Psyllid ID: psy16181

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480
MGSEKPPVIYRKGLVKFVNSGDSITLITDPKLRTEVTFLFTNVQAPKIARRPRADGPPSAQPEDEPYAWEAREFLRKLIIGKIVWYTAEKPEGNRYYGTLFYPNQDDDITKRSCGIRRKSRKAIATMAHCSIQTKVRKGKLSIFSCSAKSCIYFACMFLFLRTEFPPTDDDITKLLISEGWVSLRSKNPDLLDLENKAKEAGKGKYSTRDEPSAHVRSINWDPEPKQVLDKFGKRIVKAVIDNINPGLTMRAFLLPDHYYVAFCLSGIKIVRENEEYGREVRQYLEERILQRDVNVIIESVQNEKNRIMNATLIHEGQKMNIGELLVREGFASCNTLLQGVYDEKKLREAEKLAQSERKRRWTNYTPKKPPKERAAVVLEIINGDGLVIKYVGDTKEEKVFLSSIKPPRPDGAAAGGGGEGKAPVVRSKPLYDVPWLYEAREFLRTRLIGKKVMVSEDYAQDARDKFPEKKCVSVFVGQE
ccccccccEEEEEEEEEEEEccEEEEEEccccccEEEEEEEEccccccccccccccccccccccccHHHHHHHHHHHHHcccEEEEEEEEcccccEEEEEEccccccccccccccccccHHHHHHHHHHcccEEEEEcccEEEEEccccccccHHHEEcccccccccccHHHHHHHHHHcccccccccHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHcccEEEEEEEEEccccEEEEEEccccEEEEEEEcccccccccccHHHHHHHHHHHHHcccEEEEEEEEEEccccEEEEEEEEEccccccHHHHHHHcccEEEEEEccccccHHHHHHHHHHHHHcccccccccccccccccccEEEEEEEcccEEEEEEcccccEEEEEEccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccEEEEEEEEEEccccccccEEEEEEEEccc
ccccccccccccEEEEEEEcccEEEEEccccccccEEEEEEEEcccccccccccccccccccccccHHHHHHHHHHHHHcccEEEEEEEccccccccEEEEccccccccccccccccccccccccccccHHHHHHHccccEEEEEEEEEccccccccEEEEccccccccccHHHHHHHccccEEcccHHHHHHHHHHHHHcccccccccccccccEccccccccHHHHHHHHccccccEEEEEEccccEEEEEEccccEEEEEEEEEEccccccccHHHHHHHHHHHHHHcccEEEEEEEcccccccEEEEEEEccccccHHHHHHHHHcccEEEHHHHccccHHHHHHHHHHHHHHHHccHccccccccccccEEEEEEEEcccEEEEEEcccccEEEEEEEEcccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccEEEEEEEEEEccccccccEEEEEEEEccc
mgsekppviyRKGLVKfvnsgdsitlitdpklrtEVTFLFtnvqapkiarrpradgppsaqpedepyAWEAREFLRKLIIGKIVWYtaekpegnryygtlfypnqddditkrscgirrKSRKAIATMAHCSiqtkvrkgklsifscsAKSCIYFACMFLflrtefpptdddITKLLISEGWvslrsknpdllDLENKAkeagkgkystrdepsahvrsinwdpepkqVLDKFGKRIVKAVIDninpgltmrafllpdHYYVAFCLSGIKIVRENEEYGREVRQYLEERILQRDVNVIIESVQNEKNRIMNATLIHEGQKMNIGELLVREGFASCNTLLQGVYDEKKLREAEKLAQSERKrrwtnytpkkppkERAAVVLEIINGDGLVIKYVGDTKEEKVFLssikpprpdgaaaggggegkapvvrskplydvpwlYEAREFLRTRLIGKKVMVSEDYAqdardkfpekkcVSVFVGQE
mgsekppviyrkglvkfvnsgdsitlitdpklrteVTFLFtnvqapkiarrpradgppsaqpedepyAWEAREFLRKLIIGKIVWYTAEKPEGNRYYGTlfypnqddditkrsCGIRRKSRKAIATmahcsiqtkvrkgklSIFSCSAKSCIYFACMFLFLRTEFPPTDDDITKLLISegwvslrsknpdlldLENKakeagkgkystrdepsahvrsinwdpepkQVLDKFGKRIVKAVIDNINPGLTMRAFLLPDHYYVAFCLSGIKIVRENEEYGREVRQYleerilqrdvnVIIESVQNEKNRIMNATLIHEGQKMNIGELLVREGFASCNTLLqgvydekklreAEKLaqserkrrwtnytpkkppkerAAVVLEIINGDGLVIKYVGDTKEEKVFlssikpprpdgaaaggggegkapvvrskplydvPWLYEAREFLRTRLIGKKVMVSEDYaqdardkfpekkcVSVFVGQE
MGSEKPPVIYRKGLVKFVNSGDSITLITDPKLRTEVTFLFTNVQAPKIARRPRADGPPSAQPEDEPYAWEAREFLRKLIIGKIVWYTAEKPEGNRYYGTLFYPNQDDDITKRSCGIRRKSRKAIATMAHCSIQTKVRKGKLSIFSCSAKSCIYFACMFLFLRTEFPPTDDDITKLLISEGWVSLRSKNPDLLDLENKAKEAGKGKYSTRDEPSAHVRSINWDPEPKQVLDKFGKRIVKAVIDNINPGLTMRAFLLPDHYYVAFCLSGIKIVRENEEYGREVRQYLEERILQRDVNVIIESVQNEKNRIMNATLIHEGQKMNIGELLVREGFASCNTLLQGVYDEKKLREAEKLAQSERKRRWTNYTPKKPPKERAAVVLEIINGDGLVIKYVGDTKEEKVFLSSIKPPRPDgaaaggggegkaPVVRSKPLYDVPWLYEAREFLRTRLIGKKVMVSEDYAQDARDKFPEKKCVSVFVGQE
*******VIYRKGLVKFVNSGDSITLITDPKLRTEVTFLFTNVQA*********************YAWEAREFLRKLIIGKIVWYTAEKPEGNRYYGTLFYPNQDDDITKRSCGIRRKSRKAIATMAHCSIQTKVRKGKLSIFSCSAKSCIYFACMFLFLRTEFPPTDDDITKLLISEGWVSLR*****************************************QVLDKFGKRIVKAVIDNINPGLTMRAFLLPDHYYVAFCLSGIKIVRENEEYGREVRQYLEERILQRDVNVIIESVQNEKNRIMNATLIHEGQKMNIGELLVREGFASCNTLLQGVYDE******************************AAVVLEIINGDGLVIKYVGDTKEEKVFL***********************VRSKPLYDVPWLYEAREFLRTRLIGKKVMVSEDYAQ*********KCVSVF****
************GLVKFVNSGDSITLITDPKLRTEVTFLFTNVQAP******************EPYAWEAREFLRKLIIGKIVWYTAEKPEGNRYYGTLFYPNQDDDITKRSCGIRRKSRKAIATMAHCSIQTKVRKGKLSIFSCSAKSCIYFACMFLFLRTEFPPTDDDITKLLISEGWVSLRSKNPDLLD******************************EPKQVLDKFGKRIVKAVIDNINPGLTMRAFLLPDHYYVAFCLSGIKIVRE**EYGREVRQYLEERILQRDVNVIIESVQNEKNRIMNATLIHEGQKMNIGELLVREGFASCNTLLQGVYDEKKLREAEKLAQSERKRRWTNYTPKKPPKERAAVVLEIINGDGLVIKYVGDTKEEKVFLSSIKPPR*********************LYDVPWLYEAREFLRTRLIGKKVMVSEDYAQDARDKFPEKKCVSVFVGQ*
MGSEKPPVIYRKGLVKFVNSGDSITLITDPKLRTEVTFLFTNVQAPKI*****************PYAWEAREFLRKLIIGKIVWYTAEKPEGNRYYGTLFYPNQDDDITKRSCGIRRKSRKAIATMAHCSIQTKVRKGKLSIFSCSAKSCIYFACMFLFLRTEFPPTDDDITKLLISEGWVSLRSKNPDLLDLENKAKE**************HVRSINWDPEPKQVLDKFGKRIVKAVIDNINPGLTMRAFLLPDHYYVAFCLSGIKIVRENEEYGREVRQYLEERILQRDVNVIIESVQNEKNRIMNATLIHEGQKMNIGELLVREGFASCNTLLQGVYDEKKLREAEKLAQSERKRRWTNYTPKKPPKERAAVVLEIINGDGLVIKYVGDTKEEKVFLSSIKPPR**************PVVRSKPLYDVPWLYEAREFLRTRLIGKKVMVSEDYAQDARDKFPEKKCVSVFVGQE
********IYRKGLVKFVNSGDSITLITDPKLRTEVTFLFTNVQAPKIA************PEDEPYAWEAREFLRKLIIGKIVWYTAEKPEGNRYYGTLFYPNQDD**TKRSCG***KSRKAIATMAHCSIQTKVRKGKLSIFSCSAKSCIYFACMFLFLRTEFPPTDDDITKLLISEGWVSLRSKNPDLLDLENKAKEAGKGKYSTR**PSAHVRSINWDPEPKQVLDKFGKRIVKAVIDNINPGLTMRAFLLPDHYYVAFCLSGIKIVRENEEYGREVRQYLEERILQRDVNVIIESVQNEKNRIMNATLIHEGQKMNIGELLVREGFASCNTLLQGVYDEKKLREAEKLAQSERKRRWTNYTPKKPPKERAAVVLEIINGDGLVIKYVGDTKEEKVFLSSIKPPR*******************KPLYDVPWLYEAREFLRTRLIGKKVMVSEDYAQDARDKFPEKKCVSVFVGQ*
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGSEKPPVIYRKGLVKFVNSGDSITLITDPKLRTEVTFLFTNVQAPKIARRPRADGPPSAQPEDEPYAWEAREFLRKLIIGKIVWYTAEKPEGNRYYGTLFYPNQDDDITKRSCGIRRKSRKAIATMAHCSIQTKVRKGKLSIFSCSAKSCIYFACMFLFLRTEFPPTDDDITKLLISEGWVSLRSKNPDLLDLENKAKEAGKGKYSTRDEPSAHVRSINWDPEPKQVLDKFGKRIVKAVIDNINPGLTMRAFLLPDHYYVAFCLSGIKIVRENEEYGREVRQYLEERILQRDVNVIIESVQNEKNRIMNATLIHEGQKMNIGELLVREGFASCNTLLQGVYDEKKLREAEKLAQSERKRRWTNYTPKKPPKERAAVVLEIINGDGLVIKYVGDTKEEKVFLSSIKPPRPDGAAAGGGGEGKAPVVRSKPLYDVPWLYEAREFLRTRLIGKKVMVSEDYAQDARDKFPEKKCVSVFVGQE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query480 2.2.26 [Sep-21-2011]
Q7ZT42 897 Staphylococcal nuclease d yes N/A 0.622 0.333 0.358 1e-44
Q66X93 909 Staphylococcal nuclease d yes N/A 0.614 0.324 0.361 1e-44
Q863B3 910 Staphylococcal nuclease d yes N/A 0.614 0.324 0.355 3e-43
Q78PY7 910 Staphylococcal nuclease d yes N/A 0.614 0.324 0.352 5e-43
Q7KZF4 910 Staphylococcal nuclease d yes N/A 0.614 0.324 0.355 6e-43
Q5REU4 910 Staphylococcal nuclease d yes N/A 0.614 0.324 0.355 6e-43
Q9Y7U7 878 Staphylococcal nuclease d yes N/A 0.572 0.313 0.260 5e-13
>sp|Q7ZT42|SND1_DANRE Staphylococcal nuclease domain-containing protein 1 OS=Danio rerio GN=snd1 PE=2 SV=1 Back     alignment and function desciption
 Score =  181 bits (459), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 123/343 (35%), Positives = 193/343 (56%), Gaps = 44/343 (12%)

