Psyllid ID: psy16159

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-----
Protein Sequence
QELEIKKAAKEGDKIAATILAKQLIQIRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAMKNTADTMKNMNSIMKPEQIAASAQEFQQGITRMNMTDEMIDEALDDMLEGSDDEQESNKIIDQVLGEIGIEISGKMANAPTVSGKVGEGSKSSSKTQVPSDAEIEAQLARLLGS
Secondary Structure (PSIPRED)
cHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHccccccccccccccccccccccccHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
QELEIKKAAKEGDKIAATILAKQLIQIRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAMKNTADTMKNMNSIMKPEQIAASAQEFQQGITRMNMTDEMIDEALDDmlegsddeqesNKIIDQVLGEIGIeisgkmanaptvsgkvgegsksssktqvpsDAEIEAQLARLLGS
Flexible Loop (DISEMBL)
QELEIKKaakegdkiaATILAKQLIQIRKQKTRTyaaqgkvhsigiqnktmgsnIKMAEAMKNTADTMKNMNSIMKPEQIAASAQEFQQGITRMNMTDEMIDEALDDMLEGSDDEQESNKIIDQVLGEIGIEISGKMANAPTVsgkvgegsksssktqvpsdaeIEAQLARLLGS
Low Complexity Region (SEG)
QELEIKKAAKEGDKIAATILAKQLIQIRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAMKNTADTMKNMNSIMKPEQIAASAQEFQQGITRMNMTDEMIDEALDDMLEGSDDEQESNKIIDQVLGEIGIEISGKMANAPTvsgkvgegskssskTQVPSDAEIEAQLARLLGS
Disordered region (IsUnstruct)
**************IAATILAKQLIQIRKQKTRTYAAQGKVHSIGI**************************************************************************IIDQVLGEIGIEI******************************************
Disordered Region (DISOPRED)
**LEIKK*A*EGDKIAATILAKQLIQIRKQKTRTYAAQGKVHSIGIQNKT***********KNTADTMKNMNSIMKPEQIAASAQ*FQ***********MI*EAL**********QESNKIIDQVLGEIGIEI***********************************LARL***
Disordered Region (DISEMBL)
QELEIKKAAKEGDKIAATILAKQLIQIR***********KVHSIGIQNKTMGSNIKMAEAMKNTADTMKNMNSIMKPEQIAASAQEFQQGITRMNMTDEMIDEALDDML********SNKIIDQVLGEIGIEISGKMANAPT********************AEIEAQLARLLGS
Disordered Region (DISPRO)
QELEIKKAAKEGDKIAATILAKQLIQIRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAMKNTADTMKNMNSIMKPEQIAASAQEFQQGITRMNMTDEMIDEALDDMLEGSDDEQESNKIIDQVLGEIGIEISGKMA*************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
QELEIKKAAKEGDKIAATILAKQLIQIRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAMKNTADTMKNMNSIMKPEQIAASAQEFQQGITRMNMTDEMIDEALDDMLEGSDDEQESNKIIDQVLGEIGIEISGKMANAPTVSGKVGEGSKSSSKTQVPSDAEIEAQLARLLGS
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	175	2.2.26 [Sep-21-2011]
Q6NVL7	214	Charged multivesicular bo	yes	N/A	0.965	0.789	0.538	4e-41
Q66IV6	214	Charged multivesicular bo	N/A	N/A	0.965	0.789	0.532	6e-41
Q5F3A2	214	Charged multivesicular bo	yes	N/A	0.965	0.789	0.538	1e-40
Q7SYR0	214	Charged multivesicular bo	N/A	N/A	0.965	0.789	0.532	2e-40
Q3SX42	213	Charged multivesicular bo	yes	N/A	0.96	0.788	0.532	3e-40
Q8BJF9	213	Charged multivesicular bo	yes	N/A	0.96	0.788	0.532	5e-40
Q5RAV2	213	Charged multivesicular bo	yes	N/A	0.96	0.788	0.532	5e-40
Q9UQN3	213	Charged multivesicular bo	yes	N/A	0.96	0.788	0.532	5e-40
Q6NXD2	214	Charged multivesicular bo	no	N/A	0.965	0.789	0.497	6e-38
Q54DB1	198	Charged multivesicular bo	yes	N/A	0.88	0.777	0.345	2e-19

>sp|Q6NVL7|CHM2B_XENTR Charged multivesicular body protein 2b OS=Xenopus tropicalis GN=chmp2b PE=2 SV=1

 Score =  167 bits (422), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 92/171 (53%), Positives = 118/171 (69%), Gaps = 2/171 (1%)

Query: 2   ELEIKKAAKEGDKIAATILAKQLIQIRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAM 61
           E+EIKK AK G+K A  +LAKQL+Q+RKQKTRTYA   KV S+  Q K M S +KMA AM
Sbjct: 43  EMEIKKMAKAGNKDACRVLAKQLVQLRKQKTRTYAVSSKVTSMSTQTKVMSSQMKMAGAM 102

Query: 62  KNTADTMKNMNSIMKPEQIAASAQEFQQGITRMNMTDEMIDEALDDMLEGSDDEQESNKI 121
             TA TM+ +N  M P++   + Q FQ+   +M MT+EMI++ LDD+ + SDDE+ES  I
Sbjct: 103 STTAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDASDDEEESQDI 162

Query: 122 IDQVLGEIGIEISGKMANAPTVSGKVGEGSKSSSKTQVPSDAEIEAQLARL 172
           ++QVL EIGIEISGKMA AP+ +   G  S S+SK+   SD EIE QL  L
Sbjct: 163 VNQVLDEIGIEISGKMAKAPSAAK--GLPSTSASKSSGISDEEIERQLKAL 211

Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids.
Xenopus tropicalis (taxid: 8364)

>sp|Q66IV6|CH2BB_XENLA Charged multivesicular body protein 2b-B OS=Xenopus laevis GN=chmp2b-b PE=2 SV=1

 Score =  166 bits (421), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 91/171 (53%), Positives = 119/171 (69%), Gaps = 2/171 (1%)

Query: 2   ELEIKKAAKEGDKIAATILAKQLIQIRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAM 61
           E+EIKK AK G+K A  +LAKQL+Q+RKQKTRTYA   KV S+  Q K M S +KMA AM
Sbjct: 43  EMEIKKMAKTGNKDACRVLAKQLVQLRKQKTRTYAVSSKVTSMSTQTKVMSSQMKMAGAM 102

Query: 62  KNTADTMKNMNSIMKPEQIAASAQEFQQGITRMNMTDEMIDEALDDMLEGSDDEQESNKI 121
             TA TM+ +N  M P++   + Q FQ+   +M MTDEMI++ LDD+ + S+DE+ES  I
Sbjct: 103 STTAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTDEMINDTLDDIFDASEDEEESQDI 162

Query: 122 IDQVLGEIGIEISGKMANAPTVSGKVGEGSKSSSKTQVPSDAEIEAQLARL 172
           ++QVL EIGIEISGKMA AP+ +   G  S S++K++  SD EIE QL  L
Sbjct: 163 VNQVLDEIGIEISGKMAKAPSAAK--GLPSTSAAKSKGISDEEIERQLKAL 211

Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids.

Xenopus laevis (taxid: 8355)

>sp|Q5F3A2|CHM2B_CHICK Charged multivesicular body protein 2b OS=Gallus gallus GN=CHMP2B PE=2 SV=1

 Score =  165 bits (417), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 92/171 (53%), Positives = 115/171 (67%), Gaps = 2/171 (1%)

Query: 2   ELEIKKAAKEGDKIAATILAKQLIQIRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAM 61
           ELEIKK AK G+K A  +LAKQL+Q+RKQK RTYA   KV S+  Q K M S +KMA AM
Sbjct: 43  ELEIKKMAKTGNKEACKVLAKQLVQLRKQKNRTYAVSSKVTSMSTQTKVMNSQMKMAGAM 102

Query: 62  KNTADTMKNMNSIMKPEQIAASAQEFQQGITRMNMTDEMIDEALDDMLEGSDDEQESNKI 121
             TA TM+ +N  M P++   + Q FQ+   +M MT+EMI++ LDD+ + SD+E+ES  I
Sbjct: 103 STTAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDASDEEEESQDI 162

Query: 122 IDQVLGEIGIEISGKMANAPTVSGKVGEGSKSSSKTQVPSDAEIEAQLARL 172
           ++QVL EIGIEISGKMA AP  S   G  S S+SK    SD EIE QL  L
Sbjct: 163 VNQVLDEIGIEISGKMAKAP--SAARGLPSASTSKASTISDEEIERQLKAL 211

Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids.

Gallus gallus (taxid: 9031)

>sp|Q7SYR0|CH2BA_XENLA Charged multivesicular body protein 2b-A OS=Xenopus laevis GN=chmp2b-a PE=2 SV=1

 Score =  164 bits (416), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 91/171 (53%), Positives = 118/171 (69%), Gaps = 2/171 (1%)

Query: 2   ELEIKKAAKEGDKIAATILAKQLIQIRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAM 61
           E+EIKK AK G+K A  +LAKQL+Q+RKQKTRTYA   KV S+  Q K M S +KMA AM
Sbjct: 43  EMEIKKMAKAGNKDACKVLAKQLVQLRKQKTRTYAVSSKVTSMSTQTKVMSSQMKMAGAM 102

Query: 62  KNTADTMKNMNSIMKPEQIAASAQEFQQGITRMNMTDEMIDEALDDMLEGSDDEQESNKI 121
             TA TM+ +N  M P++   + Q FQ+   +M MT+EMI++ LDD+ + S+DE+ES  I
Sbjct: 103 STTAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDASEDEEESQDI 162

Query: 122 IDQVLGEIGIEISGKMANAPTVSGKVGEGSKSSSKTQVPSDAEIEAQLARL 172
           ++QVL EIGIEISGKMA AP+ +   G  S S+SK+   SD EIE QL  L
Sbjct: 163 VNQVLDEIGIEISGKMAKAPSAAK--GLPSASASKSTGISDEEIERQLKAL 211

Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids.

Xenopus laevis (taxid: 8355)

>sp|Q3SX42|CHM2B_BOVIN Charged multivesicular body protein 2b OS=Bos taurus GN=CHMP2B PE=2 SV=1

 Score =  164 bits (415), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 91/171 (53%), Positives = 119/171 (69%), Gaps = 3/171 (1%)

Query: 2   ELEIKKAAKEGDKIAATILAKQLIQIRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAM 61
           ELEIKK AK G+K A  +LAKQL+ +RKQKTRT+A   KV S+  Q K M S +KMA AM
Sbjct: 43  ELEIKKMAKIGNKEACRVLAKQLVHLRKQKTRTFAVSSKVTSMSTQTKVMNSQMKMAGAM 102

Query: 62  KNTADTMKNMNSIMKPEQIAASAQEFQQGITRMNMTDEMIDEALDDMLEGSDDEQESNKI 121
             TA TM+ +N  M P++   + Q FQ+   +M MT+EMI++ LDD+ +GSDDE+ES  I
Sbjct: 103 STTAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDGSDDEEESQDI 162

Query: 122 IDQVLGEIGIEISGKMANAPTVSGKVGEGSKSSSKTQVPSDAEIEAQLARL 172
           ++QVL EIGIEISGKMA AP+ +  +   S S+SK+ + SD EIE QL  L
Sbjct: 163 VNQVLDEIGIEISGKMAKAPSAARSL--PSASTSKSTI-SDEEIERQLKAL 210

Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids. The MVB pathway appears to require the sequential function of ESCRT-O, -I,-II and -III complexes. ESCRT-III proteins mostly dissociate from the invaginating membrane before the ILV is released. The ESCRT machinery also functions in topologically equivalent membrane fission events, such as the terminal stages of cytokinesis and the budding of enveloped viruses (lentiviruses). ESCRT-III proteins are believed to mediate the necessary vesicle extrusion and/or membrane fission activities, possibly in conjunction with the AAA ATPase VPS4.

Bos taurus (taxid: 9913)

>sp|Q8BJF9|CHM2B_MOUSE Charged multivesicular body protein 2b OS=Mus musculus GN=Chmp2b PE=2 SV=1

 Score =  163 bits (413), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 91/171 (53%), Positives = 118/171 (69%), Gaps = 3/171 (1%)

Query: 2   ELEIKKAAKEGDKIAATILAKQLIQIRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAM 61
           ELEIKK AK G+K A  +LAKQL+ +RKQKTRT+A   KV S+  Q K M S +KMA AM
Sbjct: 43  ELEIKKMAKIGNKEACRVLAKQLVHLRKQKTRTFAVSSKVTSMSTQTKVMNSQMKMAGAM 102

Query: 62  KNTADTMKNMNSIMKPEQIAASAQEFQQGITRMNMTDEMIDEALDDMLEGSDDEQESNKI 121
             TA TM+ +N  M P++   + Q FQ+   +M MT+EMI++ LDD+ +GSDDE+ES  I
Sbjct: 103 STTAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDGSDDEEESQDI 162

Query: 122 IDQVLGEIGIEISGKMANAPTVSGKVGEGSKSSSKTQVPSDAEIEAQLARL 172
           ++QVL EIGIEISGKMA AP+ +  +   S S+SK  + SD EIE QL  L
Sbjct: 163 VNQVLDEIGIEISGKMAKAPSAARSL--PSASTSKATI-SDEEIERQLKAL 210

Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids. The MVB pathway appears to require the sequential function of ESCRT-O, -I,-II and -III complexes. ESCRT-III proteins mostly dissociate from the invaginating membrane before the ILV is released. The ESCRT machinery also functions in topologically equivalent membrane fission events, such as the terminal stages of cytokinesis. ESCRT-III proteins are believed to mediate the necessary vesicle extrusion and/or membrane fission activities, possibly in conjunction with the AAA ATPase VPS4.

Mus musculus (taxid: 10090)

>sp|Q5RAV2|CHM2B_PONAB Charged multivesicular body protein 2b OS=Pongo abelii GN=CHMP2B PE=2 SV=1

 Score =  163 bits (413), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 91/171 (53%), Positives = 118/171 (69%), Gaps = 3/171 (1%)

Query: 2   ELEIKKAAKEGDKIAATILAKQLIQIRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAM 61
           ELEIKK AK G+K A  +LAKQL+ +RKQKTRT+A   KV S+  Q K M S +KMA AM
Sbjct: 43  ELEIKKMAKIGNKEACKVLAKQLVHLRKQKTRTFAVSSKVTSMSTQTKVMNSQMKMAGAM 102

Query: 62  KNTADTMKNMNSIMKPEQIAASAQEFQQGITRMNMTDEMIDEALDDMLEGSDDEQESNKI 121
             TA TM+ +N  M P++   + Q FQ+   +M MT+EMI++ LDD+ +GSDDE+ES  I
Sbjct: 103 STTAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDGSDDEEESQDI 162

Query: 122 IDQVLGEIGIEISGKMANAPTVSGKVGEGSKSSSKTQVPSDAEIEAQLARL 172
           ++QVL EIGIEISGKMA AP+ +  +   S S+SK  + SD EIE QL  L
Sbjct: 163 VNQVLDEIGIEISGKMAKAPSAARSL--PSASTSKATI-SDEEIERQLKAL 210

Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids. The MVB pathway appears to require the sequential function of ESCRT-O, -I,-II and -III complexes. ESCRT-III proteins mostly dissociate from the invaginating membrane before the ILV is released. The ESCRT machinery also functions in topologically equivalent membrane fission events, such as the terminal stages of cytokinesis and the budding of enveloped viruses (lentiviruses). ESCRT-III proteins are believed to mediate the necessary vesicle extrusion and/or membrane fission activities, possibly in conjunction with the AAA ATPase VPS4.

Pongo abelii (taxid: 9601)

>sp|Q9UQN3|CHM2B_HUMAN Charged multivesicular body protein 2b OS=Homo sapiens GN=CHMP2B PE=1 SV=1

 Score =  163 bits (413), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 91/171 (53%), Positives = 118/171 (69%), Gaps = 3/171 (1%)

Query: 2   ELEIKKAAKEGDKIAATILAKQLIQIRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAM 61
           ELEIKK AK G+K A  +LAKQL+ +RKQKTRT+A   KV S+  Q K M S +KMA AM
Sbjct: 43  ELEIKKMAKIGNKEACKVLAKQLVHLRKQKTRTFAVSSKVTSMSTQTKVMNSQMKMAGAM 102

Query: 62  KNTADTMKNMNSIMKPEQIAASAQEFQQGITRMNMTDEMIDEALDDMLEGSDDEQESNKI 121
             TA TM+ +N  M P++   + Q FQ+   +M MT+EMI++ LDD+ +GSDDE+ES  I
Sbjct: 103 STTAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDGSDDEEESQDI 162

Query: 122 IDQVLGEIGIEISGKMANAPTVSGKVGEGSKSSSKTQVPSDAEIEAQLARL 172
           ++QVL EIGIEISGKMA AP+ +  +   S S+SK  + SD EIE QL  L
Sbjct: 163 VNQVLDEIGIEISGKMAKAPSAARSL--PSASTSKATI-SDEEIERQLKAL 210

Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids. The MVB pathway appears to require the sequential function of ESCRT-O, -I,-II and -III complexes. ESCRT-III proteins mostly dissociate from the invaginating membrane before the ILV is released. The ESCRT machinery also functions in topologically equivalent membrane fission events, such as the terminal stages of cytokinesis and the budding of enveloped viruses (HIV-1 and other lentiviruses). ESCRT-III proteins are believed to mediate the necessary vesicle extrusion and/or membrane fission activities, possibly in conjunction with the AAA ATPase VPS4.

