Psyllid ID: psy16164

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210----
Protein Sequence
MVLVKLSNIVHGKFRYHRFNKQPTLLNITLSGVVVHTVDSGSGAVAQLKSVFATCCMISGLILFIFQYIQPNVVHYRLLFQIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTEVVKELSQHCVGGLELQQKRVEIGALAEETNSLLKKNVFHNYMLFIETAKEISRILYIKQPRQPT
Secondary Structure (PSIPRED)
cEEEEEEcEEccEEEEEEEcccccEEEEEEccccccccccccccHHHHHHcccccccccHHHHHHHHHHcccccccccEEEEEcccccEEEHHHHHHHHHHHHHHHHHcccccccEEEEEccccccHHHHHHHHHHHccEEEccccccHHHHHHHHHHcccccEEHHHHHHHHHHHHHHHHHccccEEcccEEEEccHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
cEEEEEcccEcccEEEEEccccccEEEEEEccEEEEEcccccHHHHHHHHHHHHHcccHHHHHHHHHHcccccccccEEEEEEcccccEEcHHHHHHHHHHHHHHHHHcccccccEEEEEccccccHHHHHHHHHHHccEEEcccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
MVLVKLSnivhgkfryhrfnkqptllnitLSGVVVHTVDSGSGAVAQLKSVFATCCMISGLILFIFQYIQPNVVHYRLLFQIDAVTDITYTYDDILQKSLQLADALQkrgyrrgdivsicsenrldyPVLIVAASLLGITVSSINPQYTEVVKELSQHCVGGLELQQKRVEIGALAEETNSLLKKNVFHNYMLFIETAKEISRILYIKQPRQPT
Flexible Loop (DISEMBL)
mvlvklsnivhgkfryhrfnkqptLLNITLSGVVVHTVDSGSGAVAQLKSVFATCCMISGLILFIFQYIQPNVVHYRLLFQIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTEVVKELSQHCVGGLELQQKRVEIGALAEETNSLLKKNVFHNYMLFIETAKEISRILYikqprqpt
Low Complexity Region (SEG)
MVLVKLSNIVHGKFRYHRFNKQPTLLNITLSGVVVHTVDSGSGAVAQLKSVFATCCMISGLILFIFQYIQPNVVHYRLLFQIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTEVVKELSQHCVGGLELQQKRVEIGALAEETNSLLKKNVFHNYMLFIETAKEISRILYIKQPRQPT
Disordered region (IsUnstruct)
**LVKLSNIVHGKFRYHRFNKQPTLLNITLSGVVVHTVDSGSGAVAQLKSVFATCCMISGLILFIFQYIQPNVVHYRLLFQIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTEVVKELSQHCVGGLELQQKRVEIGALAEETNSLLKKNVFHNYMLFIETAKEISRILYI*******
Disordered Region (DISOPRED)
*VLVKLSNIVHGKFRYHRFNKQPTLLNITLSGVVVHTVDSGSGAVAQLKSVFATCCMISGLILFIFQYIQPNVVHYRLLFQIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTEVVKELSQHCVGGLELQQKRVEIGALAEETNSLLKKNVFHNYMLFIETAKEISRI***K******
Disordered Region (DISEMBL)
MVLVKLSNIVHGKFRYHRFNKQPTLLNITLSGVVVHTVDSGSGAVAQLKSVFATCCMISGLILFIFQYIQPNVVHYRLLFQIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTEVVKELSQHCVGGLELQQKRVEIGALAEETNSLLKKNVFHNYMLFIETAKEISRILYIKQPRQPT
Disordered Region (DISPRO)
MVLVKLSNIVHGKFRYHRFNKQPTLLNITLSGVVVHTVDSGSGAVAQLKSVFATCCMISGLILFIFQYIQPNVVHYRLLFQIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTEVVKELSQHCVGGLELQQKRVEIGALAEETNSLLKKNVFHNYMLFIETAKEISRILYIKQPR***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVLVKLSNIVHGKFRYHRFNKQPTLLNITLSGVVVHTVDSGSGAVAQLKSVFATCCMISGLILFIFQYIQPNVVHYRLLFQIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTEVVKELSQHCVGGLELQQKRVEIGALAEETNSLLKKNVFHNYMLFIETAKEISRILYIKQPRQPT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	214	2.2.26 [Sep-21-2011]
A4IF89	725	Exocyst complex component	yes	N/A	0.238	0.070	0.588	3e-08
O54924	716	Exocyst complex component	yes	N/A	0.238	0.071	0.568	3e-08
Q5ZJ43	708	Exocyst complex component	yes	N/A	0.252	0.076	0.555	3e-08
Q8IYI6	725	Exocyst complex component	yes	N/A	0.238	0.070	0.588	4e-08
Q6PGF7	716	Exocyst complex component	yes	N/A	0.238	0.071	0.568	4e-08
Q5U247	685	Exocyst complex component	N/A	N/A	0.261	0.081	0.535	2e-07
O30409	6486	Tyrocidine synthase 3 OS=	N/A	N/A	0.219	0.007	0.387	5e-05
Q27757	545	Luciferin 4-monooxygenase	N/A	N/A	0.275	0.108	0.322	9e-05
P13129	548	Luciferin 4-monooxygenase	N/A	N/A	0.313	0.122	0.343	0.0002
Q01158	548	Luciferin 4-monooxygenase	N/A	N/A	0.313	0.122	0.328	0.0006

>sp|A4IF89|EXOC8_BOVIN Exocyst complex component 8 OS=Bos taurus GN=EXOC8 PE=2 SV=1

 Score = 58.5 bits (140), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 30/51 (58%), Positives = 36/51 (70%)

Query: 152 VKELSQHCVGGLELQQKRVEIGALAEETNSLLKKNVFHNYMLFIETAKEIS 202
           VK+LSQ   G  +LQ+ R  I ALAEET   LK+NV+ NY  FIETA+EIS
Sbjct: 28  VKQLSQQSDGDRDLQEHRQRIQALAEETAQNLKRNVYQNYRQFIETAREIS 78

Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.
Bos taurus (taxid: 9913)

>sp|O54924|EXOC8_RAT Exocyst complex component 8 OS=Rattus norvegicus GN=Exoc8 PE=1 SV=1

 Score = 58.5 bits (140), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/51 (56%), Positives = 36/51 (70%)

Query: 152 VKELSQHCVGGLELQQKRVEIGALAEETNSLLKKNVFHNYMLFIETAKEIS 202
           VK+LSQ   G  +LQ+ R  + ALAEET   LK+NV+ NY  FIETA+EIS
Sbjct: 24  VKQLSQQSDGDRDLQEHRQRVQALAEETAQNLKRNVYQNYRQFIETAREIS 74

Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.

Rattus norvegicus (taxid: 10116)

>sp|Q5ZJ43|EXOC8_CHICK Exocyst complex component 8 OS=Gallus gallus GN=EXOC8 PE=2 SV=1

 Score = 58.5 bits (140), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 30/54 (55%), Positives = 36/54 (66%)

Query: 149 TEVVKELSQHCVGGLELQQKRVEIGALAEETNSLLKKNVFHNYMLFIETAKEIS 202
            E VK+LSQ   G  +LQ+ R  I AL EET   LK+NV+ NY  FIETA+EIS
Sbjct: 26  AEYVKQLSQQSDGDRDLQEHRQRIQALQEETAQSLKRNVYQNYRQFIETAREIS 79

Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.

Gallus gallus (taxid: 9031)

>sp|Q8IYI6|EXOC8_HUMAN Exocyst complex component 8 OS=Homo sapiens GN=EXOC8 PE=1 SV=2

 Score = 58.5 bits (140), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 30/51 (58%), Positives = 36/51 (70%)

Query: 152 VKELSQHCVGGLELQQKRVEIGALAEETNSLLKKNVFHNYMLFIETAKEIS 202
           VK+LSQ   G  +LQ+ R  I ALAEET   LK+NV+ NY  FIETA+EIS
Sbjct: 28  VKQLSQQSDGDRDLQEHRQRIQALAEETAQNLKRNVYQNYRQFIETAREIS 78

Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.

Homo sapiens (taxid: 9606)

>sp|Q6PGF7|EXOC8_MOUSE Exocyst complex component 8 OS=Mus musculus GN=Exoc8 PE=1 SV=1

 Score = 58.5 bits (140), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 29/51 (56%), Positives = 36/51 (70%)

Query: 152 VKELSQHCVGGLELQQKRVEIGALAEETNSLLKKNVFHNYMLFIETAKEIS 202
           VK+LSQ   G  +LQ+ R  + ALAEET   LK+NV+ NY  FIETA+EIS
Sbjct: 24  VKQLSQQSDGDRDLQEHRQRVQALAEETAQNLKRNVYQNYRQFIETAREIS 74

Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.

Mus musculus (taxid: 10090)

>sp|Q5U247|EXOC8_XENLA Exocyst complex component 8 OS=Xenopus laevis GN=exoc8 PE=2 SV=1

 Score = 55.5 bits (132), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/56 (53%), Positives = 37/56 (66%)

Query: 147 QYTEVVKELSQHCVGGLELQQKRVEIGALAEETNSLLKKNVFHNYMLFIETAKEIS 202
           Q  + VK LSQ   G  +LQ+ R  I +LA+ET   LK+NV+ NY  FIETAKEIS
Sbjct: 21  QAEQYVKLLSQQSDGDRDLQEHRQRIQSLADETAQSLKRNVYQNYRQFIETAKEIS 76

Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.

Xenopus laevis (taxid: 8355)

>sp|O30409|TYCC_BREPA Tyrocidine synthase 3 OS=Brevibacillus parabrevis GN=tycC PE=1 SV=1

 Score = 47.8 bits (112), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 40/62 (64%)

Query: 89  TYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQY 148
           T TY +++++S QLA+AL+++G   G IVSI +E+ L+  V I+A    G     I+P+Y
Sbjct: 489 TLTYQELMERSAQLANALREKGIASGSIVSIMAEHSLELIVAIMAVLRSGAAYLPIDPEY 548

Query: 149 TE 150
            +
Sbjct: 549 PQ 550

Incorporates six amino acids (for tyrocidine A, Asn, Gln, Tyr, Val, Orn, and Leu) in their L-configuration into the peptide product.

Brevibacillus parabrevis (taxid: 54914)

>sp|Q27757|LUCI_PHOPE Luciferin 4-monooxygenase OS=Photuris pennsylvanica PE=2 SV=2

 Score = 47.0 bits (110), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 40/59 (67%)

Query: 92  YDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTE 150
           Y++ L+ S +LA++ +K G ++ D +++CSEN L + + ++A+  LGI  + ++ +Y E
Sbjct: 52  YEEFLKLSCRLAESFKKYGLKQNDTIAVCSENGLQFFLPLIASLYLGIIAAPVSDKYIE 110

Produces green light with a wavelength of 562 nm.

Photuris pennsylvanica (taxid: 41716)

EC: 1

EC: .

EC: 1

EC: 3

EC: .

EC: 1

EC: 2

EC: .

EC: 7

>sp|P13129|LUCI_LUCCR Luciferin 4-monooxygenase OS=Luciola cruciata PE=1 SV=1

 Score = 45.8 bits (107), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 39/67 (58%)

Query: 83  DAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVS 142
           +AVT + Y+Y + L+KS  L  ALQ  G      +++CSEN  ++ + ++A   +G+ V+
Sbjct: 46  NAVTGVDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVA 105

Query: 143 SINPQYT 149
             N  YT
Sbjct: 106 PTNEIYT 112

Produces green light with a wavelength of 544 nm.

Luciola cruciata (taxid: 7051)

EC: 1

EC: .

EC: 1

EC: 3

EC: .

EC: 1

EC: 2

EC: .

EC: 7

>sp|Q01158|LUCI_LUCLA Luciferin 4-monooxygenase OS=Luciola lateralis PE=2 SV=1

 Score = 44.3 bits (103), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 40/67 (59%)

Query: 83  DAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVS 142
           +A+T + YTY + L+KS  L +AL+  G      +++CSEN  ++ + ++A   +G+ V+
Sbjct: 46  NALTGVDYTYAEYLEKSCCLGEALKNYGLVVDGRIALCSENCEEFFIPVLAGLFIGVGVA 105

Query: 143 SINPQYT 149
             N  YT
Sbjct: 106 PTNEIYT 112

Produces green light.

Luciola lateralis (taxid: 7052)

EC: 1

EC: .

EC: 1

EC: 3

EC: .

EC: 1

EC: 2

EC: .

EC: 7

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	214
66509103	537	PREDICTED: luciferin 4-monooxygenase-lik	0.327	0.130	0.5	2e-10
380025349	537	PREDICTED: luciferin 4-monooxygenase-lik	0.327	0.130	0.485	3e-10
242008107	688	exocyst complex component, putative [Ped	0.247	0.077	0.641	3e-10
340727044	723	PREDICTED: exocyst complex component 8-l	0.331	0.098	0.513	4e-10
347969967	540	AGAP003483-PA [Anopheles gambiae str. PE	0.317	0.125	0.470	4e-10
307196747	710	Exocyst complex component 8 [Harpegnatho	0.294	0.088	0.538	6e-10
383851215	709	PREDICTED: exocyst complex component 8-l	0.294	0.088	0.538	6e-10
357631628	683	putative exocyst complex 84-kDa subunit	0.247	0.077	0.641	1e-09
321470969	714	hypothetical protein DAPPUDRAFT_195921 [	0.238	0.071	0.686	1e-09
350403362	723	PREDICTED: exocyst complex component 8-l	0.331	0.098	0.5	1e-09

>gi|66509103|ref|XP_394579.2| PREDICTED: luciferin 4-monooxygenase-like [Apis mellifera]

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/70 (50%), Positives = 49/70 (70%)

Query: 81  QIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGIT 140
           QIDA T  T T+ +IL+ S +LA AL K G R+ D ++ICSEN L++ +++ AA  LG+T
Sbjct: 39  QIDAYTGKTQTFKEILEISQKLAIALSKEGLRKDDRIAICSENNLEFCLIVCAAFYLGVT 98

Query: 141 VSSINPQYTE 150
           V  +NP YTE
Sbjct: 99  VCPLNPLYTE 108

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380025349|ref|XP_003696437.1| PREDICTED: luciferin 4-monooxygenase-like [Apis florea]

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 34/70 (48%), Positives = 49/70 (70%)

Query: 81  QIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGIT 140
           QIDA T  T T+ ++L+ S +LA AL K G R+ D ++ICSEN L++ +++ AA  LG+T
Sbjct: 39  QIDAYTGKTQTFKEVLEISQKLAIALNKEGLRKDDRIAICSENNLEFCLIVCAAFYLGVT 98

Query: 141 VSSINPQYTE 150
           V  +NP YTE
Sbjct: 99  VCPLNPLYTE 108

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242008107|ref|XP_002424854.1| exocyst complex component, putative [Pediculus humanus corporis] gi|212508404|gb|EEB12116.1| exocyst complex component, putative [Pediculus humanus corporis]

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 34/53 (64%), Positives = 44/53 (83%)

Query: 152 VKELSQHCVGGLELQQKRVEIGALAEETNSLLKKNVFHNYMLFIETAKEISRI 204
           V+ELSQ CVGG ELQQ+R  I A++E T+ LLKKNV+ NY+ FIETAKEI+++
Sbjct: 11  VRELSQKCVGGQELQQQRKAIQAISESTSVLLKKNVYKNYIQFIETAKEITQL 63

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340727044|ref|XP_003401861.1| PREDICTED: exocyst complex component 8-like [Bombus terrestris]

 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 38/74 (51%), Positives = 51/74 (68%), Gaps = 3/74 (4%)

Query: 132 VAASLLGI-TVSSINPQYTEVVKELSQHCVGGLELQQKRVEIGALAEETNSLLKKNVFHN 190
           +A SL  + T+   NP+  + VKELS  CVG  EL+Q+R +I  LA  T++ LK+NV+ N
Sbjct: 15  MANSLAKVFTIEDFNPE--KFVKELSAQCVGADELRQQRAKIQDLANNTSAQLKRNVYQN 72

Query: 191 YMLFIETAKEISRI 204
           YM FIETAKEIS +
Sbjct: 73  YMQFIETAKEISHL 86

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347969967|ref|XP_001688203.2| AGAP003483-PA [Anopheles gambiae str. PEST] gi|333466677|gb|EDO64449.2| AGAP003483-PA [Anopheles gambiae str. PEST]

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 32/68 (47%), Positives = 46/68 (67%)

Query: 82  IDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITV 141
           +D VT   Y+Y ++LQ +LQLA  L     +RGD+V+I +ENR +YPV ++A  L+G TV
Sbjct: 47  VDGVTGREYSYQEVLQSALQLAAYLHDHNIQRGDVVAIVAENRYEYPVTVIALFLVGATV 106

Query: 142 SSINPQYT 149
           +  NP YT
Sbjct: 107 ALFNPSYT 114

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307196747|gb|EFN78206.1| Exocyst complex component 8 [Harpegnathos saltator]

 Score = 70.1 bits (170), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 35/65 (53%), Positives = 45/65 (69%), Gaps = 2/65 (3%)

Query: 140 TVSSINPQYTEVVKELSQHCVGGLELQQKRVEIGALAEETNSLLKKNVFHNYMLFIETAK 199
           T    NP+  + VKELS  CVG  EL+Q+R +I  LA  T++ LK+NV+ NYM FIETAK
Sbjct: 10  TAEDFNPE--KFVKELSAQCVGADELRQQRAKIQELANNTSAQLKRNVYQNYMQFIETAK 67

Query: 200 EISRI 204
           EIS +
Sbjct: 68  EISHL 72

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383851215|ref|XP_003701134.1| PREDICTED: exocyst complex component 8-like [Megachile rotundata]

 Score = 70.1 bits (170), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 35/65 (53%), Positives = 45/65 (69%), Gaps = 2/65 (3%)

Query: 140 TVSSINPQYTEVVKELSQHCVGGLELQQKRVEIGALAEETNSLLKKNVFHNYMLFIETAK 199
           T    NP+  + VKELS  CVG  EL+Q+R +I  LA  T++ LK+NV+ NYM FIETAK
Sbjct: 10  TTEDFNPE--KFVKELSAQCVGADELRQQRAKIQELANNTSAQLKRNVYQNYMQFIETAK 67

Query: 200 EISRI 204
           EIS +
Sbjct: 68  EISHL 72

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357631628|gb|EHJ79097.1| putative exocyst complex 84-kDa subunit [Danaus plexippus]

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/53 (64%), Positives = 41/53 (77%)

Query: 152 VKELSQHCVGGLELQQKRVEIGALAEETNSLLKKNVFHNYMLFIETAKEISRI 204
           VKEL++ CVGG EL Q++ +I  LAEET S LKKNV+ NYM FIETA EIS +
Sbjct: 20  VKELTKSCVGGEELAQQKEKIKNLAEETASALKKNVYENYMQFIETATEISHL 72

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321470969|gb|EFX81943.1| hypothetical protein DAPPUDRAFT_195921 [Daphnia pulex]

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/51 (68%), Positives = 40/51 (78%)

Query: 152 VKELSQHCVGGLELQQKRVEIGALAEETNSLLKKNVFHNYMLFIETAKEIS 202
           VKEL+Q  VGG +L Q R +I AL+EETN  LKKNV+ NYM FIETAKEIS
Sbjct: 20  VKELTQSTVGGHDLLQHRQKIQALSEETNQYLKKNVYQNYMQFIETAKEIS 70

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350403362|ref|XP_003486779.1| PREDICTED: exocyst complex component 8-like [Bombus impatiens]

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/74 (50%), Positives = 50/74 (67%), Gaps = 3/74 (4%)

Query: 132 VAASLLGI-TVSSINPQYTEVVKELSQHCVGGLELQQKRVEIGALAEETNSLLKKNVFHN 190
           +A SL  +  +   NP+  + VKELS  CVG  EL+Q+R +I  LA  T++ LK+NV+ N
Sbjct: 15  MANSLAKVFAIEDFNPE--KFVKELSAQCVGADELRQQRAKIQDLANNTSAQLKRNVYQN 72

Query: 191 YMLFIETAKEISRI 204
           YM FIETAKEIS +
Sbjct: 73  YMQFIETAKEISHL 86

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	214
ZFIN|ZDB-GENE-070410-60	684	exoc8 "exocyst complex compone	0.271	0.084	0.533	1.2e-06
UNIPROTKB|Q5ZJ43	708	EXOC8 "Exocyst complex compone	0.247	0.074	0.566	1.8e-06
UNIPROTKB|F1NE80	709	EXOC8 "Exocyst complex compone	0.247	0.074	0.566	1.8e-06
UNIPROTKB|A4IF89	725	EXOC8 "Exocyst complex compone	0.238	0.070	0.588	1.8e-06
UNIPROTKB|Q8IYI6	725	EXOC8 "Exocyst complex compone	0.238	0.070	0.588	1.8e-06
UNIPROTKB|E2R5F1	727	EXOC8 "Uncharacterized protein	0.238	0.070	0.588	1.8e-06
FB|FBgn0260946	672	exo84 [Drosophila melanogaster	0.247	0.078	0.547	2.2e-06
MGI|MGI:2142527	716	Exoc8 "exocyst complex compone	0.238	0.071	0.568	2.4e-06
RGD|620245	716	Exoc8 "exocyst complex compone	0.238	0.071	0.568	2.4e-06
ASPGD|ASPL0000006875	562	AN5990 [Emericella nidulans (t	0.420	0.160	0.297	0.00015

ZFIN|ZDB-GENE-070410-60 exoc8 "exocyst complex component 8" [Danio rerio (taxid:7955)]

 Score = 136 (52.9 bits), Expect = 1.2e-06, P = 1.2e-06
 Identities = 32/60 (53%), Positives = 40/60 (66%)

Query:   143 SINPQYTEVVKELSQHCVGGLELQQKRVEIGALAEETNSLLKKNVFHNYMLFIETAKEIS 202
             + +PQ    VK+LSQ   G  +LQ+ R +I  LA+ET   LKKNV+ NY  FIETAKEIS
Sbjct:    16 NFDPQ--SYVKQLSQQSDGDRDLQEHRQKIQTLADETAQNLKKNVYKNYRQFIETAKEIS 73

GO:0005543 "phospholipid binding" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q5ZJ43 EXOC8 "Exocyst complex component 8" [Gallus gallus (taxid:9031)]

 Score = 135 (52.6 bits), Expect = 1.8e-06, P = 1.8e-06
 Identities = 30/53 (56%), Positives = 36/53 (67%)

Query:   150 EVVKELSQHCVGGLELQQKRVEIGALAEETNSLLKKNVFHNYMLFIETAKEIS 202
             E VK+LSQ   G  +LQ+ R  I AL EET   LK+NV+ NY  FIETA+EIS
Sbjct:    27 EYVKQLSQQSDGDRDLQEHRQRIQALQEETAQSLKRNVYQNYRQFIETAREIS 79

GO:0005543 "phospholipid binding" evidence=IEA

GO:0006887 "exocytosis" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|F1NE80 EXOC8 "Exocyst complex component 8" [Gallus gallus (taxid:9031)]

 Score = 135 (52.6 bits), Expect = 1.8e-06, P = 1.8e-06
 Identities = 30/53 (56%), Positives = 36/53 (67%)

Query:   150 EVVKELSQHCVGGLELQQKRVEIGALAEETNSLLKKNVFHNYMLFIETAKEIS 202
             E VK+LSQ   G  +LQ+ R  I AL EET   LK+NV+ NY  FIETA+EIS
Sbjct:    27 EYVKQLSQQSDGDRDLQEHRQRIQALQEETAQSLKRNVYQNYRQFIETAREIS 79

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|A4IF89 EXOC8 "Exocyst complex component 8" [Bos taurus (taxid:9913)]

 Score = 135 (52.6 bits), Expect = 1.8e-06, P = 1.8e-06
 Identities = 30/51 (58%), Positives = 36/51 (70%)

Query:   152 VKELSQHCVGGLELQQKRVEIGALAEETNSLLKKNVFHNYMLFIETAKEIS 202
             VK+LSQ   G  +LQ+ R  I ALAEET   LK+NV+ NY  FIETA+EIS
Sbjct:    28 VKQLSQQSDGDRDLQEHRQRIQALAEETAQNLKRNVYQNYRQFIETAREIS 78

GO:0030426 "growth cone" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0006887 "exocytosis" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

UNIPROTKB|Q8IYI6 EXOC8 "Exocyst complex component 8" [Homo sapiens (taxid:9606)]

 Score = 135 (52.6 bits), Expect = 1.8e-06, P = 1.8e-06
 Identities = 30/51 (58%), Positives = 36/51 (70%)

Query:   152 VKELSQHCVGGLELQQKRVEIGALAEETNSLLKKNVFHNYMLFIETAKEIS 202
             VK+LSQ   G  +LQ+ R  I ALAEET   LK+NV+ NY  FIETA+EIS
Sbjct:    28 VKQLSQQSDGDRDLQEHRQRIQALAEETAQNLKRNVYQNYRQFIETAREIS 78

GO:0005543 "phospholipid binding" evidence=IEA

GO:0006887 "exocytosis" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0000145 "exocyst" evidence=IEA

GO:0034613 "cellular protein localization" evidence=IEA

GO:0030426 "growth cone" evidence=IEA

GO:0005886 "plasma membrane" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|E2R5F1 EXOC8 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 135 (52.6 bits), Expect = 1.8e-06, P = 1.8e-06
 Identities = 30/51 (58%), Positives = 36/51 (70%)

Query:   152 VKELSQHCVGGLELQQKRVEIGALAEETNSLLKKNVFHNYMLFIETAKEIS 202
             VK+LSQ   G  +LQ+ R  I ALAEET   LK+NV+ NY  FIETA+EIS
Sbjct:    28 VKQLSQQSDGDRDLQEHRQRIQALAEETAQNLKRNVYQNYRQFIETAREIS 78

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

FB|FBgn0260946 exo84 [Drosophila melanogaster (taxid:7227)]

 Score = 134 (52.2 bits), Expect = 2.2e-06, P = 2.2e-06
 Identities = 29/53 (54%), Positives = 38/53 (71%)

Query:   153 KELSQHCVGGLELQQKRVEIGALAEETNSLLKKNVFHNYMLFIETAKEISRIL 205
             K+L++ CVGG +LQQ++ EI A  E T + LK+    NYM FI+TAKEISR L
Sbjct:    16 KDLTRECVGGSDLQQRKKEIEAYNETTAATLKQTCKKNYMEFIQTAKEISRNL 68

GO:0000145 "exocyst" evidence=ISS;NAS

GO:0016080 "synaptic vesicle targeting" evidence=NAS

GO:0007269 "neurotransmitter secretion" evidence=NAS

GO:0016081 "synaptic vesicle docking involved in exocytosis" evidence=NAS

GO:0016192 "vesicle-mediated transport" evidence=ISS

GO:0000910 "cytokinesis" evidence=IMP

GO:0046907 "intracellular transport" evidence=NAS

GO:0005543 "phospholipid binding" evidence=IEA

GO:0007110 "cytokinesis after meiosis I" evidence=IMP

GO:0043147 "meiotic spindle stabilization" evidence=IMP

GO:0007111 "cytokinesis after meiosis II" evidence=IMP

GO:0000916 "actomyosin contractile ring contraction" evidence=IMP

GO:0045199 "maintenance of epithelial cell apical/basal polarity" evidence=IMP

GO:0048812 "neuron projection morphogenesis" evidence=IMP

GO:0007163 "establishment or maintenance of cell polarity" evidence=IMP

GO:0007286 "spermatid development" evidence=IMP

MGI|MGI:2142527 Exoc8 "exocyst complex component 8" [Mus musculus (taxid:10090)]

 Score = 134 (52.2 bits), Expect = 2.4e-06, P = 2.4e-06
 Identities = 29/51 (56%), Positives = 36/51 (70%)

Query:   152 VKELSQHCVGGLELQQKRVEIGALAEETNSLLKKNVFHNYMLFIETAKEIS 202
             VK+LSQ   G  +LQ+ R  + ALAEET   LK+NV+ NY  FIETA+EIS
Sbjct:    24 VKQLSQQSDGDRDLQEHRQRVQALAEETAQNLKRNVYQNYRQFIETAREIS 74

GO:0000145 "exocyst" evidence=ISO

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006887 "exocytosis" evidence=ISO

GO:0015031 "protein transport" evidence=IEA

GO:0017160 "Ral GTPase binding" evidence=ISO

GO:0034613 "cellular protein localization" evidence=ISO

GO:0035091 "phosphatidylinositol binding" evidence=ISO

GO:0042995 "cell projection" evidence=IEA

RGD|620245 Exoc8 "exocyst complex component 8" [Rattus norvegicus (taxid:10116)]

 Score = 134 (52.2 bits), Expect = 2.4e-06, P = 2.4e-06
 Identities = 29/51 (56%), Positives = 36/51 (70%)

Query:   152 VKELSQHCVGGLELQQKRVEIGALAEETNSLLKKNVFHNYMLFIETAKEIS 202
             VK+LSQ   G  +LQ+ R  + ALAEET   LK+NV+ NY  FIETA+EIS
Sbjct:    24 VKQLSQQSDGDRDLQEHRQRVQALAEETAQNLKRNVYQNYRQFIETAREIS 74

GO:0000145 "exocyst" evidence=IDA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0006887 "exocytosis" evidence=TAS

GO:0015031 "protein transport" evidence=IEA

GO:0030426 "growth cone" evidence=IEA

GO:0034613 "cellular protein localization" evidence=IMP

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

ASPGD|ASPL0000006875 AN5990 [Emericella nidulans (taxid:162425)]

 Score = 118 (46.6 bits), Expect = 0.00015, P = 0.00015
 Identities = 28/94 (29%), Positives = 53/94 (56%)

Query:    64 FIFQYIQPNVVHYRLLFQIDAVTDITYTYDDILQKSLQLADALQKR-GYRRGDIVSICSE 122
             F+F+         ++++  DA T  +YTY+D+ Q ++     L+    +R+GD++++ + 
Sbjct:    20 FLFERKDRQFPDNKVIYT-DADTRRSYTYNDVKQSAITFGQGLKSLFDWRKGDVLALFTP 78

Query:   123 NRLDYPVLIVAASLLGITVSSINPQYTEVVKELS 156
             N +D P+++  A   G  VS  NP YT  V+EL+
Sbjct:    79 NSIDTPIVMYGALWAGGVVSPSNPAYT--VEELA 110

GO:0006631 "fatty acid metabolic process" evidence=RCA

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=RCA

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	214
cd05911	487	cd05911, Firefly_Luc_like, Firefly luciferase of l	3e-16
cd05904	504	cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)	2e-12
pfam00501	412	pfam00501, AMP-binding, AMP-binding enzyme	4e-12
COG0318	534	COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/	7e-12
cd05936	468	cd05936, FC-FACS_FadD_like, Prokaryotic long-chain	4e-11
cd05940	444	cd05940, FATP_FACS, Fatty acid transport proteins	4e-10
cd05934	421	cd05934, FACL_DitJ_like, Uncharacterized subfamily	3e-08
cd05912	407	cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase	1e-07
cd05941	430	cd05941, MCS, Malonyl-CoA synthetase (MCS)	1e-07
PRK07059	557	PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig	1e-07
PRK08279	600	PRK08279, PRK08279, long-chain-acyl-CoA synthetase	3e-07
cd05903	437	cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li	3e-07
COG0365	528	COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat	1e-06
PLN02246	537	PLN02246, PLN02246, 4-coumarate--CoA ligase	1e-06
cd05939	474	cd05939, hsFATP4_like, Fatty acid transport protei	2e-06
PRK13391	511	PRK13391, PRK13391, acyl-CoA synthetase; Provision	4e-06
PRK06164	540	PRK06164, PRK06164, acyl-CoA synthetase; Validated	7e-06
cd12117	474	cd12117, A_NRPS_Srf_like, The adenylation domain o	1e-05
cd05907	456	cd05907, VL_LC_FACS_like, Long-chain fatty acid Co	2e-05
cd05921	559	cd05921, FCS, Feruloyl-CoA synthetase (FCS)	3e-05
PRK08276	502	PRK08276, PRK08276, long-chain-fatty-acid--CoA lig	5e-05
PRK07656	513	PRK07656, PRK07656, long-chain-fatty-acid--CoA lig	5e-05
PRK08180	614	PRK08180, PRK08180, feruloyl-CoA synthase; Reviewe	6e-05
cd05919	436	cd05919, BCL_like, Benzoate CoA ligase (BCL) and s	8e-05
TIGR01923	436	TIGR01923, menE, O-succinylbenzoate-CoA ligase	8e-05
COG1022	613	COG1022, FAA1, Long-chain acyl-CoA synthetases (AM	1e-04
PLN02330	546	PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1	2e-04
cd05935	430	cd05935, LC_FACS_like, Putative long-chain fatty a	4e-04
cd05930	445	cd05930, A_NRPS, The adenylation domain of nonribo	5e-04
PRK12583	558	PRK12583, PRK12583, acyl-CoA synthetase; Provision	5e-04
cd12118	520	cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt	6e-04
PRK05852	534	PRK05852, PRK05852, acyl-CoA synthetase; Validated	7e-04
PRK07798	533	PRK07798, PRK07798, acyl-CoA synthetase; Validated	8e-04
COG1020	642	COG1020, EntF, Non-ribosomal peptide synthetase mo	0.002
TIGR03443	1389	TIGR03443, alpha_am_amid, L-aminoadipate-semialdeh	0.002
cd05945	447	cd05945, DltA, D-alanine:D-alanyl carrier protein	0.002
PLN02574	560	PLN02574, PLN02574, 4-coumarate--CoA ligase-like	0.003
cd12115	449	cd12115, A_NRPS_Sfm_like, The adenylation domain o	0.003
pfam08700	87	pfam08700, Vps51, Vps51/Vps67	0.003
PRK06188	524	PRK06188, PRK06188, acyl-CoA synthetase; Validated	0.003
cd05972	430	cd05972, MACS_like, Medium-chain acyl-CoA syntheta	0.003
PRK03640	483	PRK03640, PRK03640, O-succinylbenzoic acid--CoA li	0.004

>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL)

 Score = 76.1 bits (188), Expect = 3e-16
 Identities = 27/70 (38%), Positives = 44/70 (62%)

Query: 81  QIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGIT 140
            IDA T    T+ D+L+K+L+LA  L+K G ++GD+V++ S N +++P + +     G  
Sbjct: 2   LIDADTGTELTFADLLKKALRLAKGLRKLGLKQGDVVALISPNSIEFPPVFLGCLAAGGI 61

Query: 141 VSSINPQYTE 150
           VS+ NP YT 
Sbjct: 62  VSAANPSYTP 71

This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487

>gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)

 Score = 65.4 bits (160), Expect = 2e-12
 Identities = 29/77 (37%), Positives = 45/77 (58%), Gaps = 2/77 (2%)

Query: 82  IDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITV 141
           IDA T    TY ++ +   +LA  L  RG R+GD+V + S N L++PV+ +A    G  V
Sbjct: 25  IDAATGRALTYAELERLVRRLAAGLAARGGRKGDVVLLLSPNSLEFPVVFLAVLSAGAVV 84

Query: 142 SSINPQYT--EVVKELS 156
           ++ NP YT  E+ K++ 
Sbjct: 85  TTANPLYTPAEIAKQVK 101

4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504

>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme

 Score = 63.9 bits (156), Expect = 4e-12
 Identities = 17/60 (28%), Positives = 30/60 (50%)

Query: 91  TYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTE 150
           TY ++ +++ +LA AL+  G   GD V+I   N  ++ V I+A    G     ++P    
Sbjct: 1   TYRELDERANRLAAALRALGVGPGDRVAILLPNSPEWVVAILAVLKAGAAYVPLDPSLPA 60

Length = 412

>gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 63.2 bits (154), Expect = 7e-12
 Identities = 20/69 (28%), Positives = 34/69 (49%)

Query: 82  IDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITV 141
           I        TY ++ +++ +LA ALQ  G + GD V+I   N  ++ +  +AA   G   
Sbjct: 31  IFLGRGGRLTYRELDRRANRLAAALQALGVKPGDRVAILLPNSPEFLIAFLAALRAGAVA 90

Query: 142 SSINPQYTE 150
             +NP+ T 
Sbjct: 91  VPLNPRLTP 99

Length = 534

>gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD

 Score = 61.4 bits (150), Expect = 4e-11
 Identities = 18/64 (28%), Positives = 30/64 (46%)

Query: 87  DITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINP 146
               TY ++ + S + A  LQ+ G ++GD V++   N   +P+        G  V  +NP
Sbjct: 22  GRKLTYAELDELSDRFAAYLQQLGVKKGDRVALMLPNCPQFPIAYFGILKAGAVVVPVNP 81

Query: 147 QYTE 150
            YT 
Sbjct: 82  LYTP 85

This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468

>gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes

 Score = 58.0 bits (141), Expect = 4e-10
 Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 3/78 (3%)

Query: 87  DITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINP 146
           D   +Y +    + + A AL+  G ++GD+V++  ENR +Y +  +A + LG   + IN 
Sbjct: 1   DRRLSYAEFNAWANRYAHALRALGVKKGDVVALLMENRPEYLLAWLALAKLGAVAALINT 60

Query: 147 QYTEVVKELSQHCVGGLE 164
                 + L+ HC+   +
Sbjct: 61  TQRG--EVLA-HCINVSD 75

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444

>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 53.0 bits (128), Expect = 3e-08
 Identities = 17/62 (27%), Positives = 28/62 (45%)

Query: 87  DITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINP 146
              YTY ++ ++  +LA  L   G R GD V++  +N  ++     A + LG     IN 
Sbjct: 1   GRRYTYAELAERVNRLAAGLLALGVRPGDRVALMLDNCPEFLRAWFALNKLGAVAVPINT 60

Query: 147 QY 148
             
Sbjct: 61  AL 62

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421

>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE)

 Score = 51.0 bits (123), Expect = 1e-07
 Identities = 24/95 (25%), Positives = 49/95 (51%), Gaps = 12/95 (12%)

Query: 89  TYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQY 148
           + T+ ++ Q+  QLA+ L   G RRGD V++ ++N +++ +L +A   LG  V  +NP+ 
Sbjct: 1   SLTFQELDQRVSQLAEQLAALGVRRGDRVALLAKNSIEFLLLFLALLRLGAVVLPLNPRL 60

Query: 149 TEVVKELSQHCVGGLELQQKRVEIGALAEETNSLL 183
            +             ELQQ+  ++    +   +++
Sbjct: 61  PQE------------ELQQQLADLQPDLDRPATII 83

O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407

>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS)

 Score = 50.7 bits (122), Expect = 1e-07
 Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 3/73 (4%)

Query: 89  TYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQY 148
           + TY ++  +S +LA AL   G   GD V++ +    +Y VL +A    G     +NP Y
Sbjct: 11  SLTYGELDARSGRLAKALLALGLLPGDRVAVLAPKSAEYVVLYLAIWRAGGVAVPLNPSY 70

Query: 149 TEVVKELSQHCVG 161
                EL+ + + 
Sbjct: 71  PA--AELA-YILS 80

MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430

>gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated

 Score = 50.8 bits (122), Expect = 1e-07
 Identities = 25/59 (42%), Positives = 32/59 (54%)

Query: 91  TYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYT 149
           TY ++ + S  LA  LQ RG  +G  V+I   N L YPV I A    G  V ++NP YT
Sbjct: 50  TYGELDELSRALAAWLQSRGLAKGARVAIMMPNVLQYPVAIAAVLRAGYVVVNVNPLYT 108

Length = 557

>gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated

 Score = 49.9 bits (120), Expect = 3e-07
 Identities = 18/75 (24%), Positives = 37/75 (49%), Gaps = 3/75 (4%)

Query: 87  DITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINP 146
           D + +Y ++  ++ + A     RG  +GD+V++  ENR +Y    +  + LG  V+ +N 
Sbjct: 60  DQSISYAELNARANRYAHWAAARGVGKGDVVALLMENRPEYLAAWLGLAKLGAVVALLN- 118

Query: 147 QYTEVVKELSQHCVG 161
             T+    +  H + 
Sbjct: 119 --TQQRGAVLAHSLN 131

Length = 600

>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase)

 Score = 49.5 bits (119), Expect = 3e-07
 Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 2/68 (2%)

Query: 89  TYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQY 148
             TY ++   + +LA AL + G R GD+V+    N  ++ V+ +A + +G  ++ I P Y
Sbjct: 1   RLTYGELDDAADRLAAALAELGVRPGDVVAFQLPNWWEFVVVYLACARIGAVINPIVPIY 60

Query: 149 TEVVKELS 156
            E  +EL 
Sbjct: 61  RE--RELG 66

Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437

>gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 17/69 (24%), Positives = 37/69 (53%)

Query: 78  LLFQIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLL 137
           ++F  +       TY D+ ++  +LA+AL+  G  +GD V+I   N  +  + ++A + +
Sbjct: 29  IIFDGEDGLFRELTYGDLRREVARLANALKDLGGVKGDRVAIYMPNSPEAVIALLATARI 88

Query: 138 GITVSSINP 146
           G   + ++P
Sbjct: 89  GAIPAVVSP 97

Length = 528

>gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase

 Score = 47.7 bits (114), Expect = 1e-06
 Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 2/77 (2%)

Query: 82  IDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITV 141
           ID  T   YTY D+   S ++A  L K G R+GD+V +   N  ++ +  + AS  G   
Sbjct: 43  IDGATGRVYTYADVELLSRRVAAGLHKLGIRQGDVVMLLLPNCPEFVLAFLGASRRGAVT 102

Query: 142 SSINPQYT--EVVKELS 156
           ++ NP YT  E+ K+  
Sbjct: 103 TTANPFYTPAEIAKQAK 119

Length = 537

>gnl|CDD|213305 cd05939, hsFATP4_like, Fatty acid transport proteins (FATP), including FATP4 and FATP1, and similar proteins

 Score = 47.4 bits (113), Expect = 2e-06
 Identities = 19/59 (32%), Positives = 38/59 (64%)

Query: 87  DITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSIN 145
           D  +T+ ++ + S ++A+  Q +GYR GD+V++  ENRL++  L +  + +G+  + IN
Sbjct: 1   DRHWTFRELNEYSNKVANFFQAQGYRSGDVVALFMENRLEFVALWLGLAKIGVETALIN 59

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes FATP4, FATP1, and homologous proteins. Each FATP has unique patterns of tissue distribution. FATP4 is mainly expressed in the brain, testis, colon and kidney. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 474

>gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional

 Score = 46.2 bits (110), Expect = 4e-06
 Identities = 27/106 (25%), Positives = 42/106 (39%), Gaps = 23/106 (21%)

Query: 82  IDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITV 141
           I A T    TY ++ ++S +LA   +  G +RGD V+I  EN L Y  +  AA   G+  
Sbjct: 17  IMASTGEVVTYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLEVCWAAERSGLYY 76

Query: 142 SSINPQYT-----------------------EVVKELSQHCVGGLE 164
           + +N   T                       +V + L + C G   
Sbjct: 77  TCVNSHLTPAEAAYIVDDSGARALITSAAKLDVARALLKQCPGVRH 122

Length = 511

>gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated

 Score = 45.9 bits (109), Expect = 7e-06
 Identities = 20/62 (32%), Positives = 35/62 (56%)

Query: 87  DITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINP 146
           D   +  ++     +LA  L  +G RRGD V++   N +++ VL +A + LG TV ++N 
Sbjct: 33  DRPLSRAELRALVDRLAAWLAAQGVRRGDRVAVWLPNCIEWVVLFLACARLGATVIAVNT 92

Query: 147 QY 148
           +Y
Sbjct: 93  RY 94

Length = 540

>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C)

 Score = 44.8 bits (107), Expect = 1e-05
 Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 7/58 (12%)

Query: 84  AVT--DITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGI 139
           A+   D + TY ++ +++ +LA  L+ RG   GD+V++  E   +   L+VA  +L I
Sbjct: 5   ALVYGDRSLTYAELNERANRLARRLRARGVGPGDVVALLLERSPE---LVVA--ILAI 57

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474

>gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases

 Score = 44.4 bits (106), Expect = 2e-05
 Identities = 17/62 (27%), Positives = 31/62 (50%)

Query: 89  TYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQY 148
           T T+ ++ ++  +LA  L   G + GD V+I +ENR ++ +  +A    G     I P  
Sbjct: 5   TITWAELAERVRRLAAGLIALGVKPGDRVAILAENRPEWVIADLAILAAGAVPVPIYPTS 64

Query: 149 TE 150
           + 
Sbjct: 65  SP 66

This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456

>gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS)

 Score = 43.8 bits (104), Expect = 3e-05
 Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 2/72 (2%)

Query: 91  TYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTE 150
           TY + L++   +A AL   G      + I S N +++ +L +AA   G+ V+ ++P Y+ 
Sbjct: 27  TYAEALRQVRAIAQALLDLGLSAERPLMILSGNSIEHALLALAAMYAGVPVAPVSPAYSL 86

Query: 151 VVKELS--QHCV 160
           + K+ +  +H  
Sbjct: 87  LSKDFAKLRHIF 98

Feruloyl-CoA synthetase is an essential enzyme in the feruloyl acid degradation pathway and enables some proteobacteria to grow on media containing feruloyl acid as the sole carbon source. It catalyzes the transfer of CoA to the carboxyl group of ferulic acid, which then forms feruloyl-CoA in the presence of ATP and Mg2. The resulting feruloyl-CoA is further degraded to vanillin and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a subfamily of the adenylate-forming enzymes superfamily. Length = 559

>gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated

 Score = 43.0 bits (102), Expect = 5e-05
 Identities = 21/64 (32%), Positives = 34/64 (53%)

Query: 82  IDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITV 141
           I A +    TY ++  +S +LA  L+  G R GD+V+I  EN  ++  +  AA   G+  
Sbjct: 4   IMAPSGEVVTYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYY 63

Query: 142 SSIN 145
           + IN
Sbjct: 64  TPIN 67

Length = 502

>gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated

 Score = 43.0 bits (102), Expect = 5e-05
 Identities = 17/59 (28%), Positives = 29/59 (49%)

Query: 91  TYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYT 149
           TY ++  +  + A AL   G  +GD V+I + N   + +  + A   G  V  +N +YT
Sbjct: 32  TYAELNARVRRAAAALAALGIGKGDRVAIWAPNSPHWVIAALGALKAGAVVVPLNTRYT 90

Length = 513

>gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed

 Score = 42.9 bits (102), Expect = 6e-05
 Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 2/76 (2%)

Query: 88  ITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQ 147
              TY + L++   +A AL  RG      + I S N +++ +L +AA   G+  + ++P 
Sbjct: 68  RRLTYAEALERVRAIAQALLDRGLSAERPLMILSGNSIEHALLALAAMYAGVPYAPVSPA 127

Query: 148 YTEVVKELS--QHCVG 161
           Y+ V ++    +H + 
Sbjct: 128 YSLVSQDFGKLRHVLE 143

Length = 614

>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes

 Score = 42.3 bits (100), Expect = 8e-05
 Identities = 14/71 (19%), Positives = 30/71 (42%), Gaps = 2/71 (2%)

Query: 87  DITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINP 146
           + + TY ++   + + A+ L+  G   GD V +   +  +     +A    G    ++NP
Sbjct: 8   EQSLTYRELHDLANRFANVLRALGVSPGDRVLLLLPDSPELVAAFLACLKAGAVAVALNP 67

Query: 147 QYTEVVKELSQ 157
             T   ++L  
Sbjct: 68  LLTP--QDLEH 76

This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436

>gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase

 Score = 42.4 bits (100), Expect = 8e-05
 Identities = 19/60 (31%), Positives = 36/60 (60%)

Query: 91  TYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTE 150
           T+ D+  ++  LA AL+ +G R G  V++  +N ++  +L+ A  LLG  ++ +N + TE
Sbjct: 1   TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTE 60

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436

>gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 17/63 (26%), Positives = 27/63 (42%)

Query: 88  ITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQ 147
              TY ++ ++   LA  L   G   GD V+I + NR ++ +  +A   LG     I   
Sbjct: 44  EAITYRELYERVRALASGLLSLGIPAGDRVAIFAANRPEWAIADLAILALGAVSVPIYST 103

Query: 148 YTE 150
            T 
Sbjct: 104 STP 106

Length = 613

>gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1

 Score = 41.1 bits (96), Expect = 2e-04
 Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 2/77 (2%)

Query: 82  IDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITV 141
           ++AVT    TY ++++ + + A AL+  G R+G +V +   N  +Y ++ +     G   
Sbjct: 48  VEAVTGKAVTYGEVVRDTRRFAKALRSLGLRKGQVVVVVLPNVAEYGIVALGIMAAGGVF 107

Query: 142 SSINPQYTEVVKELSQH 158
           S  NP  T +  E+ + 
Sbjct: 108 SGANP--TALESEIKKQ 122

Length = 546

>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase

 Score = 40.0 bits (94), Expect = 4e-04
 Identities = 19/62 (30%), Positives = 32/62 (51%)

Query: 89  TYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQY 148
             TY ++L+   +LA  LQ++G R+GD V++  +N   + +   A    G  V  +NP  
Sbjct: 1   VITYAELLELVDRLAGLLQEKGVRKGDRVALYMQNSPQFVIAYYAILRAGAVVVPVNPMN 60

Query: 149 TE 150
            E
Sbjct: 61  RE 62

The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430

>gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS)

 Score = 40.1 bits (95), Expect = 5e-04
 Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 7/58 (12%)

Query: 84  AVT--DITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGI 139
           AV   D + TY ++ +++ +LA  L+ RG   GD+V+IC E   +   ++VA  +L +
Sbjct: 5   AVVFGDQSLTYRELNERANRLAHYLRARGVGPGDLVAICLERSPE---MVVA--ILAV 57

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445

>gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional

 Score = 40.1 bits (94), Expect = 5e-04
 Identities = 17/62 (27%), Positives = 30/62 (48%)

Query: 87  DITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINP 146
            + YT+  +     +LA  L   G + GD V I + N  ++ +   A + +G  + +INP
Sbjct: 43  ALRYTWRQLADAVDRLARGLLALGVQPGDRVGIWAPNCAEWLLTQFATARIGAILVNINP 102

Query: 147 QY 148
            Y
Sbjct: 103 AY 104

Length = 558

>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis

 Score = 39.9 bits (94), Expect = 6e-04
 Identities = 14/38 (36%), Positives = 22/38 (57%)

Query: 87  DITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENR 124
           D  YTY +   +  +LA AL K G  +GD+V++ + N 
Sbjct: 27  DRRYTYRETYDRCRRLASALSKLGIGKGDVVAVLAPNT 64

This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520

>gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated

 Score = 39.9 bits (93), Expect = 7e-04
 Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 2/64 (3%)

Query: 85  VTD--ITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVS 142
           VT   I  +Y D+ +    LA  L + G   GD V++   +  ++ V ++AAS   + V 
Sbjct: 37  VTADRIAISYRDLARLVDDLAGQLTRSGLLPGDRVALRMGSNAEFVVALLAASRADLVVV 96

Query: 143 SINP 146
            ++P
Sbjct: 97  PLDP 100

Length = 534

>gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated

 Score = 39.5 bits (93), Expect = 8e-04
 Identities = 18/64 (28%), Positives = 33/64 (51%)

Query: 87  DITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINP 146
           D   TY ++ +++ +LA  L  +G   GD V I + NR++Y   ++ A        ++N 
Sbjct: 26  DRRLTYAELEERANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGAFKARAVPVNVNY 85

Query: 147 QYTE 150
           +Y E
Sbjct: 86  RYVE 89

Length = 533

>gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 38.4 bits (89), Expect = 0.002
 Identities = 15/63 (23%), Positives = 29/63 (46%)

Query: 86  TDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSIN 145
                TY ++  ++ +LA  L   G   G+ V+I ++  L+  V ++A    G     ++
Sbjct: 249 GGQQLTYAELDARANRLARLLISLGVGPGETVAILADRSLELVVALLAVLKAGAAYVPLD 308

Query: 146 PQY 148
           P Y
Sbjct: 309 PLY 311

Length = 642

>gnl|CDD|234212 TIGR03443, alpha_am_amid, L-aminoadipate-semialdehyde dehydrogenase

 Score = 38.5 bits (90), Expect = 0.002
 Identities = 22/60 (36%), Positives = 32/60 (53%)

Query: 89  TYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQY 148
           ++TY  I + S  LA  L K G +RGD+V I +   +D  V ++     G T S I+P Y
Sbjct: 270 SFTYKQINEASNILAHYLLKTGIKRGDVVMIYAYRGVDLVVAVMGVLKAGATFSVIDPAY 329

Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. Length = 1389

>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA)

 Score = 38.0 bits (89), Expect = 0.002
 Identities = 17/65 (26%), Positives = 28/65 (43%)

Query: 85  VTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSI 144
           V   T TY ++ +++ +LA  L   G R GD V++      D    I+A    G     +
Sbjct: 12  VGGDTLTYAELKERADRLAARLLALGGRAGDPVAVYGHKSPDAYAAILACLKAGAAYVPL 71

Query: 145 NPQYT 149
           +P   
Sbjct: 72  DPSQP 76

DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447

>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like

 Score = 37.9 bits (88), Expect = 0.003
 Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 1/66 (1%)

Query: 82  IDAVTDITYTYDDILQKSLQLADALQKR-GYRRGDIVSICSENRLDYPVLIVAASLLGIT 140
           ID+ T  + +Y ++      +A  L    G R+GD+V +   N + +PV+ +A   LG  
Sbjct: 59  IDSSTGFSISYSELQPLVKSMAAGLYHVMGVRQGDVVLLLLPNSVYFPVIFLAVLSLGGI 118

Query: 141 VSSINP 146
           V+++NP
Sbjct: 119 VTTMNP 124

Length = 560

>gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Saframycin A gene cluster from Streptomyces lavendulae

 Score = 37.7 bits (88), Expect = 0.003
 Identities = 11/43 (25%), Positives = 21/43 (48%)

Query: 91  TYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVA 133
           TY ++ +++ +LA  L+  G      V +C     D  V ++A
Sbjct: 26  TYAELNRRANRLAARLRAAGVGPESRVGVCLRRSPDLVVALLA 68

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the saframycin A gene cluster from Streptomyces lavendulae which implicates the NRPS system for assembling the unusual tetrapeptidyl skeleton in an iterative manner. It also includes saframycin Mx1 produced by Myxococcus xanthus NRPS. Length = 449

>gnl|CDD|219977 pfam08700, Vps51, Vps51/Vps67

 Score = 35.3 bits (82), Expect = 0.003
 Identities = 14/41 (34%), Positives = 23/41 (56%)

Query: 164 ELQQKRVEIGALAEETNSLLKKNVFHNYMLFIETAKEISRI 204
           EL+Q   ++ A  EE    L++ V+ NY   I+ A  IS++
Sbjct: 23  ELRQIEKKLRAEIEELQEELRQLVYENYRDLIKAADTISKM 63

This family includes a presumed domain found in a number of components of vesicular transport. The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1. Cog1_N is the N-terminus of the Cog1 subunit of the eight-unit Conserved Oligomeric Golgi (COG) complex that participates in retrograde vesicular transport and is required to maintain normal Golgi structure and function. The subunits are located in two lobes and Cog1 serves to bind the two lobes together probably via the highly conserved N-terminal domain of approximately 85 residues. Length = 87

>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated

 Score = 37.7 bits (88), Expect = 0.003
 Identities = 17/61 (27%), Positives = 30/61 (49%)

Query: 86  TDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSIN 145
            D   TY  +  +  +   A +  G   GD V++ S NR +  + I AA L G+  ++++
Sbjct: 34  GDTRLTYGQLADRISRYIQAFEALGLGTGDAVALLSLNRPEVLMAIGAAQLAGLRRTALH 93

Query: 146 P 146
           P
Sbjct: 94  P 94

Length = 524

>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score = 37.3 bits (87), Expect = 0.003
 Identities = 13/61 (21%), Positives = 27/61 (44%)

Query: 90  YTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYT 149
           +T+ ++ ++S + A+ L+  G  RGD V++      +   +I+    LG        Q  
Sbjct: 1   WTFAELKEESDRAANFLKDLGVGRGDRVAVLLPRVPELWAVILGCIKLGAVFIPGTTQLG 60

Query: 150 E 150
            
Sbjct: 61  P 61

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430

>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 37.2 bits (87), Expect = 0.004
 Identities = 15/67 (22%), Positives = 34/67 (50%), Gaps = 2/67 (2%)

Query: 91  TYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTE 150
           T+ ++ +  + +A  L   G ++GD V++  +N ++  ++I A   LG     +N + + 
Sbjct: 29  TFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHALQQLGAVAVLLNTRLS- 87

Query: 151 VVKELSQ 157
             +EL  
Sbjct: 88  -REELLW 93

Length = 483

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	214
KOG1177|consensus	596		99.67
PTZ00342	746	acyl-CoA synthetase; Provisional	99.61
PLN02614	666	long-chain acyl-CoA synthetase	99.61
PLN02861	660	long-chain-fatty-acid-CoA ligase	99.6
PTZ00237	647	acetyl-CoA synthetase; Provisional	99.59
PTZ00216	700	acyl-CoA synthetase; Provisional	99.56
KOG1256|consensus	691		99.55
PLN02654	666	acetate-CoA ligase	99.55
PF00501	417	AMP-binding: AMP-binding enzyme; InterPro: IPR0008	99.55
PLN02387	696	long-chain-fatty-acid-CoA ligase family protein	99.55
PLN03102	579	acyl-activating enzyme; Provisional	99.55
TIGR02316	628	propion_prpE propionate--CoA ligase. This family c	99.54
PLN02860	563	o-succinylbenzoate-CoA ligase	99.54
TIGR02188	625	Ac_CoA_lig_AcsA acetate--CoA ligase. This model de	99.54
PLN02736	651	long-chain acyl-CoA synthetase	99.54
PLN02430	660	long-chain-fatty-acid-CoA ligase	99.54
COG0318	534	CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l	99.53
PLN03052	728	acetate--CoA ligase; Provisional	99.53
PRK07788	549	acyl-CoA synthetase; Validated	99.52
PRK10524	629	prpE propionyl-CoA synthetase; Provisional	99.51
PRK12582	624	acyl-CoA synthetase; Provisional	99.51
PRK08180	614	feruloyl-CoA synthase; Reviewed	99.51
PRK05857	540	acyl-CoA synthetase; Validated	99.5
PRK00174	637	acetyl-CoA synthetase; Provisional	99.5
PRK05852	534	acyl-CoA synthetase; Validated	99.49
PRK13382	537	acyl-CoA synthetase; Provisional	99.49
PRK07798	533	acyl-CoA synthetase; Validated	99.49
PRK09274	552	peptide synthase; Provisional	99.48
PRK13390	501	acyl-CoA synthetase; Provisional	99.48
PRK13295	547	cyclohexanecarboxylate-CoA ligase; Reviewed	99.48
PRK06155	542	crotonobetaine/carnitine-CoA ligase; Provisional	99.47
PRK06087	547	short chain acyl-CoA synthetase; Reviewed	99.47
PLN02246	537	4-coumarate--CoA ligase	99.47
PLN02479	567	acetate-CoA ligase	99.46
PRK03584	655	acetoacetyl-CoA synthetase; Provisional	99.46
TIGR01217	652	ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym	99.46
PRK12583	558	acyl-CoA synthetase; Provisional	99.46
PRK05605	573	long-chain-fatty-acid--CoA ligase; Validated	99.46
PRK05677	562	long-chain-fatty-acid--CoA ligase; Validated	99.46
PRK13388	540	acyl-CoA synthetase; Provisional	99.46
PLN02330	546	4-coumarate--CoA ligase-like 1	99.45
TIGR03089	227	conserved hypothetical protein TIGR03089. This pro	99.45
PLN02574	560	4-coumarate--CoA ligase-like	99.45
PRK08315	559	AMP-binding domain protein; Validated	99.45
PTZ00297	1452	pantothenate kinase; Provisional	99.45
PRK13383	516	acyl-CoA synthetase; Provisional	99.44
PRK04319	570	acetyl-CoA synthetase; Provisional	99.44
PRK07529	632	AMP-binding domain protein; Validated	99.44
PRK06060	705	acyl-CoA synthetase; Validated	99.44
PRK08008	517	caiC putative crotonobetaine/carnitine-CoA ligase;	99.44
TIGR03443	1389	alpha_am_amid L-aminoadipate-semialdehyde dehydrog	99.44
PRK07868	994	acyl-CoA synthetase; Validated	99.43
PRK03640	483	O-succinylbenzoic acid--CoA ligase; Provisional	99.43
PRK06018	542	putative acyl-CoA synthetase; Provisional	99.43
COG0365	528	Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l	99.42
TIGR03205	541	pimA dicarboxylate--CoA ligase PimA. PimA, a membe	99.42
PRK08314	546	long-chain-fatty-acid--CoA ligase; Validated	99.42
PRK06334	539	long chain fatty acid--[acyl-carrier-protein] liga	99.42
PRK06164	540	acyl-CoA synthetase; Validated	99.41
PRK06839	496	acyl-CoA synthetase; Validated	99.41
PRK08279	600	long-chain-acyl-CoA synthetase; Validated	99.41
PRK06178	567	acyl-CoA synthetase; Validated	99.41
COG1022	613	FAA1 Long-chain acyl-CoA synthetases (AMP-forming)	99.41
PRK07059	557	Long-chain-fatty-acid--CoA ligase; Validated	99.41
PRK07514	504	malonyl-CoA synthase; Validated	99.41
PRK07656	513	long-chain-fatty-acid--CoA ligase; Validated	99.4
PRK08162	545	acyl-CoA synthetase; Validated	99.4
PRK07867	529	acyl-CoA synthetase; Validated	99.4
PRK06710	563	long-chain-fatty-acid--CoA ligase; Validated	99.39
PRK07786	542	long-chain-fatty-acid--CoA ligase; Validated	99.39
PRK12492	562	long-chain-fatty-acid--CoA ligase; Provisional	99.39
PRK05850	578	acyl-CoA synthetase; Validated	99.38
PRK07638	487	acyl-CoA synthetase; Validated	99.38
PRK06187	521	long-chain-fatty-acid--CoA ligase; Validated	99.38
PRK06145	497	acyl-CoA synthetase; Validated	99.38
PRK08043	718	bifunctional acyl-[acyl carrier protein] synthetas	99.38
PRK13391	511	acyl-CoA synthetase; Provisional	99.38
PRK09088	488	acyl-CoA synthetase; Validated	99.38
PRK08751	560	putative long-chain fatty acyl CoA ligase; Provisi	99.37
PRK10252	1296	entF enterobactin synthase subunit F; Provisional	99.37
PRK12467	3956	peptide synthase; Provisional	99.37
PRK05620	576	long-chain-fatty-acid--CoA ligase; Validated	99.37
PRK12467	3956	peptide synthase; Provisional	99.37
PRK08316	523	acyl-CoA synthetase; Validated	99.37
TIGR03208	538	cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase.	99.36
PRK05691	4334	peptide synthase; Validated	99.35
PRK07470	528	acyl-CoA synthetase; Validated	99.35
TIGR01734	502	D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig	99.35
PRK05691	4334	peptide synthase; Validated	99.35
PRK07008	539	long-chain-fatty-acid--CoA ligase; Validated	99.35
TIGR02275	527	DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot	99.34
TIGR03098	515	ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor	99.34
PRK12476	612	putative fatty-acid--CoA ligase; Provisional	99.34
PRK12316	5163	peptide synthase; Provisional	99.34
PRK04813	503	D-alanine--poly(phosphoribitol) ligase subunit 1;	99.33
KOG1179|consensus	649		99.33
PRK12316	5163	peptide synthase; Provisional	99.33
PRK06188	524	acyl-CoA synthetase; Validated	99.33
COG1021	542	EntE Peptide arylation enzymes [Secondary metaboli	99.32
PRK08974	560	long-chain-fatty-acid--CoA ligase; Validated	99.32
PRK07769	631	long-chain-fatty-acid--CoA ligase; Validated	99.31
PRK09029	458	O-succinylbenzoic acid--CoA ligase; Provisional	99.3
TIGR02262	508	benz_CoA_lig benzoate-CoA ligase family. Character	99.3
PRK07768	545	long-chain-fatty-acid--CoA ligase; Validated	99.3
KOG1176|consensus	537		99.26
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.26
PRK12406	509	long-chain-fatty-acid--CoA ligase; Provisional	99.25
PRK09192	579	acyl-CoA synthetase; Validated	99.24
PRK10946	536	entE enterobactin synthase subunit E; Provisional	99.24
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.23
PRK08276	502	long-chain-fatty-acid--CoA ligase; Validated	99.19
PRK07787	471	acyl-CoA synthetase; Validated	99.17
PRK05851	525	long-chain-fatty-acid--[acyl-carrier-protein] liga	99.11
PRK08308	414	acyl-CoA synthetase; Validated	99.11
PRK07445	452	O-succinylbenzoic acid--CoA ligase; Reviewed	99.1
TIGR01923	436	menE O-succinylbenzoate-CoA ligase. This model rep	99.08
KOG1180|consensus	678		99.02
COG1020	642	EntF Non-ribosomal peptide synthetase modules and	98.97
TIGR01733	408	AA-adenyl-dom amino acid adenylation domain. This	98.95
KOG1175|consensus	626		98.94
KOG3628|consensus	1363		98.63
PLN03051	499	acyl-activating enzyme; Provisional	97.56
KOG1178|consensus	1032		95.36
KOG3628|consensus	1363		95.27
COG1541	438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	94.37
TIGR03335	445	F390_ftsA coenzyme F390 synthetase. This enzyme, c	83.6

>KOG1177|consensus

Probab=99.67  E-value=5.1e-16  Score=133.61  Aligned_cols=102  Identities=19%  Similarity=0.209  Sum_probs=92.7

Q ss_pred             ccchhhHHHHHHHhhcccccCCCceEEEeCCCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHH
Q psy16164         55 CCMISGLILFIFQYIQPNVVHYRLLFQIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAA  134 (214)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~pd~~al~~~~~~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~  134 (214)
                      ..++++.+....+      ..||+.|+++...|.++||+|+.+.++.+|.+|.++|+++||+|++..||+.+|+...+||
T Consensus        49 ~~Tigq~l~~~t~------~v~dkea~Vf~~eg~R~Tf~~~~~ev~slAaGll~lGL~kGDrVgvwgpN~~~w~l~~lA~  122 (596)
T KOG1177|consen   49 SETIGQLLETTTE------RVPDKEAAVFDHEGIRLTFSEFVSEVESLAAGLLSLGLKKGDRVGVWGPNSYEWVLCQLAC  122 (596)
T ss_pred             cccHHHHHHHHhh------ccCcceEEEEeeccchhhHHHHHHHHHHHHhhHHhhcCCCCCEEEEecCChHHHHHHHHHH
Confidence            3467776655543      5899999998878889999999999999999999999999999999999999999999999


Q ss_pred             HHcCCEEEecCCCCchhHHHHHHHhhcCce
Q psy16164        135 SLLGITVSSINPQYTEVVKELSQHCVGGLE  164 (214)
Q Consensus       135 ~~~G~i~vpl~~~~~~~~~~l~~~l~~s~~  164 (214)
                      .++|.+.|++||.|..  +|+.|.+...++
T Consensus       123 A~AG~v~v~~NP~Yq~--~elr~~L~k~~~  150 (596)
T KOG1177|consen  123 ARAGLVLVNLNPAYQS--EELRYVLKKVGC  150 (596)
T ss_pred             HHhceEEeccCccccc--HHHHHHHhhcCe
Confidence            9999999999999999  999999998774

>PTZ00342 acyl-CoA synthetase; Provisional

Probab=99.61  E-value=5.7e-15  Score=137.71  Aligned_cols=121  Identities=16%  Similarity=0.219  Sum_probs=95.3

Q ss_pred             HHHhhcccc-cCCCceEEEeCCCC---eeeeHHHHHHHHHHHHHHHHHc---CCCCC-----------CEEEEEeCCCCc
Q psy16164         65 IFQYIQPNV-VHYRLLFQIDAVTD---ITYTYDDILQKSLQLADALQKR---GYRRG-----------DIVSICSENRLD  126 (214)
Q Consensus        65 ~~~~~~~~~-~~pd~~al~~~~~~---~~~Ty~el~~~~~~la~~L~~~---Gl~~g-----------d~V~i~~~n~~~  126 (214)
                      +.+.+.+.+ .+|+++|+++...|   +++||+|+.+++.++|++|.++   |+++|           |+|+|+++|+++
T Consensus        63 l~~~l~~~~~~~p~~~Al~~~~~g~~~~~~Ty~el~~~v~~~A~~L~~~~~~Gv~~g~~~~~~~~g~~d~V~i~~~N~~e  142 (746)
T PTZ00342         63 IMKLLLEKYKLNNNKIAIVEHSCGEPQNYITYGNFFKKVLSFSHSLNTYEGKGIPEKKYNEEQNNGKFKLLGLYGSNSIN  142 (746)
T ss_pred             HHHHHHHHHhhcCCceeEeccCCCCCceeeeHHHHHHHHHHHHHHHHHHhhcCCCcCccccccccccccEEEEEcCCCHH
Confidence            333343333 48999999864223   6899999999999999999974   99998           999999999999


Q ss_pred             HHHHHHHHHHcCCEEEecCCCCchhHHHHHHHhhcCc--eeecchHHHhhhh---hhhccccccccc
Q psy16164        127 YPVLIVAASLLGITVSSINPQYTEVVKELSQHCVGGL--ELQQKRVEIGALA---EETNSLLKKNVF  188 (214)
Q Consensus       127 ~~~~~lA~~~~G~i~vpl~~~~~~~~~~l~~~l~~s~--~~~~~~~~~~~~~---~~~~~~l~~ii~  188 (214)
                      |+++++||+++|++.||+++++++  +++.|++++++  ++.+....+..+.   .+. +.+++++.
T Consensus       143 w~~~~lA~~~~Gav~Vpl~~~~~~--~el~~il~~s~~~~lv~~~~~~~~l~~~~~~~-~~l~~ii~  206 (746)
T PTZ00342        143 WLVADLACMLSGVTTLVMHSKFSI--DVIVDILNETKLEWLCLDLDLVEGLLERKNEL-PHLKKLII  206 (746)
T ss_pred             HHHHHHHHHHcCCeEEEecCCCCH--HHHHHHHhcCCCCEEEEcHHHHHHHHHhhccC-CCceEEEE
Confidence            999999999999999999999999  99999999887  4444443333332   222 35666653

>PLN02614 long-chain acyl-CoA synthetase

Probab=99.61  E-value=6.8e-15  Score=135.95  Aligned_cols=88  Identities=10%  Similarity=0.089  Sum_probs=81.0

Q ss_pred             cCCCceEEEeCC-----CC--eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCC
Q psy16164         74 VHYRLLFQIDAV-----TD--ITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINP  146 (214)
Q Consensus        74 ~~pd~~al~~~~-----~~--~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~  146 (214)
                      .+||++|+.+..     .+  .++||+|+.++++++|++|.++|+++||+|+|+++|+++|+++++||+++|+++||+|+
T Consensus        57 ~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~Gd~Vai~~~n~~e~~~~~lA~~~~Gav~vpl~~  136 (666)
T PLN02614         57 KYPNNPMLGRREIVDGKPGKYVWQTYQEVYDIVIKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEACNAHGLYCVPLYD  136 (666)
T ss_pred             hCCCCCeEEEecccCCCCCCcEEeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEecC
Confidence            589999997421     12  35899999999999999999999999999999999999999999999999999999999


Q ss_pred             CCchhHHHHHHHhhcCc
Q psy16164        147 QYTEVVKELSQHCVGGL  163 (214)
Q Consensus       147 ~~~~~~~~l~~~l~~s~  163 (214)
                      .+++  +++.|++++++
T Consensus       137 ~~~~--~~l~~il~~~~  151 (666)
T PLN02614        137 TLGA--GAVEFIISHSE  151 (666)
T ss_pred             CCCH--HHHHHHHhccC
Confidence            9999  99999999887

>PLN02861 long-chain-fatty-acid-CoA ligase

Probab=99.60  E-value=6.9e-15  Score=135.75  Aligned_cols=88  Identities=15%  Similarity=0.174  Sum_probs=81.1

Q ss_pred             cCCCceEEEeC-----CCC--eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCC
Q psy16164         74 VHYRLLFQIDA-----VTD--ITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINP  146 (214)
Q Consensus        74 ~~pd~~al~~~-----~~~--~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~  146 (214)
                      .+|+++|+...     ..|  .++||+|+.+++.++|.+|.++|+++||+|+|+++|+++|+++++||+++|+++||+++
T Consensus        55 ~~p~~~al~~~~~~~~~~g~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~  134 (660)
T PLN02861         55 KYPNNQMLGRRQVTDSKVGPYVWLTYKEVYDAAIRIGSAIRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQGITYVPLYD  134 (660)
T ss_pred             hCCCCCeEEEEecCCCCCCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEecC
Confidence            58999998642     112  47999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCchhHHHHHHHhhcCc
Q psy16164        147 QYTEVVKELSQHCVGGL  163 (214)
Q Consensus       147 ~~~~~~~~l~~~l~~s~  163 (214)
                      .++.  +++.|++++++
T Consensus       135 ~~~~--~~l~~il~~s~  149 (660)
T PLN02861        135 TLGA--NAVEFIINHAE  149 (660)
T ss_pred             CCCH--HHHHHHHHcCC
Confidence            9999  99999999877

>PTZ00237 acetyl-CoA synthetase; Provisional

Probab=99.59  E-value=7.2e-15  Score=135.33  Aligned_cols=87  Identities=18%  Similarity=0.170  Sum_probs=81.3

Q ss_pred             CCCceEEEeCCC----CeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCch
Q psy16164         75 HYRLLFQIDAVT----DITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTE  150 (214)
Q Consensus        75 ~pd~~al~~~~~----~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~~  150 (214)
                      +|+++|+++..+    .+++||+||.+++.++|+.|+++|+++||+|+++++|+++++++++||+++|++++|+++.+++
T Consensus        74 ~~~~~A~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GDrV~i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~  153 (647)
T PTZ00237         74 KRDQDALIYECPYLKKTIKLTYYQLYEKVCEFSRVLLNLNISKNDNVLIYMANTLEPLIAMLSCARIGATHCVLFDGYSV  153 (647)
T ss_pred             CCCceEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCcEEEeeCCCCCH
Confidence            689999987422    3589999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHhhcCc
Q psy16164        151 VVKELSQHCVGGL  163 (214)
Q Consensus       151 ~~~~l~~~l~~s~  163 (214)
                        +++.+++++++
T Consensus       154 --~~l~~~l~~~~  164 (647)
T PTZ00237        154 --KSLIDRIETIT  164 (647)
T ss_pred             --HHHHHHHHhcC
Confidence              99999999877

>PTZ00216 acyl-CoA synthetase; Provisional

Probab=99.56  E-value=3.2e-14  Score=132.20  Aligned_cols=95  Identities=14%  Similarity=0.127  Sum_probs=85.0

Q ss_pred             Hhhcccc-cCCCceEEEeCC-------------------------CCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Q psy16164         67 QYIQPNV-VHYRLLFQIDAV-------------------------TDITYTYDDILQKSLQLADALQKRGYRRGDIVSIC  120 (214)
Q Consensus        67 ~~~~~~~-~~pd~~al~~~~-------------------------~~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~  120 (214)
                      +.+...+ .+||++|+.+..                         .++++||+|+.++++++|++|.++|+++||+|+|+
T Consensus        73 ~~~~~~~~~~p~~~a~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lTy~el~~~~~~lA~~L~~~Gv~~gd~V~i~  152 (700)
T PTZ00216         73 QRLERICKERGDRRALAYRPVERVEKEVVKDADGKERTMEVTHFNETRYITYAELWERIVNFGRGLAELGLTKGSNVAIY  152 (700)
T ss_pred             HHHHHHHHhCCCCCeEEEeccccccccccccCCCccccccccccCCceEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEE
Confidence            3333333 499999998631                         24689999999999999999999999999999999


Q ss_pred             eCCCCcHHHHHHHHHHcCCEEEecCCCCchhHHHHHHHhhcCc
Q psy16164        121 SENRLDYPVLIVAASLLGITVSSINPQYTEVVKELSQHCVGGL  163 (214)
Q Consensus       121 ~~n~~~~~~~~lA~~~~G~i~vpl~~~~~~~~~~l~~~l~~s~  163 (214)
                      ++|+++|+++++||+++|++++|+++.+++  +++.|++++++
T Consensus       153 ~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~--~~l~~il~~s~  193 (700)
T PTZ00216        153 EETRWEWLASIYGIWSQSMVAATVYANLGE--DALAYALRETE  193 (700)
T ss_pred             cCCCHHHHHHHHHHHHcCCeEEeeCCCCCH--HHHHhhhhccC
Confidence            999999999999999999999999999999  99999999876

>KOG1256|consensus

Probab=99.55  E-value=6.1e-14  Score=126.47  Aligned_cols=141  Identities=16%  Similarity=0.101  Sum_probs=112.3

Q ss_pred             HHHHHHHhhccccc-CCCceEEEeCC------CCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHH
Q psy16164         61 LILFIFQYIQPNVV-HYRLLFQIDAV------TDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVA  133 (214)
Q Consensus        61 ~~~~~~~~~~~~~~-~pd~~al~~~~------~~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA  133 (214)
                      -+..+++.+.+... +|+.+++-+..      ...++||+|+.+++..+|.+|+++|+++++.|||++-|++||+++.+|
T Consensus        73 ~~~T~~~~f~~~~~~~~~~p~LG~r~~~~~~~~~~~~tY~q~~e~~~~~~~~l~~lG~~~~~~VGIy~~N~pEWiis~~a  152 (691)
T KOG1256|consen   73 GPLTLYEGFRRSVEKSGNGPMLGTRVIVDGKGPYEWLTYKQVYERAENLGSGLRKLGVKEDSKVGIYAFNRPEWIISEMA  152 (691)
T ss_pred             CcccHHHHhhcchhccCCCCceeEEecccCCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCceEEEeccCChhhHHhHHH
Confidence            34556666666655 88889985442      235899999999999999999999999999999999999999999999


Q ss_pred             HHHcCCEEEecCCCCchhHHHHHHHhhcCce---eecchHHHhhhhhh----hcccccccc-------------------
Q psy16164        134 ASLLGITVSSINPQYTEVVKELSQHCVGGLE---LQQKRVEIGALAEE----TNSLLKKNV-------------------  187 (214)
Q Consensus       134 ~~~~G~i~vpl~~~~~~~~~~l~~~l~~s~~---~~~~~~~~~~~~~~----~~~~l~~ii-------------------  187 (214)
                      |...|++.||++.++++  +++.|++++++.   +.....++..+.+.    ..+.+|.+|                   
T Consensus       153 ~~~~~~v~VplYdTlg~--ea~~~Ii~~~e~~iv~vd~~~k~~~ll~~~~~~~~~~LK~iI~~~~~~~~~~~~~~~~gv~  230 (691)
T KOG1256|consen  153 CYAYSLVNVPLYDTLGA--EAVHYIINHAEISIVFVDNAKKAEKLLEIKENDSLPSLKAIIQLDEPSDELKEKAENNGVE  230 (691)
T ss_pred             HHhcCCEEeecccCCCH--HHHHHHHHhcceeEEEEeCHHHHHHHHhhcccccCccceeEEEecCCchhhhhhhhcCCeE
Confidence            99999999999999999  999999999883   33435555554431    134577766                   


Q ss_pred             ccchHHHHHhccchhh
Q psy16164        188 FHNYMLFIETAKEISR  203 (214)
Q Consensus       188 ~~~~~~~~~~~~~~~~  203 (214)
                      ..+|+++.+.|++..+
T Consensus       231 v~S~~e~~~lG~~~~~  246 (691)
T KOG1256|consen  231 VYSWDEFEELGKKNQR  246 (691)
T ss_pred             EEEHHHHHhhcccccC
Confidence            3678899888875433

>PLN02654 acetate-CoA ligase

Probab=99.55  E-value=2.3e-14  Score=132.48  Aligned_cols=87  Identities=23%  Similarity=0.328  Sum_probs=81.5

Q ss_pred             CCCceEEEeCC----CCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCch
Q psy16164         75 HYRLLFQIDAV----TDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTE  150 (214)
Q Consensus        75 ~pd~~al~~~~----~~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~~  150 (214)
                      +|+++|+++..    .++++||+||.+++.++|++|++.|+++||+|++++||+++++++++||+++|++++|+++.+++
T Consensus       102 ~~~~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~pn~~e~v~a~lA~~~~Gav~vpv~~~~~~  181 (666)
T PLN02654        102 NGDKIAIYWEGNEPGFDASLTYSELLDRVCQLANYLKDVGVKKGDAVVIYLPMLMELPIAMLACARIGAVHSVVFAGFSA  181 (666)
T ss_pred             CCCCEEEEEEcCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEecCCCCCH
Confidence            79999998732    23689999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHhhcCc
Q psy16164        151 VVKELSQHCVGGL  163 (214)
Q Consensus       151 ~~~~l~~~l~~s~  163 (214)
                        +++.+++++++
T Consensus       182 --~~l~~~l~~~~  192 (666)
T PLN02654        182 --ESLAQRIVDCK  192 (666)
T ss_pred             --HHHHHHHHhcC
Confidence              99999999877

>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]

Probab=99.55  E-value=2.5e-14  Score=124.22  Aligned_cols=88  Identities=25%  Similarity=0.315  Sum_probs=82.7

Q ss_pred             ccCCCceEEEeCCCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCchhH
Q psy16164         73 VVHYRLLFQIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTEVV  152 (214)
Q Consensus        73 ~~~pd~~al~~~~~~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~~~~  152 (214)
                      ..+||++|+++ ..++++||+|+.+++.++|..|.++|+++|++|+++++|+++++++++||+++|++++|++|.++.  
T Consensus         6 ~~~pd~~a~~~-~~~~~~Ty~~l~~~v~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~~A~~~~G~~~v~l~~~~~~--   82 (417)
T PF00501_consen    6 QRYPDRIALID-DEGRSLTYKQLYERVRKLAAALRKLGVKKGDRVAILLPNSIEFVVAFLACLRAGAIPVPLDPSLSE--   82 (417)
T ss_dssp             HHSTTSEEEEE-TTTEEEEHHHHHHHHHHHHHHHHHTTSSTTSEEEEEESSSHHHHHHHHHHHHTT-EEEEEETTSSH--
T ss_pred             hhCCCceEEEE-CCCEEEEHHHHHHHHHHHhhHHHHhCCCccccccccCCccceeeeeeccccccccccccccccccc--
Confidence            35999999999 458999999999999999999999999999999999999999999999999999999999999999  


Q ss_pred             HHHHHHhhcCc
Q psy16164        153 KELSQHCVGGL  163 (214)
Q Consensus       153 ~~l~~~l~~s~  163 (214)
                      +++.+.++.++
T Consensus        83 ~~~~~~l~~~~   93 (417)
T PF00501_consen   83 DELRHILRQSG   93 (417)
T ss_dssp             HHHHHHHHHHT
T ss_pred             ccccccccccc
Confidence            99999998776

This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....