Query: 168 TDDDITKLLISEGWV-----SLRSKNPD---LLDLENKAKEAGKGKYSTRDEPSAHVRSI 219
           + ++I + L++EG        +R  NP+   L DLE++AK + KG +S     S  +R +
Sbjct: 119 SGENIAESLVAEGLAMVRREGIRGNNPEQVRLCDLEDQAKSSKKGLWS-EGGGSHTIRDL 177

Query: 220 NWDPE-PKQVLDKFGKRIVKAVIDNINPGLTMRAFLLPDHYYVAFCLSGIK---IVREN- 274
            +  E P+  +D   ++ V A+I+++  G  +RA LLPD+Y V   LSGIK     RE  
Sbjct: 178 KYTIENPRNFVDSLHQKPVNAIIEHVRDGCMVRALLLPDYYLVTVMLSGIKSPTFKREAD 237

Query: 275 -----EEYGREVRQYLEERILQRDVNVIIESVQNEKNRIMNATLIHEGQKMNIGELLVRE 329
                E +  E + + E R+LQRDV +I+ES  N+   ++  T++H     NI ELL++E
Sbjct: 238 GSETPEPFAAEAKFFTESRLLQRDVQIILESCPNQ---VILGTILHPNG--NITELLLKE 292

Query: 330 GFASCNTLLQGVYDE--KKLREAEKLAQSERKRRWTNY---TPKKPPKER--AAVVLEII 382
           GFA C      VY +  +KLR AE+ A+  + R W +Y   T     K+R   A V++++
Sbjct: 293 GFARCVDWSMAVYTQGAEKLRAAERSAKERKVRIWKDYVAPTANLDQKDRQFVAKVMQVV 352

Query: 383 NGDGLVIKYVGDTKEEKVFLSSIKPPRPDGAAAGGGGEGKAPVVRSKPLYDVPWLYEARE 442
           N D +V+K +   + + + LSSI+PPR +G       + K    R +PLYD+P+++EARE
Sbjct: 353 NADAIVVK-LNSGEYKTIHLSSIRPPRLEGEE-----KNKDKDKRFRPLYDIPYMFEARE 406

Query: 443 FLRTRLIGKKVMVSEDYAQDARD-------KFPEKKCVSVFVG 478
           FLR +LIGKKV V+ DY + A +        FPE+ C +V +G
Sbjct: 407 FLRKKLIGKKVNVTVDYIRAATNAMEMGVPAFPERTCATVTIG 449

Danio rerio (taxid: 7955)
>sp|Q66X93|SND1_RAT Staphylococcal nuclease domain-containing protein 1 OS=Rattus norvegicus GN=Snd1 PE=2 SV=1 Back     alignment and function description
>sp|Q863B3|SND1_BOVIN Staphylococcal nuclease domain-containing protein 1 OS=Bos taurus GN=SND1 PE=1 SV=1 Back     alignment and function description
>sp|Q78PY7|SND1_MOUSE Staphylococcal nuclease domain-containing protein 1 OS=Mus musculus GN=Snd1 PE=1 SV=1 Back     alignment and function description
>sp|Q7KZF4|SND1_HUMAN Staphylococcal nuclease domain-containing protein 1 OS=Homo sapiens GN=SND1 PE=1 SV=1 Back     alignment and function description
>sp|Q5REU4|SND1_PONAB Staphylococcal nuclease domain-containing protein 1 OS=Pongo abelii GN=SND1 PE=2 SV=1 Back     alignment and function description
>sp|Q9Y7U7|SND1_SCHPO Staphylococcal nuclease domain-containing protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=snd1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query480
357609762 895 tudor micrococcal nuclease [Danaus plexi 0.854 0.458 0.363 1e-65
307212670 895 Staphylococcal nuclease domain-containin 0.860 0.461 0.362 7e-64
156391813 897 predicted protein [Nematostella vectensi 0.856 0.458 0.352 9e-64
405976336 1078 hypothetical protein CGI_10026535 [Crass 0.831 0.370 0.363 1e-63
307186383 908 Staphylococcal nuclease domain-containin 0.864 0.457 0.358 2e-63
304307739 888 tudor staphylococcus/micrococcal nucleas 0.839 0.453 0.366 3e-63
390345566 894 PREDICTED: staphylococcal nuclease domai 0.864 0.464 0.342 2e-62
340539152 889 Tudor staphylococcal nuclease [Penaeus m 0.839 0.453 0.353 3e-62
195125419 929 GI12526 [Drosophila mojavensis] gi|19391 0.839 0.433 0.347 6e-62
125976920 928 GA20026 [Drosophila pseudoobscura pseudo 0.860 0.445 0.351 2e-61
>gi|357609762|gb|EHJ66647.1| tudor micrococcal nuclease [Danaus plexippus] Back     alignment and taxonomy information
 Score =  257 bits (656), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 181/498 (36%), Positives = 262/498 (52%), Gaps = 88/498 (17%)

