramphenicol acetyltransferase; CAT I, trimer, fusidic acid; HET: FUA; 2.18A {Escherichia coli} SCOP: c.43.1.1 PDB: 1noc_B 1pd5_A* 3u9b_A 3u9f_A*

Probab=98.24  E-value=1.2e-07  Score=89.23  Aligned_cols=91  Identities=11%  Similarity=0.051  Sum_probs=68.7

Q ss_pred             ccccccccchhhhHHHHHHHHHh---------cCCcEEEecCcccccccceeeeCCcc------chhhhccccccccccc
Q psy16142         16 AEWHFLLYLLPWRWEPLLAGLRK---------KGGTVSISNLGMFGIKNFSAIINPPQ------ACILAVGSLSQRLVRE   80 (426)
Q Consensus        16 ~~~~~~l~~i~~e~~~L~~kar~---------~gGtfTIsn~G~~G~~~~tpIInppq------~aIlgvg~~~~~p~v~   80 (426)
                      ..+..++.+|.+++++|+.+||+         .||||||||+|++   .|++++++|+      ++|+++|++.++    
T Consensus       107 ~~~~~~l~~i~~~~~~l~~~ar~~~kL~~~~~~ggtftISnlG~~---~ft~i~~~~~~~~~~~~pIi~~G~~~~~----  179 (219)
T 1q23_A          107 SEYHDDFRQFLHIYSQDVACYGENLAYFPKGFIENMFFVSANPWV---SFTSFDLNVANMDNFFAPVFTMGKYYTQ----  179 (219)
T ss_dssp             CCCCSSHHHHHHHHHHHHHHHTTCCSSSTTCCCSSEEEEEECTTC---CCSEEEEEESCCTTCCSCEEEECCCEEE----
T ss_pred             ecCCCCHHHHHHHHHHHHHHHHccCCCCCccccCCEEEEEcCccc---cccccccCCCCCccceeEEEecccEEEE----
Confidence            34567999999999999999997         2799999999997   5677777776      599999998765    


Q ss_pred             cCc---eEeccCCCCCcccceeeecccccCCccccC
Q psy16142         81 GND---RVALPALSPTMEMGTIVSWAKKEGDKLNEG  113 (426)
Q Consensus        81 ~~~---~i~mP~lg~s~d~g~i~~w~v~vGd~Ve~g  113 (426)
                      ++.   .+.+-.-+.-+||+.+.+|+....+.++.+
T Consensus       180 ~~r~~m~lsls~DHRvvDG~~aa~Fl~~lk~~le~~  215 (219)
T 1q23_A          180 GDKVLMPLAIQVHHAVCDGFHVGRMLNELQQYCDEW  215 (219)
T ss_dssp             TTEEEEEEEEEEETTTCCHHHHHHHHHHHHHHHHHC
T ss_pred             CCcEEEEEEEEEEchhhChHHHHHHHHHHHHHHhCc
Confidence            221   122223344455888899998888877764

>1onl_A Glycine cleavage system H protein; hybrid barrel-sandwich structure, structural genomics, riken structural genomics/proteomics initiative; 2.50A {Thermus thermophilus} SCOP: b.84.1.1

Probab=97.89  E-value=6.9e-06  Score=70.91  Aligned_cols=57  Identities=18%  Similarity=0.334  Sum_probs=48.4

Q ss_pred             cccCCccccCcchhhhhcccccceeecCCCeEEEEEeec---CCCccc---cCCc-EEEEEEcCC
Q psy16142        104 KKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVP---AGSKDV---PIGK-LVCIIVENE  161 (426)
Q Consensus       104 v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~---~G~~~v---~vG~-~l~~i~~~~  161 (426)
                      .++|+.|++||.+|+||+||+.++|.||.+|+|.+++..   ..+ .|   +.|+ -|+.|...+
T Consensus        44 p~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evn~~l~~~P~-lvn~dpy~~gWl~~i~~~~  107 (128)
T 1onl_A           44 PEVGRVVEKGEAVAVVESVKTASDIYAPVAGEIVEVNLALEKTPE-LVNQDPYGEGWIFRLKPRD  107 (128)
T ss_dssp             BCTTCEECTTCEEEEEEESSBEEEEECSSSEEEEEECTHHHHCTT-HHHHCTTTTTCCEEEEESC
T ss_pred             cCCCCEEeCCCEEEEEEEcceeeEEecCCCeEEEEEhhhhccChh-hhccCCCCCccEEEEEECC
Confidence            499999999999999999999999999999999999754   444 45   6676 888887543

>1hpc_A H protein of the glycine cleavage system; transit peptide; HET: LPA; 2.00A {Pisum sativum} SCOP: b.84.1.1 PDB: 1dxm_A* 1htp_A*

Probab=97.84  E-value=3.4e-06  Score=73.12  Aligned_cols=57  Identities=18%  Similarity=0.209  Sum_probs=46.5

Q ss_pred             cccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCc--ccc---CCc-EEEEEEcC
Q psy16142        104 KKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSK--DVP---IGK-LVCIIVEN  160 (426)
Q Consensus       104 v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~--~v~---vG~-~l~~i~~~  160 (426)
                      .++|+.|++||.+++||+||+.++|.||.+|+|.+++.+.++.  .|.   .|+ -|+.|...
T Consensus        44 p~~G~~V~~g~~l~~vEs~K~~~~I~aPvsG~V~evn~~l~~~P~lvn~dpy~~gWl~~i~~~  106 (131)
T 1hpc_A           44 PEPGVSVTKGKGFGAVESVKATSDVNSPISGEVIEVNTGLTGKPGLINSSPYEDGWMIKIKPT  106 (131)
T ss_dssp             CCTTCEECBTSEEEEEEESSCEEEEEBSSCEEEEEECTHHHHCTTHHHHCTTTTTCCEEEEES
T ss_pred             cCCCCEEeCCCEEEEEEecceeEEEecCCCeEEEEEhhhhhcChhhhccCCCCCceEEEEEEC
Confidence            4999999999999999999999999999999999997554430  342   455 77777654

>3a7l_A H-protein, glycine cleavage system H protein; lipoic acid, lipoyl, transport protein; 1.30A {Escherichia coli} PDB: 3a7a_B 3ab9_A* 3a8i_E* 3a8j_E* 3a8k_E*

Probab=97.79  E-value=8.8e-06  Score=70.24  Aligned_cols=57  Identities=19%  Similarity=0.170  Sum_probs=46.5

Q ss_pred             cccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCc--ccc---CCc-EEEEEEcC
Q psy16142        104 KKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSK--DVP---IGK-LVCIIVEN  160 (426)
Q Consensus       104 v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~--~v~---vG~-~l~~i~~~  160 (426)
                      .++|+.|++||.+|+||+||+.++|.||.+|+|.+++...++.  .|.   .|+ -|+.|...
T Consensus        45 p~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evN~~l~~~P~lvn~dpy~~gWl~~i~~~  107 (128)
T 3a7l_A           45 PEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWIFKIKAS  107 (128)
T ss_dssp             CCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGGTCTTHHHHCTTTTTCCEEEEES
T ss_pred             cCCCCEEeCCCEEEEEEecceeeEEecCCCeEEEEEhhhhccChHHhccCCCCCccEEEEEEC
Confidence            4899999999999999999999999999999999997654431  344   555 77777654

>3cla_A Type III chloramphenicol acetyltransferase; transferase (acyltransferase); HET: CLM; 1.75A {Escherichia coli} SCOP: c.43.1.1 PDB: 1cla_A* 2cla_A 4cla_A* 1cia_A 1qca_A*

Probab=97.71  E-value=5.7e-06  Score=77.40  Aligned_cols=93  Identities=10%  Similarity=0.131  Sum_probs=62.7

Q ss_pred             ccccccccchhhhHHHHHHHHHh----------cCCcEEEecCcccccccceeeeCCc---cchhhhccccccccccccC
Q psy16142         16 AEWHFLLYLLPWRWEPLLAGLRK----------KGGTVSISNLGMFGIKNFSAIINPP---QACILAVGSLSQRLVREGN   82 (426)
Q Consensus        16 ~~~~~~l~~i~~e~~~L~~kar~----------~gGtfTIsn~G~~G~~~~tpIInpp---q~aIlgvg~~~~~p~v~~~   82 (426)
                      ..+..++.+|++++++|+.+||+          +||||||||+|+++.+.++.-.+.+   ..+|+++|++.+.    ++
T Consensus       102 ~~~~~~~~~i~~~~~~l~~~ar~~~kL~~~~~~~ggtftISnlg~~~ft~i~~~~~~g~~~~~PIi~~G~~~~~----~~  177 (213)
T 3cla_A          102 CPYSSDIDQFMVNYLSVMERYKSDTKLFPQGVTPENHLNISALPWVNFDSFNLNVANFTDYFAPIITMAKYQQE----GD  177 (213)
T ss_dssp             CCCCSSHHHHHHHHHHHHHHHTTCCSSSTTSSCCSSEEEEEEETTCCCSCCCCCCSCCTTCCSCEEEEECCEEE----TT
T ss_pred             ecCCCCHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCEEEEEcCCCCCcccccccCCCCCcccccEEEeeEEEEE----CC
Confidence            34568999999999999999997          6899999999887533332111111   1367778888654    22


Q ss_pred             c---eEeccCCCCCcccceeeecccccCCcccc
Q psy16142         83 D---RVALPALSPTMEMGTIVSWAKKEGDKLNE  112 (426)
Q Consensus        83 ~---~i~mP~lg~s~d~g~i~~w~v~vGd~Ve~  112 (426)
                      .   .+.+..-+.-+||+.+.+|+....+.++.
T Consensus       178 ~~~m~lsls~DHRvvDG~~aa~Fl~~lk~~le~  210 (213)
T 3cla_A          178 RLLLPLSVQVHHAVCDGFHVARFINRLQELCNS  210 (213)
T ss_dssp             EEEEEEEEEEETTTCCHHHHHHHHHHHHHHHTS
T ss_pred             eEEEEEEEEEcccccChHHHHHHHHHHHHHHHh
Confidence            1   11222334445588888998888877764

>2i9d_A Chloramphenicol acetyltransferase; structural genomics, PSI- protein structure initiative, midwest center for structural genomics; 2.30A {Bacteroides thetaiotaomicron}

Probab=97.21  E-value=4.6e-05  Score=71.43  Aligned_cols=88  Identities=13%  Similarity=0.106  Sum_probs=56.9

Q ss_pred             ccccccccchhhhHHHHHHHHHh---------------cCCcEEEecCcccccccceeeeCCc---cchhhhcccccccc
Q psy16142         16 AEWHFLLYLLPWRWEPLLAGLRK---------------KGGTVSISNLGMFGIKNFSAIINPP---QACILAVGSLSQRL   77 (426)
Q Consensus        16 ~~~~~~l~~i~~e~~~L~~kar~---------------~gGtfTIsn~G~~G~~~~tpIInpp---q~aIlgvg~~~~~p   77 (426)
                      ..+..++.+|.+++++|+.+||+               +||||||||+|+++.+.++...+++   ..+|+++|+..+. 
T Consensus       105 ~~~~~~~~~i~~~~~~l~~~ar~~~kL~~~~~~~~~e~~ggtftISnlg~~~ft~i~~~~~~g~~~~~PIi~~Gk~~~~-  183 (217)
T 2i9d_A          105 FPYHNDFDTFYQEARLIIDAIPEDGDPYAAENEEVADGDYGLILLSATPDLYFTSITGTQEKRSGNNYPLLNAGKAIIR-  183 (217)
T ss_dssp             ECCCSSHHHHHHHHHHHHHHCCSSCCTTHHHHHHHHHTCCCEEEEEECTTCCCSEECCCBCSTTCCSSCEEEECCCEEE-
T ss_pred             ecCCCCHHHHHHHHHHHHHHHHhcCCCCCccccccccCCCCEEEEEcCCccccceeecCCCCCccceEEEEecceEEEE-
Confidence            35567899999999999999885               2899999999987533332222222   2467788888654 


Q ss_pred             ccccCceEecc----CCCCCcccceeeecccccCC
Q psy16142         78 VREGNDRVALP----ALSPTMEMGTIVSWAKKEGD  108 (426)
Q Consensus        78 ~v~~~~~i~mP----~lg~s~d~g~i~~w~v~vGd  108 (426)
                         ++ ...||    .-+.-+||+.+.+|+....+
T Consensus       184 ---~~-r~~m~lsls~DHRvvDG~~aa~Fl~~lk~  214 (217)
T 2i9d_A          184 ---EG-RLVMPIAMTIHHGFIDGHHLSLFYKKVED  214 (217)
T ss_dssp             ---TT-EEEEEEEEEEETTTCCHHHHHHHHHHHHH
T ss_pred             ---CC-cEEEEEEEEecchhhChHHHHHHHHHHHH
Confidence               22 22222    23334557777777766554

>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}

Probab=97.08  E-value=0.00016  Score=69.11  Aligned_cols=65  Identities=25%  Similarity=0.334  Sum_probs=56.4

Q ss_pred             cceeeecccccCCccccCcchhhhhccc----------------------------------------------------
Q psy16142         96 MGTIVSWAKKEGDKLNEGDLLAEIETDK----------------------------------------------------  123 (426)
Q Consensus        96 ~g~i~~w~v~vGd~Ve~gd~L~~vetdK----------------------------------------------------  123 (426)
                      .|.|.++++++||.|++||+|+++++..                                                    
T Consensus        30 ~G~V~~v~v~~G~~V~kGq~L~~ld~~~~~~~l~~a~a~l~~a~a~l~~a~~~~~r~~~L~~~g~~s~~~~~~a~~~~~~  109 (277)
T 2f1m_A           30 SGIILKRNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALADAQQ  109 (277)
T ss_dssp             CEEEEEECSCTTCEECTTSCSEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSTTCCHHHHHHHHHHHHH
T ss_pred             cEEEEEEEcCCCCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHH
Confidence            4899999999999999999999997631                                                    


Q ss_pred             -------------------ccceeecCCCeEEEEEeecCCCccccCC--cEEEEEEcCC
Q psy16142        124 -------------------ATMGFETPEEGYLAKILVPAGSKDVPIG--KLVCIIVENE  161 (426)
Q Consensus       124 -------------------~~~ei~a~~~G~v~~i~v~~G~~~v~vG--~~l~~i~~~~  161 (426)
                                         -...|.||++|+|..+.+.+|+ .|..|  ++|+.|...+
T Consensus       110 a~a~l~~a~a~l~~a~~~l~~~~I~AP~~G~V~~~~~~~G~-~v~~g~~~~l~~i~~~~  167 (277)
T 2f1m_A          110 ANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGA-LVQNGQATALATVQQLD  167 (277)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTEECCSSCEEECCCSSCBTC-EECTTCSSCSEEEEECS
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCEEECCCCeEEEeEEcCCCC-EEcCCCCceeEEEecCC
Confidence                               1247999999999999999999 89999  6999997644

>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}

Probab=96.97  E-value=0.00039  Score=68.87  Aligned_cols=65  Identities=22%  Similarity=0.356  Sum_probs=57.1

Q ss_pred             cceeeecccccCCccccCcchhhhhcccc---------------------------------------------------
Q psy16142         96 MGTIVSWAKKEGDKLNEGDLLAEIETDKA---------------------------------------------------  124 (426)
Q Consensus        96 ~g~i~~w~v~vGd~Ve~gd~L~~vetdK~---------------------------------------------------  124 (426)
                      .|.|.++++++||.|++||+|+++++...                                                   
T Consensus        65 ~G~V~~v~v~~G~~V~kGq~L~~ld~~~l~~a~~~l~~a~a~l~~a~~~~~r~~~L~~~~~~s~~~~~~a~~~~~~a~a~  144 (359)
T 3lnn_A           65 AGRIVSLNKQLGDEVKAGDVLFTIDSADLAQANSDAAKARAAMTMARRNLDRQRELDKSEIAAKRDFEQAQSDYDQAASE  144 (359)
T ss_dssp             CEEEEECCSCTTCEECTTCEEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSCCCCTTHHHHHHHHHHHHHH
T ss_pred             CEEEEEEEcCCCCEEcCCCEEEEEChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHH
Confidence            58999999999999999999999976432                                                   


Q ss_pred             -------------------------cceeecCCCeEEEEEeecCCCccccC-CcEEEEEEcCC
Q psy16142        125 -------------------------TMGFETPEEGYLAKILVPAGSKDVPI-GKLVCIIVENE  161 (426)
Q Consensus       125 -------------------------~~ei~a~~~G~v~~i~v~~G~~~v~v-G~~l~~i~~~~  161 (426)
                                               ...|.||++|+|.++.+.+|+ .|.. |++|+.|...+
T Consensus       145 l~~a~~~l~~~~~~~~~~~~~~~~~~~~i~AP~~G~V~~~~~~~G~-~v~~~g~~l~~i~~~~  206 (359)
T 3lnn_A          145 SQRADARLAQLGAKGGGTLQAGGGHILAVRSPINGRVVDLNAATGA-YWNDTTASLMTVADLS  206 (359)
T ss_dssp             HHHHHHHHHHHHHHHGGGBCSSTTSEEEEECSSCEEEEECCCCBTC-EECCSSCCSEEEECCS
T ss_pred             HHHHHHHHHHhcCCcchhhhhcccceEEEECCCCEEEEEeecCCCc-eeCCCCcceEEEecCC
Confidence                                     246999999999999999999 8999 99999997644

>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}

Probab=96.94  E-value=0.00045  Score=67.90  Aligned_cols=35  Identities=14%  Similarity=0.226  Sum_probs=30.6

Q ss_pred             ceeecCCCeEEEEEeecCCCccccCCcE---EEEEEcCC
Q psy16142        126 MGFETPEEGYLAKILVPAGSKDVPIGKL---VCIIVENE  161 (426)
Q Consensus       126 ~ei~a~~~G~v~~i~v~~G~~~v~vG~~---l~~i~~~~  161 (426)
                      ..|.||++|+|.++.+.+|+ .|..|++   |+.|...+
T Consensus       154 ~~i~AP~~G~V~~~~~~~G~-~v~~g~~~~~l~~i~~~~  191 (341)
T 3fpp_A          154 TRIVAPMAGEVTQITTLQGQ-TVIAAQQAPNILTLADMS  191 (341)
T ss_dssp             SEEECSSSEEEEEESSCTTC-EECCTTSCCCCEEEECCS
T ss_pred             CEEECCCCeEEEEEecCCCC-EEecCCCCceEEEEecCC
Confidence            45999999999999999999 8999987   88887543

>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B

Probab=96.93  E-value=0.00046  Score=70.31  Aligned_cols=64  Identities=20%  Similarity=0.326  Sum_probs=56.0