>PLN02387 long-chain-fatty-acid-CoA ligase family protein

Probab=99.55  E-value=4e-14  Score=131.47  Aligned_cols=82  Identities=17%  Similarity=0.243  Sum_probs=75.1

Q ss_pred             eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCchhHHHHHHHhhcCc--eee
Q psy16164         89 TYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTEVVKELSQHCVGGL--ELQ  166 (214)
Q Consensus        89 ~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~~~~~~l~~~l~~s~--~~~  166 (214)
                      ++||+|+.+++.++|++|.++|+++||+|+|+++|+++|+++++||+++|+++||+|+.+++  +++.|++++++  ++.
T Consensus       106 ~~Ty~el~~~v~~lA~~L~~lG~~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~--~~l~~il~~s~~~~li  183 (696)
T PLN02387        106 WITYGQVFERVCNFASGLVALGHNKEERVAIFADTRAEWLIALQGCFRQNITVVTIYASLGE--EALCHSLNETEVTTVI  183 (696)
T ss_pred             EEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCH--HHHHHHHHccCCCEEE
Confidence            48999999999999999999999999999999999999999999999999999999999999  99999999877  444


Q ss_pred             cchHHH
Q psy16164        167 QKRVEI  172 (214)
Q Consensus       167 ~~~~~~  172 (214)
                      +....+
T Consensus       184 ~~~~~~  189 (696)
T PLN02387        184 CDSKQL  189 (696)
T ss_pred             ECHHHH
Confidence            444333

>PLN03102 acyl-activating enzyme; Provisional

Probab=99.55  E-value=7.8e-14  Score=126.80  Aligned_cols=86  Identities=15%  Similarity=0.169  Sum_probs=82.7

Q ss_pred             cCCCceEEEeCCCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCchhHH
Q psy16164         74 VHYRLLFQIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTEVVK  153 (214)
Q Consensus        74 ~~pd~~al~~~~~~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~~~~~  153 (214)
                      .+|+++|+++.  +.++||+||.++++++|++|.+.|+++||+|+|+++|+++|+++++||+++|++++|+|+.++.  +
T Consensus        26 ~~p~~~Al~~~--~~~~Ty~eL~~~~~~~a~~L~~~Gl~~gd~Vai~~~n~~e~~~~~la~~~~G~~~vpl~~~~~~--~  101 (579)
T PLN03102         26 CYPNRTSIIYG--KTRFTWPQTYDRCCRLAASLISLNITKNDVVSVLAPNTPAMYEMHFAVPMAGAVLNPINTRLDA--T  101 (579)
T ss_pred             hCCCCeEEEEC--CcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCcEEeeccccCCH--H
Confidence            58999999986  6799999999999999999999999999999999999999999999999999999999999999  9


Q ss_pred             HHHHHhhcCc
Q psy16164        154 ELSQHCVGGL  163 (214)
Q Consensus       154 ~l~~~l~~s~  163 (214)
                      ++.++++.++
T Consensus       102 ~l~~~l~~~~  111 (579)
T PLN03102        102 SIAAILRHAK  111 (579)
T ss_pred             HHHHHHhccC
Confidence            9999999776

>TIGR02316 propion_prpE propionate--CoA ligase

Probab=99.54  E-value=3e-14  Score=130.64  Aligned_cols=88  Identities=19%  Similarity=0.182  Sum_probs=82.1

Q ss_pred             cCCCceEEEeCC----CCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCc
Q psy16164         74 VHYRLLFQIDAV----TDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYT  149 (214)
Q Consensus        74 ~~pd~~al~~~~----~~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~  149 (214)
                      .+|+++|+++..    +++.+||+||.+++.++|++|+++|+++||+|+++++|+++++++++||+++|++++|+++.++
T Consensus        64 ~~p~~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~n~~e~v~~~lA~~~~Gav~vpl~~~~~  143 (628)
T TIGR02316        64 ERGEQLALVTVSSETGQERTLTYRQLHREVNVFASALRALGVGRGDRVLIYMPMIAEAVFAMLACARIGAIHSVVFGGFA  143 (628)
T ss_pred             cCCCCeEEEEEcCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEEecCCCCC
Confidence            489999998732    2468999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHhhcCc
Q psy16164        150 EVVKELSQHCVGGL  163 (214)
Q Consensus       150 ~~~~~l~~~l~~s~  163 (214)
                      .  +++.+++++++
T Consensus       144 ~--~~l~~~l~~~~  155 (628)
T TIGR02316       144 S--HSLALRIDDAT  155 (628)
T ss_pred             H--HHHHHHHHhcC
Confidence            9  99999999876

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate.

>PLN02860 o-succinylbenzoate-CoA ligase

Probab=99.54  E-value=3.3e-14  Score=128.66  Aligned_cols=86  Identities=22%  Similarity=0.248  Sum_probs=82.4

Q ss_pred             cCCCceEEEeCCCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCchhHH
Q psy16164         74 VHYRLLFQIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTEVVK  153 (214)
Q Consensus        74 ~~pd~~al~~~~~~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~~~~~  153 (214)
                      .+|+++|++++  ++.+||+||.+++.++|++|.+.|+++||+|+++++|+++|+++++||+++|++++|+|+.++.  +
T Consensus        19 ~~p~~~a~~~~--~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~v~~~n~~~~~~~~la~~~~Gav~vpl~~~~~~--~   94 (563)
T PLN02860         19 LRGNAVVTISG--NRRRTGHEFVDGVLSLAAGLLRLGLRNGDVVAIAALNSDLYLEWLLAVACAGGIVAPLNYRWSF--E   94 (563)
T ss_pred             hcCCceEEecC--CceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHhhccEEEEeCCcccCH--H
Confidence            59999999875  6799999999999999999999999999999999999999999999999999999999999999  9


Q ss_pred             HHHHHhhcCc
Q psy16164        154 ELSQHCVGGL  163 (214)
Q Consensus       154 ~l~~~l~~s~  163 (214)
                      ++.+++.+++
T Consensus        95 ~l~~~l~~~~  104 (563)
T PLN02860         95 EAKSAMLLVR  104 (563)
T ss_pred             HHHHHHHhcC
Confidence            9999999777

>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase

Probab=99.54  E-value=3.1e-14  Score=130.37  Aligned_cols=88  Identities=16%  Similarity=0.182  Sum_probs=82.1

Q ss_pred             cCCCceEEEeCCC----CeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCc
Q psy16164         74 VHYRLLFQIDAVT----DITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYT  149 (214)
Q Consensus        74 ~~pd~~al~~~~~----~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~  149 (214)
                      .+|+++|+++..+    .+.+||+||.+++.++|++|+++|+++||+|+++++|+++++++++||+++|++++|+++.++
T Consensus        69 ~~p~~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~v~i~~~~~  148 (625)
T TIGR02188        69 ARPDKVAIIWEGDEPGEVRKITYRELHREVCRFANVLKSLGVKKGDRVAIYMPMIPEAAIAMLACARIGAIHSVVFGGFS  148 (625)
T ss_pred             cCCCCeEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCCEEeccCCCCC
Confidence            4899999986432    358999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHhhcCc
Q psy16164        150 EVVKELSQHCVGGL  163 (214)
Q Consensus       150 ~~~~~l~~~l~~s~  163 (214)
                      +  +++.+++++++
T Consensus       149 ~--~~l~~~l~~~~  160 (625)
T TIGR02188       149 A--EALADRINDAG  160 (625)
T ss_pred             H--HHHHHHHHhcC
Confidence            9  99999999776

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501.

>PLN02736 long-chain acyl-CoA synthetase

Probab=99.54  E-value=1.2e-13  Score=127.26  Aligned_cols=88  Identities=11%  Similarity=0.052  Sum_probs=80.4

Q ss_pred             cCCCceEEEe---CCC----CeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCC
Q psy16164         74 VHYRLLFQID---AVT----DITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINP  146 (214)
Q Consensus        74 ~~pd~~al~~---~~~----~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~  146 (214)
                      .+|+++|+..   .+.    .+.+||+|+.++++++|++|+++|+++||+|+|+++|+++|+++++||+++|+++||+++
T Consensus        56 ~~p~~~al~~~~~~~~~~~~~~~lTy~el~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~  135 (651)
T PLN02736         56 TFRDYKYLGTRIRVDGTVGEYKWMTYGEAGTARTAIGSGLVQHGIPKGACVGLYFINRPEWLIVDHACSAYSYVSVPLYD  135 (651)
T ss_pred             hCCCCCeEEEEecCCCCCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEeec
Confidence            5999999842   111    246999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCchhHHHHHHHhhcCc
Q psy16164        147 QYTEVVKELSQHCVGGL  163 (214)
Q Consensus       147 ~~~~~~~~l~~~l~~s~  163 (214)
                      .+++  +++.+++++++
T Consensus       136 ~~~~--~~l~~il~~~~  150 (651)
T PLN02736        136 TLGP--DAVKFIVNHAE  150 (651)
T ss_pred             CCCH--HHHHHHHhccC
Confidence            9999  99999999776

>PLN02430 long-chain-fatty-acid-CoA ligase

Probab=99.54  E-value=6.3e-14  Score=129.41  Aligned_cols=88  Identities=15%  Similarity=0.087  Sum_probs=80.5

Q ss_pred             cCCCceEEEeCC-----CC--eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCC
Q psy16164         74 VHYRLLFQIDAV-----TD--ITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINP  146 (214)
Q Consensus        74 ~~pd~~al~~~~-----~~--~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~  146 (214)
                      .+|+++|+....     .+  .++||+|+.+++.++|++|.+.|+++||+|+|+++|+++|+++++||+++|+++||+++
T Consensus        54 ~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~ew~~~~lA~~~~G~v~vpl~~  133 (660)
T PLN02430         54 KYPDNKMLGWRRIVDGKVGPYMWKTYKEVYEEVLQIGSALRASGAEPGSRVGIYGSNCPQWIVAMEACAAHSLICVPLYD  133 (660)
T ss_pred             hCCCCceEEEEecCCCCCCCcEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEecc
Confidence            489999986421     11  35799999999999999999999999999999999999999999999999999999999


Q ss_pred             CCchhHHHHHHHhhcCc
Q psy16164        147 QYTEVVKELSQHCVGGL  163 (214)
Q Consensus       147 ~~~~~~~~l~~~l~~s~  163 (214)
                      ++++  +++.|++++++
T Consensus       134 ~~~~--~~l~~il~~~~  148 (660)
T PLN02430        134 TLGP--GAVDYIVDHAE  148 (660)
T ss_pred             CCCH--HHHHHHHhccC
Confidence            9999  99999999877

>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.53  E-value=5e-14  Score=127.10  Aligned_cols=88  Identities=25%  Similarity=0.229  Sum_probs=82.2

Q ss_pred             cCCCceEEEeCCCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCchhHH
Q psy16164         74 VHYRLLFQIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTEVVK  153 (214)
Q Consensus        74 ~~pd~~al~~~~~~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~~~~~  153 (214)
                      .+|+++|+++...+.++||+||.+++.++|..|++.|+++||+|+|+++|+++++++++||+++|++++|+||.+++  .
T Consensus        23 ~~~~~~a~~~~~~~~~~Ty~el~~~~~~~A~~L~~~~v~~gdrVail~~N~~e~~~~~~a~~~~Gav~vpln~~~~~--~  100 (534)
T COG0318          23 RNPDRPALIFLGRGGRLTYRELDRRANRLAAALQALGVKPGDRVAILLPNSPEFLIAFLAALRAGAVAVPLNPRLTP--R  100 (534)
T ss_pred             hCCCceEEEEcCCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcCEEEeecCcccCH--H
Confidence            58999999987333349999999999999999999999999999999999999999999999999999999999999  9


Q ss_pred             HHHHHhhcCc
Q psy16164        154 ELSQHCVGGL  163 (214)
Q Consensus       154 ~l~~~l~~s~  163 (214)
                      ++.+.+++++
T Consensus       101 ~l~~~l~~~~  110 (534)
T COG0318         101 ELAYILNDAG  110 (534)
T ss_pred             HHHHHHHhcC
Confidence            9999999876

>PLN03052 acetate--CoA ligase; Provisional

Probab=99.53  E-value=5.7e-14  Score=130.98  Aligned_cols=88  Identities=18%  Similarity=0.201  Sum_probs=82.3

Q ss_pred             cCCCceEEEeCCCC------eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCC
Q psy16164         74 VHYRLLFQIDAVTD------ITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQ  147 (214)
Q Consensus        74 ~~pd~~al~~~~~~------~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~  147 (214)
                      .+|+++|+++..++      +.+||+||.+++.++|+.|+++|+++||+|+++++|+++++++++||+++|++++|++|.
T Consensus       187 ~~pd~~Ai~~~~e~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrVai~~pn~~e~via~LA~~~~Gav~vpi~p~  266 (728)
T PLN03052        187 KTDDSIAIIWRDEGSDDLPVNRMTLSELRSQVSRVANALDALGFEKGDAIAIDMPMNVHAVIIYLAIILAGCVVVSIADS  266 (728)
T ss_pred             cCCCCeEEEEECCCCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcCCEEEeeCCC
Confidence            47999999876432      479999999999999999999999999999999999999999999999999999999999


Q ss_pred             CchhHHHHHHHhhcCc
Q psy16164        148 YTEVVKELSQHCVGGL  163 (214)
Q Consensus       148 ~~~~~~~l~~~l~~s~  163 (214)
                      +++  +++.+++++++
T Consensus       267 ~~~--~~l~~rl~~~~  280 (728)
T PLN03052        267 FAP--SEIATRLKISK  280 (728)
T ss_pred             CCH--HHHHHHHHhcC
Confidence            999  99999999776

>PRK07788 acyl-CoA synthetase; Validated

Probab=99.52  E-value=1.6e-13  Score=123.71  Aligned_cols=86  Identities=23%  Similarity=0.259  Sum_probs=82.5

Q ss_pred             cCCCceEEEeCCCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCchhHH
Q psy16164         74 VHYRLLFQIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTEVVK  153 (214)
Q Consensus        74 ~~pd~~al~~~~~~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~~~~~  153 (214)
                      .+||++|+++.  ++.+||+||.+++.++|+.|.+.|+++||+|+++++|+++|+++++||+++|++++|+++.++.  +
T Consensus        61 ~~pd~~Al~~~--~~~~Ty~el~~~~~~la~~L~~~gi~~gd~V~i~~~n~~~~~~~~la~~~~G~~~v~l~~~~~~--~  136 (549)
T PRK07788         61 RAPDRAALIDE--RGTLTYAELDEQSNALARGLLALGVRAGDGVAVLARNHRGFVLALYAAGKVGARIILLNTGFSG--P  136 (549)
T ss_pred             HCCCceEEEEC--CCceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCEEEEeCCCCCH--H
Confidence            59999999986  6799999999999999999999999999999999999999999999999999999999999999  9


Q ss_pred             HHHHHhhcCc
Q psy16164        154 ELSQHCVGGL  163 (214)
Q Consensus       154 ~l~~~l~~s~  163 (214)
                      ++.+.+++++
T Consensus       137 ~l~~~l~~~~  146 (549)
T PRK07788        137 QLAEVAAREG  146 (549)
T ss_pred             HHHHHHHhcC
Confidence            9999999776

>PRK10524 prpE propionyl-CoA synthetase; Provisional

Probab=99.51  E-value=8.4e-14  Score=127.60  Aligned_cols=88  Identities=19%  Similarity=0.226  Sum_probs=82.0

Q ss_pred             cCCCceEEEeCC----CCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCc
Q psy16164         74 VHYRLLFQIDAV----TDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYT  149 (214)
Q Consensus        74 ~~pd~~al~~~~----~~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~  149 (214)
                      .+|+++|+++..    ..+.+||+||.+++.++|++|+++|+++||+|+++++|+++++++++||+++|++++|+++.++
T Consensus        65 ~~p~~~A~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~v~~~~~~~  144 (629)
T PRK10524         65 KRPEQLALIAVSTETDEERTYTFRQLHDEVNRMAAMLRSLGVQRGDRVLIYMPMIAEAAFAMLACARIGAIHSVVFGGFA  144 (629)
T ss_pred             cCCCCeEEEEEcCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCcEEEeeCCCCC
Confidence            489999998632    2468999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHhhcCc
Q psy16164        150 EVVKELSQHCVGGL  163 (214)
Q Consensus       150 ~~~~~l~~~l~~s~  163 (214)
                      .  +++.+++.+++
T Consensus       145 ~--~~l~~~l~~~~  156 (629)
T PRK10524        145 S--HSLAARIDDAK  156 (629)
T ss_pred             H--HHHHHHHHhcC
Confidence            9  99999999877

>PRK12582 acyl-CoA synthetase; Provisional

Probab=99.51  E-value=2e-13  Score=125.24  Aligned_cols=90  Identities=20%  Similarity=0.153  Sum_probs=80.5

Q ss_pred             cCCCceEEEeCCC----CeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCc
Q psy16164         74 VHYRLLFQIDAVT----DITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYT  149 (214)
Q Consensus        74 ~~pd~~al~~~~~----~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~  149 (214)
                      .+||++|+++.+.    .+++||+||.++++++|.+|.+.|+++||+|+++++|+++|+++++||+++|++++|++|.++
T Consensus        61 ~~pd~~a~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~p~~~  140 (624)
T PRK12582         61 EAPDRPWLAQREPGHGQWRKVTYGEAKRAVDALAQALLDLGLDPGRPVMILSGNSIEHALMTLAAMQAGVPAAPVSPAYS  140 (624)
T ss_pred             HCCCchheecccCCCCceEEeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHHHcCCeEeeccCccc
Confidence            5899999986421    268999999999999999999999999999999999999999999999999999999999987


Q ss_pred             h---hHHHHHHHhhcCc
Q psy16164        150 E---VVKELSQHCVGGL  163 (214)
Q Consensus       150 ~---~~~~l~~~l~~s~  163 (214)
                      .   ..+++.+++++++
T Consensus       141 ~~~~~~~~l~~~l~~~~  157 (624)
T PRK12582        141 LMSHDHAKLKHLFDLVK  157 (624)
T ss_pred             cccCCHHHHHHHHHhcC
Confidence            3   1278999998776

>PRK08180 feruloyl-CoA synthase; Reviewed

Probab=99.51  E-value=2.1e-13  Score=124.83  Aligned_cols=88  Identities=22%  Similarity=0.230  Sum_probs=81.2

Q ss_pred             cCCCceEEEeCC---CCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCc-
Q psy16164         74 VHYRLLFQIDAV---TDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYT-  149 (214)
Q Consensus        74 ~~pd~~al~~~~---~~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~-  149 (214)
                      .+|+++|+++..   ..+++||+||.++++++|++|.+.|+++||+|+++++|+++|+++++||+++|++++|++|.++ 
T Consensus        51 ~~p~~~a~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~  130 (614)
T PRK08180         51 EAPDRVFLAERGADGGWRRLTYAEALERVRAIAQALLDRGLSAERPLMILSGNSIEHALLALAAMYAGVPYAPVSPAYSL  130 (614)
T ss_pred             HCCCCceeeeccCCCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHHHcCCeEeeecccccc
Confidence            589999998742   1368999999999999999999999999999999999999999999999999999999999998 


Q ss_pred             ----hhHHHHHHHhhcCc
Q psy16164        150 ----EVVKELSQHCVGGL  163 (214)
Q Consensus       150 ----~~~~~l~~~l~~s~  163 (214)
                          .  +++.+++++++
T Consensus       131 ~~~~~--~~l~~~l~~~~  146 (614)
T PRK08180        131 VSQDF--GKLRHVLELLT  146 (614)
T ss_pred             ccCCH--HHHHHHHhcCC
Confidence                6  89999999776

>PRK05857 acyl-CoA synthetase; Validated

Probab=99.50  E-value=2.1e-13  Score=122.92  Aligned_cols=88  Identities=15%  Similarity=0.152  Sum_probs=82.0

Q ss_pred             cCCCceEEEeCCCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCchhHH
Q psy16164         74 VHYRLLFQIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTEVVK  153 (214)
Q Consensus        74 ~~pd~~al~~~~~~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~~~~~  153 (214)
                      .+|+++|+++.+.+..+||+||.+++.++|+.|.+.|+++|++|+++++|+++++++++||+++|++++|+++.++.  +
T Consensus        26 ~~p~~~a~~~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~e~~~~~lA~~~~G~v~v~l~~~~~~--~  103 (540)
T PRK05857         26 QQPEAIALRRCDGTSALRYRELVAEVGGLAADLRAQSVSRGSRVLVISDNGPETYLSVLACAKLGAIAVMADGNLPI--A  103 (540)
T ss_pred             hCCCcEEEeecCCCceeeHHHHHHHHHHHHHHHHHhCcCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCccCCH--H
Confidence            58999999865445689999999999999999999999999999999999999999999999999999999999999  9


Q ss_pred             HHHHHhhcCc
Q psy16164        154 ELSQHCVGGL  163 (214)
Q Consensus       154 ~l~~~l~~s~  163 (214)
                      ++.+++..++
T Consensus       104 ~l~~~~~~~~  113 (540)
T PRK05857        104 AIERFCQITD  113 (540)
T ss_pred             HHHHHHHhcC
Confidence            9999988665

>PRK00174 acetyl-CoA synthetase; Provisional

Probab=99.50  E-value=1.1e-13  Score=126.98  Aligned_cols=88  Identities=18%  Similarity=0.223  Sum_probs=82.0

Q ss_pred             cCCCceEEEeCC----CCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCc
Q psy16164         74 VHYRLLFQIDAV----TDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYT  149 (214)
Q Consensus        74 ~~pd~~al~~~~----~~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~  149 (214)
                      .+|+++|+++..    .++.+||+||.+++.++|..|++.|+++||+|+++++|+++++++++||+++|++++|+++.++
T Consensus        79 ~~p~~~Al~~~~~~~~~~~~lTy~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~v~l~~~~~  158 (637)
T PRK00174         79 TRGDKVAIIWEGDDPGDSRKITYRELHREVCRFANALKSLGVKKGDRVAIYMPMIPEAAVAMLACARIGAVHSVVFGGFS  158 (637)
T ss_pred             cCCCCeEEEEECCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEecCCCCC
Confidence            489999998642    2358999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHhhcCc
Q psy16164        150 EVVKELSQHCVGGL  163 (214)
Q Consensus       150 ~~~~~l~~~l~~s~  163 (214)
                      .  +++.+++++++
T Consensus       159 ~--~~l~~~l~~~~  170 (637)
T PRK00174        159 A--EALADRIIDAG  170 (637)
T ss_pred             H--HHHHHHHHhcC
Confidence            9  99999999776

>PRK05852 acyl-CoA synthetase; Validated

Probab=99.49  E-value=2.2e-13  Score=122.37  Aligned_cols=88  Identities=19%  Similarity=0.217  Sum_probs=82.9

Q ss_pred             cCCCceEEEeCCCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCchhHH
Q psy16164         74 VHYRLLFQIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTEVVK  153 (214)
Q Consensus        74 ~~pd~~al~~~~~~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~~~~~  153 (214)
                      .+|+++|+++..+++.+||+||.++++++|++|.+.|+++||+|+++++|+++++++++||+++|++++|+++.++.  +
T Consensus        28 ~~p~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~--~  105 (534)
T PRK05852         28 RLPEAPALVVTADRIAISYRDLARLVDDLAGQLTRSGLLPGDRVALRMGSNAEFVVALLAASRADLVVVPLDPALPI--A  105 (534)
T ss_pred             hCCCCcEEEecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcHHHHHHHHHHHHcCcEEeecCCCCCc--H
Confidence            58999999886455689999999999999999999999999999999999999999999999999999999999999  9


Q ss_pred             HHHHHhhcCc
Q psy16164        154 ELSQHCVGGL  163 (214)
Q Consensus       154 ~l~~~l~~s~  163 (214)
                      ++.+.+.+++
T Consensus       106 ~l~~~l~~~~  115 (534)
T PRK05852        106 EQRVRSQAAG  115 (534)
T ss_pred             HHHHHHHhCC
Confidence            9999999776

>PRK13382 acyl-CoA synthetase; Provisional

Probab=99.49  E-value=1.7e-13  Score=123.44  Aligned_cols=86  Identities=21%  Similarity=0.161  Sum_probs=82.4

Q ss_pred             cCCCceEEEeCCCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCchhHH
Q psy16164         74 VHYRLLFQIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTEVVK  153 (214)
Q Consensus        74 ~~pd~~al~~~~~~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~~~~~  153 (214)
                      .+||++|+++.  ++.+||.||.++++++|++|.++|+++|++|+++++|+++|+++++||+++|++++|+++.++.  +
T Consensus        55 ~~p~~~a~~~~--~~~~Ty~el~~~~~~~A~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~--~  130 (537)
T PRK13382         55 RCPDRPGLIDE--LGTLTWRELDERSDALAAALQALPIGEPRVVGIMCRNHRGFVEALLAANRIGADILLLNTSFAG--P  130 (537)
T ss_pred             hCCCCeEEEeC--CCeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCcHHHHHHHHHHHHcCcEEEecCcccCH--H
Confidence            59999999985  6799999999999999999999999999999999999999999999999999999999999999  9


Q ss_pred             HHHHHhhcCc
Q psy16164        154 ELSQHCVGGL  163 (214)
Q Consensus       154 ~l~~~l~~s~  163 (214)
                      ++.+++++++
T Consensus       131 ~l~~~l~~~~  140 (537)
T PRK13382        131 ALAEVVTREG  140 (537)
T ss_pred             HHHHHHHhcC
Confidence            9999999777

>PRK07798 acyl-CoA synthetase; Validated

Probab=99.49  E-value=6e-13  Score=118.82  Aligned_cols=86  Identities=23%  Similarity=0.263  Sum_probs=82.5

Q ss_pred             cCCCceEEEeCCCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCchhHH
Q psy16164         74 VHYRLLFQIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTEVVK  153 (214)
Q Consensus        74 ~~pd~~al~~~~~~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~~~~~  153 (214)
                      .+||++|+.+.  ++.+||.||.++++++|..|.+.|+++||+|+++++|+++|+++++||+++|++++|+++.++.  +
T Consensus        15 ~~p~~~a~~~~--~~~~ty~el~~~~~~la~~L~~~g~~~~~~v~v~~~n~~~~~~~~~a~~~~G~~~v~l~~~~~~--~   90 (533)
T PRK07798         15 AVPDRVALVCG--DRRLTYAELEERANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGAFKARAVPVNVNYRYVE--D   90 (533)
T ss_pred             hCCCceEEEEC--CceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCeEEEecCcCCCH--H
Confidence            58999999986  7899999999999999999999999999999999999999999999999999999999999999  9


Q ss_pred             HHHHHhhcCc
Q psy16164        154 ELSQHCVGGL  163 (214)
Q Consensus       154 ~l~~~l~~s~  163 (214)
                      ++.+++++++
T Consensus        91 ~l~~~l~~~~  100 (533)
T PRK07798         91 ELRYLLDDSD  100 (533)
T ss_pred             HHHHHHhhcC
Confidence            9999999766

>PRK09274 peptide synthase; Provisional

Probab=99.48  E-value=2e-13  Score=123.02  Aligned_cols=88  Identities=17%  Similarity=0.121  Sum_probs=81.7

Q ss_pred             cCCCceEEEeCCCC--------eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecC
Q psy16164         74 VHYRLLFQIDAVTD--------ITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSIN  145 (214)
Q Consensus        74 ~~pd~~al~~~~~~--------~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~  145 (214)
                      .+|+++|+++...+        +++||+||.+++.++|.+|.+.|+++||+|+++++|+++|+++++||+++|++++|++
T Consensus        18 ~~p~~~a~~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~g~~~gd~V~~~~~n~~~~~~~~la~~~~G~~~v~l~   97 (552)
T PRK09274         18 ERPDQLAVAVPGGRGADGKLAYDELSFAELDARSDAIAHGLNAAGIGRGMRAVLMVTPSLEFFALTFALFKAGAVPVLVD   97 (552)
T ss_pred             hCCCcceEEeccCCCCccccccCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCcHHHHHHHHHHHHcCeEEEEcC
Confidence            58999999875322        2799999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCchhHHHHHHHhhcCc
Q psy16164        146 PQYTEVVKELSQHCVGGL  163 (214)
Q Consensus       146 ~~~~~~~~~l~~~l~~s~  163 (214)
                      |.++.  +++.+++.+++
T Consensus        98 ~~~~~--~~l~~~l~~~~  113 (552)
T PRK09274         98 PGMGI--KNLKQCLAEAQ  113 (552)
T ss_pred             CCccH--HHHHHHHHhcC
Confidence            99999  99999999776

>PRK13390 acyl-CoA synthetase; Provisional

Probab=99.48  E-value=2.7e-13  Score=120.76  Aligned_cols=88  Identities=26%  Similarity=0.246  Sum_probs=83.6

Q ss_pred             cCCCceEEEeCCCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCchhHH
Q psy16164         74 VHYRLLFQIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTEVVK  153 (214)
Q Consensus        74 ~~pd~~al~~~~~~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~~~~~  153 (214)
                      .+|+++|+.+.++++.+||+||.++++++|+.|.+.|+++||+|+++++|+++++++++||+++|++++|+++.+++  +
T Consensus         9 ~~p~~~a~~~~~~~~~lTy~el~~~~~~la~~L~~~gv~~gd~V~i~~~n~~~~~~~~la~~~~Ga~~~~l~~~~~~--~   86 (501)
T PRK13390          9 IAPDRPAVIVAETGEQVSYRQLDDDSAALARVLYDAGLRTGDVVALLSDNSPEALVVLWAALRSGLYITAINHHLTA--P   86 (501)
T ss_pred             hCCCCcEEEecCCCeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEeccccCCCH--H
Confidence            48999999876567899999999999999999999999999999999999999999999999999999999999999  9


Q ss_pred             HHHHHhhcCc
Q psy16164        154 ELSQHCVGGL  163 (214)
Q Consensus       154 ~l~~~l~~s~  163 (214)
                      ++.+++.+++
T Consensus        87 ~~~~~~~~~~   96 (501)
T PRK13390         87 EADYIVGDSG   96 (501)
T ss_pred             HHHHHHHhcC
Confidence            9999999776

>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed

Probab=99.48  E-value=4.5e-13  Score=120.80  Aligned_cols=88  Identities=24%  Similarity=0.272  Sum_probs=82.2

Q ss_pred             cCCCceEEEeCCC----CeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCc
Q psy16164         74 VHYRLLFQIDAVT----DITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYT  149 (214)
Q Consensus        74 ~~pd~~al~~~~~----~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~  149 (214)
                      .+|+++|+++...    .+.+||.||.++++++|.+|.+.|+++||+|+++++|+++|+++++||+++|++++|++|.++
T Consensus        36 ~~p~~~A~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~Val~~~n~~e~~~~~la~~~~G~~~vpl~~~~~  115 (547)
T PRK13295         36 SCPDKTAVTAVRLGTGAPRRFTYRELAALVDRVAVGLARLGVGRGDVVSCQLPNWWEFTVLYLACSRIGAVLNPLMPIFR  115 (547)
T ss_pred             HCCCceEEEecCCCccccceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHHHhcCcEEeccccccC
Confidence            5899999987532    278999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHhhcCc
Q psy16164        150 EVVKELSQHCVGGL  163 (214)
Q Consensus       150 ~~~~~l~~~l~~s~  163 (214)
                      .  +++.+++.+++
T Consensus       116 ~--~~l~~~l~~~~  127 (547)
T PRK13295        116 E--RELSFMLKHAE  127 (547)
T ss_pred             H--HHHHHHHHhcC
Confidence            9  99999999776

>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional

Probab=99.47  E-value=8.4e-13  Score=119.08  Aligned_cols=86  Identities=20%  Similarity=0.269  Sum_probs=82.3

Q ss_pred             cCCCceEEEeCCCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCchhHH
Q psy16164         74 VHYRLLFQIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTEVVK  153 (214)
Q Consensus        74 ~~pd~~al~~~~~~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~~~~~  153 (214)
                      .+||++|+++.  +..+||+||.+++.++|..|.+.|+++|++|+++++|+++|+++++||+++|++++|+++.++.  +
T Consensus        33 ~~p~~~a~~~~--~~~~Ty~el~~~v~~la~~L~~~gi~~g~~V~v~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~--~  108 (542)
T PRK06155         33 RYPDRPLLVFG--GTRWTYAEAARAAAAAAHALAAAGVKRGDRVALMCGNRIEFLDVFLGCAWLGAIAVPINTALRG--P  108 (542)
T ss_pred             HCCCCeEEEeC--CccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHHhCCEEEEeccccCH--H
Confidence            59999999986  6799999999999999999999999999999999999999999999999999999999999999  9


Q ss_pred             HHHHHhhcCc
Q psy16164        154 ELSQHCVGGL  163 (214)
Q Consensus       154 ~l~~~l~~s~  163 (214)
                      ++...+.+++
T Consensus       109 ~l~~~l~~~~  118 (542)
T PRK06155        109 QLEHILRNSG  118 (542)
T ss_pred             HHHHHHHhcC
Confidence            9999999776

>PRK06087 short chain acyl-CoA synthetase; Reviewed

Probab=99.47  E-value=4.7e-13  Score=120.50  Aligned_cols=87  Identities=20%  Similarity=0.263  Sum_probs=82.4

Q ss_pred             cCCCceEEEeCCCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCchhHH
Q psy16164         74 VHYRLLFQIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTEVVK  153 (214)
Q Consensus        74 ~~pd~~al~~~~~~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~~~~~  153 (214)
                      .+||++|+++. +++.+||+|+.+++.++|+.|.+.|+++||+|+++++|+++|+++++||+++|++++|+++.++.  +
T Consensus        35 ~~pd~~a~~~~-~~~~~Ty~~l~~~v~~la~~l~~~G~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~--~  111 (547)
T PRK06087         35 AMPDKIAVVDN-HGASYTYSALDHAASRLANWLLAKGIEPGDRVAFQLPGWCEFTIIYLACLKVGAVSVPLLPSWRE--A  111 (547)
T ss_pred             HCCCceEEEcC-CCCEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEeccchhcCH--H
Confidence            58999999875 45799999999999999999999999999999999999999999999999999999999999999  9


Q ss_pred             HHHHHhhcCc
Q psy16164        154 ELSQHCVGGL  163 (214)
Q Consensus       154 ~l~~~l~~s~  163 (214)
                      ++.+++++++
T Consensus       112 ~l~~~l~~~~  121 (547)
T PRK06087        112 ELVWVLNKCQ  121 (547)
T ss_pred             HHHHHHHhcC
Confidence            9999998766

>PLN02246 4-coumarate--CoA ligase

Probab=99.47  E-value=8.3e-13  Score=118.72  Aligned_cols=88  Identities=28%  Similarity=0.372  Sum_probs=82.9

Q ss_pred             cCCCceEEEeCCCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCchhHH
Q psy16164         74 VHYRLLFQIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTEVVK  153 (214)
Q Consensus        74 ~~pd~~al~~~~~~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~~~~~  153 (214)
                      .+|+++|+++...++++||.||.++++++|+.|.+.|+++||+|+++++|+++|+++++||+++|++++|++|.++.  +
T Consensus        35 ~~~~~~a~~~~~~~~~~ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~--~  112 (537)
T PLN02246         35 EFSDRPCLIDGATGRVYTYADVELLSRRVAAGLHKLGIRQGDVVMLLLPNCPEFVLAFLGASRRGAVTTTANPFYTP--A  112 (537)
T ss_pred             hCCCCeEEEecCCCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHHHHcCEEEecCCCCCCH--H
Confidence            58999999986556789999999999999999999999999999999999999999999999999999999999999  9


Q ss_pred             HHHHHhhcCc
Q psy16164        154 ELSQHCVGGL  163 (214)
Q Consensus       154 ~l~~~l~~s~  163 (214)
                      ++..+++.++
T Consensus       113 ~l~~~l~~~~  122 (537)
T PLN02246        113 EIAKQAKASG  122 (537)
T ss_pred             HHHHHHHhcC
Confidence            9999998665

>PLN02479 acetate-CoA ligase

Probab=99.46  E-value=5.3e-13  Score=120.93  Aligned_cols=86  Identities=20%  Similarity=0.227  Sum_probs=82.6

Q ss_pred             cCCCceEEEeCCCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCchhHH
Q psy16164         74 VHYRLLFQIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTEVVK  153 (214)
Q Consensus        74 ~~pd~~al~~~~~~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~~~~~  153 (214)
                      .+|+++|+.++  +..+||+||..+++++|.+|.+.|+++||+|+++++|+++|+++++||+++|++++|+++.++.  +
T Consensus        32 ~~p~~~a~~~~--~~~~ty~eL~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~v~v~l~~~~~~--~  107 (567)
T PLN02479         32 VHPTRKSVVHG--SVRYTWAQTYQRCRRLASALAKRSIGPGSTVAVIAPNIPAMYEAHFGVPMAGAVVNCVNIRLNA--P  107 (567)
T ss_pred             hCCCceEEEEC--CceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHhCCcEEEEeccccCH--H
Confidence            58999999985  6789999999999999999999999999999999999999999999999999999999999999  9


Q ss_pred             HHHHHhhcCc
Q psy16164        154 ELSQHCVGGL  163 (214)
Q Consensus       154 ~l~~~l~~s~  163 (214)
                      ++.+++.+++
T Consensus       108 ~l~~~l~~~~  117 (567)
T PLN02479        108 TIAFLLEHSK  117 (567)
T ss_pred             HHHHHHhhcC
Confidence            9999999877

>PRK03584 acetoacetyl-CoA synthetase; Provisional

Probab=99.46  E-value=3.8e-13  Score=123.94  Aligned_cols=88  Identities=19%  Similarity=0.118  Sum_probs=81.4

Q ss_pred             cCCCceEEEeCCC---CeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCch
Q psy16164         74 VHYRLLFQIDAVT---DITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTE  150 (214)
Q Consensus        74 ~~pd~~al~~~~~---~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~~  150 (214)
                      .+|+++|+++..+   .+++||+||.+++.++|+.|++.|+++||+|+++++|+++++++++||+++|++++|+++.+++
T Consensus        96 ~~~~~~Al~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~v~~~lA~~~~Gav~v~l~~~~~~  175 (655)
T PRK03584         96 RRDDRPAIIFRGEDGPRRELSWAELRRQVAALAAALRALGVGPGDRVAAYLPNIPETVVAMLATASLGAIWSSCSPDFGV  175 (655)
T ss_pred             CCCCCeEEEEECCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEeeCCCCCH
Confidence            4789999987532   2589999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHhhcCc
Q psy16164        151 VVKELSQHCVGGL  163 (214)
Q Consensus       151 ~~~~l~~~l~~s~  163 (214)
                        +++.+++.+++
T Consensus       176 --~~l~~~l~~~~  186 (655)
T PRK03584        176 --QGVLDRFGQIE  186 (655)
T ss_pred             --HHHHHHHHHcC
Confidence              99999999766

>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase

Probab=99.46  E-value=3.9e-13  Score=123.98  Aligned_cols=87  Identities=21%  Similarity=0.148  Sum_probs=80.3

Q ss_pred             CCCceEEEeCCC-C--eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCchh
Q psy16164         75 HYRLLFQIDAVT-D--ITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTEV  151 (214)
Q Consensus        75 ~pd~~al~~~~~-~--~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~~~  151 (214)
                      .++++|+++... +  +.+||+||..++.++|++|+++|+++||+|+++++|+++++++++||+++|++++|+++.+++ 
T Consensus        97 ~~~~~a~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~~n~~e~~~~~lA~~~~Gav~vp~~~~~~~-  175 (652)
T TIGR01217        97 AGTEPALLYVDETHEPAPVTWAELRRQVASLAAALRALGVRPGDRVSGYLPNIPQAVVAMLATASVGAIWSSCSPDFGA-  175 (652)
T ss_pred             CCCCeEEEEECCCCCeeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCeEEEecCCCCCH-
Confidence            468889876432 2  589999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             HHHHHHHhhcCc
Q psy16164        152 VKELSQHCVGGL  163 (214)
Q Consensus       152 ~~~l~~~l~~s~  163 (214)
                       +++.+++++++
T Consensus       176 -~~l~~~l~~~~  186 (652)
T TIGR01217       176 -RGVLDRFQQIE  186 (652)
T ss_pred             -HHHHHHHHhcC
Confidence             99999999776

This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.