Query: 1   MGSEKPPVIYRKGLVKFVNSGDSITLITDPKLRT--EVTFLFTNVQAPKIARRPRADGPP 58
           M +  P   Y+ G+VK V SGD+I +   P+     E     + + APK+AR+  A+   
Sbjct: 1   MSAPTPAPAYKIGIVKQVLSGDTIVIRRQPQGGPPPEKVIALSGITAPKLARQRTANN-- 58

Query: 59  SAQPEDEPYAWEAREFLRKLIIGKIVWYTAEKP--EGNRYYGTLFY---PNQDDDITKRS 113
            ++ +DEP+AWEAREFLRK ++GK V +TAEKP     R YG+++    P +D+++T+  
Sbjct: 59  DSETKDEPFAWEAREFLRKKLVGKEVIFTAEKPPNSATREYGSVWAGKDPTKDENMTE-- 116

Query: 114 CGIRRKSRKAIATMAHCSIQTKVRKGKLSIFSCSAKSCIYFACMFLFLRTEFPPTDDDIT 173
                      A +A   +  KVR+G  +I                            + 
Sbjct: 117 -----------ALLAEGFV--KVREGGRNI--------------------------PQLK 137

Query: 174 KLLISEGWVSLRSKNPDLLDLENKAKEAGKGKYSTRDEPSAHVRSINWDPE-PKQVLDKF 232
           +L+                ++E  AK  GKG + T  +   HVR I W  E PKQ ++KF
Sbjct: 138 RLV----------------EIEETAKSQGKGIWGT--DLQNHVRDIKWSVENPKQYVNKF 179

Query: 233 GKRIVKAVIDNINPGLTMRAFLLPDHYYVAFCLSGIKI--VREN---EEYGREVRQYLEE 287
               +KA+I+ +  G T+R  LLPD+  V   LSGI+   V+++   E Y  E R +LE 
Sbjct: 180 NGTPIKAIIEYVRDGSTVRLCLLPDYTPVTLMLSGIRCPAVKQDGDSEPYAEEARFFLES 239

Query: 288 RILQRDVNVIIESVQNEKNRIMNATLIHEGQKMNIGELLVREGFASCNTLLQGVYDE--K 345
           ++LQ+DV V++ESV N  N  +   L  +G   NI E L+R+GF  C      V      
Sbjct: 240 KLLQKDVEVVLESVNN--NNFVGTILHPQG---NIAEALLRQGFGRCVDWSLAVMKSGAM 294

Query: 346 KLREAEKLAQSERKRRWTNYTPKKP-----PKERAAVVLEIINGDGLVIKYVGDTKEEKV 400
            LR+AEK A+  + R WTNY    P      KE  A V+E++NGD LV+K   +  ++K+
Sbjct: 295 TLRQAEKAAKEAKLRIWTNYVSTAPIIPAKDKEFTATVMEVVNGDALVVKMPSNV-QKKI 353

Query: 401 FLSSIKPPRPDGAAAGGGGEGKAPVVRSKPLYDVPWLYEAREFLRTRLIGKKVMVSEDYA 460
           FL+SI+PPR   +    G +   P    KPLYD+PW+YEAREFLR +L+GKKV V+ DY 
Sbjct: 354 FLASIRPPREKNSPDEEGKQSPRP-KGFKPLYDIPWMYEAREFLRKKLVGKKVNVTIDYI 412

Query: 461 QDARDKFPEKKCVSVFVG 478
           Q A+D FPEK C +V  G
Sbjct: 413 QPAKDNFPEKTCCTVMAG 430

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|307212670|gb|EFN88373.1| Staphylococcal nuclease domain-containing protein 1 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|156391813|ref|XP_001635744.1| predicted protein [Nematostella vectensis] gi|156222841|gb|EDO43681.1| predicted protein [Nematostella vectensis] Back     alignment and taxonomy information
>gi|405976336|gb|EKC40848.1| hypothetical protein CGI_10026535 [Crassostrea gigas] Back     alignment and taxonomy information
>gi|307186383|gb|EFN72017.1| Staphylococcal nuclease domain-containing protein 1 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|304307739|ref|NP_001182009.1| tudor staphylococcus/micrococcal nuclease [Bombyx mori] gi|302190082|dbj|BAJ14101.1| tudor staphylococcus/micrococcal nuclease [Bombyx mori] Back     alignment and taxonomy information
>gi|390345566|ref|XP_798852.3| PREDICTED: staphylococcal nuclease domain-containing protein 1-like [Strongylocentrotus purpuratus] Back     alignment and taxonomy information
>gi|340539152|gb|AEK49107.1| Tudor staphylococcal nuclease [Penaeus monodon] Back     alignment and taxonomy information
>gi|195125419|ref|XP_002007176.1| GI12526 [Drosophila mojavensis] gi|193918785|gb|EDW17652.1| GI12526 [Drosophila mojavensis] Back     alignment and taxonomy information
>gi|125976920|ref|XP_001352493.1| GA20026 [Drosophila pseudoobscura pseudoobscura] gi|54641240|gb|EAL29990.1| GA20026 [Drosophila pseudoobscura pseudoobscura] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query480
WB|WBGene00006626 914 tsn-1 [Caenorhabditis elegans 0.643 0.338 0.344 2.9e-57
UNIPROTKB|F1SML4 594 SND1 "Uncharacterized protein" 0.614 0.496 0.358 9.9e-56
RGD|631340 909 Snd1 "staphylococcal nuclease 0.614 0.324 0.364 4.1e-55
UNIPROTKB|Q66X93 909 Snd1 "Staphylococcal nuclease 0.614 0.324 0.364 4.1e-55
ZFIN|ZDB-GENE-030131-3124 913 snd1 "staphylococcal nuclease 0.616 0.324 0.353 2.3e-54
UNIPROTKB|Q863B3 910 SND1 "Staphylococcal nuclease 0.614 0.324 0.361 1.4e-53
UNIPROTKB|Q7KZF4 910 SND1 "Staphylococcal nuclease 0.614 0.324 0.361 1.8e-53
MGI|MGI:1929266 910 Snd1 "staphylococcal nuclease 0.614 0.324 0.352 2.3e-53
UNIPROTKB|E2RH91 910 SND1 "Uncharacterized protein" 0.614 0.324 0.361 9.8e-53
FB|FBgn0035121 926 Tudor-SN "Tudor-SN" [Drosophil 0.491 0.254 0.361 4.3e-50
WB|WBGene00006626 tsn-1 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
 Score = 467 (169.5 bits), Expect = 2.9e-57, Sum P(2) = 2.9e-57
 Identities = 119/345 (34%), Positives = 195/345 (56%)

Query:   159 LFLRTEFPPTDDDITKLLISEGWVSLRS-KNPD-----LLDLENKAKEAGKGKYSTRDEP 212
             ++L    P   +++ +  +S G + +R  K  D     LL+L+ +AK AG+GK+++    
Sbjct:   113 IYLGGTSPADAENVAEGAVSAGLLEVRQGKVADEYSTKLLELQEQAKSAGRGKWNSN--- 169

Query:   213 SAHVRSINWDPE-PKQVLDKFGKRIVKAVIDNINPGLTMRAFLLPDHYYVAFCLSGIKI- 270
             +  +R I W  + P++++DK+ ++ + AVI+ +  G T+RAFLLP+  Y+   LSG++  
Sbjct:   170 AGTIRDIRWVIDNPRELVDKYAQKPIDAVIEMVRDGSTVRAFLLPNFEYITLQLSGVRAP 229

Query:   271 -VRE-N------EEYGREVRQYLEERILQRDVNVIIESVQNEKNRIMNATLIHEGQKMNI 322
               R  N      E +  E + + E R+LQRDV +I+ES  N+ N +   +++H   K NI
Sbjct:   230 STRNPNAADSRAEAFSEEAKFFAESRLLQRDVQIILESTSNQ-NFV--GSIVHP--KGNI 284