Q ss_pred             cceeeeccc-ccCCccccCcchhhhhcc------------------------------------------------cccc
Q psy16142         96 MGTIVSWAK-KEGDKLNEGDLLAEIETD------------------------------------------------KATM  126 (426)
Q Consensus        96 ~g~i~~w~v-~vGd~Ve~gd~L~~vetd------------------------------------------------K~~~  126 (426)
                      .|.|.++++ ++||.|++||+|+++++.                                                ....
T Consensus       129 ~G~V~~v~V~~~Gd~VkkGq~L~~ld~~~l~~aq~~~~~a~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~  208 (413)
T 3ne5_B          129 AGFIDKVYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEADIRRLIATQKIQTRF  208 (413)
T ss_dssp             CEEEEEECSCCTTCEECTTCEEEEEECCSSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCHHHHHHHHHHTSCCCEE
T ss_pred             CEEEEEEEeCCCCCEEcCCCEEEEEcCHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHhccccccE
Confidence            578999998 999999999999999841                                                1245


Q ss_pred             eeecCCCeEEEEEeecCCCccccCCcEEEEEEcC
Q psy16142        127 GFETPEEGYLAKILVPAGSKDVPIGKLVCIIVEN  160 (426)
Q Consensus       127 ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~  160 (426)
                      .|.||++|+|.++.+.+|+ .|..|++|+.|...
T Consensus       209 ~I~AP~~G~V~~~~v~~G~-~V~~G~~l~~I~~~  241 (413)
T 3ne5_B          209 TLKAPIDGVITAFDLRAGM-NIAKDNVVAKIQGM  241 (413)
T ss_dssp             EEECSSSEEEEECCCCTTC-EECTTSCSEEEEEE
T ss_pred             EEEcCCCeEEEEEEcCCCC-EECCCCcEEEEeCC
Confidence            7999999999999999999 89999999999753

>3klr_A Glycine cleavage system H protein; antiparallel beta sheet, beta sandwich, oxidoreductase; HET: GOL; 0.88A {Bos taurus} SCOP: b.84.1.0 PDB: 2edg_A

Probab=96.91  E-value=0.00038  Score=59.63  Aligned_cols=41  Identities=24%  Similarity=0.334  Sum_probs=37.4

Q ss_pred             ccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCC
Q psy16142        105 KEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGS  145 (426)
Q Consensus       105 ~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~  145 (426)
                      ++|+.|++|+.++.||++|+..+|.||.+|+|.++.....+
T Consensus        41 ~vG~~v~~G~~~~~VES~K~~sdi~aPvsG~VvevN~~l~~   81 (125)
T 3klr_A           41 EVGTKLNKQEEFGALESVKAASELYSPLSGEVTEINKALAE   81 (125)
T ss_dssp             CTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGTT
T ss_pred             CCCCEEcCCCEEEEEEEcceeeeeecCCCEEEEEEhhhhhh
Confidence            78999999999999999999999999999999999655443

>3mxu_A Glycine cleavage system H protein; seattle structural genomics center for infectious disease, S CAT-scratch disease, bacteremia; HET: CIT; 1.80A {Bartonella henselae}

Probab=96.77  E-value=0.00056  Score=59.85  Aligned_cols=42  Identities=29%  Similarity=0.404  Sum_probs=37.8

Q ss_pred             cccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCC
Q psy16142        104 KKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGS  145 (426)
Q Consensus       104 v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~  145 (426)
                      -++|+.|++|+.++.||++|+..+|.||.+|+|.++.-...+
T Consensus        62 P~vG~~v~~Gd~~~~VES~Ka~sdi~sPvsG~VvevN~~L~d  103 (143)
T 3mxu_A           62 PQNGTKLSKGDAAAVVESVKAASDVYAPLDGEVVEINAALAE  103 (143)
T ss_dssp             CCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGGT
T ss_pred             CCCCCEeeCCCEEEEEEecceeeeeecCcceEEEEEhhhhhh
Confidence            389999999999999999999999999999999998755443

>3tzu_A GCVH, glycine cleavage system H protein 1; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Mycobacterium marinum}

Probab=96.70  E-value=0.00051  Score=59.71  Aligned_cols=38  Identities=18%  Similarity=0.423  Sum_probs=35.7

Q ss_pred             cccCCccccCcchhhhhcccccceeecCCCeEEEEEee
Q psy16142        104 KKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILV  141 (426)
Q Consensus       104 v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v  141 (426)
                      -++|+.|++|+.++.||++|+..+|.||.+|+|.++.-
T Consensus        57 P~vG~~v~~G~~~~~VES~K~~sdi~sPvsG~VvevN~   94 (137)
T 3tzu_A           57 PEVGETVSAGESCGEVESTKTVSDLIAPASGQIVEVNT   94 (137)
T ss_dssp             CCTTCEECTTSEEEEEEESSEEEEEECSEEEEEEEECH
T ss_pred             CCCCCEEeCCCEEEEEEecceeeeeecCcceEEEEehh
Confidence            38999999999999999999999999999999999853

>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.64  E-value=0.0015  Score=53.25  Aligned_cols=48  Identities=17%  Similarity=0.205  Sum_probs=42.9

Q ss_pred             CcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEcCC
Q psy16142        113 GDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENE  161 (426)
Q Consensus       113 gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~  161 (426)
                      +...|.++.++-...|.||.+|+|.++++++|+ .|+.|++|+.++...
T Consensus         5 ~g~~~~~~~~~~~~~v~a~~~G~v~~~~v~~Gd-~V~~Gq~L~~le~~k   52 (100)
T 2dn8_A            5 SSGTCVFEKENDPTVLRSPSAGKLTQYTVEDGG-HVEAGSSYAEMEVMK   52 (100)
T ss_dssp             CCCCCCCCCCCCTTEEECSSCEEEEEESSCTTE-EECTTCEEEEEEETT
T ss_pred             CCEEEEEEcCCCCcEEeCCCCEEEEEEEcCCcC-EECCCCEEEEEEecc
Confidence            455688888988999999999999999999999 899999999998643

>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A

Probab=96.53  E-value=0.00064  Score=68.02  Aligned_cols=65  Identities=22%  Similarity=0.315  Sum_probs=56.0

Q ss_pred             cceeeecccccCCccccCcchhhhhcccc---------------------------------------------------
Q psy16142         96 MGTIVSWAKKEGDKLNEGDLLAEIETDKA---------------------------------------------------  124 (426)
Q Consensus        96 ~g~i~~w~v~vGd~Ve~gd~L~~vetdK~---------------------------------------------------  124 (426)
                      .|.|.++++++||.|++||+|++|++...                                                   
T Consensus        51 ~G~V~~v~v~~Gd~V~kGq~L~~ld~~~~~~~l~~a~a~l~~a~~~~~R~~~L~~~g~is~~~~~~a~~~~~~a~a~l~~  130 (369)
T 1vf7_A           51 NGIILKRLFKEGSDVKAGQQLYQIDPATYEADYQSAQANLASTQEQAQRYKLLVADQAVSKQQYADANAAYLQSKAAVEQ  130 (369)
T ss_dssp             CEEEEECCSCSSEEECTTSEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEEEEcCCCCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHHH
Confidence            48999999999999999999999975321                                                   


Q ss_pred             ------cceeecCCCeEEEEEeecCCCccccCC--cEEEEEEcCC
Q psy16142        125 ------TMGFETPEEGYLAKILVPAGSKDVPIG--KLVCIIVENE  161 (426)
Q Consensus       125 ------~~ei~a~~~G~v~~i~v~~G~~~v~vG--~~l~~i~~~~  161 (426)
                            ...|.||++|+|.++.+.+|+ .|..|  ++|+.|...+
T Consensus       131 a~~~l~~~~I~AP~~G~V~~~~v~~G~-~V~~g~g~~l~~i~~~~  174 (369)
T 1vf7_A          131 ARINLRYTKVLSPISGRIGRSAVTEGA-LVTNGQANAMATVQQLD  174 (369)
T ss_dssp             HHHHHHTTEEECSSSEEECCCSSCBTC-EECTTCSSCSEEEECCS
T ss_pred             HHHhhcCCEEECCCCeEEEEEEcCCCC-eEcCCCCceeEEEecCC
Confidence                  257999999999999999999 89995  8999987543

>3hgb_A Glycine cleavage system H protein; ssgcid, niaid, decode, UW, SBRI, lipoyl; 1.75A {Mycobacterium tuberculosis} PDB: 3ift_A

Probab=96.22  E-value=0.002  Score=57.05  Aligned_cols=38  Identities=18%  Similarity=0.365  Sum_probs=35.6

Q ss_pred             cccCCccccCcchhhhhcccccceeecCCCeEEEEEee
Q psy16142        104 KKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILV  141 (426)
Q Consensus       104 v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v  141 (426)
                      -++|+.|++|+.++.||+.|+..+|.||.+|+|.++.-
T Consensus        67 P~vG~~v~~Gd~~~~VESvKa~sdi~sPvsG~VvevN~  104 (155)
T 3hgb_A           67 PVIGTAVTAGETFGEVESTKSVSDLYAPISGKVSEVNS  104 (155)
T ss_dssp             CCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECT
T ss_pred             CCCCCEEeCCCEEEEEEecceeeeeecCcceEEEEEhh
Confidence            48999999999999999999999999999999988853

>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A

Probab=96.05  E-value=0.00066  Score=67.36  Aligned_cols=32  Identities=16%  Similarity=0.309  Sum_probs=28.1

Q ss_pred             eeecCCCeEEEEEeecCCCccccCCcE---EEEEEc
Q psy16142        127 GFETPEEGYLAKILVPAGSKDVPIGKL---VCIIVE  159 (426)
Q Consensus       127 ei~a~~~G~v~~i~v~~G~~~v~vG~~---l~~i~~  159 (426)
                      .|.||++|+|.++.+.+|+ .|..|++   |+.|..
T Consensus       156 ~i~AP~~G~V~~~~~~~G~-~v~~g~~~~~l~~i~~  190 (369)
T 4dk0_A          156 KITSPIDGTVISTPVSEGQ-TVNSNQTTPTIIKVAD  190 (369)
T ss_dssp             SCCCSCCSCCCBCCCCTTC-BCCTTTSCCCCBBCCC
T ss_pred             EEECCCCeEEEEeeCCCCC-CccCCCCcceEEEEcC
Confidence            5999999999999999999 8999998   665543

>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*

Probab=95.91  E-value=0.0089  Score=45.06  Aligned_cols=34  Identities=26%  Similarity=0.329  Sum_probs=30.9

Q ss_pred             eeecCCCeEEEEEeecCCCccccCCcEEEEEEcCC
Q psy16142        127 GFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENE  161 (426)
Q Consensus       127 ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~  161 (426)
                      +|.||.+|+|.++++++|+ .|..|++|+.|+...
T Consensus         1 ~v~a~~~G~v~~~~v~~G~-~V~~G~~l~~i~~~~   34 (72)
T 1z6h_A            1 TVSIQMAGNLWKVHVKAGD-QIEKGQEVAILESMK   34 (72)
T ss_dssp             CEECCSSEEEEEECCCTTC-EECTTCEEEEEEETT
T ss_pred             CEECcccEEEEEEEcCCcC-EECCCCEEEEEECCc
Confidence            4789999999999999999 899999999998653

>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A

Probab=95.73  E-value=0.011  Score=45.18  Aligned_cols=36  Identities=28%  Similarity=0.408  Sum_probs=32.4

Q ss_pred             cceeecCCCeEEEEEeecCCCccccCCcEEEEEEcCC
Q psy16142        125 TMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENE  161 (426)
Q Consensus       125 ~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~  161 (426)
                      ...|.||.+|+|.++++++|+ .|+.|++|+.|+...
T Consensus         8 ~~~v~a~~~G~v~~~~v~~G~-~V~~G~~L~~l~~~~   43 (77)
T 1dcz_A            8 EGEIPAPLAGTVSKILVKEGD-TVKAGQTVLVLEAMK   43 (77)
T ss_dssp             SSEEEBSSSCEEEEECCCTTC-EECTTSEEEEEEETT
T ss_pred             CeEEECCCCEEEEEEEcCCcC-EEcCCCEEEEEEccc
Confidence            457899999999999999999 899999999998643

>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A

Probab=95.67  E-value=0.013  Score=44.22  Aligned_cols=35  Identities=20%  Similarity=0.358  Sum_probs=31.7

Q ss_pred             ceeecCCCeEEEEEeecCCCccccCCcEEEEEEcCC
Q psy16142        126 MGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENE  161 (426)
Q Consensus       126 ~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~  161 (426)
                      ..|.||.+|+|.++++++|+ .|+.|++|+.++...
T Consensus         6 ~~v~a~~~G~v~~~~v~~G~-~V~~G~~l~~i~~~~   40 (74)
T 2d5d_A            6 NVVSAPMPGKVLRVLVRVGD-RVRVGQGLLVLEAMK   40 (74)
T ss_dssp             CEEECSSCEEEEEECCCTTC-EECTTCEEEEEEETT
T ss_pred             eEEecCCCEEEEEEEcCCCC-EeCCCCEEEEEeccc
Confidence            46899999999999999999 899999999998643

>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*

Probab=95.33  E-value=0.016  Score=48.09  Aligned_cols=34  Identities=24%  Similarity=0.360  Sum_probs=31.7

Q ss_pred             ceeecCCCeEEEEEeecCCCccccCCcEEEEEEcC
Q psy16142        126 MGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVEN  160 (426)
Q Consensus       126 ~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~  160 (426)
                      +.|.|+.+|+|.++++++|+ .|+.|++|+.|+..
T Consensus         2 ~~v~a~~~G~V~~v~v~~G~-~V~~Gq~L~~ld~~   35 (116)
T 2k32_A            2 VIIKPQVSGVIVNKLFKAGD-KVKKGQTLFIIEQD   35 (116)
T ss_dssp             EEECCSSCEEEEEECSCTTS-EECTTCEEEEEECT
T ss_pred             eEEeCcCCEEEEEEECCCcC-EECCCCEEEEECHH
Confidence            57899999999999999999 89999999999865

>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}

Probab=95.19  E-value=0.014  Score=45.86  Aligned_cols=36  Identities=19%  Similarity=0.257  Sum_probs=32.4

Q ss_pred             cceeecCCCeEEEEEeecCCCccccCCcEEEEEEcCC
Q psy16142        125 TMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENE  161 (426)
Q Consensus       125 ~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~  161 (426)
                      ...|.||.+|+|.++++++|+ .|..|++|+.|+...
T Consensus         5 ~~~v~a~~~G~v~~~~v~~Gd-~V~~G~~l~~ie~~k   40 (84)
T 2kcc_A            5 PTVLRSPSAGKLTQYTVEDGG-HVEAGSSYAEMEVMK   40 (84)
T ss_dssp             TTEECCSSSCCEEEESSCTTE-EECTTCEEEEEECSS
T ss_pred             CceEECCCCEEEEEEECCCCC-EECCCCEEEEEEecc
Confidence            346999999999999999999 899999999998644

>3na6_A Succinylglutamate desuccinylase/aspartoacylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Ruegeria SP}

Probab=94.87  E-value=0.027  Score=55.74  Aligned_cols=59  Identities=19%  Similarity=0.263  Sum_probs=48.7

Q ss_pred             eeecccccCCccccCcchhhhhc----ccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEcC
Q psy16142         99 IVSWAKKEGDKLNEGDLLAEIET----DKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVEN  160 (426)
Q Consensus        99 i~~w~v~vGd~Ve~gd~L~~vet----dK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~  160 (426)
                      +.+..++.||.|++||+|++|..    .....+|.||++|+|....  ..- .|..|+.|+.|...
T Consensus       267 l~~~~v~~Gd~V~~G~~la~I~dp~~~g~~~~~v~Ap~dGiVi~~~--~~~-~V~~G~~l~~Ia~~  329 (331)
T 3na6_A          267 LFEIMIDLGEPVQEGDLVARVWSPDRTGEAPVEYRARRSGVLISRH--FPG-MIKSGDCAAVIGVV  329 (331)
T ss_dssp             EEEESSCTTCEECTTCEEEEEECSSCSSCCCEEEECSSSEEEEEEE--CSS-EECTTCEEEEEECB
T ss_pred             EEEEcCCCCCEEcCCCEEEEEEcCccCCCeeEEEEcCCCEEEEEEe--CCC-ccCCCCEEEEEecc
Confidence            56778999999999999999986    3567899999999996554  444 68999999999653

>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics, PSI-2, protein structure initiative; 2.10A {Rhodobacter sphaeroides 2}

Probab=94.55  E-value=0.033  Score=55.47  Aligned_cols=59  Identities=17%  Similarity=0.239  Sum_probs=50.3

Q ss_pred             eeecccccCCccccCcchhhhhc----ccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEcC
Q psy16142         99 IVSWAKKEGDKLNEGDLLAEIET----DKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVEN  160 (426)
Q Consensus        99 i~~w~v~vGd~Ve~gd~L~~vet----dK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~  160 (426)
                      +.+..++.|+.|++||+|+.|+.    .++..+|.||.+|+|..+  .... .|..|+.|+.|...
T Consensus       277 ~~~~~~~~g~~V~~G~~La~i~d~~~~g~~~~~v~Ap~dG~v~~~--~~~~-~V~~Gd~l~~ia~~  339 (354)
T 3cdx_A          277 LFEPTHYVGEEVRTGETAGWIHFVEDVDTAPLELLYRRDGIVWFG--AGPG-RVTRGDAVAVVMED  339 (354)
T ss_dssp             EEEESCCTTCEECTTSEEEEEECTTSSSCCCEEEECCSCEEEEEE--ECSS-EECTTCEEEEEEEE
T ss_pred             EEEEeCCCCCEeCCCCEEEEEECCCCCCCeeEEEEcCCCeEEEEE--eCCC-ccCCCCEEEEEeee
Confidence            56777889999999999999986    478899999999999655  4676 78999999999753

>3fmc_A Putative succinylglutamate desuccinylase / aspart; S genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Shewanella amazonensis} PDB: 3lwu_A*

Probab=94.28  E-value=0.046  Score=54.84  Aligned_cols=59  Identities=20%  Similarity=0.256  Sum_probs=48.8

Q ss_pred             eeeecccccCCccccCcchhhhhc------ccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEc
Q psy16142         98 TIVSWAKKEGDKLNEGDLLAEIET------DKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVE  159 (426)
Q Consensus        98 ~i~~w~v~vGd~Ve~gd~L~~vet------dK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~  159 (426)
                      =+..+.++.||.|++||+|++|-.      .....+|.||.+|+|.  .....- .|..|+.|+.|..
T Consensus       299 Gl~~~~v~lGd~V~kG~~la~I~d~~~~g~g~~~~~v~Ap~dGiVi--~~~~~p-~V~~G~~l~~i~~  363 (368)
T 3fmc_A          299 GMVEYLGKVGVPMKATDPLVNLLRLDLYGTGEELTVLRLPEDGVPI--LHFASA-SVHQGTELYKVMT  363 (368)
T ss_dssp             EEEEECSCTTCCBCTTCEEEEEECGGGTTSSCSEEEEECSSSEEEE--EECSSS-EECTTCEEEEEEE
T ss_pred             EEEEEeCCCCCEeCCCCEEEEEEcCCCCCCCCeeEEEEcCCCEEEE--EEeCCC-ccCCCCEEEEEee
Confidence            345789999999999999999876      3467899999999994  444555 7999999999865