Homo sapiens (taxid: 9606)

>sp|Q6NXD2|CHM2B_DANRE Charged multivesicular body protein 2b OS=Danio rerio GN=chmp2b PE=2 SV=1

 Score =  156 bits (395), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 85/171 (49%), Positives = 117/171 (68%), Gaps = 2/171 (1%)

Query: 2   ELEIKKAAKEGDKIAATILAKQLIQIRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAM 61
           E+EIKK AK G++ A  +LAKQL+Q+RKQKTRTYA   KV S+  Q K M S +KMA AM
Sbjct: 43  EMEIKKMAKTGNRDACKVLAKQLVQVRKQKTRTYAVSSKVTSMSTQTKLMNSQMKMAGAM 102

Query: 62  KNTADTMKNMNSIMKPEQIAASAQEFQQGITRMNMTDEMIDEALDDMLEGSDDEQESNKI 121
             T  TM+ +N  M P++   + Q FQ+   +M+MT+EM+++ LD++ E S DE+ES  I
Sbjct: 103 ATTTKTMQAVNKKMDPKKTMQTLQNFQKETAKMDMTEEMMNDTLDEIFEDSGDEEESQDI 162

Query: 122 IDQVLGEIGIEISGKMANAPTVSGKVGEGSKSSSKTQVPSDAEIEAQLARL 172
           ++QVL EIGIEISGKMA+AP+ + K    S +++K    SD +IE QL  L
Sbjct: 163 VNQVLDEIGIEISGKMAHAPSAARKT--PSAATAKADGISDEDIERQLKAL 211

Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids.

Danio rerio (taxid: 7955)

>sp|Q54DB1|CM2A2_DICDI Charged multivesicular body protein 2a homolog 2 OS=Dictyostelium discoideum GN=chmp2a2 PE=3 SV=1

 Score = 95.1 bits (235), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 55/159 (34%), Positives = 95/159 (59%), Gaps = 5/159 (3%)

Query: 3   LEIKKAAKEGDKIAATILAKQLIQIRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAMK 62
           L+IKK AK+G   +A I+AK L++ R    + Y  + ++ ++ ++ +T+ S   MAEAMK
Sbjct: 44  LDIKKMAKQGQMNSAKIMAKDLVRTRYHIQKFYEMKTQLQAVSLRIQTLQSTQAMAEAMK 103

Query: 63  NTADTMKNMNSIMKPEQIAASAQEFQQGITRMNMTDEMIDEALDDMLEGSDDEQESNKII 122
                M  MN  M   Q      EF+Q   +M+M +EM+++ +D ++E   +E++S +I+
Sbjct: 104 GVTKAMITMNRQMNLPQFTKIMMEFEQQSDKMDMKEEMMNDTMDQVMEQDGEEEQSQEIL 163

Query: 123 DQVLGEIGIEISGKMANAPTVSGKVGEGSKSSSKTQVPS 161
           +QVL EIGI+++ ++ +APT       G+  +SK QV S
Sbjct: 164 NQVLDEIGIDLASQLVDAPTTV-----GTSVASKHQVNS 197

Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and are delivered to lysosomes enabling degradation of membrane proteins.

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	175
241562041	212	vacuolar assembly/sorting protein DID4,	0.954	0.787	0.552	4e-45
242023384	212	Charged multivesicular body protein 2B,	0.942	0.778	0.529	1e-44
270011429	215	hypothetical protein TcasGA2_TC005451 [T	0.948	0.772	0.594	2e-44
189240453	653	PREDICTED: similar to CG4618 CG4618-PA [	0.925	0.248	0.590	6e-43
332372510	212	unknown [Dendroctonus ponderosae]	0.954	0.787	0.557	3e-42
389615141	209	charged multivesicular body protein 2b [	0.937	0.784	0.546	4e-42
195376305	212	GJ13157 [Drosophila virilis] gi|19415409	0.96	0.792	0.534	5e-42
195127367	212	GI13330 [Drosophila mojavensis] gi|19391	0.948	0.783	0.546	1e-41
195441685	213	GK20320 [Drosophila willistoni] gi|19416	0.965	0.793	0.522	2e-41
346469353	213	hypothetical protein [Amblyomma maculatu	0.96	0.788	0.523	2e-41

>gi|241562041|ref|XP_002401285.1| vacuolar assembly/sorting protein DID4, putative [Ixodes scapularis] gi|215499837|gb|EEC09331.1| vacuolar assembly/sorting protein DID4, putative [Ixodes scapularis] gi|442750247|gb|JAA67283.1| Putative assembly/vacuolar sorting protein [Ixodes ricinus]

 Score =  186 bits (471), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 95/172 (55%), Positives = 131/172 (76%), Gaps = 5/172 (2%)

Query: 2   ELEIKKAAKEGDKIAATILAKQLIQIRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAM 61
           ELEIKKAAKEG+K   T+LAKQL+Q+RKQK RTY A  KV ++G Q+KTM +N+K+A+AM
Sbjct: 43  ELEIKKAAKEGNKQVCTVLAKQLVQVRKQKARTYTASSKVQAVGAQSKTMHANVKLADAM 102

Query: 62  KNTADTMKNMNSIMKPEQIAASAQEFQQGITRMNMTDEMIDEALDDMLEGSDDEQESNKI 121
             TA TM  +N  +KP+ IA + QEF++  T+M MT+E++D+ L+ +L+ S DE+E + I
Sbjct: 103 ATTAKTMGEVNKSIKPQDIARTMQEFEKETTKMGMTEEIVDDTLNSILDESGDEEEQDAI 162

Query: 122 IDQVLGEIGIEISGKMANAPT-VSGKVGEGSKSSSKTQVPSDAEIEAQLARL 172
           ++QVL EIGIE+SGKMANAP+ +S  +G     SSK ++PSD EIE QLA+L
Sbjct: 163 VNQVLDEIGIEVSGKMANAPSAMSDPLGH----SSKAKLPSDDEIERQLAKL 210

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242023384|ref|XP_002432114.1| Charged multivesicular body protein 2B, putative [Pediculus humanus corporis] gi|212517488|gb|EEB19376.1| Charged multivesicular body protein 2B, putative [Pediculus humanus corporis]

 Score =  184 bits (466), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 91/172 (52%), Positives = 129/172 (75%), Gaps = 7/172 (4%)

Query: 2   ELEIKKAAKEGDKIAATILAKQLIQIRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAM 61
           E+EI+K AKEG+K    ILAKQL+Q+RKQK RT AA  K+H I  QNK MG+N+ + +AM
Sbjct: 43  EMEIRKMAKEGNKEGCAILAKQLVQLRKQKNRTIAATSKIHGIAAQNKMMGANVALTDAM 102

Query: 62  KNTADTMKNMNSIMKPEQIAASAQEFQQGITRMNMTDEMIDEALDDMLEGSDDEQESNKI 121
             T+ TM N+N +M+P+++A   + F +  T+M MT+E+I++ LDD+L+ SDDE+ES+K+
Sbjct: 103 ATTSKTMGNINKLMQPQRLANDMKAFHEAATKMGMTEEIINDTLDDILDASDDEEESDKV 162

Query: 122 IDQVLGEIGIEISGKMANAPT-VSGKVGEGSKSSSKTQVPSDAEIEAQLARL 172
           + QVL EIGIEISG+M+ AP  V G+VGE      K+++P+D EIEAQLA+L
Sbjct: 163 VTQVLDEIGIEISGEMSKAPNAVRGRVGE------KSRLPTDEEIEAQLAKL 208

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270011429|gb|EFA07877.1| hypothetical protein TcasGA2_TC005451 [Tribolium castaneum]

 Score =  183 bits (465), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 101/170 (59%), Positives = 123/170 (72%), Gaps = 4/170 (2%)

Query: 4   EIKKAAKEGDKIAATILAKQLIQIRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAMKN 63
           EIKK AKEG+     +LAKQL+Q+RKQK R+Y+A  KV  I  QNK MG+N+K+A AM  
Sbjct: 47  EIKKLAKEGNNEGCKLLAKQLVQLRKQKNRSYSATSKVRGISAQNKAMGANVKLANAMGV 106

Query: 64  TADTMKNMNSIMKPEQIAASAQEFQQGITRMNMTDEMIDEALDDMLEGSDDEQESNKIID 123
              TM +MN IMKPEQIAA+   F +  T+M MTDEMI+E+LDD+L  S DE+ES+ II 
Sbjct: 107 AGKTMSDMNRIMKPEQIAANVNAFTRESTKMEMTDEMINESLDDILAESGDEEESDNIIS 166

Query: 124 QVLGEIGIEISGKMANAPTV-SGKVGEGSKSSSKTQVPSDAEIEAQLARL 172
           QVL EIGIEISGKMA AP    GK+GE SK+SS     +D EIEAQLA+L
Sbjct: 167 QVLDEIGIEISGKMAGAPLPEKGKIGETSKASSGL---TDEEIEAQLAKL 213

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189240453|ref|XP_973478.2| PREDICTED: similar to CG4618 CG4618-PA [Tribolium castaneum]

 Score =  178 bits (452), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 98/166 (59%), Positives = 119/166 (71%), Gaps = 4/166 (2%)

Query: 4   EIKKAAKEGDKIAATILAKQLIQIRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAMKN 63
           EIKK AKEG+     +LAKQL+Q+RKQK R+Y+A  KV  I  QNK MG+N+K+A AM  
Sbjct: 47  EIKKLAKEGNNEGCKLLAKQLVQLRKQKNRSYSATSKVRGISAQNKAMGANVKLANAMGV 106

Query: 64  TADTMKNMNSIMKPEQIAASAQEFQQGITRMNMTDEMIDEALDDMLEGSDDEQESNKIID 123
              TM +MN IMKPEQIAA+   F +  T+M MTDEMI+E+LDD+L  S DE+ES+ II 
Sbjct: 107 AGKTMSDMNRIMKPEQIAANVNAFTRESTKMEMTDEMINESLDDILAESGDEEESDNIIS 166

Query: 124 QVLGEIGIEISGKMANAPTV-SGKVGEGSKSSSKTQVPSDAEIEAQ 168
           QVL EIGIEISGKMA AP    GK+GE SK+SS     +D EIEAQ
Sbjct: 167 QVLDEIGIEISGKMAGAPLPEKGKIGETSKASSGL---TDEEIEAQ 209

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332372510|gb|AEE61397.1| unknown [Dendroctonus ponderosae]

 Score =  176 bits (447), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 97/174 (55%), Positives = 124/174 (71%), Gaps = 7/174 (4%)

Query: 2   ELEIKKAAKEGDKIAATILAKQLIQIRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAM 61
           E EIKK AK GD+    ILAKQL+Q+RKQKTR+YAA  KV  +  QNK MG+N+K+AE+M
Sbjct: 45  EQEIKKLAKAGDQEGCRILAKQLVQMRKQKTRSYAASSKVTGVQFQNKAMGANMKLAESM 104

Query: 62  KNTADTMKNMNSIMKPEQIAASAQEFQQGITRMNMTDEMIDEALDDMLEGSDDEQESNKI 121
                TM +MNS+MKPEQ+AA+   F +   +M MTDEMI++ LDDML  S DE+ES+ I
Sbjct: 105 GVAGKTMADMNSLMKPEQLAATVNAFTKENMKMEMTDEMINDTLDDMLTESGDEEESDNI 164

Query: 122 IDQVLGEIGIEISGKMANAPTV-SGKVGEGSKSSSKTQVPSDAEIEAQLARLLG 174
           + QVL EIGIE+SGKM+ AP   +GK+G+ SK        SD +IEAQLA+L G
Sbjct: 165 VTQVLDEIGIEMSGKMSGAPLPETGKIGQKSKGL------SDEDIEAQLAKLKG 212

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|389615141|dbj|BAM20561.1| charged multivesicular body protein 2b [Papilio polytes]

 Score =  176 bits (445), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 94/172 (54%), Positives = 122/172 (70%), Gaps = 8/172 (4%)

Query: 2   ELEIKKAAKEGDKIAATILAKQLIQIRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAM 61
           E+EIKK AKEG+     ILAKQL+Q+RKQKTR YAA  K+ S+ I NK MG+NI +A AM
Sbjct: 43  EMEIKKMAKEGNNDGCKILAKQLVQLRKQKTRIYAANSKISSVQIHNKAMGANIAIAGAM 102

Query: 62  KNTADTMKNMNSIMKPEQIAASAQEFQQGITRMNMTDEMIDEALDDMLEGSDDEQESNKI 121
             TA TM N+N ++ P QIA   + F+Q   +M+MTDEMI E LDD+++ S DEQES  I
Sbjct: 103 GTTAKTMGNINKVLNPHQIARDMEAFKQANAKMDMTDEMISETLDDIMDESGDEQESEGI 162

Query: 122 IDQVLGEIGIEISGKMANAPTVS-GKVGEGSKSSSKTQVPSDAEIEAQLARL 172
           ++QVL EIGIEISGKMANAP+V+  K+G+ +         +D E+ AQLA+L
Sbjct: 163 VNQVLDEIGIEISGKMANAPSVARNKIGDSA-------TDADKELMAQLAKL 207

Source: Papilio polytes

Species: Papilio polytes

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195376305|ref|XP_002046937.1| GJ13157 [Drosophila virilis] gi|194154095|gb|EDW69279.1| GJ13157 [Drosophila virilis]

 Score =  175 bits (444), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 93/174 (53%), Positives = 119/174 (68%), Gaps = 6/174 (3%)

Query: 2   ELEIKKAAKEGDKIAATILAKQLIQIRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAM 61
           E EI++ A  G+  A  ILAKQLI+IRKQK+R+YAA GK+ SIG QNK MG+NI + EAM
Sbjct: 45  EAEIRRNAAAGNNDACKILAKQLIEIRKQKSRSYAAAGKIQSIGYQNKNMGANIALGEAM 104

Query: 62  KNTADTMKNMNSIMKPEQIAASAQEFQQGITRMNMTDEMIDEALDDMLEGSDDEQESNKI 121
             TA TM  MN +M+PE IA + ++FQQ   RM MTDEMI++ LDDML  S DE+ESN +
Sbjct: 105 GTTAKTMAGMNKVMRPEAIAGTVRDFQQANMRMEMTDEMINDTLDDMLTESGDEEESNDV 164

Query: 122 IDQVLGEIGIEISGKMANAPTVSGKVGEGSKSSSKTQVPSDAEIEAQLARLLGS 175
           +++VL EIGIEISGKMAN P        GS     +   ++ +I  QLA+L  S
Sbjct: 165 VNKVLDEIGIEISGKMANIPAT------GSSEFETSGKRTEKDIADQLAKLRSS 212

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195127367|ref|XP_002008140.1| GI13330 [Drosophila mojavensis] gi|193919749|gb|EDW18616.1| GI13330 [Drosophila mojavensis]

 Score =  174 bits (442), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 94/172 (54%), Positives = 119/172 (69%), Gaps = 6/172 (3%)

Query: 4   EIKKAAKEGDKIAATILAKQLIQIRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAMKN 63
           EIK+ A  G+  A  ILAKQLI+IRKQK+R+YAA GK+ SIG QNK MG+NI + EAM  
Sbjct: 47  EIKRNAAAGNNDACRILAKQLIEIRKQKSRSYAAAGKIQSIGYQNKNMGANIALGEAMGT 106

Query: 64  TADTMKNMNSIMKPEQIAASAQEFQQGITRMNMTDEMIDEALDDMLEGSDDEQESNKIID 123
           TA TM  MN +M+PE IA + ++FQQ   RM MTDEMI++ LDDML  S DE+ESN +++
Sbjct: 107 TAKTMATMNKVMRPEAIAGTVRDFQQANMRMEMTDEMINDTLDDMLNESGDEEESNDVVN 166

Query: 124 QVLGEIGIEISGKMANAPTVSGKVGEGSKSSSKTQVPSDAEIEAQLARLLGS 175
           +VL EIGIEISGKMA+ P      GE   S  +T+     +I  QLA+L  S
Sbjct: 167 KVLDEIGIEISGKMASIPAAGS--GEFETSGKRTE----KDIADQLAKLRSS 212

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195441685|ref|XP_002068633.1| GK20320 [Drosophila willistoni] gi|194164718|gb|EDW79619.1| GK20320 [Drosophila willistoni]

 Score =  173 bits (439), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 91/174 (52%), Positives = 122/174 (70%), Gaps = 5/174 (2%)