Query:   323 GELLVREGFASCNTLLQGVYD--EKKLREAEKLAQSERKRRWTNYTPKKPPK--ERAAV- 377
              E L+REG+A C     G+     +KLR+AE+ A+ +R R W +Y P       +R A  
Sbjct:   285 AESLLREGYAKCVDWSIGLCTGGAQKLRDAERQAKEKRLRLWKSYQPTSSAYSGDRKAFT 344

Query:   378 --VLEIINGDGLVIKYVGDTKEEKVFLSSIKPPRPDXXXXXXXXXXXXPVVRSKPLYDVP 435
               V+EI+  D +V++   D  E K+ LSSI+ PR              P  + +PLYD+P
Sbjct:   345 GKVVEIVLSDAVVVQK-DDGSEVKLHLSSIRLPRESGDDKATGG----PGRQFRPLYDIP 399

Query:   436 WLYEAREFLRTRLIGKKVMVSEDYAQDARDKFPEKKCVSVFVGQE 480
             ++++AREFLR RL+GKKV +  DY Q   + FPEK C ++ +G +
Sbjct:   400 FMFQAREFLRKRLLGKKVQIQIDYVQPKSENFPEKTCATIKIGDQ 444
GO:0016442 "RNA-induced silencing complex" evidence=IEA;IPI
GO:0003676 "nucleic acid binding" evidence=IEA
GO:0016788 "hydrolase activity, acting on ester bonds" evidence=IEA
GO:0031047 "gene silencing by RNA" evidence=IEA
GO:0040010 "positive regulation of growth rate" evidence=IMP
GO:0000003 "reproduction" evidence=IMP
GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP
GO:0035195 "gene silencing by miRNA" evidence=IMP
GO:0005634 "nucleus" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
UNIPROTKB|F1SML4 SND1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
RGD|631340 Snd1 "staphylococcal nuclease and tudor domain containing 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q66X93 Snd1 "Staphylococcal nuclease domain-containing protein 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-3124 snd1 "staphylococcal nuclease domain containing 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q863B3 SND1 "Staphylococcal nuclease domain-containing protein 1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q7KZF4 SND1 "Staphylococcal nuclease domain-containing protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1929266 Snd1 "staphylococcal nuclease and tudor domain containing 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E2RH91 SND1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
FB|FBgn0035121 Tudor-SN "Tudor-SN" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query480
smart00318137 smart00318, SNc, Staphylococcal nuclease homologue 6e-14
smart00318137 smart00318, SNc, Staphylococcal nuclease homologue 7e-14
cd00175129 cd00175, SNc, Staphylococcal nuclease homologues 3e-12
cd00175129 cd00175, SNc, Staphylococcal nuclease homologues 9e-12
smart00318137 smart00318, SNc, Staphylococcal nuclease homologue 5e-08
pfam00565106 pfam00565, SNase, Staphylococcal nuclease homologu 7e-07
cd00175129 cd00175, SNc, Staphylococcal nuclease homologues 9e-06
pfam00565106 pfam00565, SNase, Staphylococcal nuclease homologu 8e-04
>gnl|CDD|214615 smart00318, SNc, Staphylococcal nuclease homologues Back     alignment and domain information 
 Score = 68.4 bits (168), Expect = 6e-14
 Identities = 41/138 (29%), Positives = 63/138 (45%), Gaps = 19/138 (13%)

Query: 236 IVKAVIDNINPGLTMRAFLLPDHYYVAFCLSGIK----------IVRENEEYGREVRQYL 285
           +V+ VID    G T+R   LP    +   LSGI               +E +G E +++L
Sbjct: 6   VVERVID----GDTIR-VRLPKGPLITIRLSGIDAPETARPNKGDGTPDEPFGEEAKEFL 60

Query: 286 EERILQRDVNVIIESVQNEKNRIMNATLIHEGQKMNIGELLVREGFASC-NTLLQGVYDE 344
           ++ +L + V V ++S      R +  T+   G   NI E LV+EG A       +  Y  
Sbjct: 61  KKLLLGKKVQVEVDSKDRY-GRFL-GTVYLNGG-NNIAEELVKEGLAKVYRYADKDEYVY 117

Query: 345 KKLREAEKLAQSERKRRW 362
            +L EAE+ A+  RK  W
Sbjct: 118 DELLEAEEAAKKARKGLW 135

Length = 137
>gnl|CDD|214615 smart00318, SNc, Staphylococcal nuclease homologues Back     alignment and domain information
>gnl|CDD|238102 cd00175, SNc, Staphylococcal nuclease homologues Back     alignment and domain information
>gnl|CDD|238102 cd00175, SNc, Staphylococcal nuclease homologues Back     alignment and domain information
>gnl|CDD|214615 smart00318, SNc, Staphylococcal nuclease homologues Back     alignment and domain information
>gnl|CDD|201310 pfam00565, SNase, Staphylococcal nuclease homologue Back     alignment and domain information
>gnl|CDD|238102 cd00175, SNc, Staphylococcal nuclease homologues Back     alignment and domain information
>gnl|CDD|201310 pfam00565, SNase, Staphylococcal nuclease homologue Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 480
KOG2039|consensus 875 100.0
smart00318138 SNc Staphylococcal nuclease homologues. 99.93
cd00175129 SNc Staphylococcal nuclease homologues. SNase homo 99.92
smart00318138 SNc Staphylococcal nuclease homologues. 99.89
PRK06518177 hypothetical protein; Provisional 99.88
cd00175129 SNc Staphylococcal nuclease homologues. SNase homo 99.87
KOG2039|consensus875 99.87
PRK06518177 hypothetical protein; Provisional 99.84
PF00565108 SNase: Staphylococcal nuclease homologue; InterPro 99.84
COG1525192 Micrococcal nuclease (thermonuclease) homologs [DN 99.8
PF00565108 SNase: Staphylococcal nuclease homologue; InterPro 99.7
COG1525192 Micrococcal nuclease (thermonuclease) homologs [DN 99.7
>KOG2039|consensus Back     alignment and domain information 
Probab=100.00  E-value=1.1e-38  Score=359.56  Aligned_cols=377  Identities=34%  Similarity=0.549  Sum_probs=331.9

Q ss_pred             ceeeEEEEEEeeCCEEEEEeCCCC--CeeEEEEEeeecCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHhhhCCCEEEE
Q psy16181          9 IYRKGLVKFVNSGDSITLITDPKL--RTEVTFLFTNVQAPKIARRPRADGPPSAQPEDEPYAWEAREFLRKLIIGKIVWY   86 (480)
Q Consensus         9 ~~~~g~V~~V~sGDti~v~~~~~~--~~e~~v~l~~I~aP~~~~~~~~~~~~~~~~~~ep~a~eAre~Lr~~~iGk~V~~   86 (480)
                      .+..|.|+.|.|||.+.|+..+..  +++..++|+++.+|++.+++.  +      .|+||+|++++|+|+.++||.|.|
T Consensus         3 ~~~~~~v~~v~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g------~d~p~~~~~~~~~~~~~~~k~~~v   74 (875)
T KOG2039|consen    3 QRLVGYVKAVLSGDAFVIRGSPRAGPPPEFQINLSNVKAPNEARRDK--G------VDEPFAWESREFLRKSEIGKEVAV   74 (875)
T ss_pred             eEEeeeEEEEeccCccEEEcccccCCCCCceEEEeecCCccccccCC--C------CCCCcChhhHHHHHHHhccceeee
Confidence            356799999999999999975433  679999999999999998752  1      289999999999999999999999


Q ss_pred             EEee-c-cCCcEEEEEEccCCCCccccccccccccchhhhhhhcccccccccccCcccccccCcccchhhhhhccccccC
Q psy16181         87 TAEK-P-EGNRYYGTLFYPNQDDDITKRSCGIRRKSRKAIATMAHCSIQTKVRKGKLSIFSCSAKSCIYFACMFLFLRTE  164 (480)
Q Consensus        87 ~~~~-~-~~~r~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (480)
                      +.++ . ..+|.+|.++++                                                             
T Consensus        75 ~~~~~~~~~~~e~~~~~~~-------------------------------------------------------------   93 (875)
T KOG2039|consen   75 TRDQMSANNGREVGFIYLG-------------------------------------------------------------   93 (875)
T ss_pred             EEeeeccccccccceeecC-------------------------------------------------------------
Confidence            9999 3 467999999983                                                             