>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}

Probab=94.16  E-value=0.038  Score=44.74  Aligned_cols=36  Identities=25%  Similarity=0.434  Sum_probs=32.4

Q ss_pred             cceeecCCCeEEEEEeecCCCccccCCcEEEEEEcCC
Q psy16142        125 TMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENE  161 (426)
Q Consensus       125 ~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~  161 (426)
                      ...|.|+.+|+|.++++++|+ .|+.|++|+.|+...
T Consensus        14 ~~~v~a~~~G~v~~~~v~~Gd-~V~~Gq~L~~ie~~~   49 (99)
T 2ejm_A           14 QGGPLAPMTGTIEKVFVKAGD-KVKAGDSLMVMIAMK   49 (99)
T ss_dssp             CSSCBCSSSEEEEEECCCTTE-EECSSCEEEEEESSS
T ss_pred             ceEEecCCCEEEEEEECCCCC-EECCCCEEEEEEccc
Confidence            456899999999999999999 899999999998643

>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}

Probab=94.16  E-value=0.027  Score=45.21  Aligned_cols=35  Identities=23%  Similarity=0.454  Sum_probs=31.5

Q ss_pred             cceeecCCCeEEEEEeecCCCccccCCcEEEEEEcC
Q psy16142        125 TMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVEN  160 (426)
Q Consensus       125 ~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~  160 (426)
                      ...|.||.+|+|.++++++|+ .|..|++|+.|+..
T Consensus        25 ~~~v~a~~~G~v~~~~v~~Gd-~V~~Gq~L~~ie~~   59 (94)
T 2jku_A           25 SSVLRSPMPGVVVAVSVKPGD-AVAEGQEICVIEAM   59 (94)
T ss_dssp             CCCCCCSSSCEEEEECCCTTC-CCCTTCCCEEEEC-
T ss_pred             ceEEECCCCEEEEEEECCCCC-EEcCCCEEEEEecc
Confidence            456899999999999999999 89999999999864

>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A

Probab=93.16  E-value=0.056  Score=41.64  Aligned_cols=35  Identities=20%  Similarity=0.452  Sum_probs=31.5

Q ss_pred             ceeecCCCeEEEEE-------eecCCCccccCCcEEEEEEcCC
Q psy16142        126 MGFETPEEGYLAKI-------LVPAGSKDVPIGKLVCIIVENE  161 (426)
Q Consensus       126 ~ei~a~~~G~v~~i-------~v~~G~~~v~vG~~l~~i~~~~  161 (426)
                      ..|.||..|+|.++       ++++|+ .|..|++|+.|+...
T Consensus         5 ~~v~a~~~G~v~~~~~~~~~~~v~~G~-~V~~G~~l~~ie~~k   46 (80)
T 1bdo_A            5 HIVRSPMVGTFYRTPSPDAKAFIEVGQ-KVNVGDTLCIVEAMK   46 (80)
T ss_dssp             EEEECSSSEEEESSSSTTSCCSCCTTC-EECTTCEEEEEEETT
T ss_pred             eEEEcCCCeEEEEecccCcccccCCcC-EECCCCEEEEEEecc
Confidence            36899999999998       999999 899999999998754

>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}

Probab=92.29  E-value=0.058  Score=41.21  Aligned_cols=32  Identities=19%  Similarity=0.213  Sum_probs=28.4

Q ss_pred             ecCCCeEEEEEeecCCCccccCCcEEEEEEcCC
Q psy16142        129 ETPEEGYLAKILVPAGSKDVPIGKLVCIIVENE  161 (426)
Q Consensus       129 ~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~  161 (426)
                      .++.+|+|.++++++|+ .|..|++|+.++...
T Consensus        11 ~~~~~G~v~~~~v~~G~-~V~~G~~l~~ie~~k   42 (77)
T 2l5t_A           11 EGVTEGEIVRWDVKEGD-MVEKDQDLVEVMTDK   42 (77)
T ss_dssp             SSCCCEEEEECSCCTTC-EECSCCCCCEEESSS
T ss_pred             CCCccEEEEEEEeCCCC-EECCCCEEEEEEccc
Confidence            35789999999999999 899999999998653

>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A

Probab=91.61  E-value=0.16  Score=45.22  Aligned_cols=58  Identities=28%  Similarity=0.337  Sum_probs=44.1

Q ss_pred             ceeeecccccCCcccc----CcchhhhhcccccceeecCCCeEEEEE---------------------------------
Q psy16142         97 GTIVSWAKKEGDKLNE----GDLLAEIETDKATMGFETPEEGYLAKI---------------------------------  139 (426)
Q Consensus        97 g~i~~w~v~vGd~Ve~----gd~L~~vetdK~~~ei~a~~~G~v~~i---------------------------------  139 (426)
                      |.+... .++.|.+-.    |+-++...++   ..+.||++|+|..+                                 
T Consensus        21 G~vv~l-~~v~D~vfs~~~~G~Giai~p~~---~~v~AP~~G~V~~v~~t~hAigi~t~~G~evLiHiGidTV~l~G~gF   96 (161)
T 1f3z_A           21 GEIVNI-EDVPDVVFAEKIVGDGIAIKPTG---NKMVAPVDGTIGKIFETNHAFSIESDSGVELFVHFGIDTVELKGEGF   96 (161)
T ss_dssp             EEEEEG-GGSSSHHHHTTSSCEEEEEEECS---SEEECSSSEEEEEECTTSSEEEEEETTSCEEEEECSBSGGGGTTTTE
T ss_pred             eEEEEe-EECCCccccccceeCeEEEEeCC---CcEECCCCeEEEEEccCCeEEEEEeCCCCEEEEEECccchhcCCCcc
Confidence            455554 356666554    6666666654   57899999999988                                 


Q ss_pred             --eecCCCccccCCcEEEEEEc
Q psy16142        140 --LVPAGSKDVPIGKLVCIIVE  159 (426)
Q Consensus       140 --~v~~G~~~v~vG~~l~~i~~  159 (426)
                        ++++|+ .|+.|++|+++..
T Consensus        97 ~~~V~~Gd-~V~~G~~L~~~d~  117 (161)
T 1f3z_A           97 KRIAEEGQ-RVKVGDTVIEFDL  117 (161)
T ss_dssp             EECSCTTC-EECTTCEEEEECH
T ss_pred             EEEEeCcC-EECCCCEEEEECH
Confidence              899999 7999999999963

>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1

Probab=91.53  E-value=0.17  Score=38.78  Aligned_cols=28  Identities=14%  Similarity=0.275  Sum_probs=26.0

Q ss_pred             CeEEEEEeecCCCccccCCcEEEEEEcCC
Q psy16142        133 EGYLAKILVPAGSKDVPIGKLVCIIVENE  161 (426)
Q Consensus       133 ~G~v~~i~v~~G~~~v~vG~~l~~i~~~~  161 (426)
                      +|+|.++++++|+ .|..|++|+.++...
T Consensus        14 ~G~v~~~~v~~G~-~V~~G~~l~~ie~~~   41 (80)
T 1qjo_A           14 EVEVTEVMVKVGD-KVAAEQSLITVEGDK   41 (80)
T ss_dssp             CEEEEECCCCTTC-EECBTSEEEEEESSS
T ss_pred             CEEEEEEEcCCCC-EECCCCEEEEEEcCC
Confidence            9999999999999 899999999998754

>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*

Probab=91.46  E-value=0.15  Score=39.98  Aligned_cols=31  Identities=16%  Similarity=0.228  Sum_probs=27.5

Q ss_pred             CCCeEEEEEeecCCCccccCCcEEEEEEcCCc
Q psy16142        131 PEEGYLAKILVPAGSKDVPIGKLVCIIVENES  162 (426)
Q Consensus       131 ~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~~  162 (426)
                      ...|+|.++++++|+ .|..|++|+.++....
T Consensus        17 ~~~G~v~~~~v~~Gd-~V~~G~~l~~ie~~k~   47 (87)
T 3crk_C           17 MTMGTVQRWEKKVGE-KLSEGDLLAEIETDXA   47 (87)
T ss_dssp             CCEEEEEEECSCTTC-EECTTCEEEEEECSSC
T ss_pred             CCcEEEEEEEcCCCC-EEcCCCEEEEEECCcc
Confidence            468999999999999 8999999999987543

>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}

Probab=91.28  E-value=0.016  Score=45.51  Aligned_cols=36  Identities=11%  Similarity=0.241  Sum_probs=31.4

Q ss_pred             cceeecCCCeEEEEEeecCCCccccCCcEEEEEEcCC
Q psy16142        125 TMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENE  161 (426)
Q Consensus       125 ~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~  161 (426)
                      .++|.+|.-|+|.++++++|+ .|..|++|+.|+...
T Consensus         2 ~~~i~~p~~G~v~~~~v~~Gd-~V~~G~~L~~ie~~k   37 (85)
T 2k7v_A            2 VKEVNVPDIVEVTEVMVKVGD-KVAAEQSLITVEGDK   37 (85)
T ss_dssp             CSCCCCCSCCCCCSCCCSSSC-CCCCSSSCCCCSCCC
T ss_pred             CcEEECCCeEEEEEEEcCCCC-EEcCCCEEEEEEccc
Confidence            356778888999999999999 899999999997654

>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A

Probab=91.26  E-value=0.099  Score=40.13  Aligned_cols=31  Identities=19%  Similarity=0.236  Sum_probs=27.7

Q ss_pred             cCCCeEEEEEeecCCCccccCCcEEEEEEcCC
Q psy16142        130 TPEEGYLAKILVPAGSKDVPIGKLVCIIVENE  161 (426)
Q Consensus       130 a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~  161 (426)
                      ++.+|+|.++++++|+ .|..|++|+.++...
T Consensus        12 ~~~~G~i~~~~v~~Gd-~V~~G~~l~~ie~~k   42 (79)
T 1ghj_A           12 SIADGTVATWHKKPGE-AVKRDELIVDIETDK   42 (79)
T ss_dssp             SCSCEEECCCSSCTTS-EECSSCEEEEEECSS
T ss_pred             CCCCEEEEEEEcCCCC-EECCCCEEEEEEccc
Confidence            4579999999999999 899999999998654

>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1

Probab=91.14  E-value=0.16  Score=39.13  Aligned_cols=33  Identities=9%  Similarity=0.185  Sum_probs=29.0

Q ss_pred             eecCCCeEEEEEeecCCCccccCCcEEEEEEcCC
Q psy16142        128 FETPEEGYLAKILVPAGSKDVPIGKLVCIIVENE  161 (426)
Q Consensus       128 i~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~  161 (426)
                      +-++..|+|.++++++|+ .|+.|++|+.++...
T Consensus        10 ~g~~~~G~i~~~~v~~Gd-~V~~G~~l~~ie~~k   42 (81)
T 1gjx_A           10 IGGHENVDIIAVEVNVGD-TIAVDDTLITLETDK   42 (81)
T ss_dssp             CSSCSSEEEEEECCCSSC-BCCSSCCCEEEECSS
T ss_pred             CCCCCcEEEEEEEcCCCC-EECCCCEEEEEEeCC
Confidence            335789999999999999 899999999998654

>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}

Probab=91.09  E-value=0.1  Score=51.19  Aligned_cols=47  Identities=23%  Similarity=0.335  Sum_probs=39.5

Q ss_pred             cchhhhhcc-cccceeecCCCeEEEEEeecCCCccccCCcEEEEEEcCC
Q psy16142        114 DLLAEIETD-KATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENE  161 (426)
Q Consensus       114 d~L~~vetd-K~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~  161 (426)
                      ..-..|+.+ .-...|.++.+|+|.++++++|+ .|+.|++|+.|+..+
T Consensus        45 ~~~G~v~~~p~~~~~v~~~~~G~V~~v~v~~G~-~V~kGq~L~~ld~~~   92 (359)
T 3lnn_A           45 NLPAMIEADPAKLVKVLPPLAGRIVSLNKQLGD-EVKAGDVLFTIDSAD   92 (359)
T ss_dssp             EEEEEEECCSSSEEEECCSSCEEEEECCSCTTC-EECTTCEEEEEECSS
T ss_pred             EEEEEEEECCCcEEEEeccCCEEEEEEEcCCCC-EEcCCCEEEEEChHH
Confidence            444556664 55788999999999999999999 899999999998653

>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}

Probab=91.06  E-value=0.091  Score=49.71  Aligned_cols=42  Identities=17%  Similarity=0.136  Sum_probs=35.4

Q ss_pred             hhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEcC
Q psy16142        117 AEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVEN  160 (426)
Q Consensus       117 ~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~  160 (426)
                      ..|+.. -...|.++.+|+|.++++++|+ .|+.|++|+.|+..
T Consensus        15 G~v~~~-~~~~v~a~~~G~V~~v~v~~G~-~V~kGq~L~~ld~~   56 (277)
T 2f1m_A           15 GRTSAY-RIAEVRPQVSGIILKRNFKEGS-DIEAGVSLYQIDPA   56 (277)
T ss_dssp             EEEECS-EEEEECCSSCEEEEEECSCTTC-EECTTSCSEEECCH
T ss_pred             EEEEee-eEEEEEccccEEEEEEEcCCCC-EecCCCEEEEECcH
Confidence            345554 3567999999999999999999 89999999999754

>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A

Probab=91.04  E-value=0.21  Score=39.91  Aligned_cols=31  Identities=16%  Similarity=0.219  Sum_probs=27.4

Q ss_pred             CCCeEEEEEeecCCCccccCCcEEEEEEcCCc
Q psy16142        131 PEEGYLAKILVPAGSKDVPIGKLVCIIVENES  162 (426)
Q Consensus       131 ~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~~  162 (426)
                      ..+|+|.++++++|+ .|..|++|+.++....
T Consensus        16 ~~~G~v~~~~v~~Gd-~V~~G~~l~~ie~~K~   46 (93)
T 1k8m_A           16 IREVTVKEWYVKEGD-TVSQFDSICEVQSDKA   46 (93)
T ss_dssp             SCCEEEEEECCCTTC-EECSSSCCEEEECSSC
T ss_pred             CCCEEEEEEEcCCcC-EECCCCEEEEEEcCCc
Confidence            368999999999999 8999999999986543

>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=90.90  E-value=0.19  Score=40.61  Aligned_cols=30  Identities=33%  Similarity=0.566  Sum_probs=26.9

Q ss_pred             CCeEEEEEeecCCCccccCCcEEEEEEcCCc
Q psy16142        132 EEGYLAKILVPAGSKDVPIGKLVCIIVENES  162 (426)
Q Consensus       132 ~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~~  162 (426)
                      ..|+|.++++++|+ .|..|++|+.|+....
T Consensus        20 ~~G~i~~~~v~~Gd-~V~~G~~L~~ie~~K~   49 (98)
T 2dnc_A           20 EEGNIVKWLKKEGE-AVSAGDALCEIETDKA   49 (98)
T ss_dssp             SEECEEEESSCTTC-EECTTSEEEEEECSSC
T ss_pred             ccEEEEEEEcCCCC-EeCCCCEEEEEEcccc
Confidence            58999999999999 8999999999987543

>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}

Probab=90.25  E-value=0.23  Score=40.93  Aligned_cols=29  Identities=17%  Similarity=0.358  Sum_probs=26.5

Q ss_pred             CCeEEEEEeecCCCccccCCcEEEEEEcCC
Q psy16142        132 EEGYLAKILVPAGSKDVPIGKLVCIIVENE  161 (426)
Q Consensus       132 ~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~  161 (426)
                      ..|+|.++++++|+ .|..|++|++|+...
T Consensus        20 ~~G~v~~~~v~~Gd-~V~~G~~L~~iE~~K   48 (108)
T 2dne_A           20 QAGTIARWEKKEGD-KINEGDLIAEVETDK   48 (108)
T ss_dssp             CEEEEEECSSCTTC-EECTTSEEEEEECSS
T ss_pred             ccEEEEEEEcCCCC-EecCCCEEEEEEcCc
Confidence            58999999999999 899999999998654

>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1

Probab=90.25  E-value=0.2  Score=44.24  Aligned_cols=58  Identities=24%  Similarity=0.346  Sum_probs=42.6

Q ss_pred             ceeeecccccCCcccc----CcchhhhhcccccceeecCCCeEEEE----------------------------------
Q psy16142         97 GTIVSWAKKEGDKLNE----GDLLAEIETDKATMGFETPEEGYLAK----------------------------------  138 (426)
Q Consensus        97 g~i~~w~v~vGd~Ve~----gd~L~~vetdK~~~ei~a~~~G~v~~----------------------------------  138 (426)
                      |++... .++.|.+-.    |+-++...++   ..+.||++|+|..                                  
T Consensus        16 G~vv~l-~~v~D~vf~~~~~G~Giai~p~~---~~v~AP~~G~V~~v~~t~HAigi~~~~G~evLiHiGidTv~l~G~gF   91 (154)
T 2gpr_A           16 GTIITL-DEVEDEVFKERMLGDGFAINPKS---NDFHAPVSGKLVTAFPTKHAFGIQTKSGVEILLHIGLDTVSLDGNGF   91 (154)
T ss_dssp             EEEECG-GGSSCHHHHTTSSCEEEEEEESS---SEEECSSCEEEEECCTTCSEEEEECTTSCEEEEECSSSGGGGTTCSE
T ss_pred             eEEEEe-eECCCccccccceeCeEEEEeCC---CcEECCCCeEEEEEccCCeEEEEEcCCCCEEEEEECcchhhcCCCce
Confidence            444443 355665544    5666666654   5799999999987                                  


Q ss_pred             -EeecCCCccccCCcEEEEEEc
Q psy16142        139 -ILVPAGSKDVPIGKLVCIIVE  159 (426)
Q Consensus       139 -i~v~~G~~~v~vG~~l~~i~~  159 (426)
                       ++|++|| .|+.|++|+++..
T Consensus        92 ~~~V~~Gd-~V~~G~~L~~~d~  112 (154)
T 2gpr_A           92 ESFVTQDQ-EVNAGDKLVTVDL  112 (154)
T ss_dssp             EECCCTTC-EECTTCEEEEECH
T ss_pred             EEEEcCCC-EEcCCCEEEEECH
Confidence             4899999 7999999999963