Query: 2   ELEIKKAAKEGDKIAATILAKQLIQIRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAM 61
           E EI++ A  G+  A  ILAKQL++IRKQK+R+YAA GK+ SIG QNK MG+NI + EAM
Sbjct: 45  EAEIRRNAAAGNNDACRILAKQLVEIRKQKSRSYAAAGKIQSIGYQNKNMGANIALGEAM 104

Query: 62  KNTADTMKNMNSIMKPEQIAASAQEFQQGITRMNMTDEMIDEALDDMLEGSDDEQESNKI 121
            +TA TM  MN +M+PEQIA + ++FQ    +M MTDEMI++ LDDML  S DE+ESN +
Sbjct: 105 GSTAKTMATMNKVMRPEQIAGTVRDFQAANMKMEMTDEMINDTLDDMLNESGDEEESNAV 164

Query: 122 IDQVLGEIGIEISGKMANAPTVSGKVGEGSKSSSKTQVPSDAEIEAQLARLLGS 175
           ++QVL EIGIEISGKM+N P  +G   +   +  +T+     +I  QLA+L  S
Sbjct: 165 VNQVLDEIGIEISGKMSNIP-ATGTSSDFETAGKRTE----KDIADQLAKLRSS 213

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|346469353|gb|AEO34521.1| hypothetical protein [Amblyomma maculatum]

 Score =  173 bits (439), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 90/172 (52%), Positives = 128/172 (74%), Gaps = 4/172 (2%)

Query: 2   ELEIKKAAKEGDKIAATILAKQLIQIRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAM 61
           ELEIKKAA +G+K   T+LAKQL+QIRKQK RTYAA  KV ++G Q+K M +N+K+A AM
Sbjct: 43  ELEIKKAANQGNKQVCTVLAKQLVQIRKQKARTYAATSKVQAVGSQSKLMNANVKLANAM 102

Query: 62  KNTADTMKNMNSIMKPEQIAASAQEFQQGITRMNMTDEMIDEALDDMLEGSDDEQESNKI 121
             TA  M  +N  +KP+ IA + Q+F++  T+M MT+E++D+ L+ +L+ S DE+E + I
Sbjct: 103 ATTAKAMGEVNKRIKPQDIAKTMQDFEKESTKMGMTEEIVDDTLNSILDESGDEEEQDAI 162

Query: 122 IDQVLGEIGIEISGKMANAPTV-SGKVGEGSKSSSKTQVPSDAEIEAQLARL 172
           +++VL EIGIE+SGK+A AP+  S  +GEG   SSK ++P+D EIE QLA+L
Sbjct: 163 VNKVLDEIGIEMSGKLAAAPSARSDPLGEG---SSKARLPTDEEIERQLAKL 211

Source: Amblyomma maculatum

Species: Amblyomma maculatum

Genus: Amblyomma

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	175
FB|FBgn0035589	212	CHMP2B "Charged multivesicular	0.8	0.660	0.578	1.3e-38
UNIPROTKB|F1NR65	214	CHMP2B "Charged multivesicular	0.965	0.789	0.508	1.9e-37
UNIPROTKB|Q5F3A2	214	CHMP2B "Charged multivesicular	0.965	0.789	0.508	1.9e-37
UNIPROTKB|Q3SX42	213	CHMP2B "Charged multivesicular	0.96	0.788	0.508	1.9e-37
UNIPROTKB|E2R417	213	CHMP2B "Uncharacterized protei	0.96	0.788	0.508	1.9e-37
UNIPROTKB|Q9UQN3	213	CHMP2B "Charged multivesicular	0.96	0.788	0.508	1.9e-37
UNIPROTKB|F2Z5Q1	213	CHMP2B "Uncharacterized protei	0.96	0.788	0.508	1.9e-37
MGI|MGI:1916192	213	Chmp2b "charged multivesicular	0.96	0.788	0.508	1.9e-37
ZFIN|ZDB-GENE-070628-3	216	chmp2ba "chromatin modifying p	0.977	0.791	0.479	1.2e-35
ZFIN|ZDB-GENE-040426-2539	263	chmp2bb "chromatin modifying p	0.965	0.642	0.479	1.9e-35

FB|FBgn0035589 CHMP2B "Charged multivesicular body protein 2b" [Drosophila melanogaster (taxid:7227)]

 Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
 Identities = 81/140 (57%), Positives = 106/140 (75%)

Query:     2 ELEIKKAAKEGDKIAATILAKQLIQIRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAM 61
             ELEI++ A  G+  A  ILAKQL++IRKQK+RTYAA GK+ SIG QNK MG+NI ++EAM
Sbjct:    45 ELEIRRNAAAGNNDACRILAKQLVEIRKQKSRTYAAAGKIQSIGYQNKNMGANIALSEAM 104

Query:    62 KNTADTMKNMNSIMKPEQIAASAQEFQQGITRMNMTDEMIDEALDDMLEGSDDEQESNKI 121
               TA TM  MN +M+PE I  + ++FQ    +M MTDEMI++ LDDML  S DE+ESN +
Sbjct:   105 GTTAKTMGEMNKVMRPEAIGETVRQFQAANMKMEMTDEMINDTLDDMLNESGDEEESNAV 164

Query:   122 IDQVLGEIGIEISGKMANAP 141
             +++VL EIGIEISGKM++ P
Sbjct:   165 VNKVLDEIGIEISGKMSSIP 184

GO:0015031 "protein transport" evidence=IEA

UNIPROTKB|F1NR65 CHMP2B "Charged multivesicular body protein 2b" [Gallus gallus (taxid:9031)]

 Score = 402 (146.6 bits), Expect = 1.9e-37, P = 1.9e-37
 Identities = 87/171 (50%), Positives = 110/171 (64%)

Query:     2 ELEIKKAAKEGDKIAATILAKQLIQIRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAM 61
             ELEIKK AK G+K A  +LAKQL+Q+RKQK RTYA   KV S+  Q K M S +KMA AM
Sbjct:    43 ELEIKKMAKTGNKEACKVLAKQLVQLRKQKNRTYAVSSKVTSMSTQTKVMNSQMKMAGAM 102

Query:    62 KNTADTMKNMNSIMKPEQIAASAQEFQQGITRMNMTDEMIDEALDDMLEGSDDEQESNKI 121
               TA TM+ +N  M P++   + Q FQ+   +M MT+EMI++ LDD+ + SD+E+ES  I
Sbjct:   103 STTAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDASDEEEESQDI 162

Query:   122 IDQVLGEIGIEISGKMANAPTXXXXXXXXXXXXXXTQVPSDAEIEAQLARL 172
             ++QVL EIGIEISGKMA AP+              T   SD EIE QL  L
Sbjct:   163 VNQVLDEIGIEISGKMAKAPSAARGLPSASTSKASTI--SDEEIERQLKAL 211

GO:0015031 "protein transport" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IEA

UNIPROTKB|Q5F3A2 CHMP2B "Charged multivesicular body protein 2b" [Gallus gallus (taxid:9031)]

 Score = 402 (146.6 bits), Expect = 1.9e-37, P = 1.9e-37
 Identities = 87/171 (50%), Positives = 110/171 (64%)

Query:     2 ELEIKKAAKEGDKIAATILAKQLIQIRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAM 61
             ELEIKK AK G+K A  +LAKQL+Q+RKQK RTYA   KV S+  Q K M S +KMA AM
Sbjct:    43 ELEIKKMAKTGNKEACKVLAKQLVQLRKQKNRTYAVSSKVTSMSTQTKVMNSQMKMAGAM 102

Query:    62 KNTADTMKNMNSIMKPEQIAASAQEFQQGITRMNMTDEMIDEALDDMLEGSDDEQESNKI 121
               TA TM+ +N  M P++   + Q FQ+   +M MT+EMI++ LDD+ + SD+E+ES  I
Sbjct:   103 STTAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDASDEEEESQDI 162

Query:   122 IDQVLGEIGIEISGKMANAPTXXXXXXXXXXXXXXTQVPSDAEIEAQLARL 172
             ++QVL EIGIEISGKMA AP+              T   SD EIE QL  L
Sbjct:   163 VNQVLDEIGIEISGKMAKAPSAARGLPSASTSKASTI--SDEEIERQLKAL 211

GO:0015031 "protein transport" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0031902 "late endosome membrane" evidence=IEA

UNIPROTKB|Q3SX42 CHMP2B "Charged multivesicular body protein 2b" [Bos taurus (taxid:9913)]

 Score = 402 (146.6 bits), Expect = 1.9e-37, P = 1.9e-37
 Identities = 87/171 (50%), Positives = 110/171 (64%)

Query:     2 ELEIKKAAKEGDKIAATILAKQLIQIRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAM 61
             ELEIKK AK G+K A  +LAKQL+ +RKQKTRT+A   KV S+  Q K M S +KMA AM
Sbjct:    43 ELEIKKMAKIGNKEACRVLAKQLVHLRKQKTRTFAVSSKVTSMSTQTKVMNSQMKMAGAM 102

Query:    62 KNTADTMKNMNSIMKPEQIAASAQEFQQGITRMNMTDEMIDEALDDMLEGSDDEQESNKI 121
               TA TM+ +N  M P++   + Q FQ+   +M MT+EMI++ LDD+ +GSDDE+ES  I
Sbjct:   103 STTAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDGSDDEEESQDI 162

Query:   122 IDQVLGEIGIEISGKMANAPTXXXXXXXXXXXXXXTQVPSDAEIEAQLARL 172
             ++QVL EIGIEISGKMA AP+                  SD EIE QL  L
Sbjct:   163 VNQVLDEIGIEISGKMAKAPSAARSLPSASTSKSTI---SDEEIERQLKAL 210

GO:0031902 "late endosome membrane" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

UNIPROTKB|E2R417 CHMP2B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 402 (146.6 bits), Expect = 1.9e-37, P = 1.9e-37
 Identities = 87/171 (50%), Positives = 110/171 (64%)

Query:     2 ELEIKKAAKEGDKIAATILAKQLIQIRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAM 61
             ELEIKK AK G+K A  +LAKQL+ +RKQKTRT+A   KV S+  Q K M S +KMA AM
Sbjct:    43 ELEIKKMAKIGNKEACRVLAKQLVHLRKQKTRTFAVSSKVTSMSTQTKVMNSQMKMAGAM 102

Query:    62 KNTADTMKNMNSIMKPEQIAASAQEFQQGITRMNMTDEMIDEALDDMLEGSDDEQESNKI 121
               TA TM+ +N  M P++   + Q FQ+   +M MT+EMI++ LDD+ +GSDDE+ES  I
Sbjct:   103 STTAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDGSDDEEESQDI 162

Query:   122 IDQVLGEIGIEISGKMANAPTXXXXXXXXXXXXXXTQVPSDAEIEAQLARL 172
             ++QVL EIGIEISGKMA AP+                  SD EIE QL  L
Sbjct:   163 VNQVLDEIGIEISGKMAKAPSAARSLPSASTSKATI---SDEEIERQLKAL 210

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

UNIPROTKB|Q9UQN3 CHMP2B "Charged multivesicular body protein 2b" [Homo sapiens (taxid:9606)]

 Score = 402 (146.6 bits), Expect = 1.9e-37, P = 1.9e-37
 Identities = 87/171 (50%), Positives = 110/171 (64%)

Query:     2 ELEIKKAAKEGDKIAATILAKQLIQIRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAM 61
             ELEIKK AK G+K A  +LAKQL+ +RKQKTRT+A   KV S+  Q K M S +KMA AM
Sbjct:    43 ELEIKKMAKIGNKEACKVLAKQLVHLRKQKTRTFAVSSKVTSMSTQTKVMNSQMKMAGAM 102

Query:    62 KNTADTMKNMNSIMKPEQIAASAQEFQQGITRMNMTDEMIDEALDDMLEGSDDEQESNKI 121
               TA TM+ +N  M P++   + Q FQ+   +M MT+EMI++ LDD+ +GSDDE+ES  I
Sbjct:   103 STTAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDGSDDEEESQDI 162

Query:   122 IDQVLGEIGIEISGKMANAPTXXXXXXXXXXXXXXTQVPSDAEIEAQLARL 172
             ++QVL EIGIEISGKMA AP+                  SD EIE QL  L
Sbjct:   163 VNQVLDEIGIEISGKMAKAPSAARSLPSASTSKATI---SDEEIERQLKAL 210

GO:0008219 "cell death" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0031902 "late endosome membrane" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IPI

GO:0005829 "cytosol" evidence=TAS

GO:0016044 "cellular membrane organization" evidence=TAS

GO:0016197 "endosomal transport" evidence=TAS

GO:0005622 "intracellular" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

UNIPROTKB|F2Z5Q1 CHMP2B "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 402 (146.6 bits), Expect = 1.9e-37, P = 1.9e-37
 Identities = 87/171 (50%), Positives = 110/171 (64%)

Query:     2 ELEIKKAAKEGDKIAATILAKQLIQIRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAM 61
             ELEIKK AK G+K A  +LAKQL+ +RKQKTRT+A   KV S+  Q K M S +KMA AM
Sbjct:    43 ELEIKKMAKIGNKEACRVLAKQLVHLRKQKTRTFAVSSKVTSMSTQTKVMNSQMKMAGAM 102

Query:    62 KNTADTMKNMNSIMKPEQIAASAQEFQQGITRMNMTDEMIDEALDDMLEGSDDEQESNKI 121
               TA TM+ +N  M P++   + Q FQ+   +M MT+EMI++ LDD+ +GSDDE+ES  I
Sbjct:   103 STTAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDGSDDEEESQDI 162

Query:   122 IDQVLGEIGIEISGKMANAPTXXXXXXXXXXXXXXTQVPSDAEIEAQLARL 172
             ++QVL EIGIEISGKMA AP+                  SD EIE QL  L
Sbjct:   163 VNQVLDEIGIEISGKMAKAPSAARSLPSASTSKATI---SDEEIERQLKAL 210

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

MGI|MGI:1916192 Chmp2b "charged multivesicular body protein 2B" [Mus musculus (taxid:10090)]

 Score = 402 (146.6 bits), Expect = 1.9e-37, P = 1.9e-37
 Identities = 87/171 (50%), Positives = 110/171 (64%)

Query:     2 ELEIKKAAKEGDKIAATILAKQLIQIRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAM 61
             ELEIKK AK G+K A  +LAKQL+ +RKQKTRT+A   KV S+  Q K M S +KMA AM
Sbjct:    43 ELEIKKMAKIGNKEACRVLAKQLVHLRKQKTRTFAVSSKVTSMSTQTKVMNSQMKMAGAM 102

Query:    62 KNTADTMKNMNSIMKPEQIAASAQEFQQGITRMNMTDEMIDEALDDMLEGSDDEQESNKI 121
               TA TM+ +N  M P++   + Q FQ+   +M MT+EMI++ LDD+ +GSDDE+ES  I
Sbjct:   103 STTAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDGSDDEEESQDI 162

Query:   122 IDQVLGEIGIEISGKMANAPTXXXXXXXXXXXXXXTQVPSDAEIEAQLARL 172
             ++QVL EIGIEISGKMA AP+                  SD EIE QL  L
Sbjct:   163 VNQVLDEIGIEISGKMAKAPSAARSLPSASTSKATI---SDEEIERQLKAL 210

GO:0005737 "cytoplasm" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=ISO

ZFIN|ZDB-GENE-070628-3 chmp2ba "chromatin modifying protein 2Ba" [Danio rerio (taxid:7955)]

 Score = 385 (140.6 bits), Expect = 1.2e-35, P = 1.2e-35
 Identities = 82/171 (47%), Positives = 108/171 (63%)

Query:     2 ELEIKKAAKEGDKIAATILAKQLIQIRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAM 61
             E+EIKK AK G++ A  ILAKQL+Q+RKQK RTYA   KV S+  Q K M S +KMA AM
Sbjct:    43 EMEIKKMAKTGNREACKILAKQLVQLRKQKNRTYAVSSKVTSMSTQTKVMNSQMKMAGAM 102

Query:    62 KNTADTMKNMNSIMKPEQIAASAQEFQQGITRMNMTDEMIDEALDDMLEGSDDEQESNKI 121
               TA TM+ +N  M P++   + Q+FQ+   +M MT++M++  LD++ + S DE+E   I
Sbjct:   103 STTAKTMQTVNKRMDPKKTLQTMQDFQKENMKMGMTEDMLNSTLDEIFDESADEEECQDI 162

Query:   122 IDQVLGEIGIEISGKMANAPTXXXXXXXXXXXXXXTQVPSDAEIEAQLARL 172
             ++QVL EIGIEISGKM  AP+              T   SDAEIE QL  L
Sbjct:   163 VNQVLDEIGIEISGKMVRAPSTGKILPGASPAKSKTATISDAEIERQLKAL 213

GO:0015031 "protein transport" evidence=IEA

ZFIN|ZDB-GENE-040426-2539 chmp2bb "chromatin modifying protein 2Bb" [Danio rerio (taxid:7955)]

 Score = 383 (139.9 bits), Expect = 1.9e-35, P = 1.9e-35
 Identities = 82/171 (47%), Positives = 110/171 (64%)