Q ss_pred             CCCCcccHHHHHHhcCCeEeEccc-------chHHHHHHHHHHhCCCCCCCCCCCCccccccCCCCC-chhhhhhhcCcE
Q psy16181        165 FPPTDDDITKLLISEGWVSLRSKN-------PDLLDLENKAKEAGKGKYSTRDEPSAHVRSINWDPE-PKQVLDKFGKRI  236 (480)
Q Consensus       165 ~~~~~~nv~~~lv~~G~a~v~~~~-------~~l~~~E~~Ak~~~~Giws~~~~~~~~v~~i~~~~~-~~~~l~~~k~k~  236 (480)
                          +.++++.|+.+||+++++..       ..+.+.|..|++.++|+|+..   .+.++++.++.. ++.++..+.+++
T Consensus        94 ----~~~~a~~lv~~g~~~~~~~~~~~~~~~~~l~~~~~~~k~~~~g~w~~~---~~~~~~~~~~~~~p~~~~~~~~~~~  166 (875)
T KOG2039|consen   94 ----DENSAESLVKEGLLDVRDEGVRNSSYFKTLDEVEVQAKQSGRGIWSKL---DHFIRNLKDSALNPAELVDAVGGKP  166 (875)
T ss_pred             ----cchhHHHHHhccCCcccccccccchhhhhhhhhhhhhhhhcccccccc---ccceeeccccccccHHHHHhcCCce
Confidence                36899999999999998652       268899999999999999933   456788888876 899999999999


Q ss_pred             EEEEEEEecCCC-eEEEEecCCeEEEEEEEeeeccCCC----------CchhHHHHHHHHHHHhcCCeEEEEEeeeecCC
Q psy16181        237 VKAVIDNINPGL-TMRAFLLPDHYYVAFCLSGIKIVRE----------NEEYGREVRQYLEERILQRDVNVIIESVQNEK  305 (480)
Q Consensus       237 l~aiVe~V~DGd-tlrV~l~~~~~~I~V~LaGIdaPe~----------~ePfg~EAk~fl~~~LLqR~V~V~l~~~d~Dk  305 (480)
                      +.|+|++|++|+ +.|+++.+.+..++++|+|+.||..          .+||+.+|+.|++.++++|++.+.+++...  
T Consensus       167 ~~~~ve~v~~~~~~~rv~~~p~~~~~~v~lSg~~~P~~~~~s~~~~~~~~~~~~~a~~f~~~~~~~r~~~i~~~~~~~--  244 (875)
T KOG2039|consen  167 VNAIVEHVRDGEDTVRVLLRPELKYVTVRLSGKRCPSQGPPSDGSPSVPDPFADEAKLFSEDRLLQRAVAIPLESEEN--  244 (875)
T ss_pred             eeeehhhccChhhhhhHHhccccceeEEecccccCCCCCCCCCCCCCCCCcHHHHHHHhcccchhhhceeeeeccccc--
Confidence            999999999999 6888777778889999999999952          378999999999999999999999999887  


Q ss_pred             CCeEEEEEEeCCCCCcHHHHHHhhCCeeeeeecCCCCCH---HHHHHHHHHHHHccccc-CCCCCCCCCC------ceee
Q psy16181        306 NRIMNATLIHEGQKMNIGELLVREGFASCNTLLQGVYDE---KKLREAEKLAQSERKRR-WTNYTPKKPP------KERA  375 (480)
Q Consensus       306 ~gr~lg~V~~~~~~~nIa~~LL~~GLA~v~~~~~~~~~~---~~l~~AE~~AK~~k~Gl-W~~~~~~~~~------k~~~  375 (480)
                      +..++|.++++  +++|++.|+.+|++++++|+......   ..++.+|..++..+..+ |+++.++...      +.|.
T Consensus       245 ~~~~~g~v~~~--~~~i~~~~~~~~~~k~v~~s~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~q~~~s~~~~~~~~~~~  322 (875)
T KOG2039|consen  245 YVFFVGDVLYP--DGNIALELLSEGLAKCVDWSKNEIPCGAAKKLRAAERLAKEHRLRVLWKNYQVPLSTSESIDDKGFS  322 (875)
T ss_pred             ccccccccccc--ccceeeehhccchHHHHHhhhhccCchhhhhhhHHhhccchhHHHHHHhccccccchheeecccccc
Confidence            56789999999  77999999999999999999776654   66999999999999999 9999987653      5788


Q ss_pred             EEEEEEEeCCEEEEEEcCCCceEEEEeccCCCCCCCCCCCCCCCCCCCCcccCCCCCCchhHHHHHHHHHHhhcCCEEEE
Q psy16181        376 AVVLEIINGDGLVIKYVGDTKEEKVFLSSIKPPRPDGAAAGGGGEGKAPVVRSKPLYDVPWLYEAREFLRTRLIGKKVMV  455 (480)
Q Consensus       376 g~VveVisgd~l~V~~~~~g~~~rV~Lssir~pr~~~~~~~~g~~~~~~~~~~~~~~~~~~~~eArEfLRk~lIGK~V~v  455 (480)
                      +.|+++..+|++.+...+ |.+.++++++|+.||.++           +.+..+| +..||+++|+||+|++.||+.|.+
T Consensus       323 ~~v~e~~~~d~~~~~~~s-g~~~~~~~~~i~~pr~~~-----------~~~~~~p-~~~~~q~~a~~~~~~~~i~~~v~~  389 (875)
T KOG2039|consen  323 GKVVEVLVSDCVLVALDS-GSENKLFLSSIRLPRAGE-----------PGRSLKP-YISPVQLVAREFLRKKLIGKRVIL  389 (875)
T ss_pred             ceeeeeeccCceEEecCC-CCceEEEeeeccCccccc-----------cccccCC-ccccHHHHhhhhhhhhccCceeeE
Confidence            899999999999999984 889999999999999321           3466778 889999999999999999999999


Q ss_pred             EEeEeecCCCCCCCeeEEEEEeC
Q psy16181        456 SEDYAQDARDKFPEKKCVSVFVG  478 (480)
Q Consensus       456 ~~d~~~~~~~~~~~~~~~tv~~~  478 (480)
                      .++|.++.+++++++.|+....+
T Consensus       390 ~~~~~~~~~~~~~~~~c~~~~~~  412 (875)
T KOG2039|consen  390 QMDVIRPRRENVPTKVCALPLGG  412 (875)
T ss_pred             eeecccccccccccccccccCCC
Confidence            99999999999999999887655

>smart00318 SNc Staphylococcal nuclease homologues Back     alignment and domain information
>cd00175 SNc Staphylococcal nuclease homologues Back     alignment and domain information
>smart00318 SNc Staphylococcal nuclease homologues Back     alignment and domain information
>PRK06518 hypothetical protein; Provisional Back     alignment and domain information
>cd00175 SNc Staphylococcal nuclease homologues Back     alignment and domain information
>KOG2039|consensus Back     alignment and domain information
>PRK06518 hypothetical protein; Provisional Back     alignment and domain information
>PF00565 SNase: Staphylococcal nuclease homologue; InterPro: IPR006021 Staphylococcus aureus nuclease (SNase) homologues, previously thought to be restricted to bacteria and archaea, are also in eukaryotes Back     alignment and domain information
>COG1525 Micrococcal nuclease (thermonuclease) homologs [DNA replication, recombination, and repair] Back     alignment and domain information
>PF00565 SNase: Staphylococcal nuclease homologue; InterPro: IPR006021 Staphylococcus aureus nuclease (SNase) homologues, previously thought to be restricted to bacteria and archaea, are also in eukaryotes Back     alignment and domain information
>COG1525 Micrococcal nuclease (thermonuclease) homologs [DNA replication, recombination, and repair] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query480
3bdl_A 570 Crystal Structure Of A Truncated Human Tudor-Sn Len 5e-14
>pdb|3BDL|A Chain A, Crystal Structure Of A Truncated Human Tudor-Sn Length = 570 Back     alignment and structure 
Iteration: 1