>PRK12583 acyl-CoA synthetase; Provisional

Probab=99.46  E-value=1.1e-12  Score=118.14  Aligned_cols=88  Identities=22%  Similarity=0.235  Sum_probs=83.7

Q ss_pred             cCCCceEEEeCCCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCchhHH
Q psy16164         74 VHYRLLFQIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTEVVK  153 (214)
Q Consensus        74 ~~pd~~al~~~~~~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~~~~~  153 (214)
                      .+|+++|+++.+.++.+||.||.+++.++|..|.+.|+++|++|+++++|+++|+++++||+++|++++|+++.++.  +
T Consensus        30 ~~p~~~a~~~~~~~~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~~a~~~~G~~~v~l~~~~~~--~  107 (558)
T PRK12583         30 RFPDREALVVRHQALRYTWRQLADAVDRLARGLLALGVQPGDRVGIWAPNCAEWLLTQFATARIGAILVNINPAYRA--S  107 (558)
T ss_pred             HCCCCeEEEecCCCcEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHHHhhCCEEEecCCCCCH--H
Confidence            58999999886567899999999999999999999999999999999999999999999999999999999999999  9


Q ss_pred             HHHHHhhcCc
Q psy16164        154 ELSQHCVGGL  163 (214)
Q Consensus       154 ~l~~~l~~s~  163 (214)
                      ++.+++.+++
T Consensus       108 ~~~~~l~~~~  117 (558)
T PRK12583        108 ELEYALGQSG  117 (558)
T ss_pred             HHHHHHHhcC
Confidence            9999999776

>PRK05605 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.46  E-value=6.5e-13  Score=120.33  Aligned_cols=86  Identities=27%  Similarity=0.162  Sum_probs=82.3

Q ss_pred             cCCCceEEEeCCCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCchhHH
Q psy16164         74 VHYRLLFQIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTEVVK  153 (214)
Q Consensus        74 ~~pd~~al~~~~~~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~~~~~  153 (214)
                      .+|+++|+.+.  ++.+||.||.+.+.++|+.|.+.|+++||+|+++++|+++|+++++||+++|++++|++|.++.  +
T Consensus        44 ~~p~~~a~~~~--~~~~Ty~ql~~~~~~~A~~L~~~gi~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~--~  119 (573)
T PRK05605         44 RFGDRPALDFF--GATTTYAELGKQVRRAAAGLRALGVRPGDRVAIVLPNCPQHIVAFYAVLRLGAVVVEHNPLYTA--H  119 (573)
T ss_pred             HCCCCeEEEeC--CCcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEEeecCcCCCH--H
Confidence            58999999885  6789999999999999999999999999999999999999999999999999999999999999  9


Q ss_pred             HHHHHhhcCc
Q psy16164        154 ELSQHCVGGL  163 (214)
Q Consensus       154 ~l~~~l~~s~  163 (214)
                      ++.+++.+++
T Consensus       120 ~l~~~l~~~~  129 (573)
T PRK05605        120 ELEHPFEDHG  129 (573)
T ss_pred             HHHHHHhccC
Confidence            9999999766

>PRK05677 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.46  E-value=4.2e-13  Score=121.45  Aligned_cols=86  Identities=26%  Similarity=0.320  Sum_probs=81.7

Q ss_pred             cCCCceEEEeCCCCeeeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCchhH
Q psy16164         74 VHYRLLFQIDAVTDITYTYDDILQKSLQLADALQK-RGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTEVV  152 (214)
Q Consensus        74 ~~pd~~al~~~~~~~~~Ty~el~~~~~~la~~L~~-~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~~~~  152 (214)
                      .+|+++|+++.  ++.+||+||.+++.++|+.|.+ .|+++||+|+++++|+++|+++++||+++|++++|++|.++.  
T Consensus        36 ~~p~~~al~~~--~~~~Ty~el~~~~~~la~~L~~~~gi~~gd~Vai~~~n~~~~~~~~la~~~~Ga~~v~l~~~~~~--  111 (562)
T PRK05677         36 RFADKPAFSNL--GKTLTYGELYKLSGAFAAWLQQHTDLKPGDRIAVQLPNVLQYPVAVFGAMRAGLIVVNTNPLYTA--  111 (562)
T ss_pred             hCCCCeeEEEC--CceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEeecCCCCCH--
Confidence            48999999985  6799999999999999999997 699999999999999999999999999999999999999999  


Q ss_pred             HHHHHHhhcCc
Q psy16164        153 KELSQHCVGGL  163 (214)
Q Consensus       153 ~~l~~~l~~s~  163 (214)
                      +++.+++.+++
T Consensus       112 ~~l~~~l~~~~  122 (562)
T PRK05677        112 REMEHQFNDSG  122 (562)
T ss_pred             HHHHHHHhccC
Confidence            99999999776

>PRK13388 acyl-CoA synthetase; Provisional

Probab=99.46  E-value=1e-12  Score=118.40  Aligned_cols=85  Identities=19%  Similarity=0.121  Sum_probs=81.2

Q ss_pred             CCCceEEEeCCCCeeeeHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCchhHH
Q psy16164         75 HYRLLFQIDAVTDITYTYDDILQKSLQLADALQKRGY-RRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTEVVK  153 (214)
Q Consensus        75 ~pd~~al~~~~~~~~~Ty~el~~~~~~la~~L~~~Gl-~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~~~~~  153 (214)
                      .|+++|+++.  +..+||.||.+++.++|..|.+.|+ .+||+|+++++|+++|+++++||+++|++++|++|.++.  +
T Consensus        14 ~p~~~Al~~~--~~~lTy~el~~~~~~la~~L~~~g~~~~~~~V~i~~~n~~~~v~~~lA~~~~Ga~~v~l~p~~~~--~   89 (540)
T PRK13388         14 GDDTIAVRYG--DRTWTWREVLAEAAARAAALIALADPDRPLHVGVLLGNTPEMLFWLAAAALGGYVLVGLNTTRRG--A   89 (540)
T ss_pred             cCCceEEEEC--CceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCcHHHHHHHHHHhCCCEEEEecccCCh--H
Confidence            6999999885  7799999999999999999999999 799999999999999999999999999999999999999  9


Q ss_pred             HHHHHhhcCc
Q psy16164        154 ELSQHCVGGL  163 (214)
Q Consensus       154 ~l~~~l~~s~  163 (214)
                      ++.+++.+++
T Consensus        90 ~l~~~l~~~~   99 (540)
T PRK13388         90 ALAADIRRAD   99 (540)
T ss_pred             HHHHHHHhcC
Confidence            9999999766

>PLN02330 4-coumarate--CoA ligase-like 1

Probab=99.45  E-value=6.8e-13  Score=119.58  Aligned_cols=88  Identities=23%  Similarity=0.357  Sum_probs=83.3

Q ss_pred             cCCCceEEEeCCCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCchhHH
Q psy16164         74 VHYRLLFQIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTEVVK  153 (214)
Q Consensus        74 ~~pd~~al~~~~~~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~~~~~  153 (214)
                      .+|+++|+++..+++.+||.||.+++.++|..|.+.|+++|++|+++++|+++++++++||+++|++++|+++.++.  +
T Consensus        40 ~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~--~  117 (546)
T PLN02330         40 LYADKVAFVEAVTGKAVTYGEVVRDTRRFAKALRSLGLRKGQVVVVVLPNVAEYGIVALGIMAAGGVFSGANPTALE--S  117 (546)
T ss_pred             cCCCccEEEecCCCCcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHHhCcEeccCCccCCH--H
Confidence            58999999876557899999999999999999999999999999999999999999999999999999999999999  9


Q ss_pred             HHHHHhhcCc
Q psy16164        154 ELSQHCVGGL  163 (214)
Q Consensus       154 ~l~~~l~~s~  163 (214)
                      ++.+++.+++
T Consensus       118 ~l~~~l~~~~  127 (546)
T PLN02330        118 EIKKQAEAAG  127 (546)
T ss_pred             HHHHHHHhcC
Confidence            9999999766

>TIGR03089 conserved hypothetical protein TIGR03089

Probab=99.45  E-value=4.3e-13  Score=108.46  Aligned_cols=74  Identities=14%  Similarity=0.007  Sum_probs=66.9

Q ss_pred             ccCCCceEEEeC-C---CCeeeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCC
Q psy16164         73 VVHYRLLFQIDA-V---TDITYTYDDILQKSLQLADALQK-RGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINP  146 (214)
Q Consensus        73 ~~~pd~~al~~~-~---~~~~~Ty~el~~~~~~la~~L~~-~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~  146 (214)
                      +.+|+++|+++. +   ++.++||+|+.+++.++|+.|++ +|+++||+|+|+++|+++++++++|++++|++++|+|.
T Consensus         7 ~~~p~~~al~~~~~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~Gv~~GdrV~i~~~n~~~~~~~~~a~~~~G~v~vp~n~   85 (227)
T TIGR03089         7 AADPASPRLTFYDDATGERVELSAATLANWVAKTANLLQDELDAEPGSRVALDLPAHWQTAVWLLAAWSTGVEVVLAGD   85 (227)
T ss_pred             hhCCCCcEEEEEcCCCCeeEEEEHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEeCCC
Confidence            358999999753 2   23479999999999999999998 79999999999999999999999999999999999985

This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501.

>PLN02574 4-coumarate--CoA ligase-like

Probab=99.45  E-value=1.1e-12  Score=118.81  Aligned_cols=89  Identities=26%  Similarity=0.364  Sum_probs=83.5

Q ss_pred             ccCCCceEEEeCCCCeeeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCchh
Q psy16164         73 VVHYRLLFQIDAVTDITYTYDDILQKSLQLADALQK-RGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTEV  151 (214)
Q Consensus        73 ~~~pd~~al~~~~~~~~~Ty~el~~~~~~la~~L~~-~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~~~  151 (214)
                      ..+|+++|+++..++.++||+||.+++.++|++|.+ .|+++||+|+++++|+++|+++++||+++|++++|++|.++. 
T Consensus        50 ~~~~~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~~G~~~gd~V~i~~~n~~~~~~~~la~~~~G~v~v~l~p~~~~-  128 (560)
T PLN02574         50 HNHNGDTALIDSSTGFSISYSELQPLVKSMAAGLYHVMGVRQGDVVLLLLPNSVYFPVIFLAVLSLGGIVTTMNPSSSL-  128 (560)
T ss_pred             cccCCCCEEEECCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCcchHHHHHHHHHHhCeEEeCcCcccCH-
Confidence            468999999987556689999999999999999998 999999999999999999999999999999999999999999 


Q ss_pred             HHHHHHHhhcCc
Q psy16164        152 VKELSQHCVGGL  163 (214)
Q Consensus       152 ~~~l~~~l~~s~  163 (214)
                       +++.+++.+++
T Consensus       129 -~~l~~~l~~~~  139 (560)
T PLN02574        129 -GEIKKRVVDCS  139 (560)
T ss_pred             -HHHHHHHHhcC
Confidence             99999999776

>PRK08315 AMP-binding domain protein; Validated

Probab=99.45  E-value=1.4e-12  Score=117.50  Aligned_cols=88  Identities=22%  Similarity=0.230  Sum_probs=83.0

Q ss_pred             cCCCceEEEeCCCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCchhHH
Q psy16164         74 VHYRLLFQIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTEVVK  153 (214)
Q Consensus        74 ~~pd~~al~~~~~~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~~~~~  153 (214)
                      .+|+++|+++.+.+..+||+||.+++.++|..|.+.|+++|++|+++++|+++++++++||+++|++++|++|.++.  .
T Consensus        28 ~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~--~  105 (559)
T PRK08315         28 RYPDREALVYRDQGLRWTYREFNEEVDALAKGLLALGIEKGDRVGIWAPNVPEWVLTQFATAKIGAILVTINPAYRL--S  105 (559)
T ss_pred             HCCCCeEEEEcCCCeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHHhCeEEEecCccCCH--H
Confidence            58999999886567789999999999999999999999999999999999999999999999999999999999999  9


Q ss_pred             HHHHHhhcCc
Q psy16164        154 ELSQHCVGGL  163 (214)
Q Consensus       154 ~l~~~l~~s~  163 (214)
                      ++..++..++
T Consensus       106 ~~~~~l~~~~  115 (559)
T PRK08315        106 ELEYALNQSG  115 (559)
T ss_pred             HHHHHHHhcC
Confidence            9999888666

>PTZ00297 pantothenate kinase; Provisional

Probab=99.45  E-value=1.6e-12  Score=127.49  Aligned_cols=111  Identities=18%  Similarity=0.190  Sum_probs=88.2

Q ss_pred             cCCCceEEEeC---CCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCch
Q psy16164         74 VHYRLLFQIDA---VTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTE  150 (214)
Q Consensus        74 ~~pd~~al~~~---~~~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~~  150 (214)
                      .+|+++|+...   .+.+++||+|+.+++.++|.+|.++|+++||+|+|+++|+++|+++++||+.+|++.||+++  +.
T Consensus       439 ~~pd~~al~~~~~~g~~~~lTY~El~~~V~~lAa~L~~lGV~~GDrVaIls~N~~Ewvia~lA~~~~GaV~VPly~--t~  516 (1452)
T PTZ00297        439 RHSTFRCLGQTSESGESEWLTYGTVDARARELGSGLLALGVRPGDVIGVDCEASRNIVILEVACALYGFTTLPLVG--KG  516 (1452)
T ss_pred             HCCCCeEEEEeccCCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEeCCC--CH
Confidence            58999998642   12368999999999999999999999999999999999999999999999999999999975  45


Q ss_pred             hHHHHHHHhhcCc--eeecchHHHhhhhhhhccccccccc
Q psy16164        151 VVKELSQHCVGGL--ELQQKRVEIGALAEETNSLLKKNVF  188 (214)
Q Consensus       151 ~~~~l~~~l~~s~--~~~~~~~~~~~~~~~~~~~l~~ii~  188 (214)
                        .++.|++++++  ++......+..+.+...+.++++|.
T Consensus       517 --~eL~yIL~~S~akvVfv~~~~l~kl~~i~~~~Lr~IIv  554 (1452)
T PTZ00297        517 --STMRTLIDEHKIKVVFADRNSVAAILTCRSRKLETVVY  554 (1452)
T ss_pred             --HHHHHHHHhcCCcEEEEchhHHHHHHhhcccCCcEEEE
Confidence              78999999777  4444444444443322224666553

>PRK13383 acyl-CoA synthetase; Provisional

Probab=99.44  E-value=5.6e-13  Score=119.27  Aligned_cols=86  Identities=21%  Similarity=0.277  Sum_probs=81.9

Q ss_pred             cCCCceEEEeCCCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCchhHH
Q psy16164         74 VHYRLLFQIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTEVVK  153 (214)
Q Consensus        74 ~~pd~~al~~~~~~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~~~~~  153 (214)
                      .+||++|+++.  +..+||.|+.+++.++|++|.+.|+++||+|+++++|+++++++++||+.+|++++|+++.++.  +
T Consensus        47 ~~p~~~a~~~~--~~~lTy~el~~~~~~la~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~~~G~v~vpl~~~~~~--~  122 (516)
T PRK13383         47 RWPGRTAIIDD--DGALSYRELQRATESLARRLTRDGVAPGRAVGVMCRNGRGFVTAVFAVGLLGADVVPISTEFRS--D  122 (516)
T ss_pred             HCCCCcEEEeC--CCcEeHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHhCeEEEEcCccCCH--H
Confidence            58999999885  5689999999999999999999999999999999999999999999999999999999999999  9


Q ss_pred             HHHHHhhcCc
Q psy16164        154 ELSQHCVGGL  163 (214)
Q Consensus       154 ~l~~~l~~s~  163 (214)
                      ++.+++++++
T Consensus       123 ~l~~~l~~~~  132 (516)
T PRK13383        123 ALAAALRAHH  132 (516)
T ss_pred             HHHHHHhcCC
Confidence            9999998776

>PRK04319 acetyl-CoA synthetase; Provisional

Probab=99.44  E-value=8.8e-13  Score=119.51  Aligned_cols=88  Identities=17%  Similarity=0.159  Sum_probs=81.7

Q ss_pred             cCCCceEEEeCC--CCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCchh
Q psy16164         74 VHYRLLFQIDAV--TDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTEV  151 (214)
Q Consensus        74 ~~pd~~al~~~~--~~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~~~  151 (214)
                      .+|+++|+.+..  .++++||+||.+++.++|.+|.+.|+++||+|+++++|+++|+++++||+++|++++|+++.+++ 
T Consensus        56 ~~~~~~a~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~la~~~~G~v~vpl~~~~~~-  134 (570)
T PRK04319         56 GRKDKVALRYLDASRKEKYTYKELKELSNKFANVLKELGVEKGDRVFIFMPRIPELYFALLGALKNGAIVGPLFEAFME-  134 (570)
T ss_pred             CCCCceEEEEECCCCceeecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEcccccccCH-
Confidence            368999998642  24689999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             HHHHHHHhhcCc
Q psy16164        152 VKELSQHCVGGL  163 (214)
Q Consensus       152 ~~~l~~~l~~s~  163 (214)
                       +++.+++.+++
T Consensus       135 -~~l~~~l~~~~  145 (570)
T PRK04319        135 -EAVRDRLEDSE  145 (570)
T ss_pred             -HHHHHHHHccC
Confidence             99999999776

>PRK07529 AMP-binding domain protein; Validated

Probab=99.44  E-value=6e-13  Score=122.25  Aligned_cols=87  Identities=18%  Similarity=0.198  Sum_probs=80.1

Q ss_pred             cCCCceEEEeCC------CCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCC
Q psy16164         74 VHYRLLFQIDAV------TDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQ  147 (214)
Q Consensus        74 ~~pd~~al~~~~------~~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~  147 (214)
                      .+|+++|+++..      .++++||+||.+++.++|+.|+++|+++||+|+++++|+++++++++||+++| +++|+|+.
T Consensus        37 ~~p~~~Al~~~~~~~~~~~~~~~Ty~eL~~~v~~~A~~L~~~Gi~~gd~V~i~~~n~~e~~~~~lA~~~~G-i~~pi~~~  115 (632)
T PRK07529         37 RHPDAPALSFLLDADPLDRPETWTYAELLADVTRTANLLHSLGVGPGDVVAFLLPNLPETHFALWGGEAAG-IANPINPL  115 (632)
T ss_pred             HCCCCceEEeecccCCCCCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhC-EEEeCCCc
Confidence            499999997631      35689999999999999999999999999999999999999999999999999 67999999


Q ss_pred             CchhHHHHHHHhhcCc
Q psy16164        148 YTEVVKELSQHCVGGL  163 (214)
Q Consensus       148 ~~~~~~~l~~~l~~s~  163 (214)
                      +++  +++.+++++++
T Consensus       116 ~~~--~~i~~~l~~~~  129 (632)
T PRK07529        116 LEP--EQIAELLRAAG  129 (632)
T ss_pred             CCH--HHHHHHHHhcC
Confidence            999  99999999776

>PRK06060 acyl-CoA synthetase; Validated

Probab=99.44  E-value=5.8e-13  Score=123.75  Aligned_cols=84  Identities=21%  Similarity=0.254  Sum_probs=80.1

Q ss_pred             CCCceEEEeCCCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCchhHHH
Q psy16164         75 HYRLLFQIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTEVVKE  154 (214)
Q Consensus        75 ~pd~~al~~~~~~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~~~~~~  154 (214)
                      +||++|+++.   ..+||+||.++++++|+.|.+.|+++|++|+++++|+++|+++++||+++|++++|++|.++.  ++
T Consensus        19 ~pd~~a~~~~---~~~Ty~eL~~~~~~lA~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~aG~~~vpi~p~~~~--~~   93 (705)
T PRK06060         19 WYDRPAFYAA---DVVTHGQIHDGAARLGEVLRNRGLSSGDRVLLCLPDSPDLVQLLLACLARGVMAFLANPELHR--DD   93 (705)
T ss_pred             CCCceEEEec---CceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCcEEEecCCCCCH--HH
Confidence            7999999874   479999999999999999999999999999999999999999999999999999999999999  99


Q ss_pred             HHHHhhcCc
Q psy16164        155 LSQHCVGGL  163 (214)
Q Consensus       155 l~~~l~~s~  163 (214)
                      +.+++++++
T Consensus        94 l~~~l~~~~  102 (705)
T PRK06060         94 HALAARNTE  102 (705)
T ss_pred             HHHHHhcCC
Confidence            999998776

>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated

Probab=99.44  E-value=1.9e-12  Score=115.61  Aligned_cols=88  Identities=17%  Similarity=0.156  Sum_probs=82.1

Q ss_pred             cCCCceEEEeCC---CCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCch
Q psy16164         74 VHYRLLFQIDAV---TDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTE  150 (214)
Q Consensus        74 ~~pd~~al~~~~---~~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~~  150 (214)
                      .+|+++|+++.+   +.+.+||.||.++++++|.+|.++|+++||+|+++++|+++|+++++||+++|++++|+++.++.
T Consensus        19 ~~p~~~a~~~~~~~~~~~~~ty~~l~~~v~~la~~L~~~g~~~~~~v~i~~~n~~~~~~~~la~~~~G~~~v~l~~~~~~   98 (517)
T PRK08008         19 VYGHKTALIFESSGGVVRRYSYLELNEEINRTANLFYSLGIRKGDKVALHLDNCPEFIFCWFGLAKIGAIMVPINARLLR   98 (517)
T ss_pred             HCCCceEEEcccCCCccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEEcCcccCH
Confidence            599999998753   13689999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHhhcCc
Q psy16164        151 VVKELSQHCVGGL  163 (214)
Q Consensus       151 ~~~~l~~~l~~s~  163 (214)
                        +++.+.+.+++
T Consensus        99 --~~l~~~l~~~~  109 (517)
T PRK08008         99 --EESAWILQNSQ  109 (517)
T ss_pred             --HHHHHHHHhcC
Confidence              99999999777

>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase

Probab=99.44  E-value=6.1e-13  Score=131.68  Aligned_cols=88  Identities=26%  Similarity=0.312  Sum_probs=81.9

Q ss_pred             cCCCceEEEeCC-------CCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCC
Q psy16164         74 VHYRLLFQIDAV-------TDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINP  146 (214)
Q Consensus        74 ~~pd~~al~~~~-------~~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~  146 (214)
                      .+||++|+++..       .++++||+||.+++.++|.+|.+.|+++|++|+++++|+++|+++++||+++|++++|++|
T Consensus       248 ~~pd~~A~~~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~~~~~i~~~lA~l~~G~~~vpldp  327 (1389)
T TIGR03443       248 KHPDRTCVVETPSFLDPSSKTRSFTYKQINEASNILAHYLLKTGIKRGDVVMIYAYRGVDLVVAVMGVLKAGATFSVIDP  327 (1389)
T ss_pred             hCCCCeEEEeccccccccCCCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEecCCHHHHHHHHHHHhhCcEEeccCC
Confidence            499999998631       3568999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCchhHHHHHHHhhcCc
Q psy16164        147 QYTEVVKELSQHCVGGL  163 (214)
Q Consensus       147 ~~~~~~~~l~~~l~~s~  163 (214)
                      .+++  +++.+++.+++
T Consensus       328 ~~p~--~~~~~~l~~~~  342 (1389)
T TIGR03443       328 AYPP--ARQTIYLSVAK  342 (1389)
T ss_pred             CCcH--HHHHHHHHhcC
Confidence            9999  99999998776

Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.

>PRK07868 acyl-CoA synthetase; Validated

Probab=99.43  E-value=1.8e-12  Score=124.67  Aligned_cols=88  Identities=24%  Similarity=0.235  Sum_probs=79.6

Q ss_pred             cCCCceEEEeCCCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCchhHH
Q psy16164         74 VHYRLLFQIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTEVVK  153 (214)
Q Consensus        74 ~~pd~~al~~~~~~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~~~~~  153 (214)
                      .+||++|+++.  ++.+||+||.++++++|++|.+.|+++||+|+|+++|+++|+++++||+++|++++|+||.     .
T Consensus       459 ~~pd~~Al~~~--~~~lTY~eL~~ra~rlA~~L~~~Gv~~Gd~VaI~~~n~~e~v~a~lA~~~aGav~vpl~p~-----~  531 (994)
T PRK07868        459 DAPKGEFLLFD--GRVHTYEAVNRRINNVVRGLIAVGVRQGDRVGVLMETRPSALVAIAALSRLGAVAVLMPPD-----T  531 (994)
T ss_pred             HCCCCeEEEeC--CceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCEEEEeCCc-----h
Confidence            59999999985  6799999999999999999999999999999999999999999999999999999999983     6


Q ss_pred             HHHHHhhcCc--eeecc
Q psy16164        154 ELSQHCVGGL--ELQQK  168 (214)
Q Consensus       154 ~l~~~l~~s~--~~~~~  168 (214)
                      ++.+++++++  .+.+.
T Consensus       532 ~l~~il~~s~~~~li~~  548 (994)
T PRK07868        532 DLAAAVRLGGVTEIITD  548 (994)
T ss_pred             hHHHHHhccCCeEEEEC
Confidence            7788888766  44443

>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=99.43  E-value=8.1e-13  Score=116.90  Aligned_cols=86  Identities=17%  Similarity=0.196  Sum_probs=82.1

Q ss_pred             cCCCceEEEeCCCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCchhHH
Q psy16164         74 VHYRLLFQIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTEVVK  153 (214)
Q Consensus        74 ~~pd~~al~~~~~~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~~~~~  153 (214)
                      .+||++|+++.  ++.+||.|+.+++.++|+.|.+.|+++||+|+++++|+++++++++||+++|++++|+++.++.  +
T Consensus        14 ~~p~~~a~~~~--~~~~Ty~el~~~~~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~i~~~~~~--~   89 (483)
T PRK03640         14 LTPDRTAIEFE--EKKVTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHALQQLGAVAVLLNTRLSR--E   89 (483)
T ss_pred             hCCCceEEEeC--CeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhCCcEEEecCcCCCH--H
Confidence            58999999986  6899999999999999999999999999999999999999999999999999999999999999  9


Q ss_pred             HHHHHhhcCc
Q psy16164        154 ELSQHCVGGL  163 (214)
Q Consensus       154 ~l~~~l~~s~  163 (214)
                      ++.+.+.+++
T Consensus        90 ~~~~~~~~~~   99 (483)
T PRK03640         90 ELLWQLDDAE   99 (483)
T ss_pred             HHHHHHHhCC
Confidence            9999998766

>PRK06018 putative acyl-CoA synthetase; Provisional

Probab=99.43  E-value=1.6e-12  Score=117.05  Aligned_cols=88  Identities=18%  Similarity=0.209  Sum_probs=81.5

Q ss_pred             cCCCceEEEeCCC--CeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCchh
Q psy16164         74 VHYRLLFQIDAVT--DITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTEV  151 (214)
Q Consensus        74 ~~pd~~al~~~~~--~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~~~  151 (214)
                      .+||+++++....  .+++||+||.++++++|.+|.+.|+++||+|+++++|+++++++++||+++|++++|+++.++. 
T Consensus        22 ~~~~~~~~~~~~~~~~~~~Ty~el~~~v~~la~~L~~~g~~~gd~v~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~-  100 (542)
T PRK06018         22 IHGNREVVTRSVEGPIVRTTYAQIHDRALKVSQALDRDGIKLGDRVATIAWNTWRHLEAWYGIMGIGAICHTVNPRLFP-  100 (542)
T ss_pred             hCCCceEEEeeccCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHHHhcCeEeeccccccCH-
Confidence            5899999985322  3689999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             HHHHHHHhhcCc
Q psy16164        152 VKELSQHCVGGL  163 (214)
Q Consensus       152 ~~~l~~~l~~s~  163 (214)
                       +++.++++.++
T Consensus       101 -~~l~~~l~~~~  111 (542)
T PRK06018        101 -EQIAWIINHAE  111 (542)
T ss_pred             -HHHHHHHhccC
Confidence             99999998766

>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

Probab=99.42  E-value=1.1e-12  Score=117.29  Aligned_cols=86  Identities=20%  Similarity=0.219  Sum_probs=79.0

Q ss_pred             CCCceEEEeCCC---CeeeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCch
Q psy16164         75 HYRLLFQIDAVT---DITYTYDDILQKSLQLADALQK-RGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTE  150 (214)
Q Consensus        75 ~pd~~al~~~~~---~~~~Ty~el~~~~~~la~~L~~-~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~~  150 (214)
                      .+|+.|+++..+   .+.+||+||.+.+.++|+.|++ .|+ +||+|+|++||.+|.++++|||+++|+|.+|+++.+++
T Consensus        23 ~~~~~aii~~~e~~~~~~~Ty~~L~~~v~r~A~~L~~~~gv-kGDrV~iymp~~pe~~~a~LA~~riGAI~~~vf~~f~~  101 (528)
T COG0365          23 RPDDTAIIFDGEDGLFRELTYGDLRREVARLANALKDLGGV-KGDRVAIYMPNSPEAVIALLATARIGAIPAVVSPGLSA  101 (528)
T ss_pred             CCCceEEEEEcCCCCceEEEHHHHHHHHHHHHHHHHHhCCC-CCCEEEEEcCCCHHHHHHHHHHHHcCCEEeecccCCCH
Confidence            478899887643   2689999999999999999986 578 99999999999999999999999999999999999999


Q ss_pred             hHHHHHHHhhcCc
Q psy16164        151 VVKELSQHCVGGL  163 (214)
Q Consensus       151 ~~~~l~~~l~~s~  163 (214)
                        +++.+++.+++
T Consensus       102 --~al~~Ri~d~~  112 (528)
T COG0365         102 --EAVADRIADLG  112 (528)
T ss_pred             --HHHHHHHHccC
Confidence              99999999877

>TIGR03205 pimA dicarboxylate--CoA ligase PimA

Probab=99.42  E-value=1.9e-12  Score=116.56  Aligned_cols=86  Identities=22%  Similarity=0.167  Sum_probs=82.2

Q ss_pred             cCCCceEEEeCCCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCchhHH
Q psy16164         74 VHYRLLFQIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTEVVK  153 (214)
Q Consensus        74 ~~pd~~al~~~~~~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~~~~~  153 (214)
                      .+|+++|+.+.  ++.+||.||.++++++|.+|.+.|+.+|++|+++++|+++++++++||+++|++++|++|.++.  .
T Consensus        33 ~~p~~~a~~~~--~~~~ty~el~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~--~  108 (541)
T TIGR03205        33 DYGPRPALEFR--DRPITYTELEAMAETAAAALLRAGYGKDASVALYLGNTPDHPINFFGALKAGARVVHLSPLDGE--R  108 (541)
T ss_pred             HcCCCceEEEC--CcEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHhcCeEEEecCCCCCH--H
Confidence            58999999885  6799999999999999999999999999999999999999999999999999999999999999  9


Q ss_pred             HHHHHhhcCc
Q psy16164        154 ELSQHCVGGL  163 (214)
Q Consensus       154 ~l~~~l~~s~  163 (214)
                      ++.+++++++
T Consensus       109 ~l~~~i~~~~  118 (541)
T TIGR03205       109 ALSHKLSDSG  118 (541)
T ss_pred             HHHHHHhhcC
Confidence            9999999777

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids.

>PRK08314 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.42  E-value=2.9e-12  Score=115.20  Aligned_cols=86  Identities=22%  Similarity=0.247  Sum_probs=82.0

Q ss_pred             cCCCceEEEeCCCCeeeeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCchhH
Q psy16164         74 VHYRLLFQIDAVTDITYTYDDILQKSLQLADALQKR-GYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTEVV  152 (214)
Q Consensus        74 ~~pd~~al~~~~~~~~~Ty~el~~~~~~la~~L~~~-Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~~~~  152 (214)
                      .+|+++|+++.  ++.+||+||.+++.++|..|.+. |+++|++|+++++|+++|+++++||+++|++++|++|.++.  
T Consensus        22 ~~~~~~a~~~~--~~~~Ty~~l~~~v~~~a~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~--   97 (546)
T PRK08314         22 RYPDKTAIVFY--GRAISYRELLEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIAYYAILRANAVVVPVNPMNRE--   97 (546)
T ss_pred             HcCCCcceeec--CceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCChHHHHHHHHHHHcCcEEeecCcCcCH--
Confidence            58999999986  67999999999999999999998 99999999999999999999999999999999999999999  


Q ss_pred             HHHHHHhhcCc
Q psy16164        153 KELSQHCVGGL  163 (214)
Q Consensus       153 ~~l~~~l~~s~  163 (214)
                      +++...+++++
T Consensus        98 ~~l~~~l~~~~  108 (546)
T PRK08314         98 EELAHYVTDSG  108 (546)
T ss_pred             HHHHHHHHhCC
Confidence            99999999776

>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated

Probab=99.42  E-value=1.2e-12  Score=118.05  Aligned_cols=84  Identities=14%  Similarity=0.006  Sum_probs=77.9

Q ss_pred             cCCCceEEEeCCCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCchhHH
Q psy16164         74 VHYRLLFQIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTEVVK  153 (214)
Q Consensus        74 ~~pd~~al~~~~~~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~~~~~  153 (214)
                      .+|+++|+++. .++++||+||.++++++|..|.+   .+||+|+++++|+++|+++++||+++|++++|+|+.++.  +
T Consensus        31 ~~p~~~a~~~~-~~~~~Ty~el~~~~~~lA~~L~~---~~gd~Val~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~--~  104 (539)
T PRK06334         31 EMTTATVCWDE-QLGKLSYNQVRKAVIALATKVSK---YPDQHIGIMMPASAGAYIAYFATLLSGKIPVMINWSQGL--R  104 (539)
T ss_pred             hCCCceEEEeC-CCCcccHHHHHHHHHHHHHHHhh---ccCCeEEEEcCCchHHHHHHHHHHhcCCeeEecCcccch--H
Confidence            58999999875 34689999999999999999986   389999999999999999999999999999999999999  9


Q ss_pred             HHHHHhhcCc
Q psy16164        154 ELSQHCVGGL  163 (214)
Q Consensus       154 ~l~~~l~~s~  163 (214)
                      ++.+++++++
T Consensus       105 ~l~~~l~~~~  114 (539)
T PRK06334        105 EVTACANLVG  114 (539)
T ss_pred             HHHHHHHHcC
Confidence            9999999776

>PRK06164 acyl-CoA synthetase; Validated

Probab=99.41  E-value=1.9e-12  Score=116.37  Aligned_cols=86  Identities=28%  Similarity=0.368  Sum_probs=81.9

Q ss_pred             cCCCceEEEeCCCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCchhHH
Q psy16164         74 VHYRLLFQIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTEVVK  153 (214)
Q Consensus        74 ~~pd~~al~~~~~~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~~~~~  153 (214)
                      .+|+++|+++.  ++.+||.||.+++.++|..|.+.|+++||+|+++++|+++|+++++||+++|++++|+++.++.  +
T Consensus        22 ~~p~~~a~~~~--~~~~Ty~~L~~~~~~~a~~L~~~g~~~g~~V~i~~~n~~~~~~~~la~~~~G~~~v~l~~~~~~--~   97 (540)
T PRK06164         22 ARPDAVALIDE--DRPLSRAELRALVDRLAAWLAAQGVRRGDRVAVWLPNCIEWVVLFLACARLGATVIAVNTRYRS--H   97 (540)
T ss_pred             hCCCCeEEecC--CCcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEecCCCCCc--H
Confidence            58999999864  6799999999999999999999999999999999999999999999999999999999999999  9


Q ss_pred             HHHHHhhcCc
Q psy16164        154 ELSQHCVGGL  163 (214)
Q Consensus       154 ~l~~~l~~s~  163 (214)
                      ++.+++.+++
T Consensus        98 ~l~~~i~~~~  107 (540)
T PRK06164         98 EVAHILGRGR  107 (540)
T ss_pred             HHHHHHHhcC
Confidence            9999998776

>PRK06839 acyl-CoA synthetase; Validated

Probab=99.41  E-value=1e-12  Score=116.54  Aligned_cols=86  Identities=23%  Similarity=0.280  Sum_probs=81.2

Q ss_pred             cCCCceEEEeCCCCeeeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCchhH
Q psy16164         74 VHYRLLFQIDAVTDITYTYDDILQKSLQLADALQK-RGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTEVV  152 (214)
Q Consensus        74 ~~pd~~al~~~~~~~~~Ty~el~~~~~~la~~L~~-~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~~~~  152 (214)
                      .+||++|++++  ++.+||.|+.++++++|.+|++ .|+.+|++|+++++|+++|+++++||+++|++++|+++.+++  
T Consensus        14 ~~p~~~a~~~~--~~~~ty~~l~~~~~~la~~L~~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~~~~~~~~~~--   89 (496)
T PRK06839         14 LHPDRIAIITE--EEEMTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFAIAKVECIAVPLNIRLTE--   89 (496)
T ss_pred             HCCCCeEEEEC--CceEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEEEecCcccCH--
Confidence            58999999985  7899999999999999999985 799999999999999999999999999999999999999999  


Q ss_pred             HHHHHHhhcCc
Q psy16164        153 KELSQHCVGGL  163 (214)
Q Consensus       153 ~~l~~~l~~s~  163 (214)
                      +++.+++..++
T Consensus        90 ~~~~~~l~~~~  100 (496)
T PRK06839         90 NELIFQLKDSG  100 (496)
T ss_pred             HHHHHHHHhcC
Confidence            99999998665

>PRK08279 long-chain-acyl-CoA synthetase; Validated

Probab=99.41  E-value=3.3e-12  Score=116.44  Aligned_cols=86  Identities=22%  Similarity=0.228  Sum_probs=82.3

Q ss_pred             cCCCceEEEeCCCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCchhHH
Q psy16164         74 VHYRLLFQIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTEVVK  153 (214)
Q Consensus        74 ~~pd~~al~~~~~~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~~~~~  153 (214)
                      .+|+++|+++.  ++.+||+||.+++.++|..|.+.|+++|++|+++++|+++++++++||+++|++++|+++.++.  +
T Consensus        49 ~~p~~~Ai~~~--~~~~Ty~eL~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~v~~~lA~~~~G~~~v~l~~~~~~--~  124 (600)
T PRK08279         49 RHPDRPALLFE--DQSISYAELNARANRYAHWAAARGVGKGDVVALLMENRPEYLAAWLGLAKLGAVVALLNTQQRG--A  124 (600)
T ss_pred             hCCCCcEEEeC--CCcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEEeecCCCCCH--H
Confidence            58999999986  6899999999999999999999999999999999999999999999999999999999999999  9


Q ss_pred             HHHHHhhcCc
Q psy16164        154 ELSQHCVGGL  163 (214)
Q Consensus       154 ~l~~~l~~s~  163 (214)
                      ++.+.+++++
T Consensus       125 ~l~~~l~~~~  134 (600)
T PRK08279        125 VLAHSLNLVD  134 (600)
T ss_pred             HHHHHHHhcC
Confidence            9999999766

>PRK06178 acyl-CoA synthetase; Validated

Probab=99.41  E-value=4.6e-12  Score=114.61  Aligned_cols=86  Identities=22%  Similarity=0.228  Sum_probs=81.8

Q ss_pred             cCCCceEEEeCCCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCchhHH
Q psy16164         74 VHYRLLFQIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTEVVK  153 (214)
Q Consensus        74 ~~pd~~al~~~~~~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~~~~~  153 (214)
                      .+|+++|+.+.  ++.+||.||.+++.++|..|.+.|+++|++|+++++|+++|+++++||+++|++++|++|.++.  .
T Consensus        45 ~~p~~~al~~~--~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~p~~~~--~  120 (567)
T PRK06178         45 ERPQRPAIIFY--GHVITYAELDELSDRFAALLRQRGVGAGDRVAVFLPNCPQFHIVFFGILKLGAVHVPVSPLFRE--H  120 (567)
T ss_pred             HCCCceEEEEC--CceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCcHHHHHHHHHHHhCeEEeecCCCCCH--H
Confidence            48999999886  6799999999999999999999999999999999999999999999999999999999999999  9


Q ss_pred             HHHHHhhcCc
Q psy16164        154 ELSQHCVGGL  163 (214)
Q Consensus       154 ~l~~~l~~s~  163 (214)
                      ++.+++..++
T Consensus       121 ~~~~~l~~~~  130 (567)
T PRK06178        121 ELSYELNDAG  130 (567)
T ss_pred             HHHHHHHhcC
Confidence            9999998766

>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

Probab=99.41  E-value=3e-12  Score=116.07  Aligned_cols=88  Identities=20%  Similarity=0.162  Sum_probs=81.1

Q ss_pred             cCCCceEEEeCCC--CeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCchh
Q psy16164         74 VHYRLLFQIDAVT--DITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTEV  151 (214)
Q Consensus        74 ~~pd~~al~~~~~--~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~~~  151 (214)
                      .+|+.+++.....  .+.+||+|+.+++.++|++|+.+|+.+||+|+|++.|+++|+++.+||+.+|++.||+++++++ 
T Consensus        28 ~~~~~~a~~~~~~~~~~~~ty~e~~~~v~~~a~gL~~lg~~~gdrvai~a~nr~eW~i~d~a~~~~g~v~Vp~y~t~~~-  106 (613)
T COG1022          28 DRPDGVALMYKELGGWEAITYRELYERVRALASGLLSLGIPAGDRVAIFAANRPEWAIADLAILALGAVSVPIYSTSTP-  106 (613)
T ss_pred             cCCcceeEeeecCCcceEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHHHHcCCeEEecCCCCCH-
Confidence            4777778875543  4589999999999999999999999779999999999999999999999999999999999999 


Q ss_pred             HHHHHHHhhcCc
Q psy16164        152 VKELSQHCVGGL  163 (214)
Q Consensus       152 ~~~l~~~l~~s~  163 (214)
                       +++.|++++++
T Consensus       107 -~~~~~iL~~se  117 (613)
T COG1022         107 -EQLAYILNESE  117 (613)
T ss_pred             -HHHHHHHhcCC
Confidence             99999999887

>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated

Probab=99.41  E-value=3.3e-12  Score=115.31  Aligned_cols=86  Identities=33%  Similarity=0.347  Sum_probs=82.0

Q ss_pred             cCCCceEEEeCCCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCchhHH
Q psy16164         74 VHYRLLFQIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTEVVK  153 (214)
Q Consensus        74 ~~pd~~al~~~~~~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~~~~~  153 (214)
                      .+|+++|+++.  ++.+||.||.+++.++|..|.+.|+++||+|+++++|+++++++++||+++|++++|++|.++.  +
T Consensus        35 ~~p~~~a~~~~--~~~lTy~~l~~~~~~~a~~L~~~gi~~gd~V~i~~~n~~~~~~~~la~~~~G~~~v~v~~~~~~--~  110 (557)
T PRK07059         35 QYADRPAFICM--GKAITYGELDELSRALAAWLQSRGLAKGARVAIMMPNVLQYPVAIAAVLRAGYVVVNVNPLYTP--R  110 (557)
T ss_pred             HcCCCceEEEc--CceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHhcCeEEeccCcccCH--H
Confidence            58999999985  7899999999999999999999999999999999999999999999999999999999999999  9


Q ss_pred             HHHHHhhcCc
Q psy16164        154 ELSQHCVGGL  163 (214)
Q Consensus       154 ~l~~~l~~s~  163 (214)
                      ++.+++.+++
T Consensus       111 ~~~~~~~~~~  120 (557)
T PRK07059        111 ELEHQLKDSG  120 (557)
T ss_pred             HHHHHHHccC
Confidence            9999998766

>PRK07514 malonyl-CoA synthase; Validated

Probab=99.41  E-value=1.8e-12  Score=115.31  Aligned_cols=88  Identities=25%  Similarity=0.274  Sum_probs=82.2

Q ss_pred             ccCCCceEEEeCCCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCchhH
Q psy16164         73 VVHYRLLFQIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTEVV  152 (214)
Q Consensus        73 ~~~pd~~al~~~~~~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~~~~  152 (214)
                      +.+|+++++.+. +++.+||.||.+++.++|..|.+.|+++||+|+++++|+++++++++||+++|++++|+++.++.  
T Consensus        13 ~~~~~~~a~~~~-~~~~~Ty~eL~~~~~~la~~L~~~g~~~gd~v~i~~~~~~e~~v~~la~~~~G~~~v~l~~~~~~--   89 (504)
T PRK07514         13 FADRDAPFIETP-DGLRYTYGDLDAASARLANLLVALGVKPGDRVAVQVEKSPEALALYLATLRAGAVFLPLNTAYTL--   89 (504)
T ss_pred             hhCCCCeEEEeC-CCCEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEEECCCCCCH--
Confidence            378999998874 46799999999999999999999999999999999999999999999999999999999999999  


Q ss_pred             HHHHHHhhcCc
Q psy16164        153 KELSQHCVGGL  163 (214)
Q Consensus       153 ~~l~~~l~~s~  163 (214)
                      +++...++.++
T Consensus        90 ~~~~~~l~~~~  100 (504)
T PRK07514         90 AELDYFIGDAE  100 (504)
T ss_pred             HHHHHHHHhCC
Confidence            99999998665

>PRK07656 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.40  E-value=1.5e-12  Score=115.77  Aligned_cols=86  Identities=23%  Similarity=0.237  Sum_probs=81.9

Q ss_pred             cCCCceEEEeCCCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCchhHH
Q psy16164         74 VHYRLLFQIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTEVVK  153 (214)
Q Consensus        74 ~~pd~~al~~~~~~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~~~~~  153 (214)
                      .+|+++|+.+.  ++++||+||.+.+.++|..|.+.|+++||+|+++++|+++++++++||+++|++++|+++.++.  +
T Consensus        17 ~~~~~~a~~~~--~~~~Ty~~l~~~~~~~a~~L~~~gv~~g~~V~l~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~--~   92 (513)
T PRK07656         17 RFGDKEAYVFG--DQRLTYAELNARVRRAAAALAALGIGKGDRVAIWAPNSPHWVIAALGALKAGAVVVPLNTRYTA--D   92 (513)
T ss_pred             HCCCCeEEEeC--CCceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHhcCeEEEecCcccCH--H
Confidence            58999999996  7899999999999999999999999999999999999999999999999999999999999999  9


Q ss_pred             HHHHHhhcCc
Q psy16164        154 ELSQHCVGGL  163 (214)
Q Consensus       154 ~l~~~l~~s~  163 (214)
                      ++...++.++
T Consensus        93 ~~~~~l~~~~  102 (513)
T PRK07656         93 EAAYILARGD  102 (513)
T ss_pred             HHHHHHhhcC
Confidence            9999988666

>PRK08162 acyl-CoA synthetase; Validated

Probab=99.40  E-value=1.9e-12  Score=116.41  Aligned_cols=86  Identities=21%  Similarity=0.236  Sum_probs=82.4

Q ss_pred             cCCCceEEEeCCCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCchhHH
Q psy16164         74 VHYRLLFQIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTEVVK  153 (214)
Q Consensus        74 ~~pd~~al~~~~~~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~~~~~  153 (214)
                      .+|+++|+.+.  +..+||+||.+++.++|.+|.+.|+++||+|+++++|+++++++++||+++|++++|+++.++.  +
T Consensus        30 ~~~~~~a~~~~--~~~~ty~~L~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~--~  105 (545)
T PRK08162         30 VYPDRPAVIHG--DRRRTWAETYARCRRLASALARRGIGRGDTVAVLLPNIPAMVEAHFGVPMAGAVLNTLNTRLDA--A  105 (545)
T ss_pred             HCCCCeEEEEC--CeEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHHhCcEEeccccccCh--H
Confidence            58999999885  6789999999999999999999999999999999999999999999999999999999999999  9


Q ss_pred             HHHHHhhcCc
Q psy16164        154 ELSQHCVGGL  163 (214)
Q Consensus       154 ~l~~~l~~s~  163 (214)
                      ++.+++.+++
T Consensus       106 ~~~~~l~~~~  115 (545)
T PRK08162        106 SIAFMLRHGE  115 (545)
T ss_pred             HHHHHHHhCC
Confidence            9999999777

>PRK07867 acyl-CoA synthetase; Validated

Probab=99.40  E-value=3.3e-12  Score=114.95  Aligned_cols=91  Identities=20%  Similarity=0.164  Sum_probs=82.7

Q ss_pred             CCCceEEEeCCCCeeeeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCchhHH
Q psy16164         75 HYRLLFQIDAVTDITYTYDDILQKSLQLADALQKR-GYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTEVVK  153 (214)
Q Consensus        75 ~pd~~al~~~~~~~~~Ty~el~~~~~~la~~L~~~-Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~~~~~  153 (214)
                      .++++++++.  ++++||.||.+++.++|.+|++. |++++++|+++++|+++|+++++||+++|++++|+++.++.  +
T Consensus        16 ~~~~~a~~~~--~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~--~   91 (529)
T PRK07867         16 EDDDRGLYFE--DSFTSWREHIRGSAARAAALRARLDPTRPPHVGVLLDNTPEFSLLLGAAALSGIVPVGLNPTRRG--A   91 (529)
T ss_pred             ccCCceEEEC--CcEEeHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCHHHHHHHHHHHhcCCEEEEecCCCCh--H
Confidence            4788999885  78999999999999999999987 89999999999999999999999999999999999999999  9


Q ss_pred             HHHHHhhcCc--eeecch
Q psy16164        154 ELSQHCVGGL--ELQQKR  169 (214)
Q Consensus       154 ~l~~~l~~s~--~~~~~~  169 (214)
                      ++.+++++++  .+.+..
T Consensus        92 ~l~~~l~~~~~~~li~~~  109 (529)
T PRK07867         92 ALARDIAHADCQLVLTES  109 (529)
T ss_pred             HHHHHHHhCCCeEEEECH
Confidence            9999999776  444443

>PRK06710 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.39  E-value=3.2e-12  Score=115.56  Aligned_cols=86  Identities=26%  Similarity=0.159  Sum_probs=82.0

Q ss_pred             cCCCceEEEeCCCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCchhHH
Q psy16164         74 VHYRLLFQIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTEVVK  153 (214)
Q Consensus        74 ~~pd~~al~~~~~~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~~~~~  153 (214)
                      .+|+++|+++.  ++.+||.||.+++.++|..|.+.|+++||+|+++++|+++++++++||+++|++++|++|.++.  +
T Consensus        36 ~~p~~~a~~~~--~~~~ty~eL~~~~~~la~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpi~p~~~~--~  111 (563)
T PRK06710         36 RYPEKKALHFL--GKDITFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGYYGTLLAGGIVVQTNPLYTE--R  111 (563)
T ss_pred             HCCCceEEEec--CeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHHcCeEEeccCcccCH--H
Confidence            58999999985  7899999999999999999999999999999999999999999999999999999999999999  9


Q ss_pred             HHHHHhhcCc
Q psy16164        154 ELSQHCVGGL  163 (214)
Q Consensus       154 ~l~~~l~~s~  163 (214)
                      ++.+.+..++
T Consensus       112 ~l~~~l~~~~  121 (563)
T PRK06710        112 ELEYQLHDSG  121 (563)
T ss_pred             HHHHHHhccC
Confidence            9999998765

>PRK07786 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.39  E-value=3.8e-12  Score=114.65  Aligned_cols=86  Identities=24%  Similarity=0.212  Sum_probs=82.1

Q ss_pred             cCCCceEEEeCCCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCchhHH
Q psy16164         74 VHYRLLFQIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTEVVK  153 (214)
Q Consensus        74 ~~pd~~al~~~~~~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~~~~~  153 (214)
                      .+|+++|+.+.  ++.+||.||.+.++++|.+|.+.|+++|++|+++++|+++|+++++||+++|++++|+++.++.  .
T Consensus        29 ~~~~~~a~~~~--~~~~ty~~l~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~~a~~~~G~~~vpl~~~~~~--~  104 (542)
T PRK07786         29 MQPDAPALRFL--GNTTTWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESVLAANMLGAIAVPVNFRLTP--P  104 (542)
T ss_pred             HCCCCeEEEeC--CCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEEEcCccCCH--H
Confidence            58999999986  6799999999999999999999999999999999999999999999999999999999999999  9


Q ss_pred             HHHHHhhcCc
Q psy16164        154 ELSQHCVGGL  163 (214)
Q Consensus       154 ~l~~~l~~s~  163 (214)
                      ++.+++.+++
T Consensus       105 ~~~~~l~~~~  114 (542)
T PRK07786        105 EIAFLVSDCG  114 (542)
T ss_pred             HHHHHHHhCC
Confidence            9999998766

>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional

Probab=99.39  E-value=3.6e-12  Score=115.38  Aligned_cols=86  Identities=23%  Similarity=0.337  Sum_probs=81.3

Q ss_pred             cCCCceEEEeCCCCeeeeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCchhH
Q psy16164         74 VHYRLLFQIDAVTDITYTYDDILQKSLQLADALQKR-GYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTEVV  152 (214)
Q Consensus        74 ~~pd~~al~~~~~~~~~Ty~el~~~~~~la~~L~~~-Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~~~~  152 (214)
                      .+|+++|+++.  +..+||.||.++++++|+.|.+. |+++||+|+++++|+++|+++++||+++|++++|+++.++.  
T Consensus        36 ~~p~~~a~~~~--~~~~Ty~~l~~~~~~~a~~L~~~~gi~~gd~V~i~~~n~~e~~~~~la~~~~G~v~v~~~~~~~~--  111 (562)
T PRK12492         36 KFADRPAFSNL--GVTLSYAELERHSAAFAAYLQQHTDLVPGDRIAVQMPNVLQYPIAVFGALRAGLIVVNTNPLYTA--  111 (562)
T ss_pred             hCCCCeeEecC--CceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEeccCccCCH--
Confidence            58999999875  67999999999999999999984 99999999999999999999999999999999999999999  


Q ss_pred             HHHHHHhhcCc
Q psy16164        153 KELSQHCVGGL  163 (214)
Q Consensus       153 ~~l~~~l~~s~  163 (214)
                      +++.+++.+++
T Consensus       112 ~~l~~~l~~~~  122 (562)
T PRK12492        112 REMRHQFKDSG  122 (562)
T ss_pred             HHHHHHHhccC
Confidence            99999999766

>PRK05850 acyl-CoA synthetase; Validated

Probab=99.38  E-value=4e-12  Score=115.32  Aligned_cols=87  Identities=17%  Similarity=0.216  Sum_probs=77.8

Q ss_pred             cCCCceEEEeCC-------CCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCC
Q psy16164         74 VHYRLLFQIDAV-------TDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINP  146 (214)
Q Consensus        74 ~~pd~~al~~~~-------~~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~  146 (214)
                      .+|+++|+++.+       .++++||.||..++.++|.+|.+.| .+||+|+++++|+++|+++++||+++|++++|+++
T Consensus        13 ~~p~~~a~~~~~~~~~~~~~~~~lty~eL~~~v~~~A~~L~~~g-~~gd~V~l~~~n~~~~~~~~lA~~~~G~v~vpl~~   91 (578)
T PRK05850         13 LQPDDAAFTFIDYEQDPAGVAETLTWSQLYRRTLNVAEELRRHG-STGDRAVILAPQGLEYIVAFLGALQAGLIAVPLSV   91 (578)
T ss_pred             cCCCceEEEEEccCCCCCCceeeecHHHHHHHHHHHHHHHHHhC-CCCCEEEEEcCCcccHHHHHHHHHHcCceEEecCC
Confidence            589999998632       1368999999999999999999999 68999999999999999999999999999999997


Q ss_pred             C---CchhHHHHHHHhhcCc
Q psy16164        147 Q---YTEVVKELSQHCVGGL  163 (214)
Q Consensus       147 ~---~~~~~~~l~~~l~~s~  163 (214)
                      .   ++.  +++.+++++++
T Consensus        92 ~~~~~~~--~~l~~~l~~~~  109 (578)
T PRK05850         92 PQGGAHD--ERVSAVLRDTS  109 (578)
T ss_pred             CCccchH--HHHHHHHHhcC
Confidence            4   456  89999998776

>PRK07638 acyl-CoA synthetase; Validated

Probab=99.38  E-value=2.3e-12  Score=114.42  Aligned_cols=85  Identities=19%  Similarity=0.323  Sum_probs=79.8

Q ss_pred             cCCCceEEEeCCCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCchhHH
Q psy16164         74 VHYRLLFQIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTEVVK  153 (214)
Q Consensus        74 ~~pd~~al~~~~~~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~~~~~  153 (214)
                      .+||++|+++.  +..+||.||.+++.++|++|.+.| .+|++|+|+++|+++|+++++||+++|++++|+++.+++  +
T Consensus        13 ~~p~~~a~~~~--~~~~Ty~~l~~~~~~~a~~L~~~~-~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~--~   87 (487)
T PRK07638         13 LQPNKIAIKEN--DRVLTYKDWFESVCKVANWLNEKE-SKNKTIAILLENRIEFLQLFAGAAMAGWTCVPLDIKWKQ--D   87 (487)
T ss_pred             hCCCCeEEecC--CcEeeHHHHHHHHHHHHHHHHHhC-CCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCccCCH--H
Confidence            58999999986  789999999999999999999988 489999999999999999999999999999999999999  9


Q ss_pred             HHHHHhhcCc
Q psy16164        154 ELSQHCVGGL  163 (214)
Q Consensus       154 ~l~~~l~~s~  163 (214)
                      ++.+++..++
T Consensus        88 ~~~~~~~~~~   97 (487)
T PRK07638         88 ELKERLAISN   97 (487)
T ss_pred             HHHHHHHhCC
Confidence            9999988765

>PRK06187 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.38  E-value=8.3e-12  Score=111.06  Aligned_cols=86  Identities=21%  Similarity=0.216  Sum_probs=81.5

Q ss_pred             cCCCceEEEeCCCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCchhHH
Q psy16164         74 VHYRLLFQIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTEVVK  153 (214)
Q Consensus        74 ~~pd~~al~~~~~~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~~~~~  153 (214)
                      .+|+++|+.+.  ++.+||+||.+.+.++|+.|.+.|+++|++|+++++|+++++++++||+++|++++|+++.++.  +
T Consensus        18 ~~p~~~a~~~~--~~~~Ty~~l~~~~~~~a~~L~~~g~~~~~~V~l~~~~~~~~~~~~la~~~~G~~~v~~~~~~~~--~   93 (521)
T PRK06187         18 KHPDKEAVYFD--GRRTTYAELDERVNRLANALRALGVKKGDRVAVFDWNSHEYLEAYFAVPKIGAVLHPINIRLKP--E   93 (521)
T ss_pred             HCCCceEEEeC--CceEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEEecccCCCH--H
Confidence            58999999986  6679999999999999999999999999999999999999999999999999999999999999  9


Q ss_pred             HHHHHhhcCc
Q psy16164        154 ELSQHCVGGL  163 (214)
Q Consensus       154 ~l~~~l~~s~  163 (214)
                      ++...++.++
T Consensus        94 ~~~~~i~~~~  103 (521)
T PRK06187         94 EIAYILNDAE  103 (521)
T ss_pred             HHHHHHHhcC
Confidence            9999998665

>PRK06145 acyl-CoA synthetase; Validated

Probab=99.38  E-value=2.3e-12  Score=114.45  Aligned_cols=86  Identities=26%  Similarity=0.269  Sum_probs=81.9

Q ss_pred             cCCCceEEEeCCCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCchhHH
Q psy16164         74 VHYRLLFQIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTEVVK  153 (214)
Q Consensus        74 ~~pd~~al~~~~~~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~~~~~  153 (214)
                      .+|+++|+++.  ++.+||.||.+++.++|.+|.+.|+.+|++|+++++|+++++++++||+++|++++|+++.++.  +
T Consensus        14 ~~~~~~a~~~~--~~~~ty~el~~~v~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~--~   89 (497)
T PRK06145         14 RTPDRAALVYR--DQEISYAEFHQRILQAAGMLHARGIGQGDVVALLMKNSAAFLELAFAASYLGAVFLPINYRLAA--D   89 (497)
T ss_pred             HCCCceEEEEC--CcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEEEecccccCH--H
Confidence            48999999886  7899999999999999999999999999999999999999999999999999999999999999  9


Q ss_pred             HHHHHhhcCc
Q psy16164        154 ELSQHCVGGL  163 (214)
Q Consensus       154 ~l~~~l~~s~  163 (214)
                      ++.+++.+++
T Consensus        90 ~~~~~l~~~~   99 (497)
T PRK06145         90 EVAYILGDAG   99 (497)
T ss_pred             HHHHHHHhcC
Confidence            9999998666

>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

Probab=99.38  E-value=2.2e-12  Score=120.20  Aligned_cols=86  Identities=19%  Similarity=0.091  Sum_probs=78.3

Q ss_pred             cCCC-ceEEEeCCCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCchhH
Q psy16164         74 VHYR-LLFQIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTEVV  152 (214)
Q Consensus        74 ~~pd-~~al~~~~~~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~~~~  152 (214)
                      .+|+ ++|+.+. .++++||+||.++++++|++|.+. +++||+|+++++|+++|+++++||+++|++++|+|+.+++  
T Consensus       216 ~~p~~~~a~~~~-~~~~~Ty~el~~~~~~lA~~L~~~-~~~gd~Val~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~--  291 (718)
T PRK08043        216 RYGAGKPCIEDV-NFTPDSYRKLLKKTLFVGRILEKY-SVEGERIGLMLPNATISAAVIFGASLRRRIPAMMNYTAGV--  291 (718)
T ss_pred             HhCCCCcceEcC-CCCcccHHHHHHHHHHHHHHHHHh-cCCCceEEEEcCCcHHHHHHHHHHHHcCCcccccccCcCH--
Confidence            4887 5777653 246899999999999999999987 5999999999999999999999999999999999999999  


Q ss_pred             HHHHHHhhcCc
Q psy16164        153 KELSQHCVGGL  163 (214)
Q Consensus       153 ~~l~~~l~~s~  163 (214)
                      +++.+++++++
T Consensus       292 ~~l~~~l~~s~  302 (718)
T PRK08043        292 KGLTSAITAAE  302 (718)
T ss_pred             HHHHHHHHHcC
Confidence            99999999877

>PRK13391 acyl-CoA synthetase; Provisional

Probab=99.38  E-value=5.4e-12  Score=112.72  Aligned_cols=88  Identities=27%  Similarity=0.255  Sum_probs=83.2

Q ss_pred             cCCCceEEEeCCCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCchhHH
Q psy16164         74 VHYRLLFQIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTEVVK  153 (214)
Q Consensus        74 ~~pd~~al~~~~~~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~~~~~  153 (214)
                      .+||++|+++..++..+||.||..++.++|+.|.+.|+++|++|+++++|+++++++++||+++|++++|+++.++.  +
T Consensus         9 ~~p~~~a~~~~~~~~~~ty~~l~~~~~~la~~L~~~g~~~~~~V~v~~~~~~~~~~~~~a~~~~G~~~~~l~~~~~~--~   86 (511)
T PRK13391          9 TTPDKPAVIMASTGEVVTYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLEVCWAAERSGLYYTCVNSHLTP--A   86 (511)
T ss_pred             hCCCceEEEecCCCCEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhccEEeccccccCH--H
Confidence            58999999876567889999999999999999999999999999999999999999999999999999999999999  9


Q ss_pred             HHHHHhhcCc
Q psy16164        154 ELSQHCVGGL  163 (214)
Q Consensus       154 ~l~~~l~~s~  163 (214)
                      ++.+++.+++
T Consensus        87 ~l~~~l~~~~   96 (511)
T PRK13391         87 EAAYIVDDSG   96 (511)
T ss_pred             HHHHHHhccC
Confidence            9999998766

>PRK09088 acyl-CoA synthetase; Validated

Probab=99.38  E-value=3.6e-12  Score=113.09  Aligned_cols=88  Identities=19%  Similarity=0.236  Sum_probs=82.7

Q ss_pred             cCCCceEEEeCCCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCchhHH
Q psy16164         74 VHYRLLFQIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTEVVK  153 (214)
Q Consensus        74 ~~pd~~al~~~~~~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~~~~~  153 (214)
                      .+||++|+.+...+..+||.|+.+.+.++|.+|.+.|+++|++|+++++|+++|+++++||+++|++++|+++.+++  +
T Consensus         7 ~~p~~~a~~~~~~~~~~ty~~l~~~v~~~a~~l~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~~~~~~~~--~   84 (488)
T PRK09088          7 LQPQRLAAVDLALGRRWTYAELDALVGRLAAVLRRRGCVDGERLAVLARNSVWLVALHFACARVGAIYVPLNWRLSA--S   84 (488)
T ss_pred             hCCCceEEEecCCCcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEEeeCccCCH--H
Confidence            58999999875457899999999999999999999999999999999999999999999999999999999999999  9


Q ss_pred             HHHHHhhcCc
Q psy16164        154 ELSQHCVGGL  163 (214)
Q Consensus       154 ~l~~~l~~s~  163 (214)
                      ++.+++.+++
T Consensus        85 ~~~~~~~~~~   94 (488)
T PRK09088         85 ELDALLQDAE   94 (488)
T ss_pred             HHHHHHHhCC
Confidence            9999998766

>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional

Probab=99.37  E-value=2.7e-12  Score=115.86  Aligned_cols=86  Identities=27%  Similarity=0.305  Sum_probs=81.2

Q ss_pred             cCCCceEEEeCCCCeeeeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCchhH
Q psy16164         74 VHYRLLFQIDAVTDITYTYDDILQKSLQLADALQ-KRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTEVV  152 (214)
Q Consensus        74 ~~pd~~al~~~~~~~~~Ty~el~~~~~~la~~L~-~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~~~~  152 (214)
                      .+|+++|+++.  ++.+||+||.+++.++|..|. +.|+++|++|+++++|+++++++++||+++|++++|++|.++.  
T Consensus        37 ~~~~~~a~~~~--~~~~Ty~el~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~p~~~~--  112 (560)
T PRK08751         37 KFADRPAYHSF--GKTITYREADQLVEQFAAYLLGELQLKKGDRVALMMPNCLQYPIATFGVLRAGLTVVNVNPLYTP--  112 (560)
T ss_pred             hCCCCceEEEC--CceeeHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHhCeEEeccCccCCH--
Confidence            58999999875  789999999999999999996 6899999999999999999999999999999999999999999  


Q ss_pred             HHHHHHhhcCc
Q psy16164        153 KELSQHCVGGL  163 (214)
Q Consensus       153 ~~l~~~l~~s~  163 (214)
                      +++.+++.+++
T Consensus       113 ~~~~~~l~~~~  123 (560)
T PRK08751        113 RELKHQLIDSG  123 (560)
T ss_pred             HHHHHHHHhcC
Confidence            99999998766

>PRK10252 entF enterobactin synthase subunit F; Provisional

Probab=99.37  E-value=3.9e-12  Score=125.05  Aligned_cols=86  Identities=17%  Similarity=0.252  Sum_probs=82.6

Q ss_pred             cCCCceEEEeCCCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCchhHH
Q psy16164         74 VHYRLLFQIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTEVVK  153 (214)
Q Consensus        74 ~~pd~~al~~~~~~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~~~~~  153 (214)
                      .+|+++|+++.  +..+||+||.+++.++|+.|.+.|+++|++|+++++|+++++++++||+++|++++|++|.++.  +
T Consensus       470 ~~p~~~Al~~~--~~~~Ty~eL~~~~~~la~~L~~~g~~~g~~V~l~~~~~~~~i~~~la~~~~G~~~vpld~~~p~--~  545 (1296)
T PRK10252        470 KTPDAPALADA--RYQFSYREMREQVVALANLLRERGVKPGDSVAVALPRSVFLTLALHAIVEAGAAWLPLDTGYPD--D  545 (1296)
T ss_pred             hCCCCeEEEcC--CCcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEecCccCHH--H
Confidence            48999999986  6789999999999999999999999999999999999999999999999999999999999999  9


Q ss_pred             HHHHHhhcCc
Q psy16164        154 ELSQHCVGGL  163 (214)
Q Consensus       154 ~l~~~l~~s~  163 (214)
                      ++.+++++++
T Consensus       546 ~~~~~l~~~~  555 (1296)
T PRK10252        546 RLKMMLEDAR  555 (1296)
T ss_pred             HHHHHHHhCC
Confidence            9999999876

>PRK12467 peptide synthase; Provisional

Probab=99.37  E-value=2.3e-12  Score=137.32  Aligned_cols=88  Identities=16%  Similarity=0.183  Sum_probs=84.0

Q ss_pred             cccCCCceEEEeCCCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCchh
Q psy16164         72 NVVHYRLLFQIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTEV  151 (214)
Q Consensus        72 ~~~~pd~~al~~~~~~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~~~  151 (214)
                      +..+||++|++++  ++++||+||.+++.++|+.|.+.|+++|++|+++++|+++++++++||+++|+++||++|.++. 
T Consensus      3105 a~~~p~~~Av~~~--~~~lTY~eL~~~a~~lA~~L~~~gv~~g~~V~l~~~~s~~~vv~~lavl~aGa~~vpld~~~p~- 3181 (3956)
T PRK12467       3105 VARTPEAPALVFG--DQQLSYAELNRRANRLAHRLIAIGVGPDVLVGVAVERSVEMIVALLAVLKAGGAYVPLDPEYPR- 3181 (3956)
T ss_pred             HHhCCCcceEeeC--CcccCHHHHHHHHHHHHHHHHHcCCCCCCeEEEEeCCCHHHHHHHHHHHhhCcEeecCCCCChH-
Confidence            3359999999996  7899999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             HHHHHHHhhcCc
Q psy16164        152 VKELSQHCVGGL  163 (214)
Q Consensus       152 ~~~l~~~l~~s~  163 (214)
                       +++.+++++++
T Consensus      3182 -~rl~~il~~~~ 3192 (3956)
T PRK12467       3182 -ERLAYMIEDSG 3192 (3956)
T ss_pred             -HHHHHHHhCCC
Confidence             99999999877

>PRK05620 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.37  E-value=1.1e-11  Score=112.52  Aligned_cols=88  Identities=17%  Similarity=0.118  Sum_probs=81.4

Q ss_pred             cCCCceEEEeCC-CCeeeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCchh
Q psy16164         74 VHYRLLFQIDAV-TDITYTYDDILQKSLQLADALQK-RGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTEV  151 (214)
Q Consensus        74 ~~pd~~al~~~~-~~~~~Ty~el~~~~~~la~~L~~-~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~~~  151 (214)
                      .+|+++|+++.. .++.+||+||.+++.++|.+|.. .|+++||+|+++++|+++++++++||+++|++++|++|.++. 
T Consensus        22 ~~~~~~a~~~~~~~~~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~~~~~n~~e~~~~~lA~~~~G~~~v~l~~~~~~-  100 (576)
T PRK05620         22 VHGDTTVTTWGGAEQEQTTFAAIGARAAALAHALHDELGITGDQRVGSMMYNCAEHLEVLFAVACMGAVFNPLNKQLMN-  100 (576)
T ss_pred             hCCCceEEEEcCCceEEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHHHhcCCEEeecccccCH-
Confidence            589999988643 24689999999999999999986 799999999999999999999999999999999999999999 


Q ss_pred             HHHHHHHhhcCc
Q psy16164        152 VKELSQHCVGGL  163 (214)
Q Consensus       152 ~~~l~~~l~~s~  163 (214)
                       +++.++++.++
T Consensus       101 -~~l~~~l~~~~  111 (576)
T PRK05620        101 -DQIVHIINHAE  111 (576)
T ss_pred             -HHHHHHHhccC
Confidence             99999999766

>PRK12467 peptide synthase; Provisional

Probab=99.37  E-value=2.1e-12  Score=137.54  Aligned_cols=86  Identities=19%  Similarity=0.213  Sum_probs=83.2

Q ss_pred             cCCCceEEEeCCCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCchhHH
Q psy16164         74 VHYRLLFQIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTEVVK  153 (214)
Q Consensus        74 ~~pd~~al~~~~~~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~~~~~  153 (214)
                      .+|+++|++++  ++.+||+||.++++++|+.|.+.|+++|++|+++++|+++++++++||+++|++++|++|.++.  +
T Consensus      1586 ~~p~~~Av~~~--~~~lTY~eL~~~a~~lA~~L~~~Gv~~~~~V~l~~~~s~~~vv~~lavlkaG~~~vpldp~~p~--~ 1661 (3956)
T PRK12467       1586 ATPEAVALVFG--EQELTYGELNRRANRLAHRLIALGVGPEVLVGIAVERSLEMVVGLLAILKAGGAYVPLDPEYPR--E 1661 (3956)
T ss_pred             hCCCCeEEEeC--CcEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCCHHHHHHHHHhhccCceeeecCCCCCH--H
Confidence            59999999986  7899999999999999999999999999999999999999999999999999999999999999  9


Q ss_pred             HHHHHhhcCc
Q psy16164        154 ELSQHCVGGL  163 (214)
Q Consensus       154 ~l~~~l~~s~  163 (214)
                      ++.+++++++
T Consensus      1662 rl~~il~~~~ 1671 (3956)
T PRK12467       1662 RLAYMIEDSG 1671 (3956)
T ss_pred             HHHHHHHhCC
Confidence            9999999887

>PRK08316 acyl-CoA synthetase; Validated

Probab=99.37  E-value=9.6e-12  Score=110.92  Aligned_cols=86  Identities=22%  Similarity=0.189  Sum_probs=81.8

Q ss_pred             cCCCceEEEeCCCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCchhHH
Q psy16164         74 VHYRLLFQIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTEVVK  153 (214)
Q Consensus        74 ~~pd~~al~~~~~~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~~~~~  153 (214)
                      .+|+++|+.+.  +..+||.||.+.+.++|..|.+.|+++|++|+++++|+++++++++||+++|++++|+++.++.  +
T Consensus        23 ~~~~~~a~~~~--~~~~Ty~~l~~~~~~~a~~L~~~gi~~~~~V~l~~~~~~~~~~~~~a~~~~G~~~v~l~~~~~~--~   98 (523)
T PRK08316         23 RYPDKTALVFG--DRSWTYAELDAAVNRVAAALLDLGLKKGDRVAALGHNSDAYALLWLACARAGAVHVPVNFMLTG--E   98 (523)
T ss_pred             HCCCCeEEEEC--CceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEEEecccccCH--H
Confidence            58999999986  6899999999999999999999999999999999999999999999999999999999999999  9


Q ss_pred             HHHHHhhcCc
Q psy16164        154 ELSQHCVGGL  163 (214)
Q Consensus       154 ~l~~~l~~s~  163 (214)
                      ++.+.++.++
T Consensus        99 ~i~~~l~~~~  108 (523)
T PRK08316         99 ELAYILDHSG  108 (523)
T ss_pred             HHHHHHHhCC
Confidence            9999998655

>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase

Probab=99.36  E-value=6.9e-12  Score=112.79  Aligned_cols=88  Identities=22%  Similarity=0.262  Sum_probs=81.2

Q ss_pred             cCCCceEEEeCC----CCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCc
Q psy16164         74 VHYRLLFQIDAV----TDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYT  149 (214)
Q Consensus        74 ~~pd~~al~~~~----~~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~  149 (214)
                      .+|+++|+++..    .+..+||+||.+++.++|.+|.+.|+++|++|+++++|+++++++++||+++|++++|++|.++
T Consensus        34 ~~p~~~a~~~~~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~  113 (538)
T TIGR03208        34 NCPDKPALTAYRDGHGAVRRFSYRELDCRVDRIAVGLARLGVGRGDVVSFQLPNRWEFTALYLACARIGAVLNPLMPIFR  113 (538)
T ss_pred             HCCCceEEEeecccCCCcceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcCEEEeccCcccC
Confidence            589999987521    2468999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHhhcCc
Q psy16164        150 EVVKELSQHCVGGL  163 (214)
Q Consensus       150 ~~~~~l~~~l~~s~  163 (214)
                      .  +++.+++..++
T Consensus       114 ~--~~l~~~l~~~~  125 (538)
T TIGR03208       114 E--RELSFMLNHAD  125 (538)
T ss_pred             H--HHHHHHHHhcC
Confidence            9  99999998766

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris.

>PRK05691 peptide synthase; Validated

Probab=99.35  E-value=2.6e-12  Score=137.69  Aligned_cols=89  Identities=18%  Similarity=0.205  Sum_probs=84.3

Q ss_pred             ccccCCCceEEEeCCCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCch
Q psy16164         71 PNVVHYRLLFQIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTE  150 (214)
Q Consensus        71 ~~~~~pd~~al~~~~~~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~~  150 (214)
                      ++..+||++|+++.  +..+||+||.++++++|..|.+.|+++|++|+|+++++++++++++|++++|+++||++|.+|.
T Consensus      3729 ~~~~~p~~~Av~~~--~~~~tY~eL~~~~~~la~~L~~~gv~~~~~V~v~~~~s~~~~v~~lavlkaG~a~vpld~~~p~ 3806 (4334)
T PRK05691       3729 QVAAHPQRIAASCL--DQQWSYAELNRAANRLGHALRAAGVGVDQPVALLAERGLDLLGMIVGSFKAGAGYLPLDPGLPA 3806 (4334)
T ss_pred             HHHhCCCceEEEcC--CCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHhhCcEEeCCCCCChH
Confidence            34459999999986  7789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHhhcCc
Q psy16164        151 VVKELSQHCVGGL  163 (214)
Q Consensus       151 ~~~~l~~~l~~s~  163 (214)
                        +++.+++.+++
T Consensus      3807 --~r~~~il~~~~ 3817 (4334)
T PRK05691       3807 --QRLQRIIELSR 3817 (4334)
T ss_pred             --HHHHHHHHhcC
Confidence              99999999877

>PRK07470 acyl-CoA synthetase; Validated

Probab=99.35  E-value=9.2e-12  Score=111.61  Aligned_cols=86  Identities=24%  Similarity=0.187  Sum_probs=82.0

Q ss_pred             cCCCceEEEeCCCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCchhHH
Q psy16164         74 VHYRLLFQIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTEVVK  153 (214)
Q Consensus        74 ~~pd~~al~~~~~~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~~~~~  153 (214)
                      .+|+++|+.+.  +..+||+|+.+++.++|..|.+.|+++|++|+++++|+++++++++||+++|++++|+++.++.  +
T Consensus        19 ~~p~~~a~~~~--~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~--~   94 (528)
T PRK07470         19 RFPDRIALVWG--DRSWTWREIDARVDALAAALAARGVRKGDRILVHSRNCNQMFESMFAAFRLGAVWVPTNFRQTP--D   94 (528)
T ss_pred             HCCCceEEEEC--CccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHhCCeEEEecCccCCH--H
Confidence            58999999985  6799999999999999999999999999999999999999999999999999999999999999  9


Q ss_pred             HHHHHhhcCc
Q psy16164        154 ELSQHCVGGL  163 (214)
Q Consensus       154 ~l~~~l~~s~  163 (214)
                      ++.+++..++
T Consensus        95 ~~~~~~~~~~  104 (528)
T PRK07470         95 EVAYLAEASG  104 (528)
T ss_pred             HHHHHHHhcC
Confidence            9999998766

>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1

Probab=99.35  E-value=6.2e-12  Score=111.78  Aligned_cols=86  Identities=12%  Similarity=0.061  Sum_probs=80.9

Q ss_pred             cCCCceEEEeCCCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCchhHH
Q psy16164         74 VHYRLLFQIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTEVVK  153 (214)
Q Consensus        74 ~~pd~~al~~~~~~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~~~~~  153 (214)
                      .+|+++|+.+.  +..+||.||.+++.++|..|.+.|+++|++|+++++|+.+|+++++||+++|++++|+++.++.  +
T Consensus        12 ~~p~~~a~~~~--~~~~ty~el~~~~~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~v~~~~~~~~--~   87 (502)
T TIGR01734        12 TYPQTIAYRYQ--GQELTYQQLKEQSDRLAAFIQKRILPKKSPIIVYGHMEPHMLVAFLGSIKSGHAYIPVDTSIPS--E   87 (502)
T ss_pred             HCCCceEEEcC--CcEEeHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCEEeCCCCcChH--H
Confidence            48999999875  7899999999999999999999999999999999999999999999999999999999999999  9


Q ss_pred             HHHHHhhcCc
Q psy16164        154 ELSQHCVGGL  163 (214)
Q Consensus       154 ~l~~~l~~s~  163 (214)
                      ++.+.+...+
T Consensus        88 ~~~~~~~~~~   97 (502)
T TIGR01734        88 RIEMIIEAAG   97 (502)
T ss_pred             HHHHHHHhcC
Confidence            9988888655

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides.

>PRK05691 peptide synthase; Validated

Probab=99.35  E-value=4.9e-12  Score=135.66  Aligned_cols=86  Identities=21%  Similarity=0.179  Sum_probs=83.1

Q ss_pred             cCCCceEEEeCCCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCchhHH
Q psy16164         74 VHYRLLFQIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTEVVK  153 (214)
Q Consensus        74 ~~pd~~al~~~~~~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~~~~~  153 (214)
                      .+||++|+++.  ++++||+||.++++++|.+|.+.|+++|++|+++++|+++++++++||+++|+++||++|.++.  +
T Consensus      2200 ~~p~~~Av~~~--~~~lTY~eL~~~~~~lA~~L~~~Gv~~g~~V~l~~~~s~~~vv~~lailkaG~~~vpld~~~p~--~ 2275 (4334)
T PRK05691       2200 RTPQAPALTFA--GQTLSYAELDARANRLARALRERGVGPQVRVGLALERSLEMVVGLLAILKAGGAYVPLDPEYPL--E 2275 (4334)
T ss_pred             HCCCCeEEEeC--CeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCcEeecCCCCChH--H
Confidence            49999999986  7899999999999999999999999999999999999999999999999999999999999999  9


Q ss_pred             HHHHHhhcCc
Q psy16164        154 ELSQHCVGGL  163 (214)
Q Consensus       154 ~l~~~l~~s~  163 (214)
                      ++.+++.+++
T Consensus      2276 rl~~il~~~~ 2285 (4334)
T PRK05691       2276 RLHYMIEDSG 2285 (4334)
T ss_pred             HHHHHHHhcC
Confidence            9999999877

>PRK07008 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.35  E-value=4.3e-12  Score=114.29  Aligned_cols=88  Identities=23%  Similarity=0.147  Sum_probs=79.6

Q ss_pred             cCCCceEEEeCCC--CeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCchh
Q psy16164         74 VHYRLLFQIDAVT--DITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTEV  151 (214)
Q Consensus        74 ~~pd~~al~~~~~--~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~~~  151 (214)
                      .+|+..++.+...  .+.+||.||.++++++|.+|.+.|+++||+|+++++|+++|+++++||+++|++++|++|.+++ 
T Consensus        22 ~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~~d~v~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~-  100 (539)
T PRK07008         22 HAGDTEIVSRRVEGDIHRYTYRDCERRAKQLAQALAALGVEPGDRVGTLAWNGYRHLEAYYGVSGSGAVCHTINPRLFP-  100 (539)
T ss_pred             hCCCceEEEeeccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCcEEeecccccCH-
Confidence            3677777765322  3589999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             HHHHHHHhhcCc
Q psy16164        152 VKELSQHCVGGL  163 (214)
Q Consensus       152 ~~~l~~~l~~s~  163 (214)
                       +++.++++.++
T Consensus       101 -~~l~~~l~~~~  111 (539)
T PRK07008        101 -EQIAYIVNHAE  111 (539)
T ss_pred             -HHHHHHHhccC
Confidence             99999998766

>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase

Probab=99.34  E-value=9e-12  Score=111.78  Aligned_cols=86  Identities=20%  Similarity=0.164  Sum_probs=82.0

Q ss_pred             cCCCceEEEeCCCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCchhHH
Q psy16164         74 VHYRLLFQIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTEVVK  153 (214)
Q Consensus        74 ~~pd~~al~~~~~~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~~~~~  153 (214)
                      .+|+++|+++.  ++.+||+|+..+++++|..|.+.|+++|++|+++++|+++|+++++||+++|++++++++.++.  +
T Consensus        35 ~~p~~~a~~~~--~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~~~~~~~~--~  110 (527)
T TIGR02275        35 RYPDAIAIICG--NRQWSYRELDQRADNLAAGLTKLGIGQGDTAVVQLPNIAEFYIVFFALLKLGIAPVLALFSHRK--S  110 (527)
T ss_pred             HCCCceEEEeC--CceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHcCeEEeccccccCH--H
Confidence            58999999986  7899999999999999999999999999999999999999999999999999999999999999  9


Q ss_pred             HHHHHhhcCc
Q psy16164        154 ELSQHCVGGL  163 (214)
Q Consensus       154 ~l~~~l~~s~  163 (214)
                      ++.+.+..++
T Consensus       111 ~~~~~l~~~~  120 (527)
T TIGR02275       111 ELTAYAQQIE  120 (527)
T ss_pred             HHHHHHHhcC
Confidence            9999998766

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB.

>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated

Probab=99.34  E-value=1.6e-11  Score=109.43  Aligned_cols=86  Identities=24%  Similarity=0.303  Sum_probs=81.7

Q ss_pred             cCCCceEEEeCCCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCchhHH
Q psy16164         74 VHYRLLFQIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTEVVK  153 (214)
Q Consensus        74 ~~pd~~al~~~~~~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~~~~~  153 (214)
                      .+|+++++.+.  ++++||+|+..++.++|..|.+.|+.+|++|+++++|+++++++++||+.+|++++|+++.++.  +
T Consensus        12 ~~p~~~a~~~~--~~~~ty~~l~~~v~~~a~~l~~~g~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~--~   87 (515)
T TIGR03098        12 RLPDATALVHH--DRTLTYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAALAGGVFVPINPLLKA--E   87 (515)
T ss_pred             HCCCCeEEEEC--CceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCEEEEeCCCCCCH--H
Confidence            58999999986  6799999999999999999999999999999999999999999999999999999999999999  9


Q ss_pred             HHHHHhhcCc
Q psy16164        154 ELSQHCVGGL  163 (214)
Q Consensus       154 ~l~~~l~~s~  163 (214)
                      ++..+++.++
T Consensus        88 ~~~~~l~~~~   97 (515)
T TIGR03098        88 QVAHILADCN   97 (515)
T ss_pred             HHHHHHHcCC
Confidence            9999998765

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present.

>PRK12476 putative fatty-acid--CoA ligase; Provisional

Probab=99.34  E-value=1.1e-11  Score=113.37  Aligned_cols=89  Identities=16%  Similarity=0.103  Sum_probs=77.7

Q ss_pred             cCCCceEEEeCC-------CCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEec-C
Q psy16164         74 VHYRLLFQIDAV-------TDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSI-N  145 (214)
Q Consensus        74 ~~pd~~al~~~~-------~~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl-~  145 (214)
                      .+|+++|+++.+       ..+.+||+||.+++.++|++|.+. +++||+|+++++|+++|+++++||+++|++++|+ +
T Consensus        46 ~~~~~~a~~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~-~~~gd~V~l~~~n~~e~~~~~lA~~~aG~v~vpl~~  124 (612)
T PRK12476         46 NVGDTVAYRYLDHSHSAAGCAVELTWTQLGVRLRAVGARLQQV-AGPGDRVAILAPQGIDYVAGFFAAIKAGTIAVPLFA  124 (612)
T ss_pred             hCCCceEEEEEccCCCCCCcceEEeHHHHHHHHHHHHHHHHHh-cCCCCEEEEECCCChhHHHHHHHHHHcCceeEecCC
Confidence            589999988632       124899999999999999999986 9999999999999999999999999999999999 5


Q ss_pred             CCCchhHHHHHHHhhcCc
Q psy16164        146 PQYTEVVKELSQHCVGGL  163 (214)
Q Consensus       146 ~~~~~~~~~l~~~l~~s~  163 (214)
                      +.++...+++.+++++++
T Consensus       125 ~~~~~~~~~l~~~l~~~~  142 (612)
T PRK12476        125 PELPGHAERLDTALRDAE  142 (612)
T ss_pred             CCcchhHHHHHHHHHhCC
Confidence            777621289999999876

>PRK12316 peptide synthase; Provisional

Probab=99.34  E-value=4.6e-12  Score=137.08  Aligned_cols=86  Identities=19%  Similarity=0.225  Sum_probs=83.2

Q ss_pred             cCCCceEEEeCCCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCchhHH
Q psy16164         74 VHYRLLFQIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTEVVK  153 (214)
Q Consensus        74 ~~pd~~al~~~~~~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~~~~~  153 (214)
                      .+|+++|+.+.  ++.+||+||.++++++|..|.+.|+++|++|+++++++++|+++++|++++|+++||++|.+|.  +
T Consensus      3069 ~~p~~~Av~~~--~~~lTY~eL~~~~~~lA~~L~~~gv~~~~~V~l~~~~s~~~iv~~lail~aGa~~vpld~~~p~--~ 3144 (5163)
T PRK12316       3069 RTPDAVALAFG--EQRLSYAELNRRANRLAHRLIERGVGPDVLVGVAVERSLEMVVGLLAILKAGGAYVPLDPEYPE--E 3144 (5163)
T ss_pred             hCCCCeeEeeC--CeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCCHHHHHHHHHHHHhCceeeecCCCCcH--H
Confidence            49999999986  7899999999999999999999999999999999999999999999999999999999999999  9


Q ss_pred             HHHHHhhcCc
Q psy16164        154 ELSQHCVGGL  163 (214)
Q Consensus       154 ~l~~~l~~s~  163 (214)
                      ++.+++.+++
T Consensus      3145 rl~~il~~~~ 3154 (5163)
T PRK12316       3145 RLAYMLEDSG 3154 (5163)
T ss_pred             HHHHHHHhcC
Confidence            9999999887

>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

Probab=99.33  E-value=7.5e-12  Score=111.10  Aligned_cols=86  Identities=8%  Similarity=-0.023  Sum_probs=81.0

Q ss_pred             cCCCceEEEeCCCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCchhHH
Q psy16164         74 VHYRLLFQIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTEVVK  153 (214)
Q Consensus        74 ~~pd~~al~~~~~~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~~~~~  153 (214)
                      .+|+++++.+.  ++.+||.||.+.+.++|..|.+.|+++|++|+++++|+.+|+++++||+++|++++|+++.++.  +
T Consensus        14 ~~p~~~~~~~~--~~~~t~~~l~~~~~~~a~~l~~~g~~~~~~v~~~~~~~~~~~~~~~a~~~~G~~~~~~~~~~~~--~   89 (503)
T PRK04813         14 TQPDFPAYDYL--GEKLTYGQLKEDSDALAAFIDSLKLPDKSPIIVFGHMSPEMLATFLGAVKAGHAYIPVDVSSPA--E   89 (503)
T ss_pred             hCCCceEEEeC--CcEEeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEecCCCCChH--H
Confidence            48999999875  7899999999999999999999999999999999999999999999999999999999999999  9


Q ss_pred             HHHHHhhcCc
Q psy16164        154 ELSQHCVGGL  163 (214)
Q Consensus       154 ~l~~~l~~s~  163 (214)
                      ++.+.++.++
T Consensus        90 ~~~~~~~~~~   99 (503)
T PRK04813         90 RIEMIIEVAK   99 (503)
T ss_pred             HHHHHHHhcC
Confidence            9988888654

>KOG1179|consensus

Probab=99.33  E-value=8.6e-12  Score=109.65  Aligned_cols=92  Identities=20%  Similarity=0.210  Sum_probs=86.1

Q ss_pred             cccccCCCceEEEeCCCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCc
Q psy16164         70 QPNVVHYRLLFQIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYT  149 (214)
Q Consensus        70 ~~~~~~pd~~al~~~~~~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~  149 (214)
                      .++.++|+++|+++.++++.+||+|+.+++.++|+.|...|++.||.|+++++|++|++.+++|..++|++..-+|++..
T Consensus        85 ~~vrr~p~k~aii~~~~~~~~Tf~e~~~~s~~~A~~~~~~~l~~GD~VAL~men~pefv~lWlGLaKlGv~tA~iNtNlR  164 (649)
T KOG1179|consen   85 SQVRRQPDKPAIIYEGPFQSLTFAELDARSNRVANYLHAEGLKAGDVVALLMENRPEFVALWLGLAKLGVITAFINTNLR  164 (649)
T ss_pred             HHHHhCCCccEEEEeCCCceeeHHHHHHHHHHHHHHHHHhhcccCCEEEEecCCChhHHHHHHhHHhhCceeeeeccccc
Confidence            44446999999999866789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHhhcCc
Q psy16164        150 EVVKELSQHCVGGL  163 (214)
Q Consensus       150 ~~~~~l~~~l~~s~  163 (214)
                      .  +.+.+.++-|+
T Consensus       165 ~--~~LlHsi~~s~  176 (649)
T KOG1179|consen  165 G--EPLLHSITVSG  176 (649)
T ss_pred             c--chhhhhhhhcC
Confidence            9  99999999766

>PRK12316 peptide synthase; Provisional

Probab=99.33  E-value=8.9e-12  Score=134.92  Aligned_cols=86  Identities=19%  Similarity=0.233  Sum_probs=83.1

Q ss_pred             cCCCceEEEeCCCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCchhHH
Q psy16164         74 VHYRLLFQIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTEVVK  153 (214)
Q Consensus        74 ~~pd~~al~~~~~~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~~~~~  153 (214)
                      .+|+++|+++.  ++.+||+||.+++.++|..|.+.|+++|++|+++++|+++++++++||+++|+++||++|.++.  +
T Consensus      2015 ~~p~~~A~~~~--~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~l~~~~s~~~~~~~lAil~aGa~~vpld~~~p~--~ 2090 (5163)
T PRK12316       2015 RAPEAIAVVFG--DQHLSYAELDSRANRLAHRLRARGVGPEVRVAIAAERSFELVVALLAVLKAGGAYVPLDPNYPA--E 2090 (5163)
T ss_pred             hCCCCeEEEcC--CCeEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHhhceEEeecCCCCCH--H
Confidence            59999999986  7799999999999999999999999999999999999999999999999999999999999999  9


Q ss_pred             HHHHHhhcCc
Q psy16164        154 ELSQHCVGGL  163 (214)
Q Consensus       154 ~l~~~l~~s~  163 (214)
                      ++.+++.+++
T Consensus      2091 rl~~il~~~~ 2100 (5163)
T PRK12316       2091 RLAYMLEDSG 2100 (5163)
T ss_pred             HHHHHHHhcC
Confidence            9999999877

>PRK06188 acyl-CoA synthetase; Validated

Probab=99.33  E-value=1.5e-11  Score=110.07  Aligned_cols=86  Identities=20%  Similarity=0.183  Sum_probs=81.9

Q ss_pred             cCCCceEEEeCCCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCchhHH
Q psy16164         74 VHYRLLFQIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTEVVK  153 (214)
Q Consensus        74 ~~pd~~al~~~~~~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~~~~~  153 (214)
                      .+|+++|+++.  +..+||.||.+.+.+++..|.+.|+++|++|+++++|+++++++++||+++|++++|++|.++.  +
T Consensus        24 ~~~~~~a~~~~--~~~~Ty~~l~~~~~~~a~~L~~~gv~~~~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~--~   99 (524)
T PRK06188         24 RYPDRPALVLG--DTRLTYGQLADRISRYIQAFEALGLGTGDAVALLSLNRPEVLMAIGAAQLAGLRRTALHPLGSL--D   99 (524)
T ss_pred             HCCCCeEEEEC--CCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCCEEEecccCCCH--H
Confidence            58999999986  6799999999999999999999999999999999999999999999999999999999999999  9


Q ss_pred             HHHHHhhcCc
Q psy16164        154 ELSQHCVGGL  163 (214)
Q Consensus       154 ~l~~~l~~s~  163 (214)
                      ++.+++..++
T Consensus       100 ~~~~~l~~~~  109 (524)
T PRK06188        100 DHAYVLEDAG  109 (524)
T ss_pred             HHHHHHHhcC
Confidence            9999998766

>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.32  E-value=1e-11  Score=105.36  Aligned_cols=89  Identities=20%  Similarity=0.216  Sum_probs=79.1

Q ss_pred             ccccCCCceEEEeCCCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCch
Q psy16164         71 PNVVHYRLLFQIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTE  150 (214)
Q Consensus        71 ~~~~~pd~~al~~~~~~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~~  150 (214)
                      .++.+||++|++++  ++.+||+||.++++++|.+|+++|+++||+|.+-+||..++.+++||.+++|.++|..-|....
T Consensus        37 ~A~~~pdriAv~d~--~~~~sY~eLdqr~d~LAa~l~~lGi~~Gd~vlvQLpN~~ef~~~~FALlrlGv~PVlALpsHr~  114 (542)
T COG1021          37 HAARYPDRIAVIDG--ERRLSYAELDQRADRLAAGLRRLGIKPGDTVLVQLPNVAEFYITFFALLRLGVAPVLALPSHRA  114 (542)
T ss_pred             HHhhcCCceEEecC--cccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCchHHHHHHHHHHHHcCcchhhccchhhH
Confidence            34469999999997  6789999999999999999999999999999999999999999999999999998877776666


Q ss_pred             hHHHHHHHhhcCc
Q psy16164        151 VVKELSQHCVGGL  163 (214)
Q Consensus       151 ~~~~l~~~l~~s~  163 (214)
                        .|+.+-...++
T Consensus       115 --~Ei~~f~~~~e  125 (542)
T COG1021         115 --SELGAFASQIE  125 (542)
T ss_pred             --HHHHHHHHhhc
Confidence              88877666544

>PRK08974 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.32  E-value=9.8e-12  Score=112.35  Aligned_cols=86  Identities=26%  Similarity=0.352  Sum_probs=81.0

Q ss_pred             cCCCceEEEeCCCCeeeeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCchhH
Q psy16164         74 VHYRLLFQIDAVTDITYTYDDILQKSLQLADALQ-KRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTEVV  152 (214)
Q Consensus        74 ~~pd~~al~~~~~~~~~Ty~el~~~~~~la~~L~-~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~~~~  152 (214)
                      .+|+++|+++.  ++.+||.||.+++.++|..|. +.|+++|++|+++++|+++++++++||+++|++++|++|.++.  
T Consensus        35 ~~p~~~a~~~~--~~~lTy~~l~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~--  110 (560)
T PRK08974         35 RYADQPAFINM--GEVMTFRKLEERSRAFAAYLQNGLGLKKGDRVALMMPNLLQYPIALFGILRAGMIVVNVNPLYTP--  110 (560)
T ss_pred             hCCCCceEEEC--CccccHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEeccCccCCH--
Confidence            58999999985  789999999999999999998 4899999999999999999999999999999999999999999  


Q ss_pred             HHHHHHhhcCc
Q psy16164        153 KELSQHCVGGL  163 (214)
Q Consensus       153 ~~l~~~l~~s~  163 (214)
                      +++.+++..++
T Consensus       111 ~~~~~~l~~~~  121 (560)
T PRK08974        111 RELEHQLNDSG  121 (560)
T ss_pred             HHHHHHHHhcC
Confidence            99999998765

>PRK07769 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.31  E-value=4.6e-11  Score=109.71  Aligned_cols=89  Identities=19%  Similarity=0.145  Sum_probs=76.4

Q ss_pred             cCCCceEEEeCC-------CCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEec-C
Q psy16164         74 VHYRLLFQIDAV-------TDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSI-N  145 (214)
Q Consensus        74 ~~pd~~al~~~~-------~~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl-~  145 (214)
                      .+|+++|+++.+       ..+.+||+||.+++.++|++|.+. +++||+|+++++|+++|+++++||+++|++++|+ +
T Consensus        33 ~~~~~~a~~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~-~~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~  111 (631)
T PRK07769         33 VRGDKLAYRFLDFSTERDGVARDLTWSQFGARNRAVGARLQQV-TKPGDRVAILAPQNLDYLIAFFGALYAGRIAVPLFD  111 (631)
T ss_pred             hCCCCeEEEEeccCCCCCCceeEeeHHHHHHHHHHHHHHHHHh-cCCCCEEEEEcCCChHHHHHHHHHHHcCCEEEeeCC
Confidence            589999998631       125899999999999999999986 8999999999999999999999999999999999 4


Q ss_pred             CCCchhHHHHHHHhhcCc
Q psy16164        146 PQYTEVVKELSQHCVGGL  163 (214)
Q Consensus       146 ~~~~~~~~~l~~~l~~s~  163 (214)
                      +..+...+++.+++++++
T Consensus       112 ~~~~~~~~~l~~~l~~~~  129 (631)
T PRK07769        112 PAEPGHVGRLHAVLDDCT  129 (631)
T ss_pred             CCccchHHHHHHHHHhCC
Confidence            555422278999998766

>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=99.30  E-value=1.3e-11  Score=108.75  Aligned_cols=86  Identities=20%  Similarity=0.175  Sum_probs=81.7

Q ss_pred             cCCCceEEEeCCCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCchhHH
Q psy16164         74 VHYRLLFQIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTEVVK  153 (214)
Q Consensus        74 ~~pd~~al~~~~~~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~~~~~  153 (214)
                      .+|+++|+.+.  ++.+||.||.+.++++|..|.+.|+.+|++|+++++|+++++++++||+++|++++|+++.+++  +
T Consensus        15 ~~~~~~a~~~~--~~~~ty~el~~~~~~~a~~L~~~g~~~~~~v~l~~~~~~~~~~~~la~~~~G~~~v~~~~~~~~--~   90 (458)
T PRK09029         15 VRPQAIALRLN--DEVLTWQQLCARIDQLAAGFAQQGVVEGSGVALRGKNSPETLLAYLALLQCGARVLPLNPQLPQ--P   90 (458)
T ss_pred             hCCCceeeecC--CcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHHHcCCEEeecCCCCCH--H
Confidence            58999999875  7899999999999999999999999999999999999999999999999999999999999999  9


Q ss_pred             HHHHHhhcCc
Q psy16164        154 ELSQHCVGGL  163 (214)
Q Consensus       154 ~l~~~l~~s~  163 (214)
                      ++.+++.+++
T Consensus        91 ~~~~~~~~~~  100 (458)
T PRK09029         91 LLEELLPSLT  100 (458)
T ss_pred             HHHHHHHhcC
Confidence            9999998766

>TIGR02262 benz_CoA_lig benzoate-CoA ligase family

Probab=99.30  E-value=2.6e-11  Score=108.15  Aligned_cols=86  Identities=19%  Similarity=0.230  Sum_probs=81.9

Q ss_pred             cCCCceEEEeCCCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCchhHH
Q psy16164         74 VHYRLLFQIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTEVVK  153 (214)
Q Consensus        74 ~~pd~~al~~~~~~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~~~~~  153 (214)
                      .+||++|+++.  +..+||.|+.++++++|..|.+.|+++|++|+++++|+++|+++++||+++|++++|+++.++.  +
T Consensus        17 ~~p~~~a~~~~--~~~~ty~~l~~~~~~~a~~L~~~g~~~g~~v~l~~~~~~~~~~~~~a~~~~G~~~v~l~~~~~~--~   92 (508)
T TIGR02262        17 GRGGKTAFIDD--ISSLSYGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPIAFLGAIRAGIVPVALNTLLTA--D   92 (508)
T ss_pred             ccCCceEEEeC--CceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEeeccCCCCH--H
Confidence            48999999885  7899999999999999999999999999999999999999999999999999999999999999  9


Q ss_pred             HHHHHhhcCc
Q psy16164        154 ELSQHCVGGL  163 (214)
Q Consensus       154 ~l~~~l~~s~  163 (214)
                      ++.++++.++
T Consensus        93 ~l~~~~~~~~  102 (508)
T TIGR02262        93 DYAYMLEDSR  102 (508)
T ss_pred             HHHHHHHhcC
Confidence            9999998766

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases.

>PRK07768 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.30  E-value=9.5e-12  Score=112.01  Aligned_cols=81  Identities=12%  Similarity=0.224  Sum_probs=74.5

Q ss_pred             cCCCceEEEeCCCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCchhHH
Q psy16164         74 VHYRLLFQIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTEVVK  153 (214)
Q Consensus        74 ~~pd~~al~~~~~~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~~~~~  153 (214)
                      ..|+.+++.+.+.+..+||.||..++.++|++|.+.|+++||+|+++++|+++|+++++||+++|++++|+++..+.  +
T Consensus        14 ~~~~~~~~~~~~~~~~~ty~el~~~v~~~a~~L~~~g~~~gd~V~l~~~~~~~~~~~~la~~~~g~v~~~l~~~~~~--~   91 (545)
T PRK07768         14 TSPRGMVTGEPDAPVRHTWGEVHERARRIAGGLAAAGVGPGDAVAVLAGAPVEIAPTAQGLWMRGASLTMLHQPTPR--T   91 (545)
T ss_pred             CCCcceEEecCCCceEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHHcCccccccCCCCCc--c
Confidence            47899999877667799999999999999999999999999999999999999999999999999999999998886  5


Q ss_pred             HHH
Q psy16164        154 ELS  156 (214)
Q Consensus       154 ~l~  156 (214)
                      ++.
T Consensus        92 ~~~   94 (545)
T PRK07768         92 DLA   94 (545)
T ss_pred             hhH
Confidence            443

>KOG1176|consensus

Probab=99.26  E-value=4.2e-11  Score=107.53  Aligned_cols=99  Identities=19%  Similarity=0.297  Sum_probs=83.6

Q ss_pred             CCCc-eEEEeCCC-CeeeeHHHHHHHHHHHHHHHHHcC--CCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCch
Q psy16164         75 HYRL-LFQIDAVT-DITYTYDDILQKSLQLADALQKRG--YRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTE  150 (214)
Q Consensus        75 ~pd~-~al~~~~~-~~~~Ty~el~~~~~~la~~L~~~G--l~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~~  150 (214)
                      ++++ +.+++... |+.+||.|+.+++.++|.+|.++|  +++||+|++++||++++..+++||+..|++..|+||.+.+
T Consensus        29 ~~~~~~~~i~~~~~g~~~T~~e~~~~~~r~A~~L~~~~~~i~~gDvV~i~~pNs~~~~~~~la~~~~Ga~~~~~Np~~~~  108 (537)
T KOG1176|consen   29 YLDRNTSLVYQDSDGRELTYSELHDRCRRLASALSELGLGIKKGDVVGILAPNTPEFVELALAVPMAGAVLNPLNPRLTA  108 (537)
T ss_pred             cccCcceEEEecCCCcEEcHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEEcCCCHHHHHHHHHHHHcCccccccCcccCH
Confidence            4444 66666532 689999999999999999999775  8889999999999999999999999999999999999999


Q ss_pred             hHHHHHHHhhcCc--eeecchHHHhhh
Q psy16164        151 VVKELSQHCVGGL--ELQQKRVEIGAL  175 (214)
Q Consensus       151 ~~~~l~~~l~~s~--~~~~~~~~~~~~  175 (214)
                        .++.+.+.+++  .+.+.......+
T Consensus       109 --~ei~~~~~~s~~kiif~d~~~~~~i  133 (537)
T KOG1176|consen  109 --SEIAKQLKDSKPKLIFVDEDFYDKI  133 (537)
T ss_pred             --HHHHHHHHhcCCeEEEEcCchHHHH
Confidence              99999999877  444544444444

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.26  E-value=3.8e-11  Score=116.63  Aligned_cols=86  Identities=20%  Similarity=0.171  Sum_probs=80.5

Q ss_pred             cCCCceEEEeCCCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCchhHH
Q psy16164         74 VHYRLLFQIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTEVVK  153 (214)
Q Consensus        74 ~~pd~~al~~~~~~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~~~~~  153 (214)
                      .+|+++|+++. .++++||+|+.++++++|+.|.+ ++++||+|+++++|+++++++++||+++|++++|+|+.+++  +
T Consensus       627 ~~p~~~a~~~~-~~~~~Ty~el~~~~~~~a~~L~~-~~~~g~~V~i~~~n~~~~~~~~la~~~~G~v~v~l~~~~~~--~  702 (1146)
T PRK08633        627 RNWSRLAVADS-TGGELSYGKALTGALALARLLKR-ELKDEENVGILLPPSVAGALANLALLLAGKVPVNLNYTASE--A  702 (1146)
T ss_pred             hcCCCcEEEcC-CCCcCcHHHHHHHHHHHHHHHHH-hCCCCCeEEEECCCchHHHHHHHHHHHcCCEEEEeCCCcCH--H
Confidence            58999999875 46799999999999999999987 58999999999999999999999999999999999999999  9


Q ss_pred             HHHHHhhcCc
Q psy16164        154 ELSQHCVGGL  163 (214)
Q Consensus       154 ~l~~~l~~s~  163 (214)
                      ++.+++++++
T Consensus       703 ~~~~~l~~~~  712 (1146)
T PRK08633        703 ALKSAIEQAQ  712 (1146)
T ss_pred             HHHHHHHHcC
Confidence            9999999776

>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional

Probab=99.25  E-value=5.9e-11  Score=105.95  Aligned_cols=80  Identities=23%  Similarity=0.278  Sum_probs=75.3

Q ss_pred             EEEeCCCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCchhHHHHHHHh
Q psy16164         80 FQIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTEVVKELSQHC  159 (214)
Q Consensus        80 al~~~~~~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~~~~~~l~~~l  159 (214)
                      |++++  ++.+||.||.++++++|++|.+.|+++|++|+++++|+++++++++|++++|++++|+++.++.  +++.+.+
T Consensus         4 ~~~~~--~~~~Ty~el~~~~~~la~~l~~~g~~~g~~V~v~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~--~~~~~~l   79 (509)
T PRK12406          4 TIISG--DRRRSFDELAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWHFKP--EEIAYIL   79 (509)
T ss_pred             EEEEC--CeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCcccCH--HHHHHHH
Confidence            45554  7899999999999999999999999999999999999999999999999999999999999999  9999999


Q ss_pred             hcCc
Q psy16164        160 VGGL  163 (214)
Q Consensus       160 ~~s~  163 (214)
                      +.++
T Consensus        80 ~~~~   83 (509)
T PRK12406         80 EDSG   83 (509)
T ss_pred             hccC
Confidence            9766

>PRK09192 acyl-CoA synthetase; Validated

Probab=99.24  E-value=1.3e-10  Score=105.66  Aligned_cols=94  Identities=14%  Similarity=0.144  Sum_probs=75.8

Q ss_pred             hccccc-CCCceEEEeCCC--CeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecC
Q psy16164         69 IQPNVV-HYRLLFQIDAVT--DITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSIN  145 (214)
Q Consensus        69 ~~~~~~-~pd~~al~~~~~--~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~  145 (214)
                      +...+. +|+. ++++...  .+.+||.||..++.++|.+|.+.|+++||+|+++++|+++|+++++||+++|++++|++
T Consensus        27 ~~~~~~~~~~~-~~~~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~gi~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~i~  105 (579)
T PRK09192         27 LDYAALGEAGM-NFYDRRGQLEEALPYQTLRARAEAGARRLLALGLKPGDRVALIAETDGDFVEAFFACQYAGLVPVPLP  105 (579)
T ss_pred             HHHhhccCCce-EEEecCCCEEEEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCchhHHHHHHHHHHcCCeeEecc
Confidence            334444 4544 4444322  26799999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCch-----hHHHHHHHhhcCc
Q psy16164        146 PQYTE-----VVKELSQHCVGGL  163 (214)
Q Consensus       146 ~~~~~-----~~~~l~~~l~~s~  163 (214)
                      +.++.     ..+++.++++.++
T Consensus       106 ~~~~~~~~~~~~~~l~~~i~~~~  128 (579)
T PRK09192        106 LPMGFGGRESYIAQLRGMLASAQ  128 (579)
T ss_pred             CCcccccchHHHHHHHHHHHhcC
Confidence            75431     1278899998765

>PRK10946 entE enterobactin synthase subunit E; Provisional

Probab=99.24  E-value=4.7e-11  Score=107.48  Aligned_cols=89  Identities=18%  Similarity=0.187  Sum_probs=78.5

Q ss_pred             cccccCCCceEEEeCCCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCc
Q psy16164         70 QPNVVHYRLLFQIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYT  149 (214)
Q Consensus        70 ~~~~~~pd~~al~~~~~~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~  149 (214)
                      ...+. ||++|+++.  ++.+||.||.+++.++|..|.+.|+++|++|+++++|+++|+++++||+++|+++++..+..+
T Consensus        32 ~~~a~-p~~~a~~~~--~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~v~~~n~~~~~~~~la~~~~G~v~v~~~~~~~  108 (536)
T PRK10946         32 TRHAA-SDAIAVICG--ERQFSYRELNQASDNLACSLRRQGIKPGDTALVQLGNVAEFYITFFALLKLGVAPVNALFSHQ  108 (536)
T ss_pred             HHhhC-CCCeEEEeC--CCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCChHHHHHHHHHHHHcCeEEecCCcccc
Confidence            33334 999999986  778999999999999999999999999999999999999999999999999998777776666


Q ss_pred             hhHHHHHHHhhcCc
Q psy16164        150 EVVKELSQHCVGGL  163 (214)
Q Consensus       150 ~~~~~l~~~l~~s~  163 (214)
                      .  .++...+.+++
T Consensus       109 ~--~~~~~~~~~~~  120 (536)
T PRK10946        109 R--SELNAYASQIE  120 (536)
T ss_pred             H--HHHHHHHhhcC
Confidence            6  78887777655

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.23  E-value=4.4e-11  Score=116.50  Aligned_cols=86  Identities=21%  Similarity=0.206  Sum_probs=77.9

Q ss_pred             cCC-CceEEEeCCCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCchhH
Q psy16164         74 VHY-RLLFQIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTEVV  152 (214)
Q Consensus        74 ~~p-d~~al~~~~~~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~~~~  152 (214)
                      ++| ++.++.+. +++++||+|+.++++++|+.|++ |+++||+|+++++|+++++++++||+++|++++|+|+.+++  
T Consensus       643 ~~~~~~~ai~~~-~~~~~Ty~el~~~~~~lA~~L~~-g~~~gd~V~i~~~n~~~~~~~~la~~~~G~v~v~l~~~~~~--  718 (1140)
T PRK06814        643 IHGFKKLAVEDP-VNGPLTYRKLLTGAFVLGRKLKK-NTPPGENVGVMLPNANGAAVTFFALQSAGRVPAMINFSAGI--  718 (1140)
T ss_pred             HcCCCCeEeECC-CCCccCHHHHHHHHHHHHHHHHh-cCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEcCCCCCH--
Confidence            465 56777653 36789999999999999999976 99999999999999999999999999999999999999999  


Q ss_pred             HHHHHHhhcCc
Q psy16164        153 KELSQHCVGGL  163 (214)
Q Consensus       153 ~~l~~~l~~s~  163 (214)
                      +++.+++++++
T Consensus       719 ~~l~~~l~~~~  729 (1140)
T PRK06814        719 ANILSACKAAQ  729 (1140)
T ss_pred             HHHHHHHHHcC
Confidence            99999999776

>PRK08276 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.19  E-value=1.2e-10  Score=103.71  Aligned_cols=76  Identities=28%  Similarity=0.321  Sum_probs=73.1

Q ss_pred             CCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCchhHHHHHHHhhcCc
Q psy16164         86 TDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTEVVKELSQHCVGGL  163 (214)
Q Consensus        86 ~~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~~~~~~l~~~l~~s~  163 (214)
                      .+..+||.||.+.+.++|++|.+.|+++||+|+++++|+++++++++||+++|++++|+++.++.  +++.+++.+++
T Consensus         8 ~~~~~ty~el~~~v~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~--~~~~~~~~~~~   83 (502)
T PRK08276          8 SGEVVTYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTPINWHLTA--AEIAYIVDDSG   83 (502)
T ss_pred             CCcEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHhcCcEEEecccccCH--HHHHHHHhcCC
Confidence            57899999999999999999999999999999999999999999999999999999999999999  99999998766

>PRK07787 acyl-CoA synthetase; Validated

Probab=99.17  E-value=1.5e-10  Score=102.54  Aligned_cols=82  Identities=12%  Similarity=0.063  Sum_probs=76.1

Q ss_pred             ccCCCceEEEeCCCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCchhH
Q psy16164         73 VVHYRLLFQIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTEVV  152 (214)
Q Consensus        73 ~~~pd~~al~~~~~~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~~~~  152 (214)
                      ++.++++|+++.  ++++||.||.++++++|..|+     ++|+|+++++|+++|+++++||+++|++++|+++.++.  
T Consensus        11 ~~~~~~~a~~~~--~~~~Ty~el~~~~~~~a~~L~-----~~~~V~l~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~--   81 (471)
T PRK07787         11 AAADIADAVRIG--GRVLSRSDLAGAATAVAERVA-----GARRVAVLATPTLATVLAVVGALIAGVPVVPVPPDSGV--   81 (471)
T ss_pred             cccCCceEEEeC--CcEEEHHHHHHHHHHHHHHhc-----cCCEEEEECCCCHHHHHHHHHHHhcCcEEeecCCCCCh--
Confidence            457899999885  789999999999999999996     46999999999999999999999999999999999999  


Q ss_pred             HHHHHHhhcCc
Q psy16164        153 KELSQHCVGGL  163 (214)
Q Consensus       153 ~~l~~~l~~s~  163 (214)
                      +++.+++.+++
T Consensus        82 ~~l~~~l~~~~   92 (471)
T PRK07787         82 AERRHILADSG   92 (471)
T ss_pred             HHHHHHHHhcC
Confidence            99999998776

>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated

Probab=99.11  E-value=4.6e-10  Score=100.91  Aligned_cols=70  Identities=24%  Similarity=0.281  Sum_probs=62.6

Q ss_pred             cCCCceEEEeCCCC--eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCC
Q psy16164         74 VHYRLLFQIDAVTD--ITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINP  146 (214)
Q Consensus        74 ~~pd~~al~~~~~~--~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~  146 (214)
                      .+|+++|+++.+.+  +++||+||.++++++|..|.+.  ++||+|+++++|+++|+++++||+++|++++ +++
T Consensus        14 ~~~~~~a~~~~~~~~~~~~ty~el~~~~~~lA~~L~~~--~~g~~V~l~~~~~~e~~~~~la~~~~G~~~~-~~~   85 (525)
T PRK05851         14 ASGRDLVVLDRESGLWRRHPWPEVHGRAENVAARLLDR--DRPGAVGLVGEPTVELVAAIQGAWLAGAAVS-ILP   85 (525)
T ss_pred             CCCCceEEeCCCCCcceeecHHHHHHHHHHHHHHHHhc--CCCCeEEEEcCCCHHHHHHHHHHHHcCCCCc-CCC
Confidence            48999999987433  6899999999999999999987  8999999999999999999999999999864 454

>PRK08308 acyl-CoA synthetase; Validated

Probab=99.11  E-value=3.9e-10  Score=98.32  Aligned_cols=78  Identities=17%  Similarity=0.184  Sum_probs=71.2

Q ss_pred             EEeCCCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCchhHHHHHHHhh
Q psy16164         81 QIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTEVVKELSQHCV  160 (214)
Q Consensus        81 l~~~~~~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~~~~~~l~~~l~  160 (214)
                      +++.  ++++||.||.++++++|..|. .|+++|++|+++++|+++++.+++|++++|++++|+++..+.  +++.+++.
T Consensus         2 ~~~~--~~~~ty~el~~~~~~~a~~l~-~~~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~--~~~~~~~~   76 (414)
T PRK08308          2 LIVN--DEEYSKSDFDLRLQRYEEMEQ-FQEAAGNRFAVCLKDPFDIITLVFFLKEKGASVLPIHPDTPK--EAAIRMAK   76 (414)
T ss_pred             eEec--CceecHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCChHHHHHHHHHHHCCeEEEecCCCCCH--HHHHHHHH
Confidence            4443  679999999999999999985 689999999999999999999999999999999999999999  88888887


Q ss_pred             cCc
Q psy16164        161 GGL  163 (214)
Q Consensus       161 ~s~  163 (214)
                      +++
T Consensus        77 ~~~   79 (414)
T PRK08308         77 RAG   79 (414)
T ss_pred             hCC
Confidence            655

>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed

Probab=99.10  E-value=3.4e-10  Score=100.22  Aligned_cols=73  Identities=22%  Similarity=0.192  Sum_probs=69.5

Q ss_pred             eeeHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCchhHHHHHHHhhcCc
Q psy16164         89 TYTYDDILQKSLQLADALQKRGY-RRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTEVVKELSQHCVGGL  163 (214)
Q Consensus        89 ~~Ty~el~~~~~~la~~L~~~Gl-~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~~~~~~l~~~l~~s~  163 (214)
                      .+.|+||.+++.++|.+|.+.|+ .+|++|+++++|+++++++++||+++|++++|+||.++.  .++.+++++++
T Consensus        19 ~~~~~el~~~~~~~a~~L~~~g~~~~~~~V~i~~~n~~e~~~~~~A~~~~G~~~vpl~~~~~~--~~~~~~~~~~~   92 (452)
T PRK07445         19 GYNSQRFYQLAQQLYLQLQQLATPRTPPKILLAESDPLQFLAAFLAAVAAGCPVFLANPHWGQ--QEWQQVLNLVQ   92 (452)
T ss_pred             ecChHHHHHHHHHHHHHHHHhcCCCCCCeEEEecCCCHHHHHHHHHHHHhCcEEEeeccCCCH--HHHHHHHHhcC
Confidence            47899999999999999999988 579999999999999999999999999999999999999  99999999776

>TIGR01923 menE O-succinylbenzoate-CoA ligase

Probab=99.08  E-value=4.6e-10  Score=97.99  Aligned_cols=71  Identities=28%  Similarity=0.426  Sum_probs=68.4

Q ss_pred             eHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCchhHHHHHHHhhcCc
Q psy16164         91 TYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTEVVKELSQHCVGGL  163 (214)
Q Consensus        91 Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~~~~~~l~~~l~~s~  163 (214)
                      ||+|+.++++++|+.|.+.|+++||+|+++++|+++++++++||+++|++++|+++.++.  +++..++.+++
T Consensus         1 Ty~~l~~~~~~~a~~l~~~g~~~gd~v~i~~~~~~~~~~~~la~~~~G~~~~~~~~~~~~--~~~~~~~~~~~   71 (436)
T TIGR01923         1 TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTE--NERTNQLEDLD   71 (436)
T ss_pred             CHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHhcCcEEEecCcCCCH--HHHHHHHHhcC
Confidence            799999999999999999999999999999999999999999999999999999999999  99998888666

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.

>KOG1180|consensus

Probab=99.02  E-value=8.3e-09  Score=90.99  Aligned_cols=98  Identities=13%  Similarity=0.190  Sum_probs=83.2

Q ss_pred             eeeeHHHHHHHHHHHHHHHHHcCCCCCCE-EEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCchhHHHHHHHhhcCc--e
Q psy16164         88 ITYTYDDILQKSLQLADALQKRGYRRGDI-VSICSENRLDYPVLIVAASLLGITVSSINPQYTEVVKELSQHCVGGL--E  164 (214)
Q Consensus        88 ~~~Ty~el~~~~~~la~~L~~~Gl~~gd~-V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~~~~~~l~~~l~~s~--~  164 (214)
                      .++||.|+..++..+|++|.++|+++++. +.|+++.+.+|+++++||++.+..+|.++.++++  +.+.|-+++++  .
T Consensus        88 ~w~sy~ev~~~~~~~gsGL~~lG~k~~e~k~~iFa~TraeWm~ta~gC~~q~ipvVT~Y~TLGe--eal~hsl~Et~~~~  165 (678)
T KOG1180|consen   88 KWMSYNEVYERVHNFGSGLVKLGLKPKETKIAIFAETRAEWMITAQGCFSQNIPVVTAYATLGE--EALIHSLNETESTA  165 (678)
T ss_pred             eeecHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecchHHHHHHHHHHHhcCCeEEEEehhcCh--hhhhhhhccccceE
Confidence            58999999999999999999999997776 9999999999999999999999999999999999  99999999776  4


Q ss_pred             eecchHHHhhhhh--hhcccccccc
Q psy16164        165 LQQKRVEIGALAE--ETNSLLKKNV  187 (214)
Q Consensus       165 ~~~~~~~~~~~~~--~~~~~l~~ii  187 (214)
                      +.+....+.++..  ...+.++.+|
T Consensus       166 i~T~~~LL~kl~~~l~~~~~vk~II  190 (678)
T KOG1180|consen  166 IFTDSELLPKLKAPLKQAKTVKHII  190 (678)
T ss_pred             EEeCHHHHHHHHHHHhccCceeEEE
Confidence            5555444443332  3345677777

>COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.97  E-value=2.9e-09  Score=97.83  Aligned_cols=90  Identities=18%  Similarity=0.252  Sum_probs=84.2

Q ss_pred             cccccCCCceEEEeCCCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCc
Q psy16164         70 QPNVVHYRLLFQIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYT  149 (214)
Q Consensus        70 ~~~~~~pd~~al~~~~~~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~  149 (214)
                      .++...|+..|+.+.  +.++||+|+..++.++|..|...|+.+++.|+++.+++++++++.+|++++|+.++|++|.++
T Consensus       235 ~~a~~~p~~~a~~~~--~~~lty~el~~~a~~la~~l~~~g~~~~~~V~i~~~rs~~~i~~~l~ilkaG~~yvP~d~~~P  312 (642)
T COG1020         235 EQAATTPDAVALVRG--GQQLTYAELDARANRLARLLISLGVGPGETVAILADRSLELVVALLAVLKAGAAYVPLDPLYP  312 (642)
T ss_pred             HHHHhCCCceeEecC--CCcccHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCHHHHHHHHHHHhcCCeEecCCCCCh
Confidence            334469999999886  789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHhhcCc
Q psy16164        150 EVVKELSQHCVGGL  163 (214)
Q Consensus       150 ~~~~~l~~~l~~s~  163 (214)
                      .  +++.+++.++.
T Consensus       313 ~--~r~~~~l~~~~  324 (642)
T COG1020         313 A--ERLAYILEDSR  324 (642)
T ss_pred             H--HHHHHHHhhcC
Confidence            9  99999999887

>TIGR01733 AA-adenyl-dom amino acid adenylation domain

Probab=98.95  E-value=3.5e-09  Score=91.47  Aligned_cols=71  Identities=24%  Similarity=0.328  Sum_probs=68.1

Q ss_pred             eHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCchhHHHHHHHhhcCc
Q psy16164         91 TYDDILQKSLQLADALQK-RGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTEVVKELSQHCVGGL  163 (214)
Q Consensus        91 Ty~el~~~~~~la~~L~~-~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~~~~~~l~~~l~~s~  163 (214)
                      ||.|+.+.+.++|..|.+ .|+++||+|+++++|+++++++++||++.|++++|+++.++.  +++.+.++.++
T Consensus         1 t~~~l~~~~~~~a~~l~~~~g~~~gd~v~l~~~n~~~~~~~~~a~~~~G~~~v~~~~~~~~--~~~~~~l~~~~   72 (408)
T TIGR01733         1 TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYPA--ERLAFILEDAG   72 (408)
T ss_pred             CHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEcCCCCCH--HHHHHHHHhcC
Confidence            799999999999999998 899999999999999999999999999999999999999999  99999988766

This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group.