Query:     2 ELEIKKAAKEGDKIAATILAKQLIQIRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAM 61
             E+EIKK AK G++ A  +LAKQL+Q+RKQKTRTYA   KV S+  Q K M S +KMA AM
Sbjct:    92 EMEIKKMAKTGNRDACKVLAKQLVQVRKQKTRTYAVSSKVTSMSTQTKLMNSQMKMAGAM 151

Query:    62 KNTADTMKNMNSIMKPEQIAASAQEFQQGITRMNMTDEMIDEALDDMLEGSDDEQESNKI 121
               T  TM+ +N  M P++   + Q FQ+   +M+MT+EM+++ LD++ E S DE+ES  I
Sbjct:   152 ATTTKTMQAVNKKMDPKKTMQTLQNFQKETAKMDMTEEMMNDTLDEIFEDSGDEEESQDI 211

Query:   122 IDQVLGEIGIEISGKMANAPTXXXXXXXXXXXXXXTQVPSDAEIEAQLARL 172
             ++QVL EIGIEISGKMA+AP+                  SD +IE QL  L
Sbjct:   212 VNQVLDEIGIEISGKMAHAPSAARKTPSAATAKADGI--SDEDIERQLKAL 260

GO:0015031 "protein transport" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0031902 "late endosome membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q54DB1	CM2A2_DICDI	No assigned EC number	0.3459	0.88	0.7777	yes	N/A
Q941D5	VPS2C_ARATH	No assigned EC number	0.3493	0.8228	0.6857	yes	N/A
Q5RAV2	CHM2B_PONAB	No assigned EC number	0.5321	0.96	0.7887	yes	N/A
Q6NVL7	CHM2B_XENTR	No assigned EC number	0.5380	0.9657	0.7897	yes	N/A
Q9UQN3	CHM2B_HUMAN	No assigned EC number	0.5321	0.96	0.7887	yes	N/A
Q5F3A2	CHM2B_CHICK	No assigned EC number	0.5380	0.9657	0.7897	yes	N/A
Q3SX42	CHM2B_BOVIN	No assigned EC number	0.5321	0.96	0.7887	yes	N/A
Q8BJF9	CHM2B_MOUSE	No assigned EC number	0.5321	0.96	0.7887	yes	N/A
O14177	DID4_SCHPO	No assigned EC number	0.3219	0.8285	0.6904	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	175
pfam03357	169	pfam03357, Snf7, Snf7	3e-26

>gnl|CDD|146145 pfam03357, Snf7, Snf7

 Score = 97.7 bits (244), Expect = 3e-26
 Identities = 45/144 (31%), Positives = 74/144 (51%), Gaps = 2/144 (1%)

Query: 2   ELEIKKAAKEGDKIAATILAKQLIQIRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAM 61
           E EIKK AK+G+K AA IL KQ  +  KQ  +       +  + +  +   +N ++  AM
Sbjct: 28  EAEIKKLAKKGNKDAALILLKQKKRYEKQLDQLDGQLANLEQVRMAIENAKTNQEVLNAM 87

Query: 62  KNTADTMKNMNSIMKPEQIAASAQEFQQGITRMNMTDEMIDEALDDMLEGSDDEQESNKI 121
           K  A  MK MN  M  ++I     E +  + + +   EM+ + LDD     +DE+E +  
Sbjct: 88  KGGAKAMKAMNKNMDIDKIDDLMDEIEDQMEKADEISEMLSDTLDDA--DEEDEEELDAE 145

Query: 122 IDQVLGEIGIEISGKMANAPTVSG 145
           +D +L EIG E   ++ +AP+ + 
Sbjct: 146 LDALLDEIGDEELVELPSAPSGAL 169

This family of proteins are involved in protein sorting and transport from the endosome to the vacuole/lysosome in eukaryotic cells. Vacuoles/lysosomes play an important role in the degradation of both lipids and cellular proteins. In order to perform this degradative function, vacuoles/lysosomes contain numerous hydrolases which have been transported in the form of inactive precursors via the biosynthetic pathway and are proteolytically activated upon delivery to the vacuole/lysosome. The delivery of transmembrane proteins, such as activated cell surface receptors to the lumen of the vacuole/lysosome, either for degradation/downregulation, or in the case of hydrolases, for proper localisation, requires the formation of multivesicular bodies (MVBs). These late endosomal structures are formed by invaginating and budding of the limiting membrane into the lumen of the compartment. During this process, a subset of the endosomal membrane proteins is sorted into the forming vesicles. Mature MVBs fuse with the vacuole/lysosome, thereby releasing cargo containing vesicles into its hydrolytic lumen for degradation. Endosomal proteins that are not sorted into the intralumenal MVB vesicles are either recycled back to the plasma membrane or Golgi complex, or remain in the limiting membrane of the MVB and are thereby transported to the limiting membrane of the vacuole/lysosome as a consequence of fusion. Therefore, the MVB sorting pathway plays a critical role in the decision between recycling and degradation of membrane proteins. A few archaeal sequences are also present within this family. Length = 169

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	175
KOG3230|consensus	224		100.0
KOG3231|consensus	208		100.0
KOG3229|consensus	227		100.0
KOG3232|consensus	203		100.0
PF03357	171	Snf7: Snf7; InterPro: IPR005024 This is a family o	99.85
COG5491	204	VPS24 Conserved protein implicated in secretion [C	99.58
PTZ00464	211	SNF-7-like protein; Provisional	99.18
KOG1656|consensus	221		99.18
PTZ00446	191	vacuolar sorting protein SNF7-like; Provisional	98.83
COG5491	204	VPS24 Conserved protein implicated in secretion [C	98.25
KOG2910|consensus	209		98.22
KOG2911|consensus	439		97.6
KOG1655|consensus	218		96.98
PTZ00464	211	SNF-7-like protein; Provisional	94.2
PTZ00446	191	vacuolar sorting protein SNF7-like; Provisional	93.64
PRK10698	222	phage shock protein PspA; Provisional	93.5
PF03357	171	Snf7: Snf7; InterPro: IPR005024 This is a family o	92.98
KOG3231|consensus	208		92.29
KOG3230|consensus	224		89.71
PF03398	165	Ist1: Regulator of Vps4 activity in the MVB pathwa	88.49
TIGR02977	219	phageshock_pspA phage shock protein A. Members of	84.26
KOG2910|consensus	209		82.04
PF04012	221	PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T	81.09

>KOG3230|consensus

Probab=100.00  E-value=3.7e-49  Score=311.09  Aligned_cols=174  Identities=30%  Similarity=0.497  Sum_probs=156.8

Q ss_pred             CHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Q psy16159          1 QELEIKKAAKEGDKIAATILAKQLIQIRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAMKNTADTMKNMNSIMKPEQI   80 (175)
Q Consensus         1 l~~~IKkaakkg~~~~arilAk~lvr~Rk~~~~l~~~ka~l~sv~~~l~~~~s~~~~~~~m~~~~~~M~~~n~~m~~~~l   80 (175)
                      |+.+||+.||.|+++++||+||+|||+|+++.+|+.+|++|++|++++|+.+++..|+.+|+++|++|..||+.||+|++
T Consensus        42 lvaeIKk~AK~gq~~A~KimAkdLvRtR~~i~kf~~~kaqiqaVSl~iQtlkss~sma~aMkGaTkam~~MNrqmnlpq~  121 (224)
T KOG3230|consen   42 LVAEIKKTAKQGQMDAVKIMAKDLVRTRRYIKKFQNMKAQIQAVSLRIQTLKSSTSMAQAMKGATKAMAGMNRQMNLPQI  121 (224)
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhccChHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHHhchhhhhhccCCCCCC-CCCCCC---CCCCC-
Q psy16159         81 AASAQEFQQGITRMNMTDEMIDEALDDMLEGSDDEQESNKIIDQVLGEIGIEISGKMANAPTVS-GKVGEG---SKSSS-  155 (175)
Q Consensus        81 ~~~M~ef~ke~~~~~i~~emm~d~~d~~~~~~~~eee~d~~v~qVl~E~gl~~~~~l~~~p~~~-~~~~~~---~~~~~-  155 (175)
                      +++|++|+||++.||+.+|||+|++|++++++++|||+|++|+|||||||++++.+|.++|+.+ +.|...   ..... 
T Consensus       122 qkIm~eFekQse~Mdm~~Emm~daIDdal~~~edEEEtd~lvnqVLDEiGvdl~~qL~~~P~~~~~~~~a~~ig~~~a~~  201 (224)
T KOG3230|consen  122 QKIMQEFEKQSEIMDMKEEMMDDAIDDALGDDEDEEETDDLVNQVLDEIGVDLASQLSSLPSAAGSLPIAKTIGGKKAEA  201 (224)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHcccHHHHhccCcccccccchhhccCCccccc
Confidence            9999999999999999999999999999999999999999999999999999999999999822 222211   11010 


Q ss_pred             ---CCCCCCHHHHHHHHHHhhC
Q psy16159        156 ---KTQVPSDAEIEAQLARLLG  174 (175)
Q Consensus       156 ---~~~~~~~ddL~~RL~~Lr~  174 (175)
                         ......+|||++||++||+
T Consensus       202 ~gs~~~~~~dddLqaRL~~Lrk  223 (224)
T KOG3230|consen  202 AGSEFHSDADDDLQARLDNLRK  223 (224)
T ss_pred             cccccCCCchhHHHHHHHHHhc
Confidence               1123469999999999996

>KOG3231|consensus

Probab=100.00  E-value=7e-41  Score=258.69  Aligned_cols=168  Identities=50%  Similarity=0.700  Sum_probs=157.0

Q ss_pred             CHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Q psy16159          1 QELEIKKAAKEGDKIAATILAKQLIQIRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAMKNTADTMKNMNSIMKPEQI   80 (175)
Q Consensus         1 l~~~IKkaakkg~~~~arilAk~lvr~Rk~~~~l~~~ka~l~sv~~~l~~~~s~~~~~~~m~~~~~~M~~~n~~m~~~~l   80 (175)
                      |+.+||+.|+.|+.++||+|||+||.+|+|++|-|.+.+++.+++.|-..+.++.+|+++|+.++++|+.||+.|+++++
T Consensus        41 LElEIkk~Aa~GnndAcr~LAKQLV~lRkQKtrt~a~s~ki~s~~~QnK~M~s~~km~~AMgTTaKTM~amNk~M~pek~  120 (208)
T KOG3231|consen   41 LELEIKKMAAIGNNDACRVLAKQLVHLRKQKTRTFAVSSKITSMSTQNKVMNSQMKMAGAMGTTAKTMQAMNKKMDPEKT  120 (208)
T ss_pred             HHHHHHHHHHccCcHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHhchHHHHHHHHHccCCHHHH
Confidence            68899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHHhchhhhhhccCCCCCCCCCCCCCCCCCCCCCC
Q psy16159         81 AASAQEFQQGITRMNMTDEMIDEALDDMLEGSDDEQESNKIIDQVLGEIGIEISGKMANAPTVSGKVGEGSKSSSKTQVP  160 (175)
Q Consensus        81 ~~~M~ef~ke~~~~~i~~emm~d~~d~~~~~~~~eee~d~~v~qVl~E~gl~~~~~l~~~p~~~~~~~~~~~~~~~~~~~  160 (175)
                      ..+|++|++..++|++.+|||+|++|+.+++++++||.+.+|+||||||||++++++.++|+...++..++.      ..
T Consensus       121 ~~tmr~FQ~anmKMemTeEMiNDTLDdild~sgDeeEs~aiVNqVLDEIGIEisgKma~~P~a~s~~~~st~------ka  194 (208)
T KOG3231|consen  121 LQTMRNFQKANMKMEMTEEMINDTLDDILDGSGDEEESQAIVNQVLDEIGIEISGKMAKAPSARSLPSASTS------KA  194 (208)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHhhHHHHhcCCCcHHHHHHHHHHHHHHhhhhhcchhccCCccCCCCccccC------CC
Confidence            999999999999999999999999999999999999999999999999999999999999973333333322      24


Q ss_pred             CHHHHHHHHHHhhC
Q psy16159        161 SDAEIEAQLARLLG  174 (175)
Q Consensus       161 ~~ddL~~RL~~Lr~  174 (175)
                      ..+|+++.|++||+
T Consensus       195 t~~Die~QLa~Lrs  208 (208)
T KOG3231|consen  195 TISDIERQLAALRS  208 (208)
T ss_pred             cHHHHHHHHHHhcC
Confidence            78899999999985

>KOG3229|consensus

Probab=100.00  E-value=6.3e-40  Score=260.58  Aligned_cols=138  Identities=30%  Similarity=0.523  Sum_probs=131.2

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Q psy16159          2 ELEIKKAAKEGDKIAATILAKQLIQIRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAMKNTADTMKNMNSIMKPEQIA   81 (175)
Q Consensus         2 ~~~IKkaakkg~~~~arilAk~lvr~Rk~~~~l~~~ka~l~sv~~~l~~~~s~~~~~~~m~~~~~~M~~~n~~m~~~~l~   81 (175)
                      +..||++||+||+++||||||++|+.|+++.|+|..||||+||+|+|..+.++..++++|.++|++|+.||+++++|+|.
T Consensus        45 ~~~iK~aAKknD~~t~~iLAKEiv~srk~v~Rly~sKAqlnSv~M~l~eqla~~r~~G~lqkStevMk~v~sLvk~Pel~  124 (227)
T KOG3229|consen   45 QKSIKQAAKKNDKDTCRILAKEIVQSRKAVKRLYESKAQLNSVSMQLKEQLATLRVAGSLQKSTEVMKAVNSLVKLPELA  124 (227)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHhhHHHH
Confidence            46799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHHhchhhhhhccCCCC
Q psy16159         82 ASAQEFQQGITRMNMTDEMIDEALDDMLEGSDDEQESNKIIDQVLGEIGIEISGKMANAPT  142 (175)
Q Consensus        82 ~~M~ef~ke~~~~~i~~emm~d~~d~~~~~~~~eee~d~~v~qVl~E~gl~~~~~l~~~p~  142 (175)
                      .||.+|++||+|+||++||++|+|+++.|.++.++++|++|++||.+|.   ++.++++|.
T Consensus       125 ~TMrelSkEmmKaGIIEEmvdet~esv~d~eemeEe~deEVdkIL~~it---~~~~~~~p~  182 (227)
T KOG3229|consen  125 ATMRELSKEMMKAGIIEEMVDETMESVEDSEEMEEEADEEVDKILTEIT---GEKAGEAPL  182 (227)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHh---ccccccCCc
Confidence            9999999999999999999999999999888899999999999999996   555555554

>KOG3232|consensus

Probab=100.00  E-value=1.1e-37  Score=242.03  Aligned_cols=166  Identities=18%  Similarity=0.300  Sum_probs=151.9

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Q psy16159          3 LEIKKAAKEGDKIAATILAKQLIQIRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAMKNTADTMKNMNSIMKPEQIAA   82 (175)
Q Consensus         3 ~~IKkaakkg~~~~arilAk~lvr~Rk~~~~l~~~ka~l~sv~~~l~~~~s~~~~~~~m~~~~~~M~~~n~~m~~~~l~~   82 (175)
                      .++|+|+++||++.|||||.+.||.|++..+|+++.+++++|..|+||+.++.+++++|.++++.|....+.||+++|+.
T Consensus        37 ~K~kkAi~kgN~dvArIyAeNAIRkkne~~n~LrlssRvDAVaaRvqTavtmr~Vt~sM~gVvK~md~alktmNLekis~  116 (203)
T KOG3232|consen   37 AKLKKAIQKGNMDVARIYAENAIRKKNEAVNYLRLSSRVDAVAARVQTAVTMRKVTKSMAGVVKSMDSALKTMNLEKISQ  116 (203)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHHhchhhhhhccCCCCCCCCCCCCCCCCCCCCCCCH
Q psy16159         83 SAQEFQQGITRMNMTDEMIDEALDDMLEGSDDEQESNKIIDQVLGEIGIEISGKMANAPTVSGKVGEGSKSSSKTQVPSD  162 (175)
Q Consensus        83 ~M~ef~ke~~~~~i~~emm~d~~d~~~~~~~~eee~d~~v~qVl~E~gl~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~  162 (175)
                      +|+.|+++|+.+++..++|+++|.+....+.|++++|.++.+|+||+|++++..||....++.+.+++..      ..++
T Consensus       117 ~MDkFE~qFedldvqt~~me~~m~~st~l~tpq~~Vd~Lmq~vADeaGlElnq~lp~~~~~a~~~~t~~~------~~e~  190 (203)
T KOG3232|consen  117 LMDKFEKQFEDLDVQTEVMEKAMSGSTALSTPQGDVDSLMQQVADEAGLELNQELPQNVVPAISVKTSAV------VDEE  190 (203)
T ss_pred             HHHHHHHHhhhhhhHHHHHHHhccCcccccCChhHHHHHHHHHHHHhchhhhhcCCCCCCCCcCCCCccc------cchh
Confidence            9999999999999999999999999988889999999999999999999999999866433222232222      2345