 Score = 75.9 bits (185), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 44/114 (38%), Positives = 66/114 (57%), Gaps = 15/114 (13%)
Query: 372 KERAAVVLEIINGDGLVIKY-VGDTKEEKVFLSSIKPPRPDXXXXXXXXXXXXPVVRSKP 430
           K+  A V++++N D +V+K   GD K   + LSSI+PPR +               + +P
Sbjct: 23  KQFVAKVMQVLNADAIVVKLNSGDYK--TIHLSSIRPPRLEGENTQDKNK------KLRP 74
Query: 431 LYDVPWLYEAREFLRTRLIGKKVMVSEDY------AQDARDKFPEKKCVSVFVG 478
           LYD+P+++EAREFLR +LIGKKV V+ DY      A +    F E+ C +V +G
Sbjct: 75  LYDIPYMFEAREFLRKKLIGKKVNVTVDYIRPASPATETVPAFSERTCATVTIG 128

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query480
3bdl_A 570 Staphylococcal nuclease domain-containing protein 1e-28
3bdl_A 570 Staphylococcal nuclease domain-containing protein 7e-20
3bdl_A 570 Staphylococcal nuclease domain-containing protein 2e-14
3bdl_A570 Staphylococcal nuclease domain-containing protein 3e-14
2wac_A218 CG7008-PA; unknown function, tudor, beta-barrel, n 2e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
2hqx_A246 P100 CO-activator tudor domain; human P100 tudor d 1e-05
4eqp_A143 Thermonuclease; staphylococcal nuclease, hyperstab 1e-05
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens} Length = 570 Back     alignment and structure
 Score =  118 bits (296), Expect = 1e-28
 Identities = 84/371 (22%), Positives = 143/371 (38%), Gaps = 68/371 (18%)

Query: 13  GLVKFVNSGDSITLITDPKLRTEVTFLFTNVQAPKIARRPRADGPPSAQPE-DEPYAWEA 71
             V  V + D+I +  +       T   ++++ P++      D     +P  D PY +EA
Sbjct: 27  AKVMQVLNADAIVVKLNSG--DYKTIHLSSIRPPRLEGENTQDKNKKLRPLYDIPYMFEA 84

Query: 72  REFLRKLIIGK--IVWYTAEKPEGNRYYGTLFYPNQDDDITKRSCGIRRKSRKAIATMAH 129
           REFLRK +IGK   V     +P          +        +R+C         IA    
Sbjct: 85  REFLRKKLIGKKVNVTVDYIRPASPATETVPAFS-------ERTCATVTIGGINIAEAL- 136

Query: 130 CSIQTKVRKGKLSIFSCSAKSCIYFACMFLFLRTEFPPTDDDITKLLISEGWVSLRSKNP 189
                 V KG               A +       +   DD              RS + 
Sbjct: 137 ------VSKG--------------LATVI-----RYRQDDDQ-------------RSSHY 158

Query: 190 D-LLDLENKAKEAGKGKYSTRDEPSAHVRSINWDPEPKQVLDKFGKR--IVKAVIDNINP 246
           D LL  E +A + GKG +S ++ P   V  I+ D +  +    F +R    +AV++ +  
Sbjct: 159 DELLAAEARAIKNGKGLHSKKEVPIHRVADISGDTQKAKQFLPFLQRAGRSEAVVEYVFS 218

Query: 247 GLTMRAFLLPDHYYVAFCLSGIKIVR----------ENEEYGREVRQYLEERILQRDVNV 296
           G  ++ +L  +   + F L+GI+  R          E E +  E   + +E +LQR+V V
Sbjct: 219 GSRLKLYLPKETCLITFLLAGIECPRGARNLPGLVQEGEPFSEEATLFTKELVLQREVEV 278

Query: 297 IIESVQNEKNRIMNATLIHEGQKMNIGELLVREGFASCNTLLQGVYDEKKLREAEKLAQS 356
            +ES+    N I    +       N+  LLV    +  +   +     K L  AE+ A+ 
Sbjct: 279 EVESMDKAGNFIGWLHI----DGANLSVLLVEHALSKVHFTAERSSYYKSLLSAEEAAKQ 334

Query: 357 ERKRRWTNYTP 367
           ++++ W +Y  
Sbjct: 335 KKEKVWAHYEE 345
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens} Length = 570 Back     alignment and structure
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens} Length = 570 Back     alignment and structure
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens} Length = 570 Back     alignment and structure
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster} Length = 218 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B Length = 246 Back     alignment and structure
>4eqp_A Thermonuclease; staphylococcal nuclease, hyperstable, PDTP, ionizable group, hydrolase; HET: THP; 1.35A {Staphylococcus aureus} PDB: 3ero_A* 2rbm_A* 3d8g_A* 3bdc_A* 4f8m_A* 3lx0_A* 3nqt_A* 3nk9_A* 3pmf_A* 3sr1_A* 3t13_A* 3mxp_A* 3r3o_A* 4df7_A* 3np8_A* 3nxw_A* 3oso_A* 3mz5_A* 3mhb_A* 3dhq_A* ... Length = 143 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query480
3bdl_A570 Staphylococcal nuclease domain-containing protein 100.0
3bdl_A 570 Staphylococcal nuclease domain-containing protein 99.97
4eqp_A143 Thermonuclease; staphylococcal nuclease, hyperstab 99.94
4eqp_A143 Thermonuclease; staphylococcal nuclease, hyperstab 99.88
2wac_A218 CG7008-PA; unknown function, tudor, beta-barrel, n 99.59
2wac_A218 CG7008-PA; unknown function, tudor, beta-barrel, n 99.49
2hqx_A246 P100 CO-activator tudor domain; human P100 tudor d 99.3
2hqx_A246 P100 CO-activator tudor domain; human P100 tudor d 99.17
4b9w_A201 TDRD1, tudor domain-containing protein 1; replicat 96.98
4b9w_A201 TDRD1, tudor domain-containing protein 1; replicat 96.92
4b9x_A226 TDRD1, tudor domain-containing protein 1; replicat 96.91
4b9x_A226 TDRD1, tudor domain-containing protein 1; replicat 96.79
3ntk_A169 Maternal protein tudor; tudor domain, OB-fold, GER 94.68
3ntk_A169 Maternal protein tudor; tudor domain, OB-fold, GER 91.11
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=5.4e-58  Score=497.18  Aligned_cols=392  Identities=23%  Similarity=0.283  Sum_probs=307.2

Q ss_pred             ceeeEEEEEEeeCCEEEEEeCCCCCeeEEEEEeeecCCCCCCCCCCCCC-CCCCCCCChhHHHHHHHHHhhhCCCEEEEE
Q psy16181          9 IYRKGLVKFVNSGDSITLITDPKLRTEVTFLFTNVQAPKIARRPRADGP-PSAQPEDEPYAWEAREFLRKLIIGKIVWYT   87 (480)
Q Consensus         9 ~~~~g~V~~V~sGDti~v~~~~~~~~e~~v~l~~I~aP~~~~~~~~~~~-~~~~~~~ep~a~eAre~Lr~~~iGk~V~~~   87 (480)
                      ..+.|+|++|+|||||+|...+  ..+++|||++|+||++.+.++.+.+ ......++|||+||+||||++|+||+|+|.
T Consensus        23 ~~~~~~V~~V~DGDTi~v~~~~--g~~~~VRL~gIdaPe~~~~~~~~~~~~~~~~~~~p~g~eA~e~L~~~l~gk~V~~~  100 (570)
T 3bdl_A           23 KQFVAKVMQVLNADAIVVKLNS--GDYKTIHLSSIRPPRLEGENTQDKNKKLRPLYDIPYMFEAREFLRKKLIGKKVNVT  100 (570)
T ss_dssp             SEEEEEEEEEETTTEEEEECTT--SCEEEEEETTEECCCCTTSCCGGGTTTCCHHHHSTTHHHHHHHHHHHHTTCEEEEE
T ss_pred             cEEEEEEEEEccCCEEEEECCC--CCEEEEEEEEEcCCCcCCCCCccccccccCcccchhHHHHHHHHHHHhCCCEEEEE
Confidence            5788999999999999998532  3589999999999999754331100 000114699999999999999999999999


Q ss_pred             Eeec-----------cCC-cEEEEEEccCCCCccccccccccccchhhhhhhcccccccccccCcccccccCcccchhhh
Q psy16181         88 AEKP-----------EGN-RYYGTLFYPNQDDDITKRSCGIRRKSRKAIATMAHCSIQTKVRKGKLSIFSCSAKSCIYFA  155 (480)
Q Consensus        88 ~~~~-----------~~~-r~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (480)
                      +++.           .++ |.+++||+                                                     
T Consensus       101 ~~~~~~~~~~~~~~D~yg~R~la~v~~-----------------------------------------------------  127 (570)
T 3bdl_A          101 VDYIRPASPATETVPAFSERTCATVTI-----------------------------------------------------  127 (570)
T ss_dssp             EEEEESSCCCSSCSSSSCCEEEEEEEE-----------------------------------------------------
T ss_pred             EEeeccccccccccCCCCceEEEEEcc-----------------------------------------------------
Confidence            9972           256 88888887                                                     