>KOG1175|consensus

Probab=98.94  E-value=5.3e-09  Score=94.71  Aligned_cols=87  Identities=23%  Similarity=0.303  Sum_probs=78.7

Q ss_pred             CCCceEEEeCCC----CeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCch
Q psy16164         75 HYRLLFQIDAVT----DITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTE  150 (214)
Q Consensus        75 ~pd~~al~~~~~----~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~~  150 (214)
                      .++.++.++...    ...+||.|+.+.+.++|..|.+.|+++||+|++++|+.++++++++||.++|++.+++...+++
T Consensus        78 ~~~~~a~~~~~~~~~~~~~~t~~el~~~v~~~a~~l~~~g~~kGD~V~~~mPm~~e~~ia~lA~~r~Gai~~~v~~~fs~  157 (626)
T KOG1175|consen   78 GGDKVAIIFEGNEGGDTEVWTYKELLDQVVRLANVLRKCGLKKGDTVAIYMPMIPEAVIAMLACARIGAIHSSVFAGFSA  157 (626)
T ss_pred             CCCCcEEEEEecCCCceEEEEHHHHHHHHHHHHHHHHhcCCCCCcEEEEeccCChHHHHHHHHHhhcCeEEEEeeccCCH
Confidence            467888765421    2358999999999999999998899999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHhhcCc
Q psy16164        151 VVKELSQHCVGGL  163 (214)
Q Consensus       151 ~~~~l~~~l~~s~  163 (214)
                        .++++++.+++
T Consensus       158 --~~l~~Rl~~~~  168 (626)
T KOG1175|consen  158 --KELLDRLQDSK  168 (626)
T ss_pred             --HHHHHHHHhcC
Confidence              99999999877

>KOG3628|consensus

Probab=98.63  E-value=1.6e-07  Score=88.21  Aligned_cols=86  Identities=17%  Similarity=0.230  Sum_probs=72.0

Q ss_pred             HHHHhh-cccccCCCceEEEeCC----CCeeeeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEeCCCCcHHHHHHHHHHc
Q psy16164         64 FIFQYI-QPNVVHYRLLFQIDAV----TDITYTYDDILQKSLQLADALQKR-GYRRGDIVSICSENRLDYPVLIVAASLL  137 (214)
Q Consensus        64 ~~~~~~-~~~~~~pd~~al~~~~----~~~~~Ty~el~~~~~~la~~L~~~-Gl~~gd~V~i~~~n~~~~~~~~lA~~~~  137 (214)
                      .+.+.+ .+++++||.+|+....    ++..+||+++..++.+++..|.+. -+++||.|+++.+++.|++++++||+.+
T Consensus       771 ~ile~Lq~R~a~tp~~~a~~~~n~~~~~~~~~Tw~~f~krva~i~~~l~~k~~lk~Gd~V~Lmy~~sie~vaa~~~Cly~  850 (1363)
T KOG3628|consen  771 TILEILQWRAAKTPDHIAFTTLNARGATKKTLTWAQFHKRVARIAEYLQDKGHLKAGDHVVLMYPPSIEFVAAIYACLYL  850 (1363)
T ss_pred             HHHHHHHHHhhcCCCceEEEEeccCCcccceeEHHHHHHHHHHHHHHHHhcccCCCCCeEEEEcCChHHHHHHHHHHHhc
Confidence            334444 4555799999987532    245899999999999999999866 5999999999999999999999999999


Q ss_pred             CCEEEecCCCCc
Q psy16164        138 GITVSSINPQYT  149 (214)
Q Consensus       138 G~i~vpl~~~~~  149 (214)
                      |++++|+-|.-.
T Consensus       851 GliPIpv~p~~~  862 (1363)
T KOG3628|consen  851 GLIPIPVPPPHA  862 (1363)
T ss_pred             CeeeeccCCccH
Confidence            999999977543

>PLN03051 acyl-activating enzyme; Provisional

Probab=97.56  E-value=8.1e-05  Score=66.63  Aligned_cols=41  Identities=20%  Similarity=0.213  Sum_probs=39.5

Q ss_pred             eCCCCcHHHHHHHHHHcCCEEEecCCCCchhHHHHHHHhhcCc
Q psy16164        121 SENRLDYPVLIVAASLLGITVSSINPQYTEVVKELSQHCVGGL  163 (214)
Q Consensus       121 ~~n~~~~~~~~lA~~~~G~i~vpl~~~~~~~~~~l~~~l~~s~  163 (214)
                      ++|+++++++++||+++|+++||+|+.++.  +++.|++++++
T Consensus         1 ~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~--~el~~~l~~~~   41 (499)
T PLN03051          1 MPMTVDAVIIYLAIVLAGCVVVSVADSFSA--KEIATRLDISG   41 (499)
T ss_pred             CCCcHHHHHHHHHHHHcCCEEEeeCCCCCH--HHHHHHHHhcC
Confidence            589999999999999999999999999999  99999999877

>KOG1178|consensus

Probab=95.36  E-value=0.009  Score=57.72  Aligned_cols=62  Identities=29%  Similarity=0.324  Sum_probs=60.4

Q ss_pred             eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCc
Q psy16164         88 ITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYT  149 (214)
Q Consensus        88 ~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~  149 (214)
                      .++||+.....+..+++.|...|...|+.|++++..+.++++..++++++|..++|++|.++
T Consensus        68 ~~~t~r~~~~~~n~~~q~l~~~~~~~~~~v~i~~~~~~d~~v~v~~~~~~g~~~~~idp~~~  129 (1032)
T KOG1178|consen   68 DSFTYRLIRLLSNIIAQFLVSLGSLRGTTVAIYMLPSVDLVVSVFAVLAAGLTFLPIDPSWP  129 (1032)
T ss_pred             cchhhhhhhcccchhHHHhhhcccccCceEEEeccCcCCeeeeeeehhhcceEEEEecCCCc
Confidence            47999999999999999999999999999999999999999999999999999999999999

>KOG3628|consensus

Probab=95.27  E-value=0.052  Score=52.42  Aligned_cols=84  Identities=20%  Similarity=0.315  Sum_probs=70.2

Q ss_pred             CCCceEEEeCC-CC--eeeeHHHHHHHHHHHHH-HHHHcCCCCCCEEEEEeCCC--CcHHHHHHHHHHcCCEEEecCCCC
Q psy16164         75 HYRLLFQIDAV-TD--ITYTYDDILQKSLQLAD-ALQKRGYRRGDIVSICSENR--LDYPVLIVAASLLGITVSSINPQY  148 (214)
Q Consensus        75 ~pd~~al~~~~-~~--~~~Ty~el~~~~~~la~-~L~~~Gl~~gd~V~i~~~n~--~~~~~~~lA~~~~G~i~vpl~~~~  148 (214)
                      ++...|.++-+ .|  ..+||..+..++.++|. .|.+-|++++|+|.++...+  .++++..++|...|.+.+|+++.+
T Consensus       107 s~~~ta~i~id~kgk~~~~twdkl~~rA~k~a~~~l~ksgl~~~~~vvL~Y~~~e~ie~~isl~gc~l~g~~~vp~~e~~  186 (1363)
T KOG3628|consen  107 SATSTAHICIDKKGKATSITWDKLLNRAEKVAHVELNKSGLKPGDRVVLYYRKCEAIEFLISLFGCFLLGIVAVPLSELS  186 (1363)
T ss_pred             CCCCceEEEEcCCCceeeeeHHHHHHHHHhhccHHhhccCCCCCcEEEEEEEhhhhhHHhhhhccccccceeeccchhhh
Confidence            55566765432 23  47999999999999999 67778999999999998865  799999999999999999999988


Q ss_pred             chhHHHHHHHhh
Q psy16164        149 TEVVKELSQHCV  160 (214)
Q Consensus       149 ~~~~~~l~~~l~  160 (214)
                      +.  +++.-.++
T Consensus       187 s~--~el~~i~~  196 (1363)
T KOG3628|consen  187 SS--EELKDIVN  196 (1363)
T ss_pred             hh--hhhhcccC
Confidence            88  88766665

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]

Probab=94.37  E-value=0.55  Score=41.57  Aligned_cols=84  Identities=24%  Similarity=0.109  Sum_probs=61.8

Q ss_pred             eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCC--CcHHHHHHHHHHcCCEEEecCCCCchhHHHHHHHhhcCc--e
Q psy16164         89 TYTYDDILQKSLQLADALQKRGYRRGDIVSICSENR--LDYPVLIVAASLLGITVSSINPQYTEVVKELSQHCVGGL--E  164 (214)
Q Consensus        89 ~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~--~~~~~~~lA~~~~G~i~vpl~~~~~~~~~~l~~~l~~s~--~  164 (214)
                      .+|..|+...+..+|+.|...|..+||+|..+..-+  ..-+...+|+.++|+.+.|+++...   +.....+.+-+  +
T Consensus       109 ~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~~~g~~---~~~~~l~~df~~tv  185 (438)
T COG1541         109 GYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPISGGNT---ERQLELMKDFKPTV  185 (438)
T ss_pred             ecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEccCCccH---HHHHHHHHhcCCcE
Confidence            589999999999999999999999999988776611  1226789999999999999999665   34444444433  4


Q ss_pred             eecchHHHhhh
Q psy16164        165 LQQKRVEIGAL  175 (214)
Q Consensus       165 ~~~~~~~~~~~  175 (214)
                      +......+..+
T Consensus       186 I~~tps~~l~l  196 (438)
T COG1541         186 IAATPSYLLYL  196 (438)
T ss_pred             EEEChHHHHHH
Confidence            54444443333

>TIGR03335 F390_ftsA coenzyme F390 synthetase

Probab=83.60  E-value=8.5  Score=34.11  Aligned_cols=58  Identities=21%  Similarity=0.393  Sum_probs=45.9

Q ss_pred             eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCc--HHHHHHHHHHcCCEEEecCC
Q psy16164         89 TYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLD--YPVLIVAASLLGITVSSINP  146 (214)
Q Consensus        89 ~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~--~~~~~lA~~~~G~i~vpl~~  146 (214)
                      .+|..++...+...++.+...|+.+||++.++.+-...  .....+++...|+..+|...
T Consensus       105 ~~T~~dl~~~~~~~~r~~~~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~~~  164 (445)
T TIGR03335       105 FLTWDDWKRYAEKYARSFVSQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPEGK  164 (445)
T ss_pred             eecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcCCc
Confidence            47889998888888888888899999999998875543  23456788899999887653

This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	214
2d1q_A	548	Crystal Structure Of The Thermostable Japanese Fire		1e-05
2d1s_A	548	Crystal Structure Of The Thermostable Japanese Fire		1e-05
2d1t_A	548	Crystal Structure Of The Thermostable Japanese Fire		1e-05
3iep_A	551	Firefly Luciferase Apo Structure (P41 Form) Length		6e-05
1ba3_A	550	Firefly Luciferase In Complex With Bromoform Length		6e-05
4g36_A	555	Photinus Pyralis Luciferase In The Adenylate-Formin		7e-05

>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With Mgatp Length = 548

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 39/67 (58%)
Query: 83  DAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVS 142
           +AVT + Y+Y + L+KS  L  ALQ  G      +++CSEN  ++ + ++A   +G+ V+
Sbjct: 46  NAVTGVDYSYAEYLEKSXXLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVA 105
Query: 143 SINPQYT 149
             N  YT
Sbjct: 106 PTNEIYT 112

>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 39/67 (58%)
Query: 83  DAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVS 142
           +AVT + Y+Y + L+KS  L  ALQ  G      +++CSEN  ++ + ++A   +G+ V+
Sbjct: 46  NAVTGVDYSYAEYLEKSCXLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVA 105
Query: 143 SINPQYT 149
             N  YT
Sbjct: 106 PTNEIYT 112

>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Red-Color Emission S286n Mutant Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 39/67 (58%)
Query: 83  DAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVS 142
           +AVT + Y+Y + L+KS  L  ALQ  G      +++CSEN  ++ + ++A   +G+ V+
Sbjct: 46  NAVTGVDYSYAEYLEKSCXLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVA 105
Query: 143 SINPQYT 149
             N  YT
Sbjct: 106 PTNEIYT 112

>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form) Length = 551

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 20/68 (29%), Positives = 39/68 (57%)
Query: 83  DAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVS 142
           DA  ++  TY +  + S++LA+A+++ G      + +CSEN L + + ++ A  +G+ V+
Sbjct: 44  DAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVA 103
Query: 143 SINPQYTE 150
             N  Y E
Sbjct: 104 PANDIYNE 111

>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform Length = 550

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 20/68 (29%), Positives = 39/68 (57%)
Query: 83  DAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVS 142
           DA  ++  TY +  + S++LA+A+++ G      + +CSEN L + + ++ A  +G+ V+
Sbjct: 44  DAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVA 103
Query: 143 SINPQYTE 150
             N  Y E
Sbjct: 104 PANDIYNE 111

>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming Conformation Bound To Dlsa Length = 555

Iteration: 1
 Score = 43.9 bits (102), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 20/68 (29%), Positives = 39/68 (57%)
Query: 83  DAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVS 142
           DA  ++  TY +  + S++LA+A+++ G      + +CSEN L + + ++ A  +G+ V+
Sbjct: 49  DAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVA 108
Query: 143 SINPQYTE 150
             N  Y E
Sbjct: 109 PANDIYNE 116

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	214
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	1e-20
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	4e-20
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	1e-19
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	3e-19
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	9e-14
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	7e-12
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	4e-11
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	6e-11
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	2e-10
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	3e-10
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	2e-09
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	2e-09
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	5e-09
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	2e-08
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	1e-07
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	7e-05
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	2e-04
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	3e-04
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	4e-04
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	7e-04

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550

 Score = 88.1 bits (219), Expect = 1e-20
 Identities = 20/87 (22%), Positives = 45/87 (51%)

Query: 64  FIFQYIQPNVVHYRLLFQIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSEN 123
            + + ++   +    +   DA  ++  TY +  + S++LA+A+++ G      + +CSEN
Sbjct: 25  QLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSEN 84

Query: 124 RLDYPVLIVAASLLGITVSSINPQYTE 150
            L + + ++ A  +G+ V+  N  Y E
Sbjct: 85  SLQFFMPVLGALFIGVAVAPANDIYNE 111

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548

 Score = 86.9 bits (216), Expect = 4e-20
 Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 1/87 (1%)

Query: 64  FIFQYIQPNVVHYRLLFQIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSEN 123
            + +Y++       + F  +AVT + Y+Y + L+KS  L  ALQ  G      +++CSEN
Sbjct: 28  QLRKYMERYAKLGAIAF-TNAVTGVDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSEN 86

Query: 124 RLDYPVLIVAASLLGITVSSINPQYTE 150
             ++ + ++A   +G+ V+  N  YT 
Sbjct: 87  CEEFFIPVIAGLFIGVGVAPTNEIYTL 113

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979

 Score = 85.8 bits (213), Expect = 1e-19
 Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 2/75 (2%)

Query: 82  IDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITV 141
           I+  T   YTY D+   S Q+A    K G  + D+V +   N  ++ +  +AAS  G T 
Sbjct: 81  INGPTGHVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATA 140

Query: 142 SSINPQYTEVVKELS 156
           ++ NP +T    E++
Sbjct: 141 TAANPFFTP--AEIA 153

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536

 Score = 84.5 bits (210), Expect = 3e-19
 Identities = 20/77 (25%), Positives = 40/77 (51%), Gaps = 2/77 (2%)

Query: 82  IDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITV 141
           I+      YTY D+   + ++A  L K G ++GD++ +   +  ++ +  + AS  G  +
Sbjct: 42  INGANGDVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAII 101

Query: 142 SSINPQYTEVVKELSQH 158
           ++ NP  T    EL++H
Sbjct: 102 TAANPFSTP--AELAKH 116

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549

 Score = 68.4 bits (168), Expect = 9e-14
 Identities = 18/62 (29%), Positives = 33/62 (53%)

Query: 89  TYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQY 148
           +  + +I + + +LA  + ++G R+G+ V +C  N +DY + I A   +  T   INP Y
Sbjct: 52  SMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYVMTIYALWRVAATPVPINPMY 111

Query: 149 TE 150
             
Sbjct: 112 KS 113

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503

 Score = 62.6 bits (153), Expect = 7e-12
 Identities = 17/69 (24%), Positives = 34/69 (49%)

Query: 82  IDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITV 141
           I+       +Y +++ ++ ++A+ L  RG + GD V+  +E  ++  VL +A    G   
Sbjct: 21  IETAAGDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVY 80

Query: 142 SSINPQYTE 150
             +N  YT 
Sbjct: 81  LPLNTAYTL 89

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529

 Score = 60.7 bits (148), Expect = 4e-11
 Identities = 12/72 (16%), Positives = 28/72 (38%), Gaps = 2/72 (2%)

Query: 87  DITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINP 146
             + TY ++ +++ + A AL+  G    + + +   + +  PV  + A   G+     N 
Sbjct: 46  TGSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPVVANT 105

Query: 147 QYTEVVKELSQH 158
             T    +    
Sbjct: 106 LLTP--ADYVYM 115

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517

 Score = 59.9 bits (146), Expect = 6e-11
 Identities = 18/68 (26%), Positives = 32/68 (47%)

Query: 82  IDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITV 141
           ++  TD+  TY  +   + + AD L   G  +GD V++   N +++  L   A+ LG   
Sbjct: 36  VEPSTDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVA 95

Query: 142 SSINPQYT 149
             IN +  
Sbjct: 96  VPINTRLA 103

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509

 Score = 58.3 bits (142), Expect = 2e-10
 Identities = 19/63 (30%), Positives = 33/63 (52%)

Query: 87  DITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINP 146
            +  T+ D L ++ +LA  L + G   GD V+I S+N  +   LI A +L+G  +  +N 
Sbjct: 29  GVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGAILLPVNY 88

Query: 147 QYT 149
           +  
Sbjct: 89  RLN 91

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504

 Score = 58.0 bits (141), Expect = 3e-10
 Identities = 14/68 (20%), Positives = 28/68 (41%)

Query: 82  IDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITV 141
                 +  T+ ++  +   +A  L   G R    V++ + N  D  + I+A   LG   
Sbjct: 22  AVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVP 81

Query: 142 SSINPQYT 149
           + +NP+  
Sbjct: 82  ALLNPRLK 89

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617

 Score = 55.3 bits (134), Expect = 2e-09
 Identities = 13/73 (17%), Positives = 31/73 (42%), Gaps = 2/73 (2%)

Query: 87  DITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINP 146
           +   +Y ++ Q +  LA +L+++G + G+   +   N  +  +   A   LG+       
Sbjct: 48  ERQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLGVAPVLALF 107

Query: 147 QYTEVVKELSQHC 159
            +     EL+ + 
Sbjct: 108 SHQR--SELNAYA 118

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539

 Score = 55.2 bits (134), Expect = 2e-09
 Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 2/70 (2%)

Query: 83  DAVTD--ITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGIT 140
            A+T     ++Y ++  ++ +LA   QK G ++ D V +   N  ++  +I A   LG  
Sbjct: 42  IAITCGNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGAL 101

Query: 141 VSSINPQYTE 150
                P +  
Sbjct: 102 PVFALPSHRS 111

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544

 Score = 54.1 bits (131), Expect = 5e-09
 Identities = 15/79 (18%), Positives = 34/79 (43%), Gaps = 4/79 (5%)

Query: 83  DAVT--DITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGIT 140
            A+   +   +Y ++ + S  LA  L ++G  +GD   +   N  ++ ++  A    G+ 
Sbjct: 47  LAIICGERQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGVV 106

Query: 141 VSSINPQYTEVVKELSQHC 159
           V +    + +   EL+   
Sbjct: 107 VLNALYSHRQ--YELNAFI 123

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501

 Score = 52.6 bits (127), Expect = 2e-08
 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 3/64 (4%)

Query: 87  DITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINP 146
             +YTY ++  ++  LA  L      +   V +  +N +   +LI A  L  I ++ IN 
Sbjct: 24  QESYTYQNLYCEASLLAKRL---KAYQQSRVGLYIDNSIQSIILIHACWLANIEIAMINT 80

Query: 147 QYTE 150
           + T 
Sbjct: 81  RLTP 84

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505

 Score = 50.3 bits (121), Expect = 1e-07
 Identities = 12/64 (18%), Positives = 28/64 (43%), Gaps = 5/64 (7%)

Query: 87  DITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINP 146
           + + TY ++   +   A  +          V++ +   ++  V +VAA L G+    +NP
Sbjct: 46  ERSLTYAELAAAAGATAGRI-----GGAGRVAVWATPAMETGVAVVAALLAGVAAVPLNP 100

Query: 147 QYTE 150
           +  +
Sbjct: 101 KSGD 104

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590

 Score = 41.9 bits (99), Expect = 7e-05
 Identities = 16/70 (22%), Positives = 25/70 (35%), Gaps = 3/70 (4%)

Query: 70  QPNVVHYRLLFQIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPV 129
            PN      L   +   + T TY+ + Q +  +A  LQ  G + GD V +     L    
Sbjct: 24  SPNKKSCTFL---NKELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQ 80

Query: 130 LIVAASLLGI 139
             +     G 
Sbjct: 81  AFLGCLYAGC 90

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580

 Score = 41.0 bits (97), Expect = 2e-04
 Identities = 13/62 (20%), Positives = 25/62 (40%)

Query: 89  TYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQY 148
            +T+ D+   S + A+   K G  +GD V +  ++R D+   ++    LG          
Sbjct: 86  IFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCMLGLHKLGAIAVPATHML 145

Query: 149 TE 150
             
Sbjct: 146 KT 147

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570

 Score = 39.5 bits (93), Expect = 4e-04
 Identities = 12/63 (19%), Positives = 27/63 (42%), Gaps = 1/63 (1%)

Query: 89  TYTYDDILQKSLQLADAL-QKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQ 147
            + + ++ + S Q A+ L    G +RGD V++      ++ ++I+     G+       Q
Sbjct: 73  MWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQ 132

Query: 148 YTE 150
              
Sbjct: 133 MKS 135

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541

 Score = 39.0 bits (92), Expect = 7e-04
 Identities = 9/30 (30%), Positives = 16/30 (53%)

Query: 90  YTYDDILQKSLQLADALQKRGYRRGDIVSI 119
            TY ++ Q++ +L   L+  G   GD V+ 
Sbjct: 48  TTYAEVYQRARRLMGGLRALGVGVGDRVAT 77

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	214
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	99.69
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	99.69
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	99.68
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	99.68
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	99.67
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	99.67
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	99.65
4gr5_A	570	Non-ribosomal peptide synthetase; MBTH-like domain	99.65
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	99.65
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	99.65
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	99.65
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	99.65
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	99.64
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	99.64
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	99.64
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	99.63
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	99.63
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	99.63
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	99.63
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	99.62
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	99.61
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	99.61
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	99.6
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	99.6
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	99.59
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	99.57
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	99.56
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	99.56
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	99.56
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	99.52
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	99.41
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	84.47
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	83.27
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	82.1

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*

Probab=99.69  E-value=1.8e-16  Score=141.33  Aligned_cols=90  Identities=23%  Similarity=0.344  Sum_probs=85.5

Q ss_pred             cccCCCceEEEeCCCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCchh
Q psy16164         72 NVVHYRLLFQIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTEV  151 (214)
Q Consensus        72 ~~~~pd~~al~~~~~~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~~~  151 (214)
                      +..+||++|++++.+++++||+||.++++++|.+|++.|+++||+|+++++|+++|+++++||+++|++++|+||.++. 
T Consensus        32 a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~la~~~~Gav~vpl~~~~~~-  110 (536)
T 3ni2_A           32 LSNHSSKPCLINGANGDVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTP-  110 (536)
T ss_dssp             GGGSTTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTCCH-
T ss_pred             hhcCCCceEEEECCCCCEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHhCCEEeccCCCCCH-
Confidence            3359999999997667899999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             HHHHHHHhhcCc
Q psy16164        152 VKELSQHCVGGL  163 (214)
Q Consensus       152 ~~~l~~~l~~s~  163 (214)
                       +++.+++++++
T Consensus       111 -~~l~~~l~~~~  121 (536)
T 3ni2_A          111 -AELAKHAKASR  121 (536)
T ss_dssp             -HHHHHHHHHHT
T ss_pred             -HHHHHHHHhcC
Confidence             99999999776

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}

Probab=99.69  E-value=2.7e-16  Score=140.48  Aligned_cols=105  Identities=22%  Similarity=0.275  Sum_probs=92.0

Q ss_pred             ccccccchhhHHHHHHHhhcccccCCCceEEEeCCCC------eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCC
Q psy16164         51 VFATCCMISGLILFIFQYIQPNVVHYRLLFQIDAVTD------ITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENR  124 (214)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~pd~~al~~~~~~------~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~  124 (214)
                      ...+..++.+++....+      .+||++|+++.+.+      +++||+||.++++++|.+|++.|+++||+|+++++|+
T Consensus        14 ~~~~~~~l~~~l~~~a~------~~p~~~A~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~   87 (549)
T 3g7s_A           14 LYYPKISLADRIDAAAE------KFGEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNS   87 (549)
T ss_dssp             CCCCCCCTTHHHHHHHH------HHTTSEEEEEESSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSS
T ss_pred             CCcCCCCHHHHHHHHHH------hCCCceEEEeCCCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCC
Confidence            34455677776544432      58999999987421      7899999999999999999999999999999999999


Q ss_pred             CcHHHHHHHHHHcCCEEEecCCCCchhHHHHHHHhhcCc
Q psy16164        125 LDYPVLIVAASLLGITVSSINPQYTEVVKELSQHCVGGL  163 (214)
Q Consensus       125 ~~~~~~~lA~~~~G~i~vpl~~~~~~~~~~l~~~l~~s~  163 (214)
                      ++|+++++||+++|+++||+||.++.  +++.+++++++
T Consensus        88 ~~~~~~~lA~~~~G~~~vpl~~~~~~--~~l~~il~~~~  124 (549)
T 3g7s_A           88 IDYVMTIYALWRVAATPVPINPMYKS--FELEHILNDSE  124 (549)
T ss_dssp             HHHHHHHHHHHHTTCEEEECCTTCCH--HHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhCCEEEccCCCCCH--HHHHHHHHhcC
Confidence            99999999999999999999999999  99999999877

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A

Probab=99.68  E-value=3.3e-16  Score=139.05  Aligned_cols=88  Identities=26%  Similarity=0.323  Sum_probs=83.5

Q ss_pred             cCCCceEEEeCCCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCchhHH
Q psy16164         74 VHYRLLFQIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTEVVK  153 (214)
Q Consensus        74 ~~pd~~al~~~~~~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~~~~~  153 (214)
                      .+|+++|+++...+.++||+||.++++++|.+|++.|+++||+|+++++|+++|+++++||+++|+++||+||.++.  +
T Consensus        28 ~~p~~~A~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~--~  105 (517)
T 3r44_A           28 VSPRLQAYVEPSTDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLAA--P  105 (517)
T ss_dssp             HSTTSEEEEEGGGTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTSCH--H
T ss_pred             hCCCCeEEEeCCcCceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHHHHHHHHhCcEEEecCcccCH--H
Confidence            59999999997445599999999999999999999999999999999999999999999999999999999999999  9


Q ss_pred             HHHHHhhcCc
Q psy16164        154 ELSQHCVGGL  163 (214)
Q Consensus       154 ~l~~~l~~s~  163 (214)
                      ++.+++++++
T Consensus       106 ~l~~~l~~~~  115 (517)
T 3r44_A          106 EVSFILSDSG  115 (517)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHhcC
Confidence            9999999766

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0

Probab=99.68  E-value=2.6e-16  Score=139.24  Aligned_cols=86  Identities=24%  Similarity=0.266  Sum_probs=83.2

Q ss_pred             cCCCceEEEeCCCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCchhHH
Q psy16164         74 VHYRLLFQIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTEVVK  153 (214)
Q Consensus        74 ~~pd~~al~~~~~~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~~~~~  153 (214)
                      .+||++|+++.  ++++||+||.+++.++|.+|++.|+++||+|+++++|+++|+++++||+++|++++|++|.++.  +
T Consensus        18 ~~pd~~Al~~~--~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl~~~~~~--~   93 (509)
T 3ivr_A           18 LFPDRTAFMVD--GVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGAILLPVNYRLNA--D   93 (509)
T ss_dssp             HSTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCEEEECCTTSCH--H
T ss_pred             HCCCceEEEEC--CcEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEEecCCCCCH--H
Confidence            59999999996  7899999999999999999999999999999999999999999999999999999999999999  9


Q ss_pred             HHHHHhhcCc
Q psy16164        154 ELSQHCVGGL  163 (214)
Q Consensus       154 ~l~~~l~~s~  163 (214)
                      ++.+++++++
T Consensus        94 ~l~~~l~~~~  103 (509)
T 3ivr_A           94 EIAFVLGDGA  103 (509)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHhcC
Confidence            9999999776

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A

Probab=99.67  E-value=1.8e-16  Score=141.75  Aligned_cols=103  Identities=22%  Similarity=0.328  Sum_probs=88.6

Q ss_pred             ccccchhhHHHHHHHhhcccccCCCceEEE---eCCCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHH
Q psy16164         53 ATCCMISGLILFIFQYIQPNVVHYRLLFQI---DAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPV  129 (214)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~pd~~al~---~~~~~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~  129 (214)
                      .+..++++++....+      .+|+++|++   +...++++||+||.++++++|.+|++.|+++||+|+++++|+++|++
T Consensus        17 ~~~~tl~~~l~~~a~------~~p~~~a~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~   90 (550)
T 3rix_A           17 LEDGTAGEQLHKAMK------RYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFM   90 (550)
T ss_dssp             CCCSCHHHHHHHHHH------HHHTSTTCEEEEETTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHH
T ss_pred             cccCCHHHHHHHHHH------hCCCCceEEEeeecCCCcEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccHHH
Confidence            344567766544433      466776654   65557899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCEEEecCCCCchhHHHHHHHhhcCc
Q psy16164        130 LIVAASLLGITVSSINPQYTEVVKELSQHCVGGL  163 (214)
Q Consensus       130 ~~lA~~~~G~i~vpl~~~~~~~~~~l~~~l~~s~  163 (214)
                      +++||+++|++++|+|+.++.  +++.+++++++
T Consensus        91 ~~lA~~~~Gav~vpl~~~~~~--~~l~~~l~~~~  122 (550)
T 3rix_A           91 PVLGALFIGVAVAPANDIYNE--RELLNSMNISQ  122 (550)
T ss_dssp             HHHHHHHHTCEEEECCTTCCH--HHHHHHHHHHC
T ss_pred             HHHHHHHcCCEEeecCCcCCH--HHHHHHHHhcC
Confidence            999999999999999999999  99999999766

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*

Probab=99.67  E-value=1.6e-16  Score=140.51  Aligned_cols=88  Identities=19%  Similarity=0.203  Sum_probs=84.0

Q ss_pred             cCCCceEEEeCCCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCchhHH
Q psy16164         74 VHYRLLFQIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTEVVK  153 (214)
Q Consensus        74 ~~pd~~al~~~~~~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~~~~~  153 (214)
                      .+||++|+++...++++||+||.++++++|.+|++.|+++||+|+++++|+++|+++++||+++|++++|+||.++.  +
T Consensus        14 ~~p~~~a~~~~~~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~--~   91 (504)
T 1t5h_X           14 RAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKS--A   91 (504)
T ss_dssp             HCTTSEEEEETTTTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHHTCEEEEECTTSCH--H
T ss_pred             hCCCceEEEEcCCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecCCccCh--H
Confidence            59999999986557899999999999999999999999999999999999999999999999999999999999999  9


Q ss_pred             HHHHHhhcCc
Q psy16164        154 ELSQHCVGGL  163 (214)
Q Consensus       154 ~l~~~l~~s~  163 (214)
                      ++.+++++++
T Consensus        92 ~l~~~l~~~~  101 (504)
T 1t5h_X           92 ELAELIKRGE  101 (504)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHhhcC
Confidence            9999999776

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*

Probab=99.65  E-value=6.2e-16  Score=138.12  Aligned_cols=99  Identities=18%  Similarity=0.151  Sum_probs=89.3

Q ss_pred             ccchhhHHHHHHHhhcccccCCCceEEEeCCCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHH
Q psy16164         55 CCMISGLILFIFQYIQPNVVHYRLLFQIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAA  134 (214)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~pd~~al~~~~~~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~  134 (214)
                      +.++.+++....+      .+||++|++++  ++++||+||.++++++|.+|++.|+++||+|+++++|+++|+++++||
T Consensus        29 ~~tl~~~l~~~a~------~~p~~~Al~~~--~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~  100 (544)
T 3o83_A           29 DQPLTRILTVGVQ------SHPHSLAIICG--ERQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFAL  100 (544)
T ss_dssp             CCCTTHHHHHHHH------HCTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHH------hCCCceEEEcC--CCceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHH
Confidence            3456665444332      59999999996  889999999999999999999999999999999999999999999999


Q ss_pred             HHcCCEEEecCCCCchhHHHHHHHhhcCc
Q psy16164        135 SLLGITVSSINPQYTEVVKELSQHCVGGL  163 (214)
Q Consensus       135 ~~~G~i~vpl~~~~~~~~~~l~~~l~~s~  163 (214)
                      +++|++++|+++.++.  +++.+++++++
T Consensus       101 ~~~Gav~vpl~~~~~~--~~l~~~l~~~~  127 (544)
T 3o83_A          101 LKAGVVVLNALYSHRQ--YELNAFIKQIQ  127 (544)
T ss_dssp             HHHTCEEEECCTTCCH--HHHHHHHHHHC
T ss_pred             HHhCcEEecCCCCCCH--HHHHHHHHhcC
Confidence            9999999999999999  99999999766

>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A

Probab=99.65  E-value=4.2e-16  Score=139.89  Aligned_cols=86  Identities=19%  Similarity=0.203  Sum_probs=83.0

Q ss_pred             cCCCceEEEeCCCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCchhHH
Q psy16164         74 VHYRLLFQIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTEVVK  153 (214)
Q Consensus        74 ~~pd~~al~~~~~~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~~~~~  153 (214)
                      .+||++|+++.  ++++||+||.++++++|.+|++.|+++||+|+++++|+++|+++++||+++|+++||+||.++.  +
T Consensus        87 ~~pd~~A~~~~--~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~--~  162 (570)
T 4gr5_A           87 RAPDAVALLHE--ADELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAVLKAGGGYTMLDPQFPV--E  162 (570)
T ss_dssp             HCTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEECCTTSCH--H
T ss_pred             HCCCCeEEECC--CCcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHHCCEEEEcCCCChH--H
Confidence            59999999996  7899999999999999999999999999999999999999999999999999999999999999  9


Q ss_pred             HHHHHhhcCc
Q psy16164        154 ELSQHCVGGL  163 (214)
Q Consensus       154 ~l~~~l~~s~  163 (214)
                      ++.+++++++
T Consensus       163 ~l~~~l~~~~  172 (570)
T 4gr5_A          163 RLALSLEDTG  172 (570)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHhcC
Confidence            9999999766

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*

Probab=99.65  E-value=8.3e-16  Score=139.59  Aligned_cols=86  Identities=17%  Similarity=0.077  Sum_probs=83.2

Q ss_pred             cCCCceEEEeCCCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCchhHH
Q psy16164         74 VHYRLLFQIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTEVVK  153 (214)
Q Consensus        74 ~~pd~~al~~~~~~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~~~~~  153 (214)
                      .+||++|+++.  ++++||+||.++++++|.+|++.|+++||+|+++++|+++|+++++||+++|+++||+||.++.  +
T Consensus        39 ~~Pd~~Av~~~--~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~lailkaGa~~vpld~~~p~--~  114 (620)
T 4dg8_A           39 LHPHREAIRDR--FGSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLLAILLSGHHYLYIDLKQPA--A  114 (620)
T ss_dssp             HCTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHHHHHHHTTCEEEECCTTSCH--H
T ss_pred             hCCCCeEEEcC--CCcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEeeCccChH--H
Confidence            59999999996  7899999999999999999999999999999999999999999999999999999999999999  9


Q ss_pred             HHHHHhhcCc
Q psy16164        154 ELSQHCVGGL  163 (214)
Q Consensus       154 ~l~~~l~~s~  163 (214)
                      ++.+++++++
T Consensus       115 ~l~~il~~~~  124 (620)
T 4dg8_A          115 WNAELCRQVD  124 (620)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHhCC
Confidence            9999999776

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}

Probab=99.65  E-value=5.5e-16  Score=139.63  Aligned_cols=95  Identities=16%  Similarity=0.161  Sum_probs=84.8

Q ss_pred             Hhhcccc-cCCCceEEEeCC---CCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEE
Q psy16164         67 QYIQPNV-VHYRLLFQIDAV---TDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVS  142 (214)
Q Consensus        67 ~~~~~~~-~~pd~~al~~~~---~~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~v  142 (214)
                      +.+++.+ .+||++|+++.+   .++++||+||.++++++|.+|+++|+++||+|+++++|+++|+++++||+++|++++
T Consensus        60 ~~l~~~a~~~pd~~Al~~~~~~g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~~~~lA~~~~Gav~v  139 (580)
T 3etc_A           60 DVVDVYARDSPEKLAMIWCDDYGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCMLGLHKLGAIAV  139 (580)
T ss_dssp             HTHHHHHHHCTTCEEEEEEESSSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHHHHHHHHHHHTCEEE
T ss_pred             HHHHHHHhhCCCCEEEEEEcCCCCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhCCEEEE
Confidence            3344333 499999998632   246899999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCchhHHHHHHHhhcCc
Q psy16164        143 SINPQYTEVVKELSQHCVGGL  163 (214)
Q Consensus       143 pl~~~~~~~~~~l~~~l~~s~  163 (214)
                      |+++.++.  +++.+++++++
T Consensus       140 pl~~~~~~--~~l~~~l~~~~  158 (580)
T 3etc_A          140 PATHMLKT--RDIVYRIEKAG  158 (580)
T ss_dssp             ECCTTCCH--HHHHHHHHHHT
T ss_pred             eCCccCCH--HHHHHHHHhcC
Confidence            99999999  99999999766

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1

Probab=99.65  E-value=9.7e-16  Score=137.53  Aligned_cols=86  Identities=19%  Similarity=0.200  Sum_probs=82.8

Q ss_pred             cCCCceEEEeCCCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCchhHH
Q psy16164         74 VHYRLLFQIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTEVVK  153 (214)
Q Consensus        74 ~~pd~~al~~~~~~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~~~~~  153 (214)
                      .+||++|+++.  ++++||+||.+++.++|.+|.+.|+++||+|+++++|+++|+++++||+++|+++||+|+.++.  +
T Consensus        51 ~~p~~~Al~~~--~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~--~  126 (563)
T 1amu_A           51 KRPNNVAIVCE--NEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYVPIDIEYPK--E  126 (563)
T ss_dssp             HCTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEECCTTSCH--H
T ss_pred             HCCCCeEEEeC--CceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEeCCCCcH--H
Confidence            59999999986  7899999999999999999999999999999999999999999999999999999999999999  9


Q ss_pred             HHHHHhhcCc
Q psy16164        154 ELSQHCVGGL  163 (214)
Q Consensus       154 ~l~~~l~~s~  163 (214)
                      ++.+++++++
T Consensus       127 ~l~~il~~~~  136 (563)
T 1amu_A          127 RIQYILDDSQ  136 (563)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHhcC
Confidence            9999999766

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}

Probab=99.65  E-value=1.2e-15  Score=135.70  Aligned_cols=90  Identities=17%  Similarity=0.174  Sum_probs=83.9

Q ss_pred             cccccCCCceEEEeCCCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCc
Q psy16164         70 QPNVVHYRLLFQIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYT  149 (214)
Q Consensus        70 ~~~~~~pd~~al~~~~~~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~  149 (214)
                      +..+.+||++|+++.  ++++||+||.++++++|.+|++.|+++||+|+++++|+++|+++++||+++|+++||+|+.++
T Consensus        31 ~~~~~~p~~~A~~~~--~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~  108 (529)
T 2v7b_A           31 RLNETRAGKTAYIDD--TGSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPVVANTLLT  108 (529)
T ss_dssp             HHTGGGTTSEEEECS--SCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHHHHHHHHHHTCEEEECCTTCC
T ss_pred             HhhhccCCceEEEeC--CCCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCceEEecCcccC
Confidence            333338999999986  689999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHhhcCc
Q psy16164        150 EVVKELSQHCVGGL  163 (214)
Q Consensus       150 ~~~~~l~~~l~~s~  163 (214)
                      .  +++.+++++++
T Consensus       109 ~--~~l~~~l~~~~  120 (529)
T 2v7b_A          109 P--ADYVYMLTHSH  120 (529)
T ss_dssp             H--HHHHHHHHHHT
T ss_pred             H--HHHHHHHhccC
Confidence            9  99999999766

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*

Probab=99.64  E-value=5.3e-16  Score=137.36  Aligned_cols=86  Identities=8%  Similarity=0.001  Sum_probs=83.1

Q ss_pred             cCCCceEEEeCCCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCchhHH
Q psy16164         74 VHYRLLFQIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTEVVK  153 (214)
Q Consensus        74 ~~pd~~al~~~~~~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~~~~~  153 (214)
                      .+||++|+++.  ++++||+||.++++++|.+|.+.|+++||+|+++++|+++|+++++||+++|++++|+|+.++.  +
T Consensus        13 ~~p~~~A~~~~--~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~~~~G~v~vpl~~~~~~--~   88 (512)
T 3fce_A           13 ETPDQTAFVWR--DAKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGCVKAGHAYIPVDLSIPA--D   88 (512)
T ss_dssp             HSTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHHHHTTCCEEEEETTSCH--H
T ss_pred             HCCCceEEEeC--CceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEeeCCCCcH--H
Confidence            59999999996  7899999999999999999999999999999999999999999999999999999999999999  9


Q ss_pred             HHHHHhhcCc
Q psy16164        154 ELSQHCVGGL  163 (214)
Q Consensus       154 ~l~~~l~~s~  163 (214)
                      ++.+++++++
T Consensus        89 ~l~~il~~~~   98 (512)
T 3fce_A           89 RVQRIAENSG   98 (512)
T ss_dssp             HHHHHHHHSC
T ss_pred             HHHHHHHhcC
Confidence            9999999776

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*

Probab=99.64  E-value=2.4e-15  Score=134.20  Aligned_cols=88  Identities=19%  Similarity=0.159  Sum_probs=82.2

Q ss_pred             cCCCceEEEeC--CCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCchh
Q psy16164         74 VHYRLLFQIDA--VTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTEV  151 (214)
Q Consensus        74 ~~pd~~al~~~--~~~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~~~  151 (214)
                      .+||++|+++.  ..++++||+||.++++++|.+|++.|+++||+|+++++|+++|+++++||+++|+++||+||.++. 
T Consensus        30 ~~p~~~a~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~-  108 (541)
T 1v25_A           30 LFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSP-  108 (541)
T ss_dssp             HSTTCEEEEECTTSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEECCTTSCH-
T ss_pred             hCCCceEEEEecCCCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCcEEEecCcccCH-
Confidence            59999999852  135789999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             HHHHHHHhhcCc
Q psy16164        152 VKELSQHCVGGL  163 (214)
Q Consensus       152 ~~~l~~~l~~s~  163 (214)
                       +++.+++++++
T Consensus       109 -~~l~~~l~~~~  119 (541)
T 1v25_A          109 -KEIAYILNHAE  119 (541)
T ss_dssp             -HHHHHHHHHHT
T ss_pred             -HHHHHHHHhCC
Confidence             99999999766

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*

Probab=99.64  E-value=8.1e-16  Score=136.36  Aligned_cols=86  Identities=10%  Similarity=0.001  Sum_probs=83.2

Q ss_pred             cCCCceEEEeCCCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCchhHH
Q psy16164         74 VHYRLLFQIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTEVVK  153 (214)
Q Consensus        74 ~~pd~~al~~~~~~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~~~~~  153 (214)
                      .+||++|+.+.  ++++||+||.++++++|.+|.+.|+++||+|+++++|+++|+++++||+++|++++|+|+.++.  +
T Consensus        16 ~~p~~~a~~~~--~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~vpl~~~~~~--~   91 (521)
T 3l8c_A           16 TQADFPVYDCL--GERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVALTKSGHAYIPVDVHSAP--E   91 (521)
T ss_dssp             HSTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHHHHHTTCCEEEEETTSCH--H
T ss_pred             HCCCCcceecC--CCeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEecCccccH--H
Confidence            59999999986  8899999999999999999999999999999999999999999999999999999999999999  9


Q ss_pred             HHHHHhhcCc
Q psy16164        154 ELSQHCVGGL  163 (214)
Q Consensus       154 ~l~~~l~~s~  163 (214)
                      ++.+++++++
T Consensus        92 ~l~~il~~~~  101 (521)
T 3l8c_A           92 RILAIIEIAK  101 (521)
T ss_dssp             HHHHHHHHSC
T ss_pred             HHHHHHHhCC
Confidence            9999999777

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A

Probab=99.63  E-value=1.4e-15  Score=135.63  Aligned_cols=86  Identities=19%  Similarity=0.163  Sum_probs=83.0

Q ss_pred             cCCCceEEEeCCCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCchhHH
Q psy16164         74 VHYRLLFQIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTEVVK  153 (214)
Q Consensus        74 ~~pd~~al~~~~~~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~~~~~  153 (214)
                      .+||++|+++.  ++++||+||.++++++|.+|++.|+++||+|+++++|+++|+++++||+++|+++||++|.++.  +
T Consensus        37 ~~p~~~A~~~~--~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl~~~~~~--~  112 (539)
T 1mdb_A           37 KYGDRIAITCG--NTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRS--S  112 (539)
T ss_dssp             HHTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHHHTCEEEECCTTCCH--H
T ss_pred             HCCCCEEEEeC--CCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCeEEecCCCCCCH--H
Confidence            58999999986  7899999999999999999999999999999999999999999999999999999999999999  9


Q ss_pred             HHHHHhhcCc
Q psy16164        154 ELSQHCVGGL  163 (214)
Q Consensus       154 ~l~~~l~~s~  163 (214)
                      ++.+++++++
T Consensus       113 ~l~~~l~~~~  122 (539)
T 1mdb_A          113 EITYFCEFAE  122 (539)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHhCC
Confidence            9999999777

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}

Probab=99.63  E-value=1.3e-15  Score=144.64  Aligned_cols=89  Identities=26%  Similarity=0.334  Sum_probs=85.1

Q ss_pred             ccCCCceEEEeCCCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCchhH
Q psy16164         73 VVHYRLLFQIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTEVV  152 (214)
Q Consensus        73 ~~~pd~~al~~~~~~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~~~~  152 (214)
                      ..+||++|+++..+++++||+||.++++++|.+|++.|+++||+|+++++|+++|+++++||+++|+++||+||.+++  
T Consensus        72 ~~~pd~~Al~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~e~~v~~lA~~~~Ga~~vpl~~~~~~--  149 (979)
T 3tsy_A           72 SEFATKPCLINGPTGHVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTP--  149 (979)
T ss_dssp             GGTTTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCHHHHHHHHHHHHHTCEEEEECTTSCH--
T ss_pred             HhCCCCeEEEECCCCcEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCHHHHHHHHHHHHcCCEEEeeCCCCCH--
Confidence            359999999997667899999999999999999999999999999999999999999999999999999999999999  


Q ss_pred             HHHHHHhhcCc
Q psy16164        153 KELSQHCVGGL  163 (214)
Q Consensus       153 ~~l~~~l~~s~  163 (214)
                      +++.+++++++
T Consensus       150 ~~l~~~l~~~~  160 (979)
T 3tsy_A          150 AEIAKQAKASN  160 (979)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHcC
Confidence            99999999776

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*

Probab=99.63  E-value=9.5e-16  Score=139.84  Aligned_cols=96  Identities=15%  Similarity=0.190  Sum_probs=85.6

Q ss_pred             HHhhcccc-cCCCceEEEeCC----CCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCE
Q psy16164         66 FQYIQPNV-VHYRLLFQIDAV----TDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGIT  140 (214)
Q Consensus        66 ~~~~~~~~-~~pd~~al~~~~----~~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i  140 (214)
                      .+.+++.+ .+||++|+++..    +++++||+||.+++.++|++|+++|+++||+|+++++|+++++++++||+++|++
T Consensus        79 ~~~l~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~Gav  158 (652)
T 1pg4_A           79 ANCLDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAV  158 (652)
T ss_dssp             HHHTGGGHHHHTTSEEEEEECSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHHHTCE
T ss_pred             HHHHHHHhccCCCceEEEEEcCCCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcCcE
Confidence            34444443 489999999732    2468999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCCCchhHHHHHHHhhcCc
Q psy16164        141 VSSINPQYTEVVKELSQHCVGGL  163 (214)
Q Consensus       141 ~vpl~~~~~~~~~~l~~~l~~s~  163 (214)
                      ++|+++.+++  +++.+++.+++
T Consensus       159 ~vpl~~~~~~--~~l~~~l~~~~  179 (652)
T 1pg4_A          159 HSVIFGGFSP--EAVAGCIIDSS  179 (652)
T ss_dssp             EEECCTTSCH--HHHHHHHHHHT
T ss_pred             EEecCCCCCH--HHHHHHHHhcC
Confidence            9999999999  99999999776

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1

Probab=99.63  E-value=1.1e-15  Score=139.71  Aligned_cols=88  Identities=20%  Similarity=0.234  Sum_probs=82.3

Q ss_pred             cCCCceEEEeCC----CCeeeeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCC
Q psy16164         74 VHYRLLFQIDAV----TDITYTYDDILQKSLQLADALQ-KRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQY  148 (214)
Q Consensus        74 ~~pd~~al~~~~----~~~~~Ty~el~~~~~~la~~L~-~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~  148 (214)
                      .+||++|+++..    +++++||+||.+++.++|+.|+ ++|+++||+|+++++|+++++++++||+++|++++|+++.+
T Consensus        94 ~~pd~~Al~~~~~~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a~lA~~~~Gav~vpl~~~~  173 (663)
T 1ry2_A           94 KTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGF  173 (663)
T ss_dssp             TCTTSEEEEEECSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHHHTTCEEEECCTTS
T ss_pred             cCCCceEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEeeCCCC
Confidence            489999999732    3578999999999999999999 99999999999999999999999999999999999999999


Q ss_pred             chhHHHHHHHhhcCc
Q psy16164        149 TEVVKELSQHCVGGL  163 (214)
Q Consensus       149 ~~~~~~l~~~l~~s~  163 (214)
                      +.  +++.+++++++
T Consensus       174 ~~--~~l~~~l~~~~  186 (663)
T 1ry2_A          174 SS--NSLRDRINDGD  186 (663)
T ss_dssp             CH--HHHHHHHHHHT
T ss_pred             CH--HHHHHHHHhcC
Confidence            99  99999999766

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*

Probab=99.62  E-value=2.1e-15  Score=134.83  Aligned_cols=87  Identities=29%  Similarity=0.405  Sum_probs=82.4

Q ss_pred             cCCCceEEEeCCCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCchhHH
Q psy16164         74 VHYRLLFQIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTEVVK  153 (214)
Q Consensus        74 ~~pd~~al~~~~~~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~~~~~  153 (214)
                      .+ |++|+++..+++++||+||.++++++|..|++.|+++||+|+++++|+++|+++++||+++|++++|+|+.++.  +
T Consensus        38 ~~-~~~A~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~la~~~~Gav~vpl~~~~~~--~  114 (548)
T 2d1s_A           38 KL-GAIAFTNAVTGVDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTL--R  114 (548)
T ss_dssp             HH-TCEEEEETTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHHHHTCEEEEECTTSCH--H
T ss_pred             cc-CCceEEEcCCCCEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhhCCEEeccCCCCCH--H
Confidence            47 99999985457899999999999999999999999999999999999999999999999999999999999999  9


Q ss_pred             HHHHHhhcCc
Q psy16164        154 ELSQHCVGGL  163 (214)
Q Consensus       154 ~l~~~l~~s~  163 (214)
                      ++.+++++++
T Consensus       115 ~l~~~l~~~~  124 (548)
T 2d1s_A          115 ELVHSLGISK  124 (548)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHhcC
Confidence            9999999766

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}

Probab=99.61  E-value=1.9e-15  Score=136.86  Aligned_cols=89  Identities=17%  Similarity=0.153  Sum_probs=83.5

Q ss_pred             cccccCCCceEEEeCCCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCc
Q psy16164         70 QPNVVHYRLLFQIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYT  149 (214)
Q Consensus        70 ~~~~~~pd~~al~~~~~~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~  149 (214)
                      ++.+. ||++|++++  ++++||+||.++++++|.+|++.|+++||+|+++++|+++++++++||+++|+++||+++.++
T Consensus        34 ~~~a~-pd~~Av~~~--~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~lA~l~aG~~~vpl~~~~~  110 (617)
T 3rg2_A           34 TRHAA-SDSIAVIDG--ERQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLGVAPVLALFSHQ  110 (617)
T ss_dssp             HTTTT-CCSEEEEET--TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEEECTTCC
T ss_pred             HHhhC-CCCeEEecC--CceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHhcCeEEccCCcccc
Confidence            44444 999999996  789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHhhcCc
Q psy16164        150 EVVKELSQHCVGGL  163 (214)
Q Consensus       150 ~~~~~l~~~l~~s~  163 (214)
                      .  +++.+++++++
T Consensus       111 ~--~~l~~~l~~~~  122 (617)
T 3rg2_A          111 R--SELNAYASQIE  122 (617)
T ss_dssp             H--HHHHHHHHHHC
T ss_pred             H--HHHHHHHhhcC
Confidence            9  99999998766

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}

Probab=99.61  E-value=3.3e-15  Score=133.65  Aligned_cols=102  Identities=16%  Similarity=0.063  Sum_probs=87.2

Q ss_pred             ccccchhhHHHHHHHhhcccccCCCceEEEeCCC--------CeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCC
Q psy16164         53 ATCCMISGLILFIFQYIQPNVVHYRLLFQIDAVT--------DITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENR  124 (214)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~pd~~al~~~~~--------~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~  124 (214)
                      .+..++.+++....      ..+||++|+++...        ++++||+||.++++++|+.|.+.|+ +||+|+++++|+
T Consensus        17 ~~~~tl~~~l~~~a------~~~p~~~A~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~   89 (562)
T 3ite_A           17 TSTVPPSHYIETWA------KTHPEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRS   89 (562)
T ss_dssp             -CCCCTTHHHHHHH------HHCTTSEEEEEEECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSC
T ss_pred             cccCCHHHHHHHHH------HHCCCchhhhcccccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCC
Confidence            34455555543332      25999999987521        2689999999999999999999999 799999999999


Q ss_pred             CcHHHHHHHHHHcCCEEEecCCCCchhHHHHHHHhhcCc
Q psy16164        125 LDYPVLIVAASLLGITVSSINPQYTEVVKELSQHCVGGL  163 (214)
Q Consensus       125 ~~~~~~~lA~~~~G~i~vpl~~~~~~~~~~l~~~l~~s~  163 (214)
                      ++|+++++||+++|+++||+|+.++.  +++.+++++++
T Consensus        90 ~~~~~~~lA~~~~Gav~vpl~~~~~~--~~l~~~l~~~~  126 (562)
T 3ite_A           90 LIAFAIIVGIMKSGNTYVPIEAGLPN--DRKSFLLRDSR  126 (562)
T ss_dssp             HHHHHHHHHHHHTTCEEEECCTTSCH--HHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhCCEEEecCCcCHH--HHHHHHHHhcC
Confidence            99999999999999999999999999  99999999766

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A

Probab=99.60  E-value=3.9e-15  Score=130.34  Aligned_cols=87  Identities=20%  Similarity=0.217  Sum_probs=79.9

Q ss_pred             cCCCceEEEeCC-----CC--eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCC
Q psy16164         74 VHYRLLFQIDAV-----TD--ITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINP  146 (214)
Q Consensus        74 ~~pd~~al~~~~-----~~--~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~  146 (214)
                      .+||++|+++.+     ++  +++||+||.++++++|.+|++.|+ +||+|+++++|+++|+++++||+++|+++||+|+
T Consensus        36 ~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~  114 (480)
T 3t5a_A           36 LQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEYVVAFLGALQAGRIAVPLSV  114 (480)
T ss_dssp             HSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             hCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHHHHHHHHHHHhCcEEEeeCC
Confidence            599999998753     22  689999999999999999999996 9999999999999999999999999999999999


Q ss_pred             ---CCchhHHHHHHHhhcCc
Q psy16164        147 ---QYTEVVKELSQHCVGGL  163 (214)
Q Consensus       147 ---~~~~~~~~l~~~l~~s~  163 (214)
                         .++.  +++.+++++++
T Consensus       115 ~~~~~~~--~~l~~il~~~~  132 (480)
T 3t5a_A          115 PQGGVTD--ERSDSVLSDSS  132 (480)
T ss_dssp             CCSCTTC--CHHHHHHHHHC
T ss_pred             CCccchH--HHHHHHHHhCC
Confidence               7788  99999999766

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*

Probab=99.60  E-value=2.5e-15  Score=133.00  Aligned_cols=88  Identities=20%  Similarity=0.202  Sum_probs=80.4

Q ss_pred             cCCCceEEEe-CCCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCchhH
Q psy16164         74 VHYRLLFQID-AVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTEVV  152 (214)
Q Consensus        74 ~~pd~~al~~-~~~~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~~~~  152 (214)
                      .+|+++++.. ..+++++||+||.++++++|.+|++.|+++||+|+++++|+++|+++++||+++|++++|+|+.++.  
T Consensus        12 ~~p~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl~~~~~~--   89 (503)
T 4fuq_A           12 KLDDPHKLAIETAAGDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPLNTAYTL--   89 (503)
T ss_dssp             CCSCTTSEEEEETTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCEEEECCTTCCH--
T ss_pred             hCCCCceEEEecCCCcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEEecCCCCCH--
Confidence            4777777653 1247899999999999999999999999999999999999999999999999999999999999999  


Q ss_pred             HHHHHHhhcCc
Q psy16164        153 KELSQHCVGGL  163 (214)
Q Consensus       153 ~~l~~~l~~s~  163 (214)
                      +++.+++++++
T Consensus        90 ~~l~~il~~~~  100 (503)
T 4fuq_A           90 HELDYFITDAE  100 (503)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHhcC
Confidence            99999999766

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*

Probab=99.59  E-value=6.5e-15  Score=132.33  Aligned_cols=87  Identities=14%  Similarity=0.143  Sum_probs=81.4

Q ss_pred             CCCceEEEeCC---CCeeeeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCch
Q psy16164         75 HYRLLFQIDAV---TDITYTYDDILQKSLQLADALQKR-GYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTE  150 (214)
Q Consensus        75 ~pd~~al~~~~---~~~~~Ty~el~~~~~~la~~L~~~-Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~~  150 (214)
                      +||++|+++.+   .++++||+||.++++++|.+|++. |+++||+|+++++|+++|+++++||+++|+++||+|+.++.
T Consensus        56 ~p~~~al~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Ga~~vpl~~~~~~  135 (570)
T 3c5e_A           56 RPPSPALWWVNGKGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKS  135 (570)
T ss_dssp             SCCCEEEEEECSSSCEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCHHHHHHHHHHHHHTCEEEECCTTCCH
T ss_pred             CCCceEEEEEcCCCceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCCCCCH
Confidence            89999998742   236899999999999999999998 99999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHhhcCc
Q psy16164        151 VVKELSQHCVGGL  163 (214)
Q Consensus       151 ~~~~l~~~l~~s~  163 (214)
                        +++.+++++++
T Consensus       136 --~~l~~~l~~~~  146 (570)
T 3c5e_A          136 --TDILYRLQMSK  146 (570)
T ss_dssp             --HHHHHHHHHHT
T ss_pred             --HHHHHHHHhcC
Confidence              99999999766

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*

Probab=99.57  E-value=1.3e-14  Score=130.37  Aligned_cols=97  Identities=16%  Similarity=0.090  Sum_probs=82.9

Q ss_pred             cCCCceEEEeCC--CCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCch-
Q psy16164         74 VHYRLLFQIDAV--TDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTE-  150 (214)
Q Consensus        74 ~~pd~~al~~~~--~~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~~-  150 (214)
                      .+||++|+++.+  .++++||+||.+++.++|.+|++.|+++||+|+++++|+++|+++++||+++|++++|++|.++. 
T Consensus        23 ~~p~~~a~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~  102 (590)
T 3kxw_A           23 HSPNKKSCTFLNKELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYAGCIAVPIYPPAQEK  102 (590)
T ss_dssp             HCTTSEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEECCCCSHH
T ss_pred             hCCCCeEEEEEcCCeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHHhCcEEEEecCCCchH
Confidence            599999998642  25799999999999999999999999999999999999999999999999999999999998843 


Q ss_pred             hHHHHHHHhhcCc--eeecchH
Q psy16164        151 VVKELSQHCVGGL--ELQQKRV  170 (214)
Q Consensus       151 ~~~~l~~~l~~s~--~~~~~~~  170 (214)
                      ..+++.+++.+++  ++.....
T Consensus       103 ~~~~~~~~l~~~~~~~vi~~~~  124 (590)
T 3kxw_A          103 LLDKAQRIVTNSKPVIVLMIAD  124 (590)
T ss_dssp             HHHHHHHHHHHHCCSEEEECHH
T ss_pred             HHHHHHHHHHhCCCCEEEeCHH
Confidence            1277888888655  4444333

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*

Probab=99.56  E-value=6.8e-15  Score=130.25  Aligned_cols=86  Identities=12%  Similarity=0.071  Sum_probs=81.7

Q ss_pred             cCCCceEEEeCCCCeeeeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCchhH
Q psy16164         74 VHYRLLFQIDAVTDITYTYDDILQKSLQLADALQKR-GYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTEVV  152 (214)
Q Consensus        74 ~~pd~~al~~~~~~~~~Ty~el~~~~~~la~~L~~~-Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~~~~  152 (214)
                      .+||++|+++.  ++++||+||.++++++|.+|.+. |.++|++|+++++|+++|+++++||+++|++++|+|+.++.  
T Consensus        13 ~~p~~~Al~~~--~~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~--   88 (511)
T 3e7w_A           13 TYPQTDAFRSQ--GQSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLGSVKAGHPYIPVDLSIPS--   88 (511)
T ss_dssp             HSTTSEEEEET--TEEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHHHHHHTCCEEEEETTSCH--
T ss_pred             HCCCCeEEEcC--CceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHHHHHhCCEEEecCCCChH--
Confidence            59999999986  78999999999999999999874 88899999999999999999999999999999999999999  


Q ss_pred             HHHHHHhhcCc
Q psy16164        153 KELSQHCVGGL  163 (214)
Q Consensus       153 ~~l~~~l~~s~  163 (214)
                      +++.+++++++
T Consensus        89 ~~l~~~l~~~~   99 (511)
T 3e7w_A           89 ERIAKIIESSG   99 (511)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHhCC
Confidence            99999999766

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}

Probab=99.56  E-value=6.8e-15  Score=143.37  Aligned_cols=87  Identities=17%  Similarity=0.260  Sum_probs=83.5

Q ss_pred             ccCCCceEEEeCCCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCchhH
Q psy16164         73 VVHYRLLFQIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTEVV  152 (214)
Q Consensus        73 ~~~pd~~al~~~~~~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~~~~  152 (214)
                      ..+||++|+++.  ++++||+||.++++++|..|++.|+++|++|+|+++|+++++++++||+++|+++||++|.++.  
T Consensus       475 ~~~p~~~Av~~~--~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~lailkaG~~~vpldp~~p~--  550 (1304)
T 2vsq_A          475 NANPDAPALTYS--GQTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGVLKAGAAYLPVDPKLPE--  550 (1304)
T ss_dssp             HHCTTSEEEESS--SCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHTTCEEEECCTTSCH--
T ss_pred             HhCCCCeEEEEC--CeeEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHHHHHHHHHHHHHCCEEEEECCCCHH--
Confidence            359999999986  7899999999999999999999999999999999999999999999999999999999999999  


Q ss_pred             HHHHHHhhcCc
Q psy16164        153 KELSQHCVGGL  163 (214)
Q Consensus       153 ~~l~~~l~~s~  163 (214)
                      +++.+++++++
T Consensus       551 ~rl~~il~~~~  561 (1304)
T 2vsq_A          551 DRISYMLADSA  561 (1304)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHcC
Confidence            99999999776

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=99.56  E-value=1.3e-14  Score=128.04  Aligned_cols=83  Identities=22%  Similarity=0.263  Sum_probs=79.3

Q ss_pred             cCCCceEEEeCCCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCchhHH
Q psy16164         74 VHYRLLFQIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTEVVK  153 (214)
Q Consensus        74 ~~pd~~al~~~~~~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~~~~~  153 (214)
                      .+||++|+++.  ++++||+||.+++.++|.+|++.   +||+|+++++|+++|+++++||+++|++++|+|+.++.  +
T Consensus        13 ~~pd~~Al~~~--~~~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~--~   85 (501)
T 3ipl_A           13 QNGHHIAITDG--QESYTYQNLYCEASLLAKRLKAY---QQSRVGLYIDNSIQSIILIHACWLANIEIAMINTRLTP--N   85 (501)
T ss_dssp             HHTTSEEEECS--SCEEEHHHHHHHHHHHHHHHHTT---CCSEEEEECCSSHHHHHHHHHHHHTTCEEEECCTTSCH--H
T ss_pred             hcCCceEEEeC--CcEEEHHHHHHHHHHHHHHHHHc---CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEecCccCCH--H
Confidence            58999999986  78999999999999999999986   89999999999999999999999999999999999999  9


Q ss_pred             HHHHHhhcCc
Q psy16164        154 ELSQHCVGGL  163 (214)
Q Consensus       154 ~l~~~l~~s~  163 (214)
                      ++.+++++++
T Consensus        86 ~l~~~l~~~~   95 (501)
T 3ipl_A           86 EMTNQMRSID   95 (501)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHhcC
Confidence            9999999776

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*

Probab=99.41  E-value=1e-13  Score=122.69  Aligned_cols=86  Identities=19%  Similarity=0.206  Sum_probs=75.0

Q ss_pred             hcccc-cCCC-ceEEEeCCCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCC
Q psy16164         69 IQPNV-VHYR-LLFQIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINP  146 (214)
Q Consensus        69 ~~~~~-~~pd-~~al~~~~~~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~  146 (214)
                      +...+ .+|+ ++|++++  ++++||+||.+++.++|.+|.     .|++|+++++|+++|+++++||+++|+++||+||
T Consensus        28 l~~~a~~~p~d~~Al~~~--~~~~Ty~eL~~~~~~~A~~L~-----~~~~V~i~~~~~~~~~~~~la~~~~Ga~~vpl~~  100 (505)
T 3nyq_A           28 LSPAPTGAPADRPALRFG--ERSLTYAELAAAAGATAGRIG-----GAGRVAVWATPAMETGVAVVAALLAGVAAVPLNP  100 (505)
T ss_dssp             TSSCCCSGGGGSEEEEET--TEEEEHHHHHHHHHHHHTTCC--------CEEEECCSSHHHHHHHHHHHHHTCCEEEECT
T ss_pred             HHHHHHhCCCCCeEEEEC--CeeeeHHHHHHHHHHHHhhcc-----CCCEEEEEcCCCHHHHHHHHHHHHhCCEEEEcCC
Confidence            34444 4676 9999996  789999999999999998774     3889999999999999999999999999999999


Q ss_pred             CCchhHHHHHHHhhcCc
Q psy16164        147 QYTEVVKELSQHCVGGL  163 (214)
Q Consensus       147 ~~~~~~~~l~~~l~~s~  163 (214)
                      .++.  +++.+++++++
T Consensus       101 ~~~~--~~l~~il~~~~  115 (505)
T 3nyq_A          101 KSGD--KELAHILSDSA  115 (505)
T ss_dssp             TCCH--HHHHHHHHHHC
T ss_pred             CCCH--HHHHHHHHHCC
Confidence            9999  99999999766

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}

Probab=84.47  E-value=7.5  Score=32.71  Aligned_cols=80  Identities=20%  Similarity=0.071  Sum_probs=58.0

Q ss_pred             EEeCCCCe----eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCC--cHHHHHHHHHHcCCEEEecCCCCchhHHH
Q psy16164         81 QIDAVTDI----TYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRL--DYPVLIVAASLLGITVSSINPQYTEVVKE  154 (214)
Q Consensus        81 l~~~~~~~----~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~--~~~~~~lA~~~~G~i~vpl~~~~~~~~~~  154 (214)
                      +..+.+|.    .+|.+.+...+..++..+...|+.++|++....+-+.  ..+...++++..|+..++.... .+  ++
T Consensus        99 ~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~-~~--~~  175 (443)
T 2y4o_A           99 ASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPMSGG-QT--EK  175 (443)
T ss_dssp             EECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECCCSC-CH--HH
T ss_pred             ECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEECCCC-CH--HH
Confidence            34555554    5799999888887888777889999999998888643  2344567888899999987765 44  66


Q ss_pred             HHHHhhcCc
Q psy16164        155 LSQHCVGGL  163 (214)
Q Consensus       155 l~~~l~~s~  163 (214)
                      +...+.+.+
T Consensus       176 ~~~~i~~~~  184 (443)
T 2y4o_A          176 QVQLIRDFE  184 (443)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHhC
Confidence            666665433

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*

Probab=83.27  E-value=7.7  Score=32.59  Aligned_cols=85  Identities=21%  Similarity=0.108  Sum_probs=59.5

Q ss_pred             CCceEE---EeCCCCe----eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCC--cHHHHHHHHHHcCCEEEecCC
Q psy16164         76 YRLLFQ---IDAVTDI----TYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRL--DYPVLIVAASLLGITVSSINP  146 (214)
Q Consensus        76 pd~~al---~~~~~~~----~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~--~~~~~~lA~~~~G~i~vpl~~  146 (214)
                      ++.++.   ..+.+|.    .+|.+.+...+..++..+...|+.++|++....+-..  ..+...++++..|+..++...
T Consensus        89 ~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~  168 (437)
T 2y27_A           89 QDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPFGG  168 (437)
T ss_dssp             GGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECCCS
T ss_pred             hhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeCCC
Confidence            445553   3444453    5799999888877777777789999999998887543  224456788899999998766


Q ss_pred             CCchhHHHHHHHhhcCc
Q psy16164        147 QYTEVVKELSQHCVGGL  163 (214)
Q Consensus       147 ~~~~~~~~l~~~l~~s~  163 (214)
                      . .+  +.+...+.+.+
T Consensus       169 ~-~~--~~~~~~i~~~~  182 (437)
T 2y27_A          169 G-QT--EKQVQLIQDFR  182 (437)
T ss_dssp             C-CH--HHHHHHHHHHC
T ss_pred             C-CH--HHHHHHHHHhC
Confidence            4 45  66666665433

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*

Probab=82.10  E-value=9  Score=32.15  Aligned_cols=82  Identities=17%  Similarity=0.070  Sum_probs=59.3

Q ss_pred             CceEEE---eCCCCe----eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCC--cHHHHHHHHHHcCCEEEecCCC
Q psy16164         77 RLLFQI---DAVTDI----TYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRL--DYPVLIVAASLLGITVSSINPQ  147 (214)
Q Consensus        77 d~~al~---~~~~~~----~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~--~~~~~~lA~~~~G~i~vpl~~~  147 (214)
                      +.++++   .+.+|.    .+|.+.+...+..++..+...|+.++|++....+-+.  ..+...++++..|+..++..+.
T Consensus        86 ~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~  165 (436)
T 3qov_A           86 RDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAAG  165 (436)
T ss_dssp             HHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCSC
T ss_pred             CCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCCC
Confidence            556644   344443    5899999888888888888889999999999887543  3344667888999999987655


Q ss_pred             CchhHHHHHHHhhc
Q psy16164        148 YTEVVKELSQHCVG  161 (214)
Q Consensus       148 ~~~~~~~l~~~l~~  161 (214)
                       .+  +.+...+..
T Consensus       166 -~~--~~~~~~i~~  176 (436)
T 3qov_A          166 -NS--KRQIKFISD  176 (436)
T ss_dssp             -CH--HHHHHHHHH
T ss_pred             -CH--HHHHHHHHH
Confidence             34  555555553

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	214
d1lcia_	541	e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali	4e-16
d3cw9a1	503	e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc	3e-14
d1amua_	514	e.23.1.1 (A:) Phenylalanine activating domain of g	1e-13
d1mdba_	536	e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B	1e-13
d1v25a_	534	e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0	2e-13
d1pg4a_	643	e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en	1e-12
d1ry2a_	640	e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast	2e-10

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

 Score = 74.2 bits (181), Expect = 4e-16
 Identities = 20/73 (27%), Positives = 40/73 (54%)

Query: 78  LLFQIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLL 137
            +   DA  ++  TY +  + S++LA+A+++ G      + +CSEN L + + ++ A  +
Sbjct: 36  TIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFI 95

Query: 138 GITVSSINPQYTE 150
           G+ V+  N  Y E
Sbjct: 96  GVAVAPANDIYNE 108

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

 Score = 68.9 bits (167), Expect = 3e-14
 Identities = 14/69 (20%), Positives = 28/69 (40%)

Query: 82  IDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITV 141
                 +  T+ ++  +   +A  L   G R    V++ + N  D  + I+A   LG   
Sbjct: 22  AVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVP 81

Query: 142 SSINPQYTE 150
           + +NP+   
Sbjct: 82  ALLNPRLKS 90

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

 Score = 66.8 bits (162), Expect = 1e-13
 Identities = 16/64 (25%), Positives = 30/64 (46%)

Query: 87  DITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINP 146
           +   TY ++  K+ QLA    ++G  +  +V I  E  +D  + I+A    G     I+ 
Sbjct: 46  NEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYVPIDI 105

Query: 147 QYTE 150
           +Y +
Sbjct: 106 EYPK 109

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

 Score = 66.6 bits (161), Expect = 1e-13
 Identities = 14/64 (21%), Positives = 29/64 (45%)

Query: 87  DITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINP 146
           +  ++Y ++  ++ +LA   QK G ++ D V +   N  ++  +I A   LG       P
Sbjct: 48  NTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFALP 107

Query: 147 QYTE 150
            +  
Sbjct: 108 SHRS 111

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

 Score = 65.7 bits (159), Expect = 2e-13
 Identities = 14/72 (19%), Positives = 30/72 (41%)

Query: 79  LFQIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLG 138
           + ++        TY ++ Q++ +L   L+  G   GD V+    N   +     A   +G
Sbjct: 30  VSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMG 89

Query: 139 ITVSSINPQYTE 150
             + + NP+ + 
Sbjct: 90  AVLHTANPRLSP 101

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

 Score = 63.9 bits (155), Expect = 1e-12
 Identities = 14/68 (20%), Positives = 31/68 (45%)

Query: 83  DAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVS 142
           D       +Y ++ +   + A+ L   G ++GD+V+I      +  V ++A + +G   S
Sbjct: 97  DTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHS 156

Query: 143 SINPQYTE 150
            I   ++ 
Sbjct: 157 VIFGGFSP 164

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.2 bits (137), Expect = 2e-10
 Identities = 15/69 (21%), Positives = 33/69 (47%), Gaps = 1/69 (1%)

Query: 83  DAVTDITYTYDDILQKSLQLADALQ-KRGYRRGDIVSICSENRLDYPVLIVAASLLGITV 141
           +     + TY ++L++  Q+A  L    G R+GD V++      +  + ++A S +G   
Sbjct: 84  EPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIH 143

Query: 142 SSINPQYTE 150
           S +   ++ 
Sbjct: 144 SVVFAGFSS 152

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	214
d3cw9a1	503	4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId	99.73
d1amua_	514	Phenylalanine activating domain of gramicidin synt	99.72
d1lcia_	541	Luciferase {Firefly (Photinus pyralis) [TaxId: 705	99.71
d1mdba_	536	Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil	99.69
d1v25a_	534	Long chain fatty acid-CoA ligase TT0168 {Thermus t	99.68
d1ry2a_	640	Acetyl-CoA synthetase {Baker's yeast (Saccharomyce	99.65
d1pg4a_	643	Acetyl-CoA synthetase {Salmonella enterica [TaxId:	99.61

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

Probab=99.73  E-value=2e-17  Score=141.77  Aligned_cols=88  Identities=19%  Similarity=0.203  Sum_probs=84.9

Q ss_pred             cCCCceEEEeCCCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCCchhHH
Q psy16164         74 VHYRLLFQIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQYTEVVK  153 (214)
Q Consensus        74 ~~pd~~al~~~~~~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~~~~~~  153 (214)
                      .+||++|+++.+.++++||+||.+++.++|++|+++|+++||+|+++++|+++|+++++||+++|++++|++|.+++  +
T Consensus        14 ~~pd~~al~~~~~~~~~Ty~el~~~~~~~a~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~vpi~~~~~~--~   91 (503)
T d3cw9a1          14 RAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKS--A   91 (503)
T ss_dssp             HSTTSEEEEEGGGTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHHTCEEEEECTTSCH--H
T ss_pred             hCCCCeEEEECCCCcEEeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHHHHHHHHHHHhCcEEEEeCCCCCH--H
Confidence            59999999998778899999999999999999999999999999999999999999999999999999999999999  9


Q ss_pred             HHHHHhhcCc
Q psy16164        154 ELSQHCVGGL  163 (214)
Q Consensus       154 ~l~~~l~~s~  163 (214)
                      ++.+++++++
T Consensus        92 ~i~~~l~~~~  101 (503)
T d3cw9a1          92 ELAELIKRGE  101 (503)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHhcC
Confidence            9999999777

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

Probab=99.72  E-value=3.2e-17  Score=142.03  Aligned_cols=108  Identities=18%  Similarity=0.158  Sum_probs=92.9

Q ss_pred             cccccchhhHHHHHHHhhcccccCCCceEEEeCCCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHH
Q psy16164         52 FATCCMISGLILFIFQYIQPNVVHYRLLFQIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLI  131 (214)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~pd~~al~~~~~~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~  131 (214)
                      +..+.++.+++...      +.++||++|+++.  ++++||+||.++++++|+.|+++|+++||+|+++++|+++|++++
T Consensus        19 ~~~~~tl~~l~~~~------a~~~Pd~~Al~~~--~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~   90 (514)
T d1amua_          19 YPRDKTIHQLFEEQ------VSKRPNNVAIVCE--NEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGI   90 (514)
T ss_dssp             CCTTCCHHHHHHHH------HHHCTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred             CCCCCcHHHHHHHH------HHhCCCCeEEEEC--CeeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHHHHHH
Confidence            33455666654333      2269999999996  789999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCEEEecCCCCchhHHHHHHHhhcCc--eeecch
Q psy16164        132 VAASLLGITVSSINPQYTEVVKELSQHCVGGL--ELQQKR  169 (214)
Q Consensus       132 lA~~~~G~i~vpl~~~~~~~~~~l~~~l~~s~--~~~~~~  169 (214)
                      +||+++|++++|+|+.+++  +++.+++..++  ++.+..
T Consensus        91 la~~~~G~v~v~l~~~~~~--~~l~~~l~~~~~~~li~~~  128 (514)
T d1amua_          91 LAVLKAGGAYVPIDIEYPK--ERIQYILDDSQARMLLTQK  128 (514)
T ss_dssp             HHHHHTTCEEEECCTTSCH--HHHHHHHHHHTCSEEEECG
T ss_pred             HHHHHhCcEEEEeCCCCCH--HHHHHHHhccCCcEEEEeh
Confidence            9999999999999999999  99999999655  444443

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

Probab=99.71  E-value=5.7e-17  Score=141.02  Aligned_cols=110  Identities=20%  Similarity=0.306  Sum_probs=95.6

Q ss_pred             ccchhhHHHHHHHhhcccccCCCceEEEeCCCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHH
Q psy16164         55 CCMISGLILFIFQYIQPNVVHYRLLFQIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAA  134 (214)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~pd~~al~~~~~~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~  134 (214)
                      +.++++++.+..   ++.+..|+.+|+.+...+.++||+||.+++.++|..|+++|+++||+|+++++|+++|+++++||
T Consensus        16 ~~t~~~~l~~~~---~~~~~~P~~~a~~d~~~~~~lTy~el~~~~~~lA~~L~~~Gi~~Gd~Vai~~~ns~e~~v~~lA~   92 (541)
T d1lcia_          16 DGTAGEQLHKAM---KRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGA   92 (541)
T ss_dssp             SSCHHHHHHHHH---HHHHTSTTCEEEEETTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCSSTHHHHHHH
T ss_pred             CCCHHHHHHHHH---HhhCCCCCeEEEEeCCCCeEeeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHHHHHHHHH
Confidence            456777755543   45556799999999877789999999999999999999999999999999999999999999999


Q ss_pred             HHcCCEEEecCCCCchhHHHHHHHhhcCc--eeecch
Q psy16164        135 SLLGITVSSINPQYTEVVKELSQHCVGGL--ELQQKR  169 (214)
Q Consensus       135 ~~~G~i~vpl~~~~~~~~~~l~~~l~~s~--~~~~~~  169 (214)
                      +++|++++|+++.++.  +++.+++++++  .+....
T Consensus        93 ~~~G~i~vpl~~~~~~--~~l~~~l~~~~~~~vi~~~  127 (541)
T d1lcia_          93 LFIGVAVAPANDIYNE--RELLNSMNISQPTVVFVSK  127 (541)
T ss_dssp             HHHTCEEEECCTTCCH--HHHHHHHHHHCCSEEEECG
T ss_pred             HHhCeEEEecCCCCCH--HHHHHHHHhccceEEeeec
Confidence            9999999999999999  99999998655  444443

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

Probab=99.69  E-value=6.4e-17  Score=140.40  Aligned_cols=97  Identities=18%  Similarity=0.131  Sum_probs=88.5

Q ss_pred             chhhHHHHHHHhhcccccCCCceEEEeCCCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHH
Q psy16164         57 MISGLILFIFQYIQPNVVHYRLLFQIDAVTDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASL  136 (214)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~pd~~al~~~~~~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~  136 (214)
                      ++++++....+      .+||++|++++  ++++||+||.++++++|++|.+.|+++||+|+++++|+++|+++++||++
T Consensus        26 tl~~~l~~~a~------~~pd~~Al~~~--~~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~V~i~~~n~~~~~v~~lA~~~   97 (536)
T d1mdba_          26 TFGDLLRDRAA------KYGDRIAITCG--NTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFR   97 (536)
T ss_dssp             CHHHHHHHHHH------HHTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHH------HCCCCeEEEEC--CEeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHHHHHHHHHHH
Confidence            56666444332      59999999996  78999999999999999999999999999999999999999999999999


Q ss_pred             cCCEEEecCCCCchhHHHHHHHhhcCc
Q psy16164        137 LGITVSSINPQYTEVVKELSQHCVGGL  163 (214)
Q Consensus       137 ~G~i~vpl~~~~~~~~~~l~~~l~~s~  163 (214)
                      +|++++|++|.++.  +++.+++++++
T Consensus        98 ~G~i~vpl~~~~~~--~~~~~~l~~~~  122 (536)
T d1mdba_          98 LGALPVFALPSHRS--SEITYFCEFAE  122 (536)
T ss_dssp             HTCEEEECCTTCCH--HHHHHHHHHTT
T ss_pred             hCcEEEecCCCCCH--HHHHHHHHhhc
Confidence            99999999999999  99999999776

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

Probab=99.68  E-value=2.3e-16  Score=137.49  Aligned_cols=105  Identities=17%  Similarity=0.128  Sum_probs=91.1

Q ss_pred             ccccccchhhHHHHHHHhhcccccCCCceEEEeCCCC--eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHH
Q psy16164         51 VFATCCMISGLILFIFQYIQPNVVHYRLLFQIDAVTD--ITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYP  128 (214)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~pd~~al~~~~~~--~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~  128 (214)
                      ..+.+.++.+++....+      .+||++|+++..+|  +++||+||.+++.++|+.|.+.|+++||+|+++++|+++|+
T Consensus         6 ~~~~~~~l~~~l~~~a~------~~pd~~av~~~~~g~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~n~~e~~   79 (534)
T d1v25a_           6 MMDEELNLWDFLERAAA------LFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHL   79 (534)
T ss_dssp             BCCCCCCTHHHHHHHHH------HSTTCEEEEECTTSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHH
T ss_pred             cCCCCCCHHHHHHHHHH------HcCCCeEEEEecCCceEEEcHHHHHHHHHHHHHHHHHCCcCCCCEEEEEeCCCHHHH
Confidence            34445566665444322      59999999987654  36999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCEEEecCCCCchhHHHHHHHhhcCc
Q psy16164        129 VLIVAASLLGITVSSINPQYTEVVKELSQHCVGGL  163 (214)
Q Consensus       129 ~~~lA~~~~G~i~vpl~~~~~~~~~~l~~~l~~s~  163 (214)
                      ++++||+++|++++|++|.+++  +++.+.+++++
T Consensus        80 ~~~lA~~~~G~v~vpl~~~~~~--~~l~~~l~~~~  112 (534)
T d1v25a_          80 EAYFAVPGMGAVLHTANPRLSP--KEIAYILNHAE  112 (534)
T ss_dssp             HHHHHHHHTTCEEEECCTTSCH--HHHHHHHHHHT
T ss_pred             HHHHHHHHhCcEEEecCCCCCH--HHHHHHHHhhc
Confidence            9999999999999999999999  99999999766

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.65  E-value=1.3e-16  Score=142.52  Aligned_cols=88  Identities=20%  Similarity=0.234  Sum_probs=81.1

Q ss_pred             cCCCceEEEeCC----CCeeeeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEEecCCCC
Q psy16164         74 VHYRLLFQIDAV----TDITYTYDDILQKSLQLADALQ-KRGYRRGDIVSICSENRLDYPVLIVAASLLGITVSSINPQY  148 (214)
Q Consensus        74 ~~pd~~al~~~~----~~~~~Ty~el~~~~~~la~~L~-~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~vpl~~~~  148 (214)
                      .+||++|+++..    +++++||+||.+++.++|++|+ ++|+++||+|+++++|+++++++++||+++|++++|+++.+
T Consensus        71 ~~pd~~Ali~~~~~~g~~~~~Ty~eL~~~v~~~A~~L~~~~Gv~~Gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpi~~~~  150 (640)
T d1ry2a_          71 KTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGF  150 (640)
T ss_dssp             TCTTSEEEEEECSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHHHTTCEEEECCTTS
T ss_pred             hCCCCEEEEEEecCCCCeeEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHhccCceEeecCCCCC
Confidence            489999998532    2468999999999999999997 67999999999999999999999999999999999999999


Q ss_pred             chhHHHHHHHhhcCc
Q psy16164        149 TEVVKELSQHCVGGL  163 (214)
Q Consensus       149 ~~~~~~l~~~l~~s~  163 (214)
                      ++  +++.+++.+++
T Consensus       151 ~~--~~l~~~~~~~~  163 (640)
T d1ry2a_         151 SS--NSLRDRINDGD  163 (640)
T ss_dssp             CH--HHHHHHHHHHT
T ss_pred             CH--HHHHHHHHhhh
Confidence            99  99999999766

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

Probab=99.61  E-value=8.3e-16  Score=137.90  Aligned_cols=94  Identities=15%  Similarity=0.200  Sum_probs=83.6

Q ss_pred             hhcccc-cCCCceEEEeCC----CCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCEEE
Q psy16164         68 YIQPNV-VHYRLLFQIDAV----TDITYTYDDILQKSLQLADALQKRGYRRGDIVSICSENRLDYPVLIVAASLLGITVS  142 (214)
Q Consensus        68 ~~~~~~-~~pd~~al~~~~----~~~~~Ty~el~~~~~~la~~L~~~Gl~~gd~V~i~~~n~~~~~~~~lA~~~~G~i~v  142 (214)
                      .+++.+ .+||++|+++..    +.+++||+||.+++.++|.+|+++|+++||+|+++++|+++++++++||+++|++++
T Consensus        77 ~ldrh~~~~~d~~Ali~~~~~~~~~~~~TY~eL~~~v~~~A~~L~~~Gv~~Gd~V~i~~~n~~e~iv~~lA~~~~Gav~v  156 (643)
T d1pg4a_          77 CLDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHS  156 (643)
T ss_dssp             HTGGGHHHHTTSEEEEEECSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEE
T ss_pred             HHHHHHHhCCCCEEEEEEecCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecccchHHHHHHHHHHHhCeEEE
Confidence            344433 389999998542    235799999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCchhHHHHHHHhhcCc
Q psy16164        143 SINPQYTEVVKELSQHCVGGL  163 (214)
Q Consensus       143 pl~~~~~~~~~~l~~~l~~s~  163 (214)
                      |+++.+++  +++.+++.+++
T Consensus       157 ~l~~~~~~--~~l~~~l~~~~  175 (643)
T d1pg4a_         157 VIFGGFSP--EAVAGCIIDSS  175 (643)
T ss_dssp             ECCTTSCH--HHHHHHHHHHT
T ss_pred             ecCCCCCH--HHHHHHHHhcC
Confidence            99999999  99999999665