>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A

Probab=89.61  E-value=0.17  Score=45.02  Aligned_cols=58  Identities=21%  Similarity=0.251  Sum_probs=43.6

Q ss_pred             ceeeecccccCCcccc----CcchhhhhcccccceeecCCCeEEEEE---------------------------------
Q psy16142         97 GTIVSWAKKEGDKLNE----GDLLAEIETDKATMGFETPEEGYLAKI---------------------------------  139 (426)
Q Consensus        97 g~i~~w~v~vGd~Ve~----gd~L~~vetdK~~~ei~a~~~G~v~~i---------------------------------  139 (426)
                      |++... .++.|.+-.    |+-++...+   ...+.||++|+|..+                                 
T Consensus        21 G~vv~l-~~v~D~vfs~~~~G~Giai~p~---~~~v~AP~~G~V~~v~~t~hAigi~t~~G~evLiHIGidTV~l~G~gF   96 (162)
T 1ax3_A           21 GEIHPI-TDVPDQVFSGKMMGDGFAILPS---EGIVVSPVRGKILNVFPTKHAIGLQSDGGREILIHFGIDTVSLKGEGF   96 (162)
T ss_dssp             EEEEEG-GGSSSHHHHTCTTSEEEEEEEC---SSEEEESCCEEEEECCSSSSEEEEESSSSCEEEEECSSSTTTTTTTTE
T ss_pred             eEEEEe-EECCCccccccceeceEEEEeC---CCcEECCCCeEEEEEccCCeEEEEEcCCCCEEEEEECccchhcCCCcc
Confidence            555554 556666554    566665554   457899999999988                                 


Q ss_pred             --eecCCCccccCCcEEEEEEc
Q psy16142        140 --LVPAGSKDVPIGKLVCIIVE  159 (426)
Q Consensus       140 --~v~~G~~~v~vG~~l~~i~~  159 (426)
                        +|++|+ .|+.|++|+.+.-
T Consensus        97 ~~~V~~Gd-~V~~G~~L~~~d~  117 (162)
T 1ax3_A           97 TSFVSEGD-RVEPGQKLLEVDL  117 (162)
T ss_dssp             EESCCCCS-EECSEEEEEEECH
T ss_pred             EEEEeCCC-EEcCCCEEEEECH
Confidence              899999 7999999999963

>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}

Probab=89.55  E-value=0.22  Score=48.39  Aligned_cols=42  Identities=17%  Similarity=0.268  Sum_probs=35.5

Q ss_pred             hhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEcC
Q psy16142        117 AEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVEN  160 (426)
Q Consensus       117 ~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~  160 (426)
                      ..|+.. -...|.++.+|+|.++++++|+ .|+.|++|+.|+..
T Consensus        24 G~v~~~-~~~~v~~~~~G~V~~v~v~~G~-~V~kG~~L~~ld~~   65 (341)
T 3fpp_A           24 GKLDAL-RKVDVGAQVSGQLKTLSVAIGD-KVKKDQLLGVIDPE   65 (341)
T ss_dssp             EEEEES-SEEECCCSSCEEEEEECCCTTC-EECTTCEEEEECCH
T ss_pred             EEEEee-EEEEEeccCCcEEEEEEeCCCC-EECCCCEEEEEChH
Confidence            345554 3668999999999999999999 89999999999754

>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A

Probab=89.25  E-value=0.41  Score=40.81  Aligned_cols=30  Identities=17%  Similarity=0.270  Sum_probs=26.9

Q ss_pred             CCeEEEEEeecCCCccccCCcEEEEEEcCCc
Q psy16142        132 EEGYLAKILVPAGSKDVPIGKLVCIIVENES  162 (426)
Q Consensus       132 ~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~~  162 (426)
                      .+|+|.++++++|+ .|..|++|++|+....
T Consensus        40 ~~G~V~~~~V~~Gd-~V~~Gd~L~~iEa~K~   69 (128)
T 1y8o_B           40 TMGTVQRWEKKVGE-KLSEGDLLAEIETDKA   69 (128)
T ss_dssp             SEEEEEEECSCTTC-EECTTCEEEEEECSSC
T ss_pred             ccEEEEEEecCCCC-EecCCCEEEEEEcCcc
Confidence            57999999999999 8999999999986543

>2qj8_A MLR6093 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.00A {Mesorhizobium loti}

Probab=88.77  E-value=0.38  Score=47.19  Aligned_cols=58  Identities=16%  Similarity=0.199  Sum_probs=46.2

Q ss_pred             eeecccccCCccccCcchhhhhc----ccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEc
Q psy16142         99 IVSWAKKEGDKLNEGDLLAEIET----DKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVE  159 (426)
Q Consensus        99 i~~w~v~vGd~Ve~gd~L~~vet----dK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~  159 (426)
                      +....+..|+.|++||+|+++-.    .....+|.||.+|+|.-.  ...- .|..|+.|+.|..
T Consensus       267 ~~~~~~~~g~~V~~G~~la~i~dp~~~G~~~~~v~Ap~dGiv~~~--~~~p-~V~~Gd~l~~ia~  328 (332)
T 2qj8_A          267 IFEPRCSVMDEVEQGDVVGVLHPMGSLSAASIDIRAQSKSTVFAI--RSAM-YVQGNEEVAILAR  328 (332)
T ss_dssp             EEEECSCTTCEECTTCEEEEEECTTCSSSCCEEEECSSSEEEEEE--ECSE-EECTTCEEEEEEE
T ss_pred             EEEEeCCCCCEeCCCCEEEEEECCCCCCCeeEEEEeCCCeEEEEE--eCCC-eeCCCCEEEEEee
Confidence            44577889999999999999843    456788999999999444  4554 6899999998864

>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1

Probab=87.12  E-value=0.11  Score=40.02  Aligned_cols=30  Identities=13%  Similarity=0.132  Sum_probs=26.6

Q ss_pred             CCCeEEEEEeecCCCccccCCcEEEEEEcCC
Q psy16142        131 PEEGYLAKILVPAGSKDVPIGKLVCIIVENE  161 (426)
Q Consensus       131 ~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~  161 (426)
                      ..+|+|.++++++|+ .|..|++|+.++...
T Consensus        14 ~~~G~v~~~~v~~Gd-~V~~G~~l~~ie~~k   43 (80)
T 1pmr_A           14 VADATVATWHKKPGD-AVVRDEVLVEIETDK   43 (80)
T ss_dssp             CSCEECCBCCCCTTC-CBSSSCCBCBCCSSS
T ss_pred             CccEEEEEEECCCcC-EECCCCEEEEEEccc
Confidence            468999999999999 899999999997643

>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A

Probab=86.74  E-value=0.76  Score=34.99  Aligned_cols=27  Identities=11%  Similarity=0.260  Sum_probs=24.4

Q ss_pred             CeEEEEEeecCCCccccCCcEEEEEEcCC
Q psy16142        133 EGYLAKILVPAGSKDVPIGKLVCIIVENE  161 (426)
Q Consensus       133 ~G~v~~i~v~~G~~~v~vG~~l~~i~~~~  161 (426)
                      + +|.++++++|+ .|..|++|+.++...
T Consensus        13 ~-~i~~~~v~~Gd-~V~~G~~l~~le~~k   39 (79)
T 1iyu_A           13 G-EVIELLVKTGD-LIEVEQGLVVLESAK   39 (79)
T ss_dssp             E-EEEEECCCTTC-BCCSSSEEEEEECSS
T ss_pred             C-EEEEEecCCCC-EEcCCCEEEEEEccc
Confidence            5 89999999999 899999999998654

>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B

Probab=86.63  E-value=0.55  Score=47.39  Aligned_cols=54  Identities=13%  Similarity=0.175  Sum_probs=41.0

Q ss_pred             CCccccCcchhhhhcc-cccceeecCCCeEEEEEee-cCCCccccCCcEEEEEEcCC
Q psy16142        107 GDKLNEGDLLAEIETD-KATMGFETPEEGYLAKILV-PAGSKDVPIGKLVCIIVENE  161 (426)
Q Consensus       107 Gd~Ve~gd~L~~vetd-K~~~ei~a~~~G~v~~i~v-~~G~~~v~vG~~l~~i~~~~  161 (426)
                      ++.-..-.....|+.| .-...|.++.+|+|.++++ ++|+ .|+.|++|+.|...+
T Consensus       102 ~~~~~~v~~~G~V~~~~~~~~~v~a~~~G~V~~v~V~~~Gd-~VkkGq~L~~ld~~~  157 (413)
T 3ne5_B          102 GPLTFAQSFPANVSYNEYQYAIVQARAAGFIDKVYPLTVGD-KVQKGTPLLDLTIPD  157 (413)
T ss_dssp             ECCEEEEEEEEEEEEEEEEEEEECCSSCEEEEEECSCCTTC-EECTTCEEEEEECCS
T ss_pred             eecceEEEEEEEEEECCCceEEEecccCEEEEEEEeCCCCC-EEcCCCEEEEEcCHH
Confidence            3333333445566643 4467899999999999998 9999 899999999998543

>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A

Probab=86.58  E-value=0.34  Score=47.98  Aligned_cols=41  Identities=22%  Similarity=0.221  Sum_probs=34.6

Q ss_pred             hhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEcC
Q psy16142        118 EIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVEN  160 (426)
Q Consensus       118 ~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~  160 (426)
                      .|+.. -...|.++.+|+|.++++++|+ .|+.|++|+.|+..
T Consensus        37 ~v~~~-~~~~v~a~v~G~V~~v~v~~Gd-~V~kGq~L~~ld~~   77 (369)
T 1vf7_A           37 RTNAF-RIAEVRPQVNGIILKRLFKEGS-DVKAGQQLYQIDPA   77 (369)
T ss_dssp             ECEES-CEEEECCSSCEEEEECCSCSSE-EECTTSEEEEECCH
T ss_pred             EEEee-eEEEEEeeCceEEEEEEcCCCC-EEcCCCEEEEECcH
Confidence            34443 3567999999999999999999 89999999999753

>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}

Probab=85.54  E-value=0.68  Score=50.02  Aligned_cols=36  Identities=25%  Similarity=0.426  Sum_probs=32.9

Q ss_pred             cceeecCCCeEEEEEeecCCCccccCCcEEEEEEcCC
Q psy16142        125 TMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENE  161 (426)
Q Consensus       125 ~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~  161 (426)
                      ...|.||..|+|.+++|++|+ .|+.||+|++++...
T Consensus       612 ~~~v~ap~~G~v~~~~v~~Gd-~V~~g~~l~~iEamK  647 (681)
T 3n6r_A          612 SKMLLCPMPGLIVKVDVEVGQ-EVQEGQALCTIEAMK  647 (681)
T ss_dssp             CSEEECCSCEEEEEECCCTTC-EECTTCEEEEEECSS
T ss_pred             CCeEECCCcEEEEEEEeCCCC-EEcCCCEEEEEEecC
Confidence            457999999999999999999 899999999998654

>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima}

Probab=84.88  E-value=0.42  Score=43.58  Aligned_cols=34  Identities=24%  Similarity=0.423  Sum_probs=28.8

Q ss_pred             eecccccCCccccCcchhhhhcccccceeecCCCeEEEEE
Q psy16142        100 VSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKI  139 (426)
Q Consensus       100 ~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i  139 (426)
                      +..+++.|+.|++||.||+..      .|-+.++|+|.+.
T Consensus        21 A~L~V~dG~~VkkG~~laeWD------PIitE~~G~V~d~   54 (193)
T 2xha_A           21 AKLHVNNGKDVNKGDLIAEEP------PIYARRSGVIVDV   54 (193)
T ss_dssp             CEESCCTTCEECTTCEEEEEC------CEECSSCEEEEEE
T ss_pred             CEEEECCCCEEcCCCEEEEeC------cEEEccCEEEEee
Confidence            467899999999999999776      7889999988543

>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A

Probab=82.81  E-value=0.29  Score=48.12  Aligned_cols=42  Identities=26%  Similarity=0.353  Sum_probs=35.2

Q ss_pred             hhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEcC
Q psy16142        117 AEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVEN  160 (426)
Q Consensus       117 ~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~  160 (426)
                      ..|+.. -...|.++.+|+|.++++++|+ .|+.|++|+.|+..
T Consensus        25 G~v~~~-~~~~v~~~~~G~V~~v~v~~G~-~V~~Gq~L~~ld~~   66 (369)
T 4dk0_A           25 GSIESI-NTVDVGAQVSGKITKLYVKLGQ-QVKKGDLLAEIDST   66 (369)
T ss_dssp             EEEECS-SCCCBCCCSCSBCCEECCCTTS-CCCSSCCCEECCCH
T ss_pred             EEEEee-eeEEEecCCCcEEEEEEECCCC-EECCCCEEEEEcCH
Confidence            345543 3567999999999999999999 89999999999754

>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*

Probab=80.23  E-value=1.4  Score=50.53  Aligned_cols=37  Identities=14%  Similarity=0.150  Sum_probs=33.3

Q ss_pred             cceeecCCCeEEEEEeecCCCccccCCcEEEEEEcCCc
Q psy16142        125 TMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENES  162 (426)
Q Consensus       125 ~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~~  162 (426)
                      ...|.||..|+|.+++|++|+ .|+.|++|+.++...-
T Consensus      1077 ~~~v~ap~~G~v~~~~v~~Gd-~V~~G~~l~~ieamK~ 1113 (1150)
T 3hbl_A         1077 PSHIGAQMPGSVTEVKVSVGE-TVKANQPLLITEAMKM 1113 (1150)
T ss_dssp             SSEEECSSSEEEEEECCCTTC-EECTTCEEEEEESSSC
T ss_pred             CceeecCceEEEEEEEeCCCC-EECCCCEEEEEEeccc
Confidence            357999999999999999999 8999999999987543

>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A

Probab=80.05  E-value=1.1  Score=48.71  Aligned_cols=36  Identities=25%  Similarity=0.429  Sum_probs=32.7

Q ss_pred             cceeecCCCeEEEEEeecCCCccccCCcEEEEEEcCC
Q psy16142        125 TMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENE  161 (426)
Q Consensus       125 ~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~  161 (426)
                      ...|.||..|+|.+++|++|+ .|+.|++|++|+...
T Consensus       649 ~~~v~ap~~G~V~~v~V~~Gd-~V~~Gq~L~~iEamK  684 (718)
T 3bg3_A          649 KGQIGAPMPGKVIDIKVVAGA-KVAKGQPLCVLSAMK  684 (718)
T ss_dssp             SSCEECSSCEEEEEECSCTTC-CBCTTCCCEEEESSS
T ss_pred             CceEeCCCCeEEEEEEeCCCC-eeCCCCEEEEEeccc
Confidence            357999999999999999999 899999999998654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	426
d1y8ob1	102	b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoa	9e-27
d1scza_	233	c.43.1.1 (A:) Dihydrolipoamide succinyltransferase	1e-20
d1scza_	233	c.43.1.1 (A:) Dihydrolipoamide succinyltransferase	2e-05
d1pmra_	80	b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate	5e-20
d1k8ma_	87	b.84.1.1 (A:) Lipoyl domain of the mitochondrial b	7e-20
d1ghja_	79	b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate	8e-18
d1laba_	80	b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide ac	1e-17
d1q23a_	214	c.43.1.1 (A:) Chloramphenicol acetyltransferase, C	3e-15
d1q23a_	214	c.43.1.1 (A:) Chloramphenicol acetyltransferase, C	3e-05
d3claa_	213	c.43.1.1 (A:) Chloramphenicol acetyltransferase, C	2e-14
d1gjxa_	81	b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide ac	4e-14
d1b5sa_	242	c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {	1e-13
d1qjoa_	80	b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide ac	2e-13
d1iyua_	79	b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide ac	2e-12
d1dcza_	77	b.84.1.1 (A:) Biotin carboxyl carrier domain of tr	2e-10
d1dpba_	243	c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {	4e-09
d1w85i_	42	a.9.1.1 (I:) E3/E1 binding domain of dihydrolipoyl	1e-08
d2cyua1	39	a.9.1.1 (A:2-40) E3-binding domain of dihydrolipoa	2e-06
d2gqba1	130	a.282.1.1 (A:1-130) Hypothetical protein RPA2825 {	0.002

>d1y8ob1 b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoamide acetyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (252), Expect = 9e-27
 Identities = 61/87 (70%), Positives = 74/87 (85%)

Query: 85  VALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAG 144
           V LPALSPTM MGT+  W KK G+KL+EGDLLAEIETDKAT+GFE  EEGYLAKILVP G
Sbjct: 8   VLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEG 67

Query: 145 SKDVPIGKLVCIIVENESDVAAFKDFK 171
           ++DVP+G  +CIIVE E+D++AF D++
Sbjct: 68  TRDVPLGTPLCIIVEKEADISAFADYR 94

>d1scza_ c.43.1.1 (A:) Dihydrolipoamide succinyltransferase {Escherichia coli [TaxId: 562]} Length = 233

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Dihydrolipoamide succinyltransferase
species: Escherichia coli [TaxId: 562]

 Score = 88.1 bits (218), Expect = 1e-20
 Identities = 47/162 (29%), Positives = 76/162 (46%), Gaps = 35/162 (21%)

Query: 279 PFTDLPVSGVRGVIAKRLLQSKQ---------------VIKLREQMNKALEKR-GAKLSI 322
               +P++ +R  +A+RLL++K                ++ LR+Q  +A EKR G +L  
Sbjct: 3   SEKRVPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYGEAFEKRHGIRLGF 62

Query: 323 NDFIIKATALASRRVPEANSSWQDTFIREYHSVDVSVAVNTDKGLFTPIVFDADKKGLVD 382
             F +KA   A +R PE N+S     +  ++  DVS+AV+T +GL TP++ D D  G+ D
Sbjct: 63  MSFYVKAVVEALKRYPEVNASIDGDDVVYHNYFDVSMAVSTPRGLVTPVLRDVDTLGMAD 122

Query: 383 ISNDSRSLISFRRPVKFSEESNDVKTLAAKAKEGKLQPHEFQ 424
           I                      +K LA K ++GKL   +  
Sbjct: 123 I-------------------EKKIKELAVKGRDGKLTVEDLT 145

>d1scza_ c.43.1.1 (A:) Dihydrolipoamide succinyltransferase {Escherichia coli [TaxId: 562]} Length = 233

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Dihydrolipoamide succinyltransferase
species: Escherichia coli [TaxId: 562]

 Score = 43.8 bits (103), Expect = 2e-05
 Identities = 18/56 (32%), Positives = 29/56 (51%)

Query: 39  KGGTVSISNLGMFGIKNFSAIINPPQACILAVGSLSQRLVREGNDRVALPALSPTM 94
            GG  +I+N G+FG    + IINPPQ+ IL + ++  R +        LP +   +
Sbjct: 145 TGGNFTITNGGVFGSLMSTPIINPPQSAILGMHAIKDRPMAVNGQVEILPMMYLAL 200

>d1pmra_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Escherichia coli [TaxId: 562]} Length = 80

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Escherichia coli [TaxId: 562]

 Score = 81.7 bits (202), Expect = 5e-20
 Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 1/75 (1%)

Query: 85  VALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAG 144
           + +P L  ++   T+ +W KK GD +   ++L EIETDK  +      +G L  +L   G
Sbjct: 5   ILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEG 64

Query: 145 SKDVPIGKLVCIIVE 159
           +  V   +++  + E
Sbjct: 65  TT-VTSRQILGRLRE 78

>d1k8ma_ b.84.1.1 (A:) Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 87

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.7 bits (202), Expect = 7e-20
 Identities = 19/81 (23%), Positives = 38/81 (46%), Gaps = 2/81 (2%)

Query: 85  VALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAG 144
             L  +   +   T+  W  KEGD +++ D + E+++DKA++   +  +G + K+     
Sbjct: 7   FKLSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLD 66

Query: 145 SKDVPIGKLVCII-VENESDV 164
                +GK +  I  E   D+
Sbjct: 67  DI-AYVGKPLVDIETEALKDL 86

>d1ghja_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Azotobacter vinelandii [TaxId: 354]} Length = 79

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Azotobacter vinelandii [TaxId: 354]

 Score = 75.6 bits (186), Expect = 8e-18
 Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 1/76 (1%)

Query: 85  VALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAG 144
           +  P    ++  GT+ +W KK G+ +   +L+ +IETDK  M      +G +A+I+   G
Sbjct: 4   IKAPTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEG 63

Query: 145 SKDVPIGKLVCIIVEN 160
              V  G+L+  + E 
Sbjct: 64  DT-VLSGELLGKLTEG 78

>d1laba_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]} Length = 80

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 74.8 bits (184), Expect = 1e-17
 Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 1/73 (1%)

Query: 85  VALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAG 144
             LP +   +  G IV W  K GD++NE D+L E++ DKA +   +P +G + +ILVP G
Sbjct: 4   FKLPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEG 63

Query: 145 SKDVPIGKLVCII 157
           +    +G+ +  +
Sbjct: 64  TV-ATVGQTLITL 75

>d1q23a_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT {Escherichia coli [TaxId: 562]} Length = 214

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Chloramphenicol acetyltransferase, CAT
species: Escherichia coli [TaxId: 562]

 Score = 71.8 bits (176), Expect = 3e-15
 Identities = 14/118 (11%), Positives = 25/118 (21%), Gaps = 21/118 (17%)

Query: 309 MNKALEKR-GAKLSINDFIIKATALASRRVPEANSSWQDTFIREYHSVDVSVAVNTDKGL 367
           +   L+     K       I   A      PE   + +D  +  + SV     V  ++  
Sbjct: 37  ITAFLKTVKKNKHKFYPAFIHILARLMNAHPEFRMAMKDGELVIWDSVHPCYTVFHEQTE 96

Query: 368 FTPIVFDADKKGLVDISNDSRSLISFRRPVKFSEESNDVKTLAAKAKEGK-LQPHEFQ 424
               ++                              +      A   E     P  F 
Sbjct: 97  TFSSLWSEYHDDFRQF-------------------LHIYSQDVACYGENLAYFPKGFI 135

>d1q23a_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT {Escherichia coli [TaxId: 562]} Length = 214

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Chloramphenicol acetyltransferase, CAT
species: Escherichia coli [TaxId: 562]

 Score = 42.6 bits (100), Expect = 3e-05
 Identities = 7/54 (12%), Positives = 16/54 (29%), Gaps = 3/54 (5%)

Query: 39  KGGTVSISNLGMFGIKNFSAIINPPQACILAVGSLSQRLVREGNDRVALP-ALS 91
                 +S        +F   +         V ++ +       D+V +P A+ 
Sbjct: 135 IENMFFVSANPWVSFTSFDLNVANMDNFFAPVFTMGK--YYTQGDKVLMPLAIQ 186

>d3claa_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT {Escherichia coli [TaxId: 562]} Length = 213

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Chloramphenicol acetyltransferase, CAT
species: Escherichia coli [TaxId: 562]

 Score = 69.5 bits (170), Expect = 2e-14
 Identities = 10/85 (11%), Positives = 24/85 (28%), Gaps = 1/85 (1%)

Query: 309 MNKALEKRGA-KLSINDFIIKATALASRRVPEANSSWQDTFIREYHSVDVSVAVNTDKGL 367
           +    +            +I   A A  +  E   + +D  +  + SVD    V   +  
Sbjct: 36  ITTLKKSLDDSAYKFYPVMIYLIAQAVNQFDELRMAIKDDELIVWDSVDPQFTVFHQETE 95

Query: 368 FTPIVFDADKKGLVDISNDSRSLIS 392
               +       +     +  S++ 
Sbjct: 96  TFSALSCPYSSDIDQFMVNYLSVME 120

>d1gjxa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Neisseria meningitidis [TaxId: 487]} Length = 81

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Neisseria meningitidis [TaxId: 487]

 Score = 65.2 bits (159), Expect = 4e-14
 Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 3/79 (3%)

Query: 85  VALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAG 144
           + +P +    E   I++     GD +   D L  +ETDKATM       G + ++ V  G
Sbjct: 5   LKVPDIG-GHENVDIIAVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVG 63

Query: 145 SKDVPIGKLVCII-VENES 162
            K +  G L+ ++  E  +
Sbjct: 64  DK-ISEGGLIVVVEAEGTA 81

>d1b5sa_ c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]} Length = 242

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Dihydrolipoamide acetyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 67.9 bits (165), Expect = 1e-13
 Identities = 45/175 (25%), Positives = 76/175 (43%), Gaps = 36/175 (20%)

Query: 267 APSKSAKPTANGPFTDLPVSGVRGVIAKRLLQSKQVI---------------KLREQMNK 311
           A +K A      P T   +SG+R  IAK ++ SK                    R++   
Sbjct: 1   AAAKPATTEGEFPETREKMSGIRRAIAKAMVHSKHTAPHVTLMDEADVTKLVAHRKKFKA 60

Query: 312 ALEKRGAKLSINDFIIKATALASRRVPEANSSWQDTF--IREYHSVDVSVAVNTDKGLFT 369
              ++G KL+   +++KA   A R  P  N+S  D    I + H  ++ +A +TD+GL  
Sbjct: 61  IAAEKGIKLTFLPYVVKALVSALREYPVLNTSIDDETEEIIQKHYYNIGIAADTDRGLLV 120

Query: 370 PIVFDADKKGLVDISNDSRSLISFRRPVKFSEESNDVKTLAAKAKEGKLQPHEFQ 424
           P++  AD+K +  +                   + ++  LA KA++GKL P E +
Sbjct: 121 PVIKHADRKPIFAL-------------------AQEINELAEKARDGKLTPGEMK 156

>d1qjoa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Escherichia coli [TaxId: 562]} Length = 80

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Escherichia coli [TaxId: 562]

 Score = 63.3 bits (154), Expect = 2e-13
 Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 4/79 (5%)

Query: 85  VALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAG 144
           V +P +    +   +     K GDK+     L  +E DKA+M    P  G + ++ V  G
Sbjct: 5   VNVPDIG--GDEVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVG 62

Query: 145 SKDVPIGKLVCII-VENES 162
            K V  G L+ I  VE  +
Sbjct: 63  DK-VKTGSLIMIFEVEGAA 80

>d1iyua_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]} Length = 79

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 60.3 bits (146), Expect = 2e-12
 Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 1/66 (1%)

Query: 97  GTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCI 156
           G ++    K GD +     L  +E+ KA+M   +P+ G +  + V  G K +  G  +  
Sbjct: 13  GEVIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDK-LKEGDAIIE 71

Query: 157 IVENES 162
           +     
Sbjct: 72  LEPAAG 77

>d1dcza_ b.84.1.1 (A:) Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S) {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]} Length = 77

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S)
species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]

 Score = 54.5 bits (131), Expect = 2e-10
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 1/61 (1%)

Query: 97  GTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCI 156
           GT+     KEGD +  G  +  +E  K       P +G + K+LV      V  G+ +  
Sbjct: 17  GTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDA-VQGGQGLIK 75

Query: 157 I 157
           I
Sbjct: 76  I 76

>d1dpba_ c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]} Length = 243

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Dihydrolipoamide acetyltransferase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 54.5 bits (130), Expect = 4e-09
 Identities = 31/151 (20%), Positives = 60/151 (39%), Gaps = 17/151 (11%)

Query: 278 GPFTDLPVSGVRGVIAKRLLQSKQVI---------------KLREQMNKALEKRGAKLSI 322
           G   ++P++ +  + A  L +S   +                 R       EK G KL++
Sbjct: 13  GEIEEVPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQKAVAEKAGVKLTV 72

Query: 323 NDFIIKATALASRRVPEANSSWQDTFIR--EYHSVDVSVAVNTDKGLFTPIVFDADKKGL 380
              ++KA A   + +P+ NSS   +         V +  AV+T  GL  P++ + D+K L
Sbjct: 73  LPLLLKACAYLLKELPDFNSSLAPSGQALIRKKYVHIGFAVDTPDGLLVPVIRNVDQKSL 132

Query: 381 VDISNDSRSLISFRRPVKFSEESNDVKTLAA 411
           + ++ ++  L    R  K   ++        
Sbjct: 133 LQLAAEAAELAEKARSKKLGADAMQGACFTI 163

>d1w85i_ a.9.1.1 (I:) E3/E1 binding domain of dihydrolipoyl acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]} Length = 42

class: All alpha proteins
fold: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
superfamily: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
family: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
domain: E3/E1 binding domain of dihydrolipoyl acetyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 48.3 bits (116), Expect = 1e-08
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 220 RVYASPLAKRLAAEKGLDLSSIGAGSGLFGSITSADLSKASK 261
           RV A P  ++ A EKG+D+  +  G+G  G +   D+     
Sbjct: 1   RVIAMPSVRKYAREKGVDIRLV-QGTGKNGRVLKEDIDAFLA 41

>d2cyua1 a.9.1.1 (A:2-40) E3-binding domain of dihydrolipoamide succinyltransferase {Escherichia coli [TaxId: 562]} Length = 39

class: All alpha proteins
fold: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
superfamily: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
family: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
domain: E3-binding domain of dihydrolipoamide succinyltransferase
species: Escherichia coli [TaxId: 562]

 Score = 42.2 bits (100), Expect = 2e-06
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)

Query: 224 SPLAKRLAAEKGLDLSSIGAGSGLFGSITSADLSKA 259
           SP  +RL AE  LD S+I  G+G+ G +T  D+ K 
Sbjct: 2   SPAIRRLLAEHNLDASAI-KGTGVGGRLTREDVEKH 36

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	426
d1scza_	233	Dihydrolipoamide succinyltransferase {Escherichia	99.97
d1dpba_	243	Dihydrolipoamide acetyltransferase {Azotobacter vi	99.96
d1b5sa_	242	Dihydrolipoamide acetyltransferase {Bacillus stear	99.96
d1y8ob1	102	Lipoyl domain of dihydrolipoamide acetyltransferas	99.81
d1ghja_	79	Lipoyl domain of the 2-oxoglutarate dehydrogenase	99.78
d1k8ma_	87	Lipoyl domain of the mitochondrial branched-chain	99.76
d1pmra_	80	Lipoyl domain of the 2-oxoglutarate dehydrogenase	99.75
d1laba_	80	Lipoyl domain of dihydrolipoamide acetyltransferas	99.74
d1gjxa_	81	Lipoyl domain of dihydrolipoamide acetyltransferas	99.67
d1qjoa_	80	Lipoyl domain of dihydrolipoamide acetyltransferas	99.66
d1iyua_	79	Lipoyl domain of dihydrolipoamide acetyltransferas	99.65
d1q23a_	214	Chloramphenicol acetyltransferase, CAT {Escherichi	99.63
d3claa_	213	Chloramphenicol acetyltransferase, CAT {Escherichi	99.63
d1dpba_	243	Dihydrolipoamide acetyltransferase {Azotobacter vi	99.58
d1scza_	233	Dihydrolipoamide succinyltransferase {Escherichia	99.53
d1b5sa_	242	Dihydrolipoamide acetyltransferase {Bacillus stear	99.48
d1dcza_	77	Biotin carboxyl carrier domain of transcarboxylase	99.47
d1w85i_	42	E3/E1 binding domain of dihydrolipoyl acetyltransf	99.42
d1bdoa_	80	Biotinyl domain of acetyl-CoA carboxylase {Escheri	99.34
d2cyua1	39	E3-binding domain of dihydrolipoamide succinyltran	99.33
d1q23a_	214	Chloramphenicol acetyltransferase, CAT {Escherichi	97.34
d3claa_	213	Chloramphenicol acetyltransferase, CAT {Escherichi	96.59
d1dcza_	77	Biotin carboxyl carrier domain of transcarboxylase	96.31
d1onla_	127	Protein H of glycine cleavage system {Thermus ther	95.74
d1hpca_	131	Protein H of glycine cleavage system {Pea (Pisum s	95.58
d1iyua_	79	Lipoyl domain of dihydrolipoamide acetyltransferas	94.01
d1vf7a_	237	Multidrug resistance protein MexA domain {Pseudomo	93.61
d1bdoa_	80	Biotinyl domain of acetyl-CoA carboxylase {Escheri	93.57
d1qjoa_	80	Lipoyl domain of dihydrolipoamide acetyltransferas	92.41
d1gjxa_	81	Lipoyl domain of dihydrolipoamide acetyltransferas	92.14
d1y8ob1	102	Lipoyl domain of dihydrolipoamide acetyltransferas	92.11
d1k8ma_	87	Lipoyl domain of the mitochondrial branched-chain	91.57
d1laba_	80	Lipoyl domain of dihydrolipoamide acetyltransferas	90.44
d1ghja_	79	Lipoyl domain of the 2-oxoglutarate dehydrogenase	90.2
d1pmra_	80	Lipoyl domain of the 2-oxoglutarate dehydrogenase	88.63
d1brwa3	103	Pyrimidine nucleoside phosphorylase {Bacillus stea	85.22
d1uoua3	105	Thymidine phosphorylase {Human (Homo sapiens) [Tax	82.88

>d1scza_ c.43.1.1 (A:) Dihydrolipoamide succinyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Dihydrolipoamide succinyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=4.6e-31  Score=249.41  Aligned_cols=128  Identities=35%  Similarity=0.555  Sum_probs=121.5

Q ss_pred             CceeecCCchhhHHHHHHHhhHHH---------------HHHHHHHHHHHH-HhCCcccHHHHHHHHHHHHhhhcccccc
Q psy16142        279 PFTDLPVSGVRGVIAKRLLQSKQV---------------IKLREQMNKALE-KRGAKLSINDFIIKATALASRRVPEANS  342 (426)
Q Consensus       279 ~~~~~~ls~~Rk~iA~~m~~S~~~---------------~~lr~~~~~~~~-~~~~~~s~~~~~~ka~~~al~~~p~~n~  342 (426)
                      .++++||++|||+||++|++||++               +++|+++++... +.|.++|+++||+||++.||++||.+|+
T Consensus         3 ~ee~vpls~~rk~ia~~m~~S~~~iP~~~~~~evd~t~l~~~r~~~~~~~~~~~~~klt~~~~likA~a~aL~~~P~~Na   82 (233)
T d1scza_           3 SEKRVPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYGEAFEKRHGIRLGFMSFYVKAVVEALKRYPEVNA   82 (233)
T ss_dssp             SCCCCCCCHHHHHHHHHHHHHHTTSCEEEEEEEEECHHHHHHHHHHHHHHHHHHSSCCCSHHHHHHHHHHHHHHCTTTTC
T ss_pred             CCcccCCcHHHHHHHHHHHHHhccCCeEEEEEEEEHHHHHHHHHHHHHhhHhhcCCccCHHHHHHHHHHHHHHhCchhhe
Confidence            356789999999999999999987               789999887664 4699999999999999999999999999


Q ss_pred             eeeCCceEEcCCCcEEEEeecCCceEeecccCcCCCCHHHHHhccccccccccCcCCccchHHHHHHHHHHHcCCCCccc
Q psy16142        343 SWQDTFIREYHSVDVSVAVNTDKGLFTPIVFDADKKGLVDISNDSRSLISFRRPVKFSEESNDVKTLAAKAKEGKLQPHE  422 (426)
Q Consensus       343 ~~~~~~i~~~~~v~i~iAv~~~~GL~~pvi~~a~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~l~~~e  422 (426)
                      +|+++.|++++++||||||++++||+||||+|+|+||+.||++                   ++++|++|||+|+|+++|
T Consensus        83 ~~~~~~i~~~~~vnIgiAv~~~~GL~vPvI~~a~~~sl~eia~-------------------~~~~l~~~ar~~~L~~~d  143 (233)
T d1scza_          83 SIDGDDVVYHNYFDVSMAVSTPRGLVTPVLRDVDTLGMADIEK-------------------KIKELAVKGRDGKLTVED  143 (233)
T ss_dssp             EEETTEEECCSSCCEEECEEETTEEECCEETTGGGCCHHHHHH-------------------HHHHHHHHTTTTCCCHHH
T ss_pred             EEcCCeEEEeccceEEEEEEcCCCeEEeEeeccccCCHHHHHH-------------------HHHHHHHHhhcCCCCHHH
Confidence            9999999999999999999999999999999999999999999                   999999999999999999


Q ss_pred             ccC
Q psy16142        423 FQV  425 (426)
Q Consensus       423 ~~~  425 (426)
                      |+|
T Consensus       144 ~~g  146 (233)
T d1scza_         144 LTG  146 (233)
T ss_dssp             HSC
T ss_pred             hCC
Confidence            998

>d1dpba_ c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Dihydrolipoamide acetyltransferase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.96  E-value=3.4e-30  Score=245.04  Aligned_cols=129  Identities=27%  Similarity=0.405  Sum_probs=122.4