Q ss_pred             HHHHHHHHHhhC
Q psy16159        163 AEIEAQLARLLG  174 (175)
Q Consensus       163 ddL~~RL~~Lr~  174 (175)
                      |||..||++||.
T Consensus       191 d~L~qRLaaLR~  202 (203)
T KOG3232|consen  191 DDLTQRLAALRA  202 (203)
T ss_pred             hHHHHHHHHHhc
Confidence            999999999996

>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7

Probab=99.85  E-value=1.5e-21  Score=151.80  Aligned_cols=140  Identities=23%  Similarity=0.360  Sum_probs=109.9

Q ss_pred             CHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Q psy16159          1 QELEIKKAAKEGDKIAATILAKQLIQIRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAMKNTADTMKNMNSIMKPEQI   80 (175)
Q Consensus         1 l~~~IKkaakkg~~~~arilAk~lvr~Rk~~~~l~~~ka~l~sv~~~l~~~~s~~~~~~~m~~~~~~M~~~n~~m~~~~l   80 (175)
                      +..+||+++++|++..|++|++..++.+++..+++.+..+|+.+..+++++..+..+..+|+.++++|+.+|+.++++++
T Consensus        27 ~~~~~k~~~~~~~~~~A~~~lk~~k~~~k~~~~~~~~~~~l~~~~~~ie~a~~~~~v~~al~~~~~~Lk~~~~~i~~~~v  106 (171)
T PF03357_consen   27 LEKKAKKAIKKGNKERAKIYLKRKKRLEKQLEKLLNQLSNLESVLLQIETAQSNQQVVKALKQSSKALKKINKQINLDKV  106 (171)
T ss_dssp             CHHHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS----SHHHHHHHHSTTSCCH
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHHhchhh--hhhccCCCC
Q psy16159         81 AASAQEFQQGITRMNMTDEMIDEALDDMLEGSDDEQESNKIIDQVLGEIGIEI--SGKMANAPT  142 (175)
Q Consensus        81 ~~~M~ef~ke~~~~~i~~emm~d~~d~~~~~~~~eee~d~~v~qVl~E~gl~~--~~~l~~~p~  142 (175)
                      ..+|++|..++++++.++++|.+.++..  .+.+++|.+++++++++|++.+.  ...||.+|+
T Consensus       107 ~~~~d~~~e~~e~~~ei~~~l~~~~~~~--~~~dd~ele~eL~~l~~e~~~~~~~~~~lp~~P~  168 (171)
T PF03357_consen  107 EKLMDDFQEEMEDQDEISEALSDSMDQV--DDVDDEELEEELEQLEDEIEEEEEEKQQLPSVPS  168 (171)
T ss_dssp             HHHHHHHHHHHHHHTS------------------TTSTTCHHHHHHHCCCTTS--SS-SS---H
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccccCC--CCCCHHHHHHHHHHHHHHHhhhhhccccCCcCCC
Confidence            9999999999999999999999998764  33456789999999999999877  667777665

The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.

>COG5491 VPS24 Conserved protein implicated in secretion [Cell motility and secretion]

Probab=99.58  E-value=3.4e-14  Score=114.61  Aligned_cols=155  Identities=21%  Similarity=0.290  Sum_probs=109.8

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHH
Q psy16159         13 DKIAATILAKQLIQIRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAMKNTADTMKNMNSIMK-PEQIAASAQEFQQGI   91 (175)
Q Consensus        13 ~~~~arilAk~lvr~Rk~~~~l~~~ka~l~sv~~~l~~~~s~~~~~~~m~~~~~~M~~~n~~m~-~~~l~~~M~ef~ke~   91 (175)
                      +....++|++.+++.|++..|+...+++|+++...+....       +|..+++.|..++..|| ++.|.++|+.|+..+
T Consensus        33 ~~~~~~~l~~~~~~~~~~~srL~~~~sRLqs~~~~~~e~~-------~m~~v~~~~~~a~~~mnel~~i~ri~~~~et~~  105 (204)
T COG5491          33 KAPNRRRLAEELYKLRKARSRLDASISRLQSLDTMLFEKV-------VMRQVSGDMAKAAMYMNELESIRRIMQLFETQF  105 (204)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566777777777777777777777777777666665555       55666666777777778 899999999999999


Q ss_pred             HHhhhhH---HHHHHHhhhhcC--CCCchHHHHHHHHHHHHHhchhhhhhccCCCC----CCCCCCCCC----CCCCCCC
Q psy16159         92 TRMNMTD---EMIDEALDDMLE--GSDDEQESNKIIDQVLGEIGIEISGKMANAPT----VSGKVGEGS----KSSSKTQ  158 (175)
Q Consensus        92 ~~~~i~~---emm~d~~d~~~~--~~~~eee~d~~v~qVl~E~gl~~~~~l~~~p~----~~~~~~~~~----~~~~~~~  158 (175)
                      .-|++..   |+|.+.++...+  ..++.+++|++|++|++|+|+++.....+.|.    +...|+...    .+-+...
T Consensus       106 ~~mE~~~~~le~m~e~~~v~~~~~v~~~l~~lde~v~~v~pEi~lel~~~~~~~~~~~~~~~~~~a~~~~ea~~ileea~  185 (204)
T COG5491         106 LALELVQLRLETMDELMDVVVGDPVLEDLEELDELVNKVLPEIGLELDESEQSLPANVVENGSVPAAVSPEARKILEEAE  185 (204)
T ss_pred             HHHHHHHHHHHHHHHHhccCccchhhhhHHHHHHHHHhhchhhhhhhhhHhhcchhhhhcccccccccChhhhhhHHHHH
Confidence            9999988   788777777664  44567899999999999999999855555554    111111111    1000011


Q ss_pred             CCCHHHHHHHHHHhhC
Q psy16159        159 VPSDAEIEAQLARLLG  174 (175)
Q Consensus       159 ~~~~ddL~~RL~~Lr~  174 (175)
                      ...++.|..||..|++
T Consensus       186 ~~aE~~l~e~~~~L~~  201 (204)
T COG5491         186 KIAEDRLQERLRELPA  201 (204)
T ss_pred             hhHHHHHHHHHHhccc
Confidence            2458899999999874

>PTZ00464 SNF-7-like protein; Provisional

Probab=99.18  E-value=2.1e-09  Score=87.59  Aligned_cols=123  Identities=16%  Similarity=0.155  Sum_probs=98.7

Q ss_pred             HHHHHHcCCh---HHHHHHHHHHHHHHHHH----HHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCH
Q psy16159          5 IKKAAKEGDK---IAATILAKQLIQIRKQK----TRTYAAQGKVHSIGIQNKTMGSNIKMAEAMKNTADTMKNMNSIMKP   77 (175)
Q Consensus         5 IKkaakkg~~---~~arilAk~lvr~Rk~~----~~l~~~ka~l~sv~~~l~~~~s~~~~~~~m~~~~~~M~~~n~~m~~   77 (175)
                      .|+.++++.-   ...|.-|..+.|.||..    .+++....+|+.+...|..+..+..+..+|+..+++|+.+|+.|++
T Consensus        44 ak~~~k~~~~~~~~~~K~~Al~~LK~KK~~E~ql~~l~~q~~nleq~~~~ie~a~~~~~vv~amk~g~kaLK~~~k~i~i  123 (211)
T PTZ00464         44 LKEQIQRTRGMTQSRHKQRAMQLLQQKRMYQNQQDMMMQQQFNMDQLQFTTESVKDTKVQVDAMKQAAKTLKKQFKKLNV  123 (211)
T ss_pred             HHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence            4455554422   23578888899888744    4688889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHHh
Q psy16159         78 EQIAASAQEFQQGITRMNMTDEMIDEALDDMLEGSDDEQESNKIIDQVLGEI  129 (175)
Q Consensus        78 ~~l~~~M~ef~ke~~~~~i~~emm~d~~d~~~~~~~~eee~d~~v~qVl~E~  129 (175)
                      .++..+|.++..+++..+=+++++...++..  .+.+|+|.+++++.+..|.
T Consensus       124 d~Vd~l~Dei~E~~e~~~EI~e~Ls~~~~~~--~~~DEdELe~ELe~Le~e~  173 (211)
T PTZ00464        124 DKVEDLQDELADLYEDTQEIQEIMGRAYDVP--DDIDEDEMLGELDALDFDM  173 (211)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC--CCCCHHHHHHHHHHHHHHH
Confidence            9999999999999999999999988765321  1234566777777666665

>KOG1656|consensus

Probab=99.18  E-value=2.2e-09  Score=86.15  Aligned_cols=130  Identities=14%  Similarity=0.193  Sum_probs=100.8

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Q psy16159          3 LEIKKAAKEGDKIAATILAKQLIQIRKQKTRTYAAQGKVHSIGIQ---NKTMGSNIKMAEAMKNTADTMKNMNSIMKPEQ   79 (175)
Q Consensus         3 ~~IKkaakkg~~~~arilAk~lvr~Rk~~~~l~~~ka~l~sv~~~---l~~~~s~~~~~~~m~~~~~~M~~~n~~m~~~~   79 (175)
                      .++...|++.-...-|.--..|-|.|..-..|.+.-..|..+..|   |.++.++..+..+|+..+++|+.+.+-||+.+
T Consensus        46 ~e~e~~A~k~~tkNKR~AlqaLkrKK~~E~qL~qidG~l~tie~Qr~alEnA~~n~Evl~~m~~~A~AmK~~h~~mDiDk  125 (221)
T KOG1656|consen   46 QEVENNARKYGTKNKRMALQALKRKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLDAMGSAAKAMKAAHKNMDIDK  125 (221)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHhccChhH
Confidence            345666777777766665556666666666666666666666665   78899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHhh--hhcCCCCchHHHHHHHHHHHHHhchh
Q psy16159         80 IAASAQEFQQGITRMNMTDEMIDEALD--DMLEGSDDEQESNKIIDQVLGEIGIE  132 (175)
Q Consensus        80 l~~~M~ef~ke~~~~~i~~emm~d~~d--~~~~~~~~eee~d~~v~qVl~E~gl~  132 (175)
                      +..+|++...|.+.+.-+++.++..+.  ..+|+++...|-+++=+..|+.--++
T Consensus       126 Vdd~MdeI~eQqe~a~eIseAiS~Pvg~~a~~DEDEL~~ELdeLeqeeld~~ll~  180 (221)
T KOG1656|consen  126 VDDLMDEIAEQQEVAEEISEAISAPVGFGADFDEDELMAELDELEQEELDKELLD  180 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCccccccccCHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999985  23665555566666666666654333

>PTZ00446 vacuolar sorting protein SNF7-like; Provisional

Probab=98.83  E-value=2.8e-07  Score=74.08  Aligned_cols=114  Identities=17%  Similarity=0.198  Sum_probs=88.4

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHHHH----HHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Q psy16159          4 EIKKAAKEGDKIAATILAKQLIQIRK----QKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAMKNTADTMKNMNSIMKPEQ   79 (175)
Q Consensus         4 ~IKkaakkg~~~~arilAk~lvr~Rk----~~~~l~~~ka~l~sv~~~l~~~~s~~~~~~~m~~~~~~M~~~n~~m~~~~   79 (175)
                      ..|+.+++|+...    |..+.|.||    +..+++.....|+.+...|..+..+..+..+|+..+++|+.+|+.|++.+
T Consensus        56 ~Ak~~~~~~kk~~----Al~~LkrKK~~E~ql~q~~~ql~nLEq~~~~iE~a~~~~ev~~aLk~g~~aLK~~~k~~~idk  131 (191)
T PTZ00446         56 EAKQKVEQNQMSN----AKILLKRKKLYEQEIENILNNRLTLEDNMINLENMHLHKIAVNALSYAANTHKKLNNEINTQK  131 (191)
T ss_pred             HHHHHHHcccHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence            4466777777554    666666665    44566677778888888899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHhhhhcCCCCchHHHHHHHHHH
Q psy16159         80 IAASAQEFQQGITRMNMTDEMIDEALDDMLEGSDDEQESNKIIDQV  125 (175)
Q Consensus        80 l~~~M~ef~ke~~~~~i~~emm~d~~d~~~~~~~~eee~d~~v~qV  125 (175)
                      +..+|.++..+++..+=+++++...+.+..    +|+|.+++++..
T Consensus       132 Vd~lmDei~E~~e~~~EIseaLs~~~~~~~----DEdELe~ELe~L  173 (191)
T PTZ00446        132 VEKIIDTIQENKDIQEEINQALSFNLLNNV----DDDEIDKELDLL  173 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCCCCC----CHHHHHHHHHHH
Confidence            999999999999999888888875432222    344555554443

>COG5491 VPS24 Conserved protein implicated in secretion [Cell motility and secretion]

Probab=98.25  E-value=1.6e-05  Score=64.46  Aligned_cols=117  Identities=16%  Similarity=0.213  Sum_probs=72.6

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHHHHHHH--HHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Q psy16159          4 EIKKAAKEGDKIAATILAKQLIQIRKQKT--RTYAAQGKVHSIGIQNKTMGSNIKMAEAMKNTADTMKNMNSIMKPEQIA   81 (175)
Q Consensus         4 ~IKkaakkg~~~~arilAk~lvr~Rk~~~--~l~~~ka~l~sv~~~l~~~~s~~~~~~~m~~~~~~M~~~n~~m~~~~l~   81 (175)
                      .+|.-.++|.....++-.+.-.+.|....  ++..++++|+.+.+||++..+       +-.-.-+|..+-..|...  .
T Consensus        15 ~~k~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~~~srL~~~~sRLqs~~~-------~~~e~~~m~~v~~~~~~a--~   85 (204)
T COG5491          15 ELKQEAKKGQVLLNEIAKKAPNRRRLAEELYKLRKARSRLDASISRLQSLDT-------MLFEKVVMRQVSGDMAKA--A   85 (204)
T ss_pred             hhhhHhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhccHHHH--H
Confidence            45666666665554444455555555555  999999999999999998773       334456777777775444  4


Q ss_pred             HHHH------HHHHHHHHhhhhHHHHH---HHhhhhcCCCC--chHHHHHHHHHHHHHh
Q psy16159         82 ASAQ------EFQQGITRMNMTDEMID---EALDDMLEGSD--DEQESNKIIDQVLGEI  129 (175)
Q Consensus        82 ~~M~------ef~ke~~~~~i~~emm~---d~~d~~~~~~~--~eee~d~~v~qVl~E~  129 (175)
                      .+|+      .+.+.|+.+-..=|.+.   +.++..++...  +..+..+.++..+..+
T Consensus        86 ~~mnel~~i~ri~~~~et~~~~mE~~~~~le~m~e~~~v~~~~~v~~~l~~lde~v~~v  144 (204)
T COG5491          86 MYMNELESIRRIMQLFETQFLALELVQLRLETMDELMDVVVGDPVLEDLEELDELVNKV  144 (204)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhhhhHHHHHHHHHhh
Confidence            4444      46667777766666666   45554444433  3444445555555544

>KOG2910|consensus

Probab=98.22  E-value=0.00054  Score=54.92  Aligned_cols=127  Identities=13%  Similarity=0.271  Sum_probs=85.0

Q ss_pred             HHHHHHcCChHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Q psy16159          5 IKKAAKEGDKIAATILAKQLIQIRKQKTRT-YAAQGKVHSIGIQ---NKTMGSNIKMAEAMKNTADTMKNMNSIMKPEQI   80 (175)
Q Consensus         5 IKkaakkg~~~~arilAk~lvr~Rk~~~~l-~~~ka~l~sv~~~---l~~~~s~~~~~~~m~~~~~~M~~~n~~m~~~~l   80 (175)
                      .|++++.|+.+-|+.+-    +.++....| -+..-||..+.-.   |.-..-..++...++.=+.+++++|+.|++..+
T Consensus        46 Ar~lird~rKdrAlllL----KkKryQE~Ll~qt~~qL~nlEqmvsdiEft~vqk~V~~gLk~GN~~lkkl~~~~~ideV  121 (209)
T KOG2910|consen   46 ARDLIRDGRKDRALLLL----KKKRYQEELLTQTDNQLINLEQMVSDIEFTQVQKKVMEGLKQGNEALKKLQQEFDIDEV  121 (209)
T ss_pred             HHHHHHhChHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence            34555555555544432    223333322 2333344443333   333344456777888888999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHHhchhhhhhccCCCC
Q psy16159         81 AASAQEFQQGITRMNMTDEMIDEALDDMLEGSDDEQESNKIIDQVLGEIGIEISGKMANAPT  142 (175)
Q Consensus        81 ~~~M~ef~ke~~~~~i~~emm~d~~d~~~~~~~~eee~d~~v~qVl~E~gl~~~~~l~~~p~  142 (175)
                      .++|++-....+--+=+++|+.+.|..     ++++++.++++-+..|.-.+  .++|.+|+
T Consensus       122 ~rimddt~ea~~YQ~Ein~~L~~~ls~-----~dEddi~~EldaLese~~~e--~e~PevPs  176 (209)
T KOG2910|consen  122 DRIMDDTQEAIEYQDEINAILSGSLSA-----EDEDDILAELDALESELEVE--AELPEVPS  176 (209)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHhhccc-----ccHHHHHHHHHHHHHHhhhh--hhcCCCCC
Confidence            999999999999999999999998873     34566777777776666433  57888887