Q ss_pred             hhccccccCCCCCcccHHHHHHhcCCeEeEcc----------cchHHHHHHHHHHhCCCCCCCCCCCCccccccCCCCC-
Q psy16181        156 CMFLFLRTEFPPTDDDITKLLISEGWVSLRSK----------NPDLLDLENKAKEAGKGKYSTRDEPSAHVRSINWDPE-  224 (480)
Q Consensus       156 ~~~~~~~~~~~~~~~nv~~~lv~~G~a~v~~~----------~~~l~~~E~~Ak~~~~Giws~~~~~~~~v~~i~~~~~-  224 (480)
                                  ++.|||++||++|||+|+++          ++.|++||++||++++|||+..+.+..++++++++.. 
T Consensus       128 ------------~g~~v~~~lv~~G~A~v~~~~~~~~~~~~~~~~l~~aE~~A~~~~~GlW~~~~~~~~~~~d~~~~~~~  195 (570)
T 3bdl_A          128 ------------GGINIAEALVSKGLATVIRYRQDDDQRSSHYDELLAAEARAIKNGKGLHSKKEVPIHRVADISGDTQK  195 (570)
T ss_dssp             ------------TTEEHHHHHHHTTSSEECCCSSTTSCCCTTHHHHHHHHHHHHHTTCGGGCCSCCCCCCCEECTTCHHH
T ss_pred             ------------CCccHHHHHHhCcCEEEEeecCCccccChHHHHHHHHHHHHHHhCCCCCCCCCCCcceeeecCCchHH
Confidence                        46899999999999999763          2379999999999999999997667788999998866 


Q ss_pred             chhhhhhhc-CcEEEEEEEEecCCCeEEEEecCCeEEEEEEEeeeccCC----------CCchhHHHHHHHHHHHhcCCe
Q psy16181        225 PKQVLDKFG-KRIVKAVIDNINPGLTMRAFLLPDHYYVAFCLSGIKIVR----------ENEEYGREVRQYLEERILQRD  293 (480)
Q Consensus       225 ~~~~l~~~k-~k~l~aiVe~V~DGdtlrV~l~~~~~~I~V~LaGIdaPe----------~~ePfg~EAk~fl~~~LLqR~  293 (480)
                      +++|++.++ ++.+.|+|++|.|||||+|.+++++..++|||+|||||+          ..+|||.||++|++++|++|+
T Consensus       196 ~~~~l~~~~~~~~~~~~V~~V~DGDT~~v~~~~~~~~~~vRL~GIdaPe~~~~~~~~~~~~~~~g~eA~~~l~~~l~~r~  275 (570)
T 3bdl_A          196 AKQFLPFLQRAGRSEAVVEYVFSGSRLKLYLPKETCLITFLLAGIECPRGARNLPGLVQEGEPFSEEATLFTKELVLQRE  275 (570)
T ss_dssp             HHHHHHHHHHTCEEEEEEEEESSSSEEEEEETTTTEEEEEEESSEECCCCCEEETTEEECCCTTHHHHHHHHHHHHTTCE
T ss_pred             HHHHHHHHhhCCeeeEEEEEEeCCCEEEEEEcCCCcEEEEEEEEEECCCCCCCCCCCccccChHHHHHHHHHHHHhcCCe
Confidence            899999877 899999999999999999998888999999999999997          368999999999999999999


Q ss_pred             EEEEEeeeecCCCCeEEEEEEeCCCCCcHHHHHHhhCCeeeeeecCCCCCHHHHHHHHHHHHHcccccCCCCCCCCC---
Q psy16181        294 VNVIIESVQNEKNRIMNATLIHEGQKMNIGELLVREGFASCNTLLQGVYDEKKLREAEKLAQSERKRRWTNYTPKKP---  370 (480)
Q Consensus       294 V~V~l~~~d~Dk~gr~lg~V~~~~~~~nIa~~LL~~GLA~v~~~~~~~~~~~~l~~AE~~AK~~k~GlW~~~~~~~~---  370 (480)
                      |+|.+.+.|+  |||++|+|+++  +.||+++||++|||+++....+......|++||++||++++|||+.+.++..   
T Consensus       276 V~~~~~~~D~--ygR~la~v~~~--~~~v~~~Lv~~GlA~~~~~~~~~~~~~~~~~aE~~Ak~~~~GlW~~~~~~~~~~~  351 (570)
T 3bdl_A          276 VEVEVESMDK--AGNFIGWLHID--GANLSVLLVEHALSKVHFTAERSSYYKSLLSAEEAAKQKKEKVWAHYEEQPVEEV  351 (570)
T ss_dssp             EEEEEEEECT--TSCEEEEEEET--TEEHHHHHHHTTSSEECGGGTTSTTHHHHHHHHHHHHHHTCGGGC----------
T ss_pred             EEEEEEeEcC--CCCEEEEEEEC--CEEHHHHHHHcCCcEEEecCCCcchHHHHHHHHHHHHHhCCCCCcccccccchhc
Confidence            9999998766  99999999999  7899999999999999822223333489999999999999999998876521   


Q ss_pred             --------C--ceeeEEEEEEEeCCEEEEEEcCCCc--------eEE-----EEeccCCCCCCCCC-CCCC---------
Q psy16181        371 --------P--KERAAVVLEIINGDGLVIKYVGDTK--------EEK-----VFLSSIKPPRPDGA-AAGG---------  417 (480)
Q Consensus       371 --------~--k~~~g~VveVisgd~l~V~~~~~g~--------~~r-----V~Lssir~pr~~~~-~~~~---------  417 (480)
                              .  ..+.+.|+.|.+.+.|+|+..++..        ...     -.|..+..|+.++. .|++         
T Consensus       352 ~~~~~~~~~~~~~~~V~Vt~V~sp~~Fyvq~~~~~~~l~~l~~~l~~~~~~~~~l~~~~~~~~G~~c~a~~~d~~wyRa~  431 (570)
T 3bdl_A          352 MPVLEEKERSASYKPVFVTEITDDLHFYVQDVETGTQLEKLMENMRNDIASHPPVEGSYAPRRGEFCIAKFVDGEWYRAR  431 (570)
T ss_dssp             CCCCCCSSCCCCCEEEEEEEECTTSEEEEEEGGGHHHHHHHHHHHHHHHHHSCCCTTCCCCCTTCEEEEECTTSCEEEEE
T ss_pred             ccccccCCCCCcEEEEEEEEEECCCeEEEEECCcHHHHHHHHHHHHHHHhcCCCCCCCcCCCcCCEEEEEECCCCEEEEE
Confidence                    1  3468999999999999999974321        000     01112234555532 2221         


Q ss_pred             -----------------CCCCCCCcccCCCC---C---------------------CchhHHHHHHHHHHhhcCCEEEEE
Q psy16181        418 -----------------GGEGKAPVVRSKPL---Y---------------------DVPWLYEAREFLRTRLIGKKVMVS  456 (480)
Q Consensus       418 -----------------g~~~~~~~~~~~~~---~---------------------~~~~~~eArEfLRk~lIGK~V~v~  456 (480)
                                       ||...++..+++||   |                     +..|..+|.+||++.+.||.+.++
T Consensus       432 I~~v~~~~~~~V~fvDyGn~e~v~~~~Lr~l~~~f~~l~lP~qA~~c~La~v~pp~~~~w~~ea~~~f~~lv~~k~l~~~  511 (570)
T 3bdl_A          432 VEKVESPAKIHVFYIDYGNREVLPSTRLGTLSPAFSTRVLPAQATEYAFAFIQVPQDDDARTDAVDSVVRDIQNTQCLLN  511 (570)
T ss_dssp             EEEEEETTEEEEEETTTCCEEEECGGGEECCCGGGSTTTSCCCCEEEEETTEECCSSHHHHHHHHHHHHHHHTTEEEEEE
T ss_pred             EEEEcCCCeEEEEEEeCCCeEEEEHHHCccCCHHHhcCCCCcceEEEEECCeEcCCCCCCcHHHHHHHHHHhCCCEEEEE
Confidence                             66555554444433   1                     246999999999999999999999