Q ss_pred             CCceeecCCchhhHHHHHHHhhHHH---------------HHHHHHHHHHHHHhCCcccHHHHHHHHHHHHhhhcccccc
Q psy16142        278 GPFTDLPVSGVRGVIAKRLLQSKQV---------------IKLREQMNKALEKRGAKLSINDFIIKATALASRRVPEANS  342 (426)
Q Consensus       278 ~~~~~~~ls~~Rk~iA~~m~~S~~~---------------~~lr~~~~~~~~~~~~~~s~~~~~~ka~~~al~~~p~~n~  342 (426)
                      +..+++||++|||+||++|++||++               +++|+.+++..++.|.|+|+++||+||++.||++||.+|+
T Consensus        13 G~~e~vpls~~Rk~iA~~m~~S~~~iPh~~~~~evD~t~l~~~r~~l~~~~~~~~~k~t~~~~iikA~a~Al~~~P~~Ns   92 (243)
T d1dpba_          13 GEIEEVPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQKAVAEKAGVKLTVLPLLLKACAYLLKELPDFNS   92 (243)
T ss_dssp             SCCCCCCCCHHHHHHHHHHHHHHHHSCEEEEEEEEECHHHHHHHHHTHHHHHHTTCCCCSHHHHHHHHHHHHHHSGGGGE
T ss_pred             CCcEEEECcHHHHHHHHHHHHhhccCCEEEEEEEEecchHHHhhhhhhhhhhhcCccccHHHHHHHHHHHHHHHhhhhhh
Confidence            5667899999999999999999988               7788888887778899999999999999999999999999


Q ss_pred             eeeCC--ceEEcCCCcEEEEeecCCceEeecccCcCCCCHHHHHhccccccccccCcCCccchHHHHHHHHHHHcCCCCc
Q psy16142        343 SWQDT--FIREYHSVDVSVAVNTDKGLFTPIVFDADKKGLVDISNDSRSLISFRRPVKFSEESNDVKTLAAKAKEGKLQP  420 (426)
Q Consensus       343 ~~~~~--~i~~~~~v~i~iAv~~~~GL~~pvi~~a~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~l~~  420 (426)
                      +|+++  .++++.++||||||++++||+||||+|||+|||.+|+.                   ++++|++|||+|+|++
T Consensus        93 ~~~~~~~~~~~~~~inigiAv~~~~GL~vPVI~~a~~~sl~~i~~-------------------~~~~l~~~ar~~~l~~  153 (243)
T d1dpba_          93 SLAPSGQALIRKKYVHIGFAVDTPDGLLVPVIRNVDQKSLLQLAA-------------------EAAELAEKARSKKLGA  153 (243)
T ss_dssp             EECTTSSCEEECSSCCEEECEEETTEEECCEETTGGGSCHHHHHH-------------------HHHHHHHHHHTTCCCG
T ss_pred             ccccccccceeecccceeeeeccCcceeeeeecchhhhhHHHHHH-------------------HHHHHHHHhhhccccc
Confidence            99765  78999999999999999999999999999999999999                   9999999999999999


Q ss_pred             ccccC
Q psy16142        421 HEFQV  425 (426)
Q Consensus       421 ~e~~~  425 (426)
                      +||+|
T Consensus       154 ~d~~g  158 (243)
T d1dpba_         154 DAMQG  158 (243)
T ss_dssp             GGGSC
T ss_pred             ccccC
Confidence            99998

>d1b5sa_ c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Dihydrolipoamide acetyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.96  E-value=1.7e-29  Score=240.26  Aligned_cols=128  Identities=33%  Similarity=0.552  Sum_probs=121.4

Q ss_pred             CceeecCCchhhHHHHHHHhhHHH---------------HHHHHHHHHHHHHhCCcccHHHHHHHHHHHHhhhcccccce
Q psy16142        279 PFTDLPVSGVRGVIAKRLLQSKQV---------------IKLREQMNKALEKRGAKLSINDFIIKATALASRRVPEANSS  343 (426)
Q Consensus       279 ~~~~~~ls~~Rk~iA~~m~~S~~~---------------~~lr~~~~~~~~~~~~~~s~~~~~~ka~~~al~~~p~~n~~  343 (426)
                      ..+++||++|||+||++|++||++               +++|+++++..++.|.|+|+++||+||++.||++||.+|++
T Consensus        13 ~~~~~~ls~~rk~ia~~m~~S~~~iPh~t~~~evDvt~l~~~r~~lk~~~~~~g~klT~~~~likA~a~AL~~~P~~Na~   92 (242)
T d1b5sa_          13 PETREKMSGIRRAIAKAMVHSKHTAPHVTLMDEADVTKLVAHRKKFKAIAAEKGIKLTFLPYVVKALVSALREYPVLNTS   92 (242)
T ss_dssp             SCCCCCCCHHHHHHHHHHHHHTTSSCCCEEEEEEECHHHHHHHHHTHHHHHHTTCCCCSHHHHHHHHHHHHHHCGGGSCC
T ss_pred             CceeeeCcHHHHHHHHHHHHhhccCCeEEEEEEEeehhHHHhhhhhhhhhhhcccccchhhHHHHHHHHHHHHhhhhheE
Confidence            356689999999999999999987               88999999887788999999999999999999999999999


Q ss_pred             eeC--CceEEcCCCcEEEEeecCCceEeecccCcCCCCHHHHHhccccccccccCcCCccchHHHHHHHHHHHcCCCCcc
Q psy16142        344 WQD--TFIREYHSVDVSVAVNTDKGLFTPIVFDADKKGLVDISNDSRSLISFRRPVKFSEESNDVKTLAAKAKEGKLQPH  421 (426)
Q Consensus       344 ~~~--~~i~~~~~v~i~iAv~~~~GL~~pvi~~a~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~l~~~  421 (426)
                      |++  +.+.++++|||||||++++||++|||+|+|+||+.+|++                   +++++.++||+|+|+++
T Consensus        93 ~~~~~~~i~~~~~v~igiAv~~~~gL~vPvi~~a~~~sl~~i~~-------------------~~~~l~~~ar~gkl~~~  153 (242)
T d1b5sa_          93 IDDETEEIIQKHYYNIGIAADTDRGLLVPVIKHADRKPIFALAQ-------------------EINELAEKARDGKLTPG  153 (242)
T ss_dssp             BCTTSSCBCCCSSCCEEECEECSSCEECCEETTGGGCCHHHHHH-------------------HHHHHHHHHHTTCCCGG
T ss_pred             EcCCCCEEEEeeeeEEEEEecCCCceEeeeecccccccHHHHHH-------------------HHHHHHHHHHcCCCChh
Confidence            987  468899999999999999999999999999999999999                   99999999999999999


Q ss_pred             cccC
Q psy16142        422 EFQV  425 (426)
Q Consensus       422 e~~~  425 (426)
                      ||+|
T Consensus       154 dl~g  157 (242)
T d1b5sa_         154 EMKG  157 (242)
T ss_dssp             GGSC
T ss_pred             hccC
Confidence            9998

>d1y8ob1 b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoamide acetyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=1.7e-20  Score=154.68  Aligned_cols=87  Identities=67%  Similarity=1.077  Sum_probs=79.9

Q ss_pred             cccCceEeccCCCCCcccceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEE
Q psy16142         79 REGNDRVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIV  158 (426)
Q Consensus        79 v~~~~~i~mP~lg~s~d~g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~  158 (426)
                      ++.+..+.||.||.+|++|+|.+|++++||.|++||+||+|||||++++|+||++|+|.++++++|++.|++|++||+|.
T Consensus         2 ~p~~iei~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vETdK~~~ei~a~~~G~l~~i~v~eGd~~v~vG~~ia~i~   81 (102)
T d1y8ob1           2 YPPHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIV   81 (102)
T ss_dssp             CCSEEEEECCCSSTTCSEEEEEEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCSEETTCEEEEEE
T ss_pred             CCCCEEEECCCCCCCccEEEEEEEEeCCCCEEecCccEEEEEcCcEEEEEecCCcEEEEEEEEccCCEEEcCCCEEEEEe
Confidence            45678899999999999999999999999999999999999999999999999999999999999963599999999998


Q ss_pred             cCCcchh
Q psy16142        159 ENESDVA  165 (426)
Q Consensus       159 ~~~~~~~  165 (426)
                      ..+++..
T Consensus        82 ~~~~~~~   88 (102)
T d1y8ob1          82 EKEADIS   88 (102)
T ss_dssp             SSGGGGG
T ss_pred             cCCcccc
Confidence            7665543

>d1ghja_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Azotobacter vinelandii [TaxId: 354]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.78  E-value=8.6e-20  Score=143.76  Aligned_cols=77  Identities=29%  Similarity=0.544  Sum_probs=74.1

Q ss_pred             ceEeccCCCCCcccceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEcC
Q psy16142         83 DRVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVEN  160 (426)
Q Consensus        83 ~~i~mP~lg~s~d~g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~  160 (426)
                      ..++||.||.+++++++.+|++++||.|++||.||+|||||++++|+||++|+|.++++++|+ .|++|++|++|++.
T Consensus         2 iei~~P~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vEt~K~~~ei~a~~~G~v~~i~v~~Gd-~v~~G~~l~~i~~~   78 (79)
T d1ghja_           2 IDIKAPTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGD-TVLSGELLGKLTEG   78 (79)
T ss_dssp             EEEECCCCCSSCSCEEECCCSSCTTSEECSSCEEEEEECSSCEEEEECSSCEEEEEESSCTTC-EECTTCEEEEECCC
T ss_pred             cEEEcCCCCCCccEEEEEEEEcCCCCEEeeCccEEEEEcCceEEEEEeceeEEEEEEEcCCCC-EECCCCEEEEEeCC
Confidence            468999999999999999999999999999999999999999999999999999999999999 89999999999764

>d1k8ma_ b.84.1.1 (A:) Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=4.4e-19  Score=142.09  Aligned_cols=79  Identities=22%  Similarity=0.326  Sum_probs=75.2

Q ss_pred             CceEeccCCCCCcccceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEcCC
Q psy16142         82 NDRVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENE  161 (426)
Q Consensus        82 ~~~i~mP~lg~s~d~g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~  161 (426)
                      -..++||.||.+++++++.+|++++||.|++||.||+|||||++++|+||++|+|.++++++|+ .|++|++|+.|+.++
T Consensus         4 ~~~~~lP~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEt~K~~~~v~A~~~G~I~~i~v~~G~-~v~~G~~l~~i~~~~   82 (87)
T d1k8ma_           4 VVQFKLSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDD-IAYVGKPLVDIETEA   82 (87)
T ss_dssp             CEEEECCSSCTTSCCEEEEEECCCTTCEECSSSCCEEEECSSCEEECCCSSCEEEEEECCCSSC-EECTTSEEEEEECSC
T ss_pred             cEEEECCCCCCCceeEEEEEEEcCCCCEEecCCEEEEEEccCceEEEEeCCCEEEEEEEeCCCC-EECCCCEEEEEEcCC
Confidence            3568999999999999999999999999999999999999999999999999999999999999 899999999997654

>d1pmra_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Escherichia coli [TaxId: 562]

Probab=99.75  E-value=9.9e-20  Score=143.65  Aligned_cols=76  Identities=28%  Similarity=0.501  Sum_probs=73.4

Q ss_pred             ceEeccCCCCCcccceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEc
Q psy16142         83 DRVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVE  159 (426)
Q Consensus        83 ~~i~mP~lg~s~d~g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~  159 (426)
                      ..+.||.|+.+++++++.+|++++||.|++||+||+|||||++++|+||++|+|.++++++|+ .|++|++|++|++
T Consensus         3 iei~~P~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vEtdK~~~ev~a~~~G~l~~i~v~~Gd-~v~~G~~l~~i~e   78 (80)
T d1pmra_           3 VDILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGT-TVTSRQILGRLRE   78 (80)
T ss_dssp             CCEECCCCCSCCSCEECCBCCCCTTCCBSSSCCBCBCCSSSCCCCCBCCSBCCCCBCTTCTTC-EECSSSEEEBCCC
T ss_pred             eEEECCCCCCCccEEEEEEEEeCCCCEEcCCCEEEEEEcCceEEEEeccCCEEEEEEEeCCCC-EECCCCEEEEEeC
Confidence            568999999999999999999999999999999999999999999999999999999999999 8999999999964

>d1laba_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.74  E-value=6.8e-20  Score=144.65  Aligned_cols=76  Identities=33%  Similarity=0.624  Sum_probs=73.2

Q ss_pred             eEeccCCCCCcccceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEcC
Q psy16142         84 RVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVEN  160 (426)
Q Consensus        84 ~i~mP~lg~s~d~g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~  160 (426)
                      .++||.||.+++++++.+|++++||.|++||+||+|||||++++|+||++|+|.++++++|+ .|++|++|+.|+.+
T Consensus         3 ei~~P~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vEt~K~~~ei~A~~~G~v~~i~v~~Gd-~v~~G~~l~~ie~~   78 (80)
T d1laba_           3 EFKLPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGT-VATVGQTLITLDAP   78 (80)
T ss_dssp             CSSCSCSSSTTCSEEEEECCCSSCCEECSSCCCEEEECSSCEEEECCSSCEECCCBSSCSSS-EECSSSCSBCBBCS
T ss_pred             EEECCCCCCCceeEEEEEEEeCCCCEEeeCcCEEEEEcccEEEEEEcCCCEEEEEEEeCCCC-EECCCCEEEEEecC
Confidence            57899999999999999999999999999999999999999999999999999999999999 89999999999764

>d1gjxa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Neisseria meningitidis [TaxId: 487]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.67  E-value=4.5e-18  Score=134.47  Aligned_cols=77  Identities=25%  Similarity=0.389  Sum_probs=72.5

Q ss_pred             ceEeccCCCCCcccceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEcCC
Q psy16142         83 DRVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENE  161 (426)
Q Consensus        83 ~~i~mP~lg~s~d~g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~  161 (426)
                      ..++||.+| .++++++.+|++++||.|++||+||+|||||++++++||.+|+|.++++++|+ .|++|++|+.|+.++
T Consensus         3 iei~~P~lg-~~~~~~v~~w~v~~Gd~V~~gd~l~~iEt~K~~~~i~a~~~G~i~~i~v~~G~-~v~~G~~l~~ie~~g   79 (81)
T d1gjxa_           3 VELKVPDIG-GHENVDIIAVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGD-KISEGGLIVVVEAEG   79 (81)
T ss_dssp             EECCCCCCS-SCSSEEEEEECCCSSCBCCSSCCCEEEECSSCEEEECCCCSSBBCCCCCCSSC-EECSSSCCCEECCSC
T ss_pred             EEEECCCCC-CCcEEEEEEEEeCCCCEECCCCEEEEEEcCCcEEEEEeeeeEEEEEEEeCCCC-EECCCCEEEEEeccc
Confidence            457999999 57899999999999999999999999999999999999999999999999999 899999999997644

>d1qjoa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.66  E-value=3e-17  Score=129.31  Aligned_cols=76  Identities=26%  Similarity=0.391  Sum_probs=71.0

Q ss_pred             ceEeccCCCCCcccceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEcCC
Q psy16142         83 DRVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENE  161 (426)
Q Consensus        83 ~~i~mP~lg~s~d~g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~  161 (426)
                      ..+++|++|.  +++++.+|++++||.|++||+|++|||||++++|+||++|+|.++++++|+ .|++|++|+.|+.++
T Consensus         3 ~ei~~P~lG~--~~~~v~~~~v~~Gd~V~~g~~l~~iEt~K~~~~v~a~~~G~v~~i~v~~G~-~V~~G~~l~~ie~eg   78 (80)
T d1qjoa_           3 KEVNVPDIGG--DEVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGD-KVKTGSLIMIFEVEG   78 (80)
T ss_dssp             EEECCCCCSS--SCEEEEECCCCTTCEECBTSEEEEEESSSSCEEEEBSSCEEEEECCCCTTC-EECTTCCCEEEESCC
T ss_pred             eEEECCCCCC--CeEEEEEEEeCCCCEECCCCEEEEEEcCcccceEeCCeeEEEEEEEeCCCC-EECCCCEEEEEecCc
Confidence            4688999986  478999999999999999999999999999999999999999999999999 899999999998654

>d1iyua_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.65  E-value=5.6e-17  Score=127.46  Aligned_cols=75  Identities=20%  Similarity=0.361  Sum_probs=70.1

Q ss_pred             ceEeccCCCCCcccceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEcCC
Q psy16142         83 DRVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENE  161 (426)
Q Consensus        83 ~~i~mP~lg~s~d~g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~  161 (426)
                      ..++||.+|.   ++++.+|++++||.|++||.|++||+||+.++|+||++|+|.++++++|+ .|++|++|+.|+..+
T Consensus         2 ~~i~~P~~g~---~g~i~~~~v~~Gd~V~~gd~l~~iE~~K~~~~i~a~~~G~v~~i~v~~G~-~V~~G~~l~~ie~~~   76 (79)
T d1iyua_           2 EIIRVPDIGG---DGEVIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGD-KLKEGDAIIELEPAA   76 (79)
T ss_dssp             EEEECCCCSS---EEEEEEECCCTTCBCCSSSEEEEEECSSCEEEEECSSSSEEEEESCCTTC-EEETTSEEEEEECCC
T ss_pred             CEEECCCCCC---CEEEEEEEecCCCEEecCceEEEEEecCcEEEEEeccccEEEEEeeCCCC-EECCCCEEEEEecCc
Confidence            3578999984   69999999999999999999999999999999999999999999999999 899999999997653

>d1q23a_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Chloramphenicol acetyltransferase, CAT
species: Escherichia coli [TaxId: 562]

Probab=99.63  E-value=5.3e-16  Score=143.81  Aligned_cols=88  Identities=15%  Similarity=0.039  Sum_probs=84.8

Q ss_pred             cccHHHHHHHHHHHHhhhcccccceeeCCceEEcCCCcEEEEeecCCceEeecccCcCCCCHHHHHhccccccccccCcC
Q psy16142        319 KLSINDFIIKATALASRRVPEANSSWQDTFIREYHSVDVSVAVNTDKGLFTPIVFDADKKGLVDISNDSRSLISFRRPVK  398 (426)
Q Consensus       319 ~~s~~~~~~ka~~~al~~~p~~n~~~~~~~i~~~~~v~i~iAv~~~~GL~~pvi~~a~~~~l~~i~~~~~~~~~~~~~~~  398 (426)
                      ++|++++++||+++||++||+||++|+++.+++|+++|+|+||++++||++|+|++++++++.+|++             
T Consensus        48 ~~sf~~~~~~av~~Al~~~P~~n~~~~~~~i~~~~~i~i~iav~~~~gl~v~~i~~~~~~~~~ef~~-------------  114 (214)
T d1q23a_          48 KHKFYPAFIHILARLMNAHPEFRMAMKDGELVIWDSVHPCYTVFHEQTETFSSLWSEYHDDFRQFLH-------------  114 (214)
T ss_dssp             TCCHHHHHHHHHHHHHTTCGGGSEEEETTEEEEESCCEEEEEEEETTTTEEEEEECCCCSSHHHHHH-------------
T ss_pred             CCCcHHHHHHHHHHHHHhChHhheEEcCCceeEcCccCeEEEEEcCCCeEEeEEecCchhhHHHHHH-------------
Confidence            6899999999999999999999999999999999999999999999999999999999999999999             


Q ss_pred             CccchHHHHHHHHHHHcCC-CCcccccC
Q psy16142        399 FSEESNDVKTLAAKAKEGK-LQPHEFQV  425 (426)
Q Consensus       399 ~~~~~~~~~~l~~~a~~~~-l~~~e~~~  425 (426)
                            ++.++.+++++|+ |.++|++|
T Consensus       115 ------~~~~~~~~~~~~~~l~~~~~~~  136 (214)
T d1q23a_         115 ------IYSQDVACYGENLAYFPKGFIE  136 (214)
T ss_dssp             ------HHHHHHHHHTTCCSSSTTCCCS
T ss_pred             ------HHHHHHHHHHhCCCCCCccccC
Confidence                  9999999999876 99999886

>d3claa_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Chloramphenicol acetyltransferase, CAT
species: Escherichia coli [TaxId: 562]

Probab=99.63  E-value=5.4e-16  Score=143.53  Aligned_cols=89  Identities=13%  Similarity=0.076  Sum_probs=84.1

Q ss_pred             CcccHHHHHHHHHHHHhhhcccccceeeCCceEEcCCCcEEEEeecCCceEeecccCcCCCCHHHHHhccccccccccCc
Q psy16142        318 AKLSINDFIIKATALASRRVPEANSSWQDTFIREYHSVDVSVAVNTDKGLFTPIVFDADKKGLVDISNDSRSLISFRRPV  397 (426)
Q Consensus       318 ~~~s~~~~~~ka~~~al~~~p~~n~~~~~~~i~~~~~v~i~iAv~~~~GL~~pvi~~a~~~~l~~i~~~~~~~~~~~~~~  397 (426)
                      .++|++++++||+++||++||++|++|+++.|++|+++|+|+||++++||++|+|++++++++.+|++            
T Consensus        46 ~~~sf~~~~~~a~~~Al~~~P~~n~~~~~~~i~~~~~i~~~~aV~~~~gl~vp~i~~~~~~~l~~f~~------------  113 (213)
T d3claa_          46 SAYKFYPVMIYLIAQAVNQFDELRMAIKDDELIVWDSVDPQFTVFHQETETFSALSCPYSSDIDQFMV------------  113 (213)
T ss_dssp             SSCCHHHHHHHHHHHHHTTCGGGSEEEETTEEEEESCCEEEEEEEETTTTEEEEEECCCCSSHHHHHH------------
T ss_pred             cCCCeeHHHHHHHHHHHHhChHhhhEeccCeEEEecccceEEEEEcCCCeEEeeEecCCCCCHHHHHH------------
Confidence            47899999999999999999999999999999999999999999999999999999999999999999            


Q ss_pred             CCccchHHHHHHHHHHHcCC-CCcccccC
Q psy16142        398 KFSEESNDVKTLAAKAKEGK-LQPHEFQV  425 (426)
Q Consensus       398 ~~~~~~~~~~~l~~~a~~~~-l~~~e~~~  425 (426)
                             ++++++++||+|+ |.+++..|
T Consensus       114 -------~~~~~~~~ar~~~~~~~~~~~~  135 (213)
T d3claa_         114 -------NYLSVMERYKSDTKLFPQGVTP  135 (213)
T ss_dssp             -------HHHHHHHHHTTCCSSSTTSSCC
T ss_pred             -------HHHHHHHHHHhCCCCCccccCC
Confidence                   9999999999986 67766554

>d1dpba_ c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Dihydrolipoamide acetyltransferase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.58  E-value=7.7e-17  Score=152.22  Aligned_cols=98  Identities=27%  Similarity=0.339  Sum_probs=87.1

Q ss_pred             ccccchhhhHHHHHHHHHh--------cCCcEEEecCcccccccceeeeCCccchhhhccccccccccccCceE--eccC
Q psy16142         20 FLLYLLPWRWEPLLAGLRK--------KGGTVSISNLGMFGIKNFSAIINPPQACILAVGSLSQRLVREGNDRV--ALPA   89 (426)
Q Consensus        20 ~~l~~i~~e~~~L~~kar~--------~gGtfTIsn~G~~G~~~~tpIInppq~aIlgvg~~~~~p~v~~~~~i--~mP~   89 (426)
                      ++|.+|+.++++|+.+||+        +||||||||+|++|+.+|+|||||||+||+|+|+++++|++.++...  ++..
T Consensus       130 ~sl~~i~~~~~~l~~~ar~~~l~~~d~~ggTfTiSNlG~~G~~~~tpiInppq~aIlgvG~i~~~pv~~~~~i~~r~~m~  209 (243)
T d1dpba_         130 KSLLQLAAEAAELAEKARSKKLGADAMQGACFTISSLGHIGGTAFTPIVNAPEVAILGVSKASMQPVWDGKAFQPRLMLP  209 (243)
T ss_dssp             SCHHHHHHHHHHHHHHHHTTCCCGGGGSCCSEEEEECTTTCCSCCCCCCCTTSSEEEEECCCEEEEEECSSSEEEEEEEE
T ss_pred             hhHHHHHHHHHHHHHHhhhcccccccccCceeEEeccCCccceeEEeeeccccceeeecccceeeEEEECCEEEEEEEEE
Confidence            8999999999999999998        99999999999999999999999999999999999999998776443  3444


Q ss_pred             CCCCcc-----cceeeecccccCCccccCcchh
Q psy16142         90 LSPTME-----MGTIVSWAKKEGDKLNEGDLLA  117 (426)
Q Consensus        90 lg~s~d-----~g~i~~w~v~vGd~Ve~gd~L~  117 (426)
                      +++++|     |+...+|+....+.+|.+..|+
T Consensus       210 ltls~DHRvidGa~aa~FL~~l~~~lE~P~~ll  242 (243)
T d1dpba_         210 LSLSYDCRVINGAAAARFTKRLGDLLADIRAIL  242 (243)
T ss_dssp             EEEEEETTTSCHHHHHHHHHHHHHHHHCGGGGG
T ss_pred             EEEEeecccccHHHHHHHHHHHHHHHhCHHHHh
Confidence            555555     8899999999999999887765

>d1scza_ c.43.1.1 (A:) Dihydrolipoamide succinyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Dihydrolipoamide succinyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.53  E-value=1.8e-16  Score=148.76  Aligned_cols=98  Identities=22%  Similarity=0.285  Sum_probs=86.7

Q ss_pred             ccccchhhhHHHHHHHHHh--------cCCcEEEecCcccccccceeeeCCccchhhhccccccccccccCceE--eccC
Q psy16142         20 FLLYLLPWRWEPLLAGLRK--------KGGTVSISNLGMFGIKNFSAIINPPQACILAVGSLSQRLVREGNDRV--ALPA   89 (426)
Q Consensus        20 ~~l~~i~~e~~~L~~kar~--------~gGtfTIsn~G~~G~~~~tpIInppq~aIlgvg~~~~~p~v~~~~~i--~mP~   89 (426)
                      ++|.+|+.++++|+.++|+        +||||||||+|++|..+|+|||||||+||+|+|+++++|++.++...  ++..
T Consensus       118 ~sl~eia~~~~~l~~~ar~~~L~~~d~~ggTfTISNlG~~g~~~~tpii~ppq~aIl~vG~i~~~pv~~~g~i~~r~~~~  197 (233)
T d1scza_         118 LGMADIEKKIKELAVKGRDGKLTVEDLTGGNFTITNGGVFGSLMSTPIINPPQSAILGMHAIKDRPMAVNGQVEILPMMY  197 (233)
T ss_dssp             CCHHHHHHHHHHHHHHTTTTCCCHHHHSCCSEEEEEGGGGTCCCCCCCCCTTCSEEEEEEEEEEEEEEETTEEEEEEEEE
T ss_pred             CCHHHHHHHHHHHHHHhhcCCCCHHHhCCCcEEEEcCccccceeeeeecCCCCceEEecccceeeccccCCeEEEEEEeE
Confidence            8999999999999999999        99999999999999999999999999999999999999988776432  3334


Q ss_pred             CCCCcc-----cceeeecccccCCccccCcchh
Q psy16142         90 LSPTME-----MGTIVSWAKKEGDKLNEGDLLA  117 (426)
Q Consensus        90 lg~s~d-----~g~i~~w~v~vGd~Ve~gd~L~  117 (426)
                      +++++|     |+...+|+....+.+|.++.|+
T Consensus       198 lsls~DHRviDGa~aa~Fl~~l~~~lE~P~~ll  230 (233)
T d1scza_         198 LALSYDHRLIDGRESVGFLVTIKELLEDPTRLL  230 (233)
T ss_dssp             EEEEEETTTCCHHHHHHHHHHHHHHHHCTTHHH
T ss_pred             EEEEhhcchhccHHHHHHHHHHHHHHhCHHHHh
Confidence            555544     8899999999999999988775

>d1b5sa_ c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Dihydrolipoamide acetyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.48  E-value=1.4e-15  Score=143.44  Aligned_cols=98  Identities=24%  Similarity=0.375  Sum_probs=87.7

Q ss_pred             ccccchhhhHHHHHHHHHh--------cCCcEEEecCcccccccceeeeCCccchhhhccccccccccccCceE--eccC
Q psy16142         20 FLLYLLPWRWEPLLAGLRK--------KGGTVSISNLGMFGIKNFSAIINPPQACILAVGSLSQRLVREGNDRV--ALPA   89 (426)
Q Consensus        20 ~~l~~i~~e~~~L~~kar~--------~gGtfTIsn~G~~G~~~~tpIInppq~aIlgvg~~~~~p~v~~~~~i--~mP~   89 (426)
                      ++|.+|+.++++++.++|+        +||||||||+|++|..+|+|||||||+||+|+|++.++|++.++...  ++..
T Consensus       129 ~sl~~i~~~~~~l~~~ar~gkl~~~dl~ggtftisnlG~~G~~~ftpii~~pq~ail~vG~i~~~pv~~dg~i~~r~~m~  208 (242)
T d1b5sa_         129 KPIFALAQEINELAEKARDGKLTPGEMKGASCTITNIGSAGGQWFTPVINHPEVAILGIGRIAEKPIVRDGEIVAAPMLA  208 (242)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCCCGGGGSCCSCEEEECTTTCCSCCCCCCCTTCCEEEEECCCEEEEEECSSSEEEEEEEE
T ss_pred             ccHHHHHHHHHHHHHHHHcCCCChhhccCcceEEeecCCCCccceecccccccceEEeccceEEEEEEECCeEEEEEEEE
Confidence            8999999999999999999        99999999999999999999999999999999999999998877543  4444


Q ss_pred             CCCCcc-----cceeeecccccCCccccCcchh
Q psy16142         90 LSPTME-----MGTIVSWAKKEGDKLNEGDLLA  117 (426)
Q Consensus        90 lg~s~d-----~g~i~~w~v~vGd~Ve~gd~L~  117 (426)
                      |++++|     |+...+|+..+.+.+|.++.|+
T Consensus       209 lslt~DHRviDGa~aa~Fl~~l~~~lE~P~~ll  241 (242)
T d1b5sa_         209 LSLSFDHRMIDGATAQKALNHIKRLLSDPELLL  241 (242)
T ss_dssp             EEEEECTTTSCSHHHHHHHHHHHHHHHCGGGTT
T ss_pred             EEEEEEcchhChHHHHHHHHHHHHHHhCHHHHh
Confidence            555544     9999999999999999988775

>d1dcza_ b.84.1.1 (A:) Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S) {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S)
species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]

Probab=99.47  E-value=1.4e-14  Score=112.93  Aligned_cols=60  Identities=28%  Similarity=0.410  Sum_probs=59.0

Q ss_pred             ceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEE
Q psy16142         97 GTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCII  157 (426)
Q Consensus        97 g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i  157 (426)
                      |++.+|++++||.|++||.|+.+|+||+.++|+||++|+|.++++++|+ .|..|++|+.|
T Consensus        17 G~v~~~~V~~Gd~V~~G~~l~~vE~~K~~~~i~ap~~G~V~~i~v~~G~-~V~~G~~L~~i   76 (77)
T d1dcza_          17 GTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERD-AVQGGQGLIKI   76 (77)
T ss_dssp             CEEEEECCCTTCEECTTSEEEEEEETTEEEEEECSSSEEEEEECCCTTC-BCCBTSEEEEE
T ss_pred             cEEEEEEcCCCCEEeCCCeEEEEEccCccEEEEeCCCEEEEEEeeCCCC-EECCCCEEEEe
Confidence            8999999999999999999999999999999999999999999999999 89999999987

>d1w85i_ a.9.1.1 (I:) E3/E1 binding domain of dihydrolipoyl acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: All alpha proteins
fold: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
superfamily: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
family: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
domain: E3/E1 binding domain of dihydrolipoyl acetyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.42  E-value=3.2e-14  Score=97.44  Aligned_cols=40  Identities=33%  Similarity=0.547  Sum_probs=37.6

Q ss_pred             ccccChHHHHHHHHcCCCCcCccCCCCCCCcccchhhhhhh
Q psy16142        220 RVYASPLAKRLAAEKGLDLSSIGAGSGLFGSITSADLSKAS  260 (426)
Q Consensus       220 ~~~asP~aR~lA~e~gIDl~~v~~gtG~~GrI~~~DV~~~~  260 (426)
                      ++.|||+||+||+|+||||++| .|||++|||+++||+++.
T Consensus         1 rv~asP~arkla~e~gidl~~i-~GTG~~GRItk~DV~~~i   40 (42)
T d1w85i_           1 RVIAMPSVRKYAREKGVDIRLV-QGTGKNGRVLKEDIDAFL   40 (42)
T ss_dssp             CCCCCHHHHHHHHHTTCCTTTS-CCCSGGGCCCHHHHHHHH
T ss_pred             CcccCHHHHHHHHHcCCCHHHC-ccCCCCCcEeHHHHHHHh
Confidence            3679999999999999999999 999999999999999874

>d1bdoa_ b.84.1.1 (A:) Biotinyl domain of acetyl-CoA carboxylase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Biotinyl domain of acetyl-CoA carboxylase
species: Escherichia coli [TaxId: 562]

Probab=99.34  E-value=2.2e-13  Score=106.79  Aligned_cols=58  Identities=28%  Similarity=0.348  Sum_probs=55.8

Q ss_pred             eecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEE
Q psy16142        100 VSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIV  158 (426)
Q Consensus       100 ~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~  158 (426)
                      ..+++++||.|++||.||.||+||+.++|.||.+|+|.++++++|+ .|..|++|+.|+
T Consensus        23 ~~~~V~~Gd~V~~Gq~l~~iEamKm~~~i~a~~~G~v~~i~v~~G~-~V~~G~~L~~ie   80 (80)
T d1bdoa_          23 AKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQ-PVEFDEPLVVIE   80 (80)
T ss_dssp             SCCSCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEECSCTTC-EECTTCEEEEEC
T ss_pred             CCeEccCCCeEeCCCEEEEEEcCcccEEEEcCCCeEEEEEEeCCCC-EECCCCEEEEEC
Confidence            4788999999999999999999999999999999999999999999 899999999984

>d2cyua1 a.9.1.1 (A:2-40) E3-binding domain of dihydrolipoamide succinyltransferase {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
superfamily: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
family: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
domain: E3-binding domain of dihydrolipoamide succinyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.33  E-value=2.3e-13  Score=91.78  Aligned_cols=37  Identities=43%  Similarity=0.613  Sum_probs=35.3

Q ss_pred             cChHHHHHHHHcCCCCcCccCCCCCCCcccchhhhhhh
Q psy16142        223 ASPLAKRLAAEKGLDLSSIGAGSGLFGSITSADLSKAS  260 (426)
Q Consensus       223 asP~aR~lA~e~gIDl~~v~~gtG~~GrI~~~DV~~~~  260 (426)
                      .||+||+||+|+|||+++| +|||++|||+++||+++.
T Consensus         1 iSP~arkla~e~gidl~~i-~GtG~~GRI~k~Dv~~~i   37 (39)
T d2cyua1           1 LSPAIRRLLAEHNLDASAI-KGTGVGGRLTREDVEKHL   37 (39)
T ss_dssp             CCCTHHHHHHHHTCCGGGS-CCCSSSSCCCHHHHHHHS
T ss_pred             CCHHHHHHHHHcCCCHHHC-cCCCCCCcEeHHHHHHHH
Confidence            4899999999999999999 999999999999999874

>d1q23a_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Chloramphenicol acetyltransferase, CAT
species: Escherichia coli [TaxId: 562]

Probab=97.34  E-value=1.4e-05  Score=72.41  Aligned_cols=92  Identities=12%  Similarity=0.087  Sum_probs=64.7

Q ss_pred             ccccccccchhhhHHHHHHHHHh---------cCCcEEEecCcccccccceeeeCCc---cchhhhccccccccccccCc
Q psy16142         16 AEWHFLLYLLPWRWEPLLAGLRK---------KGGTVSISNLGMFGIKNFSAIINPP---QACILAVGSLSQRLVREGND   83 (426)
Q Consensus        16 ~~~~~~l~~i~~e~~~L~~kar~---------~gGtfTIsn~G~~G~~~~tpIInpp---q~aIlgvg~~~~~p~v~~~~   83 (426)
                      ..++.++.++.+++.++..++++         +||||||||+|.+|.+.++..++.+   .++++++|+....     +.
T Consensus       103 ~~~~~~~~ef~~~~~~~~~~~~~~~~l~~~~~~~~tftiSnlg~~~ft~~~~~~~~~~~~~vpii~~Gk~~~~-----~~  177 (214)
T d1q23a_         103 SEYHDDFRQFLHIYSQDVACYGENLAYFPKGFIENMFFVSANPWVSFTSFDLNVANMDNFFAPVFTMGKYYTQ-----GD  177 (214)
T ss_dssp             CCCCSSHHHHHHHHHHHHHHHTTCCSSSTTCCCSSEEEEEECTTCCCSEEEEEESCCTTCCSCEEEECCCEEE-----TT
T ss_pred             cCchhhHHHHHHHHHHHHHHHHhCCCCCCccccCCEEEEEcCCCccccCccCCCCCCccceeeEEEecceEEE-----CC
Confidence            45669999999999999999887         7999999999999977666555544   3557777765432     23


Q ss_pred             eEecc----CCCCCcccceeeecccccCCcccc
Q psy16142         84 RVALP----ALSPTMEMGTIVSWAKKEGDKLNE  112 (426)
Q Consensus        84 ~i~mP----~lg~s~d~g~i~~w~v~vGd~Ve~  112 (426)
                      ...||    .-+.-+||+.+.+|+.+..+.+++
T Consensus       178 r~~mplsls~dHrvvDG~~~a~Fl~~lq~~le~  210 (214)
T d1q23a_         178 KVLMPLAIQVHHAVCDGFHVGRMLNELQQYCDE  210 (214)
T ss_dssp             EEEEEEEEEEETTTCCHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEEEEecccccchHHHHHHHHHHHHHHhh
Confidence            44454    223334577777777777666654

>d3claa_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Chloramphenicol acetyltransferase, CAT
species: Escherichia coli [TaxId: 562]

Probab=96.59  E-value=5.6e-05  Score=68.24  Aligned_cols=97  Identities=8%  Similarity=0.061  Sum_probs=59.9

Q ss_pred             ccccccccchhhhHHHHHHHHHh--------cCCcEEEecCcccccccceeeeCCccchhhhccccccccc-cccCceEe
Q psy16142         16 AEWHFLLYLLPWRWEPLLAGLRK--------KGGTVSISNLGMFGIKNFSAIINPPQACILAVGSLSQRLV-REGNDRVA   86 (426)
Q Consensus        16 ~~~~~~l~~i~~e~~~L~~kar~--------~gGtfTIsn~G~~G~~~~tpIInppq~aIlgvg~~~~~p~-v~~~~~i~   86 (426)
                      ..+..++.++.+++++++.++|+        .+|+.++ |+|++|...|++++++|+.......++...-. ...+....
T Consensus       102 ~~~~~~l~~f~~~~~~~~~~ar~~~~~~~~~~~~~~~~-~is~l~~~~Ft~i~~~~~~~~~~~~Pii~~Gk~~~~~~r~~  180 (213)
T d3claa_         102 CPYSSDIDQFMVNYLSVMERYKSDTKLFPQGVTPENHL-NISALPWVNFDSFNLNVANFTDYFAPIITMAKYQQEGDRLL  180 (213)
T ss_dssp             CCCCSSHHHHHHHHHHHHHHHTTCCSSSTTSSCCSSEE-EEEEETTCCCSCCCCCCSCCTTCCSCEEEEECCEEETTEEE
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHhCCCCCccccCCCcEE-EeeccCceEeecccCCcccCccccccEEecCccEEECCEEE
Confidence            55679999999999999999998        2343333 66777777899999999887544332211111 11122233


Q ss_pred             cc----CCCCCcccceeeecccccCCccccC
Q psy16142         87 LP----ALSPTMEMGTIVSWAKKEGDKLNEG  113 (426)
Q Consensus        87 mP----~lg~s~d~g~i~~w~v~vGd~Ve~g  113 (426)
                      ||    .-+.-+||+.+.+|+....+.++.+
T Consensus       181 m~lsls~dHrviDG~~aa~Fl~~lk~~le~p  211 (213)
T d3claa_         181 LPLSVQVHHAVCDGFHVARFINRLQELCNSK  211 (213)
T ss_dssp             EEEEEEEETTTCCHHHHHHHHHHHHHHHTSC
T ss_pred             EEEEEEecccccccHHHHHHHHHHHHHHhCc
Confidence            43    2233344667777777766665543

>d1dcza_ b.84.1.1 (A:) Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S) {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S)
species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]

Probab=96.31  E-value=0.0019  Score=48.65  Aligned_cols=37  Identities=27%  Similarity=0.384  Sum_probs=33.2

Q ss_pred             cceeecCCCeEEEEEeecCCCccccCCcEEEEEEcCCc
Q psy16142        125 TMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENES  162 (426)
Q Consensus       125 ~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~~  162 (426)
                      +-.|.||..|+|.++++++|+ .|..|++|+.++....
T Consensus         8 ~~~v~ap~~G~v~~~~V~~Gd-~V~~G~~l~~vE~~K~   44 (77)
T d1dcza_           8 EGEIPAPLAGTVSKILVKEGD-TVKAGQTVLVLEAMKM   44 (77)
T ss_dssp             SSEEEBSSSCEEEEECCCTTC-EECTTSEEEEEEETTE
T ss_pred             CCEEECCCCcEEEEEEcCCCC-EEeCCCeEEEEEccCc
Confidence            347999999999999999999 7999999999987644

>d1onla_ b.84.1.1 (A:) Protein H of glycine cleavage system {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Protein H of glycine cleavage system
species: Thermus thermophilus [TaxId: 274]

Probab=95.74  E-value=0.0022  Score=53.01  Aligned_cols=38  Identities=18%  Similarity=0.357  Sum_probs=35.4

Q ss_pred             cccCCccccCcchhhhhcccccceeecCCCeEEEEEee
Q psy16142        104 KKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILV  141 (426)
Q Consensus       104 v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v  141 (426)
                      .++|+.|++|+.++.||+.|+..+|.||.+|+|.++.-
T Consensus        43 p~~g~~v~~g~~~~~iEs~k~~~~i~sPvsG~Vv~vN~   80 (127)
T d1onla_          43 PEVGRVVEKGEAVAVVESVKTASDIYAPVAGEIVEVNL   80 (127)
T ss_dssp             BCTTCEECTTCEEEEEEESSBEEEEECSSSEEEEEECT
T ss_pred             CCCCchhcCCCceEEEeeccceeeccCCccceEEEEhh
Confidence            48999999999999999999999999999999988853

>d1hpca_ b.84.1.1 (A:) Protein H of glycine cleavage system {Pea (Pisum sativum) [TaxId: 3888]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Protein H of glycine cleavage system
species: Pea (Pisum sativum) [TaxId: 3888]

Probab=95.58  E-value=0.0026  Score=52.83  Aligned_cols=38  Identities=21%  Similarity=0.339  Sum_probs=35.4

Q ss_pred             cccCCccccCcchhhhhcccccceeecCCCeEEEEEee
Q psy16142        104 KKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILV  141 (426)
Q Consensus       104 v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v  141 (426)
                      .++|+.|++|+.++.||+.|+..+|.||.+|+|.++.-
T Consensus        44 p~~g~~v~~g~~~~~iEs~k~~~~i~sPv~G~vv~vN~   81 (131)
T d1hpca_          44 PEPGVSVTKGKGFGAVESVKATSDVNSPISGEVIEVNT   81 (131)
T ss_dssp             CCTTCEECBTSEEEEEEESSCEEEEEBSSCEEEEEECT
T ss_pred             CCCCccccCCCceEEEEeecccccccCCcchhheeehh
Confidence            48999999999999999999999999999999988853

>d1iyua_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Azotobacter vinelandii [TaxId: 354]

Probab=94.01  E-value=0.027  Score=42.15  Aligned_cols=30  Identities=13%  Similarity=0.349  Sum_probs=27.1

Q ss_pred             CCeEEEEEeecCCCccccCCcEEEEEEcCCc
Q psy16142        132 EEGYLAKILVPAGSKDVPIGKLVCIIVENES  162 (426)
Q Consensus       132 ~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~~  162 (426)
                      .+|+|.++++++|+ .|..|++|+.++....
T Consensus        11 ~~g~i~~~~v~~Gd-~V~~gd~l~~iE~~K~   40 (79)
T d1iyua_          11 GDGEVIELLVKTGD-LIEVEQGLVVLESAKA   40 (79)
T ss_dssp             SEEEEEEECCCTTC-BCCSSSEEEEEECSSC
T ss_pred             CCEEEEEEEecCCC-EEecCceEEEEEecCc
Confidence            57999999999999 8999999999987643

>d1vf7a_ f.46.1.1 (A:) Multidrug resistance protein MexA domain {Pseudomonas aeruginosa [TaxId: 287]}

class: Membrane and cell surface proteins and peptides
fold: HlyD-like secretion proteins
superfamily: HlyD-like secretion proteins
family: HlyD-like secretion proteins
domain: Multidrug resistance protein MexA domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.61  E-value=0.016  Score=50.86  Aligned_cols=40  Identities=23%  Similarity=0.251  Sum_probs=34.6

Q ss_pred             hhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEcC
Q psy16142        119 IETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVEN  160 (426)
Q Consensus       119 vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~  160 (426)
                      |+..+ .++|.|+.+|+|.+++|++|+ .|+.|++|+.|+..
T Consensus        10 i~a~~-~~~V~s~v~G~V~~v~V~~G~-~VkkGq~L~~ld~~   49 (237)
T d1vf7a_          10 TNAFR-IAEVRPQVNGIILKRLFKEGS-DVKAGQQLYQIDPA   49 (237)
T ss_dssp             CEESC-EEEECCSSCEEEEECCSCSSE-EECTTSEEEEECCH
T ss_pred             EEeeE-EEEEEeecCEEEEEEECCCcC-EECCCCEEEEEehH
Confidence            55544 467999999999999999999 89999999999653

>d1bdoa_ b.84.1.1 (A:) Biotinyl domain of acetyl-CoA carboxylase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Biotinyl domain of acetyl-CoA carboxylase
species: Escherichia coli [TaxId: 562]

Probab=93.57  E-value=0.018  Score=43.40  Aligned_cols=36  Identities=25%  Similarity=0.472  Sum_probs=31.6

Q ss_pred             ceeecCCCeEE-------EEEeecCCCccccCCcEEEEEEcCCc
Q psy16142        126 MGFETPEEGYL-------AKILVPAGSKDVPIGKLVCIIVENES  162 (426)
Q Consensus       126 ~ei~a~~~G~v-------~~i~v~~G~~~v~vG~~l~~i~~~~~  162 (426)
                      ..|.||..|++       .++++++|+ .|+.|++|+.++...-
T Consensus         5 ~~I~aPm~G~~~~~~~p~~~~~V~~Gd-~V~~Gq~l~~iEamKm   47 (80)
T d1bdoa_           5 HIVRSPMVGTFYRTPSPDAKAFIEVGQ-KVNVGDTLCIVEAMKM   47 (80)
T ss_dssp             EEEECSSSEEEESSSSTTSCCSCCTTC-EECTTCEEEEEEETTE
T ss_pred             CEEeCCCcEEEEecCCCCCCeEccCCC-eEeCCCEEEEEEcCcc
Confidence            46999999999       578999999 7999999999987543

>d1qjoa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Escherichia coli [TaxId: 562]

Probab=92.41  E-value=0.049  Score=40.80  Aligned_cols=29  Identities=14%  Similarity=0.279  Sum_probs=26.0

Q ss_pred             CeEEEEEeecCCCccccCCcEEEEEEcCCc
Q psy16142        133 EGYLAKILVPAGSKDVPIGKLVCIIVENES  162 (426)
Q Consensus       133 ~G~v~~i~v~~G~~~v~vG~~l~~i~~~~~  162 (426)
                      +|+|.++++++|+ .|..|++|+.++....
T Consensus        14 ~~~v~~~~v~~Gd-~V~~g~~l~~iEt~K~   42 (80)
T d1qjoa_          14 EVEVTEVMVKVGD-KVAAEQSLITVEGDKA   42 (80)
T ss_dssp             CEEEEECCCCTTC-EECBTSEEEEEESSSS
T ss_pred             eEEEEEEEeCCCC-EECCCCEEEEEEcCcc
Confidence            5799999999999 8999999999987644

>d1gjxa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Neisseria meningitidis [TaxId: 487]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Neisseria meningitidis [TaxId: 487]

Probab=92.14  E-value=0.055  Score=40.58  Aligned_cols=30  Identities=10%  Similarity=0.237  Sum_probs=26.7

Q ss_pred             CCeEEEEEeecCCCccccCCcEEEEEEcCCc
Q psy16142        132 EEGYLAKILVPAGSKDVPIGKLVCIIVENES  162 (426)
Q Consensus       132 ~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~~  162 (426)
                      .+|+|.++++++|+ .|..|++|+.++....
T Consensus        14 ~~~~v~~w~v~~Gd-~V~~gd~l~~iEt~K~   43 (81)
T d1gjxa_          14 ENVDIIAVEVNVGD-TIAVDDTLITLETDKA   43 (81)
T ss_dssp             SSEEEEEECCCSSC-BCCSSCCCEEEECSSC
T ss_pred             cEEEEEEEEeCCCC-EECCCCEEEEEEcCCc
Confidence            46889999999999 8999999999987654

>d1y8ob1 b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoamide acetyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.11  E-value=0.073  Score=41.74  Aligned_cols=30  Identities=17%  Similarity=0.270  Sum_probs=27.3

Q ss_pred             CCeEEEEEeecCCCccccCCcEEEEEEcCCc
Q psy16142        132 EEGYLAKILVPAGSKDVPIGKLVCIIVENES  162 (426)
Q Consensus       132 ~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~~  162 (426)
                      ..|+|.++++++|+ .|..|++|+.++.+..
T Consensus        18 ~eg~i~~w~v~~Gd-~V~~gd~l~~vETdK~   47 (102)
T d1y8ob1          18 TMGTVQRWEKKVGE-KLSEGDLLAEIETDKA   47 (102)
T ss_dssp             SEEEEEEECSCTTC-EECTTCEEEEEECSSC
T ss_pred             cEEEEEEEEeCCCC-EEecCccEEEEEcCcE
Confidence            57999999999999 8999999999987654

>d1k8ma_ b.84.1.1 (A:) Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.57  E-value=0.083  Score=40.19  Aligned_cols=30  Identities=17%  Similarity=0.255  Sum_probs=27.1

Q ss_pred             CCeEEEEEeecCCCccccCCcEEEEEEcCCc
Q psy16142        132 EEGYLAKILVPAGSKDVPIGKLVCIIVENES  162 (426)
Q Consensus       132 ~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~~  162 (426)
                      .+|+|.++++++|+ .|..|++|+.++....
T Consensus        17 ~eg~i~~w~v~~Gd-~V~~g~~l~~vEt~K~   46 (87)
T d1k8ma_          17 REVTVKEWYVKEGD-TVSQFDSICEVQSDKA   46 (87)
T ss_dssp             CCEEEEEECCCTTC-EECSSSCCEEEECSSC
T ss_pred             eeEEEEEEEcCCCC-EEecCCEEEEEEccCc
Confidence            47999999999999 8999999999987654

>d1laba_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=90.44  E-value=0.07  Score=39.94  Aligned_cols=30  Identities=23%  Similarity=0.522  Sum_probs=27.0

Q ss_pred             CCeEEEEEeecCCCccccCCcEEEEEEcCCc
Q psy16142        132 EEGYLAKILVPAGSKDVPIGKLVCIIVENES  162 (426)
Q Consensus       132 ~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~~  162 (426)
                      .+|+|.++++++|| .|..|++|+.++....
T Consensus        14 ~eg~i~~w~v~~Gd-~V~~gd~l~~vEt~K~   43 (80)
T d1laba_          14 HEGEIVKWFVKPGD-EVNEDDVLCEVQNDKA   43 (80)
T ss_dssp             CSEEEEECCCSSCC-EECSSCCCEEEECSSC
T ss_pred             eeEEEEEEEeCCCC-EEeeCcCEEEEEcccE
Confidence            47999999999999 8999999999987654

>d1ghja_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Azotobacter vinelandii [TaxId: 354]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Azotobacter vinelandii [TaxId: 354]

Probab=90.20  E-value=0.066  Score=39.98  Aligned_cols=31  Identities=19%  Similarity=0.206  Sum_probs=27.7

Q ss_pred             CCeEEEEEeecCCCccccCCcEEEEEEcCCcc
Q psy16142        132 EEGYLAKILVPAGSKDVPIGKLVCIIVENESD  163 (426)
Q Consensus       132 ~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~~~  163 (426)
                      .+|+|.++++++|+ .|..|++|+.++.+...
T Consensus        14 ~eg~i~~w~v~~Gd-~V~~gd~l~~vEt~K~~   44 (79)
T d1ghja_          14 ADGTVATWHKKPGE-AVKRDELIVDIETDKVV   44 (79)
T ss_dssp             SCEEECCCSSCTTS-EECSSCEEEEEECSSCE
T ss_pred             cEEEEEEEEcCCCC-EEeeCccEEEEEcCceE
Confidence            57999999999999 89999999999876543

>d1pmra_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Escherichia coli [TaxId: 562]

Probab=88.63  E-value=0.038  Score=41.53  Aligned_cols=30  Identities=13%  Similarity=0.141  Sum_probs=26.7

Q ss_pred             CCeEEEEEeecCCCccccCCcEEEEEEcCCc
Q psy16142        132 EEGYLAKILVPAGSKDVPIGKLVCIIVENES  162 (426)
Q Consensus       132 ~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~~  162 (426)
                      .+|+|.++++++|+ .|..|++|+.++.+..
T Consensus        15 ~eg~i~~w~v~~Gd-~V~~gd~l~~vEtdK~   44 (80)
T d1pmra_          15 ADATVATWHKKPGD-AVVRDEVLVEIETDKV   44 (80)
T ss_dssp             SCEECCBCCCCTTC-CBSSSCCBCBCCSSSC
T ss_pred             cEEEEEEEEeCCCC-EEcCCCEEEEEEcCce
Confidence            57999999999999 8999999999987543

>d1brwa3 d.41.3.1 (A:331-433) Pyrimidine nucleoside phosphorylase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: alpha/beta-Hammerhead
superfamily: Pyrimidine nucleoside phosphorylase C-terminal domain
family: Pyrimidine nucleoside phosphorylase C-terminal domain
domain: Pyrimidine nucleoside phosphorylase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=85.22  E-value=0.52  Score=36.58  Aligned_cols=21  Identities=24%  Similarity=0.281  Sum_probs=18.5

Q ss_pred             eecCCCccccCCcEEEEEEcCC
Q psy16142        140 LVPAGSKDVPIGKLVCIIVENE  161 (426)
Q Consensus       140 ~v~~G~~~v~vG~~l~~i~~~~  161 (426)
                      +++.|+ .|..|++|++|....
T Consensus        51 ~~k~Gd-~V~~Gd~l~~i~~~~   71 (103)
T d1brwa3          51 HKKIGD-RVQKGEALATIHSNR   71 (103)
T ss_dssp             SCCTTC-EECTTCEEEEEEESS
T ss_pred             eccCCC-EEcCCCeEEEEEcCC
Confidence            889999 899999999998643

>d1uoua3 d.41.3.1 (A:374-480) Thymidine phosphorylase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: alpha/beta-Hammerhead
superfamily: Pyrimidine nucleoside phosphorylase C-terminal domain
family: Pyrimidine nucleoside phosphorylase C-terminal domain
domain: Thymidine phosphorylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.88  E-value=0.77  Score=35.76  Aligned_cols=22  Identities=18%  Similarity=0.235  Sum_probs=19.0

Q ss_pred             EeecCCCccccCCcEEEEEEcCC
Q psy16142        139 ILVPAGSKDVPIGKLVCIIVENE  161 (426)
Q Consensus       139 i~v~~G~~~v~vG~~l~~i~~~~  161 (426)
                      ++.+.|+ .|..|++|++|....
T Consensus        48 l~~k~Gd-~V~~G~~l~~ih~~~   69 (105)
T d1uoua3          48 LLVDVGQ-RLRRGTPWLRVHRDG   69 (105)
T ss_dssp             ECSCTTC-EECTTCEEEEEEESS
T ss_pred             EeecCCC-EEcCCCeEEEEECCC
Confidence            4889999 899999999997654