>KOG2911|consensus

Probab=97.60  E-value=0.0036  Score=55.73  Aligned_cols=121  Identities=16%  Similarity=0.206  Sum_probs=94.9

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh-cCCHHHHH
Q psy16159          3 LEIKKAAKEGDKIAATILAKQLIQIRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAMKNTADTMKNMNS-IMKPEQIA   81 (175)
Q Consensus         3 ~~IKkaakkg~~~~arilAk~lvr~Rk~~~~l~~~ka~l~sv~~~l~~~~s~~~~~~~m~~~~~~M~~~n~-~m~~~~l~   81 (175)
                      .+.+.+.|.|....|..|.+.--+.-|...+....--+|.+|-.++.++.++.-+..+++.-+.+|+.++. -...+++.
T Consensus       261 ~~~r~~~k~g~K~iA~~ylr~rk~~eK~~er~~~~l~~l~~vl~~Id~s~~nkvvl~AyksGs~alK~il~~~~s~ekVe  340 (439)
T KOG2911|consen  261 EKLRQALKEGKKQIAITYLRARKLLEKDLERKVSSLNNLETVLSQIDNSQTNKVVLQAYKSGSEALKAILAQGGSTEKVE  340 (439)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHhHHHHHHHHhccCChhhHH
Confidence            35678999999999999999999999999999999999999999999999999999999999999999999 45567788


Q ss_pred             HHHHHHHHHHHHhhhhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHHh
Q psy16159         82 ASAQEFQQGITRMNMTDEMIDEALDDMLEGSDDEQESNKIIDQVLGEI  129 (175)
Q Consensus        82 ~~M~ef~ke~~~~~i~~emm~d~~d~~~~~~~~eee~d~~v~qVl~E~  129 (175)
                      .+|.+...-+..-.    -++++|.+.+....  +..|+.+.|=|+++
T Consensus       341 d~Ldev~et~d~~~----EV~~~la~~~~~~~--d~~de~lEkEL~~L  382 (439)
T KOG2911|consen  341 DVLDEVNETLDRQE----EVEDALASYNVNNI--DFEDEDLEKELEDL  382 (439)
T ss_pred             HHHHHHHHHHhhHH----HHHHHHhcCCCCCC--ccchHHHHHHHHHH
Confidence            99988877666544    44555554433211  22334444444444

>KOG1655|consensus

Probab=96.98  E-value=0.11  Score=41.95  Aligned_cols=114  Identities=15%  Similarity=0.180  Sum_probs=83.2

Q ss_pred             hHHHHHHHHHHHHHHHH----HHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy16159         14 KIAATILAKQLIQIRKQ----KTRTYAAQGKVHSIGIQNKTMGSNIKMAEAMKNTADTMKNMNSIMKPEQIAASAQEFQQ   89 (175)
Q Consensus        14 ~~~arilAk~lvr~Rk~----~~~l~~~ka~l~sv~~~l~~~~s~~~~~~~m~~~~~~M~~~n~~m~~~~l~~~M~ef~k   89 (175)
                      ..+.|--|=.+++.||.    ...|+.-.-.|+.+++-.++..-+.....+|+...+.|+...+.+|+.+|...=+++.-
T Consensus        58 q~~~KqrAlrVLkQKK~yE~q~d~L~~QsfNMeQa~~t~e~LKdtq~Tv~AmK~~~k~mK~~ykkvnId~IedlQDem~D  137 (218)
T KOG1655|consen   58 QNALKQRALRVLKQKKMYENQKDSLDQQSFNMEQANFTAESLKDTQATVAAMKDTNKEMKKQYKKVNIDKIEDLQDEMED  137 (218)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Confidence            34455555555555543    33455555667777777788888888889999999999999999999999887777777


Q ss_pred             HHHHhhhhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHHhc
Q psy16159         90 GITRMNMTDEMIDEALDDMLEGSDDEQESNKIIDQVLGEIG  130 (175)
Q Consensus        90 e~~~~~i~~emm~d~~d~~~~~~~~eee~d~~v~qVl~E~g  130 (175)
                      =|+..+=++|.+....+.-   +.+|++.+.+++-..+|..
T Consensus       138 lmd~a~EiQE~Lgr~y~~p---eide~dL~aELdaL~~E~d  175 (218)
T KOG1655|consen  138 LMDQADEIQEVLGRNYNTP---DIDEADLDAELDALGQELD  175 (218)
T ss_pred             HHHHHHHHHHHHhhccCCC---CcCHHHHHHHHHHHHhHhh
Confidence            7777788888888776542   2456677777777766653

>PTZ00464 SNF-7-like protein; Provisional

Probab=94.20  E-value=2.6  Score=34.46  Aligned_cols=97  Identities=6%  Similarity=0.077  Sum_probs=53.4

Q ss_pred             HHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhHHHHHHH--hhhhcCC
Q psy16159         34 TYAAQGKVHSIGIQNKTMGSNIKMAEAMKNTADTMKNMNSIMKPEQIAASAQEFQQGITRMNMTDEMIDEA--LDDMLEG  111 (175)
Q Consensus        34 l~~~ka~l~sv~~~l~~~~s~~~~~~~m~~~~~~M~~~n~~m~~~~l~~~M~ef~ke~~~~~i~~emm~d~--~d~~~~~  111 (175)
                      |-....++......|..+..+...+..=..+..+|+..|+.  +..+.+-| ..++-=.-++=+.|+|+..  +.+++..
T Consensus        73 ~E~ql~~l~~q~~nleq~~~~ie~a~~~~~vv~amk~g~ka--LK~~~k~i-~id~Vd~l~Dei~E~~e~~~EI~e~Ls~  149 (211)
T PTZ00464         73 YQNQQDMMMQQQFNMDQLQFTTESVKDTKVQVDAMKQAAKT--LKKQFKKL-NVDKVEDLQDELADLYEDTQEIQEIMGR  149 (211)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhcC-CHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            33344455556666666666666666666677778777777  44444433 2222222223333333322  3334433


Q ss_pred             CC--chHHHHHHHHHHHHHhchhh
Q psy16159        112 SD--DEQESNKIIDQVLGEIGIEI  133 (175)
Q Consensus       112 ~~--~eee~d~~v~qVl~E~gl~~  133 (175)
                      ..  +.+.-+.++..-|+++.-++
T Consensus       150 ~~~~~~~~DEdELe~ELe~Le~e~  173 (211)
T PTZ00464        150 AYDVPDDIDEDEMLGELDALDFDM  173 (211)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHH
Confidence            21  34566778888888888775

>PTZ00446 vacuolar sorting protein SNF7-like; Provisional

Probab=93.64  E-value=3.2  Score=33.52  Aligned_cols=61  Identities=11%  Similarity=0.011  Sum_probs=34.6

Q ss_pred             hHHHHHHHHHHHHHHH---------HHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16159         14 KIAATILAKQLIQIRK---------QKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAMKNTADTMKNMNSI   74 (175)
Q Consensus        14 ~~~arilAk~lvr~Rk---------~~~~l~~~ka~l~sv~~~l~~~~s~~~~~~~m~~~~~~M~~~n~~   74 (175)
                      ++.....|+.+++..+         .+..|-..-.++.+....|.++..+...+..=..+..+|+..|+.
T Consensus        50 Ie~e~~~Ak~~~~~~kk~~Al~~LkrKK~~E~ql~q~~~ql~nLEq~~~~iE~a~~~~ev~~aLk~g~~a  119 (191)
T PTZ00446         50 IKQLEIEAKQKVEQNQMSNAKILLKRKKLYEQEIENILNNRLTLEDNMINLENMHLHKIAVNALSYAANT  119 (191)
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445556666665443         233333444555555666666666666665556666667766666

>PRK10698 phage shock protein PspA; Provisional

Probab=93.50  E-value=3.1  Score=34.14  Aligned_cols=88  Identities=7%  Similarity=0.101  Sum_probs=57.3

Q ss_pred             HHHHHHHHHcCChHHHHH-------HHHHHHHHHHHHHHHH----HHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy16159          2 ELEIKKAAKEGDKIAATI-------LAKQLIQIRKQKTRTY----AAQGKVHSIGIQNKTMGSNIKMAEAMKNTADTMKN   70 (175)
Q Consensus         2 ~~~IKkaakkg~~~~ari-------lAk~lvr~Rk~~~~l~----~~ka~l~sv~~~l~~~~s~~~~~~~m~~~~~~M~~   70 (175)
                      +.+...|+.+|+-+-||-       |+..+-..+.+....-    .++.++..+..++..+.+-...--+=..++.+..+
T Consensus        72 e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~  151 (222)
T PRK10698         72 QEKAELALRKEKEDLARAALIEKQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRD  151 (222)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            346678999999999999       8888887776655443    34555666666666666665555555566666666


Q ss_pred             HHhcCCHHHHHHHHHHHHH
Q psy16159         71 MNSIMKPEQIAASAQEFQQ   89 (175)
Q Consensus        71 ~n~~m~~~~l~~~M~ef~k   89 (175)
                      +|..+.--.....|..|++
T Consensus       152 ~~~~~~~~~~~~a~~~f~r  170 (222)
T PRK10698        152 VRRQLDSGKLDEAMARFES  170 (222)
T ss_pred             HHHHHhCCCcchHHHHHHH
Confidence            6666544344455555444

>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7

Probab=92.98  E-value=0.11  Score=39.83  Aligned_cols=117  Identities=15%  Similarity=0.172  Sum_probs=57.5

Q ss_pred             HcCChHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH----
Q psy16159         10 KEGDKIAATILAKQLIQIRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAMKNTADTMKNMNSIMKPEQIAASAQ----   85 (175)
Q Consensus        10 kkg~~~~arilAk~lvr~Rk~~~~l~~~ka~l~sv~~~l~~~~s~~~~~~~m~~~~~~M~~~n~~m~~~~l~~~M~----   85 (175)
                      ++--...-+..|+.+.|.++...+.   ..++.....+|.+.......+.....+..+|+..++.  +.++.+.|.    
T Consensus        32 k~~~~~~~~~~A~~~lk~~k~~~k~---~~~~~~~~~~l~~~~~~ie~a~~~~~v~~al~~~~~~--Lk~~~~~i~~~~v  106 (171)
T PF03357_consen   32 KKAIKKGNKERAKIYLKRKKRLEKQ---LEKLLNQLSNLESVLLQIETAQSNQQVVKALKQSSKA--LKKINKQINLDKV  106 (171)
T ss_dssp             HHHHCTT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHSSS----SHH--HHHHHHSTTSCCH
T ss_pred             HHHHHcCChHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhhhhhhH
Confidence            3333444556677777766665544   4466777778888888888888888888888888877  445554443    


Q ss_pred             -HHHHHHHHhhhhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHHhchhh
Q psy16159         86 -EFQQGITRMNMTDEMIDEALDDMLEGSDDEQESNKIIDQVLGEIGIEI  133 (175)
Q Consensus        86 -ef~ke~~~~~i~~emm~d~~d~~~~~~~~eee~d~~v~qVl~E~gl~~  133 (175)
                       ++-.+|...--..+.++++|.+.+  ....+..+++++..|+++.-+.
T Consensus       107 ~~~~d~~~e~~e~~~ei~~~l~~~~--~~~~~~dd~ele~eL~~l~~e~  153 (171)
T PF03357_consen  107 EKLMDDFQEEMEDQDEISEALSDSM--DQVDDVDDEELEEELEQLEDEI  153 (171)
T ss_dssp             HHHHHHHHHHHHHHTS------------------TTSTTCHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccc--cCCCCCCHHHHHHHHHHHHHHH
Confidence             222222222222222233332211  1114556677777887774433

The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.

>KOG3231|consensus

Probab=92.29  E-value=1.3  Score=35.12  Aligned_cols=108  Identities=16%  Similarity=0.219  Sum_probs=74.9

Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH-----HHHHHHHHhhhhHHHHH
Q psy16159         28 RKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAMKNTADTMKNMNSIMKPEQIAASAQ-----EFQQGITRMNMTDEMID  102 (175)
Q Consensus        28 Rk~~~~l~~~ka~l~sv~~~l~~~~s~~~~~~~m~~~~~~M~~~n~~m~~~~l~~~M~-----ef~ke~~~~~i~~emm~  102 (175)
                      -||...|..-|++-=+++.+++++..+.++.+++.+.+.+|+.--+.|  ..+.+.|+     +--++|.+..++=||-+
T Consensus        61 AKQLV~lRkQKtrt~a~s~ki~s~~~QnK~M~s~~km~~AMgTTaKTM--~amNk~M~pek~~~tmr~FQ~anmKMemTe  138 (208)
T KOG3231|consen   61 AKQLVHLRKQKTRTFAVSSKITSMSTQNKVMNSQMKMAGAMGTTAKTM--QAMNKKMDPEKTLQTMRNFQKANMKMEMTE  138 (208)
T ss_pred             HHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHhchHHHHH--HHHHccCCHHHHHHHHHHHHHHHHHhhhHH
Confidence            466666777778888899999999999999999888888888766553  22333332     34578899999999999


Q ss_pred             HHhhhhcCCCCchHHHHHHHHHHHHHhchhhhhhc
Q psy16159        103 EALDDMLEGSDDEQESNKIIDQVLGEIGIEISGKM  137 (175)
Q Consensus       103 d~~d~~~~~~~~eee~d~~v~qVl~E~gl~~~~~l  137 (175)
                      +.+++.+|+--+...-+++-+-|....--+++=.+
T Consensus       139 EMiNDTLDdild~sgDeeEs~aiVNqVLDEIGIEi  173 (208)
T KOG3231|consen  139 EMINDTLDDILDGSGDEEESQAIVNQVLDEIGIEI  173 (208)
T ss_pred             HHHHhhHHHHhcCCCcHHHHHHHHHHHHHHhhhhh
Confidence            99998876543334445556666665533333333

>KOG3230|consensus

Probab=89.71  E-value=9.3  Score=31.14  Aligned_cols=114  Identities=15%  Similarity=0.239  Sum_probs=75.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-H
Q psy16159         14 KIAATILAKQLIQIRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAMKNTADTMKNMNSIMKPEQIAASAQEFQQGI-T   92 (175)
Q Consensus        14 ~~~arilAk~lvr~Rk~~~~l~~~ka~l~sv~~~l~~~~s~~~~~~~m~~~~~~M~~~n~~m~~~~l~~~M~ef~ke~-~   92 (175)
                      .=-.|-|.+.....|.+   +...+-+++++.+.-+-+.+|.-++++|....+.|.    +-.+.+|-.-...-+..| +
T Consensus        65 LvRtR~~i~kf~~~kaq---iqaVSl~iQtlkss~sma~aMkGaTkam~~MNrqmn----lpq~qkIm~eFekQse~Mdm  137 (224)
T KOG3230|consen   65 LVRTRRYIKKFQNMKAQ---IQAVSLRIQTLKSSTSMAQAMKGATKAMAGMNRQMN----LPQIQKIMQEFEKQSEIMDM  137 (224)
T ss_pred             HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhccC----hHHHHHHHHHHHHHHHHHHH
Confidence            33456677777666654   455667888888888888888899999887766543    222334333333333333 3


Q ss_pred             HhhhhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHHhchhhh
Q psy16159         93 RMNMTDEMIDEALDDMLEGSDDEQESNKIIDQVLGEIGIEIS  134 (175)
Q Consensus        93 ~~~i~~emm~d~~d~~~~~~~~eee~d~~v~qVl~E~gl~~~  134 (175)
                      +-.+..+.|+|+|++.-++++.++=++.+++.|==.++-+++
T Consensus       138 ~~Emm~daIDdal~~~edEEEtd~lvnqVLDEiGvdl~~qL~  179 (224)
T KOG3230|consen  138 KEEMMDDAIDDALGDDEDEEETDDLVNQVLDEIGVDLASQLS  179 (224)
T ss_pred             HHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHcccHHHHhc
Confidence            446778999999988777777777788888876555554443

>PF03398 Ist1: Regulator of Vps4 activity in the MVB pathway; InterPro: IPR005061 This is a eukaryotic protein family of unknown function

Probab=88.49  E-value=0.42  Score=37.49  Aligned_cols=131  Identities=14%  Similarity=0.143  Sum_probs=76.5

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHhcCCHHHH
Q psy16159          2 ELEIKKAAKEGDKIAATILAKQLIQIRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAMK-NTADTMKNMNSIMKPEQI   80 (175)
Q Consensus         2 ~~~IKkaakkg~~~~arilAk~lvr~Rk~~~~l~~~ka~l~sv~~~l~~~~s~~~~~~~m~-~~~~~M~~~n~~m~~~~l   80 (175)
                      .++|-..++.|+.+.||+-++++||--+...=|--+---.+-+..++.........-..+. .++.++=...+.-++|++
T Consensus        26 rkdIa~LL~~g~~~~Ar~rvE~li~ed~~~e~~e~Le~yce~l~~r~~~i~~~k~~p~~l~eAi~siiyAa~r~~elpEL  105 (165)
T PF03398_consen   26 RKDIAQLLKNGKEESARIRVEQLIREDNMIEAYEILELYCELLLARFSLIEKSKECPPELKEAISSIIYAAPRCGELPEL  105 (165)
T ss_dssp             HHHHHHHHCCT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCT-TSSSCCHHHHHHHHHHHHHHHTTTCCH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCHHHHHHHHHHHHHhhhccCChhH
Confidence            4678888999999999999999999999998888888777777777766665433322222 223445555555577776


Q ss_pred             HHH----HHHHHHHHHHhhhh--HHHHHHHhhhhcCCCCc-hHHHHHHHHHHHHHhchh
Q psy16159         81 AAS----AQEFQQGITRMNMT--DEMIDEALDDMLEGSDD-EQESNKIIDQVLGEIGIE  132 (175)
Q Consensus        81 ~~~----M~ef~ke~~~~~i~--~emm~d~~d~~~~~~~~-eee~d~~v~qVl~E~gl~  132 (175)
                      ..+    +..|.++|...-+-  .-.++.-+=.-+...-| ++.++..+..|+.|+|++
T Consensus       106 ~~vr~~l~~kyG~~f~~~a~~~~~~~Vn~~iv~kLs~~~p~~~~v~~~L~eIA~e~~i~  164 (165)
T PF03398_consen  106 QEVRKQLAEKYGKEFVEAAMENRDNGVNPRIVEKLSVKPPSEELVEKYLKEIAKEYGIP  164 (165)
T ss_dssp             HHHHHHHHCCC-HHHHHHHHTTTTTTS-HHHHHHCS-S---CCHHHHHHHHHHHHCT-S
T ss_pred             HHHHHHHHHHhCHHHHHHHHHhcCCCcCHHHHHHcCCCCcCHHHHHHHHHHHHHHcCCC
Confidence            543    34466776433111  11122211111111112 356677777777777753

; PDB: 3GGZ_B 3GGY_B 3FRR_A 3FRS_A.

>TIGR02977 phageshock_pspA phage shock protein A

Probab=84.26  E-value=21  Score=28.99  Aligned_cols=92  Identities=10%  Similarity=0.042  Sum_probs=48.4

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHHHHH-----------HHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy16159          2 ELEIKKAAKEGDKIAATILAKQLIQIRKQK-----------TRTYAAQGKVHSIGIQNKTMGSNIKMAEAMKNTADTMKN   70 (175)
Q Consensus         2 ~~~IKkaakkg~~~~arilAk~lvr~Rk~~-----------~~l~~~ka~l~sv~~~l~~~~s~~~~~~~m~~~~~~M~~   70 (175)
                      +...+.|+++|+-+-||-.+..-.....+.           ...-.++.+|..+..++..+.+....-.+=...+.+...
T Consensus        72 ~~~A~~Al~~G~EdLAr~Al~~k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~  151 (219)
T TIGR02977        72 QEKAELALSKGREDLARAALIEKQKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSRLD  151 (219)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456788999999887775533222222222           223344555555555566666555544343445555555


Q ss_pred             HHhcCCHHHHHHHHHHHHHHHHH
Q psy16159         71 MNSIMKPEQIAASAQEFQQGITR   93 (175)
Q Consensus        71 ~n~~m~~~~l~~~M~ef~ke~~~   93 (175)
                      +|..+.--.....+..|++=-++
T Consensus       152 ~~~~~~~~~~~~a~~~fer~e~k  174 (219)
T TIGR02977       152 VRRQLDSGRSDEAMARFEQYERR  174 (219)
T ss_pred             HHHHHhCCCchhHHHHHHHHHHH
Confidence            65554333334555555443333

Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.

>KOG2910|consensus

Probab=82.04  E-value=26  Score=28.47  Aligned_cols=85  Identities=16%  Similarity=0.240  Sum_probs=55.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHh-h--------HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q psy16159         14 KIAATILAKQLIQIRKQKTRTYAAQ-G--------KVHSIGIQNKTMGSNIKMAEAMKNTADTMKNMNSIMKPEQIAASA   84 (175)
Q Consensus        14 ~~~arilAk~lvr~Rk~~~~l~~~k-a--------~l~sv~~~l~~~~s~~~~~~~m~~~~~~M~~~n~~m~~~~l~~~M   84 (175)
                      .+.=|-+|++|||-..--.-++.+| -        |-..--..|..+.++..++..-+.+...++.-|..  +.+++..|
T Consensus        39 le~Er~~Ar~lird~rKdrAlllLKkKryQE~Ll~qt~~qL~nlEqmvsdiEft~vqk~V~~gLk~GN~~--lkkl~~~~  116 (209)
T KOG2910|consen   39 LEAERQLARDLIRDGRKDRALLLLKKKRYQEELLTQTDNQLINLEQMVSDIEFTQVQKKVMEGLKQGNEA--LKKLQQEF  116 (209)
T ss_pred             HHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhc
Confidence            5677899999998644333232222 2        22223334778888889998889999999999998  66666533


Q ss_pred             HHHHHHHHHhhhhHHHHHHHhhhh
Q psy16159         85 QEFQQGITRMNMTDEMIDEALDDM  108 (175)
Q Consensus        85 ~ef~ke~~~~~i~~emm~d~~d~~  108 (175)
                      .        .+=.+.+|+|+=+..
T Consensus       117 ~--------ideV~rimddt~ea~  132 (209)
T KOG2910|consen  117 D--------IDEVDRIMDDTQEAI  132 (209)
T ss_pred             C--------HHHHHHHHHhHHHHH
Confidence            2        233666777765543

>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription

Probab=81.09  E-value=27  Score=28.04  Aligned_cols=73  Identities=16%  Similarity=0.154  Sum_probs=45.8

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHH-----------HhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy16159          2 ELEIKKAAKEGDKIAATILAKQLIQIRKQKTRTYA-----------AQGKVHSIGIQNKTMGSNIKMAEAMKNTADTMKN   70 (175)
Q Consensus         2 ~~~IKkaakkg~~~~arilAk~lvr~Rk~~~~l~~-----------~ka~l~sv~~~l~~~~s~~~~~~~m~~~~~~M~~   70 (175)
                      +...+.|+++|+-+.||-++........++..|-.           ++.++..+..++..+.+-..+..+-..++++-..
T Consensus        71 ~~~A~~Al~~g~edLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~~  150 (221)
T PF04012_consen   71 EKQAELALAAGREDLAREALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAKAQKK  150 (221)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45678899999999999988888777766554433           3444444555555555555555444444555444


Q ss_pred             HHhc
Q psy16159         71 MNSI   74 (175)
Q Consensus        71 ~n~~   74 (175)
                      +|..
T Consensus       151 ~~~~  154 (221)
T PF04012_consen  151 VNEA  154 (221)
T ss_pred             HHHH
Confidence            4443

The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	175
3frt_A	218	The Structure Of Human Chmp3 (Residues 8 - 222). Le		2e-10
2gd5_A	179	Structural Basis For Budding By The Escrtiii Factor		3e-08
3frv_A	152	Structure Of Human Chmp3 (Residues 1-150) Length =		9e-08

>pdb|3FRT|A Chain A, The Structure Of Human Chmp3 (Residues 8 - 222). Length = 218

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 84/138 (60%), Gaps = 3/138 (2%)
Query: 5   IKKAAKEGDKIAATILAKQLIQIRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAMKNT 64
           +K AAK+G K    +LAK++I+ RK  ++ YA++  ++S+ +  K   + +++A +++ +
Sbjct: 44  VKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKS 103
Query: 65  ADTMKNMNSIMKPEQIAASAQEFQQGITRMNMTDEMIDEALDDMLEGSDDEQESNKIIDQ 124
            + MK M S++K  +I A+ +E  + + +  + +EM+++  + M +  + E+E+   ID+
Sbjct: 104 TEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDR 163
Query: 125 VLGEIGIEISGKMANAPT 142
           +L EI    +G +  AP+
Sbjct: 164 ILFEI---TAGALGKAPS 178

>pdb|2GD5|A Chain A, Structural Basis For Budding By The Escrtiii Factor Chmp3 Length = 179

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 78/138 (56%), Gaps = 3/138 (2%)
Query: 5   IKKAAKEGDKIAATILAKQLIQIRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAMKNT 64
           +K AAK+G K    +LAK+ I+ RK  ++ YA++   +S+    K   + +++A +++ +
Sbjct: 44  VKDAAKKGQKDVCIVLAKEXIRSRKAVSKLYASKAHXNSVLXGXKNQLAVLRVAGSLQKS 103
Query: 65  ADTMKNMNSIMKPEQIAASAQEFQQGITRMNMTDEMIDEALDDMLEGSDDEQESNKIIDQ 124
            +  K   S++K  +I A+ +E  +   +  + +EM+++  + M +  + E+E+   ID+
Sbjct: 104 TEVXKAXQSLVKIPEIQATXRELSKEXXKAGIIEEMLEDTFESMDDQEEXEEEAEXEIDR 163
Query: 125 VLGEIGIEISGKMANAPT 142
           +L EI    +G +  AP+
Sbjct: 164 ILFEI---TAGALGKAPS 178

>pdb|3FRV|A Chain A, Structure Of Human Chmp3 (Residues 1-150) Length = 152

Iteration: 1
 Score = 52.8 bits (125), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 27/102 (26%), Positives = 64/102 (62%)
Query: 5   IKKAAKEGDKIAATILAKQLIQIRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAMKNT 64
           +K AAK+G K    +LAK++I+ RK  ++ YA++  ++S+ +  K   + +++A +++ +
Sbjct: 50  VKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKS 109
Query: 65  ADTMKNMNSIMKPEQIAASAQEFQQGITRMNMTDEMIDEALD 106
            + MK M S++K  +I A+ +E  + + +  + +EM+++  +
Sbjct: 110 TEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFE 151
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	175
3frt_A	218	Charged multivesicular BODY protein 3; ESCRT, ESCR	2e-21
2gd5_A	179	Charged multivesicular BODY protein 3; CHMP3, ESCR	2e-20

>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens} Length = 218

 Score = 86.0 bits (212), Expect = 2e-21
 Identities = 40/163 (24%), Positives = 91/163 (55%)

Query: 2   ELEIKKAAKEGDKIAATILAKQLIQIRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAM 61
           +  +K AAK+G K    +LAK++I+ RK  ++ YA++  ++S+ +  K   + +++A ++
Sbjct: 41  KRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSL 100

Query: 62  KNTADTMKNMNSIMKPEQIAASAQEFQQGITRMNMTDEMIDEALDDMLEGSDDEQESNKI 121
           + + + MK M S++K  +I A+ +E  + + +  + +EM+++  + M +  + E+E+   
Sbjct: 101 QKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEME 160

Query: 122 IDQVLGEIGIEISGKMANAPTVSGKVGEGSKSSSKTQVPSDAE 164
           ID++L EI     GK  +  T +    E   + + ++   + E
Sbjct: 161 IDRILFEITAGALGKAPSKVTDALPEPEPPGAMAASEDEEEEE 203

>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A Length = 179

 Score = 82.5 bits (203), Expect = 2e-20
 Identities = 37/136 (27%), Positives = 81/136 (59%)

Query: 2   ELEIKKAAKEGDKIAATILAKQLIQIRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAM 61
           +  +K AAK+G K    +LAK++I+ RK  ++ YA++  ++S+ +  K   + +++A ++
Sbjct: 41  KRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSL 100

Query: 62  KNTADTMKNMNSIMKPEQIAASAQEFQQGITRMNMTDEMIDEALDDMLEGSDDEQESNKI 121
           + + + MK M S++K  +I A+ +E  + + +  + +EM+++  + M +  + E+E+   
Sbjct: 101 QKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEME 160

Query: 122 IDQVLGEIGIEISGKM 137
           ID++L EI     GK 
Sbjct: 161 IDRILFEITAGALGKA 176

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	175
3frt_A	218	Charged multivesicular BODY protein 3; ESCRT, ESCR	100.0
2gd5_A	179	Charged multivesicular BODY protein 3; CHMP3, ESCR	100.0
3eab_G	50	CHMP1B; spastin, MIT, ESCRT, alternative splicing,	98.92
3um3_B	104	Charged multivesicular BODY protein 4B; alpha-heli	97.3
2v6x_B	54	DOA4-independent degradation protein 4; protein tr	97.04
3frt_A	218	Charged multivesicular BODY protein 3; ESCRT, ESCR	95.47
2gd5_A	179	Charged multivesicular BODY protein 3; CHMP3, ESCR	93.03
3ggz_E	29	Vacuolar protein-sorting-associated protein 46; no	91.18
2xze_Q	40	Charged multivesicular BODY protein 3; hydrolase-p	84.91
2hh7_A	119	Hypothetical protein CSOR; 4-helix bundle, unknown	83.82
3ggy_A	193	Increased sodium tolerance protein 1; ESCRT-III li	82.57
3frr_A	191	Uncharacterized protein KIAA0174; ESCRT, ESCRT-III	82.45

>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}

Probab=100.00  E-value=1.6e-46  Score=304.75  Aligned_cols=171  Identities=25%  Similarity=0.429  Sum_probs=107.3

Q ss_pred             CHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Q psy16159          1 QELEIKKAAKEGDKIAATILAKQLIQIRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAMKNTADTMKNMNSIMKPEQI   80 (175)
Q Consensus         1 l~~~IKkaakkg~~~~arilAk~lvr~Rk~~~~l~~~ka~l~sv~~~l~~~~s~~~~~~~m~~~~~~M~~~n~~m~~~~l   80 (175)
                      ++.+||++||+||+++|||||++|||+|+++.+||++++||++|++||++++++.+|+++|++++++|+.||++||+|+|
T Consensus        40 ~~~~IKkaakkg~~~~arilAkelVR~Rk~~~rl~~~kaqL~sV~~rlqt~~s~~~v~~sM~~st~~M~~~n~~m~l~~i  119 (218)
T 3frt_A           40 VKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEI  119 (218)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----CCCCCHHHHHHHHHSTTSHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence            36799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHHhchhhhhhccCCCC-CCCCCCCCCC---CCCC
Q psy16159         81 AASAQEFQQGITRMNMTDEMIDEALDDMLEGSDDEQESNKIIDQVLGEIGIEISGKMANAPT-VSGKVGEGSK---SSSK  156 (175)
Q Consensus        81 ~~~M~ef~ke~~~~~i~~emm~d~~d~~~~~~~~eee~d~~v~qVl~E~gl~~~~~l~~~p~-~~~~~~~~~~---~~~~  156 (175)
                      +.+|++|++||+++||++|||+|+|+++++.+++++|+|++|+|||+|+|   .++|+.+|+ +.+.++.+..   +.+.
T Consensus       120 ~~tM~efekE~~k~~i~eEmm~Da~d~~~~~~~~eee~d~~v~kVldEi~---~~~l~~~p~~~~~~~~~~~~~~~~~~~  196 (218)
T 3frt_A          120 QATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRILFEIT---AGALGKAPSKVTDALPEPEPPGAMAAS  196 (218)
T ss_dssp             HHHHHHHHHHHHHHSCC----------------CTTSTTTHHHHHHHTC-------------------------------
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHhcccccCCchHHHHHHHHHHHHHHh---HhHhhcCCCCCCCCCCCcccccccccc
Confidence            99999999999999999999999999998888899999999999999998   567888876 2232222211   0000


Q ss_pred             ----CCCCCHHHHHHHHHHhhC
Q psy16159        157 ----TQVPSDAEIEAQLARLLG  174 (175)
Q Consensus       157 ----~~~~~~ddL~~RL~~Lr~  174 (175)
                          ..+.+.+++..||++||+
T Consensus       197 ~~~e~~~~~~~~m~~rl~al~s  218 (218)
T 3frt_A          197 EDEEEEEEALEAMQSRLATLRS  218 (218)
T ss_dssp             ----------------------
T ss_pred             ccchhhHHHHHHHHHHHHHhcC
Confidence                111234567889999985

>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A

Probab=100.00  E-value=3.2e-38  Score=249.36  Aligned_cols=139  Identities=27%  Similarity=0.478  Sum_probs=108.3

Q ss_pred             CHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Q psy16159          1 QELEIKKAAKEGDKIAATILAKQLIQIRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAMKNTADTMKNMNSIMKPEQI   80 (175)
Q Consensus         1 l~~~IKkaakkg~~~~arilAk~lvr~Rk~~~~l~~~ka~l~sv~~~l~~~~s~~~~~~~m~~~~~~M~~~n~~m~~~~l   80 (175)
                      ++.+||+|+++||+++|||||+++||.|+++.+||+++++|++|+++|+++.++..++++|++++++|+.+|++||+|+|
T Consensus        40 ~~~~Ikka~k~g~~~~aki~Ak~lvr~rk~~~~l~~~~a~l~~v~~~lqt~~~~~~v~~am~~~~~~M~~~n~~m~l~~i  119 (179)
T 2gd5_A           40 VKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEI  119 (179)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCCCSHHHHTTTSSTTSSSC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence            35789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHHhchhhhhhccCCCC
Q psy16159         81 AASAQEFQQGITRMNMTDEMIDEALDDMLEGSDDEQESNKIIDQVLGEIGIEISGKMANAPT  142 (175)
Q Consensus        81 ~~~M~ef~ke~~~~~i~~emm~d~~d~~~~~~~~eee~d~~v~qVl~E~gl~~~~~l~~~p~  142 (175)
                      +++|++|++||+++|+++|||+|+|+++++++++++|++++|+|||+|+|+   ++||.+|+
T Consensus       120 ~~~M~e~~~e~~~~~~~~E~m~d~~~~~~~~~~~eee~d~~v~kVl~E~~~---~~l~~~P~  178 (179)
T 2gd5_A          120 QATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRILFEITA---GALGKAPS  178 (179)
T ss_dssp             CHHHHHHHHHHHHHTSCC-------------------CTTHHHHTTCCC-------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCcHHHHHHHHHHHHHHhhH---hhcccCCC
Confidence            999999999999999999999999999988888999999999999999984   47777664

>3eab_G CHMP1B; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}

Probab=98.92  E-value=1.8e-11  Score=77.26  Aligned_cols=50  Identities=20%  Similarity=0.369  Sum_probs=29.7

Q ss_pred             HHHHHHHHHHHHhchhhhhhccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhhC
Q psy16159        117 ESNKIIDQVLGEIGIEISGKMANAPTVSGKVGEGSKSSSKTQVPSDAEIEAQLARLLG  174 (175)
Q Consensus       117 e~d~~v~qVl~E~gl~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~ddL~~RL~~Lr~  174 (175)
                      ++|++|+||+||+|++++.+|+.+|.+..  +.+..      ..++|+|.+||++||+
T Consensus         1 qVd~Lm~qVaDE~Glel~~~L~~~~~~~~--~~~~~------~~~eD~L~~RLaaLR~   50 (50)
T 3eab_G            1 QVDMLLQEMADEAGLDLNMELPQGQTGSV--GTSVA------SAEQDELSQRLARLRD   50 (50)
T ss_dssp             CCCHHHHHHHHHTTCC---------CHHH--HHHHH------HHHHHHHHHHHHTTC-
T ss_pred             CHHHHHHHHHHHhCchHHhhccccccccc--CCCCC------cccHHHHHHHHHHHhC
Confidence            36899999999999999999998876221  11111      2369999999999995

>3um3_B Charged multivesicular BODY protein 4B; alpha-helix of C-terminal tail of CHMP4B, ESCRT-III, CHMPS, protein-transport protein complex, BROX; 3.80A {Homo sapiens}

Probab=97.30  E-value=0.0012  Score=47.31  Aligned_cols=53  Identities=13%  Similarity=0.094  Sum_probs=38.4

Q ss_pred             cCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHH
Q psy16159         74 IMKPEQIAASAQEFQQGITRMNMTDEMIDEALDDMLEGSDDEQESNKIIDQVLGE  128 (175)
Q Consensus        74 ~m~~~~l~~~M~ef~ke~~~~~i~~emm~d~~d~~~~~~~~eee~d~~v~qVl~E  128 (175)
                      -|++.++.++|.++..+++..+=+++++...++.  ....+++|.+.++..+-.|
T Consensus         2 ~m~idkVe~lmDei~E~~e~~~EI~e~Ls~~~~~--~~~~DEdELe~ELe~Le~e   54 (104)
T 3um3_B            2 NMDIDKVDELMQDIADQQELAEEISTAISKPVGF--GEEFDEDELMAELEELEQE   54 (104)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC--CCCCCHHHHHHHHHHHHHH
Confidence            4899999999999999999999999999987642  1112344555555544443

>2v6x_B DOA4-independent degradation protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}

Probab=97.04  E-value=0.00025  Score=45.01  Aligned_cols=16  Identities=25%  Similarity=0.407  Sum_probs=13.7

Q ss_pred             CCHHHHHHHHHHhhCC
Q psy16159        160 PSDAEIEAQLARLLGS  175 (175)
Q Consensus       160 ~~~ddL~~RL~~Lr~~  175 (175)
                      .++|||++||++||+.
T Consensus        38 ~~ddDLQARLdsLRR~   53 (54)
T 2v6x_B           38 NPDDDLQARLNTLKKQ   53 (54)
T ss_dssp             -CCHHHHHHHHHHHCC
T ss_pred             CchHHHHHHHHHhccC
Confidence            3799999999999973

>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}

Probab=95.47  E-value=0.0022  Score=51.55  Aligned_cols=99  Identities=19%  Similarity=0.273  Sum_probs=57.3

Q ss_pred             HHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH--HHHHHHHHHh---hhhHHHHHH
Q psy16159         29 KQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAMKNTADTMKNMNSIMKPEQIAASA--QEFQQGITRM---NMTDEMIDE  103 (175)
Q Consensus        29 k~~~~l~~~ka~l~sv~~~l~~~~s~~~~~~~m~~~~~~M~~~n~~m~~~~l~~~M--~ef~ke~~~~---~i~~emm~d  103 (175)
                      ++..|.-+...+|.....+|++.....+...++..++.+|+.+...  ...+...|  +++++-|.++   -..-+++++
T Consensus        61 kelVR~Rk~~~rl~~~kaqL~sV~~rlqt~~s~~~v~~sM~~st~~--M~~~n~~m~l~~i~~tM~efekE~~k~~i~eE  138 (218)
T 3frt_A           61 KEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEV--MKAMQSLVKIPEIQATMRELSKEMMKAGIIEE  138 (218)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----CCCCCHHH--HHHHHHSTTSHHHHHHHHHHHHHHHHHSCC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHcCCHHHHHHHHHHHHHHHHHhhhHHH
Confidence            4445566667788888889999888888888888888888888888  44466666  6666666666   334456778


Q ss_pred             HhhhhcCCCCchHHHHHHHHHHHHHh
Q psy16159        104 ALDDMLEGSDDEQESNKIIDQVLGEI  129 (175)
Q Consensus       104 ~~d~~~~~~~~eee~d~~v~qVl~E~  129 (175)
                      .|++++++.++.++.+++++.+++.+
T Consensus       139 mm~Da~d~~~~~~~~eee~d~~v~kV  164 (218)
T 3frt_A          139 MLEDTFESMDDQEEMEEEAEMEIDRI  164 (218)
T ss_dssp             --------------CTTSTTTHHHHH
T ss_pred             HHHHHHhcccccCCchHHHHHHHHHH
Confidence            89999877655566677888888877

>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A

Probab=93.03  E-value=0.0087  Score=46.25  Aligned_cols=99  Identities=18%  Similarity=0.238  Sum_probs=52.6

Q ss_pred             HHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH--HHHHHHHHHhhhhHHH---HHH
Q psy16159         29 KQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAMKNTADTMKNMNSIMKPEQIAASA--QEFQQGITRMNMTDEM---IDE  103 (175)
Q Consensus        29 k~~~~l~~~ka~l~sv~~~l~~~~s~~~~~~~m~~~~~~M~~~n~~m~~~~l~~~M--~ef~ke~~~~~i~~em---m~d  103 (175)
                      ++..|.-+...+|.....+|++.....+...++..++.+|+.+++.  +..+.+.|  +++++-|..+.--.+.   +++
T Consensus        61 k~lvr~rk~~~~l~~~~a~l~~v~~~lqt~~~~~~v~~am~~~~~~--M~~~n~~m~l~~i~~~M~e~~~e~~~~~~~~E  138 (179)
T 2gd5_A           61 KEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEV--MKAMQSLVKIPEIQATMRELSKEMMKAGIIEE  138 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCCCSHH--HHTTTSSTTSSSCCHHHHHHHHHHHHHTSCC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344445556777788888888888777777777777777777776  44455555  5555555555444444   488


Q ss_pred             HhhhhcCCCCchHHHHHHHHHHHHHh
Q psy16159        104 ALDDMLEGSDDEQESNKIIDQVLGEI  129 (175)
Q Consensus       104 ~~d~~~~~~~~eee~d~~v~qVl~E~  129 (175)
                      .|++.+++..++++.+++++.+++.+
T Consensus       139 ~m~d~~~~~~~~~~~eee~d~~v~kV  164 (179)
T 2gd5_A          139 MLEDTFESMDDQEEMEEEAEMEIDRI  164 (179)
T ss_dssp             ------------------CTTHHHHT
T ss_pred             HHHHHHhhcccCCCcHHHHHHHHHHH
Confidence            89998877655566677777777766

>3ggz_E Vacuolar protein-sorting-associated protein 46; novel MIM binding mode, phosphoprotein, coiled coil, endosome, membrane; 3.80A {Saccharomyces cerevisiae}

Probab=91.18  E-value=0.2  Score=27.42  Aligned_cols=16  Identities=19%  Similarity=0.326  Sum_probs=13.9

Q ss_pred             CCCHHHHHHHHHHhhC
Q psy16159        159 VPSDAEIEAQLARLLG  174 (175)
Q Consensus       159 ~~~~ddL~~RL~~Lr~  174 (175)
                      ++.+|.|-.||++||+
T Consensus        14 eekEDkLAqRLRALR~   29 (29)
T 3ggz_E           14 DEKEDKLAQRLRALRG   29 (29)
T ss_pred             chhhHHHHHHHHHHcC
Confidence            4679999999999994

>2xze_Q Charged multivesicular BODY protein 3; hydrolase-protein transport complex; 1.75A {Homo sapiens}

Probab=84.91  E-value=0.21  Score=29.41  Aligned_cols=11  Identities=27%  Similarity=0.462  Sum_probs=9.2

Q ss_pred             HHHHHHHHhhC
Q psy16159        164 EIEAQLARLLG  174 (175)
Q Consensus       164 dL~~RL~~Lr~  174 (175)
                      +++.||++||+
T Consensus        30 ~MqsRLaALRS   40 (40)
T 2xze_Q           30 AMQSRLATLRS   40 (40)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHhcC
Confidence            37789999996

>2hh7_A Hypothetical protein CSOR; 4-helix bundle, unknown function; 2.55A {Mycobacterium tuberculosis}

Probab=83.82  E-value=5.1  Score=28.87  Aligned_cols=48  Identities=10%  Similarity=0.171  Sum_probs=39.1

Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16159         27 IRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAMKNTADTMKNMNSI   74 (175)
Q Consensus        27 ~Rk~~~~l~~~ka~l~sv~~~l~~~~s~~~~~~~m~~~~~~M~~~n~~   74 (175)
                      .++..+||-+...|+.+|..-+..=.-+..+...+..+..++..++..
T Consensus         9 kk~ll~RLkRIeGQvrGI~rMIEedr~C~DIL~QlaAVrsAL~~~~~~   56 (119)
T 2hh7_A            9 KRAALNRLKTVRGHLDGIVRMLESDAYCVDVMKQISAVQSSLERANRV   56 (119)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            456788999999999999998888888888888888777777766654

>3ggy_A Increased sodium tolerance protein 1; ESCRT-III like, phosphoprotein, protein transport, endocytosis; 1.70A {Saccharomyces cerevisiae} PDB: 3ggz_A

Probab=82.57  E-value=12  Score=29.12  Aligned_cols=128  Identities=7%  Similarity=0.053  Sum_probs=80.1

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHH--------HHHHHHHHH-HHHHHHHHHH
Q psy16159          2 ELEIKKAAKEGDKIAATILAKQLIQIRKQKTRTYAAQGKVHSIGIQNKTMGS--------NIKMAEAMK-NTADTMKNMN   72 (175)
Q Consensus         2 ~~~IKkaakkg~~~~arilAk~lvr~Rk~~~~l~~~ka~l~sv~~~l~~~~s--------~~~~~~~m~-~~~~~M~~~n   72 (175)
                      ..+|-+..+.|..+.|||=+.++||--+...=|--+---.+-+..|+.....        ....-..+. .++.++=..-
T Consensus        38 RrdIA~LL~~gk~~~AriRvE~iI~ed~~ie~~EilElyCelL~aR~~ll~~~~~e~~~~~k~cp~~l~EAvsslIyAa~  117 (193)
T 3ggy_A           38 RRQVAQLLLTNKEQKAHYRVETLIHDDIHIELLEILELYCELLLARVQVINDISTEEQLVKEHMDDGINEAIRSLIYAIL  117 (193)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTCCSHHHHHHHSSSSSHHHHHHHHHHHGG
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCHHHHHHHHHHHHhcc
Confidence            3577888999999999999999999998887776655555555555544443        112222222 3334555666


Q ss_pred             hcCCHHHHH----HHHHHHHHHHHHh------hhhHHHHHHHhhhhcCCCC-chHHHHHHHHHHHHHhchhhh
Q psy16159         73 SIMKPEQIA----ASAQEFQQGITRM------NMTDEMIDEALDDMLEGSD-DEQESNKIIDQVLGEIGIEIS  134 (175)
Q Consensus        73 ~~m~~~~l~----~~M~ef~ke~~~~------~i~~emm~d~~d~~~~~~~-~eee~d~~v~qVl~E~gl~~~  134 (175)
                      +..++|+|.    -.+..|.++|...      |+...++.-.     ...- +.+-++..+..|+.++|++.+
T Consensus       118 R~~elpEL~~ir~~l~~KyGkeF~~~a~en~~gVn~kiv~kL-----s~~~P~~elv~~yL~EIA~ey~V~w~  185 (193)
T 3ggy_A          118 FVDEVKELSQLKDLMAWKINVEFVNGVIADHIDVPEKIIKKC-----SPSVPKEELVDLYLKEIAKTYDVPYS  185 (193)
T ss_dssp             GCTTCTTHHHHHHHHHHHTCHHHHHHHHHHCTTCCHHHHHHH-----SCCCCCHHHHHHHHHHHHHHTTCCHH
T ss_pred             cCCCChHHHHHHHHHHHHhCHHHHHHHHhcCCCCCHHHHHHc-----CCCCcCHHHHHHHHHHHHHHcCCCCC
Confidence            667888886    3455677777553      3333333332     1112 256677778888888877654

>3frr_A Uncharacterized protein KIAA0174; ESCRT, ESCRT-III, CHMP, IST1, alternative splicing, phosphoprotein, protein binding; 1.80A {Homo sapiens} PDB: 3frs_A

Probab=82.45  E-value=10  Score=29.45  Aligned_cols=126  Identities=7%  Similarity=0.075  Sum_probs=77.6

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHhc-CCHHH
Q psy16159          2 ELEIKKAAKEGDKIAATILAKQLIQIRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAMK-NTADTMKNMNSI-MKPEQ   79 (175)
Q Consensus         2 ~~~IKkaakkg~~~~arilAk~lvr~Rk~~~~l~~~ka~l~sv~~~l~~~~s~~~~~~~m~-~~~~~M~~~n~~-m~~~~   79 (175)
                      ..+|-+..+.|..+.||+=++++||--+...=|--+---.+-+..|+.....+...-..+. .++.++=...+. -++|+
T Consensus        39 RrdIA~LL~~gk~~~AriRvE~iI~ed~~ie~~EilElyCelL~~R~~li~~~k~cp~~l~EAvsslIyAa~R~~~elpE  118 (191)
T 3frr_A           39 RKEIADYLAAGKDERARIRVEHIIREDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAE  118 (191)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHSCSSCCGGGHHHHHHHHHHHHHHTTTCHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhhcccccChH
Confidence            4578888999999999999999999999888776666666666666555544332222222 333456666665 78888


Q ss_pred             HHH----HHHHHHHHHHHh------h-hhHHHHHHHhhhhcCCCCc-hHHHHHHHHHHHHHhchh
Q psy16159         80 IAA----SAQEFQQGITRM------N-MTDEMIDEALDDMLEGSDD-EQESNKIIDQVLGEIGIE  132 (175)
Q Consensus        80 l~~----~M~ef~ke~~~~------~-i~~emm~d~~d~~~~~~~~-eee~d~~v~qVl~E~gl~  132 (175)
                      |..    ....|.++|...      | +...++. -+.    ..-| ++-++..+..|+.|+|++
T Consensus       119 L~~ir~~l~~KyGkeF~~~a~e~~~~~Vn~~iv~-kLs----~~~P~~~lv~~yL~EIA~~y~V~  178 (191)
T 3frr_A          119 LKIVADQLCAKYSKEYGKLCRTNQIGTVNDRLMH-KLS----VEAPPKILVERYLIEIAKNYNVP  178 (191)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHTTTTSCSCHHHHH-HTC----CSCCCHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHhCHHHHHHHHHcCCCCcCHHHHH-HcC----CCCcCHHHHHHHHHHHHHHcCCC
Confidence            864    455577777654      1 2222222 222    1122 445566666666666544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00