Q ss_pred             EeEeecCCCCCCCeeEEEEEe
Q psy16181        457 EDYAQDARDKFPEKKCVSVFV  477 (480)
Q Consensus       457 ~d~~~~~~~~~~~~~~~tv~~  477 (480)
                      |.+..      +...+++++.
T Consensus       512 V~~~~------~~~~~V~L~~  526 (570)
T 3bdl_A          512 VEHLS------AGCPHVTLQF  526 (570)
T ss_dssp             EEECC------SSSCEEEEEE
T ss_pred             EEEEe------CCcEEEEEEE
Confidence            98865      2345565553
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens} Back     alignment and structure
>4eqp_A Thermonuclease; staphylococcal nuclease, hyperstable, PDTP, ionizable group, hydrolase; HET: THP; 1.35A {Staphylococcus aureus} PDB: 3ero_A* 2rbm_A* 3d8g_A* 3bdc_A* 4f8m_A* 3lx0_A* 3nqt_A* 3nk9_A* 3pmf_A* 3sr1_A* 3t13_A* 3mxp_A* 3r3o_A* 4df7_A* 3np8_A* 3nxw_A* 3oso_A* 3mz5_A* 3mhb_A* 3dhq_A* ... Back     alignment and structure
>4eqp_A Thermonuclease; staphylococcal nuclease, hyperstable, PDTP, ionizable group, hydrolase; HET: THP; 1.35A {Staphylococcus aureus} PDB: 3ero_A* 2rbm_A* 3d8g_A* 3bdc_A* 4f8m_A* 3lx0_A* 3nqt_A* 3nk9_A* 3pmf_A* 3sr1_A* 3t13_A* 3mxp_A* 3r3o_A* 4df7_A* 3np8_A* 3nxw_A* 3oso_A* 3mz5_A* 3mhb_A* 3dhq_A* ... Back     alignment and structure
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster} Back     alignment and structure
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster} Back     alignment and structure
>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B Back     alignment and structure
>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B Back     alignment and structure
>4b9w_A TDRD1, tudor domain-containing protein 1; replication; HET: 2MR; 2.10A {Mus musculus} Back     alignment and structure
>4b9w_A TDRD1, tudor domain-containing protein 1; replication; HET: 2MR; 2.10A {Mus musculus} Back     alignment and structure
>4b9x_A TDRD1, tudor domain-containing protein 1; replication; 2.80A {Mus musculus} Back     alignment and structure
>4b9x_A TDRD1, tudor domain-containing protein 1; replication; 2.80A {Mus musculus} Back     alignment and structure
>3ntk_A Maternal protein tudor; tudor domain, OB-fold, GERM cell formation, transcription; 1.80A {Drosophila melanogaster} PDB: 3nth_A* 3nti_A* Back     alignment and structure
>3ntk_A Maternal protein tudor; tudor domain, OB-fold, GERM cell formation, transcription; 1.80A {Drosophila melanogaster} PDB: 3nth_A* 3nti_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 480
d1snoa_136 b.40.1.1 (A:) Staphylococcal nuclease {Staphylococ 2e-04
>d1snoa_ b.40.1.1 (A:) Staphylococcal nuclease {Staphylococcus aureus [TaxId: 1280]} Length = 136 Back     information, alignment and structure

class: All beta proteins
fold: OB-fold
superfamily: Staphylococcal nuclease
family: Staphylococcal nuclease
domain: Staphylococcal nuclease
species: Staphylococcus aureus [TaxId: 1280]

 Score = 39.5 bits (91), Expect = 2e-04
 Identities = 24/133 (18%), Positives = 47/133 (35%), Gaps = 13/133 (9%)

Query: 237 VKAVIDNINPGLTMRAFLLPDHYYVAFCLSGIK------IVRENEEYGREVRQYLEERIL 290
           +   ID    G T++  L+     + F L  +         +  E+YG E   + ++ + 
Sbjct: 9   LIKAID----GDTVK--LMYKGQPMTFRLLLVDTPETKHPKKGVEKYGPEASAFTKKMVE 62

Query: 291 QRDVNVIIESVQNEKNRIMNATLIHEGQKMNIGELLVREGFASCNTL-LQGVYDEKKLRE 349
                 +        ++              + E LVR+G A    +       E+ LR+
Sbjct: 63  NAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKPNNTHEQLLRK 122

Query: 350 AEKLAQSERKRRW 362
           +E  A+ E+   W
Sbjct: 123 SEAQAKKEKLNIW 135

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query480
d1snoa_136 Staphylococcal nuclease {Staphylococcus aureus [Ta 99.92
d1snoa_136 Staphylococcal nuclease {Staphylococcus aureus [Ta 99.9
>d1snoa_ b.40.1.1 (A:) Staphylococcal nuclease {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
class: All beta proteins
fold: OB-fold
superfamily: Staphylococcal nuclease
family: Staphylococcal nuclease
domain: Staphylococcal nuclease
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.92  E-value=6.2e-25  Score=193.30  Aligned_cols=124  Identities=20%  Similarity=0.261  Sum_probs=105.8

Q ss_pred             EEEEEEEEecCCCeEEEEecCCeEEEEEEEeeeccCCC------CchhHHHHHHHHHHHhc-CCeEEEEEeee-ecCCCC
Q psy16181        236 IVKAVIDNINPGLTMRAFLLPDHYYVAFCLSGIKIVRE------NEEYGREVRQYLEERIL-QRDVNVIIESV-QNEKNR  307 (480)
Q Consensus       236 ~l~aiVe~V~DGdtlrV~l~~~~~~I~V~LaGIdaPe~------~ePfg~EAk~fl~~~LL-qR~V~V~l~~~-d~Dk~g  307 (480)
                      .-+|.|.+|+|||||+|..  ++..++|||+||||||.      .+|||.+|++|++++|. ++.|.+.+... ..|+||
T Consensus         4 ~~~a~V~~V~DGDT~~v~~--~~~~~~vRL~GIdaPE~~~~~~~~~~~g~eA~~~l~~ll~~~~~v~~~~~~~~~~D~~g   81 (136)
T d1snoa_           4 KEPATLIKAIDGDTVKLMY--KGQPMTFRLLLVDTPETKHPKKGVEKYGPEASAFTKKMVENAKKIEVEFDKGQRTDKYG   81 (136)
T ss_dssp             EEEEEEEEECSSSEEEEEE--TTEEEEEEETTEECCCSSBTTTBSCTTHHHHHHHHHHHHHTCSCEEEEECSSCSBCTTS
T ss_pred             ccceEEEEEEcCCEEEEEe--CCcEEEEEEEEEcccccccCCcchhhhHHHHHHHHHHHhhcCceeEEEEeccccCCccc
Confidence            4579999999999999964  45678999999999984      57899999999999997 48899888653 346799


Q ss_pred             eEEEEEEeCCCCCcHHHHHHhhCCeeeeeec-CCCCCHHHHHHHHHHHHHcccccCC
Q psy16181        308 IMNATLIHEGQKMNIGELLVREGFASCNTLL-QGVYDEKKLREAEKLAQSERKRRWT  363 (480)
Q Consensus       308 r~lg~V~~~~~~~nIa~~LL~~GLA~v~~~~-~~~~~~~~l~~AE~~AK~~k~GlW~  363 (480)
                      |++|+|+.+  +.|||++||++|||+++... .+......|.+||++||++++|||+
T Consensus        82 R~la~v~~~--g~~l~~~Lv~~G~A~~~~~~~~~~~~~~~l~~ae~~Ak~~~~GlWs  136 (136)
T d1snoa_          82 RGLAYIYAD--GKMVNEALVRQGLAKVAYVYKPNNTHEQLLRKSEAQAKKEKLNIWS  136 (136)
T ss_dssp             CEEEEEEET--TEEHHHHHHHTTSCEECCCBTTBCTTHHHHHHHHHHHHHTTCGGGC
T ss_pred             cceeEEEEe--cchhHHHHHHCCCEEEeeecCCChhHHHHHHHHHHHHHHcCCCCCC
Confidence            999999998  78999999999999987543 3333348899999999999999996
>d1snoa_ b.40.1.1 (A:) Staphylococcal nuclease {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure