Psyllid ID: psy16200

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180---
Protein Sequence
MPTLKLRKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDND
Secondary Structure (PSIPRED)
cccHHHHHccccEEEEcccccccccccccccccccccEEEcccHHHHHHcccccccccccccccccccccEEEEEcccHHHHHHHHHHHHccccEEEEEEccccccccccHHHHHHHHHcccEEEEccccEEEEEcccEEEEEEEEEccccccccEEEccccEEEEEccEEEEcccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHccccEEEEcccccEEcccHHHccccccccEEEHHHHHHHHHHHHccccccccccccccccccEEEEEcccHHHHHHHHHHHHccccEEEEEccccHHHccccHHHHHHHHHcccEEEccEEEEEEEEEccEEEEEEEEEEEEEcccEEEEEEEEEEEEEccEEEEcccEEccccc
Coil and Loop (DISEMBL)
mptlklrkdgyTAIFIGigkpnanvipIFQGlteemgfytsktflprvatsskkglcggckkeslpilkGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKgctniravPEEVQLAWEEkceflpfmspvqvdvkdnkiagmqfnrteqnekgewveDEEQRIKLKANYIISAFgstlldnd
Flexible Loop (DISEMBL)
mptlklrkdgYTAIFigigkpnaNVIPIFQGLTEEMGFYTSKTFLPRVATSskkglcggckkeslpiLKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFnrteqnekgewvEDEEQRIKLKANYIISafgstlldnd
Low Complexity Region (SEG)
MPTLKLRKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATsskkglcggckkeslPILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDND
Disordered region (IsUnstruct)
*******KDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFMSPVQVDVKDNKIAGMQ*****************QRIKLKANYIISAFGST*****
Disordered Region (DISOPRED)
MPTLKLRKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTE*******VEDEEQRIKLKANYIISAF*STL****
Disordered Region (DISEMBL)
MPTLKLRKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQ*********EEQRIKLKANYIISAFGSTLLDND
Disordered Region (DISPRO)
MPTLKLRKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLL***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MPTLKLRKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDND
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	183	2.2.26 [Sep-21-2011]
Q8CHR6	1025	Dihydropyrimidine dehydro	yes	N/A	0.950	0.169	0.670	5e-61
O89000	1025	Dihydropyrimidine dehydro	yes	N/A	0.950	0.169	0.664	2e-60
Q5R895	1025	Dihydropyrimidine dehydro	yes	N/A	0.950	0.169	0.647	2e-59
Q12882	1025	Dihydropyrimidine dehydro	yes	N/A	0.950	0.169	0.647	3e-59
Q28943	1025	Dihydropyrimidine dehydro	yes	N/A	0.950	0.169	0.647	6e-59
Q28007	1025	Dihydropyrimidine dehydro	yes	N/A	0.950	0.169	0.653	2e-57
Q18164	1059	Dihydropyrimidine dehydro	yes	N/A	0.967	0.167	0.601	3e-56
A8XKG6	1053	Probable dihydropyrimidin	N/A	N/A	0.967	0.168	0.601	5e-56
Q6NYG8	1022	Dihydropyrimidine dehydro	yes	N/A	0.950	0.170	0.636	7e-55
Q55FT1	1009	Dihydropyrimidine dehydro	yes	N/A	0.939	0.170	0.545	3e-51

>sp|Q8CHR6|DPYD_MOUSE Dihydropyrimidine dehydrogenase [NADP(+)] OS=Mus musculus GN=Dpyd PE=2 SV=1

 Score =  233 bits (594), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 118/176 (67%), Positives = 136/176 (77%), Gaps = 2/176 (1%)

Query: 6   LRKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESL 65
           L+++GY A FIGIG P      IFQGLT+  GFYTSK FLP VA SSK G+C  C    L
Sbjct: 271 LKENGYRAAFIGIGLPEPKKDHIFQGLTQVQGFYTSKDFLPLVAKSSKTGMCA-CH-SPL 328

Query: 66  PILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFL 125
           P ++G VIVLGAGDTAFDCATSALRCGA +V +VFRKG  NIRAVPEE++LA EEKCEFL
Sbjct: 329 PSIRGAVIVLGAGDTAFDCATSALRCGALRVFIVFRKGFVNIRAVPEEMELAKEEKCEFL 388

Query: 126 PFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLD 181
           PF+SP +V VKD KI  MQF RTEQ+E G WVEDEEQ ++LKA+ +ISAFGS L D
Sbjct: 389 PFLSPRKVIVKDGKIVAMQFVRTEQDETGNWVEDEEQTVRLKADVVISAFGSVLED 444

Involved in pyrimidine base degradation. Catalyzes the reduction of uracil and thymine.
Mus musculus (taxid: 10090)
EC: 1EC: .EC: 3EC: .EC: 1EC: .EC: 2

>sp|O89000|DPYD_RAT Dihydropyrimidine dehydrogenase [NADP(+)] OS=Rattus norvegicus GN=Dpyd PE=2 SV=1

 Score =  231 bits (589), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 117/176 (66%), Positives = 135/176 (76%), Gaps = 2/176 (1%)

Query: 6   LRKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESL 65
           L+++GY A FIGIG P      IFQGLT+  GFYTSK FLP VA  SK G+C  C    L
Sbjct: 271 LKENGYKAAFIGIGLPEPKKDHIFQGLTQVQGFYTSKDFLPLVAKGSKPGMCA-CH-SPL 328

Query: 66  PILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFL 125
           P ++G VIVLGAGDTAFDCATSALRCGA +V +VFRKG  NIRAVPEE++LA EEKCEFL
Sbjct: 329 PSVRGAVIVLGAGDTAFDCATSALRCGARRVFIVFRKGFANIRAVPEEMELAKEEKCEFL 388

Query: 126 PFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLD 181
           PF+SP +V VKD KI GMQF RTEQ+E G WVEDEEQ ++LKA+ +IS FGS L D
Sbjct: 389 PFLSPRKVIVKDGKIVGMQFVRTEQDETGNWVEDEEQIVRLKADVVISPFGSVLDD 444

Involved in pyrimidine base degradation. Catalyzes the reduction of uracil and thymine.

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 2

>sp|Q5R895|DPYD_PONAB Dihydropyrimidine dehydrogenase [NADP(+)] OS=Pongo abelii GN=DPYD PE=2 SV=1

 Score =  228 bits (580), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 114/176 (64%), Positives = 134/176 (76%), Gaps = 2/176 (1%)

Query: 6   LRKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESL 65
           L++ GY A FIGIG P  N   IFQGLT++ GFYTSK FLP VA  SK G+C  C    L
Sbjct: 271 LKEKGYKAAFIGIGLPEPNKDAIFQGLTQDQGFYTSKDFLPLVAKGSKAGMCA-CH-SPL 328

Query: 66  PILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFL 125
           P ++G VIVLGAGDTAFDCATSALRCGA +V +VFRKG  NIRAVPEE++LA EEKCEFL
Sbjct: 329 PSIRGVVIVLGAGDTAFDCATSALRCGARRVFIVFRKGFVNIRAVPEEMELAKEEKCEFL 388

Query: 126 PFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLD 181
           PF+SP +V VK  +I  MQF RTEQ+E G+W EDE+Q + LKA+ +ISAFGS L D
Sbjct: 389 PFLSPRKVIVKGGRIVAMQFVRTEQDETGKWNEDEDQMVHLKADVVISAFGSVLSD 444

Involved in pyrimidine base degradation. Catalyzes the reduction of uracil and thymine.

Pongo abelii (taxid: 9601)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 2

>sp|Q12882|DPYD_HUMAN Dihydropyrimidine dehydrogenase [NADP(+)] OS=Homo sapiens GN=DPYD PE=1 SV=2

 Score =  227 bits (579), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 114/176 (64%), Positives = 134/176 (76%), Gaps = 2/176 (1%)

Query: 6   LRKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESL 65
           L++ GY A FIGIG P  N   IFQGLT++ GFYTSK FLP VA  SK G+C  C    L
Sbjct: 271 LKEKGYKAAFIGIGLPEPNKDAIFQGLTQDQGFYTSKDFLPLVAKGSKAGMCA-CH-SPL 328

Query: 66  PILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFL 125
           P ++G VIVLGAGDTAFDCATSALRCGA +V +VFRKG  NIRAVPEE++LA EEKCEFL
Sbjct: 329 PSIRGVVIVLGAGDTAFDCATSALRCGARRVFIVFRKGFVNIRAVPEEMELAKEEKCEFL 388

Query: 126 PFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLD 181
           PF+SP +V VK  +I  MQF RTEQ+E G+W EDE+Q + LKA+ +ISAFGS L D
Sbjct: 389 PFLSPRKVIVKGGRIVAMQFVRTEQDETGKWNEDEDQMVHLKADVVISAFGSVLSD 444

Involved in pyrimidine base degradation. Catalyzes the reduction of uracil and thymine. Also involved the degradation of the chemotherapeutic drug 5-fluorouracil.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 2

>sp|Q28943|DPYD_PIG Dihydropyrimidine dehydrogenase [NADP(+)] OS=Sus scrofa GN=DPYD PE=1 SV=1

 Score =  226 bits (577), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 114/176 (64%), Positives = 135/176 (76%), Gaps = 2/176 (1%)

Query: 6   LRKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESL 65
           L+++GY A FIGIG P      IFQGLT++ GFYTSK FLP VA SSK G+C  C    L
Sbjct: 271 LKEEGYKAAFIGIGLPEPKTDDIFQGLTQDQGFYTSKDFLPLVAKSSKAGMCA-CH-SPL 328

Query: 66  PILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFL 125
           P ++G VIVLGAGDTAFDCATSALRCGA +V +VFRKG  NIRAVPEEV+LA EEKCEFL
Sbjct: 329 PSIRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFVNIRAVPEEVELAKEEKCEFL 388

Query: 126 PFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLD 181
           PF+SP +V VK  +I  +QF RTEQ+E G+W EDE+Q + LKA+ +ISAFGS L D
Sbjct: 389 PFLSPRKVIVKGGRIVAVQFVRTEQDETGKWNEDEDQIVHLKADVVISAFGSVLRD 444

Involved in pyrimidine base degradation. Catalyzes the reduction of uracil and thymine.

Sus scrofa (taxid: 9823)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 2

>sp|Q28007|DPYD_BOVIN Dihydropyrimidine dehydrogenase [NADP(+)] OS=Bos taurus GN=DPYD PE=1 SV=1

 Score =  221 bits (564), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 115/176 (65%), Positives = 133/176 (75%), Gaps = 2/176 (1%)

Query: 6   LRKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESL 65
           L+++GY A FIGIG P      IFQGLT++ GFYTSK FLP VA SSK G+C  C    L
Sbjct: 271 LKEEGYKAAFIGIGLPEPKKDHIFQGLTQDQGFYTSKDFLPLVAKSSKAGMCA-CHSPLL 329

Query: 66  PILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFL 125
            I +GTVIVLGAGDTAFDCATSALRCGA +V +VFRKG  NIRAVPEEV+LA EEKCEFL
Sbjct: 330 SI-RGTVIVLGAGDTAFDCATSALRCGARRVFIVFRKGFVNIRAVPEEVELAREEKCEFL 388

Query: 126 PFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLD 181
           PF+SP +V VK  +I  MQF RTEQ+E G+W ED +Q   LKA+ +ISAFGS L D
Sbjct: 389 PFLSPRKVIVKGGRIVAMQFVRTEQDETGKWNEDGDQIACLKADVVISAFGSVLSD 444

Involved in pyrimidine base degradation. Catalyzes the reduction of uracil and thymine.

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 2

>sp|Q18164|DPYD_CAEEL Dihydropyrimidine dehydrogenase [NADP(+)] OS=Caenorhabditis elegans GN=dpyd-1 PE=3 SV=2

 Score =  217 bits (553), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 107/178 (60%), Positives = 141/178 (79%), Gaps = 1/178 (0%)

Query: 5   KLRKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKES 64
           KL++ G  A+FIGIG P   + P+F+GLT E GFYTSK +LP VA +SK G+CG CK+  
Sbjct: 283 KLKEQGAAAVFIGIGNPEPKIDPLFEGLTIENGFYTSKNYLPAVAAASKPGMCG-CKRTP 341

Query: 65  LPILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEF 124
           LP ++G V+VLGAGDTA DCATSALRCGA++V + FRKG T IRAVPEE++ A EEKCEF
Sbjct: 342 LPTMRGRVVVLGAGDTAMDCATSALRCGASRVTIAFRKGFTGIRAVPEEMEAAKEEKCEF 401

Query: 125 LPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDN 182
           LPF +P +++VKD +I  ++FN+TEQ++ G+W EDEEQ + LK +Y+ISAFGSTL ++
Sbjct: 402 LPFSAPRKINVKDGRIVSIEFNKTEQDDNGKWYEDEEQIVILKCDYVISAFGSTLKED 459

Involved in pyrimidine base degradation. Catalyzes the reduction of uracil and thymine (By similarity). Involved in the degradation of the chemotherapeutic drug 5-fluorouracil.

Caenorhabditis elegans (taxid: 6239)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 2

>sp|A8XKG6|DPYD_CAEBR Probable dihydropyrimidine dehydrogenase [NADP(+)] OS=Caenorhabditis briggsae GN=dpyd-1 PE=3 SV=2

 Score =  216 bits (551), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 107/178 (60%), Positives = 140/178 (78%), Gaps = 1/178 (0%)

Query: 5   KLRKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKES 64
           KL+  G  A+FIGIG P   + P+F+GLT E GFYTSK +LP VA +SK G+CG CK+  
Sbjct: 283 KLKSQGAAAVFIGIGNPEPKIDPLFEGLTIENGFYTSKNYLPAVAAASKPGMCG-CKRTP 341

Query: 65  LPILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEF 124
           LP ++G V+VLGAGDTA DCATSALRCGA++V + FRKG T IRAVPEE++ A EEKCEF
Sbjct: 342 LPTMRGRVVVLGAGDTAMDCATSALRCGASRVTIAFRKGFTGIRAVPEEMEAAKEEKCEF 401

Query: 125 LPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDN 182
           LPF +P +++VKD +I  ++FN+TEQ++ G+W EDEEQ + LK +Y+ISAFGSTL ++
Sbjct: 402 LPFSAPRKINVKDGRIVSIEFNKTEQDDNGKWYEDEEQIVILKCDYVISAFGSTLKED 459

Involved in pyrimidine base degradation. Catalyzes the reduction of uracil and thymine. Also involved the degradation of the chemotherapeutic drug 5-fluorouracil.

Caenorhabditis briggsae (taxid: 6238)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 2

>sp|Q6NYG8|DPYD_DANRE Dihydropyrimidine dehydrogenase [NADP(+)] OS=Danio rerio GN=dpyd PE=2 SV=1

 Score =  213 bits (541), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 112/176 (63%), Positives = 138/176 (78%), Gaps = 2/176 (1%)

Query: 6   LRKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESL 65
           L+++GY  ++IGIG P AN   IF+GLT E GFYTSK FLP VA +SK G+C  C+ + L
Sbjct: 271 LKEEGYQVVYIGIGLPQANRDKIFEGLTTEQGFYTSKDFLPLVAKASKIGMCN-CRSQ-L 328

Query: 66  PILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFL 125
           P L G VIVLGAGDTAFDCATSALRCGA +V VVFRKG TNIRAVPEE++ A EEKCEFL
Sbjct: 329 PKLHGNVIVLGAGDTAFDCATSALRCGARRVFVVFRKGFTNIRAVPEEMEAAKEEKCEFL 388

Query: 126 PFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLD 181
           PF+SP +V  K+ +++G++F RTEQ + G W+ DEEQ + LKA++IISAFGS L D
Sbjct: 389 PFLSPHEVIKKNGRVSGLRFCRTEQQDDGTWIVDEEQIVHLKADFIISAFGSMLND 444

Involved in pyrimidine base degradation. Catalyzes the reduction of uracil and thymine.

Danio rerio (taxid: 7955)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 2

>sp|Q55FT1|DPYD_DICDI Dihydropyrimidine dehydrogenase [NADP(+)] OS=Dictyostelium discoideum GN=pyd1 PE=2 SV=1

 Score =  201 bits (510), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 95/174 (54%), Positives = 131/174 (75%), Gaps = 2/174 (1%)

Query: 6   LRKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESL 65
           L+K GY AI++GIG P   + P+F  LT + GF++SK FLP+V+ +SK G+CG CK + L
Sbjct: 270 LQKQGYEAIYLGIGMPEPKIDPVFNELTSDQGFFSSKEFLPKVSKASKAGMCG-CKSQ-L 327

Query: 66  PILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFL 125
           P L G VIVLGAGDTAFDCATSA RCGA++V V FR+G +++RAVPEEV +A +E+CEFL
Sbjct: 328 PQLNGRVIVLGAGDTAFDCATSAFRCGASRVTVCFRRGFSDMRAVPEEVDIAKDERCEFL 387

Query: 126 PFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTL 179
           P++ P QV  +D K+  M+F +TE+ + G +  DE+Q  ++K +YIISAFGS +
Sbjct: 388 PYVLPKQVIKRDGKVVAMEFYKTEKGDDGNYSVDEDQFFRVKCDYIISAFGSQI 441

Involved in pyrimidine base degradation. Catalyzes the reduction of uracil and thymine.

Dictyostelium discoideum (taxid: 44689)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 2

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	183
MGI|MGI:2139667	1025	Dpyd "dihydropyrimidine dehydr	0.978	0.174	0.618	1.8e-51
RGD|621218	1025	Dpyd "dihydropyrimidine dehydr	0.950	0.169	0.630	5e-51
UNIPROTKB|O89000	1025	Dpyd "Dihydropyrimidine dehydr	0.950	0.169	0.630	5e-51
UNIPROTKB|Q12882	1025	DPYD "Dihydropyrimidine dehydr	0.950	0.169	0.613	2.8e-50
UNIPROTKB|Q5R895	1025	DPYD "Dihydropyrimidine dehydr	0.950	0.169	0.613	2.8e-50
UNIPROTKB|F1S550	949	DPYD "Dihydropyrimidine dehydr	0.950	0.183	0.607	7.4e-50
UNIPROTKB|F1N549	1025	DPYD "Dihydropyrimidine dehydr	0.950	0.169	0.613	9.8e-50
UNIPROTKB|Q28943	1025	DPYD "Dihydropyrimidine dehydr	0.950	0.169	0.607	9.8e-50
ZFIN|ZDB-GENE-040426-2459	1022	dpydb "dihydropyrimidine dehyd	0.950	0.170	0.602	1.6e-49
FB|FBgn0086450	1031	su(r) "suppressor of rudimenta	0.972	0.172	0.595	2.1e-49

MGI|MGI:2139667 Dpyd "dihydropyrimidine dehydrogenase" [Mus musculus (taxid:10090)]

 Score = 543 (196.2 bits), Expect = 1.8e-51, P = 1.8e-51
 Identities = 112/181 (61%), Positives = 129/181 (71%)

Query:     1 MPTLKLRKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATXXXXXXXXXX 60
             M    L+++GY A FIGIG P      IFQGLT+  GFYTSK FLP VA           
Sbjct:   266 MTLSSLKENGYRAAFIGIGLPEPKKDHIFQGLTQVQGFYTSKDFLPLVAKSSKTGMCACH 325

Query:    61 XXXXXPILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEE 120
                  P ++G VIVLGAGDTAFDCATSALRCGA +V +VFRKG  NIRAVPEE++LA EE
Sbjct:   326 SPL--PSIRGAVIVLGAGDTAFDCATSALRCGALRVFIVFRKGFVNIRAVPEEMELAKEE 383

Query:   121 KCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLL 180
             KCEFLPF+SP +V VKD KI  MQF RTEQ+E G WVEDEEQ ++LKA+ +ISAFGS L 
Sbjct:   384 KCEFLPFLSPRKVIVKDGKIVAMQFVRTEQDETGNWVEDEEQTVRLKADVVISAFGSVLE 443

Query:   181 D 181
             D
Sbjct:   444 D 444

GO:0000166 "nucleotide binding" evidence=IEA

GO:0002058 "uracil binding" evidence=ISO

GO:0003824 "catalytic activity" evidence=IEA

GO:0004152 "dihydroorotate dehydrogenase activity" evidence=IEA

GO:0004158 "dihydroorotate oxidase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005829 "cytosol" evidence=ISO;IDA

GO:0006145 "purine nucleobase catabolic process" evidence=ISO

GO:0006208 "pyrimidine nucleobase catabolic process" evidence=ISO;IDA

GO:0006210 "thymine catabolic process" evidence=ISO

GO:0006212 "uracil catabolic process" evidence=ISO

GO:0006214 "thymidine catabolic process" evidence=ISO

GO:0006222 "UMP biosynthetic process" evidence=IEA

GO:0007584 "response to nutrient" evidence=ISO

GO:0007623 "circadian rhythm" evidence=ISO

GO:0009055 "electron carrier activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0017113 "dihydropyrimidine dehydrogenase (NADP+) activity" evidence=ISO;IDA

GO:0019860 "uracil metabolic process" evidence=ISO

GO:0042493 "response to drug" evidence=ISO

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0050661 "NADP binding" evidence=ISO

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=ISO;IDA

RGD|621218 Dpyd "dihydropyrimidine dehydrogenase" [Rattus norvegicus (taxid:10116)]

 Score = 539 (194.8 bits), Expect = 5.0e-51, P = 5.0e-51
 Identities = 111/176 (63%), Positives = 128/176 (72%)

Query:     6 LRKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATXXXXXXXXXXXXXXX 65
             L+++GY A FIGIG P      IFQGLT+  GFYTSK FLP VA                
Sbjct:   271 LKENGYKAAFIGIGLPEPKKDHIFQGLTQVQGFYTSKDFLPLVAKGSKPGMCACHSPL-- 328

Query:    66 PILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFL 125
             P ++G VIVLGAGDTAFDCATSALRCGA +V +VFRKG  NIRAVPEE++LA EEKCEFL
Sbjct:   329 PSVRGAVIVLGAGDTAFDCATSALRCGARRVFIVFRKGFANIRAVPEEMELAKEEKCEFL 388

Query:   126 PFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLD 181
             PF+SP +V VKD KI GMQF RTEQ+E G WVEDEEQ ++LKA+ +IS FGS L D
Sbjct:   389 PFLSPRKVIVKDGKIVGMQFVRTEQDETGNWVEDEEQIVRLKADVVISPFGSVLDD 444

GO:0002058 "uracil binding" evidence=IDA

GO:0004158 "dihydroorotate oxidase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA;ISO;ISS

GO:0005829 "cytosol" evidence=ISO;IDA

GO:0006145 "purine nucleobase catabolic process" evidence=ISO

GO:0006208 "pyrimidine nucleobase catabolic process" evidence=ISO;IDA;TAS

GO:0006210 "thymine catabolic process" evidence=ISO

GO:0006212 "uracil catabolic process" evidence=ISO;ISS

GO:0006214 "thymidine catabolic process" evidence=ISO;ISS

GO:0006222 "UMP biosynthetic process" evidence=IEA

GO:0007584 "response to nutrient" evidence=IDA

GO:0007623 "circadian rhythm" evidence=IDA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0017113 "dihydropyrimidine dehydrogenase (NADP+) activity" evidence=ISO;ISS;IDA

GO:0019483 "beta-alanine biosynthetic process" evidence=IEA

GO:0019860 "uracil metabolic process" evidence=IDA

GO:0042493 "response to drug" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=ISO;IDA

GO:0046872 "metal ion binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IDA

GO:0051384 "response to glucocorticoid stimulus" evidence=IEP

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=ISO

UNIPROTKB|O89000 Dpyd "Dihydropyrimidine dehydrogenase [NADP(+)]" [Rattus norvegicus (taxid:10116)]

 Score = 539 (194.8 bits), Expect = 5.0e-51, P = 5.0e-51
 Identities = 111/176 (63%), Positives = 128/176 (72%)

Query:     6 LRKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATXXXXXXXXXXXXXXX 65
             L+++GY A FIGIG P      IFQGLT+  GFYTSK FLP VA                
Sbjct:   271 LKENGYKAAFIGIGLPEPKKDHIFQGLTQVQGFYTSKDFLPLVAKGSKPGMCACHSPL-- 328

Query:    66 PILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFL 125
             P ++G VIVLGAGDTAFDCATSALRCGA +V +VFRKG  NIRAVPEE++LA EEKCEFL
Sbjct:   329 PSVRGAVIVLGAGDTAFDCATSALRCGARRVFIVFRKGFANIRAVPEEMELAKEEKCEFL 388

Query:   126 PFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLD 181
             PF+SP +V VKD KI GMQF RTEQ+E G WVEDEEQ ++LKA+ +IS FGS L D
Sbjct:   389 PFLSPRKVIVKDGKIVGMQFVRTEQDETGNWVEDEEQIVRLKADVVISPFGSVLDD 444

GO:0004158 "dihydroorotate oxidase activity" evidence=IEA

GO:0006222 "UMP biosynthetic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

UNIPROTKB|Q12882 DPYD "Dihydropyrimidine dehydrogenase [NADP(+)]" [Homo sapiens (taxid:9606)]

 Score = 532 (192.3 bits), Expect = 2.8e-50, P = 2.8e-50
 Identities = 108/176 (61%), Positives = 127/176 (72%)

Query:     6 LRKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATXXXXXXXXXXXXXXX 65
             L++ GY A FIGIG P  N   IFQGLT++ GFYTSK FLP VA                
Sbjct:   271 LKEKGYKAAFIGIGLPEPNKDAIFQGLTQDQGFYTSKDFLPLVAKGSKAGMCACHSPL-- 328

Query:    66 PILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFL 125
             P ++G VIVLGAGDTAFDCATSALRCGA +V +VFRKG  NIRAVPEE++LA EEKCEFL
Sbjct:   329 PSIRGVVIVLGAGDTAFDCATSALRCGARRVFIVFRKGFVNIRAVPEEMELAKEEKCEFL 388

Query:   126 PFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLD 181
             PF+SP +V VK  +I  MQF RTEQ+E G+W EDE+Q + LKA+ +ISAFGS L D
Sbjct:   389 PFLSPRKVIVKGGRIVAMQFVRTEQDETGKWNEDEDQMVHLKADVVISAFGSVLSD 444

GO:0004158 "dihydroorotate oxidase activity" evidence=IEA

GO:0006222 "UMP biosynthetic process" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA

GO:0019483 "beta-alanine biosynthetic process" evidence=IEA

GO:0017113 "dihydropyrimidine dehydrogenase (NADP+) activity" evidence=ISS;IMP;IDA;TAS

GO:0006212 "uracil catabolic process" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005829 "cytosol" evidence=IDA;TAS

GO:0042803 "protein homodimerization activity" evidence=ISS;IDA

GO:0006145 "purine nucleobase catabolic process" evidence=IMP

GO:0006208 "pyrimidine nucleobase catabolic process" evidence=ISS;IMP

GO:0050660 "flavin adenine dinucleotide binding" evidence=ISS

GO:0050661 "NADP binding" evidence=ISS

GO:0006210 "thymine catabolic process" evidence=IDA

GO:0006214 "thymidine catabolic process" evidence=IDA

GO:0006206 "pyrimidine nucleobase metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0046135 "pyrimidine nucleoside catabolic process" evidence=TAS

GO:0055086 "nucleobase-containing small molecule metabolic process" evidence=TAS

UNIPROTKB|Q5R895 DPYD "Dihydropyrimidine dehydrogenase [NADP(+)]" [Pongo abelii (taxid:9601)]

 Score = 532 (192.3 bits), Expect = 2.8e-50, P = 2.8e-50
 Identities = 108/176 (61%), Positives = 127/176 (72%)

Query:     6 LRKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATXXXXXXXXXXXXXXX 65
             L++ GY A FIGIG P  N   IFQGLT++ GFYTSK FLP VA                
Sbjct:   271 LKEKGYKAAFIGIGLPEPNKDAIFQGLTQDQGFYTSKDFLPLVAKGSKAGMCACHSPL-- 328

Query:    66 PILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFL 125
             P ++G VIVLGAGDTAFDCATSALRCGA +V +VFRKG  NIRAVPEE++LA EEKCEFL
Sbjct:   329 PSIRGVVIVLGAGDTAFDCATSALRCGARRVFIVFRKGFVNIRAVPEEMELAKEEKCEFL 388

Query:   126 PFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLD 181
             PF+SP +V VK  +I  MQF RTEQ+E G+W EDE+Q + LKA+ +ISAFGS L D
Sbjct:   389 PFLSPRKVIVKGGRIVAMQFVRTEQDETGKWNEDEDQMVHLKADVVISAFGSVLSD 444

GO:0005737 "cytoplasm" evidence=ISS

GO:0006212 "uracil catabolic process" evidence=ISS

GO:0006214 "thymidine catabolic process" evidence=ISS

GO:0017113 "dihydropyrimidine dehydrogenase (NADP+) activity" evidence=ISS

UNIPROTKB|F1S550 DPYD "Dihydropyrimidine dehydrogenase [NADP(+)]" [Sus scrofa (taxid:9823)]

 Score = 527 (190.6 bits), Expect = 7.4e-50, P = 7.4e-50
 Identities = 107/176 (60%), Positives = 127/176 (72%)

Query:     6 LRKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATXXXXXXXXXXXXXXX 65
             L+++GY A FIGIG P      IFQGLT++ GFYTSK FLP VA                
Sbjct:   195 LKEEGYKAAFIGIGLPEPKTDDIFQGLTQDQGFYTSKDFLPLVAKSSKAGMCACHSPL-- 252

Query:    66 PILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFL 125
             P ++G VIVLGAGDTAFDCATSALRCGA +V +VFRKG  NIRAVPEEV+LA EEKCEFL
Sbjct:   253 PSIRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFVNIRAVPEEVELAKEEKCEFL 312

Query:   126 PFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLD 181
             PF+SP +V VK  +I  +QF RTEQ+E G+W EDE+Q + LKA+ +ISAFGS L D
Sbjct:   313 PFLSPRKVIVKGGRIVAVQFVRTEQDETGKWNEDEDQIVHLKADVVISAFGSVLRD 368

GO:0006214 "thymidine catabolic process" evidence=IEA

GO:0006212 "uracil catabolic process" evidence=IEA

GO:0006210 "thymine catabolic process" evidence=IEA

GO:0006145 "purine nucleobase catabolic process" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0006222 "UMP biosynthetic process" evidence=IEA

GO:0004158 "dihydroorotate oxidase activity" evidence=IEA

UNIPROTKB|F1N549 DPYD "Dihydropyrimidine dehydrogenase [NADP(+)]" [Bos taurus (taxid:9913)]

 Score = 527 (190.6 bits), Expect = 9.8e-50, P = 9.8e-50
 Identities = 108/176 (61%), Positives = 127/176 (72%)

Query:     6 LRKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATXXXXXXXXXXXXXXX 65
             L+++GY A FIGIG P      IFQGLT++ GFYTSK FLP VA                
Sbjct:   271 LKEEGYKAAFIGIGLPEPKKDHIFQGLTQDQGFYTSKDFLPLVAKSSKAGMCACHSPLLS 330

Query:    66 PILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFL 125
               ++GTVIVLGAGDTAFDCATSALRCGA +V +VFRKG  NIRAVPEEV+LA EEKCEFL
Sbjct:   331 --IRGTVIVLGAGDTAFDCATSALRCGARRVFIVFRKGFVNIRAVPEEVELAREEKCEFL 388

Query:   126 PFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLD 181
             PF+SP +V VK  +I  MQF RTEQ+E G+W EDE+Q + LKA+ +ISAFGS L D
Sbjct:   389 PFLSPRKVIVKGGRIVAMQFVRTEQDETGKWNEDEDQIVCLKADVVISAFGSVLSD 444

GO:0006214 "thymidine catabolic process" evidence=IEA

GO:0006212 "uracil catabolic process" evidence=IEA

GO:0006210 "thymine catabolic process" evidence=IEA

GO:0006145 "purine nucleobase catabolic process" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0006222 "UMP biosynthetic process" evidence=IEA

GO:0004158 "dihydroorotate oxidase activity" evidence=IEA

UNIPROTKB|Q28943 DPYD "Dihydropyrimidine dehydrogenase [NADP(+)]" [Sus scrofa (taxid:9823)]

 Score = 527 (190.6 bits), Expect = 9.8e-50, P = 9.8e-50
 Identities = 107/176 (60%), Positives = 127/176 (72%)

Query:     6 LRKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATXXXXXXXXXXXXXXX 65
             L+++GY A FIGIG P      IFQGLT++ GFYTSK FLP VA                
Sbjct:   271 LKEEGYKAAFIGIGLPEPKTDDIFQGLTQDQGFYTSKDFLPLVAKSSKAGMCACHSPL-- 328

Query:    66 PILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFL 125
             P ++G VIVLGAGDTAFDCATSALRCGA +V +VFRKG  NIRAVPEEV+LA EEKCEFL
Sbjct:   329 PSIRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFVNIRAVPEEVELAKEEKCEFL 388

Query:   126 PFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLD 181
             PF+SP +V VK  +I  +QF RTEQ+E G+W EDE+Q + LKA+ +ISAFGS L D
Sbjct:   389 PFLSPRKVIVKGGRIVAVQFVRTEQDETGKWNEDEDQIVHLKADVVISAFGSVLRD 444

GO:0010181 "FMN binding" evidence=IDA

GO:0017113 "dihydropyrimidine dehydrogenase (NADP+) activity" evidence=ISS;IDA

GO:0006214 "thymidine catabolic process" evidence=ISS

GO:0006212 "uracil catabolic process" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0050661 "NADP binding" evidence=IDA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0019483 "beta-alanine biosynthetic process" evidence=IEA

GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0006222 "UMP biosynthetic process" evidence=IEA

GO:0004158 "dihydroorotate oxidase activity" evidence=IEA

ZFIN|ZDB-GENE-040426-2459 dpydb "dihydropyrimidine dehydrogenase b" [Danio rerio (taxid:7955)]

 Score = 525 (189.9 bits), Expect = 1.6e-49, P = 1.6e-49
 Identities = 106/176 (60%), Positives = 128/176 (72%)

Query:     6 LRKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATXXXXXXXXXXXXXXX 65
             L+++GY  ++IGIG P AN   IF+GLT E GFYTSK FLP VA                
Sbjct:   271 LKEEGYQVVYIGIGLPQANRDKIFEGLTTEQGFYTSKDFLPLVAKASKIGMCNCRSQL-- 328

Query:    66 PILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFL 125
             P L G VIVLGAGDTAFDCATSALRCGA +V VVFRKG TNIRAVPEE++ A EEKCEFL
Sbjct:   329 PKLHGNVIVLGAGDTAFDCATSALRCGARRVFVVFRKGFTNIRAVPEEMEAAKEEKCEFL 388

Query:   126 PFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLD 181
             PF+SP +V  K+ +++G++F RTEQ + G W+ DEEQ + LKA++IISAFGS L D
Sbjct:   389 PFLSPHEVIKKNGRVSGLRFCRTEQQDDGTWIVDEEQIVHLKADFIISAFGSMLND 444

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA;ISS

GO:0003824 "catalytic activity" evidence=IEA

GO:0004152 "dihydroorotate dehydrogenase activity" evidence=IEA

GO:0006222 "UMP biosynthetic process" evidence=IEA

GO:0004158 "dihydroorotate oxidase activity" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0017113 "dihydropyrimidine dehydrogenase (NADP+) activity" evidence=IEA;ISS

GO:0006212 "uracil catabolic process" evidence=ISS

GO:0006214 "thymidine catabolic process" evidence=ISS

GO:0046872 "metal ion binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA

FB|FBgn0086450 su(r) "suppressor of rudimentary" [Drosophila melanogaster (taxid:7227)]

 Score = 524 (189.5 bits), Expect = 2.1e-49, P = 2.1e-49
 Identities = 106/178 (59%), Positives = 123/178 (69%)

Query:     6 LRKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATXXXXXXXXXXXXXXX 65
             L   G+ A+F+GIG P   + PIF GL    GFYTSK FLP V+                
Sbjct:   268 LLSTGHDAVFVGIGLPEPKLNPIFAGLQPSNGFYTSKNFLPLVSDGSKPGLCACKAAAGL 327

Query:    66 PILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFL 125
             P L G VIVLGAGDTAFDCATSALRCGA +V VVFRKG + IRAVPEEV+LA +E+CE L
Sbjct:   328 PKLHGNVIVLGAGDTAFDCATSALRCGARRVFVVFRKGSSGIRAVPEEVELARDERCELL 387

Query:   126 PFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDND 183
             P++SP +V VKD  I  M+F RTEQNE  EWVEDEEQ  +LKAN++ISAFGS L D D
Sbjct:   388 PYLSPRKVIVKDGLITAMEFCRTEQNENDEWVEDEEQTQRLKANFVISAFGSGLEDQD 445

GO:0004159 "dihydrouracil dehydrogenase (NAD+) activity" evidence=TAS

GO:0017113 "dihydropyrimidine dehydrogenase (NADP+) activity" evidence=ISS;NAS

GO:0009055 "electron carrier activity" evidence=IEA

GO:0006222 "UMP biosynthetic process" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0004158 "dihydroorotate oxidase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006207 "'de novo' pyrimidine nucleobase biosynthetic process" evidence=IGI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5R895	DPYD_PONAB	1, ., 3, ., 1, ., 2	0.6477	0.9508	0.1697	yes	N/A
Q6NYG8	DPYD_DANRE	1, ., 3, ., 1, ., 2	0.6363	0.9508	0.1702	yes	N/A
Q28943	DPYD_PIG	1, ., 3, ., 1, ., 2	0.6477	0.9508	0.1697	yes	N/A
Q12882	DPYD_HUMAN	1, ., 3, ., 1, ., 2	0.6477	0.9508	0.1697	yes	N/A
Q55FT1	DPYD_DICDI	1, ., 3, ., 1, ., 2	0.5459	0.9398	0.1704	yes	N/A
Q28007	DPYD_BOVIN	1, ., 3, ., 1, ., 2	0.6534	0.9508	0.1697	yes	N/A
O89000	DPYD_RAT	1, ., 3, ., 1, ., 2	0.6647	0.9508	0.1697	yes	N/A
Q18164	DPYD_CAEEL	1, ., 3, ., 1, ., 2	0.6011	0.9672	0.1671	yes	N/A
Q8CHR6	DPYD_MOUSE	1, ., 3, ., 1, ., 2	0.6704	0.9508	0.1697	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	183
PRK11749	457	PRK11749, PRK11749, dihydropyrimidine dehydrogenas	3e-20
PRK12771	564	PRK12771, PRK12771, putative glutamate synthase (N	5e-16
PRK12831	464	PRK12831, PRK12831, putative oxidoreductase; Provi	7e-14
PRK09853	1019	PRK09853, PRK09853, putative selenate reductase su	1e-13
PRK12778	752	PRK12778, PRK12778, putative bifunctional 2-polypr	1e-13
PRK12775	1006	PRK12775, PRK12775, putative trifunctional 2-polyp	3e-13
COG0493	457	COG0493, GltD, NADPH-dependent glutamate synthase	5e-13
TIGR01318	467	TIGR01318, gltD_gamma_fam, glutamate synthase smal	5e-13
PRK12769	654	PRK12769, PRK12769, putative oxidoreductase Fe-S b	8e-12
TIGR01316	449	TIGR01316, gltA, glutamate synthase (NADPH), homot	3e-11
TIGR03315	1012	TIGR03315, Se_ygfK, putative selenate reductase, Y	3e-11
PRK12810	471	PRK12810, gltD, glutamate synthase subunit beta; R	4e-11
PRK12809	639	PRK12809, PRK12809, putative oxidoreductase Fe-S b	5e-08
PRK12770	352	PRK12770, PRK12770, putative glutamate synthase su	5e-08
PRK12814	652	PRK12814, PRK12814, putative NADPH-dependent gluta	9e-08
PRK12779	944	PRK12779, PRK12779, putative bifunctional glutamat	1e-06
PRK13984	604	PRK13984, PRK13984, putative oxidoreductase; Provi	4e-06

>gnl|CDD|236967 PRK11749, PRK11749, dihydropyrimidine dehydrogenase subunit A; Provisional

 Score = 86.4 bits (215), Expect = 3e-20
 Identities = 59/179 (32%), Positives = 84/179 (46%), Gaps = 23/179 (12%)

Query: 8   KDGYTAIFIGIG--KPNANVIPIFQGLTEEM-GFYTSKTFLPRVATSSKKGLCGGCKKES 64
           + GY A+FIG G   P    IP   G  E + G Y++  FL RV                
Sbjct: 223 RAGYDAVFIGTGAGLPRFLGIP---G--ENLGGVYSAVDFLTRVNQ----------AVAD 267

Query: 65  LPILKG-TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCE 123
             +  G  V+V+G G+TA D A +A R GA  V +V+R+G   + A  EEV+ A EE  E
Sbjct: 268 YDLPVGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGREEMPASEEEVEHAKEEGVE 327

Query: 124 FLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGE----WVEDEEQRIKLKANYIISAFGST 178
           F    +PV++   + ++ G++F R E  E        V  E     L A+ +I A G T
Sbjct: 328 FEWLAAPVEILGDEGRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQT 386

Length = 457

>gnl|CDD|237198 PRK12771, PRK12771, putative glutamate synthase (NADPH) small subunit; Provisional

 Score = 74.5 bits (184), Expect = 5e-16
 Identities = 36/117 (30%), Positives = 62/117 (52%), Gaps = 7/117 (5%)

Query: 65  LPILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEF 124
            P L   V+V+G G+TA D A +A R GA +V +V+R+   ++ A  EE++ A  E  E 
Sbjct: 263 PPFLGKRVVVIGGGNTAMDAARTARRLGAEEVTIVYRRTREDMPAHDEEIEEALREGVEI 322

Query: 125 LPFMSPVQVDVKDNKIAGMQFNRTEQNEKGE--W---VEDEEQRIKLKANYIISAFG 176
               +PV+++  +N   G++    E+ E  E      V  EE+ +  +A+ ++ A G
Sbjct: 323 NWLRTPVEIEGDENGATGLRVITVEKMELDEDGRPSPVTGEEETL--EADLVVLAIG 377

Length = 564

>gnl|CDD|183780 PRK12831, PRK12831, putative oxidoreductase; Provisional

 Score = 68.1 bits (167), Expect = 7e-14
 Identities = 58/183 (31%), Positives = 88/183 (48%), Gaps = 21/183 (11%)

Query: 6   LRKDGYTAIFIGIGKPNANVIPIFQGLTEE--MGFYTSKTFLPRVATSSKKGLCGGCKKE 63
           L ++G+ A+FIG G      +P F G+  E   G +++  FL RV       L    K E
Sbjct: 224 LEEEGFDAVFIGSGAG----LPKFMGIPGENLNGVFSANEFLTRV------NLMKAYKPE 273

Query: 64  S-LPILKGT-VIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEK 121
              PI  G  V V+G G+ A D A +ALR GA +V +V+R+    + A  EEV  A EE 
Sbjct: 274 YDTPIKVGKKVAVVGGGNVAMDAARTALRLGA-EVHIVYRRSEEELPARVEEVHHAKEEG 332

Query: 122 CEFLPFMSPVQVDVKDN-KIAGMQFNRTEQNEKGEW-----VEDEEQRIKLKANYIISAF 175
             F    +PV++   +N  + GM+  + E  E         VE E     L+ + +I + 
Sbjct: 333 VIFDLLTNPVEILGDENGWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSL 392

Query: 176 GST 178
           G++
Sbjct: 393 GTS 395

Length = 464

>gnl|CDD|236630 PRK09853, PRK09853, putative selenate reductase subunit YgfK; Provisional

 Score = 67.7 bits (166), Expect = 1e-13
 Identities = 47/174 (27%), Positives = 77/174 (44%), Gaps = 17/174 (9%)

Query: 5   KLRKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKES 64
           +L+ +GY  + + IG      + +  G         +  FL       K       K  +
Sbjct: 618 QLKNEGYDYVVVAIGADKNGGLKLEGG---NQNVIKALPFLEEY----KN------KGTA 664

Query: 65  LPILKGTVIVLGAGDTAFDCATSALRC-GANKVLVVFRKGCTNIRAVPEEVQLAWEEKCE 123
           L + K  V+V+G G+TA D A +ALR  G  KV VV+R+    + A  EE + A E+  E
Sbjct: 665 LKLGK-HVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKQEMPAWREEYEEALEDGVE 723

Query: 124 FLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEW-VEDEEQRIKLKANYIISAFG 176
           F   ++P   D  D  +        E +E G     +  + + L+A+ +I+A G
Sbjct: 724 FKELLNPESFD-ADGTLTCRVMKLGEPDESGRRRPVETGETVTLEADTVITAIG 776

Length = 1019

>gnl|CDD|237200 PRK12778, PRK12778, putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

 Score = 67.5 bits (165), Expect = 1e-13
 Identities = 45/132 (34%), Positives = 65/132 (49%), Gaps = 14/132 (10%)

Query: 6   LRKDGYTAIFIGIGKPNANVIPIFQGLTEE--MGFYTSKTFLPRVATSSKKGLCGGCKKE 63
           L ++G+  IFI  G      +P F  +  E   G  +S  +L RV       L      +
Sbjct: 513 LEEEGFKGIFIASGAG----LPNFMNIPGENSNGVMSSNEYLTRV------NLMDAASPD 562

Query: 64  S-LPILKG-TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEK 121
           S  PI  G  V V+G G+TA D A +A R GA +V +V+R+    + A  EEV+ A EE 
Sbjct: 563 SDTPIKFGKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSEEEMPARLEEVKHAKEEG 622

Query: 122 CEFLPFMSPVQV 133
            EFL   +P++ 
Sbjct: 623 IEFLTLHNPIEY 634

Length = 752

>gnl|CDD|183738 PRK12775, PRK12775, putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

 Score = 66.9 bits (163), Expect = 3e-13
 Identities = 62/187 (33%), Positives = 90/187 (48%), Gaps = 30/187 (16%)

Query: 6   LRKDGYTAIFIGIGKPNANVIPIFQGLTEEMG--FYTSKTFLPRVATSSKKGLCGGCKKE 63
           +   G+ A+F+G+G       P F G+  E     Y++  FL RV       L GG K  
Sbjct: 513 MNDKGFDAVFLGVGAG----APTFLGIPGEFAGQVYSANEFLTRV------NLMGGDKFP 562

Query: 64  SL--PILKG-TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEE 120
            L  PI  G +V+V+GAG+TA DC   A R GA  V  V+R+      A  EE++ A EE
Sbjct: 563 FLDTPISLGKSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRRSEAEAPARIEEIRHAKEE 622

Query: 121 KCEFLPFMSPVQVDV-KDNKIAGMQFNRTEQNEKGEWVEDEEQR---------IKLKANY 170
             +F    SPV++ V  +  + GM   + E+ E GE   DE+ R           L+ + 
Sbjct: 623 GIDFFFLHSPVEIYVDAEGSVRGM---KVEEMELGE--PDEKGRRKPMPTGEFKDLECDT 677

Query: 171 IISAFGS 177
           +I A G+
Sbjct: 678 VIYALGT 684

Length = 1006

>gnl|CDD|223567 COG0493, GltD, NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

 Score = 65.8 bits (161), Expect = 5e-13
 Identities = 54/185 (29%), Positives = 80/185 (43%), Gaps = 21/185 (11%)

Query: 6   LRKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESL 65
           L K+ Y A+F+  G      + I     +  G   +  FL R+     K + G   ++  
Sbjct: 205 LLKE-YDAVFLATGAGKPRPLDIP--GEDAKGVAFALDFLTRL----NKEVLGDFAEDRT 257

Query: 66  PILKG-TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTN------IRAVPEEVQLAW 118
           P  KG  V+V+G GDTA DCA +ALR GA  V   +R+   +        A   EV+ A 
Sbjct: 258 PPAKGKRVVVIGGGDTAMDCAGTALRLGAKSVTCFYREDRDDETNEWPTWAAQLEVRSAG 317

Query: 119 EEKCEFLPFMSPVQVDVKDN-KIAGMQFNRTEQNE------KGEWVEDEEQRIKLKANYI 171
           EE  E LPF+ P      +  ++ G++F R E  E      +   V          A+ +
Sbjct: 318 EEGVERLPFVQPKAFIGNEGGRVTGVKFGRVEPGEYVDGWGRRGPVGVIGTEKTDAADTV 377

Query: 172 ISAFG 176
           I A G
Sbjct: 378 ILAIG 382

Length = 457

>gnl|CDD|130385 TIGR01318, gltD_gamma_fam, glutamate synthase small subunit family protein, proteobacterial

 Score = 65.6 bits (160), Expect = 5e-13
 Identities = 54/179 (30%), Positives = 81/179 (45%), Gaps = 23/179 (12%)

Query: 11  YTAIFIGIGKPNANVIPIFQGLTEE--MGFYTSKTFLPRVATSSKKGLCGGCKKESLPIL 68
           Y A+F+G+G   +    +  GL  E   G   +  FL     ++ + L G  +    P++
Sbjct: 227 YDAVFLGVGTYRS----MRGGLPGEDAPGVLQALPFL----IANTRQLMGLPESPEEPLI 278

Query: 69  KGT---VIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFL 125
                 V+VLG GDTA DC  +A+R GA  V   +R+   N+     EV  A EE  EFL
Sbjct: 279 DVEGKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDEANMPGSRREVANAREEGVEFL 338

Query: 126 PFMSPVQVDV-KDNKIAGMQFNRTEQNEKG-------EWVEDEEQRIKLKANYIISAFG 176
             + PV ++  +D ++ G+   RT   E           V   E    L A+ +I AFG
Sbjct: 339 FNVQPVYIECDEDGRVTGVGLVRTALGEPDADGRRRPVPVAGSEF--VLPADVVIMAFG 395

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli. Length = 467

>gnl|CDD|183733 PRK12769, PRK12769, putative oxidoreductase Fe-S binding subunit; Reviewed

 Score = 62.5 bits (152), Expect = 8e-12
 Identities = 31/82 (37%), Positives = 47/82 (57%), Gaps = 1/82 (1%)

Query: 72  VIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFMSPV 131
           V+VLG GDTA DC  +ALR GA+ V   +R+   N+    +EV+ A EE   F   + PV
Sbjct: 471 VVVLGGGDTAMDCVRTALRHGASNVTCAYRRDEANMPGSKKEVKNAREEGANFEFNVQPV 530

Query: 132 QVDVKDN-KIAGMQFNRTEQNE 152
            +++ +   + G++F RT   E
Sbjct: 531 ALELNEQGHVCGIRFLRTRLGE 552

Length = 654

>gnl|CDD|130383 TIGR01316, gltA, glutamate synthase (NADPH), homotetrameric

 Score = 60.7 bits (147), Expect = 3e-11
 Identities = 57/186 (30%), Positives = 87/186 (46%), Gaps = 24/186 (12%)

Query: 3   TLKLRKDGYTAIFIGIG--KPNANVIPIFQGLTEEM-GFYTSKTFLPRVATSSKKGLCGG 59
           TL+     Y A+FIG G   P    IP      EE+ G Y++  FL R            
Sbjct: 211 TLEELFSQYDAVFIGTGAGLPKLMNIP-----GEELCGVYSANDFLTRANLMKAYEF--- 262

Query: 60  CKKESLPILKG-TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAW 118
                 P+  G +V+V+G G+TA D A +ALR GA +V  ++R+   ++ A  EE+  A 
Sbjct: 263 -PHADTPVYAGKSVVVIGGGNTAVDSARTALRLGA-EVHCLYRRTREDMTARVEEIAHAE 320

Query: 119 EEKCEFLPFMSPVQVDVKDN-KIAGMQFNRT---EQNEKGEWVE----DEEQRIKLKANY 170
           EE  +F     PV++   +   +  ++F +    EQ + GE       D E   KL+A+ 
Sbjct: 321 EEGVKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAE--CKLEADA 378

Query: 171 IISAFG 176
           +I A G
Sbjct: 379 VIVAIG 384

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH [Amino acid biosynthesis, Glutamate family]. Length = 449

>gnl|CDD|132358 TIGR03315, Se_ygfK, putative selenate reductase, YgfK subunit

 Score = 60.6 bits (147), Expect = 3e-11
 Identities = 48/174 (27%), Positives = 76/174 (43%), Gaps = 20/174 (11%)

Query: 6   LRKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESL 65
           L+  GY  + + IG      + +  G    +    S  FL     + K+G          
Sbjct: 617 LKNQGYKYVILAIGAWKHGPLRLEGGGERVLK---SLEFL----RAFKEG------PTIN 663

Query: 66  PILKGTVIVLGAGDTAFDCATSALRC-GANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEF 124
           P+ K  V+V+G G+TA D A +ALR  G  KV VV+R+    + A  EE++ A E+  +F
Sbjct: 664 PLGK-HVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKRYMPASREELEEALEDGVDF 722

Query: 125 LPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEW--VEDEEQRIKLKANYIISAFG 176
              +SP   +  D  +        E +  G    V   E  + L A+ +I+A G
Sbjct: 723 KELLSPESFE--DGTLTCEVMKLGEPDASGRRRPVGTGET-VDLPADTVIAAVG 773

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase. Length = 1012

>gnl|CDD|237213 PRK12810, gltD, glutamate synthase subunit beta; Reviewed

 Score = 60.2 bits (147), Expect = 4e-11
 Identities = 50/189 (26%), Positives = 73/189 (38%), Gaps = 32/189 (16%)

Query: 5   KLRKDGYTAIFIGIGKPNANVIPI----FQGLTEEMGFYTSKTFLPRVATSSKKGLCGGC 60
           +L  + Y A+F+G G      + I      G+   M F    T   R           G 
Sbjct: 224 ELLAE-YDAVFLGTGAYKPRDLGIPGRDLDGVHFAMDFLIQNT---RR--------VLGD 271

Query: 61  KKESLPILKG-TVIVLGAGDTAFDCATSALRCGANKVLVVF---------RKGCTNIRAV 110
           + E     KG  V+V+G GDT  DC  +A+R GA  V             R         
Sbjct: 272 ETEPFISAKGKHVVVIGGGDTGMDCVGTAIRQGAKSV-TQRDIMPMPPSRRNKNNPWPYW 330

Query: 111 PE--EVQLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKG-EWVEDEEQRIKLK 167
           P   EV  A EE  E    +   + + ++ K+ G++  RTE  E   E VE  E  +   
Sbjct: 331 PMKLEVSNAHEEGVEREFNVQTKEFEGENGKVTGVKVVRTELGEGDFEPVEGSEFVL--P 388

Query: 168 ANYIISAFG 176
           A+ ++ A G
Sbjct: 389 ADLVLLAMG 397

Length = 471

>gnl|CDD|183762 PRK12809, PRK12809, putative oxidoreductase Fe-S binding subunit; Reviewed

 Score = 51.6 bits (123), Expect = 5e-08
 Identities = 49/177 (27%), Positives = 79/177 (44%), Gaps = 19/177 (10%)

Query: 11  YTAIFIGIGKPNANVIPIFQGLTEE--MGFYTSKTFLPRVATSSKKGLCGGCKKESLPI- 67
           Y A+FIG+G        +   L  E   G   +  FL    T+  + L G  + E  P+ 
Sbjct: 396 YDAVFIGVGTYGM----MRADLPHEDAPGVIQALPFL----TAHTRQLMGLPESEEYPLT 447

Query: 68  -LKG-TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFL 125
            ++G  V+VLG GDT  DC  +++R  A  V   +R+   ++    +EV  A EE  EF 
Sbjct: 448 DVEGKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRDEVSMPGSRKEVVNAREEGVEFQ 507

Query: 126 PFMSPVQVDV-KDNKIAGMQFNRTEQNEKGEWVEDEEQRI-----KLKANYIISAFG 176
             + P  +   +D ++  +   RT   E G       + +     +L A+ +I AFG
Sbjct: 508 FNVQPQYIACDEDGRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPADVLIMAFG 564

Length = 639

>gnl|CDD|237197 PRK12770, PRK12770, putative glutamate synthase subunit beta; Provisional

 Score = 51.1 bits (123), Expect = 5e-08
 Identities = 33/123 (26%), Positives = 60/123 (48%), Gaps = 11/123 (8%)

Query: 62  KESLPILKG-TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEE 120
            E +P ++G  V+V+GAG TA D A  A+  GA KV + +R+      A   E++     
Sbjct: 164 WEKVPPVEGKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTINEAPAGKYEIERLIAR 223

Query: 121 KCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEW-------VEDEEQRIKLKANYIIS 173
             EFL  ++PV++ + + ++ G++  +    E  E        +   E    L+A+ ++ 
Sbjct: 224 GVEFLELVTPVRI-IGEGRVEGVELAKMRLGEPDESGRPRPVPIPGSE--FVLEADTVVF 280

Query: 174 AFG 176
           A G
Sbjct: 281 AIG 283

Length = 352

>gnl|CDD|139246 PRK12814, PRK12814, putative NADPH-dependent glutamate synthase small subunit; Provisional

 Score = 50.5 bits (121), Expect = 9e-08
 Identities = 44/175 (25%), Positives = 77/175 (44%), Gaps = 19/175 (10%)

Query: 6   LRKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESL 65
           L+K+ + A+ + +G   A+ + I  G  E  G  +   FL  VA  +             
Sbjct: 275 LQKE-FDAVLLAVGAQKASKMGI-PG-EELPGVISGIDFLRNVALGTA------------ 319

Query: 66  PILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFL 125
                 V+V+G G+TA D A +ALR GA  V +++R+    + A   E++ A  E     
Sbjct: 320 LHPGKKVVVIGGGNTAIDAARTALRLGAESVTILYRRTREEMPANRAEIEEALAEGVSLR 379

Query: 126 PFMSPVQVDVKDNKIA----GMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFG 176
              +PV ++  +  +      MQ    +++ +   V  E     L+A+ +ISA G
Sbjct: 380 ELAAPVSIERSEGGLELTAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIG 434

Length = 652

>gnl|CDD|183740 PRK12779, PRK12779, putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

 Score = 47.1 bits (112), Expect = 1e-06
 Identities = 42/131 (32%), Positives = 62/131 (47%), Gaps = 17/131 (12%)

Query: 6   LRKDGYTAIFIGIGKPNANVIPIFQGLTEE--MGFYTSKTFLPRVATSSKKGLCGGCKKE 63
           L+  G+  IF+G G      +P F  +  E  +G  ++  FL RV       L  G   +
Sbjct: 388 LKAAGFWKIFVGTGAG----LPTFMNVPGEHLLGVMSANEFLTRV------NLMRGLDDD 437

Query: 64  ---SLPILKG-TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWE 119
               LP +KG  V V+G G+TA D A +A R G N V +V+R+  + + A  EE+  A E
Sbjct: 438 YETPLPEVKGKEVFVIGGGNTAMDAARTAKRLGGN-VTIVYRRTKSEMPARVEELHHALE 496

Query: 120 EKCEFLPFMSP 130
           E        +P
Sbjct: 497 EGINLAVLRAP 507

Length = 944

>gnl|CDD|172486 PRK13984, PRK13984, putative oxidoreductase; Provisional

 Score = 45.5 bits (108), Expect = 4e-06
 Identities = 30/115 (26%), Positives = 58/115 (50%), Gaps = 10/115 (8%)

Query: 72  VIVLGAGDTAFDCATSALRC-----GANKVLVVFRKGC-TNIRAVPEEVQLAWEEKCEFL 125
           ++V+G G+ A D A S  R      G   V V   +     + A  EE++   EE     
Sbjct: 421 LVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTSLERTFEEMPADMEEIEEGLEEGVVIY 480

Query: 126 PFMSPVQVDVKDNKIAGMQFNRTEQ--NEKGEWVE--DEEQRIKLKANYIISAFG 176
           P   P++V ++++K+ G++F +  +  +E+G +    DE  +I ++A+ ++ A G
Sbjct: 481 PGWGPMEVVIENDKVKGVKFKKCVEVFDEEGRFNPKFDESDQIIVEADMVVEAIG 535

Length = 604

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	183
PRK12831	464	putative oxidoreductase; Provisional	99.94
PRK12779	944	putative bifunctional glutamate synthase subunit b	99.94
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	99.94
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	99.93
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	99.93
PRK06567	1028	putative bifunctional glutamate synthase subunit b	99.92
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	99.91
PRK12814	652	putative NADPH-dependent glutamate synthase small	99.91
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	99.9
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	99.9
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	99.9
PLN02852	491	ferredoxin-NADP+ reductase	99.9
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	99.89
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	99.89
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	99.87
PRK13984	604	putative oxidoreductase; Provisional	99.87
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	99.85
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	99.85
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	99.84
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	99.83
PRK12770	352	putative glutamate synthase subunit beta; Provisio	99.82
PRK06370	463	mercuric reductase; Validated	99.8
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	99.79
TIGR02053	463	MerA mercuric reductase. This model represents the	99.78
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	99.78
PRK07846	451	mycothione reductase; Reviewed	99.77
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	99.77
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	99.77
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	99.77
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	99.77
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	99.77
PRK10262	321	thioredoxin reductase; Provisional	99.76
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	99.76
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	99.75
KOG0399|consensus	2142		99.75
PLN02507	499	glutathione reductase	99.75
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	99.75
PRK07845	466	flavoprotein disulfide reductase; Reviewed	99.75
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	99.75
PTZ00058	561	glutathione reductase; Provisional	99.75
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	99.74
KOG0404|consensus	322		99.74
PTZ00153	659	lipoamide dehydrogenase; Provisional	99.74
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	99.74
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	99.73
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	99.73
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	99.73
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	99.72
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	99.72
PRK06116	450	glutathione reductase; Validated	99.72
PRK14727	479	putative mercuric reductase; Provisional	99.72
PRK14989	847	nitrite reductase subunit NirD; Provisional	99.72
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	99.72
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	99.72
PLN02546	558	glutathione reductase	99.71
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	99.71
PRK13748	561	putative mercuric reductase; Provisional	99.71
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	99.7
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	99.7
PTZ00052	499	thioredoxin reductase; Provisional	99.7
PRK14694	468	putative mercuric reductase; Provisional	99.7
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	99.7
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	99.69
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	99.69
KOG1335|consensus	506		99.66
PRK09564	444	coenzyme A disulfide reductase; Reviewed	99.65
PTZ00188	506	adrenodoxin reductase; Provisional	99.65
PRK13512	438	coenzyme A disulfide reductase; Provisional	99.64
KOG0405|consensus	478		99.64
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	99.63
KOG1336|consensus	478		99.61
KOG4716|consensus	503		99.59
KOG1800|consensus	468		99.58
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	99.56
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	99.54
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	99.48
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	99.47
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	99.44
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	99.43
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	99.37
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	99.36
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	99.28
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	99.23
KOG1346|consensus	659		99.16
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	99.0
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	98.93
KOG2495|consensus	491		98.85
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	98.75
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	98.72
KOG1399|consensus	448		98.7
PRK09564	444	coenzyme A disulfide reductase; Reviewed	98.66
PRK13512	438	coenzyme A disulfide reductase; Provisional	98.55
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	98.48
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	98.47
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	98.43
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	98.43
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	98.41
COG2081	408	Predicted flavoproteins [General function predicti	98.38
PRK12770	352	putative glutamate synthase subunit beta; Provisio	98.36
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	98.34
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	98.31
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	98.3
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	98.29
PRK10262	321	thioredoxin reductase; Provisional	98.28
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	98.27
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	98.24
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.23
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	98.23
PRK06847	375	hypothetical protein; Provisional	98.23
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	98.22
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	98.21
PRK07236	386	hypothetical protein; Provisional	98.2
PRK08244	493	hypothetical protein; Provisional	98.2
PRK07845	466	flavoprotein disulfide reductase; Reviewed	98.19
PRK12779	944	putative bifunctional glutamate synthase subunit b	98.19
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	98.19
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	98.18
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	98.18
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	98.17
PRK06184	502	hypothetical protein; Provisional	98.17
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	98.17
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	98.15
PRK12831	464	putative oxidoreductase; Provisional	98.15
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	98.14
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	98.13
PRK06185	407	hypothetical protein; Provisional	98.12
PRK06834	488	hypothetical protein; Provisional	98.11
PRK14989	847	nitrite reductase subunit NirD; Provisional	98.1
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	98.1
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.08
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	98.07
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	98.06
PRK08274	466	tricarballylate dehydrogenase; Validated	98.06
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	98.04
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	98.03
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	98.02
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	98.02
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	98.02
PRK10015	429	oxidoreductase; Provisional	98.01
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	98.01
PRK06126	545	hypothetical protein; Provisional	98.0
PRK10157	428	putative oxidoreductase FixC; Provisional	97.99
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	97.99
PLN02463	447	lycopene beta cyclase	97.98
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	97.98
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	97.96
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	97.95
PRK08163	396	salicylate hydroxylase; Provisional	97.95
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	97.95
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	97.95
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	97.95
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	97.95
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	97.94
PRK07588	391	hypothetical protein; Provisional	97.93
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	97.91
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	97.9
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	97.9
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	97.9
PRK05868	372	hypothetical protein; Validated	97.89
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	97.89
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	97.88
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	97.88
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	97.88
PRK06475	400	salicylate hydroxylase; Provisional	97.87
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	97.87
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	97.87
PRK08132	547	FAD-dependent oxidoreductase; Provisional	97.87
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	97.86
PRK09126	392	hypothetical protein; Provisional	97.86
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	97.86
PRK11445	351	putative oxidoreductase; Provisional	97.86
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	97.84
PRK12814	652	putative NADPH-dependent glutamate synthase small	97.83
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	97.81
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	97.81
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	97.81
PLN02852	491	ferredoxin-NADP+ reductase	97.8
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	97.79
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	97.79
PRK14694	468	putative mercuric reductase; Provisional	97.79
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	97.78
PRK07190	487	hypothetical protein; Provisional	97.78
PRK06753	373	hypothetical protein; Provisional	97.77
COG0578	532	GlpA Glycerol-3-phosphate dehydrogenase [Energy pr	97.76
PLN02985	514	squalene monooxygenase	97.75
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	97.75
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	97.74
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	97.74
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	97.71
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	97.71
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	97.7
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	97.69
PRK07045	388	putative monooxygenase; Reviewed	97.69
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	97.68
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	97.68
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	97.68
PRK06116	450	glutathione reductase; Validated	97.68
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	97.67
COG0579	429	Predicted dehydrogenase [General function predicti	97.66
PRK07121	492	hypothetical protein; Validated	97.65
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	97.65
PRK06370	463	mercuric reductase; Validated	97.64
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	97.64
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	97.64
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	97.63
PRK13748	561	putative mercuric reductase; Provisional	97.62
PRK06175	433	L-aspartate oxidase; Provisional	97.62
PRK13984	604	putative oxidoreductase; Provisional	97.61
PRK06996	398	hypothetical protein; Provisional	97.61
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	97.61
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	97.6
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	97.6
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	97.6
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	97.6
PRK08013	400	oxidoreductase; Provisional	97.6
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	97.58
PRK14727	479	putative mercuric reductase; Provisional	97.57
PLN02661	357	Putative thiazole synthesis	97.56
PLN02464	627	glycerol-3-phosphate dehydrogenase	97.56
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	97.56
TIGR02053	463	MerA mercuric reductase. This model represents the	97.55
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	97.55
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	97.54
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	97.54
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	97.54
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	97.52
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	97.51
PRK07538	413	hypothetical protein; Provisional	97.5
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	97.5
PRK08275	554	putative oxidoreductase; Provisional	97.5
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	97.49
TIGR00275	400	flavoprotein, HI0933 family. The model when search	97.48
PRK06567	1028	putative bifunctional glutamate synthase subunit b	97.47
KOG1399|consensus	448		97.46
PLN02507	499	glutathione reductase	97.45
PLN02697	529	lycopene epsilon cyclase	97.45
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	97.44
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	97.42
PRK09897	534	hypothetical protein; Provisional	97.42
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	97.42
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	97.41
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	97.41
PRK08401	466	L-aspartate oxidase; Provisional	97.41
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	97.39
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	97.37
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	97.37
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	97.37
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	97.36
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	97.35
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	97.35
PRK07804	541	L-aspartate oxidase; Provisional	97.34
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.33
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	97.33
PRK08071	510	L-aspartate oxidase; Provisional	97.33
PRK12845	564	3-ketosteroid-delta-1-dehydrogenase; Reviewed	97.29
PRK07395	553	L-aspartate oxidase; Provisional	97.29
PRK12842	574	putative succinate dehydrogenase; Reviewed	97.28
KOG1298|consensus	509		97.26
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	97.23
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	97.22
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	97.19
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	97.18
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	97.15
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	97.14
PTZ00052	499	thioredoxin reductase; Provisional	97.13
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	97.13
PRK07512	513	L-aspartate oxidase; Provisional	97.11
PLN02815	594	L-aspartate oxidase	97.08
PLN02546	558	glutathione reductase	97.07
PRK08294	634	phenol 2-monooxygenase; Provisional	97.07
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	97.06
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	97.05
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	97.05
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	97.02
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	97.01
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	96.99
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	96.99
KOG0029|consensus	501		96.99
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	96.98
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	96.96
KOG1336|consensus	478		96.93
KOG2404|consensus	477		96.92
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	96.89
PRK09077	536	L-aspartate oxidase; Provisional	96.86
KOG0399|consensus	2142		96.83
PRK07233	434	hypothetical protein; Provisional	96.81
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	96.76
PRK11883	451	protoporphyrinogen oxidase; Reviewed	96.76
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	96.75
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	96.73
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	96.69
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	96.68
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	96.63
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	96.61
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	96.55
PTZ00188	506	adrenodoxin reductase; Provisional	96.54
KOG2852|consensus	380		96.54
PLN02268	435	probable polyamine oxidase	96.49
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	96.48
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	96.46
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	96.45
PRK06719	157	precorrin-2 dehydrogenase; Validated	96.42
KOG2311|consensus	679		96.41
PRK11728	393	hydroxyglutarate oxidase; Provisional	96.4
PRK07208	479	hypothetical protein; Provisional	96.35
PRK05562	223	precorrin-2 dehydrogenase; Provisional	96.33
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	96.33
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	96.33
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	96.31
COG0562	374	Glf UDP-galactopyranose mutase [Cell envelope biog	96.21
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	96.18
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	96.17
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	96.16
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	96.15
PLN02576	496	protoporphyrinogen oxidase	96.13
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	96.13
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	96.12
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	96.12
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	96.11
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	96.1
PRK12416	463	protoporphyrinogen oxidase; Provisional	96.1
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	96.09
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	96.09
KOG0042|consensus	680		96.06
COG3349	485	Uncharacterized conserved protein [Function unknow	96.05
PF06039	488	Mqo: Malate:quinone oxidoreductase (Mqo); InterPro	96.03
PRK07846	451	mycothione reductase; Reviewed	96.02
KOG2495|consensus	491		95.97
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	95.95
COG1648	210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	95.95
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	95.92
TIGR00031	377	UDP-GALP_mutase UDP-galactopyranose mutase. The ge	95.88
KOG2415|consensus	621		95.86
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.83
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	95.8
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	95.8
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	95.8
COG3573	552	Predicted oxidoreductase [General function predict	95.78
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	95.71
COG1053	562	SdhA Succinate dehydrogenase/fumarate reductase, f	95.7
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	95.67
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.64
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	95.61
PRK15116	268	sulfur acceptor protein CsdL; Provisional	95.54
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.51
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.5
PLN02676	487	polyamine oxidase	95.49
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	95.43
PTZ00367	567	squalene epoxidase; Provisional	95.4
KOG0685|consensus	498		95.4
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	95.38
PLN02529	738	lysine-specific histone demethylase 1	95.38
KOG2614|consensus	420		95.37
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	95.37
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	95.36
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	95.35
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	95.33
PTZ00383	497	malate:quinone oxidoreductase; Provisional	95.32
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	95.2
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	95.19
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	95.19
KOG2844|consensus	856		95.19
PLN02612	567	phytoene desaturase	95.13
PRK13977	576	myosin-cross-reactive antigen; Provisional	95.1
PRK05257	494	malate:quinone oxidoreductase; Validated	95.08
PLN02328	808	lysine-specific histone demethylase 1 homolog	95.06
PRK09897	534	hypothetical protein; Provisional	95.04
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	95.01
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	95.01
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	95.0
PLN02487	569	zeta-carotene desaturase	94.94
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	94.89
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	94.88
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	94.83
PLN02568	539	polyamine oxidase	94.82
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	94.8
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.8
PRK10637	457	cysG siroheme synthase; Provisional	94.76
PRK12837	513	3-ketosteroid-delta-1-dehydrogenase; Provisional	94.75
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	94.73
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.69
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	94.69
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.69
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.68
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	94.68
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.66
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	94.66
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.64
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	94.61
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	94.58
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	94.56
cd01484	234	E1-2_like Ubiquitin activating enzyme (E1), repeat	94.55
PRK13339	497	malate:quinone oxidoreductase; Reviewed	94.54
KOG4716|consensus	503		94.53
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	94.53
KOG2820|consensus	399		94.53
PLN03000	881	amine oxidase	94.52
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	94.5
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	94.45
PRK08328	231	hypothetical protein; Provisional	94.44
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	94.42
cd01489	312	Uba2_SUMO Ubiquitin activating enzyme (E1) subunit	94.4
KOG2013|consensus	603		94.38
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	94.37
PRK12842	574	putative succinate dehydrogenase; Reviewed	94.32
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.3
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	94.29
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	94.29
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	94.28
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	94.26
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	94.24
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	94.23
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	94.22
KOG0405|consensus	478		94.18
cd01488	291	Uba3_RUB Ubiquitin activating enzyme (E1) subunit	94.18
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	94.14
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	94.13
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	94.11
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	94.07
PTZ00058	561	glutathione reductase; Provisional	94.06
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	94.05
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.04
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	94.04
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	94.01
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	93.99
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	93.99
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	93.97
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	93.96
PF08659	181	KR: KR domain; InterPro: IPR013968 This domain is	93.95
KOG3851|consensus	446		93.93
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	93.93
PRK13977	576	myosin-cross-reactive antigen; Provisional	93.85
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	93.84
cd01486	307	Apg7 Apg7 is an E1-like protein, that activates tw	93.83
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	93.82
PRK12548	289	shikimate 5-dehydrogenase; Provisional	93.8
TIGR01087	433	murD UDP-N-acetylmuramoylalanine--D-glutamate liga	93.79
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	93.74
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	93.71
PRK08306	296	dipicolinate synthase subunit A; Reviewed	93.7
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	93.7
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	93.7
PRK08223	287	hypothetical protein; Validated	93.68
TIGR01082	448	murC UDP-N-acetylmuramate--alanine ligase. UDP-N-a	93.61
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	93.59
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	93.57
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	93.47
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	93.46
COG1231	450	Monoamine oxidase [Amino acid transport and metabo	93.45
KOG0404|consensus	322		93.45
COG0569	225	TrkA K+ transport systems, NAD-binding component [	93.43
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	93.42
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	93.42
PRK14191	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.41
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	93.36
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	93.34
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	93.33
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	93.33
TIGR01816	565	sdhA_forward succinate dehydrogenase, flavoprotein	93.32
PRK00676	338	hemA glutamyl-tRNA reductase; Validated	93.28
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	93.26
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	93.25
COG1206	439	Gid NAD(FAD)-utilizing enzyme possibly involved in	93.24
TIGR03377	516	glycerol3P_GlpA glycerol-3-phosphate dehydrogenase	93.24
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	93.24
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	93.22
COG3075	421	GlpB Anaerobic glycerol-3-phosphate dehydrogenase	93.19
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	93.12
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	93.06
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	93.03
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	93.02
PRK06153	393	hypothetical protein; Provisional	93.01
COG2907	447	Predicted NAD/FAD-binding protein [General functio	92.99
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	92.96
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	92.95
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	92.94
cd01076	227	NAD_bind_1_Glu_DH NAD(P) binding domain of glutama	92.87
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	92.86
TIGR01381	664	E1_like_apg7 E1-like protein-activating enzyme Gsa	92.86
PRK03803	448	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.83
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	92.82
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	92.8
cd01490	435	Ube1_repeat2 Ubiquitin activating enzyme (E1), rep	92.79
PRK14189	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	92.76
cd01491	286	Ube1_repeat1 Ubiquitin activating enzyme (E1), rep	92.72
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	92.72
PRK14573	809	bifunctional D-alanyl-alanine synthetase A/UDP-N-a	92.69
KOG1276|consensus	491		92.66
PRK15181	348	Vi polysaccharide biosynthesis protein TviC; Provi	92.64
PRK04148	134	hypothetical protein; Provisional	92.62
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	92.62
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	92.6
PTZ00075	476	Adenosylhomocysteinase; Provisional	92.54
KOG0024|consensus	354		92.53
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	92.43
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	92.39
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	92.37
TIGR03862	376	flavo_PP4765 uncharacterized flavoprotein, PP_4765	92.34
PLN02494	477	adenosylhomocysteinase	92.31
PRK06057	255	short chain dehydrogenase; Provisional	92.29

>PRK12831 putative oxidoreductase; Provisional

Probab=99.94  E-value=3.3e-25  Score=190.07  Aligned_cols=174  Identities=28%  Similarity=0.386  Sum_probs=134.9

Q ss_pred             ChhhhhhC-CCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChh
Q psy16200          2 PTLKLRKD-GYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDT   80 (183)
Q Consensus         2 ~~~~l~~~-~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~   80 (183)
                      +.+++.+. +||+||||||++.|+.|++| | .+.+||+++.+|+...+...  .++..+.  .....+++|+|||||++
T Consensus       219 ~~~~~~~~~~~d~viiAtGa~~~~~l~ip-G-~~~~gV~~~~~~l~~~~~~~--~~~~~~~--~~~~~gk~VvVIGgG~v  292 (464)
T PRK12831        219 TIDELLEEEGFDAVFIGSGAGLPKFMGIP-G-ENLNGVFSANEFLTRVNLMK--AYKPEYD--TPIKVGKKVAVVGGGNV  292 (464)
T ss_pred             CHHHHHhccCCCEEEEeCCCCCCCCCCCC-C-cCCcCcEEHHHHHHHHHhcc--ccccccc--CcccCCCeEEEECCcHH
Confidence            44555443 69999999999668999999 5 78899999999997654210  0110000  11235678999999999


Q ss_pred             HHHHHHHHHHcCCceEEEEEeecCCcCCCCHHHHHHHHHcCcEEEeCCcceEEEc-cCCcEEEEEEEEeee---cCCCCe
Q psy16200         81 AFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFMSPVQVDV-KDNKIAGMQFNRTEQ---NEKGEW  156 (183)
Q Consensus        81 g~e~A~~l~~~G~~~V~lv~r~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~-~~~~v~~v~~~~~~~---~~~~~~  156 (183)
                      |+|+|..|.++|+ +|++++|++...|+....+++.+.++||+|++++.+.++.. ++++++++++.++++   +++|+.
T Consensus       293 a~d~A~~l~r~Ga-~Vtlv~r~~~~~m~a~~~e~~~a~~eGV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~d~~Gr~  371 (464)
T PRK12831        293 AMDAARTALRLGA-EVHIVYRRSEEELPARVEEVHHAKEEGVIFDLLTNPVEILGDENGWVKGMKCIKMELGEPDASGRR  371 (464)
T ss_pred             HHHHHHHHHHcCC-EEEEEeecCcccCCCCHHHHHHHHHcCCEEEecccceEEEecCCCeEEEEEEEEEEecCcCCCCCc
Confidence            9999999999998 59999998876788888888888899999999999999975 457899898877654   344543


Q ss_pred             e--cCCCceEEEECCEEEEcccccccCC
Q psy16200        157 V--EDEEQRIKLKANYIISAFGSTLLDN  182 (183)
Q Consensus       157 ~--~~~g~~~~i~~D~Vi~a~G~~p~~~  182 (183)
                      .  ..+|++.+++||+||+|+|+.|++.
T Consensus       372 ~~~~~~g~~~~i~~D~Vi~AiG~~p~~~  399 (464)
T PRK12831        372 RPVEIEGSEFVLEVDTVIMSLGTSPNPL  399 (464)
T ss_pred             cceecCCceEEEECCEEEECCCCCCChh
Confidence            2  2367777899999999999999863

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=99.94  E-value=3.5e-25  Score=202.56  Aligned_cols=175  Identities=25%  Similarity=0.375  Sum_probs=137.3

Q ss_pred             CChhhhhhCCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCC-CCcceEEEEcCCh
Q psy16200          1 MPTLKLRKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLP-ILKGTVIVLGAGD   79 (183)
Q Consensus         1 ~~~~~l~~~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~VvViGgG~   79 (183)
                      +|.++|++++||+||||||++.|+.++|| | .+.+||+++.+||...+...  +.+ .+.....+ ..+++|+|||||+
T Consensus       383 it~~~l~~~~yDAV~LAtGA~~pr~l~Ip-G-~dl~GV~~a~dfL~~~~~~~--~~~-~~~~~~~~~~~Gk~VvVIGGG~  457 (944)
T PRK12779        383 ATLEDLKAAGFWKIFVGTGAGLPTFMNVP-G-EHLLGVMSANEFLTRVNLMR--GLD-DDYETPLPEVKGKEVFVIGGGN  457 (944)
T ss_pred             EeHHHhccccCCEEEEeCCCCCCCcCCCC-C-CcCcCcEEHHHHHHHHHhhc--ccc-ccccccccccCCCEEEEECCCH
Confidence            46788888789999999999779999999 5 78999999999998765321  000 00000011 1457799999999


Q ss_pred             hHHHHHHHHHHcCCceEEEEEeecCCcCCCCHHHHHHHHHcCcEEEeCCcceEEEcc--CCcEEEEEEEEeee---cCCC
Q psy16200         80 TAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFMSPVQVDVK--DNKIAGMQFNRTEQ---NEKG  154 (183)
Q Consensus        80 ~g~e~A~~l~~~G~~~V~lv~r~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~--~~~v~~v~~~~~~~---~~~~  154 (183)
                      +|+|+|..+.++|+ +|++++|++...||+...++..+.++||+|+++..+.++.++  +++++++++.++++   |.+|
T Consensus       458 tA~D~A~ta~R~Ga-~Vtlv~rr~~~~mpa~~~e~~~a~eeGV~~~~~~~p~~i~~d~~~~~V~~v~~~~~~l~~~d~~G  536 (944)
T PRK12779        458 TAMDAARTAKRLGG-NVTIVYRRTKSEMPARVEELHHALEEGINLAVLRAPREFIGDDHTHFVTHALLDVNELGEPDKSG  536 (944)
T ss_pred             HHHHHHHHHHHcCC-EEEEEEecCcccccccHHHHHHHHHCCCEEEeCcceEEEEecCCCCEEEEEEEEEEEeccccCcC
Confidence            99999999999998 699999997767898888888888999999999999999764  23688888776554   4455


Q ss_pred             Ceec-CCCceEEEECCEEEEcccccccC
Q psy16200        155 EWVE-DEEQRIKLKANYIISAFGSTLLD  181 (183)
Q Consensus       155 ~~~~-~~g~~~~i~~D~Vi~a~G~~p~~  181 (183)
                      +... .+|++.+++||+||+|+|+.||+
T Consensus       537 r~~~~~~G~e~~i~aD~VI~AiG~~p~~  564 (944)
T PRK12779        537 RRSPKPTGEIERVPVDLVIMALGNTANP  564 (944)
T ss_pred             ceeeecCCceEEEECCEEEEcCCcCCCh
Confidence            5422 36777899999999999999985

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=99.94  E-value=6.2e-25  Score=202.25  Aligned_cols=175  Identities=29%  Similarity=0.422  Sum_probs=138.4

Q ss_pred             Chhhhh-hCCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChh
Q psy16200          2 PTLKLR-KDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDT   80 (183)
Q Consensus         2 ~~~~l~-~~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~   80 (183)
                      +++++. +++||+||||||++.|+.|+|| | .+.++|+++.+||...+.... ..+..++  .....+++|+|||||++
T Consensus       508 ~~~~l~~~~~yDaViIATGa~~pr~l~Ip-G-~~l~gV~~a~~fL~~~~~~~~-~~~~~~~--~~~~~Gk~VvVIGgG~t  582 (1006)
T PRK12775        508 TVPQLMNDKGFDAVFLGVGAGAPTFLGIP-G-EFAGQVYSANEFLTRVNLMGG-DKFPFLD--TPISLGKSVVVIGAGNT  582 (1006)
T ss_pred             CHHHHhhccCCCEEEEecCCCCCCCCCCC-C-cCCCCcEEHHHHHHHHHhcCc-ccccccc--CCccCCCEEEEECCcHH
Confidence            566665 4579999999999778999999 5 788999999999988653100 0000001  11235678999999999


Q ss_pred             HHHHHHHHHHcCCceEEEEEeecCCcCCCCHHHHHHHHHcCcEEEeCCcceEEEc-cCCcEEEEEEEEeee---cCCCCe
Q psy16200         81 AFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFMSPVQVDV-KDNKIAGMQFNRTEQ---NEKGEW  156 (183)
Q Consensus        81 g~e~A~~l~~~G~~~V~lv~r~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~-~~~~v~~v~~~~~~~---~~~~~~  156 (183)
                      |+|+|..+.++|+++|++++|+....|++...++..+.++||+|++++.+.++.. ++++|+++++.++++   |.+|++
T Consensus       583 A~D~A~~a~rlGa~~Vtiv~rr~~~em~a~~~e~~~a~eeGI~~~~~~~p~~i~~~~~G~v~~v~~~~~~l~~~d~~Gr~  662 (1006)
T PRK12775        583 AMDCLRVAKRLGAPTVRCVYRRSEAEAPARIEEIRHAKEEGIDFFFLHSPVEIYVDAEGSVRGMKVEEMELGEPDEKGRR  662 (1006)
T ss_pred             HHHHHHHHHHcCCCEEEEEeecCcccCCCCHHHHHHHHhCCCEEEecCCcEEEEeCCCCeEEEEEEEEEEecccCCCCCc
Confidence            9999999999999889999998877788888888888999999999999999975 467899999887654   344554


Q ss_pred             ec-CCCceEEEECCEEEEcccccccC
Q psy16200        157 VE-DEEQRIKLKANYIISAFGSTLLD  181 (183)
Q Consensus       157 ~~-~~g~~~~i~~D~Vi~a~G~~p~~  181 (183)
                      .+ .+|+..+++||+||+|+|+.||+
T Consensus       663 ~~~~~g~~~~i~~D~Vi~AiG~~p~~  688 (1006)
T PRK12775        663 KPMPTGEFKDLECDTVIYALGTKANP  688 (1006)
T ss_pred             cccCCCceEEEEcCEEEECCCcCCCh
Confidence            32 35666789999999999999985

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=99.93  E-value=2.9e-24  Score=193.70  Aligned_cols=175  Identities=26%  Similarity=0.392  Sum_probs=137.2

Q ss_pred             CChhhhhhCCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChh
Q psy16200          1 MPTLKLRKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDT   80 (183)
Q Consensus         1 ~~~~~l~~~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~   80 (183)
                      ++++++++++||+||||||++.|+.|++| | .+.+||+++.+|+...+...  .++..+.  .....+++|+|||||++
T Consensus       508 v~~~~l~~~~ydavvlAtGa~~~~~l~ip-G-~~~~gV~~~~~~l~~~~~~~--~~~~~~~--~~~~~gk~VvVIGgG~~  581 (752)
T PRK12778        508 ITIEELEEEGFKGIFIASGAGLPNFMNIP-G-ENSNGVMSSNEYLTRVNLMD--AASPDSD--TPIKFGKKVAVVGGGNT  581 (752)
T ss_pred             CCHHHHhhcCCCEEEEeCCCCCCCCCCCC-C-CCCCCcEEHHHHHHHHhhcc--ccccccc--CcccCCCcEEEECCcHH
Confidence            46778877889999999999668999999 5 78899999999998654310  0000000  11234577999999999


Q ss_pred             HHHHHHHHHHcCCceEEEEEeecCCcCCCCHHHHHHHHHcCcEEEeCCcceEEEc-cCCcEEEEEEEEeee---cCCCCe
Q psy16200         81 AFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFMSPVQVDV-KDNKIAGMQFNRTEQ---NEKGEW  156 (183)
Q Consensus        81 g~e~A~~l~~~G~~~V~lv~r~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~-~~~~v~~v~~~~~~~---~~~~~~  156 (183)
                      |+|+|..+.++|+++|++++|++...|+....++..+.++||+|++++.+.++.. ++++++++++.++++   +.+|+.
T Consensus       582 a~d~A~~~~r~Ga~~Vtlv~r~~~~~~~~~~~e~~~~~~~GV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~  661 (752)
T PRK12778        582 AMDSARTAKRLGAERVTIVYRRSEEEMPARLEEVKHAKEEGIEFLTLHNPIEYLADEKGWVKQVVLQKMELGEPDASGRR  661 (752)
T ss_pred             HHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHHHcCCEEEecCcceEEEECCCCEEEEEEEEEEEecCcCCCCCC
Confidence            9999999999998669999998776688888788888999999999999999975 456788888876654   234443


Q ss_pred             --ecCCCceEEEECCEEEEcccccccC
Q psy16200        157 --VEDEEQRIKLKANYIISAFGSTLLD  181 (183)
Q Consensus       157 --~~~~g~~~~i~~D~Vi~a~G~~p~~  181 (183)
                        ...+|++++++||+||+|+|+.||+
T Consensus       662 ~~~~~~g~~~~i~~D~Vi~A~G~~p~~  688 (752)
T PRK12778        662 RPVAIPGSTFTVDVDLVIVSVGVSPNP  688 (752)
T ss_pred             CceecCCCeEEEECCEEEECcCCCCCc
Confidence              2346777889999999999999986

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=99.93  E-value=5.4e-24  Score=181.99  Aligned_cols=174  Identities=28%  Similarity=0.401  Sum_probs=132.2

Q ss_pred             ChhhhhhCCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhH
Q psy16200          2 PTLKLRKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTA   81 (183)
Q Consensus         2 ~~~~l~~~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g   81 (183)
                      +.+++.. .||+||||||++.|+.|++| | .+.++|+++.+++...+...... +..+.  .....+++|+|||||++|
T Consensus       211 ~~~~~~~-~yd~viiAtGa~~p~~~~ip-G-~~~~gv~~~~~~l~~~~~~~~~~-~~~~~--~~~~~gk~VvVIGgG~~a  284 (449)
T TIGR01316       211 TLEELFS-QYDAVFIGTGAGLPKLMNIP-G-EELCGVYSANDFLTRANLMKAYE-FPHAD--TPVYAGKSVVVIGGGNTA  284 (449)
T ss_pred             CHHHHHh-hCCEEEEeCCCCCCCcCCCC-C-CCCCCcEEHHHHHHHHhhccccc-ccccC--CcccCCCeEEEECCCHHH
Confidence            4455544 59999999998568889999 5 68889999999987654310000 00000  012345779999999999


Q ss_pred             HHHHHHHHHcCCceEEEEEeecCCcCCCCHHHHHHHHHcCcEEEeCCcceEEEc-cCCcEEEEEEEEeee---cCCCCe-
Q psy16200         82 FDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFMSPVQVDV-KDNKIAGMQFNRTEQ---NEKGEW-  156 (183)
Q Consensus        82 ~e~A~~l~~~G~~~V~lv~r~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~-~~~~v~~v~~~~~~~---~~~~~~-  156 (183)
                      +|+|..|.++|+ +|++++|+++..|+....+++.+.++||+|++++.+.++.. ++++++++++.++++   +.+|+. 
T Consensus       285 ~d~A~~l~~~G~-~Vtlv~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~  363 (449)
T TIGR01316       285 VDSARTALRLGA-EVHCLYRRTREDMTARVEEIAHAEEEGVKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQEQIDSGERR  363 (449)
T ss_pred             HHHHHHHHHcCC-EEEEEeecCcccCCCCHHHHHHHHhCCCEEEeccCcEEEEEcCCCeEEEEEEEEEEecCcCCCCCee
Confidence            999999999998 59999998876688888888888999999999999999976 356788888876543   334433 


Q ss_pred             -ecCCCceEEEECCEEEEcccccccCC
Q psy16200        157 -VEDEEQRIKLKANYIISAFGSTLLDN  182 (183)
Q Consensus       157 -~~~~g~~~~i~~D~Vi~a~G~~p~~~  182 (183)
                       ...+++.++++||+||+|+|+.||+.
T Consensus       364 ~~~~~~~~~~i~~D~Vi~AiG~~p~~~  390 (449)
T TIGR01316       364 FLPCGDAECKLEADAVIVAIGNGSNPI  390 (449)
T ss_pred             eeecCCceEEEECCEEEECCCCCCCch
Confidence             23466777899999999999999863

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=99.92  E-value=1.2e-23  Score=189.85  Aligned_cols=174  Identities=22%  Similarity=0.301  Sum_probs=133.7

Q ss_pred             CChhhhhhCCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChh
Q psy16200          1 MPTLKLRKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDT   80 (183)
Q Consensus         1 ~~~~~l~~~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~   80 (183)
                      +|.+++++++||+||||||++.|+.++|| | .+.++|+++.+||...+.....    ..........+++|||||||++
T Consensus       488 it~edl~~~gyDAV~IATGA~kpr~L~IP-G-eda~GV~sA~DfL~~l~~~~~~----~~~~~~~~~~Gk~VVVIGGGnT  561 (1028)
T PRK06567        488 ITKEQAFDLGFDHIAFCIGAGQPKVLDIE-N-FEAKGVKTASDFLMTLQSGGAF----LKNSNTNMVIRMPIAVIGGGLT  561 (1028)
T ss_pred             CCHHHHhhcCCCEEEEeCCCCCCCCCCCC-C-ccCCCeEEHHHHHHHHhhcccc----cccccCcccCCCCEEEEcCcHH
Confidence            47888888899999999999779999999 5 7889999999999876431000    0000001224567999999999


Q ss_pred             HHHHHHHHHH---------------------------------------------------cCCceEEEEEeecCCcCCC
Q psy16200         81 AFDCATSALR---------------------------------------------------CGANKVLVVFRKGCTNIRA  109 (183)
Q Consensus        81 g~e~A~~l~~---------------------------------------------------~G~~~V~lv~r~~~~~~~~  109 (183)
                      |+|+|..+.+                                                   .|  .|++++|++...||+
T Consensus       562 AmD~ArtAlr~~~l~ve~~l~~~~~~~~~~~d~eia~~f~~h~r~~g~~~~~~~v~~l~~~~G--~VtIvYRr~~~empA  639 (1028)
T PRK06567        562 SLDAATESLYYYKKQVEEFAKDYIEKDLTEEDKEIAEEFIAHAKLFKEAKNNEELRKVFNKLG--GATVYYRGRLQDSPA  639 (1028)
T ss_pred             HHHHHHHHHhhccchhhHHHHhhhhhhcccccHHHHHHHHHHHHhhcchhccchhhhhhccCC--ceEEEecCChhhCCC
Confidence            9999995543                                                   23  299999999888998


Q ss_pred             C---HHHHHHHHHcCcEEEeCCcceEEEc-cCCcEEEEEEEEeee---cCCCCe------------ecCCCceEEEECCE
Q psy16200        110 V---PEEVQLAWEEKCEFLPFMSPVQVDV-KDNKIAGMQFNRTEQ---NEKGEW------------VEDEEQRIKLKANY  170 (183)
Q Consensus       110 ~---~~~~~~~~~~gv~~~~~~~~~~i~~-~~~~v~~v~~~~~~~---~~~~~~------------~~~~g~~~~i~~D~  170 (183)
                      .   .+|++.+.++||.|+++..+.++.. ++++++++++.++..   +..+.|            .+..+++.+++||+
T Consensus       640 ~~~~~eEv~~A~eEGV~f~~~~~P~~i~~d~~g~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  719 (1028)
T PRK06567        640 YKLNHEELIYALALGVDFKENMQPLRINVDKYGHVESVEFENRNRHCEQSKTAWQSHEFGLTRLPRQCYAFPRNDIKTKT  719 (1028)
T ss_pred             CCCCHHHHHHHHHcCcEEEecCCcEEEEecCCCeEEEEEEEEEecccccccccccccccccCCcCcccCCCccccccCCE
Confidence            6   7889999999999999999999976 458899999987651   111222            12345778999999


Q ss_pred             EEEcccccccCC
Q psy16200        171 IISAFGSTLLDN  182 (183)
Q Consensus       171 Vi~a~G~~p~~~  182 (183)
                      ||+|+|+.||+.
T Consensus       720 vi~A~G~~~~~~  731 (1028)
T PRK06567        720 VIMAIGIENNTQ  731 (1028)
T ss_pred             EEEecccCCccc
Confidence            999999999975

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=99.91  E-value=1.9e-22  Score=172.83  Aligned_cols=167  Identities=34%  Similarity=0.486  Sum_probs=129.1

Q ss_pred             hhhhhhCCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHH
Q psy16200          3 TLKLRKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAF   82 (183)
Q Consensus         3 ~~~l~~~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~   82 (183)
                      .+++. ..||+||||||++.|+.+++| | .+.++|+++.+++.......        .. .....+++|+|||||++|+
T Consensus       219 ~~~~~-~~~d~vvlAtGa~~~~~~~i~-G-~~~~gv~~~~~~l~~~~~~~--------~~-~~~~~g~~VvViGgG~~g~  286 (457)
T PRK11749        219 LDELR-AGYDAVFIGTGAGLPRFLGIP-G-ENLGGVYSAVDFLTRVNQAV--------AD-YDLPVGKRVVVIGGGNTAM  286 (457)
T ss_pred             HHHHH-hhCCEEEEccCCCCCCCCCCC-C-ccCCCcEEHHHHHHHHhhcc--------cc-ccCCCCCeEEEECCCHHHH
Confidence            34444 569999999999667888999 5 67889999999988754310        00 0122467899999999999


Q ss_pred             HHHHHHHHcCCceEEEEEeecCCcCCCCHHHHHHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeee---cCCCCee-c
Q psy16200         83 DCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQ---NEKGEWV-E  158 (183)
Q Consensus        83 e~A~~l~~~G~~~V~lv~r~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~---~~~~~~~-~  158 (183)
                      |+|..|.++|+++|++++|++...|+....++..+.++||+|++++.+.++.++++.++++++.++.+   +.+|++. .
T Consensus       287 e~A~~l~~~G~~~Vtlv~~~~~~~~~~~~~~~~~~~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~  366 (457)
T PRK11749        287 DAARTAKRLGAESVTIVYRRGREEMPASEEEVEHAKEEGVEFEWLAAPVEILGDEGRVTGVEFVRMELGEPDASGRRRVP  366 (457)
T ss_pred             HHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHHHCCCEEEecCCcEEEEecCCceEEEEEEEEEecCcCCCCCcccC
Confidence            99999999998789999998765688888888888999999999999999986555566777765432   3334321 2


Q ss_pred             CCCceEEEECCEEEEcccccccC
Q psy16200        159 DEEQRIKLKANYIISAFGSTLLD  181 (183)
Q Consensus       159 ~~g~~~~i~~D~Vi~a~G~~p~~  181 (183)
                      .+++..+++||+||+|+|++||+
T Consensus       367 ~~g~~~~i~~D~vi~a~G~~p~~  389 (457)
T PRK11749        367 IEGSEFTLPADLVIKAIGQTPNP  389 (457)
T ss_pred             CCCceEEEECCEEEECccCCCCc
Confidence            34667789999999999999985

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=99.91  E-value=1.5e-22  Score=179.91  Aligned_cols=165  Identities=27%  Similarity=0.414  Sum_probs=128.5

Q ss_pred             ChhhhhhCCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhH
Q psy16200          2 PTLKLRKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTA   81 (183)
Q Consensus         2 ~~~~l~~~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g   81 (183)
                      +.+++.. .||+||||||++.++.+++| | .+.++|+++.+++......            .....+++|+|||||++|
T Consensus       271 ~~~~~~~-~~DaVilAtGa~~~~~~~ip-G-~~~~gv~~~~~~l~~~~~~------------~~~~~gk~VvVIGgG~~a  335 (652)
T PRK12814        271 TLEELQK-EFDAVLLAVGAQKASKMGIP-G-EELPGVISGIDFLRNVALG------------TALHPGKKVVVIGGGNTA  335 (652)
T ss_pred             CHHHHHh-hcCEEEEEcCCCCCCCCCCC-C-cCcCCcEeHHHHHHHhhcC------------CcccCCCeEEEECCCHHH
Confidence            3455554 49999999999755678999 5 7889999999998765421            123456789999999999


Q ss_pred             HHHHHHHHHcCCceEEEEEeecCCcCCCCHHHHHHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEee---ecCCCCe--
Q psy16200         82 FDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTE---QNEKGEW--  156 (183)
Q Consensus        82 ~e~A~~l~~~G~~~V~lv~r~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~---~~~~~~~--  156 (183)
                      +|+|..+.++|+++|++++|++...|++...++..+.++||+|++++.+.++.++++.+. ++..+++   .+.+|+.  
T Consensus       336 ~e~A~~l~~~Ga~~Vtlv~r~~~~~mpa~~~ei~~a~~eGV~i~~~~~~~~i~~~~~~~~-v~~~~~~~~~~d~~G~~~~  414 (652)
T PRK12814        336 IDAARTALRLGAESVTILYRRTREEMPANRAEIEEALAEGVSLRELAAPVSIERSEGGLE-LTAIKMQQGEPDESGRRRP  414 (652)
T ss_pred             HHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHHHcCCcEEeccCcEEEEecCCeEE-EEEEEEEecccCCCCCCcc
Confidence            999999999998789999999876789888888888899999999999999986555543 3333322   2334443  


Q ss_pred             ecCCCceEEEECCEEEEcccccccCC
Q psy16200        157 VEDEEQRIKLKANYIISAFGSTLLDN  182 (183)
Q Consensus       157 ~~~~g~~~~i~~D~Vi~a~G~~p~~~  182 (183)
                      ...+|++..+++|+||+|+|+.||++
T Consensus       415 ~~~~g~~~~i~~D~VI~AiG~~p~~~  440 (652)
T PRK12814        415 VPVEGSEFTLQADTVISAIGQQVDPP  440 (652)
T ss_pred             eecCCceEEEECCEEEECCCCcCCcc
Confidence            23467777899999999999999864

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=99.90  E-value=3.6e-22  Score=177.75  Aligned_cols=175  Identities=28%  Similarity=0.427  Sum_probs=133.3

Q ss_pred             ChhhhhhCCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCC-CCCcceEEEEcCChh
Q psy16200          2 PTLKLRKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESL-PILKGTVIVLGAGDT   80 (183)
Q Consensus         2 ~~~~l~~~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~VvViGgG~~   80 (183)
                      +++++.. +||+||+|||+..++.+++| | .+.+||+++.+|+....... .++....+. .. ...+++|+|||||++
T Consensus       405 ~~~~~~~-~~DavilAtGa~~~~~l~i~-g-~~~~Gv~~a~~~l~~~~~~~-~~~~~~~~~-~~~~~~gk~VvVIGgG~~  479 (654)
T PRK12769        405 SLESLLE-DYDAVFVGVGTYRSMKAGLP-N-EDAPGVYDALPFLIANTKQV-MGLEELPEE-PFINTAGLNVVVLGGGDT  479 (654)
T ss_pred             CHHHHHh-cCCEEEEeCCCCCCCCCCCC-C-CCCCCeEEhHHHHHHHHhhh-ccCcccccc-ccccCCCCeEEEECCcHH
Confidence            4455554 59999999999767788999 5 78899999988875432110 000000000 00 123467999999999


Q ss_pred             HHHHHHHHHHcCCceEEEEEeecCCcCCCCHHHHHHHHHcCcEEEeCCcceEEEc-cCCcEEEEEEEEeee---cCCCCe
Q psy16200         81 AFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFMSPVQVDV-KDNKIAGMQFNRTEQ---NEKGEW  156 (183)
Q Consensus        81 g~e~A~~l~~~G~~~V~lv~r~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~-~~~~v~~v~~~~~~~---~~~~~~  156 (183)
                      |+|+|..+.++|+++|++++|++...|++...+++.++++||+|+++..+.++.. ++++++++++.++++   +++|++
T Consensus       480 a~d~A~~a~r~ga~~Vt~i~~~~~~~~~~~~~e~~~~~~~Gv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~  559 (654)
T PRK12769        480 AMDCVRTALRHGASNVTCAYRRDEANMPGSKKEVKNAREEGANFEFNVQPVALELNEQGHVCGIRFLRTRLGEPDAQGRR  559 (654)
T ss_pred             HHHHHHHHHHcCCCeEEEeEecCCCCCCCCHHHHHHHHHcCCeEEeccCcEEEEECCCCeEEEEEEEEEEecCcCCCCCC
Confidence            9999999999998789999998776688888888889999999999999999975 457898898876654   445554


Q ss_pred             --ecCCCceEEEECCEEEEcccccccC
Q psy16200        157 --VEDEEQRIKLKANYIISAFGSTLLD  181 (183)
Q Consensus       157 --~~~~g~~~~i~~D~Vi~a~G~~p~~  181 (183)
                        ...+|+++++++|+||+|+|+.|++
T Consensus       560 ~~~~~~g~~~~i~~D~Vi~AiG~~p~~  586 (654)
T PRK12769        560 RPVPIPGSEFVMPADAVIMAFGFNPHG  586 (654)
T ss_pred             cceeCCCceEEEECCEEEECccCCCCc
Confidence              2356788899999999999999985

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=99.90  E-value=5.7e-22  Score=170.25  Aligned_cols=174  Identities=29%  Similarity=0.427  Sum_probs=130.4

Q ss_pred             hhhhhhCCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCC-CCCcceEEEEcCChhH
Q psy16200          3 TLKLRKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESL-PILKGTVIVLGAGDTA   81 (183)
Q Consensus         3 ~~~l~~~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~VvViGgG~~g   81 (183)
                      .+++.. .||+||+|||+..++.++|| | .+.+||+++.+|+....... .+....+.. .+ ...+++|+|||||++|
T Consensus       220 ~~~~~~-~~D~vilAtGa~~~~~~~i~-g-~~~~gV~~a~~~l~~~~~~~-~~~~~~~~~-~~~~~~gk~VvVIGgG~~a  294 (467)
T TIGR01318       220 LDDLLE-DYDAVFLGVGTYRSMRGGLP-G-EDAPGVLQALPFLIANTRQL-MGLPESPEE-PLIDVEGKRVVVLGGGDTA  294 (467)
T ss_pred             HHHHHh-cCCEEEEEeCCCCCCcCCCC-C-cCCCCcEEHHHHHHHHHHHh-cCCCccccc-cccccCCCEEEEECCcHHH
Confidence            345543 69999999999755678999 5 78899999998876432110 000000000 01 1245679999999999


Q ss_pred             HHHHHHHHHcCCceEEEEEeecCCcCCCCHHHHHHHHHcCcEEEeCCcceEEEc-cCCcEEEEEEEEeee---cCCCCee
Q psy16200         82 FDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFMSPVQVDV-KDNKIAGMQFNRTEQ---NEKGEWV  157 (183)
Q Consensus        82 ~e~A~~l~~~G~~~V~lv~r~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~-~~~~v~~v~~~~~~~---~~~~~~~  157 (183)
                      +|+|..+.++|+++||+++|++...|+....++.++.++||+|++++.+.++.. ++++++++++.++++   +++|+..
T Consensus       295 ~d~A~~a~~~Ga~~Vtvv~r~~~~~~~~~~~e~~~~~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~  374 (467)
T TIGR01318       295 MDCVRTAIRLGAASVTCAYRRDEANMPGSRREVANAREEGVEFLFNVQPVYIECDEDGRVTGVGLVRTALGEPDADGRRR  374 (467)
T ss_pred             HHHHHHHHHcCCCeEEEEEecCcccCCCCHHHHHHHHhcCCEEEecCCcEEEEECCCCeEEEEEEEEEEecccCCCCCcc
Confidence            999999999998789999998876688888888888999999999999999975 356788888765543   3455432


Q ss_pred             --cCCCceEEEECCEEEEcccccccC
Q psy16200        158 --EDEEQRIKLKANYIISAFGSTLLD  181 (183)
Q Consensus       158 --~~~g~~~~i~~D~Vi~a~G~~p~~  181 (183)
                        ..++++++++||.||+|+|++|++
T Consensus       375 ~~~~~g~~~~i~~D~Vi~a~G~~p~~  400 (467)
T TIGR01318       375 PVPVAGSEFVLPADVVIMAFGFQPHA  400 (467)
T ss_pred             ceecCCceEEEECCEEEECCcCCCCc
Confidence              245777899999999999999985

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=99.90  E-value=4.3e-22  Score=176.73  Aligned_cols=176  Identities=24%  Similarity=0.337  Sum_probs=133.9

Q ss_pred             ChhhhhhCCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhH
Q psy16200          2 PTLKLRKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTA   81 (183)
Q Consensus         2 ~~~~l~~~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g   81 (183)
                      +++++.. +||+||+|||+..++.+++| | .+.+|++++.+|+....... .++............+++|+|||||++|
T Consensus       388 ~~~~l~~-~~DaV~latGa~~~~~~~i~-g-~~~~gv~~a~~~l~~~~~~~-~~~~~~~~~~~~~~~gk~vvViGgG~~a  463 (639)
T PRK12809        388 TFSDLTS-EYDAVFIGVGTYGMMRADLP-H-EDAPGVIQALPFLTAHTRQL-MGLPESEEYPLTDVEGKRVVVLGGGDTT  463 (639)
T ss_pred             CHHHHHh-cCCEEEEeCCCCCCCCCCCC-C-CccCCcEeHHHHHHHHHHhh-ccCccccccccccCCCCeEEEECCcHHH
Confidence            4455544 69999999999777788999 5 78899999999886542110 0000000000001245679999999999


Q ss_pred             HHHHHHHHHcCCceEEEEEeecCCcCCCCHHHHHHHHHcCcEEEeCCcceEEEc-cCCcEEEEEEEEeee---cCCCCe-
Q psy16200         82 FDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFMSPVQVDV-KDNKIAGMQFNRTEQ---NEKGEW-  156 (183)
Q Consensus        82 ~e~A~~l~~~G~~~V~lv~r~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~-~~~~v~~v~~~~~~~---~~~~~~-  156 (183)
                      +|+|..+.++|+++|++++|++...|+...+++..+.++||+|++++.+.++.+ ++++|+++++.++++   +++|++ 
T Consensus       464 ~d~a~~~~~~Ga~~Vt~v~rr~~~~~~~~~~e~~~a~~eGv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~  543 (639)
T PRK12809        464 MDCLRTSIRLNAASVTCAYRRDEVSMPGSRKEVVNAREEGVEFQFNVQPQYIACDEDGRLTAVGLIRTAMGEPGPDGRRR  543 (639)
T ss_pred             HHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHHHcCCeEEeccCCEEEEECCCCeEEEEEEEEEEecCcCCCCCcc
Confidence            999999999998889999998876788888888888999999999999999975 357798888766654   445654 


Q ss_pred             -ecCCCceEEEECCEEEEcccccccC
Q psy16200        157 -VEDEEQRIKLKANYIISAFGSTLLD  181 (183)
Q Consensus       157 -~~~~g~~~~i~~D~Vi~a~G~~p~~  181 (183)
                       ...+|++++++||+||+|+|+.|++
T Consensus       544 ~~~~~g~~~~i~aD~Vi~AiG~~p~~  569 (639)
T PRK12809        544 PRPVAGSEFELPADVLIMAFGFQAHA  569 (639)
T ss_pred             ceecCCceEEEECCEEEECcCCCCCc
Confidence             3456788899999999999999975

>PLN02852 ferredoxin-NADP+ reductase

Probab=99.90  E-value=3.7e-22  Score=171.39  Aligned_cols=170  Identities=22%  Similarity=0.303  Sum_probs=126.9

Q ss_pred             CChhhhhhCCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChh
Q psy16200          1 MPTLKLRKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDT   80 (183)
Q Consensus         1 ~~~~~l~~~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~   80 (183)
                      +++++|++ .||+||||||+..++.++|| | .+.+||+++.+|+.+++....  ++..+   .....+++|+|||+|++
T Consensus       106 vtl~~L~~-~yDaVIlAtGa~~~~~l~Ip-G-~d~~gV~~a~~fl~~~ng~~d--~~~~~---~~~~~gk~VvVIGgGnv  177 (491)
T PLN02852        106 VSLSELRD-LYHVVVLAYGAESDRRLGIP-G-EDLPGVLSAREFVWWYNGHPD--CVHLP---PDLKSSDTAVVLGQGNV  177 (491)
T ss_pred             ccHHHHhh-hCCEEEEecCCCCCCCCCCC-C-CCCCCeEEHHHHHHHhhcchh--hhhhh---hcccCCCEEEEECCCHH
Confidence            46788876 59999999999755889999 5 788999999999877653100  00000   01224577999999999


Q ss_pred             HHHHHHHHHHc--------------------CCceEEEEEeecCCcCCCCHHHHHH------------------------
Q psy16200         81 AFDCATSALRC--------------------GANKVLVVFRKGCTNIRAVPEEVQL------------------------  116 (183)
Q Consensus        81 g~e~A~~l~~~--------------------G~~~V~lv~r~~~~~~~~~~~~~~~------------------------  116 (183)
                      |+|+|+.|.+.                    |+++|++++||+..+++....|+..                        
T Consensus       178 AlD~Ar~L~~~~~~l~~tdi~~~~l~~l~~~~~~~V~iv~RRg~~~~~ft~~Elrel~~l~~~~~~~~~~~~~~~~~~~~  257 (491)
T PLN02852        178 ALDCARILLRPTDELASTDIAEHALEALRGSSVRKVYLVGRRGPVQAACTAKELRELLGLKNVRVRIKEADLTLSPEDEE  257 (491)
T ss_pred             HHHHHHHHHhCccccccccccHHHHHHHhhCCCCEEEEEEcCChHhCCCCHHHHHHHhccCCCceeechhhhccccchhh
Confidence            99999999876                    8889999999987666655444322                        


Q ss_pred             -----------------H-HH---------cCcEEEeCCcceEEEc-c--CCcEEEEEEEEeeecC---CCCee-cCCCc
Q psy16200        117 -----------------A-WE---------EKCEFLPFMSPVQVDV-K--DNKIAGMQFNRTEQNE---KGEWV-EDEEQ  162 (183)
Q Consensus       117 -----------------~-~~---------~gv~~~~~~~~~~i~~-~--~~~v~~v~~~~~~~~~---~~~~~-~~~g~  162 (183)
                                       + .+         +++.|++..++.+|.. +  +++|+++++.++++..   +++.. ..+|+
T Consensus       258 ~~~~~r~~~r~~~~l~~~a~~~~~~~~~~~~~v~~~f~~sP~ei~~~~~~~~~v~~l~~~~~~l~~~~~~g~~~~~~tge  337 (491)
T PLN02852        258 ELKASRPKRRVYELLSKAAAAGKCAPSGGQRELHFVFFRNPTRFLDSGDGNGHVAGVKLERTVLEGAAGSGKQVAVGTGE  337 (491)
T ss_pred             hhccchhhHHHHHHHHHHHhhcccccCCCCceEEEEccCCCeEEEccCCCCCcEEEEEEEEeecCCCcccCCcccCCCCC
Confidence                             1 12         4799999999999984 2  2689999999887632   34432 23678


Q ss_pred             eEEEECCEEEEccccc
Q psy16200        163 RIKLKANYIISAFGST  178 (183)
Q Consensus       163 ~~~i~~D~Vi~a~G~~  178 (183)
                      .++++||.||.|+||+
T Consensus       338 ~~~i~~D~Vi~aIG~~  353 (491)
T PLN02852        338 FEDLPCGLVLKSIGYK  353 (491)
T ss_pred             EEEEECCEEEEeecCC
Confidence            8899999999999998

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=99.89  E-value=7.2e-22  Score=179.86  Aligned_cols=166  Identities=27%  Similarity=0.430  Sum_probs=125.6

Q ss_pred             ChhhhhhCCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhH
Q psy16200          2 PTLKLRKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTA   81 (183)
Q Consensus         2 ~~~~l~~~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g   81 (183)
                      +++++++.+||+||||||++.++.+++| | .+ ++++++.+++...+...           .....+++|+|||||++|
T Consensus       615 ~le~L~~~gYDaVILATGA~~~~~l~Ip-G-~~-~gV~saldfL~~~k~~~-----------~~~~~GKrVVVIGGGnVA  680 (1019)
T PRK09853        615 TVEQLKNEGYDYVVVAIGADKNGGLKLE-G-GN-QNVIKALPFLEEYKNKG-----------TALKLGKHVVVVGGGNTA  680 (1019)
T ss_pred             EhhhheeccCCEEEECcCCCCCCCCCCC-C-cc-CCceehHHHHHHHhhhc-----------ccccCCCEEEEECCChHH
Confidence            4567777789999999999767778899 4 44 68999999998753210           123457889999999999


Q ss_pred             HHHHHHHHHc-CCceEEEEEeecCCcCCCCHHHHHHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCee-cC
Q psy16200         82 FDCATSALRC-GANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWV-ED  159 (183)
Q Consensus        82 ~e~A~~l~~~-G~~~V~lv~r~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~-~~  159 (183)
                      +|+|+.+.+. |+++|++++|++...||+..+++..+.++||+|+++..+.++.. +++++...+.-...+.+|+.. ..
T Consensus       681 mD~Ar~a~RlgGakeVTLVyRr~~~~MPA~~eEle~AleeGVe~~~~~~p~~I~~-dG~l~~~~~~lg~~d~~Gr~~~v~  759 (1019)
T PRK09853        681 MDAARAALRVPGVEKVTVVYRRTKQEMPAWREEYEEALEDGVEFKELLNPESFDA-DGTLTCRVMKLGEPDESGRRRPVE  759 (1019)
T ss_pred             HHHHHHHHhcCCCceEEEEEccCcccccccHHHHHHHHHcCCEEEeCCceEEEEc-CCcEEEEEEEeecccCCCceEEee
Confidence            9999999888 45689999998876789988889888899999999999999964 455432111101113345432 23


Q ss_pred             CCceEEEECCEEEEcccccccCC
Q psy16200        160 EEQRIKLKANYIISAFGSTLLDN  182 (183)
Q Consensus       160 ~g~~~~i~~D~Vi~a~G~~p~~~  182 (183)
                      +++..+++||+||+|+|+.||++
T Consensus       760 tg~~~~I~aD~VIvAIG~~Pnte  782 (1019)
T PRK09853        760 TGETVTLEADTVITAIGEQVDTE  782 (1019)
T ss_pred             CCCeEEEEeCEEEECCCCcCChh
Confidence            56678999999999999999864

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=99.89  E-value=1.6e-21  Score=167.65  Aligned_cols=167  Identities=26%  Similarity=0.306  Sum_probs=123.5

Q ss_pred             hhhhhCCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHH
Q psy16200          4 LKLRKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFD   83 (183)
Q Consensus         4 ~~l~~~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e   83 (183)
                      +++. ..||+||+|||+..++.+++| | .+.+||+++.+|+...+.... +. ..+.  .....+++|+|||||++|+|
T Consensus       223 ~~~~-~~~d~vvlAtGa~~~~~l~ip-G-~~~~gV~~~~~~l~~~~~~~~-~~-~~~~--~~~~~gk~VvVIGgG~~g~e  295 (471)
T PRK12810        223 EELL-AEYDAVFLGTGAYKPRDLGIP-G-RDLDGVHFAMDFLIQNTRRVL-GD-ETEP--FISAKGKHVVVIGGGDTGMD  295 (471)
T ss_pred             HHHH-hhCCEEEEecCCCCCCcCCCC-C-ccCCCcEEHHHHHHHHHhhhc-cc-cccc--cccCCCCEEEEECCcHHHHH
Confidence            4443 369999999999668889999 5 788999999998876432100 00 0000  01234578999999999999


Q ss_pred             HHHHHHHcCCceEEEEEeecCCcCCCCHH-------------HHHHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeee
Q psy16200         84 CATSALRCGANKVLVVFRKGCTNIRAVPE-------------EVQLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQ  150 (183)
Q Consensus        84 ~A~~l~~~G~~~V~lv~r~~~~~~~~~~~-------------~~~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~  150 (183)
                      +|..+.++|+++|+++++..   ++....             ++..+.++||++++++.+.++.++++++++|++.++.+
T Consensus       296 ~A~~~~~~ga~~Vt~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~GV~i~~~~~~~~i~~~~g~v~~V~~~~~~~  372 (471)
T PRK12810        296 CVGTAIRQGAKSVTQRDIMP---MPPSRRNKNNPWPYWPMKLEVSNAHEEGVEREFNVQTKEFEGENGKVTGVKVVRTEL  372 (471)
T ss_pred             HHHHHHHcCCCeEEEccccC---CCccccccccCCcccchHHHHHHHHHcCCeEEeccCceEEEccCCEEEEEEEEEEEe
Confidence            99999999987899665432   333332             56677889999999999999986678899898876654


Q ss_pred             cCCCCeecCCCceEEEECCEEEEcccccccC
Q psy16200        151 NEKGEWVEDEEQRIKLKANYIISAFGSTLLD  181 (183)
Q Consensus       151 ~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~  181 (183)
                       .++++...+++.++++||+||+|+|+.|++
T Consensus       373 -~~g~~~~~~g~~~~i~~D~VI~A~G~~p~~  402 (471)
T PRK12810        373 -GEGDFEPVEGSEFVLPADLVLLAMGFTGPE  402 (471)
T ss_pred             -cCCCccccCCceEEEECCEEEECcCcCCCc
Confidence             334333456777899999999999999985

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=99.87  E-value=6.1e-21  Score=174.32  Aligned_cols=165  Identities=26%  Similarity=0.417  Sum_probs=125.2

Q ss_pred             ChhhhhhCCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhH
Q psy16200          2 PTLKLRKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTA   81 (183)
Q Consensus         2 ~~~~l~~~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g   81 (183)
                      +++++.+.+||+||||||++.++++++| | .+ ++++++.+++.......           .....+++|+|||||++|
T Consensus       613 ~ve~l~~~gYDaVIIATGA~~~~~l~I~-G-~~-~~v~~avefL~~~~~~~-----------~~~~~GK~VVVIGGGnvA  678 (1012)
T TIGR03315       613 TVAELKNQGYKYVILAIGAWKHGPLRLE-G-GG-ERVLKSLEFLRAFKEGP-----------TINPLGKHVVVVGGGNTA  678 (1012)
T ss_pred             EhhhhhcccccEEEECCCCCCCCCCCcC-C-CC-cceeeHHHHHHHhhccc-----------cccccCCeEEEECCCHHH
Confidence            4566777789999999999767778888 4 33 58889999998754310           113457889999999999


Q ss_pred             HHHHHHHHHc-CCceEEEEEeecCCcCCCCHHHHHHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeec-C
Q psy16200         82 FDCATSALRC-GANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVE-D  159 (183)
Q Consensus        82 ~e~A~~l~~~-G~~~V~lv~r~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~-~  159 (183)
                      +|+|+.+.+. |+++|++++|++...|++..+++..+.++||+|+++..+.++.  +++++...+...+.+.+|+... .
T Consensus       679 mD~Ar~a~Rl~Ga~kVtLVyRr~~~~Mpa~~eEl~~aleeGVe~~~~~~p~~I~--~g~l~v~~~~l~~~d~sGr~~~v~  756 (1012)
T TIGR03315       679 MDAARAALRVPGVEKVTVVYRRTKRYMPASREELEEALEDGVDFKELLSPESFE--DGTLTCEVMKLGEPDASGRRRPVG  756 (1012)
T ss_pred             HHHHHHHHHhCCCceEEEEEccCccccccCHHHHHHHHHcCCEEEeCCceEEEE--CCeEEEEEEEeecccCCCceeeec
Confidence            9999999887 8778999999886668888888888888999999999999886  3444321111111233454432 3


Q ss_pred             CCceEEEECCEEEEcccccccCC
Q psy16200        160 EEQRIKLKANYIISAFGSTLLDN  182 (183)
Q Consensus       160 ~g~~~~i~~D~Vi~a~G~~p~~~  182 (183)
                      +|+..+++||+||+|+|+.||++
T Consensus       757 ~Gee~~I~aD~VIvAiG~~Pnt~  779 (1012)
T TIGR03315       757 TGETVDLPADTVIAAVGEQVDTD  779 (1012)
T ss_pred             CCCeEEEEeCEEEEecCCcCChH
Confidence            57778899999999999999863

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PRK13984 putative oxidoreductase; Provisional

Probab=99.87  E-value=1.4e-20  Score=166.16  Aligned_cols=170  Identities=24%  Similarity=0.366  Sum_probs=126.9

Q ss_pred             hhhhhhCCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHH
Q psy16200          3 TLKLRKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAF   82 (183)
Q Consensus         3 ~~~l~~~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~   82 (183)
                      .+.+. ..||+||+|||++.|+.+++| | .+..+++++.+++...+...+ +     .. .....+++|+|||||++|+
T Consensus       362 ~~~~~-~~yD~vilAtGa~~~r~l~i~-G-~~~~gv~~a~~~l~~~~~~~~-~-----~~-~~~~~~k~VvVIGGG~~g~  431 (604)
T PRK13984        362 LEELR-EKHDAVFLSTGFTLGRSTRIP-G-TDHPDVIQALPLLREIRDYLR-G-----EG-PKPKIPRSLVVIGGGNVAM  431 (604)
T ss_pred             HHHHH-hcCCEEEEEcCcCCCccCCCC-C-cCCcCeEeHHHHHHHHHhhhc-c-----CC-CcCCCCCcEEEECCchHHH
Confidence            44554 469999999999767889999 5 688899999999876653210 0     00 1123467899999999999


Q ss_pred             HHHHHHHHcC-----CceEEEEEee-cCCcCCCCHHHHHHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeee--cCCC
Q psy16200         83 DCATSALRCG-----ANKVLVVFRK-GCTNIRAVPEEVQLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQ--NEKG  154 (183)
Q Consensus        83 e~A~~l~~~G-----~~~V~lv~r~-~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~--~~~~  154 (183)
                      |+|..|++++     ..+|+++..+ ....++....++..+.++||+|+++..+.++..++++++++++.++..  +++|
T Consensus       432 e~A~~l~r~~~~~~g~~~V~v~~~~r~~~~~~~~~~e~~~~~~~GV~i~~~~~~~~i~~~~g~v~~v~~~~~~~~~~~~G  511 (604)
T PRK13984        432 DIARSMARLQKMEYGEVNVKVTSLERTFEEMPADMEEIEEGLEEGVVIYPGWGPMEVVIENDKVKGVKFKKCVEVFDEEG  511 (604)
T ss_pred             HHHHHHHhccccccCceEEEEeccccCcccCCCCHHHHHHHHHcCCEEEeCCCCEEEEccCCEEEEEEEEEEeeccCCCC
Confidence            9999999885     2468887532 334577777777778889999999999999876677898888765421  3445


Q ss_pred             Cee--cCCCceEEEECCEEEEcccccccCC
Q psy16200        155 EWV--EDEEQRIKLKANYIISAFGSTLLDN  182 (183)
Q Consensus       155 ~~~--~~~g~~~~i~~D~Vi~a~G~~p~~~  182 (183)
                      ++.  ..+++..++++|.||+|+|+.||++
T Consensus       512 ~~~~~~~~g~~~~i~aD~Vi~aiG~~p~~~  541 (604)
T PRK13984        512 RFNPKFDESDQIIVEADMVVEAIGQAPDYS  541 (604)
T ss_pred             CccceecCCceEEEECCEEEEeeCCCCChh
Confidence            432  2456678899999999999999864

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=99.85  E-value=1.4e-20  Score=160.17  Aligned_cols=136  Identities=18%  Similarity=0.218  Sum_probs=107.1

Q ss_pred             CCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHHHH
Q psy16200         10 GYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSAL   89 (183)
Q Consensus        10 ~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~l~   89 (183)
                      .+|.+|||||| +|+.||+| + .+...++++.+.+..                  ..+|++++|||||++|+|+|..++
T Consensus       135 ~a~~iiIATGS-~p~~~~~~-~-~~~~~~~~s~~~l~~------------------~~lP~~lvIiGgG~IGlE~a~~~~  193 (454)
T COG1249         135 TADNIIIATGS-RPRIPPGP-G-IDGARILDSSDALFL------------------LELPKSLVIVGGGYIGLEFASVFA  193 (454)
T ss_pred             EeCEEEEcCCC-CCcCCCCC-C-CCCCeEEechhhccc------------------ccCCCEEEEECCCHHHHHHHHHHH
Confidence            57999999999 59999999 5 455667776665431                  267899999999999999999999


Q ss_pred             HcCCceEEEEEeecCCcCCCCHHHHH-----HHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCceE
Q psy16200         90 RCGANKVLVVFRKGCTNIRAVPEEVQ-----LAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRI  164 (183)
Q Consensus        90 ~~G~~~V~lv~r~~~~~~~~~~~~~~-----~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~  164 (183)
                      ++|+ +|||++|+++. +|..++++.     .+.+.|+.+++++.+.++...++.+. +++.             ++...
T Consensus       194 ~LG~-~VTiie~~~~i-Lp~~D~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~v~-v~~~-------------~g~~~  257 (454)
T COG1249         194 ALGS-KVTVVERGDRI-LPGEDPEISKELTKQLEKGGVKILLNTKVTAVEKKDDGVL-VTLE-------------DGEGG  257 (454)
T ss_pred             HcCC-cEEEEecCCCC-CCcCCHHHHHHHHHHHHhCCeEEEccceEEEEEecCCeEE-EEEe-------------cCCCC
Confidence            9998 69999999875 787776654     34556899999999999976444343 4442             22223


Q ss_pred             EEECCEEEEcccccccCC
Q psy16200        165 KLKANYIISAFGSTLLDN  182 (183)
Q Consensus       165 ~i~~D~Vi~a~G~~p~~~  182 (183)
                      ++++|.|++|+|++||++
T Consensus       258 ~~~ad~vLvAiGR~Pn~~  275 (454)
T COG1249         258 TIEADAVLVAIGRKPNTD  275 (454)
T ss_pred             EEEeeEEEEccCCccCCC
Confidence            789999999999999987

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=99.85  E-value=4.7e-21  Score=163.23  Aligned_cols=174  Identities=30%  Similarity=0.411  Sum_probs=134.4

Q ss_pred             CChhhhhhCCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCC-CcceEEEEcCCh
Q psy16200          1 MPTLKLRKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPI-LKGTVIVLGAGD   79 (183)
Q Consensus         1 ~~~~~l~~~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~VvViGgG~   79 (183)
                      +|.++|+++ ||+|++|||+..|+.+++| | .++++|+++.+||...+... .+.  ..+. ..+. .+++|+|||||+
T Consensus       200 it~~~L~~e-~Dav~l~~G~~~~~~l~i~-g-~d~~gv~~A~dfL~~~~~~~-~~~--~~~~-~~~~~~gk~vvVIGgG~  272 (457)
T COG0493         200 ITLEELLKE-YDAVFLATGAGKPRPLDIP-G-EDAKGVAFALDFLTRLNKEV-LGD--FAED-RTPPAKGKRVVVIGGGD  272 (457)
T ss_pred             CCHHHHHHh-hCEEEEeccccCCCCCCCC-C-cCCCcchHHHHHHHHHHHHH-hcc--cccc-cCCCCCCCeEEEECCCC
Confidence            578999998 8999999999999999999 5 78999999999998877531 110  0000 1122 236799999999


Q ss_pred             hHHHHHHHHHHcCCceEEEEEeecCC-cCC-----CCHHHHHHHHHcCcEEEeCCcceEEEc-cCCcEEEEEEEEeeecC
Q psy16200         80 TAFDCATSALRCGANKVLVVFRKGCT-NIR-----AVPEEVQLAWEEKCEFLPFMSPVQVDV-KDNKIAGMQFNRTEQNE  152 (183)
Q Consensus        80 ~g~e~A~~l~~~G~~~V~lv~r~~~~-~~~-----~~~~~~~~~~~~gv~~~~~~~~~~i~~-~~~~v~~v~~~~~~~~~  152 (183)
                      +++||+....++|+++|+.+++.... .+.     +...++..+.++|+++.+...+.++.. ++++|+++++.++++.+
T Consensus       273 Ta~D~~~t~~r~Ga~~v~~~~~~~~~~~~~~~~~~~~~~~~~~a~eeg~~~~~~~~~~~~~~~e~GrV~~~~~~~~~~~~  352 (457)
T COG0493         273 TAMDCAGTALRLGAKSVTCFYREDRDDETNEWPTWAAQLEVRSAGEEGVERLPFVQPKAFIGNEGGRVTGVKFGRVEPGE  352 (457)
T ss_pred             CHHHHHHHHhhcCCeEEEEeccccccccCCcccccchhhhhhhhhhcCCcccccCCceeEeecCCCcEeeeecccccccC
Confidence            99999999999999999999754332 222     223466778899999999999999987 67889999887765522


Q ss_pred             C----CCe--ecCCCceEEEECCEEEEcccccccC
Q psy16200        153 K----GEW--VEDEEQRIKLKANYIISAFGSTLLD  181 (183)
Q Consensus       153 ~----~~~--~~~~g~~~~i~~D~Vi~a~G~~p~~  181 (183)
                      .    ++.  ....|+++.+++|+|++|+|+.|+.
T Consensus       353 ~~~~~~r~~p~~v~gs~~~~~aD~v~~aig~~~~~  387 (457)
T COG0493         353 YVDGWGRRGPVGVIGTEKTDAADTVILAIGFEGDA  387 (457)
T ss_pred             cccccccccCccccCceEEehHHHHHHHhccCCCc
Confidence            1    122  3567899999999999999998874

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=99.84  E-value=3e-19  Score=156.64  Aligned_cols=159  Identities=28%  Similarity=0.474  Sum_probs=127.9

Q ss_pred             CCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHHH
Q psy16200          9 DGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSA   88 (183)
Q Consensus         9 ~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~l   88 (183)
                      .+||+||+|||+..++.+.++ + .+..|++...+++......            .....+++|+|+|||++|+|++..+
T Consensus       221 ~~~D~Vi~AtG~~~~~~~~i~-g-~~~~gv~~~~~~l~~~~~~------------~~~~~gk~v~ViGgg~~a~d~a~~a  286 (564)
T PRK12771        221 GEFDAVFVAIGAQLGKRLPIP-G-EDAAGVLDAVDFLRAVGEG------------EPPFLGKRVVVIGGGNTAMDAARTA  286 (564)
T ss_pred             hhCCEEEEeeCCCCCCcCCCC-C-CccCCcEEHHHHHHHhhcc------------CCcCCCCCEEEECChHHHHHHHHHH
Confidence            469999999999766778899 5 6778999988888654321            1123467799999999999999999


Q ss_pred             HHcCCceEEEEEeecCCcCCCCHHHHHHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeee---cCCCCeecCCCceEE
Q psy16200         89 LRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQ---NEKGEWVEDEEQRIK  165 (183)
Q Consensus        89 ~~~G~~~V~lv~r~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~---~~~~~~~~~~g~~~~  165 (183)
                      .++|+++|++++|++...++....++..+.++||+|+++..+.++..+++++.++++.+++.   +.+|++.+.+++.++
T Consensus       287 ~~lga~~v~ii~r~~~~~~~~~~~~~~~a~~~GVki~~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~g~~~~  366 (564)
T PRK12771        287 RRLGAEEVTIVYRRTREDMPAHDEEIEEALREGVEINWLRTPVEIEGDENGATGLRVITVEKMELDEDGRPSPVTGEEET  366 (564)
T ss_pred             HHcCCCEEEEEEecCcccCCCCHHHHHHHHHcCCEEEecCCcEEEEcCCCCEEEEEEEEEEecccCCCCCeeecCCceEE
Confidence            99997789999998876788888888888889999999999999986544544777765543   455665555777889


Q ss_pred             EECCEEEEcccccccC
Q psy16200        166 LKANYIISAFGSTLLD  181 (183)
Q Consensus       166 i~~D~Vi~a~G~~p~~  181 (183)
                      +++|+||+|+|+.|++
T Consensus       367 i~~D~Vi~A~G~~p~~  382 (564)
T PRK12771        367 LEADLVVLAIGQDIDS  382 (564)
T ss_pred             EECCEEEECcCCCCch
Confidence            9999999999999975

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=99.83  E-value=3.7e-19  Score=153.56  Aligned_cols=168  Identities=23%  Similarity=0.291  Sum_probs=116.7

Q ss_pred             CCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCC-CCCCCCcceEEEEcCChhHHHHHHH
Q psy16200          9 DGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKK-ESLPILKGTVIVLGAGDTAFDCATS   87 (183)
Q Consensus         9 ~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~VvViGgG~~g~e~A~~   87 (183)
                      ..||+||+|||++.|+.|++| | .+.+||+++.+++..........   ..+. ......+++|+|||||++|+|+|..
T Consensus       227 ~~~d~VilAtGa~~~~~l~i~-G-~~~~gV~~~~~~l~~~~~~~~~~---~~~~~~~~~~~gk~VvViGgG~~g~d~a~~  301 (485)
T TIGR01317       227 EQFDAVVLAGGATKPRDLPIP-G-RELKGIHYAMEFLPSATKALLGK---DFKDIIFIKAKGKKVVVIGGGDTGADCVGT  301 (485)
T ss_pred             hhCCEEEEccCCCCCCcCCCC-C-cCCCCcEeHHHHHHHHhhhhccc---cccccccccCCCCEEEEECCcHHHHHHHHH
Confidence            469999999999668899999 5 78899999998887643210000   0000 0011245679999999999999999


Q ss_pred             HHHcCCceEEEEEeecCCc--------CCCCHH--HHHHHHHc-----Cc-EEEeCCcceEEEcc-CCcEEEEEEEEeee
Q psy16200         88 ALRCGANKVLVVFRKGCTN--------IRAVPE--EVQLAWEE-----KC-EFLPFMSPVQVDVK-DNKIAGMQFNRTEQ  150 (183)
Q Consensus        88 l~~~G~~~V~lv~r~~~~~--------~~~~~~--~~~~~~~~-----gv-~~~~~~~~~~i~~~-~~~v~~v~~~~~~~  150 (183)
                      +.++|+++|+++++.+...        |+....  +++.+.++     |+ .++++..+.++.++ +++++++++.++++
T Consensus       302 a~~~ga~~V~vv~~~~~~~~~~~~~~~~~~~~~~~e~~~a~~e~~~~~gv~~~~~~~~~~~i~~~~~g~v~~v~~~~~~~  381 (485)
T TIGR01317       302 SLRHGAASVHQFEIMPKPPEARAKDNPWPEWPRVYRVDYAHEEAAAHYGRDPREYSILTKEFIGDDEGKVTALRTVRVEW  381 (485)
T ss_pred             HHHcCCCEEEEEEecCCChhhcccccCCCccchhhhhHHHHHhhhhhcCccceEEecCcEEEEEcCCCeEEEEEEEEEEe
Confidence            9999987899999765421        122211  23333333     44 34678889999764 36899898876654


Q ss_pred             --cCCCCe--ecCCCceEEEECCEEEEccccc-ccC
Q psy16200        151 --NEKGEW--VEDEEQRIKLKANYIISAFGST-LLD  181 (183)
Q Consensus       151 --~~~~~~--~~~~g~~~~i~~D~Vi~a~G~~-p~~  181 (183)
                        +++|++  ...+|+..+++||+||+|+|+. ||+
T Consensus       382 ~~~~~Gr~~p~~~~g~~~~i~~D~Vi~AiG~~~p~~  417 (485)
T TIGR01317       382 KKSQDGKWQFVEIPGSEEVFEADLVLLAMGFVGPEQ  417 (485)
T ss_pred             ccCCCCCccceecCCceEEEECCEEEEccCcCCCcc
Confidence              456654  3457778899999999999996 765

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=99.82  E-value=1.7e-18  Score=143.84  Aligned_cols=166  Identities=26%  Similarity=0.379  Sum_probs=114.6

Q ss_pred             CCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCC-CcceEEEEcCChhHHHHHHH
Q psy16200          9 DGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPI-LKGTVIVLGAGDTAFDCATS   87 (183)
Q Consensus         9 ~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~VvViGgG~~g~e~A~~   87 (183)
                      ..||.||||||++.|+.|++| | .+.++++++.+++...... ..++.  +.. ..+. .+++|+|||+|++|+|+|..
T Consensus       117 ~~~d~lviAtGs~~~~~~~ip-g-~~~~~v~~~~~~~~~~~~~-~~~~~--~~~-~~~~~~g~~vvViG~G~~g~e~A~~  190 (352)
T PRK12770        117 KKYDAVLIATGTWKSRKLGIP-G-EDLPGVYSALEYLFRIRAA-KLGYL--PWE-KVPPVEGKKVVVVGAGLTAVDAALE  190 (352)
T ss_pred             hhCCEEEEEeCCCCCCcCCCC-C-ccccCceeHHHHHHHhhhc-ccccc--ccc-cccccCCCEEEEECCCHHHHHHHHH
Confidence            469999999999557788899 5 5778899887766543210 00000  000 0111 24679999999999999999


Q ss_pred             HHHcCCceEEEEEeecCCcCCCCHHHHHHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecC---CC--CeecCCCc
Q psy16200         88 ALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNE---KG--EWVEDEEQ  162 (183)
Q Consensus        88 l~~~G~~~V~lv~r~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~---~~--~~~~~~g~  162 (183)
                      |.+.|+++|++++|++....+.....+.++.++||++++++.+.++..+ +++..+++....+++   .+  ++...+++
T Consensus       191 l~~~g~~~Vtvi~~~~~~~~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  269 (352)
T PRK12770        191 AVLLGAEKVYLAYRRTINEAPAGKYEIERLIARGVEFLELVTPVRIIGE-GRVEGVELAKMRLGEPDESGRPRPVPIPGS  269 (352)
T ss_pred             HHHcCCCeEEEEeecchhhCCCCHHHHHHHHHcCCEEeeccCceeeecC-CcEeEEEEEEEEecCcCcccCcCceecCCC
Confidence            9999985699999876432333345566788899999999999998753 556666665432211   11  11123456


Q ss_pred             eEEEECCEEEEcccccccC
Q psy16200        163 RIKLKANYIISAFGSTLLD  181 (183)
Q Consensus       163 ~~~i~~D~Vi~a~G~~p~~  181 (183)
                      ..+++||+||+++|++|++
T Consensus       270 ~~~i~~D~vi~a~G~~p~~  288 (352)
T PRK12770        270 EFVLEADTVVFAIGEIPTP  288 (352)
T ss_pred             eEEEECCEEEECcccCCCc
Confidence            6789999999999999986

>PRK06370 mercuric reductase; Validated

Probab=99.80  E-value=2.4e-18  Score=147.61  Aligned_cols=138  Identities=22%  Similarity=0.301  Sum_probs=103.6

Q ss_pred             CCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHHH
Q psy16200          9 DGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSA   88 (183)
Q Consensus         9 ~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~l   88 (183)
                      ..||+||||||+ .|+.|++| | .+..+++++.+++..                  ...+++|+|||||++|+|+|..|
T Consensus       132 ~~~d~lViATGs-~p~~p~i~-G-~~~~~~~~~~~~~~~------------------~~~~~~vvVIGgG~~g~E~A~~l  190 (463)
T PRK06370        132 LRAKRIFINTGA-RAAIPPIP-G-LDEVGYLTNETIFSL------------------DELPEHLVIIGGGYIGLEFAQMF  190 (463)
T ss_pred             EEeCEEEEcCCC-CCCCCCCC-C-CCcCceEcchHhhCc------------------cccCCEEEEECCCHHHHHHHHHH
Confidence            469999999999 49999999 5 565677776655421                  23468899999999999999999


Q ss_pred             HHcCCceEEEEEeecCCcCCCCHHHH-----HHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCce
Q psy16200         89 LRCGANKVLVVFRKGCTNIRAVPEEV-----QLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQR  163 (183)
Q Consensus        89 ~~~G~~~V~lv~r~~~~~~~~~~~~~-----~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~  163 (183)
                      +++|. +|+++++.+.. ++..+.++     ..+.+.||++++++.+.++..+++.+. +++.            .++..
T Consensus       191 ~~~G~-~Vtli~~~~~~-l~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~~-v~~~------------~~~~~  255 (463)
T PRK06370        191 RRFGS-EVTVIERGPRL-LPREDEDVAAAVREILEREGIDVRLNAECIRVERDGDGIA-VGLD------------CNGGA  255 (463)
T ss_pred             HHcCC-eEEEEEcCCCC-CcccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEE-EEEE------------eCCCc
Confidence            99997 79999998754 44433322     345678999999999999976433332 3332            12234


Q ss_pred             EEEECCEEEEcccccccCC
Q psy16200        164 IKLKANYIISAFGSTLLDN  182 (183)
Q Consensus       164 ~~i~~D~Vi~a~G~~p~~~  182 (183)
                      .++++|.||+|+|++||++
T Consensus       256 ~~i~~D~Vi~A~G~~pn~~  274 (463)
T PRK06370        256 PEITGSHILVAVGRVPNTD  274 (463)
T ss_pred             eEEEeCEEEECcCCCcCCC
Confidence            5799999999999999986

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=99.79  E-value=1.7e-18  Score=147.62  Aligned_cols=136  Identities=21%  Similarity=0.249  Sum_probs=103.3

Q ss_pred             hCCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHH
Q psy16200          8 KDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATS   87 (183)
Q Consensus         8 ~~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~   87 (183)
                      ...||+||||||+. |+.|++| |+.+.++++++.+++..                  ...+++|+|||||++|+|+|..
T Consensus       116 ~~~~d~vViATGs~-~~~p~i~-G~~~~~~v~~~~~~~~~------------------~~~~~~vvIIGgG~~g~e~A~~  175 (438)
T PRK07251        116 ELTAETIVINTGAV-SNVLPIP-GLADSKHVYDSTGIQSL------------------ETLPERLGIIGGGNIGLEFAGL  175 (438)
T ss_pred             EEEcCEEEEeCCCC-CCCCCCC-CcCCCCcEEchHHHhcc------------------hhcCCeEEEECCCHHHHHHHHH
Confidence            35799999999995 8889999 64456778887765532                  2345789999999999999999


Q ss_pred             HHHcCCceEEEEEeecCCcCCCCHHHH-----HHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCc
Q psy16200         88 ALRCGANKVLVVFRKGCTNIRAVPEEV-----QLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQ  162 (183)
Q Consensus        88 l~~~G~~~V~lv~r~~~~~~~~~~~~~-----~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~  162 (183)
                      |+++|. +|++++|++.. ++..++++     +.+.+.||+++++..+.++..+++.+.   +.            .++ 
T Consensus       176 l~~~g~-~Vtli~~~~~~-l~~~~~~~~~~~~~~l~~~GI~i~~~~~V~~i~~~~~~v~---v~------------~~g-  237 (438)
T PRK07251        176 YNKLGS-KVTVLDAASTI-LPREEPSVAALAKQYMEEDGITFLLNAHTTEVKNDGDQVL---VV------------TED-  237 (438)
T ss_pred             HHHcCC-eEEEEecCCcc-CCCCCHHHHHHHHHHHHHcCCEEEcCCEEEEEEecCCEEE---EE------------ECC-
Confidence            999997 69999998754 44443333     235678999999999999875433332   21            122 


Q ss_pred             eEEEECCEEEEcccccccCC
Q psy16200        163 RIKLKANYIISAFGSTLLDN  182 (183)
Q Consensus       163 ~~~i~~D~Vi~a~G~~p~~~  182 (183)
                       .++++|.||+|+|++||++
T Consensus       238 -~~i~~D~viva~G~~p~~~  256 (438)
T PRK07251        238 -ETYRFDALLYATGRKPNTE  256 (438)
T ss_pred             -eEEEcCEEEEeeCCCCCcc
Confidence             3689999999999999975

>TIGR02053 MerA mercuric reductase

Probab=99.78  E-value=5.7e-18  Score=145.29  Aligned_cols=138  Identities=20%  Similarity=0.280  Sum_probs=102.7

Q ss_pred             CCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHHH
Q psy16200          9 DGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSA   88 (183)
Q Consensus         9 ~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~l   88 (183)
                      ..||++|||||+ .|+.|++| | .+..+++++.+++..                  ...+++|+|||||++|+|+|..|
T Consensus       127 ~~~~~lIiATGs-~p~~p~i~-G-~~~~~~~~~~~~~~~------------------~~~~~~vvIIGgG~~g~E~A~~l  185 (463)
T TIGR02053       127 RGAKRFLIATGA-RPAIPPIP-G-LKEAGYLTSEEALAL------------------DRIPESLAVIGGGAIGVELAQAF  185 (463)
T ss_pred             EEeCEEEEcCCC-CCCCCCCC-C-cccCceECchhhhCc------------------ccCCCeEEEECCCHHHHHHHHHH
Confidence            368999999999 48889999 5 455567766655421                  22357899999999999999999


Q ss_pred             HHcCCceEEEEEeecCCcCCCCHHHH-----HHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCce
Q psy16200         89 LRCGANKVLVVFRKGCTNIRAVPEEV-----QLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQR  163 (183)
Q Consensus        89 ~~~G~~~V~lv~r~~~~~~~~~~~~~-----~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~  163 (183)
                      +++|. +|++++++++. ++..++++     ..+.+.||++++++.+.++..+++.+. +++.            .++..
T Consensus       186 ~~~g~-~Vtli~~~~~~-l~~~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~~~-v~~~------------~~~~~  250 (463)
T TIGR02053       186 ARLGS-EVTILQRSDRL-LPREEPEISAAVEEALAEEGIEVVTSAQVKAVSVRGGGKI-ITVE------------KPGGQ  250 (463)
T ss_pred             HHcCC-cEEEEEcCCcC-CCccCHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCEEE-EEEE------------eCCCc
Confidence            99997 69999998764 55443332     235678999999999999875433322 3332            12334


Q ss_pred             EEEECCEEEEcccccccCC
Q psy16200        164 IKLKANYIISAFGSTLLDN  182 (183)
Q Consensus       164 ~~i~~D~Vi~a~G~~p~~~  182 (183)
                      .++++|.||+|+|++||++
T Consensus       251 ~~i~~D~ViiA~G~~p~~~  269 (463)
T TIGR02053       251 GEVEADELLVATGRRPNTD  269 (463)
T ss_pred             eEEEeCEEEEeECCCcCCC
Confidence            6799999999999999986

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=99.78  E-value=7.2e-18  Score=143.84  Aligned_cols=135  Identities=19%  Similarity=0.277  Sum_probs=102.0

Q ss_pred             CCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHHH
Q psy16200          9 DGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSA   88 (183)
Q Consensus         9 ~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~l   88 (183)
                      ..||++|||||++ |+.|++| |+.+.++++++.+++..                  ...+++|+|||||++|+|+|..|
T Consensus       118 ~~~d~lviATGs~-p~~p~i~-G~~~~~~v~~~~~~~~~------------------~~~~~~v~ViGgG~~g~E~A~~l  177 (441)
T PRK08010        118 IHGEKIFINTGAQ-TVVPPIP-GITTTPGVYDSTGLLNL------------------KELPGHLGILGGGYIGVEFASMF  177 (441)
T ss_pred             EEeCEEEEcCCCc-CCCCCCC-CccCCCCEEChhHhhcc------------------cccCCeEEEECCCHHHHHHHHHH
Confidence            4699999999995 8889999 64456778876655421                  23457899999999999999999


Q ss_pred             HHcCCceEEEEEeecCCcCCCCHHHH-----HHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCce
Q psy16200         89 LRCGANKVLVVFRKGCTNIRAVPEEV-----QLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQR  163 (183)
Q Consensus        89 ~~~G~~~V~lv~r~~~~~~~~~~~~~-----~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~  163 (183)
                      .++|. +|++++|++.. ++..++++     ..+.+.||+++++..+.++..+++.+. ++.             .++  
T Consensus       178 ~~~g~-~Vtli~~~~~~-l~~~~~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~v~-v~~-------------~~g--  239 (441)
T PRK08010        178 ANFGS-KVTILEAASLF-LPREDRDIADNIATILRDQGVDIILNAHVERISHHENQVQ-VHS-------------EHA--  239 (441)
T ss_pred             HHCCC-eEEEEecCCCC-CCCcCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEE-EEE-------------cCC--
Confidence            99996 79999997654 55444332     345678999999999999976444332 211             112  


Q ss_pred             EEEECCEEEEcccccccCC
Q psy16200        164 IKLKANYIISAFGSTLLDN  182 (183)
Q Consensus       164 ~~i~~D~Vi~a~G~~p~~~  182 (183)
                       ++++|.|++|+|++||++
T Consensus       240 -~i~~D~vl~a~G~~pn~~  257 (441)
T PRK08010        240 -QLAVDALLIASGRQPATA  257 (441)
T ss_pred             -eEEeCEEEEeecCCcCCC
Confidence             488999999999999975

>PRK07846 mycothione reductase; Reviewed

Probab=99.77  E-value=9e-18  Score=143.79  Aligned_cols=135  Identities=19%  Similarity=0.281  Sum_probs=101.0

Q ss_pred             CCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHHH
Q psy16200          9 DGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSA   88 (183)
Q Consensus         9 ~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~l   88 (183)
                      ..||++|||||+ .|+.|++| | .+...++++.+++..                  ...+++|+|||||++|+|+|..|
T Consensus       127 ~~~d~lViATGs-~p~~p~i~-g-~~~~~~~~~~~~~~l------------------~~~~~~vvIIGgG~iG~E~A~~l  185 (451)
T PRK07846        127 ITADQVVIAAGS-RPVIPPVI-A-DSGVRYHTSDTIMRL------------------PELPESLVIVGGGFIAAEFAHVF  185 (451)
T ss_pred             EEeCEEEEcCCC-CCCCCCCC-C-cCCccEEchHHHhhh------------------hhcCCeEEEECCCHHHHHHHHHH
Confidence            469999999999 58889999 5 454556666665432                  23457899999999999999999


Q ss_pred             HHcCCceEEEEEeecCCcCCCCHHHHH----HHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCceE
Q psy16200         89 LRCGANKVLVVFRKGCTNIRAVPEEVQ----LAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRI  164 (183)
Q Consensus        89 ~~~G~~~V~lv~r~~~~~~~~~~~~~~----~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~  164 (183)
                      +++|. +|++++|+++. ++..+.++.    .+.+.+++++++..+.++..+++.+. +++             .++  .
T Consensus       186 ~~~G~-~Vtli~~~~~l-l~~~d~~~~~~l~~l~~~~v~i~~~~~v~~i~~~~~~v~-v~~-------------~~g--~  247 (451)
T PRK07846        186 SALGV-RVTVVNRSGRL-LRHLDDDISERFTELASKRWDVRLGRNVVGVSQDGSGVT-LRL-------------DDG--S  247 (451)
T ss_pred             HHcCC-eEEEEEcCCcc-ccccCHHHHHHHHHHHhcCeEEEeCCEEEEEEEcCCEEE-EEE-------------CCC--c
Confidence            99997 79999998764 454444432    33467899999999999875444332 332             123  3


Q ss_pred             EEECCEEEEcccccccCC
Q psy16200        165 KLKANYIISAFGSTLLDN  182 (183)
Q Consensus       165 ~i~~D~Vi~a~G~~p~~~  182 (183)
                      +++||.|++|+|++||++
T Consensus       248 ~i~~D~vl~a~G~~pn~~  265 (451)
T PRK07846        248 TVEADVLLVATGRVPNGD  265 (451)
T ss_pred             EeecCEEEEEECCccCcc
Confidence            699999999999999985

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=99.77  E-value=1.1e-17  Score=143.33  Aligned_cols=135  Identities=21%  Similarity=0.219  Sum_probs=98.5

Q ss_pred             CCCCEEEEccCCCCCccc-CCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHH
Q psy16200          9 DGYTAIFIGIGKPNANVI-PIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATS   87 (183)
Q Consensus         9 ~~~davviATGa~~p~~l-~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~   87 (183)
                      ..||+||||||+. |+.| ++| | .+.  .+++.+++.                  ....+++|+|||||++|+|+|..
T Consensus       128 ~~~d~vIiAtGs~-p~~p~~i~-g-~~~--~~~~~~~~~------------------~~~~~~~vvIIGgG~iG~E~A~~  184 (450)
T TIGR01421       128 YTAPHILIATGGK-PSFPENIP-G-AEL--GTDSDGFFA------------------LEELPKRVVIVGAGYIAVELAGV  184 (450)
T ss_pred             EEeCEEEEecCCC-CCCCCCCC-C-Cce--eEcHHHhhC------------------ccccCCeEEEECCCHHHHHHHHH
Confidence            4699999999995 8877 788 5 332  234444432                  12346789999999999999999


Q ss_pred             HHHcCCceEEEEEeecCCcCCCCHHHH-----HHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCc
Q psy16200         88 ALRCGANKVLVVFRKGCTNIRAVPEEV-----QLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQ  162 (183)
Q Consensus        88 l~~~G~~~V~lv~r~~~~~~~~~~~~~-----~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~  162 (183)
                      |+++|. +|++++|+++. ++..+.++     ..+.++||++++++.+.++..+++....+++             .++ 
T Consensus       185 l~~~g~-~Vtli~~~~~i-l~~~d~~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~~~~~v~~-------------~~g-  248 (450)
T TIGR01421       185 LHGLGS-ETHLVIRHERV-LRSFDSMISETITEEYEKEGINVHKLSKPVKVEKTVEGKLVIHF-------------EDG-  248 (450)
T ss_pred             HHHcCC-cEEEEecCCCC-CcccCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEeCCceEEEEE-------------CCC-
Confidence            999997 69999998764 45544333     3456789999999999999753332112333             122 


Q ss_pred             eEEEECCEEEEcccccccCC
Q psy16200        163 RIKLKANYIISAFGSTLLDN  182 (183)
Q Consensus       163 ~~~i~~D~Vi~a~G~~p~~~  182 (183)
                      +..++||.||+|+|++||++
T Consensus       249 ~~~i~~D~vi~a~G~~pn~~  268 (450)
T TIGR01421       249 KSIDDVDELIWAIGRKPNTK  268 (450)
T ss_pred             cEEEEcCEEEEeeCCCcCcc
Confidence            24799999999999999985

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.77  E-value=1.1e-17  Score=143.93  Aligned_cols=137  Identities=16%  Similarity=0.186  Sum_probs=99.7

Q ss_pred             CCCCEEEEccCCCCCcccC-CCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHH
Q psy16200          9 DGYTAIFIGIGKPNANVIP-IFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATS   87 (183)
Q Consensus         9 ~~~davviATGa~~p~~l~-i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~   87 (183)
                      ..||++|||||+. |+.+| ++ +  +.++++++.+.+..                  ...+++|+|||||++|+|+|..
T Consensus       135 ~~~d~lViATGs~-p~~~p~~~-~--~~~~v~~~~~~~~~------------------~~~~~~vvIiGgG~iG~E~A~~  192 (471)
T PRK06467        135 IEFDNAIIAAGSR-PIQLPFIP-H--DDPRIWDSTDALEL------------------KEVPKRLLVMGGGIIGLEMGTV  192 (471)
T ss_pred             EEcCEEEEeCCCC-CCCCCCCC-C--CCCcEEChHHhhcc------------------ccCCCeEEEECCCHHHHHHHHH
Confidence            4699999999995 76555 44 3  34567776665531                  2345789999999999999999


Q ss_pred             HHHcCCceEEEEEeecCCcCCCCHHHHH-----HHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCc
Q psy16200         88 ALRCGANKVLVVFRKGCTNIRAVPEEVQ-----LAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQ  162 (183)
Q Consensus        88 l~~~G~~~V~lv~r~~~~~~~~~~~~~~-----~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~  162 (183)
                      |.++|. +|+++++.++. ++..+.++.     .+.++ +.++++..+.++..+++.+. +++..           .+++
T Consensus       193 l~~~G~-~Vtlv~~~~~i-l~~~d~~~~~~~~~~l~~~-v~i~~~~~v~~i~~~~~~~~-v~~~~-----------~~~~  257 (471)
T PRK06467        193 YHRLGS-EVDVVEMFDQV-IPAADKDIVKVFTKRIKKQ-FNIMLETKVTAVEAKEDGIY-VTMEG-----------KKAP  257 (471)
T ss_pred             HHHcCC-CEEEEecCCCC-CCcCCHHHHHHHHHHHhhc-eEEEcCCEEEEEEEcCCEEE-EEEEe-----------CCCc
Confidence            999997 69999998764 565544432     33455 99999999988875444443 43321           1233


Q ss_pred             eEEEECCEEEEcccccccCC
Q psy16200        163 RIKLKANYIISAFGSTLLDN  182 (183)
Q Consensus       163 ~~~i~~D~Vi~a~G~~p~~~  182 (183)
                      ..++++|.||+|+|++||++
T Consensus       258 ~~~i~~D~vi~a~G~~pn~~  277 (471)
T PRK06467        258 AEPQRYDAVLVAVGRVPNGK  277 (471)
T ss_pred             ceEEEeCEEEEeecccccCC
Confidence            46799999999999999985

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=99.77  E-value=1.8e-17  Score=142.19  Aligned_cols=136  Identities=15%  Similarity=0.202  Sum_probs=101.4

Q ss_pred             CCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHHH
Q psy16200          9 DGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSA   88 (183)
Q Consensus         9 ~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~l   88 (183)
                      ..||++|||||+. |+.+|++ + .+...++++.+.+.                  ....+++++|||||++|+|+|..|
T Consensus       131 ~~~d~lviATGs~-p~~~p~~-~-~~~~~v~~~~~~~~------------------~~~~~~~vvIIGgG~iG~E~A~~l  189 (458)
T PRK06912        131 VDAEQFIIAAGSE-PTELPFA-P-FDGKWIINSKHAMS------------------LPSIPSSLLIVGGGVIGCEFASIY  189 (458)
T ss_pred             EECCEEEEeCCCC-CCCCCCC-C-CCCCeEEcchHHhC------------------ccccCCcEEEECCCHHHHHHHHHH
Confidence            4699999999995 8878888 4 45556776655442                  133567899999999999999999


Q ss_pred             HHcCCceEEEEEeecCCcCCCCHHHH-----HHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCce
Q psy16200         89 LRCGANKVLVVFRKGCTNIRAVPEEV-----QLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQR  163 (183)
Q Consensus        89 ~~~G~~~V~lv~r~~~~~~~~~~~~~-----~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~  163 (183)
                      .++|. +|++++++++. ++..++++     +.+.+.||++++++.+.++..++..+   .+.            .+++.
T Consensus       190 ~~~g~-~Vtli~~~~~l-l~~~d~e~~~~l~~~L~~~GI~i~~~~~V~~i~~~~~~v---~~~------------~~g~~  252 (458)
T PRK06912        190 SRLGT-KVTIVEMAPQL-LPGEDEDIAHILREKLENDGVKIFTGAALKGLNSYKKQA---LFE------------YEGSI  252 (458)
T ss_pred             HHcCC-eEEEEecCCCc-CccccHHHHHHHHHHHHHCCCEEEECCEEEEEEEcCCEE---EEE------------ECCce
Confidence            99997 69999998754 55544333     24567899999999999886533322   231            13444


Q ss_pred             EEEECCEEEEcccccccCC
Q psy16200        164 IKLKANYIISAFGSTLLDN  182 (183)
Q Consensus       164 ~~i~~D~Vi~a~G~~p~~~  182 (183)
                      .++++|.||+|+|++||++
T Consensus       253 ~~i~~D~vivA~G~~p~~~  271 (458)
T PRK06912        253 QEVNAEFVLVSVGRKPRVQ  271 (458)
T ss_pred             EEEEeCEEEEecCCccCCC
Confidence            5799999999999999975

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.77  E-value=2.4e-17  Score=141.71  Aligned_cols=138  Identities=19%  Similarity=0.214  Sum_probs=98.9

Q ss_pred             CCCCEEEEccCCCCCcccCCCCCCccCC--CceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHH
Q psy16200          9 DGYTAIFIGIGKPNANVIPIFQGLTEEM--GFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCAT   86 (183)
Q Consensus         9 ~~~davviATGa~~p~~l~i~gg~~~~~--~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~   86 (183)
                      ..||++|||||++ |+  ++| | .+..  .++++.+++.                  ....+++|+|||||++|+|+|.
T Consensus       135 ~~~d~lVIATGs~-p~--~ip-g-~~~~~~~~~~~~~~~~------------------~~~~~~~vvIIGgG~ig~E~A~  191 (466)
T PRK06115        135 LEAKDIVIATGSE-PT--PLP-G-VTIDNQRIIDSTGALS------------------LPEVPKHLVVIGAGVIGLELGS  191 (466)
T ss_pred             EEeCEEEEeCCCC-CC--CCC-C-CCCCCCeEECHHHHhC------------------CccCCCeEEEECCCHHHHHHHH
Confidence            4699999999994 64  466 4 3333  3555554432                  1235688999999999999999


Q ss_pred             HHHHcCCceEEEEEeecCCcCCCCHHHH-----HHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCC
Q psy16200         87 SALRCGANKVLVVFRKGCTNIRAVPEEV-----QLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEE  161 (183)
Q Consensus        87 ~l~~~G~~~V~lv~r~~~~~~~~~~~~~-----~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g  161 (183)
                      .+.++|. +|+++++.++. ++..+.++     +.+.+.||++++++.+.++..+++.+. +++...          .++
T Consensus       192 ~l~~~G~-~Vtlie~~~~i-l~~~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~-v~~~~~----------~~g  258 (466)
T PRK06115        192 VWRRLGA-QVTVVEYLDRI-CPGTDTETAKTLQKALTKQGMKFKLGSKVTGATAGADGVS-LTLEPA----------AGG  258 (466)
T ss_pred             HHHHcCC-eEEEEeCCCCC-CCCCCHHHHHHHHHHHHhcCCEEEECcEEEEEEEcCCeEE-EEEEEc----------CCC
Confidence            9999996 79999988754 55443332     345678999999999999975434432 333210          134


Q ss_pred             ceEEEECCEEEEcccccccCC
Q psy16200        162 QRIKLKANYIISAFGSTLLDN  182 (183)
Q Consensus       162 ~~~~i~~D~Vi~a~G~~p~~~  182 (183)
                      +..++++|.||+|+|++||++
T Consensus       259 ~~~~i~~D~vi~a~G~~pn~~  279 (466)
T PRK06115        259 AAETLQADYVLVAIGRRPYTQ  279 (466)
T ss_pred             ceeEEEeCEEEEccCCccccc
Confidence            456799999999999999975

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=99.77  E-value=1.5e-17  Score=142.60  Aligned_cols=136  Identities=18%  Similarity=0.211  Sum_probs=103.2

Q ss_pred             hCCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHH
Q psy16200          8 KDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATS   87 (183)
Q Consensus         8 ~~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~   87 (183)
                      ...||+||||||+ .|+.|+++ + .+.++++++.+++..                  ...+++|+|||||++|+|+|..
T Consensus       135 ~~~~d~lviATGs-~p~~p~~~-~-~~~~~v~~~~~~~~~------------------~~~~~~v~IiGgG~~g~E~A~~  193 (461)
T PRK05249        135 TLTADKIVIATGS-RPYRPPDV-D-FDHPRIYDSDSILSL------------------DHLPRSLIIYGAGVIGCEYASI  193 (461)
T ss_pred             EEEcCEEEEcCCC-CCCCCCCC-C-CCCCeEEcHHHhhch------------------hhcCCeEEEECCCHHHHHHHHH
Confidence            3579999999998 48888887 4 456778877766532                  2346889999999999999999


Q ss_pred             HHHcCCceEEEEEeecCCcCCCCHHHH-----HHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCc
Q psy16200         88 ALRCGANKVLVVFRKGCTNIRAVPEEV-----QLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQ  162 (183)
Q Consensus        88 l~~~G~~~V~lv~r~~~~~~~~~~~~~-----~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~  162 (183)
                      |+++|. +|+++++++.. ++..+.++     ..+.+.||++++++.+.++..+++.+. +++             .+++
T Consensus       194 l~~~g~-~Vtli~~~~~~-l~~~d~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~-v~~-------------~~g~  257 (461)
T PRK05249        194 FAALGV-KVTLINTRDRL-LSFLDDEISDALSYHLRDSGVTIRHNEEVEKVEGGDDGVI-VHL-------------KSGK  257 (461)
T ss_pred             HHHcCC-eEEEEecCCCc-CCcCCHHHHHHHHHHHHHcCCEEEECCEEEEEEEeCCeEE-EEE-------------CCCC
Confidence            999997 79999998764 55544332     345678999999999999875444332 222             1233


Q ss_pred             eEEEECCEEEEcccccccCC
Q psy16200        163 RIKLKANYIISAFGSTLLDN  182 (183)
Q Consensus       163 ~~~i~~D~Vi~a~G~~p~~~  182 (183)
                        +++||.||+|+|++||++
T Consensus       258 --~i~~D~vi~a~G~~p~~~  275 (461)
T PRK05249        258 --KIKADCLLYANGRTGNTD  275 (461)
T ss_pred             --EEEeCEEEEeecCCcccc
Confidence              689999999999999975

>PRK10262 thioredoxin reductase; Provisional

Probab=99.76  E-value=1.3e-17  Score=136.76  Aligned_cols=143  Identities=15%  Similarity=0.136  Sum_probs=100.8

Q ss_pred             hCCCCEEEEccCCCCCcccCCCCCCccC--CCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHH
Q psy16200          8 KDGYTAIFIGIGKPNANVIPIFQGLTEE--MGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCA   85 (183)
Q Consensus         8 ~~~~davviATGa~~p~~l~i~gg~~~~--~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A   85 (183)
                      ...||+||||||++ |+.|++| |...+  .++++. .++..                 ....+++|+|||+|++|+|+|
T Consensus       103 ~~~~d~vilAtG~~-~~~~~i~-g~~~~~~~~v~~~-~~~~~-----------------~~~~g~~vvVvGgG~~g~e~A  162 (321)
T PRK10262        103 EYTCDALIIATGAS-ARYLGLP-SEEAFKGRGVSAC-ATCDG-----------------FFYRNQKVAVIGGGNTAVEEA  162 (321)
T ss_pred             EEEECEEEECCCCC-CCCCCCC-CHHHcCCCcEEEe-ecCCH-----------------HHcCCCEEEEECCCHHHHHHH
Confidence            34699999999995 8888999 53222  233321 11111                 123457799999999999999


Q ss_pred             HHHHHcCCceEEEEEeecCCcCCCCHH----HHHHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCC
Q psy16200         86 TSALRCGANKVLVVFRKGCTNIRAVPE----EVQLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEE  161 (183)
Q Consensus        86 ~~l~~~G~~~V~lv~r~~~~~~~~~~~----~~~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g  161 (183)
                      ..|++.+. +|++++|++.  ++....    ..+.+.+.||++++++.+.++..+++.++++++...         ...+
T Consensus       163 ~~l~~~~~-~Vtlv~~~~~--~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~v~~~~~~~~~v~~~~~---------~~~~  230 (321)
T PRK10262        163 LYLSNIAS-EVHLIHRRDG--FRAEKILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDT---------QNSD  230 (321)
T ss_pred             HHHHhhCC-EEEEEEECCc--cCCCHHHHHHHHhhccCCCeEEEeCCEEEEEEcCCccEEEEEEEEc---------CCCC
Confidence            99999985 7999999764  222221    122345778999999999999865556766766421         0123


Q ss_pred             ceEEEECCEEEEcccccccCC
Q psy16200        162 QRIKLKANYIISAFGSTLLDN  182 (183)
Q Consensus       162 ~~~~i~~D~Vi~a~G~~p~~~  182 (183)
                      +..++++|+||+++|++||++
T Consensus       231 ~~~~i~~D~vv~a~G~~p~~~  251 (321)
T PRK10262        231 NIESLDVAGLFVAIGHSPNTA  251 (321)
T ss_pred             eEEEEECCEEEEEeCCccChh
Confidence            456899999999999999974

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=99.76  E-value=2.5e-17  Score=142.17  Aligned_cols=136  Identities=21%  Similarity=0.309  Sum_probs=98.5

Q ss_pred             CCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHHH
Q psy16200          9 DGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSA   88 (183)
Q Consensus         9 ~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~l   88 (183)
                      ..||++|||||+ .|+.|++| |..+  ..+++.+++..                  ...+++++|||||++|+|+|..|
T Consensus       142 ~~~d~lVIATGs-~p~~p~ip-G~~~--~~~~~~~~~~~------------------~~~~~~vvIIGgG~iG~E~A~~l  199 (484)
T TIGR01438       142 YSAERFLIATGE-RPRYPGIP-GAKE--LCITSDDLFSL------------------PYCPGKTLVVGASYVALECAGFL  199 (484)
T ss_pred             EEeCEEEEecCC-CCCCCCCC-Cccc--eeecHHHhhcc------------------cccCCCEEEECCCHHHHHHHHHH
Confidence            469999999999 58889999 5322  23455544421                  23457899999999999999999


Q ss_pred             HHcCCceEEEEEeecCCcCCCCHHHH-----HHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCce
Q psy16200         89 LRCGANKVLVVFRKGCTNIRAVPEEV-----QLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQR  163 (183)
Q Consensus        89 ~~~G~~~V~lv~r~~~~~~~~~~~~~-----~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~  163 (183)
                      +++|. +|++++|. . .++..+.++     ..+.+.||+++++..+.++...++.+. +++..            .+..
T Consensus       200 ~~~G~-~Vtli~~~-~-~l~~~d~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~-v~~~~------------~~~~  263 (484)
T TIGR01438       200 AGIGL-DVTVMVRS-I-LLRGFDQDCANKVGEHMEEHGVKFKRQFVPIKVEQIEAKVK-VTFTD------------STNG  263 (484)
T ss_pred             HHhCC-cEEEEEec-c-cccccCHHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEE-EEEec------------CCcc
Confidence            99997 69999974 3 355554443     245678999999999888875434332 33321            1113


Q ss_pred             EEEECCEEEEcccccccCC
Q psy16200        164 IKLKANYIISAFGSTLLDN  182 (183)
Q Consensus       164 ~~i~~D~Vi~a~G~~p~~~  182 (183)
                      .++++|.||+|+|++||++
T Consensus       264 ~~i~~D~vl~a~G~~pn~~  282 (484)
T TIGR01438       264 IEEEYDTVLLAIGRDACTR  282 (484)
T ss_pred             eEEEeCEEEEEecCCcCCC
Confidence            4799999999999999985

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=99.75  E-value=2.5e-17  Score=142.15  Aligned_cols=135  Identities=16%  Similarity=0.239  Sum_probs=98.6

Q ss_pred             hCCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHH
Q psy16200          8 KDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATS   87 (183)
Q Consensus         8 ~~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~   87 (183)
                      ...||++|||||+. |+.|++| | .+  .++++.+++.                  ....+++|+|||||++|+|+|..
T Consensus       149 ~~~~d~lIIATGs~-p~~p~i~-G-~~--~~~~~~~~~~------------------~~~~~~~vvIIGgG~iG~E~A~~  205 (486)
T TIGR01423       149 RLQAEHILLATGSW-PQMLGIP-G-IE--HCISSNEAFY------------------LDEPPRRVLTVGGGFISVEFAGI  205 (486)
T ss_pred             EEECCEEEEecCCC-CCCCCCC-C-hh--heechhhhhc------------------cccCCCeEEEECCCHHHHHHHHH
Confidence            45799999999995 8888999 5 33  2455554432                  12345789999999999999988


Q ss_pred             HHHc---CCceEEEEEeecCCcCCCCHHHH-----HHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecC
Q psy16200         88 ALRC---GANKVLVVFRKGCTNIRAVPEEV-----QLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVED  159 (183)
Q Consensus        88 l~~~---G~~~V~lv~r~~~~~~~~~~~~~-----~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~  159 (183)
                      +..+   |. +|+|+++.++. ++..++++     ..+.++||+++++..+.++..+++....+++             .
T Consensus       206 ~~~l~~~G~-~Vtli~~~~~i-l~~~d~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~~~~v~~-------------~  270 (486)
T TIGR01423       206 FNAYKPRGG-KVTLCYRNNMI-LRGFDSTLRKELTKQLRANGINIMTNENPAKVTLNADGSKHVTF-------------E  270 (486)
T ss_pred             HHHhccCCC-eEEEEecCCcc-ccccCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCceEEEEE-------------c
Confidence            7665   86 79999988764 45544433     3457789999999999998753333222333             1


Q ss_pred             CCceEEEECCEEEEcccccccCC
Q psy16200        160 EEQRIKLKANYIISAFGSTLLDN  182 (183)
Q Consensus       160 ~g~~~~i~~D~Vi~a~G~~p~~~  182 (183)
                      +++  ++++|.||+|+|++||++
T Consensus       271 ~g~--~i~~D~vl~a~G~~Pn~~  291 (486)
T TIGR01423       271 SGK--TLDVDVVMMAIGRVPRTQ  291 (486)
T ss_pred             CCC--EEEcCEEEEeeCCCcCcc
Confidence            232  699999999999999975

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>KOG0399|consensus

Probab=99.75  E-value=9.2e-18  Score=150.94  Aligned_cols=172  Identities=21%  Similarity=0.243  Sum_probs=122.1

Q ss_pred             CChhhhhhCCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCC-CcceEEEEcCCh
Q psy16200          1 MPTLKLRKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPI-LKGTVIVLGAGD   79 (183)
Q Consensus         1 ~~~~~l~~~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~VvViGgG~   79 (183)
                      ++++.|.++ +||||+|+||..||.+|+| | .+++||+++++||.......  +.+.. +. .... .+|+|+|||||+
T Consensus      1862 vs~d~l~~~-~daiv~a~gst~prdlpv~-g-rd~kgv~fame~l~~ntk~l--ld~~~-d~-~~~~~~gkkvivigggd 1934 (2142)
T KOG0399|consen 1862 VSLDELKKE-NDAIVLATGSTTPRDLPVP-G-RDLKGVHFAMEFLEKNTKSL--LDSVL-DG-NYISAKGKKVIVIGGGD 1934 (2142)
T ss_pred             ccHHHHhhc-cCeEEEEeCCCCCcCCCCC-C-ccccccHHHHHHHHHhHHhh--hcccc-cc-ceeccCCCeEEEECCCC
Confidence            467888887 9999999999999999999 5 89999999999998764321  00000 11 1222 456799999999


Q ss_pred             hHHHHHHHHHHcCCceEEEEEeecCC--------cCCCCHH----HH--HHH-HHcCcEEEeCCc-ceEEEc-cCCcEEE
Q psy16200         80 TAFDCATSALRCGANKVLVVFRKGCT--------NIRAVPE----EV--QLA-WEEKCEFLPFMS-PVQVDV-KDNKIAG  142 (183)
Q Consensus        80 ~g~e~A~~l~~~G~~~V~lv~r~~~~--------~~~~~~~----~~--~~~-~~~gv~~~~~~~-~~~i~~-~~~~v~~  142 (183)
                      +|.||.-+-.|+|++.|.-++--++.        .+|..+.    ++  .++ ..-|-..++-.. .+++.+ +++.|++
T Consensus      1935 tg~dcigtsvrhg~~sv~n~ellp~pp~~ra~~npwpqwprvfrvdygh~e~~~~~g~dpr~y~vltk~f~~~~~g~v~g 2014 (2142)
T KOG0399|consen 1935 TGTDCIGTSVRHGCKSVGNFELLPQPPPERAPDNPWPQWPRVFRVDYGHAEAKEHYGSDPRTYSVLTKRFIGDDNGNVTG 2014 (2142)
T ss_pred             ccccccccchhhccceecceeecCCCCcccCCCCCCccCceEEEeecchHHHHHHhCCCcceeeeeeeeeeccCCCceee
Confidence            99999999999999888877643221        1111111    01  111 223444443333 345665 5678999


Q ss_pred             EEEEEeee--cCCCCee--cCCCceEEEECCEEEEcccccc
Q psy16200        143 MQFNRTEQ--NEKGEWV--EDEEQRIKLKANYIISAFGSTL  179 (183)
Q Consensus       143 v~~~~~~~--~~~~~~~--~~~g~~~~i~~D~Vi~a~G~~p  179 (183)
                      ++..+++|  +.+|+|.  +.+++++.++||.||+|+||.-
T Consensus      2015 l~~vrvew~k~~~g~w~~~ei~~see~~eadlv~lamgf~g 2055 (2142)
T KOG0399|consen 2015 LETVRVEWEKDDKGRWQMKEINNSEEIIEADLVILAMGFVG 2055 (2142)
T ss_pred             EEEEEEEEEecCCCceEEEEcCCcceeeecceeeeeccccC
Confidence            99999998  6679994  5788899999999999999863

>PLN02507 glutathione reductase

Probab=99.75  E-value=3.5e-17  Score=141.76  Aligned_cols=133  Identities=24%  Similarity=0.219  Sum_probs=98.4

Q ss_pred             CCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHHH
Q psy16200          9 DGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSA   88 (183)
Q Consensus         9 ~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~l   88 (183)
                      +.||++|||||+ .|+.|++| | .+.  .+++.+.+..                  ...+++|+|||||++|+|+|..|
T Consensus       166 ~~~d~LIIATGs-~p~~p~ip-G-~~~--~~~~~~~~~l------------------~~~~k~vvVIGgG~ig~E~A~~l  222 (499)
T PLN02507        166 YTAKHILIATGS-RAQRPNIP-G-KEL--AITSDEALSL------------------EELPKRAVVLGGGYIAVEFASIW  222 (499)
T ss_pred             EEcCEEEEecCC-CCCCCCCC-C-ccc--eechHHhhhh------------------hhcCCeEEEECCcHHHHHHHHHH
Confidence            468999999999 48888899 5 332  3444444321                  23467899999999999999999


Q ss_pred             HHcCCceEEEEEeecCCcCCCCHHHHH-----HHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCce
Q psy16200         89 LRCGANKVLVVFRKGCTNIRAVPEEVQ-----LAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQR  163 (183)
Q Consensus        89 ~~~G~~~V~lv~r~~~~~~~~~~~~~~-----~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~  163 (183)
                      .++|. +|++++|.++. ++..+.++.     .+.+.||++++++.+.++..+++.+. +++             .+|  
T Consensus       223 ~~~G~-~Vtli~~~~~~-l~~~d~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~~~~~~-v~~-------------~~g--  284 (499)
T PLN02507        223 RGMGA-TVDLFFRKELP-LRGFDDEMRAVVARNLEGRGINLHPRTNLTQLTKTEGGIK-VIT-------------DHG--  284 (499)
T ss_pred             HHcCC-eEEEEEecCCc-CcccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCeEE-EEE-------------CCC--
Confidence            99996 79999998654 454444332     45678999999999999975444432 222             123  


Q ss_pred             EEEECCEEEEcccccccCC
Q psy16200        164 IKLKANYIISAFGSTLLDN  182 (183)
Q Consensus       164 ~~i~~D~Vi~a~G~~p~~~  182 (183)
                      .++++|.|++|+|++||++
T Consensus       285 ~~i~~D~vl~a~G~~pn~~  303 (499)
T PLN02507        285 EEFVADVVLFATGRAPNTK  303 (499)
T ss_pred             cEEEcCEEEEeecCCCCCC
Confidence            3699999999999999985

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=99.75  E-value=5.7e-17  Score=139.50  Aligned_cols=139  Identities=15%  Similarity=0.153  Sum_probs=98.6

Q ss_pred             hCCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHH
Q psy16200          8 KDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATS   87 (183)
Q Consensus         8 ~~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~   87 (183)
                      ...||++|||||+. |+.+|.. . .+...++++.+.+.                  ....+++|+|||||++|+|+|..
T Consensus       140 ~~~~d~lViATGs~-p~~~p~~-~-~~~~~~~~~~~~~~------------------~~~~~~~vvIIGgG~~G~E~A~~  198 (472)
T PRK05976        140 MIIPENLLIATGSR-PVELPGL-P-FDGEYVISSDEALS------------------LETLPKSLVIVGGGVIGLEWASM  198 (472)
T ss_pred             EEEcCEEEEeCCCC-CCCCCCC-C-CCCceEEcchHhhC------------------ccccCCEEEEECCCHHHHHHHHH
Confidence            34699999999994 7654433 1 22334555554432                  12345789999999999999999


Q ss_pred             HHHcCCceEEEEEeecCCcCCCCHHHH-----HHHHHcCcEEEeCCcceEEEc-cCCcEEEEEEEEeeecCCCCeecCCC
Q psy16200         88 ALRCGANKVLVVFRKGCTNIRAVPEEV-----QLAWEEKCEFLPFMSPVQVDV-KDNKIAGMQFNRTEQNEKGEWVEDEE  161 (183)
Q Consensus        88 l~~~G~~~V~lv~r~~~~~~~~~~~~~-----~~~~~~gv~~~~~~~~~~i~~-~~~~v~~v~~~~~~~~~~~~~~~~~g  161 (183)
                      |+++|. +|++++|.+.. ++..+.++     ..+.+.||++++++.+.++.. +++++..+..             .+|
T Consensus       199 l~~~g~-~Vtli~~~~~i-l~~~~~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~-------------~~g  263 (472)
T PRK05976        199 LADFGV-EVTVVEAADRI-LPTEDAELSKEVARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAE-------------HNG  263 (472)
T ss_pred             HHHcCC-eEEEEEecCcc-CCcCCHHHHHHHHHHHHhcCCEEEeCcEEEEEEEecCCCEEEEEE-------------eCC
Confidence            999996 69999998754 55544333     345678999999999999864 1344431221             245


Q ss_pred             ceEEEECCEEEEcccccccCC
Q psy16200        162 QRIKLKANYIISAFGSTLLDN  182 (183)
Q Consensus       162 ~~~~i~~D~Vi~a~G~~p~~~  182 (183)
                      +..++++|.||+|+|++||++
T Consensus       264 ~~~~i~~D~vi~a~G~~p~~~  284 (472)
T PRK05976        264 EEKTLEADKVLVSVGRRPNTE  284 (472)
T ss_pred             ceEEEEeCEEEEeeCCccCCC
Confidence            556899999999999999975

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=99.75  E-value=3.7e-17  Score=140.53  Aligned_cols=136  Identities=15%  Similarity=0.190  Sum_probs=100.5

Q ss_pred             hCCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHH
Q psy16200          8 KDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATS   87 (183)
Q Consensus         8 ~~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~   87 (183)
                      ...||+||||||+. |+.||++ + .+...+++..+++..                  ...+++++|||||++|+|+|..
T Consensus       137 ~~~~d~lViATGs~-p~~~p~~-~-~~~~~v~~~~~~~~~------------------~~~~~~vvVIGgG~ig~E~A~~  195 (466)
T PRK07845        137 TLDADVVLIATGAS-PRILPTA-E-PDGERILTWRQLYDL------------------DELPEHLIVVGSGVTGAEFASA  195 (466)
T ss_pred             EEecCEEEEcCCCC-CCCCCCC-C-CCCceEEeehhhhcc------------------cccCCeEEEECCCHHHHHHHHH
Confidence            35799999999994 8777766 3 444567765554421                  2345789999999999999999


Q ss_pred             HHHcCCceEEEEEeecCCcCCCCHHHH-----HHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCc
Q psy16200         88 ALRCGANKVLVVFRKGCTNIRAVPEEV-----QLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQ  162 (183)
Q Consensus        88 l~~~G~~~V~lv~r~~~~~~~~~~~~~-----~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~  162 (183)
                      |++.|. +|++++++++. ++..+.++     ..+.++||+++++..+.++..+++.+. +++             .+| 
T Consensus       196 l~~~g~-~Vtli~~~~~~-l~~~d~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~-v~~-------------~~g-  258 (466)
T PRK07845        196 YTELGV-KVTLVSSRDRV-LPGEDADAAEVLEEVFARRGMTVLKRSRAESVERTGDGVV-VTL-------------TDG-  258 (466)
T ss_pred             HHHcCC-eEEEEEcCCcC-CCCCCHHHHHHHHHHHHHCCcEEEcCCEEEEEEEeCCEEE-EEE-------------CCC-
Confidence            999996 79999987754 55544332     345678999999999999875444443 332             123 


Q ss_pred             eEEEECCEEEEcccccccCC
Q psy16200        163 RIKLKANYIISAFGSTLLDN  182 (183)
Q Consensus       163 ~~~i~~D~Vi~a~G~~p~~~  182 (183)
                       .++++|.||+|+|++||++
T Consensus       259 -~~l~~D~vl~a~G~~pn~~  277 (466)
T PRK07845        259 -RTVEGSHALMAVGSVPNTA  277 (466)
T ss_pred             -cEEEecEEEEeecCCcCCC
Confidence             3689999999999999985

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.75  E-value=5.4e-17  Score=139.43  Aligned_cols=137  Identities=16%  Similarity=0.190  Sum_probs=98.3

Q ss_pred             CCCCEEEEccCCCCCcccCCCCCCcc-CCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHH
Q psy16200          9 DGYTAIFIGIGKPNANVIPIFQGLTE-EMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATS   87 (183)
Q Consensus         9 ~~~davviATGa~~p~~l~i~gg~~~-~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~   87 (183)
                      ..||++|||||+. |+.+  | | .+ ...+++..+.+.                  ....+++|+|||||++|+|+|..
T Consensus       134 ~~~d~lViATGs~-p~~~--p-g-~~~~~~v~~~~~~~~------------------~~~~~~~vvVIGgG~ig~E~A~~  190 (466)
T PRK07818        134 VTFDNAIIATGSS-TRLL--P-G-TSLSENVVTYEEQIL------------------SRELPKSIVIAGAGAIGMEFAYV  190 (466)
T ss_pred             EEcCEEEEeCCCC-CCCC--C-C-CCCCCcEEchHHHhc------------------cccCCCeEEEECCcHHHHHHHHH
Confidence            4699999999995 7653  5 4 33 234555443221                  12245789999999999999999


Q ss_pred             HHHcCCceEEEEEeecCCcCCCCHHHH-----HHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCc
Q psy16200         88 ALRCGANKVLVVFRKGCTNIRAVPEEV-----QLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQ  162 (183)
Q Consensus        88 l~~~G~~~V~lv~r~~~~~~~~~~~~~-----~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~  162 (183)
                      |+++|. +|+++++.++. ++..+.++     +.+.+.||++++++.+.++..+++.+. +++..           .+|+
T Consensus       191 l~~~G~-~Vtlv~~~~~~-l~~~d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~-v~~~~-----------~~g~  256 (466)
T PRK07818        191 LKNYGV-DVTIVEFLDRA-LPNEDAEVSKEIAKQYKKLGVKILTGTKVESIDDNGSKVT-VTVSK-----------KDGK  256 (466)
T ss_pred             HHHcCC-eEEEEecCCCc-CCccCHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCeEE-EEEEe-----------cCCC
Confidence            999997 69999988754 55544333     345678999999999999975434332 33320           1344


Q ss_pred             eEEEECCEEEEcccccccCC
Q psy16200        163 RIKLKANYIISAFGSTLLDN  182 (183)
Q Consensus       163 ~~~i~~D~Vi~a~G~~p~~~  182 (183)
                      ..++++|.||+|+|++||++
T Consensus       257 ~~~i~~D~vi~a~G~~pn~~  276 (466)
T PRK07818        257 AQELEADKVLQAIGFAPRVE  276 (466)
T ss_pred             eEEEEeCEEEECcCcccCCC
Confidence            56899999999999999975

>PTZ00058 glutathione reductase; Provisional

Probab=99.75  E-value=4.9e-17  Score=142.28  Aligned_cols=133  Identities=15%  Similarity=0.196  Sum_probs=99.7

Q ss_pred             CCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHHH
Q psy16200          9 DGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSA   88 (183)
Q Consensus         9 ~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~l   88 (183)
                      ..||+||||||+ .|+.|++| | .+  .++++.+++..                  .. +++|+|||||++|+|+|..|
T Consensus       201 i~ad~lVIATGS-~P~~P~Ip-G-~~--~v~ts~~~~~l------------------~~-pk~VvIIGgG~iGlE~A~~l  256 (561)
T PTZ00058        201 IEGKNILIAVGN-KPIFPDVK-G-KE--FTISSDDFFKI------------------KE-AKRIGIAGSGYIAVELINVV  256 (561)
T ss_pred             EECCEEEEecCC-CCCCCCCC-C-ce--eEEEHHHHhhc------------------cC-CCEEEEECCcHHHHHHHHHH
Confidence            479999999999 48888999 5 33  36666655431                  22 67899999999999999999


Q ss_pred             HHcCCceEEEEEeecCCcCCCCHHHH-----HHHHHcCcEEEeCCcceEEEccCC-cEEEEEEEEeeecCCCCeecCCCc
Q psy16200         89 LRCGANKVLVVFRKGCTNIRAVPEEV-----QLAWEEKCEFLPFMSPVQVDVKDN-KIAGMQFNRTEQNEKGEWVEDEEQ  162 (183)
Q Consensus        89 ~~~G~~~V~lv~r~~~~~~~~~~~~~-----~~~~~~gv~~~~~~~~~~i~~~~~-~v~~v~~~~~~~~~~~~~~~~~g~  162 (183)
                      .++|. +|++++++++. ++..++++     ..+.+.||+++++..+.++..+++ .+. +.+              .+.
T Consensus       257 ~~~G~-~Vtli~~~~~i-l~~~d~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~-v~~--------------~~~  319 (561)
T PTZ00058        257 NRLGA-ESYIFARGNRL-LRKFDETIINELENDMKKNNINIITHANVEEIEKVKEKNLT-IYL--------------SDG  319 (561)
T ss_pred             HHcCC-cEEEEEecccc-cccCCHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcEE-EEE--------------CCC
Confidence            99997 69999998754 55544433     245678999999999999975322 232 211              122


Q ss_pred             eEEEECCEEEEcccccccCC
Q psy16200        163 RIKLKANYIISAFGSTLLDN  182 (183)
Q Consensus       163 ~~~i~~D~Vi~a~G~~p~~~  182 (183)
                      ..++++|.|++|+|++||++
T Consensus       320 ~~~i~aD~VlvA~Gr~Pn~~  339 (561)
T PTZ00058        320 RKYEHFDYVIYCVGRSPNTE  339 (561)
T ss_pred             CEEEECCEEEECcCCCCCcc
Confidence            35799999999999999975

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=99.74  E-value=7.3e-17  Score=138.97  Aligned_cols=139  Identities=13%  Similarity=0.158  Sum_probs=99.6

Q ss_pred             CCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHHH
Q psy16200          9 DGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSA   88 (183)
Q Consensus         9 ~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~l   88 (183)
                      ..||+||||||+. |+.+|.+ + .+...++++.+.+.                  ....+++|+|||||++|+|+|..|
T Consensus       144 ~~~d~lViATGs~-p~~~p~~-~-~~~~~~~~~~~~~~------------------~~~~~~~vvVvGgG~~g~E~A~~l  202 (475)
T PRK06327        144 ITAKHVIIATGSE-PRHLPGV-P-FDNKIILDNTGALN------------------FTEVPKKLAVIGAGVIGLELGSVW  202 (475)
T ss_pred             EEeCEEEEeCCCC-CCCCCCC-C-CCCceEECcHHHhc------------------ccccCCeEEEECCCHHHHHHHHHH
Confidence            4699999999994 7655433 1 23345665544332                  123457899999999999999999


Q ss_pred             HHcCCceEEEEEeecCCcCCCCHHHH-----HHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCce
Q psy16200         89 LRCGANKVLVVFRKGCTNIRAVPEEV-----QLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQR  163 (183)
Q Consensus        89 ~~~G~~~V~lv~r~~~~~~~~~~~~~-----~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~  163 (183)
                      .+.|. +|+++++++.. ++..+.++     ..+.++||++++++.+.++..+++.+. +++..           .+|++
T Consensus       203 ~~~g~-~Vtli~~~~~~-l~~~d~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~-v~~~~-----------~~g~~  268 (475)
T PRK06327        203 RRLGA-EVTILEALPAF-LAAADEQVAKEAAKAFTKQGLDIHLGVKIGEIKTGGKGVS-VAYTD-----------ADGEA  268 (475)
T ss_pred             HHcCC-eEEEEeCCCcc-CCcCCHHHHHHHHHHHHHcCcEEEeCcEEEEEEEcCCEEE-EEEEe-----------CCCce
Confidence            99996 79999998754 44433332     345678999999999999976444443 43321           23455


Q ss_pred             EEEECCEEEEcccccccCC
Q psy16200        164 IKLKANYIISAFGSTLLDN  182 (183)
Q Consensus       164 ~~i~~D~Vi~a~G~~p~~~  182 (183)
                      .++++|.|++|+|++||++
T Consensus       269 ~~i~~D~vl~a~G~~p~~~  287 (475)
T PRK06327        269 QTLEVDKLIVSIGRVPNTD  287 (475)
T ss_pred             eEEEcCEEEEccCCccCCC
Confidence            6899999999999999975

>KOG0404|consensus

Probab=99.74  E-value=9e-18  Score=128.98  Aligned_cols=145  Identities=21%  Similarity=0.315  Sum_probs=110.4

Q ss_pred             CCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcce-EEEEcCChhHHHHHHHH
Q psy16200         10 GYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGT-VIVLGAGDTAFDCATSA   88 (183)
Q Consensus        10 ~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-VvViGgG~~g~e~A~~l   88 (183)
                      ..|+||+|||+. .+++.+| | +. ++-     |+...     ...|+.|++.. +.+.+| .+|||||++|||-|.+|
T Consensus       112 ~~~avI~atGAs-AkRl~~p-g-~g-e~~-----fWqrG-----iSaCAVCDGaa-pifrnk~laVIGGGDsA~EEA~fL  176 (322)
T KOG0404|consen  112 TADAVILATGAS-AKRLHLP-G-EG-EGE-----FWQRG-----ISACAVCDGAA-PIFRNKPLAVIGGGDSAMEEALFL  176 (322)
T ss_pred             eeeeEEEecccc-eeeeecC-C-CC-cch-----HHhcc-----cchhhcccCcc-hhhcCCeeEEEcCcHHHHHHHHHH
Confidence            469999999995 8889999 4 42 121     22211     13588888743 445566 99999999999999999


Q ss_pred             HHcCCceEEEEEeecCCcCCCCHHHHHHH-HHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCceEEEE
Q psy16200         89 LRCGANKVLVVFRKGCTNIRAVPEEVQLA-WEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLK  167 (183)
Q Consensus        89 ~~~G~~~V~lv~r~~~~~~~~~~~~~~~~-~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~  167 (183)
                      .+.+. +|+|++|++.  +.++....+++ ...+|++++++...+..+++..+.+++++++          .+|...+++
T Consensus       177 tkyas-kVyii~Rrd~--fRAs~~Mq~ra~~npnI~v~~nt~~~ea~gd~~~l~~l~ikn~----------~tge~~dl~  243 (322)
T KOG0404|consen  177 TKYAS-KVYIIHRRDH--FRASKIMQQRAEKNPNIEVLYNTVAVEALGDGKLLNGLRIKNV----------KTGEETDLP  243 (322)
T ss_pred             Hhhcc-EEEEEEEhhh--hhHHHHHHHHHhcCCCeEEEechhhhhhccCcccccceEEEec----------ccCcccccc
Confidence            99975 7999999964  55554444444 4567999999999988876566777888764          467788999


Q ss_pred             CCEEEEcccccccCC
Q psy16200        168 ANYIISAFGSTLLDN  182 (183)
Q Consensus       168 ~D~Vi~a~G~~p~~~  182 (183)
                      ++-++.++|..|++.
T Consensus       244 v~GlFf~IGH~Pat~  258 (322)
T KOG0404|consen  244 VSGLFFAIGHSPATK  258 (322)
T ss_pred             cceeEEEecCCchhh
Confidence            999999999999873

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=99.74  E-value=8.7e-17  Score=142.72  Aligned_cols=149  Identities=13%  Similarity=0.084  Sum_probs=102.5

Q ss_pred             CCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHHH
Q psy16200          9 DGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSA   88 (183)
Q Consensus         9 ~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~l   88 (183)
                      ..||+||||||+. |+.|+++ + .+..+|+++.+.+..                  ...+++|+|||||++|+|+|..|
T Consensus       273 i~ad~lIIATGS~-P~~P~~~-~-~~~~~V~ts~d~~~l------------------~~lpk~VvIVGgG~iGvE~A~~l  331 (659)
T PTZ00153        273 FKVKNIIIATGST-PNIPDNI-E-VDQKSVFTSDTAVKL------------------EGLQNYMGIVGMGIIGLEFMDIY  331 (659)
T ss_pred             EECCEEEEcCCCC-CCCCCCC-C-CCCCcEEehHHhhhh------------------hhcCCceEEECCCHHHHHHHHHH
Confidence            4799999999994 8877766 4 455678887766542                  23467899999999999999999


Q ss_pred             HHcCCceEEEEEeecCCcCCCCHHHHH----H-H-HHcCcEEEeCCcceEEEccCC-c-EEEEEEEEeeecC-CCCeecC
Q psy16200         89 LRCGANKVLVVFRKGCTNIRAVPEEVQ----L-A-WEEKCEFLPFMSPVQVDVKDN-K-IAGMQFNRTEQNE-KGEWVED  159 (183)
Q Consensus        89 ~~~G~~~V~lv~r~~~~~~~~~~~~~~----~-~-~~~gv~~~~~~~~~~i~~~~~-~-v~~v~~~~~~~~~-~~~~~~~  159 (183)
                      .++|. +|+++++.++. ++..+.++.    + + .+.||+++++..+.++..+++ . ++ +++.....++ ++.. ..
T Consensus       332 ~~~G~-eVTLIe~~~~l-l~~~d~eis~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~-v~~~~~~~~~~~~~~-~~  407 (659)
T PTZ00153        332 TALGS-EVVSFEYSPQL-LPLLDADVAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVI-IGHSERQTGESDGPK-KN  407 (659)
T ss_pred             HhCCC-eEEEEeccCcc-cccCCHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEE-EEEeccccccccccc-cc
Confidence            99996 79999998764 555444332    2 2 357899999999999975332 1 32 3221100000 0000 00


Q ss_pred             CCceEEEECCEEEEcccccccCC
Q psy16200        160 EEQRIKLKANYIISAFGSTLLDN  182 (183)
Q Consensus       160 ~g~~~~i~~D~Vi~a~G~~p~~~  182 (183)
                      ..+.+++++|.||+|+|++||++
T Consensus       408 ~~~~~~i~aD~VlvAtGr~Pnt~  430 (659)
T PTZ00153        408 MNDIKETYVDSCLVATGRKPNTN  430 (659)
T ss_pred             cccceEEEcCEEEEEECcccCCc
Confidence            01224799999999999999986

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.74  E-value=1e-16  Score=137.43  Aligned_cols=137  Identities=18%  Similarity=0.234  Sum_probs=98.4

Q ss_pred             hCCCCEEEEccCCCCCcccCCCCCCccCC--CceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHH
Q psy16200          8 KDGYTAIFIGIGKPNANVIPIFQGLTEEM--GFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCA   85 (183)
Q Consensus         8 ~~~~davviATGa~~p~~l~i~gg~~~~~--~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A   85 (183)
                      ...||++|||||+. |+.|  | | .+..  .+++..+.+.                  ....+++|+|||||++|+|+|
T Consensus       132 ~~~~d~lViAtGs~-p~~~--p-g-~~~~~~~v~~~~~~~~------------------~~~~~~~vvVvGgG~~g~E~A  188 (462)
T PRK06416        132 TYTAKNIILATGSR-PREL--P-G-IEIDGRVIWTSDEALN------------------LDEVPKSLVVIGGGYIGVEFA  188 (462)
T ss_pred             EEEeCEEEEeCCCC-CCCC--C-C-CCCCCCeEEcchHhhC------------------ccccCCeEEEECCCHHHHHHH
Confidence            34799999999995 7543  4 3 2322  4655554432                  123457899999999999999


Q ss_pred             HHHHHcCCceEEEEEeecCCcCCCCHHHH-----HHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCC
Q psy16200         86 TSALRCGANKVLVVFRKGCTNIRAVPEEV-----QLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDE  160 (183)
Q Consensus        86 ~~l~~~G~~~V~lv~r~~~~~~~~~~~~~-----~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~  160 (183)
                      ..|.++|. +|++++|++.. ++..+.++     ..+.+.||++++++.+.++..+++.+. +++.            ..
T Consensus       189 ~~l~~~g~-~Vtli~~~~~~-l~~~~~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~-v~~~------------~g  253 (462)
T PRK06416        189 SAYASLGA-EVTIVEALPRI-LPGEDKEISKLAERALKKRGIKIKTGAKAKKVEQTDDGVT-VTLE------------DG  253 (462)
T ss_pred             HHHHHcCC-eEEEEEcCCCc-CCcCCHHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEE-EEEE------------eC
Confidence            99999997 69999998764 55543332     235678999999999999976444443 3331            12


Q ss_pred             CceEEEECCEEEEcccccccCC
Q psy16200        161 EQRIKLKANYIISAFGSTLLDN  182 (183)
Q Consensus       161 g~~~~i~~D~Vi~a~G~~p~~~  182 (183)
                      ++..++++|.||+|+|++||++
T Consensus       254 g~~~~i~~D~vi~a~G~~p~~~  275 (462)
T PRK06416        254 GKEETLEADYVLVAVGRRPNTE  275 (462)
T ss_pred             CeeEEEEeCEEEEeeCCccCCC
Confidence            3446799999999999999975

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=99.73  E-value=7.7e-17  Score=131.32  Aligned_cols=136  Identities=23%  Similarity=0.270  Sum_probs=105.6

Q ss_pred             CCCEEEEccCCCCCcccCCCCCCccCC--CceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHH
Q psy16200         10 GYTAIFIGIGKPNANVIPIFQGLTEEM--GFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATS   87 (183)
Q Consensus        10 ~~davviATGa~~p~~l~i~gg~~~~~--~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~   87 (183)
                      ..++||||||+. ++.|.+| +..++.  +|+                ||..|++   ...+++|+|||||++|+|.|.+
T Consensus       103 ~ak~vIiAtG~~-~~~~~~~-~e~e~~g~gv~----------------yc~~cdg---~~~~k~v~ViGgG~sAve~Al~  161 (305)
T COG0492         103 EAKAVIIATGAG-ARKLGVP-GEEEFEGKGVS----------------YCATCDG---FFKGKDVVVIGGGDSAVEEALY  161 (305)
T ss_pred             EEeEEEECcCCc-ccCCCCC-cchhhcCCceE----------------EeeecCc---cccCCeEEEEcCCHHHHHHHHH
Confidence            468999999994 8888888 422222  232                5666774   3345679999999999999999


Q ss_pred             HHHcCCceEEEEEeecCCcCCCCHHHHHHHHHc-CcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCceEEE
Q psy16200         88 ALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEE-KCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKL  166 (183)
Q Consensus        88 l~~~G~~~V~lv~r~~~~~~~~~~~~~~~~~~~-gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i  166 (183)
                      |.+.+. +|++++|++.  +.+.+..++++.+. ++++++++.+.++.+++  +.++++++.           .++...+
T Consensus       162 L~~~a~-~Vtlv~r~~~--~ra~~~~~~~l~~~~~i~~~~~~~i~ei~G~~--v~~v~l~~~-----------~~~~~~~  225 (305)
T COG0492         162 LSKIAK-KVTLVHRRDE--FRAEEILVERLKKNVKIEVLTNTVVKEILGDD--VEGVVLKNV-----------KGEEKEL  225 (305)
T ss_pred             HHHhcC-eEEEEecCcc--cCcCHHHHHHHHhcCCeEEEeCCceeEEecCc--cceEEEEec-----------CCceEEE
Confidence            999974 7999999964  55566666667665 89999999999998744  777777642           1667799


Q ss_pred             ECCEEEEcccccccCC
Q psy16200        167 KANYIISAFGSTLLDN  182 (183)
Q Consensus       167 ~~D~Vi~a~G~~p~~~  182 (183)
                      ++|.|++++|..|+++
T Consensus       226 ~~~gvf~~iG~~p~~~  241 (305)
T COG0492         226 PVDGVFIAIGHLPNTE  241 (305)
T ss_pred             EeceEEEecCCCCchH
Confidence            9999999999999864

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=99.73  E-value=9.5e-17  Score=148.55  Aligned_cols=143  Identities=15%  Similarity=0.139  Sum_probs=108.8

Q ss_pred             hCCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHH
Q psy16200          8 KDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATS   87 (183)
Q Consensus         8 ~~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~   87 (183)
                      ...||+||||||+. +++|++| | .+.++|+++.......+.+             ....+++|+|||+|++|+++|..
T Consensus       272 ~i~a~~VILATGa~-~r~~pip-G-~~~pgV~~~~~~~~~l~~~-------------~~~~gk~VvViG~G~~g~e~A~~  335 (985)
T TIGR01372       272 RIRAKRVVLATGAH-ERPLVFA-N-NDRPGVMLAGAARTYLNRY-------------GVAPGKRIVVATNNDSAYRAAAD  335 (985)
T ss_pred             EEEcCEEEEcCCCC-CcCCCCC-C-CCCCCcEEchHHHHHHHhh-------------CcCCCCeEEEECCCHHHHHHHHH
Confidence            45799999999994 8999999 5 7889999876554332210             12245779999999999999999


Q ss_pred             HHHcCCceEEEEEeecCCcCCCCHHHHHHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCceEEEE
Q psy16200         88 ALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLK  167 (183)
Q Consensus        88 l~~~G~~~V~lv~r~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~  167 (183)
                      |++.|.+.|+++++++..    .......+.+.||++++++.+.++.+ ++.+.++++..           .+++.++++
T Consensus       336 L~~~G~~vV~vv~~~~~~----~~~l~~~L~~~GV~i~~~~~v~~i~g-~~~v~~V~l~~-----------~~g~~~~i~  399 (985)
T TIGR01372       336 LLAAGIAVVAIIDARADV----SPEARAEARELGIEVLTGHVVAATEG-GKRVSGVAVAR-----------NGGAGQRLE  399 (985)
T ss_pred             HHHcCCceEEEEccCcch----hHHHHHHHHHcCCEEEcCCeEEEEec-CCcEEEEEEEe-----------cCCceEEEE
Confidence            999997678998765321    22344567788999999999999975 45676676642           134556899


Q ss_pred             CCEEEEcccccccCC
Q psy16200        168 ANYIISAFGSTLLDN  182 (183)
Q Consensus       168 ~D~Vi~a~G~~p~~~  182 (183)
                      ||.|+++.|++||++
T Consensus       400 ~D~V~va~G~~Pnt~  414 (985)
T TIGR01372       400 ADALAVSGGWTPVVH  414 (985)
T ss_pred             CCEEEEcCCcCchhH
Confidence            999999999999863

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=99.73  E-value=1.4e-16  Score=136.44  Aligned_cols=137  Identities=17%  Similarity=0.179  Sum_probs=100.5

Q ss_pred             CCCCEEEEccCCCCCcccCCC-CCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHH
Q psy16200          9 DGYTAIFIGIGKPNANVIPIF-QGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATS   87 (183)
Q Consensus         9 ~~~davviATGa~~p~~l~i~-gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~   87 (183)
                      ..||++|||||+ .|+.+++| +  .+...++++.+.+.                  ....+++|+|||||++|+|+|..
T Consensus       130 ~~~d~lVlAtG~-~p~~~~~~~~--~~~~~~~~~~~~~~------------------~~~~~~~vvViGgG~~g~e~A~~  188 (461)
T TIGR01350       130 LTAKNIIIATGS-RPRSLPGPFD--FDGEVVITSTGALN------------------LKEVPESLVIIGGGVIGIEFASI  188 (461)
T ss_pred             EEeCEEEEcCCC-CCCCCCCCCC--CCCceEEcchHHhc------------------cccCCCeEEEECCCHHHHHHHHH
Confidence            469999999998 48877775 2  23334666555432                  12345789999999999999999


Q ss_pred             HHHcCCceEEEEEeecCCcCCCCHHHH-----HHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCc
Q psy16200         88 ALRCGANKVLVVFRKGCTNIRAVPEEV-----QLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQ  162 (183)
Q Consensus        88 l~~~G~~~V~lv~r~~~~~~~~~~~~~-----~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~  162 (183)
                      |.++|. +|+++++.+.. ++..+.++     +.+.+.||++++++.+.++..+++.+. ++.             .+|+
T Consensus       189 l~~~g~-~Vtli~~~~~~-l~~~~~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~-v~~-------------~~g~  252 (461)
T TIGR01350       189 FASLGS-KVTVIEMLDRI-LPGEDAEVSKVVAKALKKKGVKILTNTKVTAVEKNDDQVV-YEN-------------KGGE  252 (461)
T ss_pred             HHHcCC-cEEEEEcCCCC-CCCCCHHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEE-EEE-------------eCCc
Confidence            999997 69999998754 55543332     345678999999999999876445443 322             1333


Q ss_pred             eEEEECCEEEEcccccccCC
Q psy16200        163 RIKLKANYIISAFGSTLLDN  182 (183)
Q Consensus       163 ~~~i~~D~Vi~a~G~~p~~~  182 (183)
                      ..++++|.||+|+|+.||++
T Consensus       253 ~~~i~~D~vi~a~G~~p~~~  272 (461)
T TIGR01350       253 TETLTGEKVLVAVGRKPNTE  272 (461)
T ss_pred             EEEEEeCEEEEecCCcccCC
Confidence            45799999999999999976

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=99.72  E-value=1.6e-16  Score=133.88  Aligned_cols=137  Identities=19%  Similarity=0.240  Sum_probs=97.3

Q ss_pred             CCCCEEEEccCCCCCcccCCCCCCccCCCceeh---hhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHH
Q psy16200          9 DGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTS---KTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCA   85 (183)
Q Consensus         9 ~~~davviATGa~~p~~l~i~gg~~~~~~V~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A   85 (183)
                      ..||++|||||+. |+.++++ + ...+++++.   .++.....               ....+++|+|||||++|+|+|
T Consensus        99 ~~yd~LViATGs~-~~~~p~~-~-~~~~~v~~~~~~~da~~l~~---------------~~~~~~~vvViGgG~ig~E~A  160 (396)
T PRK09754         99 WHWDQLFIATGAA-ARPLPLL-D-ALGERCFTLRHAGDAARLRE---------------VLQPERSVVIVGAGTIGLELA  160 (396)
T ss_pred             EEcCEEEEccCCC-CCCCCCC-C-cCCCCEEecCCHHHHHHHHH---------------HhhcCCeEEEECCCHHHHHHH
Confidence            4699999999995 8888887 3 455677763   23322111               112356799999999999999


Q ss_pred             HHHHHcCCceEEEEEeecCCcCCC-CHHH-----HHHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecC
Q psy16200         86 TSALRCGANKVLVVFRKGCTNIRA-VPEE-----VQLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVED  159 (183)
Q Consensus        86 ~~l~~~G~~~V~lv~r~~~~~~~~-~~~~-----~~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~  159 (183)
                      ..|.++|. +|+++++.+.. ++. .+++     ...+.+.||+++++..+.++.. ++.+. +++             .
T Consensus       161 ~~l~~~g~-~Vtlv~~~~~~-l~~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~-~~~~~-v~l-------------~  223 (396)
T PRK09754        161 ASATQRRC-KVTVIELAATV-MGRNAPPPVQRYLLQRHQQAGVRILLNNAIEHVVD-GEKVE-LTL-------------Q  223 (396)
T ss_pred             HHHHHcCC-eEEEEecCCcc-hhhhcCHHHHHHHHHHHHHCCCEEEeCCeeEEEEc-CCEEE-EEE-------------C
Confidence            99999997 79999987654 332 2222     2345678999999999998874 33332 332             2


Q ss_pred             CCceEEEECCEEEEcccccccCC
Q psy16200        160 EEQRIKLKANYIISAFGSTLLDN  182 (183)
Q Consensus       160 ~g~~~~i~~D~Vi~a~G~~p~~~  182 (183)
                      +|+  +++||.||+|+|++||++
T Consensus       224 ~g~--~i~aD~Vv~a~G~~pn~~  244 (396)
T PRK09754        224 SGE--TLQADVVIYGIGISANDQ  244 (396)
T ss_pred             CCC--EEECCEEEECCCCChhhH
Confidence            333  689999999999999863

>TIGR03452 mycothione_red mycothione reductase

Probab=99.72  E-value=1.3e-16  Score=136.61  Aligned_cols=135  Identities=17%  Similarity=0.250  Sum_probs=97.0

Q ss_pred             CCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHHH
Q psy16200          9 DGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSA   88 (183)
Q Consensus         9 ~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~l   88 (183)
                      ..||++|||||+. |+.|+++ + .+...++++.+++..                  ...+++++|||||++|+|+|..|
T Consensus       130 ~~~d~lIiATGs~-p~~p~~~-~-~~~~~~~~~~~~~~l------------------~~~~k~vvVIGgG~ig~E~A~~l  188 (452)
T TIGR03452       130 ITGDQIVIAAGSR-PYIPPAI-A-DSGVRYHTNEDIMRL------------------PELPESLVIVGGGYIAAEFAHVF  188 (452)
T ss_pred             EEeCEEEEEECCC-CCCCCCC-C-CCCCEEEcHHHHHhh------------------hhcCCcEEEECCCHHHHHHHHHH
Confidence            4699999999995 8777654 2 222235555555432                  23467899999999999999999


Q ss_pred             HHcCCceEEEEEeecCCcCCCCHHHHH----HHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCceE
Q psy16200         89 LRCGANKVLVVFRKGCTNIRAVPEEVQ----LAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRI  164 (183)
Q Consensus        89 ~~~G~~~V~lv~r~~~~~~~~~~~~~~----~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~  164 (183)
                      .++|. +|+++++.+.. ++..++++.    .+.+.+|+++++..+.++..+++.+. +++             .+|  .
T Consensus       189 ~~~G~-~Vtli~~~~~l-l~~~d~~~~~~l~~~~~~gI~i~~~~~V~~i~~~~~~v~-v~~-------------~~g--~  250 (452)
T TIGR03452       189 SALGT-RVTIVNRSTKL-LRHLDEDISDRFTEIAKKKWDIRLGRNVTAVEQDGDGVT-LTL-------------DDG--S  250 (452)
T ss_pred             HhCCC-cEEEEEccCcc-ccccCHHHHHHHHHHHhcCCEEEeCCEEEEEEEcCCeEE-EEE-------------cCC--C
Confidence            99997 69999997653 444443332    33457899999999999875444432 322             123  2


Q ss_pred             EEECCEEEEcccccccCC
Q psy16200        165 KLKANYIISAFGSTLLDN  182 (183)
Q Consensus       165 ~i~~D~Vi~a~G~~p~~~  182 (183)
                      ++++|.|++|+|++||++
T Consensus       251 ~i~~D~vl~a~G~~pn~~  268 (452)
T TIGR03452       251 TVTADVLLVATGRVPNGD  268 (452)
T ss_pred             EEEcCEEEEeeccCcCCC
Confidence            699999999999999975

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PRK06116 glutathione reductase; Validated

Probab=99.72  E-value=1.9e-16  Score=135.47  Aligned_cols=133  Identities=20%  Similarity=0.247  Sum_probs=98.6

Q ss_pred             CCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHHH
Q psy16200          9 DGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSA   88 (183)
Q Consensus         9 ~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~l   88 (183)
                      ..||++|||||+. |+.|++| | .+  .++++.+++.                  ....+++|+|||||++|+|+|..|
T Consensus       130 ~~~d~lViATGs~-p~~p~i~-g-~~--~~~~~~~~~~------------------~~~~~~~vvViGgG~~g~E~A~~l  186 (450)
T PRK06116        130 YTADHILIATGGR-PSIPDIP-G-AE--YGITSDGFFA------------------LEELPKRVAVVGAGYIAVEFAGVL  186 (450)
T ss_pred             EEeCEEEEecCCC-CCCCCCC-C-cc--eeEchhHhhC------------------ccccCCeEEEECCCHHHHHHHHHH
Confidence            4699999999984 8888899 5 33  3455554432                  123467899999999999999999


Q ss_pred             HHcCCceEEEEEeecCCcCCCCHHHH-----HHHHHcCcEEEeCCcceEEEccCCc-EEEEEEEEeeecCCCCeecCCCc
Q psy16200         89 LRCGANKVLVVFRKGCTNIRAVPEEV-----QLAWEEKCEFLPFMSPVQVDVKDNK-IAGMQFNRTEQNEKGEWVEDEEQ  162 (183)
Q Consensus        89 ~~~G~~~V~lv~r~~~~~~~~~~~~~-----~~~~~~gv~~~~~~~~~~i~~~~~~-v~~v~~~~~~~~~~~~~~~~~g~  162 (183)
                      +++|. +|++++|++.. ++..+.++     ..+.+.||++++++.+.++..+++. +. +++             .+| 
T Consensus       187 ~~~g~-~Vtlv~~~~~~-l~~~~~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~~-v~~-------------~~g-  249 (450)
T PRK06116        187 NGLGS-ETHLFVRGDAP-LRGFDPDIRETLVEEMEKKGIRLHTNAVPKAVEKNADGSLT-LTL-------------EDG-  249 (450)
T ss_pred             HHcCC-eEEEEecCCCC-ccccCHHHHHHHHHHHHHCCcEEECCCEEEEEEEcCCceEE-EEE-------------cCC-
Confidence            99996 79999997653 44443332     3467889999999999999754332 32 332             123 


Q ss_pred             eEEEECCEEEEcccccccCC
Q psy16200        163 RIKLKANYIISAFGSTLLDN  182 (183)
Q Consensus       163 ~~~i~~D~Vi~a~G~~p~~~  182 (183)
                       .+++||.||+|+|++||++
T Consensus       250 -~~i~~D~Vv~a~G~~p~~~  268 (450)
T PRK06116        250 -ETLTVDCLIWAIGREPNTD  268 (450)
T ss_pred             -cEEEeCEEEEeeCCCcCCC
Confidence             3689999999999999986

>PRK14727 putative mercuric reductase; Provisional

Probab=99.72  E-value=1.2e-16  Score=137.80  Aligned_cols=133  Identities=20%  Similarity=0.214  Sum_probs=96.3

Q ss_pred             CCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHHH
Q psy16200          9 DGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSA   88 (183)
Q Consensus         9 ~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~l   88 (183)
                      ..||++|||||+ .|+.|++| | .+...+++..+.+..                  ...+++|+|||||++|+|+|..|
T Consensus       149 ~~~d~lViATGs-~p~~p~i~-G-~~~~~~~~~~~~l~~------------------~~~~k~vvVIGgG~iG~E~A~~l  207 (479)
T PRK14727        149 LAADRCLIATGS-TPTIPPIP-G-LMDTPYWTSTEALFS------------------DELPASLTVIGSSVVAAEIAQAY  207 (479)
T ss_pred             EEeCEEEEecCC-CCCCCCCC-C-cCccceecchHHhcc------------------ccCCCeEEEECCCHHHHHHHHHH
Confidence            469999999999 59989999 5 333334544443321                  22457899999999999999999


Q ss_pred             HHcCCceEEEEEeecCCcCCCCHHHH-----HHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCce
Q psy16200         89 LRCGANKVLVVFRKGCTNIRAVPEEV-----QLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQR  163 (183)
Q Consensus        89 ~~~G~~~V~lv~r~~~~~~~~~~~~~-----~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~  163 (183)
                      .++|. +|+++++. . .++..++++     ..+.+.||+++++..+.++..+++.+. ++.             ..+  
T Consensus       208 ~~~G~-~Vtlv~~~-~-~l~~~d~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~~~~-v~~-------------~~g--  268 (479)
T PRK14727        208 ARLGS-RVTILARS-T-LLFREDPLLGETLTACFEKEGIEVLNNTQASLVEHDDNGFV-LTT-------------GHG--  268 (479)
T ss_pred             HHcCC-EEEEEEcC-C-CCCcchHHHHHHHHHHHHhCCCEEEcCcEEEEEEEeCCEEE-EEE-------------cCC--
Confidence            99996 79999875 3 345444433     245678999999999988875434332 211             112  


Q ss_pred             EEEECCEEEEcccccccCC
Q psy16200        164 IKLKANYIISAFGSTLLDN  182 (183)
Q Consensus       164 ~~i~~D~Vi~a~G~~p~~~  182 (183)
                       ++++|.||+|+|+.||++
T Consensus       269 -~i~aD~VlvA~G~~pn~~  286 (479)
T PRK14727        269 -ELRAEKLLISTGRHANTH  286 (479)
T ss_pred             -eEEeCEEEEccCCCCCcc
Confidence             489999999999999975

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=99.72  E-value=9.4e-17  Score=146.16  Aligned_cols=140  Identities=14%  Similarity=0.176  Sum_probs=100.3

Q ss_pred             CCCCEEEEccCCCCCcccCCCCCCccCCCceehhhh--HHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHH
Q psy16200          9 DGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTF--LPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCAT   86 (183)
Q Consensus         9 ~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~   86 (183)
                      ..||++|||||+. |+.|++| | .+.++++...++  +.....              ....+++++|||||++|+|+|.
T Consensus       100 i~yD~LVIATGs~-p~~p~ip-G-~~~~~v~~~rt~~d~~~l~~--------------~~~~~k~vvVIGgG~iGlE~A~  162 (847)
T PRK14989        100 VFYDKLIMATGSY-PWIPPIK-G-SETQDCFVYRTIEDLNAIEA--------------CARRSKRGAVVGGGLLGLEAAG  162 (847)
T ss_pred             EECCEEEECCCCC-cCCCCCC-C-CCCCCeEEECCHHHHHHHHH--------------HHhcCCeEEEECCCHHHHHHHH
Confidence            4799999999995 8889999 5 566776532221  111111              1224577999999999999999


Q ss_pred             HHHHcCCceEEEEEeecCCcCCC-CHHH-----HHHHHHcCcEEEeCCcceEEEccC-CcEEEEEEEEeeecCCCCeecC
Q psy16200         87 SALRCGANKVLVVFRKGCTNIRA-VPEE-----VQLAWEEKCEFLPFMSPVQVDVKD-NKIAGMQFNRTEQNEKGEWVED  159 (183)
Q Consensus        87 ~l~~~G~~~V~lv~r~~~~~~~~-~~~~-----~~~~~~~gv~~~~~~~~~~i~~~~-~~v~~v~~~~~~~~~~~~~~~~  159 (183)
                      .|.++|. +|+++++.+.. ++. .+++     .+.+.+.||+++++..+.++..++ +.+..+++             .
T Consensus       163 ~L~~~G~-~VtvVe~~~~l-l~~~ld~~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~-------------~  227 (847)
T PRK14989        163 ALKNLGV-ETHVIEFAPML-MAEQLDQMGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRF-------------A  227 (847)
T ss_pred             HHHHcCC-eEEEEeccccc-hhhhcCHHHHHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEE-------------C
Confidence            9999997 69999987653 442 2222     234578899999999999997532 33333443             2


Q ss_pred             CCceEEEECCEEEEcccccccCC
Q psy16200        160 EEQRIKLKANYIISAFGSTLLDN  182 (183)
Q Consensus       160 ~g~~~~i~~D~Vi~a~G~~p~~~  182 (183)
                      +|+  ++++|.||+|+|++||++
T Consensus       228 dG~--~i~~D~Vv~A~G~rPn~~  248 (847)
T PRK14989        228 DGS--ELEVDFIVFSTGIRPQDK  248 (847)
T ss_pred             CCC--EEEcCEEEECCCcccCch
Confidence            333  699999999999999974

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=99.72  E-value=1.1e-16  Score=145.02  Aligned_cols=139  Identities=19%  Similarity=0.269  Sum_probs=101.4

Q ss_pred             CCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhH--HHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHH
Q psy16200          9 DGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFL--PRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCAT   86 (183)
Q Consensus         9 ~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~   86 (183)
                      ..||++|||||+. |+.|++| | .+.++++....+-  .....              ....+++|+|||||++|+|+|.
T Consensus        95 ~~yD~LVlATGs~-p~~p~ip-G-~~~~~v~~~rt~~d~~~i~~--------------~~~~~k~vvVVGgG~~GlE~A~  157 (785)
T TIGR02374        95 LSYDKLILATGSY-PFILPIP-G-ADKKGVYVFRTIEDLDAIMA--------------MAQRFKKAAVIGGGLLGLEAAV  157 (785)
T ss_pred             eeCCEEEECCCCC-cCCCCCC-C-CCCCCEEEeCCHHHHHHHHH--------------HhhcCCeEEEECCCHHHHHHHH
Confidence            4699999999994 8999999 5 6777876533221  11111              1123467999999999999999


Q ss_pred             HHHHcCCceEEEEEeecCCcCCC-CHHH-----HHHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCC
Q psy16200         87 SALRCGANKVLVVFRKGCTNIRA-VPEE-----VQLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDE  160 (183)
Q Consensus        87 ~l~~~G~~~V~lv~r~~~~~~~~-~~~~-----~~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~  160 (183)
                      .|.++|. +|+++++.+.. ++. .++.     ...+.+.||+++++..+.++.. ++.+..+++             .+
T Consensus       158 ~L~~~G~-~Vtvv~~~~~l-l~~~ld~~~~~~l~~~l~~~GV~v~~~~~v~~i~~-~~~~~~v~~-------------~d  221 (785)
T TIGR02374       158 GLQNLGM-DVSVIHHAPGL-MAKQLDQTAGRLLQRELEQKGLTFLLEKDTVEIVG-ATKADRIRF-------------KD  221 (785)
T ss_pred             HHHhcCC-eEEEEccCCch-hhhhcCHHHHHHHHHHHHHcCCEEEeCCceEEEEc-CCceEEEEE-------------CC
Confidence            9999997 79999987654 432 2222     2345778999999999999875 344554554             23


Q ss_pred             CceEEEECCEEEEcccccccCC
Q psy16200        161 EQRIKLKANYIISAFGSTLLDN  182 (183)
Q Consensus       161 g~~~~i~~D~Vi~a~G~~p~~~  182 (183)
                      |+  ++++|.||+|+|++||++
T Consensus       222 G~--~i~~D~Vi~a~G~~Pn~~  241 (785)
T TIGR02374       222 GS--SLEADLIVMAAGIRPNDE  241 (785)
T ss_pred             CC--EEEcCEEEECCCCCcCcH
Confidence            43  699999999999999874

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=99.72  E-value=1.6e-16  Score=135.81  Aligned_cols=133  Identities=19%  Similarity=0.250  Sum_probs=97.0

Q ss_pred             CCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHHH
Q psy16200          9 DGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSA   88 (183)
Q Consensus         9 ~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~l   88 (183)
                      ..||+||||||+. |+.|++| | .+.  .+++.+.+.                  ....+++|+|||||++|+|+|..+
T Consensus       129 ~~~d~lIiATGs~-p~~p~i~-G-~~~--~~~~~~~~~------------------l~~~~~~vvVIGgG~~g~E~A~~l  185 (446)
T TIGR01424       129 YTAKKILIAVGGR-PQKPNLP-G-HEL--GITSNEAFH------------------LPTLPKSILILGGGYIAVEFAGIW  185 (446)
T ss_pred             EEcCEEEEecCCc-CCCCCCC-C-ccc--eechHHhhc------------------ccccCCeEEEECCcHHHHHHHHHH
Confidence            4699999999994 8888899 5 332  334433332                  123567899999999999999999


Q ss_pred             HHcCCceEEEEEeecCCcCCCCHHHH-----HHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCce
Q psy16200         89 LRCGANKVLVVFRKGCTNIRAVPEEV-----QLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQR  163 (183)
Q Consensus        89 ~~~G~~~V~lv~r~~~~~~~~~~~~~-----~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~  163 (183)
                      .++|. +|+++++.+.. ++..+.++     ..+.+.||+++++..+.++..+++.+. +++             .++  
T Consensus       186 ~~~G~-~Vtli~~~~~~-l~~~d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~-v~~-------------~~g--  247 (446)
T TIGR01424       186 RGLGV-QVTLIYRGELI-LRGFDDDMRALLARNMEGRGIRIHPQTSLTSITKTDDGLK-VTL-------------SHG--  247 (446)
T ss_pred             HHcCC-eEEEEEeCCCC-CcccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeEE-EEE-------------cCC--
Confidence            99996 79999987653 44443332     235678999999999999875333332 322             122  


Q ss_pred             EEEECCEEEEcccccccCC
Q psy16200        164 IKLKANYIISAFGSTLLDN  182 (183)
Q Consensus       164 ~~i~~D~Vi~a~G~~p~~~  182 (183)
                      .++++|.||+|+|++||++
T Consensus       248 ~~i~~D~viva~G~~pn~~  266 (446)
T TIGR01424       248 EEIVADVVLFATGRSPNTK  266 (446)
T ss_pred             cEeecCEEEEeeCCCcCCC
Confidence            3689999999999999975

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PLN02546 glutathione reductase

Probab=99.71  E-value=2.7e-16  Score=137.63  Aligned_cols=133  Identities=20%  Similarity=0.189  Sum_probs=97.4

Q ss_pred             CCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHHH
Q psy16200          9 DGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSA   88 (183)
Q Consensus         9 ~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~l   88 (183)
                      ..||+||||||+ .|..|+|| |+ +  .++++.+++..                  ...+++|+|||||++|+|+|..|
T Consensus       215 ~~~D~LVIATGs-~p~~P~Ip-G~-~--~v~~~~~~l~~------------------~~~~k~V~VIGgG~iGvE~A~~L  271 (558)
T PLN02546        215 YTARNILIAVGG-RPFIPDIP-GI-E--HAIDSDAALDL------------------PSKPEKIAIVGGGYIALEFAGIF  271 (558)
T ss_pred             EECCEEEEeCCC-CCCCCCCC-Ch-h--hccCHHHHHhc------------------cccCCeEEEECCCHHHHHHHHHH
Confidence            469999999999 48888899 53 3  35555554421                  23457899999999999999999


Q ss_pred             HHcCCceEEEEEeecCCcCCCCHHHH-----HHHHHcCcEEEeCCcceEEEcc-CCcEEEEEEEEeeecCCCCeecCCCc
Q psy16200         89 LRCGANKVLVVFRKGCTNIRAVPEEV-----QLAWEEKCEFLPFMSPVQVDVK-DNKIAGMQFNRTEQNEKGEWVEDEEQ  162 (183)
Q Consensus        89 ~~~G~~~V~lv~r~~~~~~~~~~~~~-----~~~~~~gv~~~~~~~~~~i~~~-~~~v~~v~~~~~~~~~~~~~~~~~g~  162 (183)
                      .+.|. +|+++++.+.. ++..++++     ..+.++||+++++..+.++..+ ++.+. ++.             .  .
T Consensus       272 ~~~g~-~Vtlv~~~~~i-l~~~d~~~~~~l~~~L~~~GV~i~~~~~v~~i~~~~~g~v~-v~~-------------~--~  333 (558)
T PLN02546        272 NGLKS-DVHVFIRQKKV-LRGFDEEVRDFVAEQMSLRGIEFHTEESPQAIIKSADGSLS-LKT-------------N--K  333 (558)
T ss_pred             HhcCC-eEEEEEecccc-ccccCHHHHHHHHHHHHHCCcEEEeCCEEEEEEEcCCCEEE-EEE-------------C--C
Confidence            99986 79999987653 55554443     3456789999999999998753 33232 221             1  1


Q ss_pred             eEEEECCEEEEcccccccCC
Q psy16200        163 RIKLKANYIISAFGSTLLDN  182 (183)
Q Consensus       163 ~~~i~~D~Vi~a~G~~p~~~  182 (183)
                      .....+|.||+|+|++||++
T Consensus       334 g~~~~~D~Viva~G~~Pnt~  353 (558)
T PLN02546        334 GTVEGFSHVMFATGRKPNTK  353 (558)
T ss_pred             eEEEecCEEEEeeccccCCC
Confidence            22445899999999999985

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=99.71  E-value=2.3e-16  Score=137.11  Aligned_cols=141  Identities=13%  Similarity=0.150  Sum_probs=100.5

Q ss_pred             CCCCEEEEccCCCCCcccCCCCCCccC--CCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHH
Q psy16200          9 DGYTAIFIGIGKPNANVIPIFQGLTEE--MGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCAT   86 (183)
Q Consensus         9 ~~~davviATGa~~p~~l~i~gg~~~~--~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~   86 (183)
                      ..||.+|+|||+. |+.+++| |..++  .+++....                |+  .....+++|+|||||++|+|+|.
T Consensus       310 i~~d~lIlAtGa~-~~~~~ip-G~~~~~~~~v~~~~~----------------~~--~~~~~~k~VvViGgG~~g~E~A~  369 (515)
T TIGR03140       310 LKAKSVIVATGAR-WRKLGVP-GEKEYIGKGVAYCPH----------------CD--GPFFKGKDVAVIGGGNSGIEAAI  369 (515)
T ss_pred             EEeCEEEECCCCC-cCCCCCC-CHHHcCCCeEEEeec----------------cC--hhhcCCCEEEEECCcHHHHHHHH
Confidence            4689999999995 8888899 42222  23332110                01  11224578999999999999999


Q ss_pred             HHHHcCCceEEEEEeecCCcCCCCHHHHHHHHH-cCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCceEE
Q psy16200         87 SALRCGANKVLVVFRKGCTNIRAVPEEVQLAWE-EKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIK  165 (183)
Q Consensus        87 ~l~~~G~~~V~lv~r~~~~~~~~~~~~~~~~~~-~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~  165 (183)
                      .|++.|. +|+++++.+.  +.........+.+ +||++++++.+.++.+++++++++++.+.          .+++.++
T Consensus       370 ~L~~~g~-~Vtli~~~~~--l~~~~~l~~~l~~~~gV~i~~~~~v~~i~~~~~~v~~v~~~~~----------~~~~~~~  436 (515)
T TIGR03140       370 DLAGIVR-HVTVLEFADE--LKADKVLQDKLKSLPNVDILTSAQTTEIVGDGDKVTGIRYQDR----------NSGEEKQ  436 (515)
T ss_pred             HHHhcCc-EEEEEEeCCc--CChhHHHHHHHhcCCCCEEEECCeeEEEEcCCCEEEEEEEEEC----------CCCcEEE
Confidence            9999985 7999998754  2222222334444 69999999999999876567777776431          2345678


Q ss_pred             EECCEEEEcccccccCC
Q psy16200        166 LKANYIISAFGSTLLDN  182 (183)
Q Consensus       166 i~~D~Vi~a~G~~p~~~  182 (183)
                      ++||.|++|+|++||++
T Consensus       437 i~~D~vi~a~G~~Pn~~  453 (515)
T TIGR03140       437 LDLDGVFVQIGLVPNTE  453 (515)
T ss_pred             EEcCEEEEEeCCcCCch
Confidence            99999999999999975

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PRK13748 putative mercuric reductase; Provisional

Probab=99.71  E-value=2e-16  Score=138.63  Aligned_cols=133  Identities=23%  Similarity=0.282  Sum_probs=96.5

Q ss_pred             CCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHHH
Q psy16200          9 DGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSA   88 (183)
Q Consensus         9 ~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~l   88 (183)
                      ..||+||||||+ .|+.|++| |+ +...+++..+.+..                  ...+++|+|||||++|+|+|..|
T Consensus       231 ~~~d~lviAtGs-~p~~p~i~-g~-~~~~~~~~~~~~~~------------------~~~~~~vvViGgG~ig~E~A~~l  289 (561)
T PRK13748        231 VAFDRCLIATGA-SPAVPPIP-GL-KETPYWTSTEALVS------------------DTIPERLAVIGSSVVALELAQAF  289 (561)
T ss_pred             EEcCEEEEcCCC-CCCCCCCC-CC-CccceEccHHHhhc------------------ccCCCeEEEECCCHHHHHHHHHH
Confidence            469999999999 48888999 53 33334544443321                  23457899999999999999999


Q ss_pred             HHcCCceEEEEEeecCCcCCCCHHHH-----HHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCce
Q psy16200         89 LRCGANKVLVVFRKGCTNIRAVPEEV-----QLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQR  163 (183)
Q Consensus        89 ~~~G~~~V~lv~r~~~~~~~~~~~~~-----~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~  163 (183)
                      .++|. +|++++|..  .++..+.++     +.+.+.||+++++..+.++..+++.+. +..              ++. 
T Consensus       290 ~~~g~-~Vtli~~~~--~l~~~d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~-v~~--------------~~~-  350 (561)
T PRK13748        290 ARLGS-KVTILARST--LFFREDPAIGEAVTAAFRAEGIEVLEHTQASQVAHVDGEFV-LTT--------------GHG-  350 (561)
T ss_pred             HHcCC-EEEEEecCc--cccccCHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEE-EEe--------------cCC-
Confidence            99996 799999853  244443332     345678999999999998875444332 221              112 


Q ss_pred             EEEECCEEEEcccccccCC
Q psy16200        164 IKLKANYIISAFGSTLLDN  182 (183)
Q Consensus       164 ~~i~~D~Vi~a~G~~p~~~  182 (183)
                       ++++|.||+|+|++||++
T Consensus       351 -~i~~D~vi~a~G~~pn~~  368 (561)
T PRK13748        351 -ELRADKLLVATGRAPNTR  368 (561)
T ss_pred             -eEEeCEEEEccCCCcCCC
Confidence             589999999999999985

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=99.70  E-value=5e-16  Score=125.13  Aligned_cols=139  Identities=24%  Similarity=0.223  Sum_probs=99.3

Q ss_pred             CCCCEEEEccCCCCCcccCCCCCCccC--CCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHH
Q psy16200          9 DGYTAIFIGIGKPNANVIPIFQGLTEE--MGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCAT   86 (183)
Q Consensus         9 ~~~davviATGa~~p~~l~i~gg~~~~--~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~   86 (183)
                      ..||.+|+|||+. |+.+++| |...+  .+++.... ..                 .....+++|+|||+|++|+|+|.
T Consensus        99 ~~~d~liiAtG~~-~~~~~i~-g~~~~~~~~~~~~~~-~~-----------------~~~~~~~~v~ViG~G~~~~e~a~  158 (300)
T TIGR01292        99 YTAKAVIIATGAS-ARKLGIP-GEDEFLGRGVSYCAT-CD-----------------GPFFKNKEVAVVGGGDSAIEEAL  158 (300)
T ss_pred             EEeCEEEECCCCC-cccCCCC-ChhhcCCccEEEeee-cC-----------------hhhcCCCEEEEECCChHHHHHHH
Confidence            4699999999984 8888898 52221  22322111 10                 01223467999999999999999


Q ss_pred             HHHHcCCceEEEEEeecCCcCCCCHHHHHHHHHc-CcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCceEE
Q psy16200         87 SALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEE-KCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIK  165 (183)
Q Consensus        87 ~l~~~G~~~V~lv~r~~~~~~~~~~~~~~~~~~~-gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~  165 (183)
                      .|++.+. +|++++|++.  +...+.....+.+. ||++++++.+.++..+ +++..+++.+.          .+++.++
T Consensus       159 ~l~~~~~-~V~~v~~~~~--~~~~~~~~~~l~~~~gv~~~~~~~v~~i~~~-~~~~~v~~~~~----------~~g~~~~  224 (300)
T TIGR01292       159 YLTRIAK-KVTLVHRRDK--FRAEKILLDRLRKNPNIEFLWNSTVKEIVGD-NKVEGVKIKNT----------VTGEEEE  224 (300)
T ss_pred             HHHhhcC-EEEEEEeCcc--cCcCHHHHHHHHhCCCeEEEeccEEEEEEcc-CcEEEEEEEec----------CCCceEE
Confidence            9999875 7999999764  33444445566676 9999999999999753 45555555321          2456678


Q ss_pred             EECCEEEEcccccccC
Q psy16200        166 LKANYIISAFGSTLLD  181 (183)
Q Consensus       166 i~~D~Vi~a~G~~p~~  181 (183)
                      +++|+||+|+|++|+.
T Consensus       225 i~~D~vi~a~G~~~~~  240 (300)
T TIGR01292       225 LKVDGVFIAIGHEPNT  240 (300)
T ss_pred             EEccEEEEeeCCCCCh
Confidence            9999999999999986

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=99.70  E-value=3.7e-16  Score=135.90  Aligned_cols=141  Identities=13%  Similarity=0.138  Sum_probs=101.8

Q ss_pred             CCCCEEEEccCCCCCcccCCCCCCccC--CCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHH
Q psy16200          9 DGYTAIFIGIGKPNANVIPIFQGLTEE--MGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCAT   86 (183)
Q Consensus         9 ~~~davviATGa~~p~~l~i~gg~~~~--~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~   86 (183)
                      ..||.||+|||+ .|+.+++| |..++  .++++...                |+  .....+++|+|||||++|+|+|.
T Consensus       309 i~a~~vViAtG~-~~r~~~ip-G~~~~~~~~v~~~~~----------------~~--~~~~~gk~VvVVGgG~~g~e~A~  368 (517)
T PRK15317        309 LKAKTVILATGA-RWRNMNVP-GEDEYRNKGVAYCPH----------------CD--GPLFKGKRVAVIGGGNSGVEAAI  368 (517)
T ss_pred             EEcCEEEECCCC-CcCCCCCC-CHHHhcCceEEEeec----------------cC--chhcCCCEEEEECCCHHHHHHHH
Confidence            358999999999 48888899 53333  23332210                01  11224567999999999999999


Q ss_pred             HHHHcCCceEEEEEeecCCcCCCCHHHHHHHHH-cCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCceEE
Q psy16200         87 SALRCGANKVLVVFRKGCTNIRAVPEEVQLAWE-EKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIK  165 (183)
Q Consensus        87 ~l~~~G~~~V~lv~r~~~~~~~~~~~~~~~~~~-~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~  165 (183)
                      .|+..+. +|+++++++.  +.........+.+ .||++++++.+.++.+++++++++++.+.          .++++.+
T Consensus       369 ~L~~~~~-~Vtlv~~~~~--l~~~~~l~~~l~~~~gI~i~~~~~v~~i~~~~g~v~~v~~~~~----------~~g~~~~  435 (517)
T PRK15317        369 DLAGIVK-HVTVLEFAPE--LKADQVLQDKLRSLPNVTIITNAQTTEVTGDGDKVTGLTYKDR----------TTGEEHH  435 (517)
T ss_pred             HHHhcCC-EEEEEEECcc--ccccHHHHHHHhcCCCcEEEECcEEEEEEcCCCcEEEEEEEEC----------CCCcEEE
Confidence            9999975 8999998754  3333323333443 69999999999999876577877777531          2455678


Q ss_pred             EECCEEEEcccccccCC
Q psy16200        166 LKANYIISAFGSTLLDN  182 (183)
Q Consensus       166 i~~D~Vi~a~G~~p~~~  182 (183)
                      ++||+|++++|++||++
T Consensus       436 i~~D~v~~~~G~~p~~~  452 (517)
T PRK15317        436 LELEGVFVQIGLVPNTE  452 (517)
T ss_pred             EEcCEEEEeECCccCch
Confidence            99999999999999874

>PTZ00052 thioredoxin reductase; Provisional

Probab=99.70  E-value=3.8e-16  Score=135.30  Aligned_cols=134  Identities=19%  Similarity=0.222  Sum_probs=96.3

Q ss_pred             hCCCCEEEEccCCCCCcccC-CCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHH
Q psy16200          8 KDGYTAIFIGIGKPNANVIP-IFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCAT   86 (183)
Q Consensus         8 ~~~~davviATGa~~p~~l~-i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~   86 (183)
                      ...||+||||||+. |+.|+ +| | .+. ..+++.+++..                  ...+++++|||||++|+|+|.
T Consensus       142 ~i~~d~lIIATGs~-p~~p~~i~-G-~~~-~~~~~~~~~~~------------------~~~~~~vvIIGgG~iG~E~A~  199 (499)
T PTZ00052        142 TITAKYILIATGGR-PSIPEDVP-G-AKE-YSITSDDIFSL------------------SKDPGKTLIVGASYIGLETAG  199 (499)
T ss_pred             EEECCEEEEecCCC-CCCCCCCC-C-ccc-eeecHHHHhhh------------------hcCCCeEEEECCCHHHHHHHH
Confidence            35799999999995 77664 88 5 332 23455555432                  234578999999999999999


Q ss_pred             HHHHcCCceEEEEEeecCCcCCCCHHHH-----HHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCC
Q psy16200         87 SALRCGANKVLVVFRKGCTNIRAVPEEV-----QLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEE  161 (183)
Q Consensus        87 ~l~~~G~~~V~lv~r~~~~~~~~~~~~~-----~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g  161 (183)
                      .|+++|. +|++++++ .. ++..+.++     ..+.+.||+++++..+.++...++.+. +++             .+|
T Consensus       200 ~l~~~G~-~Vtli~~~-~~-l~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~~~-v~~-------------~~g  262 (499)
T PTZ00052        200 FLNELGF-DVTVAVRS-IP-LRGFDRQCSEKVVEYMKEQGTLFLEGVVPINIEKMDDKIK-VLF-------------SDG  262 (499)
T ss_pred             HHHHcCC-cEEEEEcC-cc-cccCCHHHHHHHHHHHHHcCCEEEcCCeEEEEEEcCCeEE-EEE-------------CCC
Confidence            9999997 69999874 32 45443332     345678999999999988875333332 333             123


Q ss_pred             ceEEEECCEEEEcccccccCC
Q psy16200        162 QRIKLKANYIISAFGSTLLDN  182 (183)
Q Consensus       162 ~~~~i~~D~Vi~a~G~~p~~~  182 (183)
                      +  ++++|.||+|+|++||++
T Consensus       263 ~--~i~~D~vl~a~G~~pn~~  281 (499)
T PTZ00052        263 T--TELFDTVLYATGRKPDIK  281 (499)
T ss_pred             C--EEEcCEEEEeeCCCCCcc
Confidence            3  579999999999999986

>PRK14694 putative mercuric reductase; Provisional

Probab=99.70  E-value=4.2e-16  Score=134.03  Aligned_cols=133  Identities=25%  Similarity=0.322  Sum_probs=95.7

Q ss_pred             CCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHHH
Q psy16200          9 DGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSA   88 (183)
Q Consensus         9 ~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~l   88 (183)
                      ..||.+|||||+ .|+.|++| |+ +...++++.+.+.                  ....+++|+|||+|++|+|+|..|
T Consensus       139 ~~~d~lViATGs-~p~~p~i~-G~-~~~~~~~~~~~~~------------------l~~~~~~vvViG~G~~G~E~A~~l  197 (468)
T PRK14694        139 VHFDRAFIGTGA-RPAEPPVP-GL-AETPYLTSTSALE------------------LDHIPERLLVIGASVVALELAQAF  197 (468)
T ss_pred             EECCEEEEeCCC-CCCCCCCC-CC-CCCceEcchhhhc------------------hhcCCCeEEEECCCHHHHHHHHHH
Confidence            469999999999 58989999 54 3333444433321                  123457899999999999999999


Q ss_pred             HHcCCceEEEEEeecCCcCCCCHHHH-----HHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCce
Q psy16200         89 LRCGANKVLVVFRKGCTNIRAVPEEV-----QLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQR  163 (183)
Q Consensus        89 ~~~G~~~V~lv~r~~~~~~~~~~~~~-----~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~  163 (183)
                      .++|. +|+++++. + .++..++++     +.+.+.||+++++..+.++..+++.+. ++.              ++. 
T Consensus       198 ~~~g~-~Vtlv~~~-~-~l~~~~~~~~~~l~~~l~~~GI~v~~~~~v~~i~~~~~~~~-v~~--------------~~~-  258 (468)
T PRK14694        198 ARLGS-RVTVLARS-R-VLSQEDPAVGEAIEAAFRREGIEVLKQTQASEVDYNGREFI-LET--------------NAG-  258 (468)
T ss_pred             HHcCC-eEEEEECC-C-CCCCCCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEE-EEE--------------CCC-
Confidence            99996 79999864 3 244443332     245678999999999998875433222 221              122 


Q ss_pred             EEEECCEEEEcccccccCC
Q psy16200        164 IKLKANYIISAFGSTLLDN  182 (183)
Q Consensus       164 ~~i~~D~Vi~a~G~~p~~~  182 (183)
                       ++++|.||+|+|++||++
T Consensus       259 -~i~~D~vi~a~G~~pn~~  276 (468)
T PRK14694        259 -TLRAEQLLVATGRTPNTE  276 (468)
T ss_pred             -EEEeCEEEEccCCCCCcC
Confidence             599999999999999975

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=99.70  E-value=4.7e-16  Score=130.17  Aligned_cols=138  Identities=21%  Similarity=0.192  Sum_probs=95.8

Q ss_pred             CCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHHH
Q psy16200          9 DGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSA   88 (183)
Q Consensus         9 ~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~l   88 (183)
                      ..||++|||||+. |+.|++| | .+.  +++..++.......            .....+++|+|||||++|+|+|..|
T Consensus        98 ~~yd~LVlATG~~-~~~p~i~-G-~~~--v~~~~~~~~~~~~~------------~~~~~~~~vvViGgG~~g~e~A~~L  160 (377)
T PRK04965         98 WQYDKLVLATGAS-AFVPPIP-G-REL--MLTLNSQQEYRAAE------------TQLRDAQRVLVVGGGLIGTELAMDL  160 (377)
T ss_pred             EeCCEEEECCCCC-CCCCCCC-C-Cce--EEEECCHHHHHHHH------------HHhhcCCeEEEECCCHHHHHHHHHH
Confidence            4699999999995 8888999 5 443  44433222111100            0112346799999999999999999


Q ss_pred             HHcCCceEEEEEeecCCcCCC-CHHH-----HHHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCc
Q psy16200         89 LRCGANKVLVVFRKGCTNIRA-VPEE-----VQLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQ  162 (183)
Q Consensus        89 ~~~G~~~V~lv~r~~~~~~~~-~~~~-----~~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~  162 (183)
                      .+.|. +|+++++++.. ++. .+.+     ...+.+.||+++++..+.++..+++.+. +++             .+| 
T Consensus       161 ~~~g~-~Vtlv~~~~~~-l~~~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~-v~~-------------~~g-  223 (377)
T PRK04965        161 CRAGK-AVTLVDNAASL-LASLMPPEVSSRLQHRLTEMGVHLLLKSQLQGLEKTDSGIR-ATL-------------DSG-  223 (377)
T ss_pred             HhcCC-eEEEEecCCcc-cchhCCHHHHHHHHHHHHhCCCEEEECCeEEEEEccCCEEE-EEE-------------cCC-
Confidence            99986 79999998653 322 1221     2345778999999999999875433332 333             123 


Q ss_pred             eEEEECCEEEEcccccccC
Q psy16200        163 RIKLKANYIISAFGSTLLD  181 (183)
Q Consensus       163 ~~~i~~D~Vi~a~G~~p~~  181 (183)
                       .+++||.||+|+|+.||+
T Consensus       224 -~~i~~D~vI~a~G~~p~~  241 (377)
T PRK04965        224 -RSIEVDAVIAAAGLRPNT  241 (377)
T ss_pred             -cEEECCEEEECcCCCcch
Confidence             369999999999999985

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=99.69  E-value=3.9e-16  Score=132.59  Aligned_cols=139  Identities=15%  Similarity=0.150  Sum_probs=97.6

Q ss_pred             CCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCC-CCCcceEEEEcCChhHHHHHHHH
Q psy16200         10 GYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESL-PILKGTVIVLGAGDTAFDCATSA   88 (183)
Q Consensus        10 ~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~VvViGgG~~g~e~A~~l   88 (183)
                      .||++|||||+ .|+.+++| | .+.+++++..++........           .. ...+++|+|||||++|+|+|..|
T Consensus        91 ~yd~lIiATG~-~p~~~~i~-G-~~~~~v~~~~~~~~~~~~~~-----------~l~~~~~~~vvViGgG~~g~e~A~~l  156 (427)
T TIGR03385        91 SYDYLILSPGA-SPIVPNIE-G-INLDIVFTLRNLEDTDAIKQ-----------YIDKNKVENVVIIGGGYIGIEMAEAL  156 (427)
T ss_pred             CCCEEEECCCC-CCCCCCCC-C-cCCCCEEEECCHHHHHHHHH-----------HHhhcCCCeEEEECCCHHHHHHHHHH
Confidence            49999999999 58888999 5 55567776544332111000           00 12347899999999999999999


Q ss_pred             HHcCCceEEEEEeecCCcCCCCHHHH-----HHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCce
Q psy16200         89 LRCGANKVLVVFRKGCTNIRAVPEEV-----QLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQR  163 (183)
Q Consensus        89 ~~~G~~~V~lv~r~~~~~~~~~~~~~-----~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~  163 (183)
                      ++.|. +|+++++++....+..+.++     +.+.+.||+++++..+.++..+ +.+  +.+             .+|+ 
T Consensus       157 ~~~g~-~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~-~~~--v~~-------------~~g~-  218 (427)
T TIGR03385       157 RERGK-NVTLIHRSERILNKLFDEEMNQIVEEELKKHEINLRLNEEVDSIEGE-ERV--KVF-------------TSGG-  218 (427)
T ss_pred             HhCCC-cEEEEECCcccCccccCHHHHHHHHHHHHHcCCEEEeCCEEEEEecC-CCE--EEE-------------cCCC-
Confidence            99997 69999987653223332222     3456789999999999998753 333  222             1233 


Q ss_pred             EEEECCEEEEcccccccC
Q psy16200        164 IKLKANYIISAFGSTLLD  181 (183)
Q Consensus       164 ~~i~~D~Vi~a~G~~p~~  181 (183)
                       ++++|.||+|+|++||+
T Consensus       219 -~i~~D~vi~a~G~~p~~  235 (427)
T TIGR03385       219 -VYQADMVILATGIKPNS  235 (427)
T ss_pred             -EEEeCEEEECCCccCCH
Confidence             68999999999999986

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=99.69  E-value=9e-16  Score=131.54  Aligned_cols=136  Identities=21%  Similarity=0.201  Sum_probs=96.4

Q ss_pred             CCCCEEEEccCCCCCcccCCCCCCc--cCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHH
Q psy16200          9 DGYTAIFIGIGKPNANVIPIFQGLT--EEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCAT   86 (183)
Q Consensus         9 ~~~davviATGa~~p~~l~i~gg~~--~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~   86 (183)
                      ..||++|||||+.   .|++| |..  ...++++..+.+.                  ....+++|+|||||++|+|+|.
T Consensus       129 ~~~d~lIiATGs~---~p~ip-g~~~~~~~~~~~~~~~~~------------------~~~~~k~v~VIGgG~~g~E~A~  186 (460)
T PRK06292        129 IEAKNIVIATGSR---VPPIP-GVWLILGDRLLTSDDAFE------------------LDKLPKSLAVIGGGVIGLELGQ  186 (460)
T ss_pred             EEeCEEEEeCCCC---CCCCC-CCcccCCCcEECchHHhC------------------ccccCCeEEEECCCHHHHHHHH
Confidence            4689999999984   45677 432  2334555444331                  1235678999999999999999


Q ss_pred             HHHHcCCceEEEEEeecCCcCCCCHHHHH-----HHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCC
Q psy16200         87 SALRCGANKVLVVFRKGCTNIRAVPEEVQ-----LAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEE  161 (183)
Q Consensus        87 ~l~~~G~~~V~lv~r~~~~~~~~~~~~~~-----~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g  161 (183)
                      .|+++|. +|++++|+++. ++..+.++.     .+.+. |+++++..+.++..+++  ..+++..           .++
T Consensus       187 ~l~~~g~-~Vtli~~~~~~-l~~~d~~~~~~~~~~l~~~-I~i~~~~~v~~i~~~~~--~~v~~~~-----------~~~  250 (460)
T PRK06292        187 ALSRLGV-KVTVFERGDRI-LPLEDPEVSKQAQKILSKE-FKIKLGAKVTSVEKSGD--EKVEELE-----------KGG  250 (460)
T ss_pred             HHHHcCC-cEEEEecCCCc-CcchhHHHHHHHHHHHhhc-cEEEcCCEEEEEEEcCC--ceEEEEE-----------cCC
Confidence            9999997 69999998754 554444332     34566 99999999999975333  1233321           234


Q ss_pred             ceEEEECCEEEEcccccccCC
Q psy16200        162 QRIKLKANYIISAFGSTLLDN  182 (183)
Q Consensus       162 ~~~~i~~D~Vi~a~G~~p~~~  182 (183)
                      +..++++|.|++|+|++||++
T Consensus       251 ~~~~i~~D~vi~a~G~~p~~~  271 (460)
T PRK06292        251 KTETIEADYVLVATGRRPNTD  271 (460)
T ss_pred             ceEEEEeCEEEEccCCccCCC
Confidence            556899999999999999986

>KOG1335|consensus

Probab=99.66  E-value=1.2e-15  Score=125.12  Aligned_cols=138  Identities=17%  Similarity=0.211  Sum_probs=105.0

Q ss_pred             CCEEEEccCCCCCcccCCCCCCc-cCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHHHH
Q psy16200         11 YTAIFIGIGKPNANVIPIFQGLT-EEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSAL   89 (183)
Q Consensus        11 ~davviATGa~~p~~l~i~gg~~-~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~l~   89 (183)
                      .+.+||||||..   +++| |+. |.+-|+++...|.                  +...|++.+|||+|++|+|++....
T Consensus       174 aKnIiiATGSeV---~~~P-GI~IDekkIVSStgALs------------------L~~vPk~~~viG~G~IGLE~gsV~~  231 (506)
T KOG1335|consen  174 AKNIIIATGSEV---TPFP-GITIDEKKIVSSTGALS------------------LKEVPKKLTVIGAGYIGLEMGSVWS  231 (506)
T ss_pred             eeeEEEEeCCcc---CCCC-CeEecCceEEecCCccc------------------hhhCcceEEEEcCceeeeehhhHHH
Confidence            578999999842   3566 432 5566777666553                  3457899999999999999999999


Q ss_pred             HcCCceEEEEEeecCCcCCCCHHHHHH-----HHHcCcEEEeCCcceEEEccC-CcEEEEEEEEeeecCCCCeecCCCce
Q psy16200         90 RCGANKVLVVFRKGCTNIRAVPEEVQL-----AWEEKCEFLPFMSPVQVDVKD-NKIAGMQFNRTEQNEKGEWVEDEEQR  163 (183)
Q Consensus        90 ~~G~~~V~lv~r~~~~~~~~~~~~~~~-----~~~~gv~~~~~~~~~~i~~~~-~~v~~v~~~~~~~~~~~~~~~~~g~~  163 (183)
                      ++|+ +||+|+--+.. ++..+.|+..     +..+|+.|++++.+....... +.|. |++...          .+++.
T Consensus       232 rLGs-eVT~VEf~~~i-~~~mD~Eisk~~qr~L~kQgikF~l~tkv~~a~~~~dg~v~-i~ve~a----------k~~k~  298 (506)
T KOG1335|consen  232 RLGS-EVTVVEFLDQI-GGVMDGEISKAFQRVLQKQGIKFKLGTKVTSATRNGDGPVE-IEVENA----------KTGKK  298 (506)
T ss_pred             hcCC-eEEEEEehhhh-ccccCHHHHHHHHHHHHhcCceeEeccEEEEeeccCCCceE-EEEEec----------CCCce
Confidence            9998 69999876553 5556666543     467899999999999887643 3554 555432          46678


Q ss_pred             EEEECCEEEEcccccccCCC
Q psy16200        164 IKLKANYIISAFGSTLLDND  183 (183)
Q Consensus       164 ~~i~~D~Vi~a~G~~p~~~~  183 (183)
                      .+++||.+++|+|++|.+++
T Consensus       299 ~tle~DvlLVsiGRrP~t~G  318 (506)
T KOG1335|consen  299 ETLECDVLLVSIGRRPFTEG  318 (506)
T ss_pred             eEEEeeEEEEEccCcccccC
Confidence            89999999999999998863

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=99.65  E-value=2.2e-15  Score=128.49  Aligned_cols=139  Identities=18%  Similarity=0.222  Sum_probs=97.8

Q ss_pred             CCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCC-CCCcceEEEEcCChhHHHHHHHH
Q psy16200         10 GYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESL-PILKGTVIVLGAGDTAFDCATSA   88 (183)
Q Consensus        10 ~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~VvViGgG~~g~e~A~~l   88 (183)
                      .||++|||||+. |+.|++| | .+.+++++..++........           .. ...+++|+|||||++|+|+|..|
T Consensus       103 ~yd~lviAtG~~-~~~~~i~-g-~~~~~v~~~~~~~~~~~l~~-----------~l~~~~~~~vvVvGgG~~g~e~A~~l  168 (444)
T PRK09564        103 TYDKLMIATGAR-PIIPPIK-N-INLENVYTLKSMEDGLALKE-----------LLKDEEIKNIVIIGAGFIGLEAVEAA  168 (444)
T ss_pred             cCCEEEECCCCC-CCCCCCC-C-cCCCCEEEECCHHHHHHHHH-----------HHhhcCCCEEEEECCCHHHHHHHHHH
Confidence            499999999994 8888899 5 56677876544332211100           00 12357899999999999999999


Q ss_pred             HHcCCceEEEEEeecCCcCC-CCHHHH-----HHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCc
Q psy16200         89 LRCGANKVLVVFRKGCTNIR-AVPEEV-----QLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQ  162 (183)
Q Consensus        89 ~~~G~~~V~lv~r~~~~~~~-~~~~~~-----~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~  162 (183)
                      .+.|. +|+++++++.. ++ ..++++     +.+.+.||++++++.+.++.. ++.+..+..              ++.
T Consensus       169 ~~~g~-~Vtli~~~~~~-l~~~~~~~~~~~l~~~l~~~gI~v~~~~~v~~i~~-~~~~~~v~~--------------~~~  231 (444)
T PRK09564        169 KHLGK-NVRIIQLEDRI-LPDSFDKEITDVMEEELRENGVELHLNEFVKSLIG-EDKVEGVVT--------------DKG  231 (444)
T ss_pred             HhcCC-cEEEEeCCccc-CchhcCHHHHHHHHHHHHHCCCEEEcCCEEEEEec-CCcEEEEEe--------------CCC
Confidence            99996 79999987653 33 223322     245678999999999999864 344432321              222


Q ss_pred             eEEEECCEEEEcccccccC
Q psy16200        163 RIKLKANYIISAFGSTLLD  181 (183)
Q Consensus       163 ~~~i~~D~Vi~a~G~~p~~  181 (183)
                        +++||.||+|+|+.||+
T Consensus       232 --~i~~d~vi~a~G~~p~~  248 (444)
T PRK09564        232 --EYEADVVIVATGVKPNT  248 (444)
T ss_pred             --EEEcCEEEECcCCCcCH
Confidence              58999999999999985

>PTZ00188 adrenodoxin reductase; Provisional

Probab=99.65  E-value=5e-15  Score=126.63  Aligned_cols=174  Identities=18%  Similarity=0.223  Sum_probs=114.5

Q ss_pred             CChhhhhhCCCCEEEEccCCCCCcccCCC---------CCCcc----CCCceehhhhHHHHhccccCCccCCCCCCCCCC
Q psy16200          1 MPTLKLRKDGYTAIFIGIGKPNANVIPIF---------QGLTE----EMGFYTSKTFLPRVATSSKKGLCGGCKKESLPI   67 (183)
Q Consensus         1 ~~~~~l~~~~~davviATGa~~p~~l~i~---------gg~~~----~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~   67 (183)
                      +|.++|++ .||+||+|||+. +..+||+         || ++    ..|++.+.+|..+++.....-.|-..+. -..+
T Consensus       118 vt~eeL~~-~YDAVIlAtGA~-~l~ipi~~~~~~~~~~GG-e~~~~~l~Gvf~A~dfV~WYNg~p~~~~~~~~~a-yL~p  193 (506)
T PTZ00188        118 LKMEELRN-HYNCVIFCCGAS-EVSIPIGQQDEDKAVSGG-ETNPRKQNGIFHARDLIYFYNNMYNDVRCKAVDN-YLNS  193 (506)
T ss_pred             cCHHHHHh-cCCEEEEEcCCC-CCCCCcccccceeeeccc-cccccccCcEEehheEEEeecCCCCccccccccc-cccc
Confidence            57889987 699999999996 4444432         23 44    5699999999888765321100000010 0111


Q ss_pred             --CcceEEEEcCChhHHHHHHHH--------------------HHcCCceEEEEEeecCCcCCCCHHH------------
Q psy16200         68 --LKGTVIVLGAGDTAFDCATSA--------------------LRCGANKVLVVFRKGCTNIRAVPEE------------  113 (183)
Q Consensus        68 --~~~~VvViGgG~~g~e~A~~l--------------------~~~G~~~V~lv~r~~~~~~~~~~~~------------  113 (183)
                        ..++++|||.|++|+|+|+.|                    .+.+.++|+||.||+..+......|            
T Consensus       194 ~~~~~~vvVIG~GNVAlDvARiL~~~~d~L~~TDI~~~aL~~L~~s~v~~V~ivgRRGp~qaaFT~kElrEL~~l~~~~v  273 (506)
T PTZ00188        194 FENFTTSIIIGNGNVSLDIARILIKSPDDLSKTDISSDYLKVIKRHNIKHIYIVGRRGFWQSSFTNAELRELISLENTKV  273 (506)
T ss_pred             cCCCCcEEEECCCchHHHHHHHHccCHHHhhcCCCcHHHHHHHHhCCCcEEEEEEecCHHHhCCCHHHHHHHhcCCCCeE
Confidence              224699999999999999974                    4557789999999874322211110            


Q ss_pred             ------H---------------------------HHHHH-----------cCcEEEeCCcceEEEccCCcEEEEEEEEee
Q psy16200        114 ------V---------------------------QLAWE-----------EKCEFLPFMSPVQVDVKDNKIAGMQFNRTE  149 (183)
Q Consensus       114 ------~---------------------------~~~~~-----------~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~  149 (183)
                            +                           ....+           ..+.|++..+|.+|.+++++|+++++.+++
T Consensus       274 ~v~~~d~~~~~~~~~~~~~~r~~~r~~~~~~~~l~~~~~~~~~~~~~~~~r~i~l~F~~sP~ei~~~~~~v~~v~~~~n~  353 (506)
T PTZ00188        274 ILSKKNYDLCCHLKSDEENTNMKKRQHEIFQKMVKNYEEVEKNKEFYKTYKIIEFIFYFEIRQIRPIDGAMKNVELELNK  353 (506)
T ss_pred             EEChhhhcccccccchhhhhhhhhhhhhHHHHHHHHHHhhccCccCCCCceEEEEEccCCceEEECCCCcEeEEEEEEee
Confidence                  0                           00010           236788899999998644789999998765


Q ss_pred             ecCCCCeecCCCceEEEECCEEEEccccccc
Q psy16200        150 QNEKGEWVEDEEQRIKLKANYIISAFGSTLL  180 (183)
Q Consensus       150 ~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~  180 (183)
                      +.. +.. ..+|+.++++||+|+-|+||+..
T Consensus       354 l~~-~~~-~~tg~~~~~~~~lV~rsiGY~g~  382 (506)
T PTZ00188        354 NVP-MSF-SSFKENKVLVTPLVIFATGFKKS  382 (506)
T ss_pred             ccc-Ccc-CCCCeeEEEEcCEEEEcccccCC
Confidence            522 221 34677889999999999999864

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=99.64  E-value=3.6e-15  Score=127.34  Aligned_cols=136  Identities=13%  Similarity=0.133  Sum_probs=92.6

Q ss_pred             CCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHHH
Q psy16200          9 DGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSA   88 (183)
Q Consensus         9 ~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~l   88 (183)
                      ..||++|||||+. |+.|+++     .+++++..++.........          -....+++|+|||||++|+|+|..|
T Consensus       104 ~~yd~lviAtGs~-~~~~~~~-----~~~~~~~~~~~~~~~l~~~----------l~~~~~~~vvViGgG~ig~E~A~~l  167 (438)
T PRK13512        104 ESYDKLILSPGAS-ANSLGFE-----SDITFTLRNLEDTDAIDQF----------IKANQVDKALVVGAGYISLEVLENL  167 (438)
T ss_pred             eecCEEEECCCCC-CCCCCCC-----CCCeEEecCHHHHHHHHHH----------HhhcCCCEEEEECCCHHHHHHHHHH
Confidence            4799999999995 7766554     2345443322221110000          0012457899999999999999999


Q ss_pred             HHcCCceEEEEEeecCCcCCCCHHHH-----HHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCce
Q psy16200         89 LRCGANKVLVVFRKGCTNIRAVPEEV-----QLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQR  163 (183)
Q Consensus        89 ~~~G~~~V~lv~r~~~~~~~~~~~~~-----~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~  163 (183)
                      +++|. +|++++++++. ++..+.++     +.+.+.||+++++..+.++..  ..   +++             .+|+ 
T Consensus       168 ~~~g~-~Vtli~~~~~l-~~~~d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~--~~---v~~-------------~~g~-  226 (438)
T PRK13512        168 YERGL-HPTLIHRSDKI-NKLMDADMNQPILDELDKREIPYRLNEEIDAING--NE---VTF-------------KSGK-  226 (438)
T ss_pred             HhCCC-cEEEEeccccc-chhcCHHHHHHHHHHHHhcCCEEEECCeEEEEeC--CE---EEE-------------CCCC-
Confidence            99997 69999998653 44433322     345678999999999998863  22   333             1232 


Q ss_pred             EEEECCEEEEcccccccCC
Q psy16200        164 IKLKANYIISAFGSTLLDN  182 (183)
Q Consensus       164 ~~i~~D~Vi~a~G~~p~~~  182 (183)
                       +++||.|++|+|++||++
T Consensus       227 -~~~~D~vl~a~G~~pn~~  244 (438)
T PRK13512        227 -VEHYDMIIEGVGTHPNSK  244 (438)
T ss_pred             -EEEeCEEEECcCCCcChH
Confidence             589999999999999864

>KOG0405|consensus

Probab=99.64  E-value=1.1e-15  Score=124.07  Aligned_cols=132  Identities=20%  Similarity=0.176  Sum_probs=98.9

Q ss_pred             CCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHHH
Q psy16200          9 DGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSA   88 (183)
Q Consensus         9 ~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~l   88 (183)
                      +....++||||+ +|..|.|| | .++ ++ ++..|+.                  ++..|+|++|+|||++|+|+|-.+
T Consensus       152 Ytak~iLIAtGg-~p~~PnIp-G-~E~-gi-dSDgff~------------------Lee~Pkr~vvvGaGYIavE~Agi~  208 (478)
T KOG0405|consen  152 YTAKHILIATGG-RPIIPNIP-G-AEL-GI-DSDGFFD------------------LEEQPKRVVVVGAGYIAVEFAGIF  208 (478)
T ss_pred             EecceEEEEeCC-ccCCCCCC-c-hhh-cc-ccccccc------------------hhhcCceEEEEccceEEEEhhhHH
Confidence            345789999998 58888999 5 554 22 4455553                  356889999999999999999999


Q ss_pred             HHcCCceEEEEEeecCCcCCCCHHHHH-----HHHHcCcEEEeCCcceEEEccCCc-EEEEEEEEeeecCCCCeecCCCc
Q psy16200         89 LRCGANKVLVVFRKGCTNIRAVPEEVQ-----LAWEEKCEFLPFMSPVQVDVKDNK-IAGMQFNRTEQNEKGEWVEDEEQ  162 (183)
Q Consensus        89 ~~~G~~~V~lv~r~~~~~~~~~~~~~~-----~~~~~gv~~~~~~~~~~i~~~~~~-v~~v~~~~~~~~~~~~~~~~~g~  162 (183)
                      +.+|+ +++|+.|.... +...++.+.     .+..+||++|.++.+.++...++. ...++.              .+ 
T Consensus       209 ~gLgs-ethlfiR~~kv-LR~FD~~i~~~v~~~~~~~ginvh~~s~~~~v~K~~~g~~~~i~~--------------~~-  271 (478)
T KOG0405|consen  209 AGLGS-ETHLFIRQEKV-LRGFDEMISDLVTEHLEGRGINVHKNSSVTKVIKTDDGLELVITS--------------HG-  271 (478)
T ss_pred             hhcCC-eeEEEEecchh-hcchhHHHHHHHHHHhhhcceeecccccceeeeecCCCceEEEEe--------------cc-
Confidence            99998 69999997653 555555543     457889999999999998764333 221221              22 


Q ss_pred             eEEE-ECCEEEEcccccccCC
Q psy16200        163 RIKL-KANYIISAFGSTLLDN  182 (183)
Q Consensus       163 ~~~i-~~D~Vi~a~G~~p~~~  182 (183)
                        ++ .+|+|+.|+|+.||+-
T Consensus       272 --~i~~vd~llwAiGR~Pntk  290 (478)
T KOG0405|consen  272 --TIEDVDTLLWAIGRKPNTK  290 (478)
T ss_pred             --ccccccEEEEEecCCCCcc
Confidence              34 4999999999999974

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=99.63  E-value=6.4e-15  Score=129.20  Aligned_cols=139  Identities=17%  Similarity=0.111  Sum_probs=94.7

Q ss_pred             CCCEEEEccCCCCCcccCCCCCCcc--CCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHH
Q psy16200         10 GYTAIFIGIGKPNANVIPIFQGLTE--EMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATS   87 (183)
Q Consensus        10 ~~davviATGa~~p~~l~i~gg~~~--~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~   87 (183)
                      .+|+||||||++ |+.|++| |..+  ..++++...                |+  .....+++|+|||||++|+|+|..
T Consensus       102 ~a~~lVlATGa~-p~~~~ip-G~~~~~~~~v~~~~~----------------~~--~~~~~g~~VvVIGgG~~g~E~A~~  161 (555)
T TIGR03143       102 KTLAVLIATGAS-PRKLGFP-GEEEFTGRGVAYCAT----------------CD--GEFFTGMDVFVIGGGFAAAEEAVF  161 (555)
T ss_pred             EEeEEEECCCCc-cCCCCCC-CHHHhCCceEEEEee----------------cC--hhhcCCCEEEEECCCHHHHHHHHH
Confidence            478999999995 8889999 5222  123332111                01  012345789999999999999999


Q ss_pred             HHHcCCceEEEEEeecCCcCCCCHHHHHHHH-HcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCceEEE
Q psy16200         88 ALRCGANKVLVVFRKGCTNIRAVPEEVQLAW-EEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKL  166 (183)
Q Consensus        88 l~~~G~~~V~lv~r~~~~~~~~~~~~~~~~~-~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i  166 (183)
                      |+++|. +|++++|++..  ........++. .+||++++++.+.++.+ ++.++.+.+...          .+|+..++
T Consensus       162 L~~~g~-~Vtli~~~~~~--~~~~~~~~~~~~~~gV~i~~~~~V~~i~~-~~~v~~v~~~~~----------~~G~~~~~  227 (555)
T TIGR03143       162 LTRYAS-KVTVIVREPDF--TCAKLIAEKVKNHPKIEVKFNTELKEATG-DDGLRYAKFVNN----------VTGEITEY  227 (555)
T ss_pred             HHccCC-EEEEEEeCCcc--ccCHHHHHHHHhCCCcEEEeCCEEEEEEc-CCcEEEEEEEEC----------CCCCEEEE
Confidence            999986 79999997642  22333333443 45999999999999975 345554444321          23444444


Q ss_pred             --ECCE----EEEcccccccCC
Q psy16200        167 --KANY----IISAFGSTLLDN  182 (183)
Q Consensus       167 --~~D~----Vi~a~G~~p~~~  182 (183)
                        +||.    ||+++|++||++
T Consensus       228 ~~~~D~~~~~Vi~a~G~~Pn~~  249 (555)
T TIGR03143       228 KAPKDAGTFGVFVFVGYAPSSE  249 (555)
T ss_pred             eccccccceEEEEEeCCCCChh
Confidence              4776    999999999974

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>KOG1336|consensus

Probab=99.61  E-value=1e-14  Score=122.41  Aligned_cols=141  Identities=16%  Similarity=0.221  Sum_probs=104.1

Q ss_pred             CCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHHHH
Q psy16200         10 GYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSAL   89 (183)
Q Consensus        10 ~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~l~   89 (183)
                      .|+.++||||+ .++.|++| | -+.+++.+-.+.-......            ......++|+++|+|++|+|+|..|.
T Consensus       169 kys~LilATGs-~~~~l~~p-G-~~~~nv~~ireieda~~l~------------~~~~~~~~vV~vG~G~ig~Evaa~l~  233 (478)
T KOG1336|consen  169 KYSKLIIATGS-SAKTLDIP-G-VELKNVFYLREIEDANRLV------------AAIQLGGKVVCVGGGFIGMEVAAALV  233 (478)
T ss_pred             ecceEEEeecC-ccccCCCC-C-ccccceeeeccHHHHHHHH------------HHhccCceEEEECchHHHHHHHHHHH
Confidence            68999999999 59999999 5 6788887644433222110            01223567999999999999999998


Q ss_pred             HcCCceEEEEEeecCCcCCC-CHH----HH-HHHHHcCcEEEeCCcceEEEc-cCCcEEEEEEEEeeecCCCCeecCCCc
Q psy16200         90 RCGANKVLVVFRKGCTNIRA-VPE----EV-QLAWEEKCEFLPFMSPVQVDV-KDNKIAGMQFNRTEQNEKGEWVEDEEQ  162 (183)
Q Consensus        90 ~~G~~~V~lv~r~~~~~~~~-~~~----~~-~~~~~~gv~~~~~~~~~~i~~-~~~~v~~v~~~~~~~~~~~~~~~~~g~  162 (183)
                      ..+ ++||+|++.+.. ++. ...    .+ .++++.||+|++++.+.++.+ .+++++.+.+.             ++ 
T Consensus       234 ~~~-~~VT~V~~e~~~-~~~lf~~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~-------------dg-  297 (478)
T KOG1336|consen  234 SKA-KSVTVVFPEPWL-LPRLFGPSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLK-------------DG-  297 (478)
T ss_pred             hcC-ceEEEEccCccc-hhhhhhHHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEec-------------cC-
Confidence            876 589999987653 442 222    22 245788999999999999986 34667655542             33 


Q ss_pred             eEEEECCEEEEcccccccCC
Q psy16200        163 RIKLKANYIISAFGSTLLDN  182 (183)
Q Consensus       163 ~~~i~~D~Vi~a~G~~p~~~  182 (183)
                       .+++||.|++.+|.+||+.
T Consensus       298 -~~l~adlvv~GiG~~p~t~  316 (478)
T KOG1336|consen  298 -KTLEADLVVVGIGIKPNTS  316 (478)
T ss_pred             -CEeccCeEEEeeccccccc
Confidence             4899999999999999985

>KOG4716|consensus

Probab=99.59  E-value=5.7e-15  Score=119.64  Aligned_cols=138  Identities=24%  Similarity=0.322  Sum_probs=103.5

Q ss_pred             CCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHHHH
Q psy16200         10 GYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSAL   89 (183)
Q Consensus        10 ~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~l~   89 (183)
                      ..+.+|||||. +||-|.|| | .- +.-+++.|++.                  ++..|+|-+|+|+|++|+|||-+|+
T Consensus       161 ta~~fvIatG~-RPrYp~Ip-G-~~-Ey~ITSDDlFs------------------l~~~PGkTLvVGa~YVaLECAgFL~  218 (503)
T KOG4716|consen  161 TAENFVIATGL-RPRYPDIP-G-AK-EYGITSDDLFS------------------LPYEPGKTLVVGAGYVALECAGFLK  218 (503)
T ss_pred             ecceEEEEecC-CCCCCCCC-C-ce-eeeeccccccc------------------ccCCCCceEEEccceeeeehhhhHh
Confidence            45789999998 59999999 5 22 23346677653                  3567789999999999999999999


Q ss_pred             HcCCceEEEEEeecCCcCCCCHHHHH-----HHHHcCcEEEeCCcceEEEc-cCCcEEEEEEEEeeecCCCCeecCCCce
Q psy16200         90 RCGANKVLVVFRKGCTNIRAVPEEVQ-----LAWEEKCEFLPFMSPVQVDV-KDNKIAGMQFNRTEQNEKGEWVEDEEQR  163 (183)
Q Consensus        90 ~~G~~~V~lv~r~~~~~~~~~~~~~~-----~~~~~gv~~~~~~~~~~i~~-~~~~v~~v~~~~~~~~~~~~~~~~~g~~  163 (183)
                      -+|- .|++..|+  ..+...+++|.     .+.+.||+|.....+.+++. +++++. +....+          .+++.
T Consensus       219 gfg~-~vtVmVRS--I~LrGFDqdmae~v~~~m~~~Gikf~~~~vp~~Veq~~~g~l~-v~~k~t----------~t~~~  284 (503)
T KOG4716|consen  219 GFGY-DVTVMVRS--ILLRGFDQDMAELVAEHMEERGIKFLRKTVPERVEQIDDGKLR-VFYKNT----------NTGEE  284 (503)
T ss_pred             hcCC-CcEEEEEE--eecccccHHHHHHHHHHHHHhCCceeecccceeeeeccCCcEE-EEeecc----------ccccc
Confidence            9997 69999997  44666666553     45789999999999998876 455543 434321          23333


Q ss_pred             EEEECCEEEEcccccccCCC
Q psy16200        164 IKLKANYIISAFGSTLLDND  183 (183)
Q Consensus       164 ~~i~~D~Vi~a~G~~p~~~~  183 (183)
                      .+-+.|+|++|+|+.+++.+
T Consensus       285 ~~~~ydTVl~AiGR~~~~~~  304 (503)
T KOG4716|consen  285 GEEEYDTVLWAIGRKALTDD  304 (503)
T ss_pred             ccchhhhhhhhhccccchhh
Confidence            44578999999999998753

>KOG1800|consensus

Probab=99.58  E-value=1.6e-14  Score=118.40  Aligned_cols=169  Identities=18%  Similarity=0.246  Sum_probs=111.5

Q ss_pred             CChhhhhhCCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChh
Q psy16200          1 MPTLKLRKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDT   80 (183)
Q Consensus         1 ~~~~~l~~~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~   80 (183)
                      +++.+|++. ||+||+|+|+..+|.|.|| | +++.||+++..|..+++......    ..  .+.....+|+|||-|++
T Consensus       100 vsl~eL~~~-ydavvLaYGa~~dR~L~IP-G-e~l~~V~Sarefv~Wyng~P~~~----~l--e~dls~~~vvIvG~GNV  170 (468)
T KOG1800|consen  100 VSLKELTDN-YDAVVLAYGADGDRRLDIP-G-EELSGVISAREFVGWYNGLPENQ----NL--EPDLSGRKVVIVGNGNV  170 (468)
T ss_pred             ccHHHHhhc-ccEEEEEecCCCCcccCCC-C-cccccceehhhhhhhccCCCccc----cc--CcccccceEEEEccCch
Confidence            467788775 9999999999889999999 4 78999999999998876421100    00  11223456999999999


Q ss_pred             HHHHHHHHHH---------------------cCCceEEEEEeecCCcCCCCHH---------------------------
Q psy16200         81 AFDCATSALR---------------------CGANKVLVVFRKGCTNIRAVPE---------------------------  112 (183)
Q Consensus        81 g~e~A~~l~~---------------------~G~~~V~lv~r~~~~~~~~~~~---------------------------  112 (183)
                      |+|+|+.|..                     ...++|+|+.||+..+....-.                           
T Consensus       171 AlDvARiLls~~~~l~~~TDi~~~aL~~L~~s~VkdV~lvgRRgp~~~aFTiKELRE~~~l~~~~~r~~~~~~~~~~~~~  250 (468)
T KOG1800|consen  171 ALDVARILLSPQGPLFRRTDIPKLALNLLKRSNVKDVKLVGRRGPLQVAFTIKELREVLELPGARPRLDPVDFSGKWMDE  250 (468)
T ss_pred             hhhhhhhhhCCccccccccCCcHHHHhhhhcCCcceEEEEeccCccceeeeHHHHHHHhCCCCcccccCchhccceeCCc
Confidence            9999998862                     1347899999976422111100                           


Q ss_pred             ----------HH-----HHHHH--------c-C---cEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCceEE
Q psy16200        113 ----------EV-----QLAWE--------E-K---CEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIK  165 (183)
Q Consensus       113 ----------~~-----~~~~~--------~-g---v~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~  165 (183)
                                ++     ..+.+        . +   -.+.+...+.+|....+.+.++.++.+.+...  ....+|+.++
T Consensus       251 ~~~~~~RpRkrl~ell~k~~~e~~~~~~~~~~~~k~w~~~f~r~P~~i~~~~~~v~~~~~~~t~l~~~--~~~~tg~~e~  328 (468)
T KOG1800|consen  251 SETPQHRPRKRLTELLLKWAREHRAKASEEAGGSKQWHLRFFRTPGAILPGADGVSGVRFQVTILEGT--QAVPTGAFET  328 (468)
T ss_pred             ccccccCchhHHHHHHHHHHHhhhhccccccCccchhHHHHhcCHHHhccCcccccceEEEeeeehhh--cccccCceEe
Confidence                      00     01111        0 1   13445566667765434466666665444221  1235788899


Q ss_pred             EECCEEEEccccccc
Q psy16200        166 LKANYIISAFGSTLL  180 (183)
Q Consensus       166 i~~D~Vi~a~G~~p~  180 (183)
                      ++|+.++.++||...
T Consensus       329 ~p~~l~i~sIGYks~  343 (468)
T KOG1800|consen  329 LPCGLLIRSIGYKSV  343 (468)
T ss_pred             eccceeEeeeeeccc
Confidence            999999999999754

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=99.56  E-value=4e-14  Score=115.16  Aligned_cols=140  Identities=13%  Similarity=0.170  Sum_probs=105.1

Q ss_pred             CCCEEEEccCCCCCcccCCCCCCccC--CCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHH
Q psy16200         10 GYTAIFIGIGKPNANVIPIFQGLTEE--MGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATS   87 (183)
Q Consensus        10 ~~davviATGa~~p~~l~i~gg~~~~--~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~   87 (183)
                      ..+.||||||++ -|.+.+| |..++  +||-                ||--|++  +..-+|+|+|||||++|+|+|.-
T Consensus       313 kaktvIlstGAr-WRn~nvP-GE~e~rnKGVa----------------yCPHCDG--PLF~gK~VAVIGGGNSGvEAAID  372 (520)
T COG3634         313 KARTVILATGAR-WRNMNVP-GEDEYRNKGVA----------------YCPHCDG--PLFKGKRVAVIGGGNSGVEAAID  372 (520)
T ss_pred             ccceEEEecCcc-hhcCCCC-chHHHhhCCee----------------eCCCCCC--cccCCceEEEECCCcchHHHHHh
Confidence            468999999994 6889999 52332  2332                5666775  23345669999999999999999


Q ss_pred             HHHcCCceEEEEEeecCCcCCCCHHHHHHH-HHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCceEEE
Q psy16200         88 ALRCGANKVLVVFRKGCTNIRAVPEEVQLA-WEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKL  166 (183)
Q Consensus        88 l~~~G~~~V~lv~r~~~~~~~~~~~~~~~~-~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i  166 (183)
                      |+-. .++||+++=.+  ++.+..-..+++ .-.+++++++...+++.+++++|++++++..          .+|+.+.+
T Consensus       373 LAGi-v~hVtllEF~~--eLkAD~VLq~kl~sl~Nv~ii~na~Ttei~Gdg~kV~Gl~Y~dr----------~sge~~~l  439 (520)
T COG3634         373 LAGI-VEHVTLLEFAP--ELKADAVLQDKLRSLPNVTIITNAQTTEVKGDGDKVTGLEYRDR----------VSGEEHHL  439 (520)
T ss_pred             HHhh-hheeeeeecch--hhhhHHHHHHHHhcCCCcEEEecceeeEEecCCceecceEEEec----------cCCceeEE
Confidence            9988 46999996432  133322122233 3467999999999999998889999998653          46788899


Q ss_pred             ECCEEEEcccccccCC
Q psy16200        167 KANYIISAFGSTLLDN  182 (183)
Q Consensus       167 ~~D~Vi~a~G~~p~~~  182 (183)
                      +.+-|++-+|..||++
T Consensus       440 ~LeGvFVqIGL~PNT~  455 (520)
T COG3634         440 ELEGVFVQIGLLPNTE  455 (520)
T ss_pred             EeeeeEEEEecccChh
Confidence            9999999999999986

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=99.54  E-value=1.8e-14  Score=126.22  Aligned_cols=142  Identities=18%  Similarity=0.247  Sum_probs=102.9

Q ss_pred             hCCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHH
Q psy16200          8 KDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATS   87 (183)
Q Consensus         8 ~~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~   87 (183)
                      ...||.+|+|||| .|..+|+| | .+.++|+.-.++-......            ......++.+|||||..|+|+|..
T Consensus        99 ~~~YDkLilATGS-~pfi~PiP-G-~~~~~v~~~R~i~D~~am~------------~~ar~~~~avVIGGGLLGlEaA~~  163 (793)
T COG1251          99 TVSYDKLIIATGS-YPFILPIP-G-SDLPGVFVYRTIDDVEAML------------DCARNKKKAVVIGGGLLGLEAARG  163 (793)
T ss_pred             EeecceeEEecCc-cccccCCC-C-CCCCCeeEEecHHHHHHHH------------HHHhccCCcEEEccchhhhHHHHH
Confidence            3469999999999 59999999 5 8888876533332211110            011233458999999999999999


Q ss_pred             HHHcCCceEEEEEeecCCcCCCC-H----HHH-HHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCC
Q psy16200         88 ALRCGANKVLVVFRKGCTNIRAV-P----EEV-QLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEE  161 (183)
Q Consensus        88 l~~~G~~~V~lv~r~~~~~~~~~-~----~~~-~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g  161 (183)
                      |...|. +|++++..+.. |-+. +    +.+ ..+.++|+.|+++....++.+ ++++.++++.             +|
T Consensus       164 L~~~Gm-~~~Vvh~~~~l-MerQLD~~ag~lL~~~le~~Gi~~~l~~~t~ei~g-~~~~~~vr~~-------------DG  227 (793)
T COG1251         164 LKDLGM-EVTVVHIAPTL-MERQLDRTAGRLLRRKLEDLGIKVLLEKNTEEIVG-EDKVEGVRFA-------------DG  227 (793)
T ss_pred             HHhCCC-ceEEEeecchH-HHHhhhhHHHHHHHHHHHhhcceeecccchhhhhc-CcceeeEeec-------------CC
Confidence            999998 69999987653 3222 1    112 245788999999888888875 5667777763             33


Q ss_pred             ceEEEECCEEEEcccccccCC
Q psy16200        162 QRIKLKANYIISAFGSTLLDN  182 (183)
Q Consensus       162 ~~~~i~~D~Vi~a~G~~p~~~  182 (183)
                      .  .+++|.||+|+|.+||++
T Consensus       228 ~--~i~ad~VV~a~GIrPn~e  246 (793)
T COG1251         228 T--EIPADLVVMAVGIRPNDE  246 (793)
T ss_pred             C--cccceeEEEecccccccH
Confidence            3  689999999999999975

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=99.48  E-value=2.3e-13  Score=116.93  Aligned_cols=130  Identities=15%  Similarity=0.140  Sum_probs=83.7

Q ss_pred             CCCCEEEEccCCC-CCcccCCCCCCccCCC-ceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHH
Q psy16200          9 DGYTAIFIGIGKP-NANVIPIFQGLTEEMG-FYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCAT   86 (183)
Q Consensus         9 ~~~davviATGa~-~p~~l~i~gg~~~~~~-V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~   86 (183)
                      +.||+||||||.. .|+.|++| |+.+++| ++++.+|-.                 ....-+++|+|||+|++|+|+|.
T Consensus       160 ~~~d~VIvAtG~~~~P~~P~ip-G~~~f~G~~iHs~~yr~-----------------~~~~~gk~VvVVG~G~Sg~diA~  221 (461)
T PLN02172        160 EIFDAVVVCNGHYTEPNVAHIP-GIKSWPGKQIHSHNYRV-----------------PDPFKNEVVVVIGNFASGADISR  221 (461)
T ss_pred             EEcCEEEEeccCCCCCcCCCCC-CcccCCceEEEecccCC-----------------ccccCCCEEEEECCCcCHHHHHH
Confidence            3589999999942 58888999 6556666 233332211                 01223466999999999999999


Q ss_pred             HHHHcCCceEEEEEeecCCcCCCCHHHHHHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCceEEE
Q psy16200         87 SALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKL  166 (183)
Q Consensus        87 ~l~~~G~~~V~lv~r~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i  166 (183)
                      .|++.+ ++|++++|++.. ..     ...+......+..+..+..+.. ++.   |++             .+|+  .+
T Consensus       222 ~L~~~a-~~V~l~~r~~~~-~~-----~~~~~~~~~~v~~~~~I~~~~~-~g~---V~f-------------~DG~--~~  275 (461)
T PLN02172        222 DIAKVA-KEVHIASRASES-DT-----YEKLPVPQNNLWMHSEIDTAHE-DGS---IVF-------------KNGK--VV  275 (461)
T ss_pred             HHHHhC-CeEEEEEeeccc-cc-----cccCcCCCCceEECCcccceec-CCe---EEE-------------CCCC--Cc
Confidence            999986 589999997532 11     0111112233444555555442 332   334             3454  46


Q ss_pred             ECCEEEEcccccccCC
Q psy16200        167 KANYIISAFGSTLLDN  182 (183)
Q Consensus       167 ~~D~Vi~a~G~~p~~~  182 (183)
                      ++|.||+|+|+.|+.+
T Consensus       276 ~~D~Ii~~TGy~~~~p  291 (461)
T PLN02172        276 YADTIVHCTGYKYHFP  291 (461)
T ss_pred             cCCEEEECCcCCcccc
Confidence            8999999999999754

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=99.47  E-value=5e-13  Score=113.73  Aligned_cols=147  Identities=12%  Similarity=0.106  Sum_probs=90.7

Q ss_pred             hCCCCEEEEccCCCCCcccCCCCCCccCCCcee------hhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhH
Q psy16200          8 KDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYT------SKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTA   81 (183)
Q Consensus         8 ~~~~davviATGa~~p~~l~i~gg~~~~~~V~~------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g   81 (183)
                      +..||.+|||||+. |+.+++| |..+  ++++      +..+......+........+.. ......++|+|||||.+|
T Consensus       111 ~i~yD~LViAtGs~-~~~~~ip-G~~e--~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~vvVvGgG~~G  185 (424)
T PTZ00318        111 SVPYDKLVVAHGAR-PNTFNIP-GVEE--RAFFLKEVNHARGIRKRIVQCIERASLPTTSV-EERKRLLHFVVVGGGPTG  185 (424)
T ss_pred             EecCCEEEECCCcc-cCCCCCC-CHHH--cCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCh-HHHhccCEEEEECCCHHH
Confidence            45799999999994 8888899 5332  2222      1111111111000000000000 000011379999999999


Q ss_pred             HHHHHHHHHc--------------CCceEEEEEeecCCcCCCCHHHH-----HHHHHcCcEEEeCCcceEEEccCCcEEE
Q psy16200         82 FDCATSALRC--------------GANKVLVVFRKGCTNIRAVPEEV-----QLAWEEKCEFLPFMSPVQVDVKDNKIAG  142 (183)
Q Consensus        82 ~e~A~~l~~~--------------G~~~V~lv~r~~~~~~~~~~~~~-----~~~~~~gv~~~~~~~~~~i~~~~~~v~~  142 (183)
                      +|+|..|+..              +. +|++++++++. ++..++.+     +.+.+.||+++++..+.++..  +.   
T Consensus       186 vE~A~~l~~~~~~~~~~~~~~~~~~~-~Vtlv~~~~~l-l~~~~~~~~~~~~~~L~~~gV~v~~~~~v~~v~~--~~---  258 (424)
T PTZ00318        186 VEFAAELADFFRDDVRNLNPELVEEC-KVTVLEAGSEV-LGSFDQALRKYGQRRLRRLGVDIRTKTAVKEVLD--KE---  258 (424)
T ss_pred             HHHHHHHHHHHHHHHHhhhhcccccC-EEEEEcCCCcc-cccCCHHHHHHHHHHHHHCCCEEEeCCeEEEEeC--CE---
Confidence            9999988752              54 79999987654 44443332     346789999999999988863  22   


Q ss_pred             EEEEEeeecCCCCeecCCCceEEEECCEEEEcccccccC
Q psy16200        143 MQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLD  181 (183)
Q Consensus       143 v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~  181 (183)
                      +.+             .+|+  ++++|+||+++|.+||.
T Consensus       259 v~~-------------~~g~--~i~~d~vi~~~G~~~~~  282 (424)
T PTZ00318        259 VVL-------------KDGE--VIPTGLVVWSTGVGPGP  282 (424)
T ss_pred             EEE-------------CCCC--EEEccEEEEccCCCCcc
Confidence            223             2333  78999999999999973

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=99.44  E-value=3.3e-12  Score=106.28  Aligned_cols=137  Identities=16%  Similarity=0.186  Sum_probs=87.5

Q ss_pred             hCCCCEEEEccCCCCCcccCCCCCCccCCCceeh---hhhHH---HHhccccCCccCCCCCCCCCCCcceEEEEcCChhH
Q psy16200          8 KDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTS---KTFLP---RVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTA   81 (183)
Q Consensus         8 ~~~~davviATGa~~p~~l~i~gg~~~~~~V~~~---~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g   81 (183)
                      +..||.+|||||+. |+.+++| | . .++++..   .++..   ......           ....-.++|+|||||++|
T Consensus        93 ~~~yD~LviAtG~~-~~~~~i~-g-~-~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~vvVvG~G~~g  157 (364)
T TIGR03169        93 PLSYDVLSLDVGST-TPLSGVE-G-A-ADLAVPVKPIENFLARWEALLESA-----------DAPPGTKRLAVVGGGAAG  157 (364)
T ss_pred             cccccEEEEccCCC-CCCCCCC-c-c-cccccccCCHHHHHHHHHHHHHHH-----------hcCCCCceEEEECCCHHH
Confidence            35799999999994 8888899 4 2 2333321   12221   111100           001123579999999999


Q ss_pred             HHHHHHHHHc----CC-ceEEEEEeecCCcCCCCHHH-----HHHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeec
Q psy16200         82 FDCATSALRC----GA-NKVLVVFRKGCTNIRAVPEE-----VQLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQN  151 (183)
Q Consensus        82 ~e~A~~l~~~----G~-~~V~lv~r~~~~~~~~~~~~-----~~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~  151 (183)
                      +|+|..|++.    |. .+|+++ +.+.. ++..+..     .+.+.+.||++++++.+.++..  +.   +.+      
T Consensus       158 ~E~A~~l~~~~~~~g~~~~V~li-~~~~~-l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~--~~---v~~------  224 (364)
T TIGR03169       158 VEIALALRRRLPKRGLRGQVTLI-AGASL-LPGFPAKVRRLVLRLLARRGIEVHEGAPVTRGPD--GA---LIL------  224 (364)
T ss_pred             HHHHHHHHHHHHhcCCCceEEEE-eCCcc-cccCCHHHHHHHHHHHHHCCCEEEeCCeeEEEcC--Ce---EEe------
Confidence            9999988753    32 269999 44332 3333222     2346788999999999888853  22   333      


Q ss_pred             CCCCeecCCCceEEEECCEEEEcccccccC
Q psy16200        152 EKGEWVEDEEQRIKLKANYIISAFGSTLLD  181 (183)
Q Consensus       152 ~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~  181 (183)
                             .+|  .++++|.||+|+|.+|++
T Consensus       225 -------~~g--~~i~~D~vi~a~G~~p~~  245 (364)
T TIGR03169       225 -------ADG--RTLPADAILWATGARAPP  245 (364)
T ss_pred             -------CCC--CEEecCEEEEccCCChhh
Confidence                   123  378999999999999974

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=99.43  E-value=1.2e-12  Score=109.94  Aligned_cols=145  Identities=17%  Similarity=0.179  Sum_probs=95.1

Q ss_pred             hhCCCCEEEEccCCCCCcccCCCCCCccCC-CceehhhhHH---HHhccc-cCCccCCCCCCCCCCC-c-ceEEEEcCCh
Q psy16200          7 RKDGYTAIFIGIGKPNANVIPIFQGLTEEM-GFYTSKTFLP---RVATSS-KKGLCGGCKKESLPIL-K-GTVIVLGAGD   79 (183)
Q Consensus         7 ~~~~~davviATGa~~p~~l~i~gg~~~~~-~V~~~~~~l~---~~~~~~-~~~~~~~~~~~~~~~~-~-~~VvViGgG~   79 (183)
                      .+..||.+|||+||. +....+| |..++. .+.+..+.++   ...... +.      .  ..... . -.++|+|||+
T Consensus        96 ~~i~YD~LVvalGs~-~~~fgi~-G~~E~a~~lks~edA~~ir~~l~~~fe~a------~--~~~~~~~~lti~IvGgG~  165 (405)
T COG1252          96 GEISYDYLVVALGSE-TNYFGIP-GAAEYAFGLKTLEDALRLRRHLLEAFEKA------S--QEEDDRALLTIVIVGGGP  165 (405)
T ss_pred             ccccccEEEEecCCc-CCcCCCC-CHHHhCCCCCCHHHHHHHHHHHHHHHHHh------h--ccccccceeEEEEECCCh
Confidence            345899999999994 7888899 544432 2333333322   221100 00      0  01111 1 2499999999


Q ss_pred             hHHHHHHHHHHcCC----c--------eEEEEEeecCCcCCCCHHHH-----HHHHHcCcEEEeCCcceEEEccCCcEEE
Q psy16200         80 TAFDCATSALRCGA----N--------KVLVVFRKGCTNIRAVPEEV-----QLAWEEKCEFLPFMSPVQVDVKDNKIAG  142 (183)
Q Consensus        80 ~g~e~A~~l~~~G~----~--------~V~lv~r~~~~~~~~~~~~~-----~~~~~~gv~~~~~~~~~~i~~~~~~v~~  142 (183)
                      +|+|+|..|+++-.    +        +|+||++.++. +|..++.+     +.+++.||++++++.++++..  +.|  
T Consensus       166 TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~I-Lp~~~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~--~~v--  240 (405)
T COG1252         166 TGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRI-LPMFPPKLSKYAERALEKLGVEVLLGTPVTEVTP--DGV--  240 (405)
T ss_pred             hHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchh-ccCCCHHHHHHHHHHHHHCCCEEEcCCceEEECC--CcE--
Confidence            99999988775411    1        79999999875 66665443     245789999999999999974  333  


Q ss_pred             EEEEEeeecCCCCeecCCCceEEEECCEEEEcccccccC
Q psy16200        143 MQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLD  181 (183)
Q Consensus       143 v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~  181 (183)
                       ++.             ++.+ +|+||++|.|.|.++++
T Consensus       241 -~~~-------------~g~~-~I~~~tvvWaaGv~a~~  264 (405)
T COG1252         241 -TLK-------------DGEE-EIPADTVVWAAGVRASP  264 (405)
T ss_pred             -EEc-------------cCCe-eEecCEEEEcCCCcCCh
Confidence             332             2222 79999999999999875

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=99.37  E-value=8.8e-12  Score=82.10  Aligned_cols=73  Identities=12%  Similarity=0.226  Sum_probs=59.4

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCCcCCCCHHHH-----HHHHHcCcEEEeCCcceEEEccCCcEEEEEE
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEV-----QLAWEEKCEFLPFMSPVQVDVKDNKIAGMQF  145 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~~~~~~~~~~-----~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~  145 (183)
                      ||+|||||++|+|+|..|+++|. +|++++|++.. ++..++++     +++.+.||++++++.+.++..+++.++ |++
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~-~vtli~~~~~~-~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~-V~~   77 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGK-EVTLIERSDRL-LPGFDPDAAKILEEYLRKRGVEVHTNTKVKEIEKDGDGVE-VTL   77 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTS-EEEEEESSSSS-STTSSHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTSEE-EEE
T ss_pred             CEEEECcCHHHHHHHHHHHHhCc-EEEEEeccchh-hhhcCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCEEE-EEE
Confidence            58999999999999999999996 79999999875 45554433     346788999999999999987555566 666


Q ss_pred             E
Q psy16200        146 N  146 (183)
Q Consensus       146 ~  146 (183)
                      .
T Consensus        78 ~   78 (80)
T PF00070_consen   78 E   78 (80)
T ss_dssp             E
T ss_pred             e
Confidence            3

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=99.36  E-value=8.5e-12  Score=103.43  Aligned_cols=141  Identities=18%  Similarity=0.265  Sum_probs=80.4

Q ss_pred             CCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHHHH
Q psy16200         10 GYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSAL   89 (183)
Q Consensus        10 ~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~l~   89 (183)
                      ..+.||||||. .|..|.....+...+.|+++.+++.....               ....++|+|||||.+|.|++..|.
T Consensus       147 ~ar~vVla~G~-~P~iP~~~~~~~~~~~v~Hss~~~~~~~~---------------~~~~~~V~VVGgGQSAAEi~~~L~  210 (341)
T PF13434_consen  147 RARNVVLATGG-QPRIPEWFQDLPGSPRVFHSSEYLSRIDQ---------------SLAGKRVAVVGGGQSAAEIFLDLL  210 (341)
T ss_dssp             EESEEEE-----EE---GGGGGGTT-TTEEEGGGHHHHHT--------------------EEEEEE-SSHHHHHHHHHHH
T ss_pred             EeCeEEECcCC-CCCCCcchhhcCCCCCEEEehHhhhcccc---------------ccCCCeEEEECCcHhHHHHHHHHH
Confidence            46899999996 57766543121113679999999876521               234467999999999999999999


Q ss_pred             HcCC-ceEEEEEeecCCcCCCC----------HH-------------------------------HHH----HH------
Q psy16200         90 RCGA-NKVLVVFRKGCTNIRAV----------PE-------------------------------EVQ----LA------  117 (183)
Q Consensus        90 ~~G~-~~V~lv~r~~~~~~~~~----------~~-------------------------------~~~----~~------  117 (183)
                      +.+. .+|+++.|+... .+..          ++                               .++    .+      
T Consensus       211 ~~~~~~~V~~i~R~~~~-~~~d~s~f~ne~f~P~~v~~f~~l~~~~R~~~l~~~~~~ny~~i~~~~l~~iy~~lY~~~v~  289 (341)
T PF13434_consen  211 RRGPEAKVTWISRSPGF-FPMDDSPFVNEIFSPEYVDYFYSLPDEERRELLREQRHTNYGGIDPDLLEAIYDRLYEQRVS  289 (341)
T ss_dssp             HH-TTEEEEEEESSSS--EB----CCHHGGGSHHHHHHHHTS-HHHHHHHHHHTGGGTSSEB-HHHHHHHHHHHHHHHHH
T ss_pred             hCCCCcEEEEEECCCcc-CCCccccchhhhcCchhhhhhhcCCHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHHhc
Confidence            8874 479999997642 1111          11                               000    00      


Q ss_pred             HHcCcEEEeCCcceEEEccC-CcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEccccc
Q psy16200        118 WEEKCEFLPFMSPVQVDVKD-NKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGST  178 (183)
Q Consensus       118 ~~~gv~~~~~~~~~~i~~~~-~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~  178 (183)
                      .+..+.++.++.+.++...+ +.+. +++...          .+++..++++|.||+|+||+
T Consensus       290 g~~~~~l~~~~~v~~~~~~~~~~~~-l~~~~~----------~~~~~~~~~~D~VilATGy~  340 (341)
T PF13434_consen  290 GRGRLRLLPNTEVTSAEQDGDGGVR-LTLRHR----------QTGEEETLEVDAVILATGYR  340 (341)
T ss_dssp             T---SEEETTEEEEEEEEES-SSEE-EEEEET----------TT--EEEEEESEEEE---EE
T ss_pred             CCCCeEEeCCCEEEEEEECCCCEEE-EEEEEC----------CCCCeEEEecCEEEEcCCcc
Confidence            01236788888888887644 4554 556431          45678899999999999985

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=99.28  E-value=8.8e-11  Score=98.24  Aligned_cols=142  Identities=22%  Similarity=0.177  Sum_probs=93.9

Q ss_pred             hCCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHH
Q psy16200          8 KDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATS   87 (183)
Q Consensus         8 ~~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~   87 (183)
                      +..||.+++|||++ |+.++  +  ....++++....-.....  +          ......++|+|+|+|.+|+++|..
T Consensus        92 ~~~yd~LvlatGa~-~~~~~--~--~~~~~~~~~~~~~~~~~~--~----------~~~~~~~~v~vvG~G~~gle~A~~  154 (415)
T COG0446          92 EIEYDYLVLATGAR-PRPPP--I--SDWEGVVTLRLREDAEAL--K----------GGAEPPKDVVVVGAGPIGLEAAEA  154 (415)
T ss_pred             cccccEEEEcCCCc-ccCCC--c--cccCceEEECCHHHHHHH--H----------HHHhccCeEEEECCcHHHHHHHHH
Confidence            34699999999995 77665  2  334445443322211111  0          001124679999999999999999


Q ss_pred             HHHcCCceEEEEEeecCCcCCCC--H---HHH-HHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCC
Q psy16200         88 ALRCGANKVLVVFRKGCTNIRAV--P---EEV-QLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEE  161 (183)
Q Consensus        88 l~~~G~~~V~lv~r~~~~~~~~~--~---~~~-~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g  161 (183)
                      |.++|. +|+++++.++. ++..  .   ..+ ..+.+.||+++++..+.++....+.+.....             ...
T Consensus       155 ~~~~G~-~v~l~e~~~~~-~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~-------------~~~  219 (415)
T COG0446         155 AAKRGK-KVTLIEAADRL-GGQLLDPEVAEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERV-------------VGI  219 (415)
T ss_pred             HHHcCC-eEEEEEccccc-chhhhhHHHHHHHHHHHHHCCcEEEeCCceEEEEcccCcceeeEE-------------EEe
Confidence            999996 79999988764 3332  1   122 3457789999999999999864443321101             012


Q ss_pred             ceEEEECCEEEEcccccccC
Q psy16200        162 QRIKLKANYIISAFGSTLLD  181 (183)
Q Consensus       162 ~~~~i~~D~Vi~a~G~~p~~  181 (183)
                      ....+++|.+++++|.+||+
T Consensus       220 ~~~~~~~d~~~~~~g~~p~~  239 (415)
T COG0446         220 DGEEIKADLVIIGPGERPNV  239 (415)
T ss_pred             CCcEEEeeEEEEeecccccH
Confidence            33478999999999999974

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=99.23  E-value=3.7e-11  Score=104.85  Aligned_cols=82  Identities=24%  Similarity=0.381  Sum_probs=52.3

Q ss_pred             CCCCEEEEccCCC-CCcccC--CCCCCccCCC-ceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHH
Q psy16200          9 DGYTAIFIGIGKP-NANVIP--IFQGLTEEMG-FYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDC   84 (183)
Q Consensus         9 ~~~davviATGa~-~p~~l~--i~gg~~~~~~-V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~   84 (183)
                      +.||+||||||.. .|+.|.  +| |++.++| ++++.+|-..                 ...-+|||+|||+|.+|+|+
T Consensus       137 ~~fD~VvvatG~~~~P~~P~~~~~-G~e~F~G~i~HS~~yr~~-----------------~~f~gKrVlVVG~g~Sg~DI  198 (531)
T PF00743_consen  137 EEFDAVVVATGHFSKPNIPEPSFP-GLEKFKGEIIHSKDYRDP-----------------EPFKGKRVLVVGGGNSGADI  198 (531)
T ss_dssp             EEECEEEEEE-SSSCESB-----C-TGGGHCSEEEEGGG--TG-----------------GGGTTSEEEEESSSHHHHHH
T ss_pred             EEeCeEEEcCCCcCCCCCChhhhh-hhhcCCeeEEccccCcCh-----------------hhcCCCEEEEEeCCHhHHHH
Confidence            3599999999974 466553  78 6666666 6666665321                 12235679999999999999


Q ss_pred             HHHHHHcCCceEEEEEeecCCcCCC
Q psy16200         85 ATSALRCGANKVLVVFRKGCTNIRA  109 (183)
Q Consensus        85 A~~l~~~G~~~V~lv~r~~~~~~~~  109 (183)
                      |..+++.. ++|++..|++...+|.
T Consensus       199 a~el~~~a-~~v~~s~R~~~wv~pr  222 (531)
T PF00743_consen  199 AVELSRVA-KKVYLSTRRGAWVLPR  222 (531)
T ss_dssp             HHHHTTTS-CCEEEECC--------
T ss_pred             HHHHHHhc-CCeEEEEecccccccc
Confidence            99999984 6899999987654443

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>KOG1346|consensus

Probab=99.16  E-value=2.1e-10  Score=95.64  Aligned_cols=140  Identities=16%  Similarity=0.212  Sum_probs=91.0

Q ss_pred             hCCCCEEEEccCCCCCcccCCCCCCccCC----C---ceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChh
Q psy16200          8 KDGYTAIFIGIGKPNANVIPIFQGLTEEM----G---FYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDT   80 (183)
Q Consensus         8 ~~~~davviATGa~~p~~l~i~gg~~~~~----~---V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~   80 (183)
                      ..+||.++||||. +|+.+++..  +..+    .   ..+..||-+..+.               ..-.++|.|||+|+.
T Consensus       297 ~I~YdkcLIATG~-~Pk~l~~~~--~A~~evk~kit~fr~p~DF~rlek~---------------~aek~siTIiGnGfl  358 (659)
T KOG1346|consen  297 TIGYDKCLIATGV-RPKKLQVFE--EASEEVKQKITYFRYPADFKRLEKG---------------LAEKQSITIIGNGFL  358 (659)
T ss_pred             EeehhheeeecCc-Ccccchhhh--hcCHHhhhheeEEecchHHHHHHHh---------------hhhcceEEEEcCcch
Confidence            3479999999998 599888642  2111    1   1223344332211               011145999999999


Q ss_pred             HHHHHHHHHH----cCCceEEEEEeecCC---cCCCC--HHHHHHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeec
Q psy16200         81 AFDCATSALR----CGANKVLVVFRKGCT---NIRAV--PEEVQLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQN  151 (183)
Q Consensus        81 g~e~A~~l~~----~G~~~V~lv~r~~~~---~~~~~--~~~~~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~  151 (183)
                      |.|+|..|.+    .|. +|+.+......   .+|..  ...++...+.||.++.+..+.++......+. +++      
T Consensus       359 gSELacsl~rk~r~~g~-eV~QvF~Ek~nm~kiLPeyls~wt~ekir~~GV~V~pna~v~sv~~~~~nl~-lkL------  430 (659)
T KOG1346|consen  359 GSELACSLKRKYRNEGV-EVHQVFEEKYNMEKILPEYLSQWTIEKIRKGGVDVRPNAKVESVRKCCKNLV-LKL------  430 (659)
T ss_pred             hhhHHHHHHHhhhccCc-EEEEeecccCChhhhhHHHHHHHHHHHHHhcCceeccchhhhhhhhhccceE-EEe------
Confidence            9999998875    355 58888765432   11211  2234566789999999999887754333332 333      


Q ss_pred             CCCCeecCCCceEEEECCEEEEcccccccCC
Q psy16200        152 EKGEWVEDEEQRIKLKANYIISAFGSTLLDN  182 (183)
Q Consensus       152 ~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~  182 (183)
                             .+|  .++..|.||+|+|-.||++
T Consensus       431 -------~dG--~~l~tD~vVvavG~ePN~e  452 (659)
T KOG1346|consen  431 -------SDG--SELRTDLVVVAVGEEPNSE  452 (659)
T ss_pred             -------cCC--CeeeeeeEEEEecCCCchh
Confidence                   233  3789999999999999986

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=99.00  E-value=5.6e-10  Score=85.23  Aligned_cols=75  Identities=20%  Similarity=0.250  Sum_probs=46.0

Q ss_pred             CCCEEEEccCCC-CCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHHH
Q psy16200         10 GYTAIFIGIGKP-NANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSA   88 (183)
Q Consensus        10 ~~davviATGa~-~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~l   88 (183)
                      .+|.||+|||.. .|+.|++| | .....++++.++...                 ....+++|+|||+|.+|+|+|..|
T Consensus       126 ~a~~VVlAtG~~~~p~~p~~~-g-~~~~~~~h~~~~~~~-----------------~~~~~k~V~VVG~G~SA~d~a~~l  186 (203)
T PF13738_consen  126 RADRVVLATGHYSHPRIPDIP-G-SAFRPIIHSADWRDP-----------------EDFKGKRVVVVGGGNSAVDIAYAL  186 (203)
T ss_dssp             EEEEEEE---SSCSB---S-T-T-GGCSEEEEGGG-STT-----------------GGCTTSEEEEE--SHHHHHHHHHH
T ss_pred             eeeeEEEeeeccCCCCccccc-c-ccccceEehhhcCCh-----------------hhcCCCcEEEEcChHHHHHHHHHH
Confidence            479999999963 58888888 4 333345555554321                 122346799999999999999999


Q ss_pred             HHcCCceEEEEEeecC
Q psy16200         89 LRCGANKVLVVFRKGC  104 (183)
Q Consensus        89 ~~~G~~~V~lv~r~~~  104 (183)
                      ++.| ++|+++.|++.
T Consensus       187 ~~~g-~~V~~~~R~~~  201 (203)
T PF13738_consen  187 AKAG-KSVTLVTRSPI  201 (203)
T ss_dssp             TTTC-SEEEEEESS--
T ss_pred             HhhC-CEEEEEecCCC
Confidence            9998 58999999853

...

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=98.93  E-value=3.1e-09  Score=91.13  Aligned_cols=77  Identities=22%  Similarity=0.261  Sum_probs=59.5

Q ss_pred             CCCEEEEccCCC-CCcccCCCCCCccCCC-ceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHH
Q psy16200         10 GYTAIFIGIGKP-NANVIPIFQGLTEEMG-FYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATS   87 (183)
Q Consensus        10 ~~davviATGa~-~p~~l~i~gg~~~~~~-V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~   87 (183)
                      .+|.||+|||.. .|+.|.++ |++++.| ++++.++-.                 .....+|||+|||+|.+|+++|..
T Consensus       132 ~a~~vV~ATG~~~~P~iP~~~-G~~~f~g~~~HS~~~~~-----------------~~~~~GKrV~VIG~GaSA~di~~~  193 (443)
T COG2072         132 TADFVVVATGHLSEPYIPDFA-GLDEFKGRILHSADWPN-----------------PEDLRGKRVLVIGAGASAVDIAPE  193 (443)
T ss_pred             ecCEEEEeecCCCCCCCCCCC-CccCCCceEEchhcCCC-----------------ccccCCCeEEEECCCccHHHHHHH
Confidence            489999999964 68888999 6566655 444444422                 123456779999999999999999


Q ss_pred             HHHcCCceEEEEEeecCC
Q psy16200         88 ALRCGANKVLVVFRKGCT  105 (183)
Q Consensus        88 l~~~G~~~V~lv~r~~~~  105 (183)
                      |++.| ++|+++.|++..
T Consensus       194 l~~~g-a~vt~~qRs~~~  210 (443)
T COG2072         194 LAEVG-ASVTLSQRSPPH  210 (443)
T ss_pred             HHhcC-CeeEEEecCCCc
Confidence            99999 489999998753

>KOG2495|consensus

Probab=98.85  E-value=1.1e-08  Score=85.51  Aligned_cols=148  Identities=15%  Similarity=0.160  Sum_probs=92.0

Q ss_pred             hCCCCEEEEccCCCCCcccCCCCCCccCC----CceehhhhHHHHhccc-cCCccCCCCCCCCCCCcc---eEEEEcCCh
Q psy16200          8 KDGYTAIFIGIGKPNANVIPIFQGLTEEM----GFYTSKTFLPRVATSS-KKGLCGGCKKESLPILKG---TVIVLGAGD   79 (183)
Q Consensus         8 ~~~~davviATGa~~p~~l~i~gg~~~~~----~V~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~---~VvViGgG~   79 (183)
                      ..+||.+|+|+|+ .+....+| |+.+..    -+..+.++-+...++. ++..  ...  . .+-.+   +.||||||.
T Consensus       156 ~i~YDyLViA~GA-~~~TFgip-GV~e~~~FLKEv~dAqeIR~~~~~~le~a~~--~~l--~-~eerkRlLh~VVVGGGP  228 (491)
T KOG2495|consen  156 VIGYDYLVIAVGA-EPNTFGIP-GVEENAHFLKEVEDAQEIRRKVIDNLEKAEL--PGL--S-DEERKRLLHFVVVGGGP  228 (491)
T ss_pred             eecccEEEEeccC-CCCCCCCC-chhhchhhhhhhhHHHHHHHHHHHHHHHhhc--CCC--C-hHHhhheEEEEEECCCC
Confidence            4579999999999 58888899 655432    2333333322221110 0000  000  0 11112   499999999


Q ss_pred             hHHHHHHHHHHc--------------CCceEEEEEeecCCcCCCCHHHH-H----HHHHcCcEEEeCCcceEEEccCCcE
Q psy16200         80 TAFDCATSALRC--------------GANKVLVVFRKGCTNIRAVPEEV-Q----LAWEEKCEFLPFMSPVQVDVKDNKI  140 (183)
Q Consensus        80 ~g~e~A~~l~~~--------------G~~~V~lv~r~~~~~~~~~~~~~-~----~~~~~gv~~~~~~~~~~i~~~~~~v  140 (183)
                      +|+|+|..|+..              -. +||+++-.+.. ++..+..+ +    +..+.||.+.+++.+..+..  .. 
T Consensus       229 TGVEFAaEL~Dfi~~Dl~k~yp~l~~~i-~vtLiEA~d~i-L~mFdkrl~~yae~~f~~~~I~~~~~t~Vk~V~~--~~-  303 (491)
T KOG2495|consen  229 TGVEFAAELADFIPEDLRKIYPELKKDI-KVTLIEAADHI-LNMFDKRLVEYAENQFVRDGIDLDTGTMVKKVTE--KT-  303 (491)
T ss_pred             cceeehHHHHHHHHHHHHHhhhcchhhe-EEEeeccchhH-HHHHHHHHHHHHHHHhhhccceeecccEEEeecC--cE-
Confidence            999999888733              23 58888766543 44444332 2    33567999999999988864  22 


Q ss_pred             EEEEEEEeeecCCCCeecCCCceEEEECCEEEEccccccc
Q psy16200        141 AGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLL  180 (183)
Q Consensus       141 ~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~  180 (183)
                        |....           .+|+..+||.-.++.|+|..|.
T Consensus       304 --I~~~~-----------~~g~~~~iPYG~lVWatG~~~r  330 (491)
T KOG2495|consen  304 --IHAKT-----------KDGEIEEIPYGLLVWATGNGPR  330 (491)
T ss_pred             --EEEEc-----------CCCceeeecceEEEecCCCCCc
Confidence              22321           3567789999999999998774

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=98.75  E-value=2e-07  Score=75.01  Aligned_cols=93  Identities=23%  Similarity=0.278  Sum_probs=63.1

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeecC---C-------cCCCC-----HHHH-----HHHHHcCcEEEeCCcc
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC---T-------NIRAV-----PEEV-----QLAWEEKCEFLPFMSP  130 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~---~-------~~~~~-----~~~~-----~~~~~~gv~~~~~~~~  130 (183)
                      +|+|||||..|+.+|..|.+.|. +|+|+++...   .       ..|..     ..++     ..+.+.|+++++ ..+
T Consensus         2 dvvIIG~G~aGl~aA~~l~~~g~-~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~-~~v   79 (300)
T TIGR01292         2 DVIIIGAGPAGLTAAIYAARANL-KTLIIEGMEPGGQLTTTTEVENYPGFPEGISGPELMEKMKEQAVKFGAEIIY-EEV   79 (300)
T ss_pred             cEEEECCCHHHHHHHHHHHHCCC-CEEEEeccCCCcceeecccccccCCCCCCCChHHHHHHHHHHHHHcCCeEEE-EEE
Confidence            49999999999999999999997 6999997541   0       01211     1111     234567899887 677


Q ss_pred             eEEEccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccccccC
Q psy16200        131 VQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLD  181 (183)
Q Consensus       131 ~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~  181 (183)
                      .++..+++.++ ++.             .++  .++.+|.||+|+|..|+.
T Consensus        80 ~~v~~~~~~~~-v~~-------------~~~--~~~~~d~liiAtG~~~~~  114 (300)
T TIGR01292        80 IKVDLSDRPFK-VKT-------------GDG--KEYTAKAVIIATGASARK  114 (300)
T ss_pred             EEEEecCCeeE-EEe-------------CCC--CEEEeCEEEECCCCCccc
Confidence            77764333222 222             122  368999999999998864

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.72  E-value=2.1e-07  Score=77.68  Aligned_cols=143  Identities=15%  Similarity=0.230  Sum_probs=91.2

Q ss_pred             CCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcce-EEEEcCChhHHHHHHHH
Q psy16200         10 GYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGT-VIVLGAGDTAFDCATSA   88 (183)
Q Consensus        10 ~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-VvViGgG~~g~e~A~~l   88 (183)
                      ..+.+||++|. .|..|+.... ...+.|+++.+|+....                ....++ |.|||+|.+|.|+-..|
T Consensus       145 ~ar~lVlg~G~-~P~IP~~f~~-l~~~~vfHss~~~~~~~----------------~~~~~~~V~ViG~GQSAAEi~~~L  206 (436)
T COG3486         145 RARNLVLGVGT-QPYIPPCFRS-LIGERVFHSSEYLERHP----------------ELLQKRSVTVIGSGQSAAEIFLDL  206 (436)
T ss_pred             EeeeEEEccCC-CcCCChHHhC-cCccceeehHHHHHhhH----------------HhhcCceEEEEcCCccHHHHHHHH
Confidence            35789999997 5887764322 22356999999986532                223345 99999999999988877


Q ss_pred             HHcC--C-ceEEEEEeecCCcCCCCHH--------------------H--------------------HH----HH----
Q psy16200         89 LRCG--A-NKVLVVFRKGCTNIRAVPE--------------------E--------------------VQ----LA----  117 (183)
Q Consensus        89 ~~~G--~-~~V~lv~r~~~~~~~~~~~--------------------~--------------------~~----~~----  117 (183)
                      ...-  . .++..+.|+... .|....                    +                    +.    .+    
T Consensus       207 l~~~~~~~~~l~witR~~gf-~p~d~Skf~~e~F~P~y~dyfy~l~~~~r~~ll~~~~~~YkgI~~~ti~~Iy~~lY~~~  285 (436)
T COG3486         207 LNSQPPQDYQLNWITRSSGF-LPMDYSKFGLEYFSPEYTDYFYGLPPEARDELLRKQRLLYKGISFDTIEEIYDLLYEQS  285 (436)
T ss_pred             HhCCCCcCccceeeeccCCC-CccccchhhhhhcCchhHHHHhcCCHHHHHHHHhhcCccccccCHHHHHHHHHHHHHHH
Confidence            5431  1 136678887542 222100                    0                    00    00    


Q ss_pred             ---HHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccccccC
Q psy16200        118 ---WEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLD  181 (183)
Q Consensus       118 ---~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~  181 (183)
                         .+..+.++.++.+.++..+++....+.+..          ..+++..++++|.||+|+||+...
T Consensus       286 l~~~~~~v~l~~~~ev~~~~~~G~g~~~l~~~~----------~~~~~~~t~~~D~vIlATGY~~~~  342 (436)
T COG3486         286 LGGRKPDVRLLSLSEVQSVEPAGDGRYRLTLRH----------HETGELETVETDAVILATGYRRAV  342 (436)
T ss_pred             hcCCCCCeeeccccceeeeecCCCceEEEEEee----------ccCCCceEEEeeEEEEecccccCC
Confidence               023467788888888876443323355543          146778899999999999998543

>KOG1399|consensus

Probab=98.70  E-value=4.6e-08  Score=83.70  Aligned_cols=77  Identities=17%  Similarity=0.265  Sum_probs=54.1

Q ss_pred             hhCCCCEEEEccCCCC-CcccCCCCC-CccCCC-ceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHH
Q psy16200          7 RKDGYTAIFIGIGKPN-ANVIPIFQG-LTEEMG-FYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFD   83 (183)
Q Consensus         7 ~~~~~davviATGa~~-p~~l~i~gg-~~~~~~-V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e   83 (183)
                      .++-||+|++|||... |+.|.+|+. ++.++| ++++.+|-..                 ....+++|+|||+|++|+|
T Consensus       138 ~~~ifd~VvVctGh~~~P~~P~~~g~~~~~f~G~~iHS~~Yk~~-----------------e~f~~k~VlVIG~g~SG~D  200 (448)
T KOG1399|consen  138 EEEIFDAVVVCTGHYVEPRIPQIPGPGIESFKGKIIHSHDYKSP-----------------EKFRDKVVLVVGCGNSGMD  200 (448)
T ss_pred             eEEEeeEEEEcccCcCCCCCCcCCCCchhhcCCcceehhhccCc-----------------ccccCceEEEECCCccHHH
Confidence            4556999999999753 777778731 335554 5555554311                 1223456999999999999


Q ss_pred             HHHHHHHcCCceEEEEEe
Q psy16200         84 CATSALRCGANKVLVVFR  101 (183)
Q Consensus        84 ~A~~l~~~G~~~V~lv~r  101 (183)
                      ++..+++.. ++|++..+
T Consensus       201 Is~d~~~~a-k~v~~~~~  217 (448)
T KOG1399|consen  201 ISLDLLRVA-KEVHLSVV  217 (448)
T ss_pred             HHHHHHHhc-cCcceeee
Confidence            999988874 57988865

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=98.66  E-value=2.5e-07  Score=79.07  Aligned_cols=98  Identities=14%  Similarity=0.153  Sum_probs=66.6

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCC-ceEEEEEeecCCc-----CCC-------CHHH-----HHHHHHcCcEEEeCCcceE
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGA-NKVLVVFRKGCTN-----IRA-------VPEE-----VQLAWEEKCEFLPFMSPVQ  132 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~-~~V~lv~r~~~~~-----~~~-------~~~~-----~~~~~~~gv~~~~~~~~~~  132 (183)
                      ||+|||||+.|+.+|..|++++. -+|+|+++++...     ++.       ...+     ...+.+.|++++++..+.+
T Consensus         2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~~   81 (444)
T PRK09564          2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGACGLPYFVGGFFDDPNTMIARTPEEFIKSGIDVKTEHEVVK   81 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeecCCCceEeccccCCHHHhhcCCHHHHHHCCCeEEecCEEEE
Confidence            69999999999999999998863 1699999876421     111       0111     1235667999998888888


Q ss_pred             EEccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccccccC
Q psy16200        133 VDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLD  181 (183)
Q Consensus       133 i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~  181 (183)
                      +..++..+   ++..          ..+++...+.+|.+|+|+|.+|+.
T Consensus        82 id~~~~~v---~~~~----------~~~~~~~~~~yd~lviAtG~~~~~  117 (444)
T PRK09564         82 VDAKNKTI---TVKN----------LKTGSIFNDTYDKLMIATGARPII  117 (444)
T ss_pred             EECCCCEE---EEEE----------CCCCCEEEecCCEEEECCCCCCCC
Confidence            86544433   2321          012333445599999999999864

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=98.55  E-value=1.2e-06  Score=74.95  Aligned_cols=99  Identities=9%  Similarity=0.124  Sum_probs=66.7

Q ss_pred             ceEEEEcCChhHHHHHHHHHHc--CCceEEEEEeecCCc-C----CCC-------H-HHH----HHH-HHcCcEEEeCCc
Q psy16200         70 GTVIVLGAGDTAFDCATSALRC--GANKVLVVFRKGCTN-I----RAV-------P-EEV----QLA-WEEKCEFLPFMS  129 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~--G~~~V~lv~r~~~~~-~----~~~-------~-~~~----~~~-~~~gv~~~~~~~  129 (183)
                      +||||||||+.|+.+|..|.++  +. +|+|+.+++... .    |..       . ..+    +.+ .+.|++++.+..
T Consensus         2 ~~VVIIGgG~aG~~aA~~l~~~~~~~-~I~li~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~   80 (438)
T PRK13512          2 PKIIVVGAVAGGATCASQIRRLDKES-DIIIFEKDRDMSFANCALPYYIGEVVEDRKYALAYTPEKFYDRKQITVKTYHE   80 (438)
T ss_pred             CeEEEECCcHHHHHHHHHHHhhCCCC-CEEEEECCCCcccccCCcchhhcCccCCHHHcccCCHHHHHHhCCCEEEeCCE
Confidence            3699999999999999999877  44 699999875321 1    111       0 011    122 346899998888


Q ss_pred             ceEEEccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccccccCC
Q psy16200        130 PVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDN  182 (183)
Q Consensus       130 ~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~  182 (183)
                      +.++..++..|   .+..          ..+++..++.+|.+|+|+|..|+..
T Consensus        81 V~~Id~~~~~v---~~~~----------~~~~~~~~~~yd~lviAtGs~~~~~  120 (438)
T PRK13512         81 VIAINDERQTV---TVLN----------RKTNEQFEESYDKLILSPGASANSL  120 (438)
T ss_pred             EEEEECCCCEE---EEEE----------CCCCcEEeeecCEEEECCCCCCCCC
Confidence            88887544433   2321          0123445688999999999998643

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=98.48  E-value=3.3e-07  Score=69.61  Aligned_cols=100  Identities=22%  Similarity=0.308  Sum_probs=66.9

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCCc-----CCCC------H-----------HHHHHHHHcCcEEEeCC
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTN-----IRAV------P-----------EEVQLAWEEKCEFLPFM  128 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~~-----~~~~------~-----------~~~~~~~~~gv~~~~~~  128 (183)
                      +|+|||||..|+.+|..|++.+. +|+++++.+...     ++..      .           ..++.+...+++++.+.
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~~~~-~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~   79 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELARPGA-KVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPARLFKLVDQLKNRGVEIRLNA   79 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTS-EEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHTHEEEHHH
T ss_pred             CEEEEecHHHHHHHHHHHhcCCC-eEEEEecccccccccccccccccccccccccccccccccccccccccceEEEeecc
Confidence            58999999999999999999997 699996543210     0000      0           11112346789998888


Q ss_pred             cceEEEccCCcEEE--EEEEEeeecCCCCeecCCCceEEEECCEEEEcccccccC
Q psy16200        129 SPVQVDVKDNKIAG--MQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLD  181 (183)
Q Consensus       129 ~~~~i~~~~~~v~~--v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~  181 (183)
                      .+.++......+..  +.+..          ..+++..++.+|+||+|+|..|+.
T Consensus        80 ~v~~i~~~~~~~~~~~~~~~~----------~~~~~~~~~~~d~lviAtG~~~~~  124 (201)
T PF07992_consen   80 KVVSIDPESKRVVCPAVTIQV----------VETGDGREIKYDYLVIATGSRPRT  124 (201)
T ss_dssp             TEEEEEESTTEEEETCEEEEE----------EETTTEEEEEEEEEEEESTEEEEE
T ss_pred             ccccccccccccccCccccee----------eccCCceEecCCeeeecCccccce
Confidence            88888654443210  01110          135567899999999999998764

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=98.47  E-value=2.6e-06  Score=69.61  Aligned_cols=33  Identities=27%  Similarity=0.445  Sum_probs=27.9

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC  104 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~  104 (183)
                      +|+|||||..|+-+|..|++.|. +|+|++|++.
T Consensus         3 dV~IvGaG~aGl~~A~~L~~~G~-~v~i~E~~~~   35 (356)
T PF01494_consen    3 DVAIVGAGPAGLAAALALARAGI-DVTIIERRPD   35 (356)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTC-EEEEEESSSS
T ss_pred             eEEEECCCHHHHHHHHHHHhccc-ccccchhccc
Confidence            49999999999999999999998 6999998543

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=98.43  E-value=1.2e-06  Score=74.41  Aligned_cols=93  Identities=22%  Similarity=0.255  Sum_probs=54.3

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCC-----------------------cCCC---CHH------------
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCT-----------------------NIRA---VPE------------  112 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~-----------------------~~~~---~~~------------  112 (183)
                      +|+|||||..|+-+|..+++.|. +|+|++|....                       ....   ...            
T Consensus         2 dviIIGgGaAGl~aA~~aa~~g~-~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~   80 (409)
T PF03486_consen    2 DVIIIGGGAAGLMAAITAAEKGA-RVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPE   80 (409)
T ss_dssp             SEEEE--SHHHHHHHHHHHHTT---EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HH
T ss_pred             cEEEECCCHHHHHHHHHHHhCCC-CEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHH
Confidence            38999999999999999999997 69999984321                       0000   000            


Q ss_pred             ----------------------------------HHHHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeec
Q psy16200        113 ----------------------------------EVQLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVE  158 (183)
Q Consensus       113 ----------------------------------~~~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~  158 (183)
                                                        ....+.+.||++++++.+.++..+++.+..|+.             
T Consensus        81 d~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~-------------  147 (409)
T PF03486_consen   81 DLIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKT-------------  147 (409)
T ss_dssp             HHHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEE-------------
T ss_pred             HHHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeec-------------
Confidence                                              112235568999999999999765566544443             


Q ss_pred             CCCceEEEECCEEEEcccccc
Q psy16200        159 DEEQRIKLKANYIISAFGSTL  179 (183)
Q Consensus       159 ~~g~~~~i~~D~Vi~a~G~~p  179 (183)
                        .....+.||.||+|+|-.+
T Consensus       148 --~~~~~~~a~~vILAtGG~S  166 (409)
T PF03486_consen  148 --KNGGEYEADAVILATGGKS  166 (409)
T ss_dssp             --TTTEEEEESEEEE----SS
T ss_pred             --cCcccccCCEEEEecCCCC
Confidence              1345899999999999654

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=98.43  E-value=2.3e-06  Score=72.22  Aligned_cols=94  Identities=12%  Similarity=0.087  Sum_probs=62.3

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCc-eEEEEEeecCC-c--CCCCHHH-------------HHHHHHcCcEEEeCCcceE
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGAN-KVLVVFRKGCT-N--IRAVPEE-------------VQLAWEEKCEFLPFMSPVQ  132 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~-~V~lv~r~~~~-~--~~~~~~~-------------~~~~~~~gv~~~~~~~~~~  132 (183)
                      ++|+|||||..|+.+|..|.++|.+ +|+|+.+++.. .  .+.....             .....+.+|+++.++.+..
T Consensus         4 ~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~V~~   83 (396)
T PRK09754          4 KTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERPPLSKSMLLEDSPQLQQVLPANWWQENNVHLHSGVTIKT   83 (396)
T ss_pred             CcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCCCCCCHHHHCCCCccccccCCHHHHHHCCCEEEcCCEEEE
Confidence            5699999999999999999998742 59999876431 0  0111111             1123456888888877777


Q ss_pred             EEccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccccccC
Q psy16200        133 VDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLD  181 (183)
Q Consensus       133 i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~  181 (183)
                      +..++..+   .+             .+|+  ++.+|.||+|+|..|..
T Consensus        84 id~~~~~v---~~-------------~~g~--~~~yd~LViATGs~~~~  114 (396)
T PRK09754         84 LGRDTREL---VL-------------TNGE--SWHWDQLFIATGAAARP  114 (396)
T ss_pred             EECCCCEE---EE-------------CCCC--EEEcCEEEEccCCCCCC
Confidence            75432222   22             2232  68999999999999853

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=98.41  E-value=5.1e-06  Score=72.62  Aligned_cols=95  Identities=18%  Similarity=0.229  Sum_probs=63.9

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCCcC------------C-CCHHH-----HHHHHHcCcEEEeCCcce
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNI------------R-AVPEE-----VQLAWEEKCEFLPFMSPV  131 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~~~------------~-~~~~~-----~~~~~~~gv~~~~~~~~~  131 (183)
                      .+|+|||||..|+.+|..|++.|. +|+++..+-..+.            + ....+     ...+.+.|++++.+..+.
T Consensus       213 ~dVvIIGgGpAGl~AA~~la~~G~-~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~gv~i~~~~~V~  291 (515)
T TIGR03140       213 YDVLVVGGGPAGAAAAIYAARKGL-RTAMVAERIGGQVKDTVGIENLISVPYTTGSQLAANLEEHIKQYPIDLMENQRAK  291 (515)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCC-cEEEEecCCCCccccCcCcccccccCCCCHHHHHHHHHHHHHHhCCeEEcCCEEE
Confidence            469999999999999999999997 6999964211000            0 11111     123456789999998888


Q ss_pred             EEEccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccccccC
Q psy16200        132 QVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLD  181 (183)
Q Consensus       132 ~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~  181 (183)
                      ++..+++... +++             .++.  .+.+|.+|+|+|..|..
T Consensus       292 ~I~~~~~~~~-v~~-------------~~g~--~i~~d~lIlAtGa~~~~  325 (515)
T TIGR03140       292 KIETEDGLIV-VTL-------------ESGE--VLKAKSVIVATGARWRK  325 (515)
T ss_pred             EEEecCCeEE-EEE-------------CCCC--EEEeCEEEECCCCCcCC
Confidence            8764333222 222             1232  68999999999998753

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=98.38  E-value=4.9e-06  Score=69.51  Aligned_cols=31  Identities=32%  Similarity=0.575  Sum_probs=28.5

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      .|+|||||..|+-+|..+++.|. +|+++++.
T Consensus         5 dviIIGgGpAGlMaA~~aa~~G~-~V~lid~~   35 (408)
T COG2081           5 DVIIIGGGPAGLMAAISAAKAGR-RVLLIDKG   35 (408)
T ss_pred             eEEEECCCHHHHHHHHHHhhcCC-EEEEEecC
Confidence            49999999999999999999996 79999973

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=98.36  E-value=1.8e-06  Score=71.85  Aligned_cols=98  Identities=16%  Similarity=0.094  Sum_probs=62.0

Q ss_pred             CCCcceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCCc--C----CC---CHH----HHHHHHHcCcEEEeCCcceE
Q psy16200         66 PILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTN--I----RA---VPE----EVQLAWEEKCEFLPFMSPVQ  132 (183)
Q Consensus        66 ~~~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~~--~----~~---~~~----~~~~~~~~gv~~~~~~~~~~  132 (183)
                      +..+++|+|||+|+.|+++|..|++.|. +|+++++.+...  +    +.   ..+    .+..+.+.|++++.++.+..
T Consensus        15 ~~~~~~VvIIG~G~aGl~aA~~l~~~g~-~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~v~~   93 (352)
T PRK12770         15 PPTGKKVAIIGAGPAGLAAAGYLACLGY-EVHVYDKLPEPGGLMLFGIPEFRIPIERVREGVKELEEAGVVFHTRTKVCC   93 (352)
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHCCC-cEEEEeCCCCCCceeeecCcccccCHHHHHHHHHHHHhCCeEEecCcEEee
Confidence            4456789999999999999999999996 699999865421  1    11   111    23345667899988876644


Q ss_pred             EEc----cCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEccccc
Q psy16200        133 VDV----KDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGST  178 (183)
Q Consensus       133 i~~----~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~  178 (183)
                      +..    +.+... ...             ...+...+.+|.||+|+|..
T Consensus        94 ~~~~~~~~~~~~~-~~~-------------~~~~~~~~~~d~lviAtGs~  129 (352)
T PRK12770         94 GEPLHEEEGDEFV-ERI-------------VSLEELVKKYDAVLIATGTW  129 (352)
T ss_pred             ccccccccccccc-ccc-------------CCHHHHHhhCCEEEEEeCCC
Confidence            321    001000 000             01111246899999999983

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=98.34  E-value=1.4e-05  Score=68.96  Aligned_cols=34  Identities=32%  Similarity=0.391  Sum_probs=30.7

Q ss_pred             cceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      .++|+|||||..|+-+|..|.+.|. +|+++++++
T Consensus        10 ~~~VaIIGAG~aGL~aA~~l~~~G~-~v~vfE~~~   43 (461)
T PLN02172         10 SQHVAVIGAGAAGLVAARELRREGH-TVVVFEREK   43 (461)
T ss_pred             CCCEEEECCcHHHHHHHHHHHhcCC-eEEEEecCC
Confidence            4679999999999999999999997 699999854

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=98.31  E-value=1.2e-05  Score=70.40  Aligned_cols=95  Identities=18%  Similarity=0.206  Sum_probs=63.8

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCCc---------C---CC-CHHHH-----HHHHHcCcEEEeCCcce
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTN---------I---RA-VPEEV-----QLAWEEKCEFLPFMSPV  131 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~~---------~---~~-~~~~~-----~~~~~~gv~~~~~~~~~  131 (183)
                      -+|+|||||..|+.+|.+|+++|. +|+++.++-..+         .   +. ...++     ..+.+.|+++++++.+.
T Consensus       212 ~dvvIIGgGpaGl~aA~~la~~G~-~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~V~  290 (517)
T PRK15317        212 YDVLVVGGGPAGAAAAIYAARKGI-RTGIVAERFGGQVLDTMGIENFISVPETEGPKLAAALEEHVKEYDVDIMNLQRAS  290 (517)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCC-cEEEEecCCCCeeeccCcccccCCCCCCCHHHHHHHHHHHHHHCCCEEEcCCEEE
Confidence            359999999999999999999997 699997531000         0   11 11121     23456789999888888


Q ss_pred             EEEccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccccccC
Q psy16200        132 QVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLD  181 (183)
Q Consensus       132 ~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~  181 (183)
                      ++..+++..+ +++             .++.  ++.+|.||+|+|..|..
T Consensus       291 ~I~~~~~~~~-V~~-------------~~g~--~i~a~~vViAtG~~~r~  324 (517)
T PRK15317        291 KLEPAAGLIE-VEL-------------ANGA--VLKAKTVILATGARWRN  324 (517)
T ss_pred             EEEecCCeEE-EEE-------------CCCC--EEEcCEEEECCCCCcCC
Confidence            8765333222 322             1232  68899999999987753

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=98.30  E-value=7.9e-06  Score=68.79  Aligned_cols=30  Identities=43%  Similarity=0.670  Sum_probs=25.9

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEe
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFR  101 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r  101 (183)
                      +|+|||||..|+|+|..+++.|+ +|.|+..
T Consensus         1 DViVVGgG~AG~eAA~aaAr~G~-~V~Lit~   30 (392)
T PF01134_consen    1 DVIVVGGGHAGCEAALAAARMGA-KVLLITH   30 (392)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTT---EEEEES
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC-CEEEEee
Confidence            48999999999999999999998 6999953

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=98.29  E-value=9.1e-06  Score=68.14  Aligned_cols=94  Identities=10%  Similarity=0.185  Sum_probs=62.4

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCC-ceEEEEEeecCCc--CCCC---------HHHH------HHHHHcCcEEEeCCcce
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGA-NKVLVVFRKGCTN--IRAV---------PEEV------QLAWEEKCEFLPFMSPV  131 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~-~~V~lv~r~~~~~--~~~~---------~~~~------~~~~~~gv~~~~~~~~~  131 (183)
                      ++|||||||..|+.+|+.|.+++. -+|+++.+.+...  .+..         ..++      +.+.+.|++++.+..+.
T Consensus         3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~   82 (377)
T PRK04965          3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEYNKPDLSHVFSQGQRADDLTRQSAGEFAEQFNLRLFPHTWVT   82 (377)
T ss_pred             CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCCcCcCcCcHHHhCCCCHHHhhcCCHHHHHHhCCCEEECCCEEE
Confidence            469999999999999999987542 2699998865311  0111         1111      11245689998888887


Q ss_pred             EEEccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccccccCC
Q psy16200        132 QVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDN  182 (183)
Q Consensus       132 ~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~  182 (183)
                      ++..++..+   +.              ++  ..+.+|.||+|+|..|...
T Consensus        83 ~id~~~~~v---~~--------------~~--~~~~yd~LVlATG~~~~~p  114 (377)
T PRK04965         83 DIDAEAQVV---KS--------------QG--NQWQYDKLVLATGASAFVP  114 (377)
T ss_pred             EEECCCCEE---EE--------------CC--eEEeCCEEEECCCCCCCCC
Confidence            776432222   11              22  3689999999999998643

>PRK10262 thioredoxin reductase; Provisional

Probab=98.28  E-value=9.5e-06  Score=66.50  Aligned_cols=31  Identities=19%  Similarity=0.450  Sum_probs=28.0

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEe
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFR  101 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r  101 (183)
                      ++|+|||||..|+.+|..|+++|. +|++++.
T Consensus         7 ~~vvIIGgGpaGl~aA~~l~~~g~-~~~~ie~   37 (321)
T PRK10262          7 SKLLILGSGPAGYTAAVYAARANL-QPVLITG   37 (321)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCC-CeEEEEe
Confidence            569999999999999999999997 5988875

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=98.27  E-value=2e-05  Score=62.98  Aligned_cols=31  Identities=32%  Similarity=0.460  Sum_probs=29.0

Q ss_pred             EEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         72 VIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        72 VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      |+|||||..|+-+|..|++.|. +|++++++.
T Consensus         3 v~IiGaG~aGl~~A~~l~~~g~-~v~vie~~~   33 (295)
T TIGR02032         3 VVVVGAGPAGASAAYRLADKGL-RVLLLEKKS   33 (295)
T ss_pred             EEEECCCHHHHHHHHHHHHCCC-eEEEEeccC
Confidence            8999999999999999999997 699999874

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=98.24  E-value=2.5e-05  Score=62.50  Aligned_cols=105  Identities=22%  Similarity=0.265  Sum_probs=69.8

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCCc---------CCC----------------------------CHH
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTN---------IRA----------------------------VPE  112 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~~---------~~~----------------------------~~~  112 (183)
                      -+|+|||||..|+-+|..|++.|. +|.++++.....         .+.                            ...
T Consensus        26 ~DVvIVGgGpAGl~AA~~la~~G~-~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~~~~~~g~~~vd~~  104 (257)
T PRK04176         26 VDVAIVGAGPSGLTAAYYLAKAGL-KVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRYKEVEDGLYVADSV  104 (257)
T ss_pred             CCEEEECccHHHHHHHHHHHhCCC-eEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCceeecCcceeccHH
Confidence            359999999999999999999997 699999864310         000                            001


Q ss_pred             H-----HHHHHHcCcEEEeCCcceEEEccCC-cEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccccc
Q psy16200        113 E-----VQLAWEEKCEFLPFMSPVQVDVKDN-KIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTL  179 (183)
Q Consensus       113 ~-----~~~~~~~gv~~~~~~~~~~i~~~~~-~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p  179 (183)
                      +     ...+.+.|+++++++.+.++..+++ ++.++.+........+    ......++.|+.||.|+|...
T Consensus       105 ~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g----~~~~~~~i~Ak~VI~ATG~~a  173 (257)
T PRK04176        105 EAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAG----LHVDPLTIEAKAVVDATGHDA  173 (257)
T ss_pred             HHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccC----CCCCcEEEEcCEEEEEeCCCc
Confidence            1     1234567999999999988865444 7877765321000000    112346899999999999643

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.23  E-value=2.5e-05  Score=66.04  Aligned_cols=34  Identities=15%  Similarity=0.255  Sum_probs=30.8

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC  104 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~  104 (183)
                      .+|+|||||..|+-+|..|++.|. +|+|+++++.
T Consensus        19 ~dV~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~~   52 (415)
T PRK07364         19 YDVAIVGGGIVGLTLAAALKDSGL-RIALIEAQPA   52 (415)
T ss_pred             cCEEEECcCHHHHHHHHHHhcCCC-EEEEEecCCc
Confidence            459999999999999999999997 6999998754

>TIGR00292 thiazole biosynthesis enzyme

Probab=98.23  E-value=2.1e-05  Score=62.85  Aligned_cols=104  Identities=21%  Similarity=0.271  Sum_probs=69.1

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCCc---------CCCC------HH----------------------H
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTN---------IRAV------PE----------------------E  113 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~~---------~~~~------~~----------------------~  113 (183)
                      +|+|||||..|+-+|..|++.|. +|.+++|+...-         ++..      .+                      +
T Consensus        23 DVvIVGgGpAGL~aA~~la~~G~-~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~~~~~~~e  101 (254)
T TIGR00292        23 DVIIVGAGPSGLTAAYYLAKNGL-KVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIRYEDEGDGYVVADSAE  101 (254)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC-cEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCCeeeccCceEEeeHHH
Confidence            59999999999999999999997 699999864310         0000      00                      1


Q ss_pred             -----HHHHHHcCcEEEeCCcceEEEccCC--cEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccccc
Q psy16200        114 -----VQLAWEEKCEFLPFMSPVQVDVKDN--KIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTL  179 (183)
Q Consensus       114 -----~~~~~~~gv~~~~~~~~~~i~~~~~--~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p  179 (183)
                           ..++.+.|++++.++.+.++..+++  ++.++.+........+    ......++.++.||.|+|...
T Consensus       102 l~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g----~~~d~~~i~Ak~VVdATG~~a  170 (254)
T TIGR00292       102 FISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAG----LHVDPLTQRSRVVVDATGHDA  170 (254)
T ss_pred             HHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccC----CCCCCEEEEcCEEEEeecCCc
Confidence                 1233567899999999988865444  5777765211000000    011246899999999999654

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>PRK06847 hypothetical protein; Provisional

Probab=98.23  E-value=2.1e-05  Score=65.52  Aligned_cols=33  Identities=24%  Similarity=0.302  Sum_probs=30.1

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      .+|+|||||..|+-+|..|++.|. +|+++++++
T Consensus         5 ~~V~IVGaG~aGl~~A~~L~~~g~-~v~v~E~~~   37 (375)
T PRK06847          5 KKVLIVGGGIGGLSAAIALRRAGI-AVDLVEIDP   37 (375)
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCC-CEEEEecCC
Confidence            469999999999999999999998 699999864

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=98.22  E-value=1.7e-05  Score=64.85  Aligned_cols=31  Identities=29%  Similarity=0.425  Sum_probs=29.0

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      +|+|||||.+|+-+|..|++.|. +|+|+++.
T Consensus         1 DvvIIGaGi~G~~~A~~La~~G~-~V~l~e~~   31 (358)
T PF01266_consen    1 DVVIIGAGIAGLSTAYELARRGH-SVTLLERG   31 (358)
T ss_dssp             EEEEECTSHHHHHHHHHHHHTTS-EEEEEESS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCC-eEEEEeec
Confidence            48999999999999999999997 79999986

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=98.21  E-value=7.7e-06  Score=68.08  Aligned_cols=91  Identities=19%  Similarity=0.252  Sum_probs=58.3

Q ss_pred             eEEEEcCChhHHHHHHHHHHc---CCceEEEEEeecCCcC-CCCH---------HHH-----HHHHHcCcEEEeCCcceE
Q psy16200         71 TVIVLGAGDTAFDCATSALRC---GANKVLVVFRKGCTNI-RAVP---------EEV-----QLAWEEKCEFLPFMSPVQ  132 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~---G~~~V~lv~r~~~~~~-~~~~---------~~~-----~~~~~~gv~~~~~~~~~~  132 (183)
                      +|||||||+.|+.+|..+.++   +. +|+|+++++.... +..+         +++     ..+.+.|++|+.. .+.+
T Consensus         1 ~vvIiGgG~aG~~~a~~l~~~~~~~~-~I~li~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~-~v~~   78 (364)
T TIGR03169         1 HLVLIGGGHTHALVLRRWAMKPLPGV-RVTLINPSSTTPYSGMLPGMIAGHYSLDEIRIDLRRLARQAGARFVIA-EATG   78 (364)
T ss_pred             CEEEECCcHHHHHHHHHhcCcCCCCC-EEEEECCCCCCcccchhhHHHheeCCHHHhcccHHHHHHhcCCEEEEE-EEEE
Confidence            489999999999999998643   44 6999998764211 1111         111     1234467887764 5566


Q ss_pred             EEccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccccccC
Q psy16200        133 VDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLD  181 (183)
Q Consensus       133 i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~  181 (183)
                      +..++..|   .+             .+|+  ++..|.||+|+|..|+.
T Consensus        79 id~~~~~V---~~-------------~~g~--~~~yD~LviAtG~~~~~  109 (364)
T TIGR03169        79 IDPDRRKV---LL-------------ANRP--PLSYDVLSLDVGSTTPL  109 (364)
T ss_pred             EecccCEE---EE-------------CCCC--cccccEEEEccCCCCCC
Confidence            65332222   22             1232  58999999999999864

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>PRK07236 hypothetical protein; Provisional

Probab=98.20  E-value=2.8e-05  Score=65.28  Aligned_cols=34  Identities=24%  Similarity=0.144  Sum_probs=31.1

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC  104 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~  104 (183)
                      .+|+|||||..|+.+|..|++.|. +|+|+++++.
T Consensus         7 ~~ViIVGaG~aGl~~A~~L~~~G~-~v~v~E~~~~   40 (386)
T PRK07236          7 PRAVVIGGSLGGLFAALLLRRAGW-DVDVFERSPT   40 (386)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCC-CEEEEecCCC
Confidence            569999999999999999999998 6999998753

>PRK08244 hypothetical protein; Provisional

Probab=98.20  E-value=2.2e-05  Score=68.18  Aligned_cols=32  Identities=28%  Similarity=0.384  Sum_probs=29.4

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      +|+|||||.+|+-+|..|++.|. +|+|+++++
T Consensus         4 dVlIVGaGpaGl~lA~~L~~~G~-~v~viEr~~   35 (493)
T PRK08244          4 EVIIIGGGPVGLMLASELALAGV-KTCVIERLK   35 (493)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Confidence            49999999999999999999998 699999854

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=98.19  E-value=2.4e-05  Score=67.60  Aligned_cols=33  Identities=30%  Similarity=0.594  Sum_probs=29.7

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      ++|+|||+|..|+.+|..++++|. +|++++++.
T Consensus         2 ~~vvviG~G~~G~~~a~~~~~~g~-~v~~~e~~~   34 (466)
T PRK07845          2 TRIVIIGGGPGGYEAALVAAQLGA-DVTVIERDG   34 (466)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCC-eEEEEEccC
Confidence            459999999999999999999996 699999754

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=98.19  E-value=7.2e-06  Score=76.34  Aligned_cols=88  Identities=15%  Similarity=-0.000  Sum_probs=60.8

Q ss_pred             CcceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCC------cCCCC-------HHHHHHHHHcCcEEEeCCcceEEE
Q psy16200         68 LKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCT------NIRAV-------PEEVQLAWEEKCEFLPFMSPVQVD  134 (183)
Q Consensus        68 ~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~------~~~~~-------~~~~~~~~~~gv~~~~~~~~~~i~  134 (183)
                      .++||+|||+|..|+.+|.+|++.|. +|+++++....      ..|..       +.+++.+++.||+|+++..+-+  
T Consensus       305 ~gkkVaVIGsGPAGLsaA~~Lar~G~-~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~vG~--  381 (944)
T PRK12779        305 VKPPIAVVGSGPSGLINAYLLAVEGF-PVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVVGK--  381 (944)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCC-eEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCeEEEeEEecc--
Confidence            45779999999999999999999997 69999986431      12221       1244566788999988864311  


Q ss_pred             ccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEccccc-cc
Q psy16200        135 VKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGST-LL  180 (183)
Q Consensus       135 ~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~-p~  180 (183)
                          .   +++.               +-.....|.||+|+|.. |.
T Consensus       382 ----d---it~~---------------~l~~~~yDAV~LAtGA~~pr  406 (944)
T PRK12779        382 ----T---ATLE---------------DLKAAGFWKIFVGTGAGLPT  406 (944)
T ss_pred             ----E---EeHH---------------HhccccCCEEEEeCCCCCCC
Confidence                1   2221               11234689999999984 54

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=98.19  E-value=2.6e-05  Score=68.05  Aligned_cols=32  Identities=19%  Similarity=0.422  Sum_probs=29.1

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      .|+|||+|..|+-+|..+++.|+ +|.|+++.+
T Consensus        63 DVvVVG~G~AGl~AAi~Aa~~Ga-~VivlEK~~   94 (506)
T PRK06481         63 DIVIVGAGGAGMSAAIEAKDAGM-NPVILEKMP   94 (506)
T ss_pred             CEEEECcCHHHHHHHHHHHHCCC-CEEEEECCC
Confidence            49999999999999999999998 699999743

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=98.18  E-value=3.6e-05  Score=67.86  Aligned_cols=31  Identities=29%  Similarity=0.447  Sum_probs=28.8

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      .|+|||||.+|+-+|..|+++|. +|+|+++.
T Consensus         8 DVvIIGGGi~G~~iA~~La~rG~-~V~LlEk~   38 (546)
T PRK11101          8 DVIIIGGGATGAGIARDCALRGL-RCILVERH   38 (546)
T ss_pred             cEEEECcCHHHHHHHHHHHHcCC-eEEEEECC
Confidence            49999999999999999999997 69999984

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=98.18  E-value=1.3e-05  Score=60.93  Aligned_cols=93  Identities=19%  Similarity=0.187  Sum_probs=52.8

Q ss_pred             EEEcCChhHHHHHHHHHHcCCceEEEEEeecCC-------------cCCC--------------C-H-------------
Q psy16200         73 IVLGAGDTAFDCATSALRCGANKVLVVFRKGCT-------------NIRA--------------V-P-------------  111 (183)
Q Consensus        73 vViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~-------------~~~~--------------~-~-------------  111 (183)
                      +|||||..|+-+|..|.+.|.++|++++|.+..             ..|.              . .             
T Consensus         1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (203)
T PF13738_consen    1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFPS   80 (203)
T ss_dssp             EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSEB
T ss_pred             CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCcccCC
Confidence            699999999999999999998449999985321             0000              0 0             


Q ss_pred             -HHH-H----HHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccc--cccC
Q psy16200        112 -EEV-Q----LAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGS--TLLD  181 (183)
Q Consensus       112 -~~~-~----~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~--~p~~  181 (183)
                       +++ +    .+.+.++++++++.+.++..++++-+ +++             .++  +++.||.||+|+|.  .|+.
T Consensus        81 ~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~-v~~-------------~~~--~~~~a~~VVlAtG~~~~p~~  142 (203)
T PF13738_consen   81 GEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWT-VTT-------------RDG--RTIRADRVVLATGHYSHPRI  142 (203)
T ss_dssp             HHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEE-EEE-------------TTS---EEEEEEEEE---SSCSB--
T ss_pred             HHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEE-EEE-------------Eec--ceeeeeeEEEeeeccCCCCc
Confidence             011 1    12456788888999888876544432 443             223  57889999999996  5543

...

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=98.17  E-value=1.1e-05  Score=68.82  Aligned_cols=102  Identities=13%  Similarity=0.147  Sum_probs=59.2

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCCcC-CCCH---------HHH----H-HHHHcCcEEEeCCcceEEE
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNI-RAVP---------EEV----Q-LAWEEKCEFLPFMSPVQVD  134 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~~~-~~~~---------~~~----~-~~~~~gv~~~~~~~~~~i~  134 (183)
                      ++|||||||+.|+.+|..|.+.+. +|+||.+++.... |...         +.+    . .+...++.|+.. .+.+|.
T Consensus        11 ~~vVIvGgG~aGl~~a~~L~~~~~-~ItlI~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~-~V~~Id   88 (424)
T PTZ00318         11 PNVVVLGTGWAGAYFVRNLDPKKY-NITVISPRNHMLFTPLLPQTTTGTLEFRSICEPVRPALAKLPNRYLRA-VVYDVD   88 (424)
T ss_pred             CeEEEECCCHHHHHHHHHhCcCCC-eEEEEcCCCCcchhhhHHHhcccCCChHHhHHHHHHHhccCCeEEEEE-EEEEEE
Confidence            569999999999999998876555 6999998765321 1111         111    1 122345655433 455554


Q ss_pred             ccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccccccC
Q psy16200        135 VKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLD  181 (183)
Q Consensus       135 ~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~  181 (183)
                      .++..+. +...     ....  ..+++..++++|.+|+|+|..|+.
T Consensus        89 ~~~~~v~-~~~~-----~~~~--~~~~~g~~i~yD~LViAtGs~~~~  127 (424)
T PTZ00318         89 FEEKRVK-CGVV-----SKSN--NANVNTFSVPYDKLVVAHGARPNT  127 (424)
T ss_pred             cCCCEEE-Eecc-----cccc--cccCCceEecCCEEEECCCcccCC
Confidence            3333332 1110     0000  011233479999999999999864

>PRK06184 hypothetical protein; Provisional

Probab=98.17  E-value=3.1e-05  Score=67.38  Aligned_cols=32  Identities=25%  Similarity=0.397  Sum_probs=29.5

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      +|+|||||.+|+-+|..|+++|. +|+|+++++
T Consensus         5 dVlIVGaGpaGl~~A~~La~~Gi-~v~viE~~~   36 (502)
T PRK06184          5 DVLIVGAGPTGLTLAIELARRGV-SFRLIEKAP   36 (502)
T ss_pred             cEEEECCCHHHHHHHHHHHHCCC-cEEEEeCCC
Confidence            49999999999999999999998 699999864

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=98.17  E-value=8.2e-06  Score=70.62  Aligned_cols=78  Identities=18%  Similarity=0.108  Sum_probs=56.6

Q ss_pred             cceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCCcCCCCHHHHHHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEe
Q psy16200         69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRT  148 (183)
Q Consensus        69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~  148 (183)
                      +++|+|||+|.+|+++|..|+++|. +|+++++++..   ........+.+.|++++++..+.                 
T Consensus        16 ~~~v~viG~G~~G~~~A~~L~~~G~-~V~~~d~~~~~---~~~~~~~~l~~~gv~~~~~~~~~-----------------   74 (480)
T PRK01438         16 GLRVVVAGLGVSGFAAADALLELGA-RVTVVDDGDDE---RHRALAAILEALGATVRLGPGPT-----------------   74 (480)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchh---hhHHHHHHHHHcCCEEEECCCcc-----------------
Confidence            4679999999999999999999997 69999866421   11222344667788887664321                 


Q ss_pred             eecCCCCeecCCCceEEEECCEEEEcccccccCC
Q psy16200        149 EQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDN  182 (183)
Q Consensus       149 ~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~  182 (183)
                                     ....+|.||++.|..|+++
T Consensus        75 ---------------~~~~~D~Vv~s~Gi~~~~~   93 (480)
T PRK01438         75 ---------------LPEDTDLVVTSPGWRPDAP   93 (480)
T ss_pred             ---------------ccCCCCEEEECCCcCCCCH
Confidence                           0134789999999999864

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=98.15  E-value=1.1e-05  Score=75.15  Aligned_cols=85  Identities=22%  Similarity=0.276  Sum_probs=58.8

Q ss_pred             CcceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCC------cCCCC-------HHHHHHHHHcCcEEEeCCcceEEE
Q psy16200         68 LKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCT------NIRAV-------PEEVQLAWEEKCEFLPFMSPVQVD  134 (183)
Q Consensus        68 ~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~------~~~~~-------~~~~~~~~~~gv~~~~~~~~~~i~  134 (183)
                      .+++|+|||||..|+.+|.+|++.|. +|+|+++++..      ..|..       ..+++.+.+.||+|++++.+ .+ 
T Consensus       538 tgKkVaIIGgGPAGLsAA~~Lar~G~-~VtV~Ek~~~~GG~lr~~IP~~Rlp~evL~~die~l~~~GVe~~~gt~V-di-  614 (1019)
T PRK09853        538 SRKKVAVIGAGPAGLAAAYFLARAGH-PVTVFEREENAGGVVKNIIPQFRIPAELIQHDIEFVKAHGVKFEFGCSP-DL-  614 (1019)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCC-eEEEEecccccCcceeeecccccccHHHHHHHHHHHHHcCCEEEeCcee-EE-
Confidence            34679999999999999999999997 79999986431      11221       12234556779999888654 11 


Q ss_pred             ccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccccc
Q psy16200        135 VKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTL  179 (183)
Q Consensus       135 ~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p  179 (183)
                               ++.               .......|.||+|+|..+
T Consensus       615 ---------~le---------------~L~~~gYDaVILATGA~~  635 (1019)
T PRK09853        615 ---------TVE---------------QLKNEGYDYVVVAIGADK  635 (1019)
T ss_pred             ---------Ehh---------------hheeccCCEEEECcCCCC
Confidence                     111               012345799999999875

>PRK12831 putative oxidoreductase; Provisional

Probab=98.15  E-value=9e-06  Score=70.24  Aligned_cols=89  Identities=15%  Similarity=0.109  Sum_probs=58.4

Q ss_pred             CcceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCC--c----CCCC---HH-----HHHHHHHcCcEEEeCCcceEE
Q psy16200         68 LKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCT--N----IRAV---PE-----EVQLAWEEKCEFLPFMSPVQV  133 (183)
Q Consensus        68 ~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~--~----~~~~---~~-----~~~~~~~~gv~~~~~~~~~~i  133 (183)
                      .+++|+|||||..|+.+|.+|+++|. +|+++++....  .    .|..   .+     +.+.+.+.|++|++++.+.+ 
T Consensus       139 ~~~~V~IIG~GpAGl~aA~~l~~~G~-~V~v~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~~gv~i~~~~~v~~-  216 (464)
T PRK12831        139 KGKKVAVIGSGPAGLTCAGDLAKMGY-DVTIFEALHEPGGVLVYGIPEFRLPKETVVKKEIENIKKLGVKIETNVVVGK-  216 (464)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCC-eEEEEecCCCCCCeeeecCCCccCCccHHHHHHHHHHHHcCCEEEcCCEECC-
Confidence            45679999999999999999999997 69999975421  0    1211   11     22345677999988864311 


Q ss_pred             EccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccc-ccc
Q psy16200        134 DVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGS-TLL  180 (183)
Q Consensus       134 ~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~-~p~  180 (183)
                           .   +++              ++....+.+|.||+|+|. .|.
T Consensus       217 -----~---v~~--------------~~~~~~~~~d~viiAtGa~~~~  242 (464)
T PRK12831        217 -----T---VTI--------------DELLEEEGFDAVFIGSGAGLPK  242 (464)
T ss_pred             -----c---CCH--------------HHHHhccCCCEEEEeCCCCCCC
Confidence                 1   111              011123568999999997 454

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.14  E-value=6.1e-06  Score=70.56  Aligned_cols=32  Identities=28%  Similarity=0.345  Sum_probs=29.4

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      +|+|||||..|+.+|..|+++|. +|+|+++++
T Consensus         5 dvvVIG~GpaG~~aA~~l~~~g~-~V~liE~~~   36 (438)
T PRK07251          5 DLIVIGFGKAGKTLAAKLASAGK-KVALVEESK   36 (438)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCC-EEEEEecCC
Confidence            49999999999999999999996 799999864

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=98.13  E-value=1.7e-05  Score=72.63  Aligned_cols=93  Identities=14%  Similarity=0.198  Sum_probs=63.4

Q ss_pred             EEEEcCChhHHHHHHHHHHcCC--ceEEEEEeecCCc-----CCC------CHHHH-----HHHHHcCcEEEeCCcceEE
Q psy16200         72 VIVLGAGDTAFDCATSALRCGA--NKVLVVFRKGCTN-----IRA------VPEEV-----QLAWEEKCEFLPFMSPVQV  133 (183)
Q Consensus        72 VvViGgG~~g~e~A~~l~~~G~--~~V~lv~r~~~~~-----~~~------~~~~~-----~~~~~~gv~~~~~~~~~~i  133 (183)
                      |||||||..|+.+|..|.+++.  -+|+|+.+++...     ++.      ..+++     +.+.+.||+++++..+.++
T Consensus         1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L~~~l~g~~~~~~l~~~~~~~~~~~gv~~~~g~~V~~I   80 (785)
T TIGR02374         1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSSVLQGEADLDDITLNSKDWYEKHGITLYTGETVIQI   80 (785)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccccccHHHCCCCCHHHccCCCHHHHHHCCCEEEcCCeEEEE
Confidence            6899999999999999887641  2699999876521     110      01111     2345679999999888888


Q ss_pred             EccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccccccCC
Q psy16200        134 DVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDN  182 (183)
Q Consensus       134 ~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~  182 (183)
                      ..+...|   .+             .+|  .++++|.||+|+|..|+..
T Consensus        81 d~~~k~V---~~-------------~~g--~~~~yD~LVlATGs~p~~p  111 (785)
T TIGR02374        81 DTDQKQV---IT-------------DAG--RTLSYDKLILATGSYPFIL  111 (785)
T ss_pred             ECCCCEE---EE-------------CCC--cEeeCCEEEECCCCCcCCC
Confidence            6432222   22             123  3689999999999998753

>PRK06185 hypothetical protein; Provisional

Probab=98.12  E-value=5e-05  Score=64.04  Aligned_cols=33  Identities=18%  Similarity=0.286  Sum_probs=29.9

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      -+|+|||||.+|+-+|..|++.|. +|+|+++++
T Consensus         7 ~dV~IvGgG~~Gl~~A~~La~~G~-~v~liE~~~   39 (407)
T PRK06185          7 TDCCIVGGGPAGMMLGLLLARAGV-DVTVLEKHA   39 (407)
T ss_pred             ccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCC
Confidence            359999999999999999999997 699999864

>PRK06834 hypothetical protein; Provisional

Probab=98.11  E-value=4.4e-05  Score=66.42  Aligned_cols=32  Identities=28%  Similarity=0.394  Sum_probs=29.7

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      +|+|||||.+|+-+|..|++.|. +|+++++++
T Consensus         5 dVlIVGaGp~Gl~lA~~La~~G~-~v~vlEr~~   36 (488)
T PRK06834          5 AVVIAGGGPTGLMLAGELALAGV-DVAIVERRP   36 (488)
T ss_pred             eEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Confidence            49999999999999999999998 699999865

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=98.10  E-value=2.7e-05  Score=71.80  Aligned_cols=95  Identities=14%  Similarity=0.097  Sum_probs=63.2

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCC---ceEEEEEeecCCc-CC----C-----CHHHH-----HHHHHcCcEEEeCCcce
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGA---NKVLVVFRKGCTN-IR----A-----VPEEV-----QLAWEEKCEFLPFMSPV  131 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~---~~V~lv~r~~~~~-~~----~-----~~~~~-----~~~~~~gv~~~~~~~~~  131 (183)
                      +||||||+|+.|+.+|..|.+++.   -+|+++.+++... .+    .     ..+++     ..+.+.||+++.+..+.
T Consensus         4 ~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~~~~~~~~~~l~~~~~~~~~~~gI~~~~g~~V~   83 (847)
T PRK14989          4 VRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSSYFSHHTAEELSLVREGFYEKHGIKVLVGERAI   83 (847)
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchHhHcCCCHHHccCCCHHHHHhCCCEEEcCCEEE
Confidence            479999999999999999976531   2699998876521 00    0     01111     23456789999988887


Q ss_pred             EEEccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccccccCC
Q psy16200        132 QVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDN  182 (183)
Q Consensus       132 ~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~  182 (183)
                      ++..+ .++  |..             .+|  .++.+|.||+|+|..|...
T Consensus        84 ~Id~~-~~~--V~~-------------~~G--~~i~yD~LVIATGs~p~~p  116 (847)
T PRK14989         84 TINRQ-EKV--IHS-------------SAG--RTVFYDKLIMATGSYPWIP  116 (847)
T ss_pred             EEeCC-CcE--EEE-------------CCC--cEEECCEEEECCCCCcCCC
Confidence            77542 221  222             123  3689999999999998643

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=98.10  E-value=6.7e-06  Score=70.79  Aligned_cols=86  Identities=17%  Similarity=0.196  Sum_probs=57.8

Q ss_pred             CCcceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCCc------CCC---CHH----HHHHHHHcCcEEEeCCcceEE
Q psy16200         67 ILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTN------IRA---VPE----EVQLAWEEKCEFLPFMSPVQV  133 (183)
Q Consensus        67 ~~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~~------~~~---~~~----~~~~~~~~gv~~~~~~~~~~i  133 (183)
                      ..+++|+|||||..|+.+|..|++.|. +|+++++.+...      .|.   ..+    ....+.+.|+++++++.+.. 
T Consensus       138 ~~~~~VvIIGgGpaGl~aA~~l~~~g~-~V~lie~~~~~gG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~-  215 (457)
T PRK11749        138 KTGKKVAVIGAGPAGLTAAHRLARKGY-DVTIFEARDKAGGLLRYGIPEFRLPKDIVDREVERLLKLGVEIRTNTEVGR-  215 (457)
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEccCCCCCcEeeccCCCccCCHHHHHHHHHHHHHcCCEEEeCCEECC-
Confidence            345679999999999999999999996 799999865420      111   111    22345667899887765411 


Q ss_pred             EccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEccccc
Q psy16200        134 DVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGST  178 (183)
Q Consensus       134 ~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~  178 (183)
                           .   +++              .+  ..+.+|.||+|+|..
T Consensus       216 -----~---v~~--------------~~--~~~~~d~vvlAtGa~  236 (457)
T PRK11749        216 -----D---ITL--------------DE--LRAGYDAVFIGTGAG  236 (457)
T ss_pred             -----c---cCH--------------HH--HHhhCCEEEEccCCC
Confidence                 0   111              01  126789999999985

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=98.08  E-value=4.9e-05  Score=63.89  Aligned_cols=32  Identities=22%  Similarity=0.399  Sum_probs=29.7

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      +|+|||||..|+-+|..|++.|. +|+++++.+
T Consensus         8 dV~IvGaG~aGl~~A~~La~~G~-~v~liE~~~   39 (392)
T PRK08773          8 DAVIVGGGVVGAACALALADAGL-SVALVEGRE   39 (392)
T ss_pred             CEEEECcCHHHHHHHHHHhcCCC-EEEEEeCCC
Confidence            59999999999999999999997 699999864

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=98.07  E-value=2.4e-05  Score=66.15  Aligned_cols=35  Identities=20%  Similarity=0.301  Sum_probs=30.6

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcC--CceEEEEEeecCC
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCG--ANKVLVVFRKGCT  105 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G--~~~V~lv~r~~~~  105 (183)
                      ++|||+|||+-|+.+|..|.+.-  + +|++|.|++..
T Consensus         4 ~~iVIlGgGfgGl~~a~~l~~~~~~~-~itLVd~~~~h   40 (405)
T COG1252           4 KRIVILGGGFGGLSAAKRLARKLPDV-EITLVDRRDYH   40 (405)
T ss_pred             ceEEEECCcHHHHHHHHHhhhcCCCC-cEEEEeCCCcc
Confidence            57999999999999999999874  6 59999998764

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=98.06  E-value=8e-06  Score=70.93  Aligned_cols=85  Identities=22%  Similarity=0.231  Sum_probs=57.8

Q ss_pred             CcceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCCc------CCC---CH----HHHHHHHHcCcEEEeCCcceEEE
Q psy16200         68 LKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTN------IRA---VP----EEVQLAWEEKCEFLPFMSPVQVD  134 (183)
Q Consensus        68 ~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~~------~~~---~~----~~~~~~~~~gv~~~~~~~~~~i~  134 (183)
                      .+++|+|||+|..|+.+|.+|++.|. +|+++++.+...      .|.   ..    ..++.+.+.||++++++.+..- 
T Consensus       142 ~~~~V~IIGaG~aGl~aA~~L~~~g~-~V~v~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~-  219 (485)
T TIGR01317       142 TGKKVAVVGSGPAGLAAADQLNRAGH-TVTVFEREDRCGGLLMYGIPNMKLDKAIVDRRIDLLSAEGIDFVTNTEIGVD-  219 (485)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCC-eEEEEecCCCCCceeeccCCCccCCHHHHHHHHHHHHhCCCEEECCCEeCCc-
Confidence            34679999999999999999999997 699999865320      121   11    1234456789999887765210 


Q ss_pred             ccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEccccc
Q psy16200        135 VKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGST  178 (183)
Q Consensus       135 ~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~  178 (183)
                           +   .                .......+|.||+|+|..
T Consensus       220 -----~---~----------------~~~~~~~~d~VilAtGa~  239 (485)
T TIGR01317       220 -----I---S----------------ADELKEQFDAVVLAGGAT  239 (485)
T ss_pred             -----c---C----------------HHHHHhhCCEEEEccCCC
Confidence                 0   0                011134689999999987

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=98.06  E-value=9.1e-05  Score=63.83  Aligned_cols=32  Identities=34%  Similarity=0.496  Sum_probs=29.2

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      .|+|||+|..|+-+|..+++.|+ +|.|+++.+
T Consensus         6 DVvVVG~G~aGl~AA~~aa~~G~-~V~vlEk~~   37 (466)
T PRK08274          6 DVLVIGGGNAALCAALAAREAGA-SVLLLEAAP   37 (466)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCC
Confidence            49999999999999999999998 699999754

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=98.04  E-value=8.7e-05  Score=62.51  Aligned_cols=34  Identities=21%  Similarity=0.271  Sum_probs=30.7

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC  104 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~  104 (183)
                      .+|+|||||..|+-+|..|++.|. +|+++++++.
T Consensus         3 ~dV~IvGaGpaGl~~A~~L~~~G~-~v~v~E~~~~   36 (392)
T PRK08243          3 TQVAIIGAGPAGLLLGQLLHLAGI-DSVVLERRSR   36 (392)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCC-CEEEEEcCCc
Confidence            359999999999999999999997 6999998763

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=98.03  E-value=1.7e-05  Score=68.61  Aligned_cols=87  Identities=18%  Similarity=0.203  Sum_probs=59.1

Q ss_pred             CcceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCCc------CCC---C----HHHHHHHHHcCcEEEeCCcceEEE
Q psy16200         68 LKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTN------IRA---V----PEEVQLAWEEKCEFLPFMSPVQVD  134 (183)
Q Consensus        68 ~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~~------~~~---~----~~~~~~~~~~gv~~~~~~~~~~i~  134 (183)
                      .+++|+|||+|..|+.+|.+|++.|. +|+++++.+...      +|.   .    ..+.+.+.+.|++++.++.+..- 
T Consensus       140 ~~~~V~IIG~GpaGl~aA~~l~~~G~-~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~-  217 (467)
T TIGR01318       140 TGKRVAVIGAGPAGLACADILARAGV-QVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEVGRD-  217 (467)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEeCCc-
Confidence            44679999999999999999999997 699998865320      121   1    12344567889999888654210 


Q ss_pred             ccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEccccccc
Q psy16200        135 VKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLL  180 (183)
Q Consensus       135 ~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~  180 (183)
                              +.+              .+  ....+|.||+|+|..+.
T Consensus       218 --------~~~--------------~~--~~~~~D~vilAtGa~~~  239 (467)
T TIGR01318       218 --------ISL--------------DD--LLEDYDAVFLGVGTYRS  239 (467)
T ss_pred             --------cCH--------------HH--HHhcCCEEEEEeCCCCC
Confidence                    111              00  12368999999998763

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=98.02  E-value=2.2e-05  Score=67.48  Aligned_cols=62  Identities=23%  Similarity=0.234  Sum_probs=44.7

Q ss_pred             CcceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCC------cCCC---CHH----HHHHHHHcCcEEEeCCcc
Q psy16200         68 LKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCT------NIRA---VPE----EVQLAWEEKCEFLPFMSP  130 (183)
Q Consensus        68 ~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~------~~~~---~~~----~~~~~~~~gv~~~~~~~~  130 (183)
                      .+++|+|||||..|+.+|..|+++|. +|+++++.+..      ..+.   ..+    ++..+.+.|++|+++..+
T Consensus       132 ~~~~V~IIG~G~aGl~aA~~l~~~G~-~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v  206 (449)
T TIGR01316       132 THKKVAVIGAGPAGLACASELAKAGH-SVTVFEALHKPGGVVTYGIPEFRLPKEIVVTEIKTLKKLGVTFRMNFLV  206 (449)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCC-cEEEEecCCCCCcEeeecCCCccCCHHHHHHHHHHHHhCCcEEEeCCcc
Confidence            34579999999999999999999997 69999986432      0121   111    223456788999888643

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=98.02  E-value=0.00011  Score=63.22  Aligned_cols=31  Identities=29%  Similarity=0.465  Sum_probs=28.9

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      .|+|||||..|+.+|..|+++|. +|+++++.
T Consensus         7 DvvVIGaGpaG~~aA~~la~~G~-~v~liE~~   37 (461)
T PRK05249          7 DLVVIGSGPAGEGAAMQAAKLGK-RVAVIERY   37 (461)
T ss_pred             cEEEECCCHHHHHHHHHHHhCCC-EEEEEecc
Confidence            49999999999999999999996 79999985

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=98.02  E-value=7.2e-05  Score=63.34  Aligned_cols=51  Identities=16%  Similarity=0.196  Sum_probs=35.4

Q ss_pred             HcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccccc
Q psy16200        119 EEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTL  179 (183)
Q Consensus       119 ~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p  179 (183)
                      +.|++|++++.++++..++++|+++.+..          ..+++...+.++.||+|+|-..
T Consensus       153 ~~gv~i~~~~~~~~Li~e~g~V~Gv~~~~----------~~~g~~~~i~A~aVIlAtGG~~  203 (417)
T PF00890_consen  153 EAGVDIRFNTRVTDLITEDGRVTGVVAEN----------PADGEFVRIKAKAVILATGGFG  203 (417)
T ss_dssp             HTTEEEEESEEEEEEEEETTEEEEEEEEE----------TTTCEEEEEEESEEEE----BG
T ss_pred             hcCeeeeccceeeeEEEeCCceeEEEEEE----------CCCCeEEEEeeeEEEeccCccc
Confidence            44678888888888776677888887742          1467778899999999999654

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>PRK10015 oxidoreductase; Provisional

Probab=98.01  E-value=8.4e-05  Score=63.61  Aligned_cols=32  Identities=38%  Similarity=0.427  Sum_probs=29.4

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      .|+|||||..|+-+|..|++.|. +|.+++|..
T Consensus         7 DViIVGgGpAG~~aA~~LA~~G~-~VlliEr~~   38 (429)
T PRK10015          7 DAIVVGAGVAGSVAALVMARAGL-DVLVIERGD   38 (429)
T ss_pred             CEEEECcCHHHHHHHHHHHhCCC-eEEEEecCC
Confidence            49999999999999999999997 699999854

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=98.01  E-value=4.6e-06  Score=71.27  Aligned_cols=93  Identities=29%  Similarity=0.387  Sum_probs=26.0

Q ss_pred             EEEEcCChhHHHHHHHHHHcCCceEEEEEeecCCc-----------CCCC------------------------------
Q psy16200         72 VIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTN-----------IRAV------------------------------  110 (183)
Q Consensus        72 VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~~-----------~~~~------------------------------  110 (183)
                      |||||||..|+-+|..+++.|+ +|.||++.+..-           ....                              
T Consensus         2 VVVvGgG~aG~~AAi~AAr~G~-~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~~~~   80 (428)
T PF12831_consen    2 VVVVGGGPAGVAAAIAAARAGA-KVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQEDRYG   80 (428)
T ss_dssp             EEEE--SHHHHHHHHHHHHTTS--EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST-------------
T ss_pred             EEEECccHHHHHHHHHHHHCCC-EEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhcccccccccc
Confidence            8999999999999999999997 699999854210           0000                              


Q ss_pred             --------HHH----H-HHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccc
Q psy16200        111 --------PEE----V-QLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGS  177 (183)
Q Consensus       111 --------~~~----~-~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~  177 (183)
                              +..    + +.+.+.|+++++++.+.++..++++|++|++..           ..| ..++.|+.+|-|+|.
T Consensus        81 ~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~-----------~~g-~~~i~A~~~IDaTG~  148 (428)
T PF12831_consen   81 WVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVET-----------KSG-RKEIRAKVFIDATGD  148 (428)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccc-----------ccc-ccccccccccccccc
Confidence                    000    0 012356899999999998887777888887742           123 678999999999983

>PRK06126 hypothetical protein; Provisional

Probab=98.00  E-value=0.0001  Score=64.78  Aligned_cols=33  Identities=27%  Similarity=0.411  Sum_probs=29.9

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      -+|+|||||.+|+-+|..|+++|. +|+|++|++
T Consensus         8 ~~VlIVGaGpaGL~~Al~La~~G~-~v~viEr~~   40 (545)
T PRK06126          8 TPVLIVGGGPVGLALALDLGRRGV-DSILVERKD   40 (545)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCC-cEEEEeCCC
Confidence            459999999999999999999998 699999854

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=97.99  E-value=8.1e-05  Score=63.65  Aligned_cols=32  Identities=38%  Similarity=0.422  Sum_probs=29.4

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      .|+|||||..|+-+|..|++.|. +|.+++|..
T Consensus         7 DViIVGaGpAG~~aA~~La~~G~-~V~llEr~~   38 (428)
T PRK10157          7 DAIIVGAGLAGSVAALVLAREGA-QVLVIERGN   38 (428)
T ss_pred             cEEEECcCHHHHHHHHHHHhCCC-eEEEEEcCC
Confidence            49999999999999999999997 699999864

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=97.99  E-value=9e-05  Score=57.61  Aligned_cols=105  Identities=23%  Similarity=0.318  Sum_probs=68.4

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCC---------cCCCC--H---H-----------------------
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCT---------NIRAV--P---E-----------------------  112 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~---------~~~~~--~---~-----------------------  112 (183)
                      -.|+|+|+|.+|+.+|.+|++.|. +|++++|+-..         .++..  .   .                       
T Consensus        31 sDViIVGaGPsGLtAAyyLAk~g~-kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ye~~e~g~~v~ds~  109 (262)
T COG1635          31 SDVIIVGAGPSGLTAAYYLAKAGL-KVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYEEEEDGYYVADSA  109 (262)
T ss_pred             ccEEEECcCcchHHHHHHHHhCCc-eEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCcceecCCceEEecHH
Confidence            349999999999999999999998 69999996421         01110  0   0                       


Q ss_pred             -----HHHHHHHcCcEEEeCCcceEEEccCC-cEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccccc
Q psy16200        113 -----EVQLAWEEKCEFLPFMSPVQVDVKDN-KIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTL  179 (183)
Q Consensus       113 -----~~~~~~~~gv~~~~~~~~~~i~~~~~-~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p  179 (183)
                           ....+.+.|.++.....+..+...++ +|+++.+.-.-....+  ...  ...+++++.||=|+|...
T Consensus       110 e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~--lhv--DPl~i~a~~VvDaTGHda  178 (262)
T COG1635         110 EFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAG--LHV--DPLTIRAKAVVDATGHDA  178 (262)
T ss_pred             HHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcc--ccc--CcceeeEEEEEeCCCCch
Confidence                 01123456888988899988766555 7888865311000000  001  123788999999999764

>PLN02463 lycopene beta cyclase

Probab=97.98  E-value=0.00011  Score=63.37  Aligned_cols=33  Identities=18%  Similarity=0.299  Sum_probs=29.8

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC  104 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~  104 (183)
                      +|+|||||..|+-+|..|++.|. +|.++++++.
T Consensus        30 DVvIVGaGpAGLalA~~La~~Gl-~V~liE~~~~   62 (447)
T PLN02463         30 DLVVVGGGPAGLAVAQQVSEAGL-SVCCIDPSPL   62 (447)
T ss_pred             eEEEECCCHHHHHHHHHHHHCCC-eEEEeccCcc
Confidence            59999999999999999999997 6999998653

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=97.98  E-value=9.7e-05  Score=64.91  Aligned_cols=33  Identities=30%  Similarity=0.406  Sum_probs=30.1

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      -+|+|||||.+|+-+|..|++.|. +|++++|++
T Consensus        11 ~dV~IVGaGp~Gl~lA~~L~~~G~-~v~v~Er~~   43 (538)
T PRK06183         11 TDVVIVGAGPVGLTLANLLGQYGV-RVLVLERWP   43 (538)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Confidence            359999999999999999999997 699999864

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=97.96  E-value=0.00014  Score=62.92  Aligned_cols=31  Identities=23%  Similarity=0.386  Sum_probs=28.8

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      +|+|||||..|+.+|..|+++|. +|+|+++.
T Consensus         6 dvvVIG~GpaG~~aA~~aa~~G~-~v~lie~~   36 (472)
T PRK05976          6 DLVIIGGGPGGYVAAIRAGQLGL-KTALVEKG   36 (472)
T ss_pred             cEEEECCCHHHHHHHHHHHhCCC-eEEEEEcc
Confidence            49999999999999999999996 79999974

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=97.95  E-value=3.8e-05  Score=72.10  Aligned_cols=61  Identities=20%  Similarity=0.162  Sum_probs=45.9

Q ss_pred             cceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCC--c----CCC---CH----HHHHHHHHcCcEEEeCCcc
Q psy16200         69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCT--N----IRA---VP----EEVQLAWEEKCEFLPFMSP  130 (183)
Q Consensus        69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~--~----~~~---~~----~~~~~~~~~gv~~~~~~~~  130 (183)
                      +++|+|||||..|+.+|.+|++.|. +|+|+++....  .    +|.   ..    .+++.+.+.||+|+++..+
T Consensus       430 ~~kVaIIG~GPAGLsaA~~La~~G~-~VtV~E~~~~~GG~l~~gip~~rl~~e~~~~~~~~l~~~Gv~~~~~~~v  503 (1006)
T PRK12775        430 LGKVAICGSGPAGLAAAADLVKYGV-DVTVYEALHVVGGVLQYGIPSFRLPRDIIDREVQRLVDIGVKIETNKVI  503 (1006)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCC-cEEEEecCCCCcceeeccCCccCCCHHHHHHHHHHHHHCCCEEEeCCcc
Confidence            4679999999999999999999997 69999986432  1    121   11    2345567889999988643

>PRK08163 salicylate hydroxylase; Provisional

Probab=97.95  E-value=0.00014  Score=61.07  Aligned_cols=34  Identities=24%  Similarity=0.318  Sum_probs=30.9

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC  104 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~  104 (183)
                      .+|+|||||..|+-+|..|++.|. +|++++|++.
T Consensus         5 ~~V~IvGaGiaGl~~A~~L~~~g~-~v~v~Er~~~   38 (396)
T PRK08163          5 TPVLIVGGGIGGLAAALALARQGI-KVKLLEQAAE   38 (396)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCC-cEEEEeeCcc
Confidence            569999999999999999999998 6999998753

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=97.95  E-value=0.0001  Score=63.15  Aligned_cols=68  Identities=16%  Similarity=0.222  Sum_probs=48.5

Q ss_pred             CcceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCCc---------CCCCH-------HHHHH-HHHcCcEEEeCCcc
Q psy16200         68 LKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTN---------IRAVP-------EEVQL-AWEEKCEFLPFMSP  130 (183)
Q Consensus        68 ~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~~---------~~~~~-------~~~~~-~~~~gv~~~~~~~~  130 (183)
                      ..++++|||||..|+++|..|+..|. +|+||++++...         +|..+       ..+.. ....++++++.+.+
T Consensus       123 v~~svLVIGGGvAGitAAl~La~~G~-~v~LVEKepsiGGrmak~~k~FP~~dcs~C~LaP~m~~v~~hp~i~l~TyaeV  201 (622)
T COG1148         123 VSKSVLVIGGGVAGITAALELADMGF-KVYLVEKEPSIGGRMAKLNKTFPTNDCSICILAPKMVEVSNHPNIELITYAEV  201 (622)
T ss_pred             hccceEEEcCcHHHHHHHHHHHHcCC-eEEEEecCCcccccHHhhhccCCCcccchhhccchhhhhccCCceeeeeeeee
Confidence            45679999999999999999999998 699999876421         12110       01111 23456888888888


Q ss_pred             eEEEcc
Q psy16200        131 VQVDVK  136 (183)
Q Consensus       131 ~~i~~~  136 (183)
                      .++.+.
T Consensus       202 ~ev~G~  207 (622)
T COG1148         202 EEVSGS  207 (622)
T ss_pred             eeeccc
Confidence            887653

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=97.95  E-value=6.4e-05  Score=64.21  Aligned_cols=95  Identities=13%  Similarity=0.056  Sum_probs=67.2

Q ss_pred             EEEEcCChhHHHHH-HHHH----HcCCceEEEEEeecCCcCCCCH---HHHHHHHHcCcEEEeCCcceEEEccCCcEEEE
Q psy16200         72 VIVLGAGDTAFDCA-TSAL----RCGANKVLVVFRKGCTNIRAVP---EEVQLAWEEKCEFLPFMSPVQVDVKDNKIAGM  143 (183)
Q Consensus        72 VvViGgG~~g~e~A-~~l~----~~G~~~V~lv~r~~~~~~~~~~---~~~~~~~~~gv~~~~~~~~~~i~~~~~~v~~v  143 (183)
                      =+|++.+.+|+|.+ ..+.    ++|+ +|+++.+.+.. ++...   .....+.+.|+.++++..+.++..+++++..+
T Consensus       218 ~~V~~PavIGle~a~~v~~~L~~~LG~-~V~~vp~~pps-lpG~rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~~~V~~v  295 (422)
T PRK05329        218 EAVLLPAVLGLDDDAAVLAELEEALGC-PVFELPTLPPS-VPGLRLQNALRRAFERLGGRIMPGDEVLGAEFEGGRVTAV  295 (422)
T ss_pred             CEEEECceecCCChHHHHHHHHHHHCC-CEEEeCCCCCC-CchHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEE
Confidence            47789999999998 6665    5797 69999765542 33321   11234567899999999999987655555533


Q ss_pred             EEEEeeecCCCCeecCCCceEEEECCEEEEcccccccC
Q psy16200        144 QFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLD  181 (183)
Q Consensus       144 ~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~  181 (183)
                      ..             ..++...+.+|.||+|+|+.++.
T Consensus       296 ~~-------------~~g~~~~i~AD~VVLAtGrf~s~  320 (422)
T PRK05329        296 WT-------------RNHGDIPLRARHFVLATGSFFSG  320 (422)
T ss_pred             Ee-------------eCCceEEEECCEEEEeCCCcccC
Confidence            21             23456689999999999987653

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.95  E-value=0.00014  Score=62.86  Aligned_cols=32  Identities=34%  Similarity=0.483  Sum_probs=29.3

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      .|+|||||..|+.+|..++++|. +|+|+++.+
T Consensus         6 DvvVIG~GpaG~~aA~~aa~~G~-~V~lie~~~   37 (471)
T PRK06467          6 QVVVLGAGPAGYSAAFRAADLGL-ETVCVERYS   37 (471)
T ss_pred             eEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Confidence            49999999999999999999997 699999853

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=97.95  E-value=1.7e-05  Score=68.58  Aligned_cols=62  Identities=26%  Similarity=0.276  Sum_probs=44.8

Q ss_pred             CcceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCCc------CCC---CH----HHHHHHHHcCcEEEeCCcc
Q psy16200         68 LKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTN------IRA---VP----EEVQLAWEEKCEFLPFMSP  130 (183)
Q Consensus        68 ~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~~------~~~---~~----~~~~~~~~~gv~~~~~~~~  130 (183)
                      .+++|+|||+|..|+.+|.+|++.|. +|+++++.+...      .|.   ..    ...+.+.+.|+++++++.+
T Consensus       142 ~~~~VvIIGaGpAGl~aA~~l~~~G~-~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~gv~~~~~~~v  216 (471)
T PRK12810        142 TGKKVAVVGSGPAGLAAADQLARAGH-KVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAEGIEFRTNVEV  216 (471)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCC-cEEEEecCCCCCceeeecCCcccCCHHHHHHHHHHHHhCCcEEEeCCEE
Confidence            34679999999999999999999997 699999865320      111   11    1234456778988887654

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=97.94  E-value=0.00014  Score=61.21  Aligned_cols=32  Identities=22%  Similarity=0.238  Sum_probs=28.8

Q ss_pred             eEEEEcCChhHHHHHHHHHHcC--CceEEEEEeec
Q psy16200         71 TVIVLGAGDTAFDCATSALRCG--ANKVLVVFRKG  103 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G--~~~V~lv~r~~  103 (183)
                      +|+|||||..|+-+|..|++.|  . +|+|+++++
T Consensus         3 dv~IvGaG~aGl~~A~~L~~~g~g~-~v~liE~~~   36 (403)
T PRK07333          3 DVVIAGGGYVGLALAVALKQAAPHL-PVTVVDAAP   36 (403)
T ss_pred             CEEEECccHHHHHHHHHHhcCCCCC-EEEEEeCCC
Confidence            3999999999999999999985  6 699999864

>PRK07588 hypothetical protein; Provisional

Probab=97.93  E-value=0.00013  Score=61.27  Aligned_cols=33  Identities=24%  Similarity=0.142  Sum_probs=30.0

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC  104 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~  104 (183)
                      +|+|||||..|+-+|..|++.|. +|+++++++.
T Consensus         2 ~V~IVGgG~aGl~~A~~L~~~G~-~v~v~E~~~~   34 (391)
T PRK07588          2 KVAISGAGIAGPTLAYWLRRYGH-EPTLIERAPE   34 (391)
T ss_pred             eEEEECccHHHHHHHHHHHHCCC-ceEEEeCCCC
Confidence            59999999999999999999998 6999998653

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=97.91  E-value=6.5e-05  Score=64.31  Aligned_cols=32  Identities=16%  Similarity=0.339  Sum_probs=29.2

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      .|+|||||..|+.+|..|+++|. +|+|+++.+
T Consensus         5 DvvVIGgGpaGl~aA~~la~~g~-~V~lie~~~   36 (441)
T PRK08010          5 QAVIIGFGKAGKTLAVTLAKAGW-RVALIEQSN   36 (441)
T ss_pred             CEEEECCCHhHHHHHHHHHHCCC-eEEEEcCCC
Confidence            49999999999999999999996 699999863

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=97.90  E-value=0.00022  Score=60.35  Aligned_cols=33  Identities=27%  Similarity=0.425  Sum_probs=29.8

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC  104 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~  104 (183)
                      .|+|||||..|+-+|..|++.|. +|.+++++..
T Consensus         5 DVvIVGaGPAGs~aA~~la~~G~-~VlvlEk~~~   37 (396)
T COG0644           5 DVVIVGAGPAGSSAARRLAKAGL-DVLVLEKGSE   37 (396)
T ss_pred             eEEEECCchHHHHHHHHHHHcCC-eEEEEecCCC
Confidence            39999999999999999999997 6999998543

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=97.90  E-value=5.9e-05  Score=70.42  Aligned_cols=59  Identities=25%  Similarity=0.234  Sum_probs=42.4

Q ss_pred             cceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCC------cCCCC---HH----HHHHHHHcCcEEEeCC
Q psy16200         69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCT------NIRAV---PE----EVQLAWEEKCEFLPFM  128 (183)
Q Consensus        69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~------~~~~~---~~----~~~~~~~~gv~~~~~~  128 (183)
                      +++|+|||||..|+.+|.+|++.|. +|+|+++++..      ..|..   .+    +++.+...||+|+++.
T Consensus       537 ~kkVaIIGGGPAGLSAA~~LAr~G~-~VTV~Ek~~~lGG~l~~~IP~~rlp~e~l~~~ie~l~~~GVe~~~g~  608 (1012)
T TIGR03315       537 AHKVAVIGAGPAGLSAGYFLARAGH-PVTVFEKKEKPGGVVKNIIPEFRISAESIQKDIELVKFHGVEFKYGC  608 (1012)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-eEEEEecccccCceeeecccccCCCHHHHHHHHHHHHhcCcEEEEec
Confidence            3569999999999999999999997 69999986431      01211   11    2334566788888774

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=97.90  E-value=8.6e-05  Score=65.59  Aligned_cols=92  Identities=18%  Similarity=0.265  Sum_probs=58.2

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCC-c------C---CC----CHHH-HH----HHHHcCcEEEeCCcce
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCT-N------I---RA----VPEE-VQ----LAWEEKCEFLPFMSPV  131 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~-~------~---~~----~~~~-~~----~~~~~gv~~~~~~~~~  131 (183)
                      .|+|||||..|+.+|.+|++.|. +|+|+++.... .      .   |.    ...+ +.    .+...|++++ +..+.
T Consensus         6 DVvIIGgGpAGL~AA~~lar~g~-~V~liE~~~~GG~~~~~~~i~~~pg~~~~~~~~l~~~l~~~~~~~gv~~~-~~~V~   83 (555)
T TIGR03143         6 DLIIIGGGPAGLSAGIYAGRAKL-DTLIIEKDDFGGQITITSEVVNYPGILNTTGPELMQEMRQQAQDFGVKFL-QAEVL   83 (555)
T ss_pred             cEEEECCCHHHHHHHHHHHHCCC-CEEEEecCCCCceEEeccccccCCCCcCCCHHHHHHHHHHHHHHcCCEEe-ccEEE
Confidence            49999999999999999999997 69999975321 0      0   11    1111 11    2345688875 44555


Q ss_pred             EEEccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccccccC
Q psy16200        132 QVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLD  181 (183)
Q Consensus       132 ~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~  181 (183)
                      ++..+ +....++.             ..+   .+.+|.||+|+|..|..
T Consensus        84 ~i~~~-~~~~~V~~-------------~~g---~~~a~~lVlATGa~p~~  116 (555)
T TIGR03143        84 DVDFD-GDIKTIKT-------------ARG---DYKTLAVLIATGASPRK  116 (555)
T ss_pred             EEEec-CCEEEEEe-------------cCC---EEEEeEEEECCCCccCC
Confidence            55432 22211221             112   47889999999999864

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK05868 hypothetical protein; Validated

Probab=97.89  E-value=0.00015  Score=60.85  Aligned_cols=34  Identities=32%  Similarity=0.190  Sum_probs=30.6

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC  104 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~  104 (183)
                      ++|+|||||..|+-+|..|++.|. +|+++++++.
T Consensus         2 ~~V~IvGgG~aGl~~A~~L~~~G~-~v~viE~~~~   35 (372)
T PRK05868          2 KTVVVSGASVAGTAAAYWLGRHGY-SVTMVERHPG   35 (372)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCC
Confidence            369999999999999999999998 6999998654

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=97.89  E-value=3.3e-05  Score=70.50  Aligned_cols=88  Identities=17%  Similarity=0.035  Sum_probs=58.5

Q ss_pred             CcceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCC--c----CCC---CH----HHHHHHHHcCcEEEeCCcceEEE
Q psy16200         68 LKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCT--N----IRA---VP----EEVQLAWEEKCEFLPFMSPVQVD  134 (183)
Q Consensus        68 ~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~--~----~~~---~~----~~~~~~~~~gv~~~~~~~~~~i~  134 (183)
                      .+++|+|||||..|+.+|.+|++.|. +|+++++.+..  .    .|.   ..    .+++.+.+.||+|++++.+.   
T Consensus       430 ~~~~V~IIGaGpAGl~aA~~l~~~G~-~V~v~e~~~~~GG~l~~gip~~rlp~~~~~~~~~~l~~~gv~~~~~~~v~---  505 (752)
T PRK12778        430 NGKKVAVIGSGPAGLSFAGDLAKRGY-DVTVFEALHEIGGVLKYGIPEFRLPKKIVDVEIENLKKLGVKFETDVIVG---  505 (752)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCC-eEEEEecCCCCCCeeeecCCCCCCCHHHHHHHHHHHHHCCCEEECCCEEC---
Confidence            45679999999999999999999997 69999975321  1    121   11    12345677899998875431   


Q ss_pred             ccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccc-ccc
Q psy16200        135 VKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGS-TLL  180 (183)
Q Consensus       135 ~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~-~p~  180 (183)
                         ..+   ++.               ......+|.||+|+|. .|.
T Consensus       506 ---~~v---~~~---------------~l~~~~ydavvlAtGa~~~~  531 (752)
T PRK12778        506 ---KTI---TIE---------------ELEEEGFKGIFIASGAGLPN  531 (752)
T ss_pred             ---CcC---CHH---------------HHhhcCCCEEEEeCCCCCCC
Confidence               111   110               1123458999999997 454

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=97.88  E-value=0.00015  Score=64.38  Aligned_cols=30  Identities=40%  Similarity=0.627  Sum_probs=28.5

Q ss_pred             EEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         72 VIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        72 VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      |+|||||..|+++|..+++.|. +|.+++++
T Consensus         7 VIVVGGGpAG~eAA~~aAR~G~-kV~LiE~~   36 (618)
T PRK05192          7 VIVVGGGHAGCEAALAAARMGA-KTLLLTHN   36 (618)
T ss_pred             EEEECchHHHHHHHHHHHHcCC-cEEEEecc
Confidence            9999999999999999999997 69999986

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=97.88  E-value=4.1e-05  Score=65.42  Aligned_cols=33  Identities=21%  Similarity=0.233  Sum_probs=30.2

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC  104 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~  104 (183)
                      +|+|||||.+|+++|..|++.|. +|+|+++++.
T Consensus         2 ~VvVIGgGlAGleaA~~LAr~G~-~V~LiE~rp~   34 (433)
T TIGR00137         2 PVHVIGGGLAGSEAAWQLAQAGV-PVILYEMRPE   34 (433)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCC-cEEEEecccc
Confidence            59999999999999999999997 6999998764

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.88  E-value=0.00029  Score=62.39  Aligned_cols=31  Identities=26%  Similarity=0.370  Sum_probs=28.3

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      .|+|||+|..|+-+|..+++.|+ +|.|+++.
T Consensus         7 DVvVVG~G~AGl~AAl~Aae~G~-~V~lveK~   37 (566)
T PRK06452          7 DAVVIGGGLAGLMSAHEIASAGF-KVAVISKV   37 (566)
T ss_pred             cEEEECccHHHHHHHHHHHHCCC-cEEEEEcc
Confidence            49999999999999999999997 69999864

>PRK06475 salicylate hydroxylase; Provisional

Probab=97.87  E-value=0.00024  Score=60.03  Aligned_cols=33  Identities=21%  Similarity=0.327  Sum_probs=30.4

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      +||+|||||..|+-+|..|++.|. +|+++++++
T Consensus         3 ~~V~IvGgGiaGl~~A~~L~~~G~-~V~i~E~~~   35 (400)
T PRK06475          3 GSPLIAGAGVAGLSAALELAARGW-AVTIIEKAQ   35 (400)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCC-cEEEEecCC
Confidence            679999999999999999999998 699999864

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=97.87  E-value=2.7e-05  Score=69.86  Aligned_cols=62  Identities=23%  Similarity=0.231  Sum_probs=46.2

Q ss_pred             CcceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCCc------CCCC---H----HHHHHHHHcCcEEEeCCcc
Q psy16200         68 LKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTN------IRAV---P----EEVQLAWEEKCEFLPFMSP  130 (183)
Q Consensus        68 ~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~~------~~~~---~----~~~~~~~~~gv~~~~~~~~  130 (183)
                      .+++|+|||+|..|+.+|..|++.|. +|+++++.+...      .|..   .    .+.+.+.+.|+++++++.+
T Consensus       309 ~~kkVaIIG~GpaGl~aA~~L~~~G~-~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v  383 (639)
T PRK12809        309 RSEKVAVIGAGPAGLGCADILARAGV-QVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEI  383 (639)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCC-cEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCcc
Confidence            35679999999999999999999997 699999876410      1111   1    1334567789999988765

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=97.87  E-value=0.00031  Score=62.17  Aligned_cols=30  Identities=27%  Similarity=0.479  Sum_probs=27.8

Q ss_pred             EEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         72 VIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        72 VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      |+|||+|..|+-+|..+++.|+ +|.|+++.
T Consensus         2 VlVVG~G~AGl~AA~~aae~G~-~V~lleK~   31 (566)
T TIGR01812         2 VVIVGAGLAGLRAAVEAAKAGL-NTAVISKV   31 (566)
T ss_pred             EEEECccHHHHHHHHHHHHCCC-cEEEEecc
Confidence            8999999999999999999997 69999874

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=97.87  E-value=0.00019  Score=63.15  Aligned_cols=33  Identities=24%  Similarity=0.362  Sum_probs=30.1

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      .+|+|||||..|+-+|..|+++|. +|+++++++
T Consensus        24 ~dVlIVGaGpaGl~lA~~L~~~G~-~v~viE~~~   56 (547)
T PRK08132         24 HPVVVVGAGPVGLALAIDLAQQGV-PVVLLDDDD   56 (547)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCC-cEEEEeCCC
Confidence            459999999999999999999998 699999865

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=97.86  E-value=0.00032  Score=59.99  Aligned_cols=30  Identities=33%  Similarity=0.538  Sum_probs=28.0

Q ss_pred             EEEEcCChhHHHHHHHHHHcC-CceEEEEEee
Q psy16200         72 VIVLGAGDTAFDCATSALRCG-ANKVLVVFRK  102 (183)
Q Consensus        72 VvViGgG~~g~e~A~~l~~~G-~~~V~lv~r~  102 (183)
                      |+|||+|..|+-+|..+++.| + +|+|+++.
T Consensus         2 VvVVG~G~AGl~AA~~aa~~G~~-~V~vlEk~   32 (439)
T TIGR01813         2 VVVVGSGFAGLSAALSAKKAGAA-NVVLLEKM   32 (439)
T ss_pred             EEEECCCHHHHHHHHHHHHcCCc-cEEEEecC
Confidence            899999999999999999999 8 69999974

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>PRK09126 hypothetical protein; Provisional

Probab=97.86  E-value=0.00021  Score=59.87  Aligned_cols=33  Identities=30%  Similarity=0.455  Sum_probs=30.1

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC  104 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~  104 (183)
                      +|+|||||..|+-+|..|++.|. +|+|+++++.
T Consensus         5 dviIvGgG~aGl~~A~~L~~~G~-~v~v~E~~~~   37 (392)
T PRK09126          5 DIVVVGAGPAGLSFARSLAGSGL-KVTLIERQPL   37 (392)
T ss_pred             cEEEECcCHHHHHHHHHHHhCCC-cEEEEeCCCc
Confidence            49999999999999999999997 6999998753

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=97.86  E-value=0.00019  Score=60.53  Aligned_cols=31  Identities=29%  Similarity=0.439  Sum_probs=29.3

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      +|+|||||.+|+-+|..|++.|. +|+|++++
T Consensus         4 dV~IvGaG~aGl~lA~~L~~~G~-~V~l~E~~   34 (387)
T COG0654           4 DVAIVGAGPAGLALALALARAGL-DVTLLERA   34 (387)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCC-cEEEEccC
Confidence            49999999999999999999997 69999997

>PRK11445 putative oxidoreductase; Provisional

Probab=97.86  E-value=0.00028  Score=58.70  Aligned_cols=31  Identities=23%  Similarity=0.239  Sum_probs=28.3

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      +|+|||||..|+-+|..|++. . +|++++|++
T Consensus         3 dV~IvGaGpaGl~~A~~La~~-~-~V~liE~~~   33 (351)
T PRK11445          3 DVAIIGLGPAGSALARLLAGK-M-KVIAIDKKH   33 (351)
T ss_pred             eEEEECCCHHHHHHHHHHhcc-C-CEEEEECCC
Confidence            499999999999999999998 7 699999875

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.84  E-value=0.00034  Score=62.85  Aligned_cols=30  Identities=30%  Similarity=0.306  Sum_probs=27.7

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEe
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFR  101 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r  101 (183)
                      .|+|||+|..|+-+|..+++.|+ +|.|++.
T Consensus        37 DVlVVG~G~AGl~AAi~Aae~G~-~VilieK   66 (640)
T PRK07573         37 DVIVVGTGLAGASAAATLGELGY-NVKVFCY   66 (640)
T ss_pred             CEEEECccHHHHHHHHHHHHcCC-cEEEEec
Confidence            49999999999999999999998 6999975

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=97.83  E-value=4.9e-05  Score=68.34  Aligned_cols=62  Identities=19%  Similarity=0.148  Sum_probs=45.2

Q ss_pred             CcceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCCc------CCCC-------HHHHHHHHHcCcEEEeCCcc
Q psy16200         68 LKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTN------IRAV-------PEEVQLAWEEKCEFLPFMSP  130 (183)
Q Consensus        68 ~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~~------~~~~-------~~~~~~~~~~gv~~~~~~~~  130 (183)
                      .+++|+|||||..|+.+|..|++.|. +|+++++.....      .|..       ..+++.+.+.|+++++++.+
T Consensus       192 ~~k~VaIIGaGpAGl~aA~~La~~G~-~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v  266 (652)
T PRK12814        192 SGKKVAIIGAGPAGLTAAYYLLRKGH-DVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNTVF  266 (652)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-cEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeCCcc
Confidence            34579999999999999999999997 699999865320      1111       12344567788988887653

>TIGR02028 ChlP geranylgeranyl reductase

Probab=97.81  E-value=0.00038  Score=58.98  Aligned_cols=32  Identities=25%  Similarity=0.391  Sum_probs=29.4

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      +|+|||||..|+-+|..|++.|. +|.+++++.
T Consensus         2 ~VvIVGaGPAG~~aA~~la~~G~-~V~llE~~~   33 (398)
T TIGR02028         2 RVAVVGGGPAGASAAETLASAGI-QTFLLERKP   33 (398)
T ss_pred             eEEEECCcHHHHHHHHHHHhCCC-cEEEEecCC
Confidence            49999999999999999999997 699999864

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=97.81  E-value=0.00029  Score=54.72  Aligned_cols=105  Identities=24%  Similarity=0.315  Sum_probs=63.3

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCCc---------CCC------CHH-----------------------
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTN---------IRA------VPE-----------------------  112 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~~---------~~~------~~~-----------------------  112 (183)
                      .|+|||+|..|+-+|.+|++.|. +|.+++++...-         ++.      ...                       
T Consensus        19 DV~IVGaGpaGl~aA~~La~~g~-kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~y~~~~~g~~v~d~~~   97 (230)
T PF01946_consen   19 DVAIVGAGPAGLTAAYYLAKAGL-KVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIPYEEYGDGYYVADSVE   97 (230)
T ss_dssp             SEEEE--SHHHHHHHHHHHHHTS--EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT---EE-SSEEEES-HHH
T ss_pred             CEEEECCChhHHHHHHHHHHCCC-eEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCceeEEeCCeEEEEcHHH
Confidence            49999999999999999999997 699999854210         000      000                       


Q ss_pred             ----HHHHHHHcCcEEEeCCcceEEEccC-CcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEccccccc
Q psy16200        113 ----EVQLAWEEKCEFLPFMSPVQVDVKD-NKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLL  180 (183)
Q Consensus       113 ----~~~~~~~~gv~~~~~~~~~~i~~~~-~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~  180 (183)
                          .+..+.+.|+++.....+..+...+ ++|.++.+.-.-....+.  +.  -..++.+..||=|+|...+
T Consensus        98 ~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~gl--Hv--DPl~i~ak~ViDaTGHda~  166 (230)
T PF01946_consen   98 FTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGL--HV--DPLTIRAKVVIDATGHDAE  166 (230)
T ss_dssp             HHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT----T---B-EEEEESEEEE---SSSS
T ss_pred             HHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhc--CC--CcceEEEeEEEeCCCCchH
Confidence                1122345789999999988876544 789988763210000100  01  1358899999999998754

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=97.81  E-value=0.00016  Score=62.14  Aligned_cols=30  Identities=33%  Similarity=0.430  Sum_probs=28.1

Q ss_pred             EEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         72 VIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        72 VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      |+|||||.-|+.+|..++++|. +|+|+++.
T Consensus         5 vvVIG~GpaG~~aA~~aa~~G~-~V~lie~~   34 (446)
T TIGR01424         5 LFVIGAGSGGVRAARLAANHGA-KVAIAEEP   34 (446)
T ss_pred             EEEECCCHHHHHHHHHHHhCCC-cEEEEecC
Confidence            9999999999999999999996 69999973

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PLN02852 ferredoxin-NADP+ reductase

Probab=97.80  E-value=9.3e-05  Score=64.37  Aligned_cols=36  Identities=31%  Similarity=0.339  Sum_probs=31.3

Q ss_pred             CcceEEEEcCChhHHHHHHHHHH--cCCceEEEEEeecC
Q psy16200         68 LKGTVIVLGAGDTAFDCATSALR--CGANKVLVVFRKGC  104 (183)
Q Consensus        68 ~~~~VvViGgG~~g~e~A~~l~~--~G~~~V~lv~r~~~  104 (183)
                      .+++|+|||+|..|+.+|..|++  .|. +|+|+++.+.
T Consensus        25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~-~Vtv~E~~p~   62 (491)
T PLN02852         25 EPLHVCVVGSGPAGFYTADKLLKAHDGA-RVDIIERLPT   62 (491)
T ss_pred             CCCcEEEECccHHHHHHHHHHHhhCCCC-eEEEEecCCC
Confidence            34679999999999999999986  687 6999999764

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.79  E-value=0.00027  Score=60.79  Aligned_cols=32  Identities=38%  Similarity=0.517  Sum_probs=29.1

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      +|+|||||..|+.+|..|+++|. +|.++++..
T Consensus         6 DvvVIGaGpaG~~aA~~aa~~G~-~V~liE~~~   37 (462)
T PRK06416          6 DVIVIGAGPGGYVAAIRAAQLGL-KVAIVEKEK   37 (462)
T ss_pred             cEEEECCCHHHHHHHHHHHHCCC-cEEEEeccc
Confidence            49999999999999999999996 799999753

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=97.79  E-value=0.00037  Score=58.67  Aligned_cols=31  Identities=26%  Similarity=0.457  Sum_probs=28.8

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      +|+|||||..|+-+|..|++.|. +|.+++++
T Consensus         2 DVvIVGaGpAG~~aA~~La~~G~-~V~l~E~~   32 (388)
T TIGR02023         2 DVAVIGGGPSGATAAETLARAGI-ETILLERA   32 (388)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCC-cEEEEECC
Confidence            39999999999999999999997 69999986

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>PRK14694 putative mercuric reductase; Provisional

Probab=97.79  E-value=0.00038  Score=60.15  Aligned_cols=31  Identities=32%  Similarity=0.508  Sum_probs=28.8

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      +|+|||||..|+.+|..|+++|. +|.+|++.
T Consensus         8 dviVIGaG~aG~~aA~~l~~~g~-~v~lie~~   38 (468)
T PRK14694          8 HIAVIGSGGSAMAAALKATERGA-RVTLIERG   38 (468)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCC-cEEEEEcc
Confidence            49999999999999999999997 79999975

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=97.78  E-value=3.3e-05  Score=69.42  Aligned_cols=62  Identities=24%  Similarity=0.208  Sum_probs=45.0

Q ss_pred             CcceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCC--c----CCCC---H----HHHHHHHHcCcEEEeCCcc
Q psy16200         68 LKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCT--N----IRAV---P----EEVQLAWEEKCEFLPFMSP  130 (183)
Q Consensus        68 ~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~--~----~~~~---~----~~~~~~~~~gv~~~~~~~~  130 (183)
                      .+++|+|||+|..|+.+|.+|++.|. +|+++++.+..  .    .|..   .    .+++.+.+.|++|++++.+
T Consensus       326 ~~~~VaIIGaGpAGLsaA~~L~~~G~-~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v  400 (654)
T PRK12769        326 SDKRVAIIGAGPAGLACADVLARNGV-AVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEV  400 (654)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCCEe
Confidence            35679999999999999999999997 69999986431  0    1211   1    1234456779999887654

>PRK07190 hypothetical protein; Provisional

Probab=97.78  E-value=0.00036  Score=60.72  Aligned_cols=33  Identities=27%  Similarity=0.564  Sum_probs=29.8

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC  104 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~  104 (183)
                      +|+|||||.+|+-+|..|++.|. +|.++++.+.
T Consensus         7 dVlIVGAGPaGL~lA~~Lar~Gi-~V~llEr~~~   39 (487)
T PRK07190          7 DVVIIGAGPVGLMCAYLGQLCGL-NTVIVDKSDG   39 (487)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCC-CEEEEeCCCc
Confidence            49999999999999999999998 6999998653

>PRK06753 hypothetical protein; Provisional

Probab=97.77  E-value=0.00037  Score=58.05  Aligned_cols=33  Identities=21%  Similarity=0.293  Sum_probs=30.2

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC  104 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~  104 (183)
                      +|+|||||..|+-+|..|++.|. +|+|+++++.
T Consensus         2 ~V~IvGgG~aGl~~A~~L~~~g~-~v~v~E~~~~   34 (373)
T PRK06753          2 KIAIIGAGIGGLTAAALLQEQGH-EVKVFEKNES   34 (373)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCC-cEEEEecCCc
Confidence            59999999999999999999998 6999998753

>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=97.76  E-value=0.00037  Score=60.86  Aligned_cols=32  Identities=38%  Similarity=0.394  Sum_probs=29.2

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      .|+|||||.+|+-+|+.++.+|- +|.|+++.+
T Consensus        14 DviVIGGGitG~GiArDaA~RGl-~v~LvE~~D   45 (532)
T COG0578          14 DVIVIGGGITGAGIARDAAGRGL-KVALVEKGD   45 (532)
T ss_pred             CEEEECCchhhHHHHHHHHhCCC-eEEEEecCc
Confidence            49999999999999999999998 699999843

>PLN02985 squalene monooxygenase

Probab=97.75  E-value=0.0006  Score=59.76  Aligned_cols=32  Identities=31%  Similarity=0.336  Sum_probs=29.6

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      +|+|||||..|+-+|..|++.|. +|++++|..
T Consensus        45 DViIVGAG~aGlalA~aLa~~G~-~V~vlEr~~   76 (514)
T PLN02985         45 DVIIVGAGVGGSALAYALAKDGR-RVHVIERDL   76 (514)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCC-eEEEEECcC
Confidence            59999999999999999999996 799999864

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.75  E-value=0.00024  Score=61.37  Aligned_cols=31  Identities=42%  Similarity=0.537  Sum_probs=28.7

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      +|+|||||..|+.+|..|+++|. +|+|+++.
T Consensus         6 DvvIIG~GpaG~~AA~~aa~~G~-~V~lie~~   36 (466)
T PRK07818          6 DVVVLGAGPGGYVAAIRAAQLGL-KTAVVEKK   36 (466)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCC-eEEEEecC
Confidence            49999999999999999999996 69999974

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.74  E-value=0.00044  Score=59.78  Aligned_cols=31  Identities=29%  Similarity=0.476  Sum_probs=28.5

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      .|+|||+|.-|+.+|..++++|. +|+|++++
T Consensus         5 DvvVIG~GpaG~~AA~~aa~~G~-~V~liE~~   35 (466)
T PRK06115          5 DVVIIGGGPGGYNAAIRAGQLGL-KVACVEGR   35 (466)
T ss_pred             cEEEECCCHHHHHHHHHHHhCCC-eEEEEecC
Confidence            49999999999999999999996 79999963

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=97.74  E-value=5.3e-05  Score=66.96  Aligned_cols=63  Identities=21%  Similarity=0.127  Sum_probs=45.2

Q ss_pred             CCcceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCC------cCCC-------CHHHHHHHHHcCcEEEeCCcc
Q psy16200         67 ILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCT------NIRA-------VPEEVQLAWEEKCEFLPFMSP  130 (183)
Q Consensus        67 ~~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~------~~~~-------~~~~~~~~~~~gv~~~~~~~~  130 (183)
                      ..+++|+|||+|.+|+.+|..|+++|. +|+++++.+..      ..|.       ...+++.+.+.|++++.+..+
T Consensus       135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~-~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~  210 (564)
T PRK12771        135 DTGKRVAVIGGGPAGLSAAYHLRRMGH-AVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGVRV  210 (564)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCCEE
Confidence            345679999999999999999999998 69999875431      0111       122344567788888877543

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=97.71  E-value=0.00043  Score=58.41  Aligned_cols=32  Identities=22%  Similarity=0.271  Sum_probs=29.6

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      +|+|||||..|+-+|..|++.|. +|+++++.+
T Consensus         4 dV~IVGaG~aGl~~A~~L~~~G~-~v~viE~~~   35 (405)
T PRK05714          4 DLLIVGAGMVGSALALALQGSGL-EVLLLDGGP   35 (405)
T ss_pred             cEEEECccHHHHHHHHHHhcCCC-EEEEEcCCC
Confidence            49999999999999999999997 699999875

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=97.71  E-value=0.00071  Score=63.67  Aligned_cols=107  Identities=20%  Similarity=0.268  Sum_probs=63.8

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCC--cC-------CCC-HHH-----HHHHHHc-CcEEEeCCcceEE
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCT--NI-------RAV-PEE-----VQLAWEE-KCEFLPFMSPVQV  133 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~--~~-------~~~-~~~-----~~~~~~~-gv~~~~~~~~~~i  133 (183)
                      .+|+|||||..|+.+|..+++.|. +|+|+++.+..  ++       +.. ..+     .+++... ++.+++++.+..+
T Consensus       164 ~dVvIIGaGPAGLaAA~~aar~G~-~V~liD~~~~~GG~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~v~v~~~t~V~~i  242 (985)
T TIGR01372       164 CDVLVVGAGPAGLAAALAAARAGA-RVILVDEQPEAGGSLLSEAETIDGKPAADWAAATVAELTAMPEVTLLPRTTAFGY  242 (985)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCC-cEEEEecCCCCCCeeeccccccCCccHHHHHHHHHHHHhcCCCcEEEcCCEEEEE
Confidence            459999999999999999999997 69999975421  01       111 111     1223333 5999999888777


Q ss_pred             EccCCcEEEEEEEEeeecCCCCeec--CCCceEEEECCEEEEcccccccC
Q psy16200        134 DVKDNKIAGMQFNRTEQNEKGEWVE--DEEQRIKLKANYIISAFGSTLLD  181 (183)
Q Consensus       134 ~~~~~~v~~v~~~~~~~~~~~~~~~--~~g~~~~i~~D~Vi~a~G~~p~~  181 (183)
                      .. ++.+..+.  +.. +.-.....  ..+....+.+|.||+|+|..|..
T Consensus       243 ~~-~~~v~~v~--~~~-~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r~  288 (985)
T TIGR01372       243 YD-HNTVGALE--RVT-DHLDAPPKGVPRERLWRIRAKRVVLATGAHERP  288 (985)
T ss_pred             ec-CCeEEEEE--Eee-eccccccCCccccceEEEEcCEEEEcCCCCCcC
Confidence            53 33332121  110 00000000  01122368999999999987653

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=97.70  E-value=0.00047  Score=57.56  Aligned_cols=32  Identities=25%  Similarity=0.366  Sum_probs=29.5

Q ss_pred             EEEEcCChhHHHHHHHHHHcC-CceEEEEEeecC
Q psy16200         72 VIVLGAGDTAFDCATSALRCG-ANKVLVVFRKGC  104 (183)
Q Consensus        72 VvViGgG~~g~e~A~~l~~~G-~~~V~lv~r~~~  104 (183)
                      |+|||||..|+-+|..|++.| . +|+++++.+.
T Consensus         2 v~IvGaG~aGl~~A~~L~~~G~~-~v~v~E~~~~   34 (382)
T TIGR01984         2 VIIVGGGLVGLSLALALSRLGKI-KIALIEANSP   34 (382)
T ss_pred             EEEECccHHHHHHHHHHhcCCCc-eEEEEeCCCc
Confidence            899999999999999999999 8 6999998653

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=97.69  E-value=0.00053  Score=57.07  Aligned_cols=32  Identities=19%  Similarity=0.387  Sum_probs=29.7

Q ss_pred             EEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200         72 VIVLGAGDTAFDCATSALRCGANKVLVVFRKGC  104 (183)
Q Consensus        72 VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~  104 (183)
                      |+|||||..|+-+|..|++.|. +|++++|++.
T Consensus         2 ViIvGaG~aGl~~A~~L~~~G~-~v~v~Er~~~   33 (385)
T TIGR01988         2 IVIVGGGMVGLALALALARSGL-KIALIEATPA   33 (385)
T ss_pred             EEEECCCHHHHHHHHHHhcCCC-EEEEEeCCCc
Confidence            8999999999999999999997 7999999753

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>PRK07045 putative monooxygenase; Reviewed

Probab=97.69  E-value=0.00085  Score=56.31  Aligned_cols=33  Identities=27%  Similarity=0.217  Sum_probs=30.4

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC  104 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~  104 (183)
                      +|+|||||..|+-+|..|++.|. +|+|+++++.
T Consensus         7 ~V~IiGgGpaGl~~A~~L~~~G~-~v~v~E~~~~   39 (388)
T PRK07045          7 DVLINGSGIAGVALAHLLGARGH-SVTVVERAAR   39 (388)
T ss_pred             EEEEECCcHHHHHHHHHHHhcCC-cEEEEeCCCc
Confidence            59999999999999999999998 6999998764

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=97.68  E-value=0.00069  Score=61.10  Aligned_cols=31  Identities=26%  Similarity=0.368  Sum_probs=28.1

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      .|+|||+|..|+-+|..+++.|+ +|.|+++.
T Consensus         7 DVlVIG~G~AGl~AAi~Aae~G~-~VivleK~   37 (657)
T PRK08626          7 DALVIGAGLAGLRVAIAAAQRGL-DTIVLSLV   37 (657)
T ss_pred             cEEEECccHHHHHHHHHHHHcCC-CEEEEeCC
Confidence            39999999999999999999998 69999863

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=97.68  E-value=0.00068  Score=55.57  Aligned_cols=31  Identities=32%  Similarity=0.518  Sum_probs=26.0

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEe
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFR  101 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r  101 (183)
                      +|+|||||..|+-+|.++.+.+.+.+.|++.
T Consensus         5 DviIIG~GPAGl~AAiya~r~~l~~~li~~~   35 (305)
T COG0492           5 DVIIIGGGPAGLTAAIYAARAGLKVVLILEG   35 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCCcEEEEec
Confidence            4999999999999999999999743555554

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=97.68  E-value=0.00056  Score=57.40  Aligned_cols=32  Identities=19%  Similarity=0.233  Sum_probs=29.5

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      +|+|||||..|+-+|..|++.|. +|+++++++
T Consensus         7 dViIvGgG~aGl~~A~~La~~G~-~V~liE~~~   38 (391)
T PRK08020          7 DIAIVGGGMVGAALALGLAQHGF-SVAVLEHAA   38 (391)
T ss_pred             cEEEECcCHHHHHHHHHHhcCCC-EEEEEcCCC
Confidence            49999999999999999999997 699999864

>PRK06116 glutathione reductase; Validated

Probab=97.68  E-value=0.00032  Score=60.22  Aligned_cols=31  Identities=35%  Similarity=0.497  Sum_probs=28.7

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      .|+|||||..|+.+|..|+++|. +|+|+++.
T Consensus         6 DvvVIG~GpaG~~aA~~~a~~G~-~V~liE~~   36 (450)
T PRK06116          6 DLIVIGGGSGGIASANRAAMYGA-KVALIEAK   36 (450)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC-eEEEEecc
Confidence            49999999999999999999996 79999974

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=97.67  E-value=0.00092  Score=59.76  Aligned_cols=31  Identities=26%  Similarity=0.409  Sum_probs=28.2

Q ss_pred             eEEEEcCChhHHHHHHHHHHc--CCceEEEEEee
Q psy16200         71 TVIVLGAGDTAFDCATSALRC--GANKVLVVFRK  102 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~--G~~~V~lv~r~  102 (183)
                      .|+|||+|..|+-+|..+++.  |+ +|.|+++.
T Consensus        13 DVlVIG~G~AGl~AAi~Aae~~~G~-~V~lieK~   45 (608)
T PRK06854         13 DILIIGGGMAGCGAAFEAKEWAPDL-KVLIVEKA   45 (608)
T ss_pred             CEEEECcCHHHHHHHHHHHHhCCCC-eEEEEECC
Confidence            499999999999999999998  87 69999974

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=97.66  E-value=0.00074  Score=57.69  Aligned_cols=32  Identities=16%  Similarity=0.214  Sum_probs=28.7

Q ss_pred             eEEEEcCChhHHHHHHHHHHcC--CceEEEEEeec
Q psy16200         71 TVIVLGAGDTAFDCATSALRCG--ANKVLVVFRKG  103 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G--~~~V~lv~r~~  103 (183)
                      .|+|||||-+|+-+|..|.++.  . +|+|+++..
T Consensus         5 DvvIIGgGI~G~a~a~~Ls~~~p~~-~V~llEk~~   38 (429)
T COG0579           5 DVVIIGGGIMGAATAYELSEYEPDL-SVALLEKED   38 (429)
T ss_pred             eEEEECCcHHHHHHHHHHHHhCCCc-eEEEEEccC
Confidence            3999999999999999999997  5 799999843

>PRK07121 hypothetical protein; Validated

Probab=97.65  E-value=0.00061  Score=59.23  Aligned_cols=32  Identities=38%  Similarity=0.487  Sum_probs=29.0

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      .|+|||+|..|+-+|..+++.|+ +|.|+++.+
T Consensus        22 DVvVVGaG~AGl~AA~~aae~G~-~VillEK~~   53 (492)
T PRK07121         22 DVVVVGFGAAGACAAIEAAAAGA-RVLVLERAA   53 (492)
T ss_pred             CEEEECcCHHHHHHHHHHHHCCC-eEEEEeCCC
Confidence            49999999999999999999998 699999743

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=97.65  E-value=0.00068  Score=56.72  Aligned_cols=33  Identities=21%  Similarity=0.313  Sum_probs=30.2

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC  104 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~  104 (183)
                      +|+|||||..|+-+|..|++.|. +|+++++++.
T Consensus         7 dv~IvGgG~aGl~~A~~L~~~G~-~v~v~E~~~~   39 (388)
T PRK07608          7 DVVVVGGGLVGASLALALAQSGL-RVALLAPRAP   39 (388)
T ss_pred             CEEEECcCHHHHHHHHHHHhCCC-eEEEEecCCC
Confidence            59999999999999999999997 7999998754

>PRK06370 mercuric reductase; Validated

Probab=97.64  E-value=0.00047  Score=59.43  Aligned_cols=31  Identities=35%  Similarity=0.424  Sum_probs=28.9

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      .|+|||||..|+.+|..|+++|. +|+|+++.
T Consensus         7 DvvVIG~GpaG~~aA~~aa~~G~-~v~lie~~   37 (463)
T PRK06370          7 DAIVIGAGQAGPPLAARAAGLGM-KVALIERG   37 (463)
T ss_pred             cEEEECCCHHHHHHHHHHHhCCC-eEEEEecC
Confidence            49999999999999999999997 79999975

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=97.64  E-value=0.00042  Score=60.92  Aligned_cols=33  Identities=27%  Similarity=0.385  Sum_probs=26.9

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      |||+|||||..|+-.|..|.+.|. +|+++++++
T Consensus         2 krVaVIGaG~sGL~a~k~l~e~g~-~~~~fE~~~   34 (531)
T PF00743_consen    2 KRVAVIGAGPSGLAAAKNLLEEGL-EVTCFEKSD   34 (531)
T ss_dssp             -EEEEE--SHHHHHHHHHHHHTT--EEEEEESSS
T ss_pred             CEEEEECccHHHHHHHHHHHHCCC-CCeEEecCC
Confidence            679999999999999999999998 699999854

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=97.64  E-value=0.00095  Score=56.32  Aligned_cols=34  Identities=18%  Similarity=0.301  Sum_probs=30.9

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC  104 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~  104 (183)
                      .+|+|||||..|+-+|..|++.|. +|+|+++++.
T Consensus         3 ~dV~IVGaG~aGl~~A~~L~~~G~-~v~viE~~~~   36 (390)
T TIGR02360         3 TQVAIIGAGPSGLLLGQLLHKAGI-DNVILERQSR   36 (390)
T ss_pred             ceEEEECccHHHHHHHHHHHHCCC-CEEEEECCCC
Confidence            459999999999999999999998 6999999764

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=97.63  E-value=0.00019  Score=61.89  Aligned_cols=32  Identities=22%  Similarity=0.436  Sum_probs=29.3

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      +|+|||||.-|+.+|..+++.|. +|+++++..
T Consensus         2 ~vvVIG~G~aG~~aA~~~~~~g~-~V~lie~~~   33 (458)
T PRK06912          2 KLVVIGGGPAGYVAAITAAQNGK-NVTLIDEAD   33 (458)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCC-cEEEEECCc
Confidence            69999999999999999999996 699999853

>PRK13748 putative mercuric reductase; Provisional

Probab=97.62  E-value=0.00089  Score=59.04  Aligned_cols=31  Identities=35%  Similarity=0.533  Sum_probs=28.9

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      .|+|||||..|+.+|..|+++|. +|.||++.
T Consensus       100 DvvVIG~GpaG~~aA~~~~~~G~-~v~lie~~  130 (561)
T PRK13748        100 HVAVIGSGGAAMAAALKAVEQGA-RVTLIERG  130 (561)
T ss_pred             CEEEECcCHHHHHHHHHHHhCCC-eEEEEecC
Confidence            59999999999999999999996 79999975

>PRK06175 L-aspartate oxidase; Provisional

Probab=97.62  E-value=0.00092  Score=57.33  Aligned_cols=30  Identities=23%  Similarity=0.354  Sum_probs=26.1

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      .|+|||+|..|+-+|..+. .|+ +|.|+++.
T Consensus         6 DVvVVG~G~AGl~AA~~a~-~G~-~V~lleK~   35 (433)
T PRK06175          6 DVLIVGSGVAGLYSALNLR-KDL-KILMVSKG   35 (433)
T ss_pred             cEEEECchHHHHHHHHHhc-cCC-CEEEEecC
Confidence            3999999999999999874 687 69999874

>PRK13984 putative oxidoreductase; Provisional

Probab=97.61  E-value=0.00017  Score=64.28  Aligned_cols=85  Identities=14%  Similarity=0.127  Sum_probs=57.1

Q ss_pred             CcceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCC--c----CCCC-------HHHHHHHHHcCcEEEeCCcceEEE
Q psy16200         68 LKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCT--N----IRAV-------PEEVQLAWEEKCEFLPFMSPVQVD  134 (183)
Q Consensus        68 ~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~--~----~~~~-------~~~~~~~~~~gv~~~~~~~~~~i~  134 (183)
                      .+++|+|||+|..|+.+|..|.++|. +|+++++....  .    ++..       ...+..+.+.|++++.++.+..  
T Consensus       282 ~~~~v~IIGaG~aGl~aA~~L~~~G~-~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~--  358 (604)
T PRK13984        282 KNKKVAIVGSGPAGLSAAYFLATMGY-EVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHLNTRVGK--  358 (604)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCC-eEEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHHCCcEEECCCEeCC--
Confidence            34569999999999999999999997 69999876431  0    1111       1223456778899888765421  


Q ss_pred             ccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEccccc
Q psy16200        135 VKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGST  178 (183)
Q Consensus       135 ~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~  178 (183)
                         +    +.+              .  .....+|.||+|+|..
T Consensus       359 ---~----~~~--------------~--~~~~~yD~vilAtGa~  379 (604)
T PRK13984        359 ---D----IPL--------------E--ELREKHDAVFLSTGFT  379 (604)
T ss_pred             ---c----CCH--------------H--HHHhcCCEEEEEcCcC
Confidence               0    001              0  1124689999999975

>PRK06996 hypothetical protein; Provisional

Probab=97.61  E-value=0.00068  Score=57.25  Aligned_cols=34  Identities=18%  Similarity=0.190  Sum_probs=29.2

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCC---ceEEEEEeec
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGA---NKVLVVFRKG  103 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~---~~V~lv~r~~  103 (183)
                      .+|+|||||..|+-+|..|++.|.   .+|+++++.+
T Consensus        12 ~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~   48 (398)
T PRK06996         12 FDIAIVGAGPVGLALAGWLARRSATRALSIALIDARE   48 (398)
T ss_pred             CCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCC
Confidence            359999999999999999999872   2699999864

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=97.61  E-value=0.00055  Score=58.93  Aligned_cols=31  Identities=35%  Similarity=0.483  Sum_probs=28.6

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      .|+|||||..|+.+|..++++|. +|+|+++.
T Consensus         4 DvvVIG~GpaG~~aA~~aa~~G~-~V~liE~~   34 (450)
T TIGR01421         4 DYLVIGGGSGGIASARRAAEHGA-KALLVEAK   34 (450)
T ss_pred             CEEEECcCHHHHHHHHHHHHCCC-cEEEeccc
Confidence            39999999999999999999997 69999974

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=97.60  E-value=0.00084  Score=56.39  Aligned_cols=32  Identities=22%  Similarity=0.230  Sum_probs=29.5

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      +|+|||||..|+-+|..|++.|. +|+++++++
T Consensus         5 dv~IvGgG~aGl~~A~~L~~~G~-~v~l~E~~~   36 (384)
T PRK08849          5 DIAVVGGGMVGAATALGFAKQGR-SVAVIEGGE   36 (384)
T ss_pred             cEEEECcCHHHHHHHHHHHhCCC-cEEEEcCCC
Confidence            49999999999999999999998 699999764

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=97.60  E-value=0.0008  Score=56.37  Aligned_cols=31  Identities=26%  Similarity=0.303  Sum_probs=28.8

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      +|+|||||..|+-+|..|++.|. +|+|+++.
T Consensus         3 dV~IvGgG~~Gl~~A~~L~~~G~-~v~l~E~~   33 (374)
T PRK06617          3 NTVILGCGLSGMLTALSFAQKGI-KTTIFESK   33 (374)
T ss_pred             cEEEECCCHHHHHHHHHHHcCCC-eEEEecCC
Confidence            49999999999999999999997 69999975

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=97.60  E-value=0.0013  Score=58.79  Aligned_cols=31  Identities=26%  Similarity=0.189  Sum_probs=28.1

Q ss_pred             EEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         72 VIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        72 VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      |+|||+|..|+-+|..+++.|+ +|.|+++.+
T Consensus         1 VlVVG~G~AGl~AAl~Aae~G~-~VilleK~~   31 (603)
T TIGR01811         1 VIVVGTGLAGGMAAAKLAELGY-HVKLFSYVD   31 (603)
T ss_pred             CEEECccHHHHHHHHHHHHcCC-CEEEEEecC
Confidence            6899999999999999999998 699999754

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.60  E-value=0.0011  Score=58.87  Aligned_cols=31  Identities=26%  Similarity=0.347  Sum_probs=27.3

Q ss_pred             eEEEEcCChhHHHHHHHHHHcC--CceEEEEEee
Q psy16200         71 TVIVLGAGDTAFDCATSALRCG--ANKVLVVFRK  102 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G--~~~V~lv~r~  102 (183)
                      .|+|||||..|+-+|..+++.|  + +|+|+++.
T Consensus         5 DVlVIG~G~AGl~AAi~aa~~g~g~-~V~vleK~   37 (575)
T PRK05945          5 DVVIVGGGLAGCRAALEIKRLDPSL-DVAVVAKT   37 (575)
T ss_pred             cEEEECccHHHHHHHHHHHHhcCCC-cEEEEecc
Confidence            3999999999999999999875  5 69999974

>PRK08013 oxidoreductase; Provisional

Probab=97.60  E-value=0.00091  Score=56.52  Aligned_cols=33  Identities=21%  Similarity=0.297  Sum_probs=30.3

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC  104 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~  104 (183)
                      +|+|||||..|+-+|..|++.|. +|+++++++.
T Consensus         5 dV~IvGaGpaGl~~A~~La~~G~-~v~viE~~~~   37 (400)
T PRK08013          5 DVVIAGGGMVGLAVACGLQGSGL-RVAVLEQRVP   37 (400)
T ss_pred             CEEEECcCHHHHHHHHHHhhCCC-EEEEEeCCCC
Confidence            49999999999999999999997 6999998764

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.58  E-value=0.0012  Score=59.27  Aligned_cols=31  Identities=35%  Similarity=0.551  Sum_probs=28.5

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      .|+|||+|..|+-+|..+++.|+ +|.|+++.
T Consensus        10 DVvVIG~G~AGl~AAl~Aae~G~-~V~lieK~   40 (626)
T PRK07803         10 DVVVIGAGGAGLRAAIEARERGL-RVAVVCKS   40 (626)
T ss_pred             cEEEECcCHHHHHHHHHHHHCCC-CEEEEecc
Confidence            49999999999999999999998 69999874

>PRK14727 putative mercuric reductase; Provisional

Probab=97.57  E-value=0.0015  Score=56.73  Aligned_cols=32  Identities=31%  Similarity=0.477  Sum_probs=29.4

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      -+|+|||+|..|..+|..|+++|. +|+++++.
T Consensus        17 ~dvvvIG~G~aG~~~a~~~~~~g~-~v~~ie~~   48 (479)
T PRK14727         17 LHVAIIGSGSAAFAAAIKAAEHGA-RVTIIEGA   48 (479)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCC-eEEEEEcc
Confidence            459999999999999999999996 79999975

>PLN02661 Putative thiazole synthesis

Probab=97.56  E-value=0.0016  Score=54.35  Aligned_cols=104  Identities=16%  Similarity=0.268  Sum_probs=65.8

Q ss_pred             eEEEEcCChhHHHHHHHHHHc-CCceEEEEEeecCCc---------CCCC------HH----------------------
Q psy16200         71 TVIVLGAGDTAFDCATSALRC-GANKVLVVFRKGCTN---------IRAV------PE----------------------  112 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~-G~~~V~lv~r~~~~~---------~~~~------~~----------------------  112 (183)
                      +|+|||||..|+-+|..|++. |. +|+++++.....         +...      ..                      
T Consensus        94 DVlIVGaG~AGl~AA~~La~~~g~-kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV~fd~~dgy~vv~ha~  172 (357)
T PLN02661         94 DVVIVGAGSAGLSCAYELSKNPNV-KVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVPYDEQENYVVIKHAA  172 (357)
T ss_pred             CEEEECCHHHHHHHHHHHHHcCCC-eEEEEecCcccccceeeCcccccccccccHHHHHHHHcCCCcccCCCeeEecchH
Confidence            599999999999999999976 65 799999854210         0000      00                      


Q ss_pred             -----HHHHH-HHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCC---ceEEEECCEEEEcccccc
Q psy16200        113 -----EVQLA-WEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEE---QRIKLKANYIISAFGSTL  179 (183)
Q Consensus       113 -----~~~~~-~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g---~~~~i~~D~Vi~a~G~~p  179 (183)
                           .+.++ .+.|++++.++.+.++..+++++.++.+.-.....+    ...+   ....+.++.||+|+|-.+
T Consensus       173 e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~grVaGVVvnw~~v~~~----~~~~s~~dp~~I~AkaVVlATGh~g  244 (357)
T PLN02661        173 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGDRVGGVVTNWALVAQN----HDTQSCMDPNVMEAKVVVSSCGHDG  244 (357)
T ss_pred             HHHHHHHHHHHhcCCCEEEeCeEeeeEEecCCEEEEEEeecchhhhc----cCCCCccceeEEECCEEEEcCCCCC
Confidence                 01112 235788888888888776667787776421000000    0111   234789999999999654

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=97.56  E-value=0.0017  Score=58.24  Aligned_cols=31  Identities=35%  Similarity=0.434  Sum_probs=29.0

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      .|+|||||.+|+-+|..|+++|. +|+||++.
T Consensus        73 DVvVIGGGi~Ga~~A~~lA~rGl-~V~LvE~~  103 (627)
T PLN02464         73 DVLVVGGGATGAGVALDAATRGL-RVGLVERE  103 (627)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCC-EEEEEecc
Confidence            49999999999999999999998 69999984

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=97.56  E-value=0.0013  Score=55.19  Aligned_cols=31  Identities=23%  Similarity=0.339  Sum_probs=28.6

Q ss_pred             EEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         72 VIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        72 VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      |+|||||..|+-+|..|++.|. +|+|+++++
T Consensus         2 viIiGaG~AGl~~A~~la~~g~-~v~liE~~~   32 (388)
T TIGR01790         2 LAVIGGGPAGLAIALELARPGL-RVQLIEPHP   32 (388)
T ss_pred             EEEECCCHHHHHHHHHHHhCCC-eEEEEccCC
Confidence            8999999999999999999997 699999864

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>TIGR02053 MerA mercuric reductase

Probab=97.55  E-value=0.00042  Score=59.71  Aligned_cols=30  Identities=37%  Similarity=0.589  Sum_probs=28.2

Q ss_pred             EEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         72 VIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        72 VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      |+|||||..|+.+|..++++|. +|+|+++.
T Consensus         3 vvVIGaGpaG~~aA~~aa~~g~-~v~lie~~   32 (463)
T TIGR02053         3 LVIIGSGAAAFAAAIKAAELGA-SVAMVERG   32 (463)
T ss_pred             EEEECCCHHHHHHHHHHHHCCC-eEEEEeCC
Confidence            8999999999999999999996 79999974

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.55  E-value=0.0014  Score=58.17  Aligned_cols=31  Identities=26%  Similarity=0.390  Sum_probs=27.9

Q ss_pred             eEEEEcCChhHHHHHHHHHHcC---CceEEEEEee
Q psy16200         71 TVIVLGAGDTAFDCATSALRCG---ANKVLVVFRK  102 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G---~~~V~lv~r~  102 (183)
                      .|+|||+|..|+-+|..+++.|   + +|+|+++.
T Consensus         7 DVlVVG~G~AGl~AA~~Aa~~G~~~~-~V~lleK~   40 (577)
T PRK06069          7 DVVIVGSGLAGLRAAVAAAERSGGKL-SVAVVSKT   40 (577)
T ss_pred             CEEEECccHHHHHHHHHHHHhCCCCC-cEEEEEcc
Confidence            3999999999999999999998   6 69999973

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=97.54  E-value=0.0011  Score=56.10  Aligned_cols=31  Identities=16%  Similarity=0.300  Sum_probs=29.1

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      +|+|||||..|+-+|..|++.|. +|++++++
T Consensus         6 dV~IvGaG~~Gl~~A~~L~~~G~-~v~viE~~   36 (405)
T PRK08850          6 DVAIIGGGMVGLALAAALKESDL-RIAVIEGQ   36 (405)
T ss_pred             CEEEECccHHHHHHHHHHHhCCC-EEEEEcCC
Confidence            59999999999999999999997 69999985

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=97.54  E-value=0.0015  Score=56.44  Aligned_cols=32  Identities=25%  Similarity=0.348  Sum_probs=29.7

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      +|+|||||..|+-+|..|++.|. +|.+++++.
T Consensus        41 DViIVGaGPAG~~aA~~LA~~G~-~VlllEr~~   72 (450)
T PLN00093         41 RVAVIGGGPAGACAAETLAKGGI-ETFLIERKL   72 (450)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCC-cEEEEecCC
Confidence            59999999999999999999998 699999864

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=97.54  E-value=0.0017  Score=58.12  Aligned_cols=31  Identities=23%  Similarity=0.385  Sum_probs=28.4

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      .|+|||+|..|+-+|..+++.|+ +|.|+++.
T Consensus        31 DVlVIG~G~AGl~AAi~Aa~~G~-~V~lveK~   61 (617)
T PTZ00139         31 DAVVVGAGGAGLRAALGLVELGY-KTACISKL   61 (617)
T ss_pred             CEEEECccHHHHHHHHHHHHcCC-cEEEEecc
Confidence            49999999999999999999998 69999873

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.52  E-value=0.0018  Score=57.85  Aligned_cols=31  Identities=23%  Similarity=0.417  Sum_probs=28.1

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      .|+|||+|..|+-+|..+++.|+ +|.|+++.
T Consensus        14 DVvVIG~G~AGl~AAl~Aa~~G~-~V~lveK~   44 (598)
T PRK09078         14 DVVVVGAGGAGLRATLGMAEAGL-KTACITKV   44 (598)
T ss_pred             CEEEECccHHHHHHHHHHHHcCC-cEEEEEcc
Confidence            49999999999999999999997 69999764

>TIGR00551 nadB L-aspartate oxidase

Probab=97.51  E-value=0.0019  Score=56.20  Aligned_cols=30  Identities=27%  Similarity=0.509  Sum_probs=27.2

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      .|+|||+|..|+-+|..+++.| . |+|+++.
T Consensus         4 DVlVVG~G~AGl~AA~~aa~~G-~-V~lleK~   33 (488)
T TIGR00551         4 DVVVIGSGAAGLSAALALADQG-R-VIVLSKA   33 (488)
T ss_pred             cEEEECccHHHHHHHHHHHhCC-C-EEEEEcc
Confidence            3999999999999999999998 4 9999875

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>PRK07538 hypothetical protein; Provisional

Probab=97.50  E-value=0.0015  Score=55.39  Aligned_cols=32  Identities=22%  Similarity=0.272  Sum_probs=29.6

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      +|+|||||..|+-+|..|++.|. +|+++++++
T Consensus         2 dV~IVGaG~aGl~~A~~L~~~G~-~v~v~E~~~   33 (413)
T PRK07538          2 KVLIAGGGIGGLTLALTLHQRGI-EVVVFEAAP   33 (413)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCC-cEEEEEcCC
Confidence            49999999999999999999998 699999865

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.50  E-value=0.0018  Score=57.13  Aligned_cols=30  Identities=27%  Similarity=0.508  Sum_probs=27.3

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      .|+|||+|..|+-+|..+ +.|+ +|.|+++.
T Consensus         9 DVlVVG~G~AGl~AAi~A-~~G~-~VilleK~   38 (543)
T PRK06263          9 DVLIIGSGGAGARAAIEA-ERGK-NVVIVSKG   38 (543)
T ss_pred             CEEEECccHHHHHHHHHH-hcCC-CEEEEEcc
Confidence            499999999999999999 8897 69999984

>PRK08275 putative oxidoreductase; Provisional

Probab=97.50  E-value=0.0026  Score=56.20  Aligned_cols=32  Identities=22%  Similarity=0.343  Sum_probs=28.0

Q ss_pred             eEEEEcCChhHHHHHHHHHHc--CCceEEEEEeec
Q psy16200         71 TVIVLGAGDTAFDCATSALRC--GANKVLVVFRKG  103 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~--G~~~V~lv~r~~  103 (183)
                      .|+|||+|..|+-+|..+++.  |+ +|.|+++.+
T Consensus        11 DVlVIG~G~AGl~AAi~aa~~g~g~-~VilveK~~   44 (554)
T PRK08275         11 DILVIGGGTAGPMAAIKAKERNPAL-RVLLLEKAN   44 (554)
T ss_pred             CEEEECcCHHHHHHHHHHHHhCCCC-eEEEEeCCC
Confidence            499999999999999999987  56 799999754

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.49  E-value=0.0025  Score=55.69  Aligned_cols=32  Identities=28%  Similarity=0.361  Sum_probs=29.4

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      .|+|||||.+|+-+|..|+++|. +|.|+++.+
T Consensus         8 DVvIIGGGi~G~~~A~~la~rG~-~V~LlEk~d   39 (502)
T PRK13369          8 DLFVIGGGINGAGIARDAAGRGL-KVLLCEKDD   39 (502)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCC-cEEEEECCC
Confidence            49999999999999999999997 699999863

>TIGR00275 flavoprotein, HI0933 family

Probab=97.48  E-value=0.00094  Score=56.66  Aligned_cols=30  Identities=30%  Similarity=0.502  Sum_probs=27.2

Q ss_pred             EEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         73 IVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        73 vViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      +|||||..|+-+|..+++.|. +|+|+++.+
T Consensus         1 vIIGgG~aGl~aAi~aa~~G~-~V~llEk~~   30 (400)
T TIGR00275         1 IIIGGGAAGLMAAITAAREGL-SVLLLEKNK   30 (400)
T ss_pred             CEEEEeHHHHHHHHHHHhcCC-cEEEEecCc
Confidence            589999999999999999997 699999854

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=97.47  E-value=0.00036  Score=64.85  Aligned_cols=35  Identities=23%  Similarity=0.278  Sum_probs=31.3

Q ss_pred             CCcceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         67 ILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        67 ~~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      ..++||+|||+|..|+.+|.+|++.|. +|+++++.
T Consensus       381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh-~Vtv~E~~  415 (1028)
T PRK06567        381 PTNYNILVTGLGPAGFSLSYYLLRSGH-NVTAIDGL  415 (1028)
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhCCC-eEEEEccc
Confidence            355679999999999999999999997 69999975

>KOG1399|consensus

Probab=97.46  E-value=0.0016  Score=56.01  Aligned_cols=35  Identities=34%  Similarity=0.500  Sum_probs=31.3

Q ss_pred             CcceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         68 LKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        68 ~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      ..++|+|||+|.+|+-.|+.|.+.|. +|++++|.+
T Consensus         5 ~~~~vaIIGAG~sGL~~ar~l~~~g~-~v~vfEr~~   39 (448)
T KOG1399|consen    5 MSKDVAVIGAGPAGLAAARELLREGH-EVVVFERTD   39 (448)
T ss_pred             CCCceEEECcchHHHHHHHHHHHCCC-CceEEEecC
Confidence            34679999999999999999999997 699999854

>PLN02507 glutathione reductase

Probab=97.45  E-value=0.00062  Score=59.44  Aligned_cols=30  Identities=30%  Similarity=0.355  Sum_probs=28.2

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEe
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFR  101 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r  101 (183)
                      .|+|||||..|+-+|..++++|. +|.||++
T Consensus        27 DvvVIG~GpaG~~aA~~a~~~G~-~V~liE~   56 (499)
T PLN02507         27 DLFVIGAGSGGVRAARFSANFGA-KVGICEL   56 (499)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC-eEEEEec
Confidence            49999999999999999999996 7999995

>PLN02697 lycopene epsilon cyclase

Probab=97.45  E-value=0.0021  Score=56.59  Aligned_cols=31  Identities=19%  Similarity=0.369  Sum_probs=28.4

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      .|+|||||..|+-+|..|++.|. +|.++++.
T Consensus       110 DVvIVGaGPAGLalA~~Lak~Gl-~V~LIe~~  140 (529)
T PLN02697        110 DLVVIGCGPAGLALAAESAKLGL-NVGLIGPD  140 (529)
T ss_pred             cEEEECcCHHHHHHHHHHHhCCC-cEEEecCc
Confidence            49999999999999999999997 69999864

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.44  E-value=0.0029  Score=56.38  Aligned_cols=31  Identities=19%  Similarity=0.379  Sum_probs=28.4

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      .|+|||+|..|+-+|..+++.|+ +|.|+++.
T Consensus         9 DVlVVG~G~AGl~AAi~Aa~~G~-~V~lleK~   39 (588)
T PRK08958          9 DAVVIGAGGAGMRAALQISQSGQ-SCALLSKV   39 (588)
T ss_pred             CEEEECccHHHHHHHHHHHHcCC-cEEEEEcc
Confidence            49999999999999999999998 69999974

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=97.42  E-value=0.0031  Score=54.34  Aligned_cols=152  Identities=13%  Similarity=0.063  Sum_probs=83.9

Q ss_pred             CCCCEEEEccCCCCCcccCCC-C-CCccCCCceehhhhHHHHhccccCCccCCCCC----CCCCCCcceEEEE---cCCh
Q psy16200          9 DGYTAIFIGIGKPNANVIPIF-Q-GLTEEMGFYTSKTFLPRVATSSKKGLCGGCKK----ESLPILKGTVIVL---GAGD   79 (183)
Q Consensus         9 ~~~davviATGa~~p~~l~i~-g-g~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~VvVi---GgG~   79 (183)
                      ...-++|+|||- .+....-. + |.--+++|++..++-+..+..   |   +..+    ++.-..+++|+.|   |.-+
T Consensus       299 ~~vGaIIvAtGy-~~~Da~~k~EyGYG~~~nVIT~lElErml~~~---G---PT~GkvlrpSdg~~pKrVaFIqCVGSRD  371 (622)
T COG1148         299 LEVGAIIVATGY-KPFDATRKEEYGYGKYPNVITNLELERMLNPN---G---PTGGKVLRPSDGKPPKRVAFIQCVGSRD  371 (622)
T ss_pred             EEeceEEEEccc-cccCcchhhhcCCCCCcchhhHHHHHHHhccC---C---CCCceEEecCCCCCCceEEEEEEecCcC
Confidence            346789999995 44433211 0 222357899999887765421   0   0010    0112356787776   6655


Q ss_pred             --------hHHHHHHHHH------Hc--CCceEEEEEeecCCcCCCCHHHHHHHH-HcCcEEEeCCcceEEEc-cCCcEE
Q psy16200         80 --------TAFDCATSAL------RC--GANKVLVVFRKGCTNIRAVPEEVQLAW-EEKCEFLPFMSPVQVDV-KDNKIA  141 (183)
Q Consensus        80 --------~g~e~A~~l~------~~--G~~~V~lv~r~~~~~~~~~~~~~~~~~-~~gv~~~~~~~~~~i~~-~~~~v~  141 (183)
                              +..=|...|.      ++  .+ +|++.+..-+..-....+.+.+.+ +.||.|+.+ ++.+|.. .++++.
T Consensus       372 ~~~~n~YCSrvCCm~slKqA~~Ike~~Pd~-~v~I~YmDiRafG~~yEefY~~~Q~~~gV~fIRG-rvaei~e~p~~~l~  449 (622)
T COG1148         372 FQVGNPYCSRVCCMVSLKQAQLIKERYPDT-DVTIYYMDIRAFGKDYEEFYVRSQEDYGVRFIRG-RVAEIAEFPKKKLI  449 (622)
T ss_pred             cccCChhhHHHHHHHHHhhhhhhhhcCCCc-ceeEEEEEeeccCccHHHHHHhhhhhhchhhhcC-ChHHheeCCCCeeE
Confidence                    1111222221      11  23 588888653321112233344444 779999877 4445543 344443


Q ss_pred             EEEEEEeeecCCCCeecCCCceEEEECCEEEEccccccc
Q psy16200        142 GMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLL  180 (183)
Q Consensus       142 ~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~  180 (183)
                       |+..++          ..|...++++|+|++++|..|.
T Consensus       450 -V~~EdT----------l~g~~~e~~~DLVVLa~Gmep~  477 (622)
T COG1148         450 -VRVEDT----------LTGEVKEIEADLVVLATGMEPS  477 (622)
T ss_pred             -EEEEec----------cCccceecccceEEEeeccccC
Confidence             555432          3567789999999999999984

>PRK09897 hypothetical protein; Provisional

Probab=97.42  E-value=0.0026  Score=56.02  Aligned_cols=34  Identities=18%  Similarity=0.215  Sum_probs=28.4

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCc-eEEEEEeec
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGAN-KVLVVFRKG  103 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~-~V~lv~r~~  103 (183)
                      ++|+|||||..|+-+|..|++.+.. +|+|++++.
T Consensus         2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~   36 (534)
T PRK09897          2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQAD   36 (534)
T ss_pred             CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCC
Confidence            3699999999999999999886531 699999854

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=97.42  E-value=0.0012  Score=56.75  Aligned_cols=30  Identities=33%  Similarity=0.505  Sum_probs=28.1

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEe
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFR  101 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r  101 (183)
                      +|+|||||..|+.+|..|+++|. +|+++++
T Consensus         3 DvvVIG~G~aGl~aA~~la~~G~-~v~lie~   32 (461)
T TIGR01350         3 DVVVIGGGPGGYVAAIRAAQLGL-KVALVEK   32 (461)
T ss_pred             cEEEECCCHHHHHHHHHHHhCCC-eEEEEec
Confidence            39999999999999999999997 7999997

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=97.41  E-value=0.0024  Score=53.54  Aligned_cols=32  Identities=28%  Similarity=0.453  Sum_probs=29.7

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      +|+|||||..|+-+|..|++.|. +|+++++.+
T Consensus         9 dViIVGaG~~Gl~~A~~L~~~G~-~v~liE~~~   40 (388)
T PRK07494          9 DIAVIGGGPAGLAAAIALARAGA-SVALVAPEP   40 (388)
T ss_pred             CEEEECcCHHHHHHHHHHhcCCC-eEEEEeCCC
Confidence            59999999999999999999997 699999875

>TIGR00136 gidA glucose-inhibited division protein A

Probab=97.41  E-value=0.0023  Score=57.03  Aligned_cols=30  Identities=40%  Similarity=0.607  Sum_probs=28.0

Q ss_pred             EEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         72 VIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        72 VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      |+|||||..|+++|..+++.|. +|.++++.
T Consensus         3 ViVIGaG~AGl~aA~ala~~G~-~v~Lie~~   32 (617)
T TIGR00136         3 VIVIGGGHAGCEAALAAARMGA-KTLLLTLN   32 (617)
T ss_pred             EEEECccHHHHHHHHHHHHCCC-CEEEEecc
Confidence            8999999999999999999997 69999975

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>PRK08401 L-aspartate oxidase; Provisional

Probab=97.41  E-value=0.0021  Score=55.65  Aligned_cols=31  Identities=23%  Similarity=0.266  Sum_probs=28.5

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      +|+|||+|..|+-+|..+++.|+ +|.|+++.
T Consensus         3 DVvVVGaG~AGl~AAi~aae~G~-~V~liek~   33 (466)
T PRK08401          3 KVGIVGGGLAGLTAAISLAKKGF-DVTIIGPG   33 (466)
T ss_pred             eEEEECccHHHHHHHHHHHHCCC-eEEEEeCC
Confidence            49999999999999999999997 69999974

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=97.39  E-value=0.0024  Score=53.45  Aligned_cols=31  Identities=26%  Similarity=0.286  Sum_probs=28.7

Q ss_pred             eEEEEcCChhHHHHHHHHHHc---CCceEEEEEee
Q psy16200         71 TVIVLGAGDTAFDCATSALRC---GANKVLVVFRK  102 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~---G~~~V~lv~r~  102 (183)
                      +|+|||||..|+-+|..|+++   |. +|+|++|.
T Consensus         5 dv~IvGaG~aGl~~A~~L~~~~~~G~-~v~v~E~~   38 (395)
T PRK05732          5 DVIIVGGGMAGATLALALSRLSHGGL-PVALIEAF   38 (395)
T ss_pred             CEEEECcCHHHHHHHHHhhhcccCCC-EEEEEeCC
Confidence            499999999999999999998   98 69999984

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=97.37  E-value=0.0035  Score=56.38  Aligned_cols=31  Identities=19%  Similarity=0.333  Sum_probs=28.3

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      .|+|||+|..|+-+|..+++.|+ +|.|++..
T Consensus        52 DVlVIG~G~AGl~AAl~Aae~G~-~VilveK~   82 (635)
T PLN00128         52 DAVVVGAGGAGLRAAIGLSEHGF-NTACITKL   82 (635)
T ss_pred             CEEEECccHHHHHHHHHHHhcCC-cEEEEEcC
Confidence            49999999999999999999998 69999874

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=97.37  E-value=0.0038  Score=53.79  Aligned_cols=34  Identities=18%  Similarity=0.407  Sum_probs=30.0

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      -+|+|||||..|+-+|..|.+.|...+.+++++.
T Consensus         9 ~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~   42 (443)
T COG2072           9 TDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRD   42 (443)
T ss_pred             ccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccC
Confidence            3599999999999999999999974499999864

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=97.37  E-value=0.0026  Score=55.34  Aligned_cols=30  Identities=33%  Similarity=0.503  Sum_probs=27.9

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEe
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFR  101 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r  101 (183)
                      .|+|||+|..|..+|..++++|. +|.+|++
T Consensus         4 DvvVIG~G~aG~~aA~~aa~~G~-~v~lie~   33 (484)
T TIGR01438         4 DLIVIGGGSGGLAAAKEAADYGA-KVMLLDF   33 (484)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC-eEEEEec
Confidence            39999999999999999999996 7999996

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.36  E-value=0.0044  Score=55.28  Aligned_cols=31  Identities=26%  Similarity=0.483  Sum_probs=28.4

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      .|+|||+|..|+-+|..+++.|+ +|+|++..
T Consensus        14 DVlVIG~G~AGl~AAi~Aa~~G~-~V~vleK~   44 (591)
T PRK07057         14 DVVIVGAGGSGMRASLQLARAGL-SVAVLSKV   44 (591)
T ss_pred             CEEEECccHHHHHHHHHHHHCCC-cEEEEecc
Confidence            49999999999999999999997 69999974

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=97.35  E-value=0.0026  Score=54.96  Aligned_cols=31  Identities=23%  Similarity=0.453  Sum_probs=25.4

Q ss_pred             eEEEEcCChhHHHHHHHHHHcC---CceEEEEEee
Q psy16200         71 TVIVLGAGDTAFDCATSALRCG---ANKVLVVFRK  102 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G---~~~V~lv~r~  102 (183)
                      +|+|||||..|.-+|..|++.+   . +|++|++.
T Consensus         1 ~v~IvGgG~aG~~~A~~L~~~~~~~~-~v~lie~~   34 (454)
T PF04820_consen    1 DVVIVGGGTAGWMAAAALARAGPDAL-SVTLIESP   34 (454)
T ss_dssp             EEEEE--SHHHHHHHHHHHHHCTCSS-EEEEEE-S
T ss_pred             CEEEECCCHHHHHHHHHHHHhCCCCc-EEEEEecC
Confidence            5999999999999999999998   5 69999974

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=97.35  E-value=0.0042  Score=55.27  Aligned_cols=31  Identities=23%  Similarity=0.385  Sum_probs=27.1

Q ss_pred             eEEEEcCChhHHHHHHHHHHc--CCceEEEEEee
Q psy16200         71 TVIVLGAGDTAFDCATSALRC--GANKVLVVFRK  102 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~--G~~~V~lv~r~  102 (183)
                      .|+|||+|..|+-+|..+++.  |. +|.|+++.
T Consensus         5 DVlVIG~G~AGl~AAl~aa~~g~g~-~V~lveK~   37 (580)
T TIGR01176         5 DIAVIGAGGAGLRAAIAAAEANPHL-DVALISKV   37 (580)
T ss_pred             eEEEECccHHHHHHHHHHHHhCCCC-cEEEEEcc
Confidence            399999999999999999887  45 69999974

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>PRK07804 L-aspartate oxidase; Provisional

Probab=97.34  E-value=0.0041  Score=54.88  Aligned_cols=32  Identities=38%  Similarity=0.603  Sum_probs=28.9

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      .|+|||+|..|+-+|..+++.|+ +|.|+++..
T Consensus        18 DVlVIG~G~AGl~AAi~aae~G~-~VilleK~~   49 (541)
T PRK07804         18 DVVVVGSGVAGLTAALAARRAGR-RVLVVTKAA   49 (541)
T ss_pred             CEEEECccHHHHHHHHHHHHcCC-eEEEEEccC
Confidence            49999999999999999999997 699999744

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.33  E-value=0.00074  Score=57.92  Aligned_cols=33  Identities=33%  Similarity=0.416  Sum_probs=29.7

Q ss_pred             cceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      +++|+|+|+|-+|+.+|..|++.|. +|+++.+.
T Consensus         5 ~k~v~iiG~g~~G~~~A~~l~~~G~-~V~~~d~~   37 (450)
T PRK14106          5 GKKVLVVGAGVSGLALAKFLKKLGA-KVILTDEK   37 (450)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            3669999999999999999999997 69999765

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=97.33  E-value=0.004  Score=55.42  Aligned_cols=31  Identities=19%  Similarity=0.413  Sum_probs=27.3

Q ss_pred             eEEEEcCChhHHHHHHHHHHcC--CceEEEEEee
Q psy16200         71 TVIVLGAGDTAFDCATSALRCG--ANKVLVVFRK  102 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G--~~~V~lv~r~  102 (183)
                      .|+|||+|..|+-+|..+++.|  + +|+|+++.
T Consensus         6 DVlVVG~G~AGl~AAi~Aa~~g~g~-~V~lleK~   38 (582)
T PRK09231          6 DLAIIGAGGAGLRAAIAAAEANPNL-KIALISKV   38 (582)
T ss_pred             eEEEECccHHHHHHHHHHHHhCCCC-cEEEEEcc
Confidence            3999999999999999999875  5 69999974

>PRK08071 L-aspartate oxidase; Provisional

Probab=97.33  E-value=0.0033  Score=55.05  Aligned_cols=31  Identities=26%  Similarity=0.455  Sum_probs=26.9

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      .|+|||+|..|+-+|..+++ |+ +|.|+++.+
T Consensus         5 DVlVVG~G~AGl~AAl~a~~-g~-~V~lveK~~   35 (510)
T PRK08071          5 DVIIIGSGIAALTVAKELCH-EY-NVIIITKKT   35 (510)
T ss_pred             CEEEECccHHHHHHHHHhhc-CC-CEEEEeccC
Confidence            49999999999999999976 87 699998743

>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=97.29  E-value=0.0044  Score=55.02  Aligned_cols=30  Identities=33%  Similarity=0.543  Sum_probs=27.1

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      .|+|||+| .|+.+|..+++.|+ +|.|+++.
T Consensus        18 DvvvvG~G-~G~~aA~~a~~~G~-~v~v~Ek~   47 (564)
T PRK12845         18 DLLVVGSG-TGMAAALAAHELGL-SVLIVEKS   47 (564)
T ss_pred             CEEEECCc-HHHHHHHHHHHCCC-cEEEEecC
Confidence            49999999 79999999999998 69999974

>PRK07395 L-aspartate oxidase; Provisional

Probab=97.29  E-value=0.0029  Score=56.00  Aligned_cols=31  Identities=19%  Similarity=0.298  Sum_probs=26.7

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      .|+|||+|..|+-+|..+++ |+ +|.|+++.+
T Consensus        11 DVlVVG~G~AGl~AAi~A~~-G~-~V~lieK~~   41 (553)
T PRK07395         11 DVLVVGSGAAGLYAALCLPS-HL-RVGLITKDT   41 (553)
T ss_pred             CEEEECccHHHHHHHHHhhc-CC-CEEEEEccC
Confidence            49999999999999999864 87 699999743

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=97.28  E-value=0.00044  Score=61.35  Aligned_cols=99  Identities=9%  Similarity=-0.003  Sum_probs=68.9

Q ss_pred             CcceEEEEcCCh--hHHHHHHHHHHcCCceEEEEEeecCCcCCC--------------CHH-----HHHHHHHcCcEEEe
Q psy16200         68 LKGTVIVLGAGD--TAFDCATSALRCGANKVLVVFRKGCTNIRA--------------VPE-----EVQLAWEEKCEFLP  126 (183)
Q Consensus        68 ~~~~VvViGgG~--~g~e~A~~l~~~G~~~V~lv~r~~~~~~~~--------------~~~-----~~~~~~~~gv~~~~  126 (183)
                      .++++.|+|+++  ++.+.+.++...+. .++++.+.... .+.              ...     ....+.+.|+++++
T Consensus       156 ~~~~~~~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l-~~~~~~~~~~~~g~~~~~G~~l~~~L~~~~~~~Gv~i~~  233 (574)
T PRK12842        156 PLKTITFIGMMFNSSNADLKHFFNATRS-LTSFIYVAKRL-ATHLKDLALYRRGTQVTSGNALAARLAKSALDLGIPILT  233 (574)
T ss_pred             CcccccccceecccchHHHHHHHhhccc-hhHHHHHHHHH-HhhHHHHhhccCCcccccHHHHHHHHHHHHHhCCCEEEe
Confidence            446788999999  89999999988886 47766543211 100              111     12345678999999


Q ss_pred             CCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCceEEEECC-EEEEccccccc
Q psy16200        127 FMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKAN-YIISAFGSTLL  180 (183)
Q Consensus       127 ~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D-~Vi~a~G~~p~  180 (183)
                      ++.+.++..++++++++.+..            .+....+.++ .||+|+|..++
T Consensus       234 ~~~v~~l~~~~g~V~GV~~~~------------~~~~~~i~a~k~VVlAtGg~~~  276 (574)
T PRK12842        234 GTPARELLTEGGRVVGARVID------------AGGERRITARRGVVLACGGFSH  276 (574)
T ss_pred             CCEEEEEEeeCCEEEEEEEEc------------CCceEEEEeCCEEEEcCCCccc
Confidence            999999876677888877631            2234567786 89999998764

>KOG1298|consensus

Probab=97.26  E-value=0.0021  Score=53.93  Aligned_cols=31  Identities=32%  Similarity=0.412  Sum_probs=28.7

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      .|+|||+|-.|.-+|..|++.|. +|++++|.
T Consensus        47 DvIIVGAGV~GsaLa~~L~kdGR-rVhVIERD   77 (509)
T KOG1298|consen   47 DVIIVGAGVAGSALAYALAKDGR-RVHVIERD   77 (509)
T ss_pred             cEEEECCcchHHHHHHHHhhCCc-EEEEEecc
Confidence            39999999999999999999995 79999985

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=97.23  E-value=0.00097  Score=58.14  Aligned_cols=30  Identities=40%  Similarity=0.608  Sum_probs=27.4

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEe
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFR  101 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r  101 (183)
                      .|+|||||-.|+|+|..++++|+ ++.|++.
T Consensus         6 DVIVIGgGHAG~EAA~AaARmG~-ktlLlT~   35 (621)
T COG0445           6 DVIVIGGGHAGVEAALAAARMGA-KTLLLTL   35 (621)
T ss_pred             ceEEECCCccchHHHHhhhccCC-eEEEEEc
Confidence            39999999999999999999998 5888875

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=97.22  E-value=0.00062  Score=43.19  Aligned_cols=30  Identities=23%  Similarity=0.351  Sum_probs=26.6

Q ss_pred             EEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200         74 VLGAGDTAFDCATSALRCGANKVLVVFRKGC  104 (183)
Q Consensus        74 ViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~  104 (183)
                      |||||..|+-+|..|++.|. +|+|+++++.
T Consensus         1 IiGaG~sGl~aA~~L~~~g~-~v~v~E~~~~   30 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGY-RVTVFEKNDR   30 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTS-EEEEEESSSS
T ss_pred             CEeeCHHHHHHHHHHHHCCC-cEEEEecCcc
Confidence            89999999999999999987 7999998764

...

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=97.19  E-value=0.00049  Score=58.76  Aligned_cols=34  Identities=24%  Similarity=0.188  Sum_probs=30.7

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC  104 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~  104 (183)
                      ++|+|||||.+|+++|..|++.|. +|+|+++++.
T Consensus         3 ~dVvVIGGGlAGleAAlaLAr~Gl-~V~LiE~rp~   36 (436)
T PRK05335          3 KPVNVIGAGLAGSEAAWQLAKRGV-PVELYEMRPV   36 (436)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCC-cEEEEEccCc
Confidence            459999999999999999999997 6999998654

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.18  E-value=0.0075  Score=53.81  Aligned_cols=30  Identities=27%  Similarity=0.321  Sum_probs=27.8

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEe
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFR  101 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r  101 (183)
                      .|+|||+|..|+-+|..+++.|+ +|.|+++
T Consensus         5 DVlVVG~G~AGl~AAi~Aa~~G~-~V~lieK   34 (589)
T PRK08641          5 KVIVVGGGLAGLMATIKAAEAGV-HVDLFSL   34 (589)
T ss_pred             cEEEECchHHHHHHHHHHHHcCC-cEEEEEc
Confidence            49999999999999999999998 6999995

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=97.15  E-value=0.0068  Score=54.01  Aligned_cols=32  Identities=31%  Similarity=0.464  Sum_probs=28.9

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      .|+|||+|..|+-+|..+++.|+ +|.|+++.+
T Consensus        13 DVvVVG~G~AGl~AA~~aae~G~-~VivlEk~~   44 (584)
T PRK12835         13 DVLVVGSGGGGMTAALTAAARGL-DTLVVEKSA   44 (584)
T ss_pred             CEEEECccHHHHHHHHHHHHCCC-cEEEEEcCC
Confidence            49999999999999999999997 699999743

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=97.14  E-value=0.0068  Score=52.53  Aligned_cols=30  Identities=33%  Similarity=0.466  Sum_probs=28.1

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEe
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFR  101 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r  101 (183)
                      .|+|||||..|+.+|..+++.|. +|.++++
T Consensus         6 DviIIG~G~aG~~aA~~~~~~g~-~v~lie~   35 (475)
T PRK06327          6 DVVVIGAGPGGYVAAIRAAQLGL-KVACIEA   35 (475)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCC-eEEEEec
Confidence            49999999999999999999996 7999997

>PTZ00052 thioredoxin reductase; Provisional

Probab=97.13  E-value=0.00092  Score=58.35  Aligned_cols=30  Identities=27%  Similarity=0.398  Sum_probs=28.1

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEe
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFR  101 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r  101 (183)
                      .|+|||||..|+.+|..++++|. +|.||++
T Consensus         7 DviVIG~GpaG~~AA~~aa~~G~-~V~lie~   36 (499)
T PTZ00052          7 DLVVIGGGSGGMAAAKEAAAHGK-KVALFDY   36 (499)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCC-eEEEEec
Confidence            49999999999999999999996 7999995

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.13  E-value=0.0098  Score=52.99  Aligned_cols=30  Identities=27%  Similarity=0.383  Sum_probs=26.3

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      .|+|||+|..|+-+|..+++. + +|.|+++.
T Consensus         7 DVlVIG~G~AGl~AAl~aa~~-~-~VilleK~   36 (583)
T PRK08205          7 DVVIVGAGGAGMRAAIEAGPR-A-RTAVLTKL   36 (583)
T ss_pred             cEEEECccHHHHHHHHHHHhC-C-CEEEEeCC
Confidence            399999999999999999875 6 69999973

>PRK07512 L-aspartate oxidase; Provisional

Probab=97.11  E-value=0.0064  Score=53.30  Aligned_cols=31  Identities=19%  Similarity=0.255  Sum_probs=26.2

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      -.|+|||+|..|+-+|..++  +. +|.|+++.+
T Consensus        10 ~DVlVIG~G~AGl~AAl~Aa--~~-~V~lleK~~   40 (513)
T PRK07512         10 GRPVIVGGGLAGLMAALKLA--PR-PVVVLSPAP   40 (513)
T ss_pred             CCEEEECchHHHHHHHHHhC--cC-CEEEEECCC
Confidence            45999999999999999886  55 699998754

>PLN02815 L-aspartate oxidase

Probab=97.08  E-value=0.0088  Score=53.44  Aligned_cols=31  Identities=19%  Similarity=0.407  Sum_probs=27.4

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      .|+|||+|..|+-+|..+++.| + |.|+++..
T Consensus        31 DVlVVG~G~AGl~AAl~Aae~G-~-VvlleK~~   61 (594)
T PLN02815         31 DFLVIGSGIAGLRYALEVAEYG-T-VAIITKDE   61 (594)
T ss_pred             CEEEECccHHHHHHHHHHhhCC-C-EEEEECCC
Confidence            4999999999999999999998 4 99998743

>PLN02546 glutathione reductase

Probab=97.07  E-value=0.0037  Score=55.38  Aligned_cols=30  Identities=23%  Similarity=0.275  Sum_probs=28.1

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEe
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFR  101 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r  101 (183)
                      .|+|||+|.-|+.+|..++++|. +|.|+++
T Consensus        81 DvvVIG~GpaG~~aA~~aa~~G~-~V~liE~  110 (558)
T PLN02546         81 DLFTIGAGSGGVRASRFASNFGA-SAAVCEL  110 (558)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC-eEEEEec
Confidence            49999999999999999999997 7999995

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=97.07  E-value=0.0094  Score=53.65  Aligned_cols=33  Identities=21%  Similarity=0.287  Sum_probs=29.7

Q ss_pred             eEEEEcCChhHHHHHHHHHHc-CCceEEEEEeecC
Q psy16200         71 TVIVLGAGDTAFDCATSALRC-GANKVLVVFRKGC  104 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~-G~~~V~lv~r~~~  104 (183)
                      +|+|||||.+|+-+|..|+++ |. +|.|+++++.
T Consensus        34 dVlIVGAGPaGL~lA~~Lar~~Gi-~v~IiE~~~~   67 (634)
T PRK08294         34 DVLIVGCGPAGLTLAAQLSAFPDI-TTRIVERKPG   67 (634)
T ss_pred             CEEEECCCHHHHHHHHHHhcCCCC-cEEEEEcCCC
Confidence            499999999999999999995 98 6999998753

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=97.06  E-value=0.0053  Score=53.04  Aligned_cols=31  Identities=32%  Similarity=0.482  Sum_probs=29.2

Q ss_pred             EEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         72 VIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        72 VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      ++|||+|.-|.-+|..++++|.+ |.+++++.
T Consensus         7 vvVIG~GpaG~~aA~raa~~G~k-valvE~~~   37 (454)
T COG1249           7 VVVIGAGPAGYVAAIRAAQLGLK-VALVEKGE   37 (454)
T ss_pred             EEEECCCHHHHHHHHHHHhCCCC-EEEEeecC
Confidence            99999999999999999999986 99999973

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=97.05  E-value=0.02  Score=51.07  Aligned_cols=32  Identities=34%  Similarity=0.538  Sum_probs=28.8

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      -+|+|||+|..|+-+|..+++.|. +|.|+++.
T Consensus        13 ~dvvvvG~G~aG~~aa~~~~~~g~-~v~~iek~   44 (581)
T PRK06134         13 CDVLVIGSGAAGLSAAVTAAWHGL-KVIVVEKD   44 (581)
T ss_pred             cCEEEECcCHHHHHHHHHHHHCCC-eEEEEecC
Confidence            359999999999999999999997 69999974

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=97.05  E-value=0.0011  Score=58.74  Aligned_cols=97  Identities=15%  Similarity=0.129  Sum_probs=65.0

Q ss_pred             CcceEEEEcCChhHHHHHHH-------HHHcCCceEEEEEeecCCcCCCCHH----HHHHHHHcCcEEEeCCcceEEEcc
Q psy16200         68 LKGTVIVLGAGDTAFDCATS-------ALRCGANKVLVVFRKGCTNIRAVPE----EVQLAWEEKCEFLPFMSPVQVDVK  136 (183)
Q Consensus        68 ~~~~VvViGgG~~g~e~A~~-------l~~~G~~~V~lv~r~~~~~~~~~~~----~~~~~~~~gv~~~~~~~~~~i~~~  136 (183)
                      .++..+++|+++++++.+..       +++.|+ +|+++..+..........    ....+++.|+++++++.+.++..+
T Consensus       159 ~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~g~~~~~~L~~~~~~~gv~v~~~t~v~~l~~~  237 (557)
T PRK07843        159 VPLNMVVMQQDYVWLNLLKRHPRGVLRALKVGA-RTLWAKATGKNLLGMGQALAAGLRIGLQRAGVPVLLNTPLTDLYVE  237 (557)
T ss_pred             ccccccccHHHHHHHHhhhcCchhHHHHHHHHH-HHHHHhccCCCcccCcHHHHHHHHHHHHcCCCEEEeCCEEEEEEEe
Confidence            34557899999999998865       667776 477655432211111111    123456779999999999998766


Q ss_pred             CCcEEEEEEEEeeecCCCCeecCCCceEEEECC-EEEEcccc
Q psy16200        137 DNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKAN-YIISAFGS  177 (183)
Q Consensus       137 ~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D-~Vi~a~G~  177 (183)
                      +++|.++.+.            .+++...+.++ .||+|+|-
T Consensus       238 ~g~v~Gv~~~------------~~g~~~~i~A~~~VIlAtGG  267 (557)
T PRK07843        238 DGRVTGVHAA------------ESGEPQLIRARRGVILASGG  267 (557)
T ss_pred             CCEEEEEEEE------------eCCcEEEEEeceeEEEccCC
Confidence            6788888763            24556788885 68886654

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=97.02  E-value=0.0086  Score=52.21  Aligned_cols=29  Identities=24%  Similarity=0.376  Sum_probs=27.1

Q ss_pred             EEEEcCChhHHHHHHHHHHc-CCceEEEEEe
Q psy16200         72 VIVLGAGDTAFDCATSALRC-GANKVLVVFR  101 (183)
Q Consensus        72 VvViGgG~~g~e~A~~l~~~-G~~~V~lv~r  101 (183)
                      |+|||||.-|..+|..++++ |. +|.||++
T Consensus         6 viVIG~G~~G~~aA~~aa~~~g~-~V~lie~   35 (486)
T TIGR01423         6 LVVIGAGSGGLEAGWNAATLYKK-RVAVIDV   35 (486)
T ss_pred             EEEECCChHHHHHHHHHHHhcCC-EEEEEec
Confidence            99999999999999999996 76 7999996

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=97.01  E-value=0.0089  Score=50.22  Aligned_cols=32  Identities=34%  Similarity=0.435  Sum_probs=28.3

Q ss_pred             EEEEcCChhHHHHHHHH--HHcCCceEEEEEeecC
Q psy16200         72 VIVLGAGDTAFDCATSA--LRCGANKVLVVFRKGC  104 (183)
Q Consensus        72 VvViGgG~~g~e~A~~l--~~~G~~~V~lv~r~~~  104 (183)
                      |+|||||..|+-+|..|  ++.|. +|.+|++...
T Consensus         2 viIvGaGpAGlslA~~l~~~~~g~-~Vllid~~~~   35 (374)
T PF05834_consen    2 VIIVGAGPAGLSLARRLADARPGL-SVLLIDPKPK   35 (374)
T ss_pred             EEEECCcHHHHHHHHHHHhcCCCC-EEEEEcCCcc
Confidence            89999999999999999  77886 7999987643

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=96.99  E-value=0.017  Score=51.88  Aligned_cols=30  Identities=23%  Similarity=0.457  Sum_probs=26.9

Q ss_pred             EEEEcCChhHHHHHHHHH----HcCCceEEEEEee
Q psy16200         72 VIVLGAGDTAFDCATSAL----RCGANKVLVVFRK  102 (183)
Q Consensus        72 VvViGgG~~g~e~A~~l~----~~G~~~V~lv~r~  102 (183)
                      |+|||+|..|+-+|..++    +.|+ +|.|+++.
T Consensus         2 VlVIGsG~AGL~AAl~Aa~~~~e~G~-~VilieK~   35 (614)
T TIGR02061         2 LLIVGGGMGGCGAAFEAVYWGDKKGL-KIVLVEKA   35 (614)
T ss_pred             EEEECCCHHHHHHHHHHHhhhhhCCC-eEEEEEcc
Confidence            899999999999999998    6787 69999873

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=96.99  E-value=0.0084  Score=51.26  Aligned_cols=29  Identities=34%  Similarity=0.430  Sum_probs=26.2

Q ss_pred             EEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         74 VLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        74 ViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      |||+|..|+-+|..+++.|+ +|.++++.+
T Consensus         1 VVG~G~AGl~AA~~Aa~~Ga-~V~vlEK~~   29 (432)
T TIGR02485         1 VIGGGLAGLCAAIEARRAGA-SVLLLEAAP   29 (432)
T ss_pred             CCcccHHHHHHHHHHHhCCC-cEEEEeCCC
Confidence            79999999999999999997 699999854

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>KOG0029|consensus

Probab=96.99  E-value=0.00099  Score=58.19  Aligned_cols=34  Identities=32%  Similarity=0.396  Sum_probs=31.1

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC  104 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~  104 (183)
                      ++|+|||||..|+-+|+.|.++|. +|++++-|++
T Consensus        16 ~~VIVIGAGiaGLsAArqL~~~G~-~V~VLEARdR   49 (501)
T KOG0029|consen   16 KKVIVIGAGLAGLSAARQLQDFGF-DVLVLEARDR   49 (501)
T ss_pred             CcEEEECCcHHHHHHHHHHHHcCC-ceEEEeccCC
Confidence            469999999999999999999998 6999998765

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=96.98  E-value=0.014  Score=54.57  Aligned_cols=31  Identities=32%  Similarity=0.480  Sum_probs=28.3

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      .|+|||||..|+-+|..+++.|. +|.|+++.
T Consensus        15 DVlVVG~G~AGl~AAl~Aa~~G~-~V~lleK~   45 (897)
T PRK13800         15 DVLVIGGGTAGTMAALTAAEHGA-NVLLLEKA   45 (897)
T ss_pred             CEEEECcCHHHHHHHHHHHHCCC-eEEEEecc
Confidence            49999999999999999999997 69999864

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=96.96  E-value=0.0011  Score=56.00  Aligned_cols=32  Identities=31%  Similarity=0.339  Sum_probs=29.7

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      +|+|||||.+|+-+|..|++.|. +|++++|..
T Consensus         3 ~vvIIGaG~~G~~~A~~La~~g~-~V~vle~~~   34 (410)
T PRK12409          3 HIAVIGAGITGVTTAYALAQRGY-QVTVFDRHR   34 (410)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCC
Confidence            69999999999999999999996 799999864

>KOG1336|consensus

Probab=96.93  E-value=0.007  Score=51.92  Aligned_cols=93  Identities=17%  Similarity=0.168  Sum_probs=63.7

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCC-ceEEEEEeecCCcCCCCHHH----------------HHHHHHcCcEEEeCCcceE
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGA-NKVLVVFRKGCTNIRAVPEE----------------VQLAWEEKCEFLPFMSPVQ  132 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~-~~V~lv~r~~~~~~~~~~~~----------------~~~~~~~gv~~~~~~~~~~  132 (183)
                      ..++|+|||..|.=++.++.+.|- ...+++.++..  .|..+..                -+..++.||++++++.+++
T Consensus        75 r~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~--~pydr~~Ls~~~~~~~~~~a~r~~e~Yke~gIe~~~~t~v~~  152 (478)
T KOG1336|consen   75 RHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYL--LPYDRARLSKFLLTVGEGLAKRTPEFYKEKGIELILGTSVVK  152 (478)
T ss_pred             ceEEEEcCCchhhhhHhhHHhhCCCcceEEEecccc--CcccchhcccceeeccccccccChhhHhhcCceEEEcceeEE
Confidence            459999999999999999988762 35788876532  3332211                1234678999999999888


Q ss_pred             EEccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccccccCC
Q psy16200        133 VDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDN  182 (183)
Q Consensus       133 i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~  182 (183)
                      +.-....|   .+               ++.+.++.|.+++|+|..|+..
T Consensus       153 ~D~~~K~l---~~---------------~~Ge~~kys~LilATGs~~~~l  184 (478)
T KOG1336|consen  153 ADLASKTL---VL---------------GNGETLKYSKLIIATGSSAKTL  184 (478)
T ss_pred             eeccccEE---Ee---------------CCCceeecceEEEeecCccccC
Confidence            75432222   22               2345889999999999966543

>KOG2404|consensus

Probab=96.92  E-value=0.0073  Score=49.80  Aligned_cols=47  Identities=15%  Similarity=0.237  Sum_probs=38.3

Q ss_pred             cEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccccc
Q psy16200        122 CEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTL  179 (183)
Q Consensus       122 v~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p  179 (183)
                      +.+..++.+..|...+++|.+|++.+           ..|+...+-.|.||+|+|--.
T Consensus       160 ~ki~~nskvv~il~n~gkVsgVeymd-----------~sgek~~~~~~~VVlatGGf~  206 (477)
T KOG2404|consen  160 VKILLNSKVVDILRNNGKVSGVEYMD-----------ASGEKSKIIGDAVVLATGGFG  206 (477)
T ss_pred             HhhhhcceeeeeecCCCeEEEEEEEc-----------CCCCccceecCceEEecCCcC
Confidence            57888999999987788999998853           467777888999999998544

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=96.89  E-value=0.017  Score=55.42  Aligned_cols=31  Identities=35%  Similarity=0.626  Sum_probs=28.6

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      .|+|||+|..|+-+|..+++.|+ +|.++++.
T Consensus       411 DVvVVG~G~AGl~AAi~Aae~Ga-~VivlEK~  441 (1167)
T PTZ00306        411 RVIVVGGGLAGCSAAIEAASCGA-QVILLEKE  441 (1167)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC-cEEEEEcc
Confidence            49999999999999999999998 69999974

>PRK09077 L-aspartate oxidase; Provisional

Probab=96.86  E-value=0.019  Score=50.58  Aligned_cols=31  Identities=19%  Similarity=0.351  Sum_probs=26.9

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      .|+|||+|..|+-+|..+++. + +|.|+++..
T Consensus        10 DVlVVG~G~AGl~AA~~aa~~-~-~VilveK~~   40 (536)
T PRK09077         10 DVLIIGSGAAGLSLALRLAEH-R-RVAVLSKGP   40 (536)
T ss_pred             CEEEECchHHHHHHHHHHHHC-C-CEEEEeccC
Confidence            499999999999999999886 6 699998743

>KOG0399|consensus

Probab=96.83  E-value=0.0048  Score=58.07  Aligned_cols=62  Identities=21%  Similarity=0.228  Sum_probs=48.5

Q ss_pred             CcceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCCc------CCC---CH----HHHHHHHHcCcEEEeCCcc
Q psy16200         68 LKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTN------IRA---VP----EEVQLAWEEKCEFLPFMSP  130 (183)
Q Consensus        68 ~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~~------~~~---~~----~~~~~~~~~gv~~~~~~~~  130 (183)
                      -+++|+|||.|..|+-+|..|.+.|. .|++-+|+++..      .|.   ..    ..++.+.++||.|.+|+.+
T Consensus      1784 tg~~vaiigsgpaglaaadqlnk~gh-~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~~egi~f~tn~ei 1858 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNKAGH-TVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQEGIRFVTNTEI 1858 (2142)
T ss_pred             cCcEEEEEccCchhhhHHHHHhhcCc-EEEEEEecCCcCceeeecCCccchhHHHHHHHHHHHHhhCceEEeeccc
Confidence            45679999999999999999999996 799999987621      122   21    2344568899999999776

>PRK07233 hypothetical protein; Provisional

Probab=96.81  E-value=0.0017  Score=54.86  Aligned_cols=33  Identities=18%  Similarity=0.256  Sum_probs=30.1

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC  104 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~  104 (183)
                      ||+|||||..|+-+|..|++.|. +|+|++++++
T Consensus         1 ~vvVIGaGiaGL~aA~~L~~~G~-~v~vlE~~~~   33 (434)
T PRK07233          1 KIAIVGGGIAGLAAAYRLAKRGH-EVTVFEADDQ   33 (434)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC-cEEEEEeCCC
Confidence            58999999999999999999996 6999998764

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=96.76  E-value=0.0045  Score=47.89  Aligned_cols=32  Identities=34%  Similarity=0.526  Sum_probs=28.8

Q ss_pred             cceEEEEcCChhHHHHHHHHHHcCCceEEEEEe
Q psy16200         69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFR  101 (183)
Q Consensus        69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r  101 (183)
                      +++|+|||||.+|.--+..|.+.|+ +|+++.+
T Consensus         9 gk~vlVvGgG~va~rk~~~Ll~~ga-~VtVvsp   40 (205)
T TIGR01470         9 GRAVLVVGGGDVALRKARLLLKAGA-QLRVIAE   40 (205)
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCC-EEEEEcC
Confidence            4569999999999999999999998 6999964

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=96.76  E-value=0.002  Score=54.92  Aligned_cols=34  Identities=21%  Similarity=0.285  Sum_probs=29.6

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcC--CceEEEEEeecC
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCG--ANKVLVVFRKGC  104 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G--~~~V~lv~r~~~  104 (183)
                      ++|+|||||..|+-+|..|++.|  . +|+|++.+++
T Consensus         1 ~~v~IVGaGiaGL~aA~~L~~~G~~~-~V~vlEa~~~   36 (451)
T PRK11883          1 KKVAIIGGGITGLSAAYRLHKKGPDA-DITLLEASDR   36 (451)
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCCCC-CEEEEEcCCC
Confidence            36999999999999999999987  5 6999997553

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=96.75  E-value=0.0047  Score=53.39  Aligned_cols=62  Identities=24%  Similarity=0.249  Sum_probs=47.5

Q ss_pred             CcceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCCc------CCCC-------HHHHHHHHHcCcEEEeCCcc
Q psy16200         68 LKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTN------IRAV-------PEEVQLAWEEKCEFLPFMSP  130 (183)
Q Consensus        68 ~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~~------~~~~-------~~~~~~~~~~gv~~~~~~~~  130 (183)
                      .+++|+|||+|.-|+.+|..|++.|. .|+++++.+..-      .|..       +.+++.+.+.|++|+.+..+
T Consensus       122 tg~~VaviGaGPAGl~~a~~L~~~G~-~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~v  196 (457)
T COG0493         122 TGKKVAVIGAGPAGLAAADDLSRAGH-DVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFKLNVRV  196 (457)
T ss_pred             CCCEEEEECCCchHhhhHHHHHhCCC-eEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcCeEEEEcceE
Confidence            34679999999999999999999997 799998865420      1211       23455678899999988765

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=96.73  E-value=0.0022  Score=53.47  Aligned_cols=32  Identities=31%  Similarity=0.316  Sum_probs=29.0

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      +|+|||||.+|+-+|..|++.|. +|+|+++..
T Consensus         2 dvvIIGaGi~G~s~A~~La~~g~-~V~l~e~~~   33 (380)
T TIGR01377         2 DVIVVGAGIMGCFAAYHLAKHGK-KTLLLEQFD   33 (380)
T ss_pred             cEEEECCCHHHHHHHHHHHHCCC-eEEEEeccC
Confidence            38999999999999999999996 699999853

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=96.69  E-value=0.0024  Score=53.14  Aligned_cols=32  Identities=31%  Similarity=0.289  Sum_probs=29.3

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      +|+|||||.+|+-+|..|++.|. +|+|++++.
T Consensus         5 dv~IIGgGi~G~s~A~~L~~~g~-~V~lie~~~   36 (376)
T PRK11259          5 DVIVIGLGSMGSAAGYYLARRGL-RVLGLDRFM   36 (376)
T ss_pred             cEEEECCCHHHHHHHHHHHHCCC-eEEEEeccc
Confidence            49999999999999999999996 799999864

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=96.68  E-value=0.0016  Score=44.74  Aligned_cols=33  Identities=36%  Similarity=0.416  Sum_probs=28.9

Q ss_pred             cceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      +++|+|||||.+|..-+..|.+.|+ +|+++.+.
T Consensus         7 ~~~vlVvGgG~va~~k~~~Ll~~gA-~v~vis~~   39 (103)
T PF13241_consen    7 GKRVLVVGGGPVAARKARLLLEAGA-KVTVISPE   39 (103)
T ss_dssp             T-EEEEEEESHHHHHHHHHHCCCTB-EEEEEESS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC-EEEEECCc
Confidence            3569999999999999999999998 79999754

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=96.63  E-value=0.015  Score=50.20  Aligned_cols=32  Identities=22%  Similarity=0.315  Sum_probs=28.4

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC  104 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~  104 (183)
                      .|+|||+|..|+-+|..|.+. . +|+++.+.+.
T Consensus         9 dV~IiGsG~AGL~~AL~L~~~-~-~V~vltk~~~   40 (518)
T COG0029           9 DVLIIGSGLAGLTAALSLAPS-F-RVTVLTKGPL   40 (518)
T ss_pred             cEEEECCcHHHHHHHHhCCCC-C-cEEEEeCCCC
Confidence            599999999999999999987 4 6999998654

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=96.61  E-value=0.0046  Score=44.48  Aligned_cols=34  Identities=32%  Similarity=0.450  Sum_probs=31.1

Q ss_pred             cceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      +++++|||+|-+|-.++..|...|+++|+++.|.
T Consensus        12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt   45 (135)
T PF01488_consen   12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRT   45 (135)
T ss_dssp             TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred             CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence            4669999999999999999999999889999875

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=96.55  E-value=0.0033  Score=53.09  Aligned_cols=31  Identities=32%  Similarity=0.422  Sum_probs=28.9

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      +|+|||||.+|+-+|..|++.|. +|+|+++.
T Consensus         2 ~v~IVG~Gi~Gls~A~~l~~~g~-~V~vle~~   32 (416)
T PRK00711          2 RVVVLGSGVIGVTSAWYLAQAGH-EVTVIDRQ   32 (416)
T ss_pred             EEEEECCcHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            59999999999999999999996 79999985

>PTZ00188 adrenodoxin reductase; Provisional

Probab=96.54  E-value=0.0054  Score=53.39  Aligned_cols=36  Identities=25%  Similarity=0.238  Sum_probs=30.3

Q ss_pred             CcceEEEEcCChhHHHHHHHHH-HcCCceEEEEEeecC
Q psy16200         68 LKGTVIVLGAGDTAFDCATSAL-RCGANKVLVVFRKGC  104 (183)
Q Consensus        68 ~~~~VvViGgG~~g~e~A~~l~-~~G~~~V~lv~r~~~  104 (183)
                      .++||+|||+|..|+.+|..|+ +.|. +|+|+++.+.
T Consensus        38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~-~VtlfEk~p~   74 (506)
T PTZ00188         38 KPFKVGIIGAGPSALYCCKHLLKHERV-KVDIFEKLPN   74 (506)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHhcCC-eEEEEecCCC
Confidence            4567999999999999999764 6686 6999999765

>KOG2852|consensus

Probab=96.54  E-value=0.0076  Score=48.92  Aligned_cols=33  Identities=12%  Similarity=0.118  Sum_probs=28.5

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcC-----CceEEEEEee
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCG-----ANKVLVVFRK  102 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G-----~~~V~lv~r~  102 (183)
                      ++|+|+|||.+|+-+|.+|++++     --.++|++.+
T Consensus        11 k~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~   48 (380)
T KOG2852|consen   11 KKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESK   48 (380)
T ss_pred             eEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeec
Confidence            66999999999999999999886     1269999874

>PLN02268 probable polyamine oxidase

Probab=96.49  E-value=0.0039  Score=53.14  Aligned_cols=33  Identities=24%  Similarity=0.317  Sum_probs=29.3

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC  104 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~  104 (183)
                      +|+|||||..|+-+|..|.+.|. +|+|++.+++
T Consensus         2 ~VvVIGaGisGL~aA~~L~~~g~-~v~vlEa~~r   34 (435)
T PLN02268          2 SVIVIGGGIAGIAAARALHDASF-KVTLLESRDR   34 (435)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCC-eEEEEeCCCC
Confidence            59999999999999999999996 6999996543

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=96.48  E-value=0.0039  Score=51.76  Aligned_cols=31  Identities=35%  Similarity=0.457  Sum_probs=28.5

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      +|+|||||.+|+-+|..|++.|. +|+++++.
T Consensus         2 dv~IIG~Gi~G~s~A~~L~~~G~-~V~vle~~   32 (365)
T TIGR03364         2 DLIIVGAGILGLAHAYAAARRGL-SVTVIERS   32 (365)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC-eEEEEeCC
Confidence            38999999999999999999996 69999974

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=96.46  E-value=0.02  Score=48.10  Aligned_cols=31  Identities=19%  Similarity=0.153  Sum_probs=28.0

Q ss_pred             EEEEcCChhHHHHHHHHHHc--CCceEEEEEeec
Q psy16200         72 VIVLGAGDTAFDCATSALRC--GANKVLVVFRKG  103 (183)
Q Consensus        72 VvViGgG~~g~e~A~~l~~~--G~~~V~lv~r~~  103 (183)
                      |+|||||..|+.+|..|++.  |. +|.++++++
T Consensus         2 viIvGaG~AGl~lA~~L~~~~~g~-~V~lle~~~   34 (370)
T TIGR01789         2 CIIVGGGLAGGLIALRLQRARPDF-RIRVIEAGR   34 (370)
T ss_pred             EEEECccHHHHHHHHHHHhcCCCC-eEEEEeCCC
Confidence            89999999999999999986  86 699999865

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=96.45  E-value=0.005  Score=51.28  Aligned_cols=33  Identities=24%  Similarity=0.275  Sum_probs=29.8

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      .+|+|||||.+|+-+|..|++.|. +|+++++..
T Consensus         5 ~~vvVIGgGi~Gls~A~~La~~G~-~V~vie~~~   37 (387)
T COG0665           5 MDVVIIGGGIVGLSAAYYLAERGA-DVTVLEAGE   37 (387)
T ss_pred             ceEEEECCcHHHHHHHHHHHHcCC-EEEEEecCc
Confidence            459999999999999999999997 799999743

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=96.42  E-value=0.0057  Score=45.28  Aligned_cols=31  Identities=32%  Similarity=0.454  Sum_probs=27.9

Q ss_pred             cceEEEEcCChhHHHHHHHHHHcCCceEEEEE
Q psy16200         69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVF  100 (183)
Q Consensus        69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~  100 (183)
                      +++|+|||||.+|..-+..|.+.|+ +|++|.
T Consensus        13 ~~~vlVvGGG~va~rka~~Ll~~ga-~V~VIs   43 (157)
T PRK06719         13 NKVVVIIGGGKIAYRKASGLKDTGA-FVTVVS   43 (157)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC-EEEEEc
Confidence            3569999999999999999999998 699994

>KOG2311|consensus

Probab=96.41  E-value=0.016  Score=50.11  Aligned_cols=30  Identities=33%  Similarity=0.628  Sum_probs=26.8

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEe
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFR  101 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r  101 (183)
                      .|+|||||-.|+|+|..+++.|+ +.+|++.
T Consensus        30 dVvVIGgGHAG~EAAaAaaR~Ga-~TlLlT~   59 (679)
T KOG2311|consen   30 DVVVIGGGHAGCEAAAAAARLGA-RTLLLTH   59 (679)
T ss_pred             cEEEECCCccchHHHHHHHhcCC-ceEEeec
Confidence            49999999999999999999998 5777765

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=96.40  E-value=0.0044  Score=52.22  Aligned_cols=32  Identities=19%  Similarity=0.398  Sum_probs=29.1

Q ss_pred             eEEEEcCChhHHHHHHHHHHc--CCceEEEEEeec
Q psy16200         71 TVIVLGAGDTAFDCATSALRC--GANKVLVVFRKG  103 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~--G~~~V~lv~r~~  103 (183)
                      +|+|||||.+|+-+|..|+++  |. +|+|+++..
T Consensus         4 dVvIIGgGi~G~s~A~~La~~~~g~-~V~llE~~~   37 (393)
T PRK11728          4 DFVIIGGGIVGLSTAMQLQERYPGA-RIAVLEKES   37 (393)
T ss_pred             cEEEECCcHHHHHHHHHHHHhCCCC-eEEEEeCCC
Confidence            499999999999999999998  86 799999863

>PRK07208 hypothetical protein; Provisional

Probab=96.35  E-value=0.0052  Score=53.04  Aligned_cols=34  Identities=26%  Similarity=0.401  Sum_probs=30.2

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC  104 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~  104 (183)
                      ++|+|||||.+|+-+|..|.+.|. +|++++++++
T Consensus         5 ~~vvIiGaGisGL~aA~~L~~~g~-~v~v~E~~~~   38 (479)
T PRK07208          5 KSVVIIGAGPAGLTAAYELLKRGY-PVTVLEADPV   38 (479)
T ss_pred             CcEEEECcCHHHHHHHHHHHHCCC-cEEEEecCCC
Confidence            459999999999999999999997 6999998653

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=96.33  E-value=0.012  Score=46.03  Aligned_cols=31  Identities=26%  Similarity=0.455  Sum_probs=27.7

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEe
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFR  101 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r  101 (183)
                      ++|+|||||.+|.-=+..|.+.|+ +|++|..
T Consensus        26 ~~VLVVGGG~VA~RK~~~Ll~~gA-~VtVVap   56 (223)
T PRK05562         26 IKVLIIGGGKAAFIKGKTFLKKGC-YVYILSK   56 (223)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC-EEEEEcC
Confidence            469999999999999999999998 6999953

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=96.33  E-value=0.0051  Score=53.84  Aligned_cols=32  Identities=25%  Similarity=0.335  Sum_probs=29.4

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      .|+|||||.+|+-+|..|+++|. +|+|+++.+
T Consensus         8 DVvIIGGGi~G~~~A~~la~rGl-~V~LvEk~d   39 (508)
T PRK12266          8 DLLVIGGGINGAGIARDAAGRGL-SVLLCEQDD   39 (508)
T ss_pred             CEEEECcCHHHHHHHHHHHHCCC-eEEEEecCC
Confidence            49999999999999999999997 699999853

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=96.33  E-value=0.0063  Score=46.94  Aligned_cols=32  Identities=28%  Similarity=0.474  Sum_probs=28.5

Q ss_pred             cceEEEEcCChhHHHHHHHHHHcCCceEEEEEe
Q psy16200         69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFR  101 (183)
Q Consensus        69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r  101 (183)
                      +++|+|||||.+|.-.+..|.+.|+ +|+++.+
T Consensus        10 ~k~vLVIGgG~va~~ka~~Ll~~ga-~V~VIs~   41 (202)
T PRK06718         10 NKRVVIVGGGKVAGRRAITLLKYGA-HIVVISP   41 (202)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC-eEEEEcC
Confidence            3569999999999999999999997 6999964

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=96.31  E-value=0.0057  Score=53.28  Aligned_cols=33  Identities=33%  Similarity=0.452  Sum_probs=30.1

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC  104 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~  104 (183)
                      +|+|||||.-|+-+|.+|++.|. +|++++|+..
T Consensus         5 dvvVIGaG~~GL~aAa~LA~~G~-~V~VlE~~~~   37 (487)
T COG1233           5 DVVVIGAGLNGLAAAALLARAGL-KVTVLEKNDR   37 (487)
T ss_pred             cEEEECCChhHHHHHHHHHhCCC-EEEEEEecCC
Confidence            59999999999999999999997 7999998654

>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

Probab=96.21  E-value=0.0081  Score=49.36  Aligned_cols=34  Identities=26%  Similarity=0.397  Sum_probs=30.6

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCC
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCT  105 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~  105 (183)
                      +.+|||+|..|.-+|..|+++| ++|.||++|+..
T Consensus         3 d~lIVGaGlsG~V~A~~a~~~g-k~VLIvekR~HI   36 (374)
T COG0562           3 DYLIVGAGLSGAVIAEVAAQLG-KRVLIVEKRNHI   36 (374)
T ss_pred             cEEEECCchhHHHHHHHHHHcC-CEEEEEeccccC
Confidence            3789999999999999999999 579999999764

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=96.18  E-value=0.0072  Score=51.82  Aligned_cols=34  Identities=15%  Similarity=0.153  Sum_probs=30.0

Q ss_pred             ceEEEEcCChhHHHHHHHHHHc----CCceEEEEEeecC
Q psy16200         70 GTVIVLGAGDTAFDCATSALRC----GANKVLVVFRKGC  104 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~----G~~~V~lv~r~~~  104 (183)
                      .+|+|||||..|+-+|..|++.    |. +|+|++.+++
T Consensus         3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~-~v~vlE~~~r   40 (462)
T TIGR00562         3 KHVVIIGGGISGLCAAYYLEKEIPELPV-ELTLVEASDR   40 (462)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCCCCC-cEEEEEcCCc
Confidence            3599999999999999999998    86 6999998654

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=96.17  E-value=0.0076  Score=52.31  Aligned_cols=34  Identities=24%  Similarity=0.360  Sum_probs=30.5

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC  104 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~  104 (183)
                      ++|+|||||..|+-+|..|++.|. +|++++++..
T Consensus         2 ~dvvIIGaG~~GL~aa~~La~~G~-~v~vlE~~~~   35 (492)
T TIGR02733         2 TSVVVIGAGIAGLTAAALLAKRGY-RVTLLEQHAQ   35 (492)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCC-eEEEEecCCC
Confidence            459999999999999999999996 6999998753

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=96.16  E-value=0.0071  Score=51.26  Aligned_cols=34  Identities=15%  Similarity=0.133  Sum_probs=29.7

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC  104 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~  104 (183)
                      +|+|||||..|+-+|..|++.|.-+|+|++|++.
T Consensus         2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~   35 (414)
T TIGR03219         2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPA   35 (414)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCc
Confidence            5999999999999999999987325999999754

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=96.15  E-value=0.0067  Score=52.33  Aligned_cols=31  Identities=26%  Similarity=0.224  Sum_probs=28.2

Q ss_pred             eEEEEcCChhHHHHHHHHHHc--CCceEEEEEee
Q psy16200         71 TVIVLGAGDTAFDCATSALRC--GANKVLVVFRK  102 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~--G~~~V~lv~r~  102 (183)
                      +|+|||||.+|+-+|..|++.  |. +|+|+++.
T Consensus        26 DVvIIGgGi~Gls~A~~La~~~~G~-~V~vlE~~   58 (460)
T TIGR03329        26 DVCIVGGGFTGLWTAIMIKQQRPAL-DVLVLEAD   58 (460)
T ss_pred             CEEEECCCHHHHHHHHHHHHhCCCC-eEEEEeCC
Confidence            499999999999999999998  76 79999974

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>PLN02576 protoporphyrinogen oxidase

Probab=96.13  E-value=0.011  Score=51.21  Aligned_cols=34  Identities=29%  Similarity=0.337  Sum_probs=30.3

Q ss_pred             ceEEEEcCChhHHHHHHHHHHc-CCceEEEEEeecC
Q psy16200         70 GTVIVLGAGDTAFDCATSALRC-GANKVLVVFRKGC  104 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~-G~~~V~lv~r~~~  104 (183)
                      .+|+|||||..|+-+|..|++. |. +|+|++.+++
T Consensus        13 ~~v~IIGaGisGL~aA~~L~~~~g~-~v~vlEa~~r   47 (496)
T PLN02576         13 KDVAVVGAGVSGLAAAYALASKHGV-NVLVTEARDR   47 (496)
T ss_pred             CCEEEECcCHHHHHHHHHHHHhcCC-CEEEEecCCC
Confidence            4699999999999999999999 87 6999998653

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=96.13  E-value=0.0067  Score=44.76  Aligned_cols=31  Identities=26%  Similarity=0.261  Sum_probs=28.1

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      ||+|+|+|..|.-+|..|+..|. +|+|..|+
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~-~V~l~~~~   31 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGH-EVTLWGRD   31 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTE-EEEEETSC
T ss_pred             CEEEECcCHHHHHHHHHHHHcCC-EEEEEecc
Confidence            68999999999999999999995 79998764

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>TIGR02734 crtI_fam phytoene desaturase

Probab=96.12  E-value=0.0061  Score=53.01  Aligned_cols=32  Identities=28%  Similarity=0.323  Sum_probs=29.2

Q ss_pred             EEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200         72 VIVLGAGDTAFDCATSALRCGANKVLVVFRKGC  104 (183)
Q Consensus        72 VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~  104 (183)
                      |+|||||..|+-+|..|++.|. +|++++++.+
T Consensus         1 vvVIGaG~~GL~aA~~La~~G~-~V~VlE~~~~   32 (502)
T TIGR02734         1 AVVIGAGFGGLALAIRLAAAGI-PVTVVEQRDK   32 (502)
T ss_pred             CEEECcCHHHHHHHHHHHhCCC-cEEEEECCCC
Confidence            6899999999999999999996 7999998654

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=96.12  E-value=0.0026  Score=47.99  Aligned_cols=49  Identities=27%  Similarity=0.302  Sum_probs=32.7

Q ss_pred             hhCCCCEEEEccCCCCCcccCCCCCCccC----CCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEc
Q psy16200          7 RKDGYTAIFIGIGKPNANVIPIFQGLTEE----MGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLG   76 (183)
Q Consensus         7 ~~~~~davviATGa~~p~~l~i~gg~~~~----~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViG   76 (183)
                      .+..||+||||||+ .|+.+++| | .+.    ..+.++.+++..                  ...+++|+|||
T Consensus       107 ~~~~~d~lviAtG~-~~~~~~i~-g-~~~~~~~~~~~~~~~~~~~------------------~~~~~~v~VvG  159 (201)
T PF07992_consen  107 REIKYDYLVIATGS-RPRTPNIP-G-EEVAYFLRGVDDAQRFLEL------------------LESPKRVAVVG  159 (201)
T ss_dssp             EEEEEEEEEEESTE-EEEEESST-T-TTTECBTTSEEHHHHHHTH------------------SSTTSEEEEES
T ss_pred             eEecCCeeeecCcc-ccceeecC-C-Ccccccccccccccccccc------------------ccccccccccc
Confidence            34579999999998 48888999 5 322    345555544432                  22345899999

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>TIGR02731 phytoene_desat phytoene desaturase

Probab=96.11  E-value=0.0077  Score=51.68  Aligned_cols=33  Identities=24%  Similarity=0.403  Sum_probs=29.7

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC  104 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~  104 (183)
                      ||+|||||..|+-+|..|.+.|. +|++++++++
T Consensus         1 ~v~IiGaG~aGl~aA~~L~~~G~-~v~vlE~~~~   33 (453)
T TIGR02731         1 RVAIAGAGLAGLSCAKYLADAGH-TPIVLEARDV   33 (453)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC-cEEEEecCCC
Confidence            48999999999999999999997 6999998653

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=96.10  E-value=0.012  Score=49.58  Aligned_cols=32  Identities=25%  Similarity=0.372  Sum_probs=28.4

Q ss_pred             eEEEEcCChhHHHHHHHHHHc-CCceEEEEEee
Q psy16200         71 TVIVLGAGDTAFDCATSALRC-GANKVLVVFRK  102 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~-G~~~V~lv~r~  102 (183)
                      +|+|||||.+|+-+|..|++. |.++|++++++
T Consensus        32 dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~   64 (407)
T TIGR01373        32 DVIIVGGGGHGLATAYYLAKEHGITNVAVLEKG   64 (407)
T ss_pred             CEEEECCcHHHHHHHHHHHHhcCCCeEEEEEcc
Confidence            599999999999999999985 84479999985

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=96.10  E-value=0.0079  Score=51.74  Aligned_cols=34  Identities=21%  Similarity=0.280  Sum_probs=28.9

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcC------CceEEEEEeecC
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCG------ANKVLVVFRKGC  104 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G------~~~V~lv~r~~~  104 (183)
                      ++|+|||||.+|+-+|..|.+.|      . +|+|++.+++
T Consensus         2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~-~V~vlEa~~r   41 (463)
T PRK12416          2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDL-NLILVEKEEY   41 (463)
T ss_pred             CeEEEECCCHHHHHHHHHHHhhhhccCCCc-cEEEEecCCC
Confidence            45999999999999999999863      4 6999997654

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=96.09  E-value=0.013  Score=41.98  Aligned_cols=33  Identities=27%  Similarity=0.463  Sum_probs=30.1

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      .||+|+|+|-+|.++|..|++.|..+++|+...
T Consensus         3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d   35 (135)
T PF00899_consen    3 KRVLIIGAGGVGSEVAKNLARSGVGKITLVDDD   35 (135)
T ss_dssp             -EEEEESTSHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred             CEEEEECcCHHHHHHHHHHHHhCCCceeecCCc
Confidence            469999999999999999999999899999864

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=96.09  E-value=0.0071  Score=54.60  Aligned_cols=32  Identities=19%  Similarity=0.178  Sum_probs=29.6

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      +|+|||||.+|+-+|..|+++|. +|+|+++..
T Consensus       262 dVvIIGaGIaG~s~A~~La~~G~-~V~VlE~~~  293 (662)
T PRK01747        262 DAAIIGGGIAGAALALALARRGW-QVTLYEADE  293 (662)
T ss_pred             CEEEECccHHHHHHHHHHHHCCC-eEEEEecCC
Confidence            69999999999999999999997 699999863

>KOG0042|consensus

Probab=96.06  E-value=0.0097  Score=52.03  Aligned_cols=32  Identities=31%  Similarity=0.473  Sum_probs=29.1

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      .|+|||||.+|.-||.-++-+|- +|.||++.+
T Consensus        69 DVLIIGGGAtGaGcALDA~TRGL-ktaLVE~~D  100 (680)
T KOG0042|consen   69 DVLIIGGGATGAGCALDAATRGL-KTALVEAGD  100 (680)
T ss_pred             cEEEECCCccCcceeehhhcccc-eeEEEeccc
Confidence            39999999999999999999998 699999854

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=96.05  E-value=0.0088  Score=51.76  Aligned_cols=34  Identities=21%  Similarity=0.178  Sum_probs=31.4

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC  104 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~  104 (183)
                      +||+|+|||..|+.+|..|++.|. .|||.+++++
T Consensus         1 ~rVai~GaG~AgL~~a~~La~~g~-~vt~~ea~~~   34 (485)
T COG3349           1 MRVAIAGAGLAGLAAAYELADAGY-DVTLYEARDR   34 (485)
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCC-ceEEEeccCc
Confidence            479999999999999999999998 6999999875

>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle

Probab=96.03  E-value=0.13  Score=44.47  Aligned_cols=31  Identities=13%  Similarity=0.099  Sum_probs=27.0

Q ss_pred             EEEEcCChhHHHHHHHHHHcC-CceEEEEEee
Q psy16200         72 VIVLGAGDTAFDCATSALRCG-ANKVLVVFRK  102 (183)
Q Consensus        72 VvViGgG~~g~e~A~~l~~~G-~~~V~lv~r~  102 (183)
                      ||+||||.++..++..|.++- ..+++|++|.
T Consensus         6 VvLIGgGImsaTL~~~L~~l~p~~~I~i~Erl   37 (488)
T PF06039_consen    6 VVLIGGGIMSATLGYLLKELEPDWSIAIFERL   37 (488)
T ss_pred             EEEECchHHHHHHHHHHHHhCCCCeEEEEEec
Confidence            999999999999999999873 3479999983

The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process

>PRK07846 mycothione reductase; Reviewed

Probab=96.02  E-value=0.071  Score=46.00  Aligned_cols=28  Identities=14%  Similarity=0.260  Sum_probs=23.1

Q ss_pred             EEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         72 VIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        72 VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      |+|||||.-|..+|..  ..|. +|.||++.
T Consensus         4 ~vVIG~G~~g~~aa~~--~~G~-~V~lie~~   31 (451)
T PRK07846          4 LIIIGTGSGNSILDER--FADK-RIAIVEKG   31 (451)
T ss_pred             EEEECCCHHHHHHHHH--HCCC-eEEEEeCC
Confidence            8999999999877755  4585 79999974

>KOG2495|consensus

Probab=95.97  E-value=0.045  Score=46.70  Aligned_cols=101  Identities=17%  Similarity=0.228  Sum_probs=58.5

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCCcC-CCCH-------------HHHHHH-H-Hc-CcEEEeCCcceE
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNI-RAVP-------------EEVQLA-W-EE-KCEFLPFMSPVQ  132 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~~~-~~~~-------------~~~~~~-~-~~-gv~~~~~~~~~~  132 (183)
                      ++|||+|.|+.|+.+...+-..-- .|++|.+|..... |..+             +-+... . .. ++.++ ...-.+
T Consensus        56 k~vVVLGsGW~a~S~lk~ldts~Y-dV~vVSPRnyFlFTPLLpS~~vGTve~rSIvEPIr~i~r~k~~~~~y~-eAec~~  133 (491)
T KOG2495|consen   56 KRVVVLGSGWGAISLLKKLDTSLY-DVTVVSPRNYFLFTPLLPSTTVGTVELRSIVEPIRAIARKKNGEVKYL-EAECTK  133 (491)
T ss_pred             ceEEEEcCchHHHHHHHhcccccc-ceEEeccccceEEeeccCCccccceeehhhhhhHHHHhhccCCCceEE-ecccEe
Confidence            459999999999999988876644 6999988765211 2111             111111 1 11 23332 233334


Q ss_pred             EEccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccccccCC
Q psy16200        133 VDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDN  182 (183)
Q Consensus       133 i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~  182 (183)
                      +..+..+|   +++...  .+     ....+..+..|++|+|+|..||+-
T Consensus       134 iDp~~k~V---~~~s~t--~~-----~~~~e~~i~YDyLViA~GA~~~TF  173 (491)
T KOG2495|consen  134 IDPDNKKV---HCRSLT--AD-----SSDKEFVIGYDYLVIAVGAEPNTF  173 (491)
T ss_pred             ecccccEE---EEeeec--cC-----CCcceeeecccEEEEeccCCCCCC
Confidence            43322322   333211  11     124567889999999999999873

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=95.95  E-value=0.011  Score=44.77  Aligned_cols=32  Identities=31%  Similarity=0.313  Sum_probs=27.2

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      +|.|||+|.+|..+|..++..|. +|+++.+++
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~   32 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGY-EVTLYDRSP   32 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTS-EEEEE-SSH
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCC-cEEEEECCh
Confidence            58999999999999999999997 799998754

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]

Probab=95.95  E-value=0.024  Score=44.01  Aligned_cols=32  Identities=38%  Similarity=0.476  Sum_probs=28.5

Q ss_pred             cceEEEEcCChhHHHHHHHHHHcCCceEEEEEe
Q psy16200         69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFR  101 (183)
Q Consensus        69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r  101 (183)
                      +++|+|||||.+|.-=|+.|.+.|+ +|+++..
T Consensus        12 ~k~VlvvGgG~va~rKa~~ll~~ga-~v~Vvs~   43 (210)
T COG1648          12 GKKVLVVGGGSVALRKARLLLKAGA-DVTVVSP   43 (210)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCC-EEEEEcC
Confidence            3569999999999999999999998 7999854

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=95.92  E-value=0.025  Score=46.50  Aligned_cols=49  Identities=14%  Similarity=0.177  Sum_probs=38.1

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCCcCCCCHHHHHHHHHcCcEEEeCCc
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFMS  129 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~~~~~~~~~~~~~~~~gv~~~~~~~  129 (183)
                      ||.|+|+|.+|.=+|..|++.| ..|+++.|..+         ++.+.+.|..+.....
T Consensus         2 kI~IlGaGAvG~l~g~~L~~~g-~~V~~~~R~~~---------~~~l~~~GL~i~~~~~   50 (307)
T COG1893           2 KILILGAGAIGSLLGARLAKAG-HDVTLLVRSRR---------LEALKKKGLRIEDEGG   50 (307)
T ss_pred             eEEEECCcHHHHHHHHHHHhCC-CeEEEEecHHH---------HHHHHhCCeEEecCCC
Confidence            5899999999999999999999 58999987632         2455666776654433

>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase

Probab=95.88  E-value=0.012  Score=49.59  Aligned_cols=33  Identities=27%  Similarity=0.347  Sum_probs=29.4

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC  104 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~  104 (183)
                      +|+|||||..|+-+|..|++.|. +|+++++++.
T Consensus         3 DvvIIGaG~aGlsaA~~La~~G~-~V~viEk~~~   35 (377)
T TIGR00031         3 DYIIVGAGLSGIVLANILAQLNK-RVLVVEKRNH   35 (377)
T ss_pred             cEEEECCCHHHHHHHHHHHhCCC-eEEEEecCCC
Confidence            48999999999999999999986 7999998653

The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.

>KOG2415|consensus

Probab=95.86  E-value=0.067  Score=45.73  Aligned_cols=63  Identities=22%  Similarity=0.217  Sum_probs=43.1

Q ss_pred             HHHHcCcEEEeCCcceEEEc-cCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEccccc
Q psy16200        116 LAWEEKCEFLPFMSPVQVDV-KDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGST  178 (183)
Q Consensus       116 ~~~~~gv~~~~~~~~~~i~~-~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~  178 (183)
                      ++++.||+++.+....++.- +++.|.+|-..++..+.+|...+.=....++-+-.-|+|=|-+
T Consensus       192 kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D~GI~k~G~pKd~FerGme~hak~TifAEGc~  255 (621)
T KOG2415|consen  192 KAEELGVEIYPGFAASEVLYDEDGSVKGIATNDVGISKDGAPKDTFERGMEFHAKVTIFAEGCH  255 (621)
T ss_pred             HHHhhCceeccccchhheeEcCCCcEeeEeeccccccCCCCccccccccceecceeEEEecccc
Confidence            45778999999999988764 6788999977766655665543221222466677777776643

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.83  E-value=0.04  Score=47.21  Aligned_cols=54  Identities=26%  Similarity=0.206  Sum_probs=38.2

Q ss_pred             cceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCCcCCCCHHHHHHHHHcCcEEEeC
Q psy16200         69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPF  127 (183)
Q Consensus        69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~~~~~~~~~~~~~~~~gv~~~~~  127 (183)
                      +++|+|+|+|-+|+.+|+.|++.|+ +|++..++..   + .......+.+.|+.+..+
T Consensus         5 ~k~v~v~G~g~~G~s~a~~l~~~G~-~V~~~d~~~~---~-~~~~~~~l~~~g~~~~~~   58 (447)
T PRK02472          5 NKKVLVLGLAKSGYAAAKLLHKLGA-NVTVNDGKPF---S-ENPEAQELLEEGIKVICG   58 (447)
T ss_pred             CCEEEEEeeCHHHHHHHHHHHHCCC-EEEEEcCCCc---c-chhHHHHHHhcCCEEEeC
Confidence            3569999999999999999999998 6999875421   1 112233455667776544

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=95.80  E-value=0.0099  Score=48.65  Aligned_cols=34  Identities=32%  Similarity=0.429  Sum_probs=30.9

Q ss_pred             CcceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         68 LKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        68 ~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      .+.+|+|||||.+|.+.|+.+.-+|+ +|++++++
T Consensus       167 ~~~kv~iiGGGvvgtnaAkiA~glgA-~Vtild~n  200 (371)
T COG0686         167 LPAKVVVLGGGVVGTNAAKIAIGLGA-DVTILDLN  200 (371)
T ss_pred             CCccEEEECCccccchHHHHHhccCC-eeEEEecC
Confidence            45679999999999999999999998 69999976

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=95.80  E-value=0.013  Score=52.86  Aligned_cols=33  Identities=30%  Similarity=0.296  Sum_probs=30.5

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      .+|+|||||..|+-+|..|++.|. +|+|++|.+
T Consensus        82 ~~VlIVGgGIaGLalAlaL~r~Gi-~V~V~Er~~  114 (668)
T PLN02927         82 SRVLVAGGGIGGLVFALAAKKKGF-DVLVFEKDL  114 (668)
T ss_pred             CCEEEECCCHHHHHHHHHHHhcCC-eEEEEeccc
Confidence            469999999999999999999998 699999865

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=95.80  E-value=0.011  Score=50.66  Aligned_cols=31  Identities=23%  Similarity=0.297  Sum_probs=28.3

Q ss_pred             EEEEcCChhHHHHHHHHHH----cCCceEEEEEeec
Q psy16200         72 VIVLGAGDTAFDCATSALR----CGANKVLVVFRKG  103 (183)
Q Consensus        72 VvViGgG~~g~e~A~~l~~----~G~~~V~lv~r~~  103 (183)
                      |+|||||.+|+-+|..|++    .|. +|+++++++
T Consensus         3 V~IVGaGp~Gl~~A~~La~~~~~~G~-~v~viE~~~   37 (437)
T TIGR01989         3 VVIVGGGPVGLALAAALGNNPLTKDL-KVLLLDAVD   37 (437)
T ss_pred             EEEECCcHHHHHHHHHHhcCcccCCC-eEEEEeCCC
Confidence            9999999999999999998    787 699999843

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>COG3573 Predicted oxidoreductase [General function prediction only]

Probab=95.78  E-value=0.11  Score=43.40  Aligned_cols=33  Identities=33%  Similarity=0.530  Sum_probs=28.8

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      ..|+|+|+|..|+-+|..|+..|. +|.++...+
T Consensus         6 ~dvivvgaglaglvaa~elA~aG~-~V~ildQEg   38 (552)
T COG3573           6 ADVIVVGAGLAGLVAAAELADAGK-RVLILDQEG   38 (552)
T ss_pred             ccEEEECccHHHHHHHHHHHhcCc-eEEEEcccc
Confidence            349999999999999999999995 799998644

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=95.71  E-value=0.081  Score=44.07  Aligned_cols=33  Identities=24%  Similarity=0.249  Sum_probs=24.3

Q ss_pred             EEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200         72 VIVLGAGDTAFDCATSALRCGANKVLVVFRKGC  104 (183)
Q Consensus        72 VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~  104 (183)
                      ++.||.|..++.+|..|.+.+.-++.++++++.
T Consensus         5 ~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~   37 (341)
T PF13434_consen    5 LIGIGFGPFNLSLAALLEEHGDLKALFLERRPS   37 (341)
T ss_dssp             EEEE--SHHHHHHHHHHHHHH---EEEEES-SS
T ss_pred             EEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCC
Confidence            899999999999999999887447999997653

>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=95.70  E-value=0.11  Score=46.31  Aligned_cols=30  Identities=30%  Similarity=0.536  Sum_probs=28.0

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEe
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFR  101 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r  101 (183)
                      .|+|||||..|+-+|..+++.|. +|.++++
T Consensus         8 DvvVIG~G~AGl~AAi~aa~~g~-~V~l~~K   37 (562)
T COG1053           8 DVVVIGGGGAGLRAAIEAAEAGL-KVALLSK   37 (562)
T ss_pred             CEEEECCcHHHHHHHHHHHhcCC-cEEEEEc
Confidence            49999999999999999999996 6999996

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=95.67  E-value=0.015  Score=50.69  Aligned_cols=30  Identities=17%  Similarity=0.177  Sum_probs=27.8

Q ss_pred             EEEEcCChhHHHHHHHHHHc--CCceEEEEEee
Q psy16200         72 VIVLGAGDTAFDCATSALRC--GANKVLVVFRK  102 (183)
Q Consensus        72 VvViGgG~~g~e~A~~l~~~--G~~~V~lv~r~  102 (183)
                      |+|||||.+|+-+|..|+++  |. +|+++++.
T Consensus         3 VvIIGgGI~G~a~A~~L~~~~~g~-~V~VlEk~   34 (483)
T TIGR01320         3 VVLIGAGIMSATLGVLLRELEPNW-SITLIERL   34 (483)
T ss_pred             EEEECchHHHHHHHHHHHHhCCCC-eEEEEEcC
Confidence            89999999999999999997  76 79999984

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.64  E-value=0.04  Score=47.41  Aligned_cols=54  Identities=20%  Similarity=0.081  Sum_probs=40.3

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCCcCCCCHHHHHHHHHcCcEEEeCC
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFM  128 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~~~~~~~~~~~~~~~~gv~~~~~~  128 (183)
                      ||.|||.|.+|+.+|++|++.|. +|++++++..   +........+...|+.++.+.
T Consensus         2 ~v~viG~G~sG~s~a~~l~~~G~-~V~~~D~~~~---~~~~~~~~~l~~~gi~~~~g~   55 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLLKAQGW-EVVVSDRNDS---PELLERQQELEQEGITVKLGK   55 (459)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCC-EEEEECCCCc---hhhHHHHHHHHHcCCEEEECC
Confidence            58999999999999999999997 6999886532   222222344566788887654

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=95.61  E-value=0.018  Score=50.03  Aligned_cols=33  Identities=21%  Similarity=0.328  Sum_probs=29.8

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC  104 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~  104 (183)
                      +|+|||||..|+-+|..|++.|. +|+++++++.
T Consensus         1 ~v~IiG~G~aGl~aA~~L~~~G~-~v~v~E~~~~   33 (474)
T TIGR02732         1 KVAIVGAGLAGLSTAVELVDAGH-EVDIYESRSF   33 (474)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC-cEEEEEecCC
Confidence            48999999999999999999997 6999998654

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=95.54  E-value=0.023  Score=45.76  Aligned_cols=34  Identities=18%  Similarity=0.247  Sum_probs=30.9

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      .+|+|+|+|-+|.++|..|++.|..+++|+....
T Consensus        31 s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~   64 (268)
T PRK15116         31 AHICVVGIGGVGSWAAEALARTGIGAITLIDMDD   64 (268)
T ss_pred             CCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence            4599999999999999999999988999998653

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.51  E-value=0.069  Score=46.15  Aligned_cols=55  Identities=20%  Similarity=0.123  Sum_probs=39.7

Q ss_pred             cceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCCcCCCCHHHHHHHHHcCcEEEeC
Q psy16200         69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPF  127 (183)
Q Consensus        69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~~~~~~~~~~~~~~~~gv~~~~~  127 (183)
                      +++|.|+|.|-+|+-+|++|.+.|. +|++..++...   ........+.+.|+.+...
T Consensus        14 ~~~i~v~G~G~sG~a~a~~L~~~G~-~V~~~D~~~~~---~~~~~~~~l~~~gi~~~~~   68 (458)
T PRK01710         14 NKKVAVVGIGVSNIPLIKFLVKLGA-KVTAFDKKSEE---ELGEVSNELKELGVKLVLG   68 (458)
T ss_pred             CCeEEEEcccHHHHHHHHHHHHCCC-EEEEECCCCCc---cchHHHHHHHhCCCEEEeC
Confidence            4679999999999999999999997 69998765321   1122223456668777654

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.50  E-value=0.061  Score=46.17  Aligned_cols=33  Identities=21%  Similarity=0.269  Sum_probs=29.1

Q ss_pred             cceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      +++++|+|.|-+|+.+|++|+++|. +|++....
T Consensus         5 ~~~~~v~G~g~~G~~~a~~l~~~g~-~v~~~d~~   37 (445)
T PRK04308          5 NKKILVAGLGGTGISMIAYLRKNGA-EVAAYDAE   37 (445)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            4679999999999999999999997 69988754

>PLN02676 polyamine oxidase

Probab=95.49  E-value=0.018  Score=50.20  Aligned_cols=35  Identities=23%  Similarity=0.412  Sum_probs=30.5

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC  104 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~  104 (183)
                      .+|+|||||..|+-+|..|++.|.++|++++++.+
T Consensus        27 ~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~   61 (487)
T PLN02676         27 PSVIIVGAGMSGISAAKTLSEAGIEDILILEATDR   61 (487)
T ss_pred             CCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCC
Confidence            35999999999999999999999645999998653

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=95.43  E-value=0.025  Score=43.57  Aligned_cols=33  Identities=27%  Similarity=0.359  Sum_probs=30.5

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      .+|+|+|+|-+|.++|..|++.|..+++++.+.
T Consensus        22 ~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D   54 (200)
T TIGR02354        22 ATVAICGLGGLGSNVAINLARAGIGKLILVDFD   54 (200)
T ss_pred             CcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            569999999999999999999998789999875

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PTZ00367 squalene epoxidase; Provisional

Probab=95.40  E-value=0.021  Score=50.81  Aligned_cols=32  Identities=28%  Similarity=0.277  Sum_probs=29.8

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      +|+|||||..|+-+|..|++.|. +|++++|..
T Consensus        35 dViIVGaGiaGlalA~aLar~G~-~V~VlEr~~   66 (567)
T PTZ00367         35 DVIIVGGSIAGPVLAKALSKQGR-KVLMLERDL   66 (567)
T ss_pred             cEEEECCCHHHHHHHHHHHhcCC-EEEEEcccc
Confidence            59999999999999999999997 799999865

>KOG0685|consensus

Probab=95.40  E-value=0.027  Score=48.48  Aligned_cols=35  Identities=26%  Similarity=0.398  Sum_probs=31.3

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC  104 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~  104 (183)
                      .||+|||||..|+-+|..|.++|...|+|++-+++
T Consensus        22 ~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dR   56 (498)
T KOG0685|consen   22 AKIVIIGAGIAGLAAATRLLENGFIDVLILEASDR   56 (498)
T ss_pred             ceEEEECCchHHHHHHHHHHHhCCceEEEEEeccc
Confidence            36999999999999999999999889999987654

>TIGR03452 mycothione_red mycothione reductase

Probab=95.38  E-value=0.074  Score=45.87  Aligned_cols=29  Identities=14%  Similarity=0.212  Sum_probs=23.2

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      .|+|||+|.-|..+|.  ...|. +|.||+++
T Consensus         4 D~vvIG~G~~g~~aa~--~~~g~-~V~lie~~   32 (452)
T TIGR03452         4 DLIIIGTGSGNSIPDP--RFADK-RIAIVEKG   32 (452)
T ss_pred             CEEEECCCHHHHHHHH--HHCCC-eEEEEeCC
Confidence            3999999998988754  34685 79999974

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PLN02529 lysine-specific histone demethylase 1

Probab=95.38  E-value=0.027  Score=51.53  Aligned_cols=34  Identities=35%  Similarity=0.524  Sum_probs=30.4

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC  104 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~  104 (183)
                      ++|+|||||..|+.+|..|++.|. +|++++.+.+
T Consensus       161 ~~v~viGaG~aGl~aA~~l~~~g~-~v~v~E~~~~  194 (738)
T PLN02529        161 GSVIIVGAGLAGLAAARQLLSFGF-KVVVLEGRNR  194 (738)
T ss_pred             CCEEEECcCHHHHHHHHHHHHcCC-cEEEEecCcc
Confidence            459999999999999999999997 6999998653

>KOG2614|consensus

Probab=95.37  E-value=0.026  Score=47.78  Aligned_cols=33  Identities=24%  Similarity=0.375  Sum_probs=29.6

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      .+|+|+|||..|+-+|..|++.|- +|.+.+.+.
T Consensus         3 ~~VvIvGgGI~Gla~A~~l~r~G~-~v~VlE~~e   35 (420)
T KOG2614|consen    3 PKVVIVGGGIVGLATALALHRKGI-DVVVLESRE   35 (420)
T ss_pred             CcEEEECCcHHHHHHHHHHHHcCC-eEEEEeecc
Confidence            359999999999999999999998 699998753

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=95.37  E-value=0.045  Score=47.28  Aligned_cols=49  Identities=20%  Similarity=0.083  Sum_probs=36.6

Q ss_pred             ceEEEEcCChhHHH-HHHHHHHcCCceEEEEEeecCCcCCCCHHHHHHHHHcCcEEEe
Q psy16200         70 GTVIVLGAGDTAFD-CATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLP  126 (183)
Q Consensus        70 ~~VvViGgG~~g~e-~A~~l~~~G~~~V~lv~r~~~~~~~~~~~~~~~~~~~gv~~~~  126 (183)
                      ++|.|+|.|-+|+. +|++|.++|. +|+....+..   +    ....+.+.|+.+..
T Consensus         8 ~~v~viG~G~sG~s~~a~~L~~~G~-~V~~~D~~~~---~----~~~~l~~~gi~~~~   57 (461)
T PRK00421          8 KRIHFVGIGGIGMSGLAEVLLNLGY-KVSGSDLKES---A----VTQRLLELGAIIFI   57 (461)
T ss_pred             CEEEEEEEchhhHHHHHHHHHhCCC-eEEEECCCCC---h----HHHHHHHCCCEEeC
Confidence            57999999999999 7999999998 6998865421   1    22345566777754

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=95.36  E-value=0.029  Score=40.58  Aligned_cols=47  Identities=19%  Similarity=0.185  Sum_probs=37.3

Q ss_pred             EEEEcCChhHHHHHHHHHHcCCceEEEEEeecCCcCCCCHHHHHHHHHcCcEEEeCC
Q psy16200         72 VIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFM  128 (183)
Q Consensus        72 VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~~~~~~~~~~~~~~~~gv~~~~~~  128 (183)
                      |+|+|+|.+|.-+|..|++.|. +|+++.|+.+         .+...++|+.+....
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~-~V~l~~r~~~---------~~~~~~~g~~~~~~~   47 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGH-DVTLVSRSPR---------LEAIKEQGLTITGPD   47 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTC-EEEEEESHHH---------HHHHHHHCEEEEETT
T ss_pred             CEEECcCHHHHHHHHHHHHCCC-ceEEEEcccc---------HHhhhheeEEEEecc
Confidence            6899999999999999999886 7999987631         234567788776554

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>TIGR02730 carot_isom carotene isomerase

Probab=95.35  E-value=0.024  Score=49.30  Aligned_cols=32  Identities=41%  Similarity=0.363  Sum_probs=29.4

Q ss_pred             EEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200         72 VIVLGAGDTAFDCATSALRCGANKVLVVFRKGC  104 (183)
Q Consensus        72 VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~  104 (183)
                      |+|||+|..|+-+|.+|++.|. +|++++++..
T Consensus         3 vvViGaG~~Gl~aA~~La~~G~-~V~vlE~~~~   34 (493)
T TIGR02730         3 AIVIGSGIGGLVTATQLAVKGA-KVLVLERYLI   34 (493)
T ss_pred             EEEECCcHHHHHHHHHHHHCCC-cEEEEECCCC
Confidence            8999999999999999999997 6999998654

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=95.33  E-value=0.025  Score=48.78  Aligned_cols=33  Identities=15%  Similarity=0.292  Sum_probs=29.6

Q ss_pred             eEEEEcCChhHHHHHHHHHHcC--CceEEEEEeecC
Q psy16200         71 TVIVLGAGDTAFDCATSALRCG--ANKVLVVFRKGC  104 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G--~~~V~lv~r~~~  104 (183)
                      +++|||||.+|+-+|.+|++.+  + +|++++..++
T Consensus         2 ~i~IiG~GiaGLsaAy~L~k~~p~~-~i~lfE~~~r   36 (444)
T COG1232           2 KIAIIGGGIAGLSAAYRLQKAGPDV-EVTLFEADDR   36 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHhCCCC-cEEEEecCCC
Confidence            5999999999999999999998  7 5999998543

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=95.32  E-value=0.024  Score=49.60  Aligned_cols=33  Identities=18%  Similarity=0.315  Sum_probs=28.7

Q ss_pred             eEEEEcCChhHHHHHHHHHHc-CCceEEEEEeec
Q psy16200         71 TVIVLGAGDTAFDCATSALRC-GANKVLVVFRKG  103 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~-G~~~V~lv~r~~  103 (183)
                      .|+|||||.+|+-+|..|+++ +..+|+|+++..
T Consensus        47 DVvIIGGGI~G~a~A~~La~~~~~~~V~VlEk~~   80 (497)
T PTZ00383         47 DVVIVGGGVTGTALFYTLSKFTNLKKIALIERRS   80 (497)
T ss_pred             cEEEECccHHHHHHHHHHHhhCCCCEEEEEecCc
Confidence            599999999999999999996 434799999863

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=95.20  E-value=0.076  Score=45.80  Aligned_cols=54  Identities=26%  Similarity=0.170  Sum_probs=38.9

Q ss_pred             cceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCCcCCCCHHHHHHHHHcCcEEEeC
Q psy16200         69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPF  127 (183)
Q Consensus        69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~~~~~~~~~~~~~~~~gv~~~~~  127 (183)
                      .+||+|+|-|-+|+.+|++|.++|+ +|++...++.   +... ....+..+++++..+
T Consensus         7 ~~kv~V~GLG~sG~a~a~~L~~~G~-~v~v~D~~~~---~~~~-~~~~~~~~~i~~~~g   60 (448)
T COG0771           7 GKKVLVLGLGKSGLAAARFLLKLGA-EVTVSDDRPA---PEGL-AAQPLLLEGIEVELG   60 (448)
T ss_pred             CCEEEEEecccccHHHHHHHHHCCC-eEEEEcCCCC---ccch-hhhhhhccCceeecC
Confidence            5779999999999999999999997 6999976532   2111 112345566666544

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=95.19  E-value=0.034  Score=40.08  Aligned_cols=32  Identities=22%  Similarity=0.354  Sum_probs=29.5

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      +|+|+|.|-+|.++|..|++.|..+++++...
T Consensus         1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d   32 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFD   32 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCC
Confidence            58999999999999999999999889999764

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=95.19  E-value=0.035  Score=41.72  Aligned_cols=33  Identities=24%  Similarity=0.195  Sum_probs=30.2

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      ||+|+|+|-+|.++|..|++.|..+++++....
T Consensus         1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~   33 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV   33 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            589999999999999999999998899998753

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>KOG2844|consensus

Probab=95.19  E-value=0.12  Score=46.45  Aligned_cols=32  Identities=22%  Similarity=0.377  Sum_probs=26.9

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEe
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFR  101 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r  101 (183)
                      -+|+|||||..|+.+|-.|++.|.+-+.+.+|
T Consensus        40 A~vvViggG~~g~~~~yhlak~g~k~avlle~   71 (856)
T KOG2844|consen   40 ADVVVIGGGSLGCSTAYHLAKRGMKGAVLLER   71 (856)
T ss_pred             ccEEEEcCCchhHHHHHHHHHccccceEEEee
Confidence            46999999999999999999999754555555

>PLN02612 phytoene desaturase

Probab=95.13  E-value=0.037  Score=49.19  Aligned_cols=36  Identities=19%  Similarity=0.246  Sum_probs=31.3

Q ss_pred             CcceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200         68 LKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC  104 (183)
Q Consensus        68 ~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~  104 (183)
                      .+.+|+|||||..|+-+|..|++.|. +|++++++.+
T Consensus        92 ~~~~v~iiG~G~~Gl~~a~~l~~~g~-~~~~~e~~~~  127 (567)
T PLN02612         92 KPLKVVIAGAGLAGLSTAKYLADAGH-KPILLEARDV  127 (567)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhcCC-eEEEEecCCC
Confidence            34569999999999999999999996 6999998643

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=95.10  E-value=0.17  Score=45.09  Aligned_cols=58  Identities=14%  Similarity=0.194  Sum_probs=40.6

Q ss_pred             HHHHHHcCcEEEeCCcceEEEcc--C--CcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEccccccc
Q psy16200        114 VQLAWEEKCEFLPFMSPVQVDVK--D--NKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLL  180 (183)
Q Consensus       114 ~~~~~~~gv~~~~~~~~~~i~~~--~--~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~  180 (183)
                      ..+++++||+|++++.++++..+  +  ++|++|++.+     +|    ...+....+.|.||+++|..-.
T Consensus       233 ~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~-----~~----~~~~I~l~~~DlVivTnGs~t~  294 (576)
T PRK13977        233 IKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTR-----NG----KEETIDLTEDDLVFVTNGSITE  294 (576)
T ss_pred             HHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEe-----CC----ceeEEEecCCCEEEEeCCcCcc
Confidence            45678999999999999998753  3  4688888742     00    1112233478999999997654

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=95.08  E-value=0.029  Score=49.03  Aligned_cols=32  Identities=16%  Similarity=0.129  Sum_probs=28.2

Q ss_pred             eEEEEcCChhHHHHHHHHHHc--CCceEEEEEeec
Q psy16200         71 TVIVLGAGDTAFDCATSALRC--GANKVLVVFRKG  103 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~--G~~~V~lv~r~~  103 (183)
                      .|+|||||.+|+-+|..|+++  |. +|+|++|..
T Consensus         7 DVvIIGgGIiG~slA~~L~~~~~g~-~V~VlEk~~   40 (494)
T PRK05257          7 DVVLIGGGIMSATLGTLLKELEPEW-SITMFERLD   40 (494)
T ss_pred             eEEEECcHHHHHHHHHHHHHhCCCC-eEEEEEcCC
Confidence            499999999999999999985  54 799999853

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=95.06  E-value=0.04  Score=50.83  Aligned_cols=34  Identities=32%  Similarity=0.424  Sum_probs=30.5

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC  104 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~  104 (183)
                      .+|+|||||..|+.+|..|++.|. +|++++.+.+
T Consensus       239 ~~v~IiGaG~aGl~aA~~L~~~g~-~v~v~E~~~r  272 (808)
T PLN02328        239 ANVVVVGAGLAGLVAARQLLSMGF-KVVVLEGRAR  272 (808)
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCC-cEEEEecccc
Confidence            459999999999999999999997 6999998653

>PRK09897 hypothetical protein; Provisional

Probab=95.04  E-value=0.095  Score=46.32  Aligned_cols=23  Identities=17%  Similarity=0.186  Sum_probs=20.3

Q ss_pred             cceEEEEcCChhHHHHHHHHHHc
Q psy16200         69 KGTVIVLGAGDTAFDCATSALRC   91 (183)
Q Consensus        69 ~~~VvViGgG~~g~e~A~~l~~~   91 (183)
                      +.+|+|+|.|.+++|.+..|...
T Consensus       191 ~~~V~I~GtGLt~iD~v~~Lt~~  213 (534)
T PRK09897        191 ACNVGIMGTSLSGLDAAMAVAIQ  213 (534)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhc
Confidence            46699999999999999998765

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=95.01  E-value=0.047  Score=40.64  Aligned_cols=34  Identities=32%  Similarity=0.335  Sum_probs=27.8

Q ss_pred             CcceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         68 LKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        68 ~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      .+.+|+|+|+|.+|..++..|..+|+ +|+.+..+
T Consensus        19 ~p~~vvv~G~G~vg~gA~~~~~~lGa-~v~~~d~~   52 (168)
T PF01262_consen   19 PPAKVVVTGAGRVGQGAAEIAKGLGA-EVVVPDER   52 (168)
T ss_dssp             -T-EEEEESTSHHHHHHHHHHHHTT--EEEEEESS
T ss_pred             CCeEEEEECCCHHHHHHHHHHhHCCC-EEEeccCC
Confidence            34679999999999999999999998 58888753

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=95.01  E-value=0.023  Score=47.96  Aligned_cols=30  Identities=20%  Similarity=0.283  Sum_probs=27.3

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEe
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFR  101 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r  101 (183)
                      ||.|+|.|++|+-.|..|+++|. +|+.+..
T Consensus         2 kI~viGtGYVGLv~g~~lA~~GH-eVv~vDi   31 (414)
T COG1004           2 KITVIGTGYVGLVTGACLAELGH-EVVCVDI   31 (414)
T ss_pred             ceEEECCchHHHHHHHHHHHcCC-eEEEEeC
Confidence            58999999999999999999996 6988864

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=95.00  E-value=0.047  Score=40.92  Aligned_cols=34  Identities=26%  Similarity=0.242  Sum_probs=29.0

Q ss_pred             CcceEEEEcCChh-HHHHHHHHHHcCCceEEEEEee
Q psy16200         68 LKGTVIVLGAGDT-AFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        68 ~~~~VvViGgG~~-g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      .+++|+|||+|.+ |.-+|..|.+.|+ +|+++.|.
T Consensus        43 ~gk~vlViG~G~~~G~~~a~~L~~~g~-~V~v~~r~   77 (168)
T cd01080          43 AGKKVVVVGRSNIVGKPLAALLLNRNA-TVTVCHSK   77 (168)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhhCCC-EEEEEECC
Confidence            3456999999975 8889999999998 69999875

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PLN02487 zeta-carotene desaturase

Probab=94.94  E-value=0.04  Score=49.02  Aligned_cols=33  Identities=24%  Similarity=0.307  Sum_probs=30.2

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC  104 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~  104 (183)
                      +|+|||||..|+-+|..|.+.|. +|+++++++.
T Consensus        77 ~v~iiG~G~~Gl~~a~~L~~~g~-~v~i~E~~~~  109 (569)
T PLN02487         77 KVAIIGAGLAGMSTAVELLDQGH-EVDIYESRPF  109 (569)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCC-eeEEEecCCC
Confidence            79999999999999999999996 6999998654

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=94.89  E-value=0.24  Score=41.22  Aligned_cols=92  Identities=13%  Similarity=0.213  Sum_probs=57.0

Q ss_pred             EEEEcCChhHHHHHHHHHHcC-CceEEEEEeecCCcCC--CCHHH----------HHH---H-HHcCcEEEeCCcceEEE
Q psy16200         72 VIVLGAGDTAFDCATSALRCG-ANKVLVVFRKGCTNIR--AVPEE----------VQL---A-WEEKCEFLPFMSPVQVD  134 (183)
Q Consensus        72 VvViGgG~~g~e~A~~l~~~G-~~~V~lv~r~~~~~~~--~~~~~----------~~~---~-~~~gv~~~~~~~~~~i~  134 (183)
                      ++|+|+|..|+.+|..+.+.. ..+++++.+.......  .....          +..   . .+.++.++.++.+.++.
T Consensus         1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id   80 (415)
T COG0446           1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYYRCPLSLYVGGGIASLEDLRYPPRFNRATGIDVRTGTEVTSID   80 (415)
T ss_pred             CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCCCCccchHHhcccCCHHHhcccchhHHhhCCEEeeCCEEEEec
Confidence            589999999999999887753 2368877765432110  00000          000   1 24467777777776665


Q ss_pred             ccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccccccCC
Q psy16200        135 VKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDN  182 (183)
Q Consensus       135 ~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~  182 (183)
                      .+...+.   +             .++   .+..|.+++|+|..|...
T Consensus        81 ~~~~~v~---~-------------~~g---~~~yd~LvlatGa~~~~~  109 (415)
T COG0446          81 PENKVVL---L-------------DDG---EIEYDYLVLATGARPRPP  109 (415)
T ss_pred             CCCCEEE---E-------------CCC---cccccEEEEcCCCcccCC
Confidence            4333221   1             223   788999999999999875

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=94.88  E-value=0.045  Score=42.14  Aligned_cols=33  Identities=21%  Similarity=0.352  Sum_probs=30.6

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      .+|+|+|.|-+|.++|..|++.|..+++++.+.
T Consensus        22 ~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d   54 (202)
T TIGR02356        22 SHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD   54 (202)
T ss_pred             CCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence            569999999999999999999998889999875

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=94.83  E-value=0.04  Score=47.38  Aligned_cols=31  Identities=35%  Similarity=0.548  Sum_probs=28.5

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      .|+|||||..|+.+|..|++.|. +|.+|+++
T Consensus         5 DvvIIG~G~aGl~aA~~l~~~g~-~v~lie~~   35 (460)
T PRK06292          5 DVIVIGAGPAGYVAARRAAKLGK-KVALIEKG   35 (460)
T ss_pred             cEEEECCCHHHHHHHHHHHHCCC-eEEEEeCC
Confidence            39999999999999999999996 79999973

>PLN02568 polyamine oxidase

Probab=94.82  E-value=0.044  Score=48.47  Aligned_cols=35  Identities=20%  Similarity=0.271  Sum_probs=29.6

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCC----ceEEEEEeecC
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGA----NKVLVVFRKGC  104 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~----~~V~lv~r~~~  104 (183)
                      .+|+|||+|..|+-+|..|++.|.    .+|+|++++.+
T Consensus         6 ~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~   44 (539)
T PLN02568          6 PRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDR   44 (539)
T ss_pred             CcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCC
Confidence            469999999999999999998871    36999997553

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=94.80  E-value=0.056  Score=41.50  Aligned_cols=33  Identities=21%  Similarity=0.445  Sum_probs=30.6

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      .+|+|+|.|-+|.++|..|++.|.++++++...
T Consensus        20 s~VlviG~gglGsevak~L~~~GVg~i~lvD~d   52 (198)
T cd01485          20 AKVLIIGAGALGAEIAKNLVLAGIDSITIVDHR   52 (198)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence            469999999999999999999999999999864

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.80  E-value=0.099  Score=42.50  Aligned_cols=35  Identities=14%  Similarity=0.213  Sum_probs=30.7

Q ss_pred             CcceEEEEcCCh-hHHHHHHHHHHcCCceEEEEEeec
Q psy16200         68 LKGTVIVLGAGD-TAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        68 ~~~~VvViGgG~-~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      .+++|+|||.|. +|.-+|..|.+.|+ .|+++++++
T Consensus       157 ~Gk~vvVIGrs~~VG~pla~lL~~~ga-tVtv~~s~t  192 (286)
T PRK14175        157 EGKNAVVIGRSHIVGQPVSKLLLQKNA-SVTILHSRS  192 (286)
T ss_pred             CCCEEEEECCCchhHHHHHHHHHHCCC-eEEEEeCCc
Confidence            345699999988 99999999999998 799999864

>PRK10637 cysG siroheme synthase; Provisional

Probab=94.76  E-value=0.084  Score=45.72  Aligned_cols=31  Identities=29%  Similarity=0.366  Sum_probs=27.7

Q ss_pred             cceEEEEcCChhHHHHHHHHHHcCCceEEEEE
Q psy16200         69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVF  100 (183)
Q Consensus        69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~  100 (183)
                      +++|+|||||.+|.-=+..|.+.|+ +|+++.
T Consensus        12 ~~~vlvvGgG~vA~rk~~~ll~~ga-~v~vis   42 (457)
T PRK10637         12 DRDCLLVGGGDVAERKARLLLDAGA-RLTVNA   42 (457)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC-EEEEEc
Confidence            3569999999999999999999998 699984

>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional

Probab=94.75  E-value=0.039  Score=48.39  Aligned_cols=31  Identities=32%  Similarity=0.361  Sum_probs=28.0

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      .|+|||+| .|+-+|..+++.|+ +|.|+++.+
T Consensus         9 DVvVVG~G-aGl~aA~~aa~~G~-~V~vlEk~~   39 (513)
T PRK12837          9 DVLVAGSG-GGVAGAYTAAREGL-SVALVEATD   39 (513)
T ss_pred             CEEEECch-HHHHHHHHHHHCCC-cEEEEecCC
Confidence            49999999 99999999999998 699999743

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=94.73  E-value=0.058  Score=41.38  Aligned_cols=34  Identities=9%  Similarity=0.238  Sum_probs=31.0

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      .+|+|+|.|.+|+++|..|+..|..+++++....
T Consensus        22 s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~   55 (197)
T cd01492          22 ARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRT   55 (197)
T ss_pred             CcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence            4699999999999999999999999999998653

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.69  E-value=0.048  Score=44.27  Aligned_cols=34  Identities=32%  Similarity=0.316  Sum_probs=30.3

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC  104 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~  104 (183)
                      ++|.|||+|.+|..+|..++..|. +|+++.+.+.
T Consensus         6 ~~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~   39 (286)
T PRK07819          6 QRVGVVGAGQMGAGIAEVCARAGV-DVLVFETTEE   39 (286)
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCC-EEEEEECCHH
Confidence            479999999999999999999997 7999987643

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=94.69  E-value=0.039  Score=44.41  Aligned_cols=33  Identities=27%  Similarity=0.308  Sum_probs=27.5

Q ss_pred             EEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200         72 VIVLGAGDTAFDCATSALRCGANKVLVVFRKGC  104 (183)
Q Consensus        72 VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~  104 (183)
                      ++|||+|..|+-+|..|++.|..+|.|+++.+.
T Consensus         3 ~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~   35 (296)
T PF00732_consen    3 YIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPR   35 (296)
T ss_dssp             EEEES-SHHHHHHHHHHTTSTTS-EEEEESSBS
T ss_pred             EEEECcCHHHHHHHHHHhhCCCCcEEEEEcccc
Confidence            899999999999999999987557999998654

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.69  E-value=0.054  Score=43.83  Aligned_cols=33  Identities=24%  Similarity=0.111  Sum_probs=29.5

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      ++|.|||+|.+|..+|..+++.|. +|+++.++.
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~G~-~V~l~d~~~   36 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFHGF-DVTIYDISD   36 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCH
Confidence            469999999999999999999997 699998754

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.68  E-value=0.13  Score=44.84  Aligned_cols=33  Identities=30%  Similarity=0.273  Sum_probs=28.9

Q ss_pred             CcceEEEEcCChhHHHHHHHHHHcCCceEEEEEe
Q psy16200         68 LKGTVIVLGAGDTAFDCATSALRCGANKVLVVFR  101 (183)
Q Consensus        68 ~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r  101 (183)
                      .+++|+|+|.|-+|+-++++|..+|+ +|++..+
T Consensus        11 ~~~~v~V~G~G~sG~aa~~~L~~~G~-~v~~~D~   43 (488)
T PRK03369         11 PGAPVLVAGAGVTGRAVLAALTRFGA-RPTVCDD   43 (488)
T ss_pred             CCCeEEEEcCCHHHHHHHHHHHHCCC-EEEEEcC
Confidence            34679999999999999999999997 6998764

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=94.68  E-value=0.082  Score=34.78  Aligned_cols=34  Identities=35%  Similarity=0.389  Sum_probs=28.8

Q ss_pred             CcceEEEEcCChhHHHHHHHHHHcCCceEEEEEe
Q psy16200         68 LKGTVIVLGAGDTAFDCATSALRCGANKVLVVFR  101 (183)
Q Consensus        68 ~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r  101 (183)
                      .+++++|+|.|.+|.-++..+.+.+.++|+++.|
T Consensus        22 ~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r   55 (86)
T cd05191          22 KGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR   55 (86)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            3467999999999999999999985557888866

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.66  E-value=0.051  Score=44.93  Aligned_cols=33  Identities=21%  Similarity=0.178  Sum_probs=29.9

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      ++|.|||+|.+|..+|..++..|. +|++..+++
T Consensus         8 ~~VaVIGaG~MG~giA~~~a~aG~-~V~l~D~~~   40 (321)
T PRK07066          8 KTFAAIGSGVIGSGWVARALAHGL-DVVAWDPAP   40 (321)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCH
Confidence            679999999999999999999997 799998754

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=94.66  E-value=0.057  Score=42.29  Aligned_cols=33  Identities=27%  Similarity=0.306  Sum_probs=30.4

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      .+|+|+|.|-+|.++|..|++.|..+++++...
T Consensus        22 ~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D   54 (228)
T cd00757          22 ARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDD   54 (228)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            569999999999999999999999999999763

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.64  E-value=0.15  Score=44.28  Aligned_cols=33  Identities=9%  Similarity=-0.077  Sum_probs=29.1

Q ss_pred             cceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      +++|+|+|.|-+|..+|++|.++|+ +|++...+
T Consensus         8 ~~~v~v~G~G~sG~~~~~~l~~~g~-~v~~~d~~   40 (468)
T PRK04690          8 GRRVALWGWGREGRAAYRALRAHLP-AQALTLFC   40 (468)
T ss_pred             CCEEEEEccchhhHHHHHHHHHcCC-EEEEEcCC
Confidence            4679999999999999999999998 69887643

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=94.61  E-value=0.054  Score=45.08  Aligned_cols=34  Identities=26%  Similarity=0.382  Sum_probs=31.0

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      .+|+|||+|-.|..+|..|++.|..+++|+.+..
T Consensus        25 ~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~   58 (338)
T PRK12475         25 KHVLIVGAGALGAANAEALVRAGIGKLTIADRDY   58 (338)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence            5699999999999999999999988899998753

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=94.58  E-value=0.21  Score=42.48  Aligned_cols=83  Identities=8%  Similarity=0.123  Sum_probs=49.0

Q ss_pred             HHHHHHHcC--CceEEEEEeecCC-cCCC----------C-HHH-H----HHH-HHcCcEEEeCCcceEEEccCCcEEEE
Q psy16200         84 CATSALRCG--ANKVLVVFRKGCT-NIRA----------V-PEE-V----QLA-WEEKCEFLPFMSPVQVDVKDNKIAGM  143 (183)
Q Consensus        84 ~A~~l~~~G--~~~V~lv~r~~~~-~~~~----------~-~~~-~----~~~-~~~gv~~~~~~~~~~i~~~~~~v~~v  143 (183)
                      +|..|.+++  . +|+|+++++.. ..|.          . ..+ +    ..+ .+.|++++.+..+.++..++..+.  
T Consensus         2 aA~~l~~~~~~~-~Vtlid~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~~id~~~~~v~--   78 (427)
T TIGR03385         2 AASRVRRLDKES-DIIVFEKTEDVSFANCGLPYVIGGVIDDRNKLLAYTPEVFIKKRGIDVKTNHEVIEVNDERQTVV--   78 (427)
T ss_pred             HHHHHHhhCCCC-cEEEEEcCCceeEEcCCCCeEeccccCCHHHcccCCHHHHHHhcCCeEEecCEEEEEECCCCEEE--
Confidence            456666653  3 59999987642 1111          0 111 1    223 567899988888888764444332  


Q ss_pred             EEEEeeecCCCCeecCCCceEEEE--CCEEEEcccccccCC
Q psy16200        144 QFNRTEQNEKGEWVEDEEQRIKLK--ANYIISAFGSTLLDN  182 (183)
Q Consensus       144 ~~~~~~~~~~~~~~~~~g~~~~i~--~D~Vi~a~G~~p~~~  182 (183)
                       +..            .++...+.  +|.||+|+|.+|+..
T Consensus        79 -~~~------------~~~~~~~~~~yd~lIiATG~~p~~~  106 (427)
T TIGR03385        79 -VRN------------NKTNETYEESYDYLILSPGASPIVP  106 (427)
T ss_pred             -EEE------------CCCCCEEecCCCEEEECCCCCCCCC
Confidence             321            11122455  999999999998753

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=94.56  E-value=0.28  Score=44.63  Aligned_cols=95  Identities=16%  Similarity=0.171  Sum_probs=63.0

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcC--CceEEEEEeecCCc---------CC--CCHHHH-----HHHHHcCcEEEeCCcce
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCG--ANKVLVVFRKGCTN---------IR--AVPEEV-----QLAWEEKCEFLPFMSPV  131 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G--~~~V~lv~r~~~~~---------~~--~~~~~~-----~~~~~~gv~~~~~~~~~  131 (183)
                      .+++|||.|..|.-+...+.+..  .-.+|++...++..         ++  ..-+++     ++..++||.++++..++
T Consensus         4 ~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi~l~~~dwy~~~~i~L~~~~~v~   83 (793)
T COG1251           4 QKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDISLNRNDWYEENGITLYTGEKVI   83 (793)
T ss_pred             eeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceeeccccCCCccHHHHhccchhhHHHcCcEEEcCCeeE
Confidence            46999999999999888777632  23688887544311         00  111121     24578899999999998


Q ss_pred             EEEccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccccccCC
Q psy16200        132 QVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDN  182 (183)
Q Consensus       132 ~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~  182 (183)
                      ++.. +.+.  | +              +....++..|-+|+|+|..|.-.
T Consensus        84 ~idr-~~k~--V-~--------------t~~g~~~~YDkLilATGS~pfi~  116 (793)
T COG1251          84 QIDR-ANKV--V-T--------------TDAGRTVSYDKLIIATGSYPFIL  116 (793)
T ss_pred             Eecc-Ccce--E-E--------------ccCCcEeecceeEEecCcccccc
Confidence            8864 2332  1 1              12234788999999999999754

>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like

Probab=94.55  E-value=0.061  Score=42.47  Aligned_cols=33  Identities=18%  Similarity=0.277  Sum_probs=30.3

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      ||+|||+|-+|++++..|+..|..+++++....
T Consensus         1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~   33 (234)
T cd01484           1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDT   33 (234)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            589999999999999999999999999998743

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=94.54  E-value=0.05  Score=47.65  Aligned_cols=30  Identities=23%  Similarity=0.201  Sum_probs=27.9

Q ss_pred             eEEEEcCChhHHHHHHHHHHc--CCceEEEEEe
Q psy16200         71 TVIVLGAGDTAFDCATSALRC--GANKVLVVFR  101 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~--G~~~V~lv~r  101 (183)
                      .|+|||||.+|+.+|..|++.  +. +|+|++|
T Consensus         8 DvvIIGgGI~G~sla~~L~~~~~~~-~V~vlEr   39 (497)
T PRK13339          8 DVVLVGAGILSTTFGVLLKELDPDW-NIEVVER   39 (497)
T ss_pred             CEEEECchHHHHHHHHHHHhCCCCC-eEEEEEc
Confidence            499999999999999999998  65 7999999

>KOG4716|consensus

Probab=94.53  E-value=0.086  Score=43.96  Aligned_cols=29  Identities=38%  Similarity=0.605  Sum_probs=26.3

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEE
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVF  100 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~  100 (183)
                      ..+|||||--|+.||..++.+|+ +|.++.
T Consensus        21 DLIviGgGSgGLacaKeAa~~G~-kV~~lD   49 (503)
T KOG4716|consen   21 DLIVIGGGSGGLACAKEAADLGA-KVACLD   49 (503)
T ss_pred             cEEEEcCCcchhhHHHHHHhcCC-cEEEEe
Confidence            48999999999999999999997 588875

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=94.53  E-value=0.067  Score=42.38  Aligned_cols=34  Identities=12%  Similarity=0.221  Sum_probs=31.0

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      .+|+|+|+|-+|..+|..|++.|..+++++....
T Consensus        25 ~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~   58 (240)
T TIGR02355        25 SRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDT   58 (240)
T ss_pred             CcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCc
Confidence            5699999999999999999999999999998743

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>KOG2820|consensus

Probab=94.53  E-value=0.62  Score=38.86  Aligned_cols=30  Identities=30%  Similarity=0.458  Sum_probs=27.4

Q ss_pred             EEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         72 VIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        72 VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      |+|||+|-.|+-.|..|+++| .++.++++.
T Consensus        10 viiVGAGVfG~stAyeLaK~g-~killLeqf   39 (399)
T KOG2820|consen   10 VIIVGAGVFGLSTAYELAKRG-DKILLLEQF   39 (399)
T ss_pred             EEEEcccccchHHHHHHHhcC-CeEEEEecc
Confidence            999999999999999999999 579999873

>PLN03000 amine oxidase

Probab=94.52  E-value=0.054  Score=50.30  Aligned_cols=34  Identities=29%  Similarity=0.455  Sum_probs=30.5

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC  104 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~  104 (183)
                      .+|+|||+|..|+.+|..|.+.|. +|++++.+.+
T Consensus       185 ~~VvIIGaG~aGL~aA~~L~~~G~-~V~VlE~~~r  218 (881)
T PLN03000        185 SSVVIVGAGLSGLAAARQLMRFGF-KVTVLEGRKR  218 (881)
T ss_pred             CCEEEECccHHHHHHHHHHHHCCC-cEEEEEccCc
Confidence            469999999999999999999997 6999998654

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=94.50  E-value=0.07  Score=41.44  Aligned_cols=33  Identities=24%  Similarity=0.265  Sum_probs=30.6

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      .+|+|||+|-+|.++|..|++.|..+++++...
T Consensus        29 ~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D   61 (212)
T PRK08644         29 AKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD   61 (212)
T ss_pred             CCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            469999999999999999999999889999875

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=94.45  E-value=0.067  Score=44.57  Aligned_cols=33  Identities=33%  Similarity=0.478  Sum_probs=30.7

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      .+|+|||+|.+|..+|..|++.|..+++++...
T Consensus        25 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D   57 (339)
T PRK07688         25 KHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD   57 (339)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            569999999999999999999999889999874

>PRK08328 hypothetical protein; Provisional

Probab=94.44  E-value=0.07  Score=41.98  Aligned_cols=33  Identities=21%  Similarity=0.333  Sum_probs=30.3

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      .+|+|+|+|-+|.++|..|++.|..+++++...
T Consensus        28 ~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D   60 (231)
T PRK08328         28 AKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQ   60 (231)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            469999999999999999999999999999754

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=94.42  E-value=0.067  Score=43.43  Aligned_cols=34  Identities=24%  Similarity=0.319  Sum_probs=30.6

Q ss_pred             cceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      +++|+|+|+|-.|.-++..|+..|+++|+++.|.
T Consensus       127 ~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~  160 (284)
T PRK12549        127 LERVVQLGAGGAGAAVAHALLTLGVERLTIFDVD  160 (284)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCC
Confidence            3579999999999999999999998889999774

>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2

Probab=94.40  E-value=0.056  Score=44.51  Aligned_cols=33  Identities=18%  Similarity=0.317  Sum_probs=30.4

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      ||+|||+|-+|+|+|..|+..|..+++++....
T Consensus         1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~   33 (312)
T cd01489           1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDT   33 (312)
T ss_pred             CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCCC
Confidence            589999999999999999999999999998743

UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>KOG2013|consensus

Probab=94.38  E-value=0.058  Score=46.55  Aligned_cols=37  Identities=16%  Similarity=0.286  Sum_probs=33.0

Q ss_pred             CcceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200         68 LKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC  104 (183)
Q Consensus        68 ~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~  104 (183)
                      .++||+|||+|-+|||+-..|+..|-++||+|...+-
T Consensus        11 ~~~riLvVGaGGIGCELLKnLal~gf~~IhiIDlDTI   47 (603)
T KOG2013|consen   11 KSGRILVVGAGGIGCELLKNLALTGFEEIHIIDLDTI   47 (603)
T ss_pred             ccCeEEEEecCcccHHHHHHHHHhcCCeeEEEeccce
Confidence            3578999999999999999999999999999987543

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=94.37  E-value=0.047  Score=47.10  Aligned_cols=32  Identities=31%  Similarity=0.202  Sum_probs=29.5

Q ss_pred             EEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200         72 VIVLGAGDTAFDCATSALRCGANKVLVVFRKGC  104 (183)
Q Consensus        72 VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~  104 (183)
                      |+|||+|..++-+|..|++.|. +|.+++|++.
T Consensus         7 ViViGtGL~e~ilAa~Ls~~Gk-kVLhlD~n~~   38 (443)
T PTZ00363          7 VIVCGTGLKECILSGLLSVNGK-KVLHMDRNPY   38 (443)
T ss_pred             EEEECCChHHHHHHhhhhhCCC-EEEEecCCCC
Confidence            9999999999999999999995 7999998754

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=94.32  E-value=0.059  Score=47.94  Aligned_cols=32  Identities=28%  Similarity=0.503  Sum_probs=29.2

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      +|+|||+|..|+.+|..+++.|+ +|.++++.+
T Consensus        11 DVvVVG~G~aGl~AA~~aa~~G~-~v~llEk~~   42 (574)
T PRK12842         11 DVLVIGSGAGGLSAAITARKLGL-DVVVLEKEP   42 (574)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCC-eEEEEecCC
Confidence            49999999999999999999998 699999754

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.30  E-value=0.069  Score=43.19  Aligned_cols=33  Identities=24%  Similarity=0.173  Sum_probs=29.3

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      ++|.|||+|.+|..+|..|++.|. +|+++.++.
T Consensus         2 ~~V~VIG~G~mG~~iA~~la~~G~-~V~~~d~~~   34 (288)
T PRK09260          2 EKLVVVGAGVMGRGIAYVFAVSGF-QTTLVDIKQ   34 (288)
T ss_pred             cEEEEECccHHHHHHHHHHHhCCC-cEEEEeCCH
Confidence            469999999999999999999997 699998754

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=94.29  E-value=0.067  Score=43.34  Aligned_cols=33  Identities=24%  Similarity=0.192  Sum_probs=29.6

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      ++|.|||+|.+|..+|..++..|. +|+++.+++
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~   36 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFARTGY-DVTIVDVSE   36 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhcCC-eEEEEeCCH
Confidence            569999999999999999999997 699998754

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=94.29  E-value=0.071  Score=43.61  Aligned_cols=31  Identities=32%  Similarity=0.377  Sum_probs=28.9

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      ||+|+|+|.+|.=+|.+|++.|. +|+++.|+
T Consensus         4 ~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~   34 (305)
T PRK05708          4 TWHILGAGSLGSLWACRLARAGL-PVRLILRD   34 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCC-CeEEEEec
Confidence            59999999999999999999997 69999885

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=94.28  E-value=0.2  Score=34.41  Aligned_cols=47  Identities=28%  Similarity=0.299  Sum_probs=34.9

Q ss_pred             EEEEcCChhHHHHHHHHHHcCCceEEEEEeecCCcCCCCHHHHHHHHHcCcEEEeC
Q psy16200         72 VIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPF  127 (183)
Q Consensus        72 VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~~~~~~~~~~~~~~~~gv~~~~~  127 (183)
                      |+|+|.|..|..++..|.+.+ .+|+++++.+        +....+.++|+.++.+
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~-~~vvvid~d~--------~~~~~~~~~~~~~i~g   47 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGG-IDVVVIDRDP--------ERVEELREEGVEVIYG   47 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTT-SEEEEEESSH--------HHHHHHHHTTSEEEES
T ss_pred             eEEEcCCHHHHHHHHHHHhCC-CEEEEEECCc--------HHHHHHHhcccccccc
Confidence            689999999999999999965 4799997643        2345566777766554

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=94.26  E-value=0.73  Score=39.57  Aligned_cols=51  Identities=18%  Similarity=0.204  Sum_probs=37.8

Q ss_pred             HHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEccccc
Q psy16200        115 QLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGST  178 (183)
Q Consensus       115 ~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~  178 (183)
                      +.+++.|+.|+.+..+.++..++++++++...             .+.+..+.+|.+|+|+|.-
T Consensus       271 ~~~~~~Gg~il~g~~V~~i~~~~~~v~~V~t~-------------~g~~~~l~AD~vVLAaGaw  321 (419)
T TIGR03378       271 HRFEQLGGVMLPGDRVLRAEFEGNRVTRIHTR-------------NHRDIPLRADHFVLASGSF  321 (419)
T ss_pred             HHHHHCCCEEEECcEEEEEEeeCCeEEEEEec-------------CCccceEECCEEEEccCCC
Confidence            34577899999999998887666777755431             2224579999999999964

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=94.24  E-value=0.067  Score=49.27  Aligned_cols=33  Identities=21%  Similarity=0.215  Sum_probs=29.5

Q ss_pred             eEEEEcCChhHHHHHHHHHHc--CCceEEEEEeecC
Q psy16200         71 TVIVLGAGDTAFDCATSALRC--GANKVLVVFRKGC  104 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~--G~~~V~lv~r~~~  104 (183)
                      +|+|||||..|+-+|..|++.  |. +|+|+++.+.
T Consensus         2 ~V~IIGaGpAGLaaAi~L~~~~~G~-~V~vlEr~~~   36 (765)
T PRK08255          2 RIVCIGGGPAGLYFALLMKLLDPAH-EVTVVERNRP   36 (765)
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCCC-eEEEEecCCC
Confidence            599999999999999999998  66 7999998753

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=94.23  E-value=0.077  Score=39.49  Aligned_cols=36  Identities=25%  Similarity=0.250  Sum_probs=27.4

Q ss_pred             CCcceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         67 ILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        67 ~~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      ..+++++|+|=|.+|--+|..|..+|+ +|++.+..+
T Consensus        21 l~Gk~vvV~GYG~vG~g~A~~lr~~Ga-~V~V~e~DP   56 (162)
T PF00670_consen   21 LAGKRVVVIGYGKVGKGIARALRGLGA-RVTVTEIDP   56 (162)
T ss_dssp             -TTSEEEEE--SHHHHHHHHHHHHTT--EEEEE-SSH
T ss_pred             eCCCEEEEeCCCcccHHHHHHHhhCCC-EEEEEECCh
Confidence            345669999999999999999999998 699998754

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=94.22  E-value=0.084  Score=42.78  Aligned_cols=34  Identities=24%  Similarity=0.287  Sum_probs=30.6

Q ss_pred             cceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      +++|+|||+|-+|--++..|++.|+++|+++.|.
T Consensus       125 ~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt  158 (282)
T TIGR01809       125 GFRGLVIGAGGTSRAAVYALASLGVTDITVINRN  158 (282)
T ss_pred             CceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            4569999999999999999999998889999875

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>KOG0405|consensus

Probab=94.18  E-value=0.53  Score=39.52  Aligned_cols=30  Identities=30%  Similarity=0.364  Sum_probs=27.5

Q ss_pred             EEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         72 VIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        72 VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      .+|||||--|+-.|++++.+|+ +|.+++-.
T Consensus        23 ylvIGgGSGGvasARrAa~~GA-kv~l~E~~   52 (478)
T KOG0405|consen   23 YLVIGGGSGGVASARRAASHGA-KVALCELP   52 (478)
T ss_pred             eEEEcCCcchhHHhHHHHhcCc-eEEEEecC
Confidence            7999999999999999999998 69999854

>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3

Probab=94.18  E-value=0.071  Score=43.47  Aligned_cols=33  Identities=18%  Similarity=0.295  Sum_probs=30.2

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      ||+|||+|-+|++++..|+..|..+++++....
T Consensus         1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D~   33 (291)
T cd01488           1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMDT   33 (291)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCE
Confidence            589999999999999999999999999998643

UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.14  E-value=0.073  Score=45.94  Aligned_cols=38  Identities=24%  Similarity=0.364  Sum_probs=31.4

Q ss_pred             CCcceEEEEcCChhHHHHHHHHHHcCCc-eEEEEEeecC
Q psy16200         67 ILKGTVIVLGAGDTAFDCATSALRCGAN-KVLVVFRKGC  104 (183)
Q Consensus        67 ~~~~~VvViGgG~~g~e~A~~l~~~G~~-~V~lv~r~~~  104 (183)
                      ....+|+|+|.|.+-.|....|.++|.+ ++|++.|++.
T Consensus       194 ~~~drVli~GsgLt~~D~v~~l~~~gh~g~It~iSRrGl  232 (474)
T COG4529         194 DADDRVLIVGSGLTSIDQVLVLRRRGHKGPITAISRRGL  232 (474)
T ss_pred             cCCCceEEecCCchhHHHHHHHhccCCccceEEEecccc
Confidence            3456699999999999999999987632 6999999763

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=94.13  E-value=0.093  Score=41.66  Aligned_cols=33  Identities=18%  Similarity=0.252  Sum_probs=30.4

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      .+|+|||.|-+|.++|..|++.|..+++++...
T Consensus        33 ~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D   65 (245)
T PRK05690         33 ARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFD   65 (245)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            569999999999999999999999899999864

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=94.11  E-value=0.08  Score=42.76  Aligned_cols=31  Identities=26%  Similarity=0.380  Sum_probs=28.3

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      ||.|||+|.+|.-+|..|++.|. +|+++.|+
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~~g~-~V~~~~r~   32 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQAGH-DVTLVARR   32 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCC-eEEEEECC
Confidence            58999999999999999999986 79999874

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=94.07  E-value=0.09  Score=42.76  Aligned_cols=34  Identities=35%  Similarity=0.437  Sum_probs=30.4

Q ss_pred             cceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      +++|+|+|.|.+|..+|..|..+|+ +|+++.|+.
T Consensus       151 gk~v~IiG~G~iG~avA~~L~~~G~-~V~v~~R~~  184 (287)
T TIGR02853       151 GSNVMVLGFGRTGMTIARTFSALGA-RVFVGARSS  184 (287)
T ss_pred             CCEEEEEcChHHHHHHHHHHHHCCC-EEEEEeCCH
Confidence            4569999999999999999999998 799998754

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PTZ00058 glutathione reductase; Provisional

Probab=94.06  E-value=0.074  Score=47.28  Aligned_cols=31  Identities=35%  Similarity=0.482  Sum_probs=28.7

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      .|+|||||..|..+|..++++|. +|.+|++.
T Consensus        50 DvvVIG~G~aG~~aA~~aa~~G~-~ValIEk~   80 (561)
T PTZ00058         50 DLIVIGGGSGGMAAARRAARNKA-KVALVEKD   80 (561)
T ss_pred             cEEEECcCHHHHHHHHHHHHcCC-eEEEEecc
Confidence            49999999999999999999996 79999974

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=94.05  E-value=0.076  Score=46.98  Aligned_cols=32  Identities=31%  Similarity=0.463  Sum_probs=29.1

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      .|+|||+|..|+-+|..+++.|+ +|.|+++.+
T Consensus         6 DVvVVG~G~AGl~AAl~Aa~~G~-~VivlEK~~   37 (549)
T PRK12834          6 DVIVVGAGLAGLVAAAELADAGK-RVLLLDQEN   37 (549)
T ss_pred             CEEEECcCHHHHHHHHHHHHCCC-eEEEEeCCC
Confidence            39999999999999999999997 699999755

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.04  E-value=0.18  Score=40.92  Aligned_cols=35  Identities=17%  Similarity=0.178  Sum_probs=30.6

Q ss_pred             CcceEEEEcCCh-hHHHHHHHHHHcCCceEEEEEeec
Q psy16200         68 LKGTVIVLGAGD-TAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        68 ~~~~VvViGgG~-~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      .+++|+|+|.|. +|.-+|..|.+.|+ .|++++|++
T Consensus       158 ~Gk~vvViG~gg~vGkpia~~L~~~ga-tVtv~~~~t  193 (283)
T PRK14192        158 AGKHAVVVGRSAILGKPMAMMLLNANA-TVTICHSRT  193 (283)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHhCCC-EEEEEeCCc
Confidence            456799999997 99999999999998 799999853

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=94.04  E-value=0.096  Score=41.09  Aligned_cols=35  Identities=31%  Similarity=0.482  Sum_probs=31.7

Q ss_pred             cceEEEEcCChhHHHHHHHHHHcCCc--eEEEEEeec
Q psy16200         69 KGTVIVLGAGDTAFDCATSALRCGAN--KVLVVFRKG  103 (183)
Q Consensus        69 ~~~VvViGgG~~g~e~A~~l~~~G~~--~V~lv~r~~  103 (183)
                      +++++|+|+|-.|.-+|..|.+.|.+  +++++.|.+
T Consensus        25 ~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g   61 (226)
T cd05311          25 EVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG   61 (226)
T ss_pred             CCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence            35799999999999999999999987  899999874

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=94.01  E-value=0.084  Score=43.19  Aligned_cols=33  Identities=27%  Similarity=0.277  Sum_probs=29.5

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      .+|.|||+|.+|..+|..|++.|. +|+++.|+.
T Consensus         3 ~~V~VIG~G~mG~~iA~~la~~G~-~V~v~d~~~   35 (308)
T PRK06129          3 GSVAIIGAGLIGRAWAIVFARAGH-EVRLWDADP   35 (308)
T ss_pred             cEEEEECccHHHHHHHHHHHHCCC-eeEEEeCCH
Confidence            369999999999999999999997 699998764

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=93.99  E-value=0.098  Score=44.75  Aligned_cols=34  Identities=32%  Similarity=0.395  Sum_probs=29.9

Q ss_pred             CcceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         68 LKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        68 ~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      .+++|+|+|.|.+|.-+|..+..+|+ +|+++++.
T Consensus       201 ~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d  234 (413)
T cd00401         201 AGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVD  234 (413)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            45679999999999999999999998 69888764

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=93.99  E-value=0.09  Score=42.50  Aligned_cols=31  Identities=23%  Similarity=0.360  Sum_probs=28.4

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      .|+|||+|..|+-+|..|...|. +|++++++
T Consensus         3 siaIVGaGiAGl~aA~~L~~aG~-~vtV~eKg   33 (331)
T COG3380           3 SIAIVGAGIAGLAAAYALREAGR-EVTVFEKG   33 (331)
T ss_pred             cEEEEccchHHHHHHHHHHhcCc-EEEEEEcC
Confidence            38999999999999999999996 79999974

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=93.97  E-value=0.091  Score=43.14  Aligned_cols=34  Identities=24%  Similarity=0.314  Sum_probs=29.8

Q ss_pred             cceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      +++|+|||+|.+|..++..|...|.++|+++.|.
T Consensus       178 ~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~  211 (311)
T cd05213         178 GKKVLVIGAGEMGELAAKHLAAKGVAEITIANRT  211 (311)
T ss_pred             CCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            4679999999999999999988887789998775

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=93.96  E-value=0.1  Score=42.10  Aligned_cols=34  Identities=26%  Similarity=0.420  Sum_probs=30.2

Q ss_pred             cceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      +++|+|+|+|-+|..++..|+..|..+|+++.|+
T Consensus       123 ~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~  156 (278)
T PRK00258        123 GKRILILGAGGAARAVILPLLDLGVAEITIVNRT  156 (278)
T ss_pred             CCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            4569999999999999999999996689999875

>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain

Probab=93.95  E-value=0.31  Score=36.55  Aligned_cols=54  Identities=13%  Similarity=0.129  Sum_probs=38.0

Q ss_pred             EEEEc-CChhHHHHHHHHHHcCCceEEEEEeecCCcCCCCHHHHHHHHHcCcEEEe
Q psy16200         72 VIVLG-AGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLP  126 (183)
Q Consensus        72 VvViG-gG~~g~e~A~~l~~~G~~~V~lv~r~~~~~~~~~~~~~~~~~~~gv~~~~  126 (183)
                      ++|+| .|.+|..+|++|++.+++++.++.|++.. .+.....+..+...|..+..
T Consensus         3 ylitGG~gglg~~la~~La~~~~~~~il~~r~~~~-~~~~~~~i~~l~~~g~~v~~   57 (181)
T PF08659_consen    3 YLITGGLGGLGQSLARWLAERGARRLILLGRSGAP-SAEAEAAIRELESAGARVEY   57 (181)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTT-SEEEEEESSGGG-STTHHHHHHHHHHTT-EEEE
T ss_pred             EEEECCccHHHHHHHHHHHHcCCCEEEEeccCCCc-cHHHHHHHHHHHhCCCceee
Confidence            67776 78899999999999998889999887421 22333456667777776543

It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....

>KOG3851|consensus

Probab=93.93  E-value=0.095  Score=43.36  Aligned_cols=33  Identities=24%  Similarity=0.333  Sum_probs=27.2

Q ss_pred             eEEEEcCChhHHHHHHHH-HHcCCceEEEEEeec
Q psy16200         71 TVIVLGAGDTAFDCATSA-LRCGANKVLVVFRKG  103 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l-~~~G~~~V~lv~r~~  103 (183)
                      +|+|+|||.-|+.+|..+ .++|..+|-|++.+.
T Consensus        41 kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e   74 (446)
T KOG3851|consen   41 KVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAE   74 (446)
T ss_pred             EEEEEcCCcchhHHHHHHHhhcCCCceEEecchh
Confidence            599999999999988755 456777899998754

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=93.93  E-value=0.098  Score=42.37  Aligned_cols=33  Identities=27%  Similarity=0.215  Sum_probs=29.6

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      ++|.|||+|.+|..+|..|++.|. +|+++.++.
T Consensus         5 ~kI~vIGaG~mG~~iA~~la~~G~-~V~l~d~~~   37 (292)
T PRK07530          5 KKVGVIGAGQMGNGIAHVCALAGY-DVLLNDVSA   37 (292)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCCH
Confidence            569999999999999999999997 799998753

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=93.85  E-value=0.098  Score=46.49  Aligned_cols=34  Identities=15%  Similarity=0.294  Sum_probs=29.4

Q ss_pred             ceEEEEcCChhHHHHHHHHHHc----CCceEEEEEeecC
Q psy16200         70 GTVIVLGAGDTAFDCATSALRC----GANKVLVVFRKGC  104 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~----G~~~V~lv~r~~~  104 (183)
                      ++|+|||||..|+-+|.+|++.    |. +|+|+++.+.
T Consensus        23 ~~a~IIGaGiAGLAAA~~L~~dg~~~G~-~VtIlEk~~~   60 (576)
T PRK13977         23 KKAYIIGSGLASLAAAVFLIRDGQMPGE-NITILEELDV   60 (576)
T ss_pred             CeEEEECCCHHHHHHHHHHHHccCCCCC-cEEEEeCCCC
Confidence            4699999999999999999986    44 7999998653

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=93.84  E-value=0.13  Score=38.56  Aligned_cols=35  Identities=23%  Similarity=0.158  Sum_probs=29.9

Q ss_pred             CcceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         68 LKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        68 ~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      .+++|.|||.|.+|..+|+.|..+|+ +|..+.|..
T Consensus        35 ~g~tvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~~~   69 (178)
T PF02826_consen   35 RGKTVGIIGYGRIGRAVARRLKAFGM-RVIGYDRSP   69 (178)
T ss_dssp             TTSEEEEESTSHHHHHHHHHHHHTT--EEEEEESSC
T ss_pred             CCCEEEEEEEcCCcCeEeeeeecCCc-eeEEecccC
Confidence            34569999999999999999999998 699988754

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively

Probab=93.83  E-value=0.09  Score=43.05  Aligned_cols=32  Identities=25%  Similarity=0.375  Sum_probs=29.8

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      ||+|+|+|-.|.++|+.|++.|..+++++...
T Consensus         1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D   32 (307)
T cd01486           1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSG   32 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence            58999999999999999999999999999863

This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=93.82  E-value=0.11  Score=42.51  Aligned_cols=32  Identities=19%  Similarity=0.245  Sum_probs=29.2

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      -+|+|||+|.+|.-+|..|++.|. +|+++.|+
T Consensus         6 m~I~IiG~GaiG~~lA~~L~~~g~-~V~~~~r~   37 (313)
T PRK06249          6 PRIGIIGTGAIGGFYGAMLARAGF-DVHFLLRS   37 (313)
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCC-eEEEEEeC
Confidence            369999999999999999999996 79999885

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=93.80  E-value=0.12  Score=42.04  Aligned_cols=34  Identities=24%  Similarity=0.276  Sum_probs=30.0

Q ss_pred             cceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      +++++|+|+|-+|.-+|..|++.|+++|+++.|+
T Consensus       126 ~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~  159 (289)
T PRK12548        126 GKKLTVIGAGGAATAIQVQCALDGAKEITIFNIK  159 (289)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence            3569999999999999999999998779999876

>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase

Probab=93.79  E-value=0.27  Score=42.04  Aligned_cols=31  Identities=32%  Similarity=0.362  Sum_probs=27.6

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      |+.|||.|-+|+-+|++|.+.|. +|+....+
T Consensus         1 ~~~~iG~G~~G~a~a~~l~~~G~-~V~~sD~~   31 (433)
T TIGR01087         1 KILILGLGKTGRAVARFLHKKGA-EVTVTDLK   31 (433)
T ss_pred             CEEEEEeCHhHHHHHHHHHHCCC-EEEEEeCC
Confidence            47899999999999999999998 69998765

>TIGR00518 alaDH alanine dehydrogenase

Probab=93.74  E-value=0.11  Score=43.80  Aligned_cols=33  Identities=27%  Similarity=0.350  Sum_probs=29.9

Q ss_pred             cceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      +++|+|+|+|.+|..++..|..+|+ +|+++.|+
T Consensus       167 ~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~  199 (370)
T TIGR00518       167 PGDVTIIGGGVVGTNAAKMANGLGA-TVTILDIN  199 (370)
T ss_pred             CceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECC
Confidence            4679999999999999999999998 69999875

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=93.71  E-value=0.11  Score=42.10  Aligned_cols=33  Identities=27%  Similarity=0.244  Sum_probs=29.6

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      ++|.|||+|.+|..+|..|+..|. +|+++.++.
T Consensus         5 ~~V~vIG~G~mG~~iA~~l~~~G~-~V~~~d~~~   37 (295)
T PLN02545          5 KKVGVVGAGQMGSGIAQLAAAAGM-DVWLLDSDP   37 (295)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCH
Confidence            569999999999999999999996 799998754

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=93.70  E-value=0.12  Score=42.15  Aligned_cols=35  Identities=37%  Similarity=0.396  Sum_probs=31.3

Q ss_pred             CcceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         68 LKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        68 ~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      .+++|+|+|.|.+|..++..|.++|+ +|+++.|++
T Consensus       151 ~g~kvlViG~G~iG~~~a~~L~~~Ga-~V~v~~r~~  185 (296)
T PRK08306        151 HGSNVLVLGFGRTGMTLARTLKALGA-NVTVGARKS  185 (296)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECCH
Confidence            35679999999999999999999998 799998864

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=93.70  E-value=0.14  Score=37.11  Aligned_cols=34  Identities=35%  Similarity=0.486  Sum_probs=28.7

Q ss_pred             cceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      +++++|+|+|.+|..++..|.+.|.++|+++.|+
T Consensus        19 ~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~   52 (155)
T cd01065          19 GKKVLILGAGGAARAVAYALAELGAAKIVIVNRT   52 (155)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCC
Confidence            4679999999999999999999864478888664

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=93.70  E-value=0.11  Score=40.85  Aligned_cols=33  Identities=24%  Similarity=0.278  Sum_probs=30.4

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      .+|+|+|.|-+|.++|..|++.|..+.+|+...
T Consensus        12 ~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D   44 (231)
T cd00755          12 AHVAVVGLGGVGSWAAEALARSGVGKLTLIDFD   44 (231)
T ss_pred             CCEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            469999999999999999999999899999864

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK08223 hypothetical protein; Validated

Probab=93.68  E-value=0.12  Score=42.05  Aligned_cols=34  Identities=18%  Similarity=0.078  Sum_probs=31.0

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      .+|+|||+|-.|..+|.+|++.|..+++++....
T Consensus        28 s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~   61 (287)
T PRK08223         28 SRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDV   61 (287)
T ss_pred             CCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence            4699999999999999999999999999998643

>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase

Probab=93.61  E-value=0.19  Score=43.26  Aligned_cols=49  Identities=12%  Similarity=-0.055  Sum_probs=35.9

Q ss_pred             eEEEEcCChhHHH-HHHHHHHcCCceEEEEEeecCCcCCCCHHHHHHHHHcCcEEEeC
Q psy16200         71 TVIVLGAGDTAFD-CATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPF  127 (183)
Q Consensus        71 ~VvViGgG~~g~e-~A~~l~~~G~~~V~lv~r~~~~~~~~~~~~~~~~~~~gv~~~~~  127 (183)
                      ++.+||-|-+||. +|++|+++|. +|+.......   +    ....+.+.|+.+..+
T Consensus         1 ~~~~iGiggsGm~~la~~L~~~G~-~v~~~D~~~~---~----~~~~l~~~gi~~~~g   50 (448)
T TIGR01082         1 KIHFVGIGGIGMSGIAEILLNRGY-QVSGSDIAEN---A----TTKRLEALGIPIYIG   50 (448)
T ss_pred             CEEEEEECHHHHHHHHHHHHHCCC-eEEEECCCcc---h----HHHHHHHCcCEEeCC
Confidence            3789999999998 9999999998 6988764321   1    233456668877644

UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=93.59  E-value=0.1  Score=46.32  Aligned_cols=32  Identities=28%  Similarity=0.408  Sum_probs=29.2

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      .|+|||+|..|+-+|..+++.|+ +|.||++.+
T Consensus         9 DvvVvG~G~aG~~aA~~aa~~G~-~v~llEk~~   40 (557)
T PRK07843          9 DVVVVGSGAAGMVAALTAAHRGL-STVVVEKAP   40 (557)
T ss_pred             CEEEECcCHHHHHHHHHHHHCCC-CEEEEeCCC
Confidence            49999999999999999999997 699999854

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=93.57  E-value=0.13  Score=39.49  Aligned_cols=32  Identities=34%  Similarity=0.392  Sum_probs=27.9

Q ss_pred             cceEEEEcCChhHHHHHHHHHHcCCceEEEEEe
Q psy16200         69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFR  101 (183)
Q Consensus        69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r  101 (183)
                      +++++|+|.|.+|.-+|+.|.+.|+ +|++..+
T Consensus        28 gk~v~I~G~G~vG~~~A~~L~~~G~-~Vvv~D~   59 (200)
T cd01075          28 GKTVAVQGLGKVGYKLAEHLLEEGA-KLIVADI   59 (200)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcC
Confidence            4569999999999999999999998 6887654

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=93.47  E-value=0.15  Score=37.83  Aligned_cols=32  Identities=31%  Similarity=0.421  Sum_probs=28.7

Q ss_pred             EEEEcC-ChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200         72 VIVLGA-GDTAFDCATSALRCGANKVLVVFRKGC  104 (183)
Q Consensus        72 VvViGg-G~~g~e~A~~l~~~G~~~V~lv~r~~~  104 (183)
                      |+|+|| |.+|-.++..|.+.|. +|+.+.|++.
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~-~V~~~~R~~~   33 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGH-EVTALVRSPS   33 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTS-EEEEEESSGG
T ss_pred             eEEECCCChHHHHHHHHHHHCCC-EEEEEecCch
Confidence            689997 9999999999999996 7999998754

...

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=93.46  E-value=0.2  Score=42.03  Aligned_cols=93  Identities=20%  Similarity=0.278  Sum_probs=55.3

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCC-----------cCCCC--HHHHHH----HHHcCcEEEeCCcceEE
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCT-----------NIRAV--PEEVQL----AWEEKCEFLPFMSPVQV  133 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~-----------~~~~~--~~~~~~----~~~~gv~~~~~~~~~~i  133 (183)
                      .|+|||||..|..+|.+.+|.|.+.=.+-+|-+.-           ..|..  +.....    ..+..|+++...+..++
T Consensus       213 DVLvVGgGPAgaaAAiYaARKGiRTGl~aerfGGQvldT~~IENfIsv~~teGpkl~~ale~Hv~~Y~vDimn~qra~~l  292 (520)
T COG3634         213 DVLVVGGGPAGAAAAIYAARKGIRTGLVAERFGGQVLDTMGIENFISVPETEGPKLAAALEAHVKQYDVDVMNLQRASKL  292 (520)
T ss_pred             eEEEEcCCcchhHHHHHHHhhcchhhhhhhhhCCeeccccchhheeccccccchHHHHHHHHHHhhcCchhhhhhhhhcc
Confidence            49999999999999999999987532333332110           01111  111111    23446777777777776


Q ss_pred             Ec--cCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEccccc
Q psy16200        134 DV--KDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGST  178 (183)
Q Consensus       134 ~~--~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~  178 (183)
                      ..  +.+.+..+++.             +|.  .+.+.+||+|+|.+
T Consensus       293 ~~a~~~~~l~ev~l~-------------nGa--vLkaktvIlstGAr  324 (520)
T COG3634         293 EPAAVEGGLIEVELA-------------NGA--VLKARTVILATGAR  324 (520)
T ss_pred             eecCCCCccEEEEec-------------CCc--eeccceEEEecCcc
Confidence            54  22334334442             232  57788899999865

>COG1231 Monoamine oxidase [Amino acid transport and metabolism]

Probab=93.45  E-value=0.15  Score=43.71  Aligned_cols=36  Identities=22%  Similarity=0.333  Sum_probs=30.8

Q ss_pred             CcceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200         68 LKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC  104 (183)
Q Consensus        68 ~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~  104 (183)
                      ...+|+|+|+|++|+-.|..|.+.|- +|++++-+++
T Consensus         6 ~~~~viivGaGlaGL~AA~eL~kaG~-~v~ilEar~r   41 (450)
T COG1231           6 KTADVIIVGAGLAGLSAAYELKKAGY-QVQILEARDR   41 (450)
T ss_pred             CCCcEEEECCchHHHHHHHHHhhcCc-EEEEEeccCC
Confidence            33469999999999999999999998 6999986543

>KOG0404|consensus

Probab=93.45  E-value=0.69  Score=36.60  Aligned_cols=30  Identities=27%  Similarity=0.383  Sum_probs=25.3

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEE
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVF  100 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~  100 (183)
                      .+|+|||.|..|..+|.++++...| -.+++
T Consensus         9 e~v~IiGSGPAa~tAAiYaaraelk-PllfE   38 (322)
T KOG0404|consen    9 ENVVIIGSGPAAHTAAIYAARAELK-PLLFE   38 (322)
T ss_pred             eeEEEEccCchHHHHHHHHhhcccC-ceEEe
Confidence            4799999999999999999998663 55665

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=93.43  E-value=0.13  Score=40.21  Aligned_cols=32  Identities=25%  Similarity=0.411  Sum_probs=28.8

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      +++|+|+|..|..+|+.|.+.|. .|+++.+..
T Consensus         2 ~iiIiG~G~vG~~va~~L~~~g~-~Vv~Id~d~   33 (225)
T COG0569           2 KIIIIGAGRVGRSVARELSEEGH-NVVLIDRDE   33 (225)
T ss_pred             EEEEECCcHHHHHHHHHHHhCCC-ceEEEEcCH
Confidence            58999999999999999999996 699998743

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=93.42  E-value=0.12  Score=45.28  Aligned_cols=35  Identities=26%  Similarity=0.252  Sum_probs=30.9

Q ss_pred             CcceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         68 LKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        68 ~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      .+.+|+|+|+|.+|+-++..+..+|+ +|+++++++
T Consensus       164 pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~  198 (509)
T PRK09424        164 PPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRP  198 (509)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCH
Confidence            46789999999999999999999998 699887653

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=93.42  E-value=0.13  Score=44.02  Aligned_cols=34  Identities=29%  Similarity=0.442  Sum_probs=30.1

Q ss_pred             cceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      +++|+|+|+|.+|..++..|...|..+|+++.|.
T Consensus       180 ~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs  213 (417)
T TIGR01035       180 GKKALLIGAGEMGELVAKHLLRKGVGKILIANRT  213 (417)
T ss_pred             CCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCC
Confidence            4569999999999999999999996679998875

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.41  E-value=0.28  Score=39.86  Aligned_cols=35  Identities=26%  Similarity=0.198  Sum_probs=30.3

Q ss_pred             CcceEEEEcCC-hhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         68 LKGTVIVLGAG-DTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        68 ~~~~VvViGgG-~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      .+++|+|||.| .+|.-+|..|.+.|+ .|++++.++
T Consensus       156 ~Gk~vvVvGrs~~VG~Pla~lL~~~gA-tVtv~hs~t  191 (285)
T PRK14191        156 KGKDVVIIGASNIVGKPLAMLMLNAGA-SVSVCHILT  191 (285)
T ss_pred             CCCEEEEECCCchhHHHHHHHHHHCCC-EEEEEeCCc
Confidence            35679999999 899999999999998 799998654

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=93.36  E-value=0.11  Score=46.06  Aligned_cols=31  Identities=29%  Similarity=0.465  Sum_probs=28.4

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      .|+|||+|..|+-+|..+++.|. +|.|+++.
T Consensus         8 DvvIiG~G~aGl~aA~~~a~~G~-~v~liEk~   38 (557)
T PRK12844          8 DVVVVGSGGGGMCAALAAADSGL-EPLIVEKQ   38 (557)
T ss_pred             CEEEECcCHHHHHHHHHHHHCCC-cEEEEecC
Confidence            49999999999999999999997 69999974

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=93.34  E-value=0.39  Score=42.84  Aligned_cols=54  Identities=11%  Similarity=0.111  Sum_probs=41.2

Q ss_pred             HHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCceEEEEC-CEEEEccccccc
Q psy16200        115 QLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKA-NYIISAFGSTLL  180 (183)
Q Consensus       115 ~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~-D~Vi~a~G~~p~  180 (183)
                      ..+++.|+++++++.+.++..++++|+++.+.            ..++.+.+.+ +.||+|+|--..
T Consensus       229 ~~~~~~Gv~i~~~t~v~~Li~~~g~V~GV~~~------------~~g~~~~i~A~~~VVlAtGg~~~  283 (578)
T PRK12843        229 YSLRARGVRILTQTDVESLETDHGRVIGATVV------------QGGVRRRIRARGGVVLATGGFNR  283 (578)
T ss_pred             HHHHhCCCEEEeCCEEEEEEeeCCEEEEEEEe------------cCCeEEEEEccceEEECCCCccc
Confidence            34567899999999999987656888888763            2455667886 789999997554

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=93.33  E-value=0.13  Score=41.65  Aligned_cols=30  Identities=27%  Similarity=0.393  Sum_probs=27.6

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEe
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFR  101 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r  101 (183)
                      ||+|+|+|.+|.-+|..|++.|. +|+++.|
T Consensus         2 kI~IiG~G~iG~~~a~~L~~~g~-~V~~~~r   31 (305)
T PRK12921          2 RIAVVGAGAVGGTFGGRLLEAGR-DVTFLVR   31 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHHCCC-ceEEEec
Confidence            58999999999999999999986 6999977

>TIGR00936 ahcY adenosylhomocysteinase

Probab=93.33  E-value=0.14  Score=43.63  Aligned_cols=35  Identities=31%  Similarity=0.226  Sum_probs=30.4

Q ss_pred             CcceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         68 LKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        68 ~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      .+++|+|+|.|.+|.-+|..+..+|+ +|.++++.+
T Consensus       194 ~Gk~VvViG~G~IG~~vA~~ak~~Ga-~ViV~d~dp  228 (406)
T TIGR00936       194 AGKTVVVAGYGWCGKGIAMRARGMGA-RVIVTEVDP  228 (406)
T ss_pred             CcCEEEEECCCHHHHHHHHHHhhCcC-EEEEEeCCh
Confidence            45679999999999999999999998 699887653

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E

Probab=93.32  E-value=0.36  Score=42.92  Aligned_cols=53  Identities=11%  Similarity=0.153  Sum_probs=41.6

Q ss_pred             HHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEccccc
Q psy16200        116 LAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGST  178 (183)
Q Consensus       116 ~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~  178 (183)
                      .+.+.||+++.++.++++..+++++.++.....          .+|+...+.++.||+|+|--
T Consensus       128 ~~~~~gi~i~~~~~~~~Li~~~g~v~Ga~~~~~----------~~g~~~~i~AkaVILATGG~  180 (565)
T TIGR01816       128 QNLKADTSFFNEYFALDLLMEDGECRGVIAYCL----------ETGEIHRFRAKAVVLATGGY  180 (565)
T ss_pred             HHHhCCCEEEeccEEEEEEeeCCEEEEEEEEEc----------CCCcEEEEEeCeEEECCCCc
Confidence            345689999999999998766788988876421          35667788999999999954

coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.

>PRK00676 hemA glutamyl-tRNA reductase; Validated

Probab=93.28  E-value=0.14  Score=42.66  Aligned_cols=34  Identities=18%  Similarity=0.276  Sum_probs=30.3

Q ss_pred             cceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      +++|+|||+|.+|--+|..|.+.|.+++++..|.
T Consensus       174 ~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt  207 (338)
T PRK00676        174 KASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQ  207 (338)
T ss_pred             CCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            3569999999999999999999998778888775

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=93.26  E-value=0.12  Score=44.38  Aligned_cols=31  Identities=29%  Similarity=0.491  Sum_probs=28.2

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      +|+|||+|..|+-+|..+++.|. +|+++++.
T Consensus         4 DviIIG~G~aGl~aA~~la~~g~-~v~vi~~~   34 (422)
T PRK05329          4 DVLVIGGGLAGLTAALAAAEAGK-RVALVAKG   34 (422)
T ss_pred             CEEEECccHHHHHHHHHHHHCCC-cEEEEECC
Confidence            39999999999999999999997 69999864

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=93.25  E-value=0.13  Score=41.52  Aligned_cols=33  Identities=24%  Similarity=0.233  Sum_probs=29.3

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      ++|.|||+|.+|..+|..+++.|. +|+++.+++
T Consensus         4 ~kI~VIG~G~mG~~ia~~la~~g~-~V~~~d~~~   36 (282)
T PRK05808          4 QKIGVIGAGTMGNGIAQVCAVAGY-DVVMVDISD   36 (282)
T ss_pred             cEEEEEccCHHHHHHHHHHHHCCC-ceEEEeCCH
Confidence            469999999999999999999997 699998654

>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=93.24  E-value=0.13  Score=42.76  Aligned_cols=37  Identities=19%  Similarity=0.225  Sum_probs=32.1

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCCcCC
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIR  108 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~~~~  108 (183)
                      .|-|||||..|.|+|..+++.|. .|.|.++|+...-|
T Consensus         5 ~i~VIGaGLAGSEAAwqiA~~Gv-~V~L~EMRp~k~Tp   41 (439)
T COG1206           5 PINVIGAGLAGSEAAWQIAKRGV-PVILYEMRPVKGTP   41 (439)
T ss_pred             ceEEEcccccccHHHHHHHHcCC-cEEEEEcccccCCC
Confidence            38999999999999999999998 69999998764333

>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit

Probab=93.24  E-value=0.4  Score=42.06  Aligned_cols=52  Identities=13%  Similarity=0.253  Sum_probs=40.6

Q ss_pred             HHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccc
Q psy16200        116 LAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGS  177 (183)
Q Consensus       116 ~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~  177 (183)
                      .+.+.|+++++++.+.++..+++++.++++.+.          .+|+..++.|+.||.|+|.
T Consensus       137 ~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~~~----------~~g~~~~i~a~~VVnAaG~  188 (516)
T TIGR03377       137 DAQEHGARIFTYTKVTGLIREGGRVTGVKVEDH----------KTGEEERIEAQVVINAAGI  188 (516)
T ss_pred             HHHHcCCEEEcCcEEEEEEEECCEEEEEEEEEc----------CCCcEEEEEcCEEEECCCc
Confidence            456789999999999999766677777776431          3455678999999999995

Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=93.24  E-value=0.16  Score=38.45  Aligned_cols=33  Identities=36%  Similarity=0.443  Sum_probs=28.7

Q ss_pred             cceEEEEcC-ChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         69 KGTVIVLGA-GDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        69 ~~~VvViGg-G~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      +++++|+|| |.+|..++..|++.|. +|+++.|+
T Consensus        28 ~~~vlVlGgtG~iG~~~a~~l~~~g~-~V~l~~R~   61 (194)
T cd01078          28 GKTAVVLGGTGPVGQRAAVLLAREGA-RVVLVGRD   61 (194)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCC
Confidence            356999997 9999999999999986 79999875

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=93.22  E-value=0.15  Score=38.71  Aligned_cols=31  Identities=23%  Similarity=0.266  Sum_probs=24.9

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      ||.|||-|++|+-+|..|++.|. +|+-+...
T Consensus         2 ~I~ViGlGyvGl~~A~~lA~~G~-~V~g~D~~   32 (185)
T PF03721_consen    2 KIAVIGLGYVGLPLAAALAEKGH-QVIGVDID   32 (185)
T ss_dssp             EEEEE--STTHHHHHHHHHHTTS-EEEEE-S-
T ss_pred             EEEEECCCcchHHHHHHHHhCCC-EEEEEeCC
Confidence            69999999999999999999996 79998754

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]

Probab=93.19  E-value=0.13  Score=42.70  Aligned_cols=29  Identities=24%  Similarity=0.554  Sum_probs=27.0

Q ss_pred             EEEEcCChhHHHHHHHHHHcCCceEEEEEe
Q psy16200         72 VIVLGAGDTAFDCATSALRCGANKVLVVFR  101 (183)
Q Consensus        72 VvViGgG~~g~e~A~~l~~~G~~~V~lv~r  101 (183)
                      |+|||||..|+-|+..|.+.|. ++.||.+
T Consensus         5 v~IIGGGLAGltc~l~l~~~Gk-~c~iv~~   33 (421)
T COG3075           5 VAIIGGGLAGLTCGLALQQAGK-RCAIVNR   33 (421)
T ss_pred             EEEEcCcHHHHHHHHHHHhcCC-cEEEEeC
Confidence            9999999999999999999995 6888886

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=93.12  E-value=0.25  Score=32.79  Aligned_cols=30  Identities=27%  Similarity=0.438  Sum_probs=26.0

Q ss_pred             eEEEEcCChhHHHHHHHHHHcC---CceEEEEEe
Q psy16200         71 TVIVLGAGDTAFDCATSALRCG---ANKVLVVFR  101 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G---~~~V~lv~r  101 (183)
                      |+.|||+|.+|.-++..|.+.|   . +|+++..
T Consensus         1 kI~iIG~G~mg~al~~~l~~~g~~~~-~v~~~~~   33 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGLLASGIKPH-EVIIVSS   33 (96)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTS-GG-EEEEEEE
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCce-eEEeecc
Confidence            5889999999999999999998   5 6887743

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=93.06  E-value=0.29  Score=42.19  Aligned_cols=49  Identities=16%  Similarity=0.249  Sum_probs=37.1

Q ss_pred             HHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccccc
Q psy16200        116 LAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTL  179 (183)
Q Consensus       116 ~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p  179 (183)
                      ++++.|++|++++.+..+..+++.+..+...             .  ..++++|.||+|.|+..
T Consensus       182 ~l~~~G~ei~f~t~VeDi~~~~~~~~~v~~~-------------~--g~~i~~~~vvlA~Grsg  230 (486)
T COG2509         182 YLESLGGEIRFNTEVEDIEIEDNEVLGVKLT-------------K--GEEIEADYVVLAPGRSG  230 (486)
T ss_pred             HHHhcCcEEEeeeEEEEEEecCCceEEEEcc-------------C--CcEEecCEEEEccCcch
Confidence            4567899999999999987655555544432             2  24899999999999864

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=93.03  E-value=0.16  Score=43.54  Aligned_cols=35  Identities=31%  Similarity=0.386  Sum_probs=30.6

Q ss_pred             CcceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         68 LKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        68 ~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      .+++|+|+|.|.+|..+|..|..+|+ +|+++.+.+
T Consensus       211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga-~ViV~d~dp  245 (425)
T PRK05476        211 AGKVVVVAGYGDVGKGCAQRLRGLGA-RVIVTEVDP  245 (425)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCc
Confidence            45669999999999999999999998 699987654

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=93.02  E-value=0.16  Score=43.48  Aligned_cols=34  Identities=29%  Similarity=0.348  Sum_probs=30.0

Q ss_pred             cceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      +++|+|+|+|.+|.-++..|...|+++|+++.|.
T Consensus       182 ~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~  215 (423)
T PRK00045        182 GKKVLVIGAGEMGELVAKHLAEKGVRKITVANRT  215 (423)
T ss_pred             CCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCC
Confidence            4569999999999999999999998779888775

>PRK06153 hypothetical protein; Provisional

Probab=93.01  E-value=0.14  Score=43.40  Aligned_cols=33  Identities=9%  Similarity=0.116  Sum_probs=30.5

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      .+|+|||+|-+|..++..|++.|..+++|+...
T Consensus       177 ~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D  209 (393)
T PRK06153        177 QRIAIIGLGGTGSYILDLVAKTPVREIHLFDGD  209 (393)
T ss_pred             CcEEEEcCCccHHHHHHHHHHcCCCEEEEECCC
Confidence            469999999999999999999999999999863

>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]

Probab=92.99  E-value=0.12  Score=43.26  Aligned_cols=34  Identities=18%  Similarity=0.169  Sum_probs=29.1

Q ss_pred             CCcceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         67 ILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        67 ~~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      .+..||+|||+|.+|+.+|-.|+++ . +||+++-.
T Consensus         6 ~~r~~IAVIGsGisGLSAA~~Ls~r-h-dVTLfEA~   39 (447)
T COG2907           6 HPRRKIAVIGSGISGLSAAWLLSRR-H-DVTLFEAD   39 (447)
T ss_pred             CCCcceEEEcccchhhhhHHhhhcc-c-ceEEEecc
Confidence            4456799999999999999999987 4 69999853

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=92.96  E-value=0.17  Score=41.25  Aligned_cols=32  Identities=22%  Similarity=0.278  Sum_probs=28.8

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      ++|.|||+|.+|..+|..|++.|. +|+++.++
T Consensus         5 ~~I~vIGaG~mG~~iA~~l~~~g~-~V~~~d~~   36 (311)
T PRK06130          5 QNLAIIGAGTMGSGIAALFARKGL-QVVLIDVM   36 (311)
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCC-eEEEEECC
Confidence            569999999999999999999997 69998764

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=92.95  E-value=0.2  Score=40.80  Aligned_cols=34  Identities=21%  Similarity=0.339  Sum_probs=29.9

Q ss_pred             cceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      +++++|+|+|-.|.-++..|+..|+++++++.|.
T Consensus       124 ~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt  157 (288)
T PRK12749        124 GKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRR  157 (288)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence            4569999999999988888989998889999875

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=92.94  E-value=0.31  Score=39.96  Aligned_cols=35  Identities=20%  Similarity=0.196  Sum_probs=30.6

Q ss_pred             CcceEEEEcCC-hhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         68 LKGTVIVLGAG-DTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        68 ~~~~VvViGgG-~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      .+++|+|||.| .+|.-+|..|.+.|+ .|+++++++
T Consensus       158 ~Gk~V~vIG~s~ivG~PmA~~L~~~ga-tVtv~~~~t  193 (301)
T PRK14194        158 TGKHAVVIGRSNIVGKPMAALLLQAHC-SVTVVHSRS  193 (301)
T ss_pred             CCCEEEEECCCCccHHHHHHHHHHCCC-EEEEECCCC
Confidence            45669999985 999999999999998 799998764

>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1

Probab=92.87  E-value=0.92  Score=35.61  Aligned_cols=34  Identities=24%  Similarity=0.239  Sum_probs=27.9

Q ss_pred             CcceEEEEcCChhHHHHHHHHHHcCCceEE-EEEee
Q psy16200         68 LKGTVIVLGAGDTAFDCATSALRCGANKVL-VVFRK  102 (183)
Q Consensus        68 ~~~~VvViGgG~~g~e~A~~l~~~G~~~V~-lv~r~  102 (183)
                      .+++|+|.|-|.+|..+|+.|.+.|++ |+ +....
T Consensus        30 ~~~~v~I~G~G~VG~~~a~~L~~~g~~-vv~v~D~~   64 (227)
T cd01076          30 AGARVAIQGFGNVGSHAARFLHEAGAK-VVAVSDSD   64 (227)
T ss_pred             cCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEECCC
Confidence            346799999999999999999999985 66 55443

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=92.86  E-value=0.19  Score=42.06  Aligned_cols=34  Identities=18%  Similarity=0.240  Sum_probs=31.1

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      .+|+|+|+|-+|.++|..|++.|..+++++....
T Consensus        29 ~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~   62 (355)
T PRK05597         29 AKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT   62 (355)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            4699999999999999999999999999998743

>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p

Probab=92.86  E-value=0.15  Score=45.77  Aligned_cols=33  Identities=24%  Similarity=0.339  Sum_probs=30.7

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      .||+|+|+|-.|+.+|++|++.|.+++++|...
T Consensus       339 ~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D  371 (664)
T TIGR01381       339 LKVLLLGAGTLGCNVARCLIGWGVRHITFVDNG  371 (664)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCC
Confidence            369999999999999999999999999999864

This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.

>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.83  E-value=0.5  Score=40.61  Aligned_cols=32  Identities=28%  Similarity=0.362  Sum_probs=28.6

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      +-|+|+|.|-+|+.+|+.|.++|. +|+.....
T Consensus         7 ~~~~v~G~G~sG~s~a~~L~~~G~-~v~~~D~~   38 (448)
T PRK03803          7 GLHIVVGLGKTGLSVVRFLARQGI-PFAVMDSR   38 (448)
T ss_pred             CeEEEEeecHhHHHHHHHHHhCCC-eEEEEeCC
Confidence            569999999999999999999997 69998754

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=92.82  E-value=0.17  Score=43.26  Aligned_cols=33  Identities=27%  Similarity=0.375  Sum_probs=29.5

Q ss_pred             cceEEEEcCChhHHHHHHHHHHcCCceEEEEEe
Q psy16200         69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFR  101 (183)
Q Consensus        69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r  101 (183)
                      .++|+|||+|.+|.-+|..|++.|.++|+++.|
T Consensus       178 ~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNR  210 (414)
T COG0373         178 DKKVLVIGAGEMGELVAKHLAEKGVKKITIANR  210 (414)
T ss_pred             cCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcC
Confidence            356999999999999999999999888888876

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=92.80  E-value=0.19  Score=42.42  Aligned_cols=33  Identities=21%  Similarity=0.361  Sum_probs=30.5

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      .+|+|||+|-+|.++|..|++.|..+++++...
T Consensus        42 ~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D   74 (370)
T PRK05600         42 ARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD   74 (370)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            469999999999999999999999899999874

>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2

Probab=92.79  E-value=0.15  Score=43.88  Aligned_cols=33  Identities=18%  Similarity=0.255  Sum_probs=29.9

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCC-----ceEEEEEeec
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGA-----NKVLVVFRKG  103 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~-----~~V~lv~r~~  103 (183)
                      ||+|||+|.+|+|++..|+..|.     .+++++....
T Consensus         1 kVlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~   38 (435)
T cd01490           1 KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDN   38 (435)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCCC
Confidence            58999999999999999999998     7899998744

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.

>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=92.76  E-value=0.36  Score=39.27  Aligned_cols=35  Identities=23%  Similarity=0.292  Sum_probs=30.2

Q ss_pred             CcceEEEEcCChh-HHHHHHHHHHcCCceEEEEEeec
Q psy16200         68 LKGTVIVLGAGDT-AFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        68 ~~~~VvViGgG~~-g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      .+++|+|||.+.+ |.-+|..|.+.|+ .|+++++++
T Consensus       157 ~Gk~vvViGrs~iVGkPla~lL~~~~a-tVt~~hs~t  192 (285)
T PRK14189        157 RGAHAVVIGRSNIVGKPMAMLLLQAGA-TVTICHSKT  192 (285)
T ss_pred             CCCEEEEECCCCccHHHHHHHHHHCCC-EEEEecCCC
Confidence            4566999998887 9999999999998 799998764

>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1

Probab=92.72  E-value=0.19  Score=40.96  Aligned_cols=34  Identities=21%  Similarity=0.303  Sum_probs=31.0

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      .+|+|+|.|-+|.|+|..|+..|.++++|+....
T Consensus        20 s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~   53 (286)
T cd01491          20 SNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKP   53 (286)
T ss_pred             CcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Confidence            4699999999999999999999999999998643

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=92.72  E-value=0.22  Score=40.24  Aligned_cols=34  Identities=24%  Similarity=0.219  Sum_probs=30.7

Q ss_pred             cceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      +++|+|+|+|-.|.-++..|.+.|+++|+++.|.
T Consensus       122 ~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~  155 (272)
T PRK12550        122 DLVVALRGSGGMAKAVAAALRDAGFTDGTIVARN  155 (272)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence            4579999999999999999999998889999875

>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=92.69  E-value=0.31  Score=45.21  Aligned_cols=51  Identities=16%  Similarity=0.021  Sum_probs=37.9

Q ss_pred             ceEEEEcCChhHHHH-HHHHHHcCCceEEEEEeecCCcCCCCHHHHHHHHHcCcEEEeCC
Q psy16200         70 GTVIVLGAGDTAFDC-ATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFM  128 (183)
Q Consensus        70 ~~VvViGgG~~g~e~-A~~l~~~G~~~V~lv~r~~~~~~~~~~~~~~~~~~~gv~~~~~~  128 (183)
                      +++.|+|-|-+|+.+ |++|.++|. +|+....+..   +    .+..+.+.|+.+..+.
T Consensus         5 ~~i~viG~G~sG~salA~~L~~~G~-~V~~sD~~~~---~----~~~~L~~~gi~~~~g~   56 (809)
T PRK14573          5 LFYHFIGIGGIGMSALAHILLDRGY-SVSGSDLSEG---K----TVEKLKAKGARFFLGH   56 (809)
T ss_pred             ceEEEEEecHHhHHHHHHHHHHCCC-eEEEECCCCC---h----HHHHHHHCCCEEeCCC
Confidence            459999999999998 999999998 6988764321   1    2344666788776554

>KOG1276|consensus

Probab=92.66  E-value=0.21  Score=42.73  Aligned_cols=36  Identities=22%  Similarity=0.197  Sum_probs=28.3

Q ss_pred             CcceEEEEcCChhHHHHHHHHHHcCCc-eEEEEEeec
Q psy16200         68 LKGTVIVLGAGDTAFDCATSALRCGAN-KVLVVFRKG  103 (183)
Q Consensus        68 ~~~~VvViGgG~~g~e~A~~l~~~G~~-~V~lv~r~~  103 (183)
                      .+.+|+|+|||.+|+-+|.+|++++.+ .|++++..+
T Consensus        10 ~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~   46 (491)
T KOG1276|consen   10 SGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASP   46 (491)
T ss_pred             ecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCC
Confidence            456799999999999999999999864 245566543

>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional

Probab=92.64  E-value=0.28  Score=40.61  Aligned_cols=36  Identities=11%  Similarity=0.013  Sum_probs=30.1

Q ss_pred             CCcceEEEEcC-ChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         67 ILKGTVIVLGA-GDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        67 ~~~~~VvViGg-G~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      ...++|+|.|| |++|..++..|.+.|. +|+.+.|..
T Consensus        13 ~~~~~vlVtGatGfiG~~lv~~L~~~g~-~V~~~d~~~   49 (348)
T PRK15181         13 LAPKRWLITGVAGFIGSGLLEELLFLNQ-TVIGLDNFS   49 (348)
T ss_pred             ccCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCCC
Confidence            34467999996 9999999999999996 699888743

>PRK04148 hypothetical protein; Provisional

Probab=92.62  E-value=0.18  Score=36.38  Aligned_cols=32  Identities=25%  Similarity=0.364  Sum_probs=28.1

Q ss_pred             cceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      ++++++||.| .|.++|..|++.|. +|+.+..+
T Consensus        17 ~~kileIG~G-fG~~vA~~L~~~G~-~ViaIDi~   48 (134)
T PRK04148         17 NKKIVELGIG-FYFKVAKKLKESGF-DVIVIDIN   48 (134)
T ss_pred             CCEEEEEEec-CCHHHHHHHHHCCC-EEEEEECC
Confidence            3579999999 99999999999997 79999765

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=92.62  E-value=0.2  Score=42.31  Aligned_cols=33  Identities=21%  Similarity=0.278  Sum_probs=30.6

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      .+|+|+|.|-+|..+|..|++.|..+++++.+.
T Consensus       136 ~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d  168 (376)
T PRK08762        136 ARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD  168 (376)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            469999999999999999999999899999874

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=92.60  E-value=0.22  Score=40.46  Aligned_cols=34  Identities=24%  Similarity=0.275  Sum_probs=30.4

Q ss_pred             cceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      +++|+|+|+|-.|--++..|++.|+++++++.|.
T Consensus       127 ~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~  160 (283)
T PRK14027        127 LDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLD  160 (283)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCC
Confidence            4569999999999999999999998889998764

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=92.54  E-value=0.22  Score=43.28  Aligned_cols=35  Identities=34%  Similarity=0.413  Sum_probs=30.4

Q ss_pred             CcceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         68 LKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        68 ~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      .+++|+|+|.|.+|..+|..|..+|+ +|+++++.+
T Consensus       253 aGKtVgVIG~G~IGr~vA~rL~a~Ga-~ViV~e~dp  287 (476)
T PTZ00075        253 AGKTVVVCGYGDVGKGCAQALRGFGA-RVVVTEIDP  287 (476)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCc
Confidence            45669999999999999999999998 699887653

>KOG0024|consensus

Probab=92.53  E-value=0.57  Score=38.75  Aligned_cols=55  Identities=24%  Similarity=0.172  Sum_probs=39.4

Q ss_pred             CCcceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCCcCCCCHHHHHHHHHcCcEEEeCCc
Q psy16200         67 ILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFMS  129 (183)
Q Consensus        67 ~~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~~~~~~~~~~~~~~~~gv~~~~~~~  129 (183)
                      .++.+|+|+|+|.+|+-....+...|+++|.+++-.        +..++.+++.|.+...+.+
T Consensus       168 k~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~--------~~Rle~Ak~~Ga~~~~~~~  222 (354)
T KOG0024|consen  168 KKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLV--------ANRLELAKKFGATVTDPSS  222 (354)
T ss_pred             ccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecC--------HHHHHHHHHhCCeEEeecc
Confidence            456789999999999999999999999999887532        1233445556655544433

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=92.43  E-value=0.22  Score=40.91  Aligned_cols=31  Identities=23%  Similarity=0.153  Sum_probs=28.1

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      ||.|||+|.+|.-+|..|++.|. +|+++.|+
T Consensus         2 kI~IiGaGa~G~ala~~L~~~g~-~V~l~~r~   32 (326)
T PRK14620          2 KISILGAGSFGTAIAIALSSKKI-SVNLWGRN   32 (326)
T ss_pred             EEEEECcCHHHHHHHHHHHHCCC-eEEEEecC
Confidence            48999999999999999999986 79999874

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=92.39  E-value=0.21  Score=42.37  Aligned_cols=33  Identities=24%  Similarity=0.327  Sum_probs=29.7

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      ++|+|||+|.+|.-+|..|++.|..+|++..|+
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs   34 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRS   34 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEEEeCC
Confidence            469999999999999999999984479999986

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=92.37  E-value=0.59  Score=41.54  Aligned_cols=53  Identities=13%  Similarity=0.161  Sum_probs=40.9

Q ss_pred             HHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCceEEEEC-CEEEEccccccc
Q psy16200        116 LAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKA-NYIISAFGSTLL  180 (183)
Q Consensus       116 ~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~-D~Vi~a~G~~p~  180 (183)
                      .+++.|+++++++.+.++..++++|+++.+.            .+++...+.+ +.||+|+|--.+
T Consensus       217 ~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~------------~~g~~~~i~A~~aVIlAtGG~~~  270 (557)
T PRK12844        217 AALAAGVPLWTNTPLTELIVEDGRVVGVVVV------------RDGREVLIRARRGVLLASGGFGH  270 (557)
T ss_pred             HHHhCCCEEEeCCEEEEEEEeCCEEEEEEEE------------ECCeEEEEEecceEEEecCCccC
Confidence            4567899999999999987667889988763            2455667888 479999986544

>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family

Probab=92.34  E-value=1.4  Score=37.24  Aligned_cols=79  Identities=13%  Similarity=0.103  Sum_probs=50.0

Q ss_pred             HHHHHHHHHHcCCceEEEEEeecCCcCCCC--HHH-----HHHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCC
Q psy16200         81 AFDCATSALRCGANKVLVVFRKGCTNIRAV--PEE-----VQLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEK  153 (183)
Q Consensus        81 g~e~A~~l~~~G~~~V~lv~r~~~~~~~~~--~~~-----~~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~  153 (183)
                      .-|+..++.++|..  +-.++.++. .|.+  ...     ...+.+.||+++++..+.+|.  ++.. .+++        
T Consensus        56 ~~d~~~fF~~~Gi~--~~~e~~grv-fP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i~--~~~~-~v~~--------  121 (376)
T TIGR03862        56 AVALQDWARGLGIE--TFVGSSGRV-FPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGWQ--GGTL-RFET--------  121 (376)
T ss_pred             HHHHHHHHHHCCCc--eEECCCCEE-CCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEe--CCcE-EEEE--------
Confidence            45677888888863  234444442 4543  222     234577899999999999983  3322 2332        


Q ss_pred             CCeecCCCceEEEECCEEEEcccccc
Q psy16200        154 GEWVEDEEQRIKLKANYIISAFGSTL  179 (183)
Q Consensus       154 ~~~~~~~g~~~~i~~D~Vi~a~G~~p  179 (183)
                            ......+.||.||+|+|-.+
T Consensus       122 ------~~~~~~~~a~~vIlAtGG~s  141 (376)
T TIGR03862       122 ------PDGQSTIEADAVVLALGGAS  141 (376)
T ss_pred             ------CCCceEEecCEEEEcCCCcc
Confidence                  11223589999999999865

This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.

>PLN02494 adenosylhomocysteinase

Probab=92.31  E-value=0.24  Score=43.01  Aligned_cols=35  Identities=26%  Similarity=0.392  Sum_probs=30.4

Q ss_pred             CcceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         68 LKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        68 ~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      .+++|+|+|.|.+|..+|..+..+|+ +|.++.+.+
T Consensus       253 aGKtVvViGyG~IGr~vA~~aka~Ga-~VIV~e~dp  287 (477)
T PLN02494        253 AGKVAVICGYGDVGKGCAAAMKAAGA-RVIVTEIDP  287 (477)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCc
Confidence            35669999999999999999999998 699887654

>PRK06057 short chain dehydrogenase; Provisional

Probab=92.29  E-value=0.26  Score=38.56  Aligned_cols=33  Identities=18%  Similarity=0.160  Sum_probs=28.7

Q ss_pred             cceEEEEcC-ChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         69 KGTVIVLGA-GDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        69 ~~~VvViGg-G~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      +++|+|+|| |.+|..++..|+++|. +|.++.|+
T Consensus         7 ~~~vlItGasggIG~~~a~~l~~~G~-~v~~~~r~   40 (255)
T PRK06057          7 GRVAVITGGGSGIGLATARRLAAEGA-TVVVGDID   40 (255)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCC
Confidence            456999986 9999999999999997 69998775

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	183
1h7x_A	1025	Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ter		3e-55
1h7w_A	1025	Dihydropyrimidine Dehydrogenase (Dpd) From Pig Leng		3e-55
2vdc_G	456	The 9.5 A Resolution Structure Of Glutamate Synthas		1e-06

>pdb|1H7X|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary Complex Of A Mutant Enzyme (C671a), Nadph And 5- Fluorouracil Length = 1025

Iteration: 1
 Score =  210 bits (535), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 107/176 (60%), Positives = 127/176 (72%), Gaps = 2/176 (1%)
Query: 6   LRKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATXXXXXXXXXXXXXXX 65
           L+++GY A FIGIG P      IFQGLT++ GFYTSK FLP VA                
Sbjct: 271 LKEEGYKAAFIGIGLPEPKTDDIFQGLTQDQGFYTSKDFLPLVA--KSSKAGMCACHSPL 328
Query: 66  PILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFL 125
           P ++G VIVLGAGDTAFDCATSALRCGA +V +VFRKG  NIRAVPEEV+LA EEKCEFL
Sbjct: 329 PSIRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFVNIRAVPEEVELAKEEKCEFL 388
Query: 126 PFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLD 181
           PF+SP +V VK  +I  +QF RTEQ+E G+W EDE+Q + LKA+ +ISAFGS L D
Sbjct: 389 PFLSPRKVIVKGGRIVAVQFVRTEQDETGKWNEDEDQIVHLKADVVISAFGSVLRD 444

>pdb|1H7W|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig Length = 1025

Iteration: 1
 Score =  210 bits (535), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 107/176 (60%), Positives = 127/176 (72%), Gaps = 2/176 (1%)
Query: 6   LRKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATXXXXXXXXXXXXXXX 65
           L+++GY A FIGIG P      IFQGLT++ GFYTSK FLP VA                
Sbjct: 271 LKEEGYKAAFIGIGLPEPKTDDIFQGLTQDQGFYTSKDFLPLVA--KSSKAGMCACHSPL 328
Query: 66  PILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFL 125
           P ++G VIVLGAGDTAFDCATSALRCGA +V +VFRKG  NIRAVPEEV+LA EEKCEFL
Sbjct: 329 PSIRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFVNIRAVPEEVELAKEEKCEFL 388
Query: 126 PFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLD 181
           PF+SP +V VK  +I  +QF RTEQ+E G+W EDE+Q + LKA+ +ISAFGS L D
Sbjct: 389 PFLSPRKVIVKGGRIVAVQFVRTEQDETGKWNEDEDQIVHLKADVVISAFGSVLRD 444

>pdb|2VDC|G Chain G, The 9.5 A Resolution Structure Of Glutamate Synthase From Cryo-Electron Microscopy And Its Oligomerization Behavior In Solution: Functional Implications. Length = 456

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 34/59 (57%)
Query: 72  VIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFMSP 130
           V+VLG GDTA DC  +A+R GA  V  ++R+   N+     EV  A EE  EF+   +P
Sbjct: 267 VVVLGGGDTAMDCVRTAIRQGATSVKCLYRRDRKNMPGSQREVAHAEEEGVEFIWQAAP 325

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	183
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	7e-61
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	4e-13
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	1e-04
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	3e-04

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* Length = 1025

 Score =  202 bits (515), Expect = 7e-61
 Identities = 112/174 (64%), Positives = 133/174 (76%), Gaps = 2/174 (1%)

Query: 6   LRKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESL 65
           L+++GY A FIGIG P      IFQGLT++ GFYTSK FLP VA SSK G+C       L
Sbjct: 271 LKEEGYKAAFIGIGLPEPKTDDIFQGLTQDQGFYTSKDFLPLVAKSSKAGMCA--CHSPL 328

Query: 66  PILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFL 125
           P ++G VIVLGAGDTAFDCATSALRCGA +V +VFRKG  NIRAVPEEV+LA EEKCEFL
Sbjct: 329 PSIRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFVNIRAVPEEVELAKEEKCEFL 388

Query: 126 PFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTL 179
           PF+SP +V VK  +I  +QF RTEQ+E G+W EDE+Q + LKA+ +ISAFGS L
Sbjct: 389 PFLSPRKVIVKGGRIVAVQFVRTEQDETGKWNEDEDQIVHLKADVVISAFGSVL 442

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense} Length = 456

 Score = 65.2 bits (160), Expect = 4e-13
 Identities = 44/183 (24%), Positives = 71/183 (38%), Gaps = 21/183 (11%)

Query: 5   KLRKDGYTAIFIGIG--KPNANVIPIFQGLTEEM-GFYTSKTFLPRVATSSKKGLCGGCK 61
           +LR+  + A+ +  G  K      P   G    +     +  +L   +     G      
Sbjct: 203 ELRRK-HVAVLVATGVYKARDIKAP---G--SGLGNIVAALDYLTT-SNKVSLGDTVEAY 255

Query: 62  KESLPILKG-TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEE 120
           +       G  V+VLG GDTA DC  +A+R GA  V  ++R+   N+     EV  A EE
Sbjct: 256 ENGSLNAAGKHVVVLGGGDTAMDCVRTAIRQGATSVKCLYRRDRKNMPGSQREVAHAEEE 315

Query: 121 KCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEW-------VEDEEQRIKLKANYIIS 173
             EF+   +P      D  + G++  R                +E  E  +  +A+ +I 
Sbjct: 316 GVEFIWQAAPEGF-TGDTVVTGVRAVRIHLGVADATGRQTPQVIEGSEFTV--QADLVIK 372

Query: 174 AFG 176
           A G
Sbjct: 373 ALG 375

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum} Length = 360

 Score = 40.7 bits (96), Expect = 1e-04
 Identities = 13/110 (11%), Positives = 36/110 (32%), Gaps = 18/110 (16%)

Query: 71  TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEV----QLAWEEKCEFLP 126
            V+++G GD+A D     L   A  V +V R      +   +      +       +   
Sbjct: 165 RVVIVGGGDSALDWTV-GLIKNAASVTLVHRG--HEFQGHGKTAHEVERARANGTIDVYL 221

Query: 127 FMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFG 176
                 ++  +  +  +    ++ ++             ++A+ ++   G
Sbjct: 222 ETEVASIEESNGVLTRVHLRSSDGSKW-----------TVEADRLLILIG 260

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A* Length = 332

 Score = 39.1 bits (92), Expect = 3e-04
 Identities = 24/106 (22%), Positives = 43/106 (40%), Gaps = 14/106 (13%)

Query: 71  TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFMSP 130
            V +LG GD+A D A   L   A +V ++ R+     RA    V+     K   L    P
Sbjct: 156 RVAILGGGDSAVDWAL-MLEPIAKEVSIIHRR--DKFRAHEHSVENLHASKVNVLTPFVP 212

Query: 131 VQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFG 176
            ++ + ++KI  +     + + K            L+ + +I  +G
Sbjct: 213 AEL-IGEDKIEQLVLEEVKGDRK----------EILEIDDLIVNYG 247

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	183
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	99.92
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	99.91
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	99.83
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	99.81
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	99.81
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	99.8
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	99.77
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	99.77
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	99.77
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	99.77
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	99.76
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	99.76
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	99.76
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	99.76
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	99.76
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	99.76
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	99.76
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	99.75
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	99.75
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	99.75
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	99.75
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	99.75
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	99.75
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	99.74
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	99.74
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	99.74
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	99.73
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	99.73
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	99.73
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	99.73
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	99.73
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	99.73
1fec_A	490	Trypanothione reductase; redox-active center, oxid	99.73
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	99.73
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	99.73
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	99.73
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	99.73
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	99.73
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	99.73
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	99.72
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	99.72
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	99.72
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	99.72
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	99.72
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	99.72
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	99.72
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	99.72
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	99.71
3r9u_A	315	Thioredoxin reductase; structural genomics, center	99.71
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	99.71
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	99.71
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	99.71
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	99.71
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	99.71
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	99.7
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	99.7
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	99.7
1ojt_A	482	Surface protein; redox-active center, glycolysis,	99.69
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	99.69
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	99.69
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	99.69
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	99.68
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	99.68
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	99.68
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	99.67
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	99.67
4dna_A	463	Probable glutathione reductase; structural genomic	99.67
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	99.67
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	99.67
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	99.65
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	99.65
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	99.65
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	99.64
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	99.64
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	99.61
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	99.59
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	99.59
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	99.53
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	99.53
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	99.48
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	99.47
4fk1_A	304	Putative thioredoxin reductase; structural genomic	99.46
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	99.4
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	99.39
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	99.36
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	99.35
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	99.29
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	99.21
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	99.2
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	99.14
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	99.08
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	99.0
2bry_A	497	NEDD9 interacting protein with calponin homology a	98.95
2cul_A	232	Glucose-inhibited division protein A-related PROT	98.88
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	98.82
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	98.81
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	98.76
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	98.7
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	98.66
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	98.64
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	98.64
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	98.62
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	98.6
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	98.6
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	98.59
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	98.57
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	98.57
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	98.54
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	98.54
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	98.54
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	98.54
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	98.54
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	98.53
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	98.52
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	98.51
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	98.51
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	98.5
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	98.49
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	98.49
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	98.48
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	98.47
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	98.46
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	98.46
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	98.45
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	98.45
3atr_A	453	Conserved archaeal protein; saturating double bond	98.45
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	98.44
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	98.43
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	98.43
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	98.42
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	98.39
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	98.39
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	98.38
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	98.38
4fk1_A	304	Putative thioredoxin reductase; structural genomic	98.38
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	98.37
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	98.37
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	98.37
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	98.37
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	98.36
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	98.35
3r9u_A	315	Thioredoxin reductase; structural genomics, center	98.35
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	98.35
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	98.35
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	98.34
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	98.33
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	98.33
3dme_A	369	Conserved exported protein; structural genomics, P	98.32
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	98.3
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	98.3
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	98.29
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	98.29
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	98.28
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	98.28
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	98.27
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	98.26
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	98.26
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	98.24
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	98.24
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	98.23
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	98.22
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	98.21
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	98.21
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	98.2
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	98.17
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	98.16
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	98.16
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	98.14
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	98.14
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	98.14
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	98.13
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	98.12
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	98.11
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	98.11
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	98.1
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	98.09
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	98.09
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	98.09
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	98.08
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	98.07
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	98.06
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	98.05
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	98.05
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	98.04
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	98.04
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	98.03
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	98.02
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	98.02
4hb9_A	412	Similarities with probable monooxygenase; flavin,	98.01
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	98.01
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	97.99
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	97.98
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	97.98
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	97.97
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	97.96
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	97.96
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	97.95
1ojt_A	482	Surface protein; redox-active center, glycolysis,	97.95
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	97.94
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	97.93
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	97.93
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	97.92
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	97.92
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	97.91
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	97.9
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	97.89
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	97.88
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	97.87
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	97.87
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	97.86
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	97.86
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	97.85
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	97.85
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	97.83
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	97.81
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	97.8
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	97.77
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	97.76
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	97.76
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	97.76
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	97.74
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	97.74
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	97.73
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	97.71
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	97.71
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	97.7
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	97.68
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	97.67
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	97.65
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	97.64
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	97.63
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	97.58
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	97.58
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	97.57
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	97.56
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	97.56
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	97.54
1fec_A	490	Trypanothione reductase; redox-active center, oxid	97.53
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	97.53
4dna_A	463	Probable glutathione reductase; structural genomic	97.53
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	97.52
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	97.51
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	97.47
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	97.47
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	97.46
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	97.36
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	97.31
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	97.25
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	97.15
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	97.07
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	96.91
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	96.91
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	96.85
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	96.84
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	96.83
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	96.79
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	96.77
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	96.75
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	96.71
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	96.63
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	96.62
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	96.59
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	96.57
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	96.56
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	96.52
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	96.49
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	96.46
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	96.45
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	96.42
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	96.4
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	96.38
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	96.36
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	96.33
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	96.29
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	96.26
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	96.26
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	96.26
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	96.25
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	96.2
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	96.18
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	96.18
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	96.18
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	96.14
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	96.12
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	96.11
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	96.1
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	96.07
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	96.06
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	96.01
1id1_A	153	Putative potassium channel protein; RCK domain, E.	96.0
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	95.94
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	95.92
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	95.9
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	95.88
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	95.87
4hv4_A	494	UDP-N-acetylmuramate--L-alanine ligase; MURC, yers	95.84
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	95.72
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	95.65
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	95.6
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	95.56
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	95.49
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	95.48
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	95.47
3c85_A	183	Putative glutathione-regulated potassium-efflux S	95.35
3hn7_A	524	UDP-N-acetylmuramate-L-alanine ligase; ATP-binding	95.21
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	95.08
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	94.99
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	94.93
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	94.81
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	94.81
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	94.71
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	94.71
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	94.65
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	94.62
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	94.62
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	94.6
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	94.53
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	94.47
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	94.43
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	94.42
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	94.42
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	94.39
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	94.36
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	94.34
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	94.31
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	94.3
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	94.27
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	94.25
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	94.2
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	94.18
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	94.18
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	94.16
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	94.13
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	94.11
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	94.1
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	94.1
3l07_A	285	Bifunctional protein fold; structural genomics, ID	94.09
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	94.06
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	94.01
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	94.0
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	93.98
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	93.96
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	93.95
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	93.91
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	93.89
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	93.89
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	93.87
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	93.87
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	93.7
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	93.69
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	93.68
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	93.67
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	93.67
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	93.67
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	93.6
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	93.57
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	93.54
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	93.5
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	93.47
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	93.46
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	93.46
1y8q_A	346	Ubiquitin-like 1 activating enzyme E1A; SUMO, hete	93.4
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	93.39
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	93.38
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	93.37
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	93.36
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	93.36
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	93.34
1tt5_B	434	Ubiquitin-activating enzyme E1C isoform 1; cell cy	93.31
4gsl_A	615	Ubiquitin-like modifier-activating enzyme ATG7; ub	93.27
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	93.24
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	93.21
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	93.16
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	93.15
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	93.13
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	93.12
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	93.09
1u7z_A	226	Coenzyme A biosynthesis bifunctional protein coabc	93.07
1y8q_B	640	Anthracycline-, ubiquitin-like 2 activating enzyme	93.04
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	93.03
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	93.03
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	93.03
3vh1_A	598	Ubiquitin-like modifier-activating enzyme ATG7; au	93.01
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	92.97
2c2x_A	281	Methylenetetrahydrofolate dehydrogenase- methenylt	92.95
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	92.94
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	92.94
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	92.91
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	92.88
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	92.86
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	92.75
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	92.72
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	92.68
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	92.57
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	92.55
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	92.46
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	92.46
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	92.45
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	92.45
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	92.44
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	92.42
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	92.4
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	92.33
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	92.31
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	92.3
1o5i_A	249	3-oxoacyl-(acyl carrier protein) reductase; TM1169	92.29
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	92.25
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	92.25
1rpn_A	335	GDP-mannose 4,6-dehydratase; short-chain dehydroge	92.24
2gk4_A	232	Conserved hypothetical protein; alpha-beta-alpha s	92.23
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	92.19
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	92.18
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	92.09
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	92.06
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	92.04
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	92.0
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	92.0
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	91.99
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	91.97
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	91.96
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	91.93
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	91.92
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	91.91
1tt5_A	531	APPBP1, amyloid protein-binding protein 1; cell cy	91.89
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	91.88
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	91.86
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	91.84
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	91.8
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	91.79
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	91.76
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	91.72
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	91.71
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	91.69
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	91.67
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	91.64
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	91.59
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	91.58
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	91.56
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	91.54
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	91.54
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	91.51
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	91.41
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	91.41
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	91.37
3ko8_A	312	NAD-dependent epimerase/dehydratase; isomerase, UD	91.36
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	91.35
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	91.35
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	91.34
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	91.32
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	91.32
2wyu_A	261	Enoyl-[acyl carrier protein] reductase; oxidoreduc	91.29
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	91.24
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	91.24
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	91.21
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	91.21
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	91.2
1n7h_A	381	GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR,	91.17
4h15_A	261	Short chain alcohol dehydrogenase-related dehydro;	91.08
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	91.08
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	91.02
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	91.0
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	90.99
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	90.99
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	90.98
2nvu_B	805	Maltose binding protein/NEDD8-activating enzyme E1	90.95
3orq_A	377	N5-carboxyaminoimidazole ribonucleotide synthetas;	90.88
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	90.84
2dvm_A	439	Malic enzyme, 439AA long hypothetical malate oxido	90.84
3mje_A	496	AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.	90.84
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	90.8
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	90.8
1ek6_A	348	UDP-galactose 4-epimerase; short-chain dehydrogena	90.74
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	90.73
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	90.7
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	90.69
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	90.65
1qsg_A	265	Enoyl-[acyl-carrier-protein] reductase; enoyl redu	90.64
2p91_A	285	Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD	90.6
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	90.57
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	90.55
4ezb_A	317	Uncharacterized conserved protein; structural geno	90.52
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	90.52
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	90.47
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	90.46
2h7i_A	269	Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi	90.45
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	90.43
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	90.43
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	90.4
3tl2_A	315	Malate dehydrogenase; center for structural genomi	90.36
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	90.33
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	90.32
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	90.32
2cfc_A	250	2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor	90.31
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	90.31
3qha_A	296	Putative oxidoreductase; seattle structural genomi	90.27
4e4t_A	419	Phosphoribosylaminoimidazole carboxylase, ATPase;	90.26
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	90.26
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	90.25
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	90.24
1p3d_A	475	UDP-N-acetylmuramate--alanine ligase; alpha/beta p	90.24

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=99.92  E-value=5.6e-24  Score=195.97  Aligned_cols=177  Identities=64%  Similarity=1.055  Sum_probs=137.5

Q ss_pred             ChhhhhhCCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhH
Q psy16200          2 PTLKLRKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTA   81 (183)
Q Consensus         2 ~~~~l~~~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g   81 (183)
                      +++++.+..||+||||||++.|+.+++++|+.+.++|+++.+||...++..+.++| .++. ..+..+++|+|||||++|
T Consensus       267 ~~~~~~~~~~d~vvlAtGa~~p~~l~~~~G~~~~~gv~~a~~~L~~~~~~~~~~~~-~~~~-~~~~~~~~VvVIGgG~~g  344 (1025)
T 1gte_A          267 TLNTLKEEGYKAAFIGIGLPEPKTDDIFQGLTQDQGFYTSKDFLPLVAKSSKAGMC-ACHS-PLPSIRGAVIVLGAGDTA  344 (1025)
T ss_dssp             CHHHHHHTTCCEEEECCCCCEECCCGGGTTCCTTTTEEEHHHHHHHHHHHHCBTTB-SCCC-CCCCCCSEEEEECSSHHH
T ss_pred             EhhhcCccCCCEEEEecCCCCCCCCCCCCCCCCCCCEEEhHHHHHHHHhhcccccc-cccc-cccccCCcEEEECCChHH
Confidence            45666677899999999985587777642544457899999999865442121111 1111 123456789999999999


Q ss_pred             HHHHHHHHHcCCceEEEEEeecCCcCCCCHHHHHHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCC
Q psy16200         82 FDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEE  161 (183)
Q Consensus        82 ~e~A~~l~~~G~~~V~lv~r~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g  161 (183)
                      +|+|..+.++|+++|++++|++...++..+.++..+.++||+|+++..+.++..++++++++++.+++.+++|++...+|
T Consensus       345 ~e~A~~~~~~G~~~Vtvv~r~~~~~~~~~~~e~~~~~~~Gv~~~~~~~~~~i~~~~g~v~~v~~~~~~~~~~g~~~~~~g  424 (1025)
T 1gte_A          345 FDCATSALRCGARRVFLVFRKGFVNIRAVPEEVELAKEEKCEFLPFLSPRKVIVKGGRIVAVQFVRTEQDETGKWNEDED  424 (1025)
T ss_dssp             HHHHHHHHHTTCSEEEEECSSCGGGCCSCHHHHHHHHHTTCEEECSEEEEEEEEETTEEEEEEEEEEEECTTSCEEEEEE
T ss_pred             HHHHHHHHHcCCCEEEEEEecChhhCCCCHHHHHHHHHcCCEEEeCCCceEEEccCCeEEEEEEEEeEEcCCCCcccCCC
Confidence            99999999999868999999886668888888888899999999999999998666788888887776667776655566


Q ss_pred             ceEEEECCEEEEccccccc
Q psy16200        162 QRIKLKANYIISAFGSTLL  180 (183)
Q Consensus       162 ~~~~i~~D~Vi~a~G~~p~  180 (183)
                      ++.++++|+||+|+|++|+
T Consensus       425 ~~~~i~aD~Vi~A~G~~~~  443 (1025)
T 1gte_A          425 QIVHLKADVVISAFGSVLR  443 (1025)
T ss_dssp             EEEEEECSEEEECSCEECC
T ss_pred             ceEEEECCEEEECCCCCCC
Confidence            6778999999999999875

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=99.91  E-value=5.8e-24  Score=180.87  Aligned_cols=174  Identities=27%  Similarity=0.325  Sum_probs=130.1

Q ss_pred             ChhhhhhCCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCc--cCCCCCCCCCCCcceEEEEcCCh
Q psy16200          2 PTLKLRKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGL--CGGCKKESLPILKGTVIVLGAGD   79 (183)
Q Consensus         2 ~~~~l~~~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~VvViGgG~   79 (183)
                      +.+++. ..||+||||||++.|+.+++| | .+.++|+++.+|+...+... .+.  +..+++ .....+++|+|||||+
T Consensus       200 ~~~~~~-~~~d~vvlAtG~~~~~~~~ip-G-~~~~gv~~a~~~l~~~~~~~-~~~~~~~~~~g-~~~~~gk~VvVIGgG~  274 (456)
T 2vdc_G          200 SLPELR-RKHVAVLVATGVYKARDIKAP-G-SGLGNIVAALDYLTTSNKVS-LGDTVEAYENG-SLNAAGKHVVVLGGGD  274 (456)
T ss_dssp             CHHHHH-SSCSEEEECCCCCEECCTTCS-C-CTTTTEEEHHHHHHHHHHHH-CTTTCSSCCTT-CSCCCCSEEEEECSSH
T ss_pred             EhhHhH-hhCCEEEEecCCCCCCCCCCC-C-CcCCCcEEHHHHHHHhhhhh-ccccccccccc-ccccCCCEEEEECCCh
Confidence            445554 459999999999657788999 5 67889999999987653210 000  000000 0113457799999999


Q ss_pred             hHHHHHHHHHHcCCceEEEEEeecCCcCCCCHHHHHHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeee---cCCCCe
Q psy16200         80 TAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQ---NEKGEW  156 (183)
Q Consensus        80 ~g~e~A~~l~~~G~~~V~lv~r~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~---~~~~~~  156 (183)
                      +|+|+|..+.++|+++|++++|++...||....++..+.++||+|++++.+.++.+ +++++++++.++++   +.+|++
T Consensus       275 ~a~d~A~~~~r~Ga~~Vtiv~r~~~~~~p~~~~e~~~~~~~Gv~~~~~~~~~~i~~-~g~v~~v~~~~~~~~~~d~~G~~  353 (456)
T 2vdc_G          275 TAMDCVRTAIRQGATSVKCLYRRDRKNMPGSQREVAHAEEEGVEFIWQAAPEGFTG-DTVVTGVRAVRIHLGVADATGRQ  353 (456)
T ss_dssp             HHHHHHHHHHHTTCSEEEEECSSCSTTCSSCHHHHHHHHHTTCEEECCSSSCCEEE-EEEEETTEEEEEEEEEEEECTTC
T ss_pred             hHHHHHHHHHHcCCCEEEEEEeCCccCCCCCHHHHHHHHHCCCEEEeCCCceEEeC-CCcEEEEEEEEEEecccCCcCCc
Confidence            99999999999998779999999876688888888888999999999999999975 45666666665443   344544


Q ss_pred             e--cCCCceEEEECCEEEEcccccccC
Q psy16200        157 V--EDEEQRIKLKANYIISAFGSTLLD  181 (183)
Q Consensus       157 ~--~~~g~~~~i~~D~Vi~a~G~~p~~  181 (183)
                      .  ..+|++.+++||+||+|+|+.||+
T Consensus       354 ~~~~~~g~~~~i~aD~Vi~A~G~~p~~  380 (456)
T 2vdc_G          354 TPQVIEGSEFTVQADLVIKALGFEPED  380 (456)
T ss_dssp             CEEEEEEEEEEEECSEEEECSCEECCC
T ss_pred             cccccCCcEEEEECCEEEECCCCCCCc
Confidence            2  235667899999999999999985

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=99.83  E-value=1.5e-19  Score=153.86  Aligned_cols=168  Identities=22%  Similarity=0.297  Sum_probs=114.9

Q ss_pred             hhhhhhCCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCC-CC-CcceEEEEcCChh
Q psy16200          3 TLKLRKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESL-PI-LKGTVIVLGAGDT   80 (183)
Q Consensus         3 ~~~l~~~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~-~~~~VvViGgG~~   80 (183)
                      .+++. ..||+||||||+..++.|++| | .+.++++++.+++.+.+....      +.  .. .. .+++|+|||||++
T Consensus        88 ~~~~~-~~~d~lVlAtGs~~~~~~~ip-G-~~~~gv~~~~~~~~~~~~~~d------~~--~~~~~~~~~~vvVIGgG~~  156 (460)
T 1cjc_A           88 VQELQ-DAYHAVVLSYGAEDHQALDIP-G-EELPGVFSARAFVGWYNGLPE------NR--ELAPDLSCDTAVILGQGNV  156 (460)
T ss_dssp             HHHHH-HHSSEEEECCCCCEECCCCCT-T-TTSTTEEEHHHHHHHHTTCGG------GT--TCCCCTTSSEEEEESCSHH
T ss_pred             eccce-EEcCEEEEecCcCCCCCCCCC-C-CCCCcEEEHHHHHHHhhcCcc------cc--ccccCCCCCEEEEECCCHH
Confidence            34433 369999999999634778999 5 678899999998876542100      00  11 12 3567999999999


Q ss_pred             HHHHHHHHH--------------------HcCCceEEEEEeecCCcCCCCHH----------------------------
Q psy16200         81 AFDCATSAL--------------------RCGANKVLVVFRKGCTNIRAVPE----------------------------  112 (183)
Q Consensus        81 g~e~A~~l~--------------------~~G~~~V~lv~r~~~~~~~~~~~----------------------------  112 (183)
                      |+|+|..|+                    +.|+++|++++|++..+++....                            
T Consensus       157 g~e~A~~L~~~~~~l~~tdi~~~a~~~l~~~g~~~V~lv~r~~~~~~~ft~~el~~l~~lp~~~~~~~~~~~~~~~~~~~  236 (460)
T 1cjc_A          157 ALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGPLQVAFTIKELREMIQLPGTRPMLDPADFLGLQDRIK  236 (460)
T ss_dssp             HHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCGGGCCCCHHHHHHHHTCTTEEEECCGGGGTTHHHHTT
T ss_pred             HHHHHHHHhhchhhhccccccHHHHHHHhhCCCcEEEEEEcCChHhhccCHHHHHHhhcCCCceeEechhhhcchhhhhh
Confidence            999999998                    67877899999987542211110                            


Q ss_pred             -----------HH-HHHHH--------------cCcEEEeCCcceEEEccC-C-cEEEEEEEEeeecCC-C-CeecCCCc
Q psy16200        113 -----------EV-QLAWE--------------EKCEFLPFMSPVQVDVKD-N-KIAGMQFNRTEQNEK-G-EWVEDEEQ  162 (183)
Q Consensus       113 -----------~~-~~~~~--------------~gv~~~~~~~~~~i~~~~-~-~v~~v~~~~~~~~~~-~-~~~~~~g~  162 (183)
                                 .+ ..+.+              .||.|+++..+.++..++ + +++++++.+++++.. + .....+|+
T Consensus       237 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~v~~v~~~~~~l~~~~~~~~~~~~g~  316 (460)
T 1cjc_A          237 EAARPRKRLMELLLRTATEKPGVEEAARRASASRAWGLRFFRSPQQVLPSPDGRRAAGIRLAVTRLEGIGEATRAVPTGD  316 (460)
T ss_dssp             TSCHHHHHHHHHHHHHHHSCCCHHHHHHHHTCSEEEEEECSEEEEEEEECTTSSSEEEEEEEEEEEESSGGGCEEEEEEE
T ss_pred             hccHHHHHHHHHHHHHHHhccccccccCCCCCCceEEEECCCChheEEcCCCCceEEEEEEEEEEEccccCCCcccCCCc
Confidence                       01 11233              789999999999998643 5 788888765443210 0 00112455


Q ss_pred             eEEEECCEEEEcccccccC
Q psy16200        163 RIKLKANYIISAFGSTLLD  181 (183)
Q Consensus       163 ~~~i~~D~Vi~a~G~~p~~  181 (183)
                      ..+++||.||+|+|++|++
T Consensus       317 ~~~i~~d~Vi~a~G~~p~~  335 (460)
T 1cjc_A          317 VEDLPCGLVLSSIGYKSRP  335 (460)
T ss_dssp             EEEEECSEEEECCCEECCC
T ss_pred             eEEEEcCEEEECCCCCCCC
Confidence            5789999999999999986

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=99.81  E-value=2.2e-19  Score=152.63  Aligned_cols=168  Identities=21%  Similarity=0.304  Sum_probs=114.1

Q ss_pred             hhhhhhCCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCC-CcceEEEEcCChhH
Q psy16200          3 TLKLRKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPI-LKGTVIVLGAGDTA   81 (183)
Q Consensus         3 ~~~l~~~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~VvViGgG~~g   81 (183)
                      .++. ...||+||||||+..|+.+++| | .++++++++.+++.+++....   |. +   .... .+++|+|||+|++|
T Consensus        90 ~~~~-~~~~d~lViAtG~~~~~~~~ip-G-~~~~gv~~~~~~~~~~~~~~d---~~-~---~~~~~~~~~vvVIG~G~~g  159 (456)
T 1lqt_A           90 PGEL-SERYDAVIYAVGAQSDRMLNIP-G-EDLPGSIAAVDFVGWYNAHPH---FE-Q---VSPDLSGARAVVIGNGNVA  159 (456)
T ss_dssp             HHHH-HHHSSEEEECCCCCEECCCCCT-T-TTSTTEEEHHHHHHHHTTCGG---GT-T---CCCCCCSSEEEEECCSHHH
T ss_pred             ECCC-eEeCCEEEEeeCCCCCCCCCCC-C-CCCCCcEEHHHHHhhhhcCcc---cc-c---chhhcCCCEEEEECCCHHH
Confidence            3444 2469999999999546788999 5 578899999998876542100   00 0   1112 35679999999999


Q ss_pred             HHHHHHHHHc--------------------CCceEEEEEeecCCcCCCCHH-----------------------------
Q psy16200         82 FDCATSALRC--------------------GANKVLVVFRKGCTNIRAVPE-----------------------------  112 (183)
Q Consensus        82 ~e~A~~l~~~--------------------G~~~V~lv~r~~~~~~~~~~~-----------------------------  112 (183)
                      +|+|..|++.                    |.++|++++|++..+......                             
T Consensus       160 ~e~A~~L~~~~~~l~~tdi~~~~~~~l~~~g~~~V~lv~r~~~~~~~f~~~elrel~~lp~~~~~~~~~~~~~~~~~~~~  239 (456)
T 1lqt_A          160 LDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPLQAAFTTLELRELADLDGVDVVIDPAELDGITDEDAA  239 (456)
T ss_dssp             HHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCGGGCCCCHHHHHHGGGCTTEEEECCGGGGTTCCHHHHH
T ss_pred             HHHHHHHHhhhhhhcCCCccHHHHHHHHHCCCcEEEEEecCChhhhccChHHHHHhhcCCCceeeeChHHhccchhhhhh
Confidence            9999999874                    666899999987532211110                             


Q ss_pred             -----------HHH-HHHH------cCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCC--Ce-ecCCCceEEEECCEE
Q psy16200        113 -----------EVQ-LAWE------EKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKG--EW-VEDEEQRIKLKANYI  171 (183)
Q Consensus       113 -----------~~~-~~~~------~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~--~~-~~~~g~~~~i~~D~V  171 (183)
                                 .+. .+.+      +||.|++++.+.++.++ ++++++++.+++++.++  .. ...+|+..+++||+|
T Consensus       240 ~~~~~~~~~~~~l~~~~~~~~~~~~~gv~i~~~~~~~~i~~~-~~v~~v~~~~~~~~~~~~~~~~~~~~g~~~~i~~d~v  318 (456)
T 1lqt_A          240 AVGKVCKQNIKVLRGYADREPRPGHRRMVFRFLTSPIEIKGK-RKVERIVLGRNELVSDGSGRVAAKDTGEREELPAQLV  318 (456)
T ss_dssp             HHCHHHHHHHHHHHHHHTCC-CTTSEEEEEECSEEEEEEECS-SSCCEEEEEEEEEEECSSSSEEEEEEEEEEEEECSEE
T ss_pred             hccHHHHHHHHHHHHHhhcCCCCCCceEEEEeCCCCeEEecC-CcEeEEEEEEEEecCCCcccccccCCCceEEEEcCEE
Confidence                       111 1223      68999999999999864 56666777654432222  11 112455578999999


Q ss_pred             EEcccccccC
Q psy16200        172 ISAFGSTLLD  181 (183)
Q Consensus       172 i~a~G~~p~~  181 (183)
                      |+|+|++|++
T Consensus       319 i~a~G~~p~~  328 (456)
T 1lqt_A          319 VRSVGYRGVP  328 (456)
T ss_dssp             EECSCEECCC
T ss_pred             EEccccccCC
Confidence            9999999985

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=99.81  E-value=1e-19  Score=157.65  Aligned_cols=133  Identities=20%  Similarity=0.205  Sum_probs=101.9

Q ss_pred             CCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHHHH
Q psy16200         10 GYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSAL   89 (183)
Q Consensus        10 ~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~l~   89 (183)
                      .+|.+|||||++ |+.|+.++  .+...++++.++|.                  +..+|++++|||||++|+|+|..++
T Consensus       185 ~a~~iiIATGs~-P~~P~~~~--~~~~~~~ts~~~l~------------------l~~lP~~lvIIGgG~IGlE~A~~~~  243 (542)
T 4b1b_A          185 TGKYILIATGCR-PHIPDDVE--GAKELSITSDDIFS------------------LKKDPGKTLVVGASYVALECSGFLN  243 (542)
T ss_dssp             EEEEEEECCCEE-ECCCSSSB--THHHHCBCHHHHTT------------------CSSCCCSEEEECCSHHHHHHHHHHH
T ss_pred             eeeeEEeccCCC-CCCCCccc--CCCccccCchhhhc------------------cccCCceEEEECCCHHHHHHHHHHH
Confidence            478999999994 88776653  23445677777763                  3467899999999999999999999


Q ss_pred             HcCCceEEEEEeecCCcCCCCHHHHH-----HHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCceE
Q psy16200         90 RCGANKVLVVFRKGCTNIRAVPEEVQ-----LAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRI  164 (183)
Q Consensus        90 ~~G~~~V~lv~r~~~~~~~~~~~~~~-----~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~  164 (183)
                      ++|. +||+++|+ + .++..++++.     .+.++||.++++..+.++...++.+. +++             .++  .
T Consensus       244 ~lG~-~VTii~~~-~-~L~~~D~ei~~~l~~~l~~~gi~~~~~~~v~~~~~~~~~~~-v~~-------------~~~--~  304 (542)
T 4b1b_A          244 SLGY-DVTVAVRS-I-VLRGFDQQCAVKVKLYMEEQGVMFKNGILPKKLTKMDDKIL-VEF-------------SDK--T  304 (542)
T ss_dssp             HHTC-CEEEEESS-C-SSTTSCHHHHHHHHHHHHHTTCEEEETCCEEEEEEETTEEE-EEE-------------TTS--C
T ss_pred             hcCC-eEEEeccc-c-cccccchhHHHHHHHHHHhhcceeecceEEEEEEecCCeEE-EEE-------------cCC--C
Confidence            9998 69999875 3 3666655542     35788999999999999886555543 333             122  2


Q ss_pred             EEECCEEEEcccccccCC
Q psy16200        165 KLKANYIISAFGSTLLDN  182 (183)
Q Consensus       165 ~i~~D~Vi~a~G~~p~~~  182 (183)
                      ++.+|.|++|+|++||++
T Consensus       305 ~~~~D~vLvAvGR~Pnt~  322 (542)
T 4b1b_A          305 SELYDTVLYAIGRKGDID  322 (542)
T ss_dssp             EEEESEEEECSCEEESCG
T ss_pred             eEEEEEEEEcccccCCcc
Confidence            567999999999999986

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=99.80  E-value=1.2e-19  Score=145.49  Aligned_cols=145  Identities=14%  Similarity=0.164  Sum_probs=101.3

Q ss_pred             hCCCCEEEEccCCCCCcccCCCCCCccCCCc--eehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHH
Q psy16200          8 KDGYTAIFIGIGKPNANVIPIFQGLTEEMGF--YTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCA   85 (183)
Q Consensus         8 ~~~~davviATGa~~p~~l~i~gg~~~~~~V--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A   85 (183)
                      +..||++|||||+ .|+.|++| | .+....  .....+....               .....+++|+|||||++|+|+|
T Consensus       107 ~~~~~~liiATG~-~~~~~~ip-G-~~~~~~~~~~~~~~~~~~---------------~~~~~~~~vvViGgG~ig~e~A  168 (314)
T 4a5l_A          107 EVLTKSVIIATGA-TAKRMHVP-G-EDKYWQNGVSACAICDGA---------------VPIFRNKVLMVVGGGDAAMEEA  168 (314)
T ss_dssp             EEEEEEEEECCCE-EECCCCCT-T-HHHHBTTTEESCHHHHTT---------------SGGGTTSEEEEECSSHHHHHHH
T ss_pred             EEEEeEEEEcccc-cccccCCC-c-cccccccceeeehhhhhh---------------hhhcCCCeEEEECCChHHHHHH
Confidence            3468999999999 49999999 5 443221  1111221110               1122356799999999999999


Q ss_pred             HHHHHcCCceEEEEEeecCCcCCCCHHHHHHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCceEE
Q psy16200         86 TSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIK  165 (183)
Q Consensus        86 ~~l~~~G~~~V~lv~r~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~  165 (183)
                      ..|+++|+ +|++++|+... ..............++.++......++...+....++++...          ..+..++
T Consensus       169 ~~l~~~G~-~Vt~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~----------~~~~~~~  236 (314)
T 4a5l_A          169 LHLTKYGS-KVIILHRRDAF-RASKTMQERVLNHPKIEVIWNSELVELEGDGDLLNGAKIHNL----------VSGEYKV  236 (314)
T ss_dssp             HHHTTTSS-EEEEECSSSSC-CSCHHHHHHHHTCTTEEEECSEEEEEEEESSSSEEEEEEEET----------TTCCEEE
T ss_pred             HHHHHhCC-eeeeecccccc-cccchhhhhhhcccceeeEeeeeeEEEEeeeeccceeEEeec----------cccccee
Confidence            99999997 79999987543 222222223345667888888888888765566666666432          3456779


Q ss_pred             EECCEEEEcccccccCC
Q psy16200        166 LKANYIISAFGSTLLDN  182 (183)
Q Consensus       166 i~~D~Vi~a~G~~p~~~  182 (183)
                      ++||.|++|+|++||++
T Consensus       237 i~~d~vi~a~G~~pn~~  253 (314)
T 4a5l_A          237 VPVAGLFYAIGHSPNSK  253 (314)
T ss_dssp             EECSEEEECSCEEESCG
T ss_pred             eccccceEecccccChh
Confidence            99999999999999975

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=99.77  E-value=4.1e-18  Score=144.70  Aligned_cols=139  Identities=19%  Similarity=0.253  Sum_probs=104.7

Q ss_pred             CCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHHH
Q psy16200          9 DGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSA   88 (183)
Q Consensus         9 ~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~l   88 (183)
                      ..||++|+|||+ .|+.|+++ | .+.++++++.+++.                  ....+++|+|||||++|+|+|..|
T Consensus       135 ~~~d~lviAtG~-~p~~p~~~-g-~~~~~v~t~~~~~~------------------~~~~~~~vvViGgG~~g~E~A~~l  193 (468)
T 2qae_A          135 LETKKTIIATGS-EPTELPFL-P-FDEKVVLSSTGALA------------------LPRVPKTMVVIGGGVIGLELGSVW  193 (468)
T ss_dssp             EEEEEEEECCCE-EECCBTTB-C-CCSSSEECHHHHHT------------------CSSCCSEEEEECCSHHHHHHHHHH
T ss_pred             EEcCEEEECCCC-CcCCCCCC-C-CCcCceechHHHhh------------------cccCCceEEEECCCHHHHHHHHHH
Confidence            468999999998 48888898 5 45567888776653                  123568899999999999999999


Q ss_pred             HHcCCceEEEEEeecCCcCCCCHHHH-----HHH-HHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCc
Q psy16200         89 LRCGANKVLVVFRKGCTNIRAVPEEV-----QLA-WEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQ  162 (183)
Q Consensus        89 ~~~G~~~V~lv~r~~~~~~~~~~~~~-----~~~-~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~  162 (183)
                      .++|. +|+++++++.. ++..+.++     +.+ .+.||++++++.+.++..+++.+. +++..           .+|+
T Consensus       194 ~~~g~-~Vtlv~~~~~~-l~~~d~~~~~~l~~~l~~~~gv~i~~~~~v~~i~~~~~~~~-v~~~~-----------~~g~  259 (468)
T 2qae_A          194 ARLGA-EVTVVEFAPRC-APTLDEDVTNALVGALAKNEKMKFMTSTKVVGGTNNGDSVS-LEVEG-----------KNGK  259 (468)
T ss_dssp             HHTTC-EEEEECSSSSS-STTSCHHHHHHHHHHHHHHTCCEEECSCEEEEEEECSSSEE-EEEEC-----------C---
T ss_pred             HHhCC-EEEEEecCCcc-cccCCHHHHHHHHHHHhhcCCcEEEeCCEEEEEEEcCCeEE-EEEEc-----------CCCc
Confidence            99997 79999998764 55544332     345 678999999999999986444443 44320           1344


Q ss_pred             eEEEECCEEEEcccccccCC
Q psy16200        163 RIKLKANYIISAFGSTLLDN  182 (183)
Q Consensus       163 ~~~i~~D~Vi~a~G~~p~~~  182 (183)
                      ..+++||.||+|+|++||++
T Consensus       260 ~~~i~~D~vv~a~G~~p~~~  279 (468)
T 2qae_A          260 RETVTCEALLVSVGRRPFTG  279 (468)
T ss_dssp             EEEEEESEEEECSCEEECCT
T ss_pred             eEEEECCEEEECCCcccCCC
Confidence            56799999999999999975

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=99.77  E-value=4.7e-18  Score=144.56  Aligned_cols=140  Identities=16%  Similarity=0.195  Sum_probs=105.1

Q ss_pred             CCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHHH
Q psy16200          9 DGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSA   88 (183)
Q Consensus         9 ~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~l   88 (183)
                      ..||++|+|||+ .|+.|++| | .+..+++++.+++.                  ....+++|+|||||++|+|+|..|
T Consensus       139 ~~~d~lViAtGs-~p~~p~i~-g-~~~~~v~t~~~~~~------------------~~~~~~~vvViGgG~~g~E~A~~l  197 (474)
T 1zmd_A          139 IDTKNILIATGS-EVTPFPGI-T-IDEDTIVSSTGALS------------------LKKVPEKMVVIGAGVIGVELGSVW  197 (474)
T ss_dssp             EEEEEEEECCCE-EECCCTTC-C-CCSSSEECHHHHTT------------------CSSCCSEEEEECCSHHHHHHHHHH
T ss_pred             EEeCEEEECCCC-CCCCCCCC-C-CCcCcEEcHHHHhh------------------ccccCceEEEECCCHHHHHHHHHH
Confidence            468999999999 48888899 5 45556887766542                  123468899999999999999999


Q ss_pred             HHcCCceEEEEEeecCCcCC-CCHHHH-----HHHHHcCcEEEeCCcceEEEccCCc-EEEEEEEEeeecCCCCeecCCC
Q psy16200         89 LRCGANKVLVVFRKGCTNIR-AVPEEV-----QLAWEEKCEFLPFMSPVQVDVKDNK-IAGMQFNRTEQNEKGEWVEDEE  161 (183)
Q Consensus        89 ~~~G~~~V~lv~r~~~~~~~-~~~~~~-----~~~~~~gv~~~~~~~~~~i~~~~~~-v~~v~~~~~~~~~~~~~~~~~g  161 (183)
                      .++|. +|+++++++.. ++ ..+.++     +.+.+.||++++++.+.++..+++. +. +++..          ...+
T Consensus       198 ~~~g~-~Vtlv~~~~~~-l~~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~-v~~~~----------~~~~  264 (474)
T 1zmd_A          198 QRLGA-DVTAVEFLGHV-GGVGIDMEISKNFQRILQKQGFKFKLNTKVTGATKKSDGKID-VSIEA----------ASGG  264 (474)
T ss_dssp             HHTTC-EEEEECSSSSS-SCSSCCHHHHHHHHHHHHHTTCEEECSEEEEEEEECTTSCEE-EEEEE----------TTSC
T ss_pred             HHcCC-EEEEEeccCcc-CCcccCHHHHHHHHHHHHHCCCEEEeCceEEEEEEcCCceEE-EEEEe----------cCCC
Confidence            99997 79999998764 55 443332     3456789999999999999864444 43 44321          0123


Q ss_pred             ceEEEECCEEEEcccccccCC
Q psy16200        162 QRIKLKANYIISAFGSTLLDN  182 (183)
Q Consensus       162 ~~~~i~~D~Vi~a~G~~p~~~  182 (183)
                      ...+++||.||+|+|++||++
T Consensus       265 ~~~~i~~D~vv~a~G~~p~~~  285 (474)
T 1zmd_A          265 KAEVITCDVLLVCIGRRPFTK  285 (474)
T ss_dssp             CCEEEEESEEEECSCEEECCT
T ss_pred             CceEEEcCEEEECcCCCcCCC
Confidence            345799999999999999975

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=99.77  E-value=6.7e-18  Score=142.89  Aligned_cols=141  Identities=16%  Similarity=0.113  Sum_probs=103.5

Q ss_pred             hCCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHH
Q psy16200          8 KDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATS   87 (183)
Q Consensus         8 ~~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~   87 (183)
                      ...||++|||||+ .|+.|++| | .+.+++++..++.......            .....+++++|||||++|+|+|..
T Consensus       101 ~~~~d~lviAtG~-~p~~p~i~-g-~~~~~v~~~~~~~~~~~~~------------~~~~~~~~vvViGgG~~g~E~A~~  165 (452)
T 3oc4_A          101 WYSYDKLILATGA-SQFSTQIR-G-SQTEKLLKYKFLSGALAAV------------PLLENSQTVAVIGAGPIGMEAIDF  165 (452)
T ss_dssp             EEECSEEEECCCC-CBCCCCCB-T-TTCTTEEEGGGCC----CC------------HHHHTCSEEEEECCSHHHHHHHHH
T ss_pred             EEEcCEEEECCCc-ccCCCCCC-C-CCCCCEEEeCCHHHHHHHH------------HHHhcCCEEEEECCCHHHHHHHHH
Confidence            3469999999999 59889999 5 5667888765443221100            012245789999999999999999


Q ss_pred             HHHcCCceEEEEEeecCCcCCC-CHHHH-----HHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCC
Q psy16200         88 ALRCGANKVLVVFRKGCTNIRA-VPEEV-----QLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEE  161 (183)
Q Consensus        88 l~~~G~~~V~lv~r~~~~~~~~-~~~~~-----~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g  161 (183)
                      |.++|. +|++++|+++. ++. .+.++     +.+.+.||++++++.+.++..+++++ .+++             .++
T Consensus       166 l~~~g~-~Vtlv~~~~~~-l~~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v-~v~~-------------~~g  229 (452)
T 3oc4_A          166 LVKMKK-TVHVFESLENL-LPKYFDKEMVAEVQKSLEKQAVIFHFEETVLGIEETANGI-VLET-------------SEQ  229 (452)
T ss_dssp             HHHTTC-EEEEEESSSSS-STTTCCHHHHHHHHHHHHTTTEEEEETCCEEEEEECSSCE-EEEE-------------SSC
T ss_pred             HHhCCC-eEEEEEccCcc-ccccCCHHHHHHHHHHHHHcCCEEEeCCEEEEEEccCCeE-EEEE-------------CCC
Confidence            999997 79999998764 443 33332     24567899999999999998545555 3433             122


Q ss_pred             ceEEEECCEEEEcccccccCC
Q psy16200        162 QRIKLKANYIISAFGSTLLDN  182 (183)
Q Consensus       162 ~~~~i~~D~Vi~a~G~~p~~~  182 (183)
                         +++||.||+|+|++||++
T Consensus       230 ---~i~aD~Vv~A~G~~p~~~  247 (452)
T 3oc4_A          230 ---EISCDSGIFALNLHPQLA  247 (452)
T ss_dssp             ---EEEESEEEECSCCBCCCS
T ss_pred             ---EEEeCEEEECcCCCCChH
Confidence               789999999999999975

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=99.77  E-value=4.1e-18  Score=142.63  Aligned_cols=139  Identities=12%  Similarity=0.158  Sum_probs=104.2

Q ss_pred             hCCCCEEEEccCCCCCcccCCCCCCccCCCceehh---hhHHHHhccccCCccCCCCCCCCCCC-cceEEEEcCChhHHH
Q psy16200          8 KDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSK---TFLPRVATSSKKGLCGGCKKESLPIL-KGTVIVLGAGDTAFD   83 (183)
Q Consensus         8 ~~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~VvViGgG~~g~e   83 (183)
                      ...||++|||||+ .|+.|++| | .+.+++++..   ++......               ... +++|+|||||++|+|
T Consensus       105 ~~~~d~lvlAtG~-~~~~~~i~-g-~~~~~v~~~~~~~d~~~l~~~---------------~~~~~~~vvViGgG~~g~e  166 (415)
T 3lxd_A          105 AIEYGKLIWATGG-DPRRLSCV-G-ADLAGVHAVRTKEDADRLMAE---------------LDAGAKNAVVIGGGYIGLE  166 (415)
T ss_dssp             EEEEEEEEECCCE-ECCCCBTT-S-SCCBTEECCCSHHHHHHHHHH---------------HHTTCCEEEEECCSHHHHH
T ss_pred             EEEeeEEEEccCC-ccCCCCCC-C-ccccCEEEEcCHHHHHHHHHH---------------hhhcCCeEEEECCCHHHHH
Confidence            3469999999998 58999999 5 6777776432   22221110               112 578999999999999


Q ss_pred             HHHHHHHcCCceEEEEEeecCCcCCC-CHHHH-----HHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCee
Q psy16200         84 CATSALRCGANKVLVVFRKGCTNIRA-VPEEV-----QLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWV  157 (183)
Q Consensus        84 ~A~~l~~~G~~~V~lv~r~~~~~~~~-~~~~~-----~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~  157 (183)
                      +|..|.++|. +|+++++.+.. ++. .+.++     +.+.+.||+|++++.+.++..++++++++++            
T Consensus       167 ~A~~l~~~g~-~Vtvv~~~~~~-l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~~v~l------------  232 (415)
T 3lxd_A          167 AAAVLTKFGV-NVTLLEALPRV-LARVAGEALSEFYQAEHRAHGVDLRTGAAMDCIEGDGTKVTGVRM------------  232 (415)
T ss_dssp             HHHHHHHTTC-EEEEEESSSST-TTTTSCHHHHHHHHHHHHHTTCEEEETCCEEEEEESSSBEEEEEE------------
T ss_pred             HHHHHHhcCC-eEEEEecCCch-hhhhcCHHHHHHHHHHHHhCCCEEEECCEEEEEEecCCcEEEEEe------------
Confidence            9999999996 79999998764 432 33322     2346789999999999999876677766665            


Q ss_pred             cCCCceEEEECCEEEEcccccccC
Q psy16200        158 EDEEQRIKLKANYIISAFGSTLLD  181 (183)
Q Consensus       158 ~~~g~~~~i~~D~Vi~a~G~~p~~  181 (183)
                       .+|+  +++||.||+|+|+.||+
T Consensus       233 -~dG~--~i~aD~Vv~a~G~~p~~  253 (415)
T 3lxd_A          233 -QDGS--VIPADIVIVGIGIVPCV  253 (415)
T ss_dssp             -SSSC--EEECSEEEECSCCEESC
T ss_pred             -CCCC--EEEcCEEEECCCCccCh
Confidence             2343  68999999999999986

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=99.76  E-value=2.7e-18  Score=143.28  Aligned_cols=143  Identities=15%  Similarity=0.145  Sum_probs=104.4

Q ss_pred             hCCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHH
Q psy16200          8 KDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATS   87 (183)
Q Consensus         8 ~~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~   87 (183)
                      ...||++|+|||+ .|+.|++| | .+.+++++...+-......            .....+++|+|||+|++|+|+|..
T Consensus        96 ~~~~d~lvlAtG~-~p~~~~i~-g-~~~~~v~~~~~~~d~~~l~------------~~~~~~~~vvViGgG~~g~e~A~~  160 (404)
T 3fg2_P           96 AIEYGHLVLATGA-RNRMLDVP-N-ASLPDVLYLRTLDESEVLR------------QRMPDKKHVVVIGAGFIGLEFAAT  160 (404)
T ss_dssp             EEECSEEEECCCE-EECCCCST-T-TTSTTEECCSSHHHHHHHH------------HHGGGCSEEEEECCSHHHHHHHHH
T ss_pred             EEECCEEEEeeCC-CccCCCCC-C-CCCCcEEEECCHHHHHHHH------------HHhhcCCeEEEECCCHHHHHHHHH
Confidence            3469999999998 58889999 5 6777877533222111100            012245779999999999999999


Q ss_pred             HHHcCCceEEEEEeecCCcCCCCHHHH-----HHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCc
Q psy16200         88 ALRCGANKVLVVFRKGCTNIRAVPEEV-----QLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQ  162 (183)
Q Consensus        88 l~~~G~~~V~lv~r~~~~~~~~~~~~~-----~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~  162 (183)
                      +.++|. +|+++++.+.......+.++     +.+.+.||++++++.+.++..+++++.++++             .+|+
T Consensus       161 l~~~g~-~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~~V~~-------------~dG~  226 (404)
T 3fg2_P          161 ARAKGL-EVDVVELAPRVMARVVTPEISSYFHDRHSGAGIRMHYGVRATEIAAEGDRVTGVVL-------------SDGN  226 (404)
T ss_dssp             HHHTTC-EEEEECSSSSTTTTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEE-------------TTSC
T ss_pred             HHhCCC-EEEEEeCCCcchhhccCHHHHHHHHHHHHhCCcEEEECCEEEEEEecCCcEEEEEe-------------CCCC
Confidence            999997 79999998764222232222     2356789999999999999876677766665             2343


Q ss_pred             eEEEECCEEEEcccccccC
Q psy16200        163 RIKLKANYIISAFGSTLLD  181 (183)
Q Consensus       163 ~~~i~~D~Vi~a~G~~p~~  181 (183)
                        +++||.||+|+|+.||+
T Consensus       227 --~i~aD~Vv~a~G~~p~~  243 (404)
T 3fg2_P          227 --TLPCDLVVVGVGVIPNV  243 (404)
T ss_dssp             --EEECSEEEECCCEEECC
T ss_pred             --EEEcCEEEECcCCccCH
Confidence              78999999999999986

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.76  E-value=5.7e-18  Score=143.74  Aligned_cols=140  Identities=18%  Similarity=0.231  Sum_probs=105.5

Q ss_pred             CCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHHH
Q psy16200          9 DGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSA   88 (183)
Q Consensus         9 ~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~l   88 (183)
                      ..||.+|+|||+ .|+.|+++ | .+.++++++.+++.                  ....+++|+|||||++|+|+|..|
T Consensus       138 i~~d~lIiAtGs-~p~~p~~~-g-~~~~~v~~~~~~~~------------------~~~~~~~vvViGgG~~g~e~A~~l  196 (470)
T 1dxl_A          138 VKGKHIIIATGS-DVKSLPGV-T-IDEKKIVSSTGALA------------------LSEIPKKLVVIGAGYIGLEMGSVW  196 (470)
T ss_dssp             EECSEEEECCCE-EECCBTTB-C-CCSSSEECHHHHTT------------------CSSCCSEEEESCCSHHHHHHHHHH
T ss_pred             EEcCEEEECCCC-CCCCCCCC-C-CCcccEEeHHHhhh------------------hhhcCCeEEEECCCHHHHHHHHHH
Confidence            469999999998 48888898 5 45557877666542                  123568899999999999999999


Q ss_pred             HHcCCceEEEEEeecCCcCCCCHHHH-----HHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCce
Q psy16200         89 LRCGANKVLVVFRKGCTNIRAVPEEV-----QLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQR  163 (183)
Q Consensus        89 ~~~G~~~V~lv~r~~~~~~~~~~~~~-----~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~  163 (183)
                      .++|. +|+++++++.. ++..+.++     +.+.+.||++++++.+.++..+++.+. +++..          ..+|+.
T Consensus       197 ~~~g~-~Vtli~~~~~~-l~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~-v~~~~----------~~~g~~  263 (470)
T 1dxl_A          197 GRIGS-EVTVVEFASEI-VPTMDAEIRKQFQRSLEKQGMKFKLKTKVVGVDTSGDGVK-LTVEP----------SAGGEQ  263 (470)
T ss_dssp             HHHTC-EEEEECSSSSS-STTSCHHHHHHHHHHHHHSSCCEECSEEEEEEECSSSSEE-EEEEE----------SSSCCC
T ss_pred             HHcCC-cEEEEEcCCcc-cccccHHHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCeEE-EEEEe----------cCCCcc
Confidence            99997 79999998764 55544333     245678999999999999986444443 44421          013444


Q ss_pred             EEEECCEEEEcccccccCC
Q psy16200        164 IKLKANYIISAFGSTLLDN  182 (183)
Q Consensus       164 ~~i~~D~Vi~a~G~~p~~~  182 (183)
                      .++++|.||+|+|++||++
T Consensus       264 ~~~~~D~vv~a~G~~p~~~  282 (470)
T 1dxl_A          264 TIIEADVVLVSAGRTPFTS  282 (470)
T ss_dssp             EEEEESEEECCCCEEECCT
T ss_pred             eEEECCEEEECCCCCcCCC
Confidence            6799999999999999975

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=99.76  E-value=8.2e-18  Score=142.71  Aligned_cols=137  Identities=14%  Similarity=0.135  Sum_probs=103.3

Q ss_pred             CCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHHH
Q psy16200          9 DGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSA   88 (183)
Q Consensus         9 ~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~l   88 (183)
                      ..||.+|+|||+. |+.|+++ | .+.. ++++.+++.                  ....+++|+|||||++|+|+|..|
T Consensus       133 ~~~d~lViAtG~~-~~~~~~~-g-~~~~-~~~~~~~~~------------------~~~~~~~vvViGgG~~g~E~A~~l  190 (464)
T 2a8x_A          133 VTFDNAIIATGSS-TRLVPGT-S-LSAN-VVTYEEQIL------------------SRELPKSIIIAGAGAIGMEFGYVL  190 (464)
T ss_dssp             EEEEEEEECCCEE-ECCCTTC-C-CBTT-EECHHHHHT------------------CSSCCSEEEEECCSHHHHHHHHHH
T ss_pred             EEcCEEEECCCCC-CCCCCCC-C-CCce-EEecHHHhh------------------ccccCCeEEEECCcHHHHHHHHHH
Confidence            4689999999994 8888888 5 3433 666665542                  123468899999999999999999


Q ss_pred             HHcCCceEEEEEeecCCcCCCCHHHH-----HHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCce
Q psy16200         89 LRCGANKVLVVFRKGCTNIRAVPEEV-----QLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQR  163 (183)
Q Consensus        89 ~~~G~~~V~lv~r~~~~~~~~~~~~~-----~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~  163 (183)
                      .++|. +|++++|+++. ++..+.++     +.+.+.||++++++.+.++..+++.+. +++.            .+|+.
T Consensus       191 ~~~g~-~Vtlv~~~~~~-l~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~-v~~~------------~~g~~  255 (464)
T 2a8x_A          191 KNYGV-DVTIVEFLPRA-LPNEDADVSKEIEKQFKKLGVTILTATKVESIADGGSQVT-VTVT------------KDGVA  255 (464)
T ss_dssp             HHTTC-EEEEECSSSSS-STTSCHHHHHHHHHHHHHHTCEEECSCEEEEEEECSSCEE-EEEE------------SSSCE
T ss_pred             HHcCC-eEEEEEcCCcc-ccccCHHHHHHHHHHHHHcCCEEEeCcEEEEEEEcCCeEE-EEEE------------cCCce
Confidence            99997 79999998764 55544333     345678999999999999986444443 3331            13445


Q ss_pred             EEEECCEEEEcccccccCC
Q psy16200        164 IKLKANYIISAFGSTLLDN  182 (183)
Q Consensus       164 ~~i~~D~Vi~a~G~~p~~~  182 (183)
                      .+++||.||+|+|++||++
T Consensus       256 ~~~~~D~vv~a~G~~p~~~  274 (464)
T 2a8x_A          256 QELKAEKVLQAIGFAPNVE  274 (464)
T ss_dssp             EEEEESEEEECSCEEECCS
T ss_pred             EEEEcCEEEECCCCCccCC
Confidence            6899999999999999975

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.76  E-value=1.1e-17  Score=143.46  Aligned_cols=134  Identities=16%  Similarity=0.233  Sum_probs=100.1

Q ss_pred             hCCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHH
Q psy16200          8 KDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATS   87 (183)
Q Consensus         8 ~~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~   87 (183)
                      ...||++|||||+ .|+.|++| | .+  .++++.+++.                  ... +++|+|||||++|+|+|..
T Consensus       139 ~~~~d~lViAtGs-~p~~p~i~-G-~~--~~~~~~~~~~------------------~~~-~~~vvViGgG~ig~E~A~~  194 (500)
T 1onf_A          139 ILEGRNILIAVGN-KPVFPPVK-G-IE--NTISSDEFFN------------------IKE-SKKIGIVGSGYIAVELINV  194 (500)
T ss_dssp             --CBSSEEECCCC-CBCCCSCT-T-GG--GCEEHHHHTT------------------CCC-CSEEEEECCSHHHHHHHHH
T ss_pred             EEEeCEEEECCCC-CCCCCCCC-C-CC--cccCHHHHhc------------------cCC-CCeEEEECChHHHHHHHHH
Confidence            4579999999998 48888899 5 33  3666655442                  123 6889999999999999999


Q ss_pred             HHHcCCceEEEEEeecCCcCCCCHHHH-----HHHHHcCcEEEeCCcceEEEccC-CcEEEEEEEEeeecCCCCeecCCC
Q psy16200         88 ALRCGANKVLVVFRKGCTNIRAVPEEV-----QLAWEEKCEFLPFMSPVQVDVKD-NKIAGMQFNRTEQNEKGEWVEDEE  161 (183)
Q Consensus        88 l~~~G~~~V~lv~r~~~~~~~~~~~~~-----~~~~~~gv~~~~~~~~~~i~~~~-~~v~~v~~~~~~~~~~~~~~~~~g  161 (183)
                      |+++|. +|++++|+++. ++..+.++     +.+.+.||++++++.+.++..++ +.+. +++             .+|
T Consensus       195 l~~~g~-~Vtlv~~~~~~-l~~~d~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~~-v~~-------------~~g  258 (500)
T 1onf_A          195 IKRLGI-DSYIFARGNRI-LRKFDESVINVLENDMKKNNINIVTFADVVEIKKVSDKNLS-IHL-------------SDG  258 (500)
T ss_dssp             HHTTTC-EEEEECSSSSS-CTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEESSTTCEE-EEE-------------TTS
T ss_pred             HHHcCC-eEEEEecCCcc-CcccchhhHHHHHHHHHhCCCEEEECCEEEEEEEcCCceEE-EEE-------------CCC
Confidence            999997 79999998764 55544332     34577899999999999997643 3232 333             234


Q ss_pred             ceEEEECCEEEEcccccccCC
Q psy16200        162 QRIKLKANYIISAFGSTLLDN  182 (183)
Q Consensus       162 ~~~~i~~D~Vi~a~G~~p~~~  182 (183)
                      +. +++||.||+|+|++||++
T Consensus       259 ~~-~~~~D~vi~a~G~~p~~~  278 (500)
T 1onf_A          259 RI-YEHFDHVIYCVGRSPDTE  278 (500)
T ss_dssp             CE-EEEESEEEECCCBCCTTT
T ss_pred             cE-EEECCEEEECCCCCcCCC
Confidence            33 489999999999999974

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.76  E-value=1.5e-17  Score=140.78  Aligned_cols=137  Identities=14%  Similarity=0.257  Sum_probs=102.5

Q ss_pred             CCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHHH
Q psy16200          9 DGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSA   88 (183)
Q Consensus         9 ~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~l   88 (183)
                      ..||++|||||+ .|+.|+++ | .+.. ++++.+++.                  ....+++|+|||||++|+|+|..|
T Consensus       132 i~~d~lViATGs-~p~~~~~~-g-~~~~-v~~~~~~~~------------------~~~~~~~vvViGgG~~g~e~A~~l  189 (455)
T 1ebd_A          132 YTFKNAIIATGS-RPIELPNF-K-FSNR-ILDSTGALN------------------LGEVPKSLVVIGGGYIGIELGTAY  189 (455)
T ss_dssp             EECSEEEECCCE-EECCBTTB-C-CCSS-EECHHHHHT------------------CSSCCSEEEEECCSHHHHHHHHHH
T ss_pred             EEeCEEEEecCC-CCCCCCCC-C-ccce-EecHHHHhc------------------cccCCCeEEEECCCHHHHHHHHHH
Confidence            469999999998 48888888 5 3433 666665542                  123468899999999999999999


Q ss_pred             HHcCCceEEEEEeecCCcCCCCHHHH-----HHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCce
Q psy16200         89 LRCGANKVLVVFRKGCTNIRAVPEEV-----QLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQR  163 (183)
Q Consensus        89 ~~~G~~~V~lv~r~~~~~~~~~~~~~-----~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~  163 (183)
                      +++|. +|++++++++. ++..+.++     +.+.+.||++++++.+.++..+++.+. +++.            .++..
T Consensus       190 ~~~g~-~Vtlv~~~~~~-l~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~-v~~~------------~~g~~  254 (455)
T 1ebd_A          190 ANFGT-KVTILEGAGEI-LSGFEKQMAAIIKKRLKKKGVEVVTNALAKGAEEREDGVT-VTYE------------ANGET  254 (455)
T ss_dssp             HHTTC-EEEEEESSSSS-STTSCHHHHHHHHHHHHHTTCEEEESEEEEEEEEETTEEE-EEEE------------ETTEE
T ss_pred             HHcCC-cEEEEEcCCcc-ccccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCeEE-EEEE------------eCCce
Confidence            99997 79999998754 55443332     345678999999999999976444443 3332            12345


Q ss_pred             EEEECCEEEEcccccccCC
Q psy16200        164 IKLKANYIISAFGSTLLDN  182 (183)
Q Consensus       164 ~~i~~D~Vi~a~G~~p~~~  182 (183)
                      .++++|.||+|+|++||++
T Consensus       255 ~~~~~D~vv~a~G~~p~~~  273 (455)
T 1ebd_A          255 KTIDADYVLVTVGRRPNTD  273 (455)
T ss_dssp             EEEEESEEEECSCEEESCS
T ss_pred             eEEEcCEEEECcCCCcccC
Confidence            6799999999999999975

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=99.76  E-value=4.1e-18  Score=145.86  Aligned_cols=140  Identities=19%  Similarity=0.231  Sum_probs=104.7

Q ss_pred             hCCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHH
Q psy16200          8 KDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATS   87 (183)
Q Consensus         8 ~~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~   87 (183)
                      ...||++|||||+ .|+.|++++  ...++++++.+++.                  ....+++|+|||||++|+|+|..
T Consensus       134 ~~~~d~lViATGs-~p~~p~~~~--~~~~~v~t~~~~~~------------------~~~~~k~vvViGgG~ig~E~A~~  192 (492)
T 3ic9_A          134 QVIAKRIVIATGS-RPNYPEFLA--AAGSRLLTNDNLFE------------------LNDLPKSVAVFGPGVIGLELGQA  192 (492)
T ss_dssp             EEEEEEEEECCCE-ECCCCHHHH--TTGGGEECHHHHTT------------------CSSCCSEEEEESSCHHHHHHHHH
T ss_pred             EEEeCEEEEccCC-CCcCCCCCC--ccCCcEEcHHHHhh------------------hhhcCCeEEEECCCHHHHHHHHH
Confidence            3469999999998 488888773  34467887766553                  23457889999999999999999


Q ss_pred             HHHcCCceEEEEEeecCCcCCCCHHHHH----HHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCce
Q psy16200         88 ALRCGANKVLVVFRKGCTNIRAVPEEVQ----LAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQR  163 (183)
Q Consensus        88 l~~~G~~~V~lv~r~~~~~~~~~~~~~~----~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~  163 (183)
                      |+++|. +|++++|+++. ++..+.++.    ...+++|++++++.+.++..+++.+. +++.           ..+|+.
T Consensus       193 l~~~g~-~Vtlv~~~~~~-l~~~d~~~~~~l~~~l~~~V~i~~~~~v~~i~~~~~~v~-v~~~-----------~~~G~~  258 (492)
T 3ic9_A          193 LSRLGV-IVKVFGRSGSV-ANLQDEEMKRYAEKTFNEEFYFDAKARVISTIEKEDAVE-VIYF-----------DKSGQK  258 (492)
T ss_dssp             HHHTTC-EEEEECCTTCC-TTCCCHHHHHHHHHHHHTTSEEETTCEEEEEEECSSSEE-EEEE-----------CTTCCE
T ss_pred             HHHcCC-eEEEEEECCcc-cccCCHHHHHHHHHHHhhCcEEEECCEEEEEEEcCCEEE-EEEE-----------eCCCce
Confidence            999997 79999998764 555443332    22233399999999999986555554 4432           124556


Q ss_pred             EEEECCEEEEcccccccCC
Q psy16200        164 IKLKANYIISAFGSTLLDN  182 (183)
Q Consensus       164 ~~i~~D~Vi~a~G~~p~~~  182 (183)
                      .+++||.||+|+|++||++
T Consensus       259 ~~i~~D~Vi~a~G~~p~~~  277 (492)
T 3ic9_A          259 TTESFQYVLAATGRKANVD  277 (492)
T ss_dssp             EEEEESEEEECSCCEESCS
T ss_pred             EEEECCEEEEeeCCccCCC
Confidence            7899999999999999975

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=99.76  E-value=1.8e-17  Score=140.88  Aligned_cols=139  Identities=19%  Similarity=0.204  Sum_probs=104.9

Q ss_pred             hCCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHH
Q psy16200          8 KDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATS   87 (183)
Q Consensus         8 ~~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~   87 (183)
                      ...||++|||||+. |+.|+.+ + .+...++++.+++.                  ....+++|+|||||++|+|+|..
T Consensus       140 ~~~~d~lvlAtG~~-p~~~~~~-~-~~~~~v~~~~~~~~------------------~~~~~~~v~ViGgG~~g~e~A~~  198 (476)
T 3lad_A          140 VLDTENVILASGSK-PVEIPPA-P-VDQDVIVDSTGALD------------------FQNVPGKLGVIGAGVIGLELGSV  198 (476)
T ss_dssp             EECCSCEEECCCEE-ECCCTTS-C-CCSSSEEEHHHHTS------------------CSSCCSEEEEECCSHHHHHHHHH
T ss_pred             EEEcCEEEEcCCCC-CCCCCCC-C-CCcccEEechhhhc------------------cccCCCeEEEECCCHHHHHHHHH
Confidence            35799999999984 7777766 3 45567887766542                  23456889999999999999999


Q ss_pred             HHHcCCceEEEEEeecCCcCCCCHHHH-----HHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCc
Q psy16200         88 ALRCGANKVLVVFRKGCTNIRAVPEEV-----QLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQ  162 (183)
Q Consensus        88 l~~~G~~~V~lv~r~~~~~~~~~~~~~-----~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~  162 (183)
                      |+++|. +|++++|+++. ++..+.++     +.+.+.||++++++.+.++..+++.+. +++.+           .+| 
T Consensus       199 l~~~g~-~Vtlv~~~~~~-l~~~~~~~~~~l~~~l~~~Gv~v~~~~~v~~i~~~~~~~~-v~~~~-----------~~g-  263 (476)
T 3lad_A          199 WARLGA-EVTVLEAMDKF-LPAVDEQVAKEAQKILTKQGLKILLGARVTGTEVKNKQVT-VKFVD-----------AEG-  263 (476)
T ss_dssp             HHHTTC-EEEEEESSSSS-STTSCHHHHHHHHHHHHHTTEEEEETCEEEEEEECSSCEE-EEEES-----------SSE-
T ss_pred             HHHcCC-cEEEEecCCCc-CcccCHHHHHHHHHHHHhCCCEEEECCEEEEEEEcCCEEE-EEEEe-----------CCC-
Confidence            999997 79999998764 55444333     235678999999999999986555554 44421           122 


Q ss_pred             eEEEECCEEEEcccccccCC
Q psy16200        163 RIKLKANYIISAFGSTLLDN  182 (183)
Q Consensus       163 ~~~i~~D~Vi~a~G~~p~~~  182 (183)
                      ..++++|.||+|+|++||++
T Consensus       264 ~~~~~~D~vi~a~G~~p~~~  283 (476)
T 3lad_A          264 EKSQAFDKLIVAVGRRPVTT  283 (476)
T ss_dssp             EEEEEESEEEECSCEEECCT
T ss_pred             cEEEECCEEEEeeCCcccCC
Confidence            46899999999999999975

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=99.75  E-value=7.5e-18  Score=143.17  Aligned_cols=139  Identities=14%  Similarity=0.139  Sum_probs=102.2

Q ss_pred             CCCCEEEEccCCCCCcccC-CCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHH
Q psy16200          9 DGYTAIFIGIGKPNANVIP-IFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATS   87 (183)
Q Consensus         9 ~~~davviATGa~~p~~l~-i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~   87 (183)
                      ..||++|||||++ |+.|+ +| + ..  +++++.+++...                 ...+++|+|||||++|+|+|..
T Consensus       130 ~~~d~lViATGs~-p~~p~gi~-~-~~--~v~~~~~~~~l~-----------------~~~~~~vvViGgG~~g~e~A~~  187 (464)
T 2eq6_A          130 YGAKSLILATGSE-PLELKGFP-F-GE--DVWDSTRALKVE-----------------EGLPKRLLVIGGGAVGLELGQV  187 (464)
T ss_dssp             EEEEEEEECCCEE-ECCBTTBC-C-SS--SEECHHHHTCGG-----------------GCCCSEEEEECCSHHHHHHHHH
T ss_pred             EEeCEEEEcCCCC-CCCCCCCC-C-CC--cEEcHHHHHhhh-----------------hhcCCEEEEECCCHHHHHHHHH
Confidence            4689999999994 87776 77 3 32  577766654311                 1146889999999999999999


Q ss_pred             HHHcCCceEEEEEeecCCcCCCCHHHH-----HHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCc
Q psy16200         88 ALRCGANKVLVVFRKGCTNIRAVPEEV-----QLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQ  162 (183)
Q Consensus        88 l~~~G~~~V~lv~r~~~~~~~~~~~~~-----~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~  162 (183)
                      |+++|. +|++++++++. ++..+.++     +.+.+.||++++++.+.++..+++.+. +++..     +     .+|+
T Consensus       188 l~~~g~-~Vtlv~~~~~~-l~~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~-v~~~~-----~-----~~g~  254 (464)
T 2eq6_A          188 YRRLGA-EVTLIEYMPEI-LPQGDPETAALLRRALEKEGIRVRTKTKAVGYEKKKDGLH-VRLEP-----A-----EGGE  254 (464)
T ss_dssp             HHHTTC-EEEEECSSSSS-STTSCHHHHHHHHHHHHHTTCEEECSEEEEEEEEETTEEE-EEEEE-----T-----TCCS
T ss_pred             HHHCCC-eEEEEEcCCcc-ccccCHHHHHHHHHHHHhcCCEEEcCCEEEEEEEeCCEEE-EEEee-----c-----CCCc
Confidence            999997 79999998754 55544333     245678999999999999976544443 44421     0     1155


Q ss_pred             eEEEECCEEEEcccccccCC
Q psy16200        163 RIKLKANYIISAFGSTLLDN  182 (183)
Q Consensus       163 ~~~i~~D~Vi~a~G~~p~~~  182 (183)
                      ..++++|.||+|+|++||++
T Consensus       255 ~~~i~~D~vv~a~G~~p~~~  274 (464)
T 2eq6_A          255 GEEVVVDKVLVAVGRKPRTE  274 (464)
T ss_dssp             CEEEEESEEEECSCEEESCT
T ss_pred             eeEEEcCEEEECCCcccCCC
Confidence            56899999999999999975

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=99.75  E-value=1.2e-17  Score=133.75  Aligned_cols=141  Identities=12%  Similarity=0.079  Sum_probs=102.8

Q ss_pred             CCCCEEEEccCCCCCcccCCCCCCccC--CCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHH
Q psy16200          9 DGYTAIFIGIGKPNANVIPIFQGLTEE--MGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCAT   86 (183)
Q Consensus         9 ~~~davviATGa~~p~~l~i~gg~~~~--~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~   86 (183)
                      ..||.+|+|||++ |+.|++| |..++  .++++.. .+.   .              ....+++|+|||+|++|+|+|.
T Consensus       102 ~~~~~lv~AtG~~-~~~~~~~-g~~~~~~~~~~~~~-~~~---~--------------~~~~~~~v~VvG~G~~g~e~A~  161 (310)
T 1fl2_A          102 LKARSIIVATGAK-WRNMNVP-GEDQYRTKGVTYCP-HCD---G--------------PLFKGKRVAVIGGGNSGVEAAI  161 (310)
T ss_dssp             EEEEEEEECCCEE-ECCCCCT-TTTTTBTTTEESCH-HHH---G--------------GGGBTCEEEEECCSHHHHHHHH
T ss_pred             EEeCEEEECcCCC-cCCCCCC-ChhhcccceeEEec-cCc---H--------------hhcCCCEEEEECCCHHHHHHHH
Confidence            4589999999985 7878888 53332  2344322 111   1              1224577999999999999999


Q ss_pred             HHHHcCCceEEEEEeecCCcCCCCHHHHHHHHH-cCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCceEE
Q psy16200         87 SALRCGANKVLVVFRKGCTNIRAVPEEVQLAWE-EKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIK  165 (183)
Q Consensus        87 ~l~~~G~~~V~lv~r~~~~~~~~~~~~~~~~~~-~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~  165 (183)
                      .|++.|. +|++++|++..  .........+.+ .||++++++.+.++..+++++.++++...          .+|+..+
T Consensus       162 ~l~~~g~-~Vtlv~~~~~~--~~~~~~~~~l~~~~gv~v~~~~~v~~i~~~~~~v~~v~~~~~----------~~g~~~~  228 (310)
T 1fl2_A          162 DLAGIVE-HVTLLEFAPEM--KADQVLQDKLRSLKNVDIILNAQTTEVKGDGSKVVGLEYRDR----------VSGDIHN  228 (310)
T ss_dssp             HHHTTBS-EEEEECSSSSC--CSCHHHHHHHHTCTTEEEESSEEEEEEEESSSSEEEEEEEET----------TTCCEEE
T ss_pred             HHHHhCC-EEEEEEeCccc--CccHHHHHHHhhCCCeEEecCCceEEEEcCCCcEEEEEEEEC----------CCCcEEE
Confidence            9999986 79999988643  333333445565 69999999999999875567766776421          2456678


Q ss_pred             EECCEEEEcccccccCC
Q psy16200        166 LKANYIISAFGSTLLDN  182 (183)
Q Consensus       166 i~~D~Vi~a~G~~p~~~  182 (183)
                      +++|.||+|+|++||++
T Consensus       229 i~~D~vi~a~G~~p~~~  245 (310)
T 1fl2_A          229 IELAGIFVQIGLLPNTN  245 (310)
T ss_dssp             EECSEEEECSCEEESCG
T ss_pred             EEcCEEEEeeCCccCch
Confidence            99999999999999863

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=99.75  E-value=9.9e-18  Score=134.71  Aligned_cols=141  Identities=18%  Similarity=0.177  Sum_probs=96.1

Q ss_pred             CCCEEEEccCCCCCcccCCCCCCccCC--CceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHH
Q psy16200         10 GYTAIFIGIGKPNANVIPIFQGLTEEM--GFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATS   87 (183)
Q Consensus        10 ~~davviATGa~~p~~l~i~gg~~~~~--~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~   87 (183)
                      .||++|||||+ .|+.|+|| |.....  ++.+. .+...                 ....+++|+|||||++|+|+|..
T Consensus       104 ~~d~liiAtGs-~~~~~~ip-G~~~~~~~~v~~~-~~~~~-----------------~~~~~k~vvViGgG~ig~E~A~~  163 (312)
T 4gcm_A          104 TAKAVIIATGA-EYKKIGVP-GEQELGGRGVSYC-AVCDG-----------------AFFKNKRLFVIGGGDSAVEEGTF  163 (312)
T ss_dssp             EEEEEEECCCE-EECCCCCT-TTTTTBTTTEESC-HHHHG-----------------GGGTTCEEEEECCSHHHHHHHHH
T ss_pred             EeceeEEcccC-ccCcCCCC-ChhhhCCccEEee-eccCc-----------------cccCCCEEEEECCCHHHHHHHHH
Confidence            58999999998 59999999 543332  33321 11111                 12345789999999999999999


Q ss_pred             HHHcCCceEEEEEeecCCcCCCCHHHHHHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCceEEEE
Q psy16200         88 ALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLK  167 (183)
Q Consensus        88 l~~~G~~~V~lv~r~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~  167 (183)
                      |+++|. +|++++|+++. ++........+.+.++.+............+..........          ...++...++
T Consensus       164 l~~~g~-~Vtlv~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~  231 (312)
T 4gcm_A          164 LTKFAD-KVTIVHRRDEL-RAQRILQDRAFKNDKIDFIWSHTLKSINEKDGKVGSVTLTS----------TKDGSEETHE  231 (312)
T ss_dssp             HTTTCS-EEEEECSSSSC-CSCHHHHHHHHHCTTEEEECSEEEEEEEEETTEEEEEEEEE----------TTTCCEEEEE
T ss_pred             HHhcCC-EEEEEeccccc-CcchhHHHHHHHhcCcceeeecceeeeeccccccccceeee----------ecCCceeEEe
Confidence            999996 79999998753 34333333345667788877776666554333332222221          1355677899


Q ss_pred             CCEEEEcccccccCC
Q psy16200        168 ANYIISAFGSTLLDN  182 (183)
Q Consensus       168 ~D~Vi~a~G~~p~~~  182 (183)
                      +|.|++++|+.||+.
T Consensus       232 ~d~v~~~~g~~~~~~  246 (312)
T 4gcm_A          232 ADGVFIYIGMKPLTA  246 (312)
T ss_dssp             CSEEEECSCEEESCG
T ss_pred             eeeEEeecCCCcCch
Confidence            999999999999864

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=99.75  E-value=1.8e-18  Score=144.86  Aligned_cols=141  Identities=16%  Similarity=0.126  Sum_probs=101.1

Q ss_pred             hCCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHH
Q psy16200          8 KDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATS   87 (183)
Q Consensus         8 ~~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~   87 (183)
                      ...||++|||||+. |+.|++| | .+.+++++..++.......            .....+++|+|||||++|+|+|..
T Consensus        97 ~~~~d~lvlAtG~~-p~~~~ip-G-~~~~~v~~~~~~~d~~~l~------------~~~~~~~~vvViGgG~~g~E~A~~  161 (410)
T 3ef6_A           97 TLSADAIVIATGSR-ARTMALP-G-SQLPGVVTLRTYGDVQVLR------------DSWTSATRLLIVGGGLIGCEVATT  161 (410)
T ss_dssp             EEECSEEEECCCEE-ECCCCCT-T-TTSTTEECCCSHHHHHHHH------------HHCCTTCEEEEECCSHHHHHHHHH
T ss_pred             EEECCEEEEccCCc-ccCCCCC-C-ccccceEEeccHHHHHHHH------------HHhccCCeEEEECCCHHHHHHHHH
Confidence            34699999999985 8999999 5 6677776533322111110            012235789999999999999999


Q ss_pred             HHHcCCceEEEEEeecCCcCCC-CHHH-----HHHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCC
Q psy16200         88 ALRCGANKVLVVFRKGCTNIRA-VPEE-----VQLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEE  161 (183)
Q Consensus        88 l~~~G~~~V~lv~r~~~~~~~~-~~~~-----~~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g  161 (183)
                      |.++|. +|+++++.+.. ++. .+.+     .+.+.+.||+++++..+.++..+ +++.++++             .+|
T Consensus       162 l~~~g~-~Vtvv~~~~~~-l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~-~~~~~v~~-------------~dg  225 (410)
T 3ef6_A          162 ARKLGL-SVTILEAGDEL-LVRVLGRRIGAWLRGLLTELGVQVELGTGVVGFSGE-GQLEQVMA-------------SDG  225 (410)
T ss_dssp             HHHTTC-EEEEECSSSSS-SHHHHCHHHHHHHHHHHHHHTCEEECSCCEEEEECS-SSCCEEEE-------------TTS
T ss_pred             HHhCCC-eEEEEecCCcc-chhhcCHHHHHHHHHHHHHCCCEEEeCCEEEEEecc-CcEEEEEE-------------CCC
Confidence            999996 79999988654 321 1122     23456789999999999999863 34444544             234


Q ss_pred             ceEEEECCEEEEcccccccC
Q psy16200        162 QRIKLKANYIISAFGSTLLD  181 (183)
Q Consensus       162 ~~~~i~~D~Vi~a~G~~p~~  181 (183)
                      +  +++||.||+|+|+.||+
T Consensus       226 ~--~i~aD~Vv~a~G~~p~~  243 (410)
T 3ef6_A          226 R--SFVADSALICVGAEPAD  243 (410)
T ss_dssp             C--EEECSEEEECSCEEECC
T ss_pred             C--EEEcCEEEEeeCCeecH
Confidence            3  78999999999999986

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=99.75  E-value=1.4e-17  Score=142.78  Aligned_cols=135  Identities=19%  Similarity=0.274  Sum_probs=101.6

Q ss_pred             hCCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHH
Q psy16200          8 KDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATS   87 (183)
Q Consensus         8 ~~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~   87 (183)
                      ...||++|||||+ .|+.|++| | .+  .++++.+++.                  ....+++++|||||++|+|+|..
T Consensus       153 ~~~~d~lViATGs-~p~~p~i~-G-~~--~~~~~~~~~~------------------~~~~~~~vvViGgG~ig~E~A~~  209 (495)
T 2wpf_A          153 RLQADHILLATGS-WPQMPAIP-G-IE--HCISSNEAFY------------------LPEPPRRVLTVGGGFISVEFAGI  209 (495)
T ss_dssp             EEEEEEEEECCCE-EECCCCCT-T-GG--GCEEHHHHTT------------------CSSCCSEEEEECSSHHHHHHHHH
T ss_pred             EEEcCEEEEeCCC-CcCCCCCC-C-cc--ccccHHHHHh------------------hhhcCCeEEEECCCHHHHHHHHH
Confidence            3469999999998 48888899 5 33  4666666542                  12356889999999999999999


Q ss_pred             HHHc---CCceEEEEEeecCCcCCCCHHHH-----HHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecC
Q psy16200         88 ALRC---GANKVLVVFRKGCTNIRAVPEEV-----QLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVED  159 (183)
Q Consensus        88 l~~~---G~~~V~lv~r~~~~~~~~~~~~~-----~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~  159 (183)
                      |+++   |. +|++++|+++. ++..+.++     +.+.++||+|++++.+.++..+++....+++             .
T Consensus       210 l~~~~~~g~-~Vtlv~~~~~~-l~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~v~~-------------~  274 (495)
T 2wpf_A          210 FNAYKPPGG-KVTLCYRNNLI-LRGFDETIREEVTKQLTANGIEIMTNENPAKVSLNTDGSKHVTF-------------E  274 (495)
T ss_dssp             HHHHCCTTC-EEEEEESSSSS-CTTSCHHHHHHHHHHHHHTTCEEEESCCEEEEEECTTSCEEEEE-------------T
T ss_pred             HHhhCCCCC-eEEEEEcCCcc-ccccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCceEEEEE-------------C
Confidence            9999   97 79999998764 55544332     3456789999999999999764333222433             2


Q ss_pred             CCceEEEECCEEEEcccccccCC
Q psy16200        160 EEQRIKLKANYIISAFGSTLLDN  182 (183)
Q Consensus       160 ~g~~~~i~~D~Vi~a~G~~p~~~  182 (183)
                      +|+  +++||.||+|+|++||++
T Consensus       275 ~G~--~i~~D~vv~a~G~~p~~~  295 (495)
T 2wpf_A          275 SGK--TLDVDVVMMAIGRIPRTN  295 (495)
T ss_dssp             TSC--EEEESEEEECSCEEECCG
T ss_pred             CCc--EEEcCEEEECCCCccccc
Confidence            343  689999999999999974

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=99.75  E-value=2e-17  Score=140.42  Aligned_cols=133  Identities=23%  Similarity=0.272  Sum_probs=101.5

Q ss_pred             CCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHHH
Q psy16200          9 DGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSA   88 (183)
Q Consensus         9 ~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~l   88 (183)
                      ..||++|||||+ .|+.|++| | .+..+++++.+++..                  ...+++|+|||||++|+|+|..|
T Consensus       137 ~~~d~lviAtGs-~p~~p~i~-G-~~~~~~~~~~~~~~~------------------~~~~~~vvViGgG~~g~E~A~~l  195 (467)
T 1zk7_A          137 VMFDRCLVATGA-SPAVPPIP-G-LKESPYWTSTEALAS------------------DTIPERLAVIGSSVVALELAQAF  195 (467)
T ss_dssp             EECSEEEECCCE-EECCCCCT-T-TTTSCCBCHHHHHHC------------------SSCCSEEEEECCSHHHHHHHHHH
T ss_pred             EEeCEEEEeCCC-CCCCCCCC-C-CCcCceecHHHHhcc------------------cccCCEEEEECCCHHHHHHHHHH
Confidence            469999999998 58888999 5 455567777666531                  23568899999999999999999


Q ss_pred             HHcCCceEEEEEeecCCcCCCCHHHH-----HHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCce
Q psy16200         89 LRCGANKVLVVFRKGCTNIRAVPEEV-----QLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQR  163 (183)
Q Consensus        89 ~~~G~~~V~lv~r~~~~~~~~~~~~~-----~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~  163 (183)
                      .++|. +|+++++++.. ++ .+.++     +.+.+.||++++++.+.++..+++.+ .+++              ++  
T Consensus       196 ~~~g~-~Vtlv~~~~~~-l~-~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~-~v~~--------------~~--  255 (467)
T 1zk7_A          196 ARLGS-KVTVLARNTLF-FR-EDPAIGEAVTAAFRAEGIEVLEHTQASQVAHMDGEF-VLTT--------------TH--  255 (467)
T ss_dssp             HHTTC-EEEEECSSCTT-TT-SCHHHHHHHHHHHHHTTCEEETTCCEEEEEEETTEE-EEEE--------------TT--
T ss_pred             HHcCC-EEEEEEECCcc-CC-CCHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEE-EEEE--------------CC--
Confidence            99997 79999998754 55 33322     24567899999999999997543332 2322              22  


Q ss_pred             EEEECCEEEEcccccccCC
Q psy16200        164 IKLKANYIISAFGSTLLDN  182 (183)
Q Consensus       164 ~~i~~D~Vi~a~G~~p~~~  182 (183)
                      .+++||.||+|+|+.||++
T Consensus       256 ~~i~aD~Vv~a~G~~p~~~  274 (467)
T 1zk7_A          256 GELRADKLLVATGRTPNTR  274 (467)
T ss_dssp             EEEEESEEEECSCEEESCT
T ss_pred             cEEEcCEEEECCCCCcCCC
Confidence            3689999999999999975

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=99.74  E-value=1e-17  Score=143.21  Aligned_cols=142  Identities=16%  Similarity=0.141  Sum_probs=101.0

Q ss_pred             CCCCEEEEccCCCCCcccCCCCCCcc-----------CCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcC
Q psy16200          9 DGYTAIFIGIGKPNANVIPIFQGLTE-----------EMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGA   77 (183)
Q Consensus         9 ~~~davviATGa~~p~~l~i~gg~~~-----------~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGg   77 (183)
                      ..||.+|||||+ .|+.|++| | .+           .+++++..++.........          .....+++|+||||
T Consensus       136 ~~~d~lviAtG~-~p~~p~i~-G-~~~~~~~~~f~~~~~~v~~~~~~~~~~~~~~~----------~~~~~~~~vvVIGg  202 (490)
T 2bc0_A          136 ETYDKLIFATGS-QPILPPIK-G-AEIKEGSLEFEATLENLQFVKLYQNSADVIAK----------LENKDIKRVAVVGA  202 (490)
T ss_dssp             EECSEEEECCCE-EECCCSCB-T-CCBCTTCTTCCBSSTTEEECSSHHHHHHHHHH----------TTSTTCCEEEEECC
T ss_pred             EECCEEEECCCC-CcCCCCCC-C-ccccccccccccccCCEEEeCCHHHHHHHHHH----------hhhcCCceEEEECC
Confidence            469999999998 48888899 5 45           5677764333221110000          00134678999999


Q ss_pred             ChhHHHHHHHHHHcCCceEEEEEeecCCcCC-CCHHHH-----HHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeec
Q psy16200         78 GDTAFDCATSALRCGANKVLVVFRKGCTNIR-AVPEEV-----QLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQN  151 (183)
Q Consensus        78 G~~g~e~A~~l~~~G~~~V~lv~r~~~~~~~-~~~~~~-----~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~  151 (183)
                      |++|+|+|..|+++|. +|++++|++.. ++ ..+.++     +.+.+.||++++++.+.++.. ++++..+++      
T Consensus       203 G~ig~E~A~~l~~~g~-~Vtlv~~~~~~-l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~-~~~v~~v~~------  273 (490)
T 2bc0_A          203 GYIGVELAEAFQRKGK-EVVLIDVVDTC-LAGYYDRDLTDLMAKNMEEHGIQLAFGETVKEVAG-NGKVEKIIT------  273 (490)
T ss_dssp             SHHHHHHHHHHHHTTC-EEEEEESSSST-TTTTSCHHHHHHHHHHHHTTTCEEEETCCEEEEEC-SSSCCEEEE------
T ss_pred             CHHHHHHHHHHHHCCC-eEEEEEcccch-hhhHHHHHHHHHHHHHHHhCCeEEEeCCEEEEEEc-CCcEEEEEE------
Confidence            9999999999999997 79999998764 44 333332     235678999999999999975 444432332      


Q ss_pred             CCCCeecCCCceEEEECCEEEEcccccccCC
Q psy16200        152 EKGEWVEDEEQRIKLKANYIISAFGSTLLDN  182 (183)
Q Consensus       152 ~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~  182 (183)
                              ++  .+++||.||+|+|++||++
T Consensus       274 --------~g--~~i~~D~Vi~a~G~~p~~~  294 (490)
T 2bc0_A          274 --------DK--NEYDVDMVILAVGFRPNTT  294 (490)
T ss_dssp             --------SS--CEEECSEEEECCCEEECCG
T ss_pred             --------CC--cEEECCEEEECCCCCcChH
Confidence                    23  3689999999999999974

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=99.74  E-value=9e-18  Score=142.04  Aligned_cols=141  Identities=13%  Similarity=0.126  Sum_probs=102.8

Q ss_pred             CCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHHH
Q psy16200          9 DGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSA   88 (183)
Q Consensus         9 ~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~l   88 (183)
                      ..||.+|||||+ .|+.|++| | .+.+++++..++.......            .....+++|+|||||++|+|+|..|
T Consensus       104 ~~~d~lviAtGs-~p~~p~i~-g-~~~~~v~~~~~~~~~~~~~------------~~~~~~~~vvViGgG~~g~E~A~~l  168 (452)
T 2cdu_A          104 EAYDKLIMTTGS-KPTVPPIP-G-IDSSRVYLCKNYNDAKKLF------------EEAPKAKTITIIGSGYIGAELAEAY  168 (452)
T ss_dssp             EECSEEEECCCE-EECCCCCT-T-TTSTTEEECSSHHHHHHHH------------HHGGGCSEEEEECCSHHHHHHHHHH
T ss_pred             EECCEEEEccCC-CcCCCCCC-C-CCCCCEEEeCcHHHHHHHH------------HHhccCCeEEEECcCHHHHHHHHHH
Confidence            469999999998 48888999 5 5667787644333221110            0123457899999999999999999


Q ss_pred             HHcCCceEEEEEeecCCcCC-CCHHHH-----HHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCc
Q psy16200         89 LRCGANKVLVVFRKGCTNIR-AVPEEV-----QLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQ  162 (183)
Q Consensus        89 ~~~G~~~V~lv~r~~~~~~~-~~~~~~-----~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~  162 (183)
                      .++|. +|+++++++.. ++ ..+.++     ..+.+.||++++++.+.++..+++++..++              .+| 
T Consensus       169 ~~~g~-~Vtlv~~~~~~-l~~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~v~~v~--------------~~g-  231 (452)
T 2cdu_A          169 SNQNY-NVNLIDGHERV-LYKYFDKEFTDILAKDYEAHGVNLVLGSKVAAFEEVDDEIITKT--------------LDG-  231 (452)
T ss_dssp             HTTTC-EEEEEESSSST-TTTTSCHHHHHHHHHHHHHTTCEEEESSCEEEEEEETTEEEEEE--------------TTS-
T ss_pred             HhcCC-EEEEEEcCCch-hhhhhhhhHHHHHHHHHHHCCCEEEcCCeeEEEEcCCCeEEEEE--------------eCC-
Confidence            99997 79999998764 44 333332     345678999999999999975455554332              233 


Q ss_pred             eEEEECCEEEEcccccccCC
Q psy16200        163 RIKLKANYIISAFGSTLLDN  182 (183)
Q Consensus       163 ~~~i~~D~Vi~a~G~~p~~~  182 (183)
                       .+++||.||+|+|++||++
T Consensus       232 -~~i~~D~vv~a~G~~p~~~  250 (452)
T 2cdu_A          232 -KEIKSDIAILCIGFRPNTE  250 (452)
T ss_dssp             -CEEEESEEEECCCEEECCG
T ss_pred             -CEEECCEEEECcCCCCCHH
Confidence             3689999999999999974

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=99.74  E-value=2.9e-17  Score=139.57  Aligned_cols=134  Identities=17%  Similarity=0.092  Sum_probs=100.8

Q ss_pred             CCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHHH
Q psy16200          9 DGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSA   88 (183)
Q Consensus         9 ~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~l   88 (183)
                      ..||++|||||+ .|+.|++| | .+  .++++.+++..                  ...+++|+|||||++|+|+|..|
T Consensus       129 ~~~d~lviAtGs-~p~~p~i~-G-~~--~~~~~~~~~~~------------------~~~~~~vvVvGgG~~g~e~A~~l  185 (463)
T 2r9z_A          129 LSADHIVIATGG-RPIVPRLP-G-AE--LGITSDGFFAL------------------QQQPKRVAIIGAGYIGIELAGLL  185 (463)
T ss_dssp             EEEEEEEECCCE-EECCCSCT-T-GG--GSBCHHHHHHC------------------SSCCSEEEEECCSHHHHHHHHHH
T ss_pred             EEcCEEEECCCC-CCCCCCCC-C-cc--ceecHHHHhhh------------------hccCCEEEEECCCHHHHHHHHHH
Confidence            468999999998 48888899 5 33  36666665531                  23467899999999999999999


Q ss_pred             HHcCCceEEEEEeecCCcCCCCHHHH-----HHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCce
Q psy16200         89 LRCGANKVLVVFRKGCTNIRAVPEEV-----QLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQR  163 (183)
Q Consensus        89 ~~~G~~~V~lv~r~~~~~~~~~~~~~-----~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~  163 (183)
                      +++|. +|+++++++.. ++..+.++     +.+.+.||++++++.+.++..+++.+. +++             .+|+.
T Consensus       186 ~~~G~-~Vtlv~~~~~~-l~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~-v~~-------------~~G~~  249 (463)
T 2r9z_A          186 RSFGS-EVTVVALEDRL-LFQFDPLLSATLAENMHAQGIETHLEFAVAALERDAQGTT-LVA-------------QDGTR  249 (463)
T ss_dssp             HHTTC-EEEEECSSSSS-STTSCHHHHHHHHHHHHHTTCEEESSCCEEEEEEETTEEE-EEE-------------TTCCE
T ss_pred             HhcCC-EEEEEEcCCcc-ccccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCeEE-EEE-------------eCCcE
Confidence            99997 79999998654 44433322     345678999999999999976444332 333             23443


Q ss_pred             EEEECCEEEEcccccccCC
Q psy16200        164 IKLKANYIISAFGSTLLDN  182 (183)
Q Consensus       164 ~~i~~D~Vi~a~G~~p~~~  182 (183)
                       ++++|.||+|+|++||++
T Consensus       250 -~i~~D~vv~a~G~~p~~~  267 (463)
T 2r9z_A          250 -LEGFDSVIWAVGRAPNTR  267 (463)
T ss_dssp             -EEEESEEEECSCEEESCT
T ss_pred             -EEEcCEEEECCCCCcCCC
Confidence             789999999999999975

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=99.73  E-value=5e-17  Score=138.87  Aligned_cols=140  Identities=19%  Similarity=0.197  Sum_probs=101.1

Q ss_pred             hCCCCEEEEccCCCCCcccCCCCCCc---cCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHH
Q psy16200          8 KDGYTAIFIGIGKPNANVIPIFQGLT---EEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDC   84 (183)
Q Consensus         8 ~~~~davviATGa~~p~~l~i~gg~~---~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~   84 (183)
                      ...||+||||||+. |  +++| |+.   +...++++.+.+.                  ....+++|+|||||++|+|+
T Consensus       156 ~~~~d~lViATGs~-p--~~ip-g~~~~~~~~~~~~~~~~~~------------------~~~~~~~vvViGgG~~g~E~  213 (491)
T 3urh_A          156 VLEAKNVVIATGSD-V--AGIP-GVEVAFDEKTIVSSTGALA------------------LEKVPASMIVVGGGVIGLEL  213 (491)
T ss_dssp             EEECSEEEECCCEE-C--CCBT-TBCCCCCSSSEECHHHHTS------------------CSSCCSEEEEECCSHHHHHH
T ss_pred             EEEeCEEEEccCCC-C--CCCC-CcccccCCeeEEehhHhhh------------------hhhcCCeEEEECCCHHHHHH
Confidence            34699999999985 5  3566 432   2234565544331                  23456889999999999999


Q ss_pred             HHHHHHcCCceEEEEEeecCCcCCCCHHHH-----HHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecC
Q psy16200         85 ATSALRCGANKVLVVFRKGCTNIRAVPEEV-----QLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVED  159 (183)
Q Consensus        85 A~~l~~~G~~~V~lv~r~~~~~~~~~~~~~-----~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~  159 (183)
                      |..|+++|. +|+++++++.. ++..+.++     +.+.+.||++++++.+.++..+++.+. +++..          ..
T Consensus       214 A~~l~~~g~-~Vtlv~~~~~~-l~~~d~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~~~-v~~~~----------~~  280 (491)
T 3urh_A          214 GSVWARLGA-KVTVVEFLDTI-LGGMDGEVAKQLQRMLTKQGIDFKLGAKVTGAVKSGDGAK-VTFEP----------VK  280 (491)
T ss_dssp             HHHHHHHTC-EEEEECSSSSS-SSSSCHHHHHHHHHHHHHTTCEEECSEEEEEEEEETTEEE-EEEEE----------TT
T ss_pred             HHHHHHcCC-EEEEEeccccc-cccCCHHHHHHHHHHHHhCCCEEEECCeEEEEEEeCCEEE-EEEEe----------cC
Confidence            999999997 79999998764 55443332     235678999999999999986555443 44432          02


Q ss_pred             CCceEEEECCEEEEcccccccCC
Q psy16200        160 EEQRIKLKANYIISAFGSTLLDN  182 (183)
Q Consensus       160 ~g~~~~i~~D~Vi~a~G~~p~~~  182 (183)
                      +|+..+++||.||+|+|++||++
T Consensus       281 ~g~~~~i~~D~Vi~a~G~~p~~~  303 (491)
T 3urh_A          281 GGEATTLDAEVVLIATGRKPSTD  303 (491)
T ss_dssp             SCCCEEEEESEEEECCCCEECCT
T ss_pred             CCceEEEEcCEEEEeeCCccCCC
Confidence            25557899999999999999975

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=99.73  E-value=1.4e-17  Score=133.37  Aligned_cols=141  Identities=21%  Similarity=0.222  Sum_probs=102.1

Q ss_pred             CCCCEEEEccCCCCCcccCCCCCCccC--CCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHH
Q psy16200          9 DGYTAIFIGIGKPNANVIPIFQGLTEE--MGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCAT   86 (183)
Q Consensus         9 ~~~davviATGa~~p~~l~i~gg~~~~--~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~   86 (183)
                      ..||.||+|||++ |+.|++| |..++  +++++.. ....                 ....+++|+|||+|++|+|+|.
T Consensus       101 ~~~~~vv~AtG~~-~~~~~~~-g~~~~~~~~~~~~~-~~~~-----------------~~~~~~~v~VvG~G~~g~e~A~  160 (311)
T 2q0l_A          101 FEAKSVIIATGGS-PKRTGIK-GESEYWGKGVSTCA-TCDG-----------------FFYKNKEVAVLGGGDTAVEEAI  160 (311)
T ss_dssp             EEEEEEEECCCEE-ECCCCCB-THHHHBTTTEESCH-HHHG-----------------GGGTTSEEEEECCSHHHHHHHH
T ss_pred             EECCEEEECCCCC-CCCCCCC-ChhhccCCcEEEee-cCCh-----------------hhcCCCEEEEECCCHHHHHHHH
Confidence            3589999999984 8888888 53222  3444322 1111                 1223477999999999999999


Q ss_pred             HHHHcCCceEEEEEeecCCcCCCCHHHHHHHHH-cCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCceEE
Q psy16200         87 SALRCGANKVLVVFRKGCTNIRAVPEEVQLAWE-EKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIK  165 (183)
Q Consensus        87 ~l~~~G~~~V~lv~r~~~~~~~~~~~~~~~~~~-~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~  165 (183)
                      .|.+.|. +|++++|++.  ++......+.+.+ .||++++++.+.++..+++++.++++...          .+|+..+
T Consensus       161 ~l~~~g~-~Vtlv~~~~~--~~~~~~~~~~l~~~~gv~v~~~~~v~~i~~~~~~v~~v~~~~~----------~~g~~~~  227 (311)
T 2q0l_A          161 YLANICK-KVYLIHRRDG--FRCAPITLEHAKNNDKIEFLTPYVVEEIKGDASGVSSLSIKNT----------ATNEKRE  227 (311)
T ss_dssp             HHHTTSS-EEEEECSSSS--CCSCHHHHHHHHTCTTEEEETTEEEEEEEEETTEEEEEEEEET----------TTCCEEE
T ss_pred             HHHhcCC-EEEEEeeCCc--cCCCHHHHHHHhhCCCeEEEeCCEEEEEECCCCcEeEEEEEec----------CCCceEE
Confidence            9999986 7999998764  3344444555554 69999999999999765466666666421          2466678


Q ss_pred             EECCEEEEcccccccCC
Q psy16200        166 LKANYIISAFGSTLLDN  182 (183)
Q Consensus       166 i~~D~Vi~a~G~~p~~~  182 (183)
                      ++||.||+|+|++||++
T Consensus       228 i~~D~vi~a~G~~p~~~  244 (311)
T 2q0l_A          228 LVVPGFFIFVGYDVNNA  244 (311)
T ss_dssp             EECSEEEECSCEEECCG
T ss_pred             EecCEEEEEecCccChh
Confidence            99999999999999864

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=99.73  E-value=4.2e-17  Score=141.18  Aligned_cols=142  Identities=14%  Similarity=0.150  Sum_probs=102.0

Q ss_pred             CCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHHH
Q psy16200          9 DGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSA   88 (183)
Q Consensus         9 ~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~l   88 (183)
                      ..||++|||||+ .|+.|++| | .+..++++..++.........          -....+++|+|||||++|+|+|..|
T Consensus       104 ~~~d~lviAtG~-~p~~p~ip-G-~~~~~v~~~~~~~~~~~l~~~----------~~~~~~~~vvViGgG~~g~e~A~~l  170 (565)
T 3ntd_A          104 ESYDTLLLSPGA-APIVPPIP-G-VDNPLTHSLRNIPDMDRILQT----------IQMNNVEHATVVGGGFIGLEMMESL  170 (565)
T ss_dssp             EECSEEEECCCE-EECCCCCT-T-CCSTTEECCSSHHHHHHHHHH----------HHHTTCSEEEEECCSHHHHHHHHHH
T ss_pred             EECCEEEECCCC-CCCCCCCC-C-CCCCCEEEeCCHHHHHHHHHH----------HhhCCCCEEEEECCCHHHHHHHHHH
Confidence            469999999999 58889999 5 566777665543322110000          0012457899999999999999999


Q ss_pred             HHcCCceEEEEEeecCCcCCCCHHHH-----HHHHHcCcEEEeCCcceEEEcc-------------------CCcEEEEE
Q psy16200         89 LRCGANKVLVVFRKGCTNIRAVPEEV-----QLAWEEKCEFLPFMSPVQVDVK-------------------DNKIAGMQ  144 (183)
Q Consensus        89 ~~~G~~~V~lv~r~~~~~~~~~~~~~-----~~~~~~gv~~~~~~~~~~i~~~-------------------~~~v~~v~  144 (183)
                      +++|. +|++++|++.. ++..+.++     +.+.+.||++++++.+.++..+                   +++++ ++
T Consensus       171 ~~~g~-~Vtlv~~~~~~-l~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~  247 (565)
T 3ntd_A          171 HHLGI-KTTLLELADQV-MTPVDREMAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHIKGHLS-LT  247 (565)
T ss_dssp             HHTTC-EEEEEESSSSS-CTTSCHHHHHHHHHHHHHTTCEEEETCCEEEEEEECCCCCCCGGGTCCCTTCCTTCEEE-EE
T ss_pred             HhcCC-cEEEEEcCCcc-chhcCHHHHHHHHHHHHHCCCEEEeCCeEEEEeccccccccccccccccccccCCCcEE-EE
Confidence            99997 79999998764 55544332     2456789999999999998752                   33332 22


Q ss_pred             EEEeeecCCCCeecCCCceEEEECCEEEEcccccccC
Q psy16200        145 FNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLD  181 (183)
Q Consensus       145 ~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~  181 (183)
                      +             .+|+  +++||.||+|+|++||+
T Consensus       248 ~-------------~~g~--~i~~D~vi~a~G~~p~~  269 (565)
T 3ntd_A          248 L-------------SNGE--LLETDLLIMAIGVRPET  269 (565)
T ss_dssp             E-------------TTSC--EEEESEEEECSCEEECC
T ss_pred             E-------------cCCC--EEEcCEEEECcCCccch
Confidence            2             2333  78999999999999986

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=99.73  E-value=6.4e-18  Score=154.92  Aligned_cols=147  Identities=10%  Similarity=0.098  Sum_probs=110.6

Q ss_pred             hCCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHH
Q psy16200          8 KDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATS   87 (183)
Q Consensus         8 ~~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~   87 (183)
                      ...||+||||||+. |+.+++| | .+.++|+++.++....+..             ....+++|+|||+|++|+|+|..
T Consensus       239 ~i~~d~lVlATGs~-p~~~~ip-G-~~~~gv~~~~~~~~~l~~~-------------~~~~gk~vvViGgG~~g~E~A~~  302 (965)
T 2gag_A          239 HIRAKQVVLATGAH-ERPIVFE-N-NDRPGIMLAGAVRSYLNRY-------------GVRAGARIAVATTNDSAYELVRE  302 (965)
T ss_dssp             EEEEEEEEECCCEE-ECCCCCB-T-CCSTTEEEHHHHHHHHHTT-------------CEESCSSEEEEESSTTHHHHHHH
T ss_pred             EEECCEEEECCCCc-cCCCCCC-C-CCCCCEEEhHHHHHHHHhc-------------CCCCCCeEEEEcCCHHHHHHHHH
Confidence            45799999999995 8889999 5 6788999887654433210             11234679999999999999999


Q ss_pred             HHHcCCceEEEEEeecCCcCCCCHHHHHHHHHcCcEEEeCCcceEEEcc-CCcEEEEEEEEeeecCCCCeecCCCceEEE
Q psy16200         88 ALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFMSPVQVDVK-DNKIAGMQFNRTEQNEKGEWVEDEEQRIKL  166 (183)
Q Consensus        88 l~~~G~~~V~lv~r~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~-~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i  166 (183)
                      |++.|. +|+++++++.. ++   . ...+.+.||++++++.+.++.++ +++++++++..+  +..+    .+|+..++
T Consensus       303 L~~~G~-~Vtvv~~~~~~-~~---~-~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~~~~~--~~~~----~~G~~~~i  370 (965)
T 2gag_A          303 LAATGG-VVAVIDARSSI-SA---A-AAQAVADGVQVISGSVVVDTEADENGELSAIVVAEL--DEAR----ELGGTQRF  370 (965)
T ss_dssp             HGGGTC-CSEEEESCSSC-CH---H-HHHHHHTTCCEEETEEEEEEEECTTSCEEEEEEEEE--CTTC----CEEEEEEE
T ss_pred             HHHcCC-cEEEEECCCcc-ch---h-HHHHHhCCeEEEeCCEeEEEeccCCCCEEEEEEEec--cccC----CCCceEEE
Confidence            999998 59999998653 32   1 55678899999999999999864 567777777531  0000    02445789


Q ss_pred             ECCEEEEcccccccCC
Q psy16200        167 KANYIISAFGSTLLDN  182 (183)
Q Consensus       167 ~~D~Vi~a~G~~p~~~  182 (183)
                      +||.|++|+|++||++
T Consensus       371 ~~D~Vv~a~G~~P~~~  386 (965)
T 2gag_A          371 EADVLAVAGGFNPVVH  386 (965)
T ss_dssp             ECSEEEEECCEEECCH
T ss_pred             EcCEEEECCCcCcChH
Confidence            9999999999999863

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=99.73  E-value=6.4e-17  Score=139.41  Aligned_cols=140  Identities=11%  Similarity=0.227  Sum_probs=105.4

Q ss_pred             CCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCc-ceEEEEcCChhHHHHHHH
Q psy16200          9 DGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILK-GTVIVLGAGDTAFDCATS   87 (183)
Q Consensus         9 ~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~VvViGgG~~g~e~A~~   87 (183)
                      ..||++|||||+ .|+.|++| | .+..+++++.+++...                 ...+ ++|+|||||++|+|+|..
T Consensus       173 ~~~d~lViATGs-~p~~p~i~-G-~~~~~v~~~~~~~~~l-----------------~~~~g~~vvViGgG~~g~E~A~~  232 (523)
T 1mo9_A          173 FKAKNLILAVGA-GPGTLDVP-G-VNAKGVFDHATLVEEL-----------------DYEPGSTVVVVGGSKTAVEYGCF  232 (523)
T ss_dssp             EEBSCEEECCCE-ECCCCCST-T-TTSBTEEEHHHHHHHC-----------------CSCCCSEEEEECCSHHHHHHHHH
T ss_pred             EEeCEEEECCCC-CCCCCCCC-C-cccCcEeeHHHHHHHH-----------------HhcCCCeEEEECCCHHHHHHHHH
Confidence            468999999998 48888999 5 5667788888776221                 2234 789999999999999999


Q ss_pred             HHHcCCceEEEEEeecCCcCCCCHHHH-----HHHHHcCcEEEeCCcceEEEcc-CCcEEEEEEEEeeecCCCCeecCCC
Q psy16200         88 ALRCGANKVLVVFRKGCTNIRAVPEEV-----QLAWEEKCEFLPFMSPVQVDVK-DNKIAGMQFNRTEQNEKGEWVEDEE  161 (183)
Q Consensus        88 l~~~G~~~V~lv~r~~~~~~~~~~~~~-----~~~~~~gv~~~~~~~~~~i~~~-~~~v~~v~~~~~~~~~~~~~~~~~g  161 (183)
                      |.++|. +|+++++.+.. ++..+.++     +.+.+.||+|++++.+.++..+ +++++++.+.-           .+|
T Consensus       233 l~~~G~-~Vtlv~~~~~~-l~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~v~~~~v~~-----------~~G  299 (523)
T 1mo9_A          233 FNATGR-RTVMLVRTEPL-KLIKDNETRAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMT-----------PNG  299 (523)
T ss_dssp             HHHTTC-EEEEECSSCTT-TTCCSHHHHHHHHHHHHHTTCEEESSCEEEEEEECTTSBEEEEEEEE-----------TTE
T ss_pred             HHHcCC-eEEEEEecCcc-cccccHHHHHHHHHHHHhCCcEEEECCEEEEEEEcCCCceEEEEEEE-----------CCC
Confidence            999997 79999998754 55444332     3456789999999999999763 34453333321           233


Q ss_pred             ceEEEECCEEEEcccccccCC
Q psy16200        162 QRIKLKANYIISAFGSTLLDN  182 (183)
Q Consensus       162 ~~~~i~~D~Vi~a~G~~p~~~  182 (183)
                       +.+++||.||+|+|++||++
T Consensus       300 -~~~i~aD~Vv~A~G~~p~~~  319 (523)
T 1mo9_A          300 -EMRIETDFVFLGLGEQPRSA  319 (523)
T ss_dssp             -EEEEECSCEEECCCCEECCH
T ss_pred             -cEEEEcCEEEECcCCccCCc
Confidence             24799999999999999974

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=99.73  E-value=3.3e-17  Score=139.67  Aligned_cols=134  Identities=18%  Similarity=0.139  Sum_probs=100.6

Q ss_pred             CCCCEEEEccCCCCCccc-CCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHH
Q psy16200          9 DGYTAIFIGIGKPNANVI-PIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATS   87 (183)
Q Consensus         9 ~~~davviATGa~~p~~l-~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~   87 (183)
                      ..||++|||||+ .|+.| ++| | .+  .++++.+++..                  ...+++|+|||||++|+|+|..
T Consensus       147 ~~~d~lviAtGs-~p~~p~~i~-g-~~--~~~~~~~~~~l------------------~~~~~~vvViGgG~ig~E~A~~  203 (479)
T 2hqm_A          147 YSANHILVATGG-KAIFPENIP-G-FE--LGTDSDGFFRL------------------EEQPKKVVVVGAGYIGIELAGV  203 (479)
T ss_dssp             EEEEEEEECCCE-EECCCTTST-T-GG--GSBCHHHHHHC------------------SSCCSEEEEECSSHHHHHHHHH
T ss_pred             EEeCEEEEcCCC-CCCCCCCCC-C-cc--cccchHHHhcc------------------cccCCeEEEECCCHHHHHHHHH
Confidence            468999999998 48888 899 5 33  35666666541                  2356889999999999999999


Q ss_pred             HHHcCCceEEEEEeecCCcCCCCHHHH-----HHHHHcCcEEEeCCcceEEEccCCc-EEEEEEEEeeecCCCCeecCCC
Q psy16200         88 ALRCGANKVLVVFRKGCTNIRAVPEEV-----QLAWEEKCEFLPFMSPVQVDVKDNK-IAGMQFNRTEQNEKGEWVEDEE  161 (183)
Q Consensus        88 l~~~G~~~V~lv~r~~~~~~~~~~~~~-----~~~~~~gv~~~~~~~~~~i~~~~~~-v~~v~~~~~~~~~~~~~~~~~g  161 (183)
                      |.++|. +|+++++.++. ++..+.++     +.+.+.||++++++.+.++..+++. +..+++             .+|
T Consensus       204 l~~~g~-~Vtlv~~~~~~-l~~~d~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~~v~~-------------~~G  268 (479)
T 2hqm_A          204 FHGLGS-ETHLVIRGETV-LRKFDECIQNTITDHYVKEGINVHKLSKIVKVEKNVETDKLKIHM-------------NDS  268 (479)
T ss_dssp             HHHTTC-EEEEECSSSSS-CTTSCHHHHHHHHHHHHHHTCEEECSCCEEEEEECC-CCCEEEEE-------------TTS
T ss_pred             HHHcCC-ceEEEEeCCcc-ccccCHHHHHHHHHHHHhCCeEEEeCCEEEEEEEcCCCcEEEEEE-------------CCC
Confidence            999997 79999998764 55544332     2456789999999999999764332 222433             234


Q ss_pred             ceEEEECCEEEEcccccccC
Q psy16200        162 QRIKLKANYIISAFGSTLLD  181 (183)
Q Consensus       162 ~~~~i~~D~Vi~a~G~~p~~  181 (183)
                      + .+++||.||+|+|++||+
T Consensus       269 ~-~~i~~D~vv~a~G~~p~~  287 (479)
T 2hqm_A          269 K-SIDDVDELIWTIGRKSHL  287 (479)
T ss_dssp             C-EEEEESEEEECSCEEECC
T ss_pred             c-EEEEcCEEEECCCCCCcc
Confidence            2 479999999999999997

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=99.73  E-value=3.5e-17  Score=140.02  Aligned_cols=135  Identities=15%  Similarity=0.178  Sum_probs=101.3

Q ss_pred             hCCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHH
Q psy16200          8 KDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATS   87 (183)
Q Consensus         8 ~~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~   87 (183)
                      ...||++|||||+ .|+.|++| | .+  .++++.+++.                  ....+++++|||||++|+|+|..
T Consensus       149 ~~~~d~lviAtGs-~p~~p~i~-g-~~--~~~~~~~~~~------------------~~~~~~~vvViGgG~ig~E~A~~  205 (490)
T 1fec_A          149 TLDTEYILLATGS-WPQHLGIE-G-DD--LCITSNEAFY------------------LDEAPKRALCVGGGYISIEFAGI  205 (490)
T ss_dssp             EEEEEEEEECCCE-EECCCCSB-T-GG--GCBCHHHHTT------------------CSSCCSEEEEECSSHHHHHHHHH
T ss_pred             EEEcCEEEEeCCC-CCCCCCCC-C-cc--ceecHHHHhh------------------hhhcCCeEEEECCCHHHHHHHHH
Confidence            3569999999998 48888899 5 33  4666655542                  12356789999999999999999


Q ss_pred             HHHc---CCceEEEEEeecCCcCCCCHHHH-----HHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecC
Q psy16200         88 ALRC---GANKVLVVFRKGCTNIRAVPEEV-----QLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVED  159 (183)
Q Consensus        88 l~~~---G~~~V~lv~r~~~~~~~~~~~~~-----~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~  159 (183)
                      |.++   |. +|++++|+++. ++..+.++     +.+.+.||+|++++.+.++..+++....+++             .
T Consensus       206 l~~~~~~g~-~Vtlv~~~~~~-l~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~v~~-------------~  270 (490)
T 1fec_A          206 FNAYKARGG-QVDLAYRGDMI-LRGFDSELRKQLTEQLRANGINVRTHENPAKVTKNADGTRHVVF-------------E  270 (490)
T ss_dssp             HHHHSCTTC-EEEEEESSSSS-STTSCHHHHHHHHHHHHHTTEEEEETCCEEEEEECTTSCEEEEE-------------T
T ss_pred             HHhhccCcC-eEEEEEcCCCc-ccccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCEEEEEE-------------C
Confidence            9999   97 79999998764 55544332     3456789999999999999764332222333             2


Q ss_pred             CCceEEEECCEEEEcccccccCC
Q psy16200        160 EEQRIKLKANYIISAFGSTLLDN  182 (183)
Q Consensus       160 ~g~~~~i~~D~Vi~a~G~~p~~~  182 (183)
                      +|+  +++||.||+|+|++||++
T Consensus       271 ~G~--~i~~D~vv~a~G~~p~~~  291 (490)
T 1fec_A          271 SGA--EADYDVVMLAIGRVPRSQ  291 (490)
T ss_dssp             TSC--EEEESEEEECSCEEESCT
T ss_pred             CCc--EEEcCEEEEccCCCcCcc
Confidence            343  689999999999999975

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=99.73  E-value=4.2e-17  Score=138.04  Aligned_cols=135  Identities=18%  Similarity=0.173  Sum_probs=101.7

Q ss_pred             CCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHHH
Q psy16200          9 DGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSA   88 (183)
Q Consensus         9 ~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~l   88 (183)
                      ..||++|||||+ .|+.|+++ | .+..+++++.+++.                  ....+++|+|||||++|+|+|..|
T Consensus       128 ~~~d~lviAtG~-~p~~~~~~-g-~~~~~v~~~~~~~~------------------~~~~~~~vvIiGgG~~g~e~A~~l  186 (455)
T 2yqu_A          128 LEARYILIATGS-APLIPPWA-Q-VDYERVVTSTEALS------------------FPEVPKRLIVVGGGVIGLELGVVW  186 (455)
T ss_dssp             EEEEEEEECCCE-EECCCTTB-C-CCSSSEECHHHHTC------------------CSSCCSEEEEECCSHHHHHHHHHH
T ss_pred             EEecEEEECCCC-CCCCCCCC-C-CCcCcEechHHhhc------------------cccCCCeEEEECCCHHHHHHHHHH
Confidence            468999999998 48888888 5 45556777665542                  123467899999999999999999


Q ss_pred             HHcCCceEEEEEeecCCcCCCCHHHH-----HHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCce
Q psy16200         89 LRCGANKVLVVFRKGCTNIRAVPEEV-----QLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQR  163 (183)
Q Consensus        89 ~~~G~~~V~lv~r~~~~~~~~~~~~~-----~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~  163 (183)
                      .++|. +|+++++++.. +|..+.++     +.+.+.||++++++.+.++..+++.+. +++             .++  
T Consensus       187 ~~~g~-~V~lv~~~~~~-l~~~~~~~~~~l~~~l~~~Gv~i~~~~~V~~i~~~~~~v~-v~~-------------~~g--  248 (455)
T 2yqu_A          187 HRLGA-EVIVLEYMDRI-LPTMDLEVSRAAERVFKKQGLTIRTGVRVTAVVPEAKGAR-VEL-------------EGG--  248 (455)
T ss_dssp             HHTTC-EEEEECSSSSS-CTTSCHHHHHHHHHHHHHHTCEEECSCCEEEEEEETTEEE-EEE-------------TTS--
T ss_pred             HHcCC-EEEEEecCCcc-ccccCHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCEEE-EEE-------------CCC--
Confidence            99997 79999998754 55543332     245678999999999999976444432 322             123  


Q ss_pred             EEEECCEEEEcccccccCC
Q psy16200        164 IKLKANYIISAFGSTLLDN  182 (183)
Q Consensus       164 ~~i~~D~Vi~a~G~~p~~~  182 (183)
                      .++++|.||+|+|++||++
T Consensus       249 ~~i~~D~vv~A~G~~p~~~  267 (455)
T 2yqu_A          249 EVLEADRVLVAVGRRPYTE  267 (455)
T ss_dssp             CEEEESEEEECSCEEECCT
T ss_pred             eEEEcCEEEECcCCCcCCC
Confidence            3689999999999999874

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=99.73  E-value=6.1e-17  Score=135.47  Aligned_cols=136  Identities=15%  Similarity=0.195  Sum_probs=97.9

Q ss_pred             CCCCEEEEccCCCCCcccCC-CCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHH
Q psy16200          9 DGYTAIFIGIGKPNANVIPI-FQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATS   87 (183)
Q Consensus         9 ~~~davviATGa~~p~~l~i-~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~   87 (183)
                      ..||++|||||+ .|+.|++ | | .+ +++++..+.-......            .....+++|+|||||++|+|+|..
T Consensus       100 ~~~d~lviAtG~-~~~~~~i~~-G-~~-~~v~~~~~~~~~~~l~------------~~~~~~~~vvViGgG~~g~E~A~~  163 (408)
T 2gqw_A          100 LPYGTLVLATGA-APRALPTLQ-G-AT-MPVHTLRTLEDARRIQ------------AGLRPQSRLLIVGGGVIGLELAAT  163 (408)
T ss_dssp             EECSEEEECCCE-EECCCGGGT-T-CS-SCEEECCSHHHHHHHH------------TTCCTTCEEEEECCSHHHHHHHHH
T ss_pred             EECCEEEECCCC-CCCCCCccC-C-CC-CcEEEECCHHHHHHHH------------HHhhcCCeEEEECCCHHHHHHHHH
Confidence            469999999999 4888899 9 5 45 6776433221111110            112235789999999999999999


Q ss_pred             HHHcCCceEEEEEeecCCcCCC-CHHHH-----HHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCC
Q psy16200         88 ALRCGANKVLVVFRKGCTNIRA-VPEEV-----QLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEE  161 (183)
Q Consensus        88 l~~~G~~~V~lv~r~~~~~~~~-~~~~~-----~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g  161 (183)
                      |.++|. +|+++++++.. ++. .+.++     +.+.+.||++++++.+.++. + +   .+++             .+|
T Consensus       164 l~~~g~-~Vtlv~~~~~~-l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~-~-~---~v~~-------------~~g  223 (408)
T 2gqw_A          164 ARTAGV-HVSLVETQPRL-MSRAAPATLADFVARYHAAQGVDLRFERSVTGSV-D-G---VVLL-------------DDG  223 (408)
T ss_dssp             HHHTTC-EEEEEESSSSS-STTTSCHHHHHHHHHHHHHTTCEEEESCCEEEEE-T-T---EEEE-------------TTS
T ss_pred             HHhCCC-EEEEEEeCCcc-cccccCHHHHHHHHHHHHHcCcEEEeCCEEEEEE-C-C---EEEE-------------CCC
Confidence            999997 79999998764 442 33322     34577899999999999987 3 3   2333             233


Q ss_pred             ceEEEECCEEEEcccccccCC
Q psy16200        162 QRIKLKANYIISAFGSTLLDN  182 (183)
Q Consensus       162 ~~~~i~~D~Vi~a~G~~p~~~  182 (183)
                        .+++||.||+|+|++||++
T Consensus       224 --~~i~~D~vi~a~G~~p~~~  242 (408)
T 2gqw_A          224 --TRIAADMVVVGIGVLANDA  242 (408)
T ss_dssp             --CEEECSEEEECSCEEECCH
T ss_pred             --CEEEcCEEEECcCCCccHH
Confidence              3689999999999999863

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=99.73  E-value=5e-17  Score=134.69  Aligned_cols=140  Identities=14%  Similarity=0.112  Sum_probs=102.5

Q ss_pred             CCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHHH
Q psy16200          9 DGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSA   88 (183)
Q Consensus         9 ~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~l   88 (183)
                      ..||++|||||+ .|+.|++| | .+.+++++..++.......            .....+++++|||||++|+|+|..|
T Consensus       100 ~~~d~lviAtG~-~p~~p~i~-g-~~~~~v~~~~~~~~~~~~~------------~~~~~~~~v~ViGgG~~g~e~A~~l  164 (384)
T 2v3a_A          100 VRYRDLVLAWGA-EPIRVPVE-G-DAQDALYPINDLEDYARFR------------QAAAGKRRVLLLGAGLIGCEFANDL  164 (384)
T ss_dssp             EECSEEEECCCE-EECCCCCB-S-TTTTCEEECSSHHHHHHHH------------HHHTTCCEEEEECCSHHHHHHHHHH
T ss_pred             EECCEEEEeCCC-CcCCCCCC-C-cCcCCEEEECCHHHHHHHH------------HhhccCCeEEEECCCHHHHHHHHHH
Confidence            469999999999 48888999 5 5556788777665432210            0012357899999999999999999


Q ss_pred             HHcCCceEEEEEeecCCcCCCC-HHH-----HHHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCc
Q psy16200         89 LRCGANKVLVVFRKGCTNIRAV-PEE-----VQLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQ  162 (183)
Q Consensus        89 ~~~G~~~V~lv~r~~~~~~~~~-~~~-----~~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~  162 (183)
                      .++|. +|+++++++.. ++.. +.+     .+.+.+.|+++++++.+.++..+++.+. +++             .+| 
T Consensus       165 ~~~g~-~Vtlv~~~~~~-~~~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~-v~~-------------~~g-  227 (384)
T 2v3a_A          165 SSGGY-QLDVVAPCEQV-MPGLLHPAAAKAVQAGLEGLGVRFHLGPVLASLKKAGEGLE-AHL-------------SDG-  227 (384)
T ss_dssp             HHTTC-EEEEEESSSSS-STTTSCHHHHHHHHHHHHTTTCEEEESCCEEEEEEETTEEE-EEE-------------TTS-
T ss_pred             HhCCC-eEEEEecCcch-hhcccCHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCEEE-EEE-------------CCC-
Confidence            99997 79999998654 4432 222     2345678999999999999976444332 333             233 


Q ss_pred             eEEEECCEEEEcccccccC
Q psy16200        163 RIKLKANYIISAFGSTLLD  181 (183)
Q Consensus       163 ~~~i~~D~Vi~a~G~~p~~  181 (183)
                       .+++||.||+|+|+.||+
T Consensus       228 -~~i~~d~vv~a~G~~p~~  245 (384)
T 2v3a_A          228 -EVIPCDLVVSAVGLRPRT  245 (384)
T ss_dssp             -CEEEESEEEECSCEEECC
T ss_pred             -CEEECCEEEECcCCCcCH
Confidence             368999999999999986

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=99.73  E-value=3.8e-17  Score=138.32  Aligned_cols=133  Identities=18%  Similarity=0.186  Sum_probs=100.3

Q ss_pred             CCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHHH
Q psy16200          9 DGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSA   88 (183)
Q Consensus         9 ~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~l   88 (183)
                      ..||++|||||+ .|+.|++| | .+  .++++.+++..                  ...+++|+|||||++|+|+|..|
T Consensus       130 ~~~d~lviAtGs-~p~~p~i~-g-~~--~~~~~~~~~~~------------------~~~~~~vvViGgG~~g~e~A~~l  186 (450)
T 1ges_A          130 ITADHILIATGG-RPSHPDIP-G-VE--YGIDSDGFFAL------------------PALPERVAVVGAGYIGVELGGVI  186 (450)
T ss_dssp             EEEEEEEECCCE-EECCCCST-T-GG--GSBCHHHHHHC------------------SSCCSEEEEECCSHHHHHHHHHH
T ss_pred             EEeCEEEECCCC-CCCCCCCC-C-cc--ceecHHHhhhh------------------hhcCCeEEEECCCHHHHHHHHHH
Confidence            468999999998 48888899 5 33  46666666531                  23468899999999999999999


Q ss_pred             HHcCCceEEEEEeecCCcCCCCHHHH-----HHHHHcCcEEEeCCcceEEEccCCc-EEEEEEEEeeecCCCCeecCCCc
Q psy16200         89 LRCGANKVLVVFRKGCTNIRAVPEEV-----QLAWEEKCEFLPFMSPVQVDVKDNK-IAGMQFNRTEQNEKGEWVEDEEQ  162 (183)
Q Consensus        89 ~~~G~~~V~lv~r~~~~~~~~~~~~~-----~~~~~~gv~~~~~~~~~~i~~~~~~-v~~v~~~~~~~~~~~~~~~~~g~  162 (183)
                      +++|. +|+++++++.. ++..+.++     +.+.+.||++++++.+.++..+++. +. +++             .+|+
T Consensus       187 ~~~g~-~Vtlv~~~~~~-l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~-v~~-------------~~g~  250 (450)
T 1ges_A          187 NGLGA-KTHLFEMFDAP-LPSFDPMISETLVEVMNAEGPQLHTNAIPKAVVKNTDGSLT-LEL-------------EDGR  250 (450)
T ss_dssp             HHTTC-EEEEECSSSSS-STTSCHHHHHHHHHHHHHHSCEEECSCCEEEEEECTTSCEE-EEE-------------TTSC
T ss_pred             HhcCC-EEEEEEeCCch-hhhhhHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCcEEE-EEE-------------CCCc
Confidence            99997 79999988654 44443332     3456789999999999999764333 32 333             2343


Q ss_pred             eEEEECCEEEEcccccccCC
Q psy16200        163 RIKLKANYIISAFGSTLLDN  182 (183)
Q Consensus       163 ~~~i~~D~Vi~a~G~~p~~~  182 (183)
                        +++||.||+|+|++||++
T Consensus       251 --~i~~D~vv~a~G~~p~~~  268 (450)
T 1ges_A          251 --SETVDCLIWAIGREPAND  268 (450)
T ss_dssp             --EEEESEEEECSCEEESCT
T ss_pred             --EEEcCEEEECCCCCcCCC
Confidence              689999999999999975

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=99.73  E-value=3.1e-17  Score=132.10  Aligned_cols=140  Identities=11%  Similarity=0.080  Sum_probs=102.8

Q ss_pred             CCCEEEEccCCCCCcccCCCCCCccC--CCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHH
Q psy16200         10 GYTAIFIGIGKPNANVIPIFQGLTEE--MGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATS   87 (183)
Q Consensus        10 ~~davviATGa~~p~~l~i~gg~~~~--~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~   87 (183)
                      .||.+|+|||++ |+.|++| |..++  .++++.. ...   .              ....+++|+|||||++|+|+|..
T Consensus       114 ~~~~li~AtG~~-~~~~~i~-g~~~~~~~~~~~~~-~~~---~--------------~~~~~~~v~viG~G~~g~e~a~~  173 (319)
T 3cty_A          114 HAKYVIITTGTT-HKHLGVK-GESEYFGKGTSYCS-TCD---G--------------YLFKGKRVVTIGGGNSGAIAAIS  173 (319)
T ss_dssp             EEEEEEECCCEE-ECCCCCB-TTTTTBTTTEESCH-HHH---G--------------GGGBTSEEEEECCSHHHHHHHHH
T ss_pred             EeCEEEECCCCC-cccCCCC-ChHHhCCceEEEEE-ecc---h--------------hhcCCCeEEEECCCHHHHHHHHH
Confidence            589999999984 8888888 53222  3443221 111   1              12234679999999999999999


Q ss_pred             HHHcCCceEEEEEeecCCcCCCCHHHHHHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCceEEEE
Q psy16200         88 ALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLK  167 (183)
Q Consensus        88 l~~~G~~~V~lv~r~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~  167 (183)
                      |++.|. +|++++|++.  +.......+.+.+.||++++++.+.++..+++++.++++...          .+|+..+++
T Consensus       174 l~~~g~-~V~~i~~~~~--~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~----------~~g~~~~i~  240 (319)
T 3cty_A          174 MSEYVK-NVTIIEYMPK--YMCENAYVQEIKKRNIPYIMNAQVTEIVGDGKKVTGVKYKDR----------TTGEEKLIE  240 (319)
T ss_dssp             HTTTBS-EEEEECSSSS--CCSCHHHHHHHHHTTCCEECSEEEEEEEESSSSEEEEEEEET----------TTCCEEEEC
T ss_pred             HHhhCC-cEEEEEcCCc--cCCCHHHHHHHhcCCcEEEcCCeEEEEecCCceEEEEEEEEc----------CCCceEEEe
Confidence            999986 7999998754  334454556677899999999999999865555766766421          245667899


Q ss_pred             CCEEEEcccccccCC
Q psy16200        168 ANYIISAFGSTLLDN  182 (183)
Q Consensus       168 ~D~Vi~a~G~~p~~~  182 (183)
                      ||.||+|+|+.||++
T Consensus       241 ~D~vi~a~G~~p~~~  255 (319)
T 3cty_A          241 TDGVFIYVGLIPQTS  255 (319)
T ss_dssp             CSEEEECCCEEECCG
T ss_pred             cCEEEEeeCCccChH
Confidence            999999999999864

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=99.73  E-value=1.4e-17  Score=141.42  Aligned_cols=141  Identities=13%  Similarity=0.133  Sum_probs=104.1

Q ss_pred             CCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHHH
Q psy16200          9 DGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSA   88 (183)
Q Consensus         9 ~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~l   88 (183)
                      ..||++|||||+ .|+.|++| | .+  +++++.+++....              .....+++|+|||||++|+|+|..|
T Consensus       131 ~~~d~lviAtG~-~p~~p~i~-G-~~--~~~t~~~~~~~~~--------------~l~~~~~~vvViGgG~~g~e~A~~l  191 (466)
T 3l8k_A          131 AETRYMIIASGA-ETAKLRLP-G-VE--YCLTSDDIFGYKT--------------SFRKLPQDMVIIGAGYIGLEIASIF  191 (466)
T ss_dssp             EEEEEEEECCCE-EECCCCCT-T-GG--GSBCHHHHHSTTC--------------SCCSCCSEEEEECCSHHHHHHHHHH
T ss_pred             EecCEEEECCCC-CccCCCCC-C-cc--ceEeHHHHHHHHH--------------HHhhCCCeEEEECCCHHHHHHHHHH
Confidence            468999999998 58889999 5 44  6888777663210              1234568899999999999999999


Q ss_pred             HHcCCceEEEEEeecCCcCCCC-HHHHHH-HH-HcCcEEEeCCcceEEEccC-CcEEEEEEEEeeecCCCCeecCCCceE
Q psy16200         89 LRCGANKVLVVFRKGCTNIRAV-PEEVQL-AW-EEKCEFLPFMSPVQVDVKD-NKIAGMQFNRTEQNEKGEWVEDEEQRI  164 (183)
Q Consensus        89 ~~~G~~~V~lv~r~~~~~~~~~-~~~~~~-~~-~~gv~~~~~~~~~~i~~~~-~~v~~v~~~~~~~~~~~~~~~~~g~~~  164 (183)
                      .++|. +|++++|+++. ++.. ++++.. +. ...|+++++..+.++..++ +.+. +++.           ..+|+..
T Consensus       192 ~~~g~-~Vtlv~~~~~~-l~~~~d~~~~~~l~~~l~v~i~~~~~v~~i~~~~~~~v~-v~~~-----------~~~G~~~  257 (466)
T 3l8k_A          192 RLMGV-QTHIIEMLDRA-LITLEDQDIVNTLLSILKLNIKFNSPVTEVKKIKDDEYE-VIYS-----------TKDGSKK  257 (466)
T ss_dssp             HHTTC-EEEEECSSSSS-CTTSCCHHHHHHHHHHHCCCEECSCCEEEEEEEETTEEE-EEEC-----------CTTSCCE
T ss_pred             HHcCC-EEEEEEeCCcC-CCCCCCHHHHHHHHhcCEEEEEECCEEEEEEEcCCCcEE-EEEE-----------ecCCceE
Confidence            99997 79999998764 5544 444432 21 2239999999999997644 5553 4331           0145567


Q ss_pred             EEECCEEEEcccccccCC
Q psy16200        165 KLKANYIISAFGSTLLDN  182 (183)
Q Consensus       165 ~i~~D~Vi~a~G~~p~~~  182 (183)
                      ++++|.||+|+|++||++
T Consensus       258 ~i~~D~vi~a~G~~p~~~  275 (466)
T 3l8k_A          258 SIFTNSVVLAAGRRPVIP  275 (466)
T ss_dssp             EEEESCEEECCCEEECCC
T ss_pred             EEEcCEEEECcCCCcccc
Confidence            899999999999999975

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=99.72  E-value=2.9e-17  Score=138.44  Aligned_cols=138  Identities=14%  Similarity=0.199  Sum_probs=101.3

Q ss_pred             CCCCEEEEccCCCCCcccCCCCCCccCCC---cee---hhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHH
Q psy16200          9 DGYTAIFIGIGKPNANVIPIFQGLTEEMG---FYT---SKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAF   82 (183)
Q Consensus         9 ~~~davviATGa~~p~~l~i~gg~~~~~~---V~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~   82 (183)
                      ..||.+|+|||+ .|+.|++| | .+.++   |++   ..+++....               ....+++|+|||||++|+
T Consensus       101 ~~~d~lviAtG~-~p~~~~i~-G-~~~~~~~~v~~~~~~~d~~~l~~---------------~l~~~~~vvViGgG~~g~  162 (431)
T 1q1r_A          101 LDYDRLVLATGG-RPRPLPVA-S-GAVGKANNFRYLRTLEDAECIRR---------------QLIADNRLVVIGGGYIGL  162 (431)
T ss_dssp             EECSEEEECCCE-EECCCGGG-T-THHHHSTTEEESSSHHHHHHHHH---------------TCCTTCEEEEECCSHHHH
T ss_pred             EECCEEEEcCCC-CccCCCCC-C-cccCCCceEEEECCHHHHHHHHH---------------HhhcCCeEEEECCCHHHH
Confidence            469999999999 58888999 5 45555   654   233322211               122357899999999999


Q ss_pred             HHHHHHHHcCCceEEEEEeecCCcCCC-CHHHH-----HHHHHcCcEEEeCCcceEEEc--cCCcEEEEEEEEeeecCCC
Q psy16200         83 DCATSALRCGANKVLVVFRKGCTNIRA-VPEEV-----QLAWEEKCEFLPFMSPVQVDV--KDNKIAGMQFNRTEQNEKG  154 (183)
Q Consensus        83 e~A~~l~~~G~~~V~lv~r~~~~~~~~-~~~~~-----~~~~~~gv~~~~~~~~~~i~~--~~~~v~~v~~~~~~~~~~~  154 (183)
                      |+|..|.++|. +|+++++++.. ++. .+.++     +.+.+.||++++++.+.++..  +++++..+++         
T Consensus       163 E~A~~l~~~G~-~Vtlv~~~~~~-l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~---------  231 (431)
T 1q1r_A          163 EVAATAIKANM-HVTLLDTAARV-LERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLC---------  231 (431)
T ss_dssp             HHHHHHHHTTC-EEEEECSSSST-TTTTSCHHHHHHHHHHHHHHTCEEECSCCEEEEEECTTTCCEEEEEE---------
T ss_pred             HHHHHHHhCCC-EEEEEEeCCcc-ccchhhHHHHHHHHHHHHhCCeEEEeCCEEEEEEeccCCCcEEEEEe---------
Confidence            99999999997 79999988654 432 33222     345678999999999999986  4566655554         


Q ss_pred             CeecCCCceEEEECCEEEEcccccccC
Q psy16200        155 EWVEDEEQRIKLKANYIISAFGSTLLD  181 (183)
Q Consensus       155 ~~~~~~g~~~~i~~D~Vi~a~G~~p~~  181 (183)
                          .+|  .+++||.||+|+|++||+
T Consensus       232 ----~~G--~~i~~D~Vv~a~G~~p~~  252 (431)
T 1q1r_A          232 ----EDG--TRLPADLVIAGIGLIPNC  252 (431)
T ss_dssp             ----TTS--CEEECSEEEECCCEEECC
T ss_pred             ----CCC--CEEEcCEEEECCCCCcCc
Confidence                233  368999999999999986

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=99.72  E-value=8.3e-17  Score=143.77  Aligned_cols=155  Identities=12%  Similarity=0.015  Sum_probs=109.0

Q ss_pred             ChhhhhhCCCCEEEEccCCCC-------CcccCCCCCCcc--CCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceE
Q psy16200          2 PTLKLRKDGYTAIFIGIGKPN-------ANVIPIFQGLTE--EMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTV   72 (183)
Q Consensus         2 ~~~~l~~~~~davviATGa~~-------p~~l~i~gg~~~--~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V   72 (183)
                      +.++.....||+||||||+..       |+.|++| | .+  .++++++.+++..                 ....+++|
T Consensus       471 ~~~~~~~~~~d~vviAtG~~~~~~~~~~p~~~~ip-G-~~~~~~~v~~~~~~l~~-----------------~~~~gk~V  531 (729)
T 1o94_A          471 TADDVLQYGADKVIIATGARWNTDGTNCLTHDPIP-G-ADASLPDQLTPEQVMDG-----------------KKKIGKRV  531 (729)
T ss_dssp             CHHHHHTSCCSEEEECCCEEECSSCCCTTTSSCCT-T-CCTTSTTEECHHHHHHC-----------------CSCCCSEE
T ss_pred             ehhhccccCCCEEEEcCCCCcccccccCccCCCCC-C-ccccCCCEEEHHHHhcC-----------------CCCCCCeE
Confidence            456666778999999999841       4667899 5 45  5689988887652                 12345689


Q ss_pred             EEEc--CChhHHHHHHHHHHcCCceEEEEEeecCC----cCCCCHHHH-HHHHHcCcEEEeCCcceEEEccCCcEEEEEE
Q psy16200         73 IVLG--AGDTAFDCATSALRCGANKVLVVFRKGCT----NIRAVPEEV-QLAWEEKCEFLPFMSPVQVDVKDNKIAGMQF  145 (183)
Q Consensus        73 vViG--gG~~g~e~A~~l~~~G~~~V~lv~r~~~~----~~~~~~~~~-~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~  145 (183)
                      +|||  ||++|+|+|..|++.|. +|++++|++ .    .++.....+ +.+.++||++++++.+.++..  +.+.   +
T Consensus       532 vVIG~GgG~~g~e~A~~l~~~G~-~Vtlv~~~~-l~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~--~~v~---~  604 (729)
T 1o94_A          532 VILNADTYFMAPSLAEKLATAGH-EVTIVSGVH-LANYMHFTLEYPNMMRRLHELHVEELGDHFCSRIEP--GRME---I  604 (729)
T ss_dssp             EEEECCCSSHHHHHHHHHHHTTC-EEEEEESSC-TTHHHHHTTCHHHHHHHHHHTTCEEECSEEEEEEET--TEEE---E
T ss_pred             EEEcCCCCchHHHHHHHHHHcCC-EEEEEeccc-ccccccccccHHHHHHHHHhCCCEEEcCcEEEEEEC--CeEE---E
Confidence            9999  99999999999999997 799999976 2    122222333 446788999999999999974  2332   2


Q ss_pred             EEeeecC--------CCCeecCCCceEEEECCEEEEcccccccCC
Q psy16200        146 NRTEQNE--------KGEWVEDEEQRIKLKANYIISAFGSTLLDN  182 (183)
Q Consensus       146 ~~~~~~~--------~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~  182 (183)
                      .....+.        +......++++++++||+||+|+|++||++
T Consensus       605 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~aD~Vv~a~G~~p~~~  649 (729)
T 1o94_A          605 YNIWGDGSKRTYRGPGVSPRDANTSHRWIEFDSLVLVTGRHSECT  649 (729)
T ss_dssp             EETTCSCSCCCCCCTTSCSSCCCCCCEEEECSEEEEESCEEECCH
T ss_pred             EEecCCceEEecccccccccccCCcceeeeCCEEEECCCCCCChH
Confidence            2110000        001112345667899999999999999863

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=99.72  E-value=7.2e-17  Score=137.31  Aligned_cols=139  Identities=17%  Similarity=0.208  Sum_probs=100.1

Q ss_pred             CCCCEEEEccCCCCCcccCCCCCCccCC--CceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHH
Q psy16200          9 DGYTAIFIGIGKPNANVIPIFQGLTEEM--GFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCAT   86 (183)
Q Consensus         9 ~~~davviATGa~~p~~l~i~gg~~~~~--~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~   86 (183)
                      ..||+||+|||++ |+  ++| | .+..  .++++.+++.                  ....+++|+|||||++|+|+|.
T Consensus       144 i~~d~lViAtGs~-p~--~~~-g-~~~~~~~v~~~~~~~~------------------~~~~~~~vvViGgG~~g~e~A~  200 (478)
T 1v59_A          144 LDVKNIIVATGSE-VT--PFP-G-IEIDEEKIVSSTGALS------------------LKEIPKRLTIIGGGIIGLEMGS  200 (478)
T ss_dssp             EEEEEEEECCCEE-EC--CCT-T-CCCCSSSEECHHHHTT------------------CSSCCSEEEEECCSHHHHHHHH
T ss_pred             EEeCEEEECcCCC-CC--CCC-C-CCCCCceEEcHHHHHh------------------hhccCceEEEECCCHHHHHHHH
Confidence            4689999999985 64  355 3 2333  4666665542                  1235688999999999999999


Q ss_pred             HHHHcCCceEEEEEeecCCcCCCCHHHH-----HHHHHcCcEEEeCCcceEEEcc-CCcEEEEEEEEeeecCCCCeecCC
Q psy16200         87 SALRCGANKVLVVFRKGCTNIRAVPEEV-----QLAWEEKCEFLPFMSPVQVDVK-DNKIAGMQFNRTEQNEKGEWVEDE  160 (183)
Q Consensus        87 ~l~~~G~~~V~lv~r~~~~~~~~~~~~~-----~~~~~~gv~~~~~~~~~~i~~~-~~~v~~v~~~~~~~~~~~~~~~~~  160 (183)
                      .|+++|. +|++++|++.. ++..+.++     +.+.+.||++++++.+.++..+ ++....+++.+          ..+
T Consensus       201 ~l~~~g~-~Vtlv~~~~~~-l~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~----------~~~  268 (478)
T 1v59_A          201 VYSRLGS-KVTVVEFQPQI-GASMDGEVAKATQKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVED----------TKT  268 (478)
T ss_dssp             HHHHTTC-EEEEECSSSSS-SSSSCHHHHHHHHHHHHHTTCEEECSEEEEEEEEETTTTEEEEEEEE----------TTT
T ss_pred             HHHHcCC-EEEEEEeCCcc-ccccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEecCCCeEEEEEEE----------cCC
Confidence            9999997 79999998764 55443332     3456789999999999999751 23333344431          023


Q ss_pred             CceEEEECCEEEEcccccccCC
Q psy16200        161 EQRIKLKANYIISAFGSTLLDN  182 (183)
Q Consensus       161 g~~~~i~~D~Vi~a~G~~p~~~  182 (183)
                      +...+++||.||+|+|++||++
T Consensus       269 g~~~~~~~D~vv~a~G~~p~~~  290 (478)
T 1v59_A          269 NKQENLEAEVLLVAVGRRPYIA  290 (478)
T ss_dssp             TEEEEEEESEEEECSCEEECCT
T ss_pred             CCceEEECCEEEECCCCCcCCC
Confidence            4456899999999999999985

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=99.72  E-value=6e-17  Score=138.69  Aligned_cols=135  Identities=13%  Similarity=0.189  Sum_probs=103.5

Q ss_pred             CCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHHH
Q psy16200          9 DGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSA   88 (183)
Q Consensus         9 ~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~l   88 (183)
                      ..||.+|+|||+ .|+.|++| | .+..++++..+++.                  ....+++++|||||++|+|+|..|
T Consensus       143 ~~~d~lviATGs-~p~~p~i~-g-~~~~~v~~~~~~~~------------------~~~~~~~vvViGgG~ig~E~A~~l  201 (499)
T 1xdi_A          143 HEADVVLVATGA-SPRILPSA-Q-PDGERILTWRQLYD------------------LDALPDHLIVVGSGVTGAEFVDAY  201 (499)
T ss_dssp             EEESEEEECCCE-EECCCGGG-C-CCSSSEEEGGGGGG------------------CSSCCSSEEEESCSHHHHHHHHHH
T ss_pred             EEeCEEEEcCCC-CCCCCCCC-C-CCcCcEEehhHhhh------------------hhccCCeEEEECCCHHHHHHHHHH
Confidence            468999999998 48888899 5 56667887766553                  123457899999999999999999


Q ss_pred             HHcCCceEEEEEeecCCcCCCCHHHH-----HHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCce
Q psy16200         89 LRCGANKVLVVFRKGCTNIRAVPEEV-----QLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQR  163 (183)
Q Consensus        89 ~~~G~~~V~lv~r~~~~~~~~~~~~~-----~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~  163 (183)
                      .++|. +|+++++++.. ++..+.++     +.+.+.||++++++.+.++..+++.+. ++.             .++  
T Consensus       202 ~~~g~-~Vtlv~~~~~~-l~~~d~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~v~-v~~-------------~~g--  263 (499)
T 1xdi_A          202 TELGV-PVTVVASQDHV-LPYEDADAALVLEESFAERGVRLFKNARAASVTRTGAGVL-VTM-------------TDG--  263 (499)
T ss_dssp             HHTTC-CEEEECSSSSS-SCCSSHHHHHHHHHHHHHTTCEEETTCCEEEEEECSSSEE-EEE-------------TTS--
T ss_pred             HHcCC-eEEEEEcCCcc-ccccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCEEE-EEE-------------CCC--
Confidence            99997 69999998764 55444333     245678999999999999986544443 322             223  


Q ss_pred             EEEECCEEEEcccccccCC
Q psy16200        164 IKLKANYIISAFGSTLLDN  182 (183)
Q Consensus       164 ~~i~~D~Vi~a~G~~p~~~  182 (183)
                      .+++||.||+|+|++||++
T Consensus       264 ~~i~aD~Vv~a~G~~p~~~  282 (499)
T 1xdi_A          264 RTVEGSHALMTIGSVPNTS  282 (499)
T ss_dssp             CEEEESEEEECCCEEECCS
T ss_pred             cEEEcCEEEECCCCCcCCC
Confidence            3689999999999999974

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=99.72  E-value=3e-17  Score=140.21  Aligned_cols=138  Identities=18%  Similarity=0.193  Sum_probs=101.3

Q ss_pred             CCCCEEEEccCCCCCcccC-CCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHH
Q psy16200          9 DGYTAIFIGIGKPNANVIP-IFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATS   87 (183)
Q Consensus         9 ~~~davviATGa~~p~~l~-i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~   87 (183)
                      ..||+||||||+ .|+.|+ +| | .+. .++++.+++.                  ....+++|+|||||++|+|+|..
T Consensus       146 ~~~d~lViATGs-~p~~p~~i~-G-~~~-~~~~~~~~~~------------------~~~~~~~vvViGgG~ig~E~A~~  203 (488)
T 3dgz_A          146 LSAEHIVIATGG-RPRYPTQVK-G-ALE-YGITSDDIFW------------------LKESPGKTLVVGASYVALECAGF  203 (488)
T ss_dssp             EEEEEEEECCCE-EECCCSSCB-T-HHH-HCBCHHHHTT------------------CSSCCCSEEEECCSHHHHHHHHH
T ss_pred             EECCEEEEcCCC-CCCCCCCCC-C-ccc-ccCcHHHHHh------------------hhhcCCeEEEECCCHHHHHHHHH
Confidence            469999999998 588888 99 5 332 2345554432                  23456789999999999999999


Q ss_pred             HHHcCCceEEEEEeecCCcCCCCHHHH-----HHHHHcCcEEEeCCcceEEEcc-CCcEEEEEEEEeeecCCCCeecCCC
Q psy16200         88 ALRCGANKVLVVFRKGCTNIRAVPEEV-----QLAWEEKCEFLPFMSPVQVDVK-DNKIAGMQFNRTEQNEKGEWVEDEE  161 (183)
Q Consensus        88 l~~~G~~~V~lv~r~~~~~~~~~~~~~-----~~~~~~gv~~~~~~~~~~i~~~-~~~v~~v~~~~~~~~~~~~~~~~~g  161 (183)
                      |+++|. +|++++|+.  .++..+.++     ..+.++||++++++.+.++... ++.+. +++.+          ..+|
T Consensus       204 l~~~g~-~Vtlv~~~~--~l~~~d~~~~~~l~~~l~~~gv~~~~~~~v~~i~~~~~~~~~-v~~~~----------~~~g  269 (488)
T 3dgz_A          204 LTGIGL-DTTVMMRSI--PLRGFDQQMSSLVTEHMESHGTQFLKGCVPSHIKKLPTNQLQ-VTWED----------HASG  269 (488)
T ss_dssp             HHHTTC-CEEEEESSC--SSTTSCHHHHHHHHHHHHHTTCEEEETEEEEEEEECTTSCEE-EEEEE----------TTTT
T ss_pred             HHHcCC-ceEEEEcCc--ccccCCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEE-EEEEe----------CCCC
Confidence            999997 699999863  355544433     2456789999999999998763 34443 44432          0235


Q ss_pred             ceEEEECCEEEEcccccccCC
Q psy16200        162 QRIKLKANYIISAFGSTLLDN  182 (183)
Q Consensus       162 ~~~~i~~D~Vi~a~G~~p~~~  182 (183)
                      +..+++||.||+|+|++||++
T Consensus       270 ~~~~~~~D~vi~a~G~~p~~~  290 (488)
T 3dgz_A          270 KEDTGTFDTVLWAIGRVPETR  290 (488)
T ss_dssp             EEEEEEESEEEECSCEEESCG
T ss_pred             eeEEEECCEEEEcccCCcccC
Confidence            556789999999999999975

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=99.72  E-value=5.1e-17  Score=138.29  Aligned_cols=139  Identities=19%  Similarity=0.169  Sum_probs=100.9

Q ss_pred             CCCCEEEEccCCCCCccc---CCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHH
Q psy16200          9 DGYTAIFIGIGKPNANVI---PIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCA   85 (183)
Q Consensus         9 ~~~davviATGa~~p~~l---~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A   85 (183)
                      ..||+||||||+ .|+.|   ++| | .+  .++++.+++.                  ....+++|+|||||++|+|+|
T Consensus       147 ~~~d~lviAtG~-~p~~p~~~~i~-G-~~--~~~~~~~~~~------------------~~~~~~~vvViGgG~~g~E~A  203 (478)
T 3dk9_A          147 YTAPHILIATGG-MPSTPHESQIP-G-AS--LGITSDGFFQ------------------LEELPGRSVIVGAGYIAVEMA  203 (478)
T ss_dssp             EECSCEEECCCE-EECCCCTTTST-T-GG--GSBCHHHHTT------------------CCSCCSEEEEECCSHHHHHHH
T ss_pred             EEeeEEEEccCC-CCCCCCcCCCC-C-Cc--eeEchHHhhc------------------hhhcCccEEEECCCHHHHHHH
Confidence            369999999998 48888   888 5 33  3455555432                  234568899999999999999


Q ss_pred             HHHHHcCCceEEEEEeecCCcCCCCHHHH-----HHHHHcCcEEEeCCcceEEEccCCc-EEEEEEEEeeecCCCCeecC
Q psy16200         86 TSALRCGANKVLVVFRKGCTNIRAVPEEV-----QLAWEEKCEFLPFMSPVQVDVKDNK-IAGMQFNRTEQNEKGEWVED  159 (183)
Q Consensus        86 ~~l~~~G~~~V~lv~r~~~~~~~~~~~~~-----~~~~~~gv~~~~~~~~~~i~~~~~~-v~~v~~~~~~~~~~~~~~~~  159 (183)
                      ..|+++|. +|++++|+++. ++..+.++     +.+.+.||++++++.+.++..+++. ...+++.+     .     .
T Consensus       204 ~~l~~~g~-~Vtlv~~~~~~-l~~~d~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~-----~-----~  271 (478)
T 3dk9_A          204 GILSALGS-KTSLMIRHDKV-LRSFDSMISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAV-----P-----G  271 (478)
T ss_dssp             HHHHHTTC-EEEEECSSSSS-CTTSCHHHHHHHHHHHHHTTCEEETTEEEEEEEECSSSEEEEEEECC-----T-----T
T ss_pred             HHHHHcCC-eEEEEEeCCcc-ccccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEEcc-----C-----C
Confidence            99999997 79999998764 45544432     2456789999999999999764333 11233310     0     1


Q ss_pred             CCce--EEEECCEEEEcccccccCC
Q psy16200        160 EEQR--IKLKANYIISAFGSTLLDN  182 (183)
Q Consensus       160 ~g~~--~~i~~D~Vi~a~G~~p~~~  182 (183)
                      +++.  .++++|.||+|+|++||++
T Consensus       272 ~g~~~g~~~~~D~vi~a~G~~p~~~  296 (478)
T 3dk9_A          272 RLPVMTMIPDVDCLLWAIGRVPNTK  296 (478)
T ss_dssp             SCCEEEEEEEESEEEECSCEEESCT
T ss_pred             CCcccceEEEcCEEEEeeccccCCC
Confidence            1332  6899999999999999975

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=99.72  E-value=3.6e-17  Score=139.48  Aligned_cols=138  Identities=21%  Similarity=0.266  Sum_probs=101.8

Q ss_pred             CCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHHH
Q psy16200          9 DGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSA   88 (183)
Q Consensus         9 ~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~l   88 (183)
                      ..||++|||||+ .|+.|++| | .+. .++++.+++.                  ....+++++|||||++|+|+|..|
T Consensus       149 ~~~d~lviATGs-~p~~p~i~-G-~~~-~~~~~~~~~~------------------~~~~~~~vvViGgG~~g~E~A~~l  206 (483)
T 3dgh_A          149 ITAQTFVIAVGG-RPRYPDIP-G-AVE-YGITSDDLFS------------------LDREPGKTLVVGAGYIGLECAGFL  206 (483)
T ss_dssp             EEEEEEEECCCE-EECCCSST-T-HHH-HCBCHHHHTT------------------CSSCCCEEEEECCSHHHHHHHHHH
T ss_pred             EEcCEEEEeCCC-CcCCCCCC-C-ccc-ccCcHHHHhh------------------hhhcCCcEEEECCCHHHHHHHHHH
Confidence            469999999998 58888999 5 432 2345554432                  234568899999999999999999


Q ss_pred             HHcCCceEEEEEeecCCcCCCCHHHH-----HHHHHcCcEEEeCCcceEEEccC-CcEEEEEEEEeeecCCCCeecCCCc
Q psy16200         89 LRCGANKVLVVFRKGCTNIRAVPEEV-----QLAWEEKCEFLPFMSPVQVDVKD-NKIAGMQFNRTEQNEKGEWVEDEEQ  162 (183)
Q Consensus        89 ~~~G~~~V~lv~r~~~~~~~~~~~~~-----~~~~~~gv~~~~~~~~~~i~~~~-~~v~~v~~~~~~~~~~~~~~~~~g~  162 (183)
                      +++|. +|++++|+ . .++..+.++     +.+.++||++++++.+.++..++ +.+. +++.+.          .+++
T Consensus       207 ~~~g~-~Vtlv~~~-~-~l~~~d~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~-v~~~~~----------~~~~  272 (483)
T 3dgh_A          207 KGLGY-EPTVMVRS-I-VLRGFDQQMAELVAASMEERGIPFLRKTVPLSVEKQDDGKLL-VKYKNV----------ETGE  272 (483)
T ss_dssp             HHTTC-EEEEEESS-C-SSTTSCHHHHHHHHHHHHHTTCCEEETEEEEEEEECTTSCEE-EEEEET----------TTCC
T ss_pred             HHcCC-EEEEEeCC-C-CCcccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCcEE-EEEecC----------CCCc
Confidence            99997 79999984 2 355544433     24567899999999999997633 3443 555321          2355


Q ss_pred             eEEEECCEEEEcccccccCC
Q psy16200        163 RIKLKANYIISAFGSTLLDN  182 (183)
Q Consensus       163 ~~~i~~D~Vi~a~G~~p~~~  182 (183)
                      ..++++|.||+|+|++||++
T Consensus       273 ~~~~~~D~vi~a~G~~p~~~  292 (483)
T 3dgh_A          273 ESEDVYDTVLWAIGRKGLVD  292 (483)
T ss_dssp             EEEEEESEEEECSCEEECCG
T ss_pred             eeEEEcCEEEECcccccCcC
Confidence            67899999999999999874

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=99.72  E-value=6.1e-17  Score=130.66  Aligned_cols=140  Identities=16%  Similarity=0.196  Sum_probs=101.0

Q ss_pred             CCCCEEEEccCCCCCcccCCCCCCccC--CCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHH
Q psy16200          9 DGYTAIFIGIGKPNANVIPIFQGLTEE--MGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCAT   86 (183)
Q Consensus         9 ~~~davviATGa~~p~~l~i~gg~~~~--~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~   86 (183)
                      ..||.||+|||+. |+.|++| |..++  .++++. .+...                 ....+++|+|||+|.+|+|+|.
T Consensus       110 ~~~~~vv~AtG~~-~~~~~i~-g~~~~~~~~~~~~-~~~~~-----------------~~~~~~~v~VvG~G~~g~e~A~  169 (325)
T 2q7v_A          110 YRAKAVILATGAD-PRKLGIP-GEDNFWGKGVSTC-ATCDG-----------------FFYKGKKVVVIGGGDAAVEEGM  169 (325)
T ss_dssp             EEEEEEEECCCEE-ECCCCCT-TTTTTBTTTEESC-HHHHG-----------------GGGTTCEEEEECCSHHHHHHHH
T ss_pred             EEeCEEEECcCCC-cCCCCCC-ChhhccCceEEEe-ccCCH-----------------HHcCCCEEEEECCCHHHHHHHH
Confidence            3589999999984 8888899 53332  234322 11111                 1223477999999999999999


Q ss_pred             HHHHcCCceEEEEEeecCCcCCCCHHHHHHHHH-cCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCceEE
Q psy16200         87 SALRCGANKVLVVFRKGCTNIRAVPEEVQLAWE-EKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIK  165 (183)
Q Consensus        87 ~l~~~G~~~V~lv~r~~~~~~~~~~~~~~~~~~-~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~  165 (183)
                      .|.+.|. +|++++|++.  +.......+++.+ .||++++++.+.++.. ++++.++++...          .+|+..+
T Consensus       170 ~l~~~g~-~Vtlv~~~~~--~~~~~~~~~~l~~~~gv~i~~~~~v~~i~~-~~~v~~v~~~~~----------~~g~~~~  235 (325)
T 2q7v_A          170 FLTKFAD-EVTVIHRRDT--LRANKVAQARAFANPKMKFIWDTAVEEIQG-ADSVSGVKLRNL----------KTGEVSE  235 (325)
T ss_dssp             HHTTTCS-EEEEECSSSS--CCSCHHHHHHHHTCTTEEEECSEEEEEEEE-SSSEEEEEEEET----------TTCCEEE
T ss_pred             HHHhcCC-EEEEEeCCCc--CCcchHHHHHHHhcCCceEecCCceEEEcc-CCcEEEEEEEEC----------CCCcEEE
Confidence            9999986 7999998764  2334444455554 5999999999999986 456666766421          2466678


Q ss_pred             EECCEEEEcccccccCC
Q psy16200        166 LKANYIISAFGSTLLDN  182 (183)
Q Consensus       166 i~~D~Vi~a~G~~p~~~  182 (183)
                      ++||.||+|+|++||++
T Consensus       236 i~~D~vi~a~G~~p~~~  252 (325)
T 2q7v_A          236 LATDGVFIFIGHVPNTA  252 (325)
T ss_dssp             EECSEEEECSCEEESCG
T ss_pred             EEcCEEEEccCCCCChH
Confidence            99999999999999864

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=99.71  E-value=4.9e-17  Score=137.31  Aligned_cols=142  Identities=14%  Similarity=0.157  Sum_probs=100.5

Q ss_pred             CCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHHH
Q psy16200          9 DGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSA   88 (183)
Q Consensus         9 ~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~l   88 (183)
                      ..||++|||||+. |+.|++| | .+.+++++..++.........          -....+++|+|||||++|+|+|..|
T Consensus       102 ~~~d~lviAtG~~-p~~p~i~-G-~~~~~v~~~~~~~~~~~l~~~----------~~~~~~~~vvIiG~G~~g~e~A~~l  168 (447)
T 1nhp_A          102 ENYDKLIISPGAV-PFELDIP-G-KDLDNIYLMRGRQWAIKLKQK----------TVDPEVNNVVVIGSGYIGIEAAEAF  168 (447)
T ss_dssp             EECSEEEECCCEE-ECCCCST-T-TTSBSEECCCHHHHHHHHHHH----------HTCTTCCEEEEECCSHHHHHHHHHH
T ss_pred             EeCCEEEEcCCCC-cCCCCCC-C-CCCCCeEEECCHHHHHHHHHH----------hhhcCCCeEEEECCCHHHHHHHHHH
Confidence            4699999999984 8888999 5 566778765443222111000          0011457899999999999999999


Q ss_pred             HHcCCceEEEEEeecCCcCC-CCHHHH-----HHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCc
Q psy16200         89 LRCGANKVLVVFRKGCTNIR-AVPEEV-----QLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQ  162 (183)
Q Consensus        89 ~~~G~~~V~lv~r~~~~~~~-~~~~~~-----~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~  162 (183)
                      ++.|. +|+++++++.. ++ ..+.++     +.+.+.||++++++.+.++..+ +++..++.              ++ 
T Consensus       169 ~~~g~-~Vtlv~~~~~~-l~~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~-~~v~~v~~--------------~~-  230 (447)
T 1nhp_A          169 AKAGK-KVTVIDILDRP-LGVYLDKEFTDVLTEEMEANNITIATGETVERYEGD-GRVQKVVT--------------DK-  230 (447)
T ss_dssp             HHTTC-EEEEEESSSST-TTTTCCHHHHHHHHHHHHTTTEEEEESCCEEEEECS-SBCCEEEE--------------SS-
T ss_pred             HHCCC-eEEEEecCccc-ccccCCHHHHHHHHHHHHhCCCEEEcCCEEEEEEcc-CcEEEEEE--------------CC-
Confidence            99997 79999998654 44 233322     2356789999999999999754 44432322              22 


Q ss_pred             eEEEECCEEEEcccccccCC
Q psy16200        163 RIKLKANYIISAFGSTLLDN  182 (183)
Q Consensus       163 ~~~i~~D~Vi~a~G~~p~~~  182 (183)
                       .++++|.||+|+|++||++
T Consensus       231 -~~i~~d~vi~a~G~~p~~~  249 (447)
T 1nhp_A          231 -NAYDADLVVVAVGVRPNTA  249 (447)
T ss_dssp             -CEEECSEEEECSCEEESCG
T ss_pred             -CEEECCEEEECcCCCCChH
Confidence             2689999999999999864

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=99.71  E-value=4.5e-17  Score=130.08  Aligned_cols=141  Identities=22%  Similarity=0.225  Sum_probs=104.6

Q ss_pred             hCCCCEEEEccCCCCCcccCCCCCCccC--CCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHH
Q psy16200          8 KDGYTAIFIGIGKPNANVIPIFQGLTEE--MGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCA   85 (183)
Q Consensus         8 ~~~~davviATGa~~p~~l~i~gg~~~~--~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A   85 (183)
                      ...||++|+|||+ .|+.|++| |...+  .++++.. +...                 ....+++|+|||+|.+|+|+|
T Consensus       104 ~~~~d~lvlAtG~-~~~~~~~~-g~~~~~~~~~~~~~-~~~~-----------------~~~~~~~v~viG~g~~~~e~a  163 (315)
T 3r9u_A          104 TELAKAVIVCTGS-APKKAGFK-GEDEFFGKGVSTCA-TCDG-----------------FFYKNKEVAVLGGGDTALEEA  163 (315)
T ss_dssp             EEEEEEEEECCCE-EECCCCCB-TTTTTBTTTEESCH-HHHG-----------------GGGTTSEEEEECCBHHHHHHH
T ss_pred             EEEeCEEEEeeCC-CCCCCCCC-ChhhcCCCeEEeee-cccc-----------------cccCcCEEEEECCCHHHHHHH
Confidence            3468999999998 58888899 53332  3444322 2211                 122457799999999999999


Q ss_pred             HHHHHcCCceEEEEEeecCCcCCCCHHHHHHH-HHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCceE
Q psy16200         86 TSALRCGANKVLVVFRKGCTNIRAVPEEVQLA-WEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRI  164 (183)
Q Consensus        86 ~~l~~~G~~~V~lv~r~~~~~~~~~~~~~~~~-~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~  164 (183)
                      ..|.+.|. +|+++++++.  ++.....+.++ .+.||++++++.+.++..+++++.++++..           .+|+..
T Consensus       164 ~~l~~~g~-~v~~~~~~~~--~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~~~~v~~~~-----------~~g~~~  229 (315)
T 3r9u_A          164 LYLANICS-KIYLIHRRDE--FRAAPSTVEKVKKNEKIELITSASVDEVYGDKMGVAGVKVKL-----------KDGSIR  229 (315)
T ss_dssp             HHHHTTSS-EEEEECSSSS--CBSCHHHHHHHHHCTTEEEECSCEEEEEEEETTEEEEEEEEC-----------TTSCEE
T ss_pred             HHHHhhCC-EEEEEEeCCC--CCCCHHHHHHHHhcCCeEEEeCcEEEEEEcCCCcEEEEEEEc-----------CCCCeE
Confidence            99999986 7999998864  34444444444 568999999999999987666777776641           356667


Q ss_pred             EEECCEEEEcccccccCC
Q psy16200        165 KLKANYIISAFGSTLLDN  182 (183)
Q Consensus       165 ~i~~D~Vi~a~G~~p~~~  182 (183)
                      ++++|.||+|+|++|+++
T Consensus       230 ~~~~D~vv~a~G~~p~~~  247 (315)
T 3r9u_A          230 DLNVPGIFTFVGLNVRNE  247 (315)
T ss_dssp             EECCSCEEECSCEEECCG
T ss_pred             EeecCeEEEEEcCCCCch
Confidence            899999999999999864

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=99.71  E-value=4.5e-17  Score=137.57  Aligned_cols=136  Identities=13%  Similarity=0.128  Sum_probs=94.0

Q ss_pred             CCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHHH
Q psy16200          9 DGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSA   88 (183)
Q Consensus         9 ~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~l   88 (183)
                      ..||++|||||++ |+.|++| | ...-.+.+..+....... .            ....+++|+|||||++|+|+|..+
T Consensus       103 ~~yd~lVIATGs~-p~~p~i~-g-~~~~~~~~~~~~~~l~~~-~------------~~~~~~~vvViGgG~ig~E~A~~l  166 (437)
T 4eqs_A          103 ESYDKLILSPGAS-ANSLGFE-S-DITFTLRNLEDTDAIDQF-I------------KANQVDKVLVVGAGYVSLEVLENL  166 (437)
T ss_dssp             EECSEEEECCCEE-ECCCCCC-C-TTEECCSSHHHHHHHHHH-H------------HHHTCCEEEEECCSHHHHHHHHHH
T ss_pred             EEcCEEEECCCCc-ccccccc-C-ceEEeeccHHHHHHHHHh-h------------hccCCcEEEEECCccchhhhHHHH
Confidence            4699999999994 8888888 4 321111121222111100 0            012357899999999999999999


Q ss_pred             HHcCCceEEEEEeecCCcCCCCHHH-----HHHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCce
Q psy16200         89 LRCGANKVLVVFRKGCTNIRAVPEE-----VQLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQR  163 (183)
Q Consensus        89 ~~~G~~~V~lv~r~~~~~~~~~~~~-----~~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~  163 (183)
                      +++|. +|++++++++. ++..+.+     ...+.++||+++++..+.++.+  ..+   ++             .+|+ 
T Consensus       167 ~~~g~-~Vtlv~~~~~l-l~~~d~~~~~~~~~~l~~~gV~i~~~~~v~~~~~--~~v---~~-------------~~g~-  225 (437)
T 4eqs_A          167 YERGL-HPTLIHRSDKI-NKLMDADMNQPILDELDKREIPYRLNEEINAING--NEI---TF-------------KSGK-  225 (437)
T ss_dssp             HHHTC-EEEEEESSSCC-STTSCGGGGHHHHHHHHHTTCCEEESCCEEEEET--TEE---EE-------------TTSC-
T ss_pred             HhcCC-cceeeeeeccc-cccccchhHHHHHHHhhccceEEEeccEEEEecC--Cee---ee-------------cCCe-
Confidence            99997 79999998764 4444332     2345788999999999988864  322   23             2333 


Q ss_pred             EEEECCEEEEcccccccCC
Q psy16200        164 IKLKANYIISAFGSTLLDN  182 (183)
Q Consensus       164 ~~i~~D~Vi~a~G~~p~~~  182 (183)
                       +++||.|++|+|++||++
T Consensus       226 -~~~~D~vl~a~G~~Pn~~  243 (437)
T 4eqs_A          226 -VEHYDMIIEGVGTHPNSK  243 (437)
T ss_dssp             -EEECSEEEECCCEEESCG
T ss_pred             -EEeeeeEEEEeceecCcH
Confidence             689999999999999974

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.71  E-value=5.5e-17  Score=137.63  Aligned_cols=134  Identities=15%  Similarity=0.147  Sum_probs=99.0

Q ss_pred             hCCCCEEEEccCCCCCcccC-CCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHH
Q psy16200          8 KDGYTAIFIGIGKPNANVIP-IFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCAT   86 (183)
Q Consensus         8 ~~~~davviATGa~~p~~l~-i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~   86 (183)
                      ...||++|||||+. |+.|+ +| . ..  +++++.+++.                  ....+++|+|||||++|+|+|.
T Consensus       132 ~~~~d~lviATGs~-p~~~~~~~-~-~~--~v~~~~~~~~------------------~~~~~~~vvViGgG~~g~e~A~  188 (458)
T 1lvl_A          132 RIQCEHLLLATGSS-SVELPMLP-L-GG--PVISSTEALA------------------PKALPQHLVVVGGGYIGLELGI  188 (458)
T ss_dssp             EEECSEEEECCCEE-ECCBTTBC-C-BT--TEECHHHHTC------------------CSSCCSEEEEECCSHHHHHHHH
T ss_pred             EEEeCEEEEeCCCC-CCCCCCCC-c-cC--cEecHHHHhh------------------hhccCCeEEEECcCHHHHHHHH
Confidence            45799999999994 77666 55 2 22  5776665542                  1235688999999999999999


Q ss_pred             HHHHcCCceEEEEEeecCCcCCCCHHHH-----HHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCC
Q psy16200         87 SALRCGANKVLVVFRKGCTNIRAVPEEV-----QLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEE  161 (183)
Q Consensus        87 ~l~~~G~~~V~lv~r~~~~~~~~~~~~~-----~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g  161 (183)
                      .|+++|. +|+++++++.. ++..+.++     +.+.+.||++++++.+.++..  +.+   ++..           .+|
T Consensus       189 ~l~~~g~-~Vtlv~~~~~~-l~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~--~~v---~v~~-----------~~G  250 (458)
T 1lvl_A          189 AYRKLGA-QVSVVEARERI-LPTYDSELTAPVAESLKKLGIALHLGHSVEGYEN--GCL---LAND-----------GKG  250 (458)
T ss_dssp             HHHHHTC-EEEEECSSSSS-STTSCHHHHHHHHHHHHHHTCEEETTCEEEEEET--TEE---EEEC-----------SSS
T ss_pred             HHHHCCC-eEEEEEcCCcc-ccccCHHHHHHHHHHHHHCCCEEEECCEEEEEEe--CCE---EEEE-----------CCC
Confidence            9999997 79999998764 55544332     235678999999999999975  333   2320           134


Q ss_pred             ceEEEECCEEEEcccccccCC
Q psy16200        162 QRIKLKANYIISAFGSTLLDN  182 (183)
Q Consensus       162 ~~~~i~~D~Vi~a~G~~p~~~  182 (183)
                      +..++++|.||+|+|++||++
T Consensus       251 ~~~~i~~D~vv~a~G~~p~~~  271 (458)
T 1lvl_A          251 GQLRLEADRVLVAVGRRPRTK  271 (458)
T ss_dssp             CCCEECCSCEEECCCEEECCS
T ss_pred             ceEEEECCEEEECcCCCcCCC
Confidence            345799999999999999975

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=99.71  E-value=6.4e-17  Score=141.28  Aligned_cols=137  Identities=19%  Similarity=0.258  Sum_probs=97.1

Q ss_pred             CCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHHH
Q psy16200          9 DGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSA   88 (183)
Q Consensus         9 ~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~l   88 (183)
                      ..||+||||||+ .|+.|++| | .+. .++++.+++.                  ....+++|+|||||++|+|+|..|
T Consensus       248 ~~~d~lviAtGs-~p~~p~i~-G-~~~-~~~~~~~~~~------------------~~~~~~~vvViGgG~~g~E~A~~l  305 (598)
T 2x8g_A          248 ITGNKIILATGE-RPKYPEIP-G-AVE-YGITSDDLFS------------------LPYFPGKTLVIGASYVALECAGFL  305 (598)
T ss_dssp             EEEEEEEECCCE-EECCCSST-T-HHH-HCEEHHHHTT------------------CSSCCCSEEEECCSHHHHHHHHHH
T ss_pred             EEeCEEEEeCCC-CCCCCCCC-C-ccc-ceEcHHHHhh------------------CccCCCEEEEECCCHHHHHHHHHH
Confidence            469999999998 58888999 5 332 2344444331                  123457899999999999999999


Q ss_pred             HHcCCceEEEEEeecCCcCCCCHHHH-----HHHHHcCcEEEeCCcceEEEcc------C---CcEEEEEEEEeeecCCC
Q psy16200         89 LRCGANKVLVVFRKGCTNIRAVPEEV-----QLAWEEKCEFLPFMSPVQVDVK------D---NKIAGMQFNRTEQNEKG  154 (183)
Q Consensus        89 ~~~G~~~V~lv~r~~~~~~~~~~~~~-----~~~~~~gv~~~~~~~~~~i~~~------~---~~v~~v~~~~~~~~~~~  154 (183)
                      +++|. +|++++|+ . .++..+.++     +.+.++||+++++..+.++...      +   +.+. +++.        
T Consensus       306 ~~~g~-~Vtlv~~~-~-~l~~~d~~~~~~~~~~l~~~gv~i~~~~~v~~v~~~~~~~~~~~~~~~~~-v~~~--------  373 (598)
T 2x8g_A          306 ASLGG-DVTVMVRS-I-LLRGFDQQMAEKVGDYMENHGVKFAKLCVPDEIKQLKVVDTENNKPGLLL-VKGH--------  373 (598)
T ss_dssp             HHTTC-CEEEEESS-C-SSTTSCHHHHHHHHHHHHHTTCEEEETEEEEEEEEEECCBTTTTBCCEEE-EEEE--------
T ss_pred             HHcCC-EEEEEECC-c-CcCcCCHHHHHHHHHHHHhCCCEEEECCeEEEEEeccccccccCCCceEE-EEEE--------
Confidence            99997 69999987 2 355543332     2356789999999888777421      1   3332 2221        


Q ss_pred             CeecCCCceEEEECCEEEEcccccccCC
Q psy16200        155 EWVEDEEQRIKLKANYIISAFGSTLLDN  182 (183)
Q Consensus       155 ~~~~~~g~~~~i~~D~Vi~a~G~~p~~~  182 (183)
                         ..+|++..++||.||+|+|++||++
T Consensus       374 ---~~~g~~~~~~~D~vi~a~G~~p~~~  398 (598)
T 2x8g_A          374 ---YTDGKKFEEEFETVIFAVGREPQLS  398 (598)
T ss_dssp             ---ETTSCEEEEEESEEEECSCEEECGG
T ss_pred             ---eCCCcEEeccCCEEEEEeCCccccC
Confidence               1345566678999999999999874

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=99.71  E-value=7.2e-17  Score=130.11  Aligned_cols=144  Identities=19%  Similarity=0.226  Sum_probs=104.5

Q ss_pred             hCCCCEEEEccCCCCCcccCCCCCCccC--CCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHH
Q psy16200          8 KDGYTAIFIGIGKPNANVIPIFQGLTEE--MGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCA   85 (183)
Q Consensus         8 ~~~~davviATGa~~p~~l~i~gg~~~~--~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A   85 (183)
                      ...||.+|+|||+ .|+.+++| |....  .++++. .+....               .....+++|+|||+|.+|+|+|
T Consensus       128 ~~~~d~vvlAtG~-~~~~~~~~-g~~~~~~~~~~~~-~~~~~~---------------~~~~~~~~v~vvG~G~~g~e~a  189 (338)
T 3itj_A          128 PVTTDAIILATGA-SAKRMHLP-GEETYWQKGISAC-AVCDGA---------------VPIFRNKPLAVIGGGDSACEEA  189 (338)
T ss_dssp             CEEEEEEEECCCE-EECCCCCT-THHHHBTTTEESC-HHHHTT---------------SGGGTTSEEEEECSSHHHHHHH
T ss_pred             EEEeCEEEECcCC-CcCCCCCC-CchhccCccEEEc-hhcccc---------------hhhcCCCEEEEECCCHHHHHHH
Confidence            3468999999998 48888898 53221  233322 111110               0022456799999999999999


Q ss_pred             HHHHHcCCceEEEEEeecCCcCCCCHHHHHHHHHc-CcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCceE
Q psy16200         86 TSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEE-KCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRI  164 (183)
Q Consensus        86 ~~l~~~G~~~V~lv~r~~~~~~~~~~~~~~~~~~~-gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~  164 (183)
                      ..|.+.|. +|++++|++.  +.........+.+. ||++++++.+.++..+++++.++++...          .+++..
T Consensus       190 ~~l~~~g~-~v~~v~~~~~--~~~~~~~~~~l~~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~~----------~~g~~~  256 (338)
T 3itj_A          190 QFLTKYGS-KVFMLVRKDH--LRASTIMQKRAEKNEKIEILYNTVALEAKGDGKLLNALRIKNT----------KKNEET  256 (338)
T ss_dssp             HHHTTTSS-EEEEECSSSS--CCSCHHHHHHHHHCTTEEEECSEEEEEEEESSSSEEEEEEEET----------TTTEEE
T ss_pred             HHHHhcCC-EEEEEEcCCc--cCCCHHHHHHHHhcCCeEEeecceeEEEEcccCcEEEEEEEEC----------CCCceE
Confidence            99999986 7999998864  33345555566665 9999999999999876666777777531          345667


Q ss_pred             EEECCEEEEcccccccCC
Q psy16200        165 KLKANYIISAFGSTLLDN  182 (183)
Q Consensus       165 ~i~~D~Vi~a~G~~p~~~  182 (183)
                      +++||.||+|+|+.|+++
T Consensus       257 ~i~~D~vi~a~G~~p~~~  274 (338)
T 3itj_A          257 DLPVSGLFYAIGHTPATK  274 (338)
T ss_dssp             EEECSEEEECSCEEECCG
T ss_pred             EEEeCEEEEEeCCCCChh
Confidence            899999999999999864

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=99.71  E-value=1.1e-16  Score=129.32  Aligned_cols=144  Identities=20%  Similarity=0.217  Sum_probs=100.6

Q ss_pred             CCCCEEEEccCCCCCcccCCCCCCccCCCcee-----hhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHH
Q psy16200          9 DGYTAIFIGIGKPNANVIPIFQGLTEEMGFYT-----SKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFD   83 (183)
Q Consensus         9 ~~~davviATGa~~p~~l~i~gg~~~~~~V~~-----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e   83 (183)
                      ..||.||+|||++ |+.|++| |.....+++.     ....+...               .....+++|+|||+|.+|+|
T Consensus       111 ~~~~~vv~A~G~~-~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~v~VvG~G~~g~e  173 (333)
T 1vdc_A          111 ILADAVILAIGAV-AKRLSFV-GSGEVLGGFWNRGISACAVCDGA---------------APIFRNKPLAVIGGGDSAME  173 (333)
T ss_dssp             EEEEEEEECCCEE-ECCCCCB-TCSSSSSCCBTTTEESCHHHHTT---------------SGGGTTSEEEEECCSHHHHH
T ss_pred             EEcCEEEECCCCC-cCCCCCC-CccccccccccCcEEEeccCccc---------------hhhcCCCeEEEECCChHHHH
Confidence            3589999999995 8888899 5333122221     11111110               00134577999999999999


Q ss_pred             HHHHHHHcCCceEEEEEeecCCcCCCCHHHHHHH-HHcCcEEEeCCcceEEEccCC--cEEEEEEEEeeecCCCCeecCC
Q psy16200         84 CATSALRCGANKVLVVFRKGCTNIRAVPEEVQLA-WEEKCEFLPFMSPVQVDVKDN--KIAGMQFNRTEQNEKGEWVEDE  160 (183)
Q Consensus        84 ~A~~l~~~G~~~V~lv~r~~~~~~~~~~~~~~~~-~~~gv~~~~~~~~~~i~~~~~--~v~~v~~~~~~~~~~~~~~~~~  160 (183)
                      +|..|.+.|. +|++++|++.  +........++ .+.||++++++.+.++..+++  +++++++...          .+
T Consensus       174 ~A~~l~~~g~-~V~lv~~~~~--~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~v~~~~~----------~~  240 (333)
T 1vdc_A          174 EANFLTKYGS-KVYIIHRRDA--FRASKIMQQRALSNPKIDVIWNSSVVEAYGDGERDVLGGLKVKNV----------VT  240 (333)
T ss_dssp             HHHHHTTTSS-EEEEECSSSS--CCSCHHHHHHHHTCTTEEEECSEEEEEEEESSSSSSEEEEEEEET----------TT
T ss_pred             HHHHHHhcCC-eEEEEecCCc--CCccHHHHHHHHhCCCeeEecCCceEEEeCCCCccceeeEEEEec----------CC
Confidence            9999999986 7999998764  33334333343 568999999999999986544  6766666421          24


Q ss_pred             CceEEEECCEEEEcccccccCC
Q psy16200        161 EQRIKLKANYIISAFGSTLLDN  182 (183)
Q Consensus       161 g~~~~i~~D~Vi~a~G~~p~~~  182 (183)
                      |+..+++||.||+|+|++||++
T Consensus       241 g~~~~i~~D~vi~a~G~~p~~~  262 (333)
T 1vdc_A          241 GDVSDLKVSGLFFAIGHEPATK  262 (333)
T ss_dssp             CCEEEEECSEEEECSCEEESCG
T ss_pred             CceEEEecCEEEEEeCCccchH
Confidence            5567899999999999999864

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=99.70  E-value=1.5e-16  Score=135.14  Aligned_cols=142  Identities=15%  Similarity=0.154  Sum_probs=102.8

Q ss_pred             CCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHHH
Q psy16200          9 DGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSA   88 (183)
Q Consensus         9 ~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~l   88 (183)
                      ..||++|||||+ .|+.|++| | .+.+++++..++.........          -....+++|+|||||++|+|+|..|
T Consensus       112 ~~~d~lviAtG~-~p~~p~i~-G-~~~~~v~~~~~~~~~~~l~~~----------l~~~~~~~vvViGgG~~g~e~A~~l  178 (472)
T 3iwa_A          112 LKYDKLVLALGS-KANRPPVE-G-MDLAGVTPVTNLDEAEFVQHA----------ISAGEVSKAVIVGGGFIGLEMAVSL  178 (472)
T ss_dssp             EECSEEEECCCE-EECCCSCT-T-TTSBTEEECCSHHHHHHHHHH----------CCTTSCSEEEEECCSHHHHHHHHHH
T ss_pred             EECCEEEEeCCC-CcCCCCCC-C-CCCCCEEEeCCHHHHHHHHHH----------hhcCCCCEEEEECCCHHHHHHHHHH
Confidence            469999999998 58888999 5 566777654333221111000          0013467899999999999999999


Q ss_pred             HHc-CCceEEEEEeecCCcCC-CCHHHH-----HHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCC
Q psy16200         89 LRC-GANKVLVVFRKGCTNIR-AVPEEV-----QLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEE  161 (183)
Q Consensus        89 ~~~-G~~~V~lv~r~~~~~~~-~~~~~~-----~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g  161 (183)
                      .++ |. +|+++++++.. ++ ..+.++     +.+.+.||++++++.+.++..++++++ +++.             +|
T Consensus       179 ~~~~g~-~Vtlv~~~~~~-l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~-v~~~-------------~g  242 (472)
T 3iwa_A          179 ADMWGI-DTTVVELADQI-MPGFTSKSLSQMLRHDLEKNDVVVHTGEKVVRLEGENGKVA-RVIT-------------DK  242 (472)
T ss_dssp             HHHHCC-EEEEECSSSSS-STTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEESSSBEE-EEEE-------------SS
T ss_pred             HHhcCC-cEEEEEccCcc-cccccCHHHHHHHHHHHHhcCCEEEeCCEEEEEEccCCeEE-EEEe-------------CC
Confidence            999 97 79999998754 44 433332     245678999999999999986566665 4432             23


Q ss_pred             ceEEEECCEEEEcccccccC
Q psy16200        162 QRIKLKANYIISAFGSTLLD  181 (183)
Q Consensus       162 ~~~~i~~D~Vi~a~G~~p~~  181 (183)
                      +  +++||.||+|+|+.||+
T Consensus       243 ~--~i~aD~Vv~a~G~~p~~  260 (472)
T 3iwa_A          243 R--TLDADLVILAAGVSPNT  260 (472)
T ss_dssp             C--EEECSEEEECSCEEECC
T ss_pred             C--EEEcCEEEECCCCCcCH
Confidence            3  78999999999999986

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=99.70  E-value=7.8e-17  Score=138.78  Aligned_cols=137  Identities=20%  Similarity=0.328  Sum_probs=98.9

Q ss_pred             CCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHHH
Q psy16200          9 DGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSA   88 (183)
Q Consensus         9 ~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~l   88 (183)
                      ..||+||||||+ .|+.|++| | .+. .++++.+++.                  ....+++|+|||||++|+|+|..|
T Consensus       172 i~~d~lViATGs-~p~~p~i~-G-~~~-~~~t~~~~~~------------------l~~~~~~vvVIGgG~ig~E~A~~l  229 (519)
T 3qfa_A          172 YSAERFLIATGE-RPRYLGIP-G-DKE-YCISSDDLFS------------------LPYCPGKTLVVGASYVALECAGFL  229 (519)
T ss_dssp             EEEEEEEECCCE-EECCCCCT-T-HHH-HCBCHHHHTT------------------CSSCCCSEEEECCSHHHHHHHHHH
T ss_pred             EECCEEEEECCC-CcCCCCCC-C-ccC-ceEcHHHHhh------------------hhhcCCeEEEECCcHHHHHHHHHH
Confidence            469999999998 58888999 5 332 3555555442                  234567899999999999999999


Q ss_pred             HHcCCceEEEEEeecCCcCCCCHHHH-----HHHHHcCcEEEeCCcceEEEc-cC---CcEEEEEEEEeeecCCCCeecC
Q psy16200         89 LRCGANKVLVVFRKGCTNIRAVPEEV-----QLAWEEKCEFLPFMSPVQVDV-KD---NKIAGMQFNRTEQNEKGEWVED  159 (183)
Q Consensus        89 ~~~G~~~V~lv~r~~~~~~~~~~~~~-----~~~~~~gv~~~~~~~~~~i~~-~~---~~v~~v~~~~~~~~~~~~~~~~  159 (183)
                      +++|. +|++++|+ . .++..+.++     +.+.+.||+++++..+.++.. ++   +.+. +++..           .
T Consensus       230 ~~~G~-~Vtlv~~~-~-~l~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~v~~~~~~~~~~~~-v~~~~-----------~  294 (519)
T 3qfa_A          230 AGIGL-DVTVMVRS-I-LLRGFDQDMANKIGEHMEEHGIKFIRQFVPIKVEQIEAGTPGRLR-VVAQS-----------T  294 (519)
T ss_dssp             HHTTC-CEEEEESS-C-SSTTSCHHHHHHHHHHHHHTTCEEEESEEEEEEEEEECCTTCEEE-EEEEE-----------S
T ss_pred             HHcCC-eEEEEecc-c-ccccCCHHHHHHHHHHHHHCCCEEEeCCeEEEEEEccCCCCceEE-EEEEE-----------C
Confidence            99997 69999985 3 355554433     235678999999988877764 22   3332 33321           2


Q ss_pred             CC-ceEEEECCEEEEcccccccCC
Q psy16200        160 EE-QRIKLKANYIISAFGSTLLDN  182 (183)
Q Consensus       160 ~g-~~~~i~~D~Vi~a~G~~p~~~  182 (183)
                      ++ +..++++|.||+|+|++||++
T Consensus       295 ~g~~~~~~~~D~vi~a~G~~p~~~  318 (519)
T 3qfa_A          295 NSEEIIEGEYNTVMLAIGRDACTR  318 (519)
T ss_dssp             SSSCEEEEEESEEEECSCEEESCS
T ss_pred             CCcEEEEEECCEEEEecCCcccCC
Confidence            23 346789999999999999975

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=99.70  E-value=1.2e-16  Score=136.20  Aligned_cols=139  Identities=15%  Similarity=0.144  Sum_probs=100.3

Q ss_pred             CCCCEEEEccCCCCCcccCCCCCCccCCCceehh---hhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHH
Q psy16200          9 DGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSK---TFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCA   85 (183)
Q Consensus         9 ~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A   85 (183)
                      ..||.+|||||+. |+.|++| | .+.+++++..   +++......             ....+++|+|||||++|+|+|
T Consensus       139 ~~~d~lviAtG~~-p~~p~i~-G-~~~~~v~~~~~~~~~~~l~~~~-------------~~~~~~~vvViGgG~~g~e~A  202 (480)
T 3cgb_A          139 FSYDRLLIATGVR-PVMPEWE-G-RDLQGVHLLKTIPDAERILKTL-------------ETNKVEDVTIIGGGAIGLEMA  202 (480)
T ss_dssp             EECSEEEECCCEE-ECCCCCB-T-TTSBTEECCSSHHHHHHHHHHH-------------HSSCCCEEEEECCHHHHHHHH
T ss_pred             EEcCEEEECCCCc-ccCCCCC-C-ccCCCEEEeCCHHHHHHHHHHh-------------hhcCCCeEEEECCCHHHHHHH
Confidence            4699999999984 8888899 5 5666776533   322211100             011457899999999999999


Q ss_pred             HHHHHcCCceEEEEEeecCCcCCCCHHHH-----HHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCC
Q psy16200         86 TSALRCGANKVLVVFRKGCTNIRAVPEEV-----QLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDE  160 (183)
Q Consensus        86 ~~l~~~G~~~V~lv~r~~~~~~~~~~~~~-----~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~  160 (183)
                      ..|.+.|. +|+++++++.. ++..+.++     +.+.+.||++++++.+.++..+ +++..+..              +
T Consensus       203 ~~l~~~g~-~Vtlv~~~~~~-l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~-~~v~~v~~--------------~  265 (480)
T 3cgb_A          203 ETFVELGK-KVRMIERNDHI-GTIYDGDMAEYIYKEADKHHIEILTNENVKAFKGN-ERVEAVET--------------D  265 (480)
T ss_dssp             HHHHHTTC-EEEEECCGGGT-TSSSCHHHHHHHHHHHHHTTCEEECSCCEEEEEES-SBEEEEEE--------------T
T ss_pred             HHHHhcCC-eEEEEEeCCch-hhcCCHHHHHHHHHHHHHcCcEEEcCCEEEEEEcC-CcEEEEEE--------------C
Confidence            99999997 79999998754 44433332     3456789999999999999753 45543332              2


Q ss_pred             CceEEEECCEEEEcccccccCC
Q psy16200        161 EQRIKLKANYIISAFGSTLLDN  182 (183)
Q Consensus       161 g~~~~i~~D~Vi~a~G~~p~~~  182 (183)
                      +  .+++||.||+|+|++||++
T Consensus       266 ~--~~i~~D~vi~a~G~~p~~~  285 (480)
T 3cgb_A          266 K--GTYKADLVLVSVGVKPNTD  285 (480)
T ss_dssp             T--EEEECSEEEECSCEEESCG
T ss_pred             C--CEEEcCEEEECcCCCcChH
Confidence            2  2799999999999999863

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=99.69  E-value=7.3e-17  Score=137.61  Aligned_cols=138  Identities=14%  Similarity=0.188  Sum_probs=99.6

Q ss_pred             hCCCCEEEEccCCCCCcccC-CCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHH
Q psy16200          8 KDGYTAIFIGIGKPNANVIP-IFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCAT   86 (183)
Q Consensus         8 ~~~~davviATGa~~p~~l~-i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~   86 (183)
                      ...||.+|+|||++ |+.|+ +| . ..  +++++.+++.                  ....+++|+|||||++|+|+|.
T Consensus       146 ~i~ad~lViAtGs~-p~~~~~i~-~-~~--~v~~~~~~~~------------------~~~~~~~vvViGgG~ig~E~A~  202 (482)
T 1ojt_A          146 IVAFKNCIIAAGSR-VTKLPFIP-E-DP--RIIDSSGALA------------------LKEVPGKLLIIGGGIIGLEMGT  202 (482)
T ss_dssp             EEEEEEEEECCCEE-ECCCSSCC-C-CT--TEECHHHHTT------------------CCCCCSEEEEESCSHHHHHHHH
T ss_pred             EEEcCEEEECCCCC-CCCCCCCC-c-cC--cEEcHHHHhc------------------ccccCCeEEEECCCHHHHHHHH
Confidence            34689999999995 77776 55 2 22  5776666542                  1234688999999999999999


Q ss_pred             HHHHcCCceEEEEEeecCCcCCCCHHHH-----HHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCC
Q psy16200         87 SALRCGANKVLVVFRKGCTNIRAVPEEV-----QLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEE  161 (183)
Q Consensus        87 ~l~~~G~~~V~lv~r~~~~~~~~~~~~~-----~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g  161 (183)
                      .|+++|. +|++++++++. ++..+.++     +.+.++||++++++.+.++..+++.+ .+++.+           ..+
T Consensus       203 ~l~~~G~-~Vtlv~~~~~~-l~~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~-~v~~~~-----------~~~  268 (482)
T 1ojt_A          203 VYSTLGS-RLDVVEMMDGL-MQGADRDLVKVWQKQNEYRFDNIMVNTKTVAVEPKEDGV-YVTFEG-----------ANA  268 (482)
T ss_dssp             HHHHHTC-EEEEECSSSSS-STTSCHHHHHHHHHHHGGGEEEEECSCEEEEEEEETTEE-EEEEES-----------SSC
T ss_pred             HHHHcCC-eEEEEEECCcc-ccccCHHHHHHHHHHHHhcCCEEEECCEEEEEEEcCCeE-EEEEec-----------cCC
Confidence            9999997 79999998764 55544433     23567899999999999997644433 244420           011


Q ss_pred             ceEEEECCEEEEcccccccCC
Q psy16200        162 QRIKLKANYIISAFGSTLLDN  182 (183)
Q Consensus       162 ~~~~i~~D~Vi~a~G~~p~~~  182 (183)
                      +..+++||.||+|+|++||++
T Consensus       269 ~g~~~~~D~vv~a~G~~p~~~  289 (482)
T 1ojt_A          269 PKEPQRYDAVLVAAGRAPNGK  289 (482)
T ss_dssp             CSSCEEESCEEECCCEEECGG
T ss_pred             CceEEEcCEEEECcCCCcCCC
Confidence            112578999999999999974

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=99.69  E-value=3.3e-16  Score=125.29  Aligned_cols=139  Identities=17%  Similarity=0.192  Sum_probs=101.5

Q ss_pred             CCCCEEEEccCCCCCcccCCCCCCccC--CCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHH
Q psy16200          9 DGYTAIFIGIGKPNANVIPIFQGLTEE--MGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCAT   86 (183)
Q Consensus         9 ~~~davviATGa~~p~~l~i~gg~~~~--~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~   86 (183)
                      ..||++|+|||+. |+.+++| |...+  .++++. .+...                 ....+++|+|||+|++|+|+|.
T Consensus       112 ~~~d~lvlAtG~~-~~~~~i~-g~~~~~~~~~~~~-~~~~~-----------------~~~~~~~v~vvG~G~~~~e~a~  171 (323)
T 3f8d_A          112 FKADSVILGIGVK-RRKLGVP-GEQEFAGRGISYC-SVADA-----------------PLFKNRVVAVIGGGDSALEGAE  171 (323)
T ss_dssp             EEEEEEEECCCCE-ECCCCCT-TTTTTBTTTEESC-HHHHG-----------------GGGTTCEEEEECCSHHHHHHHH
T ss_pred             EEcCEEEECcCCC-CccCCCC-chhhhcCCceEEe-ccCCH-----------------hHcCCCEEEEECCCHHHHHHHH
Confidence            4589999999995 8888899 53322  444331 11111                 1223467999999999999999


Q ss_pred             HHHHcCCceEEEEEeecCCcCCCCHHHHHHHHHc-CcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCceEE
Q psy16200         87 SALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEE-KCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIK  165 (183)
Q Consensus        87 ~l~~~G~~~V~lv~r~~~~~~~~~~~~~~~~~~~-gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~  165 (183)
                      .|.+.|. +|+++++++..  ...+..++.+.++ ||++++++.+.++..+ +++.++++.+.          .+|+..+
T Consensus       172 ~l~~~g~-~v~~~~~~~~~--~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~-~~~~~v~~~~~----------~~g~~~~  237 (323)
T 3f8d_A          172 ILSSYST-KVYLIHRRDTF--KAQPIYVETVKKKPNVEFVLNSVVKEIKGD-KVVKQVVVENL----------KTGEIKE  237 (323)
T ss_dssp             HHHHHSS-EEEEECSSSSC--CSCHHHHHHHHTCTTEEEECSEEEEEEEES-SSEEEEEEEET----------TTCCEEE
T ss_pred             HHHHhCC-eEEEEEeCCCC--CcCHHHHHHHHhCCCcEEEeCCEEEEEecc-CceeEEEEEEC----------CCCceEE
Confidence            9999986 79999998653  3344455556554 9999999999999764 56666666431          3466678


Q ss_pred             EECCEEEEcccccccC
Q psy16200        166 LKANYIISAFGSTLLD  181 (183)
Q Consensus       166 i~~D~Vi~a~G~~p~~  181 (183)
                      +++|.||+|+|++|++
T Consensus       238 ~~~D~vv~a~G~~p~~  253 (323)
T 3f8d_A          238 LNVNGVFIEIGFDPPT  253 (323)
T ss_dssp             EECSEEEECCCEECCH
T ss_pred             EEcCEEEEEECCCCCh
Confidence            9999999999999984

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=99.69  E-value=1.7e-16  Score=136.80  Aligned_cols=141  Identities=12%  Similarity=0.076  Sum_probs=102.5

Q ss_pred             CCCCEEEEccCCCCCcccCCCCCCccC--CCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHH
Q psy16200          9 DGYTAIFIGIGKPNANVIPIFQGLTEE--MGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCAT   86 (183)
Q Consensus         9 ~~~davviATGa~~p~~l~i~gg~~~~--~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~   86 (183)
                      ..||.||+|||++ |+.+++| |..++  .++++... +               +  .....+++|+|||||++|+|+|.
T Consensus       313 ~~~d~vVlAtG~~-~~~~~ip-G~~~~~~~~v~~~~~-~---------------~--~~~~~~k~V~ViGgG~~g~E~A~  372 (521)
T 1hyu_A          313 LKARSIIIATGAK-WRNMNVP-GEDQYRTKGVTYCPH-C---------------D--GPLFKGKRVAVIGGGNSGVEAAI  372 (521)
T ss_dssp             EEEEEEEECCCEE-ECCCCCT-TTTTTTTTTEECCTT-C---------------C--GGGGBTSEEEEECCSHHHHHHHH
T ss_pred             EEcCEEEECCCCC-cCCCCCC-ChhhhcCceEEEeec-C---------------c--hhhcCCCeEEEECCCHHHHHHHH
Confidence            3589999999985 8888899 53332  23332110 0               1  11224577999999999999999


Q ss_pred             HHHHcCCceEEEEEeecCCcCCCCHHHHHHHHH-cCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCceEE
Q psy16200         87 SALRCGANKVLVVFRKGCTNIRAVPEEVQLAWE-EKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIK  165 (183)
Q Consensus        87 ~l~~~G~~~V~lv~r~~~~~~~~~~~~~~~~~~-~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~  165 (183)
                      .|++.|. +|++++|++..  .........+.+ .||++++++.+.++..++++++++++.+.          .+|+..+
T Consensus       373 ~L~~~g~-~Vtlv~~~~~l--~~~~~l~~~l~~~~gV~v~~~~~v~~i~~~~~~v~~v~~~~~----------~~g~~~~  439 (521)
T 1hyu_A          373 DLAGIVE-HVTLLEFAPEM--KADQVLQDKVRSLKNVDIILNAQTTEVKGDGSKVVGLEYRDR----------VSGDIHS  439 (521)
T ss_dssp             HHHHHBS-EEEEECSSSSC--CSCHHHHHHHTTCTTEEEECSEEEEEEEECSSSEEEEEEEET----------TTCCEEE
T ss_pred             HHHhhCC-EEEEEEeCccc--CcCHHHHHHHhcCCCcEEEeCCEEEEEEcCCCcEEEEEEEeC----------CCCceEE
Confidence            9999986 79999987643  333333344555 59999999999999876667877777531          2466778


Q ss_pred             EECCEEEEcccccccCC
Q psy16200        166 LKANYIISAFGSTLLDN  182 (183)
Q Consensus       166 i~~D~Vi~a~G~~p~~~  182 (183)
                      +++|.||+|+|++||++
T Consensus       440 i~~D~vi~a~G~~pn~~  456 (521)
T 1hyu_A          440 VALAGIFVQIGLLPNTH  456 (521)
T ss_dssp             EECSEEEECCCEEESCG
T ss_pred             EEcCEEEECcCCCCCch
Confidence            99999999999999873

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=99.69  E-value=1.3e-16  Score=134.86  Aligned_cols=142  Identities=15%  Similarity=0.172  Sum_probs=98.4

Q ss_pred             hCCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHH
Q psy16200          8 KDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATS   87 (183)
Q Consensus         8 ~~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~   87 (183)
                      ...||++|||||+ .|+.|++| | .+.+++++..+..........          .....+++|+|||||++|+|+|..
T Consensus       100 ~~~~d~lviAtG~-~p~~p~i~-G-~~~~~v~~~~~~~~~~~~~~~----------~~~~~~~~vvViGgG~~g~E~A~~  166 (449)
T 3kd9_A          100 SYEWDYLVFANGA-SPQVPAIE-G-VNLKGVFTADLPPDALAIREY----------MEKYKVENVVIIGGGYIGIEMAEA  166 (449)
T ss_dssp             EEECSEEEECCCE-EECCCSCB-T-TTSTTEECSCSTHHHHHHHHH----------HSSSCCCEEEEECCSHHHHHHHHH
T ss_pred             EEEcCEEEECCCC-CCCCCCCC-C-CCCCCEEEeCCHHHHHHHHHH----------HHhcCCCeEEEECCCHHHHHHHHH
Confidence            3469999999998 58888999 5 566777654332221111000          001134679999999999999999


Q ss_pred             HHHcCCceEEEEEeecCCcCCC-CHHHHH-----HHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCC
Q psy16200         88 ALRCGANKVLVVFRKGCTNIRA-VPEEVQ-----LAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEE  161 (183)
Q Consensus        88 l~~~G~~~V~lv~r~~~~~~~~-~~~~~~-----~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g  161 (183)
                      |.++|. +|++++|+++. ++. .+.++.     .+.+. |+++++..+.++..++ ++..+.              .++
T Consensus       167 l~~~g~-~Vtlv~~~~~~-l~~~~~~~~~~~l~~~l~~~-v~i~~~~~v~~i~~~~-~v~~v~--------------~~g  228 (449)
T 3kd9_A          167 FAAQGK-NVTMIVRGERV-LRRSFDKEVTDILEEKLKKH-VNLRLQEITMKIEGEE-RVEKVV--------------TDA  228 (449)
T ss_dssp             HHHTTC-EEEEEESSSST-TTTTSCHHHHHHHHHHHTTT-SEEEESCCEEEEECSS-SCCEEE--------------ETT
T ss_pred             HHhCCC-eEEEEEcCCcc-chhhcCHHHHHHHHHHHHhC-cEEEeCCeEEEEeccC-cEEEEE--------------eCC
Confidence            999996 79999998765 443 433322     23455 9999999999987533 333221              123


Q ss_pred             ceEEEECCEEEEcccccccCC
Q psy16200        162 QRIKLKANYIISAFGSTLLDN  182 (183)
Q Consensus       162 ~~~~i~~D~Vi~a~G~~p~~~  182 (183)
                        .+++||.||+|+|++||++
T Consensus       229 --~~i~~D~Vv~a~G~~p~~~  247 (449)
T 3kd9_A          229 --GEYKAELVILATGIKPNIE  247 (449)
T ss_dssp             --EEEECSEEEECSCEEECCH
T ss_pred             --CEEECCEEEEeeCCccCHH
Confidence              3789999999999999863

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=99.68  E-value=6.6e-17  Score=129.82  Aligned_cols=141  Identities=16%  Similarity=0.118  Sum_probs=100.0

Q ss_pred             CCCCEEEEccCCCCCcccCCCCCCccC--CCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHH
Q psy16200          9 DGYTAIFIGIGKPNANVIPIFQGLTEE--MGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCAT   86 (183)
Q Consensus         9 ~~~davviATGa~~p~~l~i~gg~~~~--~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~   86 (183)
                      ..||.+|+|||+. |+.|++| |...+  .++++.. .+..                 ....+++|+|||+|.+|+|+|.
T Consensus       103 ~~~~~lv~AtG~~-~~~~~~~-g~~~~~~~~~~~~~-~~~~-----------------~~~~~~~v~ViG~G~~g~e~A~  162 (320)
T 1trb_A          103 YTCDALIIATGAS-ARYLGLP-SEEAFKGRGVSACA-TSDG-----------------FFYRNQKVAVIGGGNTAVEEAL  162 (320)
T ss_dssp             EEEEEEEECCCEE-ECCCCCH-HHHHTBTTTEESCH-HHHG-----------------GGGTTSEEEEECSSHHHHHHHH
T ss_pred             EEcCEEEECCCCC-cCCCCCC-ChHHhCCceeEecc-cCCc-----------------cccCCCeEEEECCCHHHHHHHH
Confidence            3589999999984 8778888 42222  2343321 1111                 1224577999999999999999


Q ss_pred             HHHHcCCceEEEEEeecCCcCCCCHHH----HHHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCC-C
Q psy16200         87 SALRCGANKVLVVFRKGCTNIRAVPEE----VQLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDE-E  161 (183)
Q Consensus        87 ~l~~~G~~~V~lv~r~~~~~~~~~~~~----~~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~-g  161 (183)
                      .|.++|. +|++++|++..  ......    .+.+.+.||++++++.+.++..+++++.++++...          .+ |
T Consensus       163 ~l~~~g~-~Vtlv~~~~~~--~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~----------~~~g  229 (320)
T 1trb_A          163 YLSNIAS-EVHLIHRRDGF--RAEKILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDT----------QNSD  229 (320)
T ss_dssp             HHTTTSS-EEEEECSSSSC--CCCHHHHHHHHHHHHTSSEEEECSCEEEEEEECSSSEEEEEEECC----------TTCC
T ss_pred             HHHhcCC-eEEEEEeCCcc--ccCHHHHHHHHHhcccCCeEEEcCceeEEEEcCCCceEEEEEEec----------cCCC
Confidence            9999986 79999987643  223222    22345689999999999999865557776776410          12 5


Q ss_pred             ceEEEECCEEEEcccccccCC
Q psy16200        162 QRIKLKANYIISAFGSTLLDN  182 (183)
Q Consensus       162 ~~~~i~~D~Vi~a~G~~p~~~  182 (183)
                      +..+++||.||+|+|++||++
T Consensus       230 ~~~~i~~D~vv~a~G~~p~~~  250 (320)
T 1trb_A          230 NIESLDVAGLFVAIGHSPNTA  250 (320)
T ss_dssp             CCEEEECSEEEECSCEEESCG
T ss_pred             ceEEEEcCEEEEEeCCCCChH
Confidence            557899999999999999864

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.68  E-value=6e-17  Score=133.89  Aligned_cols=132  Identities=17%  Similarity=0.195  Sum_probs=94.1

Q ss_pred             CCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHHH
Q psy16200          9 DGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSA   88 (183)
Q Consensus         9 ~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~l   88 (183)
                      ..||++|||||+ .|+.|++| | .  +++++..++.......            .....+++|+|||||++|+|+|..|
T Consensus       100 ~~~d~lViATGs-~p~~p~i~-G-~--~~v~~~~~~~~~~~l~------------~~~~~~~~vvViGgG~~g~E~A~~l  162 (367)
T 1xhc_A          100 VPYDTLVLATGA-RAREPQIK-G-K--EYLLTLRTIFDADRIK------------ESIENSGEAIIIGGGFIGLELAGNL  162 (367)
T ss_dssp             EECSEEEECCCE-EECCCCSB-T-G--GGEECCCSHHHHHHHH------------HHHHHHSEEEEEECSHHHHHHHHHH
T ss_pred             EECCEEEECCCC-CCCCCCCC-C-c--CCEEEEcCHHHHHHHH------------HHhhcCCcEEEECCCHHHHHHHHHH
Confidence            469999999998 58888899 5 2  4565433322211100            0011247799999999999999999


Q ss_pred             HHcCCceEEEEEeecCCcCCCCHHHH-----HHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCce
Q psy16200         89 LRCGANKVLVVFRKGCTNIRAVPEEV-----QLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQR  163 (183)
Q Consensus        89 ~~~G~~~V~lv~r~~~~~~~~~~~~~-----~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~  163 (183)
                      +++|. +|++++|++.. ++ .++++     +.+.+.||++++++.+.++..  +.   +++             .+|  
T Consensus       163 ~~~g~-~Vtlv~~~~~~-l~-~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~--~~---v~~-------------~~g--  219 (367)
T 1xhc_A          163 AEAGY-HVKLIHRGAMF-LG-LDEELSNMIKDMLEETGVKFFLNSELLEANE--EG---VLT-------------NSG--  219 (367)
T ss_dssp             HHTTC-EEEEECSSSCC-TT-CCHHHHHHHHHHHHHTTEEEECSCCEEEECS--SE---EEE-------------TTE--
T ss_pred             HhCCC-EEEEEeCCCee-cc-CCHHHHHHHHHHHHHCCCEEEcCCEEEEEEe--eE---EEE-------------CCC--
Confidence            99997 79999998754 55 43332     345788999999999988862  22   333             223  


Q ss_pred             EEEECCEEEEcccccccC
Q psy16200        164 IKLKANYIISAFGSTLLD  181 (183)
Q Consensus       164 ~~i~~D~Vi~a~G~~p~~  181 (183)
                      . ++||.||+|+|++||+
T Consensus       220 ~-i~~D~vi~a~G~~p~~  236 (367)
T 1xhc_A          220 F-IEGKVKICAIGIVPNV  236 (367)
T ss_dssp             E-EECSCEEEECCEEECC
T ss_pred             E-EEcCEEEECcCCCcCH
Confidence            2 9999999999999986

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=99.68  E-value=1.4e-16  Score=128.06  Aligned_cols=138  Identities=17%  Similarity=0.195  Sum_probs=102.0

Q ss_pred             CCCEEEEccCCC--CCcccCCCCCCccCC--CceehhhhHHHHhccccCCccCCCCCCCCCC-CcceEEEEcCChhHHHH
Q psy16200         10 GYTAIFIGIGKP--NANVIPIFQGLTEEM--GFYTSKTFLPRVATSSKKGLCGGCKKESLPI-LKGTVIVLGAGDTAFDC   84 (183)
Q Consensus        10 ~~davviATGa~--~p~~l~i~gg~~~~~--~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~VvViGgG~~g~e~   84 (183)
                      .||+||+|||+.  .|+.+++| |...+.  ++++  .+.                  +... .+++|+|||+|.+|+|+
T Consensus       111 ~~d~vVlAtG~~~~~p~~~~~~-g~~~~~g~~~~~--~~~------------------~~~~~~~~~v~vvG~g~~~~e~  169 (332)
T 3lzw_A          111 YSKTVIITAGNGAFKPRKLELE-NAEQYEGKNLHY--FVD------------------DLQKFAGRRVAILGGGDSAVDW  169 (332)
T ss_dssp             EEEEEEECCTTSCCEECCCCCT-TGGGGBTTTEES--SCS------------------CGGGGBTCEEEEECSSHHHHHH
T ss_pred             EeCEEEECCCCCcCCCCCCCCC-ChhhccCceEEE--ecC------------------CHHHcCCCEEEEECCCHhHHHH
Confidence            489999999982  37778888 533322  3332  111                  1112 35679999999999999


Q ss_pred             HHHHHHcCCceEEEEEeecCCcCCCCHHHHHHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCceE
Q psy16200         85 ATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRI  164 (183)
Q Consensus        85 A~~l~~~G~~~V~lv~r~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~  164 (183)
                      |..|++.|. +|++++|++.  +......+..+.+.||++++++.+.++..+++ +..+++.+.          .+++..
T Consensus       170 a~~l~~~~~-~v~~~~~~~~--~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~-~~~v~~~~~----------~~g~~~  235 (332)
T 3lzw_A          170 ALMLEPIAK-EVSIIHRRDK--FRAHEHSVENLHASKVNVLTPFVPAELIGEDK-IEQLVLEEV----------KGDRKE  235 (332)
T ss_dssp             HHHHTTTBS-EEEEECSSSS--CSSCHHHHHHHHHSSCEEETTEEEEEEECSSS-CCEEEEEET----------TSCCEE
T ss_pred             HHHHHhhCC-eEEEEEecCc--CCccHHHHHHHhcCCeEEEeCceeeEEecCCc-eEEEEEEec----------CCCceE
Confidence            999999986 7999998864  45556667778899999999999999986444 444666431          245667


Q ss_pred             EEECCEEEEcccccccCC
Q psy16200        165 KLKANYIISAFGSTLLDN  182 (183)
Q Consensus       165 ~i~~D~Vi~a~G~~p~~~  182 (183)
                      +++||.||+|+|+.|+++
T Consensus       236 ~~~~D~vv~a~G~~p~~~  253 (332)
T 3lzw_A          236 ILEIDDLIVNYGFVSSLG  253 (332)
T ss_dssp             EEECSEEEECCCEECCCG
T ss_pred             EEECCEEEEeeccCCCch
Confidence            899999999999999864

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=99.67  E-value=7.5e-16  Score=136.79  Aligned_cols=145  Identities=10%  Similarity=-0.021  Sum_probs=106.7

Q ss_pred             ChhhhhhCCCCEEEEccCCCC-------CcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEE
Q psy16200          2 PTLKLRKDGYTAIFIGIGKPN-------ANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIV   74 (183)
Q Consensus         2 ~~~~l~~~~~davviATGa~~-------p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvV   74 (183)
                      +.++..+..||+||+|||+..       |..+++| | .+..++++..+++..                 ....+++|+|
T Consensus       468 ~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~~~~i~-G-~~~~~v~~~~~~l~~-----------------~~~~g~~VvV  528 (690)
T 3k30_A          468 TGDDIVEFGFEHVITATGATWRTDGVARFHTTALP-I-AEGMQVLGPDDLFAG-----------------RLPDGKKVVV  528 (690)
T ss_dssp             CHHHHHHTTCCEEEECCCEEECSSCCSSSCSSCCC-B-CTTSEEECHHHHHTT-----------------CCCSSSEEEE
T ss_pred             cHHHHhhcCCCEEEEcCCCccccccccccCCCCCC-C-CCCCcEEcHHHHhCC-----------------CCCCCCEEEE
Confidence            456667778999999999841       3467788 4 566788888776642                 1234567999


Q ss_pred             Ec--CChhHHHHHHHHHHcCCceEEEEEeecCCcCC-----CCHHH-HHHHHHcCcEEEeCCcceEEEccCCcEEEEEEE
Q psy16200         75 LG--AGDTAFDCATSALRCGANKVLVVFRKGCTNIR-----AVPEE-VQLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFN  146 (183)
Q Consensus        75 iG--gG~~g~e~A~~l~~~G~~~V~lv~r~~~~~~~-----~~~~~-~~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~  146 (183)
                      ||  ||.+|+|+|..|++.|. +|+++++.+.. ++     ..... ...+.+.||++++++.+.++..+  .+   .+.
T Consensus       529 iG~ggG~~g~e~A~~L~~~g~-~Vtlv~~~~~l-~~~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~--~~---~v~  601 (690)
T 3k30_A          529 YDDDHYYLGGVVAELLAQKGY-EVSIVTPGAQV-SSWTNNTFEVNRIQRRLIENGVARVTDHAVVAVGAG--GV---TVR  601 (690)
T ss_dssp             EECSCSSHHHHHHHHHHHTTC-EEEEEESSSST-TGGGGGGTCHHHHHHHHHHTTCEEEESEEEEEEETT--EE---EEE
T ss_pred             EcCCCCccHHHHHHHHHhCCC-eeEEEeccccc-ccccccchhHHHHHHHHHHCCCEEEcCcEEEEEECC--eE---EEE
Confidence            99  99999999999999996 79999987653 22     12222 34567889999999999999742  22   222


Q ss_pred             EeeecCCCCeecCCCceEEEECCEEEEcccccccCC
Q psy16200        147 RTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDN  182 (183)
Q Consensus       147 ~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~  182 (183)
                      .          ..+++..+++||.||+|+|++||++
T Consensus       602 ~----------~~~~~~~~i~aD~VV~A~G~~p~~~  627 (690)
T 3k30_A          602 D----------TYASIERELECDAVVMVTARLPREE  627 (690)
T ss_dssp             E----------TTTCCEEEEECSEEEEESCEEECCH
T ss_pred             E----------ccCCeEEEEECCEEEECCCCCCChH
Confidence            1          1345667899999999999999863

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=99.67  E-value=1.4e-16  Score=129.26  Aligned_cols=140  Identities=22%  Similarity=0.272  Sum_probs=98.1

Q ss_pred             CCCCEEEEccCCCCCcccCCCCCCccC--CCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHH
Q psy16200          9 DGYTAIFIGIGKPNANVIPIFQGLTEE--MGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCAT   86 (183)
Q Consensus         9 ~~~davviATGa~~p~~l~i~gg~~~~--~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~   86 (183)
                      ..||.||+|||+. |+.|++| |...+  .++++.. ....                 ....+++|+|||+|.+|+|+|.
T Consensus       113 ~~~d~lviAtG~~-~~~~~i~-g~~~~~~~~~~~~~-~~~~-----------------~~~~~~~v~ViG~G~~g~e~a~  172 (335)
T 2a87_A          113 HRARAVILAMGAA-ARYLQVP-GEQELLGRGVSSCA-TCDG-----------------FFFRDQDIAVIGGGDSAMEEAT  172 (335)
T ss_dssp             EEEEEEEECCCEE-ECCCCCT-HHHHTBTTTEESCH-HHHG-----------------GGGTTCEEEEECSSHHHHHHHH
T ss_pred             EEeCEEEECCCCC-ccCCCCC-chHhccCCceEEee-ccch-----------------hhcCCCEEEEECCCHHHHHHHH
Confidence            4689999999984 8888888 43222  2343321 1111                 1223577999999999999999


Q ss_pred             HHHHcCCceEEEEEeecCCcCCCCHHHHHHH-HHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCceEE
Q psy16200         87 SALRCGANKVLVVFRKGCTNIRAVPEEVQLA-WEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIK  165 (183)
Q Consensus        87 ~l~~~G~~~V~lv~r~~~~~~~~~~~~~~~~-~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~  165 (183)
                      .|++.|. +|++++|++..  ........++ .+.||++++++.+.++..+ +++.++++...          .+|+..+
T Consensus       173 ~l~~~g~-~V~l~~~~~~~--~~~~~~~~~~~~~~gV~v~~~~~v~~i~~~-~~~~~v~~~~~----------~~g~~~~  238 (335)
T 2a87_A          173 FLTRFAR-SVTLVHRRDEF--RASKIMLDRARNNDKIRFLTNHTVVAVDGD-TTVTGLRVRDT----------NTGAETT  238 (335)
T ss_dssp             HHTTTCS-EEEEECSSSSC--SSCTTHHHHHHHCTTEEEECSEEEEEEECS-SSCCEEEEEEE----------TTSCCEE
T ss_pred             HHHHhCC-eEEEEEcCCcC--CccHHHHHHHhccCCcEEEeCceeEEEecC-CcEeEEEEEEc----------CCCceEE
Confidence            9999986 79999988653  2222222233 5689999999999999864 34444555421          2455578


Q ss_pred             EECCEEEEcccccccCC
Q psy16200        166 LKANYIISAFGSTLLDN  182 (183)
Q Consensus       166 i~~D~Vi~a~G~~p~~~  182 (183)
                      ++||.||+|+|++||++
T Consensus       239 i~~D~vi~a~G~~p~~~  255 (335)
T 2a87_A          239 LPVTGVFVAIGHEPRSG  255 (335)
T ss_dssp             ECCSCEEECSCEEECCT
T ss_pred             eecCEEEEccCCccChh
Confidence            99999999999999874

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=99.67  E-value=4.4e-16  Score=132.10  Aligned_cols=133  Identities=18%  Similarity=0.190  Sum_probs=99.5

Q ss_pred             CCCCEEEEccCCCCCc-ccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHH
Q psy16200          9 DGYTAIFIGIGKPNAN-VIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATS   87 (183)
Q Consensus         9 ~~~davviATGa~~p~-~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~   87 (183)
                      ..||++|||||+ .|+ .|++| | .+  .++++.+++.                  ....+++++|||||++|+|+|..
T Consensus       132 ~~~d~lviAtG~-~p~~~p~i~-G-~~--~~~~~~~~~~------------------~~~~~~~v~ViGgG~~g~e~A~~  188 (463)
T 4dna_A          132 VTAERIVIAVGG-HPSPHDALP-G-HE--LCITSNEAFD------------------LPALPESILIAGGGYIAVEFANI  188 (463)
T ss_dssp             EEEEEEEECCCE-EECCCTTST-T-GG--GCBCHHHHTT------------------CSSCCSEEEEECCSHHHHHHHHH
T ss_pred             EEeCEEEEecCC-CcccCCCCC-C-cc--ccccHHHHhh------------------hhcCCCeEEEECCCHHHHHHHHH
Confidence            468999999998 488 78898 5 33  3555555442                  23456889999999999999999


Q ss_pred             HHHcCCceEEEEEeecCCcCCCCHHHH-----HHHHHcCcEEEeCCcceEEEccCCcEEEEE-EEEeeecCCCCeecCCC
Q psy16200         88 ALRCGANKVLVVFRKGCTNIRAVPEEV-----QLAWEEKCEFLPFMSPVQVDVKDNKIAGMQ-FNRTEQNEKGEWVEDEE  161 (183)
Q Consensus        88 l~~~G~~~V~lv~r~~~~~~~~~~~~~-----~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~-~~~~~~~~~~~~~~~~g  161 (183)
                      +.++|. +|+++++++.. ++..+.++     +.+.+.||++++++.+.++..+++....++ +             .+|
T Consensus       189 l~~~g~-~Vt~v~~~~~~-l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~-------------~~g  253 (463)
T 4dna_A          189 FHGLGV-KTTLIYRGKEI-LSRFDQDMRRGLHAAMEEKGIRILCEDIIQSVSADADGRRVATTM-------------KHG  253 (463)
T ss_dssp             HHHTTC-EEEEECSSSSS-STTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEECTTSCEEEEES-------------SSC
T ss_pred             HHHcCC-eEEEEEcCCcc-ccccCHHHHHHHHHHHHHCCCEEECCCEEEEEEEcCCCEEEEEEc-------------CCC
Confidence            999997 79999998754 45544333     245678999999999999976434322233 2             233


Q ss_pred             ceEEEECCEEEEcccccccCC
Q psy16200        162 QRIKLKANYIISAFGSTLLDN  182 (183)
Q Consensus       162 ~~~~i~~D~Vi~a~G~~p~~~  182 (183)
                      +   ++||.||+|+|+.||++
T Consensus       254 ~---i~aD~Vv~a~G~~p~~~  271 (463)
T 4dna_A          254 E---IVADQVMLALGRMPNTN  271 (463)
T ss_dssp             E---EEESEEEECSCEEESCT
T ss_pred             e---EEeCEEEEeeCcccCCC
Confidence            2   89999999999999975

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=99.67  E-value=4.7e-16  Score=125.68  Aligned_cols=140  Identities=19%  Similarity=0.217  Sum_probs=96.9

Q ss_pred             CCCCEEEEccCCC--CCcccCCCCCCccCC--CceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHH
Q psy16200          9 DGYTAIFIGIGKP--NANVIPIFQGLTEEM--GFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDC   84 (183)
Q Consensus         9 ~~~davviATGa~--~p~~l~i~gg~~~~~--~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~   84 (183)
                      ..||.||+|||+.  .|+.+++| |...+.  ++++.   +..                .....+++|+|||+|++|+|+
T Consensus       108 ~~~~~lv~AtG~~~~~p~~~~i~-g~~~~~~~~~~~~---~~~----------------~~~~~~~~v~viG~G~~g~e~  167 (335)
T 2zbw_A          108 YTAKAVIIAAGVGAFEPRRIGAP-GEREFEGRGVYYA---VKS----------------KAEFQGKRVLIVGGGDSAVDW  167 (335)
T ss_dssp             EEEEEEEECCTTSEEEECCCCCT-TTTTTBTTTEESS---CSC----------------GGGGTTCEEEEECSSHHHHHH
T ss_pred             EEeCEEEECCCCCCCCCCCCCCC-ChhhccCcEEEEe---cCc----------------hhhcCCCEEEEECCCHHHHHH
Confidence            3589999999984  36667788 432222  22221   000                001235779999999999999


Q ss_pred             HHHHHHcCCceEEEEEeecCCcCCCCHHHHHH----HHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCC
Q psy16200         85 ATSALRCGANKVLVVFRKGCTNIRAVPEEVQL----AWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDE  160 (183)
Q Consensus        85 A~~l~~~G~~~V~lv~r~~~~~~~~~~~~~~~----~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~  160 (183)
                      |..|++.|. +|++++|++..  .........    +.+.||++++++.+.++.. ++++..+++...          .+
T Consensus       168 a~~l~~~g~-~V~~v~~~~~~--~~~~~~~~~l~~~l~~~gv~v~~~~~v~~i~~-~~~~~~v~~~~~----------~~  233 (335)
T 2zbw_A          168 ALNLLDTAR-RITLIHRRPQF--RAHEASVKELMKAHEEGRLEVLTPYELRRVEG-DERVRWAVVFHN----------QT  233 (335)
T ss_dssp             HHHTTTTSS-EEEEECSSSSC--CSCHHHHHHHHHHHHTTSSEEETTEEEEEEEE-SSSEEEEEEEET----------TT
T ss_pred             HHHHHhhCC-EEEEEEcCCcc--CccHHHHHHHHhccccCCeEEecCCcceeEcc-CCCeeEEEEEEC----------CC
Confidence            999999986 79999998642  223332222    3455999999999999986 456655666421          24


Q ss_pred             CceEEEECCEEEEcccccccCC
Q psy16200        161 EQRIKLKANYIISAFGSTLLDN  182 (183)
Q Consensus       161 g~~~~i~~D~Vi~a~G~~p~~~  182 (183)
                      |+..++++|.||+|+|++|+++
T Consensus       234 g~~~~i~~D~vi~a~G~~p~~~  255 (335)
T 2zbw_A          234 QEELALEVDAVLILAGYITKLG  255 (335)
T ss_dssp             CCEEEEECSEEEECCCEEEECG
T ss_pred             CceEEEecCEEEEeecCCCCch
Confidence            5567899999999999999863

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=99.67  E-value=4.3e-16  Score=135.72  Aligned_cols=141  Identities=13%  Similarity=0.143  Sum_probs=102.9

Q ss_pred             CCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHHH
Q psy16200          9 DGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSA   88 (183)
Q Consensus         9 ~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~l   88 (183)
                      ..||++|||||+ .|+.|++| |+.+.+++++..++.........          -....+++|+|||||++|+|+|..|
T Consensus       139 ~~~d~lviAtG~-~p~~p~i~-G~~~~~~v~~~~~~~~~~~~~~~----------l~~~~~~~vvViGgG~~g~e~A~~l  206 (588)
T 3ics_A          139 EAYDVLILSPGA-KPIVPSIP-GIEEAKALFTLRNVPDTDRIKAY----------IDEKKPRHATVIGGGFIGVEMVENL  206 (588)
T ss_dssp             EECSEEEECCCE-EECCCCCT-TTTTCTTEEECSSHHHHHHHHHH----------HHHHCCSEEEEECCSHHHHHHHHHH
T ss_pred             EeCCEEEECCCC-CCCCCCCC-CcccCCCeEEeCCHHHHHHHHHH----------HhhcCCCeEEEECCCHHHHHHHHHH
Confidence            469999999998 58888999 53367788776655443211000          0012457899999999999999999


Q ss_pred             HHcCCceEEEEEeecCCcCCCCHHHH-----HHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCce
Q psy16200         89 LRCGANKVLVVFRKGCTNIRAVPEEV-----QLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQR  163 (183)
Q Consensus        89 ~~~G~~~V~lv~r~~~~~~~~~~~~~-----~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~  163 (183)
                      ++.|. +|+++++++.. ++..+.++     +.+.+.||++++++.+.++..+++.   +++             .+|+ 
T Consensus       207 ~~~g~-~Vtlv~~~~~~-l~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~---v~~-------------~~g~-  267 (588)
T 3ics_A          207 RERGI-EVTLVEMANQV-MPPIDYEMAAYVHEHMKNHDVELVFEDGVDALEENGAV---VRL-------------KSGS-  267 (588)
T ss_dssp             HHTTC-EEEEECSSSSS-CTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEGGGTE---EEE-------------TTSC-
T ss_pred             HhCCC-eEEEEecCCcc-cccCCHHHHHHHHHHHHHcCCEEEECCeEEEEecCCCE---EEE-------------CCCC-
Confidence            99997 79999998754 55443332     3456789999999999999764333   333             2333 


Q ss_pred             EEEECCEEEEcccccccC
Q psy16200        164 IKLKANYIISAFGSTLLD  181 (183)
Q Consensus       164 ~~i~~D~Vi~a~G~~p~~  181 (183)
                       +++||.||+|+|++||+
T Consensus       268 -~i~~D~Vi~a~G~~p~~  284 (588)
T 3ics_A          268 -VIQTDMLILAIGVQPES  284 (588)
T ss_dssp             -EEECSEEEECSCEEECC
T ss_pred             -EEEcCEEEEccCCCCCh
Confidence             68999999999999986

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=99.65  E-value=6.3e-16  Score=136.85  Aligned_cols=136  Identities=14%  Similarity=0.173  Sum_probs=98.8

Q ss_pred             CCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHHHH
Q psy16200         10 GYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSAL   89 (183)
Q Consensus        10 ~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~l~   89 (183)
                      .||+||||||+ .|+.|++| | .+..++++..+++..                 ....+++|+|||||++|+|+|..|+
T Consensus       455 ~~d~lviAtG~-~p~~~~i~-G-~~~~~v~~~~~~l~~-----------------~~~~~~~VvVIGgG~~g~E~A~~l~  514 (671)
T 1ps9_A          455 AFDETILASGI-VPRTPPID-G-IDHPKVLSYLDVLRD-----------------KAPVGNKVAIIGCGGIGFDTAMYLS  514 (671)
T ss_dssp             CSSEEEECCCE-EECCCCCB-T-TTSTTEEEHHHHHTS-----------------CCCCCSEEEEECCHHHHHHHHHHHT
T ss_pred             cCCEEEEccCC-CcCCCCCC-C-CCCCcEeeHHHHhhC-----------------CCCCCCeEEEECCChhHHHHHHHHH
Confidence            69999999999 58889999 5 566788887666531                 1234678999999999999999999


Q ss_pred             HcCC------------------------------------ceEEEEEeecCCcCCC----CHHH-HHHHHHcCcEEEeCC
Q psy16200         90 RCGA------------------------------------NKVLVVFRKGCTNIRA----VPEE-VQLAWEEKCEFLPFM  128 (183)
Q Consensus        90 ~~G~------------------------------------~~V~lv~r~~~~~~~~----~~~~-~~~~~~~gv~~~~~~  128 (183)
                      +.|.                                    ++|+++++.+......    .... ...+.+.||++++++
T Consensus       515 ~~G~~vtv~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~l~~~l~~~~~~~~~~~l~~~GV~v~~~~  594 (671)
T 1ps9_A          515 QPGESTSQNIAGFCNEWGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQRKASKPGQGLGKTTGWIHRTTLLSRGVKMIPGV  594 (671)
T ss_dssp             CCSSCGGGCHHHHHHHTTBCTTCCSGGGBCTTCCCCCCCSSEEEEECSSCSCTTTTSCTTTHHHHHHHHHHTTCEEECSC
T ss_pred             hcCCCcccchhhhhhhhcccccccccccccccccccCCCCcEEEEEEecchhhccccccccHHHHHHHHHhcCCEEEeCc
Confidence            8773                                    3567777654321111    1112 245678899999999


Q ss_pred             cceEEEccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccccccCC
Q psy16200        129 SPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDN  182 (183)
Q Consensus       129 ~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~  182 (183)
                      .+.++..  +.+   ++.            .+|+..+++||+||+|+|++||++
T Consensus       595 ~v~~i~~--~~v---~~~------------~~G~~~~i~~D~Vi~a~G~~p~~~  631 (671)
T 1ps9_A          595 SYQKIDD--DGL---HVV------------INGETQVLAVDNVVICAGQEPNRA  631 (671)
T ss_dssp             EEEEEET--TEE---EEE------------ETTEEEEECCSEEEECCCEEECCT
T ss_pred             EEEEEeC--CeE---EEe------------cCCeEEEEeCCEEEECCCccccHH
Confidence            9988873  333   231            145567899999999999999975

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=99.65  E-value=1.5e-17  Score=138.42  Aligned_cols=127  Identities=13%  Similarity=0.127  Sum_probs=90.8

Q ss_pred             hCCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHH
Q psy16200          8 KDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATS   87 (183)
Q Consensus         8 ~~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~   87 (183)
                      ...||++|||||+ .|+.|++| | .+  ++++..++-......            .....+++|+|||||++|+|+|..
T Consensus       102 ~~~yd~lvlAtG~-~p~~p~i~-G-~~--~v~~~~~~~d~~~l~------------~~l~~~~~vvVIGgG~~g~E~A~~  164 (385)
T 3klj_A          102 KIKYEKLIIASGS-IANKIKVP-H-AD--EIFSLYSYDDALKIK------------DECKNKGKAFIIGGGILGIELAQA  164 (385)
T ss_dssp             EEECSEEEECCCE-EECCCCCT-T-CS--CEECCSSHHHHHHHH------------HHHHHHSCEEEECCSHHHHHHHHH
T ss_pred             EEECCEEEEecCC-CcCCCCCC-C-CC--CeEEeCCHHHHHHHH------------HHhhcCCeEEEECCCHHHHHHHHH
Confidence            3469999999999 59989999 5 44  666533222111100            001125779999999999999999


Q ss_pred             HHHcCCceEEEEEeecCCcCCC-CHHHH-----HHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCC
Q psy16200         88 ALRCGANKVLVVFRKGCTNIRA-VPEEV-----QLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEE  161 (183)
Q Consensus        88 l~~~G~~~V~lv~r~~~~~~~~-~~~~~-----~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g  161 (183)
                      |+++|. +|+++++++.. ++. .+.++     +.+.+.||+++++..+.++ +                          
T Consensus       165 l~~~g~-~Vtvv~~~~~~-l~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i-g--------------------------  215 (385)
T 3klj_A          165 IIDSGT-PASIGIILEYP-LERQLDRDGGLFLKDKLDRLGIKIYTNSNFEEM-G--------------------------  215 (385)
T ss_dssp             HHHHTC-CEEEECSSSSS-CTTTSCHHHHHHHHHHHHTTTCEEECSCCGGGC-H--------------------------
T ss_pred             HHhCCC-eEEEEEcCCcc-chhhcCHHHHHHHHHHHHhCCCEEEeCCEEEEc-C--------------------------
Confidence            999997 69999998764 443 33332     2356789999998887654 1                          


Q ss_pred             ceEEEECCEEEEcccccccCC
Q psy16200        162 QRIKLKANYIISAFGSTLLDN  182 (183)
Q Consensus       162 ~~~~i~~D~Vi~a~G~~p~~~  182 (183)
                        .+++||.||+|+|++||++
T Consensus       216 --~~~~~D~vv~a~G~~p~~~  234 (385)
T 3klj_A          216 --DLIRSSCVITAVGVKPNLD  234 (385)
T ss_dssp             --HHHHHSEEEECCCEEECCG
T ss_pred             --eEEecCeEEECcCcccChh
Confidence              1478999999999999864

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=99.65  E-value=1.3e-15  Score=124.56  Aligned_cols=141  Identities=14%  Similarity=0.198  Sum_probs=98.5

Q ss_pred             CCCCEEEEccCCC--CCcccCCCCC-CccCCC--ceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHH
Q psy16200          9 DGYTAIFIGIGKP--NANVIPIFQG-LTEEMG--FYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFD   83 (183)
Q Consensus         9 ~~~davviATGa~--~p~~l~i~gg-~~~~~~--V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e   83 (183)
                      ..||.||+|||+.  .|+.+++| | +.++.+  +++..   ..                .....+++|+|||+|++|+|
T Consensus       118 ~~~~~li~AtG~~~~~~~~~~i~-g~~~~~~~~~v~~~~---~~----------------~~~~~~~~vvVvG~G~~g~e  177 (360)
T 3ab1_A          118 YRSRAVLIAAGLGAFEPRKLPQL-GNIDHLTGSSVYYAV---KS----------------VEDFKGKRVVIVGGGDSALD  177 (360)
T ss_dssp             EEEEEEEECCTTCSCCBCCCGGG-CCCTTTBTTTEESSC---SC----------------GGGGTTCEEEEECSSHHHHH
T ss_pred             EEeeEEEEccCCCcCCCCCCCCC-CchhhCcCceEEEec---CC----------------HHHcCCCcEEEECCCHHHHH
Confidence            3589999999984  36666777 5 333322  33211   00                00123567999999999999


Q ss_pred             HHHHHHHcCCceEEEEEeecCCcCCCCH--HH-HHHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCC
Q psy16200         84 CATSALRCGANKVLVVFRKGCTNIRAVP--EE-VQLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDE  160 (183)
Q Consensus        84 ~A~~l~~~G~~~V~lv~r~~~~~~~~~~--~~-~~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~  160 (183)
                      +|..|.+.|. +|++++|++.. .+...  .. .....+.||++++++.+.++..+++++.++++..           .+
T Consensus       178 ~A~~l~~~g~-~V~lv~~~~~~-~~~~~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~~~v~~v~~~~-----------~~  244 (360)
T 3ab1_A          178 WTVGLIKNAA-SVTLVHRGHEF-QGHGKTAHEVERARANGTIDVYLETEVASIEESNGVLTRVHLRS-----------SD  244 (360)
T ss_dssp             HHHHTTTTSS-EEEEECSSSSC-SSCSHHHHSSHHHHHHTSEEEESSEEEEEEEEETTEEEEEEEEE-----------TT
T ss_pred             HHHHHHhcCC-EEEEEEcCCCC-CCCHHHHHHHHHHhhcCceEEEcCcCHHHhccCCCceEEEEEEe-----------cC
Confidence            9999999986 79999987643 22221  11 1234567899999999999987667776666631           24


Q ss_pred             CceEEEECCEEEEcccccccCC
Q psy16200        161 EQRIKLKANYIISAFGSTLLDN  182 (183)
Q Consensus       161 g~~~~i~~D~Vi~a~G~~p~~~  182 (183)
                      |+..++++|.||+|+|+.||++
T Consensus       245 g~~~~i~~D~vi~a~G~~p~~~  266 (360)
T 3ab1_A          245 GSKWTVEADRLLILIGFKSNLG  266 (360)
T ss_dssp             CCEEEEECSEEEECCCBCCSCG
T ss_pred             CCeEEEeCCEEEECCCCCCCHH
Confidence            5567899999999999999863

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=99.64  E-value=1.9e-15  Score=127.68  Aligned_cols=145  Identities=10%  Similarity=0.095  Sum_probs=96.7

Q ss_pred             CCCCEEEEccCCCCCcccC-CCCCCccCC-CceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHH
Q psy16200          9 DGYTAIFIGIGKPNANVIP-IFQGLTEEM-GFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCAT   86 (183)
Q Consensus         9 ~~~davviATGa~~p~~l~-i~gg~~~~~-~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~   86 (183)
                      ..||+||+|||+ .|+.|+ ++ + .... .++++.+++...... +          .....+++|+|||||++|+|+|.
T Consensus       179 ~~~d~lVlAtG~-~p~~p~~~~-~-~~~~~~~~~~~~~~~~~~~~-~----------~~~~~~~~vvVvGgG~sg~e~a~  244 (463)
T 3s5w_A          179 RTTRALVVSPGG-TPRIPQVFR-A-LKGDGRVFHHSQYLEHMAKQ-P----------CSSGKPMKIAIIGGGQSAAEAFI  244 (463)
T ss_dssp             EEESEEEECCCC-EECCCGGGG-G-GTTCTTEEEGGGHHHHHCC------------------CEEEEEECCSHHHHHHHH
T ss_pred             EEeCEEEECCCC-CCCCcchhh-h-cCCCCcEEECHHHHhhHHHh-h----------hcccCCCeEEEECCCHhHHHHHH
Confidence            458999999998 476555 33 2 2222 567777776543110 0          00113567999999999999999


Q ss_pred             HHHHc--CCceEEEEEeecCCcCCCCH--------------------HH-----HHHHHH--------------------
Q psy16200         87 SALRC--GANKVLVVFRKGCTNIRAVP--------------------EE-----VQLAWE--------------------  119 (183)
Q Consensus        87 ~l~~~--G~~~V~lv~r~~~~~~~~~~--------------------~~-----~~~~~~--------------------  119 (183)
                      .|++.  +. +|++++|++.. +|...                    .+     +.....                    
T Consensus       245 ~l~~~~~~~-~Vt~v~r~~~~-~p~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  322 (463)
T 3s5w_A          245 DLNDSYPSV-QADMILRASAL-KPADDSPFVNEVFAPKFTDLIYSREHAERERLLREYHNTNYSVVDTDLIERIYGVFYR  322 (463)
T ss_dssp             HHHHHCTTE-EEEEECSSSSC-CBCCCCHHHHGGGSHHHHHHHHHSCHHHHHHHHHHTGGGTSSCBCHHHHHHHHHHHHH
T ss_pred             HHHhcCCCC-eEEEEEeCCCC-cCccCCccchhccChhHHHHHhcCCHHHHHHHHHHhhccCCCcCCHHHHHHHHHHHHH
Confidence            99998  75 79999998753 33210                    00     000011                    


Q ss_pred             ------cCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEccccccc
Q psy16200        120 ------EKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLL  180 (183)
Q Consensus       120 ------~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~  180 (183)
                            .||.+++++.+.++..+++.+. +++..          ..+|+..+++||.||+|+|++|+
T Consensus       323 ~~~~~~~~v~i~~~~~v~~v~~~~~~~~-v~~~~----------~~~g~~~~~~~D~Vv~AtG~~p~  378 (463)
T 3s5w_A          323 QKVSGIPRHAFRCMTTVERATATAQGIE-LALRD----------AGSGELSVETYDAVILATGYERQ  378 (463)
T ss_dssp             HHHHCCCCSEEETTEEEEEEEEETTEEE-EEEEE----------TTTCCEEEEEESEEEECCCEECC
T ss_pred             HHhcCCCCeEEEeCCEEEEEEecCCEEE-EEEEE----------cCCCCeEEEECCEEEEeeCCCCC
Confidence                  5899999999999876555443 55532          13567778999999999999998

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=99.64  E-value=1.5e-15  Score=129.46  Aligned_cols=133  Identities=17%  Similarity=0.177  Sum_probs=98.6

Q ss_pred             CCCCEEEEccCCCCCc-ccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHH
Q psy16200          9 DGYTAIFIGIGKPNAN-VIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATS   87 (183)
Q Consensus         9 ~~~davviATGa~~p~-~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~   87 (183)
                      ..||++|||||+. |. .|++| | .+  .++++.+++.                  ....+++|+|||+|++|+|+|..
T Consensus       153 ~~~d~lviAtG~~-p~~~p~i~-G-~~--~~~~~~~~~~------------------~~~~~~~v~ViGgG~~g~e~A~~  209 (484)
T 3o0h_A          153 ISAEKILIATGAK-IVSNSAIK-G-SD--LCLTSNEIFD------------------LEKLPKSIVIVGGGYIGVEFANI  209 (484)
T ss_dssp             EEEEEEEECCCEE-ECCC--CB-T-GG--GSBCTTTGGG------------------CSSCCSEEEEECCSHHHHHHHHH
T ss_pred             EEeCEEEEccCCC-cccCCCCC-C-cc--ccccHHHHHh------------------HHhcCCcEEEECcCHHHHHHHHH
Confidence            4689999999984 77 78888 5 33  3555555442                  13456889999999999999999


Q ss_pred             HHHcCCceEEEEEeecCCcCCCCHHHH-----HHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCc
Q psy16200         88 ALRCGANKVLVVFRKGCTNIRAVPEEV-----QLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQ  162 (183)
Q Consensus        88 l~~~G~~~V~lv~r~~~~~~~~~~~~~-----~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~  162 (183)
                      +.++|. +|+++++++.. ++..+.++     +.+.+.||++++++.+.++..+++.+. +++             .+| 
T Consensus       210 l~~~g~-~Vtli~~~~~~-l~~~~~~~~~~l~~~l~~~Gv~i~~~~~V~~i~~~~~~v~-v~~-------------~~g-  272 (484)
T 3o0h_A          210 FHGLGV-KTTLLHRGDLI-LRNFDYDLRQLLNDAMVAKGISIIYEATVSQVQSTENCYN-VVL-------------TNG-  272 (484)
T ss_dssp             HHHTTC-EEEEECSSSSS-STTSCHHHHHHHHHHHHHHTCEEESSCCEEEEEECSSSEE-EEE-------------TTS-
T ss_pred             HHHcCC-eEEEEECCCcc-ccccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEeeCCEEE-EEE-------------CCC-
Confidence            999997 79999988654 45443332     235678999999999999986555552 433             233 


Q ss_pred             eEEEECCEEEEcccccccCC
Q psy16200        163 RIKLKANYIISAFGSTLLDN  182 (183)
Q Consensus       163 ~~~i~~D~Vi~a~G~~p~~~  182 (183)
                       .+++||.||+|+|++||++
T Consensus       273 -~~i~aD~Vi~A~G~~p~~~  291 (484)
T 3o0h_A          273 -QTICADRVMLATGRVPNTT  291 (484)
T ss_dssp             -CEEEESEEEECCCEEECCT
T ss_pred             -cEEEcCEEEEeeCCCcCCC
Confidence             3689999999999999975

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=99.61  E-value=4.6e-15  Score=126.13  Aligned_cols=125  Identities=20%  Similarity=0.257  Sum_probs=88.2

Q ss_pred             CCCCEEEEccCC-CCCcccCCCCCCccCCC-ceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHH
Q psy16200          9 DGYTAIFIGIGK-PNANVIPIFQGLTEEMG-FYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCAT   86 (183)
Q Consensus         9 ~~~davviATGa-~~p~~l~i~gg~~~~~~-V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~   86 (183)
                      ..||+||+|||. ..|+.|++| |+..+++ ++++.++...                 ....+++|+|||||++|+|+|.
T Consensus       153 ~~~d~VVvAtG~~s~p~~p~ip-G~~~~~g~~~hs~~~~~~-----------------~~~~~k~VvVVG~G~sg~eiA~  214 (464)
T 2xve_A          153 EEFDYVVCCTGHFSTPYVPEFE-GFEKFGGRILHAHDFRDA-----------------LEFKDKTVLLVGSSYSAEDIGS  214 (464)
T ss_dssp             EEESEEEECCCSSSSBCCCCCB-TTTTCCSEEEEGGGCCCG-----------------GGGTTSEEEEECCSTTHHHHHH
T ss_pred             EEcCEEEECCCCCCCCccCCCC-CcccCCceEEehhhhCCH-----------------hHcCCCEEEEEcCCCCHHHHHH
Confidence            469999999993 158888899 6545454 5555544321                 1224577999999999999999


Q ss_pred             HHHHcCCceEEEEEeecCCcCCCCHHHHHHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCceEEE
Q psy16200         87 SALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKL  166 (183)
Q Consensus        87 ~l~~~G~~~V~lv~r~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i  166 (183)
                      .|++.|. +|++++|++.. ++..       ...||.++  ..+.++.+  +.   +++             .+|+  ++
T Consensus       215 ~l~~~g~-~V~li~~~~~~-~~~~-------~~~~V~~~--~~V~~i~~--~~---V~~-------------~dG~--~i  263 (464)
T 2xve_A          215 QCYKYGA-KKLISCYRTAP-MGYK-------WPENWDER--PNLVRVDT--EN---AYF-------------ADGS--SE  263 (464)
T ss_dssp             HHHHTTC-SEEEEECSSCC-CCCC-------CCTTEEEC--SCEEEECS--SE---EEE-------------TTSC--EE
T ss_pred             HHHHhCC-eEEEEEECCCC-CCCC-------CCCceEEc--CCeEEEeC--CE---EEE-------------CCCC--EE
Confidence            9999986 69999998653 3221       12477776  56666642  22   334             2444  57


Q ss_pred             ECCEEEEcccccccCC
Q psy16200        167 KANYIISAFGSTLLDN  182 (183)
Q Consensus       167 ~~D~Vi~a~G~~p~~~  182 (183)
                      ++|.||+|+|++|+.+
T Consensus       264 ~~D~Vi~atG~~p~~~  279 (464)
T 2xve_A          264 KVDAIILCTGYIHHFP  279 (464)
T ss_dssp             ECSEEEECCCBCCCCT
T ss_pred             eCCEEEECCCCCCCCC
Confidence            9999999999999864

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=99.59  E-value=1.6e-15  Score=129.90  Aligned_cols=140  Identities=16%  Similarity=0.218  Sum_probs=93.4

Q ss_pred             CCCCEEEEccCCCCCcccCCCCCCc-c-CCCceeh---hhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHH
Q psy16200          9 DGYTAIFIGIGKPNANVIPIFQGLT-E-EMGFYTS---KTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFD   83 (183)
Q Consensus         9 ~~~davviATGa~~p~~l~i~gg~~-~-~~~V~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e   83 (183)
                      ..||++|||||+ .|+.++++++.. + .+++++.   .++.....               ....+++|+|||||++|+|
T Consensus       131 i~yd~lviATGs-~p~~~~~~~~~~~~~~~~v~~~~~~~d~~~l~~---------------~~~~~~~vvViGgG~iG~E  194 (493)
T 1m6i_A          131 ITYEKCLIATGG-TPRSLSAIDRAGAEVKSRTTLFRKIGDFRSLEK---------------ISREVKSITIIGGGFLGSE  194 (493)
T ss_dssp             EEEEEEEECCCE-EECCCHHHHTSCHHHHHTEEECCSHHHHHHHHH---------------HHHHCSEEEEECCSHHHHH
T ss_pred             EECCEEEECCCC-CCCCCCCcccccccccCceEEEcCHHHHHHHHH---------------HhhcCCeEEEECCCHHHHH
Confidence            369999999998 488777763210 1 2344432   22221111               0123578999999999999


Q ss_pred             HHHHHHH----cCCceEEEEEeecCCcCCC-CHHH-----HHHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCC
Q psy16200         84 CATSALR----CGANKVLVVFRKGCTNIRA-VPEE-----VQLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEK  153 (183)
Q Consensus        84 ~A~~l~~----~G~~~V~lv~r~~~~~~~~-~~~~-----~~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~  153 (183)
                      +|..|++    .|. +|+++++++.. ++. .+.+     .+.+.+.||++++++.+.++..+++.+ .+++        
T Consensus       195 ~A~~l~~~~~~~g~-~V~~v~~~~~~-~~~~l~~~~~~~~~~~l~~~GV~v~~~~~V~~i~~~~~~~-~v~l--------  263 (493)
T 1m6i_A          195 LACALGRKARALGT-EVIQLFPEKGN-MGKILPEYLSNWTMEKVRREGVKVMPNAIVQSVGVSSGKL-LIKL--------  263 (493)
T ss_dssp             HHHHHHHHHHHHTC-EEEEECSSSST-TTTTSCHHHHHHHHHHHHTTTCEEECSCCEEEEEEETTEE-EEEE--------
T ss_pred             HHHHHHhhhhhcCC-EEEEEecCccc-ccccCCHHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCeE-EEEE--------
Confidence            9999876    466 69999886532 221 1222     234567899999999999997644444 2433        


Q ss_pred             CCeecCCCceEEEECCEEEEcccccccCC
Q psy16200        154 GEWVEDEEQRIKLKANYIISAFGSTLLDN  182 (183)
Q Consensus       154 ~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~  182 (183)
                           .+|+  +++||.||+|+|++||++
T Consensus       264 -----~dG~--~i~aD~Vv~a~G~~pn~~  285 (493)
T 1m6i_A          264 -----KDGR--KVETDHIVAAVGLEPNVE  285 (493)
T ss_dssp             -----TTSC--EEEESEEEECCCEEECCT
T ss_pred             -----CCCC--EEECCEEEECCCCCccHH
Confidence                 2343  689999999999999974

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=99.59  E-value=8.2e-15  Score=115.97  Aligned_cols=129  Identities=9%  Similarity=0.096  Sum_probs=91.8

Q ss_pred             CCCCEEEEccCCCCCcccCCCCCCccC--CCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHH
Q psy16200          9 DGYTAIFIGIGKPNANVIPIFQGLTEE--MGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCAT   86 (183)
Q Consensus         9 ~~~davviATGa~~p~~l~i~gg~~~~--~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~   86 (183)
                      ..||+||+|||+. |+.|++| |+...  .++++.. +...                 ....+++|+|||+|.+|+|+|.
T Consensus        99 ~~~d~vviAtG~~-~~~~~~~-g~~~~~~~~~~~~~-~~~~-----------------~~~~~~~v~vvG~G~~~~e~a~  158 (297)
T 3fbs_A           99 ETAGRLILAMGVT-DELPEIA-GLRERWGSAVFHCP-YCHG-----------------YELDQGKIGVIAASPMAIHHAL  158 (297)
T ss_dssp             EEEEEEEECCCCE-EECCCCB-TTGGGBTTTEESCH-HHHT-----------------GGGTTCEEEEECCSTTHHHHHH
T ss_pred             EEcCEEEECCCCC-CCCCCCC-CchhhcCCeeEEcc-cCcc-----------------hhhcCCEEEEEecCccHHHHHH
Confidence            4589999999984 8888899 54332  3444322 2111                 1223577999999999999999


Q ss_pred             HHHHcCCceEEEEEeecCCcCCCCHHHHHHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCceEEE
Q psy16200         87 SALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKL  166 (183)
Q Consensus        87 ~l~~~G~~~V~lv~r~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i  166 (183)
                      .|.+.|  +|++++++..   .......+.+.+.||+++. ..+.++..+ +   .+++             .+|+  ++
T Consensus       159 ~l~~~g--~v~~v~~~~~---~~~~~~~~~l~~~gv~i~~-~~v~~i~~~-~---~v~~-------------~~g~--~~  213 (297)
T 3fbs_A          159 MLPDWG--ETTFFTNGIV---EPDADQHALLAARGVRVET-TRIREIAGH-A---DVVL-------------ADGR--SI  213 (297)
T ss_dssp             HGGGTS--EEEEECTTTC---CCCHHHHHHHHHTTCEEEC-SCEEEEETT-E---EEEE-------------TTSC--EE
T ss_pred             HhhhcC--cEEEEECCCC---CCCHHHHHHHHHCCcEEEc-ceeeeeecC-C---eEEe-------------CCCC--EE
Confidence            999997  6999988653   2334444567889999985 788888743 2   2333             2333  68


Q ss_pred             ECCEEEEcccccccCC
Q psy16200        167 KANYIISAFGSTLLDN  182 (183)
Q Consensus       167 ~~D~Vi~a~G~~p~~~  182 (183)
                      ++|.||+|+|+.|+++
T Consensus       214 ~~D~vi~a~G~~p~~~  229 (297)
T 3fbs_A          214 ALAGLFTQPKLRITVD  229 (297)
T ss_dssp             EESEEEECCEEECCCS
T ss_pred             EEEEEEEccCcccCch
Confidence            9999999999999864

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=99.53  E-value=7.7e-14  Score=113.94  Aligned_cols=133  Identities=17%  Similarity=0.112  Sum_probs=85.3

Q ss_pred             CCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHHHH
Q psy16200         10 GYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSAL   89 (183)
Q Consensus        10 ~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~l~   89 (183)
                      .||+||+|||++ ++ |.+| +    ..+++..++...                 ....+++|+|||||.+|+|+|..|.
T Consensus       131 ~~d~vVlAtG~~-~~-p~ip-~----~~~~~~~~~~~~-----------------~~~~~~~vvVvG~G~~g~e~a~~l~  186 (369)
T 3d1c_A          131 HADYIFVATGDY-NF-PKKP-F----KYGIHYSEIEDF-----------------DNFNKGQYVVIGGNESGFDAAYQLA  186 (369)
T ss_dssp             EEEEEEECCCST-TS-BCCC-S----SSCEEGGGCSCG-----------------GGSCSSEEEEECCSHHHHHHHHHHH
T ss_pred             EeCEEEECCCCC-Cc-cCCC-C----CceechhhcCCh-----------------hhcCCCEEEEECCCcCHHHHHHHHH
Confidence            589999999985 54 5567 3    223443333210                 0113457999999999999999999


Q ss_pred             HcCCceEEEEEeecCCcCC-------CCH---HHHH-HHHHcC-cEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCee
Q psy16200         90 RCGANKVLVVFRKGCTNIR-------AVP---EEVQ-LAWEEK-CEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWV  157 (183)
Q Consensus        90 ~~G~~~V~lv~r~~~~~~~-------~~~---~~~~-~~~~~g-v~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~  157 (183)
                      +.|. +|++++|++....+       ...   +.+. .+.+.| |+++++..+.++..+++.+. +++            
T Consensus       187 ~~g~-~V~lv~~~~~~~~~~~d~~~~~~~~~~~~l~~~l~~~g~v~~~~~~~v~~i~~~~~~~~-v~~------------  252 (369)
T 3d1c_A          187 KNGS-DIALYTSTTGLNDPDADPSVRLSPYTRQRLGNVIKQGARIEMNVHYTVKDIDFNNGQYH-ISF------------  252 (369)
T ss_dssp             HTTC-EEEEECC----------CTTSCCHHHHHHHHHHHHTTCCEEEECSCCEEEEEEETTEEE-EEE------------
T ss_pred             hcCC-eEEEEecCCCCCCCCCCCCccCCHHHHHHHHHHHhhCCcEEEecCcEEEEEEecCCceE-EEe------------
Confidence            9986 79999998653211       111   1222 235565 99999999999864334332 333            


Q ss_pred             cCCCceEEEECCEEEEcccccccCC
Q psy16200        158 EDEEQRIKLKANYIISAFGSTLLDN  182 (183)
Q Consensus       158 ~~~g~~~~i~~D~Vi~a~G~~p~~~  182 (183)
                       .+|+ ....+|.||+|+|++|+++
T Consensus       253 -~~g~-~~~~~d~vi~a~G~~~~~~  275 (369)
T 3d1c_A          253 -DSGQ-SVHTPHEPILATGFDATKN  275 (369)
T ss_dssp             -SSSC-CEEESSCCEECCCBCGGGS
T ss_pred             -cCCe-EeccCCceEEeeccCCccc
Confidence             2343 2345799999999999873

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=99.53  E-value=9.8e-15  Score=123.22  Aligned_cols=125  Identities=17%  Similarity=0.145  Sum_probs=85.2

Q ss_pred             CCCCEEEEccCCC-CCcccCCCCCCccC----CC-ceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHH
Q psy16200          9 DGYTAIFIGIGKP-NANVIPIFQGLTEE----MG-FYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAF   82 (183)
Q Consensus         9 ~~~davviATGa~-~p~~l~i~gg~~~~----~~-V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~   82 (183)
                      ..||+||+|||+. .|+.|++| |+.++    ++ ++++.++...                 ....+++|+|||||++|+
T Consensus       164 ~~~d~VVvAtG~~s~p~~p~i~-G~~~~~~~~~g~v~~~~~~~~~-----------------~~~~~k~VvVvG~G~sg~  225 (447)
T 2gv8_A          164 DIFDAVSICNGHYEVPYIPNIK-GLDEYAKAVPGSVLHSSLFREP-----------------ELFVGESVLVVGGASSAN  225 (447)
T ss_dssp             EEESEEEECCCSSSSBCBCCCB-THHHHHHHSTTSEEEGGGCCCG-----------------GGGTTCCEEEECSSHHHH
T ss_pred             EEeCEEEECCCCCCCCCCCCCC-ChhhhhccCCccEEEecccCCh-----------------hhcCCCEEEEEccCcCHH
Confidence            4689999999984 47777888 53322    22 5554443211                 112356799999999999


Q ss_pred             HHHHHHHHcCCce-EEEEEeecCCcCCCCHHHHHHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCC
Q psy16200         83 DCATSALRCGANK-VLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEE  161 (183)
Q Consensus        83 e~A~~l~~~G~~~-V~lv~r~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g  161 (183)
                      |+|..|++.|. + |++++|++..           +...||.+  ...+.++..+++.   +++             .+|
T Consensus       226 e~A~~l~~~~~-~~V~l~~r~~~~-----------l~~~~i~~--~~~v~~~~~~~~~---v~~-------------~dG  275 (447)
T 2gv8_A          226 DLVRHLTPVAK-HPIYQSLLGGGD-----------IQNESLQQ--VPEITKFDPTTRE---IYL-------------KGG  275 (447)
T ss_dssp             HHHHHHTTTSC-SSEEEECTTCCS-----------CBCSSEEE--ECCEEEEETTTTE---EEE-------------TTT
T ss_pred             HHHHHHHHHhC-CcEEEEeCCCCc-----------CCCCCeEE--ecCeEEEecCCCE---EEE-------------CCC
Confidence            99999999986 6 9999987542           23446653  4566777543332   334             244


Q ss_pred             ceEEEECCEEEEcccccccCC
Q psy16200        162 QRIKLKANYIISAFGSTLLDN  182 (183)
Q Consensus       162 ~~~~i~~D~Vi~a~G~~p~~~  182 (183)
                      + ..+++|.||+|+|++||.+
T Consensus       276 ~-~~~~~D~vi~atG~~~~~~  295 (447)
T 2gv8_A          276 K-VLSNIDRVIYCTGYLYSVP  295 (447)
T ss_dssp             E-EECCCSEEEECCCBCCCCC
T ss_pred             C-EeccCCEEEECCCCCcCCC
Confidence            3 4579999999999999864

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=99.48  E-value=8.3e-14  Score=119.59  Aligned_cols=153  Identities=15%  Similarity=0.123  Sum_probs=93.0

Q ss_pred             CCCCEEEEccCCCCCcccCCCCCCccC----CCceehhhhHHHHhccc-cCCccCCCCCCCC-CCCcceEEEEcCChhHH
Q psy16200          9 DGYTAIFIGIGKPNANVIPIFQGLTEE----MGFYTSKTFLPRVATSS-KKGLCGGCKKESL-PILKGTVIVLGAGDTAF   82 (183)
Q Consensus         9 ~~~davviATGa~~p~~l~i~gg~~~~----~~V~~~~~~l~~~~~~~-~~~~~~~~~~~~~-~~~~~~VvViGgG~~g~   82 (183)
                      ..||.+|||||+ .|+.+++| |+.+.    ..+-.+..+........ +..+.  ... .. .....+++|||||++|+
T Consensus       156 i~YD~LViAtGs-~~~~~~ip-G~~e~a~~l~t~~dA~~ir~~l~~~~e~a~~~--~~~-~~~~~~~~~vvVvGgG~tGv  230 (502)
T 4g6h_A          156 IKYDYLISAVGA-EPNTFGIP-GVTDYGHFLKEIPNSLEIRRTFAANLEKANLL--PKG-DPERRRLLSIVVVGGGPTGV  230 (502)
T ss_dssp             EECSEEEECCCC-EECCTTCT-THHHHCEECSSHHHHHHHHHHHHHHHHHHHHS--CTT-CHHHHHHTEEEEECCSHHHH
T ss_pred             EeCCEEEEcCCc-ccccCCcc-CcccccCCCCCHHHHHHHHHHHHHHHHHHhcc--ccc-chhhccccceEEECCCcchh
Confidence            469999999999 48889999 54321    11111222111110000 00000  000 00 00123699999999999


Q ss_pred             HHHHHHHHcC--------------CceEEEEEeecCCcCCCCHHHH-----HHHHHcCcEEEeCCcceEEEccCCcEEEE
Q psy16200         83 DCATSALRCG--------------ANKVLVVFRKGCTNIRAVPEEV-----QLAWEEKCEFLPFMSPVQVDVKDNKIAGM  143 (183)
Q Consensus        83 e~A~~l~~~G--------------~~~V~lv~r~~~~~~~~~~~~~-----~~~~~~gv~~~~~~~~~~i~~~~~~v~~v  143 (183)
                      |+|..|++++              . +|+++++.++. ++..++++     +.+++.||++++++.+.++..  +.+. +
T Consensus       231 E~A~~l~~~~~~~l~~~~~~~~~~~-~V~lve~~~~i-l~~~~~~~~~~~~~~L~~~GV~v~~~~~v~~v~~--~~~~-~  305 (502)
T 4g6h_A          231 EAAGELQDYVHQDLRKFLPALAEEV-QIHLVEALPIV-LNMFEKKLSSYAQSHLENTSIKVHLRTAVAKVEE--KQLL-A  305 (502)
T ss_dssp             HHHHHHHHHHHHTHHHHCHHHHHHC-EEEEECSSSSS-STTSCHHHHHHHHHHHHHTTCEEETTEEEEEECS--SEEE-E
T ss_pred             hhHHHHHHHHHHHHHhhcccccccc-eeEEecccccc-ccCCCHHHHHHHHHHHHhcceeeecCceEEEEeC--CceE-E
Confidence            9999887543              3 69999998764 66654443     345788999999999998863  3332 1


Q ss_pred             EEEEeeecCCCCeecCCCceEEEECCEEEEccccccc
Q psy16200        144 QFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLL  180 (183)
Q Consensus       144 ~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~  180 (183)
                      ...    ..++     ..+.+++++|+||+|+|.+||
T Consensus       306 ~~~----~~dg-----~~~~~~i~ad~viwa~Gv~~~  333 (502)
T 4g6h_A          306 KTK----HEDG-----KITEETIPYGTLIWATGNKAR  333 (502)
T ss_dssp             EEE----CTTS-----CEEEEEEECSEEEECCCEECC
T ss_pred             EEE----ecCc-----ccceeeeccCEEEEccCCcCC
Confidence            111    1111     113468999999999999987

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=99.47  E-value=4.7e-13  Score=115.88  Aligned_cols=77  Identities=18%  Similarity=0.128  Sum_probs=57.0

Q ss_pred             CCCEEEEccCC-CCCcccCCCCCCccCCC-ceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHH
Q psy16200         10 GYTAIFIGIGK-PNANVIPIFQGLTEEMG-FYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATS   87 (183)
Q Consensus        10 ~~davviATGa-~~p~~l~i~gg~~~~~~-V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~   87 (183)
                      .||.||+|||+ ..|+.|++| |+.++.+ +++...+..                 .....+++|+|||+|.+|+|+|..
T Consensus       135 ~ad~lV~AtG~~s~p~~p~ip-G~~~f~g~~~~~~~~~~-----------------~~~~~~krV~VIG~G~sgve~a~~  196 (540)
T 3gwf_A          135 RAKYVVNAVGLLSAINFPNLP-GLDTFEGETIHTAAWPE-----------------GKSLAGRRVGVIGTGSTGQQVITS  196 (540)
T ss_dssp             EEEEEEECCCSCCSBCCCCCT-TGGGCCSEEEEGGGCCS-----------------SCCCTTSEEEEECCSHHHHHHHHH
T ss_pred             EeCEEEECCcccccCCCCCCC-CccccCCCEEEeecCCC-----------------ccccccceEEEECCCchHHHHHHH
Confidence            58999999995 258888899 6555554 233332211                 122345789999999999999999


Q ss_pred             HHHcCCceEEEEEeecCC
Q psy16200         88 ALRCGANKVLVVFRKGCT  105 (183)
Q Consensus        88 l~~~G~~~V~lv~r~~~~  105 (183)
                      |++.+. +|++++|++..
T Consensus       197 l~~~~~-~Vtv~~r~~~~  213 (540)
T 3gwf_A          197 LAPEVE-HLTVFVRTPQY  213 (540)
T ss_dssp             HTTTCS-EEEEEESSCCC
T ss_pred             HHhhCC-EEEEEECCCCc
Confidence            999985 79999998763

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=99.46  E-value=2.3e-13  Score=109.05  Aligned_cols=133  Identities=5%  Similarity=0.034  Sum_probs=87.9

Q ss_pred             CCCCEEEEccCCCCCcccCCCCCCccC--CCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCCh-hHHHHH
Q psy16200          9 DGYTAIFIGIGKPNANVIPIFQGLTEE--MGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGD-TAFDCA   85 (183)
Q Consensus         9 ~~~davviATGa~~p~~l~i~gg~~~~--~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~-~g~e~A   85 (183)
                      ..||+||||||+ .|+.|++| |....  .++++.... .                 .....+++++|||||. .++++|
T Consensus       104 ~~a~~liiATGs-~p~~p~i~-G~~~~~~~~v~~~~~~-~-----------------~~~~~~~~~~VIggG~~~~~e~a  163 (304)
T 4fk1_A          104 YLAERVLLATGM-QEEFPSIP-NVREYYGKSLFSCPYC-D-----------------GWELKDQPLIIISENEDHTLHMT  163 (304)
T ss_dssp             EEEEEEEECCCC-EEECCSCT-THHHHBTTTEESCHHH-H-----------------SGGGTTSCEEEECCSHHHHHHHH
T ss_pred             EEeCEEEEccCC-cccccccc-Cccccccceeeecccc-c-----------------hhHhcCCceeeecCCCchhhhHH
Confidence            357999999999 59999999 53322  244432211 1                 1122345688887775 567888


Q ss_pred             HHHHHcCCceEEEEEeecCCcCCCCHHHHHHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCceEE
Q psy16200         86 TSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIK  165 (183)
Q Consensus        86 ~~l~~~G~~~V~lv~r~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~  165 (183)
                      ..+.+.+. +|+++.+...    ......+.+.++|+.++++ .+..+..++++++.+++             .+|  ++
T Consensus       164 ~~~~~~~~-~v~i~~~~~~----~~~~~~~~l~~~g~~~~~~-~v~~~~~~~~~~~~v~~-------------~~g--~~  222 (304)
T 4fk1_A          164 KLVYNWST-DLVIATNGNE----LSQTIMDELSNKNIPVITE-SIRTLQGEGGYLKKVEF-------------HSG--LR  222 (304)
T ss_dssp             HHHTTTCS-CEEEECSSCC----CCHHHHHHHHTTTCCEECS-CEEEEESGGGCCCEEEE-------------TTS--CE
T ss_pred             HHHHhCCc-eEEEEecccc----chhhhhhhhhccceeEeee-eEEEeecCCCeeeeeec-------------ccc--ce
Confidence            88888875 7999876532    2344556678889999876 46667666666665554             233  36


Q ss_pred             EECCEEEEcccccccCC
Q psy16200        166 LKANYIISAFGSTLLDN  182 (183)
Q Consensus       166 i~~D~Vi~a~G~~p~~~  182 (183)
                      +++|.+|++.|..|+++
T Consensus       223 i~~~~~vi~~g~~~~~~  239 (304)
T 4fk1_A          223 IERAGGFIVPTFFRPNQ  239 (304)
T ss_dssp             ECCCEEEECCEEECSSC
T ss_pred             eeecceeeeeccccCCh
Confidence            88998888888777653

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=99.40  E-value=1.2e-12  Score=105.80  Aligned_cols=80  Identities=14%  Similarity=0.102  Sum_probs=54.2

Q ss_pred             CCCCEEEEccCCC-CCcccCCCCCCccCCC-ceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHH
Q psy16200          9 DGYTAIFIGIGKP-NANVIPIFQGLTEEMG-FYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCAT   86 (183)
Q Consensus         9 ~~~davviATGa~-~p~~l~i~gg~~~~~~-V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~   86 (183)
                      ..||.||+|||++ .|+.|++| |+....+ ++...++..                 .....+++|+|||+|.+|+|+|.
T Consensus       119 ~~~d~vV~AtG~~~~~~~~~~~-g~~~~~~~~~~~~~~~~-----------------~~~~~~~~v~VvG~G~~g~e~a~  180 (357)
T 4a9w_A          119 WLARAVISATGTWGEAYTPEYQ-GLESFAGIQLHSAHYST-----------------PAPFAGMRVAIIGGGNSGAQILA  180 (357)
T ss_dssp             EEEEEEEECCCSGGGBCCCCCT-TGGGCCSEEEEGGGCCC-----------------SGGGTTSEEEEECCSHHHHHHHH
T ss_pred             EEeCEEEECCCCCCCCCCCCCC-CccccCCcEEEeccCCC-----------------hhhcCCCEEEEECCCcCHHHHHH
Confidence            3589999999963 45667888 5444333 222222211                 11223467999999999999999


Q ss_pred             HHHHcCCceEEEEEeecCCcCC
Q psy16200         87 SALRCGANKVLVVFRKGCTNIR  108 (183)
Q Consensus        87 ~l~~~G~~~V~lv~r~~~~~~~  108 (183)
                      .|++.|  +|++++|+....++
T Consensus       181 ~l~~~~--~v~~v~~~~~~~~~  200 (357)
T 4a9w_A          181 EVSTVA--ETTWITQHEPAFLA  200 (357)
T ss_dssp             HHTTTS--EEEEECSSCCCBCC
T ss_pred             HHHhhC--CEEEEECCCCeecc
Confidence            999996  49999987543344

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=99.39  E-value=3.4e-12  Score=110.62  Aligned_cols=83  Identities=17%  Similarity=0.167  Sum_probs=54.4

Q ss_pred             CCCEEEEccC--CCCCcccCCCCCCccCCC-ceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHH
Q psy16200         10 GYTAIFIGIG--KPNANVIPIFQGLTEEMG-FYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCAT   86 (183)
Q Consensus        10 ~~davviATG--a~~p~~l~i~gg~~~~~~-V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~   86 (183)
                      .||.||+|||  + .|+.|++| |+.++.+ ++....+......        ...  .....+++|+|||+|.+|+|+|.
T Consensus       135 ~ad~lV~AtG~~s-~p~~p~ip-G~~~f~g~~~h~~~~~~~~~~--------~~~--~~~~~~krV~VIG~G~tgve~a~  202 (545)
T 3uox_A          135 TCRFLISATGPLS-ASRMPDIK-GIDSFKGESFHSSRWPTDAEG--------APK--GVDFTGKRVGVIGTGATGVQIIP  202 (545)
T ss_dssp             EEEEEEECCCSCB-C---CCCT-TGGGCCSEEEEGGGCCBCTTS--------CBS--CCCCBTCEEEEECCSHHHHHHHH
T ss_pred             EeCEEEECcCCCC-CCcCCCCC-CccccCCCeEEcccccccccc--------ccc--ccccCCCeEEEECCCccHHHHHH
Confidence            5899999999  5 58888999 6555554 3333322110000        000  01234577999999999999999


Q ss_pred             HHHHcCCceEEEEEeecCC
Q psy16200         87 SALRCGANKVLVVFRKGCT  105 (183)
Q Consensus        87 ~l~~~G~~~V~lv~r~~~~  105 (183)
                      .|++.+. +|++++|++..
T Consensus       203 ~la~~~~-~Vtv~~r~~~~  220 (545)
T 3uox_A          203 IAAETAK-ELYVFQRTPNW  220 (545)
T ss_dssp             HHTTTBS-EEEEEESSCCC
T ss_pred             HHHhhCC-EEEEEEcCCCc
Confidence            9999975 89999998764

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=99.36  E-value=3.3e-12  Score=110.80  Aligned_cols=80  Identities=18%  Similarity=0.226  Sum_probs=58.2

Q ss_pred             CCCEEEEccC--CCCCcccCCCCCCccCCC-ceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHH
Q psy16200         10 GYTAIFIGIG--KPNANVIPIFQGLTEEMG-FYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCAT   86 (183)
Q Consensus        10 ~~davviATG--a~~p~~l~i~gg~~~~~~-V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~   86 (183)
                      .||.||+|||  + .|+.|++| |+.++.+ +++...+...                .....+++|+|||+|.+|+|+|.
T Consensus       147 ~ad~lV~AtG~~s-~p~~p~ip-G~~~f~g~~~~~~~~~~~----------------~~~~~~krV~VIG~G~sgve~a~  208 (549)
T 4ap3_A          147 SARFLVVAAGPLS-NANTPAFD-GLDRFTGDIVHTARWPHD----------------GVDFTGKRVGVIGTGSSGIQSIP  208 (549)
T ss_dssp             EEEEEEECCCSEE-ECCCCCCT-TGGGCCSEEEEGGGCCTT----------------CCCCBTCEEEEECCSHHHHHHHH
T ss_pred             EeCEEEECcCCCC-CCCCCCCC-CcccCCCceEEecccccc----------------ccccCCCEEEEECCCchHHHHHH
Confidence            5899999999  5 58888999 6555555 3333332200                11234577999999999999999


Q ss_pred             HHHHcCCceEEEEEeecCCcCC
Q psy16200         87 SALRCGANKVLVVFRKGCTNIR  108 (183)
Q Consensus        87 ~l~~~G~~~V~lv~r~~~~~~~  108 (183)
                      .|++.+. +|++++|++...+|
T Consensus       209 ~l~~~~~-~Vtv~~r~~~~ilp  229 (549)
T 4ap3_A          209 IIAEQAE-QLFVFQRSANYSIP  229 (549)
T ss_dssp             HHHHHBS-EEEEEESSCCCEEE
T ss_pred             HHHhhCC-EEEEEECCCCcccc
Confidence            9999985 79999998764333

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=99.35  E-value=2.7e-12  Score=109.83  Aligned_cols=111  Identities=12%  Similarity=0.002  Sum_probs=83.7

Q ss_pred             hCCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHH
Q psy16200          8 KDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATS   87 (183)
Q Consensus         8 ~~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~   87 (183)
                      ...||++|+|||+. |+.+++| | .+.++|++..+++...+..             ....+++++|+|+|++|+|    
T Consensus       205 ~~~~d~lvlAtGa~-~~~~~~~-g-~~~~gv~~~~~~~~~~~~~-------------~~~~~~~vvViGgG~~gle----  264 (493)
T 1y56_A          205 EILAKRVVLATGAI-DSTMLFE-N-NDMPGVFRRDFALEVMNVW-------------EVAPGRKVAVTGSKADEVI----  264 (493)
T ss_dssp             EEEESCEEECCCEE-ECCCCCT-T-TTSTTEEEHHHHHHHHHTS-------------CBCSCSEEEEESTTHHHHH----
T ss_pred             EEECCEEEECCCCC-ccCCCCC-C-CCCCCEEEcHHHHHHHHhc-------------ccCCCCEEEEECCCHHHHH----
Confidence            45699999999994 8888999 5 6788999887766543221             1223477999999999988    


Q ss_pred             HHHcCCceEEEEEeecCCcCCCCHHHHHHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCceEEEE
Q psy16200         88 ALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLK  167 (183)
Q Consensus        88 l~~~G~~~V~lv~r~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~  167 (183)
                                                 ..+.+.||+|+++..+.++..+ +++..+++             .+|  .+++
T Consensus       265 ---------------------------~~l~~~GV~v~~~~~v~~i~~~-~~v~~v~~-------------~~g--~~i~  301 (493)
T 1y56_A          265 ---------------------------QELERWGIDYVHIPNVKRVEGN-EKVERVID-------------MNN--HEYK  301 (493)
T ss_dssp             ---------------------------HHHHHHTCEEEECSSEEEEECS-SSCCEEEE-------------TTC--CEEE
T ss_pred             ---------------------------HHHHhCCcEEEeCCeeEEEecC-CceEEEEe-------------CCC--eEEE
Confidence                                       3456789999999999999853 34443432             223  3789


Q ss_pred             CCEEEEcccccccC
Q psy16200        168 ANYIISAFGSTLLD  181 (183)
Q Consensus       168 ~D~Vi~a~G~~p~~  181 (183)
                      ||.||+|+|+.||+
T Consensus       302 aD~Vv~a~G~~p~~  315 (493)
T 1y56_A          302 VDALIFADGRRPDI  315 (493)
T ss_dssp             CSEEEECCCEEECC
T ss_pred             eCEEEECCCcCcCc
Confidence            99999999999986

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=99.29  E-value=7.2e-12  Score=105.40  Aligned_cols=147  Identities=16%  Similarity=0.127  Sum_probs=88.6

Q ss_pred             CCCCEEEEccCCCCCcccCCCCCCccC-C---CceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChh----
Q psy16200          9 DGYTAIFIGIGKPNANVIPIFQGLTEE-M---GFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDT----   80 (183)
Q Consensus         9 ~~~davviATGa~~p~~l~i~gg~~~~-~---~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~----   80 (183)
                      ..||++|||||+ .|+.+++| |+.+. .   .+++..+.+...+...           . ...+++++|||+|..    
T Consensus        99 i~~d~lviAtG~-~~~~~~ip-G~~~~~~~~~~~~~~~~a~~~~~~~~-----------~-~~~~~~~vVVGgG~~~g~~  164 (437)
T 3sx6_A           99 VHYDYLMIATGP-KLAFENVP-GSDPHEGPVQSICTVDHAERAFAEYQ-----------A-LLREPGPIVIGAMAGASCF  164 (437)
T ss_dssp             EECSEEEECCCC-EECGGGST-TCSTTTSSEECCSSHHHHHHHHHHHH-----------H-HHHSCCCEEEEECTTCCCC
T ss_pred             EECCEEEECCCC-CcCcccCC-CCCcccCcceecccccHHHHHHHHHH-----------H-HHhCCCEEEEEcCCCCCcC
Confidence            469999999998 58888899 54322 1   2344333333221100           0 001245788998554    


Q ss_pred             H--HHHH----HHHHHcCCc---e-EEEEEeecCCc---C---CCCHHHH-HHHHHcCcEEEeCCcceEEEccCCcEEEE
Q psy16200         81 A--FDCA----TSALRCGAN---K-VLVVFRKGCTN---I---RAVPEEV-QLAWEEKCEFLPFMSPVQVDVKDNKIAGM  143 (183)
Q Consensus        81 g--~e~A----~~l~~~G~~---~-V~lv~r~~~~~---~---~~~~~~~-~~~~~~gv~~~~~~~~~~i~~~~~~v~~v  143 (183)
                      |  +|+|    ..+.+.|.+   + |+++++++...   +   +.....+ +.+.+.||++++++.+.++..  +.+   
T Consensus       165 G~~~E~a~~la~~l~~~g~~~~~~~Vtlv~~~~~~~~~~l~~~~~~~~~~~~~l~~~gI~~~~~~~v~~v~~--~~v---  239 (437)
T 3sx6_A          165 GPAYEYAMIVASDLKKRGMRDKIPSFTFITSEPYIGHLGIQGVGDSKGILTKGLKEEGIEAYTNCKVTKVED--NKM---  239 (437)
T ss_dssp             HHHHHHHHHHHHHHHHTTCGGGCSCEEEEESSSSTTCTTTTCCTTHHHHHHHHHHHTTCEEECSEEEEEEET--TEE---
T ss_pred             cHHHHHHHHHHHHHHHcCCcccCcEEEEEcCCccccccccCcchHHHHHHHHHHHHCCCEEEcCCEEEEEEC--CeE---
Confidence            4  7766    666777763   2 99999876420   1   1112223 345778999999999999974  333   


Q ss_pred             EEEEeeecCCCCeecCCCceEEEECCEEEEccccccc
Q psy16200        144 QFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLL  180 (183)
Q Consensus       144 ~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~  180 (183)
                      .+...  +.++.    .++..++++|.|++++|+.|+
T Consensus       240 ~~~~~--~~~g~----~~~~~~i~~D~vv~~~g~~~~  270 (437)
T 3sx6_A          240 YVTQV--DEKGE----TIKEMVLPVKFGMMIPAFKGV  270 (437)
T ss_dssp             EEEEE--CTTSC----EEEEEEEECSEEEEECCEECC
T ss_pred             EEEec--ccCCc----cccceEEEEeEEEEcCCCcCc
Confidence            23221  11111    112568999999999998875

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=99.21  E-value=4e-11  Score=99.75  Aligned_cols=134  Identities=13%  Similarity=0.132  Sum_probs=85.2

Q ss_pred             CCCCEEEEccCCCCCcccCCCCCCccC-CCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCCh--------
Q psy16200          9 DGYTAIFIGIGKPNANVIPIFQGLTEE-MGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGD--------   79 (183)
Q Consensus         9 ~~~davviATGa~~p~~l~i~gg~~~~-~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~--------   79 (183)
                      ..||+||+|||+ .|+.+++| |+.+. ..+++..+.......              ...+.++++|||+|.        
T Consensus       100 ~~~d~lViAtG~-~~~~~~ip-G~~~~~~~~~~~~~~~~~~~~--------------l~~~~~~~vViG~G~f~~~~~~~  163 (409)
T 3h8l_A          100 EEYDYVIVGIGA-HLATELVK-GWDKYGYSVCEPEFATKLREK--------------LESFQGGNIAIGSGPFYQGHNPK  163 (409)
T ss_dssp             EECSEEEECCCC-EECGGGSB-THHHHCEESSSTTHHHHHHHH--------------HHHCCSEEEEEEECCBCCCCSSC
T ss_pred             eeCCEEEECCCC-CcCccCCC-ChhhcCcCcCCHHHHHHHHHH--------------HHHhcCCeEEEEecccccCCCcc
Confidence            469999999998 58888899 53321 123332222221110              012235677999991        


Q ss_pred             -----------------hHHHHH----HHHHHcCC---ceEEEEEeecCCcCCCCHHH-----HHHHHHcCcEEEeCCcc
Q psy16200         80 -----------------TAFDCA----TSALRCGA---NKVLVVFRKGCTNIRAVPEE-----VQLAWEEKCEFLPFMSP  130 (183)
Q Consensus        80 -----------------~g~e~A----~~l~~~G~---~~V~lv~r~~~~~~~~~~~~-----~~~~~~~gv~~~~~~~~  130 (183)
                                       .++|+|    ..+.+.|.   .+|+++++.+  .++..+..     .+.+.+.||++++++.+
T Consensus       164 ~~~p~~~~p~~~~~~~~~~~e~a~~~~~~l~~~g~~~~~~v~~~~~~~--~l~~~~~~~~~~~~~~l~~~gV~~~~~~~v  241 (409)
T 3h8l_A          164 PKVPENFVPNADSACEGPVFEMSLMLHGYFKKKGMLDKVHVTVFSPGE--YLSDLSPNSRKAVASIYNQLGIKLVHNFKI  241 (409)
T ss_dssp             CBSCTTSSCCCSCSSCHHHHHHHHHHHHHHHTTTCTTTEEEEEECSSS--SSTTBCHHHHHHHHHHHHHHTCEEECSCCE
T ss_pred             ccccccccCCCCcccCCHHHHHHHHHHHHHHHcCCCCCeEEEEEeCCc--cccccCHHHHHHHHHHHHHCCCEEEcCCce
Confidence                             356666    55667773   2699999875  24443322     23456789999999999


Q ss_pred             eEEEccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEccccccc
Q psy16200        131 VQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLL  180 (183)
Q Consensus       131 ~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~  180 (183)
                      .++..  +.   +++             .+|+  ++++|.||+++|+.|+
T Consensus       242 ~~i~~--~~---v~~-------------~~g~--~~~~D~vi~a~G~~~~  271 (409)
T 3h8l_A          242 KEIRE--HE---IVD-------------EKGN--TIPADITILLPPYTGN  271 (409)
T ss_dssp             EEECS--SE---EEE-------------TTSC--EEECSEEEEECCEECC
T ss_pred             EEECC--Ce---EEE-------------CCCC--EEeeeEEEECCCCCcc
Confidence            99864  22   333             2333  6899999999999986

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=99.20  E-value=1.6e-10  Score=85.46  Aligned_cols=91  Identities=23%  Similarity=0.172  Sum_probs=66.8

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCCcC--------CCC-----HHHH-----HHHHHcCcEEEeCCcceE
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNI--------RAV-----PEEV-----QLAWEEKCEFLPFMSPVQ  132 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~~~--------~~~-----~~~~-----~~~~~~gv~~~~~~~~~~  132 (183)
                      +|+|||||.+|+++|..|++.|. +|+++++++....        +..     ..++     +.+.+.|++++++ .+.+
T Consensus         3 ~vvIIGgG~~Gl~~A~~l~~~g~-~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~v~~~-~v~~   80 (180)
T 2ywl_A            3 DVIVVGGGPSGLSAALFLARAGL-KVLVLDGGRSKVKGVSRVPNYPGLLDEPSGEELLRRLEAHARRYGAEVRPG-VVKG   80 (180)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-CEEEEECSCCTTTTCSCCCCSTTCTTCCCHHHHHHHHHHHHHHTTCEEEEC-CCCE
T ss_pred             eEEEECCCHHHHHHHHHHHHCCC-cEEEEeCCCCcccCchhhhccCCCcCCCCHHHHHHHHHHHHHHcCCEEEeC-EEEE
Confidence            59999999999999999999997 6999998764211        111     2222     2346789999999 9988


Q ss_pred             EEccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEccccccc
Q psy16200        133 VDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLL  180 (183)
Q Consensus       133 i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~  180 (183)
                      +..+++.+. +++             .+|   ++++|.||+|+|..|+
T Consensus        81 i~~~~~~~~-v~~-------------~~g---~i~ad~vI~A~G~~~~  111 (180)
T 2ywl_A           81 VRDMGGVFE-VET-------------EEG---VEKAERLLLCTHKDPT  111 (180)
T ss_dssp             EEECSSSEE-EEC-------------SSC---EEEEEEEEECCTTCCH
T ss_pred             EEEcCCEEE-EEE-------------CCC---EEEECEEEECCCCCCC
Confidence            875444432 222             223   6899999999999985

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=99.14  E-value=3.6e-10  Score=96.89  Aligned_cols=80  Identities=14%  Similarity=0.184  Sum_probs=56.6

Q ss_pred             CCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHHHH
Q psy16200         10 GYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSAL   89 (183)
Q Consensus        10 ~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~l~   89 (183)
                      .++.||+|||. .|..|..++   ....++++.+|........           .....+|||+|||+|.+|+|++..|+
T Consensus       202 ~ar~vVlatG~-~P~iP~~~~---~~g~v~Hss~y~~~~~~~~-----------~~~~~gKrV~VVG~G~SA~ei~~~L~  266 (501)
T 4b63_A          202 RTRKVVIAIGG-TAKMPSGLP---QDPRIIHSSKYCTTLPALL-----------KDKSKPYNIAVLGSGQSAAEIFHDLQ  266 (501)
T ss_dssp             EEEEEEECCCC-EECCCTTSC---CCTTEEEGGGHHHHHHHHS-----------CCTTSCCEEEEECCSHHHHHHHHHHH
T ss_pred             EeCEEEECcCC-CCCCCCCCC---CCcceeeccccccchhhcc-----------ccccCCcEEEEECCcHHHHHHHHHHH
Confidence            46889999997 476555542   2245888888877543210           01234577999999999999999988


Q ss_pred             Hc-CCceEEEEEeecC
Q psy16200         90 RC-GANKVLVVFRKGC  104 (183)
Q Consensus        90 ~~-G~~~V~lv~r~~~  104 (183)
                      +. ...+|+++.|++.
T Consensus       267 ~~~~~~~v~~~~R~~~  282 (501)
T 4b63_A          267 KRYPNSRTTLIMRDSA  282 (501)
T ss_dssp             HHSTTCEEEEECSSSS
T ss_pred             hcCCCceEEEEeCCCc
Confidence            75 2347999999764

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=99.08  E-value=8.6e-10  Score=95.25  Aligned_cols=78  Identities=15%  Similarity=0.237  Sum_probs=56.0

Q ss_pred             CCCEEEEccCCC-CCcccCCCCCCccCCC-ceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHH
Q psy16200         10 GYTAIFIGIGKP-NANVIPIFQGLTEEMG-FYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATS   87 (183)
Q Consensus        10 ~~davviATGa~-~p~~l~i~gg~~~~~~-V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~   87 (183)
                      .+|.||+|||.. .|+.|++| |+..++| ++.+..+..   .             .....+++|+|||+|.+|+|+|..
T Consensus       142 ~ad~vV~AtG~~s~p~~p~i~-G~~~f~G~~~hs~~~~~---~-------------~~~~~gk~V~VIG~G~sg~e~a~~  204 (542)
T 1w4x_A          142 RARYLIMASGQLSVPQLPNFP-GLKDFAGNLYHTGNWPH---E-------------PVDFSGQRVGVIGTGSSGIQVSPQ  204 (542)
T ss_dssp             EEEEEEECCCSCCCCCCCCCT-TGGGCCSEEEEGGGCCS---S-------------CCCCBTCEEEEECCSHHHHHHHHH
T ss_pred             EeCEEEECcCCCCCCCCCCCC-CcccCCCceEECCCCCC---c-------------hhccCCCEEEEECCCccHHHHHHH
Confidence            589999999963 57778899 6555566 232222210   0             112345779999999999999999


Q ss_pred             HHHcCCceEEEEEeecCC
Q psy16200         88 ALRCGANKVLVVFRKGCT  105 (183)
Q Consensus        88 l~~~G~~~V~lv~r~~~~  105 (183)
                      +++.+. +|+++.|++..
T Consensus       205 l~~~~~-~vtv~~r~~~~  221 (542)
T 1w4x_A          205 IAKQAA-ELFVFQRTPHF  221 (542)
T ss_dssp             HHHHBS-EEEEEESSCCC
T ss_pred             HhhcCc-eEEEEEcCCcc
Confidence            999985 79999987643

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=98.95  E-value=1e-10  Score=100.12  Aligned_cols=152  Identities=13%  Similarity=0.098  Sum_probs=90.6

Q ss_pred             CCEEEEccCCCCCcccCCCCCCccCCCceehh---hhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHH
Q psy16200         11 YTAIFIGIGKPNANVIPIFQGLTEEMGFYTSK---TFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATS   87 (183)
Q Consensus        11 ~davviATGa~~p~~l~i~gg~~~~~~V~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~   87 (183)
                      ||.++++||+. |+.++++ + .+.++++...   +.........+.    .+..........+|+|||||..|+.+|..
T Consensus        38 ~~~l~~~~g~~-~~~~~i~-~-~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~dVvIVGgG~aGl~aA~~  110 (497)
T 2bry_A           38 FQGLCRALGVE-SGGGLSQ-Y-HKIKAQLNYWSAKSLWAKLDKRASQ----PVYQQGQACTNTKCLVVGAGPCGLRAAVE  110 (497)
T ss_dssp             HHHHHHHHTCC-TTCHHHH-H-HHHHHTCCSTTTHHHHHHHHHHHTS----GGGGGGTTTTTCEEEEECCSHHHHHHHHH
T ss_pred             HHHHHHHhCCC-CCCCcEe-e-hhhHHHHHHHHHHHhhhhhhhhhcc----ccccCccccCCCCEEEECccHHHHHHHHH
Confidence            67788999985 8877777 3 4444444332   222220000000    00000012233569999999999999999


Q ss_pred             HHHcCCceEEEEEeecCCc----CCCCH----------------------------HHH-----HHHHHcCcEEEeCCcc
Q psy16200         88 ALRCGANKVLVVFRKGCTN----IRAVP----------------------------EEV-----QLAWEEKCEFLPFMSP  130 (183)
Q Consensus        88 l~~~G~~~V~lv~r~~~~~----~~~~~----------------------------~~~-----~~~~~~gv~~~~~~~~  130 (183)
                      |++.|. +|+|+++++...    ....+                            .++     +.+.+.|+++++++.+
T Consensus       111 La~~G~-~V~liEk~~~~g~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~gv~v~~~~~v  189 (497)
T 2bry_A          111 LALLGA-RVVLVEKRIKFSRHNVLHLWPFTIHDLRALGAKKFYGRFCTGTLDHISIRQLQLLLLKVALLLGVEIHWGVKF  189 (497)
T ss_dssp             HHHTTC-EEEEEESCSSCCCCCEEECCHHHHHHHHTTTHHHHCTTTTCTTCCEEEHHHHHHHHHHHHHHTTCEEEESCEE
T ss_pred             HHHCCC-eEEEEEeccccCCCCcccCChhHHHHHHHcCCccccccccccccccCCHHHHHHHHHHHHHhCCCEEEeCCEE
Confidence            999997 799999875320    00000                            111     2345579999999999


Q ss_pred             eEEEcc--CCcEEEEEEEEeeecCCCCeecC-CCceEEEECCEEEEcccccccC
Q psy16200        131 VQVDVK--DNKIAGMQFNRTEQNEKGEWVED-EEQRIKLKANYIISAFGSTLLD  181 (183)
Q Consensus       131 ~~i~~~--~~~v~~v~~~~~~~~~~~~~~~~-~g~~~~i~~D~Vi~a~G~~p~~  181 (183)
                      .++..+  ++....+++..           . +|+..++.+|.||+|.|..+..
T Consensus       190 ~~i~~~~~~~~~~~v~~~~-----------~~~g~~~~i~ad~VV~A~G~~S~~  232 (497)
T 2bry_A          190 TGLQPPPRKGSGWRAQLQP-----------NPPAQLASYEFDVLISAAGGKFVP  232 (497)
T ss_dssp             EEEECCCSTTCCBEEEEES-----------CCCHHHHTCCBSEEEECCCTTCCC
T ss_pred             EEEEEecCCCCEEEEEEEE-----------CCCCCEEEEEcCEEEECCCCCccc
Confidence            998752  12222244320           1 3333468999999999998754

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=98.88  E-value=1.1e-08  Score=78.88  Aligned_cols=93  Identities=16%  Similarity=0.126  Sum_probs=64.4

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCCc-C---C-------------------CCHHHH-----HHHHHc-C
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTN-I---R-------------------AVPEEV-----QLAWEE-K  121 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~~-~---~-------------------~~~~~~-----~~~~~~-g  121 (183)
                      +|+|||||..|+++|..|+++|. +|++++++.... +   +                   .....+     +.+.+. |
T Consensus         5 dVvVVGgG~aGl~aA~~la~~g~-~v~lie~~~~~~G~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~l~~~~~~~~g   83 (232)
T 2cul_A            5 QVLIVGAGFSGAETAFWLAQKGV-RVGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPKDERVWAFHARAKYLLEGLRP   83 (232)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTC-CEEEEESCGGGTTCCSSCCCSCCCTTCHHHHHCCTTCCCHHHHHHHHHHHHHTCTT
T ss_pred             CEEEECcCHHHHHHHHHHHHCCC-CEEEEecCCCcCCcccCccccccchhhHHhhhccCCCCCHHHHHHHHHHHHHcCCC
Confidence            49999999999999999999997 699999862100 0   0                   011121     234454 8


Q ss_pred             cEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEccccccc
Q psy16200        122 CEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLL  180 (183)
Q Consensus       122 v~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~  180 (183)
                      ++++ +..+.++..+++++.++++             .+|+  ++++|.||+|+|..++
T Consensus        84 v~i~-~~~v~~i~~~~~~v~~v~~-------------~~g~--~i~a~~VV~A~G~~s~  126 (232)
T 2cul_A           84 LHLF-QATATGLLLEGNRVVGVRT-------------WEGP--PARGEKVVLAVGSFLG  126 (232)
T ss_dssp             EEEE-ECCEEEEEEETTEEEEEEE-------------TTSC--CEECSEEEECCTTCSS
T ss_pred             cEEE-EeEEEEEEEeCCEEEEEEE-------------CCCC--EEECCEEEECCCCChh
Confidence            9988 4688888765566654543             2333  6899999999999554

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=98.82  E-value=7e-09  Score=87.03  Aligned_cols=141  Identities=13%  Similarity=0.126  Sum_probs=79.7

Q ss_pred             hCCCCEEEEccCCCCCcccCCCCCCcc-CCCceehhhhHHHHhccccCCccCCCCCCCCCCCcc-eEEEEcCChhHH---
Q psy16200          8 KDGYTAIFIGIGKPNANVIPIFQGLTE-EMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKG-TVIVLGAGDTAF---   82 (183)
Q Consensus         8 ~~~~davviATGa~~p~~l~i~gg~~~-~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~VvViGgG~~g~---   82 (183)
                      +..||++|||||+. + .+++| |+.+ ...+++..+.+...+.. +            ....+ .++|+||+ .|+   
T Consensus        95 ~i~YD~LViAtG~~-~-~~~i~-G~~e~~~~~~~~~~a~~~~~~l-~------------~~~~~~~~vv~gg~-~gve~~  157 (430)
T 3hyw_A           95 KIEYDYLVIATGPK-L-VFGAE-GQEENSTSICTAEHALETQKKL-Q------------ELYANPGPVVIGAI-PGVSCF  157 (430)
T ss_dssp             EEECSEEEECCCCE-E-ECCSB-THHHHSCCCSSHHHHHHHHHHH-H------------HHHHSCCCEEEEEC-TTCCCC
T ss_pred             EEECCEEEEeCCCC-c-cCCcc-CcccCcCCcccHHHHHHHHHHH-H------------hhccCCceEEEeCC-CcEEEh
Confidence            34699999999984 4 46788 5332 22344444433222110 0            01122 35555554 232   


Q ss_pred             ----H----HHHHHHHcCCc---eEEEEEeecCCc--CCCC----HHHHH-HHHHcCcEEEeCCcceEEEccCCcEEEEE
Q psy16200         83 ----D----CATSALRCGAN---KVLVVFRKGCTN--IRAV----PEEVQ-LAWEEKCEFLPFMSPVQVDVKDNKIAGMQ  144 (183)
Q Consensus        83 ----e----~A~~l~~~G~~---~V~lv~r~~~~~--~~~~----~~~~~-~~~~~gv~~~~~~~~~~i~~~~~~v~~v~  144 (183)
                          |    ++..+.+.|.+   +|++++..+...  .+..    ...++ .+.+.||++++++.+.++..  +++   .
T Consensus       158 ~~~~e~a~~~~~~l~~~g~~~~v~v~~~~~~~~l~~~~~~~~~~~~~~l~~~l~~~GV~~~~~~~v~~v~~--~~~---~  232 (430)
T 3hyw_A          158 GPAYEFALMLHYELKKRGIRYKVPMTFITSEPYLGHFGVGGIGASKRLVEDLFAERNIDWIANVAVKAIEP--DKV---I  232 (430)
T ss_dssp             HHHHHHHHHHHHHHHHTTCGGGCCEEEECSSSSTTCTTTTCSTTHHHHHHHHHHHTTCEEECSCEEEEECS--SEE---E
T ss_pred             HHHHHHHHHHHHHHHHhcccccceeeeecccchhhhccchhhHHHHHHHHHHHHhCCeEEEeCceEEEEeC--Cce---E
Confidence                3    33344444421   478877654310  0111    12232 35678999999999998863  333   2


Q ss_pred             EEEeeecCCCCeecCCCceEEEECCEEEEcccccccC
Q psy16200        145 FNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLD  181 (183)
Q Consensus       145 ~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~  181 (183)
                      +.           ..+|+.+++++|+|++++|++|++
T Consensus       233 ~~-----------~~~g~~~~i~~d~vi~~~G~~~~~  258 (430)
T 3hyw_A          233 YE-----------DLNGNTHEVPAKFTMFMPSFQGPE  258 (430)
T ss_dssp             EE-----------CTTSCEEEEECSEEEEECEEECCH
T ss_pred             EE-----------eeCCCceEeecceEEEeccCCCch
Confidence            32           145667899999999999999863

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=98.81  E-value=2.1e-08  Score=79.66  Aligned_cols=106  Identities=16%  Similarity=0.185  Sum_probs=72.2

Q ss_pred             eEEEEcCChhHHHHHHHHHHc-CCceEEEEEeecCCcC---------------------------C---------C-CHH
Q psy16200         71 TVIVLGAGDTAFDCATSALRC-GANKVLVVFRKGCTNI---------------------------R---------A-VPE  112 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~-G~~~V~lv~r~~~~~~---------------------------~---------~-~~~  112 (183)
                      +|+|||||.+|+.+|..|++. |. +|+++++++....                           +         . ...
T Consensus        41 dVvIIGgG~aGl~aA~~la~~~G~-~V~viEk~~~~gg~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  119 (284)
T 1rp0_A           41 DVVVVGAGSAGLSAAYEISKNPNV-QVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDTYVVVKHAA  119 (284)
T ss_dssp             EEEEECCSHHHHHHHHHHHTSTTS-CEEEEESSSSCCTTTTCCSTTCCCEEEETTTHHHHHHHTCCCEECSSEEEESCHH
T ss_pred             CEEEECccHHHHHHHHHHHHcCCC-eEEEEECCCCCCCceecCCcchHHHHcCcHHHHHHHHcCCCcccCCCEEEecCHH
Confidence            599999999999999999997 87 6999998753200                           0         0 112


Q ss_pred             H-----HHHHHH-cCcEEEeCCcceEEEccCCcEEEEEEEEe--eecC-CCCeecCCCceEEEECCEEEEcccccccC
Q psy16200        113 E-----VQLAWE-EKCEFLPFMSPVQVDVKDNKIAGMQFNRT--EQNE-KGEWVEDEEQRIKLKANYIISAFGSTLLD  181 (183)
Q Consensus       113 ~-----~~~~~~-~gv~~~~~~~~~~i~~~~~~v~~v~~~~~--~~~~-~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~  181 (183)
                      +     .+.+.+ .|+++++++.+.++..+++++.++++...  .++. ++    ..++..++++|.||+|+|..++.
T Consensus       120 ~~~~~l~~~~~~~~gv~i~~~~~V~~i~~~~~~v~gv~~~~~~~~~~~~~g----~~g~~~~i~ad~VV~AtG~~s~~  193 (284)
T 1rp0_A          120 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQ----SCMDPNVMEAKIVVSSCGHDGPF  193 (284)
T ss_dssp             HHHHHHHHHHHTSTTEEEEETEEEEEEEEETTEEEEEEEEEHHHHTCTTTS----SCCCCEEEEEEEEEECCCSSSTT
T ss_pred             HHHHHHHHHHHhcCCCEEEcCcEEEEEEecCCeEEEEEEeccccccccCcc----ccCceEEEECCEEEECCCCchHH
Confidence            1     123334 69999999999999766677777765310  0000 00    11344689999999999977653

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=98.76  E-value=3.3e-08  Score=81.73  Aligned_cols=142  Identities=12%  Similarity=0.010  Sum_probs=80.4

Q ss_pred             hCCCCEEEEccCCCCCcccCCCCCCccCC---Ccee---hhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCCh--
Q psy16200          8 KDGYTAIFIGIGKPNANVIPIFQGLTEEM---GFYT---SKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGD--   79 (183)
Q Consensus         8 ~~~~davviATGa~~p~~l~i~gg~~~~~---~V~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~--   79 (183)
                      +..||.+|||||+ .++.+++| |+.+..   .++.   ..+.....+. .           . ....++.+|+++|.  
T Consensus        94 ~i~yd~LviAtG~-~~~~~~i~-G~~e~~~~~~~~~~~~~~~~~~~~~~-l-----------~-~~~~~~~~v~~~~~~~  158 (401)
T 3vrd_B           94 EFAYDRCVVAPGI-DLLYDKIE-GYSEALAAKLPHAWKAGEQTALLRRQ-L-----------E-SMDDGGVVIIAPPAPP  158 (401)
T ss_dssp             EEECSEEEECCCE-EECGGGSB-TCCSGGGGTSCCCSSCSHHHHHHHHH-H-----------H-HSCTTCEEEEECCSSS
T ss_pred             eeecceeeeccCC-ccccCCcc-CchhhcccCccceeccHHHHHHHHHH-H-----------H-hcccCCcEEEecCCcc
Confidence            3479999999998 48888898 533321   1211   1111111100 0           0 01123344443332  


Q ss_pred             ---------hHHHHHHHHHHcCC-ceEEEEEeecCCcC-CCCHHHHHH-----HHHcCcEEEeCCcceEEEccCCcEEEE
Q psy16200         80 ---------TAFDCATSALRCGA-NKVLVVFRKGCTNI-RAVPEEVQL-----AWEEKCEFLPFMSPVQVDVKDNKIAGM  143 (183)
Q Consensus        80 ---------~g~e~A~~l~~~G~-~~V~lv~r~~~~~~-~~~~~~~~~-----~~~~gv~~~~~~~~~~i~~~~~~v~~v  143 (183)
                               .++++|.++.+.+. .+|+++++.+.... +..++.+..     +++.||+++++..+..+..+..... +
T Consensus       159 i~~~~a~~e~~~~~a~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~v~~v~~~~~~~~-v  237 (401)
T 3vrd_B          159 FRCPPGPYERASQIAHYLKAHKSKSKVIILDNSQTFSKQAQFTKGWERLYGFGTENALIEWHPGPDAAVVKTDTEAMT-V  237 (401)
T ss_dssp             CBCTTHHHHHHHHHHHHHHHHCTTCEEEEECSSSSCTTHHHHHHHHHHHSCTTSTTCSEEEECTTTTCEEEEETTTTE-E
T ss_pred             EEeehHHHHHHHHHHHHHHhcCCCCEEEEEcccccccccccccHHHHHHHHHHHHhcCcEEEeCceEEEEEecccceE-E
Confidence                     45677777777663 36999987643211 112233332     2467899999999988865433222 2


Q ss_pred             EEEEeeecCCCCeecCCCceEEEECCEEEEccccccc
Q psy16200        144 QFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLL  180 (183)
Q Consensus       144 ~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~  180 (183)
                      ++             .+|  +++++|.|+++.|++|+
T Consensus       238 ~~-------------~~g--~~i~~D~vi~~~g~~~~  259 (401)
T 3vrd_B          238 ET-------------SFG--ETFKAAVINLIPPQRAG  259 (401)
T ss_dssp             EE-------------TTS--CEEECSEEEECCCEEEC
T ss_pred             Ec-------------CCC--cEEEeeEEEEecCcCCc
Confidence            22             233  37899999999999986

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=98.70  E-value=6.8e-08  Score=80.15  Aligned_cols=96  Identities=19%  Similarity=0.247  Sum_probs=66.4

Q ss_pred             ceEEEEcCChhHHHHHHHHHH---cCCceEEEEEeecCCc----CCC------CH----HHH-HHHHHcCcEEEeCCcce
Q psy16200         70 GTVIVLGAGDTAFDCATSALR---CGANKVLVVFRKGCTN----IRA------VP----EEV-QLAWEEKCEFLPFMSPV  131 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~---~G~~~V~lv~r~~~~~----~~~------~~----~~~-~~~~~~gv~~~~~~~~~  131 (183)
                      ++|+|||||..|+.+|..|++   .|. +|+|+++++...    ++.      ..    ..+ ..+.+.|++++.+ .+.
T Consensus         2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~-~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~-~v~   79 (409)
T 3h8l_A            2 TKVLVLGGRFGALTAAYTLKRLVGSKA-DVKVINKSRFSYFRPALPHVAIGVRDVDELKVDLSEALPEKGIQFQEG-TVE   79 (409)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHHGGGS-EEEEEESSSEEEECCSSCCCCSSCCCCCCEEEEHHHHTGGGTCEEEEC-EEE
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCCCC-eEEEEeCCCCceeccchhhcccCCcCHHHHHHHHHHHHhhCCeEEEEe-eEE
Confidence            469999999999999999999   886 799999865321    110      00    012 2345679999877 777


Q ss_pred             EEEccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccccccC
Q psy16200        132 QVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLD  181 (183)
Q Consensus       132 ~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~  181 (183)
                      ++..++..|   ++..           .++...++.+|.||+|+|..|+.
T Consensus        80 ~i~~~~~~V---~~~~-----------g~~~~~~~~~d~lViAtG~~~~~  115 (409)
T 3h8l_A           80 KIDAKSSMV---YYTK-----------PDGSMAEEEYDYVIVGIGAHLAT  115 (409)
T ss_dssp             EEETTTTEE---EEEC-----------TTSCEEEEECSEEEECCCCEECG
T ss_pred             EEeCCCCEE---EEcc-----------CCcccceeeCCEEEECCCCCcCc
Confidence            776543333   3321           23345679999999999998874

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=98.66  E-value=1.6e-07  Score=75.12  Aligned_cols=97  Identities=18%  Similarity=0.168  Sum_probs=66.5

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec----CC-----------cCCCC-----HHHH-----HHHHHcCcEE
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG----CT-----------NIRAV-----PEEV-----QLAWEEKCEF  124 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~----~~-----------~~~~~-----~~~~-----~~~~~~gv~~  124 (183)
                      .+|+|||||..|+.+|..|++.|. +|+|+++.+    ..           ..+..     ..++     ..+.+.|+++
T Consensus        23 ~~vvIIG~G~aGl~aA~~l~~~g~-~v~vie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i  101 (338)
T 3itj_A           23 NKVTIIGSGPAAHTAAIYLARAEI-KPILYEGMMANGIAAGGQLTTTTEIENFPGFPDGLTGSELMDRMREQSTKFGTEI  101 (338)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTC-CCEEECCSSBTTBCTTCGGGGSSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCEE
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCC-CEEEEecCCCCCCCcCcccccchhhcccCCCcccCCHHHHHHHHHHHHHHcCCEE
Confidence            469999999999999999999997 699999843    00           01111     1122     2345679999


Q ss_pred             EeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccccccC
Q psy16200        125 LPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLD  181 (183)
Q Consensus       125 ~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~  181 (183)
                      +++. +.++..+++.+. ++..            .++...++.+|.||+|+|..|..
T Consensus       102 ~~~~-v~~i~~~~~~~~-v~~~------------~~~~~~~~~~d~vvlAtG~~~~~  144 (338)
T 3itj_A          102 ITET-VSKVDLSSKPFK-LWTE------------FNEDAEPVTTDAIILATGASAKR  144 (338)
T ss_dssp             ECSC-EEEEECSSSSEE-EEET------------TCSSSCCEEEEEEEECCCEEECC
T ss_pred             EEeE-EEEEEEcCCEEE-EEEE------------ecCCCcEEEeCEEEECcCCCcCC
Confidence            9887 778865545543 2220            11223468899999999998764

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=98.64  E-value=1.1e-07  Score=76.40  Aligned_cols=90  Identities=20%  Similarity=0.235  Sum_probs=63.2

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCCc--------------------CCC-----C------HHHH-----
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTN--------------------IRA-----V------PEEV-----  114 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~~--------------------~~~-----~------~~~~-----  114 (183)
                      +|+|||||..|+.+|..|+++|. +|+++++++...                    .+.     .      ..++     
T Consensus         5 ~vvIIG~G~aGl~~A~~l~~~g~-~v~vie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   83 (357)
T 4a9w_A            5 DVVVIGGGQSGLSAGYFLRRSGL-SYVILDAEASPGGAWQHAWHSLHLFSPAGWSSIPGWPMPASQGPYPARAEVLAYLA   83 (357)
T ss_dssp             EEEEECCSHHHHHHHHHHHHSSC-CEEEECCSSSSSGGGGGSCTTCBCSSCGGGSCCSSSCCCCCSSSSCBHHHHHHHHH
T ss_pred             CEEEECcCHHHHHHHHHHHHCCC-CEEEEECCCCCCCcccCCCCCcEecCchhhhhCCCCCCCCCccCCCCHHHHHHHHH
Confidence            59999999999999999999997 699999874310                    000     0      0222     


Q ss_pred             HHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccc
Q psy16200        115 QLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGS  177 (183)
Q Consensus       115 ~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~  177 (183)
                      ..+.+.|+++++++.+.++..+++.+.+++.             .++   ++.+|.||+|+|.
T Consensus        84 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~-------------~~g---~~~~d~vV~AtG~  130 (357)
T 4a9w_A           84 QYEQKYALPVLRPIRVQRVSHFGERLRVVAR-------------DGR---QWLARAVISATGT  130 (357)
T ss_dssp             HHHHHTTCCEECSCCEEEEEEETTEEEEEET-------------TSC---EEEEEEEEECCCS
T ss_pred             HHHHHcCCEEEcCCEEEEEEECCCcEEEEEe-------------CCC---EEEeCEEEECCCC
Confidence            2235679999999999888764444321221             122   7899999999995

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=98.64  E-value=9.7e-08  Score=78.87  Aligned_cols=94  Identities=14%  Similarity=0.080  Sum_probs=62.6

Q ss_pred             cceEEEEcCChhHHHHHHHHHHcCCc-eEEEEEeecCCcC-CCCHH-------------HHHHHHHcCcEEEeCCcceEE
Q psy16200         69 KGTVIVLGAGDTAFDCATSALRCGAN-KVLVVFRKGCTNI-RAVPE-------------EVQLAWEEKCEFLPFMSPVQV  133 (183)
Q Consensus        69 ~~~VvViGgG~~g~e~A~~l~~~G~~-~V~lv~r~~~~~~-~~~~~-------------~~~~~~~~gv~~~~~~~~~~i  133 (183)
                      +|||+|||||..|+.+|..|.+.+.. +|+||++++.... |....             .++.+...||+++.. .+.+|
T Consensus         2 GKkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~v~~g~~~~~~~~~~~~~~~~~gv~~i~~-~v~~i   80 (401)
T 3vrd_B            2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNETYYTCYMSNEVIGGDRELASLRVGYDGLRAHGIQVVHD-SALGI   80 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSSEECSTTHHHHHHTSSCGGGGEECSHHHHHTTCEEECS-CEEEE
T ss_pred             cCEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCCCCCccCHHHHhcCCCCHHHHhhCHHHHHHCCCEEEEe-EEEEE
Confidence            57899999999999999999887632 6999998754211 11111             123455678888654 45556


Q ss_pred             EccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccccccC
Q psy16200        134 DVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLD  181 (183)
Q Consensus       134 ~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~  181 (183)
                      ..++..++   +             .+|  .+++.|.+|+|+|.+|+.
T Consensus        81 d~~~~~v~---~-------------~~g--~~i~yd~LviAtG~~~~~  110 (401)
T 3vrd_B           81 DPDKKLVK---T-------------AGG--AEFAYDRCVVAPGIDLLY  110 (401)
T ss_dssp             ETTTTEEE---E-------------TTS--CEEECSEEEECCCEEECG
T ss_pred             EccCcEEE---e-------------ccc--ceeecceeeeccCCcccc
Confidence            54333221   1             233  368999999999998764

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=98.62  E-value=1.3e-07  Score=78.45  Aligned_cols=91  Identities=18%  Similarity=0.226  Sum_probs=66.0

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCCcCCCCH----H---------H-----HHHHHHcCcEEEeCCcceE
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVP----E---------E-----VQLAWEEKCEFLPFMSPVQ  132 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~~~~~~~----~---------~-----~~~~~~~gv~~~~~~~~~~  132 (183)
                      ||+|||||..|+.+|..|...+. +|+|+++++..  +...    .         +     .+.+.+.|+++++++.+.+
T Consensus        11 ~~vIvGgG~AGl~aA~~L~~~~~-~itlie~~~~~--~y~~~~l~~~l~g~~~~~~l~~~~~~~~~~~~i~~~~~~~V~~   87 (385)
T 3klj_A           11 KILILGAGPAGFSAAKAALGKCD-DITMINSEKYL--PYYRPRLNEIIAKNKSIDDILIKKNDWYEKNNIKVITSEFATS   87 (385)
T ss_dssp             SEEEECCSHHHHHHHHHHTTTCS-CEEEECSSSSC--CBCGGGHHHHHHSCCCGGGTBSSCHHHHHHTTCEEECSCCEEE
T ss_pred             CEEEEcCcHHHHHHHHHHhCCCC-EEEEEECCCCC--CcccChhhHHHcCCCCHHHccCCCHHHHHHCCCEEEeCCEEEE
Confidence            59999999999999999977776 69999987542  2111    0         1     1234567999999999998


Q ss_pred             EEccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccccccCC
Q psy16200        133 VDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDN  182 (183)
Q Consensus       133 i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~  182 (183)
                      +..++..|   ++             .+|+  ++.+|.||+|+|.+|...
T Consensus        88 id~~~~~v---~~-------------~~g~--~~~yd~lvlAtG~~p~~p  119 (385)
T 3klj_A           88 IDPNNKLV---TL-------------KSGE--KIKYEKLIIASGSIANKI  119 (385)
T ss_dssp             EETTTTEE---EE-------------TTSC--EEECSEEEECCCEEECCC
T ss_pred             EECCCCEE---EE-------------CCCC--EEECCEEEEecCCCcCCC
Confidence            87543333   22             2333  689999999999998753

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=98.60  E-value=3.7e-07  Score=74.23  Aligned_cols=95  Identities=20%  Similarity=0.256  Sum_probs=69.4

Q ss_pred             EEEEcCChhHHHHHHHHHHcCCceEEEEEeecCCcCCC------------------CH----------------------
Q psy16200         72 VIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRA------------------VP----------------------  111 (183)
Q Consensus        72 VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~~~~~------------------~~----------------------  111 (183)
                      |+|||||..|+-+|..|++.|. +|+|++|++....+.                  ..                      
T Consensus         7 ViIVGaGpaGl~~A~~La~~G~-~V~v~Er~~~~~~~~~~g~~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (397)
T 3oz2_A            7 VLVVGGGPGGSTAARYAAKYGL-KTLMIEKRPEIGSPVRCGEGLSKGILNEADIKADRSFIANEVKGARIYGPSEKRPII   85 (397)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEECSSSSTTCSCCSCCEEETHHHHHTTCCCCTTTEEEEESEEEEECTTCSSCEE
T ss_pred             EEEECcCHHHHHHHHHHHHCCC-cEEEEeCCCCCCCCCceecccCHHHHHHcCCCchhhhhhcccceEEEEeCCCceEee
Confidence            9999999999999999999998 699999854310000                  00                      


Q ss_pred             ----------------H-----HHHHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCE
Q psy16200        112 ----------------E-----EVQLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANY  170 (183)
Q Consensus       112 ----------------~-----~~~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~  170 (183)
                                      .     ....+.+.|+++++++.+..+..+++.+.++...            .+++..++.+|.
T Consensus        86 ~~~~~~~~~~~~~i~R~~~~~~L~~~a~~~G~~~~~~~~v~~~~~~~~~~~~v~~~------------~~~~~~~~~a~~  153 (397)
T 3oz2_A           86 LQSEKAGNEVGYVLERDKFDKHLAALAAKAGADVWVKSPALGVIKENGKVAGAKIR------------HNNEIVDVRAKM  153 (397)
T ss_dssp             EECSSSSCCCEEEECHHHHHHHHHHHHHHHTCEEESSCCEEEEEEETTEEEEEEEE------------ETTEEEEEEEEE
T ss_pred             ccccccCCceeEEEEHHHHHHHHHHHHHhcCcEEeeeeeeeeeeeccceeeeeeec------------ccccceEEEEeE
Confidence                            0     1123456789999999988887666777655442            345667899999


Q ss_pred             EEEcccccc
Q psy16200        171 IISAFGSTL  179 (183)
Q Consensus       171 Vi~a~G~~p  179 (183)
                      ||-|-|...
T Consensus       154 vIgAdG~~S  162 (397)
T 3oz2_A          154 VIAADGFES  162 (397)
T ss_dssp             EEECCCTTC
T ss_pred             EEeCCcccc
Confidence            999999754

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=98.60  E-value=6e-07  Score=75.56  Aligned_cols=97  Identities=16%  Similarity=0.234  Sum_probs=68.5

Q ss_pred             ceEEEEcCChhHHHHHHHHHHc--CCceEEEEEeecCCc-CCCC-----------HH-----HHHHHHHcCcEEEeCCcc
Q psy16200         70 GTVIVLGAGDTAFDCATSALRC--GANKVLVVFRKGCTN-IRAV-----------PE-----EVQLAWEEKCEFLPFMSP  130 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~--G~~~V~lv~r~~~~~-~~~~-----------~~-----~~~~~~~~gv~~~~~~~~  130 (183)
                      .+|+|||||..|+.+|..|+++  |. +|+++++++... .+..           ..     ....+.+.|++++++..+
T Consensus         3 ~~VvIIGgG~AGl~aA~~L~~~~~g~-~V~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~V   81 (452)
T 3oc4_A            3 LKIVIIGASFAGISAAIASRKKYPQA-EISLIDKQATVGYLSGGLSAYFNHTINELHEARYITEEELRRQKIQLLLNREV   81 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSS-EEEEECSSSCCSSCCC----------------CCCCHHHHHHTTEEEECSCEE
T ss_pred             CCEEEECCCHHHHHHHHHHHhhCcCC-cEEEEECCCCCcccCccchhhhcCCCCCHHHhhcCCHHHHHHCCCEEEECCEE
Confidence            4699999999999999999998  76 799999876421 1110           00     112345678999888888


Q ss_pred             eEEEccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccccccCC
Q psy16200        131 VQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDN  182 (183)
Q Consensus       131 ~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~  182 (183)
                      .++..++..++   +..            .+...++.+|.+|+|+|.+|...
T Consensus        82 ~~id~~~~~v~---v~~------------~~~~~~~~~d~lviAtG~~p~~p  118 (452)
T 3oc4_A           82 VAMDVENQLIA---WTR------------KEEQQWYSYDKLILATGASQFST  118 (452)
T ss_dssp             EEEETTTTEEE---EEE------------TTEEEEEECSEEEECCCCCBCCC
T ss_pred             EEEECCCCEEE---EEe------------cCceEEEEcCEEEECCCcccCCC
Confidence            88875444443   210            12456799999999999998653

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=98.59  E-value=3.3e-07  Score=79.07  Aligned_cols=99  Identities=11%  Similarity=0.074  Sum_probs=69.4

Q ss_pred             ceEEEEcCChhHHHHHHHHHHc--CCceEEEEEeecCCcCCC------------CHH-H----HHH-HHHcCcEEEeCCc
Q psy16200         70 GTVIVLGAGDTAFDCATSALRC--GANKVLVVFRKGCTNIRA------------VPE-E----VQL-AWEEKCEFLPFMS  129 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~--G~~~V~lv~r~~~~~~~~------------~~~-~----~~~-~~~~gv~~~~~~~  129 (183)
                      ++|+|||||..|+.+|..|++.  |. +|+++++++......            ... .    ... ....+++++++..
T Consensus         2 ~~VvIIGgG~AGl~aA~~L~~~~~~~-~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   80 (565)
T 3ntd_A            2 KKILIIGGVAGGASAAARARRLSETA-EIIMFERGEYVSFANCGLPYHISGEIAQRSALVLQTPESFKARFNVEVRVKHE   80 (565)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCSSS-EEEEECSSSCSSBCGGGHHHHHTSSSCCGGGGBCCCHHHHHHHHCCEEETTEE
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCcCC-CEEEEECCCCccccccCchHHhcCCcCChHHhhccCHHHHHHhcCcEEEECCE
Confidence            4699999999999999999998  65 799999876421110            000 0    122 2347899999999


Q ss_pred             ceEEEccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccccccCC
Q psy16200        130 PVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDN  182 (183)
Q Consensus       130 ~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~  182 (183)
                      +.++..+...++   +..          ..+++..++.+|.||+|+|.+|...
T Consensus        81 V~~id~~~~~v~---~~~----------~~~g~~~~~~~d~lviAtG~~p~~p  120 (565)
T 3ntd_A           81 VVAIDRAAKLVT---VRR----------LLDGSEYQESYDTLLLSPGAAPIVP  120 (565)
T ss_dssp             EEEEETTTTEEE---EEE----------TTTCCEEEEECSEEEECCCEEECCC
T ss_pred             EEEEECCCCEEE---EEe----------cCCCCeEEEECCEEEECCCCCCCCC
Confidence            988876444443   321          1235567899999999999988643

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=98.57  E-value=5.6e-07  Score=75.66  Aligned_cols=99  Identities=10%  Similarity=0.191  Sum_probs=67.7

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCc-eEEEEEeecCCcCC--CCHH----------------HHHHHHHcCcEEEeCCcce
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGAN-KVLVVFRKGCTNIR--AVPE----------------EVQLAWEEKCEFLPFMSPV  131 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~-~V~lv~r~~~~~~~--~~~~----------------~~~~~~~~gv~~~~~~~~~  131 (183)
                      ||+|||||..|+.+|..|+++|.+ +|+|+++++.....  ..+.                .-....+.+++++.+..+.
T Consensus         2 KVvIIG~G~AGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~V~   81 (437)
T 4eqs_A            2 KIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPYVIGEVVEDRRYALAYTPEKFYDRKQITVKTYHEVI   81 (437)
T ss_dssp             CEEEECCSTTHHHHHHHHHHHCSSSCEEEEESSSCSSBCGGGHHHHHTTSSCCGGGTBCCCHHHHHHHHCCEEEETEEEE
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCCcchhHHHHcCCccchhhhhhcCHHHHHHhcCCEEEeCCeEE
Confidence            499999999999999999998832 59999986532100  0000                0112356789999888888


Q ss_pred             EEEccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccccccCC
Q psy16200        132 QVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDN  182 (183)
Q Consensus       132 ~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~  182 (183)
                      ++..+...++   +..          ..++...++.+|.+|+|+|.+|+..
T Consensus        82 ~id~~~~~~~---~~~----------~~~~~~~~~~yd~lVIATGs~p~~p  119 (437)
T 4eqs_A           82 AINDERQTVS---VLN----------RKTNEQFEESYDKLILSPGASANSL  119 (437)
T ss_dssp             EEETTTTEEE---EEE----------TTTTEEEEEECSEEEECCCEEECCC
T ss_pred             EEEccCcEEE---EEe----------ccCCceEEEEcCEEEECCCCccccc
Confidence            8865333332   221          1345667899999999999998754

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=98.57  E-value=2e-07  Score=80.80  Aligned_cols=95  Identities=16%  Similarity=0.153  Sum_probs=69.7

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCC------------------------------------c---C--C
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCT------------------------------------N---I--R  108 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~------------------------------------~---~--~  108 (183)
                      .+|+|||||..|+.+|..|++.|. +|+|+++....                                    .   +  +
T Consensus       108 ~DVVIVGgGpaGL~aA~~La~~G~-kV~VlEr~~~~~~R~~~~~g~w~~~~~~~~~~i~~g~gGag~~sdgkl~~~i~~~  186 (549)
T 3nlc_A          108 ERPIVIGFGPCGLFAGLVLAQMGF-NPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQVKDP  186 (549)
T ss_dssp             CCCEEECCSHHHHHHHHHHHHTTC-CCEEECSSCCHHHHHHHHHHHHHHCCCCTTSSSSSSTTGGGTTSCCCCCCCSCCT
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCC-eEEEEEccCcccccccchhcccccccccccccceeccCCcccccCCceEEEeccc
Confidence            469999999999999999999997 69999986311                                    0   0  0


Q ss_pred             CCH------------------------------HH-----HHHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCC
Q psy16200        109 AVP------------------------------EE-----VQLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEK  153 (183)
Q Consensus       109 ~~~------------------------------~~-----~~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~  153 (183)
                      ...                              ..     .+.+.+.|+++++++.+.++..+++++.++++        
T Consensus       187 ~~~~~~v~~~~~~~G~~~~i~~~~~p~~G~~~~~~l~~~L~~~l~~~Gv~I~~~t~V~~I~~~~~~v~gV~l--------  258 (549)
T 3nlc_A          187 NFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTL--------  258 (549)
T ss_dssp             TCHHHHHHHHHHHTTCCGGGGTBSSCCCCHHHHHHHHHHHHHHHHHTTCEEESSCCEEEEEESSSBEEEEEE--------
T ss_pred             cccHHHHHHHHHHcCCCceEeeccccccccchHHHHHHHHHHHHHhcCCEEEeCCEEEEEEEeCCEEEEEEE--------
Confidence            000                              01     11235679999999999999766677766655        


Q ss_pred             CCeecCCCceEEEECCEEEEccccccc
Q psy16200        154 GEWVEDEEQRIKLKANYIISAFGSTLL  180 (183)
Q Consensus       154 ~~~~~~~g~~~~i~~D~Vi~a~G~~p~  180 (183)
                           .+|+  ++.||.||+|+|..+.
T Consensus       259 -----~~G~--~i~Ad~VVlA~G~~s~  278 (549)
T 3nlc_A          259 -----SNGE--EIKSRHVVLAVGHSAR  278 (549)
T ss_dssp             -----TTSC--EEECSCEEECCCTTCH
T ss_pred             -----CCCC--EEECCEEEECCCCChh
Confidence                 2333  6899999999999874

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=98.54  E-value=5.5e-07  Score=71.38  Aligned_cols=94  Identities=17%  Similarity=0.212  Sum_probs=63.6

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEee--cCC-------cCCCC----HHHH-----HHHHHcCcEEEeCCcce
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRK--GCT-------NIRAV----PEEV-----QLAWEEKCEFLPFMSPV  131 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~--~~~-------~~~~~----~~~~-----~~~~~~gv~~~~~~~~~  131 (183)
                      .+|+|||||..|+.+|..|++.|. +|++++++  +..       ..+..    ..++     ..+.+.|+++++ ..+.
T Consensus        16 ~~vvIIG~G~aGl~aA~~l~~~g~-~v~lie~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~v~   93 (323)
T 3f8d_A           16 FDVIIVGLGPAAYGAALYSARYML-KTLVIGETPGGQLTEAGIVDDYLGLIEIQASDMIKVFNKHIEKYEVPVLL-DIVE   93 (323)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTC-CEEEEESSTTGGGGGCCEECCSTTSTTEEHHHHHHHHHHHHHTTTCCEEE-SCEE
T ss_pred             cCEEEECccHHHHHHHHHHHHCCC-cEEEEeccCCCeecccccccccCCCCCCCHHHHHHHHHHHHHHcCCEEEE-EEEE
Confidence            469999999999999999999997 69999985  111       01211    1222     234557899988 7777


Q ss_pred             EEEccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccccccC
Q psy16200        132 QVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLD  181 (183)
Q Consensus       132 ~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~  181 (183)
                      ++..+++.+. ++.             .++  .++.+|.||+|+|..|+.
T Consensus        94 ~i~~~~~~~~-v~~-------------~~g--~~~~~d~lvlAtG~~~~~  127 (323)
T 3f8d_A           94 KIENRGDEFV-VKT-------------KRK--GEFKADSVILGIGVKRRK  127 (323)
T ss_dssp             EEEEC--CEE-EEE-------------SSS--CEEEEEEEEECCCCEECC
T ss_pred             EEEecCCEEE-EEE-------------CCC--CEEEcCEEEECcCCCCcc
Confidence            7765433332 222             122  278999999999998764

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=98.54  E-value=4.6e-07  Score=78.73  Aligned_cols=99  Identities=11%  Similarity=0.159  Sum_probs=70.1

Q ss_pred             cceEEEEcCChhHHHHHHHHHHc--CCceEEEEEeecCCcCCC------------C-HH----HHH-HHHHcCcEEEeCC
Q psy16200         69 KGTVIVLGAGDTAFDCATSALRC--GANKVLVVFRKGCTNIRA------------V-PE----EVQ-LAWEEKCEFLPFM  128 (183)
Q Consensus        69 ~~~VvViGgG~~g~e~A~~l~~~--G~~~V~lv~r~~~~~~~~------------~-~~----~~~-~~~~~gv~~~~~~  128 (183)
                      .++|+|||||..|+.+|..|++.  |. +|+++++++......            . ..    .+. .+...++.++++.
T Consensus        36 ~~~VvIIGgG~AGl~aA~~L~~~~~g~-~V~vie~~~~~~~~~~~lp~~~~g~~~~~~~~~~~~~~~~~~~~gi~v~~~~  114 (588)
T 3ics_A           36 SRKIVVVGGVAGGASVAARLRRLSEED-EIIMVERGEYISFANCGLPYYIGGVITERQKLLVQTVERMSKRFNLDIRVLS  114 (588)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCSSS-EEEEECSSSCSSBCGGGHHHHHTTSSCCGGGGBSSCHHHHHHHTTCEEECSE
T ss_pred             CCCEEEECCcHHHHHHHHHHHhhCcCC-CEEEEECCCCccccCCCCchhhcCcCCChHHhhccCHHHHHHhcCcEEEECC
Confidence            35699999999999999999998  76 799999876421100            0 10    112 2346789999999


Q ss_pred             cceEEEccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccccccC
Q psy16200        129 SPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLD  181 (183)
Q Consensus       129 ~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~  181 (183)
                      .+.++..++..+.   +..          ..+++...+.+|.||+|+|.+|..
T Consensus       115 ~V~~id~~~~~v~---v~~----------~~~g~~~~~~~d~lviAtG~~p~~  154 (588)
T 3ics_A          115 EVVKINKEEKTIT---IKN----------VTTNETYNEAYDVLILSPGAKPIV  154 (588)
T ss_dssp             EEEEEETTTTEEE---EEE----------TTTCCEEEEECSEEEECCCEEECC
T ss_pred             EEEEEECCCCEEE---Eee----------cCCCCEEEEeCCEEEECCCCCCCC
Confidence            9988876444443   321          124556688999999999998864

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=98.54  E-value=2e-07  Score=78.42  Aligned_cols=94  Identities=16%  Similarity=0.243  Sum_probs=63.6

Q ss_pred             ceEEEEcCChhHHHHHHHHHHc--CCceEEEEEeecCCc-----CCCC------HHH-H----HHH-HHcCcEEEeCCcc
Q psy16200         70 GTVIVLGAGDTAFDCATSALRC--GANKVLVVFRKGCTN-----IRAV------PEE-V----QLA-WEEKCEFLPFMSP  130 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~--G~~~V~lv~r~~~~~-----~~~~------~~~-~----~~~-~~~gv~~~~~~~~  130 (183)
                      .+|+|||||..|+.+|..|++.  |. +|+++++++...     +|..      ..+ +    +.+ .+.|+++++++.+
T Consensus         4 ~~VvIIGgG~aGl~aA~~L~~~~~~~-~V~vie~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~gi~v~~~~~v   82 (449)
T 3kd9_A            4 KKVVIIGGGAAGMSAASRVKRLKPEW-DVKVFEATEWVSHAPCGIPYVVEGLSTPDKLMYYPPEVFIKKRGIDLHLNAEV   82 (449)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTS-EEEEECSSSCCC------------------------CTHHHHTTCEEETTCEE
T ss_pred             CcEEEECCcHHHHHHHHHHHHhCcCC-CEEEEECCCccccCCcCCccccCCCCCHHHhhhcCHHHHHHhcCcEEEecCEE
Confidence            4699999999999999999998  65 799999876321     1110      011 1    112 4678999998888


Q ss_pred             eEEEccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccccccC
Q psy16200        131 VQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLD  181 (183)
Q Consensus       131 ~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~  181 (183)
                      .++..  +..+ ++              .++...++.+|.||+|+|..|..
T Consensus        83 ~~i~~--~~~~-v~--------------~~~g~~~~~~d~lviAtG~~p~~  116 (449)
T 3kd9_A           83 IEVDT--GYVR-VR--------------ENGGEKSYEWDYLVFANGASPQV  116 (449)
T ss_dssp             EEECS--SEEE-EE--------------CSSSEEEEECSEEEECCCEEECC
T ss_pred             EEEec--CCCE-EE--------------ECCceEEEEcCEEEECCCCCCCC
Confidence            77753  2111 11              23334578999999999998864

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=98.54  E-value=5.4e-07  Score=78.13  Aligned_cols=51  Identities=16%  Similarity=0.109  Sum_probs=39.5

Q ss_pred             HHcCcEEEeCCcceEEEccC-CcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccccc
Q psy16200        118 WEEKCEFLPFMSPVQVDVKD-NKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTL  179 (183)
Q Consensus       118 ~~~gv~~~~~~~~~~i~~~~-~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p  179 (183)
                      .+.||++++++.+.++..++ +++.++++..           .+|+..++.+|.||+|+|...
T Consensus       266 ~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~-----------~~g~~~~i~a~~VVlAtGg~~  317 (571)
T 1y0p_A          266 VKRNIDLRMNTRGIEVLKDDKGTVKGILVKG-----------MYKGYYWVKADAVILATGGFA  317 (571)
T ss_dssp             HHTTCEEESSEEEEEEEECTTSCEEEEEEEE-----------TTTEEEEEECSEEEECCCCCT
T ss_pred             HhcCCEEEeCCEeeEeEEcCCCeEEEEEEEe-----------CCCcEEEEECCeEEEeCCCcc
Confidence            45689999999999987655 7788777642           246667899999999999754

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=98.53  E-value=2.6e-07  Score=73.65  Aligned_cols=94  Identities=12%  Similarity=0.042  Sum_probs=65.2

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCCc--------------CCC----CHHHH-----HHHHHcCcEEEe
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTN--------------IRA----VPEEV-----QLAWEEKCEFLP  126 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~~--------------~~~----~~~~~-----~~~~~~gv~~~~  126 (183)
                      .+|+|||||..|+.+|..|++.|. +|+++++++...              .+.    ...++     ..+.+.++.+++
T Consensus         8 ~~vvIIG~G~aGl~aA~~l~~~g~-~v~lie~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (332)
T 3lzw_A            8 YDITIIGGGPVGLFTAFYGGMRQA-SVKIIESLPQLGGQLSALYPEKYIYDVAGFPKIRAQELINNLKEQMAKFDQTICL   86 (332)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSSSCHHHHHHCTTSEECCSTTCSSEEHHHHHHHHHHHHTTSCCEEEC
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCC-CEEEEEcCCCCCceehhcCCCceEeccCCCCCCCHHHHHHHHHHHHHHhCCcEEc
Confidence            469999999999999999999997 699999864210              111    11222     123456899999


Q ss_pred             CCcceEEEccCC-cEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccc---cccC
Q psy16200        127 FMSPVQVDVKDN-KIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGS---TLLD  181 (183)
Q Consensus       127 ~~~~~~i~~~~~-~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~---~p~~  181 (183)
                      +..+.++..+++ ... ++.             .++   ++.+|.||+|+|.   .|+.
T Consensus        87 ~~~v~~i~~~~~~~~~-v~~-------------~~g---~~~~d~vVlAtG~~~~~p~~  128 (332)
T 3lzw_A           87 EQAVESVEKQADGVFK-LVT-------------NEE---THYSKTVIITAGNGAFKPRK  128 (332)
T ss_dssp             SCCEEEEEECTTSCEE-EEE-------------SSE---EEEEEEEEECCTTSCCEECC
T ss_pred             cCEEEEEEECCCCcEE-EEE-------------CCC---EEEeCEEEECCCCCcCCCCC
Confidence            999988875433 222 222             122   3899999999999   7754

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=98.52  E-value=9.2e-07  Score=75.66  Aligned_cols=98  Identities=17%  Similarity=0.249  Sum_probs=71.0

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCCc-------CCC---------------------------------
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTN-------IRA---------------------------------  109 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~~-------~~~---------------------------------  109 (183)
                      -+|+|||||..|+-+|..|++.|. +|+|+++++...       .+.                                 
T Consensus         8 ~dVvIVGgG~aGl~aA~~La~~G~-~V~liE~~~~~~~~~g~~~~~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~   86 (512)
T 3e1t_A            8 FDLIVIGGGPGGSTLASFVAMRGH-RVLLLEREAFPRHQIGESLLPATVHGICAMLGLTDEMKRAGFPIKRGGTFRWGKE   86 (512)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTC-CEEEECSSCSSCCCSCCBCCHHHHTTHHHHTTCHHHHHTTTCCEECEEEEECSSC
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCC-CEEEEccCCCCCCCCCcccCcchHHHHHHHhCcHHHHHHcCCccccCceEEecCC
Confidence            359999999999999999999997 699999864100       000                                 


Q ss_pred             ----------------------CHHH-----HHHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCc
Q psy16200        110 ----------------------VPEE-----VQLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQ  162 (183)
Q Consensus       110 ----------------------~~~~-----~~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~  162 (183)
                                            ....     .+.+.+.|+++++++.+.++..+++.+.++++..           .+|+
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~~~~V~~v~~~~~~v~gv~~~~-----------~dG~  155 (512)
T 3e1t_A           87 PEPWTFGFTRHPDDPYGFAYQVERARFDDMLLRNSERKGVDVRERHEVIDVLFEGERAVGVRYRN-----------TEGV  155 (512)
T ss_dssp             SSCEEEESSSSSSSTTCCEEBCCHHHHHHHHHHHHHHTTCEEESSCEEEEEEEETTEEEEEEEEC-----------SSSC
T ss_pred             ccccccccccCCCCCcceeeEecHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEECCEEEEEEEEe-----------CCCC
Confidence                                  0001     1123456899999999998877667777666631           3455


Q ss_pred             eEEEECCEEEEcccccc
Q psy16200        163 RIKLKANYIISAFGSTL  179 (183)
Q Consensus       163 ~~~i~~D~Vi~a~G~~p  179 (183)
                      ..++.+|.||.|.|...
T Consensus       156 ~~~i~ad~VI~AdG~~S  172 (512)
T 3e1t_A          156 ELMAHARFIVDASGNRT  172 (512)
T ss_dssp             EEEEEEEEEEECCCTTC
T ss_pred             EEEEEcCEEEECCCcch
Confidence            67899999999999865

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=98.51  E-value=4.4e-07  Score=76.77  Aligned_cols=98  Identities=19%  Similarity=0.170  Sum_probs=62.3

Q ss_pred             ceEEEEcCChhHHHHHHHHHHc--CCceEEEEEeecCCc-----CCCC-------HHHH-----------HHHH-HcCcE
Q psy16200         70 GTVIVLGAGDTAFDCATSALRC--GANKVLVVFRKGCTN-----IRAV-------PEEV-----------QLAW-EEKCE  123 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~--G~~~V~lv~r~~~~~-----~~~~-------~~~~-----------~~~~-~~gv~  123 (183)
                      ++|+|||||..|+.+|..|++.  |. +|+|+++++...     ++..       ...+           .... ..+++
T Consensus         4 ~~VvIIGaG~aGl~aA~~L~~~~~g~-~Vtvie~~~~~~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gi~   82 (472)
T 3iwa_A            4 KHVVVIGAVALGPKAACRFKRLDPEA-HVTMIDQASRISYGGCGIPYYVSGEVSNIESLQATPYNVVRDPEFFRINKDVE   82 (472)
T ss_dssp             CEEEEECCSSHHHHHHHHHHHHCTTS-EEEEECCC-------------------------------------------CE
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCcCC-CEEEEECCCcccccccccchhhcCCCCchHHhccccchhccCHHHHhhhcCcE
Confidence            4699999999999999999998  76 799999876421     1110       0011           1112 36788


Q ss_pred             EEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccccccC
Q psy16200        124 FLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLD  181 (183)
Q Consensus       124 ~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~  181 (183)
                      ++++..+.++..+...+.   +..          ..+|+...+.+|.||+|+|..|..
T Consensus        83 ~~~~~~V~~id~~~~~v~---~~~----------~~~g~~~~~~~d~lviAtG~~p~~  127 (472)
T 3iwa_A           83 ALVETRAHAIDRAAHTVE---IEN----------LRTGERRTLKYDKLVLALGSKANR  127 (472)
T ss_dssp             EECSEEEEEEETTTTEEE---EEE----------TTTCCEEEEECSEEEECCCEEECC
T ss_pred             EEECCEEEEEECCCCEEE---Eee----------cCCCCEEEEECCEEEEeCCCCcCC
Confidence            888888888765444332   321          123556789999999999998864

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=98.51  E-value=9.8e-07  Score=74.70  Aligned_cols=100  Identities=12%  Similarity=0.133  Sum_probs=66.9

Q ss_pred             ceEEEEcCChhHHHHHHHHHH---cCCce---EEEEEeecCCc--C----------------------------------
Q psy16200         70 GTVIVLGAGDTAFDCATSALR---CGANK---VLVVFRKGCTN--I----------------------------------  107 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~---~G~~~---V~lv~r~~~~~--~----------------------------------  107 (183)
                      ++|+|||||..|+.+|..|++   .|. +   |+++++++...  +                                  
T Consensus         3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~-~~~~V~v~E~~~~~GG~w~~~~~~g~~~~g~~~~~~~y~~l~~~~~~~~~~~   81 (464)
T 2xve_A            3 TRIAILGAGPSGMAQLRAFQSAQEKGA-EIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSSMYRYLWSNGPKECLEF   81 (464)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHHTTC-CCCEEEEECSSSSSCGGGSCCSCCSBCTTSSBCCCCCCTTCBCSSCGGGTCB
T ss_pred             CcEEEECccHHHHHHHHHHHhhhhcCC-CCCcEEEEEcCCCCCCEeecCCCCCccccCCCCcCccccchhhcCChhhccc
Confidence            469999999999999999999   886 6   99999864210  0                                  


Q ss_pred             -------------CC--CHHHH-----HHHHHcCcE--EEeCCcceEEEccCC--cEEEEEEEEeeecCCCCeecCCCce
Q psy16200        108 -------------RA--VPEEV-----QLAWEEKCE--FLPFMSPVQVDVKDN--KIAGMQFNRTEQNEKGEWVEDEEQR  163 (183)
Q Consensus       108 -------------~~--~~~~~-----~~~~~~gv~--~~~~~~~~~i~~~~~--~v~~v~~~~~~~~~~~~~~~~~g~~  163 (183)
                                   +.  ...++     ..+.+.|+.  +++++.+.++..+++  ..+ |++.+.          .+|+.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~i~~~~~V~~v~~~~~~~~~~-V~~~~~----------~~g~~  150 (464)
T 2xve_A           82 ADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFT-VTVQDH----------TTDTI  150 (464)
T ss_dssp             TTBCHHHHHSSCCCSSCBHHHHHHHHHHHHHHHTCGGGEECSEEEEEEEEETTTTEEE-EEEEET----------TTTEE
T ss_pred             CCCCCCcccCCCCCCCCCHHHHHHHHHHHHHHcCCcceEEeCCEEEEEEEcCCCCcEE-EEEEEc----------CCCce
Confidence                         00  01111     123445887  888888888865333  222 444310          13445


Q ss_pred             EEEECCEEEEccc--ccccC
Q psy16200        164 IKLKANYIISAFG--STLLD  181 (183)
Q Consensus       164 ~~i~~D~Vi~a~G--~~p~~  181 (183)
                      .++.+|.||+|+|  ..|+.
T Consensus       151 ~~~~~d~VVvAtG~~s~p~~  170 (464)
T 2xve_A          151 YSEEFDYVVCCTGHFSTPYV  170 (464)
T ss_dssp             EEEEESEEEECCCSSSSBCC
T ss_pred             EEEEcCEEEECCCCCCCCcc
Confidence            6789999999999  67764

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=98.50  E-value=1.2e-06  Score=75.98  Aligned_cols=52  Identities=15%  Similarity=0.116  Sum_probs=39.9

Q ss_pred             HHcCcEEEeCCcceEEEccC-CcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEccccccc
Q psy16200        118 WEEKCEFLPFMSPVQVDVKD-NKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLL  180 (183)
Q Consensus       118 ~~~gv~~~~~~~~~~i~~~~-~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~  180 (183)
                      .+.|+++++++.+.++..++ +++.++++..           .+|+..++.+|.||+|+|-...
T Consensus       261 ~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~-----------~~g~~~~i~A~~VVlAtGg~s~  313 (566)
T 1qo8_A          261 KEQGIDTRLNSRVVKLVVNDDHSVVGAVVHG-----------KHTGYYMIGAKSVVLATGGYGM  313 (566)
T ss_dssp             HHTTCCEECSEEEEEEEECTTSBEEEEEEEE-----------TTTEEEEEEEEEEEECCCCCTT
T ss_pred             HhcCCEEEeCCEEEEEEECCCCcEEEEEEEe-----------CCCcEEEEEcCEEEEecCCccc
Confidence            45689999999999987656 7888777642           2455668999999999997553

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=98.49  E-value=4.7e-07  Score=75.87  Aligned_cols=32  Identities=34%  Similarity=0.591  Sum_probs=29.6

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      +|+|||||..|+.+|..|++.|. +|+|+++.+
T Consensus        29 dViIIGgG~AGl~aA~~La~~G~-~V~llEk~~   60 (417)
T 3v76_A           29 DVVIIGAGAAGMMCAIEAGKRGR-RVLVIDHAR   60 (417)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTC-CEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCC-cEEEEeCCC
Confidence            59999999999999999999997 699999864

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=98.49  E-value=9.6e-07  Score=69.22  Aligned_cols=94  Identities=16%  Similarity=0.099  Sum_probs=60.6

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCC--------cCCCC----HHHH-H----HHHHc-CcEEEeCCcce
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCT--------NIRAV----PEEV-Q----LAWEE-KCEFLPFMSPV  131 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~--------~~~~~----~~~~-~----~~~~~-gv~~~~~~~~~  131 (183)
                      .+|+|||||..|+.+|..|++.|. +|++++++...        ..+..    ..++ .    .+.+. ++.++.. .+.
T Consensus         3 ~~vvIIG~G~aGl~aA~~l~~~g~-~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~   80 (297)
T 3fbs_A            3 FDVIIIGGSYAGLSAALQLGRARK-NILLVDAGERRNRFASHSHGFLGQDGKAPGEIIAEARRQIERYPTIHWVEG-RVT   80 (297)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTC-CEEEEECCCCGGGGCSCCCSSTTCTTCCHHHHHHHHHHHHTTCTTEEEEES-CEE
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCC-CEEEEeCCCcccccchhhcCCcCCCCCCHHHHHHHHHHHHHhcCCeEEEEe-EEE
Confidence            359999999999999999999997 69999974321        01111    1222 1    22333 6777644 666


Q ss_pred             EEEccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccccccC
Q psy16200        132 QVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLD  181 (183)
Q Consensus       132 ~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~  181 (183)
                      ++..+++... +++             .++  .++.+|.||+|+|..|+.
T Consensus        81 ~i~~~~~~~~-v~~-------------~~g--~~~~~d~vviAtG~~~~~  114 (297)
T 3fbs_A           81 DAKGSFGEFI-VEI-------------DGG--RRETAGRLILAMGVTDEL  114 (297)
T ss_dssp             EEEEETTEEE-EEE-------------TTS--CEEEEEEEEECCCCEEEC
T ss_pred             EEEEcCCeEE-EEE-------------CCC--CEEEcCEEEECCCCCCCC
Confidence            6654333322 222             223  368999999999998864

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=98.48  E-value=3.3e-07  Score=76.85  Aligned_cols=92  Identities=18%  Similarity=0.330  Sum_probs=63.2

Q ss_pred             ceEEEEcCChhHHHHHHHHHH---cCCceEEEEEeecCCc-CCC---------CHHHH-----HHHHHcCcEEEeCCcce
Q psy16200         70 GTVIVLGAGDTAFDCATSALR---CGANKVLVVFRKGCTN-IRA---------VPEEV-----QLAWEEKCEFLPFMSPV  131 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~---~G~~~V~lv~r~~~~~-~~~---------~~~~~-----~~~~~~gv~~~~~~~~~  131 (183)
                      ++|+|||||..|+.+|..|++   .|. +|+|+++++... .+.         ..+++     ..+.+.|++++. ..+.
T Consensus         5 ~~vvIIGgG~aGl~aA~~L~~~~~~g~-~Vtlie~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~gv~~~~-~~v~   82 (437)
T 3sx6_A            5 AHVVILGAGTGGMPAAYEMKEALGSGH-EVTLISANDYFQFVPSNPWVGVGWKERDDIAFPIRHYVERKGIHFIA-QSAE   82 (437)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHHGGGS-EEEEECSSSEEECGGGHHHHHHTSSCHHHHEEECHHHHHTTTCEEEC-SCEE
T ss_pred             CcEEEECCcHHHHHHHHHHhccCCCcC-EEEEEeCCCCCcccCCccccccCccCHHHHHHHHHHHHHHCCCEEEE-eEEE
Confidence            579999999999999999998   776 799999876421 111         11111     233457899874 5677


Q ss_pred             EEEccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccccccC
Q psy16200        132 QVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLD  181 (183)
Q Consensus       132 ~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~  181 (183)
                      ++..++..|   ++             .++  .++.+|.||+|+|..|+.
T Consensus        83 ~id~~~~~V---~~-------------~~g--~~i~~d~lviAtG~~~~~  114 (437)
T 3sx6_A           83 QIDAEAQNI---TL-------------ADG--NTVHYDYLMIATGPKLAF  114 (437)
T ss_dssp             EEETTTTEE---EE-------------TTS--CEEECSEEEECCCCEECG
T ss_pred             EEEcCCCEE---EE-------------CCC--CEEECCEEEECCCCCcCc
Confidence            776433322   22             223  368999999999999874

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=98.47  E-value=1.1e-06  Score=72.64  Aligned_cols=96  Identities=17%  Similarity=0.185  Sum_probs=65.4

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCCc------C-CCC---------------------------------
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTN------I-RAV---------------------------------  110 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~~------~-~~~---------------------------------  110 (183)
                      +|+|||||..|+-+|..|++.|. +|+|++++....      + +..                                 
T Consensus         7 dVvIIGgG~aGl~~A~~La~~G~-~V~v~E~~~~~~~~~g~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~   85 (421)
T 3nix_A            7 DVLVIGAGPAGTVAASLVNKSGF-KVKIVEKQKFPRFVIGESLLPRCMEHLDEAGFLDAVKAQGFQQKFGAKFVRGKEIA   85 (421)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTC-CEEEECSSCSSCCCSCCBCCGGGHHHHHHTTCHHHHHHTTCEEECEEEEEETTEEE
T ss_pred             cEEEECCCHHHHHHHHHHHhCCC-CEEEEeCCCCCCCcccCcccHhHHHHHHHcCChHHHHHcCCcccCCcEEEeCCeeE
Confidence            59999999999999999999997 699999864110      0 000                                 


Q ss_pred             -------------------HHH-----HHHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCceEEE
Q psy16200        111 -------------------PEE-----VQLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKL  166 (183)
Q Consensus       111 -------------------~~~-----~~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i  166 (183)
                                         ...     .+.+.+.|+++++++.+.++..+++... +.+..           .+|+..++
T Consensus        86 ~~~~~~~~~~~~~~~~~~~r~~~~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~-v~v~~-----------~~g~~~~~  153 (421)
T 3nix_A           86 DFNFSDQFSNGWNWTWQVPRGNFDKTLADEAARQGVDVEYEVGVTDIKFFGTDSV-TTIED-----------INGNKREI  153 (421)
T ss_dssp             EEETTSCSSCSCCCEEECCHHHHHHHHHHHHHHHTCEEECSEEEEEEEEETTEEE-EEEEE-----------TTSCEEEE
T ss_pred             EEeehhhcCCCCCceeEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEE-EEEEc-----------CCCCEEEE
Confidence                               001     1123445888888888888765444332 33321           35666689


Q ss_pred             ECCEEEEcccccc
Q psy16200        167 KANYIISAFGSTL  179 (183)
Q Consensus       167 ~~D~Vi~a~G~~p  179 (183)
                      .+|.||.|.|..+
T Consensus       154 ~a~~vV~A~G~~s  166 (421)
T 3nix_A          154 EARFIIDASGYGR  166 (421)
T ss_dssp             EEEEEEECCGGGC
T ss_pred             EcCEEEECCCCch
Confidence            9999999999764

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.46  E-value=5.3e-07  Score=74.09  Aligned_cols=94  Identities=13%  Similarity=0.123  Sum_probs=63.9

Q ss_pred             CcceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCCcC--CC---------CHHH-----HHHHHHcCcEEEeCCcce
Q psy16200         68 LKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNI--RA---------VPEE-----VQLAWEEKCEFLPFMSPV  131 (183)
Q Consensus        68 ~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~~~--~~---------~~~~-----~~~~~~~gv~~~~~~~~~  131 (183)
                      -+.+|+|||||..|+.+|..|+++|  +|+|+++++....  +.         ..+.     ...+.+.|++++.++.+.
T Consensus         7 ~~~~vvIIGgG~AGl~aA~~l~~~g--~V~lie~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~g~~v~   84 (367)
T 1xhc_A            7 HGSKVVIVGNGPGGFELAKQLSQTY--EVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSLDWYRKRGIEIRLAEEAK   84 (367)
T ss_dssp             --CEEEEECCSHHHHHHHHHHTTTS--EEEEECSSSSCCCCSTTHHHHHTTSSCGGGGCSSCHHHHHHHTEEEECSCCEE
T ss_pred             CCCcEEEECCcHHHHHHHHHHhhcC--CEEEEECCCCCccccchhHHHHhCCCCHHHhccCCHHHHHhCCcEEEECCEEE
Confidence            3457999999999999999999998  6999998754210  00         0011     123456789988888777


Q ss_pred             EEEccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccccccCC
Q psy16200        132 QVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDN  182 (183)
Q Consensus       132 ~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~  182 (183)
                      .+..+...|   + .             ++  .++.+|.||+|+|.+|+..
T Consensus        85 ~id~~~~~V---~-~-------------~g--~~~~~d~lViATGs~p~~p  116 (367)
T 1xhc_A           85 LIDRGRKVV---I-T-------------EK--GEVPYDTLVLATGARAREP  116 (367)
T ss_dssp             EEETTTTEE---E-E-------------SS--CEEECSEEEECCCEEECCC
T ss_pred             EEECCCCEE---E-E-------------CC--cEEECCEEEECCCCCCCCC
Confidence            775432222   1 1             22  2689999999999998754

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=98.46  E-value=1.5e-06  Score=72.98  Aligned_cols=98  Identities=11%  Similarity=0.113  Sum_probs=67.6

Q ss_pred             eEEEEcCChhHHHHHHHHHHc--CCceEEEEEeecCCc-CCC-----------CHHH-----HHHHHHcCcEEEeCCcce
Q psy16200         71 TVIVLGAGDTAFDCATSALRC--GANKVLVVFRKGCTN-IRA-----------VPEE-----VQLAWEEKCEFLPFMSPV  131 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~--G~~~V~lv~r~~~~~-~~~-----------~~~~-----~~~~~~~gv~~~~~~~~~  131 (183)
                      +|+|||||..|+.+|..|+++  |. +|+|+++++... .+.           ..++     ...+.+.|++++.+..+.
T Consensus         2 dvvIIG~G~aGl~aA~~l~~~~~g~-~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~   80 (447)
T 1nhp_A            2 KVIVLGSSHGGYEAVEELLNLHPDA-EIQWYEKGDFISFLSAGMQLYLEGKVKDVNSVRYMTGEKMESRGVNVFSNTEIT   80 (447)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTS-EEEEEESSSSSSBCGGGHHHHHTTSSCCGGGSBSCCHHHHHHTTCEEEETEEEE
T ss_pred             eEEEECCCHHHHHHHHHHHHhCcCC-eEEEEECCCccCcccccchhhhcCccCCHHHhhcCCHHHHHHCCCEEEECCEEE
Confidence            599999999999999999998  76 799999875311 110           0111     123456789998888887


Q ss_pred             EEEccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccccccCC
Q psy16200        132 QVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDN  182 (183)
Q Consensus       132 ~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~  182 (183)
                      .+..+...+   ++..          ..+|+..++.+|.||+|+|..|...
T Consensus        81 ~i~~~~~~v---~~~~----------~~~g~~~~~~~d~lviAtG~~p~~p  118 (447)
T 1nhp_A           81 AIQPKEHQV---TVKD----------LVSGEERVENYDKLIISPGAVPFEL  118 (447)
T ss_dssp             EEETTTTEE---EEEE----------TTTCCEEEEECSEEEECCCEEECCC
T ss_pred             EEeCCCCEE---EEEe----------cCCCceEEEeCCEEEEcCCCCcCCC
Confidence            776444433   2321          0234455789999999999988653

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=98.45  E-value=9.9e-07  Score=70.68  Aligned_cols=92  Identities=12%  Similarity=0.045  Sum_probs=63.0

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCC--------------cCCC----CHHHH-----HHHHHcCcEEEe
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCT--------------NIRA----VPEEV-----QLAWEEKCEFLP  126 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~--------------~~~~----~~~~~-----~~~~~~gv~~~~  126 (183)
                      .+|+|||||..|+.+|..|++.|. +|+++++++..              ..+.    ...++     ..+.+.++.+++
T Consensus         6 ~~vvIIG~G~aGl~aA~~l~~~g~-~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~   84 (335)
T 2zbw_A            6 TDVLIVGAGPTGLFAGFYVGMRGL-SFRFVDPLPEPGGQLTALYPEKYIYDVAGFPKVYAKDLVKGLVEQVAPFNPVYSL   84 (335)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTC-CEEEEESSSSSCHHHHHTCTTSEECCSTTCSSEEHHHHHHHHHHHHGGGCCEEEE
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCC-CEEEEeCCCCCCCeeeccCCCceeeccCCCCCCCHHHHHHHHHHHHHHcCCEEEe
Confidence            459999999999999999999997 69999986421              0111    01221     223456899988


Q ss_pred             CCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEccccc
Q psy16200        127 FMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGST  178 (183)
Q Consensus       127 ~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~  178 (183)
                      +..+.++..+++.++ ++.             .++  .++.+|.||+|+|..
T Consensus        85 ~~~v~~i~~~~~~~~-v~~-------------~~g--~~~~~~~lv~AtG~~  120 (335)
T 2zbw_A           85 GERAETLEREGDLFK-VTT-------------SQG--NAYTAKAVIIAAGVG  120 (335)
T ss_dssp             SCCEEEEEEETTEEE-EEE-------------TTS--CEEEEEEEEECCTTS
T ss_pred             CCEEEEEEECCCEEE-EEE-------------CCC--CEEEeCEEEECCCCC
Confidence            988888865433222 221             123  358899999999983

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=98.45  E-value=9.7e-07  Score=73.19  Aligned_cols=93  Identities=16%  Similarity=0.233  Sum_probs=64.2

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCc-eEEEEEeecCCcC--CC-C---------HH-----HHHHHHHcCcEEEeCCcce
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGAN-KVLVVFRKGCTNI--RA-V---------PE-----EVQLAWEEKCEFLPFMSPV  131 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~-~V~lv~r~~~~~~--~~-~---------~~-----~~~~~~~~gv~~~~~~~~~  131 (183)
                      ++|+|||||..|+.+|..|++.|.+ +|+++++++....  +. .         ..     ....+.+.+++++. ..+.
T Consensus         2 k~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~-~~v~   80 (404)
T 3fg2_P            2 DTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHLPYQRPPLSKAYLKSGGDPNSLMFRPEKFFQDQAIELIS-DRMV   80 (404)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCSCEEEECCSSSSSBCSGGGGTGGGGSCCCTTSSBSSCHHHHHHTTEEEEC-CCEE
T ss_pred             CCEEEEcChHHHHHHHHHHHhhCcCCCEEEEeCCCCCCCCCccCCHHHHCCCCCHHHccCCCHHHHHhCCCEEEE-EEEE
Confidence            4699999999999999999999853 6999998653100  00 0         00     11234567899988 7777


Q ss_pred             EEEccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccccccC
Q psy16200        132 QVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLD  181 (183)
Q Consensus       132 ~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~  181 (183)
                      ++..+...+   ++             .++  .++.+|.+|+|+|..|..
T Consensus        81 ~id~~~~~v---~~-------------~~g--~~~~~d~lvlAtG~~p~~  112 (404)
T 3fg2_P           81 SIDREGRKL---LL-------------ASG--TAIEYGHLVLATGARNRM  112 (404)
T ss_dssp             EEETTTTEE---EE-------------SSS--CEEECSEEEECCCEEECC
T ss_pred             EEECCCCEE---EE-------------CCC--CEEECCEEEEeeCCCccC
Confidence            776433322   22             233  368999999999988764

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=98.45  E-value=7.8e-07  Score=74.83  Aligned_cols=99  Identities=17%  Similarity=0.221  Sum_probs=70.9

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCCcC---CC--------------------------------------
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNI---RA--------------------------------------  109 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~~~---~~--------------------------------------  109 (183)
                      +|+|||||..|+-+|..|++.|. +|+|+++++....   ..                                      
T Consensus         8 dVvIVGaG~aGl~aA~~La~~G~-~V~vlE~~~~~~~g~~~~g~~l~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~~~   86 (453)
T 3atr_A            8 DVLIIGGGFAGSSAAYQLSRRGL-KILLVDSKPWNRIGDKPCGDAVSKAHFDKLGMPYPKGEELENKINGIKLYSPDMQT   86 (453)
T ss_dssp             SEEEECCSHHHHHHHHHHSSSSC-CEEEECSSCGGGTTCSCCCCEEEHHHHHHTTCCCCCGGGEEEEEEEEEEECTTSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCC-CEEEEECCCCCCCCcccccccccHHHHHHhcCCCCchHHHHhhhcceEEECCCCce
Confidence            59999999999999999999997 6999998643100   00                                      


Q ss_pred             -----------CHHHH-----HHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEE
Q psy16200        110 -----------VPEEV-----QLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIIS  173 (183)
Q Consensus       110 -----------~~~~~-----~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~  173 (183)
                                 ....+     +.+.+.|+++++++.+.++..+++.++++++..          ..+|+..++.+|.||.
T Consensus        87 ~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~----------~~~G~~~~~~ad~VV~  156 (453)
T 3atr_A           87 VWTVNGEGFELNAPLYNQRVLKEAQDRGVEIWDLTTAMKPIFEDGYVKGAVLFN----------RRTNEELTVYSKVVVE  156 (453)
T ss_dssp             EEEEEEEEEEECHHHHHHHHHHHHHHTTCEEESSEEEEEEEEETTEEEEEEEEE----------TTTTEEEEEECSEEEE
T ss_pred             EEeECCCcEEEcHHHHHHHHHHHHHHcCCEEEeCcEEEEEEEECCEEEEEEEEE----------cCCCceEEEEcCEEEE
Confidence                       00011     223457899999999988876666776666632          0145566899999999


Q ss_pred             ccccccc
Q psy16200        174 AFGSTLL  180 (183)
Q Consensus       174 a~G~~p~  180 (183)
                      |.|..+.
T Consensus       157 AdG~~s~  163 (453)
T 3atr_A          157 ATGYSRS  163 (453)
T ss_dssp             CCGGGCT
T ss_pred             CcCCchh
Confidence            9998653

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=98.44  E-value=5e-07  Score=75.67  Aligned_cols=92  Identities=20%  Similarity=0.298  Sum_probs=58.0

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCC-ceEEEEEeecCCcC-CCCHH---------HH----H-HHHHcCcEEEeCCcceEE
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGA-NKVLVVFRKGCTNI-RAVPE---------EV----Q-LAWEEKCEFLPFMSPVQV  133 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~-~~V~lv~r~~~~~~-~~~~~---------~~----~-~~~~~gv~~~~~~~~~~i  133 (183)
                      |+|||||||+.|+.+|..|.+++. -+|+||++++.... |....         ++    . .+.+.||+++.. .+++|
T Consensus         3 K~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~~~~~p~l~~v~~g~~~~~~i~~~~~~~~~~~gv~~i~~-~v~~I   81 (430)
T 3hyw_A            3 KHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFGFTPAFPHLAMGWRKFEDISVPLAPLLPKFNIEFINE-KAESI   81 (430)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEEECGGGHHHHHHTCSCGGGSEEESTTTGGGGTEEEECS-CEEEE
T ss_pred             CcEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCCCccCccHHHHhcCCCCHHHhhhcHHHHHHHCCcEEEEe-EEEEE
Confidence            679999999999999999998762 16999998764211 11111         00    0 123346766544 45555


Q ss_pred             EccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEccccccc
Q psy16200        134 DVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLL  180 (183)
Q Consensus       134 ~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~  180 (183)
                      ..++..|+   +             .+|+  +++.|.+|+|+|.+++
T Consensus        82 d~~~~~V~---~-------------~~g~--~i~YD~LViAtG~~~~  110 (430)
T 3hyw_A           82 DPDANTVT---T-------------QSGK--KIEYDYLVIATGPKLV  110 (430)
T ss_dssp             ETTTTEEE---E-------------TTCC--EEECSEEEECCCCEEE
T ss_pred             ECCCCEEE---E-------------CCCC--EEECCEEEEeCCCCcc
Confidence            43323221   2             2333  6899999999998753

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=98.43  E-value=1.5e-06  Score=73.11  Aligned_cols=98  Identities=13%  Similarity=0.020  Sum_probs=67.6

Q ss_pred             eEEEEcCChhHHHHHHHHHHc--CCceEEEEEeecCC-cCC---------C----CHHH-----HHHHHHcCcEEEeCCc
Q psy16200         71 TVIVLGAGDTAFDCATSALRC--GANKVLVVFRKGCT-NIR---------A----VPEE-----VQLAWEEKCEFLPFMS  129 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~--G~~~V~lv~r~~~~-~~~---------~----~~~~-----~~~~~~~gv~~~~~~~  129 (183)
                      +|+|||||..|+.+|..|++.  |. +|+++++++.. ..+         .    ....     ...+.+.|++++.+..
T Consensus         2 dvvIIGgG~aGl~aA~~l~~~~~g~-~V~lie~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~   80 (452)
T 2cdu_A            2 KVIVVGCTHAGTFAVKQTIADHPDA-DVTAYEMNDNISFLSCGIALYLGKEIKNNDPRGLFYSSPEELSNLGANVQMRHQ   80 (452)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTC-EEEEEESSSCCCBCGGGHHHHHTTCBGGGCGGGGBSCCHHHHHHTTCEEEESEE
T ss_pred             eEEEECCCHHHHHHHHHHHhhCcCC-cEEEEECCCCCCcccccchhhhcCCcccCCHHHhhhcCHHHHHHcCCEEEeCCE
Confidence            599999999999999999998  86 79999987531 000         0    1111     1234567899988888


Q ss_pred             ceEEEccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccccccCC
Q psy16200        130 PVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDN  182 (183)
Q Consensus       130 ~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~  182 (183)
                      +..+..++..+   ++..          ..+++..++.+|.+|+|+|..|...
T Consensus        81 v~~i~~~~~~v---~v~~----------~~~g~~~~~~~d~lviAtGs~p~~p  120 (452)
T 2cdu_A           81 VTNVDPETKTI---KVKD----------LITNEEKTEAYDKLIMTTGSKPTVP  120 (452)
T ss_dssp             EEEEEGGGTEE---EEEE----------TTTCCEEEEECSEEEECCCEEECCC
T ss_pred             EEEEEcCCCEE---EEEe----------cCCCceEEEECCEEEEccCCCcCCC
Confidence            87776433433   2321          0133456799999999999988653

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=98.43  E-value=1.2e-06  Score=73.38  Aligned_cols=95  Identities=12%  Similarity=0.135  Sum_probs=66.7

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCc-eEEEEEeecCCc----------CCCC--HHH-----HHHHHHcCcEEEeCCcce
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGAN-KVLVVFRKGCTN----------IRAV--PEE-----VQLAWEEKCEFLPFMSPV  131 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~-~V~lv~r~~~~~----------~~~~--~~~-----~~~~~~~gv~~~~~~~~~  131 (183)
                      .+|+|||||..|+.+|..|++.|.+ +|+++++++...          +...  ...     .+.+.+.|++++++..+.
T Consensus         5 ~~vvIIGgG~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~   84 (431)
T 1q1r_A            5 DNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRTPDAYAAQNIQLLGGTQVT   84 (431)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBCSGGGGTTTTTTCSCSGGGBSSCHHHHHHTTEEEECSCCEE
T ss_pred             CcEEEEcCHHHHHHHHHHHHccCcCCCEEEEECCCCCCCcCCCCcHHHhCCCCChHHhcccCHHHHHhCCCEEEeCCEEE
Confidence            4699999999999999999999853 699999764310          0000  001     134567799999998888


Q ss_pred             EEEccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccccccCC
Q psy16200        132 QVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDN  182 (183)
Q Consensus       132 ~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~  182 (183)
                      .+..++..   +++             .+|+  ++.+|.||+|+|..|+..
T Consensus        85 ~i~~~~~~---v~~-------------~~g~--~~~~d~lviAtG~~p~~~  117 (431)
T 1q1r_A           85 AINRDRQQ---VIL-------------SDGR--ALDYDRLVLATGGRPRPL  117 (431)
T ss_dssp             EEETTTTE---EEE-------------TTSC--EEECSEEEECCCEEECCC
T ss_pred             EEECCCCE---EEE-------------CCCC--EEECCEEEEcCCCCccCC
Confidence            88653332   223             2232  689999999999998653

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=98.42  E-value=2.7e-06  Score=73.84  Aligned_cols=52  Identities=13%  Similarity=0.100  Sum_probs=39.7

Q ss_pred             HHcCcEEEeCCcceEEEccC-CcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEccccccc
Q psy16200        118 WEEKCEFLPFMSPVQVDVKD-NKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLL  180 (183)
Q Consensus       118 ~~~gv~~~~~~~~~~i~~~~-~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~  180 (183)
                      .+.||++++++.+.++..++ +++.++++..           .+|+..++.+|.||+|+|..++
T Consensus       266 ~~~gv~i~~~t~v~~l~~~~~g~v~GV~~~~-----------~~G~~~~i~A~~VVlAtGg~~~  318 (572)
T 1d4d_A          266 VKRGTDIRLNSRVVRILEDASGKVTGVLVKG-----------EYTGYYVIKADAVVIAAGGFAK  318 (572)
T ss_dssp             HHTTCEEESSEEEEEEEEC--CCEEEEEEEE-----------TTTEEEEEECSEEEECCCCCTT
T ss_pred             HHcCCeEEecCEEEEEEECCCCeEEEEEEEe-----------CCCcEEEEEcCEEEEeCCCCcc
Confidence            45689999999999987555 7788777642           2466678999999999997654

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=98.39  E-value=2e-06  Score=71.51  Aligned_cols=93  Identities=19%  Similarity=0.204  Sum_probs=65.7

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCc-eEEEEEeecCCcCCCC----HH-H-------------HHHHHHcCcEEEeCCcc
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGAN-KVLVVFRKGCTNIRAV----PE-E-------------VQLAWEEKCEFLPFMSP  130 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~-~V~lv~r~~~~~~~~~----~~-~-------------~~~~~~~gv~~~~~~~~  130 (183)
                      ++|+|||||..|+.+|..|.++|.+ +|+++++++..  +..    .. .             ...+.+.++++++++.+
T Consensus         3 ~~vvIIGaG~AGl~aA~~L~~~g~~~~V~li~~~~~~--~y~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~v   80 (410)
T 3ef6_A            3 THVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHL--PYDRPSLSKAVLDGSLERPPILAEADWYGEARIDMLTGPEV   80 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEECSSSS--SBCSGGGGTHHHHTSSSSCCBSSCTTHHHHTTCEEEESCCE
T ss_pred             CCEEEEcccHHHHHHHHHHHccCcCCeEEEEECCCCC--CcCCccccHHHhCCCCCHHHhcCCHHHHHHCCCEEEeCCEE
Confidence            4699999999999999999999852 49999987542  211    00 0             11235678999999888


Q ss_pred             eEEEccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccccccCC
Q psy16200        131 VQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDN  182 (183)
Q Consensus       131 ~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~  182 (183)
                      ..+..+...+   ++             .+++  ++.+|.||+|+|..|...
T Consensus        81 ~~id~~~~~v---~~-------------~~g~--~~~~d~lvlAtG~~p~~~  114 (410)
T 3ef6_A           81 TALDVQTRTI---SL-------------DDGT--TLSADAIVIATGSRARTM  114 (410)
T ss_dssp             EEEETTTTEE---EE-------------TTSC--EEECSEEEECCCEEECCC
T ss_pred             EEEECCCCEE---EE-------------CCCC--EEECCEEEEccCCcccCC
Confidence            8886533322   22             2333  689999999999987653

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=98.39  E-value=3.3e-06  Score=70.84  Aligned_cols=34  Identities=26%  Similarity=0.388  Sum_probs=29.9

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCc-eEEEEEeec
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGAN-KVLVVFRKG  103 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~-~V~lv~r~~  103 (183)
                      .+|+|||||..|+.+|..|++.|.. +|+++++++
T Consensus         7 ~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~~   41 (447)
T 2gv8_A            7 RKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRG   41 (447)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSS
T ss_pred             CEEEEECccHHHHHHHHHHHhcCCCCCeEEEecCC
Confidence            5699999999999999999999851 599999864

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=98.38  E-value=4e-06  Score=68.65  Aligned_cols=91  Identities=16%  Similarity=0.097  Sum_probs=64.4

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCCcCC-----------------------------------------
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIR-----------------------------------------  108 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~~~~-----------------------------------------  108 (183)
                      .+|+|||||..|+.+|..|++.|. +|+|+++++.....                                         
T Consensus        12 ~dVvIVGaG~aGl~~A~~L~~~G~-~v~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~g~~   90 (379)
T 3alj_A           12 RRAEVAGGGFAGLTAAIALKQNGW-DVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDVLQGSHTPPTYETWMHNKS   90 (379)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSSCCCCSSEEEEEHHHHHHHHHTTCHHHHHTTCBCCSCEEEEETTEE
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCC-CEEEEecCCCCCCCCceEEeCccHHHHHHHcCCHHHHHhhCCCccceEEEeCCce
Confidence            469999999999999999999997 79999986432100                                         


Q ss_pred             -------CC------HHH-----HHHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCE
Q psy16200        109 -------AV------PEE-----VQLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANY  170 (183)
Q Consensus       109 -------~~------~~~-----~~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~  170 (183)
                             ..      ...     .+.+.+.|+++++++.+.++.. ++   .+++             .+|+  ++.+|.
T Consensus        91 ~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~-~~---~v~~-------------~~g~--~~~ad~  151 (379)
T 3alj_A           91 VSKETFNGLPWRIMTRSHLHDALVNRARALGVDISVNSEAVAADP-VG---RLTL-------------QTGE--VLEADL  151 (379)
T ss_dssp             EEEECGGGCCEEEEEHHHHHHHHHHHHHHTTCEEESSCCEEEEET-TT---EEEE-------------TTSC--EEECSE
T ss_pred             eeeccCCCCceEEECHHHHHHHHHHHHHhcCCEEEeCCEEEEEEe-CC---EEEE-------------CCCC--EEEcCE
Confidence                   00      011     1234556899999999888875 33   2333             2343  689999


Q ss_pred             EEEccccccc
Q psy16200        171 IISAFGSTLL  180 (183)
Q Consensus       171 Vi~a~G~~p~  180 (183)
                      ||.|.|..+.
T Consensus       152 vV~AdG~~s~  161 (379)
T 3alj_A          152 IVGADGVGSK  161 (379)
T ss_dssp             EEECCCTTCH
T ss_pred             EEECCCccHH
Confidence            9999998753

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=98.38  E-value=1.8e-06  Score=72.58  Aligned_cols=93  Identities=17%  Similarity=0.233  Sum_probs=66.2

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCCc-------------------------CCCC---------------
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTN-------------------------IRAV---------------  110 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~~-------------------------~~~~---------------  110 (183)
                      +|+|||||..|+-+|..|++.|. +|+|+++.+...                         .+..               
T Consensus        28 dVvIIGgG~aGl~aA~~la~~G~-~V~llEk~~~~g~~~~~sg~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (447)
T 2i0z_A           28 DVIVIGGGPSGLMAAIGAAEEGA-NVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFSIFNNED  106 (447)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHHHSCHHH
T ss_pred             CEEEECCcHHHHHHHHHHHHCCC-CEEEEECCCCCCceeEEeCCCceeccCcccHHHHHHHhccChHHHHHHHHhcCHHH
Confidence            59999999999999999999997 699999754210                         0000               


Q ss_pred             --------------------------HHH-----HHHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecC
Q psy16200        111 --------------------------PEE-----VQLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVED  159 (183)
Q Consensus       111 --------------------------~~~-----~~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~  159 (183)
                                                ...     ...+.+.||++++++.+.++..+++++.++++             .
T Consensus       107 ~~~~~~~~G~~~~~~~~g~~~p~~~~~~~l~~~L~~~~~~~GV~i~~~~~V~~i~~~~~~v~~V~~-------------~  173 (447)
T 2i0z_A          107 IITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYENGQTKAVIL-------------Q  173 (447)
T ss_dssp             HHHHHHHTTCCEEECGGGEEEETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEE-------------T
T ss_pred             HHHHHHhcCCceEEeeCCEEECCCCCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEecCCcEEEEEE-------------C
Confidence                                      001     11234568999999999988755566554543             2


Q ss_pred             CCceEEEECCEEEEcccccc
Q psy16200        160 EEQRIKLKANYIISAFGSTL  179 (183)
Q Consensus       160 ~g~~~~i~~D~Vi~a~G~~p  179 (183)
                      +|+  ++.||.||+|+|..+
T Consensus       174 ~G~--~i~Ad~VVlAtGg~s  191 (447)
T 2i0z_A          174 TGE--VLETNHVVIAVGGKS  191 (447)
T ss_dssp             TCC--EEECSCEEECCCCSS
T ss_pred             CCC--EEECCEEEECCCCCc
Confidence            333  589999999999876

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=98.38  E-value=3.1e-06  Score=67.24  Aligned_cols=31  Identities=16%  Similarity=0.270  Sum_probs=28.4

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      .|+|||||..|+.+|.+|++.|. +|+|+++.
T Consensus         8 DVvIIGaGpAGlsAA~~lar~g~-~v~lie~~   38 (304)
T 4fk1_A            8 DCAVIGAGPAGLNASLVLGRARK-QIALFDNN   38 (304)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-CEEEEECS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC-CEEEEeCC
Confidence            39999999999999999999996 69999974

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=98.37  E-value=1.5e-06  Score=72.40  Aligned_cols=32  Identities=28%  Similarity=0.423  Sum_probs=29.5

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      +|+|||||..|+.+|..|++.|. +|+|+++.+
T Consensus         6 dViIIGgG~aGl~aA~~la~~G~-~V~vlEk~~   37 (401)
T 2gqf_A            6 ENIIIGAGAAGLFCAAQLAKLGK-SVTVFDNGK   37 (401)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTC-CEEEECSSS
T ss_pred             CEEEECCcHHHHHHHHHHHhCCC-CEEEEeCCC
Confidence            49999999999999999999997 699999864

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=98.37  E-value=1.6e-06  Score=72.00  Aligned_cols=94  Identities=19%  Similarity=0.205  Sum_probs=65.8

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCc-eEEEEEeecCCcC-----C-C------CHH-----HHHHHHHcCcEEEeCCcce
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGAN-KVLVVFRKGCTNI-----R-A------VPE-----EVQLAWEEKCEFLPFMSPV  131 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~-~V~lv~r~~~~~~-----~-~------~~~-----~~~~~~~~gv~~~~~~~~~  131 (183)
                      .+|+|||||..|+.+|..|++.|.+ +|+++++++....     . .      ...     ....+.+.+++++.++.+.
T Consensus        10 ~~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~   89 (415)
T 3lxd_A           10 ADVVIVGAGHGGAQAAIALRQNGFEGRVLVIGREPEIPYERPPLSKEYLAREKTFERICIRPAQFWEDKAVEMKLGAEVV   89 (415)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCSCEEEEESSSSCCBCSGGGGTTTTTTSSCSGGGBSSCHHHHHHTTEEEEETCCEE
T ss_pred             CcEEEECChHHHHHHHHHHHccCcCCCEEEEecCCCCCcCcccCCHHHHcCCCCHHHhccCCHHHHHHCCcEEEeCCEEE
Confidence            4699999999999999999999852 3999998653110     0 0      001     1233467899999998888


Q ss_pred             EEEccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccccccC
Q psy16200        132 QVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLD  181 (183)
Q Consensus       132 ~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~  181 (183)
                      ++..+...+   ++             .+++  .+.+|.+|+|+|..|..
T Consensus        90 ~id~~~~~v---~~-------------~~g~--~~~~d~lvlAtG~~~~~  121 (415)
T 3lxd_A           90 SLDPAAHTV---KL-------------GDGS--AIEYGKLIWATGGDPRR  121 (415)
T ss_dssp             EEETTTTEE---EE-------------TTSC--EEEEEEEEECCCEECCC
T ss_pred             EEECCCCEE---EE-------------CCCC--EEEeeEEEEccCCccCC
Confidence            886533322   22             2332  68899999999988764

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=98.37  E-value=3.1e-06  Score=67.71  Aligned_cols=93  Identities=17%  Similarity=0.169  Sum_probs=63.2

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEe----ecCC-----------cCCCC-----HHHH-----HHHHHcCcEE
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFR----KGCT-----------NIRAV-----PEEV-----QLAWEEKCEF  124 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r----~~~~-----------~~~~~-----~~~~-----~~~~~~gv~~  124 (183)
                      .+|+|||||..|+.+|..|++.|. +|+++++    ....           ..+..     ..++     ..+.+.|+++
T Consensus         9 ~~vvIIG~G~aGl~~A~~l~~~g~-~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~   87 (333)
T 1vdc_A            9 TRLCIVGSGPAAHTAAIYAARAEL-KPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVELTDKFRKQSERFGTTI   87 (333)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTC-CCEEECCSSBTTBCTTCGGGGCSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCEE
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCC-eEEEEeccCccccCCCceeeeccccccCCCCccCCCHHHHHHHHHHHHHHCCCEE
Confidence            359999999999999999999997 6999997    1110           01111     1121     2345678999


Q ss_pred             EeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccccccC
Q psy16200        125 LPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLD  181 (183)
Q Consensus       125 ~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~  181 (183)
                      +.+. +.++..+++.++ ++              .++  .++.+|.||+|+|..|..
T Consensus        88 ~~~~-v~~i~~~~~~~~-v~--------------~~~--~~~~~~~vv~A~G~~~~~  126 (333)
T 1vdc_A           88 FTET-VTKVDFSSKPFK-LF--------------TDS--KAILADAVILAIGAVAKR  126 (333)
T ss_dssp             ECCC-CCEEECSSSSEE-EE--------------CSS--EEEEEEEEEECCCEEECC
T ss_pred             EEeE-EEEEEEcCCEEE-EE--------------ECC--cEEEcCEEEECCCCCcCC
Confidence            8886 777764334332 21              122  468999999999998764

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=98.36  E-value=4.9e-06  Score=65.89  Aligned_cols=94  Identities=14%  Similarity=0.165  Sum_probs=62.2

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCC----------cCCC-----CHHHH-----HHHHHcCcEEEeCCcc
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCT----------NIRA-----VPEEV-----QLAWEEKCEFLPFMSP  130 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~----------~~~~-----~~~~~-----~~~~~~gv~~~~~~~~  130 (183)
                      +|+|||||..|+.+|..|++.|..+|+++++....          ..+.     ...++     ..+.+.|+++++ ..+
T Consensus         3 dvvIIG~G~aGl~aA~~l~~~g~~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~-~~v   81 (311)
T 2q0l_A            3 DCAIIGGGPAGLSAGLYATRGGVKNAVLFEKGMPGGQITGSSEIENYPGVKEVVSGLDFMQPWQEQCFRFGLKHEM-TAV   81 (311)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSSEEEECSSSTTCGGGGCSCBCCSTTCCSCBCHHHHHHHHHHHHHTTSCEEEC-SCE
T ss_pred             eEEEECccHHHHHHHHHHHHCCCCcEEEEcCCCCCcccccccccccCCCCcccCCHHHHHHHHHHHHHHcCCEEEE-EEE
Confidence            59999999999999999999986259999985210          0111     11222     123456899887 667


Q ss_pred             eEEEccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccccccC
Q psy16200        131 VQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLD  181 (183)
Q Consensus       131 ~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~  181 (183)
                      .++..+++.++ +++             .++  .++.+|.||+|+|..|..
T Consensus        82 ~~i~~~~~~~~-v~~-------------~~g--~~~~~~~vv~AtG~~~~~  116 (311)
T 2q0l_A           82 QRVSKKDSHFV-ILA-------------EDG--KTFEAKSVIIATGGSPKR  116 (311)
T ss_dssp             EEEEEETTEEE-EEE-------------TTS--CEEEEEEEEECCCEEECC
T ss_pred             EEEEEcCCEEE-EEE-------------cCC--CEEECCEEEECCCCCCCC
Confidence            77754333222 222             223  268999999999988764

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=98.35  E-value=2.6e-06  Score=67.24  Aligned_cols=94  Identities=17%  Similarity=0.159  Sum_probs=61.5

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEE-EEeecC-------C---cCCCC-----HHHH-----HHHHHcCcEEEeCC
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLV-VFRKGC-------T---NIRAV-----PEEV-----QLAWEEKCEFLPFM  128 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~l-v~r~~~-------~---~~~~~-----~~~~-----~~~~~~gv~~~~~~  128 (183)
                      .+|+|||||..|+.+|..|++.|. +|++ +++...       .   ..|..     ..++     ..+.+.+++++++ 
T Consensus         5 ~~vvIIG~G~aGl~aA~~l~~~g~-~v~li~e~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-   82 (315)
T 3r9u_A            5 LDVAIIGGGPAGLSAGLYATRGGL-KNVVMFEKGMPGGQITSSSEIENYPGVAQVMDGISFMAPWSEQCMRFGLKHEMV-   82 (315)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHTC-SCEEEECSSSTTGGGGGCSCBCCSTTCCSCBCHHHHHHHHHHHHTTTCCEEECC-
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCC-CeEEEEeCCCCCceeeeeceeccCCCCCCCCCHHHHHHHHHHHHHHcCcEEEEE-
Confidence            469999999999999999999997 6999 886311       0   01111     1222     2234568888877 


Q ss_pred             cceEEEccC--CcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccccccCC
Q psy16200        129 SPVQVDVKD--NKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDN  182 (183)
Q Consensus       129 ~~~~i~~~~--~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~  182 (183)
                      .+.++ .++  +.+. +++             .++.  ++.+|.||+|+|..|+..
T Consensus        83 ~v~~i-~~~~~~~~~-v~~-------------~~~~--~~~~d~lvlAtG~~~~~~  121 (315)
T 3r9u_A           83 GVEQI-LKNSDGSFT-IKL-------------EGGK--TELAKAVIVCTGSAPKKA  121 (315)
T ss_dssp             CEEEE-EECTTSCEE-EEE-------------TTSC--EEEEEEEEECCCEEECCC
T ss_pred             EEEEE-ecCCCCcEE-EEE-------------ecCC--EEEeCEEEEeeCCCCCCC
Confidence            66666 322  2332 112             2333  789999999999988653

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=98.35  E-value=3e-06  Score=68.62  Aligned_cols=92  Identities=18%  Similarity=0.217  Sum_probs=62.4

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeecC------------CcCC-----------------------------C
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC------------TNIR-----------------------------A  109 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~------------~~~~-----------------------------~  109 (183)
                      +|+|||||..|+.+|..|++.|..+|+|++++..            ...+                             .
T Consensus         6 ~vvIIGaG~aGl~aA~~l~~~g~~~v~lie~~~~Gg~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~   85 (369)
T 3d1c_A            6 KVAIIGAGAAGIGMAITLKDFGITDVIILEKGTVGHSFKHWPKSTRTITPSFTSNGFGMPDMNAISMDTSPAFTFNEEHI   85 (369)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSTTHHHHTSCTTCBCSSCCCCCGGGTCCCTTCSSTTCCHHHHHCCSSC
T ss_pred             cEEEECcCHHHHHHHHHHHHcCCCcEEEEecCCCCCccccCcccccccCcchhcccCCchhhhhccccccccccccccCC
Confidence            5999999999999999999998525999998640            0000                             0


Q ss_pred             CHHHH-----HHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccccc
Q psy16200        110 VPEEV-----QLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTL  179 (183)
Q Consensus       110 ~~~~~-----~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p  179 (183)
                      ...++     ..+.+.|+++++++.+.++..+++..+ ++.             .++   ++.+|.||+|+|..+
T Consensus        86 ~~~~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~~~~~-v~~-------------~~g---~~~~d~vVlAtG~~~  143 (369)
T 3d1c_A           86 SGETYAEYLQVVANHYELNIFENTVVTNISADDAYYT-IAT-------------TTE---TYHADYIFVATGDYN  143 (369)
T ss_dssp             BHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSSEE-EEE-------------SSC---CEEEEEEEECCCSTT
T ss_pred             CHHHHHHHHHHHHHHcCCeEEeCCEEEEEEECCCeEE-EEe-------------CCC---EEEeCEEEECCCCCC
Confidence            01111     123567899999988888865433332 221             122   478999999999864

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=98.35  E-value=3.6e-06  Score=73.50  Aligned_cols=97  Identities=16%  Similarity=0.200  Sum_probs=68.6

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCCcC------------------------------------------
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNI------------------------------------------  107 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~~~------------------------------------------  107 (183)
                      .+|+|||||..|+-+|..|++.|. +|+|+++.+....                                          
T Consensus        24 ~DVvIVGgG~AGl~aA~~Lar~G~-~V~LiEr~~~~~~~~G~~l~p~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~  102 (591)
T 3i3l_A           24 SKVAIIGGGPAGSVAGLTLHKLGH-DVTIYERSAFPRYRVGESLLPGTMSILNRLGLQEKIDAQNYVKKPSATFLWGQDQ  102 (591)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCSSCCCCCCBCCHHHHHHHHHTTCHHHHHHHCCEEECEEEEECSSSC
T ss_pred             CCEEEECcCHHHHHHHHHHHcCCC-CEEEEcCCCCCCCceeeeECHHHHHHHHHcCCcHHHHhcCCcccCCcEEEecCCC
Confidence            469999999999999999999997 7999998621000                                          


Q ss_pred             -----------------C----CCHHH-----HHHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCC
Q psy16200        108 -----------------R----AVPEE-----VQLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEE  161 (183)
Q Consensus       108 -----------------~----~~~~~-----~~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g  161 (183)
                                       +    .....     .+.+.+.|+++++++.+.++..+++.+.++++.            .+|
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~V~~v~~~~g~~~~V~~~------------~~G  170 (591)
T 3i3l_A          103 APWTFSFAAPKVAPWVFDHAVQVKREEFDKLLLDEARSRGITVHEETPVTDVDLSDPDRVVLTVR------------RGG  170 (591)
T ss_dssp             CCEEEECCCC--CTTCCSCEEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEECCSTTCEEEEEE------------ETT
T ss_pred             ccceeecccccccccccCeeEEEcHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCEEEEEEe------------cCC
Confidence                             0    00011     123355789999999988887544444445553            145


Q ss_pred             ceEEEECCEEEEcccccc
Q psy16200        162 QRIKLKANYIISAFGSTL  179 (183)
Q Consensus       162 ~~~~i~~D~Vi~a~G~~p  179 (183)
                      +..++.||.||.|.|...
T Consensus       171 ~~~~i~AdlVV~AdG~~S  188 (591)
T 3i3l_A          171 ESVTVESDFVIDAGGSGG  188 (591)
T ss_dssp             EEEEEEESEEEECCGGGC
T ss_pred             ceEEEEcCEEEECCCCcc
Confidence            557899999999999864

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=98.34  E-value=5.2e-06  Score=67.29  Aligned_cols=92  Identities=9%  Similarity=0.041  Sum_probs=63.3

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCC--------------cCCCC----HHHH-----HHHHHcCcEEEe
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCT--------------NIRAV----PEEV-----QLAWEEKCEFLP  126 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~--------------~~~~~----~~~~-----~~~~~~gv~~~~  126 (183)
                      .+|+|||||..|+.+|..|++.|. +|+|+++++..              ..+..    ..++     ..+.+.++++++
T Consensus        15 ~dvvIIG~G~aGl~aA~~l~~~g~-~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~   93 (360)
T 3ab1_A           15 RDLTIIGGGPTGIFAAFQCGMNNI-SCRIIESMPQLGGQLAALYPEKHIYDVAGFPEVPAIDLVESLWAQAERYNPDVVL   93 (360)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSSSCHHHHHTCTTSEECCSTTCSSEEHHHHHHHHHHHHHTTCCEEEC
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCC-CEEEEecCCCCCCcccccCCCcccccCCCCCCCCHHHHHHHHHHHHHHhCCEEEc
Confidence            359999999999999999999997 69999986431              01111    1222     233456899998


Q ss_pred             CCcceEEEccCC-cEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEccccc
Q psy16200        127 FMSPVQVDVKDN-KIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGST  178 (183)
Q Consensus       127 ~~~~~~i~~~~~-~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~  178 (183)
                      +..+.++..+++ .++ +++             .++  .++.+|.||+|+|..
T Consensus        94 ~~~v~~i~~~~~~~~~-v~~-------------~~g--~~~~~~~li~AtG~~  130 (360)
T 3ab1_A           94 NETVTKYTKLDDGTFE-TRT-------------NTG--NVYRSRAVLIAAGLG  130 (360)
T ss_dssp             SCCEEEEEECTTSCEE-EEE-------------TTS--CEEEEEEEEECCTTC
T ss_pred             CCEEEEEEECCCceEE-EEE-------------CCC--cEEEeeEEEEccCCC
Confidence            888888875332 332 222             223  368999999999983

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=98.33  E-value=2.9e-06  Score=72.62  Aligned_cols=109  Identities=12%  Similarity=0.133  Sum_probs=64.8

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCCcC-CC---------CHHH----HHHH---HHcCcEEEeCCcceEE
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNI-RA---------VPEE----VQLA---WEEKCEFLPFMSPVQV  133 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~~~-~~---------~~~~----~~~~---~~~gv~~~~~~~~~~i  133 (183)
                      ||||||||+.|+.+|..|.+.+. +|+||++++.... |.         ....    +...   ...++.|+.. .+++|
T Consensus        44 rVVIIGgG~AGl~~A~~L~~~~~-~VtLId~~~~~~~~PlL~~va~G~l~~~~i~~p~~~~~~~~~~~v~~~~~-~v~~I  121 (502)
T 4g6h_A           44 NVLILGSGWGAISFLKHIDTKKY-NVSIISPRSYFLFTPLLPSAPVGTVDEKSIIEPIVNFALKKKGNVTYYEA-EATSI  121 (502)
T ss_dssp             EEEEECSSHHHHHHHHHSCTTTC-EEEEEESSSEEECGGGGGGTTTTSSCGGGGEEEHHHHHTTCSSCEEEEEE-EEEEE
T ss_pred             CEEEECCcHHHHHHHHHhhhCCC-cEEEECCCCCcccccchhHHhhccccHHHhhhhHHHHHHhhcCCeEEEEE-EEEEE
Confidence            59999999999999999988887 7999998764211 11         0111    1221   2346777654 45566


Q ss_pred             EccCCcEEEEEE-EEee-e-cCCCCeecCCCceEEEECCEEEEcccccccCC
Q psy16200        134 DVKDNKIAGMQF-NRTE-Q-NEKGEWVEDEEQRIKLKANYIISAFGSTLLDN  182 (183)
Q Consensus       134 ~~~~~~v~~v~~-~~~~-~-~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~  182 (183)
                      ..+...|+ ++. .... . ..........+...+++.|.+|+|+|..|+..
T Consensus       122 D~~~k~V~-l~~~~~~~~~~~~~~~~~~~~~~~~~i~YD~LViAtGs~~~~~  172 (502)
T 4g6h_A          122 NPDRNTVT-IKSLSAVSQLYQPENHLGLHQAEPAEIKYDYLISAVGAEPNTF  172 (502)
T ss_dssp             EGGGTEEE-EEEEEEEEECSSSCCCCCCCTTCCEEEECSEEEECCCCEECCT
T ss_pred             EhhhCEEE-EeecccceeecccccccccccCCceEEeCCEEEEcCCcccccC
Confidence            54434443 211 1100 0 01111111234567899999999999998753

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=98.33  E-value=1.6e-06  Score=71.27  Aligned_cols=96  Identities=18%  Similarity=0.242  Sum_probs=66.3

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCC----cCC--------------------------------------
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCT----NIR--------------------------------------  108 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~----~~~--------------------------------------  108 (183)
                      +|+|||||..|+.+|..|++.|. +|+|+++++..    ...                                      
T Consensus         4 dV~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~~~~~~~~~~~g~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~   82 (394)
T 1k0i_A            4 QVAIIGAGPSGLLLGQLLHKAGI-DNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARDGLVHEGVEIAFAGQ   82 (394)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTC-CEEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCHHHHHHCEEESCEEEEETTE
T ss_pred             cEEEECCCHHHHHHHHHHHHCCC-CEEEEeCCCCCcccCCCceEeECHHHHHHHHHcCCcHHHHhcCCccceEEEEECCc
Confidence            49999999999999999999997 69999986520    000                                      


Q ss_pred             -----------C------CHHHH-----HHHHHcCcEEEeCCcceEEEccC-CcEEEEEEEEeeecCCCCeecCCCceEE
Q psy16200        109 -----------A------VPEEV-----QLAWEEKCEFLPFMSPVQVDVKD-NKIAGMQFNRTEQNEKGEWVEDEEQRIK  165 (183)
Q Consensus       109 -----------~------~~~~~-----~~~~~~gv~~~~~~~~~~i~~~~-~~v~~v~~~~~~~~~~~~~~~~~g~~~~  165 (183)
                                 .      ....+     +.+.+.|+++++++.+.++..++ +.+. +++.            .+|+..+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~i~~~~~v~~i~~~~~~~~~-v~~~------------~~g~~~~  149 (394)
T 1k0i_A           83 RRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPY-VTFE------------RDGERLR  149 (394)
T ss_dssp             EEEECHHHHHTSCCEEECCHHHHHHHHHHHHHHTTCEEESSCEEEEEECTTSSSCE-EEEE------------ETTEEEE
T ss_pred             eEEeccccccCCCceEEechHHHHHHHHHHHHhcCCeEEeceeEEEEEEecCCceE-EEEe------------cCCcEEE
Confidence                       0      01111     12345688999999888887532 3333 4442            2455557


Q ss_pred             EECCEEEEccccccc
Q psy16200        166 LKANYIISAFGSTLL  180 (183)
Q Consensus       166 i~~D~Vi~a~G~~p~  180 (183)
                      +.+|.||.|.|....
T Consensus       150 ~~a~~vV~AdG~~S~  164 (394)
T 1k0i_A          150 LDCDYIAGCDGFHGI  164 (394)
T ss_dssp             EECSEEEECCCTTCS
T ss_pred             EEeCEEEECCCCCcH
Confidence            999999999998654

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=98.32  E-value=6.1e-06  Score=66.46  Aligned_cols=32  Identities=31%  Similarity=0.361  Sum_probs=29.6

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      +|+|||||..|+-+|..|++.|. +|+|+++.+
T Consensus         6 dvvIIG~G~~Gl~~A~~La~~G~-~V~vlE~~~   37 (369)
T 3dme_A            6 DCIVIGAGVVGLAIARALAAGGH-EVLVAEAAE   37 (369)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-CEEEECSSS
T ss_pred             CEEEECCCHHHHHHHHHHHhCCC-eEEEEeCCC
Confidence            59999999999999999999997 699999874

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=98.30  E-value=3.5e-06  Score=70.73  Aligned_cols=101  Identities=11%  Similarity=0.086  Sum_probs=66.4

Q ss_pred             eEEEEcCChhHHHHHHHHHHcC-----CceEEEEEeecCCc-----------C-------------CC------------
Q psy16200         71 TVIVLGAGDTAFDCATSALRCG-----ANKVLVVFRKGCTN-----------I-------------RA------------  109 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G-----~~~V~lv~r~~~~~-----------~-------------~~------------  109 (183)
                      +|+|||||..|+.+|..|++.|     . +|+++++++...           +             |.            
T Consensus        32 dVvIIGaG~aGl~aA~~L~~~g~~~~~~-~v~liE~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~l~~~  110 (463)
T 3s5w_A           32 DLIGVGFGPSNIALAIALQERAQAQGAL-EVLFLDKQGDYRWHGNTLVSQSELQISFLKDLVSLRNPTSPYSFVNYLHKH  110 (463)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHHHHHCCC-CEEEEESCSSCCSSGGGCCSSCBCSSCTTSSSSTTTCTTCTTSHHHHHHHT
T ss_pred             CEEEECCCHHHHHHHHHHHhcccccCcc-cEEEEecCCCCCCcCCCCCCCCcCCcchhhccccccCCCCCCChhHhhhhc
Confidence            5999999999999999999998     7 699999876210           0             00            


Q ss_pred             --------------CHHHHH-H----HHHcCcEEEeCCcceEEEcc--CCcEEEEEEEEeeecCCCCeecCCCceEEEEC
Q psy16200        110 --------------VPEEVQ-L----AWEEKCEFLPFMSPVQVDVK--DNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKA  168 (183)
Q Consensus       110 --------------~~~~~~-~----~~~~gv~~~~~~~~~~i~~~--~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~  168 (183)
                                    ...++. +    +...++.+++++.+.++..+  +++...+++...         ...|+..++.+
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~~~~V~~~---------~g~g~~~~~~~  181 (463)
T 3s5w_A          111 DRLVDFINLGTFYPCRMEFNDYLRWVASHFQEQSRYGEEVLRIEPMLSAGQVEALRVISR---------NADGEELVRTT  181 (463)
T ss_dssp             TCHHHHHHHCCSCCBHHHHHHHHHHHHTTCTTTEEESEEEEEEEEEEETTEEEEEEEEEE---------ETTSCEEEEEE
T ss_pred             CceeecccccCCCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEecCCCceEEEEEEEe---------cCCCceEEEEe
Confidence                          011111 1    22347889999888887642  233322222210         12355568999


Q ss_pred             CEEEEcccccccC
Q psy16200        169 NYIISAFGSTLLD  181 (183)
Q Consensus       169 D~Vi~a~G~~p~~  181 (183)
                      |.||+|+|..|..
T Consensus       182 d~lVlAtG~~p~~  194 (463)
T 3s5w_A          182 RALVVSPGGTPRI  194 (463)
T ss_dssp             SEEEECCCCEECC
T ss_pred             CEEEECCCCCCCC
Confidence            9999999998864

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=98.29  E-value=8.3e-06  Score=67.21  Aligned_cols=34  Identities=21%  Similarity=0.177  Sum_probs=30.8

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC  104 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~  104 (183)
                      .+|+|||||..|+.+|..|++.|. +|+|+++++.
T Consensus         6 ~~V~IVGaG~aGl~~A~~L~~~G~-~v~v~E~~~~   39 (397)
T 2vou_A            6 DRIAVVGGSISGLTAALMLRDAGV-DVDVYERSPQ   39 (397)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSS
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCC-CEEEEecCCC
Confidence            469999999999999999999997 7999998754

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=98.29  E-value=4.5e-06  Score=70.82  Aligned_cols=99  Identities=11%  Similarity=0.129  Sum_probs=66.7

Q ss_pred             ceEEEEcCChhHHHHHHHHHHc--CCceEEEEEeecCCc-CCC-----------CHHH-----HHHHHH-cCcEEEeCCc
Q psy16200         70 GTVIVLGAGDTAFDCATSALRC--GANKVLVVFRKGCTN-IRA-----------VPEE-----VQLAWE-EKCEFLPFMS  129 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~--G~~~V~lv~r~~~~~-~~~-----------~~~~-----~~~~~~-~gv~~~~~~~  129 (183)
                      .+|+|||||..|+.+|..|++.  |. +|+|+++++... .+.           ....     ...+.+ .|++++.+..
T Consensus        37 ~dvvIIG~G~aGl~aA~~l~~~~~g~-~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gv~~~~~~~  115 (480)
T 3cgb_A           37 MNYVIIGGDAAGMSAAMQIVRNDENA-NVVTLEKGEIYSYAQCGLPYVISGAIASTEKLIARNVKTFRDKYGIDAKVRHE  115 (480)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTC-EEEEECSSSCCSBCGGGHHHHHTTSSSCGGGGBSSCHHHHHHTTCCEEESSEE
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCcCC-cEEEEECCCCCCCCCCCcchhhcCCcCCHHHhhhcCHHHHHhhcCCEEEeCCE
Confidence            4699999999999999999987  76 799999865320 000           0111     122323 4899988888


Q ss_pred             ceEEEccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccccccCC
Q psy16200        130 PVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDN  182 (183)
Q Consensus       130 ~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~  182 (183)
                      +..+..+...+.   +..          ..+|+..++.+|.||+|+|..|...
T Consensus       116 v~~i~~~~~~v~---v~~----------~~~g~~~~~~~d~lviAtG~~p~~p  155 (480)
T 3cgb_A          116 VTKVDTEKKIVY---AEH----------TKTKDVFEFSYDRLLIATGVRPVMP  155 (480)
T ss_dssp             EEEEETTTTEEE---EEE----------TTTCCEEEEECSEEEECCCEEECCC
T ss_pred             EEEEECCCCEEE---EEE----------cCCCceEEEEcCEEEECCCCcccCC
Confidence            887765444332   321          0134445799999999999988643

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=98.28  E-value=6.6e-06  Score=65.10  Aligned_cols=95  Identities=16%  Similarity=0.129  Sum_probs=62.7

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCCc---------C---CC-CHHHH-----HHHHHcCcEEEeCCcceE
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTN---------I---RA-VPEEV-----QLAWEEKCEFLPFMSPVQ  132 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~~---------~---~~-~~~~~-----~~~~~~gv~~~~~~~~~~  132 (183)
                      +|+|||||..|+.+|..|++.|. +|++++++....         .   +. ...++     ..+.+.|++++.++.+..
T Consensus         3 dvvIIG~G~aGl~aA~~l~~~g~-~v~li~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~   81 (310)
T 1fl2_A            3 DVLIVGSGPAGAAAAIYSARKGI-RTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALKVHVDEYDVDVIDSQSASK   81 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTC-CEEEECSSTTGGGGGCCEECCBTTBSSEEHHHHHHHHHHHHHTSCEEEECSCCEEE
T ss_pred             CEEEECcCHHHHHHHHHHHHCCC-cEEEEeCCCCceeccccccccccCcCCCCHHHHHHHHHHHHHHcCCeEEccCEEEE
Confidence            49999999999999999999997 699997532100         0   11 11122     223557899999988888


Q ss_pred             EEccC--CcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccccccC
Q psy16200        133 VDVKD--NKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLD  181 (183)
Q Consensus       133 i~~~~--~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~  181 (183)
                      +..+.  +....+++             .++  .++.+|.||+|+|..|..
T Consensus        82 i~~~~~~~~~~~v~~-------------~~g--~~~~~~~lv~AtG~~~~~  117 (310)
T 1fl2_A           82 LIPAAVEGGLHQIET-------------ASG--AVLKARSIIVATGAKWRN  117 (310)
T ss_dssp             EECCSSTTCCEEEEE-------------TTS--CEEEEEEEEECCCEEECC
T ss_pred             EEecccCCceEEEEE-------------CCC--CEEEeCEEEECcCCCcCC
Confidence            85321  11111322             223  268899999999998754

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=98.28  E-value=5.8e-06  Score=65.83  Aligned_cols=93  Identities=20%  Similarity=0.230  Sum_probs=61.8

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCC----------cCCC----CHHHH-----HHHHHcCcEEEeCCcc
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCT----------NIRA----VPEEV-----QLAWEEKCEFLPFMSP  130 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~----------~~~~----~~~~~-----~~~~~~gv~~~~~~~~  130 (183)
                      .+|+|||||..|+.+|..|++.|. +|+++++....          ..+.    ...++     ..+.+.|++++. ..+
T Consensus        17 ~dvvIIG~G~aGl~aA~~l~~~g~-~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~v   94 (319)
T 3cty_A           17 FDVVIVGAGAAGFSAAVYAARSGF-SVAILDKAVAGGLTAEAPLVENYLGFKSIVGSELAKLFADHAANYAKIREG-VEV   94 (319)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTC-CEEEEESSSTTGGGGGCSCBCCBTTBSSBCHHHHHHHHHHHHHTTSEEEET-CCE
T ss_pred             CcEEEECcCHHHHHHHHHHHhCCC-cEEEEeCCCCCccccccchhhhcCCCcccCHHHHHHHHHHHHHHcCCEEEE-eeE
Confidence            459999999999999999999997 69999984210          0121    11221     223556888877 566


Q ss_pred             eEEEccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccccccC
Q psy16200        131 VQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLD  181 (183)
Q Consensus       131 ~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~  181 (183)
                      .++..+++.++ ++.              ++.  ++.+|.||+|+|..|..
T Consensus        95 ~~i~~~~~~~~-v~~--------------~~~--~~~~~~li~AtG~~~~~  128 (319)
T 3cty_A           95 RSIKKTQGGFD-IET--------------NDD--TYHAKYVIITTGTTHKH  128 (319)
T ss_dssp             EEEEEETTEEE-EEE--------------SSS--EEEEEEEEECCCEEECC
T ss_pred             EEEEEeCCEEE-EEE--------------CCC--EEEeCEEEECCCCCccc
Confidence            66654333332 211              222  58899999999988754

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=98.27  E-value=2.2e-06  Score=71.23  Aligned_cols=94  Identities=16%  Similarity=0.197  Sum_probs=61.8

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCc-eEEEEEeecCCcC--CCCHH-HHH----------HHHHcCcEEEeCCcceEEEc
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGAN-KVLVVFRKGCTNI--RAVPE-EVQ----------LAWEEKCEFLPFMSPVQVDV  135 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~-~V~lv~r~~~~~~--~~~~~-~~~----------~~~~~gv~~~~~~~~~~i~~  135 (183)
                      .+|+|||||..|+.+|..|++.|.+ +|+++++++....  +.... .+.          .+.+.|++++.++.+..+..
T Consensus         8 ~~vvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~   87 (408)
T 2gqw_A            8 APVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRLDCKRAPEVEWLLGVTAQSFDP   87 (408)
T ss_dssp             SSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCBCSGGGGTHHHHHCCGGGSBCCCTTSCSCEEEETCCEEEEET
T ss_pred             CcEEEECChHHHHHHHHHHHccCCCCeEEEEECCCCCcccCCCCCHHHhCCCchhhhhHHHHHHCCCEEEcCCEEEEEEC
Confidence            4699999999999999999999853 5999998754211  01111 111          12244677777776666653


Q ss_pred             cCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccccccC
Q psy16200        136 KDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLD  181 (183)
Q Consensus       136 ~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~  181 (183)
                      +...|   ++             .+++  ++.+|.||+|+|..|..
T Consensus        88 ~~~~v---~~-------------~~g~--~~~~d~lviAtG~~~~~  115 (408)
T 2gqw_A           88 QAHTV---AL-------------SDGR--TLPYGTLVLATGAAPRA  115 (408)
T ss_dssp             TTTEE---EE-------------TTSC--EEECSEEEECCCEEECC
T ss_pred             CCCEE---EE-------------CCCC--EEECCEEEECCCCCCCC
Confidence            22222   22             1232  68999999999998865

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=98.26  E-value=9.2e-06  Score=64.82  Aligned_cols=94  Identities=16%  Similarity=0.061  Sum_probs=62.1

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecC----------CcCCC-----CHHHH-----HHHHHcCcEEEeCCc
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC----------TNIRA-----VPEEV-----QLAWEEKCEFLPFMS  129 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~----------~~~~~-----~~~~~-----~~~~~~gv~~~~~~~  129 (183)
                      .+|+|||||..|+.+|..|++.|. +|++++++..          ...+.     ...++     ..+.+.|++++. ..
T Consensus         9 ~dvvIIG~G~aGl~aA~~l~~~g~-~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~-~~   86 (325)
T 2q7v_A            9 YDVVIIGGGPAGLTAAIYTGRAQL-STLILEKGMPGGQIAWSEEVENFPGFPEPIAGMELAQRMHQQAEKFGAKVEM-DE   86 (325)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTC-CEEEEESSCTTGGGGGCSCBCCSTTCSSCBCHHHHHHHHHHHHHHTTCEEEE-CC
T ss_pred             CCEEEECCCHHHHHHHHHHHHcCC-cEEEEeCCCCCcccccccccccCCCCCCCCCHHHHHHHHHHHHHHcCCEEEe-ee
Confidence            459999999999999999999997 6999998621          00111     11222     234567898886 46


Q ss_pred             ceEEEcc--CCc-EEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccccccC
Q psy16200        130 PVQVDVK--DNK-IAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLD  181 (183)
Q Consensus       130 ~~~i~~~--~~~-v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~  181 (183)
                      +.++..+  ++. ++ +..             .+|  .++.+|.||+|+|..|..
T Consensus        87 v~~i~~~~~~~~~~~-v~~-------------~~g--~~~~~~~vv~AtG~~~~~  125 (325)
T 2q7v_A           87 VQGVQHDATSHPYPF-TVR-------------GYN--GEYRAKAVILATGADPRK  125 (325)
T ss_dssp             EEEEEECTTSSSCCE-EEE-------------ESS--CEEEEEEEEECCCEEECC
T ss_pred             EEEEEeccCCCceEE-EEE-------------CCC--CEEEeCEEEECcCCCcCC
Confidence            6666543  221 21 222             123  268999999999998764

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=98.26  E-value=9.3e-06  Score=71.50  Aligned_cols=31  Identities=29%  Similarity=0.561  Sum_probs=29.0

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      +|+|||||..|+++|..|++.|. +|+|++++
T Consensus        30 DVIVIGgG~AGl~AAlaLAr~G~-kVlLIEk~   60 (651)
T 3ces_A           30 DVIIIGGGHAGTEAAMAAARMGQ-QTLLLTHN   60 (651)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-CEEEEESC
T ss_pred             CEEEECChHHHHHHHHHHHhCCC-CEEEEeec
Confidence            49999999999999999999997 69999986

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=98.24  E-value=6.9e-06  Score=67.53  Aligned_cols=33  Identities=27%  Similarity=0.165  Sum_probs=29.8

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      -+|+|||||..|+.+|..|++.|. +|+|+++++
T Consensus         7 ~dVvIVGaG~aGl~~A~~L~~~G~-~V~viE~~~   39 (399)
T 2x3n_A            7 IDVLINGCGIGGAMLAYLLGRQGH-RVVVVEQAR   39 (399)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSC
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCC-cEEEEeCCC
Confidence            359999999999999999999997 699999864

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=98.24  E-value=7.7e-06  Score=64.98  Aligned_cols=92  Identities=18%  Similarity=0.147  Sum_probs=57.4

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCC----------cCCCC----HHHH-----HHHHHcCcEEEeCCcce
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCT----------NIRAV----PEEV-----QLAWEEKCEFLPFMSPV  131 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~----------~~~~~----~~~~-----~~~~~~gv~~~~~~~~~  131 (183)
                      .|+|||||..|+.+|..|+++|. +|+|+++....          ..|..    ..++     ....+.+..+.......
T Consensus         8 DvvIIG~GpAGl~aA~~l~~~g~-~V~liE~~~~gG~~~~~~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (312)
T 4gcm_A            8 DIAIIGAGPAGMTAAVYASRANL-KTVMIERGIPGGQMANTEEVENFPGFEMITGPDLSTKMFEHAKKFGAVYQYGDIKS   86 (312)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-CEEEEESSCTTGGGGGCSCBCCSTTCSSBCHHHHHHHHHHHHHHTTCEEEECCCCE
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC-CEEEEecCCCCCeeecccccCCcCCccccchHHHHHHHHHHHhhccccccceeeee
Confidence            49999999999999999999997 69999974210          01111    1121     12344556666555544


Q ss_pred             EEEccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccccccC
Q psy16200        132 QVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLD  181 (183)
Q Consensus       132 ~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~  181 (183)
                      .........    +            ...  ..++.+|.||+|+|.+|..
T Consensus        87 ~~~~~~~~~----~------------~~~--~~~~~~d~liiAtGs~~~~  118 (312)
T 4gcm_A           87 VEDKGEYKV----I------------NFG--NKELTAKAVIIATGAEYKK  118 (312)
T ss_dssp             EEECSSCEE----E------------ECS--SCEEEEEEEEECCCEEECC
T ss_pred             eeeeeccee----e------------ccC--CeEEEeceeEEcccCccCc
Confidence            333211111    1            012  2368899999999998864

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=98.23  E-value=8.9e-06  Score=64.54  Aligned_cols=93  Identities=15%  Similarity=0.174  Sum_probs=62.2

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCC----------cCCC-----CHHHH-----HHHHHcCcEEEeCCc
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCT----------NIRA-----VPEEV-----QLAWEEKCEFLPFMS  129 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~----------~~~~-----~~~~~-----~~~~~~gv~~~~~~~  129 (183)
                      .+|+|||||..|+.+|..|++.|. +|+++++....          ..+.     ...++     ..+.+.+++++++. 
T Consensus         6 ~~vvIIG~G~aGl~aA~~l~~~g~-~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   83 (320)
T 1trb_A            6 SKLLILGSGPAGYTAAVYAARANL-QPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFDH-   83 (320)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTC-CCEEECCSSTTGGGGGCSBCCCSTTCCSSCBHHHHHHHHHHHHHHTTCEEECCC-
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCC-cEEEEccCCCCceEecchhhhhCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEee-
Confidence            469999999999999999999997 69999863110          0111     11221     23456789988875 


Q ss_pred             ceEEEccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccccccC
Q psy16200        130 PVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLD  181 (183)
Q Consensus       130 ~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~  181 (183)
                      +..+..+++.++ + .             .++  .++.+|.||+|+|..|..
T Consensus        84 v~~i~~~~~~~~-v-~-------------~~~--~~~~~~~lv~AtG~~~~~  118 (320)
T 1trb_A           84 INKVDLQNRPFR-L-N-------------GDN--GEYTCDALIIATGASARY  118 (320)
T ss_dssp             EEEEECSSSSEE-E-E-------------ESS--CEEEEEEEEECCCEEECC
T ss_pred             eeEEEecCCEEE-E-E-------------eCC--CEEEcCEEEECCCCCcCC
Confidence            666654334433 2 1             122  268899999999998764

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=98.22  E-value=1.1e-05  Score=70.74  Aligned_cols=31  Identities=32%  Similarity=0.546  Sum_probs=29.0

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      +|+|||||..|+++|..|++.|. +|.|++++
T Consensus        29 DVIVIGgG~AGl~AAlalAr~G~-kVlLIEk~   59 (637)
T 2zxi_A           29 DVVVIGGGHAGIEAALAAARMGA-KTAMFVLN   59 (637)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTC-CEEEEESC
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC-CEEEEEec
Confidence            49999999999999999999997 69999986

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=98.21  E-value=8.4e-06  Score=66.44  Aligned_cols=31  Identities=23%  Similarity=0.431  Sum_probs=28.9

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      +|+|||||.+|+.+|..|++.|. +|+|++++
T Consensus         7 dVvIIGgGi~Gl~~A~~La~~G~-~V~lle~~   37 (382)
T 1y56_B            7 EIVVIGGGIVGVTIAHELAKRGE-EVTVIEKR   37 (382)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC-eEEEEeCC
Confidence            59999999999999999999997 69999985

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=98.21  E-value=9.5e-06  Score=69.35  Aligned_cols=32  Identities=38%  Similarity=0.499  Sum_probs=29.2

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      .|+|||+|..|+-+|..|++.|. +|+|+++.+
T Consensus        43 DVvVVGaG~AGl~AA~~aa~~G~-~V~vlEk~~   74 (510)
T 4at0_A           43 DVVVAGYGIAGVAASIEAARAGA-DVLVLERTS   74 (510)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-CEEEECSSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC-cEEEEeCCC
Confidence            49999999999999999999997 699999754

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=98.20  E-value=6.2e-06  Score=65.30  Aligned_cols=93  Identities=16%  Similarity=0.138  Sum_probs=57.9

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCC------cC---------CCC-----HHHH-----HHHHHcCcEEE
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCT------NI---------RAV-----PEEV-----QLAWEEKCEFL  125 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~------~~---------~~~-----~~~~-----~~~~~~gv~~~  125 (183)
                      .|+|||||..|+.+|..|+++|. +|+++++....      .+         +..     ..++     ..+.+.++.+.
T Consensus         6 DvvIIG~GpAGl~AA~~la~~g~-~v~liE~~~~gg~~~~G~~~~~~~i~~~~g~~~~i~~~~l~~~~~~~~~~~~~~~~   84 (314)
T 4a5l_A            6 DVVIIGSGPAAHTAAIYLGRSSL-KPVMYEGFMAGGVAAGGQLTTTTIIENFPGFPNGIDGNELMMNMRTQSEKYGTTII   84 (314)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-CCEEECCSSGGGCCTTCGGGGSSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCEEE
T ss_pred             cEEEECCCHHHHHHHHHHHHCCC-CEEEEecCCCCCcccCCCcCChHHhhhccCCcccCCHHHHHHHHHHHHhhcCcEEE
Confidence            49999999999999999999997 69999975310      00         111     1121     23355677766


Q ss_pred             eCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccccccC
Q psy16200        126 PFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLD  181 (183)
Q Consensus       126 ~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~  181 (183)
                      ... +........... +.               .....++.+|.||+|+|..|..
T Consensus        85 ~~~-v~~~~~~~~~~~-~~---------------~~~~~~~~~~~liiATG~~~~~  123 (314)
T 4a5l_A           85 TET-IDHVDFSTQPFK-LF---------------TEEGKEVLTKSVIIATGATAKR  123 (314)
T ss_dssp             CCC-EEEEECSSSSEE-EE---------------ETTCCEEEEEEEEECCCEEECC
T ss_pred             EeE-EEEeecCCCceE-EE---------------ECCCeEEEEeEEEEcccccccc
Confidence            543 333322222221 11               1223478999999999998864

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=98.17  E-value=1.6e-05  Score=67.02  Aligned_cols=32  Identities=34%  Similarity=0.473  Sum_probs=29.6

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      .+|+|||||..|+.+|..|++.|. +|+|++++
T Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~-~V~lie~~   36 (467)
T 1zk7_A            5 VQVAVIGSGGAAMAAALKAVEQGA-QVTLIERG   36 (467)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            469999999999999999999997 79999986

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=98.16  E-value=7.4e-06  Score=66.69  Aligned_cols=31  Identities=13%  Similarity=0.079  Sum_probs=28.9

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      +|+|||||.+|+-+|..|++.|. +|+|+++.
T Consensus        19 dvvIIGgG~~Gl~~A~~La~~G~-~V~llE~~   49 (382)
T 1ryi_A           19 EAVVIGGGIIGSAIAYYLAKENK-NTALFESG   49 (382)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred             CEEEECcCHHHHHHHHHHHhCCC-cEEEEeCC
Confidence            59999999999999999999997 69999974

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=98.16  E-value=1.4e-05  Score=65.53  Aligned_cols=32  Identities=22%  Similarity=0.314  Sum_probs=29.1

Q ss_pred             eEEEEcCChhHHHHHHHHHH-cC-CceEEEEEeec
Q psy16200         71 TVIVLGAGDTAFDCATSALR-CG-ANKVLVVFRKG  103 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~-~G-~~~V~lv~r~~  103 (183)
                      +|+|||||.+|+.+|..|++ .| . +|+|+++..
T Consensus        23 dVvIIG~G~~Gl~~A~~La~~~G~~-~V~vlE~~~   56 (405)
T 2gag_B           23 DAIIVGGGGHGLATAYFLAKNHGIT-NVAVLEKGW   56 (405)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHCCC-CEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHhcCCC-cEEEEeCCC
Confidence            59999999999999999999 89 7 699999753

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=98.14  E-value=1.4e-05  Score=69.30  Aligned_cols=51  Identities=14%  Similarity=0.130  Sum_probs=38.6

Q ss_pred             HHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEccccc
Q psy16200        118 WEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGST  178 (183)
Q Consensus       118 ~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~  178 (183)
                      .+.|+.+++++.+.++..+++++.++++.+          ..+|+..++.||.||.|+|.-
T Consensus       181 ~~~G~~i~~~~~V~~l~~~~g~v~gV~~~d----------~~tg~~~~i~A~~VV~AaG~~  231 (561)
T 3da1_A          181 VARGAVALNYMKVESFIYDQGKVVGVVAKD----------RLTDTTHTIYAKKVVNAAGPW  231 (561)
T ss_dssp             HHTTCEEEESEEEEEEEEETTEEEEEEEEE----------TTTCCEEEEEEEEEEECCGGG
T ss_pred             HHcCCEEEcCCEEEEEEEcCCeEEEEEEEE----------cCCCceEEEECCEEEECCCcc
Confidence            456888888888888876667777777643          135667789999999999964

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=98.14  E-value=1.2e-05  Score=68.91  Aligned_cols=95  Identities=15%  Similarity=0.125  Sum_probs=63.9

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCCcC------------CC-CHHHH-----HHHHHcCcEEEeCCcce
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNI------------RA-VPEEV-----QLAWEEKCEFLPFMSPV  131 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~~~------------~~-~~~~~-----~~~~~~gv~~~~~~~~~  131 (183)
                      .+|+|||||..|+.+|..|++.|. +|++++++.....            +. ...++     ..+.+.|++++.++.+.
T Consensus       213 ~dVvIIGgG~AGl~aA~~la~~G~-~v~lie~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~v~~~~~v~  291 (521)
T 1hyu_A          213 YDVLIVGSGPAGAAAAVYSARKGI-RTGLMGERFGGQVLDTVDIENYISVPKTEGQKLAGALKAHVSDYDVDVIDSQSAS  291 (521)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSTTGGGTTCSCBCCBTTBSSBCHHHHHHHHHHHHHTSCEEEECSCCEE
T ss_pred             ccEEEECCcHHHHHHHHHHHhCCC-eEEEEECCCCCcccccccccccCCCCCCCHHHHHHHHHHHHHHcCCEEEcCCEEE
Confidence            359999999999999999999997 6999976421000            11 11222     23456799999998888


Q ss_pred             EEEcc---CCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccccccC
Q psy16200        132 QVDVK---DNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLD  181 (183)
Q Consensus       132 ~i~~~---~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~  181 (183)
                      ++..+   ++..+ +++             .+|  .++.+|.||+|+|..|..
T Consensus       292 ~i~~~~~~~~~~~-V~~-------------~~g--~~~~~d~vVlAtG~~~~~  328 (521)
T 1hyu_A          292 KLVPAATEGGLHQ-IET-------------ASG--AVLKARSIIIATGAKWRN  328 (521)
T ss_dssp             EEECCSSTTSCEE-EEE-------------TTS--CEEEEEEEEECCCEEECC
T ss_pred             EEEeccCCCceEE-EEE-------------CCC--CEEEcCEEEECCCCCcCC
Confidence            88532   11222 332             233  268899999999987753

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=98.14  E-value=2.1e-05  Score=67.47  Aligned_cols=33  Identities=39%  Similarity=0.461  Sum_probs=29.9

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      -+|+|||||..|+-+|..|+++|. +|+|+++++
T Consensus         6 ~dVlIVGaG~aGl~~A~~La~~G~-~v~viEr~~   38 (535)
T 3ihg_A            6 VDVLVVGAGLGGLSTAMFLARQGV-RVLVVERRP   38 (535)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTC-CEEEECSSS
T ss_pred             CcEEEECcCHHHHHHHHHHHHCCC-CEEEEeCCC
Confidence            359999999999999999999998 699999864

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=98.13  E-value=1.9e-05  Score=68.25  Aligned_cols=95  Identities=16%  Similarity=0.105  Sum_probs=62.5

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCCc--------------CC----------------------CCHHH
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTN--------------IR----------------------AVPEE  113 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~~--------------~~----------------------~~~~~  113 (183)
                      -+|+|||||..|+.+|..|.+.|. +|+|+++++...              .+                      ....+
T Consensus        22 ~dVvIIGaG~aGl~aA~~L~~~G~-~v~iiE~~~~~GGtw~~~~ypg~~~dv~s~~y~~~f~~~~~~~~~~~~~~~~~~e  100 (549)
T 4ap3_A           22 YDVVVVGAGIAGLYAIHRFRSQGL-TVRAFEAASGVGGVWYWNRYPGARCDVESIDYSYSFSPELEQEWNWSEKYATQPE  100 (549)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCSSSSCBHHH
T ss_pred             CCEEEECchHHHHHHHHHHHhCCC-CEEEEeCCCCCCCccccCCCCCceeCCCchhcccccccccccCCCCccCCCCHHH
Confidence            359999999999999999999997 799999854210              00                      01112


Q ss_pred             HH-----HHHHcCc--EEEeCCcceEEEccCC-cEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEccc--cccc
Q psy16200        114 VQ-----LAWEEKC--EFLPFMSPVQVDVKDN-KIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFG--STLL  180 (183)
Q Consensus       114 ~~-----~~~~~gv--~~~~~~~~~~i~~~~~-~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G--~~p~  180 (183)
                      +.     .+.+.++  .+++++.+.++.-+++ ....|++             .+|+  ++.+|.||+|+|  ..|+
T Consensus       101 i~~yl~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~w~V~~-------------~~G~--~i~ad~lV~AtG~~s~p~  162 (549)
T 4ap3_A          101 ILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRT-------------DRGD--EVSARFLVVAAGPLSNAN  162 (549)
T ss_dssp             HHHHHHHHHHHTTCGGGEECSCCEEEEEEETTTTEEEEEE-------------TTCC--EEEEEEEEECCCSEEECC
T ss_pred             HHHHHHHHHHHcCCCccEEECCEEEEEEEcCCCCEEEEEE-------------CCCC--EEEeCEEEECcCCCCCCC
Confidence            21     2345676  7888888887754222 2221332             2333  689999999999  5554

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=98.12  E-value=2.9e-05  Score=66.33  Aligned_cols=96  Identities=18%  Similarity=0.202  Sum_probs=66.1

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCCcC------------------------------------------
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNI------------------------------------------  107 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~~~------------------------------------------  107 (183)
                      -+|+|||||.+|+-+|..|++.|. +|+|+++++....                                          
T Consensus        13 ~dVlIVGaGpaGl~~A~~La~~G~-~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~~   91 (499)
T 2qa2_A           13 ASVIVVGAGPAGLMLAGELRLGGV-DVMVLEQLPQRTGESRGLGFTARTMEVFDQRGILPAFGPVETSTQGHFGGRPVDF   91 (499)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTC-CEEEEESCSSCCCCCCSEEECHHHHHHHHHTTCGGGGCSCCEESEEEETTEEEEG
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCC-CEEEEECCCCCCCCCceeEECHHHHHHHHHCCCHHHHHhccccccceecceeccc
Confidence            359999999999999999999998 6999998532100                                          


Q ss_pred             ---C-CC-------HHHH-----HHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEE
Q psy16200        108 ---R-AV-------PEEV-----QLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYI  171 (183)
Q Consensus       108 ---~-~~-------~~~~-----~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~V  171 (183)
                         . ..       ...+     +.+.+.|+++++++.+.++..+++.++ +++.+           .+| ..++.+|+|
T Consensus        92 ~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~-v~~~~-----------~~g-~~~~~a~~v  158 (499)
T 2qa2_A           92 GVLEGAHYGVKAVPQSTTESVLEEWALGRGAELLRGHTVRALTDEGDHVV-VEVEG-----------PDG-PRSLTTRYV  158 (499)
T ss_dssp             GGSTTCCCEEEEEEHHHHHHHHHHHHHHTTCEEEESCEEEEEEECSSCEE-EEEEC-----------SSC-EEEEEEEEE
T ss_pred             ccCCCCCCceEecCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEE-EEEEc-----------CCC-cEEEEeCEE
Confidence               0 00       0111     123455888888888888876555554 44421           223 467999999


Q ss_pred             EEcccccc
Q psy16200        172 ISAFGSTL  179 (183)
Q Consensus       172 i~a~G~~p  179 (183)
                      |.|-|...
T Consensus       159 VgADG~~S  166 (499)
T 2qa2_A          159 VGCDGGRS  166 (499)
T ss_dssp             EECCCTTC
T ss_pred             EEccCccc
Confidence            99999753

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=98.11  E-value=3e-05  Score=66.24  Aligned_cols=95  Identities=19%  Similarity=0.179  Sum_probs=66.5

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCCc------------------------CC------------------
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTN------------------------IR------------------  108 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~~------------------------~~------------------  108 (183)
                      +|+|||||.+|+-+|..|++.|. +|+|+++++...                        +.                  
T Consensus        13 dVlIVGaGpaGl~~A~~La~~G~-~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~~~   91 (500)
T 2qa1_A           13 AVIVVGAGPAGMMLAGELRLAGV-EVVVLERLVERTGESRGLGFTARTMEVFDQRGILPRFGEVETSTQGHFGGLPIDFG   91 (500)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTC-CEEEEESCCC-CCCCCSEEECHHHHHHHHTTTCGGGGCSCCBCCEEEETTEEEEGG
T ss_pred             CEEEECcCHHHHHHHHHHHHCCC-CEEEEeCCCCCCCCCCcceECHHHHHHHHHCCCHHHHHhccccccccccceecccc
Confidence            59999999999999999999998 699999743210                        00                  


Q ss_pred             --CC---------HHHH-----HHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEE
Q psy16200        109 --AV---------PEEV-----QLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYII  172 (183)
Q Consensus       109 --~~---------~~~~-----~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi  172 (183)
                        ..         ...+     +.+.+.|+++++++.+.++..+++.++ +++.+           .+| ..++.+|+||
T Consensus        92 ~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~-v~~~~-----------~~g-~~~~~a~~vV  158 (500)
T 2qa1_A           92 VLEGAWQAAKTVPQSVTETHLEQWATGLGADIRRGHEVLSLTDDGAGVT-VEVRG-----------PEG-KHTLRAAYLV  158 (500)
T ss_dssp             GSTTGGGCEEEEEHHHHHHHHHHHHHHTTCEEEETCEEEEEEEETTEEE-EEEEE-----------TTE-EEEEEESEEE
T ss_pred             cCCCCCCceeecCHHHHHHHHHHHHHHCCCEEECCcEEEEEEEcCCeEE-EEEEc-----------CCC-CEEEEeCEEE
Confidence              00         0011     123456899999999999876556555 44431           223 4678999999


Q ss_pred             Ecccccc
Q psy16200        173 SAFGSTL  179 (183)
Q Consensus       173 ~a~G~~p  179 (183)
                      .|-|...
T Consensus       159 gADG~~S  165 (500)
T 2qa1_A          159 GCDGGRS  165 (500)
T ss_dssp             ECCCTTC
T ss_pred             ECCCcch
Confidence            9999753

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=98.11  E-value=9.3e-06  Score=68.54  Aligned_cols=32  Identities=31%  Similarity=0.468  Sum_probs=29.1

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      +|+|||||..|+.+|..|++.|. +|+|+++++
T Consensus         6 DVvVIGgG~aGl~aA~~l~~~G~-~V~liEk~~   37 (466)
T 3l8k_A            6 DVVVIGAGGAGYHGAFRLAKAKY-NVLMADPKG   37 (466)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-CEEEECTTS
T ss_pred             eEEEECCCHHHHHHHHHHHhCCC-eEEEEECCC
Confidence            49999999999999999999997 699999654

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=98.10  E-value=1.6e-05  Score=65.27  Aligned_cols=93  Identities=12%  Similarity=0.248  Sum_probs=63.6

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCc-eEEEEEeecCCc-----C----C--CCHHHH-----H-HHHHcCcEEEeCCcce
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGAN-KVLVVFRKGCTN-----I----R--AVPEEV-----Q-LAWEEKCEFLPFMSPV  131 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~-~V~lv~r~~~~~-----~----~--~~~~~~-----~-~~~~~gv~~~~~~~~~  131 (183)
                      .+|+|||||..|+.+|..|++.|.+ +|++++++....     +    +  .....+     . .+.+.|++++.+..+.
T Consensus         5 ~dvvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~   84 (384)
T 2v3a_A            5 APLVIIGTGLAGYNLAREWRKLDGETPLLMITADDGRSYSKPMLSTGFSKNKDADGLAMAEPGAMAEQLNARILTHTRVT   84 (384)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTCSSSCEEEECSSCCCEECGGGGGGTTTTTCCHHHHEEECHHHHHHHTTCEEECSCCCC
T ss_pred             CcEEEECChHHHHHHHHHHHhhCCCCCEEEEECCCCCccCcccccHHHhCCCCHHHhhccCHHHHHHhCCcEEEeCCEEE
Confidence            3599999999999999999999842 589998753210     0    0  011111     2 2356789999888888


Q ss_pred             EEEccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccccccC
Q psy16200        132 QVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLD  181 (183)
Q Consensus       132 ~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~  181 (183)
                      .+..+...+   ++              .+  .++.+|.||+|+|..|..
T Consensus        85 ~i~~~~~~v---~~--------------~~--~~~~~d~lviAtG~~p~~  115 (384)
T 2v3a_A           85 GIDPGHQRI---WI--------------GE--EEVRYRDLVLAWGAEPIR  115 (384)
T ss_dssp             EEEGGGTEE---EE--------------TT--EEEECSEEEECCCEEECC
T ss_pred             EEECCCCEE---EE--------------CC--cEEECCEEEEeCCCCcCC
Confidence            876433333   22              12  268999999999998865

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=98.09  E-value=1.7e-05  Score=68.54  Aligned_cols=96  Identities=14%  Similarity=0.098  Sum_probs=63.3

Q ss_pred             ceEEEEcCChhHHHHHHHHH-HcCCceEEEEEeecCCc-------CCC-----------------------------CHH
Q psy16200         70 GTVIVLGAGDTAFDCATSAL-RCGANKVLVVFRKGCTN-------IRA-----------------------------VPE  112 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~-~~G~~~V~lv~r~~~~~-------~~~-----------------------------~~~  112 (183)
                      -+|+|||||..|+.+|..|+ +.|. +|+|+++++...       .|.                             ...
T Consensus         9 ~dVvIIGaG~aGl~aA~~L~~~~G~-~v~viE~~~~~GGtw~~~~ypg~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~   87 (540)
T 3gwf_A            9 VDAVVIGAGFGGIYAVHKLHHELGL-TTVGFDKADGPGGTWYWNRYPGALSDTESHLYRFSFDRDLLQESTWKTTYITQP   87 (540)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCC-CEEEEESSSSSCTHHHHCCCTTCEEEEEGGGSSCCSCHHHHHHCCCSBSEEEHH
T ss_pred             CCEEEECcCHHHHHHHHHHHHcCCC-CEEEEECCCCCCCcccccCCCCceecCCcceeeeccccccccCCCCcccCCCHH
Confidence            35999999999999999999 8897 799999854210       000                             011


Q ss_pred             HHH-----HHHHcCc--EEEeCCcceEEEccCC-cEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccc--cccC
Q psy16200        113 EVQ-----LAWEEKC--EFLPFMSPVQVDVKDN-KIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGS--TLLD  181 (183)
Q Consensus       113 ~~~-----~~~~~gv--~~~~~~~~~~i~~~~~-~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~--~p~~  181 (183)
                      ++.     .+.+.|+  .+++++.+.++..+++ ....|++             .+|+  ++.+|.||+|+|.  .|..
T Consensus        88 ei~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~-------------~~G~--~i~ad~lV~AtG~~s~p~~  151 (540)
T 3gwf_A           88 EILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTT-------------DHGE--VYRAKYVVNAVGLLSAINF  151 (540)
T ss_dssp             HHHHHHHHHHHHTTCGGGEEESCCEEEEEEETTTTEEEEEE-------------TTSC--EEEEEEEEECCCSCCSBCC
T ss_pred             HHHHHHHHHHHHcCCcceeEeccEEEEEEEeCCCCEEEEEE-------------cCCC--EEEeCEEEECCcccccCCC
Confidence            221     2345677  7888888888764322 2222332             2333  6899999999994  5543

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=98.09  E-value=2.5e-05  Score=67.52  Aligned_cols=33  Identities=30%  Similarity=0.231  Sum_probs=30.0

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      -+|+|||||..|+.+|..|.+.|. +|+|+++++
T Consensus        10 ~dVvIIGaG~aGl~aA~~L~~~g~-~v~iiE~~~   42 (545)
T 3uox_A           10 LDAVVIGAGVTGIYQAFLINQAGM-KVLGIEAGE   42 (545)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSS
T ss_pred             CCEEEECccHHHHHHHHHHHhCCC-CEEEEeCCC
Confidence            369999999999999999999997 699999864

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=98.09  E-value=1.4e-05  Score=67.43  Aligned_cols=32  Identities=28%  Similarity=0.511  Sum_probs=29.6

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      +|+|||||..|+.+|..|++.|. +|+|+++++
T Consensus         4 dvvIIGgG~aGl~aA~~l~~~g~-~V~lie~~~   35 (468)
T 2qae_A            4 DVVVIGGGPGGYVASIKAAQLGM-KTACVEKRG   35 (468)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-CEEEEESSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCC
Confidence            59999999999999999999997 699999874

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=98.08  E-value=4.8e-05  Score=66.91  Aligned_cols=31  Identities=32%  Similarity=0.527  Sum_probs=29.1

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      +|+|||||..|+++|..|++.|. +|+|++++
T Consensus        23 DVIVIGgG~AGl~AAlaLAr~G~-kVlLIEk~   53 (641)
T 3cp8_A           23 DVIVVGAGHAGCEAALAVARGGL-HCLLITSD   53 (641)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-CEEEEESC
T ss_pred             CEEEECccHHHHHHHHHHHHCCC-cEEEEEec
Confidence            59999999999999999999997 69999986

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=98.07  E-value=2.5e-05  Score=62.65  Aligned_cols=93  Identities=19%  Similarity=0.160  Sum_probs=61.1

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCC----------cCCC-----CHHHH-----HHHHHcCcEEEeCCc
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCT----------NIRA-----VPEEV-----QLAWEEKCEFLPFMS  129 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~----------~~~~-----~~~~~-----~~~~~~gv~~~~~~~  129 (183)
                      .+|+|||||..|+.+|..|++.|. +|+++++....          ..+.     ...++     ..+.+.|++++.+. 
T Consensus        15 ~~vvIIG~G~aGl~aA~~l~~~g~-~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~~-   92 (335)
T 2a87_A           15 RDVIVIGSGPAGYTAALYAARAQL-APLVFEGTSFGGALMTTTDVENYPGFRNGITGPELMDEMREQALRFGADLRMED-   92 (335)
T ss_dssp             EEEEEECCHHHHHHHHHHHHHTTC-CCEEECCSSCSCGGGSCSCBCCSTTCTTCBCHHHHHHHHHHHHHHTTCEEECCC-
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCC-eEEEEecCCCCCceeccchhhhcCCCCCCCCHHHHHHHHHHHHHHcCCEEEEee-
Confidence            469999999999999999999997 69999863110          0111     11222     22456789988875 


Q ss_pred             ceEEEccCCcEEEE-EEEEeeecCCCCeecCCCceEEEECCEEEEcccccccC
Q psy16200        130 PVQVDVKDNKIAGM-QFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLD  181 (183)
Q Consensus       130 ~~~i~~~~~~v~~v-~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~  181 (183)
                      +.++.. ++..+ + .+             .++  .++.+|.||+|+|..|..
T Consensus        93 v~~i~~-~~~~~-v~~~-------------~~g--~~~~~d~lviAtG~~~~~  128 (335)
T 2a87_A           93 VESVSL-HGPLK-SVVT-------------ADG--QTHRARAVILAMGAAARY  128 (335)
T ss_dssp             EEEEEC-SSSSE-EEEE-------------TTS--CEEEEEEEEECCCEEECC
T ss_pred             EEEEEe-CCcEE-EEEe-------------CCC--CEEEeCEEEECCCCCccC
Confidence            666653 22221 2 11             123  368999999999998764

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=98.06  E-value=4.4e-05  Score=62.83  Aligned_cols=33  Identities=24%  Similarity=0.319  Sum_probs=30.4

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      .+|+|||||..|+.+|..|++.|. +|+|+++++
T Consensus        27 ~dV~IVGaG~aGl~~A~~L~~~G~-~v~v~E~~~   59 (398)
T 2xdo_A           27 KNVAIIGGGPVGLTMAKLLQQNGI-DVSVYERDN   59 (398)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTC-EEEEEECSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCC-CEEEEeCCC
Confidence            469999999999999999999997 799999875

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=98.05  E-value=4.7e-05  Score=65.25  Aligned_cols=33  Identities=21%  Similarity=0.170  Sum_probs=30.2

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      .+|+|||||..|+.+|..|++.|. +|+|++++.
T Consensus        44 ~dVvIIGgG~aGl~aA~~l~~~G~-~V~liE~~~   76 (523)
T 1mo9_A           44 YDAIFIGGGAAGRFGSAYLRAMGG-RQLIVDRWP   76 (523)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTC-CEEEEESSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCC-CEEEEeCCC
Confidence            359999999999999999999997 699999875

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=98.05  E-value=8.7e-06  Score=69.38  Aligned_cols=34  Identities=32%  Similarity=0.451  Sum_probs=29.4

Q ss_pred             ceEEEEcCChhHHHHHHHHHHc--CCceEEEEEeecC
Q psy16200         70 GTVIVLGAGDTAFDCATSALRC--GANKVLVVFRKGC  104 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~--G~~~V~lv~r~~~  104 (183)
                      .+|+|||||..|+.+|..|.+.  |. +|+||++++.
T Consensus        12 ~~vvIIGgG~AGl~aA~~L~~~~~g~-~V~lie~~~~   47 (493)
T 1m6i_A           12 VPFLLIGGGTAAFAAARSIRARDPGA-RVLIVSEDPE   47 (493)
T ss_dssp             EEEEEESCSHHHHHHHHHHHHHSTTC-EEEEEESSSS
T ss_pred             CCEEEECChHHHHHHHHHHHhcCCCC-eEEEEeCCCC
Confidence            4599999999999999999877  76 7999998753

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=98.04  E-value=1.2e-05  Score=67.90  Aligned_cols=33  Identities=24%  Similarity=0.400  Sum_probs=30.1

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      .+|+|||||..|+.+|..|+++|. +|+|+++++
T Consensus         7 ~dvvIIGgG~aGl~aA~~l~~~g~-~V~liE~~~   39 (474)
T 1zmd_A            7 ADVTVIGSGPGGYVAAIKAAQLGF-KTVCIEKNE   39 (474)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTC-CEEEEECSS
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCC-eEEEEeCCC
Confidence            359999999999999999999997 699999874

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=98.04  E-value=3.8e-05  Score=63.30  Aligned_cols=32  Identities=25%  Similarity=0.249  Sum_probs=29.8

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      +|+|||||..|+-+|..|++.|. +|+|+++.+
T Consensus        25 dV~IVGaG~aGl~~A~~La~~G~-~V~v~E~~~   56 (407)
T 3rp8_A           25 KAIVIGAGIGGLSAAVALKQSGI-DCDVYEAVK   56 (407)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEEESSS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCC-CEEEEeCCC
Confidence            59999999999999999999997 799999865

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=98.03  E-value=2.3e-05  Score=68.04  Aligned_cols=95  Identities=15%  Similarity=0.124  Sum_probs=65.9

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCCc------------------------------------CC-----C
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTN------------------------------------IR-----A  109 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~~------------------------------------~~-----~  109 (183)
                      +|+|||||.+|+-+|..|++.|. +|+|+++.+...                                    ..     .
T Consensus        51 DVvIVGaG~aGL~~A~~La~~G~-~V~VlEr~~~~~~~~r~~~l~~~s~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~  129 (570)
T 3fmw_A           51 DVVVVGGGPVGLMLAGELRAGGV-GALVLEKLVEPVGHDRAGALHIRTVETLDLRGLLDRFLEGTQVAKGLPFAGIFTQG  129 (570)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTC-CEEEEBSCSSCCCSSSCCCBCHHHHHHHHTTTCHHHHTTSCCBCSBCCBTTBCTTC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCC-CEEEEcCCCCCCCCceEEEECHHHHHHHHHcCChHHHHhcCcccCCceeCCccccc
Confidence            59999999999999999999998 699999753210                                    00     0


Q ss_pred             ----------------CHHHH-----HHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCceEEEEC
Q psy16200        110 ----------------VPEEV-----QLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKA  168 (183)
Q Consensus       110 ----------------~~~~~-----~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~  168 (183)
                                      ....+     +.+.+.|+++++++.+.++..+++.++ +++..           .+| +.++.+
T Consensus       130 ~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~~~v~-v~~~~-----------~~G-~~~~~a  196 (570)
T 3fmw_A          130 LDFGLVDTRHPYTGLVPQSRTEALLAEHAREAGAEIPRGHEVTRLRQDAEAVE-VTVAG-----------PSG-PYPVRA  196 (570)
T ss_dssp             CBGGGSCCSCCSBBCCCHHHHHHHHHHHHHHHTEECCBSCEEEECCBCSSCEE-EEEEE-----------TTE-EEEEEE
T ss_pred             ccccccCCCCCeeEEeCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCeEE-EEEEe-----------CCC-cEEEEe
Confidence                            00111     223456899999999988876555554 44421           123 267999


Q ss_pred             CEEEEcccccc
Q psy16200        169 NYIISAFGSTL  179 (183)
Q Consensus       169 D~Vi~a~G~~p  179 (183)
                      |+||.|-|...
T Consensus       197 ~~vV~ADG~~S  207 (570)
T 3fmw_A          197 RYGVGCDGGRS  207 (570)
T ss_dssp             SEEEECSCSSC
T ss_pred             CEEEEcCCCCc
Confidence            99999999754

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.02  E-value=2.2e-05  Score=66.11  Aligned_cols=33  Identities=24%  Similarity=0.490  Sum_probs=30.0

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      .+|+|||||..|+.+|..|++.|. +|+++++++
T Consensus         7 ~dvvIIGaG~aGl~aA~~l~~~g~-~V~liE~~~   39 (470)
T 1dxl_A            7 NDVVIIGGGPGGYVAAIKAAQLGF-KTTCIEKRG   39 (470)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHTC-CEEEEECSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCC
Confidence            359999999999999999999997 699999874

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=98.02  E-value=7e-05  Score=61.17  Aligned_cols=107  Identities=14%  Similarity=0.151  Sum_probs=68.0

Q ss_pred             eEEEEcCChhHHHHHHHHHHc--CCceEEEEEeecCCc--------C-------------------C----------CCH
Q psy16200         71 TVIVLGAGDTAFDCATSALRC--GANKVLVVFRKGCTN--------I-------------------R----------AVP  111 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~--G~~~V~lv~r~~~~~--------~-------------------~----------~~~  111 (183)
                      +|+|||||..|+-+|..|+++  |. +|+|+++.....        .                   +          ...
T Consensus        81 DVvIVGgG~AGL~aA~~La~~~~G~-~V~LiEk~~~~GGg~~~~g~~~~~~~~~~~~~~~L~~~Gv~~~~~G~~~~~~~~  159 (344)
T 3jsk_A           81 DIVIVGAGSCGLSAAYVLSTLRPDL-RITIVEAGVAPGGGAWLGGQLFSAMVMRKPADVFLDEVGVPYEDEGDYVVVKHA  159 (344)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHCTTS-CEEEEESSSSCCTTTTCCBTTCCCEEEETTTHHHHHHHTCCCEECSSEEEESCH
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCC-EEEEEeCCCccCCccccCCccchhhhcchHHHHHHHHcCCcccccCCeEEEecH
Confidence            499999999999999999997  87 699999864211        0                   0          000


Q ss_pred             HH-----HHHHHH-cCcEEEeCCcceEEEccC-----------------C--cEEEEEEEEeeecCCCCeecCCCceEEE
Q psy16200        112 EE-----VQLAWE-EKCEFLPFMSPVQVDVKD-----------------N--KIAGMQFNRTEQNEKGEWVEDEEQRIKL  166 (183)
Q Consensus       112 ~~-----~~~~~~-~gv~~~~~~~~~~i~~~~-----------------~--~v~~v~~~~~~~~~~~~~~~~~g~~~~i  166 (183)
                      .+     +..+.+ .|++++.++.+.++..++                 +  ++.++.+........+.. .......++
T Consensus       160 ~d~~~~L~~~a~~~~gV~i~~~~~V~dLi~~~d~~~~~~~~~~g~~~~~g~~rV~GVv~~~~~v~~~g~~-~~~~d~~~i  238 (344)
T 3jsk_A          160 ALFTSTVLSKVLQRPNVKLFNATTVEDLITRKHHAESSSSSDDGEAEDEAKVRIAGVVTNWTLVSMHHDD-QSAMDPNTI  238 (344)
T ss_dssp             HHHHHHHHHHHHTCTTEEEEETEEEEEEEEEEC----------------CCEEEEEEEEEEHHHHTTSSS-SSCCBCEEE
T ss_pred             HHHHHHHHHHHHhCCCCEEEeCCEEEEEEecCCcccccccccccccccCCCceEeEEEeeeeeeeccCCc-ccccCceEE
Confidence            01     122334 489999999988876533                 2  677765532110111110 001234689


Q ss_pred             ECCEEEEcccccc
Q psy16200        167 KANYIISAFGSTL  179 (183)
Q Consensus       167 ~~D~Vi~a~G~~p  179 (183)
                      .++.||.|+|...
T Consensus       239 ~Ak~VV~ATG~~s  251 (344)
T 3jsk_A          239 NAPVIISTTGHDG  251 (344)
T ss_dssp             ECSEEEECCCSSS
T ss_pred             EcCEEEECCCCCc
Confidence            9999999999764

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=98.01  E-value=5.5e-05  Score=61.71  Aligned_cols=33  Identities=27%  Similarity=0.253  Sum_probs=30.2

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC  104 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~  104 (183)
                      ||+|||||..|+-+|..|+++|. +|+|++|++.
T Consensus         3 ~V~IVGaGpaGl~~A~~L~~~G~-~v~v~Er~~~   35 (412)
T 4hb9_A            3 HVGIIGAGIGGTCLAHGLRKHGI-KVTIYERNSA   35 (412)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCC-CEEEEecCCC
Confidence            69999999999999999999998 6999998653

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=98.01  E-value=4.1e-05  Score=66.67  Aligned_cols=106  Identities=18%  Similarity=0.219  Sum_probs=68.9

Q ss_pred             eEEEEcCChhHHHHHHHHHHc------CCceEEEEEeecCCc--------------------------------------
Q psy16200         71 TVIVLGAGDTAFDCATSALRC------GANKVLVVFRKGCTN--------------------------------------  106 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~------G~~~V~lv~r~~~~~--------------------------------------  106 (183)
                      +|+|||||..|+-+|..|++.      |. +|+|+++.+...                                      
T Consensus        37 DVvIVGaG~aGlaaA~~La~~~~~~~~G~-~V~vlEk~~~~g~~~~~g~~l~~~~l~~ll~~~~~~g~~~~~~~~~~~~~  115 (584)
T 2gmh_A           37 DVVIVGAGPAGLSAATRLKQLAAQHEKDL-RVCLVEKAAHIGAHTLSGACLDPRAFEELFPDWKEKGAPLNTPVTEDRFG  115 (584)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHHHHTTCCC-CEEEECSSSSTTTTCCCCCEECTHHHHHHCTTHHHHTCCCCEECCEEEEE
T ss_pred             CEEEECcCHHHHHHHHHHHhcccccCCCC-cEEEEeCCCCCCCccccccccCHHHHHHHHHHHHhcCCceeeeechhhee
Confidence            599999999999999999999      97 699999853210                                      


Q ss_pred             ---------C---CC--C---------HHH-----HHHHHHcCcEEEeCCcceEEEccC-CcEEEEEEEEeeecCCCCee
Q psy16200        107 ---------I---RA--V---------PEE-----VQLAWEEKCEFLPFMSPVQVDVKD-NKIAGMQFNRTEQNEKGEWV  157 (183)
Q Consensus       107 ---------~---~~--~---------~~~-----~~~~~~~gv~~~~~~~~~~i~~~~-~~v~~v~~~~~~~~~~~~~~  157 (183)
                               +   +.  .         ...     .+.+.+.|+++++++.+.++..++ +.+.+|++.++..+.+|...
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~l~~~~~g~V~gV~~~~~g~~~~G~~~  195 (584)
T 2gmh_A          116 ILTEKYRIPVPILPGLPMNNHGNYVVRLGHLVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPK  195 (584)
T ss_dssp             EECSSCEEECCCCTTSTTCCTTCEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEEECTTSSEEEEEECCEEECTTSCEE
T ss_pred             eeccCCCccccccCccccccCCCEEEeHHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCCCEEEEEeCCccccCCCCcc
Confidence                     0   00  0         001     123456699999999999987543 56776765321111122100


Q ss_pred             c--CCCceEEEECCEEEEcccccc
Q psy16200        158 E--DEEQRIKLKANYIISAFGSTL  179 (183)
Q Consensus       158 ~--~~g~~~~i~~D~Vi~a~G~~p  179 (183)
                      .  .+  ..++.+|.||.|.|...
T Consensus       196 ~~~~~--g~~i~Ad~VV~AdG~~S  217 (584)
T 2gmh_A          196 TTFER--GLELHAKVTIFAEGCHG  217 (584)
T ss_dssp             EEEEC--CCEEECSEEEECCCTTC
T ss_pred             cccCC--ceEEECCEEEEeeCCCc
Confidence            0  00  14789999999999864

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=97.99  E-value=2.4e-05  Score=65.91  Aligned_cols=31  Identities=35%  Similarity=0.462  Sum_probs=28.9

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      +|+|||||..|+.+|..|++.|. +|+|++++
T Consensus         5 dvvIIGaG~aGl~aA~~l~~~G~-~V~liE~~   35 (464)
T 2a8x_A            5 DVVVLGAGPGGYVAAIRAAQLGL-STAIVEPK   35 (464)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred             CEEEECCCHHHHHHHHHHHhCCC-eEEEEeCC
Confidence            59999999999999999999997 69999986

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=97.98  E-value=0.00011  Score=60.72  Aligned_cols=33  Identities=21%  Similarity=0.384  Sum_probs=30.1

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCce-EEEEEeecC
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANK-VLVVFRKGC  104 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~-V~lv~r~~~  104 (183)
                      +|+|||||..|+-+|..|++.|. + |+|+++++.
T Consensus         6 dVvIVGaG~aGl~~A~~L~~~G~-~~v~v~E~~~~   39 (410)
T 3c96_A            6 DILIAGAGIGGLSCALALHQAGI-GKVTLLESSSE   39 (410)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-SEEEEEESSSS
T ss_pred             eEEEECCCHHHHHHHHHHHhCCC-CeEEEEECCCC
Confidence            59999999999999999999997 7 999998643

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=97.98  E-value=3.5e-05  Score=65.59  Aligned_cols=32  Identities=25%  Similarity=0.487  Sum_probs=29.4

Q ss_pred             eEEEEcCChhHHHHHHHHHHc---CCceEEEEEeec
Q psy16200         71 TVIVLGAGDTAFDCATSALRC---GANKVLVVFRKG  103 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~---G~~~V~lv~r~~  103 (183)
                      +|+|||||..|+.+|..|+++   |. +|+|++++.
T Consensus         4 dVvIIGgG~aGl~aA~~l~~~~~~G~-~V~liE~~~   38 (499)
T 1xdi_A            4 RIVILGGGPAGYEAALVAATSHPETT-QVTVIDCDG   38 (499)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTTE-EEEEEESSC
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCCcC-EEEEEeCCC
Confidence            599999999999999999999   97 799999873

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=97.97  E-value=4.4e-05  Score=61.44  Aligned_cols=31  Identities=29%  Similarity=0.280  Sum_probs=28.6

Q ss_pred             eEEEEcCChhHHHHHHHHHH---cCCceEEEEEee
Q psy16200         71 TVIVLGAGDTAFDCATSALR---CGANKVLVVFRK  102 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~---~G~~~V~lv~r~  102 (183)
                      +|+|||||..|+-+|..|++   .|. +|++++++
T Consensus         3 dV~IIGaG~aGl~~A~~L~~~~~~G~-~V~v~Ek~   36 (342)
T 3qj4_A            3 QVLIVGAGMTGSLCAALLRRQTSGPL-YLAVWDKA   36 (342)
T ss_dssp             EEEEECCSHHHHHHHHHHHSCC-CCE-EEEEECSS
T ss_pred             cEEEECCcHHHHHHHHHHHhhccCCc-eEEEEECC
Confidence            59999999999999999999   886 79999975

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=97.96  E-value=1.1e-05  Score=68.77  Aligned_cols=96  Identities=16%  Similarity=0.174  Sum_probs=63.5

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCC--cC----------CCCHHH-HHHHH---HcCcEEEeCCcceEEE
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCT--NI----------RAVPEE-VQLAW---EEKCEFLPFMSPVQVD  134 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~--~~----------~~~~~~-~~~~~---~~gv~~~~~~~~~~i~  134 (183)
                      +|+|||||..|+.+|..|++. . +|+|+++++..  ..          +....+ +..+.   ..+++++++..+.++.
T Consensus       110 dVvIIGgG~aGl~aA~~L~~~-~-~V~vie~~~~~GG~~~~~~~~~~g~~~~~~~~~~~l~~~l~~~v~~~~~~~v~~i~  187 (493)
T 1y56_A          110 DVAIIGGGPAGIGAALELQQY-L-TVALIEERGWLGGDMWLKGIKQEGFNKDSRKVVEELVGKLNENTKIYLETSALGVF  187 (493)
T ss_dssp             SCCEECCSHHHHHHHHHHTTT-C-CEEEECTTSSSSCSGGGTCSEETTTTEEHHHHHHHHHHTCCTTEEEETTEEECCCE
T ss_pred             CEEEECccHHHHHHHHHHHhc-C-CEEEEeCCCCCCCeeeccccccCCCCCCHHHHHHHHHHHHhcCCEEEcCCEEEEEE
Confidence            599999999999999999998 6 69999986532  00          001112 22222   4588888887777665


Q ss_pred             ccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccccccC
Q psy16200        135 VKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLD  181 (183)
Q Consensus       135 ~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~  181 (183)
                      .++..+. +...            ..+....+.+|.+|+|+|..|..
T Consensus       188 ~~~~~~~-~~~~------------~~~~~~~~~~d~lvlAtGa~~~~  221 (493)
T 1y56_A          188 DKGEYFL-VPVV------------RGDKLIEILAKRVVLATGAIDST  221 (493)
T ss_dssp             ECSSSEE-EEEE------------ETTEEEEEEESCEEECCCEEECC
T ss_pred             cCCcEEE-EEEe------------cCCeEEEEECCEEEECCCCCccC
Confidence            4333332 1110            13444578999999999998754

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=97.96  E-value=6.8e-05  Score=60.70  Aligned_cols=32  Identities=25%  Similarity=0.367  Sum_probs=29.2

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      +|+|||||.+|+.+|..|++.|. +|+|+++..
T Consensus         4 dvvIIG~Gi~Gl~~A~~La~~G~-~V~vle~~~   35 (372)
T 2uzz_A            4 DLIIIGSGSVGAAAGYYATRAGL-NVLMTDAHM   35 (372)
T ss_dssp             EEEESCTTHHHHHHHHHHHHTTC-CEEEECSSC
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC-eEEEEecCC
Confidence            49999999999999999999997 699999853

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=97.95  E-value=1.2e-05  Score=68.04  Aligned_cols=84  Identities=21%  Similarity=0.186  Sum_probs=57.7

Q ss_pred             cceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCC------cCCCC---HH----HHHHHHHcCcEEEeCCcceEEEc
Q psy16200         69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCT------NIRAV---PE----EVQLAWEEKCEFLPFMSPVQVDV  135 (183)
Q Consensus        69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~------~~~~~---~~----~~~~~~~~gv~~~~~~~~~~i~~  135 (183)
                      +++|+|||||..|+.+|..|++.|. +|+|+++.+..      .+|..   ..    ....+.+.|++|++++.+.    
T Consensus       122 ~~~V~IIGgGpAGl~aA~~L~~~G~-~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~----  196 (456)
T 2vdc_G          122 GLSVGVIGAGPAGLAAAEELRAKGY-EVHVYDRYDRMGGLLVYGIPGFKLEKSVVERRVKLLADAGVIYHPNFEVG----  196 (456)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHHTC-CEEEECSSSSCSTHHHHTSCTTTSCHHHHHHHHHHHHHTTCEEETTCCBT----
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeccCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCcEEEeCCEec----
Confidence            3569999999999999999999997 69999986532      02221   11    2234567899999887642    


Q ss_pred             cCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEccccc
Q psy16200        136 KDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGST  178 (183)
Q Consensus       136 ~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~  178 (183)
                        ..+   ++.             +   ..+.+|.||+|+|..
T Consensus       197 --~~v---~~~-------------~---~~~~~d~vvlAtG~~  218 (456)
T 2vdc_G          197 --RDA---SLP-------------E---LRRKHVAVLVATGVY  218 (456)
T ss_dssp             --TTB---CHH-------------H---HHSSCSEEEECCCCC
T ss_pred             --cEE---Ehh-------------H---hHhhCCEEEEecCCC
Confidence              111   110             0   124689999999986

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=97.95  E-value=5.9e-05  Score=63.90  Aligned_cols=33  Identities=36%  Similarity=0.430  Sum_probs=29.6

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      .+|+|||||..|+.+|..|++.|. +|+|+++++
T Consensus         7 ~dVvIIGaG~aGl~aA~~l~~~G~-~V~liE~~~   39 (482)
T 1ojt_A            7 YDVVVLGGGPGGYSAAFAAADEGL-KVAIVERYK   39 (482)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTC-CEEEEESSS
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCC-eEEEEeCCC
Confidence            359999999999999999999997 699999853

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=97.94  E-value=9e-06  Score=68.72  Aligned_cols=32  Identities=25%  Similarity=0.498  Sum_probs=29.3

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      +|+|||||..|+.+|..|++.|. +|+|+++++
T Consensus         7 dVvIIGgG~aGl~aA~~l~~~G~-~V~liE~~~   38 (478)
T 1v59_A            7 DVVIIGGGPAGYVAAIKAAQLGF-NTACVEKRG   38 (478)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-CEEEEESSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC-eEEEEecCC
Confidence            59999999999999999999997 699999853

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=97.93  E-value=8.9e-05  Score=60.14  Aligned_cols=107  Identities=14%  Similarity=0.117  Sum_probs=67.8

Q ss_pred             eEEEEcCChhHHHHHHHHHHc--CCceEEEEEeecCCc--CC-------------C----------------------CH
Q psy16200         71 TVIVLGAGDTAFDCATSALRC--GANKVLVVFRKGCTN--IR-------------A----------------------VP  111 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~--G~~~V~lv~r~~~~~--~~-------------~----------------------~~  111 (183)
                      +|+|||||..|+.+|..|++.  |. +|+++++.....  ..             .                      ..
T Consensus        67 dv~IiG~G~aGl~aA~~la~~~~g~-~V~v~e~~~~~ggg~~~~g~~~~~~~~~~~~~~~L~~~Gv~~~~~g~~~~~~~~  145 (326)
T 2gjc_A           67 DVIIVGAGSSGLSAAYVIAKNRPDL-KVCIIESSVAPGGGSWLGGQLFSAMVMRKPAHLFLQELEIPYEDEGDYVVVKHA  145 (326)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHCTTS-CEEEECSSSSCCTTTTCCGGGCCCEEEETTTHHHHHHTTCCCEECSSEEEESCH
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCC-eEEEEecCccccccccccCcccchhhhhhHHHHHHHhhCcccccCCCeEEEcch
Confidence            599999999999999999998  87 699999854321  00             0                      00


Q ss_pred             HH-----HHHHHH-cCcEEEeCCcceEEEcc---C-C--cEEEEEEEEeeecCCCCeecCCCceEEEEC-----------
Q psy16200        112 EE-----VQLAWE-EKCEFLPFMSPVQVDVK---D-N--KIAGMQFNRTEQNEKGEWVEDEEQRIKLKA-----------  168 (183)
Q Consensus       112 ~~-----~~~~~~-~gv~~~~~~~~~~i~~~---~-~--~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~-----------  168 (183)
                      .+     ...+.+ .|++++.++.+.++..+   + +  ++.++.+.......++... ......++.|           
T Consensus       146 ~~~~~~L~~~a~~~~GV~i~~~~~V~~Ll~~~~~~~g~~rV~GVvv~~~~v~~~g~~~-~~~d~~~I~A~G~~~~~~~~~  224 (326)
T 2gjc_A          146 ALFISTVLSKVLQLPNVKLFNATCVEDLVTRPPTEKGEVTVAGVVTNWTLVTQAHGTQ-CCMDPNVIELAGYKNDGTRDL  224 (326)
T ss_dssp             HHHHHHHHHHHHTSTTEEEETTEEEEEEEECCCC-----CEEEEEEEEHHHHTC---C-CCCCCEEEEESCCCSSSCCCS
T ss_pred             HHHHHHHHHHHHHhcCcEEEecceeeeeeecccccCCCcEEEEEEecceeecccccce-eccCceEEEEeeccccccccc
Confidence            11     112334 48999999999988754   2 4  7888866421111111000 1113457899           


Q ss_pred             ----CEEEEcccccc
Q psy16200        169 ----NYIISAFGSTL  179 (183)
Q Consensus       169 ----D~Vi~a~G~~p  179 (183)
                          |.||.|+|...
T Consensus       225 ~~~~~~VV~ATG~~~  239 (326)
T 2gjc_A          225 SQKHGVILSTTGHDG  239 (326)
T ss_dssp             STTCCEEEECCCCC-
T ss_pred             cccCCEEEECcCCCc
Confidence                99999999764

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=97.93  E-value=0.00013  Score=64.42  Aligned_cols=32  Identities=19%  Similarity=0.215  Sum_probs=29.4

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      .+|+|||||..|+-+|..|++.|. +|+|+++.
T Consensus       273 ~DVvIIGgGiaGlsaA~~La~~G~-~V~vlEk~  304 (676)
T 3ps9_A          273 REAAIIGGGIASALLSLALLRRGW-QVTLYCAD  304 (676)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTC-EEEEEESS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCC-eEEEEeCC
Confidence            359999999999999999999997 79999984

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.92  E-value=4.5e-05  Score=64.07  Aligned_cols=31  Identities=32%  Similarity=0.470  Sum_probs=28.9

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      +|+|||||..|+.+|..|++.|. +|+|++++
T Consensus         5 dvvIIGgG~aGl~aA~~l~~~g~-~V~lie~~   35 (455)
T 1ebd_A            5 ETLVVGAGPGGYVAAIRAAQLGQ-KVTIVEKG   35 (455)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred             CEEEECCCHHHHHHHHHHHhCCC-eEEEEECC
Confidence            49999999999999999999997 69999986

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=97.92  E-value=6.9e-05  Score=63.84  Aligned_cols=31  Identities=29%  Similarity=0.371  Sum_probs=28.7

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      +|+|||||.+|+-+|..|+++|. +|+|+++.
T Consensus         5 DVvIIGgGi~G~~~A~~La~~G~-~V~llE~~   35 (501)
T 2qcu_A            5 DLIVIGGGINGAGIAADAAGRGL-SVLMLEAQ   35 (501)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred             CEEEECcCHHHHHHHHHHHhCCC-CEEEEECC
Confidence            49999999999999999999997 69999974

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=97.91  E-value=6.3e-05  Score=63.68  Aligned_cols=31  Identities=35%  Similarity=0.474  Sum_probs=29.0

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      +|+|||||..|+.+|..|++.|. +|+|++++
T Consensus        13 dVvVIGgG~aGl~aA~~l~~~g~-~V~liE~~   43 (479)
T 2hqm_A           13 DYLVIGGGSGGVASARRAASYGA-KTLLVEAK   43 (479)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTSC-CEEEEESS
T ss_pred             CEEEEcCCHHHHHHHHHHHHCCC-cEEEEeCC
Confidence            59999999999999999999997 69999986

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=97.90  E-value=5.2e-05  Score=66.30  Aligned_cols=31  Identities=23%  Similarity=0.453  Sum_probs=28.6

Q ss_pred             eEEEEcCChhHHHHHHHHHHcC--CceEEEEEee
Q psy16200         71 TVIVLGAGDTAFDCATSALRCG--ANKVLVVFRK  102 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G--~~~V~lv~r~  102 (183)
                      .|+|||||..|+-+|..|++.|  . +|+|+++.
T Consensus         7 DVvIVG~G~AGl~aAl~la~~G~~~-~V~vlEk~   39 (602)
T 1kf6_A            7 DLAIVGAGGAGLRAAIAAAQANPNA-KIALISKV   39 (602)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHCTTC-CEEEEESS
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCC-cEEEEeCC
Confidence            4999999999999999999999  8 59999985

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=97.89  E-value=6.7e-05  Score=63.64  Aligned_cols=33  Identities=36%  Similarity=0.584  Sum_probs=29.8

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      .+|+|||||..|+.+|..|+++|. +|+|+++++
T Consensus        26 ~dVvVIGgG~aGl~aA~~la~~G~-~V~liEk~~   58 (491)
T 3urh_A           26 YDLIVIGSGPGGYVCAIKAAQLGM-KVAVVEKRS   58 (491)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTC-CEEEEESSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCC-eEEEEecCC
Confidence            359999999999999999999997 699999754

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=97.88  E-value=5e-05  Score=61.77  Aligned_cols=32  Identities=31%  Similarity=0.396  Sum_probs=29.3

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      +|+|||||.+|+-+|..|++.|. +|+|+++..
T Consensus         5 dvvIIGaG~~Gl~~A~~La~~G~-~V~vie~~~   36 (389)
T 2gf3_A            5 DVIVVGAGSMGMAAGYQLAKQGV-KTLLVDAFD   36 (389)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-CEEEECSSC
T ss_pred             CEEEECCCHHHHHHHHHHHhCCC-eEEEEeCCC
Confidence            59999999999999999999997 699999854

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=97.87  E-value=0.00012  Score=62.13  Aligned_cols=30  Identities=20%  Similarity=0.504  Sum_probs=28.1

Q ss_pred             EEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         72 VIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        72 VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      |+|||||..|+-+|..|++.|. +|+|+++.
T Consensus         2 VvVIG~G~AGl~aA~~la~~G~-~V~viek~   31 (472)
T 2e5v_A            2 IYIIGSGIAGLSAGVALRRAGK-KVTLISKR   31 (472)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred             EEEECCCHHHHHHHHHHHHCCC-CEEEEeCC
Confidence            8999999999999999999997 69999975

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=97.87  E-value=4.3e-05  Score=67.45  Aligned_cols=81  Identities=17%  Similarity=0.112  Sum_probs=55.7

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCC--------cCCCCHH---HH----HHHHHcCcEEEeCCcceEEE
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCT--------NIRAVPE---EV----QLAWEEKCEFLPFMSPVQVD  134 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~--------~~~~~~~---~~----~~~~~~gv~~~~~~~~~~i~  134 (183)
                      ++|+|||||..|+.+|..|++.|. +|+|+++++..        .++....   .+    ..+.+.|+++++++.+..  
T Consensus       374 ~~vvIIGgG~AGl~aA~~l~~~g~-~V~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~--  450 (671)
T 1ps9_A          374 KNLAVVGAGPAGLAFAINAAARGH-QVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTGVTLKLNHTVTA--  450 (671)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTC-EEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHHHTCEEEESCCCCS--
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCC-eEEEEeCCCCCCCeeeccccCCCHHHHHHHHHHHHHHHHHcCCEEEeCcEecH--
Confidence            469999999999999999999997 79999986532        1122111   11    223456788877654310  


Q ss_pred             ccCCcEEEEEEEEeeecCCCCeecCCCceEEE-ECCEEEEcccccccCC
Q psy16200        135 VKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKL-KANYIISAFGSTLLDN  182 (183)
Q Consensus       135 ~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i-~~D~Vi~a~G~~p~~~  182 (183)
                                                 .  .+ .+|.||+|+|.+|+..
T Consensus       451 ---------------------------~--~~~~~d~lviAtG~~p~~~  470 (671)
T 1ps9_A          451 ---------------------------D--QLQAFDETILASGIVPRTP  470 (671)
T ss_dssp             ---------------------------S--SSCCSSEEEECCCEEECCC
T ss_pred             ---------------------------H--HhhcCCEEEEccCCCcCCC
Confidence                                       0  12 7899999999988653

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=97.86  E-value=6.2e-05  Score=60.91  Aligned_cols=32  Identities=22%  Similarity=0.274  Sum_probs=28.5

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      ++|+|||||.+|+-+|..|+ .|. +|+|+++++
T Consensus        10 ~dv~IIGaGi~Gls~A~~La-~G~-~V~vlE~~~   41 (381)
T 3nyc_A           10 ADYLVIGAGIAGASTGYWLS-AHG-RVVVLEREA   41 (381)
T ss_dssp             CSEEEECCSHHHHHHHHHHT-TTS-CEEEECSSS
T ss_pred             CCEEEECCcHHHHHHHHHHh-CCC-CEEEEECCC
Confidence            45999999999999999999 587 699999863

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.86  E-value=9.7e-05  Score=62.17  Aligned_cols=32  Identities=22%  Similarity=0.370  Sum_probs=29.1

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      .+|+|||||..|+.+|..|++.|. +|+|+++.
T Consensus         6 ~dvvIIG~G~aGl~aA~~l~~~g~-~V~lie~~   37 (458)
T 1lvl_A            6 TTLLIIGGGPGGYVAAIRAGQLGI-PTVLVEGQ   37 (458)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTC-CEEEECSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCC-EEEEEccC
Confidence            359999999999999999999997 69999983

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=97.85  E-value=9e-05  Score=68.12  Aligned_cols=104  Identities=19%  Similarity=0.192  Sum_probs=66.1

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCCc---C-------CCC-HHH-H----HHHHH-cCcEEEeCCcceEE
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTN---I-------RAV-PEE-V----QLAWE-EKCEFLPFMSPVQV  133 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~~---~-------~~~-~~~-~----~~~~~-~gv~~~~~~~~~~i  133 (183)
                      +|+|||||..|+.+|..|++.|. +|+|+++.+...   .       +.. ..+ .    ..+.+ .++++++++.+.++
T Consensus       130 dVvVIGaGpAGl~AA~~la~~G~-~V~lie~~~~~GG~~~~~~k~~i~~~~~~~~~~~~~~~l~~~~~v~~~~~~~V~~i  208 (965)
T 2gag_A          130 DVLVVGAGPAGLAAAREASRSGA-RVMLLDERAEAGGTLLDTAGEQIDGMDSSAWIEQVTSELAEAEETTHLQRTTVFGS  208 (965)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSSSSGGGGGSSCCEETTEEHHHHHHHHHHHHHHSTTEEEESSEEEEEE
T ss_pred             CEEEECCCHHHHHHHHHHHhCCC-cEEEEeCCCCCCceeccCCccccCCCCHHHHHHHHHHHHhhcCCcEEEeCCEEEee
Confidence            59999999999999999999997 699999864321   1       000 111 1    22334 48999998888877


Q ss_pred             EccCCcEEEEEEEEeeecCCCCeecC-----CCceEEEECCEEEEcccccccC
Q psy16200        134 DVKDNKIAGMQFNRTEQNEKGEWVED-----EEQRIKLKANYIISAFGSTLLD  181 (183)
Q Consensus       134 ~~~~~~v~~v~~~~~~~~~~~~~~~~-----~g~~~~i~~D~Vi~a~G~~p~~  181 (183)
                      .. ++.+..+..  .   .+......     .+....+.+|.||+|+|..|..
T Consensus       209 ~~-~~~~~~v~~--~---~~~~~v~~~~~~~~~~~~~i~~d~lVlATGs~p~~  255 (965)
T 2gag_A          209 YD-ANYLIAAQR--R---TVHLDGPSGPGVSRERIWHIRAKQVVLATGAHERP  255 (965)
T ss_dssp             ET-TTEEEEEEE--C---STTCSSCCCTTCCSEEEEEEEEEEEEECCCEEECC
T ss_pred             ec-CCceeeeEe--e---cccccccccccCCCCceEEEECCEEEECCCCccCC
Confidence            63 344432221  0   11110100     1223478999999999998754

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=97.85  E-value=0.00014  Score=63.09  Aligned_cols=31  Identities=23%  Similarity=0.323  Sum_probs=28.7

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      +|+|||||.+|+-+|..|++.|. +|+|+++.
T Consensus        34 DVvVIGgGi~G~~~A~~La~rG~-~V~LlE~~   64 (571)
T 2rgh_A           34 DLLIIGGGITGAGVAVQAAASGI-KTGLIEMQ   64 (571)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCC-cEEEEeCC
Confidence            49999999999999999999997 69999974

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=97.83  E-value=8.6e-05  Score=62.64  Aligned_cols=32  Identities=28%  Similarity=0.421  Sum_probs=29.4

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      +|+|||||..|+.+|..|++.|. +|+|++++.
T Consensus         5 DVvVIGgG~aGl~aA~~la~~G~-~V~liEk~~   36 (476)
T 3lad_A            5 DVIVIGAGPGGYVAAIKSAQLGL-KTALIEKYK   36 (476)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTC-CEEEEECCB
T ss_pred             CEEEECcCHHHHHHHHHHHhCCC-EEEEEeCCC
Confidence            49999999999999999999997 699999874

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=97.81  E-value=0.00017  Score=65.07  Aligned_cols=33  Identities=21%  Similarity=0.329  Sum_probs=29.5

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      +|+|||||.+|+.+|..|++.|..+|+|++++.
T Consensus         6 dVvIIGgGi~Gls~A~~La~~G~~~V~vlE~~~   38 (830)
T 1pj5_A            6 RIVIIGAGIVGTNLADELVTRGWNNITVLDQGP   38 (830)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCCcEEEEeCCC
Confidence            599999999999999999999952599999864

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=97.80  E-value=0.00021  Score=61.40  Aligned_cols=32  Identities=28%  Similarity=0.341  Sum_probs=29.5

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      +|+|||||..|+.+|..|.+.|. +|+|+++++
T Consensus        18 dVvIIGaG~aGl~aA~~L~~~G~-~v~iiE~~~   49 (542)
T 1w4x_A           18 DVLVVGAGFSGLYALYRLRELGR-SVHVIETAG   49 (542)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-CEEEECSSS
T ss_pred             CEEEECccHHHHHHHHHHHhCCC-CEEEEeCCC
Confidence            59999999999999999999997 699999864

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=97.77  E-value=0.00015  Score=62.10  Aligned_cols=31  Identities=29%  Similarity=0.472  Sum_probs=28.7

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      +|+|||||..|+.+|..|+++|. +|+||++.
T Consensus        34 DVvVIGgGpaGl~aA~~la~~G~-~V~liEk~   64 (519)
T 3qfa_A           34 DLIIIGGGSGGLAAAKEAAQYGK-KVMVLDFV   64 (519)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-CEEEECCC
T ss_pred             CEEEECCCHHHHHHHHHHHhCCC-eEEEEecc
Confidence            59999999999999999999997 69999974

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=97.76  E-value=0.00019  Score=61.84  Aligned_cols=31  Identities=19%  Similarity=0.374  Sum_probs=28.2

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      .|+|||||..|+-+|..|++ |. +|+|+++..
T Consensus        10 DVvVVG~G~AGl~aAl~la~-G~-~V~vlEk~~   40 (540)
T 1chu_A           10 DVLIIGSGAAGLSLALRLAD-QH-QVIVLSKGP   40 (540)
T ss_dssp             SEEEECCSHHHHHHHHHHTT-TS-CEEEECSSC
T ss_pred             CEEEECccHHHHHHHHHHhc-CC-cEEEEECCC
Confidence            49999999999999999999 97 699999854

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=97.76  E-value=0.00011  Score=62.35  Aligned_cols=30  Identities=33%  Similarity=0.559  Sum_probs=28.1

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEe
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFR  101 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r  101 (183)
                      +|+|||||..|+.+|..|+++|. +|+||++
T Consensus         8 DvvVIG~G~aGl~aA~~la~~G~-~V~liEk   37 (488)
T 3dgz_A            8 DLLVIGGGSGGLACAKEAAQLGK-KVAVADY   37 (488)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-CEEEECC
T ss_pred             CEEEECCCHHHHHHHHHHHhCCC-eEEEEEe
Confidence            59999999999999999999997 6999986

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=97.76  E-value=0.00013  Score=61.15  Aligned_cols=32  Identities=34%  Similarity=0.463  Sum_probs=29.4

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      +|+|||||..|+.+|..|++.|. +|+|+++++
T Consensus         3 dvvIIG~G~aGl~aA~~l~~~g~-~V~lie~~~   34 (455)
T 2yqu_A            3 DLLVIGAGPGGYVAAIRAAQLGM-KVGVVEKEK   34 (455)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-CEEEEESSS
T ss_pred             CEEEECCChhHHHHHHHHHHCCC-eEEEEeCCC
Confidence            49999999999999999999997 699999874

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=97.74  E-value=0.00017  Score=62.18  Aligned_cols=33  Identities=24%  Similarity=0.272  Sum_probs=30.0

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC  104 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~  104 (183)
                      +|+|||||.+|+-+|..|++.|. +|+|+++++.
T Consensus        28 dVlIVGaGpaGl~~A~~La~~G~-~V~vlEr~~~   60 (549)
T 2r0c_A           28 DVLILGGGPVGMALALDLAHRQV-GHLVVEQTDG   60 (549)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-CEEEECSSCS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCC-CEEEEeCCCC
Confidence            59999999999999999999998 6999998643

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=97.74  E-value=0.00011  Score=61.89  Aligned_cols=33  Identities=33%  Similarity=0.429  Sum_probs=29.8

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      .+|+|||||..|+.+|..|++.|. +|+|++++.
T Consensus         7 ~dvvIIG~G~aG~~aA~~l~~~g~-~V~lie~~~   39 (464)
T 2eq6_A            7 YDLIVIGTGPGGYHAAIRAAQLGL-KVLAVEAGE   39 (464)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTC-CEEEEESSC
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCC-eEEEEeCCC
Confidence            359999999999999999999997 699999864

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=97.73  E-value=0.00045  Score=60.18  Aligned_cols=31  Identities=19%  Similarity=0.379  Sum_probs=28.8

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      .|+|||||..|+-+|..|++.|. +|+|+++.
T Consensus         9 DVvVVGaG~AGl~AA~~la~~G~-~V~vlEK~   39 (588)
T 2wdq_A            9 DAVVIGAGGAGMRAALQISQSGQ-TCALLSKV   39 (588)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCC-cEEEEecC
Confidence            59999999999999999999997 69999984

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=97.71  E-value=6.8e-05  Score=62.00  Aligned_cols=31  Identities=29%  Similarity=0.473  Sum_probs=28.7

Q ss_pred             eEEEEcCChhHHHHHHHHHHc--CCceEEEEEee
Q psy16200         71 TVIVLGAGDTAFDCATSALRC--GANKVLVVFRK  102 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~--G~~~V~lv~r~  102 (183)
                      +|+|||||.+|+-+|..|++.  |. +|+|+++.
T Consensus        38 dVvIIGaGi~Gls~A~~La~~~pG~-~V~vlE~~   70 (405)
T 3c4n_A           38 DIVVIGAGRMGAACAFYLRQLAPGR-SLLLVEEG   70 (405)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTS-CEEEECSS
T ss_pred             CEEEECCcHHHHHHHHHHHhcCCCC-eEEEEeCC
Confidence            599999999999999999999  97 69999974

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=97.71  E-value=0.00016  Score=63.39  Aligned_cols=51  Identities=14%  Similarity=0.235  Sum_probs=38.1

Q ss_pred             CcEEEeCCcceEEEccC--CcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccccccC
Q psy16200        121 KCEFLPFMSPVQVDVKD--NKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLD  181 (183)
Q Consensus       121 gv~~~~~~~~~~i~~~~--~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~  181 (183)
                      |+++++++.+.++..++  ++++++++.+.          .+|+..++.||.||+|+|..|++
T Consensus       274 nv~v~~~~~V~~i~~~~~~~~v~GV~~~~~----------~~g~~~~i~A~~VIlaaG~~~s~  326 (623)
T 3pl8_A          274 RFNLFPAVACERVVRNALNSEIESLHIHDL----------ISGDRFEIKADVYVLTAGAVHNT  326 (623)
T ss_dssp             EEEEECSEEEEEEEECTTSSCEEEEEEEET----------TTCCEEEECEEEEEECSCTTHHH
T ss_pred             CEEEEeCCEEEEEEEECCCCEEEEEEEEEc----------CCCcEEEEECCEEEEcCCCcCCH
Confidence            57778888888876542  36777777531          35677889999999999998864

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=97.70  E-value=3.7e-05  Score=65.04  Aligned_cols=85  Identities=18%  Similarity=0.289  Sum_probs=57.1

Q ss_pred             cceEEEEcCChhHHHHHHHHHHcC--CceEEEEEeecCCc-------CCCCH--HH-H----HHHHHcCcEEEeCCcceE
Q psy16200         69 KGTVIVLGAGDTAFDCATSALRCG--ANKVLVVFRKGCTN-------IRAVP--EE-V----QLAWEEKCEFLPFMSPVQ  132 (183)
Q Consensus        69 ~~~VvViGgG~~g~e~A~~l~~~G--~~~V~lv~r~~~~~-------~~~~~--~~-~----~~~~~~gv~~~~~~~~~~  132 (183)
                      +.+|+|||||..|+.+|..|.+.|  . +|+|+++.+...       .|...  .+ +    ..+.+.|++++.+..+. 
T Consensus         6 ~~~vvIIG~G~aGl~aA~~l~~~g~~~-~V~vie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~-   83 (460)
T 1cjc_A            6 TPQICVVGSGPAGFYTAQHLLKHHSRA-HVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFYGNVEVG-   83 (460)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCSSC-EEEEECSSSSSCTHHHHTSCTTCGGGGGHHHHHHHHHTSTTEEEEBSCCBT-
T ss_pred             CceEEEECcCHHHHHHHHHHHhcCCCC-CEEEEeCCCcCCceeecccCCCCccHHHHHHHHHHHHHhCCcEEEeeeEEe-
Confidence            357999999999999999999998  6 699999875431       12221  11 1    22345688888776541 


Q ss_pred             EEccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccccc
Q psy16200        133 VDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTL  179 (183)
Q Consensus       133 i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p  179 (183)
                           ..|   ++              .+  ..+.+|.||+|+|..|
T Consensus        84 -----~~V---~~--------------~~--~~~~~d~lVlAtGs~~  106 (460)
T 1cjc_A           84 -----RDV---TV--------------QE--LQDAYHAVVLSYGAED  106 (460)
T ss_dssp             -----TTB---CH--------------HH--HHHHSSEEEECCCCCE
T ss_pred             -----eEE---Ee--------------cc--ceEEcCEEEEecCcCC
Confidence                 111   11              01  1357999999999885

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=97.68  E-value=0.00027  Score=61.98  Aligned_cols=31  Identities=23%  Similarity=0.338  Sum_probs=28.7

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      .|+|||||..|+-+|..|++.|. +|+|+++.
T Consensus        20 DVvVVG~G~AGl~AAl~aa~~G~-~V~vlEK~   50 (621)
T 2h88_A           20 DAVVVGAGGAGLRAAFGLSEAGF-NTACVTKL   50 (621)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred             CEEEECccHHHHHHHHHHHHCCC-cEEEEecc
Confidence            49999999999999999999997 69999974

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=97.67  E-value=4.5e-05  Score=67.57  Aligned_cols=33  Identities=24%  Similarity=0.332  Sum_probs=30.2

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      ++|+|||||..|+.+|..|++.|. +|+|+++++
T Consensus       392 ~~VvIIGgG~AGl~aA~~La~~G~-~V~liE~~~  424 (690)
T 3k30_A          392 ARVLVVGAGPSGLEAARALGVRGY-DVVLAEAGR  424 (690)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTC-EEEEECSSS
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCC-eEEEEecCC
Confidence            469999999999999999999997 699999864

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=97.65  E-value=0.00033  Score=59.21  Aligned_cols=30  Identities=33%  Similarity=0.572  Sum_probs=27.9

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEe
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFR  101 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r  101 (183)
                      +|+|||||..|+.+|..|+++|. +|+||++
T Consensus        11 DvvVIGgG~aGl~aA~~la~~G~-~V~liEk   40 (483)
T 3dgh_A           11 DLIVIGGGSAGLACAKEAVLNGA-RVACLDF   40 (483)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-CEEEECC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCC-EEEEEEe
Confidence            59999999999999999999997 6999984

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=97.64  E-value=4.8e-05  Score=70.30  Aligned_cols=89  Identities=17%  Similarity=0.213  Sum_probs=59.4

Q ss_pred             cceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCC------cCCC---CHH----HHHHHHHcCcEEEeCCcceEEEc
Q psy16200         69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCT------NIRA---VPE----EVQLAWEEKCEFLPFMSPVQVDV  135 (183)
Q Consensus        69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~------~~~~---~~~----~~~~~~~~gv~~~~~~~~~~i~~  135 (183)
                      +++|+|||||..|+.+|..|++.|.++|+|+++.+..      ..|.   ...    ....+.+.||+|++++.+..   
T Consensus       187 ~~~VvVIGgGpAGl~aA~~L~~~G~~~Vtv~E~~~~~GG~~~~~ip~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~---  263 (1025)
T 1gte_A          187 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELMKDLGVKIICGKSLSE---  263 (1025)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHHHHTSCTTTSCHHHHHHHHHHHHTTTCEEEESCCBST---
T ss_pred             CCEEEEECccHHHHHHHHHHHhcCCCcEEEEeCCCCCCccccccCCcccCCHHHHHHHHHHHHHCCcEEEcccEecc---
Confidence            3469999999999999999999996259999986431      0121   111    22345678999988876531   


Q ss_pred             cCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccc-ccc
Q psy16200        136 KDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGS-TLL  180 (183)
Q Consensus       136 ~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~-~p~  180 (183)
                        ..+   ++             .++  .++.+|.||+|+|. .|.
T Consensus       264 --~~v---~~-------------~~~--~~~~~d~vvlAtGa~~p~  289 (1025)
T 1gte_A          264 --NEI---TL-------------NTL--KEEGYKAAFIGIGLPEPK  289 (1025)
T ss_dssp             --TSB---CH-------------HHH--HHTTCCEEEECCCCCEEC
T ss_pred             --ceE---Eh-------------hhc--CccCCCEEEEecCCCCCC
Confidence              111   11             011  13578999999998 465

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=97.63  E-value=0.0006  Score=60.25  Aligned_cols=31  Identities=19%  Similarity=0.309  Sum_probs=28.6

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      .|+|||||..|+-+|..|++.|. +|+|+++.
T Consensus         7 DVvVIGgG~AGL~AAl~aae~G~-~V~vlEK~   37 (660)
T 2bs2_A            7 DSLVIGGGLAGLRAAVATQQKGL-STIVLSLI   37 (660)
T ss_dssp             SEEEECCSHHHHHHHHHHHTTTC-CEEEECSS
T ss_pred             cEEEECchHHHHHHHHHHHHCCC-cEEEEecc
Confidence            49999999999999999999997 69999974

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=97.58  E-value=0.00052  Score=58.35  Aligned_cols=30  Identities=30%  Similarity=0.428  Sum_probs=27.9

Q ss_pred             ceEEEEcCChhHHHHHHHHHH-cCCceEEEEE
Q psy16200         70 GTVIVLGAGDTAFDCATSALR-CGANKVLVVF  100 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~-~G~~~V~lv~  100 (183)
                      .+|+|||||..|+.+|..|++ .|. +|+||+
T Consensus         8 ~dvvVIGgG~aGl~aA~~la~~~G~-~V~liE   38 (495)
T 2wpf_A            8 FDLVVIGAGSGGLEAGWNAATLYGK-RVAVVD   38 (495)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHCC-CEEEEE
T ss_pred             cCEEEECCChhHHHHHHHHHHhcCC-eEEEEe
Confidence            359999999999999999999 997 699999

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=97.58  E-value=0.00028  Score=59.56  Aligned_cols=31  Identities=29%  Similarity=0.424  Sum_probs=28.8

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      +|+|||||..|+.+|..|+++|. +|+|+++.
T Consensus        22 dVvIIGgG~aGl~aA~~la~~G~-~V~liE~~   52 (478)
T 3dk9_A           22 DYLVIGGGSGGLASARRAAELGA-RAAVVESH   52 (478)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred             CEEEECCCHHHHHHHHHHHhCCC-eEEEEecC
Confidence            59999999999999999999997 69999975

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=97.57  E-value=6e-05  Score=56.55  Aligned_cols=31  Identities=16%  Similarity=0.337  Sum_probs=29.2

Q ss_pred             EEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         72 VIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        72 VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      |+|||||..|+-+|..|+++|. +|+|+++++
T Consensus         5 V~IIGaGpaGL~aA~~La~~G~-~V~v~Ek~~   35 (336)
T 3kkj_A            5 IAIIGTGIAGLSAAQALTAAGH-QVHLFDKSR   35 (336)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEECSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCC-CEEEEECCC
Confidence            9999999999999999999998 699999864

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=97.56  E-value=0.00055  Score=59.45  Aligned_cols=31  Identities=29%  Similarity=0.409  Sum_probs=28.6

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEe
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFR  101 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r  101 (183)
                      .+|+|||||..|+.+|..|+++|. +|+++++
T Consensus       108 ~dvvVIG~GpAGl~aA~~l~~~g~-~v~liE~  138 (598)
T 2x8g_A          108 YDLIVIGGGSGGLAAGKEAAKYGA-KTAVLDY  138 (598)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTC-CEEEECC
T ss_pred             ccEEEECCCccHHHHHHHHHhCCC-eEEEEec
Confidence            359999999999999999999997 6999986

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=97.56  E-value=0.00015  Score=61.44  Aligned_cols=31  Identities=23%  Similarity=0.305  Sum_probs=28.9

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      +|+|||||..|+.+|..|+++|. +|+|+++.
T Consensus        28 DVvVIGgG~aGl~aA~~la~~G~-~V~liEk~   58 (484)
T 3o0h_A           28 DLFVIGSGSGGVRAARLAGALGK-RVAIAEEY   58 (484)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred             CEEEECcCHHHHHHHHHHHhCcC-EEEEEeCC
Confidence            59999999999999999999997 69999983

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=97.54  E-value=0.00031  Score=61.64  Aligned_cols=32  Identities=19%  Similarity=0.312  Sum_probs=29.2

Q ss_pred             eEEEEcCChhHHHHHHHHHH-cCCceEEEEEeec
Q psy16200         71 TVIVLGAGDTAFDCATSALR-CGANKVLVVFRKG  103 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~-~G~~~V~lv~r~~  103 (183)
                      +|+|||||.+|+-+|..|++ .|. +|+|+++++
T Consensus        34 dVlIVGaGpaGL~~A~~La~~~G~-~V~viEr~~   66 (639)
T 2dkh_A           34 DVLIVGCGPAGLTLAAQLAAFPDI-RTCIVEQKE   66 (639)
T ss_dssp             EEEEECCSHHHHHHHHHHTTCTTS-CEEEECSSS
T ss_pred             cEEEECcCHHHHHHHHHHHHhCCC-CEEEEeCCC
Confidence            59999999999999999999 898 699999754

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=97.53  E-value=0.00052  Score=58.25  Aligned_cols=29  Identities=24%  Similarity=0.401  Sum_probs=27.4

Q ss_pred             eEEEEcCChhHHHHHHHHHH-cCCceEEEEE
Q psy16200         71 TVIVLGAGDTAFDCATSALR-CGANKVLVVF  100 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~-~G~~~V~lv~  100 (183)
                      +|+|||||..|+.+|..|++ .|. +|+|++
T Consensus         5 dvvVIGgG~aGl~aA~~la~~~G~-~V~liE   34 (490)
T 1fec_A            5 DLVVIGAGSGGLEAGWNAASLHKK-RVAVID   34 (490)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHCC-CEEEEE
T ss_pred             cEEEECCCHHHHHHHHHHHHHcCC-EEEEEe
Confidence            59999999999999999999 997 699999

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=97.53  E-value=0.00046  Score=58.11  Aligned_cols=31  Identities=26%  Similarity=0.445  Sum_probs=29.0

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      +|+|||||..|+.+|..|++.|. +|+|++++
T Consensus         6 dVvIIGgG~aGl~aA~~l~~~g~-~V~liE~~   36 (463)
T 2r9z_A            6 DLIAIGGGSGGLAVAEKAAAFGK-RVALIESK   36 (463)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred             cEEEECCCHHHHHHHHHHHhCCC-cEEEEcCC
Confidence            59999999999999999999997 69999986

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=97.53  E-value=0.00028  Score=59.32  Aligned_cols=31  Identities=23%  Similarity=0.300  Sum_probs=28.7

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      +|+|||||..|+.+|..|+++|. +|+++++.
T Consensus         7 DVvVIGaG~aGl~aA~~la~~G~-~V~liEk~   37 (463)
T 4dna_A            7 DLFVIGGGSGGVRSGRLAAALGK-KVAIAEEF   37 (463)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTC-CEEEEESS
T ss_pred             cEEEECcCHHHHHHHHHHHhCCC-EEEEEeCC
Confidence            59999999999999999999997 69999983

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.52  E-value=0.00017  Score=61.40  Aligned_cols=32  Identities=34%  Similarity=0.473  Sum_probs=29.3

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      +|+|||||..|+.+|..|++.|. +|+|++++.
T Consensus         4 dVvIIGgG~aGl~aA~~l~~~g~-~V~liE~~~   35 (500)
T 1onf_A            4 DLIVIGGGSGGMAAARRAARHNA-KVALVEKSR   35 (500)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTC-CEEEEESSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC-cEEEEeCCC
Confidence            49999999999999999999997 699999863

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=97.51  E-value=5.9e-05  Score=63.70  Aligned_cols=83  Identities=18%  Similarity=0.137  Sum_probs=54.8

Q ss_pred             ceEEEEcCChhHHHHHHHHHH-c------CCceEEEEEeecCCc-------CCCC---HHHH----HHHHHcCcEEEeCC
Q psy16200         70 GTVIVLGAGDTAFDCATSALR-C------GANKVLVVFRKGCTN-------IRAV---PEEV----QLAWEEKCEFLPFM  128 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~-~------G~~~V~lv~r~~~~~-------~~~~---~~~~----~~~~~~gv~~~~~~  128 (183)
                      .+|+|||||..|+.+|..|++ .      |. +|+|+++.+...       .|..   .+..    ..+.+.|++|+.+.
T Consensus         4 ~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~-~V~lie~~~~~gg~~~~gv~p~~~~~~~~~~~~~~~~~~~~v~~~~~v   82 (456)
T 1lqt_A            4 YYIAIVGSGPSAFFAAASLLKAADTTEDLDM-AVDMLEMLPTPWGLVRSGVAPDHPKIKSISKQFEKTAEDPRFRFFGNV   82 (456)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCE-EEEEEESSSSCSTHHHHTSCTTCTGGGGGHHHHHHHHTSTTEEEEESC
T ss_pred             CEEEEECcCHHHHHHHHHHHhhCccccCCCC-eEEEEecCCCCCCccccccCCCCCCHHHHHHHHHHHHhcCCCEEEeeE
Confidence            469999999999999999999 7      86 799999875421       0111   1111    22345678888774


Q ss_pred             cceEEEccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEccccc
Q psy16200        129 SPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGST  178 (183)
Q Consensus       129 ~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~  178 (183)
                      .+    +  ..|   ++             .++   .+.+|.||+|+|..
T Consensus        83 ~v----~--~~v---~~-------------~~~---~~~~d~lViAtG~~  107 (456)
T 1lqt_A           83 VV----G--EHV---QP-------------GEL---SERYDAVIYAVGAQ  107 (456)
T ss_dssp             CB----T--TTB---CH-------------HHH---HHHSSEEEECCCCC
T ss_pred             EE----C--CEE---EE-------------CCC---eEeCCEEEEeeCCC
Confidence            42    1  112   11             111   36899999999997

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=97.47  E-value=0.001  Score=58.42  Aligned_cols=32  Identities=25%  Similarity=0.420  Sum_probs=28.3

Q ss_pred             eEEEEcCChhHHHHHHHHH---H-cCCceEEEEEeec
Q psy16200         71 TVIVLGAGDTAFDCATSAL---R-CGANKVLVVFRKG  103 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~---~-~G~~~V~lv~r~~  103 (183)
                      .|+|||||..|+-+|..|+   + .|. +|+|+++..
T Consensus        24 DVvVIG~G~AGl~AAl~aa~~~~~~G~-~V~vlEK~~   59 (643)
T 1jnr_A           24 DILIIGGGFSGCGAAYEAAYWAKLGGL-KVTLVEKAA   59 (643)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHHTTTTC-CEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHhhhhhhCCC-eEEEEeCcC
Confidence            4999999999999999999   5 797 699999753

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=97.47  E-value=0.00057  Score=60.42  Aligned_cols=31  Identities=29%  Similarity=0.434  Sum_probs=28.2

Q ss_pred             eEEEEcCChhHHHHHHHHHHc------CCceEEEEEee
Q psy16200         71 TVIVLGAGDTAFDCATSALRC------GANKVLVVFRK  102 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~------G~~~V~lv~r~  102 (183)
                      .|+|||||..|+-+|..|++.      |. +|+|+++.
T Consensus        24 DVvVVG~G~AGL~AAl~aa~~~~~~~pG~-~V~vleK~   60 (662)
T 3gyx_A           24 DLLMVGGGMGNCGAAFEAVRWADKYAPEA-KILLVDKA   60 (662)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHHHHHCTTC-CEEEECSS
T ss_pred             CEEEECCCHHHHHHHHHHHhhccccCCCC-cEEEEEec
Confidence            499999999999999999997      87 69999974

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=97.46  E-value=0.00078  Score=56.49  Aligned_cols=31  Identities=23%  Similarity=0.332  Sum_probs=29.0

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      +|+|||||..|+.+|..|++.|. +|+|++++
T Consensus         6 dvvIIGgG~aGl~aA~~l~~~g~-~V~liE~~   36 (450)
T 1ges_A            6 DYIAIGGGSGGIASINRAAMYGQ-KCALIEAK   36 (450)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTC-CEEEEESS
T ss_pred             CEEEECCCHHHHHHHHHHHhCCC-eEEEEcCC
Confidence            59999999999999999999997 69999986

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=97.36  E-value=0.00099  Score=57.52  Aligned_cols=31  Identities=29%  Similarity=0.399  Sum_probs=28.3

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      .|+|||+|.-|.-+|..++++|. +|.||++.
T Consensus        44 DviVIG~GpaG~~aA~~aa~~G~-kValIE~~   74 (542)
T 4b1b_A           44 DYVVIGGGPGGMASAKEAAAHGA-RVLLFDYV   74 (542)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTC-CEEEECCC
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC-eEEEEecc
Confidence            49999999999999999999997 69999853

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=97.31  E-value=0.00013  Score=61.58  Aligned_cols=33  Identities=24%  Similarity=0.311  Sum_probs=29.6

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      |+|+|||||..|+-+|.+|++.|. +|+|+++++
T Consensus         2 k~VvVIGaG~~GL~aA~~La~~G~-~V~VlEa~~   34 (501)
T 4dgk_A            2 KPTTVIGAGFGGLALAIRLQAAGI-PVLLLEQRD   34 (501)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHTTC-CEEEECCC-
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCC-cEEEEccCC
Confidence            569999999999999999999996 699999754

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=97.25  E-value=0.0015  Score=57.66  Aligned_cols=32  Identities=22%  Similarity=0.341  Sum_probs=29.3

Q ss_pred             eEEEEcCChhHHHHHHHHHH-----cCCceEEEEEeec
Q psy16200         71 TVIVLGAGDTAFDCATSALR-----CGANKVLVVFRKG  103 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~-----~G~~~V~lv~r~~  103 (183)
                      +|+|||||..|+-+|..|++     .|. +|+|+++++
T Consensus        10 dVlIVGaGpaGL~lA~~La~~~~~~~Gi-~v~viE~~~   46 (665)
T 1pn0_A           10 DVLIVGAGPAGLMAARVLSEYVRQKPDL-KVRIIDKRS   46 (665)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHSTTC-CEEEECSSS
T ss_pred             cEEEECcCHHHHHHHHHHhccccccCCC-CEEEEeCCC
Confidence            59999999999999999999     998 699999754

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=97.15  E-value=0.00055  Score=57.64  Aligned_cols=56  Identities=23%  Similarity=0.093  Sum_probs=43.3

Q ss_pred             cceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCCcCCCCHHHHHHHHHcCcEEEeCCc
Q psy16200         69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFMS  129 (183)
Q Consensus        69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~~~~~~~~~~~~~~~~gv~~~~~~~  129 (183)
                      +++|.|||.|-+|+.+|++|+++|. +|+...++...    .....+.+.+.|++++.+..
T Consensus         9 ~k~v~viG~G~sG~s~A~~l~~~G~-~V~~~D~~~~~----~~~~~~~L~~~gi~~~~g~~   64 (451)
T 3lk7_A            9 NKKVLVLGLARSGEAAARLLAKLGA-IVTVNDGKPFD----ENPTAQSLLEEGIKVVCGSH   64 (451)
T ss_dssp             TCEEEEECCTTTHHHHHHHHHHTTC-EEEEEESSCGG----GCHHHHHHHHTTCEEEESCC
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCC-EEEEEeCCccc----CChHHHHHHhCCCEEEECCC
Confidence            4679999999999999999999997 79999875321    12234567778998877654

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=97.07  E-value=0.0019  Score=45.36  Aligned_cols=52  Identities=12%  Similarity=0.066  Sum_probs=39.4

Q ss_pred             CCCcceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCCcCCCCHHHHHHHHHcCcEEEe
Q psy16200         66 PILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLP  126 (183)
Q Consensus        66 ~~~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~~~~~~~~~~~~~~~~gv~~~~  126 (183)
                      ..+.++|+|+|.|.+|..+|..|.+.|. +|+++++..        +.++.+.+.|+.+..
T Consensus         4 ~~~~~~viIiG~G~~G~~la~~L~~~g~-~v~vid~~~--------~~~~~~~~~g~~~i~   55 (140)
T 3fwz_A            4 VDICNHALLVGYGRVGSLLGEKLLASDI-PLVVIETSR--------TRVDELRERGVRAVL   55 (140)
T ss_dssp             CCCCSCEEEECCSHHHHHHHHHHHHTTC-CEEEEESCH--------HHHHHHHHTTCEEEE
T ss_pred             ccCCCCEEEECcCHHHHHHHHHHHHCCC-CEEEEECCH--------HHHHHHHHcCCCEEE
Confidence            3456789999999999999999999997 699998653        233445556666544

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=96.91  E-value=0.0088  Score=50.88  Aligned_cols=53  Identities=11%  Similarity=-0.046  Sum_probs=34.5

Q ss_pred             cCcEEEeCCcceEEEc-cCC------cEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccccccCC
Q psy16200        120 EKCEFLPFMSPVQVDV-KDN------KIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDN  182 (183)
Q Consensus       120 ~gv~~~~~~~~~~i~~-~~~------~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~  182 (183)
                      .+..+++++.+.++.- +.+      ..-.|+..+          ..+|+..++.|+.||+|+|..|+-+
T Consensus       158 ~~~~vrf~~~V~~v~~~~~~~~~~~~~~~~V~~~~----------~~~g~~~~~~ar~vVlatG~~P~iP  217 (501)
T 4b63_A          158 FSDVVAYGEEVVEVIPGKSDPSSSVVDFFTVRSRN----------VETGEISARRTRKVVIAIGGTAKMP  217 (501)
T ss_dssp             TGGGEEESEEEEEEEEECSSTTSSCBCEEEEEEEE----------TTTCCEEEEEEEEEEECCCCEECCC
T ss_pred             cCCceEcceEEEeeccccccccccccceEEEEEec----------CCCceEEEEEeCEEEECcCCCCCCC
Confidence            3456788888888753 111      122233332          1456778899999999999988754

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=96.91  E-value=0.0021  Score=51.80  Aligned_cols=53  Identities=15%  Similarity=0.009  Sum_probs=40.9

Q ss_pred             ceEEEEcCChhHHH-HHHHHHHcCCceEEEEEeecCCcCCCCHHHHHHHHHcCcEEEeCCc
Q psy16200         70 GTVIVLGAGDTAFD-CATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFMS  129 (183)
Q Consensus        70 ~~VvViGgG~~g~e-~A~~l~~~G~~~V~lv~r~~~~~~~~~~~~~~~~~~~gv~~~~~~~  129 (183)
                      ++|.|||.|-+||. +|+.|.++|. +|++.+++..   +   .....+.+.|++++.+..
T Consensus         5 ~~i~~iGiGg~Gms~~A~~L~~~G~-~V~~~D~~~~---~---~~~~~L~~~gi~v~~g~~   58 (326)
T 3eag_A            5 KHIHIIGIGGTFMGGLAAIAKEAGF-EVSGCDAKMY---P---PMSTQLEALGIDVYEGFD   58 (326)
T ss_dssp             CEEEEESCCSHHHHHHHHHHHHTTC-EEEEEESSCC---T---THHHHHHHTTCEEEESCC
T ss_pred             cEEEEEEECHHHHHHHHHHHHhCCC-EEEEEcCCCC---c---HHHHHHHhCCCEEECCCC
Confidence            67999999999997 8999999997 6999986532   1   123456778998876644

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=96.85  E-value=0.001  Score=54.38  Aligned_cols=32  Identities=31%  Similarity=0.459  Sum_probs=29.5

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      +|+|||||.+|+-+|..|++.|. +|+|+++..
T Consensus         6 DVvIIGaG~~Gl~~A~~La~~G~-~V~vlE~~~   37 (397)
T 2oln_A            6 DVVVVGGGPVGLATAWQVAERGH-RVLVLERHT   37 (397)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-CEEEEESSC
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCC
Confidence            49999999999999999999997 699999864

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=96.84  E-value=0.001  Score=54.91  Aligned_cols=32  Identities=22%  Similarity=0.356  Sum_probs=29.3

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      +|+|||||..|+-+|..|++.|. +|+++++++
T Consensus         2 dVvVIGaGiaGLsaA~~La~~G~-~V~vlE~~~   33 (421)
T 3nrn_A            2 RAVVVGAGLGGLLAGAFLARNGH-EIIVLEKSA   33 (421)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred             cEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCC
Confidence            59999999999999999999996 799999853

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=96.83  E-value=0.001  Score=54.71  Aligned_cols=32  Identities=28%  Similarity=0.308  Sum_probs=29.4

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      +|+|||||..|+-+|..|++.|. +|+|+++++
T Consensus         2 dVvVIGaGiaGLsaA~~La~~G~-~V~vlE~~~   33 (425)
T 3ka7_A            2 KTVVIGAGLGGLLSAARLSKAGH-EVEVFERLP   33 (425)
T ss_dssp             EEEEECCBHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred             cEEEECCCHHHHHHHHHHHhCCC-ceEEEeCCC
Confidence            59999999999999999999996 799999853

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=96.79  E-value=0.0011  Score=55.29  Aligned_cols=35  Identities=17%  Similarity=0.223  Sum_probs=30.7

Q ss_pred             CcceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         68 LKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        68 ~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      ...+|+|||||..|+-+|..|++.|. +|+|+++++
T Consensus        21 m~~~ViIVGaGpaGl~~A~~La~~G~-~V~viE~~~   55 (430)
T 3ihm_A           21 MKKRIGIVGAGTAGLHLGLFLRQHDV-DVTVYTDRK   55 (430)
T ss_dssp             --CEEEEECCHHHHHHHHHHHHHTTC-EEEEEESCC
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHCCC-eEEEEcCCC
Confidence            33569999999999999999999997 799999875

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=96.77  E-value=0.0011  Score=54.70  Aligned_cols=32  Identities=28%  Similarity=0.398  Sum_probs=29.2

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      +|+|||||..|+-+|..|++.|. +|+|+++++
T Consensus         3 dVvVIGaG~aGl~aA~~L~~~G~-~V~vlE~~~   34 (431)
T 3k7m_X            3 DAIVVGGGFSGLKAARDLTNAGK-KVLLLEGGE   34 (431)
T ss_dssp             EEEEECCBHHHHHHHHHHHHTTC-CEEEECSSS
T ss_pred             CEEEECCcHHHHHHHHHHHHcCC-eEEEEecCC
Confidence            49999999999999999999997 699999753

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=96.75  E-value=0.0015  Score=55.05  Aligned_cols=35  Identities=23%  Similarity=0.286  Sum_probs=31.1

Q ss_pred             cceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200         69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC  104 (183)
Q Consensus        69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~  104 (183)
                      +.+|+|||||..|+.+|..|++.|. +|+|++++++
T Consensus        33 ~~~v~IiGaG~~Gl~aA~~l~~~g~-~v~vlE~~~~   67 (498)
T 2iid_A           33 PKHVVIVGAGMAGLSAAYVLAGAGH-QVTVLEASER   67 (498)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHHTC-EEEEECSSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCC-eEEEEECCCC
Confidence            4579999999999999999999997 7999998653

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=96.71  E-value=0.0016  Score=52.53  Aligned_cols=31  Identities=32%  Similarity=0.433  Sum_probs=28.9

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      +|+|||||.+|+-+|..|++.|. +|+|+++.
T Consensus         8 dVvVIG~Gi~Gls~A~~La~~G~-~V~vle~~   38 (363)
T 1c0p_A            8 RVVVLGSGVIGLSSALILARKGY-SVHILARD   38 (363)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             CEEEECCCHHHHHHHHHHHhCCC-EEEEEecc
Confidence            59999999999999999999997 79999975

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=96.63  E-value=0.0017  Score=54.66  Aligned_cols=34  Identities=26%  Similarity=0.360  Sum_probs=29.6

Q ss_pred             ceEEEEcCChhHHHHHHHHHHc-CCceEEEEEeecC
Q psy16200         70 GTVIVLGAGDTAFDCATSALRC-GANKVLVVFRKGC  104 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~-G~~~V~lv~r~~~  104 (183)
                      -.|+|||||..|+-+|..|++. |. +|+|++++++
T Consensus        11 ~DVvIIGaGisGLsaA~~L~k~~G~-~V~VlE~~~~   45 (513)
T 4gde_A           11 VDVLVIGAGPTGLGAAKRLNQIDGP-SWMIVDSNET   45 (513)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCCS-CEEEEESSSS
T ss_pred             CCEEEECCcHHHHHHHHHHHhhCCC-CEEEEECCCC
Confidence            4599999999999999999985 76 7999998654

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=96.62  E-value=0.0022  Score=53.53  Aligned_cols=32  Identities=31%  Similarity=0.312  Sum_probs=29.5

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      +|+|||||..|+++|..|++.|. +|+|+++++
T Consensus         3 dViVIGgG~AG~~AA~~la~~G~-~V~liE~~~   34 (443)
T 3g5s_A            3 RVNVVGAGLAGSEAAWTLLRLGV-PVRLFEMRP   34 (443)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTC-CEEEECCTT
T ss_pred             CEEEECchHHHHHHHHHHHHCCC-cEEEEeccC
Confidence            59999999999999999999997 699999765

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=96.59  E-value=0.0018  Score=52.77  Aligned_cols=33  Identities=18%  Similarity=0.236  Sum_probs=29.9

Q ss_pred             eEEEEcCChhHHHHHHHHHHc--CCceEEEEEeecC
Q psy16200         71 TVIVLGAGDTAFDCATSALRC--GANKVLVVFRKGC  104 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~--G~~~V~lv~r~~~  104 (183)
                      +|+|||||..|+.+|..|++.  |. +|+|+++++.
T Consensus         2 dV~IVGaG~aGl~~A~~L~~~~~G~-~V~v~E~~~~   36 (381)
T 3c4a_A            2 KILVIGAGPAGLVFASQLKQARPLW-AIDIVEKNDE   36 (381)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTS-EEEEECSSCT
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCC-CEEEEECCCC
Confidence            599999999999999999999  97 7999998653

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=96.57  E-value=0.0012  Score=54.90  Aligned_cols=33  Identities=18%  Similarity=0.162  Sum_probs=29.9

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcC------CceEEEEEeec
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCG------ANKVLVVFRKG  103 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G------~~~V~lv~r~~  103 (183)
                      .+|+|||||.+|+-+|..|++.|      . +|+|+++++
T Consensus         6 ~dVvIIGaGiaGLsaA~~L~~~G~~~~~~~-~V~vlEa~~   44 (470)
T 3i6d_A            6 KHVVIIGGGITGLAAAFYMEKEIKEKNLPL-ELTLVEASP   44 (470)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHTTTTCSE-EEEEECSSS
T ss_pred             CcEEEECCCHHHHHHHHHHHHhccccCCCC-CEEEEECCC
Confidence            46999999999999999999998      6 799999864

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=96.56  E-value=0.0017  Score=54.20  Aligned_cols=34  Identities=29%  Similarity=0.366  Sum_probs=29.7

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCc-eEEEEEeec
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGAN-KVLVVFRKG  103 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~-~V~lv~r~~  103 (183)
                      .+|+|||||.+|+-+|..|++.|.. +|+|+++++
T Consensus         3 ~dVvVIGaGiaGLsaA~~L~~~G~~~~V~vlEa~~   37 (477)
T 3nks_A            3 RTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSE   37 (477)
T ss_dssp             CEEEEECCBHHHHHHHHHHHTSSSCCEEEEECSSS
T ss_pred             ceEEEECCcHHHHHHHHHHHhCCCCCcEEEEeCCC
Confidence            4699999999999999999999841 699999754

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=96.52  E-value=0.0019  Score=51.93  Aligned_cols=32  Identities=22%  Similarity=0.182  Sum_probs=29.0

Q ss_pred             eEEEEcCChhHHHHHHHHHHcC------CceEEEEEeec
Q psy16200         71 TVIVLGAGDTAFDCATSALRCG------ANKVLVVFRKG  103 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G------~~~V~lv~r~~  103 (183)
                      +|+|||||.+|+-+|..|++.|      . +|+|+++..
T Consensus         2 dVvIIGgGi~Gls~A~~La~~G~~~~p~~-~V~vlE~~~   39 (351)
T 3g3e_A            2 RVVVIGAGVIGLSTALCIHERYHSVLQPL-DIKVYADRF   39 (351)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTTSSSC-EEEEEESSC
T ss_pred             cEEEECCCHHHHHHHHHHHHhccccCCCc-eEEEEECCC
Confidence            5999999999999999999997      6 799999863

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=96.49  E-value=0.0044  Score=47.48  Aligned_cols=32  Identities=31%  Similarity=0.371  Sum_probs=28.5

Q ss_pred             cceEEEEcCChhHHHHHHHHHHcCCceEEEEEe
Q psy16200         69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFR  101 (183)
Q Consensus        69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r  101 (183)
                      +++|+|||||.+|...+..|.+.|+ +|+++.+
T Consensus        31 gk~VLVVGgG~va~~ka~~Ll~~GA-~VtVvap   62 (223)
T 3dfz_A           31 GRSVLVVGGGTIATRRIKGFLQEGA-AITVVAP   62 (223)
T ss_dssp             TCCEEEECCSHHHHHHHHHHGGGCC-CEEEECS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC-EEEEECC
Confidence            3559999999999999999999998 6999954

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=96.46  E-value=0.0045  Score=44.09  Aligned_cols=35  Identities=23%  Similarity=0.269  Sum_probs=30.7

Q ss_pred             CcceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         68 LKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        68 ~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      .+++|+|+|+|.+|..+|..|.+.|. +|+++.|+.
T Consensus        18 ~~~~v~IiG~G~iG~~la~~L~~~g~-~V~vid~~~   52 (155)
T 2g1u_A           18 KSKYIVIFGCGRLGSLIANLASSSGH-SVVVVDKNE   52 (155)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCG
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEECCH
Confidence            44679999999999999999999997 799998754

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=96.45  E-value=0.012  Score=40.97  Aligned_cols=47  Identities=23%  Similarity=0.293  Sum_probs=35.9

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCCcCCCCHHHHHHHHHcCcEEE
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFL  125 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~~~~~~~~~~~~~~~~gv~~~  125 (183)
                      ++|+|+|+|.+|..+|..|.+.|. +|+++.+.+        +..+.+.+.++.+.
T Consensus         7 ~~v~I~G~G~iG~~la~~L~~~g~-~V~~id~~~--------~~~~~~~~~~~~~~   53 (141)
T 3llv_A            7 YEYIVIGSEAAGVGLVRELTAAGK-KVLAVDKSK--------EKIELLEDEGFDAV   53 (141)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTC-CEEEEESCH--------HHHHHHHHTTCEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCC-eEEEEECCH--------HHHHHHHHCCCcEE
Confidence            469999999999999999999997 699997642        23344555665543

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=96.42  E-value=0.0027  Score=52.24  Aligned_cols=34  Identities=15%  Similarity=0.306  Sum_probs=30.3

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcC-CceEEEEEeecC
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCG-ANKVLVVFRKGC  104 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G-~~~V~lv~r~~~  104 (183)
                      .+|+|||||..|+-+|..|++.| . +|++++++++
T Consensus         7 ~~v~IIGaG~aGl~aA~~L~~~g~~-~v~v~E~~~~   41 (424)
T 2b9w_A            7 SRIAIIGAGPAGLAAGMYLEQAGFH-DYTILERTDH   41 (424)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCC-CEEEECSSSC
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCC-cEEEEECCCC
Confidence            46999999999999999999998 6 6999998543

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=96.40  E-value=0.0031  Score=52.96  Aligned_cols=34  Identities=29%  Similarity=0.370  Sum_probs=30.5

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC  104 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~  104 (183)
                      .+|+|||||..|+-+|..|++.|. +|+|++++++
T Consensus        12 ~~v~IIGaG~aGl~aA~~L~~~g~-~v~v~E~~~~   45 (489)
T 2jae_A           12 HSVVVLGGGPAGLCSAFELQKAGY-KVTVLEARTR   45 (489)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCC-CEEEEeccCC
Confidence            469999999999999999999997 7999998653

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=96.38  E-value=0.0032  Score=52.12  Aligned_cols=33  Identities=24%  Similarity=0.267  Sum_probs=29.6

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      +|+|||||..|+-+|..|++.|.++|+|+++..
T Consensus         8 dVvIIGgG~aGlsaA~~La~~G~~~V~vlE~~~   40 (438)
T 3dje_A            8 SLLIVGAGTWGTSTALHLARRGYTNVTVLDPYP   40 (438)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEEESSC
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence            599999999999999999999962599999854

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=96.36  E-value=0.0039  Score=55.54  Aligned_cols=34  Identities=21%  Similarity=0.319  Sum_probs=30.7

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC  104 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~  104 (183)
                      ++|+|||||..|+.+|..|++.|. +|+|+++++.
T Consensus       390 ~~VvIIGgGpAGl~aA~~L~~~G~-~Vtlie~~~~  423 (729)
T 1o94_A          390 DSVLIVGAGPSGSEAARVLMESGY-TVHLTDTAEK  423 (729)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSS
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCCC
Confidence            469999999999999999999997 6999998653

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=96.33  E-value=0.0029  Score=53.78  Aligned_cols=33  Identities=27%  Similarity=0.452  Sum_probs=29.9

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcC-CceEEEEEeec
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCG-ANKVLVVFRKG  103 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G-~~~V~lv~r~~  103 (183)
                      .+|+|||||..|+-+|..|++.| . +|+|+++++
T Consensus         9 ~~VvIIGaG~aGL~AA~~L~~~G~~-~V~VlEa~~   42 (516)
T 1rsg_A            9 KKVIIIGAGIAGLKAASTLHQNGIQ-DCLVLEARD   42 (516)
T ss_dssp             EEEEEECCBHHHHHHHHHHHHTTCC-SEEEECSSS
T ss_pred             CcEEEECCCHHHHHHHHHHHhcCCC-CEEEEeCCC
Confidence            46999999999999999999999 7 699999755

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=96.29  E-value=0.0051  Score=50.69  Aligned_cols=33  Identities=18%  Similarity=0.326  Sum_probs=30.3

Q ss_pred             cceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      +.+|+|||||..|+-+|..|.+.|. +|+|++++
T Consensus        44 ~~~V~IIGAGiaGL~aA~~L~~~G~-~V~VlE~~   76 (376)
T 2e1m_A           44 PKRILIVGAGIAGLVAGDLLTRAGH-DVTILEAN   76 (376)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHTSC-EEEEECSC
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCC-cEEEEecc
Confidence            3569999999999999999999996 79999987

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=96.26  E-value=0.0034  Score=52.66  Aligned_cols=34  Identities=32%  Similarity=0.227  Sum_probs=30.6

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC  104 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~  104 (183)
                      .+|+|||+|..|+-+|..|++.|. +|++++++++
T Consensus        12 ~dvvVIGaG~~GL~aA~~La~~G~-~V~vlE~~~~   45 (453)
T 2bcg_G           12 YDVIVLGTGITECILSGLLSVDGK-KVLHIDKQDH   45 (453)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCC-eEEEEeCCCC
Confidence            359999999999999999999996 6999998754

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=96.26  E-value=0.0043  Score=53.09  Aligned_cols=33  Identities=15%  Similarity=0.367  Sum_probs=29.8

Q ss_pred             ceEEEEcCChhHHHHHHHHHH---cCCceEEEEEeec
Q psy16200         70 GTVIVLGAGDTAFDCATSALR---CGANKVLVVFRKG  103 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~---~G~~~V~lv~r~~  103 (183)
                      .+|+|||||..|+-+|..|++   .|. +|+|+++..
T Consensus         6 ~dVvIVGgG~aGl~aA~~La~~~~~G~-~V~liE~~~   41 (538)
T 2aqj_A            6 KNIVIVGGGTAGWMAASYLVRALQQQA-NITLIESAA   41 (538)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCCSSC-EEEEEECSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhhcCCCC-EEEEECCCC
Confidence            469999999999999999999   897 799999853

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=96.26  E-value=0.0032  Score=53.46  Aligned_cols=34  Identities=24%  Similarity=0.327  Sum_probs=30.3

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC  104 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~  104 (183)
                      .+|+|||||..|+-+|..|++.|. +|+|++++++
T Consensus         5 ~~vvIIGaG~aGL~aA~~L~~~G~-~V~vlE~~~~   38 (520)
T 1s3e_A            5 CDVVVVGGGISGMAAAKLLHDSGL-NVVVLEARDR   38 (520)
T ss_dssp             CSEEEECCBHHHHHHHHHHHHTTC-CEEEECSSSS
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCC-CEEEEeCCCC
Confidence            359999999999999999999997 6999998653

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=96.25  E-value=0.0031  Score=52.70  Aligned_cols=35  Identities=17%  Similarity=0.201  Sum_probs=30.5

Q ss_pred             cceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200         69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC  104 (183)
Q Consensus        69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~  104 (183)
                      ..+|+|||||..|+-+|..|++.|. +|+|++++++
T Consensus        16 ~~~v~iiG~G~~Gl~aa~~l~~~g~-~v~v~E~~~~   50 (478)
T 2ivd_A           16 GMNVAVVGGGISGLAVAHHLRSRGT-DAVLLESSAR   50 (478)
T ss_dssp             -CCEEEECCBHHHHHHHHHHHTTTC-CEEEECSSSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-CEEEEEcCCC
Confidence            3469999999999999999999997 6999998653

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=96.20  E-value=0.0041  Score=51.58  Aligned_cols=33  Identities=27%  Similarity=0.444  Sum_probs=29.8

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      .+|+|||||..|+-+|..|++.|. +|+|+++++
T Consensus         6 ~~v~iiG~G~~Gl~aA~~l~~~g~-~v~v~E~~~   38 (453)
T 2yg5_A            6 RDVAIVGAGPSGLAAATALRKAGL-SVAVIEARD   38 (453)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCC-cEEEEECCC
Confidence            359999999999999999999997 699999864

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=96.18  E-value=0.0035  Score=53.08  Aligned_cols=33  Identities=18%  Similarity=0.233  Sum_probs=28.8

Q ss_pred             ceEEEEcCChhHHHHHHHHHH---cCCceEEEEEeec
Q psy16200         70 GTVIVLGAGDTAFDCATSALR---CGANKVLVVFRKG  103 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~---~G~~~V~lv~r~~  103 (183)
                      .+|+|||||..|+-+|..|++   .|. +|+|+++..
T Consensus         3 ~dVvIVGgG~aGl~~A~~La~~~~~G~-~V~lvE~~~   38 (511)
T 2weu_A            3 RSVVIVGGGTAGWMTASYLKAAFDDRI-DVTLVESGN   38 (511)
T ss_dssp             CEEEEECCHHHHHHHHHHHHHHHGGGS-EEEEEEC--
T ss_pred             ceEEEECCCHHHHHHHHHHHhhcCCCC-EEEEEecCC
Confidence            369999999999999999999   997 799999854

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=96.18  E-value=0.0054  Score=54.17  Aligned_cols=32  Identities=22%  Similarity=0.248  Sum_probs=29.5

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      .+|+|||||..|+-+|..|++.|. +|+|+++.
T Consensus       265 ~DVvIIGgGiaGlsaA~~La~~G~-~V~vlEk~  296 (689)
T 3pvc_A          265 DDIAIIGGGIVSALTALALQRRGA-VVTLYCAD  296 (689)
T ss_dssp             SSEEEECCSHHHHHHHHHHHTTTC-CEEEEESS
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCC-cEEEEeCC
Confidence            359999999999999999999997 69999985

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=96.18  E-value=0.0069  Score=40.38  Aligned_cols=33  Identities=21%  Similarity=0.118  Sum_probs=28.8

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      ++|+|+|+|.+|..++..|.+.|..+|+++.|+
T Consensus         6 ~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~   38 (118)
T 3ic5_A            6 WNICVVGAGKIGQMIAALLKTSSNYSVTVADHD   38 (118)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCSSEEEEEEESC
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCceEEEEeCC
Confidence            579999999999999999999993379888764

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=96.14  E-value=0.0043  Score=51.87  Aligned_cols=33  Identities=18%  Similarity=0.208  Sum_probs=29.8

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcC--CceEEEEEeec
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCG--ANKVLVVFRKG  103 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G--~~~V~lv~r~~  103 (183)
                      .+|+|||||.+|+-+|..|++.|  . +|+++++++
T Consensus         5 ~~v~IiGaG~~Gl~~A~~L~~~g~~~-~v~v~E~~~   39 (475)
T 3lov_A            5 KRLVIVGGGITGLAAAYYAERAFPDL-NITLLEAGE   39 (475)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHHCTTS-EEEEECSSS
T ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCC-CEEEEECCC
Confidence            46999999999999999999998  7 699999854

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=96.12  E-value=0.0036  Score=51.99  Aligned_cols=30  Identities=30%  Similarity=0.279  Sum_probs=28.4

Q ss_pred             eEEEEcCChhHHHHHHHHHHcC-CceEEEEEe
Q psy16200         71 TVIVLGAGDTAFDCATSALRCG-ANKVLVVFR  101 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G-~~~V~lv~r  101 (183)
                      +|+|||||.+|+.+|..|++.| . +|+|+++
T Consensus        25 dVvIIGgGiaGls~A~~La~~G~~-~V~vlE~   55 (448)
T 3axb_A           25 DYVVVGAGVVGLAAAYYLKVWSGG-SVLVVDA   55 (448)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHCS-CEEEEES
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCC-cEEEEcc
Confidence            5999999999999999999999 7 6999998

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=96.11  E-value=0.0054  Score=48.42  Aligned_cols=34  Identities=15%  Similarity=0.315  Sum_probs=30.3

Q ss_pred             cceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      +++|+|||||.+|...+..|.+.|+ +|+++....
T Consensus        13 ~k~VLVVGgG~va~rka~~Ll~~Ga-~VtViap~~   46 (274)
T 1kyq_A           13 DKRILLIGGGEVGLTRLYKLMPTGC-KLTLVSPDL   46 (274)
T ss_dssp             TCEEEEEEESHHHHHHHHHHGGGTC-EEEEEEEEE
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCC-EEEEEcCCC
Confidence            3569999999999999999999998 699998753

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=96.10  E-value=0.0056  Score=50.28  Aligned_cols=33  Identities=15%  Similarity=0.273  Sum_probs=29.9

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC  104 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~  104 (183)
                      +|+|||||..|+.+|..|++.|. +|+++++++.
T Consensus         5 ~v~iiG~G~~Gl~~A~~l~~~g~-~v~v~E~~~~   37 (384)
T 2bi7_A            5 KILIVGAGFSGAVIGRQLAEKGH-QVHIIDQRDH   37 (384)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTC-EEEEEESSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCC-cEEEEEecCC
Confidence            69999999999999999999986 7999998654

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=96.07  E-value=0.006  Score=52.42  Aligned_cols=33  Identities=12%  Similarity=0.279  Sum_probs=29.9

Q ss_pred             ceEEEEcCChhHHHHHHHHHH---cCCceEEEEEeec
Q psy16200         70 GTVIVLGAGDTAFDCATSALR---CGANKVLVVFRKG  103 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~---~G~~~V~lv~r~~  103 (183)
                      .+|+|||||..|+-+|..|++   .|. +|+|+++..
T Consensus        26 ~dVvIVGgG~aGl~aA~~La~~~~~G~-~V~liE~~~   61 (550)
T 2e4g_A           26 DKILIVGGGTAGWMAASYLGKALQGTA-DITLLQAPD   61 (550)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTTTSS-EEEEEECCC
T ss_pred             CcEEEECCCHHHHHHHHHHHhhcCCCC-cEEEEeCCC
Confidence            469999999999999999999   887 799999854

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=96.06  E-value=0.0052  Score=51.74  Aligned_cols=34  Identities=29%  Similarity=0.299  Sum_probs=30.6

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC  104 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~  104 (183)
                      .+|+|||||..|+-+|..|++.|. +|+|++++++
T Consensus        14 ~~v~iiG~G~~Gl~aA~~l~~~g~-~v~v~E~~~~   47 (504)
T 1sez_A           14 KRVAVIGAGVSGLAAAYKLKIHGL-NVTVFEAEGK   47 (504)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTSC-EEEEECSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCC-cEEEEEeCCC
Confidence            469999999999999999999996 7999998654

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=96.01  E-value=0.0052  Score=49.00  Aligned_cols=33  Identities=24%  Similarity=0.344  Sum_probs=28.5

Q ss_pred             eEEEEcCChhHHHHHHHHHH--cCCceEEEEEeecC
Q psy16200         71 TVIVLGAGDTAFDCATSALR--CGANKVLVVFRKGC  104 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~--~G~~~V~lv~r~~~  104 (183)
                      .|+|||||..|+.+|.+|++  .|. +|+|+++.+.
T Consensus        67 DV~IIGaGPAGlsAA~~la~~r~G~-~V~viEk~~~  101 (326)
T 3fpz_A           67 DVIIVGAGSSGLSAAYVIAKNRPDL-KVCIIESSVA  101 (326)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHCTTS-CEEEECSSSS
T ss_pred             CEEEECCCHHHHHHHHHHHHhCCCC-eEEEEECCCC
Confidence            49999999999999999975  487 6999998643

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=96.00  E-value=0.0098  Score=42.14  Aligned_cols=32  Identities=22%  Similarity=0.173  Sum_probs=29.0

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      ++|+|+|+|.+|..++..|.+.|. +|+++.++
T Consensus         4 ~~vlI~G~G~vG~~la~~L~~~g~-~V~vid~~   35 (153)
T 1id1_A            4 DHFIVCGHSILAINTILQLNQRGQ-NVTVISNL   35 (153)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTC-CEEEEECC
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCC-CEEEEECC
Confidence            569999999999999999999997 69999875

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=95.94  E-value=0.006  Score=51.30  Aligned_cols=33  Identities=24%  Similarity=0.338  Sum_probs=29.9

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      .+|+|||||..|+-+|..|++.|. +|+|+++++
T Consensus        40 ~~v~iiGaG~aGl~aA~~l~~~g~-~v~v~E~~~   72 (495)
T 2vvm_A           40 WDVIVIGGGYCGLTATRDLTVAGF-KTLLLEARD   72 (495)
T ss_dssp             EEEEEECCBHHHHHHHHHHHHTTC-CEEEECSSS
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCC-CEEEEeCCC
Confidence            369999999999999999999997 699999864

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=95.92  E-value=0.0068  Score=50.31  Aligned_cols=33  Identities=27%  Similarity=0.347  Sum_probs=29.8

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC  104 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~  104 (183)
                      +|+|||||..|+-+|..|++.|. +|+++++++.
T Consensus        31 dv~IIGaG~aGl~aA~~l~~~g~-~v~v~E~~~~   63 (397)
T 3hdq_A           31 DYLIVGAGFAGSVLAERLASSGQ-RVLIVDRRPH   63 (397)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSS
T ss_pred             CEEEECccHHHHHHHHHHHHCCC-ceEEEeccCC
Confidence            59999999999999999999996 6999998653

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=95.90  E-value=0.0061  Score=50.24  Aligned_cols=34  Identities=24%  Similarity=0.255  Sum_probs=30.1

Q ss_pred             ceEEEEcCChhHHHHHHHHHHc-CCceEEEEEeecC
Q psy16200         70 GTVIVLGAGDTAFDCATSALRC-GANKVLVVFRKGC  104 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~-G~~~V~lv~r~~~  104 (183)
                      .+|+|||||..|+-+|..|++. |. +|+|++++++
T Consensus         8 ~~v~IiGaG~~Gl~aA~~L~~~~g~-~v~v~E~~~~   42 (399)
T 1v0j_A            8 FDLFVVGSGFFGLTIAERVATQLDK-RVLVLERRPH   42 (399)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHSCC-CEEEECSSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHhCCC-CEEEEeCCCC
Confidence            3599999999999999999998 86 6999998653

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=95.88  E-value=0.011  Score=40.55  Aligned_cols=32  Identities=19%  Similarity=0.298  Sum_probs=28.5

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      .+|+|+|+|.+|..+|..|.+.|. +|+++.++
T Consensus         5 m~i~IiG~G~iG~~~a~~L~~~g~-~v~~~d~~   36 (140)
T 1lss_A            5 MYIIIAGIGRVGYTLAKSLSEKGH-DIVLIDID   36 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC-eEEEEECC
Confidence            469999999999999999999996 69999764

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=95.87  E-value=0.0068  Score=51.71  Aligned_cols=33  Identities=12%  Similarity=0.190  Sum_probs=29.7

Q ss_pred             ceEEEEcCChhHHHHHHHHHH------------cCCceEEEEEeec
Q psy16200         70 GTVIVLGAGDTAFDCATSALR------------CGANKVLVVFRKG  103 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~------------~G~~~V~lv~r~~  103 (183)
                      .+|+|||||..|+-+|..|++            .|. +|+|+++..
T Consensus         8 ~dVvIVGgG~aGl~aA~~La~~~~~~~~~~~~~~G~-~V~liE~~~   52 (526)
T 2pyx_A            8 TEIIIVGGGTAGWITAGLLAAEHNVDKGVLAHSPKL-NITLIESPD   52 (526)
T ss_dssp             CEEEEECCHHHHHHHHHHHHHHHHEETTEECSSCSC-EEEEEECSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhhhccccccccCCCCC-eEEEEeCCC
Confidence            469999999999999999999            887 799999854

>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A

Probab=95.84  E-value=0.01  Score=50.48  Aligned_cols=53  Identities=9%  Similarity=-0.059  Sum_probs=40.6

Q ss_pred             cceEEEEcCChhHHH-HHHHHHHcCCceEEEEEeecCCcCCCCHHHHHHHHHcCcEEEeCCc
Q psy16200         69 KGTVIVLGAGDTAFD-CATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFMS  129 (183)
Q Consensus        69 ~~~VvViGgG~~g~e-~A~~l~~~G~~~V~lv~r~~~~~~~~~~~~~~~~~~~gv~~~~~~~  129 (183)
                      .++|.|||-|-+|+. +|++|.++|. +|+....+.      . .....+.+.|+++..+..
T Consensus        22 ~~~v~viGiG~sG~s~~A~~l~~~G~-~V~~~D~~~------~-~~~~~l~~~gi~~~~g~~   75 (494)
T 4hv4_A           22 VRHIHFVGIGGAGMGGIAEVLANEGY-QISGSDLAP------N-SVTQHLTALGAQIYFHHR   75 (494)
T ss_dssp             CCEEEEETTTSTTHHHHHHHHHHTTC-EEEEECSSC------C-HHHHHHHHTTCEEESSCC
T ss_pred             CCEEEEEEEcHhhHHHHHHHHHhCCC-eEEEEECCC------C-HHHHHHHHCCCEEECCCC
Confidence            367999999999997 8999999998 699886532      1 234557788998876643

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=95.72  E-value=0.0076  Score=49.13  Aligned_cols=32  Identities=28%  Similarity=0.446  Sum_probs=29.1

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      +|+|||||..|+-+|..|++.|. +|+++++++
T Consensus         3 ~v~iiG~G~~Gl~~A~~l~~~g~-~v~v~E~~~   34 (367)
T 1i8t_A            3 DYIIVGSGLFGAVCANELKKLNK-KVLVIEKRN   34 (367)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGTC-CEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHhCCC-cEEEEecCC
Confidence            59999999999999999999996 699999864

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=95.65  E-value=0.011  Score=50.01  Aligned_cols=35  Identities=17%  Similarity=0.251  Sum_probs=30.3

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC  104 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~  104 (183)
                      .+|+|||||..|+-+|..|++.|..+|+++++++.
T Consensus        10 ~~v~iiG~G~~Gl~~A~~l~~~g~~~v~v~E~~~~   44 (484)
T 4dsg_A           10 PKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDT   44 (484)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCSEEEEESSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHcCCCCEEEEeCCCC
Confidence            46999999999999999999998336999998643

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=95.60  E-value=0.012  Score=40.53  Aligned_cols=32  Identities=25%  Similarity=0.226  Sum_probs=28.6

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      ++|+|+|+|.+|..++..|.+.|. +|+++.++
T Consensus         7 ~~v~I~G~G~iG~~~a~~l~~~g~-~v~~~d~~   38 (144)
T 2hmt_A            7 KQFAVIGLGRFGGSIVKELHRMGH-EVLAVDIN   38 (144)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTC-CCEEEESC
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            569999999999999999999997 69998764

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=95.56  E-value=0.011  Score=50.10  Aligned_cols=32  Identities=19%  Similarity=0.339  Sum_probs=29.3

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      +|+|||||..|+.+|..|+++|. +|+||+++.
T Consensus        10 DvvVIGgG~aGl~aA~~la~~G~-~V~liE~~~   41 (492)
T 3ic9_A           10 DVAIIGTGTAGMGAYRAAKKHTD-KVVLIEGGA   41 (492)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTCS-CEEEEESSC
T ss_pred             CEEEECCCHHHHHHHHHHHhCCC-cEEEEeCCC
Confidence            59999999999999999999997 699999853

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=95.49  E-value=0.015  Score=52.72  Aligned_cols=34  Identities=24%  Similarity=0.439  Sum_probs=30.5

Q ss_pred             cceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      .++|+|||+|..|+.+|..|++.|. +|+|++++.
T Consensus       278 ~~~v~viG~G~aGl~~A~~l~~~g~-~v~v~E~~~  311 (852)
T 2xag_A          278 TGKVIIIGSGVSGLAAARQLQSFGM-DVTLLEARD  311 (852)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCC-cEEEEEecC
Confidence            3569999999999999999999997 799999754

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=95.48  E-value=0.013  Score=45.39  Aligned_cols=34  Identities=12%  Similarity=0.225  Sum_probs=31.1

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      ++|+|||+|-+|..+|..|++.|..+++++.+..
T Consensus        32 ~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~   65 (249)
T 1jw9_B           32 SRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   65 (249)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence            5699999999999999999999987899998754

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=95.47  E-value=0.016  Score=51.06  Aligned_cols=34  Identities=24%  Similarity=0.439  Sum_probs=30.3

Q ss_pred             cceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      .++|+|||+|..|+.+|..|.+.|. +|+++++++
T Consensus       107 ~~~v~viG~G~~gl~~a~~l~~~g~-~v~~~e~~~  140 (662)
T 2z3y_A          107 TGKVIIIGSGVSGLAAARQLQSFGM-DVTLLEARD  140 (662)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCC-eEEEEecCC
Confidence            3569999999999999999999997 799999754

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=95.35  E-value=0.018  Score=41.90  Aligned_cols=48  Identities=19%  Similarity=0.182  Sum_probs=36.1

Q ss_pred             cceEEEEcCChhHHHHHHHHHHc-CCceEEEEEeecCCcCCCCHHHHHHHHHcCcEEE
Q psy16200         69 KGTVIVLGAGDTAFDCATSALRC-GANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFL  125 (183)
Q Consensus        69 ~~~VvViGgG~~g~e~A~~l~~~-G~~~V~lv~r~~~~~~~~~~~~~~~~~~~gv~~~  125 (183)
                      +++|+|+|+|.+|..+|..|.+. |. +|+++.++.        +....+.+.|+.+.
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~~~g~-~V~vid~~~--------~~~~~~~~~g~~~~   87 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRARYGK-ISLGIEIRE--------EAAQQHRSEGRNVI   87 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHHHHCS-CEEEEESCH--------HHHHHHHHTTCCEE
T ss_pred             CCcEEEECCCHHHHHHHHHHHhccCC-eEEEEECCH--------HHHHHHHHCCCCEE
Confidence            45799999999999999999998 97 699997642        22334455666544

>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}

Probab=95.21  E-value=0.054  Score=46.40  Aligned_cols=55  Identities=13%  Similarity=-0.145  Sum_probs=41.2

Q ss_pred             cceEEEEcCChhHHH-HHHHHHHcCCceEEEEEeecCCcCCCCHHHHHHHHHcCcEEEeCCcc
Q psy16200         69 KGTVIVLGAGDTAFD-CATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFMSP  130 (183)
Q Consensus        69 ~~~VvViGgG~~g~e-~A~~l~~~G~~~V~lv~r~~~~~~~~~~~~~~~~~~~gv~~~~~~~~  130 (183)
                      .++|.+||-|-+||. +|+.|.++|. +|+...++..   +   .....+.+.|+++..+...
T Consensus        19 ~~~i~~iGiGg~Gms~lA~~l~~~G~-~V~~sD~~~~---~---~~~~~L~~~gi~~~~G~~~   74 (524)
T 3hn7_A           19 GMHIHILGICGTFMGSLALLARALGH-TVTGSDANIY---P---PMSTQLEQAGVTIEEGYLI   74 (524)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCCC---T---THHHHHHHTTCEEEESCCG
T ss_pred             CCEEEEEEecHhhHHHHHHHHHhCCC-EEEEECCCCC---c---HHHHHHHHCCCEEECCCCH
Confidence            367999999999997 6899999998 6999876531   1   1234567789988766443

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=95.08  E-value=0.02  Score=51.52  Aligned_cols=33  Identities=33%  Similarity=0.464  Sum_probs=29.8

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      .+|+|||||..|+.+|..|++.|. +|+++++++
T Consensus       337 ~~v~viG~G~~Gl~aA~~l~~~g~-~v~v~E~~~  369 (776)
T 4gut_A          337 KSVIIIGAGPAGLAAARQLHNFGI-KVTVLEAKD  369 (776)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTC-EEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCC-cEEEEeccc
Confidence            469999999999999999999997 799999754

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=94.99  E-value=0.021  Score=48.41  Aligned_cols=33  Identities=30%  Similarity=0.341  Sum_probs=30.0

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC  104 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~  104 (183)
                      +|+|||+|..|+-+|..|++.|. +|.++++++.
T Consensus        22 dv~iiG~G~~g~~~a~~l~~~g~-~v~~~e~~~~   54 (475)
T 3p1w_A           22 DVIILGTGLKECILSGLLSHYGK-KILVLDRNPY   54 (475)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC-cEEEEeccCC
Confidence            59999999999999999999996 6999998754

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=94.93  E-value=0.021  Score=45.94  Aligned_cols=33  Identities=21%  Similarity=0.221  Sum_probs=29.4

Q ss_pred             cceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      .++|+|||+|.+|..+|..++..|. +|+++..+
T Consensus         6 ~~~VaViGaG~MG~giA~~~a~~G~-~V~l~D~~   38 (319)
T 3ado_A            6 AGDVLIVGSGLVGRSWAMLFASGGF-RVKLYDIE   38 (319)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTC-CEEEECSC
T ss_pred             CCeEEEECCcHHHHHHHHHHHhCCC-eEEEEECC
Confidence            4679999999999999999999998 69999764

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=94.81  E-value=0.024  Score=47.13  Aligned_cols=34  Identities=35%  Similarity=0.236  Sum_probs=30.2

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC  104 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~  104 (183)
                      .+|+|||+|..|+-+|..|++.|. +|+++++++.
T Consensus         7 ~~v~iiG~G~~gl~~a~~l~~~g~-~v~~~e~~~~   40 (433)
T 1d5t_A            7 YDVIVLGTGLTECILSGIMSVNGK-KVLHMDRNPY   40 (433)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCC-cEEEEecCCC
Confidence            359999999999999999999996 6999998654

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=94.81  E-value=0.011  Score=41.40  Aligned_cols=33  Identities=21%  Similarity=0.138  Sum_probs=29.2

Q ss_pred             cceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      +++|+|||+|.+|..++..|.+.|.+ |+++.|.
T Consensus        21 ~~~v~iiG~G~iG~~~a~~l~~~g~~-v~v~~r~   53 (144)
T 3oj0_A           21 GNKILLVGNGMLASEIAPYFSYPQYK-VTVAGRN   53 (144)
T ss_dssp             CCEEEEECCSHHHHHHGGGCCTTTCE-EEEEESC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCE-EEEEcCC
Confidence            57899999999999999999999985 8888764

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=94.71  E-value=0.031  Score=46.12  Aligned_cols=35  Identities=26%  Similarity=0.287  Sum_probs=31.0

Q ss_pred             CcceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         68 LKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        68 ~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      .+.+|+|+|+|.+|..+|..+..+|+ +|+++.|+.
T Consensus       183 ~~~kV~ViG~G~iG~~aa~~a~~lGa-~V~v~D~~~  217 (381)
T 3p2y_A          183 KPASALVLGVGVAGLQALATAKRLGA-KTTGYDVRP  217 (381)
T ss_dssp             CCCEEEEESCSHHHHHHHHHHHHHTC-EEEEECSSG
T ss_pred             CCCEEEEECchHHHHHHHHHHHHCCC-EEEEEeCCH
Confidence            34679999999999999999999998 699998764

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=94.71  E-value=0.032  Score=43.78  Aligned_cols=33  Identities=24%  Similarity=0.101  Sum_probs=29.5

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      ++|.|||+|.+|..+|..|++.|. +|+++.++.
T Consensus         5 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~   37 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQTAFHGF-AVTAYDINT   37 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC-eEEEEeCCH
Confidence            579999999999999999999997 799987653

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=94.65  E-value=0.028  Score=46.98  Aligned_cols=34  Identities=26%  Similarity=0.398  Sum_probs=29.3

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      .+|+|||+|..|+-+|..|.+.|..+|+++++++
T Consensus         5 ~~~~iiG~G~~g~~~a~~l~~~g~~~v~~~e~~~   38 (472)
T 1b37_A            5 PRVIVVGAGMSGISAAKRLSEAGITDLLILEATD   38 (472)
T ss_dssp             CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCceEEEeCCC
Confidence            3599999999999999999999852599999753

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=94.62  E-value=0.034  Score=46.84  Aligned_cols=32  Identities=28%  Similarity=0.352  Sum_probs=29.0

Q ss_pred             cceEEEEcCChhHHHHHHHHHHcCCceEEEEEe
Q psy16200         69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFR  101 (183)
Q Consensus        69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r  101 (183)
                      +++|+|||||.+|...+..|.+.|+ +|+++.+
T Consensus        12 ~~~vlVvGgG~va~~k~~~L~~~ga-~V~vi~~   43 (457)
T 1pjq_A           12 DRDCLIVGGGDVAERKARLLLEAGA-RLTVNAL   43 (457)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTB-EEEEEES
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCcC-EEEEEcC
Confidence            3569999999999999999999998 6999975

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=94.62  E-value=0.038  Score=42.79  Aligned_cols=33  Identities=15%  Similarity=0.265  Sum_probs=30.4

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      .+|+|+|+|-+|.++|..|++.|..+++++.+.
T Consensus        29 ~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d   61 (251)
T 1zud_1           29 SQVLIIGLGGLGTPAALYLAGAGVGTLVLADDD   61 (251)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCSEEEEECCC
T ss_pred             CcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            569999999999999999999999899999764

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=94.60  E-value=0.036  Score=45.72  Aligned_cols=35  Identities=31%  Similarity=0.474  Sum_probs=31.9

Q ss_pred             cceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      ..||+|+|+|-.|..+|+.|...|+++|+++.|++
T Consensus       192 ~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~G  226 (388)
T 1vl6_A          192 EVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKG  226 (388)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTE
T ss_pred             CcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCC
Confidence            35799999999999999999999998899999873

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=94.53  E-value=0.041  Score=44.68  Aligned_cols=34  Identities=24%  Similarity=0.328  Sum_probs=31.2

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      .+|+|||+|-.|+.+|.+|++.|..+++++.+..
T Consensus        35 ~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D~   68 (340)
T 3rui_A           35 TKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGT   68 (340)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCB
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCEEEEecCCE
Confidence            4699999999999999999999999999998754

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=94.47  E-value=0.051  Score=40.84  Aligned_cols=34  Identities=24%  Similarity=0.255  Sum_probs=29.7

Q ss_pred             cceEEEEcC-ChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         69 KGTVIVLGA-GDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        69 ~~~VvViGg-G~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      +++|+|.|| |.+|..++..|++.|. +|+++.|+.
T Consensus        21 ~~~ilVtGatG~iG~~l~~~L~~~G~-~V~~~~R~~   55 (236)
T 3e8x_A           21 GMRVLVVGANGKVARYLLSELKNKGH-EPVAMVRNE   55 (236)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSG
T ss_pred             CCeEEEECCCChHHHHHHHHHHhCCC-eEEEEECCh
Confidence            356999997 9999999999999997 799998864

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=94.43  E-value=0.042  Score=43.84  Aligned_cols=35  Identities=17%  Similarity=0.113  Sum_probs=30.3

Q ss_pred             CcceEEEEcCCh-hHHHHHHHHHHcCCceEEEEEeec
Q psy16200         68 LKGTVIVLGAGD-TAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        68 ~~~~VvViGgG~-~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      .+++|+|||+|. +|.-+|..|.+.|+ .|+++++++
T Consensus       164 ~gk~vvVIG~s~iVG~p~A~lL~~~gA-tVtv~hs~t  199 (301)
T 1a4i_A          164 AGRHAVVVGRSKIVGAPMHDLLLWNNA-TVTTCHSKT  199 (301)
T ss_dssp             TTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTTC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHhCCC-eEEEEECCc
Confidence            456799999995 79999999999998 699998654

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=94.42  E-value=0.053  Score=43.55  Aligned_cols=34  Identities=24%  Similarity=0.288  Sum_probs=30.5

Q ss_pred             cceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      +++++|+|+|-+|.-+|..|++.|+++|+++.|.
T Consensus       154 gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~  187 (315)
T 3tnl_A          154 GKKMTICGAGGAATAICIQAALDGVKEISIFNRK  187 (315)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECS
T ss_pred             CCEEEEECCChHHHHHHHHHHHCCCCEEEEEECC
Confidence            4569999999999999999999998789999875

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=94.42  E-value=0.043  Score=45.60  Aligned_cols=34  Identities=26%  Similarity=0.351  Sum_probs=30.4

Q ss_pred             cceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      +.+|+|+|+|.+|..+|..+..+|+ +|+++.++.
T Consensus       190 ~~kV~ViG~G~iG~~aa~~a~~lGa-~V~v~D~~~  223 (405)
T 4dio_A          190 AAKIFVMGAGVAGLQAIATARRLGA-VVSATDVRP  223 (405)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSST
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCC-EEEEEcCCH
Confidence            4679999999999999999999998 699988754

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=94.39  E-value=0.042  Score=43.39  Aligned_cols=32  Identities=28%  Similarity=0.302  Sum_probs=29.1

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      ++|.|||+|.+|..+|..|++.|. +|+++.|+
T Consensus        16 ~~I~VIG~G~mG~~iA~~la~~G~-~V~~~d~~   47 (302)
T 1f0y_A           16 KHVTVIGGGLMGAGIAQVAAATGH-TVVLVDQT   47 (302)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC-eEEEEECC
Confidence            579999999999999999999997 79999875

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=94.36  E-value=0.025  Score=47.27  Aligned_cols=34  Identities=24%  Similarity=0.337  Sum_probs=30.3

Q ss_pred             cceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      +++|+|||.|-+|+.+|++|+++|. +|+....+.
T Consensus         5 ~~~v~viG~G~~G~~~a~~l~~~G~-~v~~~D~~~   38 (439)
T 2x5o_A            5 GKNVVIIGLGLTGLSCVDFFLARGV-TPRVMDTRM   38 (439)
T ss_dssp             TCCEEEECCHHHHHHHHHHHHTTTC-CCEEEESSS
T ss_pred             CCEEEEEeecHHHHHHHHHHHhCCC-EEEEEECCC
Confidence            4679999999999999999999997 699998764

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=94.34  E-value=0.039  Score=43.71  Aligned_cols=35  Identities=20%  Similarity=0.240  Sum_probs=30.5

Q ss_pred             CcceEEEEcCCh-hHHHHHHHHHHcCCceEEEEEeec
Q psy16200         68 LKGTVIVLGAGD-TAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        68 ~~~~VvViGgG~-~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      .+++|+|||+|. +|.-+|..|.+.|+ .|+++++++
T Consensus       158 ~gk~vvVIG~s~iVG~p~A~lL~~~gA-tVtv~hs~t  193 (288)
T 1b0a_A          158 FGLNAVVIGASNIVGRPMSMELLLAGC-TTTVTHRFT  193 (288)
T ss_dssp             TTCEEEEECCCTTTHHHHHHHHHTTTC-EEEEECSSC
T ss_pred             CCCEEEEECCChHHHHHHHHHHHHCCC-eEEEEeCCc
Confidence            456799999996 69999999999998 799998765

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=94.31  E-value=0.048  Score=43.03  Aligned_cols=34  Identities=24%  Similarity=0.275  Sum_probs=30.1

Q ss_pred             cceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      +++++|+|+|-+|.-++..|++.|+++|+++.|.
T Consensus       127 ~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~  160 (283)
T 3jyo_A          127 LDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLD  160 (283)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSS
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECC
Confidence            4569999999999999999999998779998764

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=94.30  E-value=0.11  Score=43.37  Aligned_cols=47  Identities=13%  Similarity=0.165  Sum_probs=37.4

Q ss_pred             HHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccc
Q psy16200        116 LAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGS  177 (183)
Q Consensus       116 ~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~  177 (183)
                      .+.+.|++|++++.+.+|..+++++++|++             .+|+  ++.||.||.+++.
T Consensus       230 ~~~~~Gg~I~~~~~V~~I~~~~~~~~gV~~-------------~~g~--~~~ad~VV~~a~~  276 (501)
T 4dgk_A          230 LFQDLGGEVVLNARVSHMETTGNKIEAVHL-------------EDGR--RFLTQAVASNADV  276 (501)
T ss_dssp             HHHHTTCEEECSCCEEEEEEETTEEEEEEE-------------TTSC--EEECSCEEECCC-
T ss_pred             HHHHhCCceeeecceeEEEeeCCeEEEEEe-------------cCCc--EEEcCEEEECCCH
Confidence            356789999999999999888888888776             2343  6899999988764

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=94.27  E-value=0.047  Score=43.39  Aligned_cols=34  Identities=26%  Similarity=0.348  Sum_probs=31.0

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      .+|+|||+|-+|..+|.+|++.|..+++|+.+..
T Consensus        37 ~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~   70 (292)
T 3h8v_A           37 FAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDK   70 (292)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCc
Confidence            5699999999999999999999988999998643

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=94.25  E-value=0.046  Score=45.22  Aligned_cols=35  Identities=31%  Similarity=0.468  Sum_probs=32.0

Q ss_pred             cceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      ..||||+|+|..|+.+|+.+...|+++|+++.+++
T Consensus       188 d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~G  222 (398)
T 2a9f_A          188 EVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKFG  222 (398)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTE
T ss_pred             ccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence            35799999999999999999999998899999874

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*

Probab=94.20  E-value=0.029  Score=49.98  Aligned_cols=33  Identities=12%  Similarity=0.104  Sum_probs=29.8

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcC--------CceEEEEEeec
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCG--------ANKVLVVFRKG  103 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G--------~~~V~lv~r~~  103 (183)
                      ++|+|||||..|+-+|..|.+.|        . +|+|+++++
T Consensus        57 ~~v~IiGaGiaGL~aA~~L~~~g~~~~~~~~~-~V~v~E~~~   97 (721)
T 3ayj_A           57 YRIAIVGGGAGGIAALYELGRLAATLPAGSGI-DVQIYEADP   97 (721)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHTTSCTTCEE-EEEEECCCT
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCcccccCCCc-eEEEEeccC
Confidence            46999999999999999999988        5 699999876

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=94.18  E-value=0.061  Score=42.47  Aligned_cols=34  Identities=26%  Similarity=0.278  Sum_probs=30.5

Q ss_pred             cceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      +++++|+|+|-+|.-++..|.+.|+++|+++.|.
T Consensus       122 ~k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt  155 (282)
T 3fbt_A          122 NNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRN  155 (282)
T ss_dssp             TSEEEEECSSTTHHHHHHHHHHTTCSEEEEEESC
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            4679999999999999999999998789999875

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=94.18  E-value=0.051  Score=45.02  Aligned_cols=34  Identities=26%  Similarity=0.293  Sum_probs=30.5

Q ss_pred             cceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      +++|+|+|+|.+|..++..+..+|+ +|+++.++.
T Consensus       172 g~~V~ViGaG~iG~~aa~~a~~~Ga-~V~v~D~~~  205 (401)
T 1x13_A          172 PAKVMVIGAGVAGLAAIGAANSLGA-IVRAFDTRP  205 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCG
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCH
Confidence            4679999999999999999999998 699998764

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=94.16  E-value=0.048  Score=43.19  Aligned_cols=35  Identities=26%  Similarity=0.229  Sum_probs=29.9

Q ss_pred             CcceEEEEcCCh-hHHHHHHHHHHcCCceEEEEEeec
Q psy16200         68 LKGTVIVLGAGD-TAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        68 ~~~~VvViGgG~-~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      .+++|+|||.|. +|.-+|..|.+.|+ .|+++++++
T Consensus       160 ~Gk~vvVvGrs~iVG~plA~lL~~~gA-tVtv~hs~T  195 (286)
T 4a5o_A          160 YGMDAVVVGASNIVGRPMALELLLGGC-TVTVTHRFT  195 (286)
T ss_dssp             TTCEEEEECTTSTTHHHHHHHHHHTTC-EEEEECTTC
T ss_pred             CCCEEEEECCCchhHHHHHHHHHHCCC-eEEEEeCCC
Confidence            456799999655 89999999999998 799998764

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=94.13  E-value=0.05  Score=43.38  Aligned_cols=36  Identities=19%  Similarity=0.228  Sum_probs=30.3

Q ss_pred             CcceEEEEcCCh-hHHHHHHHHHHcCCceEEEEEeecC
Q psy16200         68 LKGTVIVLGAGD-TAFDCATSALRCGANKVLVVFRKGC  104 (183)
Q Consensus        68 ~~~~VvViGgG~-~g~e~A~~l~~~G~~~V~lv~r~~~  104 (183)
                      .+++|+|||.|. +|.-+|..|.+.|+ .|++++|++.
T Consensus       164 ~Gk~vvVIG~s~iVG~p~A~lL~~~gA-tVtv~~~~T~  200 (300)
T 4a26_A          164 AGKRAVVLGRSNIVGAPVAALLMKENA-TVTIVHSGTS  200 (300)
T ss_dssp             TTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTTSC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCCC
Confidence            456799999665 89999999999998 6999987643

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=94.11  E-value=0.044  Score=41.05  Aligned_cols=31  Identities=29%  Similarity=0.408  Sum_probs=28.3

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      +|+|+|+|.+|..+|..|.+.|. +|+++.+.
T Consensus         2 ~iiIiG~G~~G~~la~~L~~~g~-~v~vid~~   32 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLSRKY-GVVIINKD   32 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHHTTC-CEEEEESC
T ss_pred             EEEEECCCHHHHHHHHHHHhCCC-eEEEEECC
Confidence            58999999999999999999997 69999864

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=94.10  E-value=0.067  Score=42.86  Aligned_cols=34  Identities=29%  Similarity=0.379  Sum_probs=30.5

Q ss_pred             cceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      +++++|+|+|-+|.-++..|++.|+++|+++.|.
T Consensus       148 gk~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt  181 (312)
T 3t4e_A          148 GKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRK  181 (312)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECS
T ss_pred             CCEEEEECcCHHHHHHHHHHHHcCCCEEEEEECC
Confidence            4569999999999999999999998789999875

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=94.10  E-value=0.052  Score=42.97  Aligned_cols=35  Identities=29%  Similarity=0.305  Sum_probs=30.0

Q ss_pred             CcceEEEEcCCh-hHHHHHHHHHHcCCceEEEEEeec
Q psy16200         68 LKGTVIVLGAGD-TAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        68 ~~~~VvViGgG~-~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      .+++++|||.|. +|.-+|..|.+.|+ .|+++++++
T Consensus       159 ~Gk~vvVvGrs~iVG~p~A~lL~~~gA-tVtv~h~~t  194 (285)
T 3p2o_A          159 EGKDAVIIGASNIVGRPMATMLLNAGA-TVSVCHIKT  194 (285)
T ss_dssp             TTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTTC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCc
Confidence            456699999765 79999999999998 699998764

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=94.09  E-value=0.052  Score=42.96  Aligned_cols=35  Identities=20%  Similarity=0.169  Sum_probs=29.9

Q ss_pred             CcceEEEEcCCh-hHHHHHHHHHHcCCceEEEEEeec
Q psy16200         68 LKGTVIVLGAGD-TAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        68 ~~~~VvViGgG~-~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      .+++++|||.|. +|.-+|..|.+.|+ .|+++++++
T Consensus       160 ~Gk~vvVIG~s~iVG~p~A~lL~~~gA-tVtv~hs~t  195 (285)
T 3l07_A          160 EGAYAVVVGASNVVGKPVSQLLLNAKA-TVTTCHRFT  195 (285)
T ss_dssp             TTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTTC
T ss_pred             CCCEEEEECCCchhHHHHHHHHHHCCC-eEEEEeCCc
Confidence            456699999766 79999999999998 799998764

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=94.06  E-value=0.054  Score=42.66  Aligned_cols=35  Identities=17%  Similarity=0.070  Sum_probs=29.9

Q ss_pred             CcceEEEEcCC-hhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         68 LKGTVIVLGAG-DTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        68 ~~~~VvViGgG-~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      .+++|+|||.| .+|.-+|..|.+.|+ .|+++++++
T Consensus       149 ~Gk~vvVvG~s~iVG~plA~lL~~~gA-tVtv~~~~t  184 (276)
T 3ngx_A          149 HENTVTIVNRSPVVGRPLSMMLLNRNY-TVSVCHSKT  184 (276)
T ss_dssp             CSCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTTC
T ss_pred             CCCEEEEEcCChHHHHHHHHHHHHCCC-eEEEEeCCc
Confidence            45679999977 589999999999998 699998764

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=94.01  E-value=0.065  Score=43.72  Aligned_cols=34  Identities=29%  Similarity=0.445  Sum_probs=30.3

Q ss_pred             cceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      +++|+|+|+|.+|..+|..|..+|+ +|+++.|+.
T Consensus       166 ~~~V~ViGaG~iG~~~a~~l~~~Ga-~V~~~d~~~  199 (369)
T 2eez_A          166 PASVVILGGGTVGTNAAKIALGMGA-QVTILDVNH  199 (369)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC-EEEEEECCH
Confidence            4569999999999999999999998 799998754

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=94.00  E-value=0.051  Score=43.29  Aligned_cols=32  Identities=25%  Similarity=0.269  Sum_probs=28.8

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      .||+|||+|.+|.-+|..|++.|. +|+++.|+
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~-~V~~~~r~   34 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGH-CVSVVSRS   34 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTC-EEEEECST
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCC
Confidence            469999999999999999999996 79999764

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=93.98  E-value=0.1  Score=41.54  Aligned_cols=33  Identities=30%  Similarity=0.409  Sum_probs=29.5

Q ss_pred             ceEEEEcC-ChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         70 GTVIVLGA-GDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        70 ~~VvViGg-G~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      ++|+|.|| |++|..++..|.+.|. +|+++.|+.
T Consensus        11 ~~IlVtGatG~iG~~l~~~L~~~g~-~V~~l~R~~   44 (346)
T 3i6i_A           11 GRVLIAGATGFIGQFVATASLDAHR-PTYILARPG   44 (346)
T ss_dssp             CCEEEECTTSHHHHHHHHHHHHTTC-CEEEEECSS
T ss_pred             CeEEEECCCcHHHHHHHHHHHHCCC-CEEEEECCC
Confidence            56999997 9999999999999996 699999864

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=93.96  E-value=0.054  Score=42.96  Aligned_cols=34  Identities=26%  Similarity=0.309  Sum_probs=30.1

Q ss_pred             cceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      +++|+|+|+|.+|.-+|..|++.|+++|+++.|.
T Consensus       141 ~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~  174 (297)
T 2egg_A          141 GKRILVIGAGGGARGIYFSLLSTAAERIDMANRT  174 (297)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSS
T ss_pred             CCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence            4569999999999999999999998679998775

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=93.95  E-value=0.15  Score=41.86  Aligned_cols=49  Identities=14%  Similarity=0.111  Sum_probs=37.6

Q ss_pred             HHHHcCcEEEeCC---cceEEEccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccccc
Q psy16200        116 LAWEEKCEFLPFM---SPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTL  179 (183)
Q Consensus       116 ~~~~~gv~~~~~~---~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p  179 (183)
                      .+.+.|++|++++   .+.++..+++++++++.             .+|  .++.||.||+|+|.-.
T Consensus       170 ~a~~~Gv~i~~~t~~~~V~~i~~~~~~v~gV~t-------------~~G--~~i~Ad~VV~AtG~~s  221 (438)
T 3dje_A          170 EAQRMGVKFVTGTPQGRVVTLIFENNDVKGAVT-------------ADG--KIWRAERTFLCAGASA  221 (438)
T ss_dssp             HHHHTTCEEEESTTTTCEEEEEEETTEEEEEEE-------------TTT--EEEECSEEEECCGGGG
T ss_pred             HHHhcCCEEEeCCcCceEEEEEecCCeEEEEEE-------------CCC--CEEECCEEEECCCCCh
Confidence            4567899999999   99998766677766654             233  3689999999999753

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=93.91  E-value=0.08  Score=38.47  Aligned_cols=34  Identities=26%  Similarity=0.510  Sum_probs=29.9

Q ss_pred             ceEEEEcC-ChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200         70 GTVIVLGA-GDTAFDCATSALRCGANKVLVVFRKGC  104 (183)
Q Consensus        70 ~~VvViGg-G~~g~e~A~~l~~~G~~~V~lv~r~~~  104 (183)
                      ++|+|.|| |.+|..++..|.+.|. +|+++.|+..
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~g~-~V~~~~r~~~   38 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQAGY-EVTVLVRDSS   38 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCGG
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCC-eEEEEEeChh
Confidence            56999997 9999999999999996 7999998653

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=93.89  E-value=0.071  Score=43.40  Aligned_cols=34  Identities=15%  Similarity=0.349  Sum_probs=31.2

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      .+|+|||+|-.|.++|..|++.|..+++++.+..
T Consensus       119 ~~VlvvG~GglGs~va~~La~aGvg~i~lvD~D~  152 (353)
T 3h5n_A          119 AKVVILGCGGIGNHVSVILATSGIGEIILIDNDQ  152 (353)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEEECCB
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCeEEEECCCc
Confidence            4699999999999999999999998999998753

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=93.89  E-value=0.068  Score=41.94  Aligned_cols=34  Identities=24%  Similarity=0.441  Sum_probs=29.8

Q ss_pred             cceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      +++++|+|+|-+|.-++..|++.|+++|+++.|.
T Consensus       120 ~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~  153 (272)
T 3pwz_A          120 NRRVLLLGAGGAVRGALLPFLQAGPSELVIANRD  153 (272)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSC
T ss_pred             CCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            4569999999999999999999997689998764

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=93.87  E-value=0.066  Score=43.97  Aligned_cols=35  Identities=26%  Similarity=0.373  Sum_probs=30.6

Q ss_pred             CcceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         68 LKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        68 ~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      .+++|+|+|+|.+|..++..+..+|+ +|+++.++.
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga-~V~~~d~~~  205 (384)
T 1l7d_A          171 PPARVLVFGVGVAGLQAIATAKRLGA-VVMATDVRA  205 (384)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCH
Confidence            34679999999999999999999998 599988764

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=93.87  E-value=0.072  Score=41.51  Aligned_cols=32  Identities=28%  Similarity=0.204  Sum_probs=28.7

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         71 TVIVLGA-GDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        71 ~VvViGg-G~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      ||+|.|| |++|..++..|.+.|. +|+.+.|++
T Consensus         2 kILVTGatGfIG~~L~~~L~~~G~-~V~~l~R~~   34 (298)
T 4b4o_A            2 RVLVGGGTGFIGTALTQLLNARGH-EVTLVSRKP   34 (298)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCC
Confidence            5899997 9999999999999997 799998864

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=93.70  E-value=0.078  Score=41.79  Aligned_cols=34  Identities=24%  Similarity=0.329  Sum_probs=29.9

Q ss_pred             cceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      +++++|+|+|-+|.-++..|++.|+++|+++.|.
T Consensus       126 ~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~  159 (281)
T 3o8q_A          126 GATILLIGAGGAARGVLKPLLDQQPASITVTNRT  159 (281)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESS
T ss_pred             CCEEEEECchHHHHHHHHHHHhcCCCeEEEEECC
Confidence            4569999999999999999999997679998775

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=93.69  E-value=0.09  Score=38.71  Aligned_cols=32  Identities=22%  Similarity=0.340  Sum_probs=28.5

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         71 TVIVLGA-GDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        71 ~VvViGg-G~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      ||+|.|| |.+|..++..|.+.|. +|+++.|+.
T Consensus         2 kvlVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~   34 (221)
T 3ew7_A            2 KIGIIGATGRAGSRILEEAKNRGH-EVTAIVRNA   34 (221)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCS
T ss_pred             eEEEEcCCchhHHHHHHHHHhCCC-EEEEEEcCc
Confidence            5899995 9999999999999997 799998864

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=93.68  E-value=0.081  Score=43.35  Aligned_cols=34  Identities=32%  Similarity=0.401  Sum_probs=30.2

Q ss_pred             cceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      +++|+|+|+|.+|..+|..+..+|+ +|+++.|+.
T Consensus       168 g~~V~ViG~G~iG~~~a~~a~~~Ga-~V~~~d~~~  201 (377)
T 2vhw_A          168 PADVVVIGAGTAGYNAARIANGMGA-TVTVLDINI  201 (377)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCH
Confidence            4569999999999999999999998 699988753

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=93.67  E-value=0.054  Score=43.01  Aligned_cols=32  Identities=22%  Similarity=0.384  Sum_probs=28.2

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      .||+|||+|.+|.-+|..|++.|. +|+++.|+
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~-~V~~~~r~   34 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGE-DVHFLLRR   34 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSC-CEEEECST
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCC-eEEEEEcC
Confidence            469999999999999999999996 69999764

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=93.67  E-value=0.069  Score=42.57  Aligned_cols=47  Identities=19%  Similarity=0.242  Sum_probs=35.1

Q ss_pred             cceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCCcCCCCHHHHHHHHHcCcEEE
Q psy16200         69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFL  125 (183)
Q Consensus        69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~~~~~~~~~~~~~~~~gv~~~  125 (183)
                      ..||+|||+|.+|.-+|..|++.|. +|+++ +++        +.++.+.+.|+.+.
T Consensus        19 ~~kI~IiGaGa~G~~~a~~L~~~G~-~V~l~-~~~--------~~~~~i~~~g~~~~   65 (318)
T 3hwr_A           19 GMKVAIMGAGAVGCYYGGMLARAGH-EVILI-ARP--------QHVQAIEATGLRLE   65 (318)
T ss_dssp             -CEEEEESCSHHHHHHHHHHHHTTC-EEEEE-CCH--------HHHHHHHHHCEEEE
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCC-eEEEE-EcH--------hHHHHHHhCCeEEE
Confidence            3579999999999999999999996 79998 542        12344555666543

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=93.67  E-value=0.069  Score=41.19  Aligned_cols=33  Identities=24%  Similarity=0.277  Sum_probs=29.9

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      ++|+|.|+|++|..++..|.+.|. +|+.+.|+.
T Consensus         6 ~~ilVtGaG~iG~~l~~~L~~~g~-~V~~~~r~~   38 (286)
T 3ius_A            6 GTLLSFGHGYTARVLSRALAPQGW-RIIGTSRNP   38 (286)
T ss_dssp             CEEEEETCCHHHHHHHHHHGGGTC-EEEEEESCG
T ss_pred             CcEEEECCcHHHHHHHHHHHHCCC-EEEEEEcCh
Confidence            679999999999999999999997 799998864

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=93.60  E-value=0.076  Score=41.38  Aligned_cols=33  Identities=18%  Similarity=0.256  Sum_probs=29.0

Q ss_pred             cceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      +++++|+|+|.+|.-+|..|++.|+ +|+++.|+
T Consensus       119 ~k~vlViGaGg~g~a~a~~L~~~G~-~V~v~~R~  151 (271)
T 1nyt_A          119 GLRILLIGAGGASRGVLLPLLSLDC-AVTITNRT  151 (271)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCC-EEEEEECC
Confidence            4569999999999999999999996 79998764

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=93.57  E-value=0.078  Score=41.05  Aligned_cols=32  Identities=25%  Similarity=0.224  Sum_probs=28.8

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      ||.|||+|.+|.-+|..|++.|. +|+++.|+.
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~r~~   33 (291)
T 1ks9_A            2 KITVLGCGALGQLWLTALCKQGH-EVQGWLRVP   33 (291)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEECSSC
T ss_pred             eEEEECcCHHHHHHHHHHHhCCC-CEEEEEcCc
Confidence            58999999999999999999996 799998754

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=93.54  E-value=0.051  Score=42.80  Aligned_cols=35  Identities=20%  Similarity=0.251  Sum_probs=30.9

Q ss_pred             cceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      +++++|+|+|-+|.-++..|.+.|+++|+++.|..
T Consensus       117 ~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~  151 (277)
T 3don_A          117 DAYILILGAGGASKGIANELYKIVRPTLTVANRTM  151 (277)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCG
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence            45699999999999999999999987799998864

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=93.50  E-value=0.092  Score=40.58  Aligned_cols=33  Identities=21%  Similarity=0.358  Sum_probs=29.8

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      ++|+|.|+|++|..++..|.+.|. +|+.+.|+.
T Consensus         4 ~~ilVtGaG~iG~~l~~~L~~~g~-~V~~~~r~~   36 (286)
T 3gpi_A            4 SKILIAGCGDLGLELARRLTAQGH-EVTGLRRSA   36 (286)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTC-CEEEEECTT
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCc
Confidence            469999999999999999999997 699999864

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=93.47  E-value=0.096  Score=41.37  Aligned_cols=34  Identities=35%  Similarity=0.339  Sum_probs=30.0

Q ss_pred             CcceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         68 LKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        68 ~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      .+++|.|||.|.+|..+|..|..+|+ +|+++.|+
T Consensus       156 ~g~~v~IiG~G~iG~~~a~~l~~~G~-~V~~~d~~  189 (300)
T 2rir_A          156 HGSQVAVLGLGRTGMTIARTFAALGA-NVKVGARS  189 (300)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             CCCEEEEEcccHHHHHHHHHHHHCCC-EEEEEECC
Confidence            34569999999999999999999998 69988765

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=93.46  E-value=0.069  Score=45.40  Aligned_cols=34  Identities=29%  Similarity=0.440  Sum_probs=29.2

Q ss_pred             CcceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         68 LKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        68 ~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      .+++|+|+|+|.+|..+|..|+.+|+ +|.++.+.
T Consensus       264 ~GKtVvVtGaGgIG~aiA~~Laa~GA-~Viv~D~~  297 (488)
T 3ond_A          264 AGKVAVVAGYGDVGKGCAAALKQAGA-RVIVTEID  297 (488)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred             cCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCC
Confidence            34569999999999999999999998 69888654

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=93.46  E-value=0.094  Score=42.65  Aligned_cols=34  Identities=29%  Similarity=0.402  Sum_probs=30.4

Q ss_pred             cceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      +++|+|+|+|-+|.-++..+..+|+ +|+++.|+.
T Consensus       167 ~~~VlViGaGgvG~~aa~~a~~~Ga-~V~v~dr~~  200 (361)
T 1pjc_A          167 PGKVVILGGGVVGTEAAKMAVGLGA-QVQIFDINV  200 (361)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCH
Confidence            3679999999999999999999998 799998753

>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*

Probab=93.40  E-value=0.09  Score=42.66  Aligned_cols=33  Identities=12%  Similarity=0.242  Sum_probs=30.3

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      .+|+|||.|-+|.++|..|++.|..+++|+...
T Consensus        37 ~~VlivG~GGlG~~ia~~La~~Gvg~itlvD~d   69 (346)
T 1y8q_A           37 SRVLLVGLKGLGAEIAKNLILAGVKGLTMLDHE   69 (346)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence            569999999999999999999999999999753

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=93.38  E-value=0.11  Score=40.42  Aligned_cols=33  Identities=21%  Similarity=0.452  Sum_probs=29.0

Q ss_pred             ceEEEEcC-ChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         70 GTVIVLGA-GDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        70 ~~VvViGg-G~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      ++|+|.|| |++|..++..|.+.|. +|+++.|+.
T Consensus         5 ~~ilVtGatG~iG~~l~~~L~~~g~-~V~~l~R~~   38 (308)
T 1qyc_A            5 SRILLIGATGYIGRHVAKASLDLGH-PTFLLVRES   38 (308)
T ss_dssp             CCEEEESTTSTTHHHHHHHHHHTTC-CEEEECCCC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHhCCC-CEEEEECCc
Confidence            46999996 9999999999999996 699998864

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=93.37  E-value=0.12  Score=42.99  Aligned_cols=49  Identities=16%  Similarity=0.112  Sum_probs=37.1

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCCcCCCCHHHHHHHHHcCcEEEeC
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPF  127 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~~~~~~~~~~~~~~~~gv~~~~~  127 (183)
                      .+|+|+|.|.+|..+|+.|.+.|. +|+++++.+        +.++.+.+.|+.++++
T Consensus         5 ~~viIiG~Gr~G~~va~~L~~~g~-~vvvId~d~--------~~v~~~~~~g~~vi~G   53 (413)
T 3l9w_A            5 MRVIIAGFGRFGQITGRLLLSSGV-KMVVLDHDP--------DHIETLRKFGMKVFYG   53 (413)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTC-CEEEEECCH--------HHHHHHHHTTCCCEES
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCC-CEEEEECCH--------HHHHHHHhCCCeEEEc
Confidence            469999999999999999999997 699998653        2334455566655544

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=93.36  E-value=0.1  Score=41.08  Aligned_cols=34  Identities=35%  Similarity=0.356  Sum_probs=29.9

Q ss_pred             CcceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         68 LKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        68 ~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      .+++|.|||.|.+|..+|..|..+|+ +|+++.|+
T Consensus       154 ~g~~v~IiG~G~iG~~~a~~l~~~G~-~V~~~dr~  187 (293)
T 3d4o_A          154 HGANVAVLGLGRVGMSVARKFAALGA-KVKVGARE  187 (293)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhCCC-EEEEEECC
Confidence            34569999999999999999999998 79888765

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=93.36  E-value=0.09  Score=39.29  Aligned_cols=34  Identities=15%  Similarity=0.127  Sum_probs=29.5

Q ss_pred             cceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      ..+|.|||+|.+|.-+|..|++.|. +|+++.|+.
T Consensus        19 ~~~I~iiG~G~mG~~la~~l~~~g~-~V~~~~~~~   52 (209)
T 2raf_A           19 GMEITIFGKGNMGQAIGHNFEIAGH-EVTYYGSKD   52 (209)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTC-EEEEECTTC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCH
Confidence            3569999999999999999999996 799998754

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=93.34  E-value=0.11  Score=38.52  Aligned_cols=32  Identities=38%  Similarity=0.493  Sum_probs=28.4

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         71 TVIVLGA-GDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        71 ~VvViGg-G~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      ||+|.|| |.+|..++..|.+.|. +|+++.|+.
T Consensus         2 kilVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~   34 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEARRRGH-EVLAVVRDP   34 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCH
T ss_pred             EEEEEcCCCHHHHHHHHHHHHCCC-EEEEEEecc
Confidence            5899997 9999999999999997 799998863

>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*

Probab=93.31  E-value=0.094  Score=43.96  Aligned_cols=33  Identities=21%  Similarity=0.296  Sum_probs=30.5

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      .+|+|||+|-+|.++|..|++.|..+++|+...
T Consensus        41 ~~VlvvG~GGlGs~va~~La~aGvg~i~ivD~D   73 (434)
T 1tt5_B           41 CKVLVIGAGGLGCELLKNLALSGFRQIHVIDMD   73 (434)
T ss_dssp             CCEEEECSSTHHHHHHHHHHHTTCCCEEEEECC
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            569999999999999999999999899999864

>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A

Probab=93.27  E-value=0.088  Score=45.93  Aligned_cols=34  Identities=24%  Similarity=0.328  Sum_probs=31.2

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      .+|+|||+|-+|+.+|..|++.|..+++|+....
T Consensus       327 arVLIVGaGGLGs~vA~~La~aGVG~ItLvD~D~  360 (615)
T 4gsl_A          327 TKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGT  360 (615)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCB
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCC
Confidence            4699999999999999999999999999998754

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=93.24  E-value=0.17  Score=39.29  Aligned_cols=33  Identities=18%  Similarity=0.425  Sum_probs=29.0

Q ss_pred             ceEEEEcC-ChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         70 GTVIVLGA-GDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        70 ~~VvViGg-G~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      ++|+|.|| |.+|..++..|.+.|. +|+++.|+.
T Consensus         3 ~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~   36 (307)
T 2gas_A            3 NKILILGPTGAIGRHIVWASIKAGN-PTYALVRKT   36 (307)
T ss_dssp             CCEEEESTTSTTHHHHHHHHHHHTC-CEEEEECCS
T ss_pred             cEEEEECCCchHHHHHHHHHHhCCC-cEEEEECCC
Confidence            45999996 9999999999999996 699998864

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=93.21  E-value=0.089  Score=41.19  Aligned_cols=31  Identities=16%  Similarity=0.186  Sum_probs=28.1

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      ||.|||+|.+|.-+|..|++.|. +|+++.|+
T Consensus         5 ~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~r~   35 (316)
T 2ew2_A            5 KIAIAGAGAMGSRLGIMLHQGGN-DVTLIDQW   35 (316)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred             eEEEECcCHHHHHHHHHHHhCCC-cEEEEECC
Confidence            69999999999999999999996 79998764

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=93.16  E-value=0.28  Score=38.42  Aligned_cols=33  Identities=18%  Similarity=0.371  Sum_probs=29.1

Q ss_pred             ceEEEEcC-ChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         70 GTVIVLGA-GDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        70 ~~VvViGg-G~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      ++|+|.|| |.+|..++..|.+.|. +|+++.|+.
T Consensus        12 ~~ilVtGatG~iG~~l~~~L~~~g~-~V~~l~R~~   45 (318)
T 2r6j_A           12 SKILIFGGTGYIGNHMVKGSLKLGH-PTYVFTRPN   45 (318)
T ss_dssp             CCEEEETTTSTTHHHHHHHHHHTTC-CEEEEECTT
T ss_pred             CeEEEECCCchHHHHHHHHHHHCCC-cEEEEECCC
Confidence            56999996 9999999999999996 699998864

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=93.15  E-value=0.26  Score=40.13  Aligned_cols=47  Identities=15%  Similarity=0.189  Sum_probs=36.4

Q ss_pred             HHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEccccc
Q psy16200        116 LAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGST  178 (183)
Q Consensus       116 ~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~  178 (183)
                      .+.+.|+++++++.+++|..+++++++++.              +|  .++.||.||+|+|..
T Consensus       205 ~~~~~G~~i~~~~~V~~i~~~~~~~~gv~~--------------~g--~~~~ad~VV~a~~~~  251 (425)
T 3ka7_A          205 VISANGGKIHTGQEVSKILIENGKAAGIIA--------------DD--RIHDADLVISNLGHA  251 (425)
T ss_dssp             HHHHTTCEEECSCCEEEEEEETTEEEEEEE--------------TT--EEEECSEEEECSCHH
T ss_pred             HHHHcCCEEEECCceeEEEEECCEEEEEEE--------------CC--EEEECCEEEECCCHH
Confidence            346679999999999999876677765543              23  368999999999864

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=93.13  E-value=0.4  Score=37.97  Aligned_cols=34  Identities=15%  Similarity=0.084  Sum_probs=29.6

Q ss_pred             cceEEEEcC-ChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         69 KGTVIVLGA-GDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        69 ~~~VvViGg-G~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      .++|+|.|| |++|..++..|.+.|. +|+.+.|+.
T Consensus        25 ~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~   59 (351)
T 3ruf_A           25 PKTWLITGVAGFIGSNLLEKLLKLNQ-VVIGLDNFS   59 (351)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCS
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCC
Confidence            467999985 9999999999999996 799998864

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=93.12  E-value=0.091  Score=41.18  Aligned_cols=34  Identities=26%  Similarity=0.335  Sum_probs=30.3

Q ss_pred             cceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      +++++|+|+|-.|.-++..|.+.|+++|+++.|.
T Consensus       119 ~~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt  152 (271)
T 1npy_A          119 NAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARN  152 (271)
T ss_dssp             TSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSC
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence            4579999999999999999999998789998764

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=93.09  E-value=0.067  Score=42.09  Aligned_cols=32  Identities=16%  Similarity=0.166  Sum_probs=29.0

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      .||+|||+|.+|.-+|..|++.|. +|+++.|+
T Consensus         3 mkI~iiGaGa~G~~~a~~L~~~g~-~V~~~~r~   34 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQQSLP-HTTLIGRH   34 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHCT-TCEEEESS
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCC-eEEEEEec
Confidence            369999999999999999999996 69999886

>1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A*

Probab=93.07  E-value=0.13  Score=39.21  Aligned_cols=34  Identities=26%  Similarity=0.344  Sum_probs=28.8

Q ss_pred             cceEEEEcC-----------------ChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         69 KGTVIVLGA-----------------GDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        69 ~~~VvViGg-----------------G~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      +++|+|-||                 |-+|..+|+.|++.|+ +|+++.+..
T Consensus         8 gk~vlVTgG~T~E~iDpVR~itN~SSg~iG~aiA~~~~~~Ga-~V~l~~~~~   58 (226)
T 1u7z_A            8 HLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGA-NVTLVSGPV   58 (226)
T ss_dssp             TCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTC-EEEEEECSC
T ss_pred             CCEEEEECCCCCcccCceeeccCCCccHHHHHHHHHHHHCCC-EEEEEECCc
Confidence            355888888                 7899999999999998 699998754

>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A

Probab=93.04  E-value=0.1  Score=45.87  Aligned_cols=34  Identities=21%  Similarity=0.335  Sum_probs=31.2

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      .+|+|||+|-+|+++|..|++.|..+++|+....
T Consensus        18 s~VlVVGaGGLGsevak~La~aGVG~ItlvD~D~   51 (640)
T 1y8q_B           18 GRVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDT   51 (640)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEEECCB
T ss_pred             CeEEEECcCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence            5699999999999999999999998999998743

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=93.03  E-value=0.085  Score=42.46  Aligned_cols=34  Identities=21%  Similarity=0.109  Sum_probs=28.7

Q ss_pred             CcceEEEEcCCh-hHHHHHHHHHHcCCceEEEEEee
Q psy16200         68 LKGTVIVLGAGD-TAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        68 ~~~~VvViGgG~-~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      .+++|+|||+|. +|.-+|..|...|+ .|+++.|+
T Consensus       176 ~gk~vvVIG~G~iVG~~~A~~L~~~gA-tVtv~nR~  210 (320)
T 1edz_A          176 YGKKCIVINRSEIVGRPLAALLANDGA-TVYSVDVN  210 (320)
T ss_dssp             TTCEEEEECCCTTTHHHHHHHHHTTSC-EEEEECSS
T ss_pred             CCCEEEEECCCcchHHHHHHHHHHCCC-EEEEEeCc
Confidence            346799999996 59999999999997 69998653

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=93.03  E-value=0.13  Score=40.01  Aligned_cols=33  Identities=21%  Similarity=0.425  Sum_probs=28.9

Q ss_pred             ceEEEEcC-ChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         70 GTVIVLGA-GDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        70 ~~VvViGg-G~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      ++|+|.|| |++|..++..|.+.|. +|+++.|+.
T Consensus         5 ~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~   38 (313)
T 1qyd_A            5 SRVLIVGGTGYIGKRIVNASISLGH-PTYVLFRPE   38 (313)
T ss_dssp             CCEEEESTTSTTHHHHHHHHHHTTC-CEEEECCSC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHhCCC-cEEEEECCC
Confidence            46999995 9999999999999996 699998863

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=93.03  E-value=0.13  Score=39.27  Aligned_cols=34  Identities=24%  Similarity=0.236  Sum_probs=30.0

Q ss_pred             cceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      ..+|.|||.|.+|.-+|..|++.|. +|++..|+.
T Consensus        19 ~~kIgiIG~G~mG~alA~~L~~~G~-~V~~~~r~~   52 (245)
T 3dtt_A           19 GMKIAVLGTGTVGRTMAGALADLGH-EVTIGTRDP   52 (245)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCh
Confidence            4579999999999999999999997 799988754

>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A

Probab=93.01  E-value=0.091  Score=45.75  Aligned_cols=33  Identities=24%  Similarity=0.349  Sum_probs=30.5

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      .+|+|||+|-.|..+|..|++.|..+++|+...
T Consensus       328 ~kVLIVGaGGLGs~va~~La~aGVG~ItLvD~D  360 (598)
T 3vh1_A          328 TKVLLLGAGTLGCYVSRALIAWGVRKITFVDNG  360 (598)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCCEEEEECCS
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            469999999999999999999999999999764

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=92.97  E-value=0.18  Score=39.57  Aligned_cols=33  Identities=15%  Similarity=0.175  Sum_probs=29.1

Q ss_pred             ceEEEEcC-ChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         70 GTVIVLGA-GDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        70 ~~VvViGg-G~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      ++|+|.|| |.+|..++..|.+.|. +|+++.|+.
T Consensus         5 ~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~   38 (321)
T 3c1o_A            5 EKIIIYGGTGYIGKFMVRASLSFSH-PTFIYARPL   38 (321)
T ss_dssp             CCEEEETTTSTTHHHHHHHHHHTTC-CEEEEECCC
T ss_pred             cEEEEEcCCchhHHHHHHHHHhCCC-cEEEEECCc
Confidence            45999996 9999999999999996 699998864

>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A

Probab=92.95  E-value=0.068  Score=42.18  Aligned_cols=35  Identities=20%  Similarity=0.162  Sum_probs=29.8

Q ss_pred             CcceEEEEcCCh-hHHHHHHHHHHc--CCceEEEEEeec
Q psy16200         68 LKGTVIVLGAGD-TAFDCATSALRC--GANKVLVVFRKG  103 (183)
Q Consensus        68 ~~~~VvViGgG~-~g~e~A~~l~~~--G~~~V~lv~r~~  103 (183)
                      .+++++|||.|. +|.-+|..|.+.  |+ .|++++|++
T Consensus       157 ~gk~vvVvG~s~iVG~p~A~lL~~~g~~a-tVtv~h~~t  194 (281)
T 2c2x_A          157 AGAHVVVIGRGVTVGRPLGLLLTRRSENA-TVTLCHTGT  194 (281)
T ss_dssp             TTCEEEEECCCTTTHHHHHHHHTSTTTCC-EEEEECTTC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHhcCCCCC-EEEEEECch
Confidence            456799999996 599999999999  77 799998765

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=92.94  E-value=0.12  Score=40.52  Aligned_cols=33  Identities=30%  Similarity=0.348  Sum_probs=29.5

Q ss_pred             cceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      +++++|+|+|-+|.-++..|.+.| .+|+++.|.
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G-~~v~V~nRt  150 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQG-LQVSVLNRS  150 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT-CEEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCC-CEEEEEeCC
Confidence            567999999999999999999999 589998775

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=92.94  E-value=0.083  Score=45.15  Aligned_cols=32  Identities=34%  Similarity=0.483  Sum_probs=29.0

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      .++|||+|..|+-+|..|++.|. +|.++++..
T Consensus         9 D~iIvG~G~aG~~~A~~L~~~g~-~VlvlE~g~   40 (546)
T 1kdg_A            9 DYIIVGAGPGGIIAADRLSEAGK-KVLLLERGG   40 (546)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-CEEEECSSC
T ss_pred             eEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCC
Confidence            49999999999999999999986 699999753

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=92.91  E-value=0.1  Score=40.65  Aligned_cols=33  Identities=21%  Similarity=0.378  Sum_probs=29.3

Q ss_pred             cceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      +++++|+|+|.+|.-+|..|++.|. +|+++.|+
T Consensus       119 ~~~vlvlGaGg~g~a~a~~L~~~G~-~v~v~~R~  151 (272)
T 1p77_A          119 NQHVLILGAGGATKGVLLPLLQAQQ-NIVLANRT  151 (272)
T ss_dssp             TCEEEEECCSHHHHTTHHHHHHTTC-EEEEEESS
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence            4569999999999999999999995 79999875

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=92.88  E-value=0.1  Score=43.14  Aligned_cols=35  Identities=37%  Similarity=0.461  Sum_probs=30.2

Q ss_pred             CcceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         68 LKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        68 ~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      .+++|+|+|+|.+|.-++..|..+|+++|+++.|.
T Consensus       166 ~g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~  200 (404)
T 1gpj_A          166 HDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRT  200 (404)
T ss_dssp             TTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSS
T ss_pred             cCCEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence            34569999999999999999999998679888764

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=92.86  E-value=0.094  Score=42.02  Aligned_cols=32  Identities=19%  Similarity=0.226  Sum_probs=28.6

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      .||.|||+|.+|.-+|..|++.|. +|+++.|.
T Consensus         4 mkI~IiGaG~~G~~~a~~L~~~g~-~V~~~~r~   35 (335)
T 3ghy_A            4 TRICIVGAGAVGGYLGARLALAGE-AINVLARG   35 (335)
T ss_dssp             CCEEEESCCHHHHHHHHHHHHTTC-CEEEECCH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCC-EEEEEECh
Confidence            469999999999999999999996 69999763

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=92.75  E-value=0.11  Score=41.57  Aligned_cols=32  Identities=28%  Similarity=0.189  Sum_probs=28.5

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      .||.|||+|.+|.-+|..|++.|. +|+++.|+
T Consensus         5 mki~iiG~G~~G~~~a~~L~~~g~-~V~~~~r~   36 (359)
T 1bg6_A            5 KTYAVLGLGNGGHAFAAYLALKGQ-SVLAWDID   36 (359)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCC-EEEEEeCC
Confidence            479999999999999999999996 69998764

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=92.72  E-value=0.13  Score=38.48  Aligned_cols=32  Identities=41%  Similarity=0.412  Sum_probs=28.5

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      .+|.|||+|.+|..+|..|.+.|. +|+++.|+
T Consensus        29 ~~I~iiG~G~~G~~la~~l~~~g~-~V~~~~r~   60 (215)
T 2vns_A           29 PKVGILGSGDFARSLATRLVGSGF-KVVVGSRN   60 (215)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred             CEEEEEccCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            569999999999999999999997 69988764

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=92.68  E-value=0.11  Score=43.54  Aligned_cols=34  Identities=24%  Similarity=0.279  Sum_probs=29.7

Q ss_pred             CcceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         68 LKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        68 ~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      .+++|+|+|.|.+|..+|..|..+|+ +|.+..+.
T Consensus       219 ~GktV~ViG~G~IGk~vA~~Lra~Ga-~Viv~D~d  252 (435)
T 3gvp_A          219 GGKQVVVCGYGEVGKGCCAALKAMGS-IVYVTEID  252 (435)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred             cCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            45669999999999999999999998 69888764

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=92.57  E-value=0.14  Score=39.61  Aligned_cols=33  Identities=33%  Similarity=0.437  Sum_probs=30.0

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      +++|+|+|.+|.-++..|.+.|+++|+++.|..
T Consensus       110 ~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~  142 (253)
T 3u62_A          110 PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTI  142 (253)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCH
T ss_pred             eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence            899999999999999999999987799998753

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=92.55  E-value=0.15  Score=41.01  Aligned_cols=33  Identities=24%  Similarity=0.377  Sum_probs=29.1

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      |+|+|+|||..|.+++..+.++|. +|.++.+.+
T Consensus         2 K~I~ilGgg~~g~~~~~~Ak~~G~-~vv~vd~~~   34 (363)
T 4ffl_A            2 KTICLVGGKLQGFEAAYLSKKAGM-KVVLVDKNP   34 (363)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCT
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCC
Confidence            579999999999999999999998 698887643

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=92.46  E-value=0.14  Score=40.66  Aligned_cols=33  Identities=15%  Similarity=0.116  Sum_probs=28.9

Q ss_pred             ceEEEEcC-ChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         70 GTVIVLGA-GDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        70 ~~VvViGg-G~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      ++|+|.|| |++|..++..|.+.|. +|+.+.|+.
T Consensus        20 ~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~   53 (347)
T 4id9_A           20 HMILVTGSAGRVGRAVVAALRTQGR-TVRGFDLRP   53 (347)
T ss_dssp             -CEEEETTTSHHHHHHHHHHHHTTC-CEEEEESSC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCC-EEEEEeCCC
Confidence            45999997 9999999999999997 699998864

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=92.46  E-value=0.15  Score=37.76  Aligned_cols=31  Identities=26%  Similarity=0.347  Sum_probs=27.9

Q ss_pred             eEEEEc-CChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         71 TVIVLG-AGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        71 ~VvViG-gG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      ||+|+| +|.+|..+|..|.+.|. +|+++.|+
T Consensus         2 ~i~iiGa~G~~G~~ia~~l~~~g~-~V~~~~r~   33 (212)
T 1jay_A            2 RVALLGGTGNLGKGLALRLATLGH-EIVVGSRR   33 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTC-EEEEEESS
T ss_pred             eEEEEcCCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            589999 99999999999999996 79998775

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=92.45  E-value=0.12  Score=43.57  Aligned_cols=34  Identities=29%  Similarity=0.271  Sum_probs=29.5

Q ss_pred             CcceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         68 LKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        68 ~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      .+++|+|+|.|.+|..+|..|..+|+ +|.+..+.
T Consensus       246 ~GKTVgVIG~G~IGr~vA~~lrafGa-~Viv~d~d  279 (464)
T 3n58_A          246 AGKVAVVCGYGDVGKGSAQSLAGAGA-RVKVTEVD  279 (464)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             cCCEEEEECcCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            44569999999999999999999998 69888654

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=92.45  E-value=0.17  Score=37.98  Aligned_cols=34  Identities=15%  Similarity=0.190  Sum_probs=29.0

Q ss_pred             ceEEEEcC-ChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200         70 GTVIVLGA-GDTAFDCATSALRCGANKVLVVFRKGC  104 (183)
Q Consensus        70 ~~VvViGg-G~~g~e~A~~l~~~G~~~V~lv~r~~~  104 (183)
                      ++|+|.|| |.+|..++..|++.|. +|.++.|+..
T Consensus         2 k~vlVtGasg~iG~~l~~~L~~~g~-~V~~~~r~~~   36 (255)
T 2dkn_A            2 SVIAITGSASGIGAALKELLARAGH-TVIGIDRGQA   36 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSSS
T ss_pred             cEEEEeCCCcHHHHHHHHHHHhCCC-EEEEEeCChh
Confidence            35888885 9999999999999997 6999988643

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=92.44  E-value=0.13  Score=40.85  Aligned_cols=32  Identities=22%  Similarity=0.153  Sum_probs=28.6

Q ss_pred             cceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      .++|.|||.|.+|..+|..|+ .|. +|+++.|+
T Consensus        12 ~~~V~vIG~G~MG~~iA~~la-aG~-~V~v~d~~   43 (293)
T 1zej_A           12 HMKVFVIGAGLMGRGIAIAIA-SKH-EVVLQDVS   43 (293)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-TTS-EEEEECSC
T ss_pred             CCeEEEEeeCHHHHHHHHHHH-cCC-EEEEEECC
Confidence            467999999999999999999 997 79998764

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=92.40  E-value=0.15  Score=39.66  Aligned_cols=35  Identities=20%  Similarity=0.218  Sum_probs=30.4

Q ss_pred             cceEEEEcC-ChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200         69 KGTVIVLGA-GDTAFDCATSALRCGANKVLVVFRKGC  104 (183)
Q Consensus        69 ~~~VvViGg-G~~g~e~A~~l~~~G~~~V~lv~r~~~  104 (183)
                      .++|+|.|| |++|..++..|.+.|. +|+.+.|+..
T Consensus         7 ~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~   42 (321)
T 3vps_A            7 KHRILITGGAGFIGGHLARALVASGE-EVTVLDDLRV   42 (321)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-CEEEECCCSS
T ss_pred             CCeEEEECCCChHHHHHHHHHHHCCC-EEEEEecCCc
Confidence            367999997 9999999999999997 6999988653

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=92.33  E-value=0.2  Score=42.29  Aligned_cols=33  Identities=21%  Similarity=0.325  Sum_probs=29.9

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      ++|.|||+|.+|..+|..|++.|. +|+++.++.
T Consensus        55 ~kVaVIGaG~MG~~IA~~la~aG~-~V~l~D~~~   87 (460)
T 3k6j_A           55 NSVAIIGGGTMGKAMAICFGLAGI-ETFLVVRNE   87 (460)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCC-eEEEEECcH
Confidence            579999999999999999999997 799998754

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=92.31  E-value=0.15  Score=40.07  Aligned_cols=33  Identities=21%  Similarity=0.209  Sum_probs=29.2

Q ss_pred             ceEEEEcC-ChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         70 GTVIVLGA-GDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        70 ~~VvViGg-G~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      ++|+|.|| |++|..++..|++.|. +|+++.|+.
T Consensus         4 ~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~   37 (345)
T 2z1m_A            4 KRALITGIRGQDGAYLAKLLLEKGY-EVYGADRRS   37 (345)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEECSCC
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC-EEEEEECCC
Confidence            56999987 9999999999999997 799998864

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=92.30  E-value=0.15  Score=41.80  Aligned_cols=32  Identities=28%  Similarity=0.160  Sum_probs=27.5

Q ss_pred             CcceEEEEcCChhHHHHHHHHHHcCCceEEEEE
Q psy16200         68 LKGTVIVLGAGDTAFDCATSALRCGANKVLVVF  100 (183)
Q Consensus        68 ~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~  100 (183)
                      .+++|+|+|.|.+|.-+|..|.++|+ +|.+..
T Consensus       172 ~GktV~V~G~G~VG~~~A~~L~~~Ga-kVvv~D  203 (364)
T 1leh_A          172 EGLAVSVQGLGNVAKALCKKLNTEGA-KLVVTD  203 (364)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEC
T ss_pred             CcCEEEEECchHHHHHHHHHHHHCCC-EEEEEc
Confidence            34569999999999999999999998 588654

>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2

Probab=92.29  E-value=0.19  Score=38.22  Aligned_cols=35  Identities=23%  Similarity=0.260  Sum_probs=28.3

Q ss_pred             CCcce-EEEEc-CChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         67 ILKGT-VIVLG-AGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        67 ~~~~~-VvViG-gG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      .+.+| ++|.| +|.+|..+|..|++.|+ +|.++.|+
T Consensus        16 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~   52 (249)
T 1o5i_A           16 GIRDKGVLVLAASRGIGRAVADVLSQEGA-EVTICARN   52 (249)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             ccCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCC
Confidence            34444 77777 57899999999999998 69999875

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=92.25  E-value=0.16  Score=39.67  Aligned_cols=33  Identities=18%  Similarity=0.192  Sum_probs=29.1

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      .+|.|||.|.+|.-+|..|++.|. +|+++.|+.
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~-~V~~~dr~~   34 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGC-SVTIWNRSP   34 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSG
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCC-eEEEEcCCH
Confidence            469999999999999999999996 799887753

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=92.25  E-value=0.13  Score=40.73  Aligned_cols=46  Identities=22%  Similarity=0.230  Sum_probs=34.8

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCCcCCCCHHHHHHHHHcCcEEE
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFL  125 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~~~~~~~~~~~~~~~~gv~~~  125 (183)
                      -||+|||+|.+|.-+|..|+ .|. +|+++.|+.        +..+.+.+.|+.+.
T Consensus         3 mkI~IiGaGa~G~~~a~~L~-~g~-~V~~~~r~~--------~~~~~l~~~G~~~~   48 (307)
T 3ego_A            3 LKIGIIGGGSVGLLCAYYLS-LYH-DVTVVTRRQ--------EQAAAIQSEGIRLY   48 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-TTS-EEEEECSCH--------HHHHHHHHHCEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHh-cCC-ceEEEECCH--------HHHHHHHhCCceEe
Confidence            36999999999999999999 886 799997652        12344556676654

>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=92.24  E-value=0.19  Score=39.57  Aligned_cols=37  Identities=19%  Similarity=0.194  Sum_probs=29.3

Q ss_pred             CCCcceEEEEcC-ChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         66 PILKGTVIVLGA-GDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        66 ~~~~~~VvViGg-G~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      ....++|+|.|| |++|..++..|.+.|. +|+++.|+.
T Consensus        11 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~-~V~~~~r~~   48 (335)
T 1rpn_A           11 GSMTRSALVTGITGQDGAYLAKLLLEKGY-RVHGLVARR   48 (335)
T ss_dssp             ----CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCC
T ss_pred             cccCCeEEEECCCChHHHHHHHHHHHCCC-eEEEEeCCC
Confidence            345567999985 9999999999999997 799998864

>2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae}

Probab=92.23  E-value=0.21  Score=38.32  Aligned_cols=26  Identities=19%  Similarity=0.204  Sum_probs=22.9

Q ss_pred             ChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200         78 GDTAFDCATSALRCGANKVLVVFRKGC  104 (183)
Q Consensus        78 G~~g~e~A~~l~~~G~~~V~lv~r~~~  104 (183)
                      |-+|..+|+.|+++|+ +|++++|...
T Consensus        29 G~mG~aiA~~~~~~Ga-~V~lv~~~~~   54 (232)
T 2gk4_A           29 GHLGKIITETLLSAGY-EVCLITTKRA   54 (232)
T ss_dssp             CHHHHHHHHHHHHTTC-EEEEEECTTS
T ss_pred             CHHHHHHHHHHHHCCC-EEEEEeCCcc
Confidence            5799999999999998 6999998653

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=92.19  E-value=0.13  Score=43.47  Aligned_cols=32  Identities=13%  Similarity=0.240  Sum_probs=28.7

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      -||.|||.|++|+-+|..|++.|. +|+++.+.
T Consensus         9 ~~I~VIG~G~vG~~lA~~la~~G~-~V~~~d~~   40 (478)
T 2y0c_A            9 MNLTIIGSGSVGLVTGACLADIGH-DVFCLDVD   40 (478)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred             ceEEEECcCHHHHHHHHHHHhCCC-EEEEEECC
Confidence            369999999999999999999997 69999764

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=92.18  E-value=0.19  Score=38.91  Aligned_cols=35  Identities=20%  Similarity=0.144  Sum_probs=27.4

Q ss_pred             CCcceEEEE-c-CChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         67 ILKGTVIVL-G-AGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        67 ~~~~~VvVi-G-gG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      ++.+|+++| | ++-+|..+|+.|++.|+ +|.++.|+
T Consensus         4 sL~gKvalVTGas~GIG~aiA~~la~~Ga-~Vv~~~~~   40 (254)
T 4fn4_A            4 SLKNKVVIVTGAGSGIGRAIAKKFALNDS-IVVAVELL   40 (254)
T ss_dssp             GGTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECC
Confidence            456776666 4 55689999999999998 69998775

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=92.09  E-value=0.12  Score=42.14  Aligned_cols=32  Identities=28%  Similarity=0.245  Sum_probs=28.8

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      .||.|||+|.+|.-+|..|++.|. +|+++.|+
T Consensus        30 mkI~VIGaG~mG~alA~~La~~G~-~V~l~~r~   61 (356)
T 3k96_A           30 HPIAILGAGSWGTALALVLARKGQ-KVRLWSYE   61 (356)
T ss_dssp             SCEEEECCSHHHHHHHHHHHTTTC-CEEEECSC
T ss_pred             CeEEEECccHHHHHHHHHHHHCCC-eEEEEeCC
Confidence            479999999999999999999996 69998774

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=92.06  E-value=0.13  Score=43.33  Aligned_cols=32  Identities=34%  Similarity=0.336  Sum_probs=29.0

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      ++|.|||+|.+|.-+|..|++.|. +|+++.++
T Consensus        38 ~kV~VIGaG~MG~~iA~~la~~G~-~V~l~D~~   69 (463)
T 1zcj_A           38 SSVGVLGLGTMGRGIAISFARVGI-SVVAVESD   69 (463)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTC-EEEEECSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCC-eEEEEECC
Confidence            569999999999999999999997 79998765

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=92.04  E-value=0.15  Score=40.73  Aligned_cols=34  Identities=26%  Similarity=0.304  Sum_probs=29.3

Q ss_pred             CcceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         68 LKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        68 ~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      .+-||.|||+|.+|.-+|..|++.|. +|+++.|+
T Consensus        13 ~~~kI~iIG~G~mG~ala~~L~~~G~-~V~~~~r~   46 (335)
T 1z82_A           13 MEMRFFVLGAGSWGTVFAQMLHENGE-EVILWARR   46 (335)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             cCCcEEEECcCHHHHHHHHHHHhCCC-eEEEEeCC
Confidence            44579999999999999999999996 79998764

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=92.00  E-value=0.15  Score=42.88  Aligned_cols=31  Identities=26%  Similarity=0.293  Sum_probs=28.3

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      ||.|||.|++|.-+|..|++.|. +|+++.++
T Consensus         4 kI~VIG~G~vG~~lA~~La~~G~-~V~~~D~~   34 (450)
T 3gg2_A            4 DIAVVGIGYVGLVSATCFAELGA-NVRCIDTD   34 (450)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred             EEEEECcCHHHHHHHHHHHhcCC-EEEEEECC
Confidence            69999999999999999999997 79998764

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=92.00  E-value=0.15  Score=43.48  Aligned_cols=35  Identities=31%  Similarity=0.359  Sum_probs=30.3

Q ss_pred             CCcceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         67 ILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        67 ~~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      ..+++|+|+|.|.+|..+|..+..+|+ +|.++.++
T Consensus       272 l~GktV~IiG~G~IG~~~A~~lka~Ga-~Viv~d~~  306 (494)
T 3ce6_A          272 IGGKKVLICGYGDVGKGCAEAMKGQGA-RVSVTEID  306 (494)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred             CCcCEEEEEccCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            345679999999999999999999998 69888764

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=91.99  E-value=0.21  Score=39.43  Aligned_cols=33  Identities=18%  Similarity=0.216  Sum_probs=28.7

Q ss_pred             ceEEEEcC-ChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         70 GTVIVLGA-GDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        70 ~~VvViGg-G~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      ++|+|.|| |++|..++..|++.|. +|+++.|+.
T Consensus        21 ~~vlVTGasG~iG~~l~~~L~~~g~-~V~~~~r~~   54 (330)
T 2pzm_A           21 MRILITGGAGCLGSNLIEHWLPQGH-EILVIDNFA   54 (330)
T ss_dssp             CEEEEETTTSHHHHHHHHHHGGGTC-EEEEEECCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCC
Confidence            45999986 9999999999999997 799998853

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=91.97  E-value=0.15  Score=39.10  Aligned_cols=32  Identities=31%  Similarity=0.290  Sum_probs=27.3

Q ss_pred             ceEEEEcC-C-hhHHHHHHHHHHcCCceEEEEEee
Q psy16200         70 GTVIVLGA-G-DTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        70 ~~VvViGg-G-~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      ++++|.|| | -+|..+|+.|++.|+ +|.++.|+
T Consensus        23 k~vlITGasg~GIG~~~a~~l~~~G~-~V~~~~r~   56 (266)
T 3o38_A           23 KVVLVTAAAGTGIGSTTARRALLEGA-DVVISDYH   56 (266)
T ss_dssp             CEEEESSCSSSSHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CEEEEECCCCCchHHHHHHHHHHCCC-EEEEecCC
Confidence            44888898 7 499999999999998 69998875

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=91.96  E-value=0.16  Score=39.61  Aligned_cols=33  Identities=30%  Similarity=0.466  Sum_probs=29.2

Q ss_pred             cceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      +++|+|||+|.+|.-+|..|.+.|. +|+++.|+
T Consensus       129 ~~~v~iiGaG~~g~aia~~L~~~g~-~V~v~~r~  161 (275)
T 2hk9_A          129 EKSILVLGAGGASRAVIYALVKEGA-KVFLWNRT  161 (275)
T ss_dssp             GSEEEEECCSHHHHHHHHHHHHHTC-EEEEECSS
T ss_pred             CCEEEEECchHHHHHHHHHHHHcCC-EEEEEECC
Confidence            4579999999999999999999998 79888764

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=91.93  E-value=0.17  Score=40.20  Aligned_cols=33  Identities=15%  Similarity=0.120  Sum_probs=28.6

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      .||+|||+|.+|.-+|..|++.|..+|+++.+.
T Consensus         5 ~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~   37 (317)
T 2ewd_A            5 RKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIA   37 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCceEEEEeCC
Confidence            479999999999999999999886359998765

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=91.92  E-value=0.13  Score=38.19  Aligned_cols=34  Identities=26%  Similarity=0.322  Sum_probs=29.8

Q ss_pred             ceEEEEcC-ChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200         70 GTVIVLGA-GDTAFDCATSALRCGANKVLVVFRKGC  104 (183)
Q Consensus        70 ~~VvViGg-G~~g~e~A~~l~~~G~~~V~lv~r~~~  104 (183)
                      ++|+|.|| |++|..++..|.+.|. +|+++.|+..
T Consensus         5 ~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~   39 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEALNRGF-EVTAVVRHPE   39 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHHHTTTC-EEEEECSCGG
T ss_pred             CEEEEEcCCchHHHHHHHHHHHCCC-EEEEEEcCcc
Confidence            56999994 9999999999999996 7999998753

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=91.91  E-value=0.19  Score=38.93  Aligned_cols=35  Identities=23%  Similarity=0.293  Sum_probs=28.2

Q ss_pred             CCcceEEEE--cCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         67 ILKGTVIVL--GAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        67 ~~~~~VvVi--GgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      ++.+|++||  |++-+|..+|+.|++.|+ +|.+..|+
T Consensus         6 ~L~gKvalVTGas~GIG~aia~~la~~Ga-~Vvi~~~~   42 (255)
T 4g81_D            6 DLTGKTALVTGSARGLGFAYAEGLAAAGA-RVILNDIR   42 (255)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEECCSC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence            466787777  466799999999999998 69998764

>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A*

Probab=91.89  E-value=0.14  Score=43.92  Aligned_cols=33  Identities=12%  Similarity=0.129  Sum_probs=30.6

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      .+|+|||+|-+|+++|..|++.|..+++|+...
T Consensus        33 ~~VlvvG~GGlGseiak~La~aGVg~itlvD~D   65 (531)
T 1tt5_A           33 AHVCLINATATGTEILKNLVLPGIGSFTIIDGN   65 (531)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCSEEEEECCC
T ss_pred             CeEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            569999999999999999999999999999864

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=91.88  E-value=0.15  Score=42.52  Aligned_cols=31  Identities=23%  Similarity=0.264  Sum_probs=27.9

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      ||.|||.|++|.-+|..|++.|. +|+++.++
T Consensus         2 kI~VIG~G~vG~~~A~~la~~G~-~V~~~d~~   32 (436)
T 1mv8_A            2 RISIFGLGYVGAVCAGCLSARGH-EVIGVDVS   32 (436)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTC-EEEEECSC
T ss_pred             EEEEECCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            58999999999999999999997 69998764

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=91.86  E-value=0.16  Score=42.62  Aligned_cols=34  Identities=32%  Similarity=0.377  Sum_probs=29.6

Q ss_pred             CcceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         68 LKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        68 ~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      .+++|+|+|.|.+|..+|..|..+|+ +|.++.+.
T Consensus       210 ~GktVgIiG~G~IG~~vA~~Lka~Ga-~Viv~D~~  243 (436)
T 3h9u_A          210 AGKTACVCGYGDVGKGCAAALRGFGA-RVVVTEVD  243 (436)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred             cCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEECCC
Confidence            34569999999999999999999998 69888764

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=91.84  E-value=0.22  Score=38.94  Aligned_cols=33  Identities=27%  Similarity=0.323  Sum_probs=28.9

Q ss_pred             cceEEEEc-CChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         69 KGTVIVLG-AGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        69 ~~~VvViG-gG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      +++++|+| +|.+|..++..|++.|+ +|+++.|+
T Consensus       119 gk~vlVtGaaGGiG~aia~~L~~~G~-~V~i~~R~  152 (287)
T 1lu9_A          119 GKKAVVLAGTGPVGMRSAALLAGEGA-EVVLCGRK  152 (287)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcC-EEEEEECC
Confidence            35699999 89999999999999998 59998875

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=91.80  E-value=0.23  Score=36.72  Aligned_cols=33  Identities=21%  Similarity=0.243  Sum_probs=28.7

Q ss_pred             ceEEEEc-CChhHHHHHHHHH-HcCCceEEEEEeec
Q psy16200         70 GTVIVLG-AGDTAFDCATSAL-RCGANKVLVVFRKG  103 (183)
Q Consensus        70 ~~VvViG-gG~~g~e~A~~l~-~~G~~~V~lv~r~~  103 (183)
                      ++|+|.| +|.+|..++..|+ +.|. +|+++.|+.
T Consensus         6 k~vlVtGasg~iG~~~~~~l~~~~g~-~V~~~~r~~   40 (221)
T 3r6d_A            6 XYITILGAAGQIAQXLTATLLTYTDM-HITLYGRQL   40 (221)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHHCCC-EEEEEESSH
T ss_pred             EEEEEEeCCcHHHHHHHHHHHhcCCc-eEEEEecCc
Confidence            5599999 5999999999999 8997 799998864

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=91.79  E-value=0.22  Score=39.17  Aligned_cols=33  Identities=33%  Similarity=0.279  Sum_probs=28.7

Q ss_pred             cceEEEEcC-ChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         69 KGTVIVLGA-GDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        69 ~~~VvViGg-G~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      +++|+|.|| |++|..++..|.+.|. +|+++.|+
T Consensus        11 ~~~vlVTGatG~iG~~l~~~L~~~g~-~V~~~~r~   44 (342)
T 1y1p_A           11 GSLVLVTGANGFVASHVVEQLLEHGY-KVRGTARS   44 (342)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             CCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            356999987 9999999999999997 69998875

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=91.76  E-value=0.28  Score=37.92  Aligned_cols=36  Identities=19%  Similarity=0.209  Sum_probs=28.9

Q ss_pred             CCCcceEEEE--cCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         66 PILKGTVIVL--GAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        66 ~~~~~~VvVi--GgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      ..+.+|++||  |++-+|..+|+.|++.|+ +|.+..|+
T Consensus         5 f~L~GKvalVTGas~GIG~aiA~~la~~Ga-~Vvi~~r~   42 (247)
T 4hp8_A            5 FSLEGRKALVTGANTGLGQAIAVGLAAAGA-EVVCAARR   42 (247)
T ss_dssp             TCCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             cCCCCCEEEEeCcCCHHHHHHHHHHHHcCC-EEEEEeCC
Confidence            3566887777  456688999999999998 69998875

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=91.72  E-value=0.24  Score=37.11  Aligned_cols=32  Identities=31%  Similarity=0.319  Sum_probs=27.6

Q ss_pred             ceEEEEcC-ChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         70 GTVIVLGA-GDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        70 ~~VvViGg-G~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      ++++|.|| |.+|..+|..|++.|. +|.++.|+
T Consensus         8 ~~vlVTGasggiG~~~a~~l~~~G~-~V~~~~r~   40 (244)
T 1cyd_A            8 LRALVTGAGKGIGRDTVKALHASGA-KVVAVTRT   40 (244)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence            45888875 8999999999999998 69998775

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=91.71  E-value=0.17  Score=40.10  Aligned_cols=30  Identities=23%  Similarity=0.252  Sum_probs=27.5

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEe
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFR  101 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r  101 (183)
                      ||.|||+|.+|.-+|..|++.|. +|+++.|
T Consensus         2 ~I~iiG~G~mG~~~a~~L~~~g~-~V~~~~r   31 (335)
T 1txg_A            2 IVSILGAGAMGSALSVPLVDNGN-EVRIWGT   31 (335)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCC-EEEEECC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCC-eEEEEEc
Confidence            58999999999999999999996 7999977

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=91.69  E-value=0.15  Score=39.83  Aligned_cols=32  Identities=31%  Similarity=0.215  Sum_probs=28.7

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      +|.|||.|.+|.-+|..|++.|. +|+++.|+.
T Consensus         3 ~I~iiG~G~mG~~~a~~l~~~G~-~V~~~dr~~   34 (287)
T 3pdu_A            3 TYGFLGLGIMGGPMAANLVRAGF-DVTVWNRNP   34 (287)
T ss_dssp             CEEEECCSTTHHHHHHHHHHHTC-CEEEECSSG
T ss_pred             eEEEEccCHHHHHHHHHHHHCCC-eEEEEcCCH
Confidence            69999999999999999999996 699987753

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=91.67  E-value=0.16  Score=40.20  Aligned_cols=33  Identities=21%  Similarity=0.247  Sum_probs=28.2

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCC-ceEEEEEee
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGA-NKVLVVFRK  102 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~-~~V~lv~r~  102 (183)
                      .||+|||+|.+|.-+|..|++.|. .+|+++.++
T Consensus         8 mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~   41 (319)
T 1lld_A            8 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIA   41 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            479999999999999999999874 269998764

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=91.64  E-value=0.23  Score=38.09  Aligned_cols=35  Identities=29%  Similarity=0.512  Sum_probs=27.8

Q ss_pred             Ccce-EEEEcCC---hhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         68 LKGT-VIVLGAG---DTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        68 ~~~~-VvViGgG---~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      +.+| ++|-|++   -+|..+|+.|++.|+ +|.+..|+.
T Consensus         4 l~gK~alVTGaa~~~GIG~aiA~~la~~Ga-~Vvi~~r~~   42 (256)
T 4fs3_A            4 LENKTYVIMGIANKRSIAFGVAKVLDQLGA-KLVFTYRKE   42 (256)
T ss_dssp             CTTCEEEEECCCSTTCHHHHHHHHHHHTTC-EEEEEESSG
T ss_pred             CCCCEEEEECCCCCchHHHHHHHHHHHCCC-EEEEEECCH
Confidence            4455 6666853   599999999999998 699998863

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*

Probab=91.58  E-value=0.26  Score=37.03  Aligned_cols=32  Identities=28%  Similarity=0.322  Sum_probs=27.4

Q ss_pred             ceEEEEcC-ChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         70 GTVIVLGA-GDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        70 ~~VvViGg-G~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      ++|+|.|| |.+|..+|+.|++.|. +|.++.|+
T Consensus         8 k~vlITGasggiG~~~a~~l~~~G~-~V~~~~r~   40 (244)
T 3d3w_A            8 RRVLVTGAGKGIGRGTVQALHATGA-RVVAVSRT   40 (244)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             cEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            45888885 8999999999999998 69988765

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=91.56  E-value=0.21  Score=40.13  Aligned_cols=33  Identities=21%  Similarity=0.229  Sum_probs=28.9

Q ss_pred             cceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      +++|.|||.|.+|..+|..|..+|. +|+.+.|+
T Consensus       150 g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~  182 (334)
T 2dbq_A          150 GKTIGIIGLGRIGQAIAKRAKGFNM-RILYYSRT  182 (334)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             CCEEEEEccCHHHHHHHHHHHhCCC-EEEEECCC
Confidence            4569999999999999999999997 69887664

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=91.54  E-value=0.19  Score=39.79  Aligned_cols=33  Identities=30%  Similarity=0.162  Sum_probs=29.3

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      .+|.|||.|.+|.-+|..|++.|. +|+++.|+.
T Consensus        22 ~~I~iIG~G~mG~~~A~~l~~~G~-~V~~~dr~~   54 (310)
T 3doj_A           22 MEVGFLGLGIMGKAMSMNLLKNGF-KVTVWNRTL   54 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSG
T ss_pred             CEEEEECccHHHHHHHHHHHHCCC-eEEEEeCCH
Confidence            469999999999999999999997 799987753

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=91.54  E-value=0.19  Score=39.22  Aligned_cols=33  Identities=15%  Similarity=-0.007  Sum_probs=27.2

Q ss_pred             ceEEEEcC-ChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         70 GTVIVLGA-GDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        70 ~~VvViGg-G~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      ++|+|.|| |++|..++..|.+.|. +|+++.|+.
T Consensus         3 ~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~   36 (315)
T 2ydy_A            3 RRVLVTGATGLLGRAVHKEFQQNNW-HAVGCGFRR   36 (315)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTC-EEEEEC---
T ss_pred             CeEEEECCCcHHHHHHHHHHHhCCC-eEEEEccCC
Confidence            56999987 9999999999999997 799998753

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=91.51  E-value=0.38  Score=37.83  Aligned_cols=33  Identities=30%  Similarity=0.346  Sum_probs=28.7

Q ss_pred             ceEEEEc-CChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         70 GTVIVLG-AGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        70 ~~VvViG-gG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      ++|+|.| +|++|..++..|++.|. +|.++.|+.
T Consensus         6 ~~vlVTGatG~iG~~l~~~L~~~G~-~V~~~~r~~   39 (341)
T 3enk_A            6 GTILVTGGAGYIGSHTAVELLAHGY-DVVIADNLV   39 (341)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEECCCS
T ss_pred             cEEEEecCCcHHHHHHHHHHHHCCC-cEEEEecCC
Confidence            5699998 59999999999999997 699998754

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=91.41  E-value=0.32  Score=39.58  Aligned_cols=34  Identities=24%  Similarity=0.204  Sum_probs=29.7

Q ss_pred             CcceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         68 LKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        68 ~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      .+++|+|+|+|.+|..++..+.++|. +|.++.+.
T Consensus        13 ~~k~IlIlG~G~~g~~la~aa~~~G~-~vi~~d~~   46 (389)
T 3q2o_A           13 PGKTIGIIGGGQLGRMMALAAKEMGY-KIAVLDPT   46 (389)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEeCC
Confidence            44679999999999999999999998 68888754

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}

Probab=91.41  E-value=0.13  Score=43.44  Aligned_cols=33  Identities=15%  Similarity=0.228  Sum_probs=27.8

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      .++|||+|..|+-+|..|++.+..+|.|+++.+
T Consensus        19 D~IIVGsG~aG~v~A~rLse~~~~~VLvLEaG~   51 (526)
T 3t37_A           19 DIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGE   51 (526)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSTTSCEEEECSSB
T ss_pred             eEEEECccHHHHHHHHHHHhCCCCeEEEEcCCC
Confidence            499999999999999999984333799999754

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=91.37  E-value=0.21  Score=39.28  Aligned_cols=32  Identities=25%  Similarity=0.238  Sum_probs=28.6

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      .+|.|||.|.+|.-+|..|++.|. +|+++.|+
T Consensus         8 ~~I~iIG~G~mG~~~a~~l~~~G~-~V~~~dr~   39 (303)
T 3g0o_A            8 FHVGIVGLGSMGMGAARSCLRAGL-STWGADLN   39 (303)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCC-eEEEEECC
Confidence            579999999999999999999997 69988664

>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A*

Probab=91.36  E-value=0.24  Score=38.48  Aligned_cols=32  Identities=22%  Similarity=0.259  Sum_probs=28.4

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         71 TVIVLGA-GDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        71 ~VvViGg-G~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      +|+|.|| |++|..++..|.+.|. +|+++.|..
T Consensus         2 ~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~   34 (312)
T 3ko8_A            2 RIVVTGGAGFIGSHLVDKLVELGY-EVVVVDNLS   34 (312)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-EEEEECCCS
T ss_pred             EEEEECCCChHHHHHHHHHHhCCC-EEEEEeCCC
Confidence            5899997 9999999999999997 699998754

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=91.35  E-value=0.23  Score=38.33  Aligned_cols=33  Identities=18%  Similarity=0.336  Sum_probs=28.3

Q ss_pred             ceEEEEcC---ChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         70 GTVIVLGA---GDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        70 ~~VvViGg---G~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      ++++|.||   |.+|..+|..|++.|+ +|.++.|+.
T Consensus         7 k~vlVTGas~~~gIG~~~a~~l~~~G~-~V~~~~r~~   42 (275)
T 2pd4_A            7 KKGLIVGVANNKSIAYGIAQSCFNQGA-TLAFTYLNE   42 (275)
T ss_dssp             CEEEEECCCSTTSHHHHHHHHHHTTTC-EEEEEESST
T ss_pred             CEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEeCCH
Confidence            45888887   6999999999999998 699998763

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=91.35  E-value=0.17  Score=42.86  Aligned_cols=33  Identities=30%  Similarity=0.318  Sum_probs=29.3

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      ++|.|||+|.+|..+|..|++.|. +|+++.++.
T Consensus         6 ~kVgVIGaG~MG~~IA~~la~aG~-~V~l~D~~~   38 (483)
T 3mog_A            6 QTVAVIGSGTMGAGIAEVAASHGH-QVLLYDISA   38 (483)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTC-CEEEECSCH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCC-eEEEEECCH
Confidence            569999999999999999999997 699987653

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=91.34  E-value=0.21  Score=42.30  Aligned_cols=32  Identities=22%  Similarity=0.218  Sum_probs=29.0

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      .++|||+|..|+-+|..|++.|. +|.++++..
T Consensus         7 d~~iiG~G~~g~~~a~~l~~~~~-~v~~~e~~~   38 (504)
T 1n4w_A            7 PAVVIGTGYGAAVSALRLGEAGV-QTLMLEMGQ   38 (504)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-CEEEEESSC
T ss_pred             CEEEECCCHHHHHHHHHHHhCCC-cEEEEeCCC
Confidence            49999999999999999999986 699999765

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=91.32  E-value=0.48  Score=40.10  Aligned_cols=49  Identities=14%  Similarity=0.168  Sum_probs=37.1

Q ss_pred             HHHHHcCcEEEeCCcceEEEc-cCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEccccc
Q psy16200        115 QLAWEEKCEFLPFMSPVQVDV-KDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGST  178 (183)
Q Consensus       115 ~~~~~~gv~~~~~~~~~~i~~-~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~  178 (183)
                      +.+.+.|+++++++.+.+|.. +++++.+|++             .+|+  ++.||.||.+.|+.
T Consensus       264 r~~~~~Gg~i~l~t~V~~I~~d~~g~v~gV~~-------------~~G~--~i~Ad~VI~a~~~~  313 (475)
T 3p1w_A          264 RMCAINGGTFMLNKNVVDFVFDDDNKVCGIKS-------------SDGE--IAYCDKVICDPSYV  313 (475)
T ss_dssp             HHHHHC--CEESSCCEEEEEECTTSCEEEEEE-------------TTSC--EEEEEEEEECGGGC
T ss_pred             HHHHHcCCEEEeCCeEEEEEEecCCeEEEEEE-------------CCCc--EEECCEEEECCCcc
Confidence            345678999999999999986 6677877765             2333  58999999999998

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=91.32  E-value=0.19  Score=42.57  Aligned_cols=35  Identities=29%  Similarity=0.376  Sum_probs=30.4

Q ss_pred             CcceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         68 LKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        68 ~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      .+++|+|||.|.+|..+|..|..+|+ +|+++.++.
T Consensus       256 ~GktVgIIG~G~IG~~vA~~l~~~G~-~Viv~d~~~  290 (479)
T 1v8b_A          256 SGKIVVICGYGDVGKGCASSMKGLGA-RVYITEIDP  290 (479)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHHTC-EEEEECSCH
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhCcC-EEEEEeCCh
Confidence            45669999999999999999999998 699987653

>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*

Probab=91.29  E-value=0.25  Score=37.80  Aligned_cols=33  Identities=21%  Similarity=0.389  Sum_probs=28.2

Q ss_pred             ceEEEEcC---ChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         70 GTVIVLGA---GDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        70 ~~VvViGg---G~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      ++++|.||   |.+|..+|+.|++.|+ +|.++.|+.
T Consensus         9 k~vlVTGas~~~gIG~~ia~~l~~~G~-~V~~~~r~~   44 (261)
T 2wyu_A            9 KKALVMGVTNQRSLGFAIAAKLKEAGA-EVALSYQAE   44 (261)
T ss_dssp             CEEEEESCCSSSSHHHHHHHHHHHHTC-EEEEEESCG
T ss_pred             CEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEcCCH
Confidence            45888887   6999999999999998 699998763

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=91.24  E-value=0.22  Score=38.48  Aligned_cols=31  Identities=26%  Similarity=0.230  Sum_probs=27.5

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      +|.|||+|.+|.-+|..|.+.|. +|+++.|+
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~~~   32 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQ   32 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence            58999999999999999999987 69888664

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=91.24  E-value=0.28  Score=37.51  Aligned_cols=32  Identities=22%  Similarity=0.479  Sum_probs=26.7

Q ss_pred             ceEEEEcC-Ch--hHHHHHHHHHHcCCceEEEEEee
Q psy16200         70 GTVIVLGA-GD--TAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        70 ~~VvViGg-G~--~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      ++++|.|| |.  +|..+|+.|++.|+ +|.++.|+
T Consensus         8 k~vlVTGasg~~GIG~~ia~~l~~~G~-~V~~~~r~   42 (266)
T 3oig_A            8 RNIVVMGVANKRSIAWGIARSLHEAGA-RLIFTYAG   42 (266)
T ss_dssp             CEEEEECCCSTTSHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             CEEEEEcCCCCCcHHHHHHHHHHHCCC-EEEEecCc
Confidence            45888886 56  99999999999998 69988775

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=91.21  E-value=0.22  Score=41.84  Aligned_cols=33  Identities=15%  Similarity=0.248  Sum_probs=29.7

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      -++.|||.|++|+-+|..|++.|. +|+++.++.
T Consensus         9 ~~~~vIGlG~vG~~~A~~La~~G~-~V~~~D~~~   41 (446)
T 4a7p_A            9 VRIAMIGTGYVGLVSGACFSDFGH-EVVCVDKDA   41 (446)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCS
T ss_pred             eEEEEEcCCHHHHHHHHHHHHCCC-EEEEEeCCH
Confidence            469999999999999999999997 799998764

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=91.21  E-value=0.19  Score=42.78  Aligned_cols=35  Identities=31%  Similarity=0.310  Sum_probs=30.4

Q ss_pred             CcceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         68 LKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        68 ~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      .+++|+|||.|.+|..+|..|..+|+ +|+++.|+.
T Consensus       276 ~GktVgIIG~G~IG~~vA~~l~~~G~-~V~v~d~~~  310 (494)
T 3d64_A          276 AGKIAVVAGYGDVGKGCAQSLRGLGA-TVWVTEIDP  310 (494)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECSCH
T ss_pred             CCCEEEEEccCHHHHHHHHHHHHCCC-EEEEEeCCh
Confidence            45669999999999999999999998 699987653

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=91.20  E-value=0.24  Score=37.79  Aligned_cols=33  Identities=18%  Similarity=0.319  Sum_probs=27.8

Q ss_pred             cceEEEEcC---ChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         69 KGTVIVLGA---GDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        69 ~~~VvViGg---G~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      +++|+|.||   |.+|..+|+.|++.|+ +|.++.|+
T Consensus        14 ~k~vlITGa~~~~giG~~ia~~l~~~G~-~V~~~~r~   49 (271)
T 3ek2_A           14 GKRILLTGLLSNRSIAYGIAKACKREGA-ELAFTYVG   49 (271)
T ss_dssp             TCEEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             CCEEEEeCCCCCCcHHHHHHHHHHHcCC-CEEEEecc
Confidence            345888886   5899999999999998 69999875

>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*

Probab=91.17  E-value=0.28  Score=39.46  Aligned_cols=33  Identities=18%  Similarity=0.212  Sum_probs=29.3

Q ss_pred             ceEEEEcC-ChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         70 GTVIVLGA-GDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        70 ~~VvViGg-G~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      ++|+|.|| |++|..++..|.+.|. +|+++.|+.
T Consensus        29 k~vlVtGatG~IG~~l~~~L~~~g~-~V~~~~r~~   62 (381)
T 1n7h_A           29 KIALITGITGQDGSYLTEFLLGKGY-EVHGLIRRS   62 (381)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCC
T ss_pred             CeEEEEcCCchHHHHHHHHHHHCCC-EEEEEecCC
Confidence            56999986 9999999999999997 799998864

>4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A*

Probab=91.08  E-value=0.35  Score=37.45  Aligned_cols=37  Identities=22%  Similarity=0.247  Sum_probs=29.0

Q ss_pred             CCCcceEEEE-c-CChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         66 PILKGTVIVL-G-AGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        66 ~~~~~~VvVi-G-gG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      ..+.+|+++| | ++-+|..+|+.|++.|+ +|.+..|+.
T Consensus         7 ~~L~GK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~   45 (261)
T 4h15_A            7 LNLRGKRALITAGTKGAGAATVSLFLELGA-QVLTTARAR   45 (261)
T ss_dssp             CCCTTCEEEESCCSSHHHHHHHHHHHHTTC-EEEEEESSC
T ss_pred             cCCCCCEEEEeccCcHHHHHHHHHHHHcCC-EEEEEECCc
Confidence            3566776666 4 55689999999999998 699999864

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=91.08  E-value=0.27  Score=38.50  Aligned_cols=32  Identities=19%  Similarity=0.340  Sum_probs=27.5

Q ss_pred             ceEEEEcCC---hhHHHHHHHHHHcCCceEEEEEee
Q psy16200         70 GTVIVLGAG---DTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        70 ~~VvViGgG---~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      +.++|.||+   .+|..+|+.|++.|+ +|.++.|+
T Consensus        31 k~vlVTGasg~~GIG~~ia~~la~~G~-~V~~~~r~   65 (296)
T 3k31_A           31 KKGVIIGVANDKSLAWGIAKAVCAQGA-EVALTYLS   65 (296)
T ss_dssp             CEEEEECCCSTTSHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             CEEEEEeCCCCCCHHHHHHHHHHHCCC-EEEEEeCC
Confidence            448888875   899999999999998 69999876

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=91.02  E-value=0.13  Score=44.11  Aligned_cols=31  Identities=26%  Similarity=0.365  Sum_probs=28.0

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      .++|||+|..|+-+|..|++ |. +|.|+++.+
T Consensus        28 D~IIVGsG~AG~v~A~rLse-g~-~VlvLEaG~   58 (536)
T 1ju2_A           28 DYVIVGGGTSGCPLAATLSE-KY-KVLVLERGS   58 (536)
T ss_dssp             EEEEECCSTTHHHHHHHHTT-TS-CEEEECSSB
T ss_pred             cEEEECccHHHHHHHHHHhc-CC-cEEEEecCC
Confidence            49999999999999999999 86 699999853

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=91.00  E-value=0.16  Score=39.82  Aligned_cols=32  Identities=19%  Similarity=0.354  Sum_probs=28.0

Q ss_pred             cceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      +++++|+|+|-+|..+|..|++.|  +|+++.|+
T Consensus       128 ~k~vlV~GaGgiG~aia~~L~~~G--~V~v~~r~  159 (287)
T 1nvt_A          128 DKNIVIYGAGGAARAVAFELAKDN--NIIIANRT  159 (287)
T ss_dssp             SCEEEEECCSHHHHHHHHHHTSSS--EEEEECSS
T ss_pred             CCEEEEECchHHHHHHHHHHHHCC--CEEEEECC
Confidence            356999999999999999999998  69998764

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=90.99  E-value=0.23  Score=39.87  Aligned_cols=34  Identities=18%  Similarity=0.210  Sum_probs=29.5

Q ss_pred             cceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      +++|.|||.|.+|..+|..|..+|. +|+.+.|+.
T Consensus       155 g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~  188 (330)
T 2gcg_A          155 QSTVGIIGLGRIGQAIARRLKPFGV-QRFLYTGRQ  188 (330)
T ss_dssp             TCEEEEECCSHHHHHHHHHHGGGTC-CEEEEESSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCC
Confidence            4569999999999999999999998 698887653

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=90.99  E-value=0.23  Score=39.54  Aligned_cols=32  Identities=22%  Similarity=0.285  Sum_probs=28.6

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      .+|.|||.|.+|.-+|..|++.|. +|+++.|+
T Consensus        32 ~~I~iIG~G~mG~~~a~~l~~~G~-~V~~~dr~   63 (320)
T 4dll_A           32 RKITFLGTGSMGLPMARRLCEAGY-ALQVWNRT   63 (320)
T ss_dssp             SEEEEECCTTTHHHHHHHHHHTTC-EEEEECSC
T ss_pred             CEEEEECccHHHHHHHHHHHhCCC-eEEEEcCC
Confidence            479999999999999999999997 69988764

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=90.98  E-value=0.25  Score=40.29  Aligned_cols=32  Identities=34%  Similarity=0.274  Sum_probs=27.3

Q ss_pred             CcceEEEEcCChhHHHHHHHHHHcCCceEEEEE
Q psy16200         68 LKGTVIVLGAGDTAFDCATSALRCGANKVLVVF  100 (183)
Q Consensus        68 ~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~  100 (183)
                      .+++|+|+|.|.+|..+|..|.++|+ +|.+..
T Consensus       174 ~GktV~I~G~GnVG~~~A~~l~~~Ga-kVvvsD  205 (355)
T 1c1d_A          174 DGLTVLVQGLGAVGGSLASLAAEAGA-QLLVAD  205 (355)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEC
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCC-EEEEEe
Confidence            34569999999999999999999998 587553

>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1

Probab=90.95  E-value=0.22  Score=44.77  Aligned_cols=34  Identities=21%  Similarity=0.277  Sum_probs=31.1

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      .+|+|||+|-+|+++|..|++.|..+++|+....
T Consensus       412 ~~vlvvG~GglG~~~~~~L~~~Gvg~i~l~D~d~  445 (805)
T 2nvu_B          412 CKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDT  445 (805)
T ss_dssp             CCEEEECCSSHHHHHHHHHHTTTCCEEEEEECCB
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCcEEEECCCe
Confidence            4699999999999999999999998999999743

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A

Probab=90.88  E-value=0.4  Score=38.99  Aligned_cols=34  Identities=29%  Similarity=0.343  Sum_probs=29.8

Q ss_pred             CcceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         68 LKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        68 ~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      .+++|.|+|+|..|..++..+.++|. +|.++.+.
T Consensus        11 ~~~~IlIlG~G~lg~~la~aa~~lG~-~viv~d~~   44 (377)
T 3orq_A           11 FGATIGIIGGGQLGKMMAQSAQKMGY-KVVVLDPS   44 (377)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            45679999999999999999999998 68888764

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=90.84  E-value=0.32  Score=38.08  Aligned_cols=34  Identities=24%  Similarity=0.435  Sum_probs=27.3

Q ss_pred             CcceEEEE-c-CChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         68 LKGTVIVL-G-AGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        68 ~~~~VvVi-G-gG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      +.+||+|| | ++-+|..+|..|++.|+ +|.++.|+
T Consensus        27 L~gKvalVTGas~GIG~aiA~~la~~Ga-~V~i~~r~   62 (273)
T 4fgs_A           27 LNAKIAVITGATSGIGLAAAKRFVAEGA-RVFITGRR   62 (273)
T ss_dssp             TTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             hCCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            55776666 4 45699999999999998 69999875

>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A*

Probab=90.84  E-value=0.3  Score=40.97  Aligned_cols=34  Identities=26%  Similarity=0.358  Sum_probs=31.1

Q ss_pred             cceEEEEcCChhHHHHHHHHHHcCC--ceEEEEE----ee
Q psy16200         69 KGTVIVLGAGDTAFDCATSALRCGA--NKVLVVF----RK  102 (183)
Q Consensus        69 ~~~VvViGgG~~g~e~A~~l~~~G~--~~V~lv~----r~  102 (183)
                      +++|+|+|+|-.|.-++..|...|+  ++|+++.    |.
T Consensus       186 ~~rvlvlGAGgAg~aia~~L~~~G~~~~~I~vvd~~~~R~  225 (439)
T 2dvm_A          186 EITLALFGAGAAGFATLRILTEAGVKPENVRVVELVNGKP  225 (439)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHHTTCCGGGEEEEEEETTEE
T ss_pred             CCEEEEECccHHHHHHHHHHHHcCCCcCeEEEEEccCCCc
Confidence            3569999999999999999999998  7899999    86

>3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A*

Probab=90.84  E-value=0.74  Score=39.11  Aligned_cols=54  Identities=20%  Similarity=0.227  Sum_probs=35.8

Q ss_pred             ceEEEEc-CChhHHHHHHHHHHcCCceEEEEEeecCCcCCCCHHHHHHHHHcCcEE
Q psy16200         70 GTVIVLG-AGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEF  124 (183)
Q Consensus        70 ~~VvViG-gG~~g~e~A~~l~~~G~~~V~lv~r~~~~~~~~~~~~~~~~~~~gv~~  124 (183)
                      +.++|.| +|.+|..+|+.|++.|+++|.++.|++.. .+...+....+.+.|..+
T Consensus       240 ~~vLITGgsgGIG~alA~~La~~Ga~~vvl~~R~~~~-~~~~~~l~~~l~~~g~~v  294 (496)
T 3mje_A          240 GSVLVTGGTGGIGGRVARRLAEQGAAHLVLTSRRGAD-APGAAELRAELEQLGVRV  294 (496)
T ss_dssp             SEEEEETCSSHHHHHHHHHHHHTTCSEEEEEESSGGG-STTHHHHHHHHHHTTCEE
T ss_pred             CEEEEECCCCchHHHHHHHHHHCCCcEEEEEeCCCCC-hHHHHHHHHHHHhcCCeE
Confidence            5577776 68899999999999998778888776422 222233334455556544

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=90.80  E-value=0.26  Score=38.16  Aligned_cols=35  Identities=23%  Similarity=0.444  Sum_probs=27.5

Q ss_pred             Ccce-EEEEcC-Ch--hHHHHHHHHHHcCCceEEEEEeec
Q psy16200         68 LKGT-VIVLGA-GD--TAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        68 ~~~~-VvViGg-G~--~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      +.+| ++|.|| |.  +|..+|+.|++.|+ +|.++.|+.
T Consensus        24 l~~k~vlVTGasg~~GIG~~ia~~l~~~G~-~V~~~~r~~   62 (280)
T 3nrc_A           24 LAGKKILITGLLSNKSIAYGIAKAMHREGA-ELAFTYVGQ   62 (280)
T ss_dssp             TTTCEEEECCCCSTTCHHHHHHHHHHHTTC-EEEEEECTT
T ss_pred             cCCCEEEEECCCCCCCHHHHHHHHHHHcCC-EEEEeeCch
Confidence            3345 777775 56  99999999999998 699998763

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=90.80  E-value=0.24  Score=37.86  Aligned_cols=31  Identities=26%  Similarity=0.419  Sum_probs=27.2

Q ss_pred             eEEEEcCChhHHHHHHHHHHcC-CceEEEEEee
Q psy16200         71 TVIVLGAGDTAFDCATSALRCG-ANKVLVVFRK  102 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G-~~~V~lv~r~  102 (183)
                      +|.|||+|.+|.-+|..|.+.| . +|+++.|+
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~-~v~~~~r~   33 (263)
T 1yqg_A            2 NVYFLGGGNMAAAVAGGLVKQGGY-RIYIANRG   33 (263)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSC-EEEEECSS
T ss_pred             EEEEECchHHHHHHHHHHHHCCCC-eEEEECCC
Confidence            5899999999999999999988 6 69887654

>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*

Probab=90.74  E-value=0.35  Score=38.19  Aligned_cols=32  Identities=25%  Similarity=0.225  Sum_probs=28.1

Q ss_pred             ceEEEEc-CChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         70 GTVIVLG-AGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        70 ~~VvViG-gG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      ++|+|.| +|++|..++..|.+.|. +|+++.|.
T Consensus         3 ~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~   35 (348)
T 1ek6_A            3 EKVLVTGGAGYIGSHTVLELLEAGY-LPVVIDNF   35 (348)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTC-CEEEEECS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC-EEEEEecC
Confidence            5699998 59999999999999997 69999875

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=90.73  E-value=0.3  Score=36.52  Aligned_cols=34  Identities=29%  Similarity=0.376  Sum_probs=28.8

Q ss_pred             ceEEEEc-CChhHHHHHHHHHHcCCc-eEEEEEeec
Q psy16200         70 GTVIVLG-AGDTAFDCATSALRCGAN-KVLVVFRKG  103 (183)
Q Consensus        70 ~~VvViG-gG~~g~e~A~~l~~~G~~-~V~lv~r~~  103 (183)
                      ++|+|.| +|.+|..++..|++.|.. +|+++.|+.
T Consensus        19 ~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~   54 (242)
T 2bka_A           19 KSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRK   54 (242)
T ss_dssp             CEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSC
T ss_pred             CeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCC
Confidence            5699998 599999999999999961 599998864

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=90.70  E-value=0.25  Score=39.69  Aligned_cols=33  Identities=12%  Similarity=-0.014  Sum_probs=28.2

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      .||+|||+|.+|.-+|..|+..|..+|+++.+.
T Consensus        10 ~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~   42 (331)
T 1pzg_A           10 KKVAMIGSGMIGGTMGYLCALRELADVVLYDVV   42 (331)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence            479999999999999999999885248888764

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=90.69  E-value=0.43  Score=36.25  Aligned_cols=34  Identities=26%  Similarity=0.430  Sum_probs=27.5

Q ss_pred             Ccce-EEEEc-CChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         68 LKGT-VIVLG-AGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        68 ~~~~-VvViG-gG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      +.+| ++|.| +|.+|..+|+.|++.|+ +|.++.|+
T Consensus        10 l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~   45 (252)
T 3f1l_A           10 LNDRIILVTGASDGIGREAAMTYARYGA-TVILLGRN   45 (252)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence            4455 77776 57899999999999998 69998875

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=90.65  E-value=0.31  Score=39.11  Aligned_cols=33  Identities=15%  Similarity=0.070  Sum_probs=28.4

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      .||+|||+|.+|.-+|..|+..|..+|+++.+.
T Consensus        15 ~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~   47 (328)
T 2hjr_A           15 KKISIIGAGQIGSTIALLLGQKDLGDVYMFDII   47 (328)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence            579999999999999999999886248888764

>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*

Probab=90.64  E-value=0.27  Score=37.68  Aligned_cols=33  Identities=21%  Similarity=0.369  Sum_probs=27.8

Q ss_pred             ceEEEEcC---ChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         70 GTVIVLGA---GDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        70 ~~VvViGg---G~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      ++++|.||   |.+|..+|+.|++.|+ +|.++.|+.
T Consensus        10 k~vlVTGas~~~gIG~~ia~~l~~~G~-~V~~~~r~~   45 (265)
T 1qsg_A           10 KRILVTGVASKLSIAYGIAQAMHREGA-ELAFTYQND   45 (265)
T ss_dssp             CEEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEESST
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEEcCcH
Confidence            44788886   6999999999999998 699998753

>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}

Probab=90.60  E-value=0.26  Score=38.22  Aligned_cols=33  Identities=21%  Similarity=0.324  Sum_probs=27.7

Q ss_pred             ceEEEEcC---ChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         70 GTVIVLGA---GDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        70 ~~VvViGg---G~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      ++++|.||   |.+|..+|..|++.|+ +|.++.|+.
T Consensus        22 k~vlVTGas~~~gIG~~ia~~l~~~G~-~V~~~~r~~   57 (285)
T 2p91_A           22 KRALITGVANERSIAYGIAKSFHREGA-QLAFTYATP   57 (285)
T ss_dssp             CEEEECCCSSTTSHHHHHHHHHHHTTC-EEEEEESSG
T ss_pred             CEEEEECCCCCCcHHHHHHHHHHHcCC-EEEEEeCCH
Confidence            44778887   5999999999999998 699998753

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=90.57  E-value=0.37  Score=36.93  Aligned_cols=36  Identities=11%  Similarity=0.178  Sum_probs=28.1

Q ss_pred             CCcce-EEEEc-CChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         67 ILKGT-VIVLG-AGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        67 ~~~~~-VvViG-gG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      .+.+| ++|.| ++.+|..+|+.|++.|+ +|.++.|..
T Consensus         8 ~l~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~   45 (262)
T 3ksu_A            8 DLKNKVIVIAGGIKNLGALTAKTFALESV-NLVLHYHQA   45 (262)
T ss_dssp             CCTTCEEEEETCSSHHHHHHHHHHTTSSC-EEEEEESCG
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEecCc
Confidence            34455 67776 57899999999999998 699987653

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=90.55  E-value=0.17  Score=40.56  Aligned_cols=33  Identities=15%  Similarity=0.113  Sum_probs=29.0

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcC-------CceEEEEEeec
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCG-------ANKVLVVFRKG  103 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G-------~~~V~lv~r~~  103 (183)
                      .||.|||+|.+|.-+|..|++.|       . +|+++.|+.
T Consensus         9 mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~-~V~~~~r~~   48 (354)
T 1x0v_A            9 KKVCIVGSGNWGSAIAKIVGGNAAQLAQFDP-RVTMWVFEE   48 (354)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHCTTEEE-EEEEECCCC
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCcccCCCC-eEEEEEcCh
Confidence            46999999999999999999987       5 699998764

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=90.52  E-value=0.42  Score=37.98  Aligned_cols=33  Identities=18%  Similarity=0.091  Sum_probs=29.4

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcC-CceEEEEEeec
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCG-ANKVLVVFRKG  103 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G-~~~V~lv~r~~  103 (183)
                      .+|.|||.|.+|.-+|..|++.| . +|+++.|+.
T Consensus        25 m~IgvIG~G~mG~~lA~~L~~~G~~-~V~~~dr~~   58 (317)
T 4ezb_A           25 TTIAFIGFGEAAQSIAGGLGGRNAA-RLAAYDLRF   58 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCS-EEEEECGGG
T ss_pred             CeEEEECccHHHHHHHHHHHHcCCC-eEEEEeCCC
Confidence            57999999999999999999999 6 699887763

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=90.52  E-value=0.85  Score=34.67  Aligned_cols=33  Identities=27%  Similarity=0.268  Sum_probs=27.1

Q ss_pred             ceEEEEc-CChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         70 GTVIVLG-AGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        70 ~~VvViG-gG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      +.++|.| +|.+|..+|+.|++.|+ +|.++.|+.
T Consensus         8 k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~   41 (252)
T 3h7a_A            8 ATVAVIGAGDYIGAEIAKKFAAEGF-TVFAGRRNG   41 (252)
T ss_dssp             CEEEEECCSSHHHHHHHHHHHHTTC-EEEEEESSG
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCH
Confidence            4477776 56799999999999998 699998753

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=90.47  E-value=0.27  Score=38.34  Aligned_cols=31  Identities=23%  Similarity=0.267  Sum_probs=27.7

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      +|.|||+|.+|..+|..|.+.|. +|+++.|+
T Consensus         7 ~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~~~   37 (299)
T 1vpd_A            7 KVGFIGLGIMGKPMSKNLLKAGY-SLVVSDRN   37 (299)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTC-EEEEECSC
T ss_pred             eEEEECchHHHHHHHHHHHhCCC-EEEEEeCC
Confidence            69999999999999999999986 69888664

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=90.46  E-value=0.4  Score=36.88  Aligned_cols=35  Identities=29%  Similarity=0.441  Sum_probs=28.2

Q ss_pred             CCcce-EEEEc-CChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         67 ILKGT-VIVLG-AGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        67 ~~~~~-VvViG-gG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      .+.+| ++|.| +|.+|..+|..|++.|+ +|.++.|+
T Consensus        18 ~l~~k~~lVTGas~gIG~~ia~~l~~~G~-~V~~~~r~   54 (267)
T 1vl8_A           18 DLRGRVALVTGGSRGLGFGIAQGLAEAGC-SVVVASRN   54 (267)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            34445 77776 67899999999999998 69998875

>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ...

Probab=90.45  E-value=0.29  Score=37.57  Aligned_cols=33  Identities=24%  Similarity=0.281  Sum_probs=27.8

Q ss_pred             ceEEEEcC---ChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         70 GTVIVLGA---GDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        70 ~~VvViGg---G~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      +.++|.||   |.+|..+|..|++.|+ +|.++.|+.
T Consensus         8 k~vlVTGa~~s~gIG~aia~~l~~~G~-~V~~~~r~~   43 (269)
T 2h7i_A            8 KRILVSGIITDSSIAFHIARVAQEQGA-QLVLTGFDR   43 (269)
T ss_dssp             CEEEECCCSSTTSHHHHHHHHHHHTTC-EEEEEECSC
T ss_pred             CEEEEECCCCCCchHHHHHHHHHHCCC-EEEEEecCh
Confidence            44888885   8999999999999998 699988753

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=90.43  E-value=0.26  Score=39.66  Aligned_cols=33  Identities=24%  Similarity=0.241  Sum_probs=28.7

Q ss_pred             cceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      +++|.|||.|.+|..+|..|..+|. +|+.+.|+
T Consensus       146 g~~vgIIG~G~iG~~vA~~l~~~G~-~V~~~d~~  178 (333)
T 2d0i_A          146 GKKVGILGMGAIGKAIARRLIPFGV-KLYYWSRH  178 (333)
T ss_dssp             TCEEEEECCSHHHHHHHHHHGGGTC-EEEEECSS
T ss_pred             cCEEEEEccCHHHHHHHHHHHHCCC-EEEEECCC
Confidence            3569999999999999999999997 69887664

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=90.43  E-value=0.25  Score=39.00  Aligned_cols=33  Identities=24%  Similarity=0.243  Sum_probs=29.0

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      .+|.|||+|.+|..+|..|.+.|. +|+++.|+.
T Consensus        31 ~~I~iIG~G~mG~~~a~~l~~~g~-~V~~~~~~~   63 (316)
T 2uyy_A           31 KKIGFLGLGLMGSGIVSNLLKMGH-TVTVWNRTA   63 (316)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTC-CEEEECSSG
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCC-EEEEEeCCH
Confidence            569999999999999999999997 698887653

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=90.40  E-value=0.38  Score=38.17  Aligned_cols=33  Identities=15%  Similarity=0.118  Sum_probs=29.1

Q ss_pred             ceEEEEcC-ChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         70 GTVIVLGA-GDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        70 ~~VvViGg-G~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      ++|+|.|| |++|..++..|.+.|. +|+++.|+.
T Consensus        28 ~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~   61 (352)
T 1sb8_A           28 KVWLITGVAGFIGSNLLETLLKLDQ-KVVGLDNFA   61 (352)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCS
T ss_pred             CeEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCC
Confidence            56999997 9999999999999997 799998853

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=90.36  E-value=0.33  Score=38.86  Aligned_cols=34  Identities=26%  Similarity=0.162  Sum_probs=28.9

Q ss_pred             cceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      .+||.|||+|.+|..+|..++..|..+|+++.+.
T Consensus         8 ~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~   41 (315)
T 3tl2_A            8 RKKVSVIGAGFTGATTAFLLAQKELADVVLVDIP   41 (315)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCG
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEecc
Confidence            3679999999999999999998885369998764

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=90.33  E-value=0.25  Score=41.87  Aligned_cols=32  Identities=19%  Similarity=0.191  Sum_probs=28.8

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      .++|||+|..|+-+|..|++.|. +|.++++..
T Consensus        13 d~~iiG~G~~g~~~a~~l~~~~~-~v~~~e~~~   44 (507)
T 1coy_A           13 PALVIGSGYGGAVAALRLTQAGI-PTQIVEMGR   44 (507)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-CEEEECSSC
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC-cEEEEECCC
Confidence            49999999999999999999886 699999764

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=90.32  E-value=0.26  Score=39.75  Aligned_cols=34  Identities=18%  Similarity=0.168  Sum_probs=29.6

Q ss_pred             cceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      +++|.|||.|.+|..+|..|..+|. +|++..|+.
T Consensus       164 g~~vgIIG~G~iG~~vA~~l~~~G~-~V~~~dr~~  197 (333)
T 3ba1_A          164 GKRVGIIGLGRIGLAVAERAEAFDC-PISYFSRSK  197 (333)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHTTTC-CEEEECSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC-EEEEECCCc
Confidence            4569999999999999999999998 698887754

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=90.32  E-value=0.31  Score=40.22  Aligned_cols=33  Identities=18%  Similarity=0.196  Sum_probs=28.3

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCC--ceEEEEEee
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGA--NKVLVVFRK  102 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~--~~V~lv~r~  102 (183)
                      +||+|+|+|.+|..+|..|++.|.  .+|+++.|+
T Consensus         2 ~kVlIiGaGgiG~~ia~~L~~~g~~~~~V~v~~r~   36 (405)
T 4ina_A            2 AKVLQIGAGGVGGVVAHKMAMNREVFSHITLASRT   36 (405)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTCTTTCCEEEEEESC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCceEEEEEECC
Confidence            469999999999999999999883  369888875

>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}

Probab=90.31  E-value=0.4  Score=36.04  Aligned_cols=32  Identities=25%  Similarity=0.263  Sum_probs=27.3

Q ss_pred             ceEEEEc-CChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         70 GTVIVLG-AGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        70 ~~VvViG-gG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      ++++|.| +|.+|..+|..|++.|+ +|.++.|+
T Consensus         3 k~vlItGasggiG~~~a~~l~~~G~-~V~~~~r~   35 (250)
T 2cfc_A            3 RVAIVTGASSGNGLAIATRFLARGD-RVAALDLS   35 (250)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence            4588887 58999999999999997 69998875

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=90.31  E-value=0.34  Score=38.53  Aligned_cols=34  Identities=21%  Similarity=0.232  Sum_probs=29.2

Q ss_pred             CcceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         68 LKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        68 ~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      .+++|.|||.|.+|..+|..|..+|. +|..+.|+
T Consensus       141 ~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~d~~  174 (307)
T 1wwk_A          141 EGKTIGIIGFGRIGYQVAKIANALGM-NILLYDPY  174 (307)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             CCceEEEEccCHHHHHHHHHHHHCCC-EEEEECCC
Confidence            34569999999999999999999998 69887664

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=90.27  E-value=0.2  Score=39.42  Aligned_cols=33  Identities=18%  Similarity=0.007  Sum_probs=29.3

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      .+|.|||.|.+|.-+|..|++.|. +|+++.|+.
T Consensus        16 ~~I~vIG~G~mG~~~A~~l~~~G~-~V~~~dr~~   48 (296)
T 3qha_A           16 LKLGYIGLGNMGAPMATRMTEWPG-GVTVYDIRI   48 (296)
T ss_dssp             CCEEEECCSTTHHHHHHHHTTSTT-CEEEECSST
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCC-eEEEEeCCH
Confidence            469999999999999999999997 699987754

>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A

Probab=90.26  E-value=0.37  Score=39.91  Aligned_cols=33  Identities=18%  Similarity=0.096  Sum_probs=28.9

Q ss_pred             CcceEEEEcCChhHHHHHHHHHHcCCceEEEEEe
Q psy16200         68 LKGTVIVLGAGDTAFDCATSALRCGANKVLVVFR  101 (183)
Q Consensus        68 ~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r  101 (183)
                      .+++|+|+|+|..|..++..+.++|. +|.++.+
T Consensus        34 ~~~~IlIlG~G~lg~~~~~aa~~lG~-~v~v~d~   66 (419)
T 4e4t_A           34 PGAWLGMVGGGQLGRMFCFAAQSMGY-RVAVLDP   66 (419)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEECC
Confidence            45679999999999999999999998 5888864

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=90.26  E-value=1.2  Score=34.45  Aligned_cols=34  Identities=26%  Similarity=0.320  Sum_probs=27.1

Q ss_pred             Ccce-EEEEc-CChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         68 LKGT-VIVLG-AGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        68 ~~~~-VvViG-gG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      +.+| ++|.| ++.+|..+|+.|++.|+ +|.++.|+
T Consensus        31 l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~   66 (275)
T 4imr_A           31 LRGRTALVTGSSRGIGAAIAEGLAGAGA-HVILHGVK   66 (275)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCC
Confidence            4455 55555 57899999999999998 69999875

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=90.25  E-value=0.27  Score=38.93  Aligned_cols=32  Identities=13%  Similarity=0.281  Sum_probs=27.6

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCC-ceEEEEEee
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGA-NKVLVVFRK  102 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~-~~V~lv~r~  102 (183)
                      ||+|||+|.+|.-+|..|++.|. .+|+++.+.
T Consensus         3 kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~   35 (309)
T 1hyh_A            3 KIGIIGLGNVGAAVAHGLIAQGVADDYVFIDAN   35 (309)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCC
Confidence            69999999999999999999882 369998764

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=90.24  E-value=0.14  Score=38.45  Aligned_cols=30  Identities=17%  Similarity=0.169  Sum_probs=26.4

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEE
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVF  100 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~  100 (183)
                      .||.|||+|.+|.-+|..|.+.|. +|+++.
T Consensus        24 mkI~IIG~G~mG~~la~~l~~~g~-~V~~v~   53 (220)
T 4huj_A           24 TTYAIIGAGAIGSALAERFTAAQI-PAIIAN   53 (220)
T ss_dssp             CCEEEEECHHHHHHHHHHHHHTTC-CEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC-EEEEEE
Confidence            469999999999999999999997 688843

>1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A*

Probab=90.24  E-value=0.65  Score=39.01  Aligned_cols=53  Identities=11%  Similarity=-0.017  Sum_probs=39.9

Q ss_pred             ceEEEEcCChhHHH-HHHHHHHcCCceEEEEEeecCCcCCCCHHHHHHHHHcCcEEEeCCcc
Q psy16200         70 GTVIVLGAGDTAFD-CATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFMSP  130 (183)
Q Consensus        70 ~~VvViGgG~~g~e-~A~~l~~~G~~~V~lv~r~~~~~~~~~~~~~~~~~~~gv~~~~~~~~  130 (183)
                      ++|.|||-|-+|+. +|++|.++|. +|+....+.      . ...+.+.+.|+++..+...
T Consensus        19 ~~i~viG~G~sG~s~~A~~l~~~G~-~V~~~D~~~------~-~~~~~l~~~gi~~~~g~~~   72 (475)
T 1p3d_A           19 QQIHFIGIGGAGMSGIAEILLNEGY-QISGSDIAD------G-VVTQRLAQAGAKIYIGHAE   72 (475)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHHHTC-EEEEEESCC------S-HHHHHHHHTTCEEEESCCG
T ss_pred             CEEEEEeecHHHHHHHHHHHHhCCC-EEEEECCCC------C-HHHHHHHhCCCEEECCCCH
Confidence            56999999999998 9999999997 699886542      1 1234566778888766443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	183
d1gtea3	153	c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenas	6e-37
d1ps9a2	162	c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-t	4e-05
d1gtea4	196	c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine de	6e-05
d1mo9a1	261	c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketop	7e-04
d1lqta1	216	c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA	0.003

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]} Length = 153

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  123 bits (309), Expect = 6e-37
 Identities = 101/154 (65%), Positives = 119/154 (77%), Gaps = 2/154 (1%)

Query: 24  NVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFD 83
               IFQGLT++ GFYTSK FLP VA SSK G+C       LP ++G VIVLGAGDTAFD
Sbjct: 2   KTDDIFQGLTQDQGFYTSKDFLPLVAKSSKAGMCACHSP--LPSIRGAVIVLGAGDTAFD 59

Query: 84  CATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFMSPVQVDVKDNKIAGM 143
           CATSALRCGA +V +VFRKG  NIRAVPEEV+LA EEKCEFLPF+SP +V VK  +I  +
Sbjct: 60  CATSALRCGARRVFLVFRKGFVNIRAVPEEVELAKEEKCEFLPFLSPRKVIVKGGRIVAV 119

Query: 144 QFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGS 177
           QF RTEQ+E G+W EDE+Q + LKA+ +ISAFGS
Sbjct: 120 QFVRTEQDETGKWNEDEDQIVHLKADVVISAFGS 153

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 162

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 39.9 bits (92), Expect = 4e-05
 Identities = 14/129 (10%), Positives = 33/129 (25%), Gaps = 24/129 (18%)

Query: 72  VIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFMS-P 130
           V ++G G   FD A    + G +    +             +       +   +P     
Sbjct: 32  VAIIGCGGIGFDTAMYLSQPGESTSQNIAGFCNEWGIDSSLQQAGGLSPQGMQIPRSPRQ 91

Query: 131 VQVDVKDNKIAGMQFNRT-----------------------EQNEKGEWVEDEEQRIKLK 167
           + +  +     G    +T                       + ++ G  V    +   L 
Sbjct: 92  IVMLQRKASKPGQGLGKTTGWIHRTTLLSRGVKMIPGVSYQKIDDDGLHVVINGETQVLA 151

Query: 168 ANYIISAFG 176
            + ++   G
Sbjct: 152 VDNVVICAG 160

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} Length = 196

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 39.7 bits (91), Expect = 6e-05
 Identities = 18/105 (17%), Positives = 39/105 (37%), Gaps = 8/105 (7%)

Query: 72  VIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFMSPV 131
           + +LGAG  +  CA+   R G + + +  ++             L+  E  +F      V
Sbjct: 7   IALLGAGPASISCASFLARLGYSDITIFEKQ--------EYVGGLSTSEIPQFRLPYDVV 58

Query: 132 QVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFG 176
             +++  K  G++    +   + E   +  +    KA +I     
Sbjct: 59  NFEIELMKDLGVKIICGKSLSENEITLNTLKEEGYKAAFIGIGLP 103

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Length = 261

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

 Score = 36.9 bits (84), Expect = 7e-04
 Identities = 14/113 (12%), Positives = 31/113 (27%), Gaps = 8/113 (7%)

Query: 72  VIVLGAGDTAFDCATSALRCGANKVLVVFRKG----CTNIRAVPEEVQLAWEEKCE---- 123
            I +G G      +      G  +++V         C +   VP  +      +      
Sbjct: 45  AIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCPHNACVPHHLFSDCAAELMLART 104

Query: 124 FLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFG 176
           F        +  K   I  +             + + + + +L   YI++   
Sbjct: 105 FSGQYWFPDMTEKVVGIKEVVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPA 157

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 216

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 34.9 bits (79), Expect = 0.003
 Identities = 22/109 (20%), Positives = 38/109 (34%), Gaps = 22/109 (20%)

Query: 66  PILKG-TVIVLGAGDTAFDCATSAL--------------------RCGANKVLVVFRKGC 104
           P L G   +V+G G+ A D A   L                      G  +V++V R+G 
Sbjct: 35  PDLSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGP 94

Query: 105 TNIRAVPEEVQLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEK 153
                   E++   +        + P ++D   ++ A       +QN K
Sbjct: 95  LQAAFTTLELRELADLD-GVDVVIDPAELDGITDEDAAAVGKVCKQNIK 142

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	183
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	99.94
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	99.88
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	99.86
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	99.82
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	99.8
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	99.78
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	99.78
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	99.78
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	99.78
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	99.76
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	99.75
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	99.74
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	99.74
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	99.73
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	99.71
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	99.7
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	99.69
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	99.69
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	99.67
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	99.67
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	99.66
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	99.66
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	99.66
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	99.65
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	99.65
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	99.48
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	99.29
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	99.16
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	99.07
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	99.07
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	99.0
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	98.87
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	98.84
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	98.83
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	98.83
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	98.77
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	98.75
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	98.7
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	98.67
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	98.64
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	98.6
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	98.58
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	98.51
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	98.5
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	98.5
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	98.48
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	98.48
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	98.47
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	98.41
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	98.41
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	98.41
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	98.36
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	98.32
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	98.3
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.29
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	98.27
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	98.25
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.24
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	98.23
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	98.19
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.0
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	98.0
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	97.98
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	97.94
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	97.85
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	97.85
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	97.79
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	97.75
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	97.72
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	97.71
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	97.65
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	97.61
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	97.6
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	97.59
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	97.55
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	97.53
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	97.49
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	97.48
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	97.48
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	97.46
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	97.36
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	97.31
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	97.29
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	97.23
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	97.21
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	97.2
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	97.19
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	97.13
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	97.1
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.09
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	97.08
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	97.03
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	97.02
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	96.94
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	96.9
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	96.76
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	96.67
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	96.62
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	96.57
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	96.48
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	96.45
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	96.23
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	96.23
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	96.22
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	96.15
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	96.11
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	96.1
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	96.07
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	95.95
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	95.94
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	95.87
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	95.84
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	95.82
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	95.8
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	95.64
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	95.63
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	95.55
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	95.54
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	95.36
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	95.32
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	95.31
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	95.3
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	95.14
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	95.08
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	94.97
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	94.93
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	94.93
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	94.81
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	94.77
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	94.67
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	94.65
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	94.57
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	94.57
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	94.55
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	94.54
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	94.53
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	94.53
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	94.46
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	94.42
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	94.36
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	94.35
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	94.28
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	94.24
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	94.15
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	94.15
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	94.13
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	94.11
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	94.03
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	93.99
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	93.95
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	93.93
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	93.82
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	93.82
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	93.76
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	93.7
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	93.68
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	93.68
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	93.58
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	93.3
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	93.2
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	93.16
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	93.01
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	92.96
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	92.89
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	92.82
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	92.81
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	92.75
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	92.73
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	92.67
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	92.65
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	92.58
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	92.57
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	92.49
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	92.48
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	92.43
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	92.41
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	92.36
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	92.35
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	92.26
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	92.24
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	92.2
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	92.19
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	92.05
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	92.03
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	92.02
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	92.02
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	92.01
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	92.0
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	91.98
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	91.95
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	91.94
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	91.93
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	91.87
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	91.86
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	91.84
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	91.83
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	91.81
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	91.77
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	91.75
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	91.68
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	91.67
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	91.67
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	91.63
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	91.63
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	91.55
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	91.52
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	91.49
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	91.47
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	91.36
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	91.34
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	91.34
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	91.32
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	91.27
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	91.26
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	91.17
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	91.16
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	91.11
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	91.09
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	91.08
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	91.05
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	91.04
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	90.97
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	90.94
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	90.93
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	90.88
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	90.81
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	90.79
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	90.79
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	90.75
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	90.75
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	90.73
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	90.64
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	90.63
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	90.56
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	90.44
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	90.4
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	90.4
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	90.37
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	90.36
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	90.34
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	90.31
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	90.31
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	90.24
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	90.09
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	89.99
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	89.99
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	89.84
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	89.68
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	89.57
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	89.54
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	89.53
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	89.52
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	89.47
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	89.34
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	88.96
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	88.84
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	88.84
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	88.71
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	88.68
d1yova1	529	Amyloid beta precursor protein-binding protein 1,	88.65
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	88.64
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	88.54
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	88.49
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	87.99
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	87.87
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	87.28
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	87.21
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	86.99
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	86.82
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	86.75
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	86.21
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	85.5
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	85.44
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	85.33
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	85.32
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	85.18
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	85.09
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	85.07
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	85.03
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	84.99
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	84.93
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	84.89
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	84.5
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	84.43
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	84.37
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	84.11
d1uh5a_	329	Enoyl-ACP reductase {Malaria parasite (Plasmodium	83.79
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	83.75
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	83.71
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	83.62
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	83.57
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	83.35
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	83.13
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	83.06
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	82.59
d1jtva_	285	Human estrogenic 17beta-hydroxysteroid dehydrogena	82.55
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	82.39
d1mxha_	266	Dihydropteridin reductase (pteridine reductase) {T	82.01
d1kewa_	361	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	81.42
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	81.4
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	80.28

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.94  E-value=3.4e-26  Score=166.37  Aligned_cols=145  Identities=68%  Similarity=1.093  Sum_probs=125.8

Q ss_pred             CCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCCcCCCC
Q psy16200         31 GLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAV  110 (183)
Q Consensus        31 g~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~~~~~~  110 (183)
                      |+...+|+|++.+||...+...+.++|..+.  .++..++||+|||||++|+|+|.++.++|+++|++++|++...+++.
T Consensus         9 g~~~~~G~~~a~dfL~~~~~~~~~~~~~~~~--~~p~~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~~~~~~a~   86 (153)
T d1gtea3           9 GLTQDQGFYTSKDFLPLVAKSSKAGMCACHS--PLPSIRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFVNIRAV   86 (153)
T ss_dssp             TCCTTTTEEEHHHHHHHHHHHHCBTTBSCCC--CCCCCCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCGGGCCSC
T ss_pred             CCcccCCEEEHHHHHHHHHhccccCCCcccC--ccccCCCEEEEECCChhHHHHHHHHHHcCCcceeEEEeCChhhhccc
Confidence            5556679999999998877766667775433  45667788999999999999999999999999999999988778888


Q ss_pred             HHHHHHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccc
Q psy16200        111 PEEVQLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGS  177 (183)
Q Consensus       111 ~~~~~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~  177 (183)
                      ..++..+..+++.++++..+.++..+++++.++++.+++++++|++...+|++++|+||.||+|+|.
T Consensus        87 ~~~~~~a~~~~~~~~~~~~~~ei~~~~~~~~~v~~~~~e~d~~G~~~~~~g~e~~i~aD~V~~AiG~  153 (153)
T d1gtea3          87 PEEVELAKEEKCEFLPFLSPRKVIVKGGRIVAVQFVRTEQDETGKWNEDEDQIVHLKADVVISAFGS  153 (153)
T ss_dssp             HHHHHHHHHTTCEEECSEEEEEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEECSEEEECSCE
T ss_pred             hhheeecccccceeEeccccEEEEecCCceEEEEEEEeeECCCCCEecCCCCEEEEECCEEEECcCc
Confidence            8888888999999999999999987778888888888888889998878899999999999999993

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.88  E-value=2.9e-22  Score=153.94  Aligned_cols=146  Identities=21%  Similarity=0.274  Sum_probs=111.9

Q ss_pred             cccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHHHHH-------------
Q psy16200         24 NVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSALR-------------   90 (183)
Q Consensus        24 ~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~l~~-------------   90 (183)
                      |.|+|| | ++++|||++.+|+.+++......     +. .+...+++|+|||||++|+|||+.|.+             
T Consensus         2 R~L~IP-G-edl~gV~~A~dfl~~~N~~p~~~-----~~-~~~~~gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~   73 (225)
T d1cjca1           2 QALDIP-G-EELPGVFSARAFVGWYNGLPENR-----EL-APDLSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEA   73 (225)
T ss_dssp             CCCCCT-T-TTSTTEEEHHHHHHHHTTCGGGT-----TC-CCCTTSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHH
T ss_pred             CCCCCC-C-CCCCCcEeHHHHHHHHhCCcccc-----cc-CccccCceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHH
Confidence            679999 5 89999999999999886421100     00 112235679999999999999999998             


Q ss_pred             -------cCCceEEEEEeecCCcCCCCHHHHHHHH---------------------------------------------
Q psy16200         91 -------CGANKVLVVFRKGCTNIRAVPEEVQLAW---------------------------------------------  118 (183)
Q Consensus        91 -------~G~~~V~lv~r~~~~~~~~~~~~~~~~~---------------------------------------------  118 (183)
                             .|+++|+++.||+..+|+....|+..+.                                             
T Consensus        74 ~l~~l~~~g~~~V~iv~RRg~~~~~ft~~Elre~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (225)
T d1cjca1          74 ALGALRQSRVKTVWIVGRRGPLQVAFTIKELREMIQLPGTRPMLDPADFLGLQDRIKEAARPRKRLMELLLRTATEKPGV  153 (225)
T ss_dssp             HHHHHHTCCCCEEEEECSSCGGGCCCCHHHHHHHHTCTTEEEECCGGGGTTHHHHTTTSCHHHHHHHHHHHHHHHSCCCH
T ss_pred             HHHHHhccCCCeEEEEEEcChHhCCCCchhhhcccccCCCcceechhhhccchhhhhhhhhHHHHHHHHHHHHHHhcccc
Confidence                   5899999999999888888776653211                                             


Q ss_pred             ---------HcCcEEEeCCcceEEEccC--CcEEEEEEEEeeecCCCCe--ecCCCceEEEECCEEEEcccc
Q psy16200        119 ---------EEKCEFLPFMSPVQVDVKD--NKIAGMQFNRTEQNEKGEW--VEDEEQRIKLKANYIISAFGS  177 (183)
Q Consensus       119 ---------~~gv~~~~~~~~~~i~~~~--~~v~~v~~~~~~~~~~~~~--~~~~g~~~~i~~D~Vi~a~G~  177 (183)
                               .+++.|++...+.++.+++  ++++++++.++++++++..  ...+|+..+++||+||.|+||
T Consensus       154 ~~~~~~~~~~~~i~~~f~~~p~~i~~~~~g~~v~~v~~~~~~~~~~~~~~~~~~tg~~~~ipadlVi~AiGf  225 (225)
T d1cjca1         154 EEAARRASASRAWGLRFFRSPQQVLPSPDGRRAAGIRLAVTRLEGIGEATRAVPTGDVEDLPCGLVLSSIGY  225 (225)
T ss_dssp             HHHHHHHTCSEEEEEECSEEEEEEEECTTSSSEEEEEEEEEEEESSGGGCEEEEEEEEEEEECSEEEECCCE
T ss_pred             cccccccccccceEEEeecccccccccCCCCeEEEEEEEEeEECCCCCCCcccCCCcEEEEECCEEEECCCC
Confidence                     2458899999999998743  4799999988877554222  234688899999999999997

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.86  E-value=1.9e-21  Score=148.46  Aligned_cols=145  Identities=21%  Similarity=0.311  Sum_probs=106.5

Q ss_pred             cccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHHHH--------------
Q psy16200         24 NVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSAL--------------   89 (183)
Q Consensus        24 ~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~l~--------------   89 (183)
                      |+|+|| | ++++|||++.+|+.+++.....      ....+...+++|+|||+|++|+|||+.|+              
T Consensus         2 R~L~IP-G-edl~gV~~A~dfl~~~N~~p~~------~~~~~~~~gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~   73 (216)
T d1lqta1           2 RMLNIP-G-EDLPGSIAAVDFVGWYNAHPHF------EQVSPDLSGARAVVIGNGNVALDVARILLTDPDVLARTDIADH   73 (216)
T ss_dssp             CCCCCT-T-TTSTTEEEHHHHHHHHTTCGGG------TTCCCCCCSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHH
T ss_pred             CCCCCC-C-CCCCCcEeHHHHHHHHhCCccc------cccCccccCceEEEECCCchhHhhhhhhccCHhhhccCCCcHH
Confidence            679999 5 8999999999999988742110      00011223567999999999999999988              


Q ss_pred             ------HcCCceEEEEEeecCCcCCCCHHHHHHHHH--------------------------------------------
Q psy16200         90 ------RCGANKVLVVFRKGCTNIRAVPEEVQLAWE--------------------------------------------  119 (183)
Q Consensus        90 ------~~G~~~V~lv~r~~~~~~~~~~~~~~~~~~--------------------------------------------  119 (183)
                            +.|+++|+++.||+..+++....++..+.+                                            
T Consensus        74 ~l~~l~r~~~~~V~iv~RRg~~~~~ft~~Elre~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~  153 (216)
T d1lqta1          74 ALESLRPRGIQEVVIVGRRGPLQAAFTTLELRELADLDGVDVVIDPAELDGITDEDAAAVGKVCKQNIKVLRGYADREPR  153 (216)
T ss_dssp             HHHHHTTCCCCEEEEECSSCGGGCCCCHHHHHHGGGCTTEEEECCGGGGTTCCHHHHHHHCHHHHHHHHHHHHHHTCC-C
T ss_pred             HHHHHhhcCCceEEEEEECChHhCCCChhhhhhhcccCCCCccCCHHHccchhhhhhhhhccchhHHHHHHHHhhhhccc
Confidence                  689999999999998778776554422110                                            


Q ss_pred             ---cCcEEEeCCcceEEEccCCcEEEEEEEEeee--cCCCCeec-CCCceEEEECCEEEEcccc
Q psy16200        120 ---EKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQ--NEKGEWVE-DEEQRIKLKANYIISAFGS  177 (183)
Q Consensus       120 ---~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~--~~~~~~~~-~~g~~~~i~~D~Vi~a~G~  177 (183)
                         ..+.|++...+..+.+ +++++++++.++++  ++++++.. .+|+..+|+||+||.|+||
T Consensus       154 ~~~~~~~~~~~~~~~~~~~-~~~v~~l~~~~~~~~~d~~g~~~~~~~g~~~~i~~dlvi~AIGy  216 (216)
T d1lqta1         154 PGHRRMVFRFLTSPIEIKG-KRKVERIVLGRNELVSDGSGRVAAKDTGEREELPAQLVVRSVGY  216 (216)
T ss_dssp             TTSEEEEEECSEEEEEEEC-SSSCCEEEEEEEEEEECSSSSEEEEEEEEEEEEECSEEEECSCE
T ss_pred             cCcceeeeeeccccccccc-cCceeEEEEEEEEEeeCCCCCeeeecCCcEEEEECCEEEECCCC
Confidence               1245666666666653 67888899887776  45566543 3578889999999999997

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.82  E-value=2.4e-19  Score=124.54  Aligned_cols=110  Identities=23%  Similarity=0.254  Sum_probs=88.0

Q ss_pred             cCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCCcCCCCHHH
Q psy16200         34 EEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEE  113 (183)
Q Consensus        34 ~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~~~~~~~~~  113 (183)
                      +.+.|+++.++|.                  ....|++++|||||++|+|+|.+|+++|+ +|++++++++. +|..+++
T Consensus         5 d~~~v~~s~~~l~------------------l~~~p~~i~IiG~G~ig~E~A~~l~~~G~-~Vtiv~~~~~l-l~~~d~e   64 (119)
T d3lada2           5 DQDVIVDSTGALD------------------FQNVPGKLGVIGAGVIGLELGSVWARLGA-EVTVLEAMDKF-LPAVDEQ   64 (119)
T ss_dssp             CSSSEEEHHHHTS------------------CSSCCSEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSSSS-STTSCHH
T ss_pred             CCCEEEchhHhhC------------------cccCCCeEEEECCChHHHHHHHHHHHcCC-ceEEEEeeccc-CCcccch
Confidence            3467999888873                  24577999999999999999999999997 79999999875 6666555


Q ss_pred             HH-----HHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEccc
Q psy16200        114 VQ-----LAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFG  176 (183)
Q Consensus       114 ~~-----~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G  176 (183)
                      +.     .+.++||+|++++.++++..+++.++ +++.            ..+..++++||.|++|+|
T Consensus        65 i~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~v~-v~~~------------~~~~~~~~~~D~vlvAvG  119 (119)
T d3lada2          65 VAKEAQKILTKQGLKILLGARVTGTEVKNKQVT-VKFV------------DAEGEKSQAFDKLIVAVG  119 (119)
T ss_dssp             HHHHHHHHHHHTTEEEEETCEEEEEEECSSCEE-EEEE------------SSSEEEEEEESEEEECSC
T ss_pred             hHHHHHHHHHhcCceeecCcEEEEEEEeCCEEE-EEEE------------ECCCCEEEECCEEEEeeC
Confidence            42     45688999999999999987666655 4443            234567899999999998

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.80  E-value=1.5e-19  Score=126.61  Aligned_cols=119  Identities=15%  Similarity=0.178  Sum_probs=91.0

Q ss_pred             CcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         23 ANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        23 p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      |+.|.||    +.++++++.+++.                  ....+++++|||||++|+|+|.+++++|. +||+++++
T Consensus         2 ~~lP~ip----~~~~i~ts~~~l~------------------l~~~p~~vvIiGgG~IG~E~A~~~~~~G~-~Vtive~~   58 (125)
T d1ojta2           2 TKLPFIP----EDPRIIDSSGALA------------------LKEVPGKLLIIGGGIIGLEMGTVYSTLGS-RLDVVEMM   58 (125)
T ss_dssp             CCCSSCC----CCTTEECHHHHTT------------------CCCCCSEEEEESCSHHHHHHHHHHHHHTC-EEEEECSS
T ss_pred             CCCCCCC----CCCcEEcHHHhhC------------------ccccCCeEEEECCCHHHHHHHHHhhcCCC-EEEEEEee
Confidence            3444555    3467899888774                  24567899999999999999999999997 79999998


Q ss_pred             cCCcCCCCHHHHH-----HHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccc
Q psy16200        103 GCTNIRAVPEEVQ-----LAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGS  177 (183)
Q Consensus       103 ~~~~~~~~~~~~~-----~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~  177 (183)
                      +.. ++..+.++.     .+.++||.+++++.+.++..+++.+. +++.           ..+++.++++||.|++|+|+
T Consensus        59 ~~i-l~~~d~~~~~~l~~~l~~~gv~~~~~~~v~~v~~~~~g~~-v~~~-----------~~~g~~~~i~~D~vl~A~GR  125 (125)
T d1ojta2          59 DGL-MQGADRDLVKVWQKQNEYRFDNIMVNTKTVAVEPKEDGVY-VTFE-----------GANAPKEPQRYDAVLVAAGR  125 (125)
T ss_dssp             SSS-STTSCHHHHHHHHHHHGGGEEEEECSCEEEEEEEETTEEE-EEEE-----------SSSCCSSCEEESCEEECCCE
T ss_pred             ccc-cccchhhHHHHHHHHHHHcCcccccCcEEEEEEEcCCcEE-EEEE-----------eCCCCeEEEEcCEEEEecCC
Confidence            765 676665543     35678999999999999987555553 4442           13344568999999999996

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=99.78  E-value=9.9e-19  Score=122.58  Aligned_cols=122  Identities=13%  Similarity=0.173  Sum_probs=93.4

Q ss_pred             cccCCCCCCccC--CCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHHHHHcCCceEEEEEe
Q psy16200         24 NVIPIFQGLTEE--MGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFR  101 (183)
Q Consensus        24 ~~l~i~gg~~~~--~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r  101 (183)
                      |+|++| |..++  .||++                |..|++  +..-+++|+|||||++|+|.|.+|++. +++|+|++|
T Consensus         2 R~L~ip-ge~~~~gkGV~y----------------ca~cD~--~~~~gk~V~VvGgG~sA~~~A~~L~~~-a~~V~li~r   61 (126)
T d1fl2a2           2 RNMNVP-GEDQYRTKGVTY----------------CPHCDG--PLFKGKRVAVIGGGNSGVEAAIDLAGI-VEHVTLLEF   61 (126)
T ss_dssp             CCCCCT-TTTTTBTTTEES----------------CHHHHG--GGGBTCEEEEECCSHHHHHHHHHHHTT-BSEEEEECS
T ss_pred             CcCCCC-CHHHhcCCCEEE----------------EEecCh--hhcCCceEEEEeCCHHHHHHHHhhhcc-CCceEEEec
Confidence            678999 54444  45654                333332  122345699999999999999999999 578999999


Q ss_pred             ecCCcCCCCHHHHHHHHH-cCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccc
Q psy16200        102 KGCTNIRAVPEEVQLAWE-EKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGS  177 (183)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~-~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~  177 (183)
                      ++.  +.+.+..++++.+ .+|++++++.+.++.++++.++++++.+.          .+|+.+++++|.|++++|.
T Consensus        62 ~~~--~~~~~~~~~~~~~~~~I~v~~~~~v~~i~G~~~~v~~v~l~~~----------~tge~~~l~vdgvFv~IGl  126 (126)
T d1fl2a2          62 APE--MKADQVLQDKLRSLKNVDIILNAQTTEVKGDGSKVVGLEYRDR----------VSGDIHNIELAGIFVQIGL  126 (126)
T ss_dssp             SSS--CCSCHHHHHHHHTCTTEEEESSEEEEEEEESSSSEEEEEEEET----------TTCCEEEEECSEEEECSCE
T ss_pred             ccc--cccccccccccccccceeEEcCcceEEEEccccceeeEEEEEC----------CCCCEEEEECCEEEEEeCC
Confidence            864  5666666666655 56999999999999987678999988642          4678899999999999983

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.78  E-value=1.5e-18  Score=121.06  Aligned_cols=111  Identities=17%  Similarity=0.222  Sum_probs=86.1

Q ss_pred             cCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCCcCCCCHHH
Q psy16200         34 EEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEE  113 (183)
Q Consensus        34 ~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~~~~~~~~~  113 (183)
                      +..+++++.+++.                  ....|++++|||||++|+|+|.+|+++|+ +||+++|+++. ++..+.+
T Consensus         8 d~~~v~ts~~~l~------------------l~~~p~~~viiG~G~iglE~A~~~~~~G~-~Vtvi~~~~~~-l~~~d~~   67 (123)
T d1dxla2           8 DEKKIVSSTGALA------------------LSEIPKKLVVIGAGYIGLEMGSVWGRIGS-EVTVVEFASEI-VPTMDAE   67 (123)
T ss_dssp             CSSSEECHHHHTT------------------CSSCCSEEEESCCSHHHHHHHHHHHHHTC-EEEEECSSSSS-STTSCHH
T ss_pred             CCCeEEeHHHhhC------------------ccccCCeEEEEccchHHHHHHHHHHhcCC-eEEEEEEcccc-Cchhhhc
Confidence            3467898887763                  24567999999999999999999999997 79999998875 5665444


Q ss_pred             H-----HHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcc
Q psy16200        114 V-----QLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAF  175 (183)
Q Consensus       114 ~-----~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~  175 (183)
                      +     ..++++||+|++++.+.++..+++.++ +++..          ..+|++++++||+|++|.
T Consensus        68 ~~~~l~~~l~~~GI~i~~~~~v~~i~~~~~~~~-v~~~~----------~~~g~~~~i~~D~vLvAA  123 (123)
T d1dxla2          68 IRKQFQRSLEKQGMKFKLKTKVVGVDTSGDGVK-LTVEP----------SAGGEQTIIEADVVLVSA  123 (123)
T ss_dssp             HHHHHHHHHHHSSCCEECSEEEEEEECSSSSEE-EEEEE----------SSSCCCEEEEESEEECCC
T ss_pred             chhhhhhhhhcccceEEcCCceEEEEEccCeEE-EEEEE----------CCCCeEEEEEcCEEEEcC
Confidence            3     345789999999999999987555544 44432          135567789999999984

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.78  E-value=4.6e-18  Score=118.46  Aligned_cols=111  Identities=17%  Similarity=0.213  Sum_probs=85.1

Q ss_pred             cCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCCcCCCCHHH
Q psy16200         34 EEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEE  113 (183)
Q Consensus        34 ~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~~~~~~~~~  113 (183)
                      +..+++++.+++.                  ...++++++|||||++|+|+|.+|+++|+ +||+++|+++. +|..+.+
T Consensus         6 d~~~v~ts~~~~~------------------l~~~p~~~vIiG~G~ig~E~A~~l~~lG~-~Vtii~~~~~~-l~~~d~e   65 (122)
T d1v59a2           6 DEEKIVSSTGALS------------------LKEIPKRLTIIGGGIIGLEMGSVYSRLGS-KVTVVEFQPQI-GASMDGE   65 (122)
T ss_dssp             CSSSEECHHHHTT------------------CSSCCSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSSS-SSSSCHH
T ss_pred             CCCEEEehHHhhC------------------cccCCCeEEEECCCchHHHHHHHHHhhCc-ceeEEEecccc-chhhhhh
Confidence            3467888887764                  23567899999999999999999999997 79999999875 6766655


Q ss_pred             HH-----HHHHcCcEEEeCCcceEEEcc-CCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEc
Q psy16200        114 VQ-----LAWEEKCEFLPFMSPVQVDVK-DNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISA  174 (183)
Q Consensus       114 ~~-----~~~~~gv~~~~~~~~~~i~~~-~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a  174 (183)
                      +.     .++++||++++++.+.++... ++....+++..          ..+++.++++||.|++|
T Consensus        66 i~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~~~~~~----------~~~~~~~~ie~D~vlvA  122 (122)
T d1v59a2          66 VAKATQKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVED----------TKTNKQENLEAEVLLVA  122 (122)
T ss_dssp             HHHHHHHHHHHTTCEEECSEEEEEEEEETTTTEEEEEEEE----------TTTTEEEEEEESEEEEC
T ss_pred             hHHHHHHHHHhccceEEeCCEEEEEEEeCCCcEEEEEEEe----------CCCCCeEEEEeCEEEEC
Confidence            43     356789999999999999764 33333244432          13567789999999987

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.78  E-value=4.6e-18  Score=117.44  Aligned_cols=106  Identities=13%  Similarity=0.248  Sum_probs=83.9

Q ss_pred             CCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCCcCCCCHHHHH
Q psy16200         36 MGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQ  115 (183)
Q Consensus        36 ~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~~~~~~~~~~~  115 (183)
                      ..|+++.+++.                  ....|++++|||||++|+|+|..|+++|. +||+++|+++. ++..+.++.
T Consensus         7 ~~i~~s~~~l~------------------~~~~p~~v~IiGgG~ig~E~A~~l~~~G~-~Vtlve~~~~i-l~~~d~~~~   66 (117)
T d1ebda2           7 NRILDSTGALN------------------LGEVPKSLVVIGGGYIGIELGTAYANFGT-KVTILEGAGEI-LSGFEKQMA   66 (117)
T ss_dssp             SSEECHHHHHT------------------CSSCCSEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSSSS-STTSCHHHH
T ss_pred             CCEEChhHhhC------------------hhhcCCeEEEECCCccceeeeeeeccccc-EEEEEEeccee-cccccchhH
Confidence            46888888774                  24567899999999999999999999997 79999999875 666655442


Q ss_pred             -----HHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEc
Q psy16200        116 -----LAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISA  174 (183)
Q Consensus       116 -----~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a  174 (183)
                           .++++||++++++.+.++...++.++ +.+.            .+|+.++++||.|+++
T Consensus        67 ~~l~~~l~~~GI~i~~~~~v~~i~~~~~~~~-v~~~------------~~g~~~~i~~D~Vlvs  117 (117)
T d1ebda2          67 AIIKKRLKKKGVEVVTNALAKGAEEREDGVT-VTYE------------ANGETKTIDADYVLVT  117 (117)
T ss_dssp             HHHHHHHHHTTCEEEESEEEEEEEEETTEEE-EEEE------------ETTEEEEEEESEEEEC
T ss_pred             HHHHHHHHhcCCEEEcCCEEEEEEEcCCEEE-EEEE------------eCCCEEEEEeEEEEEC
Confidence                 45778999999999999986555544 4442            3566789999999985

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=99.76  E-value=1.6e-17  Score=115.08  Aligned_cols=114  Identities=12%  Similarity=0.226  Sum_probs=87.1

Q ss_pred             ccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCCcCCCCHH
Q psy16200         33 TEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPE  112 (183)
Q Consensus        33 ~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~~~~~~~~  112 (183)
                      .+.+||++...++....                ...+++|+|||||++|+|+|..|+++|. +|++++|++.. ++..++
T Consensus         2 ~~~~gv~~~~~~~~~l~----------------~~~~~~vvVvGgG~ig~E~A~~l~~~g~-~vt~i~~~~~~-l~~~d~   63 (121)
T d1mo9a2           2 VNAKGVFDHATLVEELD----------------YEPGSTVVVVGGSKTAVEYGCFFNATGR-RTVMLVRTEPL-KLIKDN   63 (121)
T ss_dssp             TTSBTEEEHHHHHHHCC----------------SCCCSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCTT-TTCCSH
T ss_pred             CCCCCEEeHHHHHHHHh----------------hCCCCEEEEECCCHHHHHHHHHHHhcch-hheEeeccchh-hccccc
Confidence            46789998888765421                2345789999999999999999999997 79999998764 565554


Q ss_pred             HH-----HHHHHcCcEEEeCCcceEEEcc-CCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEccc
Q psy16200        113 EV-----QLAWEEKCEFLPFMSPVQVDVK-DNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFG  176 (183)
Q Consensus       113 ~~-----~~~~~~gv~~~~~~~~~~i~~~-~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G  176 (183)
                      ++     +.++++||++++++.+.++..+ ++.+..+...            ..+..++++||+||+|+|
T Consensus        64 ~~~~~~~~~l~~~gI~v~~~~~v~~i~~~~~~~~~~~~~~------------~~~~~~~i~~D~Vi~a~G  121 (121)
T d1mo9a2          64 ETRAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAM------------TPNGEMRIETDFVFLGLG  121 (121)
T ss_dssp             HHHHHHHHHHHHTTCEEESSCEEEEEEECTTSBEEEEEEE------------ETTEEEEEECSCEEECCC
T ss_pred             chhhhhhhhhhccccEEEcCCEEEEEEecCCceEEEEEEE------------eCCCCEEEEcCEEEEEEC
Confidence            43     2356789999999999999864 3555444332            245667899999999998

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.75  E-value=1.7e-17  Score=114.55  Aligned_cols=110  Identities=19%  Similarity=0.208  Sum_probs=83.6

Q ss_pred             CCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCCc
Q psy16200         27 PIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTN  106 (183)
Q Consensus        27 ~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~~  106 (183)
                      +|| | .+  .++++.+++..                  ...++||+|||||++|+|+|..|+++|. +||+++|+++. 
T Consensus         1 diP-G-~e--~~~t~~~~~~l------------------~~~p~~vvIiGgG~ig~E~A~~l~~~G~-~Vtlve~~~~~-   56 (116)
T d1gesa2           1 DIP-G-VE--YGIDSDGFFAL------------------PALPERVAVVGAGYIGVELGGVINGLGA-KTHLFEMFDAP-   56 (116)
T ss_dssp             CST-T-GG--GSBCHHHHHHC------------------SSCCSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSSS-
T ss_pred             CcC-C-cc--ccCCHHHHhCh------------------hhCCCEEEEECCChhhHHHHHHhhcccc-EEEEEeecchh-
Confidence            367 5 33  35677777742                  3567899999999999999999999997 79999998865 


Q ss_pred             CCCCHHHH-----HHHHHcCcEEEeCCcceEEEccC-CcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEccc
Q psy16200        107 IRAVPEEV-----QLAWEEKCEFLPFMSPVQVDVKD-NKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFG  176 (183)
Q Consensus       107 ~~~~~~~~-----~~~~~~gv~~~~~~~~~~i~~~~-~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G  176 (183)
                      +|..++++     +.++++||++++++.+.++..++ +.++ +++             .+|+  ++++|.||+|+|
T Consensus        57 l~~~d~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~~~~~-v~~-------------~~g~--~~~~D~vi~a~G  116 (116)
T d1gesa2          57 LPSFDPMISETLVEVMNAEGPQLHTNAIPKAVVKNTDGSLT-LEL-------------EDGR--SETVDCLIWAIG  116 (116)
T ss_dssp             STTSCHHHHHHHHHHHHHHSCEEECSCCEEEEEECTTSCEE-EEE-------------TTSC--EEEESEEEECSC
T ss_pred             hhhcchhhHHHHHHHHHHCCCEEEeCCEEEEEEEcCCcEEE-EEE-------------CCCC--EEEcCEEEEecC
Confidence            56665443     34578899999999999997643 3443 443             2343  689999999998

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.74  E-value=5e-18  Score=123.15  Aligned_cols=120  Identities=16%  Similarity=0.206  Sum_probs=85.9

Q ss_pred             CcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHHHHHcCCce-------
Q psy16200         23 ANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSALRCGANK-------   95 (183)
Q Consensus        23 p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~l~~~G~~~-------   95 (183)
                      |+.|+|| | .+.++|+++.+||..                 ....++||+|||||++|+|+|..++++|++.       
T Consensus         2 Pr~p~Ip-G-~d~~~V~~a~d~L~~-----------------~~~~gkrVvVIGgG~~g~d~a~~~~r~G~~~~~~~~~~   62 (162)
T d1ps9a2           2 PRTPPID-G-IDHPKVLSYLDVLRD-----------------KAPVGNKVAIIGCGGIGFDTAMYLSQPGESTSQNIAGF   62 (162)
T ss_dssp             ECCCCCB-T-TTSTTEEEHHHHHTS-----------------CCCCCSEEEEECCHHHHHHHHHHHTCCSSCGGGCHHHH
T ss_pred             CCCCCCC-C-CCCCCeEEHHHHhhC-----------------ccccCCceEEEcCchhHHHHHHHHHHcCCccceeHhhh
Confidence            7899999 5 799999999998852                 2456788999999999999999999998742       


Q ss_pred             -----------------------------EEEEEeecCCc---CC-CC-HHHHHHHHHcCcEEEeCCcceEEEccCCcEE
Q psy16200         96 -----------------------------VLVVFRKGCTN---IR-AV-PEEVQLAWEEKCEFLPFMSPVQVDVKDNKIA  141 (183)
Q Consensus        96 -----------------------------V~lv~r~~~~~---~~-~~-~~~~~~~~~~gv~~~~~~~~~~i~~~~~~v~  141 (183)
                                                   ++++.......   +. .. ......+...||.++++..+.++.. ++ +.
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~-~g-v~  140 (162)
T d1ps9a2          63 CNEWGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQRKASKPGQGLGKTTGWIHRTTLLSRGVKMIPGVSYQKIDD-DG-LH  140 (162)
T ss_dssp             HHHTTBCTTCCSGGGBCTTCCCCCCCSSEEEEECSSCSCTTTTSCTTTHHHHHHHHHHTTCEEECSCEEEEEET-TE-EE
T ss_pred             hhhccCCcchhhhcccccccceeccccceEEEEEeccchhccccchhhhHHHHHHHhhCCeEEEeeeEEEEEcC-CC-CE
Confidence                                         23332211110   00 11 1223456788999999999988863 22 21


Q ss_pred             EEEEEEeeecCCCCeecCCCceEEEECCEEEEccccc
Q psy16200        142 GMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGST  178 (183)
Q Consensus       142 ~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~  178 (183)
                         +.            .+|++++++||+||+|+|+.
T Consensus       141 ---~~------------~~g~e~~i~aD~Vv~A~Gqe  162 (162)
T d1ps9a2         141 ---VV------------INGETQVLAVDNVVICAGQE  162 (162)
T ss_dssp             ---EE------------ETTEEEEECCSEEEECCCEE
T ss_pred             ---Ee------------cCCeEEEEECCEEEECCCCC
Confidence               21            36788899999999999973

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=2.9e-17  Score=114.75  Aligned_cols=102  Identities=18%  Similarity=0.214  Sum_probs=75.9

Q ss_pred             CCCcceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCCcCCCCHHHH-----HHHHHcCcEEEeCCcceEEEccCCcE
Q psy16200         66 PILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEV-----QLAWEEKCEFLPFMSPVQVDVKDNKI  140 (183)
Q Consensus        66 ~~~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~~~~~~~~~~-----~~~~~~gv~~~~~~~~~~i~~~~~~v  140 (183)
                      ..++++|+|||||++|+|+|..|+++|. +||+++|+++. ++..+.++     +.++++||++++++.++++..+++.+
T Consensus        19 ~~~pk~vvIvGgG~iG~E~A~~l~~~G~-~Vtlv~~~~~~-l~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~g~   96 (125)
T d3grsa2          19 EELPGRSVIVGAGYIAVEMAGILSALGS-KTSLMIRHDKV-LRSFDSMISTNCTEELENAGVEVLKFSQVKEVKKTLSGL   96 (125)
T ss_dssp             CSCCSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSSS-CTTSCHHHHHHHHHHHHHTTCEEETTEEEEEEEEETTEE
T ss_pred             hhcCCEEEEEcCCccHHHHHHHHhcCCc-EEEEEeecccc-ccchhhHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeE
Confidence            3467899999999999999999999997 79999998865 56654443     24578899999999999998654443


Q ss_pred             EEEEEEEeeecCCCCeecCCCceEEEECCEEEEccc
Q psy16200        141 AGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFG  176 (183)
Q Consensus       141 ~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G  176 (183)
                      . +++..   ...|+   .+.....++||.|++|+|
T Consensus        97 ~-v~~~~---~~~g~---~~~~~~~~~~D~vl~a~G  125 (125)
T d3grsa2          97 E-VSMVT---AVPGR---LPVMTMIPDVDCLLWAIG  125 (125)
T ss_dssp             E-EEEEE---CCTTS---CCEEEEEEEESEEEECSC
T ss_pred             E-EEEEE---ccCCc---CcCccccccCCEEEEEeC
Confidence            3 22221   12222   233445778999999998

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.73  E-value=3.4e-17  Score=113.16  Aligned_cols=110  Identities=16%  Similarity=0.269  Sum_probs=81.7

Q ss_pred             cCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCC
Q psy16200         26 IPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCT  105 (183)
Q Consensus        26 l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~  105 (183)
                      |+|| |+ +  .++++.+++.                  ... ++||+|||||++|+|+|..|+++|. +||+++|+++.
T Consensus         2 P~Ip-G~-e--~~~ts~~~~~------------------l~~-p~~v~IiGgG~iG~E~A~~l~~~g~-~Vtlv~~~~~i   57 (117)
T d1onfa2           2 PPVK-GI-E--NTISSDEFFN------------------IKE-SKKIGIVGSGYIAVELINVIKRLGI-DSYIFARGNRI   57 (117)
T ss_dssp             CSCT-TG-G--GCEEHHHHTT------------------CCC-CSEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSSSS
T ss_pred             cccC-CH-h--HcCchhHHhc------------------cCC-CCEEEEECCchHHHHHHHHHHhccc-cceeeehhccc
Confidence            6789 53 3  4678777663                  123 5889999999999999999999997 79999998875


Q ss_pred             cCCCCHHHHH-----HHHHcCcEEEeCCcceEEEcc-CCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcc
Q psy16200        106 NIRAVPEEVQ-----LAWEEKCEFLPFMSPVQVDVK-DNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAF  175 (183)
Q Consensus       106 ~~~~~~~~~~-----~~~~~gv~~~~~~~~~~i~~~-~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~  175 (183)
                       ++..++++.     .+.++||++++++.+.++... ++.++ +++             .+|+.. ..+|.||+|+
T Consensus        58 -l~~~d~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~~-v~~-------------~~G~~~-~~~D~Vi~AI  117 (117)
T d1onfa2          58 -LRKFDESVINVLENDMKKNNINIVTFADVVEIKKVSDKNLS-IHL-------------SDGRIY-EHFDHVIYCV  117 (117)
T ss_dssp             -CTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEESSTTCEE-EEE-------------TTSCEE-EEESEEEECC
T ss_pred             -cccccHHHHHHHHHHHHhCCCEEEECCEEEEEEEcCCCeEE-EEE-------------CCCCEE-EeCCEEEEeC
Confidence             566654442     357789999999999999753 44443 433             344432 3689999985

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.71  E-value=6.1e-17  Score=113.81  Aligned_cols=106  Identities=23%  Similarity=0.329  Sum_probs=82.5

Q ss_pred             ccCCCCCCCCCCCc-ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCCcCCCCHHHHHHHHH-cCcEEEeCCcceEE
Q psy16200         56 LCGGCKKESLPILK-GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWE-EKCEFLPFMSPVQV  133 (183)
Q Consensus        56 ~~~~~~~~~~~~~~-~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~~~~~~~~~~~~~~~-~gv~~~~~~~~~~i  133 (183)
                      ||+.||+. .+.+. ++|+|||||+.|+|.|.+|++. +++|++++|++.  +.+.+..++++.+ .+|++++++.+.++
T Consensus        21 yca~CDg~-a~~frgk~V~VvGgGdsA~e~A~~L~~~-a~~V~li~r~~~--~ra~~~~~~~l~~~~nI~v~~~~~v~~i   96 (130)
T d1vdca2          21 ACAVCDGA-APIFRNKPLAVIGGGDSAMEEANFLTKY-GSKVYIIHRRDA--FRASKIMQQRALSNPKIDVIWNSSVVEA   96 (130)
T ss_dssp             SCHHHHTT-SGGGTTSEEEEECCSHHHHHHHHHHTTT-SSEEEEECSSSS--CCSCHHHHHHHHTCTTEEEECSEEEEEE
T ss_pred             EEEEecCc-hHHhCCCEEEEEcCchHHHHHHHHHhCC-CCcEEEEEeccc--cccchhhhhccccCCceEEEeccEEEEE
Confidence            56666642 12344 4599999999999999999999 578999999864  5666666666654 45999999999999


Q ss_pred             EccC--CcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcc
Q psy16200        134 DVKD--NKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAF  175 (183)
Q Consensus       134 ~~~~--~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~  175 (183)
                      .+++  +.+.++++.+.          .+++..++++|.|++|+
T Consensus        97 ~Gd~~~~~v~~v~l~~~----------~tge~~~l~~dGvFVaI  130 (130)
T d1vdca2          97 YGDGERDVLGGLKVKNV----------VTGDVSDLKVSGLFFAI  130 (130)
T ss_dssp             EESSSSSSEEEEEEEET----------TTCCEEEEECSEEEECS
T ss_pred             EccCCcccEEEEEEEEC----------CCCCEEEEECCEEEEEC
Confidence            9854  45888887642          46788899999999986

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.70  E-value=1.9e-16  Score=109.19  Aligned_cols=95  Identities=14%  Similarity=0.216  Sum_probs=72.9

Q ss_pred             CCCcceEEEEcCChhHHHHHHHHHHc---CCceEEEEEeecCCcCCCCHHHH-----HHHHHcCcEEEeCCcceEEEccC
Q psy16200         66 PILKGTVIVLGAGDTAFDCATSALRC---GANKVLVVFRKGCTNIRAVPEEV-----QLAWEEKCEFLPFMSPVQVDVKD  137 (183)
Q Consensus        66 ~~~~~~VvViGgG~~g~e~A~~l~~~---G~~~V~lv~r~~~~~~~~~~~~~-----~~~~~~gv~~~~~~~~~~i~~~~  137 (183)
                      ...|++++|||||++|+|+|..|+++   |. +|++++|+++. +|..++++     ..++++||+|++++.+.++..+.
T Consensus        15 ~~~p~~v~IiGgG~ig~E~A~~l~~~~~~g~-~Vtli~~~~~i-l~~~d~~~~~~~~~~l~~~GI~v~~~~~v~~i~~~~   92 (117)
T d1feca2          15 DEAPKRALCVGGGYISIEFAGIFNAYKARGG-QVDLAYRGDMI-LRGFDSELRKQLTEQLRANGINVRTHENPAKVTKNA   92 (117)
T ss_dssp             SSCCSEEEEECSSHHHHHHHHHHHHHSCTTC-EEEEEESSSSS-STTSCHHHHHHHHHHHHHTTEEEEETCCEEEEEECT
T ss_pred             cccCCeEEEECCChHHHHHHHHhHhhccccc-ccceecccccc-cccccchhhHHHHHHHhhCcEEEEcCCEEEEEEECC
Confidence            45678999999999999999988776   65 79999998765 56654443     24578899999999999997543


Q ss_pred             CcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccc
Q psy16200        138 NKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGS  177 (183)
Q Consensus       138 ~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~  177 (183)
                      +.+..+.+             .+|+  +++||.||+|+|+
T Consensus        93 ~g~~~v~~-------------~~g~--~i~~D~Vi~a~GR  117 (117)
T d1feca2          93 DGTRHVVF-------------ESGA--EADYDVVMLAIGR  117 (117)
T ss_dssp             TSCEEEEE-------------TTSC--EEEESEEEECSCE
T ss_pred             CCEEEEEE-------------CCCC--EEEcCEEEEecCC
Confidence            33333443             2343  6899999999996

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.69  E-value=3.9e-16  Score=107.66  Aligned_cols=93  Identities=16%  Similarity=0.287  Sum_probs=71.7

Q ss_pred             CCCcceEEEEcCChhHHHHHHHHHHcCCc--eEEEEEeecCCcCCCCHHHH-----HHHHHcCcEEEeCCcceEEEcc-C
Q psy16200         66 PILKGTVIVLGAGDTAFDCATSALRCGAN--KVLVVFRKGCTNIRAVPEEV-----QLAWEEKCEFLPFMSPVQVDVK-D  137 (183)
Q Consensus        66 ~~~~~~VvViGgG~~g~e~A~~l~~~G~~--~V~lv~r~~~~~~~~~~~~~-----~~~~~~gv~~~~~~~~~~i~~~-~  137 (183)
                      ...+++++|||||++|+|+|..+.++|.+  +||+++|+++. +|..++++     +.++++||++++++.+.++... +
T Consensus        17 ~~~p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~i-L~~~d~~~~~~l~~~l~~~GV~v~~~~~v~~ie~~~~   95 (117)
T d1aoga2          17 PEPPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMI-LRGFDHTLREELTKQLTANGIQILTKENPAKVELNAD   95 (117)
T ss_dssp             SSCCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSS-STTSCHHHHHHHHHHHHHTTCEEEESCCEEEEEECTT
T ss_pred             hhcCCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchh-hcccchHHHHHHHHHHHhcCcEEEcCCEEEEEEEcCC
Confidence            45678999999999999999998887642  69999998875 67665544     2457889999999999999753 4


Q ss_pred             CcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcc
Q psy16200        138 NKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAF  175 (183)
Q Consensus       138 ~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~  175 (183)
                      +.++ +++             .+|+  +++||+||+|+
T Consensus        96 ~~~~-v~~-------------~~G~--~i~~D~Vi~AI  117 (117)
T d1aoga2          96 GSKS-VTF-------------ESGK--KMDFDLVMMAI  117 (117)
T ss_dssp             SCEE-EEE-------------TTSC--EEEESEEEECS
T ss_pred             CeEE-EEE-------------CCCc--EEEeCEEEEeC
Confidence            4443 444             2443  68999999985

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.69  E-value=1.5e-16  Score=109.41  Aligned_cols=93  Identities=16%  Similarity=0.192  Sum_probs=72.5

Q ss_pred             CCCcceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCCcCCCCHHHH-----HHHHHcCcEEEeCCcceEEEccCCcE
Q psy16200         66 PILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEV-----QLAWEEKCEFLPFMSPVQVDVKDNKI  140 (183)
Q Consensus        66 ~~~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~~~~~~~~~~-----~~~~~~gv~~~~~~~~~~i~~~~~~v  140 (183)
                      ...|++++|||||++|+|+|..|+++|. +||+++|.++. +|..++++     +.+.++||++++++.+.++.  ++..
T Consensus        18 ~~~p~~vvIiGgG~~G~E~A~~l~~~g~-~Vtlve~~~~i-l~~~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~--~~~~   93 (115)
T d1lvla2          18 KALPQHLVVVGGGYIGLELGIAYRKLGA-QVSVVEARERI-LPTYDSELTAPVAESLKKLGIALHLGHSVEGYE--NGCL   93 (115)
T ss_dssp             SSCCSEEEEECCSHHHHHHHHHHHHHTC-EEEEECSSSSS-STTSCHHHHHHHHHHHHHHTCEEETTCEEEEEE--TTEE
T ss_pred             ccCCCeEEEECCCHHHHHHHHHHhhccc-ceEEEeeeccc-cccccchhHHHHHHHHHhhcceEEcCcEEEEEc--CCeE
Confidence            4567899999999999999999999997 79999998875 66665443     34578899999999988885  2332


Q ss_pred             EEEEEEEeeecCCCCeecCCCceEEEECCEEEEccc
Q psy16200        141 AGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFG  176 (183)
Q Consensus       141 ~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G  176 (183)
                      .  ..            ...+..++++||.||+|+|
T Consensus        94 ~--~~------------~~~~~~~~i~~D~vi~A~G  115 (115)
T d1lvla2          94 L--AN------------DGKGGQLRLEADRVLVAVG  115 (115)
T ss_dssp             E--EE------------CSSSCCCEECCSCEEECCC
T ss_pred             E--EE------------EcCCCeEEEEcCEEEEecC
Confidence            1  11            1344556899999999998

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=99.67  E-value=4.9e-16  Score=107.85  Aligned_cols=87  Identities=15%  Similarity=0.243  Sum_probs=67.9

Q ss_pred             CcceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCCcCC-CCHHHH-----HHHHHcCcEEEeCCcceEEEccCCcEE
Q psy16200         68 LKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIR-AVPEEV-----QLAWEEKCEFLPFMSPVQVDVKDNKIA  141 (183)
Q Consensus        68 ~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~~~~-~~~~~~-----~~~~~~gv~~~~~~~~~~i~~~~~~v~  141 (183)
                      .+++++|||||++|+|+|..|+++|. +|++++++++. ++ ..++++     +.+.++||+++++..+.++..  +.+ 
T Consensus        29 ~~~~vvIIGgG~iG~E~A~~l~~~g~-~Vtli~~~~~~-l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~~~~--~~v-  103 (121)
T d1d7ya2          29 PQSRLLIVGGGVIGLELAATARTAGV-HVSLVETQPRL-MSRAAPATLADFVARYHAAQGVDLRFERSVTGSVD--GVV-  103 (121)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSSST-TTTTSCHHHHHHHHHHHHTTTCEEEESCCEEEEET--TEE-
T ss_pred             cCCeEEEECcchhHHHHHHHhhcccc-eEEEEeecccc-ccccCCHHHHHHHHHHHHHCCcEEEeCCEEEEEeC--CEE-
Confidence            45789999999999999999999996 79999999875 44 434433     235678999999999988763  333 


Q ss_pred             EEEEEEeeecCCCCeecCCCceEEEECCEEEEccc
Q psy16200        142 GMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFG  176 (183)
Q Consensus       142 ~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G  176 (183)
                        ++             .+|+  +++||.||+|+|
T Consensus       104 --~l-------------~dg~--~i~~D~vi~a~G  121 (121)
T d1d7ya2         104 --LL-------------DDGT--RIAADMVVVGIG  121 (121)
T ss_dssp             --EE-------------TTSC--EEECSEEEECSC
T ss_pred             --EE-------------CCCC--EEECCEEEEeeC
Confidence              23             2343  799999999998

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=99.67  E-value=1.6e-16  Score=111.16  Aligned_cols=96  Identities=18%  Similarity=0.207  Sum_probs=75.3

Q ss_pred             cceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCCcCCCCHHHHHHH----HHcCcEEEeCCcceEEEccCCcEEEEE
Q psy16200         69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLA----WEEKCEFLPFMSPVQVDVKDNKIAGMQ  144 (183)
Q Consensus        69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~~~~~~~~~~~~~----~~~gv~~~~~~~~~~i~~~~~~v~~v~  144 (183)
                      +++|+|||||++|+|.|.+|++.. ++|++++|++.  +.+.+..++++    ...++.+++++.+.++.+++..+++|+
T Consensus        27 ~k~V~VvGgGdsA~e~A~~L~~~a-~~V~li~r~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~i~G~~~~v~~v~  103 (126)
T d1trba2          27 NQKVAVIGGGNTAVEEALYLSNIA-SEVHLIHRRDG--FRAEKILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVR  103 (126)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTTTS-SEEEEECSSSS--CCCCHHHHHHHHHHHHTSSEEEECSCEEEEEEECSSSEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHhhcC-CcEEEEeeccc--ccchhHHHHHHHHhhcccceeEecceEEEEEECCCCceEEEE
Confidence            456999999999999999999985 68999999864  45554444433    346799999999999998666799998


Q ss_pred             EEEeeecCCCCeecCCCceEEEECCEEEEccc
Q psy16200        145 FNRTEQNEKGEWVEDEEQRIKLKANYIISAFG  176 (183)
Q Consensus       145 ~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G  176 (183)
                      +.+.+         ..++.+++++|.|++++|
T Consensus       104 l~~~~---------~~e~~~~l~~dgvFv~iG  126 (126)
T d1trba2         104 LRDTQ---------NSDNIESLDVAGLFVAIG  126 (126)
T ss_dssp             EECCT---------TCCCCEEEECSEEEECSC
T ss_pred             EEECC---------CCceEEEEECCEEEEEeC
Confidence            86321         223447899999999998

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.66  E-value=9.9e-17  Score=111.49  Aligned_cols=115  Identities=18%  Similarity=0.202  Sum_probs=80.3

Q ss_pred             CcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         23 ANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        23 p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      |+.|+|| | .+  ++++..++.......            +....+++++|||||++|+|+|..|+++|. +||+++|+
T Consensus         2 ~r~p~ip-G-~e--~~~t~~~~~d~~~l~------------~~~~~~~~vvIiGgG~iG~E~A~~l~~~g~-~Vtlv~~~   64 (122)
T d1xhca2           2 AREPQIK-G-KE--YLLTLRTIFDADRIK------------ESIENSGEAIIIGGGFIGLELAGNLAEAGY-HVKLIHRG   64 (122)
T ss_dssp             ECCCCSB-T-GG--GEECCCSHHHHHHHH------------HHHHHHSEEEEEECSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             CCCcCCC-C-cc--ceEccCCHHHHHHHH------------HHhhcCCcEEEECCcHHHHHHHHHhhcccc-eEEEEecc
Confidence            7889999 5 43  466554443322110            012234779999999999999999999997 79999998


Q ss_pred             cCCcCCCCHHHH-----HHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccc
Q psy16200        103 GCTNIRAVPEEV-----QLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGS  177 (183)
Q Consensus       103 ~~~~~~~~~~~~-----~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~  177 (183)
                      +.. ++. ++++     +.+.++||++++++.+.++..  +.+    +             .++  ..+++|.||+|+|.
T Consensus        65 ~~l-~~~-d~~~~~~~~~~l~~~GV~~~~~~~v~~~~~--~~v----~-------------~~~--~~i~~D~vi~a~Gv  121 (122)
T d1xhca2          65 AMF-LGL-DEELSNMIKDMLEETGVKFFLNSELLEANE--EGV----L-------------TNS--GFIEGKVKICAIGI  121 (122)
T ss_dssp             SCC-TTC-CHHHHHHHHHHHHHTTEEEECSCCEEEECS--SEE----E-------------ETT--EEEECSCEEEECCE
T ss_pred             ccc-cCC-CHHHHHHHHHHHHHCCcEEEeCCEEEEEeC--CEE----E-------------eCC--CEEECCEEEEEEEe
Confidence            764 443 3332     345788999999999988863  222    1             122  37899999999995

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.66  E-value=9.1e-16  Score=106.59  Aligned_cols=97  Identities=22%  Similarity=0.388  Sum_probs=72.9

Q ss_pred             CCCcceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCCcCCCCHHHH-----HHHHHcCcEEEeCCcceEEEc-cC--
Q psy16200         66 PILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEV-----QLAWEEKCEFLPFMSPVQVDV-KD--  137 (183)
Q Consensus        66 ~~~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~~~~~~~~~~-----~~~~~~gv~~~~~~~~~~i~~-~~--  137 (183)
                      ...|++++|||||++|+|+|..|+++|+ +|++++|+ + .++..++++     ..++++||+|++++.++++.. ++  
T Consensus        17 ~~~P~~vvIIGgG~iG~E~A~~l~~lG~-~Vtii~~~-~-~l~~~D~~~~~~l~~~l~~~Gv~i~~~~~v~~~~~~~~~~   93 (122)
T d1h6va2          17 PYCPGKTLVVGASYVALECAGFLAGIGL-DVTVMVRS-I-LLRGFDQDMANKIGEHMEEHGIKFIRQFVPTKIEQIEAGT   93 (122)
T ss_dssp             SSCCCSEEEECCSHHHHHHHHHHHHTTC-CEEEEESS-S-SSTTSCHHHHHHHHHHHHHTTEEEEESCEEEEEEEEECST
T ss_pred             ccCCCeEEEECCCccHHHHHHHHhhcCC-eEEEEEec-h-hhccCCHHHHHHHHHHHHHCCCEEEECCEEEEEEEecCCC
Confidence            4567899999999999999999999997 69999875 3 367766554     345788999999999998864 22  


Q ss_pred             -CcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEccc
Q psy16200        138 -NKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFG  176 (183)
Q Consensus       138 -~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G  176 (183)
                       +.+. +++..          ..+++...++||.|++|+|
T Consensus        94 ~~~~~-v~~~~----------~~~~~~~~~~~D~vl~AiG  122 (122)
T d1h6va2          94 PGRLK-VTAKS----------TNSEETIEDEFNTVLLAVG  122 (122)
T ss_dssp             TCEEE-EEEEC----------TTSCEEEEEEESEEECCCC
T ss_pred             ccEEE-EEEEE----------CCCCcEEEEECCEEEEEeC
Confidence             2232 33321          1234556779999999998

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.66  E-value=5.8e-16  Score=107.73  Aligned_cols=90  Identities=14%  Similarity=0.158  Sum_probs=68.6

Q ss_pred             CcceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCCcCCCCHHHH-----HHHHHcCcEEEeCCcceEEEccCCcEEE
Q psy16200         68 LKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEV-----QLAWEEKCEFLPFMSPVQVDVKDNKIAG  142 (183)
Q Consensus        68 ~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~~~~~~~~~~-----~~~~~~gv~~~~~~~~~~i~~~~~~v~~  142 (183)
                      .+++|+|||||++|+|+|..|+++|. +||+++++++......++++     +.+.++||++++++.+.++.. +++++.
T Consensus        29 ~~k~vvViGgG~iG~E~A~~l~~~g~-~Vtlie~~~~~l~~~~d~~~~~~~~~~l~~~gv~~~~~~~v~~i~~-~~~~~~  106 (123)
T d1nhpa2          29 EVNNVVVIGSGYIGIEAAEAFAKAGK-KVTVIDILDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEG-DGRVQK  106 (123)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSSSTTTTTCCHHHHHHHHHHHHTTTEEEEESCCEEEEEC-SSBCCE
T ss_pred             CCCEEEEECChHHHHHHHHHhhccce-EEEEEEecCcccccccchhhHHHHHHHhhcCCeEEEeCceEEEEEc-CCCEEE
Confidence            35789999999999999999999997 79999998765223334443     235678999999999999986 345442


Q ss_pred             EEEEEeeecCCCCeecCCCceEEEECCEEEEcc
Q psy16200        143 MQFNRTEQNEKGEWVEDEEQRIKLKANYIISAF  175 (183)
Q Consensus       143 v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~  175 (183)
                      + +             .+|+  +++||.||+|+
T Consensus       107 v-~-------------~dg~--~i~~D~vi~aI  123 (123)
T d1nhpa2         107 V-V-------------TDKN--AYDADLVVVAV  123 (123)
T ss_dssp             E-E-------------ESSC--EEECSEEEECS
T ss_pred             E-E-------------eCCC--EEECCEEEEEC
Confidence            3 2             1333  69999999985

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=99.65  E-value=9.5e-16  Score=108.02  Aligned_cols=92  Identities=15%  Similarity=0.318  Sum_probs=72.3

Q ss_pred             CcceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCCcCC-CCHHHH-----HHHHHcCcEEEeCCcceEEEc--cCCc
Q psy16200         68 LKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIR-AVPEEV-----QLAWEEKCEFLPFMSPVQVDV--KDNK  139 (183)
Q Consensus        68 ~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~~~~-~~~~~~-----~~~~~~gv~~~~~~~~~~i~~--~~~~  139 (183)
                      .+++|+|||||++|+|+|..|++.|. +|++++++++. ++ ..++++     +.+.++||+++++..+.++..  +++.
T Consensus        34 ~~k~v~VIGgG~iG~E~A~~l~~~g~-~Vtvie~~~~~-l~~~~~~~~~~~~~~~~~~~GV~i~~~~~v~~i~~~~~~~~  111 (133)
T d1q1ra2          34 ADNRLVVIGGGYIGLEVAATAIKANM-HVTLLDTAARV-LERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQK  111 (133)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSST-TTTTSCHHHHHHHHHHHHHHTCEEECSCCEEEEEECTTTCC
T ss_pred             cCCEEEEECCchHHHHHHHHHHhhCc-ceeeeeecccc-cccccchhhhhhhhhcccccccEEEeCCeEEEEEEeCCCce
Confidence            45789999999999999999999997 79999998875 44 334333     234788999999999999875  3455


Q ss_pred             EEEEEEEEeeecCCCCeecCCCceEEEECCEEEEccc
Q psy16200        140 IAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFG  176 (183)
Q Consensus       140 v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G  176 (183)
                      ++.+.+             .+|+  +++||.||+|+|
T Consensus       112 v~~v~~-------------~~G~--~i~~D~vi~a~G  133 (133)
T d1q1ra2         112 VTAVLC-------------EDGT--RLPADLVIAGIG  133 (133)
T ss_dssp             EEEEEE-------------TTSC--EEECSEEEECCC
T ss_pred             EEEEEC-------------CCCC--EEECCEEEEeeC
Confidence            655544             2443  699999999998

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=99.65  E-value=7.2e-16  Score=111.09  Aligned_cols=134  Identities=13%  Similarity=0.061  Sum_probs=91.3

Q ss_pred             ccCCCCCccc-CCCCCCccC--CCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEE--cCChhHHHHHHHHHHc
Q psy16200         17 GIGKPNANVI-PIFQGLTEE--MGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVL--GAGDTAFDCATSALRC   91 (183)
Q Consensus        17 ATGa~~p~~l-~i~gg~~~~--~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvVi--GgG~~g~e~A~~l~~~   91 (183)
                      |||+. |..+ ||| | .+.  .+|+++.++|...                 ..++++|+|+  |||++|+|+|.+|+++
T Consensus         4 atG~~-~~~~~pip-G-~~~~~~~v~t~~d~l~~~-----------------~~~~~~vvi~d~ggg~ig~e~A~~la~~   63 (156)
T d1djqa2           4 TDGTN-CLTHDPIP-G-ADASLPDQLTPEQVMDGK-----------------KKIGKRVVILNADTYFMAPSLAEKLATA   63 (156)
T ss_dssp             SSCCC-TTTSSCCT-T-CCTTSTTEECHHHHHHTC-----------------SCCCSEEEEEECCCSSHHHHHHHHHHHT
T ss_pred             CCCCC-CCCCCCCC-C-ccCCCCEEECHHHHhcCc-----------------cccCCceEEEecCCChHHHHHHHHHHHc
Confidence            89985 6554 799 5 444  4688999987631                 2344557776  9999999999999999


Q ss_pred             CCceEEEEEeecCCcCCC----C-HHHHHHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecC-------CCCe-ec
Q psy16200         92 GANKVLVVFRKGCTNIRA----V-PEEVQLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNE-------KGEW-VE  158 (183)
Q Consensus        92 G~~~V~lv~r~~~~~~~~----~-~~~~~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~-------~~~~-~~  158 (183)
                      |+ +||+|++.+.. ++.    . ......+++.||+|++++.+.++..  +.+.   +.....++       .+.. ..
T Consensus        64 G~-~Vtlv~~~~~~-~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~--~~v~---l~~~~~~~~~~v~~~~g~~~~~  136 (156)
T d1djqa2          64 GH-EVTIVSGVHLA-NYMHFTLEYPNMMRRLHELHVEELGDHFCSRIEP--GRME---IYNIWGDGSKRTYRGPGVSPRD  136 (156)
T ss_dssp             TC-EEEEEESSCTT-THHHHTTCHHHHHHHHHHTTCEEEETEEEEEEET--TEEE---EEETTCSCSCCCCCCTTSCSSC
T ss_pred             CC-eEEEEecCCcc-ccccchhHHHHHHHHHhhccceEEeccEEEEecC--cceE---EEeeeccccceeeeeeEEEecc
Confidence            97 79999987643 221    1 1233467889999999999999974  3222   22111101       1111 11


Q ss_pred             CCCceEEEECCEEEEcccc
Q psy16200        159 DEEQRIKLKANYIISAFGS  177 (183)
Q Consensus       159 ~~g~~~~i~~D~Vi~a~G~  177 (183)
                      ...+...++||.+|+++|+
T Consensus       137 ~~~~~~~le~D~vilvtgR  155 (156)
T d1djqa2         137 ANTSHRWIEFDSLVLVTGR  155 (156)
T ss_dssp             CCCCCEEEECSEEEEESCE
T ss_pred             cCCccCcEecceEEEEecC
Confidence            3345678999999999997

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=2e-13  Score=96.29  Aligned_cols=91  Identities=19%  Similarity=0.332  Sum_probs=70.1

Q ss_pred             cceEEEEcCChhHHHHHHHHH----HcCCceEEEEEeecCCcCC-CCHHHH-----HHHHHcCcEEEeCCcceEEEccCC
Q psy16200         69 KGTVIVLGAGDTAFDCATSAL----RCGANKVLVVFRKGCTNIR-AVPEEV-----QLAWEEKCEFLPFMSPVQVDVKDN  138 (183)
Q Consensus        69 ~~~VvViGgG~~g~e~A~~l~----~~G~~~V~lv~r~~~~~~~-~~~~~~-----~~~~~~gv~~~~~~~~~~i~~~~~  138 (183)
                      +++++|||||++|+|+|..|+    ..|. +|+++++++.. ++ ..++++     +.+.++||++++++.+.++..+++
T Consensus        37 ~k~i~IvGgG~~G~E~A~~l~~~~~~~g~-~Vt~i~~~~~~-l~~~~~~~~~~~~~~~l~~~GV~~~~~~~V~~i~~~~~  114 (137)
T d1m6ia2          37 VKSITIIGGGFLGSELACALGRKARALGT-EVIQLFPEKGN-MGKILPEYLSNWTMEKVRREGVKVMPNAIVQSVGVSSG  114 (137)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHTC-EEEEECSSSST-TTTTSCHHHHHHHHHHHHTTTCEEECSCCEEEEEEETT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHHHhcCC-EEEEecccccC-CcccCCHHHHHHHHHHHHhCCcEEEeCCEEEEEEecCC
Confidence            467999999999999999886    3576 79999998765 44 334433     346788999999999999987656


Q ss_pred             cEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccc
Q psy16200        139 KIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGS  177 (183)
Q Consensus       139 ~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~  177 (183)
                      .+. +++             .+|+  +++||.||+|+|.
T Consensus       115 ~~~-v~l-------------~~G~--~i~aD~Vi~A~Gv  137 (137)
T d1m6ia2         115 KLL-IKL-------------KDGR--KVETDHIVAAVGL  137 (137)
T ss_dssp             EEE-EEE-------------TTSC--EEEESEEEECCCE
T ss_pred             EEE-EEE-------------CCCC--EEECCEEEEeecC
Confidence            554 444             2443  7999999999983

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.29  E-value=1.2e-11  Score=91.51  Aligned_cols=98  Identities=10%  Similarity=0.113  Sum_probs=71.7

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCc-eEEEEEeecCCcC-CC-----------CHH-----HHHHHHHcCcEEEeCCcceE
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGAN-KVLVVFRKGCTNI-RA-----------VPE-----EVQLAWEEKCEFLPFMSPVQ  132 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~-~V~lv~r~~~~~~-~~-----------~~~-----~~~~~~~~gv~~~~~~~~~~  132 (183)
                      ||+|||||++|+|+|..|.+++.. +|++++|++...+ +.           ..+     ..+.+.++||++++++.+.+
T Consensus         2 KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~V~~   81 (198)
T d1nhpa1           2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAGMQLYLEGKVKDVNSVRYMTGEKMESRGVNVFSNTEITA   81 (198)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSBCGGGHHHHHTTSSCCGGGSBSCCHHHHHHTTCEEEETEEEEE
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCcccccccCcchhhcccccchHHHHHhhHHHHHHCCcEEEEeeceee
Confidence            699999999999999999988532 6999998653211 00           001     12346788999999999999


Q ss_pred             EEccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccccccC
Q psy16200        133 VDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLD  181 (183)
Q Consensus       133 i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~  181 (183)
                      +..++..++   +..          ..+|++.++++|.+|+|+|..|+.
T Consensus        82 i~~~~~~v~---~~~----------~~~g~~~~~~~D~li~a~G~~~~~  117 (198)
T d1nhpa1          82 IQPKEHQVT---VKD----------LVSGEERVENYDKLIISPGAVPFE  117 (198)
T ss_dssp             EETTTTEEE---EEE----------TTTCCEEEEECSEEEECCCEEECC
T ss_pred             Eeeccccce---eee----------cccccccccccceeeEeecceeec
Confidence            986555543   332          246778899999999999988753

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=99.16  E-value=2.9e-11  Score=88.21  Aligned_cols=93  Identities=15%  Similarity=0.152  Sum_probs=64.1

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCCcCCCCHHH----HH-----------HHHHcCcEEEeCCcceEEE
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEE----VQ-----------LAWEEKCEFLPFMSPVQVD  134 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~~~~~~~~~----~~-----------~~~~~gv~~~~~~~~~~i~  134 (183)
                      .+|+|||||++|+|+|..|.++|. +|+++.++.....+.....    +.           .....+++++++..+.++.
T Consensus         4 a~VvIIGgG~~G~e~A~~l~~~g~-~v~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~i~   82 (183)
T d1d7ya1           4 APVVVLGAGLASVSFVAELRQAGY-QGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRLDCKRAPEVEWLLGVTAQSFD   82 (183)
T ss_dssp             SSEEEECCSHHHHHHHHHHHHHTC-CSCEEEEESSCSCCBCSGGGGTTHHHHCCGGGSBCCGGGSTTCEEEETCCEEEEE
T ss_pred             CCEEEECccHHHHHHHHHHHhcCC-ceEEEEEecccccchhhHHHhhhhhhhhhhhhHHHHHhhcCCeEEEEeccccccc
Confidence            349999999999999999999996 5888877655433332111    11           0123478888888887776


Q ss_pred             ccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccccccC
Q psy16200        135 VKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLD  181 (183)
Q Consensus       135 ~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~  181 (183)
                      .+...+   ++             .+|  +++++|.||+|+|..|++
T Consensus        83 ~~~~~~---~~-------------~~g--~~~~~D~vi~a~G~~p~~  111 (183)
T d1d7ya1          83 PQAHTV---AL-------------SDG--RTLPYGTLVLATGAAPRA  111 (183)
T ss_dssp             TTTTEE---EE-------------TTS--CEEECSEEEECCCEEECC
T ss_pred             ccccee---Ee-------------cCC--cEeeeeeEEEEEEEEccc
Confidence            433322   12             233  378999999999999975

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=99.07  E-value=3.5e-10  Score=81.09  Aligned_cols=95  Identities=16%  Similarity=0.132  Sum_probs=57.9

Q ss_pred             cceEEEEcCChhHHHHHHHHHHcCCc-eEEEEEeecCCcCCCCHHHHH--------------HHHHcCcEEEeCCcceEE
Q psy16200         69 KGTVIVLGAGDTAFDCATSALRCGAN-KVLVVFRKGCTNIRAVPEEVQ--------------LAWEEKCEFLPFMSPVQV  133 (183)
Q Consensus        69 ~~~VvViGgG~~g~e~A~~l~~~G~~-~V~lv~r~~~~~~~~~~~~~~--------------~~~~~gv~~~~~~~~~~i  133 (183)
                      +|||+|||||++|+++|..|.+++.+ +|+++++++............              .....++.+... ....+
T Consensus         2 gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~   80 (186)
T d1fcda1           2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESIKHGYDGLRAHGIQVVHD-SATGI   80 (186)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSCEECSTTHHHHHHTSSCGGGGEECSHHHHTTTEEEECC-CEEEC
T ss_pred             CCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCccccccccccccchhhhhhhhhhhhhhccccceeEeee-eeEee
Confidence            57899999999999999999998742 699999876432222222111              112334444332 11111


Q ss_pred             EccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccccccCC
Q psy16200        134 DVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLDN  182 (183)
Q Consensus       134 ~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~  182 (183)
                      .. ....  +.               ..+.+++++|.||+|+|..||++
T Consensus        81 ~~-~~~~--~~---------------~~~~~~i~~D~li~atG~~~~~~  111 (186)
T d1fcda1          81 DP-DKKL--VK---------------TAGGAEFGYDRCVVAPGIELIYD  111 (186)
T ss_dssp             CT-TTTE--EE---------------ETTSCEEECSEEEECCCEEECCT
T ss_pred             ee-ccce--ee---------------cccceeeccceEEEEeccccchh
Confidence            11 1111  11               12234789999999999999865

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.07  E-value=3.7e-10  Score=80.71  Aligned_cols=89  Identities=15%  Similarity=0.199  Sum_probs=61.3

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCCcCC--CCHHH--------------HHHHHHcCcEEEeCCcceEEE
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIR--AVPEE--------------VQLAWEEKCEFLPFMSPVQVD  134 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~~~~--~~~~~--------------~~~~~~~gv~~~~~~~~~~i~  134 (183)
                      ||+|||||++|+|+|..|++ +. +|+++++++.....  ...+.              .....+.+++++++..+..+.
T Consensus         2 rVvIIGgG~~G~e~A~~l~~-~~-~Vtvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~   79 (167)
T d1xhca1           2 KVVIVGNGPGGFELAKQLSQ-TY-EVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSLDWYRKRGIEIRLAEEAKLID   79 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TS-EEEEECSSSSCCCCSTTHHHHHTTSSCGGGGCSSCHHHHHHHTEEEECSCCEEEEE
T ss_pred             eEEEECCcHHHHHHHHHHHc-CC-CEEEEeccccccccccchhhhhhhhhhhhhhhHHHHHHHHhccceeeeeccccccc
Confidence            69999999999999999966 55 79999986542111  10111              123456789999988888775


Q ss_pred             ccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEccccccc
Q psy16200        135 VKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLL  180 (183)
Q Consensus       135 ~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~  180 (183)
                      . +.++.   .             .++.  ++++|++|+|+|..|+
T Consensus        80 ~-~~~~~---~-------------~~~~--~i~~D~li~a~G~~~~  106 (167)
T d1xhca1          80 R-GRKVV---I-------------TEKG--EVPYDTLVLATGAPNV  106 (167)
T ss_dssp             T-TTTEE---E-------------ESSC--EEECSEEEECCCEECC
T ss_pred             c-ccccc---c-------------cccc--ccccceeEEEEEecCC
Confidence            3 23331   1             1222  5899999999999874

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=99.00  E-value=7.8e-10  Score=79.91  Aligned_cols=94  Identities=13%  Similarity=0.108  Sum_probs=60.4

Q ss_pred             cceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCCcCCCCHHH-------------------HHHHHHcCcEEEeCCc
Q psy16200         69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEE-------------------VQLAWEEKCEFLPFMS  129 (183)
Q Consensus        69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~~~~~~~~~-------------------~~~~~~~gv~~~~~~~  129 (183)
                      .++|+|||||++|+|+|..|.++|. +|+++.++.....+.....                   .......+..+..+..
T Consensus         3 ~~~VvIIGgG~~G~e~A~~l~~~g~-~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (185)
T d1q1ra1           3 NDNVVIVGTGLAGVEVAFGLRASGW-EGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRTPDAYAAQNIQLLGGTQ   81 (185)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTC-CSEEEEECSCCSCCBCSGGGGTTTTTTCSCSGGGBSSCHHHHHHTTEEEECSCC
T ss_pred             CCCEEEECCcHHHHHHHHHHHHcCC-ceEEEEecCccccchhhhHHHHHHHHhhhhhhhhhhhhhhhhcccceeeeccce
Confidence            4679999999999999999999997 6888877654332222111                   0112334455555555


Q ss_pred             ceEEEccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccccccC
Q psy16200        130 PVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLD  181 (183)
Q Consensus       130 ~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~  181 (183)
                      ...+..+...+.   .               ....++++|.+++++|.+|++
T Consensus        82 ~~~~~~~~~~v~---~---------------~~~~~i~~d~~i~~~G~~~~~  115 (185)
T d1q1ra1          82 VTAINRDRQQVI---L---------------SDGRALDYDRLVLATGGRPLI  115 (185)
T ss_dssp             EEEEETTTTEEE---E---------------TTSCEEECSEEEECCCEEEEE
T ss_pred             eeeecccccEEE---e---------------eceeEEEeeeeeeeeecccCC
Confidence            555543222221   1               123479999999999998864

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=98.87  E-value=2.4e-09  Score=78.29  Aligned_cols=84  Identities=15%  Similarity=0.046  Sum_probs=59.6

Q ss_pred             CCcceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCC--------cCCCCH-------HHHHHHHHcCcEEEeCCcce
Q psy16200         67 ILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCT--------NIRAVP-------EEVQLAWEEKCEFLPFMSPV  131 (183)
Q Consensus        67 ~~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~--------~~~~~~-------~~~~~~~~~gv~~~~~~~~~  131 (183)
                      ..++||+|||||..|+++|.+|+++|. +|+|+++.+..        ..|...       ....++++.||+|++++.++
T Consensus        41 ~~~k~V~IIGaGPAGL~AA~~la~~G~-~Vtl~E~~~~~GG~l~~~~~~p~~~~~~~~~~~~~~~~~~~gV~i~l~~~Vt  119 (179)
T d1ps9a3          41 VQKKNLAVVGAGPAGLAFAINAAARGH-QVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTGVTLKLNHTVT  119 (179)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHTTTC-EEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHHHTCEEEESCCCC
T ss_pred             CCCcEEEEECccHHHHHHHHHHHhhcc-ceEEEeccCccCceEEEEEeCcccchHHHHHHHHHHhhhcCCeEEEeCCEEc
Confidence            445789999999999999999999997 79999987542        022221       12234567899999887653


Q ss_pred             EEEccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccccccC
Q psy16200        132 QVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLD  181 (183)
Q Consensus       132 ~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~  181 (183)
                      .   +                        .   ....|.||+|+|..|..
T Consensus       120 ~---~------------------------~---~~~~d~vilAtG~~~~~  139 (179)
T d1ps9a3         120 A---D------------------------Q---LQAFDETILASGIPNRA  139 (179)
T ss_dssp             S---S------------------------S---SCCSSEEEECCCEECCT
T ss_pred             c---c------------------------c---cccceeEEEeecCCCcc
Confidence            1   0                        0   12468899999987754

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=2.9e-09  Score=79.53  Aligned_cols=92  Identities=21%  Similarity=0.268  Sum_probs=63.8

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCC-ceEEEEEeecCCcCCCCHH------------------------------------
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGA-NKVLVVFRKGCTNIRAVPE------------------------------------  112 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~-~~V~lv~r~~~~~~~~~~~------------------------------------  112 (183)
                      .+++|||||++|+++|..|.++|. .+|+++.+.+.  .|+...                                    
T Consensus         5 ~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~--~py~r~~Ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (213)
T d1m6ia1           5 VPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPE--LPYMRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPPS   82 (213)
T ss_dssp             EEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSS--CCBCSGGGGTGGGCC--CTHHHHCEEECTTSCEEESBSSCGG
T ss_pred             CCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCCC--CCccccccceecccccCchhhhhhhhhhcccchhhhhcCChh
Confidence            349999999999999999988763 26999986532  221100                                    


Q ss_pred             ------HHHHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccccccC
Q psy16200        113 ------EVQLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLD  181 (183)
Q Consensus       113 ------~~~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~  181 (183)
                            ....+++.||++++++.+.+|..++..|   ++             .+|+  ++++|.||+|+|..|++
T Consensus        83 ~~~~~~~~~~~~~~gI~~~~g~~V~~id~~~~~V---~l-------------~dG~--~i~~d~lViAtG~~~~~  139 (213)
T d1m6ia1          83 FYVSAQDLPHIENGGVAVLTGKKVVQLDVRDNMV---KL-------------NDGS--QITYEKCLIATGGTEPN  139 (213)
T ss_dssp             GSBCTTTTTTSTTCEEEEEETCCEEEEEGGGTEE---EE-------------TTSC--EEEEEEEEECCCEEEEC
T ss_pred             hhhhhhhHHHHHHCCeEEEeCCEEEEeeccCcee---ee-------------ccce--eeccceEEEeeeeecch
Confidence                  0112245689999999999887644433   23             2344  68999999999988765

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=98.83  E-value=1e-08  Score=77.40  Aligned_cols=92  Identities=16%  Similarity=0.209  Sum_probs=66.1

Q ss_pred             EEEEcCChhHHHHHHHHHHcCCceEEEEEeecCCc------------C-------------CCCHH--------------
Q psy16200         72 VIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTN------------I-------------RAVPE--------------  112 (183)
Q Consensus        72 VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~~------------~-------------~~~~~--------------  112 (183)
                      |+|||||..|+-+|..|++.|. +|+|+++.+...            .             +....              
T Consensus         5 ViIIGaG~aGl~aA~~la~~G~-~V~liEk~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (251)
T d2i0za1           5 VIVIGGGPSGLMAAIGAAEEGA-NVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFSIFNNEDI   83 (251)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHHHSCHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHCCC-cEEEEeCCCCCCcceeccCCcceecccccccchhhcccccchhhhhhhhhhhhhHHH
Confidence            9999999999999999999997 699999753210            0             00000              


Q ss_pred             --------------------------------HHHHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCC
Q psy16200        113 --------------------------------EVQLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDE  160 (183)
Q Consensus       113 --------------------------------~~~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~  160 (183)
                                                      ...++++.||++++++.+.++..+++.+..+.+             .+
T Consensus        84 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~~~~v~~-------------~~  150 (251)
T d2i0za1          84 ITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYENGQTKAVIL-------------QT  150 (251)
T ss_dssp             HHHHHHTTCCEEECGGGEEEETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEE-------------TT
T ss_pred             HHHHHhcCCccccccccceecccccHHHHHHHHHHHHHHcCCcccCCcEEEEEEEECCEEEEEEe-------------CC
Confidence                                            012234568999999999998766777665544             23


Q ss_pred             CceEEEECCEEEEcccccc
Q psy16200        161 EQRIKLKANYIISAFGSTL  179 (183)
Q Consensus       161 g~~~~i~~D~Vi~a~G~~p  179 (183)
                      ++  .+.||.||+|+|...
T Consensus       151 g~--~i~a~~vI~AtGg~S  167 (251)
T d2i0za1         151 GE--VLETNHVVIAVGGKS  167 (251)
T ss_dssp             CC--EEECSCEEECCCCSS
T ss_pred             CC--eEecCeEEEccCCcc
Confidence            33  689999999999653

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=98.83  E-value=1.6e-08  Score=78.44  Aligned_cols=33  Identities=21%  Similarity=0.329  Sum_probs=29.6

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      +|+|||||.+|+-+|..|+++|.++|+|++|+.
T Consensus         3 dViIIGaGi~G~s~A~~La~~G~~~V~liE~~~   35 (305)
T d1pj5a2           3 RIVIIGAGIVGTNLADELVTRGWNNITVLDQGP   35 (305)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence            499999999999999999999964699999863

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.77  E-value=1.1e-11  Score=94.09  Aligned_cols=84  Identities=7%  Similarity=0.059  Sum_probs=56.9

Q ss_pred             ChhhhhhCCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhH
Q psy16200          2 PTLKLRKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTA   81 (183)
Q Consensus         2 ~~~~l~~~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g   81 (183)
                      +.++..+.+||+||||||+. ++.+.++ + .+..++....+ +...            .  ......++|+|+|||++|
T Consensus       131 ~~~~~~~~~~d~vviAtG~~-~~~~~~~-~-~~~~~~~~~~~-~~~~------------~--~~~~~~~~vvViGgG~~g  192 (233)
T d1djqa3         131 TADDVLQYGADKVIIATGAS-ECTLWNE-L-KARESEWAEND-IKGI------------Y--LIGDAEAPRLIADATFTG  192 (233)
T ss_dssp             CHHHHHTSCCSEEEECCCEE-CCHHHHH-H-HHTTHHHHHTT-CCEE------------E--ECGGGTSCCCHHHHHHHH
T ss_pred             cchhhhhhccceeeeccCCC-ccccccc-c-cccccccchhh-hhhh------------h--hccccCCceeEecCchHH
Confidence            45677788999999999984 6655555 2 33333221111 0000            0  012234569999999999


Q ss_pred             HHHHHHHHHcCCceEEEEEeecC
Q psy16200         82 FDCATSALRCGANKVLVVFRKGC  104 (183)
Q Consensus        82 ~e~A~~l~~~G~~~V~lv~r~~~  104 (183)
                      +|+|..|++.|. +|++++|+..
T Consensus       193 ~e~A~~l~~~g~-~Vtli~r~~~  214 (233)
T d1djqa3         193 HRVAREIEEANP-QIAIPYKRET  214 (233)
T ss_dssp             HHHHHTTTSSCT-TSCCCCCCCC
T ss_pred             HHHHHHHHhcCC-ceEEEEeccc
Confidence            999999999996 6999999865

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=98.75  E-value=5.7e-08  Score=75.49  Aligned_cols=49  Identities=14%  Similarity=0.108  Sum_probs=38.2

Q ss_pred             HHcCcEEEeCCcceEEEc-cCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccc
Q psy16200        118 WEEKCEFLPFMSPVQVDV-KDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGS  177 (183)
Q Consensus       118 ~~~gv~~~~~~~~~~i~~-~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~  177 (183)
                      .+.|+++++++.++++.. ++++|.++.+.+           ..+....+.|+.||+|+|-
T Consensus       156 ~~~gv~i~~~~~v~~li~~~~G~V~Gv~~~~-----------~~~~~~~i~Ak~VVlAtGG  205 (308)
T d1y0pa2         156 VKRNIDLRMNTRGIEVLKDDKGTVKGILVKG-----------MYKGYYWVKADAVILATGG  205 (308)
T ss_dssp             HHTTCEEESSEEEEEEEECTTSCEEEEEEEE-----------TTTEEEEEECSEEEECCCC
T ss_pred             HhccceEEEeeccchhhhhcccccccccccc-----------cccceeEeecCeEEEccCc
Confidence            346889999999988765 456899988753           3445678999999999993

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.70  E-value=5.4e-08  Score=76.79  Aligned_cols=35  Identities=26%  Similarity=0.428  Sum_probs=30.2

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCC-ceEEEEEeecC
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGA-NKVLVVFRKGC  104 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~-~~V~lv~r~~~  104 (183)
                      |||+|||||.+|+.+|..|++.|. .+|++++|++.
T Consensus         5 KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~   40 (335)
T d2gv8a1           5 RKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGS   40 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSS
T ss_pred             CeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence            689999999999999999988763 37999999753

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=98.67  E-value=4.4e-08  Score=71.23  Aligned_cols=92  Identities=15%  Similarity=0.192  Sum_probs=58.8

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCC----------cCCC-----CHHHH-----HHHHHcCcEEEeCCc
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCT----------NIRA-----VPEEV-----QLAWEEKCEFLPFMS  129 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~----------~~~~-----~~~~~-----~~~~~~gv~~~~~~~  129 (183)
                      ++|+|||||++|+++|.++++.|. +|++|++....          ..+.     ...++     .++.+.++++... .
T Consensus         6 ~dVvIIGGGpaGl~AA~~~ar~g~-~v~iie~~~~~g~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~   83 (190)
T d1trba1           6 SKLLILGSGPAGYTAAVYAARANL-QPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFD-H   83 (190)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTC-CCEEECCSSTTGGGGGCSBCCCSTTCCSSCBHHHHHHHHHHHHHHTTCEEECC-C
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCC-ceEEEEeecccccccccchhhhhhccccccchHHHHHHHHHHHHhcCcEEecc-e
Confidence            469999999999999999999997 69999875321          0111     11222     2345667777654 3


Q ss_pred             ceEEEccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEccccccc
Q psy16200        130 PVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLL  180 (183)
Q Consensus       130 ~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~  180 (183)
                      +.++...++... ++                .....++++.+++++|..|.
T Consensus        84 V~~~~~~~~~~~-v~----------------~~~~~~~~~~viva~G~~~~  117 (190)
T d1trba1          84 INKVDLQNRPFR-LN----------------GDNGEYTCDALIIATGASAR  117 (190)
T ss_dssp             EEEEECSSSSEE-EE----------------ESSCEEEEEEEEECCCEEEC
T ss_pred             eEEEecCCCcEE-EE----------------EeeeeEeeeeeeeecceeee
Confidence            455543333221 11                12346788999999997653

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.64  E-value=1.7e-08  Score=67.38  Aligned_cols=36  Identities=17%  Similarity=0.178  Sum_probs=30.4

Q ss_pred             CcceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200         68 LKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC  104 (183)
Q Consensus        68 ~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~  104 (183)
                      .+|+|+|||+|++|+|+|..|++.. ++|+++.|++.
T Consensus        31 ~gK~VlVVG~g~Sa~dia~~l~~~a-k~v~~~~~r~~   66 (107)
T d2gv8a2          31 VGESVLVVGGASSANDLVRHLTPVA-KHPIYQSLLGG   66 (107)
T ss_dssp             TTCCEEEECSSHHHHHHHHHHTTTS-CSSEEEECTTC
T ss_pred             CCCeEEEECCCCCHHHHHHHHHHhc-CEEEEEEecCc
Confidence            4566999999999999999999986 57888887754

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=98.60  E-value=1.6e-07  Score=73.59  Aligned_cols=49  Identities=14%  Similarity=0.143  Sum_probs=37.3

Q ss_pred             HHcCcEEEeCCcceEEEc-cCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccc
Q psy16200        118 WEEKCEFLPFMSPVQVDV-KDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGS  177 (183)
Q Consensus       118 ~~~gv~~~~~~~~~~i~~-~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~  177 (183)
                      .+.|+++++++.+.++.. ++++|+++.+.+           ..++...+.|+.||+|+|-
T Consensus       163 ~~~gv~i~~~t~v~~li~d~~G~V~Gv~~~~-----------~~~~~~~i~Ak~VIlAtGG  212 (322)
T d1d4ca2         163 VKRGTDIRLNSRVVRILEDASGKVTGVLVKG-----------EYTGYYVIKADAVVIAAGG  212 (322)
T ss_dssp             HHTTCEEETTEEEEEEECCSSSCCCEEEEEE-----------TTTEEEEEECSEEEECCCC
T ss_pred             HhcCceEEEeeecccccccccccccceEEEe-----------ecccEEEEeCCeEEEcCCC
Confidence            456889999999988765 456888887653           2345678999999999983

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.51  E-value=2.1e-07  Score=67.83  Aligned_cols=32  Identities=25%  Similarity=0.257  Sum_probs=29.1

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      ++|+|||||+.|+++|.+|+++|. +|.++++.
T Consensus         6 ~~VvIIGgGpaGl~aA~~~ar~g~-~v~vie~~   37 (192)
T d1vdca1           6 TRLCIVGSGPAAHTAAIYAARAEL-KPLLFEGW   37 (192)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTC-CCEEECCS
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCC-cEEEEEee
Confidence            569999999999999999999997 69999864

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=98.50  E-value=5.3e-07  Score=70.48  Aligned_cols=49  Identities=16%  Similarity=0.144  Sum_probs=37.5

Q ss_pred             HHcCcEEEeCCcceEEEc-cCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccc
Q psy16200        118 WEEKCEFLPFMSPVQVDV-KDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGS  177 (183)
Q Consensus       118 ~~~gv~~~~~~~~~~i~~-~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~  177 (183)
                      ++.|+++++++.+.++.. +++++.++.+..           .+++...+.++.||+|+|-
T Consensus       159 ~~~g~~i~~~~~v~~l~~~~~g~V~Gv~~~~-----------~~~~~~~i~Ak~VVlAtGG  208 (317)
T d1qo8a2         159 KEQGIDTRLNSRVVKLVVNDDHSVVGAVVHG-----------KHTGYYMIGAKSVVLATGG  208 (317)
T ss_dssp             HHTTCCEECSEEEEEEEECTTSBEEEEEEEE-----------TTTEEEEEEEEEEEECCCC
T ss_pred             hhccceeeeccchhheeecccccceeeEeec-----------ccceEEEEeccceEEeccc
Confidence            445788999988888754 567888887653           3556678899999999994

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=98.50  E-value=4.8e-07  Score=68.43  Aligned_cols=32  Identities=28%  Similarity=0.423  Sum_probs=29.3

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      +|+|||||..|+-+|..|+++|. +|+|+++.+
T Consensus         6 DViIIGaG~aGl~aA~~la~~G~-~V~vlEk~~   37 (253)
T d2gqfa1           6 ENIIIGAGAAGLFCAAQLAKLGK-SVTVFDNGK   37 (253)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTC-CEEEECSSS
T ss_pred             cEEEECcCHHHHHHHHHHHHCCC-cEEEEecCC
Confidence            39999999999999999999997 699999864

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=98.48  E-value=4.8e-07  Score=69.00  Aligned_cols=31  Identities=32%  Similarity=0.409  Sum_probs=28.8

Q ss_pred             EEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         72 VIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        72 VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      |+|||||.+|+-+|..|+++|. +|+|++++.
T Consensus         6 vvIIGaGi~Gls~A~~La~~G~-~V~viE~~~   36 (281)
T d2gf3a1           6 VIVVGAGSMGMAAGYQLAKQGV-KTLLVDAFD   36 (281)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEECSSC
T ss_pred             EEEECcCHHHHHHHHHHHHCCC-cEEEEeCCC
Confidence            9999999999999999999997 699999853

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=98.48  E-value=7.4e-07  Score=66.93  Aligned_cols=35  Identities=20%  Similarity=0.173  Sum_probs=31.6

Q ss_pred             cceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200         69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC  104 (183)
Q Consensus        69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~  104 (183)
                      .+||+|||||..|+-+|..|++.|. +|+|++|++.
T Consensus         4 ~~kV~IiGaG~aGl~~A~~L~~~G~-~v~v~Er~~~   38 (265)
T d2voua1           4 TDRIAVVGGSISGLTAALMLRDAGV-DVDVYERSPQ   38 (265)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSS
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCC-CEEEEeCCCC
Confidence            4789999999999999999999998 7999998653

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.47  E-value=6.2e-08  Score=70.19  Aligned_cols=37  Identities=22%  Similarity=0.452  Sum_probs=33.5

Q ss_pred             CcceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200         68 LKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC  104 (183)
Q Consensus        68 ~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~  104 (183)
                      .++||+|||||++|+++|.+|+++|.+.|+|++|++.
T Consensus         3 ~~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~   39 (196)
T d1gtea4           3 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQEY   39 (196)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSS
T ss_pred             CCCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCc
Confidence            4688999999999999999999999856999999765

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=98.41  E-value=7.1e-07  Score=67.70  Aligned_cols=30  Identities=13%  Similarity=0.082  Sum_probs=28.4

Q ss_pred             EEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         72 VIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        72 VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      |+|||||.+|+-+|..|+++|. +|+|+++.
T Consensus         7 vvIIGaGi~Gls~A~~La~~G~-~V~vlE~~   36 (276)
T d1ryia1           7 AVVIGGGIIGSAIAYYLAKENK-NTALFESG   36 (276)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCC-cEEEEeCC
Confidence            9999999999999999999996 69999974

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.41  E-value=1.9e-06  Score=64.87  Aligned_cols=34  Identities=24%  Similarity=0.419  Sum_probs=30.7

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC  104 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~  104 (183)
                      +|+|||||..|+-+|..|+++|..+|+|++|++.
T Consensus         3 ~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~   36 (288)
T d3c96a1           3 DILIAGAGIGGLSCALALHQAGIGKVTLLESSSE   36 (288)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence            6999999999999999999999657999999754

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=98.41  E-value=5.1e-07  Score=67.99  Aligned_cols=32  Identities=19%  Similarity=0.290  Sum_probs=29.3

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      +|+|||||..|+.+|..|++.|. +|+|+++++
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~-~V~vlE~~~   33 (347)
T d2ivda1           2 NVAVVGGGISGLAVAHHLRSRGT-DAVLLESSA   33 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHTTTC-CEEEECSSS
T ss_pred             eEEEECCCHHHHHHHHHHHhCCC-CEEEEecCC
Confidence            49999999999999999999997 699999854

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=98.36  E-value=1.7e-06  Score=65.04  Aligned_cols=91  Identities=16%  Similarity=0.168  Sum_probs=60.3

Q ss_pred             EEEEcCChhHHHHHHHHHHcCCceEEEEEeecC--CcCCCCH-----------H--------------HHHHH--HHcCc
Q psy16200         72 VIVLGAGDTAFDCATSALRCGANKVLVVFRKGC--TNIRAVP-----------E--------------EVQLA--WEEKC  122 (183)
Q Consensus        72 VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~--~~~~~~~-----------~--------------~~~~~--~~~gv  122 (183)
                      |+|||||..|+++|.++++.|. +|.||+.+..  ..|+..+           .              .+++.  ...++
T Consensus         5 VIVIGgG~AG~eAA~~aAR~G~-ktllit~~~~~ig~~~cnp~~gg~~kg~l~reid~kG~av~a~raQ~k~~l~~~~nL   83 (230)
T d2cula1           5 VLIVGAGFSGAETAFWLAQKGV-RVGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPKDERVWAFHARAKYLLEGLRPL   83 (230)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEEESCGGGTTCCSSCCCSCCCTTCHHHHHCCTTCCCHHHHHHHHHHHHHTCTTE
T ss_pred             EEEECcCHHHHHHHHHHHHCCC-cEEEEEeccchhcccccCCccccCCCcceeeeeeccchhhhhHHHHHHHHHhhhcCH
Confidence            9999999999999999999998 5999986421  0011110           0              01111  12467


Q ss_pred             EEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccccc
Q psy16200        123 EFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTL  179 (183)
Q Consensus       123 ~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p  179 (183)
                      .++.. .+.++..+++++.+|+.             .+|.  ++.|..||+++|---
T Consensus        84 ~i~q~-~V~dli~e~~~v~gV~t-------------~~G~--~~~AkaVILtTGTFL  124 (230)
T d2cula1          84 HLFQA-TATGLLLEGNRVVGVRT-------------WEGP--PARGEKVVLAVGSFL  124 (230)
T ss_dssp             EEEEC-CEEEEEEETTEEEEEEE-------------TTSC--CEECSEEEECCTTCS
T ss_pred             HHHhc-cceeeEecccceeeEEe-------------cccc--EEEEeEEEEccCcce
Confidence            77644 45566556777877765             2343  689999999999643

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=98.32  E-value=1.9e-06  Score=67.17  Aligned_cols=50  Identities=14%  Similarity=0.007  Sum_probs=36.9

Q ss_pred             HcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEccccc
Q psy16200        119 EEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGST  178 (183)
Q Consensus       119 ~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~  178 (183)
                      +.|++++.++.+.++..+++++.++.+.+          ..+|+...+.++.||+|+|--
T Consensus       170 ~~gv~i~~~~~~~~li~~~~~v~g~~~~~----------~~~g~~~~i~Ak~VvlATGG~  219 (336)
T d2bs2a2         170 KLGVSIQDRKEAIALIHQDGKCYGAVVRD----------LVTGDIIAYVAKGTLIATGGY  219 (336)
T ss_dssp             HHTCEEECSEEEEEEEEETTEEEEEEEEE----------TTTCCEEEEECSEEEECCCCC
T ss_pred             hccccccceeeeeecccccccccceeEEe----------ccCCcEEEEecCeEEEecccc
Confidence            34677888877777766677777666543          256778889999999999854

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=98.30  E-value=4.6e-07  Score=67.09  Aligned_cols=64  Identities=17%  Similarity=0.286  Sum_probs=47.3

Q ss_pred             CcccCCCCCCccCCC-ceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHHHHHHHHcCCceEEEEEe
Q psy16200         23 ANVIPIFQGLTEEMG-FYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFR  101 (183)
Q Consensus        23 p~~l~i~gg~~~~~~-V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r  101 (183)
                      |+.|.+| |++.++| |+++.+|-..                ....-+|||+|||+|.+|+|+|..+++.++ +++++.|
T Consensus         2 P~iP~~p-G~e~F~G~v~HS~~~~~~----------------~~~~~gK~V~VvG~G~Sa~dia~~~~~~~~-~~~~~~~   63 (235)
T d1w4xa2           2 PQLPNFP-GLKDFAGNLYHTGNWPHE----------------PVDFSGQRVGVIGTGSSGIQVSPQIAKQAA-ELFVFQR   63 (235)
T ss_dssp             CCCCCCT-TGGGCCSEEEEGGGCCSS----------------CCCCBTCEEEEECCSHHHHHHHHHHHHHBS-EEEEEES
T ss_pred             CCCCCCC-ChhhCCCcEEecCcCCCC----------------CCCCCCCEEEEECCCccHHHHHHHHHhhhc-ccccccc
Confidence            7788899 7778887 5666655210                112245679999999999999999999986 6888877


Q ss_pred             ecC
Q psy16200        102 KGC  104 (183)
Q Consensus       102 ~~~  104 (183)
                      ++.
T Consensus        64 ~~~   66 (235)
T d1w4xa2          64 TPH   66 (235)
T ss_dssp             SCC
T ss_pred             ccc
Confidence            653

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.29  E-value=1.1e-06  Score=64.59  Aligned_cols=31  Identities=26%  Similarity=0.517  Sum_probs=28.9

Q ss_pred             EEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         72 VIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        72 VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      |+|||||..|+.+|.+++++|. +|++|++++
T Consensus         6 vvVIGgGpaGl~aA~~aa~~G~-kV~vie~~~   36 (221)
T d1dxla1           6 VVIIGGGPGGYVAAIKAAQLGF-KTTCIEKRG   36 (221)
T ss_dssp             EEEECCSHHHHHHHHHHHHHTC-CEEEEECSS
T ss_pred             EEEECCCHHHHHHHHHHHHCCC-cEEEEEecC
Confidence            9999999999999999999997 699999864

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.27  E-value=9.9e-07  Score=63.06  Aligned_cols=94  Identities=19%  Similarity=0.195  Sum_probs=56.8

Q ss_pred             EEEEcCChhHHHHHHHHHHcCCceEEEEEeecCCcC---------CCC----HHHH-----HHHHHcCcEEEeCCcceEE
Q psy16200         72 VIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNI---------RAV----PEEV-----QLAWEEKCEFLPFMSPVQV  133 (183)
Q Consensus        72 VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~~~---------~~~----~~~~-----~~~~~~gv~~~~~~~~~~i  133 (183)
                      |+|||||++|+++|.+++++|. +|++++++....+         +..    ...+     ..+.+.++++........+
T Consensus         4 ViIIGgGpaGl~AAi~aar~G~-~v~iie~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (184)
T d1fl2a1           4 VLIVGSGPAGAAAAIYSARKGI-RTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALKVHVDEYDVDVIDSQSASKL   82 (184)
T ss_dssp             EEEECCSHHHHHHHHHHHTTTC-CEEEECSSTTGGGGGCCEECCBTTBSSEEHHHHHHHHHHHHHTSCEEEECSCCEEEE
T ss_pred             EEEECcCHHHHHHHHHHHHcCC-eEEEEEEecCCcccccccceeccccchhhhHHHHHHHHHHhhheeceeeccceeeee
Confidence            9999999999999999999997 6999997531111         111    1111     1233455666666555555


Q ss_pred             EccC-C-cEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccccccC
Q psy16200        134 DVKD-N-KIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLLD  181 (183)
Q Consensus       134 ~~~~-~-~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~  181 (183)
                      .... . .....               ......++.++.+++++|..++.
T Consensus        83 ~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~g~~~~~  117 (184)
T d1fl2a1          83 IPAAVEGGLHQI---------------ETASGAVLKARSIIVATGAKLPN  117 (184)
T ss_dssp             ECCSSTTCCEEE---------------EETTSCEEEEEEEEECCCEEEES
T ss_pred             cccccccceeee---------------eeecceeeecccccccccccccc
Confidence            4311 1 11101               11123367899999999876643

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.25  E-value=2.8e-06  Score=63.41  Aligned_cols=32  Identities=22%  Similarity=0.422  Sum_probs=27.7

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCc--eEEEEEee
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGAN--KVLVVFRK  102 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~--~V~lv~r~  102 (183)
                      ||+|||||..|+.+|.+++++|.+  +|+++++.
T Consensus         3 ~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~   36 (233)
T d1xdia1           3 RIVILGGGPAGYEAALVAATSHPETTQVTVIDCD   36 (233)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESS
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecC
Confidence            699999999999999999988743  69999864

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.24  E-value=4.7e-06  Score=63.16  Aligned_cols=32  Identities=22%  Similarity=0.216  Sum_probs=29.2

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      .|+|||||..|+++|..++++|. +|+++++.+
T Consensus        44 DvvVIGgG~aG~~aA~~~a~~G~-kv~vve~~~   75 (261)
T d1mo9a1          44 DAIFIGGGAAGRFGSAYLRAMGG-RQLIVDRWP   75 (261)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTC-CEEEEESSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC-eEEEEeccC
Confidence            39999999999999999999997 699999754

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.23  E-value=1.6e-06  Score=66.29  Aligned_cols=32  Identities=19%  Similarity=0.339  Sum_probs=29.9

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      +|+|||||.+|+-+|..|+++|. +|+|+++++
T Consensus         4 ~V~IvGaGp~Gl~~A~~L~~~G~-~v~vlE~~~   35 (292)
T d1k0ia1           4 QVAIIGAGPSGLLLGQLLHKAGI-DNVILERQT   35 (292)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTC-CEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCC-CEEEEeCCC
Confidence            59999999999999999999998 699999865

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=98.19  E-value=3.8e-06  Score=65.50  Aligned_cols=47  Identities=17%  Similarity=0.222  Sum_probs=38.3

Q ss_pred             CcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccc
Q psy16200        121 KCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGS  177 (183)
Q Consensus       121 gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~  177 (183)
                      +|+++.++.+.++..+++++.++...+.          .+|+...+.++.||+|+|-
T Consensus       149 ~v~i~~~~~v~~Ll~d~g~v~Gvv~~~~----------~~g~~~~~~AkaVILATGG  195 (311)
T d1kf6a2         149 QIQRFDEHFVLDILVDDGHVRGLVAMNM----------MEGTLVQIRANAVVMATGG  195 (311)
T ss_dssp             TEEEEETEEEEEEEEETTEEEEEEEEET----------TTTEEEEEECSCEEECCCC
T ss_pred             cceeEeeeEeeeeEecCCcceeEEEEEc----------CCCcEEEEECCEEEEcCCC
Confidence            6899999999998877888888765431          4677788899999999984

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.00  E-value=1.2e-05  Score=58.99  Aligned_cols=31  Identities=23%  Similarity=0.394  Sum_probs=28.6

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      .++|||||..|+++|..++++|. +|+||++.
T Consensus         7 DlvVIG~GpaGl~aA~~aa~~G~-~V~liE~~   37 (220)
T d1lvla1           7 TLLIIGGGPGGYVAAIRAGQLGI-PTVLVEGQ   37 (220)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTC-CEEEECSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC-cEEEEecC
Confidence            49999999999999999999997 69999864

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.00  E-value=2.8e-06  Score=64.42  Aligned_cols=30  Identities=37%  Similarity=0.515  Sum_probs=28.1

Q ss_pred             EEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         72 VIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        72 VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      |+|||||..|+.+|..++++|. +|.|+++.
T Consensus         4 viVIG~G~aG~~aA~~aa~~G~-~V~liE~~   33 (259)
T d1onfa1           4 LIVIGGGSGGMAAARRAARHNA-KVALVEKS   33 (259)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCC-eEEEEecC
Confidence            8999999999999999999997 69999974

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=97.98  E-value=2.6e-06  Score=63.92  Aligned_cols=35  Identities=29%  Similarity=0.286  Sum_probs=31.5

Q ss_pred             cceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200         69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC  104 (183)
Q Consensus        69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~  104 (183)
                      +|||+|||||..|+-+|..|++.|. +|+|++++++
T Consensus         1 ~KkV~IIGaG~aGL~aA~~La~~G~-~V~vlE~~~~   35 (373)
T d1seza1           1 AKRVAVIGAGVSGLAAAYKLKIHGL-NVTVFEAEGK   35 (373)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSC-EEEEECSSSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCC-CEEEEeCCCC
Confidence            4789999999999999999999997 7999998653

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=97.94  E-value=4.1e-05  Score=59.29  Aligned_cols=32  Identities=28%  Similarity=0.341  Sum_probs=29.2

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      +|+|||||.+|+-+|..|.+.|. +|+++++.+
T Consensus         9 dV~IIGAG~sGl~~a~~L~~~G~-~v~i~Ek~~   40 (298)
T d1w4xa1           9 DVLVVGAGFSGLYALYRLRELGR-SVHVIETAG   40 (298)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-CEEEECSSS
T ss_pred             CEEEECccHHHHHHHHHHHhCCC-CEEEEEcCC
Confidence            59999999999999999999997 699999753

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.85  E-value=5.6e-06  Score=60.48  Aligned_cols=33  Identities=27%  Similarity=0.426  Sum_probs=29.8

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      +|+|||||..|+.+|..|++.|.++|+|+++++
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~   34 (347)
T d1b5qa1           2 RVIVVGAGMSGISAAKRLSEAGITDLLILEATD   34 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred             CEEEECCcHHHHHHHHHHHhCCCCcEEEEECCC
Confidence            499999999999999999999964699999865

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=97.85  E-value=7.4e-06  Score=62.52  Aligned_cols=37  Identities=22%  Similarity=0.249  Sum_probs=32.6

Q ss_pred             CCCcceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         66 PILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        66 ~~~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      ..-++||+|||||..|+-+|..|++.|. +|+|+++++
T Consensus        27 ~~~pkkV~IIGaG~aGLsaA~~L~~~G~-~V~vlE~~~   63 (370)
T d2iida1          27 TSNPKHVVIVGAGMAGLSAAYVLAGAGH-QVTVLEASE   63 (370)
T ss_dssp             CSSCCEEEEECCBHHHHHHHHHHHHHTC-EEEEECSSS
T ss_pred             CCCCCeEEEECCCHHHHHHHHHHHHCCC-CEEEEeCCC
Confidence            3456789999999999999999999997 799999754

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=97.79  E-value=1.3e-05  Score=59.25  Aligned_cols=34  Identities=29%  Similarity=0.379  Sum_probs=31.0

Q ss_pred             CcceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         68 LKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        68 ~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      ..+||+|||||..|+-+|..|+++|. +|+|++|+
T Consensus         5 ~~~kVvVIGaGiaGl~~A~~L~~~G~-~V~vier~   38 (268)
T d1c0pa1           5 SQKRVVVLGSGVIGLSSALILARKGY-SVHILARD   38 (268)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             CCCcEEEECccHHHHHHHHHHHHCCC-CEEEEeCC
Confidence            34679999999999999999999997 79999985

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.75  E-value=6.5e-05  Score=55.30  Aligned_cols=31  Identities=26%  Similarity=0.400  Sum_probs=28.4

Q ss_pred             EEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         72 VIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        72 VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      |+|||||..|+.+|.+++++|. +|.++++.+
T Consensus         6 viVIG~GpaGl~aA~~aa~~G~-kV~viE~~~   36 (235)
T d1h6va1           6 LIIIGGGSGGLAAAKEAAKFDK-KVMVLDFVT   36 (235)
T ss_dssp             EEEECCSHHHHHHHHHHGGGCC-CEEEECCCC
T ss_pred             EEEECCCHHHHHHHHHHHHCCC-eEEEEeccC
Confidence            9999999999999999999997 699998643

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.72  E-value=1.7e-05  Score=59.91  Aligned_cols=34  Identities=24%  Similarity=0.417  Sum_probs=31.0

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC  104 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~  104 (183)
                      .||+|||||..|+-+|..|++.|. +|+|++++++
T Consensus         6 ~kViVIGaG~aGL~aA~~L~~~G~-~V~VlEa~~r   39 (449)
T d2dw4a2           6 GKVIIIGSGVSGLAAARQLQSFGM-DVTLLEARDR   39 (449)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHTTC-EEEEECSSSS
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCC-CEEEEeCCCC
Confidence            569999999999999999999997 7999998654

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.71  E-value=2.8e-08  Score=75.91  Aligned_cols=35  Identities=17%  Similarity=0.207  Sum_probs=21.2

Q ss_pred             CCCCEEEEccCCCCCc--ccCCCCCC-ccCCCceehhhhH
Q psy16200          9 DGYTAIFIGIGKPNAN--VIPIFQGL-TEEMGFYTSKTFL   45 (183)
Q Consensus         9 ~~~davviATGa~~p~--~l~i~gg~-~~~~~V~~~~~~l   45 (183)
                      ..+|.||||||++ |.  .+.+| ++ -+..+++++..++
T Consensus       139 i~a~~iiIATGs~-P~~~~~~~~-~~~l~~~~i~ts~~~~  176 (259)
T d1onfa1         139 LEGRNILIAVGNK-PVGRSPDTE-NLKLEKLNVETNNNYI  176 (259)
T ss_dssp             -CBSSEEECCCCC-BCCBCCTTT-TSSCTTTTCCBSSSCE
T ss_pred             EeeeeEEEecCCC-Ccccccccc-ccccccceeeeccccc
Confidence            4679999999984 62  22333 21 2445677766654

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=97.65  E-value=0.0002  Score=54.27  Aligned_cols=107  Identities=16%  Similarity=0.213  Sum_probs=63.4

Q ss_pred             eEEEEcCChhHHHHHHHHHH-cCCceEEEEEeecCCc--------C-CCC------HH----------------------
Q psy16200         71 TVIVLGAGDTAFDCATSALR-CGANKVLVVFRKGCTN--------I-RAV------PE----------------------  112 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~-~G~~~V~lv~r~~~~~--------~-~~~------~~----------------------  112 (183)
                      .|+|||||..|+.+|..|++ .|. +|+++++++..-        + +..      ..                      
T Consensus        35 DViVIGaGpaGL~aA~~LA~~~G~-~V~vlE~~~~~GG~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  113 (278)
T d1rp0a1          35 DVVVVGAGSAGLSAAYEISKNPNV-QVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDTYVVVKHAA  113 (278)
T ss_dssp             EEEEECCSHHHHHHHHHHHTSTTS-CEEEEESSSSCCTTTTCCSTTCCCEEEETTTHHHHHHHTCCCEECSSEEEESCHH
T ss_pred             CEEEECCCHHHHHHHHHHHHccCC-eEEEEecCCCCCCceeecCEEcCHHHHhhhHHHHHHHcCCceecCCccceecccH
Confidence            49999999999999999987 597 699999875310        0 000      00                      


Q ss_pred             -HH-----HHHHHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccccc
Q psy16200        113 -EV-----QLAWEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTL  179 (183)
Q Consensus       113 -~~-----~~~~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p  179 (183)
                       .+     ..+...++.+.....+..+..+++++.++............ ........++.++.+|.|.|...
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~gv~~~~~~~~~~~~-~~~~~~~~~~~a~~vv~a~G~~~  185 (278)
T d1rp0a1         114 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHH-TQSCMDPNVMEAKIVVSSCGHDG  185 (278)
T ss_dssp             HHHHHHHHHHHTSTTEEEEETEEEEEEEEETTEEEEEEEEEHHHHTCTT-TSSCCCCEEEEEEEEEECCCSSS
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCcceeeeecCCeEEEEEeccceeeeeec-ccccccceeeccceEEECcCCCc
Confidence             00     01123356666676666665556667665432100000000 01122345789999999999764

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=97.61  E-value=0.00015  Score=56.41  Aligned_cols=30  Identities=20%  Similarity=0.391  Sum_probs=28.1

Q ss_pred             EEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         72 VIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        72 VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      |+|||+|..|+-+|..+++.|. +|+|+++.
T Consensus        10 VlVVG~G~AGl~AAl~aa~~G~-~V~lleK~   39 (330)
T d1neka2          10 AVVIGAGGAGMRAALQISQSGQ-TCALLSKV   39 (330)
T ss_dssp             CEEECCSHHHHHHHHHHHHTTC-CCEEECSS
T ss_pred             EEEECcCHHHHHHHHHHHHcCC-eEEEEeCC
Confidence            9999999999999999999997 69999874

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.60  E-value=3.8e-05  Score=57.01  Aligned_cols=37  Identities=22%  Similarity=0.276  Sum_probs=32.7

Q ss_pred             CCcceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200         67 ILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC  104 (183)
Q Consensus        67 ~~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~  104 (183)
                      ..+++|+|||||..|+.+|..|+++|. +|+++++++.
T Consensus        47 ~~~k~VvIIGaGpAGl~aA~~l~~~G~-~v~l~E~~~~   83 (233)
T d1djqa3          47 KNKDSVLIVGAGPSGSEAARVLMESGY-TVHLTDTAEK   83 (233)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSS
T ss_pred             cCCceEEEEcccHHHHHHHHHHHHhcc-ceeeEeeccc
Confidence            355779999999999999999999997 7999998664

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=97.59  E-value=2.8e-05  Score=60.58  Aligned_cols=34  Identities=15%  Similarity=0.255  Sum_probs=31.4

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC  104 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~  104 (183)
                      +||+|||||.+|+-+|..|++.|. +|+|++++++
T Consensus         3 KKI~IIGaG~sGL~aA~~L~k~G~-~V~viEk~~~   36 (314)
T d2bi7a1           3 KKILIVGAGFSGAVIGRQLAEKGH-QVHIIDQRDH   36 (314)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTC-EEEEEESSSS
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCC-CEEEEECCCC
Confidence            679999999999999999999996 7999999765

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.55  E-value=3.1e-05  Score=56.05  Aligned_cols=32  Identities=34%  Similarity=0.283  Sum_probs=29.6

Q ss_pred             EEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200         72 VIVLGAGDTAFDCATSALRCGANKVLVVFRKGC  104 (183)
Q Consensus        72 VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~  104 (183)
                      |+|||+|..|+-+|..|++.|. +|+|+++++.
T Consensus         8 viViGaG~~Gl~~A~~La~~G~-~V~vlE~~~~   39 (297)
T d2bcgg1           8 VIVLGTGITECILSGLLSVDGK-KVLHIDKQDH   39 (297)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEECSSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCC-CEEEEcCCCC
Confidence            9999999999999999999996 7999999753

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.53  E-value=8e-05  Score=54.58  Aligned_cols=61  Identities=16%  Similarity=0.111  Sum_probs=43.5

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCc------eEEEEEeecCCc-------CCCC-------HHHHHHHHHcCcEEEeCCc
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGAN------KVLVVFRKGCTN-------IRAV-------PEEVQLAWEEKCEFLPFMS  129 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~------~V~lv~r~~~~~-------~~~~-------~~~~~~~~~~gv~~~~~~~  129 (183)
                      .||+|||+|..|+.+|..|+++|.+      +|+++++.+..-       .|..       ......+...|+.++++..
T Consensus         3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~GG~~~~gi~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~   82 (239)
T d1lqta2           3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVAPDHPKIKSISKQFEKTAEDPRFRFFGNVV   82 (239)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHHHTSCTTCTGGGGGHHHHHHHHTSTTEEEEESCC
T ss_pred             cEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCCCCeeeeccCcccccchhhhhhhhhhhccCCceEEEEEE
Confidence            5799999999999999999998731      699999875421       1221       1122345667899988866


Q ss_pred             c
Q psy16200        130 P  130 (183)
Q Consensus       130 ~  130 (183)
                      +
T Consensus        83 v   83 (239)
T d1lqta2          83 V   83 (239)
T ss_dssp             B
T ss_pred             e
Confidence            5

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=97.49  E-value=0.00017  Score=45.87  Aligned_cols=34  Identities=24%  Similarity=0.337  Sum_probs=30.4

Q ss_pred             cceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      ++||+|+|.|-+|+.+|++|.++|+ +|++.+.+.
T Consensus         5 ~K~v~ViGlG~sG~s~a~~L~~~g~-~v~~~D~~~   38 (93)
T d2jfga1           5 GKNVVIIGLGLTGLSCVDFFLARGV-TPRVMDTRM   38 (93)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHHTTC-CCEEEESSS
T ss_pred             CCEEEEEeECHHHHHHHHHHHHCCC-EEEEeeCCc
Confidence            4669999999999999999999998 699998754

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.48  E-value=5e-05  Score=52.76  Aligned_cols=33  Identities=15%  Similarity=0.369  Sum_probs=29.9

Q ss_pred             cceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      +++|+|||||.+|.+-|..|.+.|+ +|+++.+.
T Consensus        13 gkrvLViGgG~va~~ka~~Ll~~GA-~VtVvap~   45 (150)
T d1kyqa1          13 DKRILLIGGGEVGLTRLYKLMPTGC-KLTLVSPD   45 (150)
T ss_dssp             TCEEEEEEESHHHHHHHHHHGGGTC-EEEEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            4669999999999999999999998 79999764

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=97.48  E-value=0.0004  Score=53.12  Aligned_cols=31  Identities=19%  Similarity=0.353  Sum_probs=26.5

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      .|+|||+|..|+-+|..+++.|  +|.||+..+
T Consensus         9 DVvVVG~G~AGl~AA~~a~~~g--~V~llEK~~   39 (305)
T d1chua2           9 DVLIIGSGAAGLSLALRLADQH--QVIVLSKGP   39 (305)
T ss_dssp             SEEEECCSHHHHHHHHHHTTTS--CEEEECSSC
T ss_pred             CEEEECccHHHHHHHHHhhcCC--CEEEEECCC
Confidence            3999999999999999988765  599998743

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.46  E-value=0.00075  Score=52.25  Aligned_cols=31  Identities=26%  Similarity=0.380  Sum_probs=26.5

Q ss_pred             eEEEEcCChhHHHHHHHHHH----cCCceEEEEEee
Q psy16200         71 TVIVLGAGDTAFDCATSALR----CGANKVLVVFRK  102 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~----~G~~~V~lv~r~  102 (183)
                      .|+|||+|..|+-+|..|++    .|. +|.|+++.
T Consensus        23 DVlIIG~G~AGl~AA~~aa~~~~~~G~-~V~vieK~   57 (356)
T d1jnra2          23 DILIIGGGFSGCGAAYEAAYWAKLGGL-KVTLVEKA   57 (356)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHHTTTTC-CEEEECSS
T ss_pred             CEEEECCCHHHHHHHHHHHHHHHhCcC-EEEEEeCC
Confidence            49999999999999988875    576 69999964

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=97.36  E-value=7.9e-06  Score=59.02  Aligned_cols=49  Identities=20%  Similarity=0.271  Sum_probs=37.3

Q ss_pred             CCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHH-HHH
Q psy16200          9 DGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDC-ATS   87 (183)
Q Consensus         9 ~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~-A~~   87 (183)
                      ++||+||+|||+. |+.+++| + .                                 +.+++|+|||+|++++++ ++.
T Consensus       124 ~~~d~vilAtG~~-~~~~~~p-g-~---------------------------------~~g~~v~vigggd~a~~~~~~~  167 (179)
T d1ps9a3         124 QAFDETILASGIP-NRALAQP-L-I---------------------------------DSGKTVHLIGGCDVAMELDARR  167 (179)
T ss_dssp             CCSSEEEECCCEE-CCTTHHH-H-H---------------------------------TTTCCEEECGGGTCCSSCCHHH
T ss_pred             ccceeEEEeecCC-Ccccccc-h-h---------------------------------ccCCEEEEECCcHhhhhccchh
Confidence            4699999999984 7766666 3 1                                 134679999999999997 667


Q ss_pred             HHHcCC
Q psy16200         88 ALRCGA   93 (183)
Q Consensus        88 l~~~G~   93 (183)
                      +.+.|.
T Consensus       168 Av~~G~  173 (179)
T d1ps9a3         168 AIAQGT  173 (179)
T ss_dssp             HHHHHH
T ss_pred             hhhccC
Confidence            777774

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.31  E-value=7.2e-05  Score=57.65  Aligned_cols=33  Identities=27%  Similarity=0.419  Sum_probs=30.1

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC  104 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~  104 (183)
                      +|+|||||.+|+-+|..|++.|. +|+|++++++
T Consensus         3 dv~IIGaG~sGl~~A~~L~~~g~-~V~iiEk~~~   35 (298)
T d1i8ta1           3 DYIIVGSGLFGAVCANELKKLNK-KVLVIEKRNH   35 (298)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGTC-CEEEECSSSS
T ss_pred             cEEEECCcHHHHHHHHHHHhCCC-cEEEEECCCC
Confidence            48999999999999999999996 7999998765

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.29  E-value=0.0001  Score=56.34  Aligned_cols=31  Identities=26%  Similarity=0.403  Sum_probs=28.8

Q ss_pred             EEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         72 VIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        72 VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      |+|||||..|+-+|..|++.|. +|+|+++++
T Consensus         2 ViVIGaG~aGL~aA~~L~~~G~-~V~VlE~~~   32 (383)
T d2v5za1           2 VVVVGGGISGMAAAKLLHDSGL-NVVVLEARD   32 (383)
T ss_dssp             EEEECCBHHHHHHHHHHHHTTC-CEEEEESSS
T ss_pred             EEEECCCHHHHHHHHHHHhCCC-CEEEEecCC
Confidence            8999999999999999999997 799999754

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.23  E-value=0.00014  Score=53.43  Aligned_cols=59  Identities=20%  Similarity=0.258  Sum_probs=40.8

Q ss_pred             eEEEEcCChhHHHHHHHHHHc--CCceEEEEEeecCCc------C-CCC--HH-----HHHHHHHcCcEEEeCCcc
Q psy16200         71 TVIVLGAGDTAFDCATSALRC--GANKVLVVFRKGCTN------I-RAV--PE-----EVQLAWEEKCEFLPFMSP  130 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~--G~~~V~lv~r~~~~~------~-~~~--~~-----~~~~~~~~gv~~~~~~~~  130 (183)
                      ||+|||+|..|+.+|.+|.+.  |. +|+++++.+...      . +..  ..     ......+.|+.++++..+
T Consensus         3 kv~iIGaGpaGl~aA~~L~~~~~~~-~V~v~e~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   77 (230)
T d1cjca2           3 QICVVGSGPAGFYTAQHLLKHHSRA-HVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFYGNVEV   77 (230)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSSC-EEEEECSSSSSCTHHHHTSCTTCGGGGGHHHHHHHHHTSTTEEEEBSCCB
T ss_pred             eEEEECccHHHHHHHHHHHhcCCCC-eEEEEeCCCCCCceehhhccccccccccchhhhhhhhhcCCeeEEeeEEe
Confidence            699999999999999999876  55 699999876421      1 111  11     122345678888877654

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=97.21  E-value=0.00013  Score=53.00  Aligned_cols=30  Identities=23%  Similarity=0.342  Sum_probs=28.2

Q ss_pred             EEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         72 VIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        72 VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      |+|||||..|+.+|..++++|. +|+||++.
T Consensus         5 vvVIG~G~aG~~aA~~a~~~G~-kV~iiE~~   34 (217)
T d1gesa1           5 YIAIGGGSGGIASINRAAMYGQ-KCALIEAK   34 (217)
T ss_dssp             EEEECCSHHHHHHHHHHHTTTC-CEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCC-EEEEEecc
Confidence            9999999999999999999997 69999974

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.20  E-value=0.00074  Score=44.31  Aligned_cols=32  Identities=28%  Similarity=0.352  Sum_probs=28.6

Q ss_pred             cceEEEEcCChhHHHHHHHHHHcCCceEEEEEe
Q psy16200         69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFR  101 (183)
Q Consensus        69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r  101 (183)
                      +++|+|||||.+|..-|+.|.+.|+ +|+++..
T Consensus        12 ~k~vlVvG~G~va~~ka~~ll~~ga-~v~v~~~   43 (113)
T d1pjqa1          12 DRDCLIVGGGDVAERKARLLLEAGA-RLTVNAL   43 (113)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTB-EEEEEES
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC-eEEEEec
Confidence            4569999999999999999999998 6999854

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.19  E-value=0.00016  Score=52.42  Aligned_cols=31  Identities=32%  Similarity=0.470  Sum_probs=28.5

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      .|+|||||..|+++|.++++.|. +|++|++.
T Consensus         5 DviVIG~GpaGl~aA~~aar~G~-kV~vIEk~   35 (223)
T d1ebda1           5 ETLVVGAGPGGYVAAIRAAQLGQ-KVTIVEKG   35 (223)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC-EEEEEecC
Confidence            39999999999999999999996 69999874

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.13  E-value=0.00021  Score=52.06  Aligned_cols=31  Identities=26%  Similarity=0.514  Sum_probs=28.8

Q ss_pred             EEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         72 VIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        72 VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      |+|||||..|+.+|.+++++|. +|+|+++++
T Consensus         8 viVIG~GpAGl~aA~~aa~~G~-kV~lie~~~   38 (233)
T d1v59a1           8 VVIIGGGPAGYVAAIKAAQLGF-NTACVEKRG   38 (233)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEEESSS
T ss_pred             EEEECCCHHHHHHHHHHHHCCC-cEEEEEecC
Confidence            9999999999999999999997 699999764

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=97.10  E-value=0.00022  Score=52.30  Aligned_cols=31  Identities=39%  Similarity=0.501  Sum_probs=28.7

Q ss_pred             EEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         72 VIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        72 VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      |+|||||..|+.+|.+|+++|. +|+||++..
T Consensus         9 viIIG~GPaGlsaA~~aa~~G~-~V~viE~~~   39 (229)
T d1ojta1           9 VVVLGGGPGGYSAAFAAADEGL-KVAIVERYK   39 (229)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEEESSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCC-eEEEEeccC
Confidence            9999999999999999999997 699999754

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.09  E-value=0.00027  Score=49.43  Aligned_cols=33  Identities=27%  Similarity=0.325  Sum_probs=30.1

Q ss_pred             cceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      .|+|+|||+|.+|.-+|..|.+.|. +|+++.|.
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~g~-~V~v~dr~   34 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDSGI-KVTVACRT   34 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTC-EEEEEESC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC-EEEEEECC
Confidence            3679999999999999999999997 79999984

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=97.08  E-value=1.4e-05  Score=58.49  Aligned_cols=71  Identities=14%  Similarity=0.124  Sum_probs=44.5

Q ss_pred             CCCEEEEccCCCCCcccCCCCCCccCC-----CceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhHHHH
Q psy16200         10 GYTAIFIGIGKPNANVIPIFQGLTEEM-----GFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTAFDC   84 (183)
Q Consensus        10 ~~davviATGa~~p~~l~i~gg~~~~~-----~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g~e~   84 (183)
                      .++.++||||+ .|..|++| + .+.-     ++.+.....      ..      .+. .....+.+|.+||+|.+|+|+
T Consensus       129 ~~~~~iiatG~-~p~ip~ip-~-~~~l~l~~~gv~~~~~~~------i~------~d~-~~~t~~~~i~~iG~g~~g~el  192 (217)
T d1gesa1         129 TADHILIATGG-RPSHPREP-A-NDNINLEAAGVKTNEKGY------IV------VDK-YQNTNIEGIYAVGDNTGAVEL  192 (217)
T ss_dssp             EEEEEEECCCE-EECCCEEE-S-CTTSCHHHHTCCBCTTSC------BC------CCT-TSBCSSTTEEECSGGGTSCCC
T ss_pred             eeeeeeeecCc-cccCCCCC-C-cCCcccccccEEEcCCcc------Ee------eCc-hhccCCCcEEEECCCccHHHH
Confidence            46899999998 48888888 4 3322     221111000      00      000 011223569999999999999


Q ss_pred             HHHHHHcCCceEE
Q psy16200         85 ATSALRCGANKVL   97 (183)
Q Consensus        85 A~~l~~~G~~~V~   97 (183)
                      |..++++|. +|+
T Consensus       193 a~~~~~~G~-~v~  204 (217)
T d1gesa1         193 TPVAVAAGR-RLS  204 (217)
T ss_dssp             HHHHHHHHH-HHH
T ss_pred             HHHHHHHHH-HHH
Confidence            999999986 563

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.03  E-value=0.00028  Score=51.13  Aligned_cols=30  Identities=30%  Similarity=0.438  Sum_probs=27.9

Q ss_pred             EEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         72 VIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        72 VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      |+|||||..|+++|.+++++|. +|+||++.
T Consensus         6 viIIG~GpaG~~aA~~aar~G~-kV~vIEk~   35 (221)
T d3grsa1           6 YLVIGGGSGGLASARRAAELGA-RAAVVESH   35 (221)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCC-EEEEEecc
Confidence            9999999999999999999996 69999864

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=97.02  E-value=0.00028  Score=50.99  Aligned_cols=30  Identities=30%  Similarity=0.461  Sum_probs=28.2

Q ss_pred             EEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         72 VIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        72 VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      |+|||||..|+.+|.+++++|. +|.++++.
T Consensus         6 viIIGgGpAGl~aA~~aar~G~-~V~viE~~   35 (229)
T d3lada1           6 VIVIGAGPGGYVAAIKSAQLGL-KTALIEKY   35 (229)
T ss_dssp             EEEECCSHHHHHHHHHHHHHTC-CEEEEECC
T ss_pred             EEEECcCHHHHHHHHHHHHCCC-eEEEEecc
Confidence            9999999999999999999996 69999974

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.94  E-value=0.0037  Score=49.45  Aligned_cols=32  Identities=25%  Similarity=0.398  Sum_probs=28.6

Q ss_pred             eEEEEcCChhHHHHHHHHHH------cCCceEEEEEeec
Q psy16200         71 TVIVLGAGDTAFDCATSALR------CGANKVLVVFRKG  103 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~------~G~~~V~lv~r~~  103 (183)
                      .|+|||||..|+-+|..|++      .|. +|.|++|..
T Consensus        34 DViIVGgGPAGlsaA~~LA~l~~~~~~Gl-~VlllEK~~   71 (380)
T d2gmha1          34 DVVIVGAGPAGLSAATRLKQLAAQHEKDL-RVCLVEKAA   71 (380)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHHHHTTCCC-CEEEECSSS
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhhhcCCC-EEEEEcCCC
Confidence            49999999999999999997      787 699999854

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=96.90  E-value=0.0004  Score=48.95  Aligned_cols=32  Identities=28%  Similarity=0.189  Sum_probs=29.5

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      ++++|||+|.+|.-+|..|++.|. +|+++.|+
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~-~V~~~~r~   33 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQ-SVLAWDID   33 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred             CEEEEECccHHHHHHHHHHHHCCC-EEEEEECC
Confidence            679999999999999999999997 79999874

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=96.76  E-value=0.00071  Score=46.79  Aligned_cols=33  Identities=24%  Similarity=0.193  Sum_probs=29.9

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC  104 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~  104 (183)
                      ||+|||+|.+|.-+|..|++.|. +|+++.|+..
T Consensus         2 kI~IiGaG~iG~~~a~~L~~~G~-~V~~~~r~~~   34 (167)
T d1ks9a2           2 KITVLGCGALGQLWLTALCKQGH-EVQGWLRVPQ   34 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCC
T ss_pred             EEEEECcCHHHHHHHHHHHHCCC-ceEEEEcCHH
Confidence            69999999999999999999997 7999998653

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.67  E-value=0.00076  Score=48.61  Aligned_cols=33  Identities=27%  Similarity=0.284  Sum_probs=30.1

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      +||+|||+|.+|..+|..++..|. +|+++.+.+
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~-~V~l~D~~~   37 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGH-TVVLVDQTE   37 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCH
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCC-cEEEEECCh
Confidence            689999999999999999999997 699998754

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=96.62  E-value=0.0013  Score=46.38  Aligned_cols=35  Identities=29%  Similarity=0.371  Sum_probs=31.3

Q ss_pred             CcceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         68 LKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        68 ~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      .+.||+|||+|..|+..+..+.++|+ +|++++.+.
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA-~V~~~D~~~   65 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGA-QVQIFDINV   65 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCH
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCC-EEEEEeCcH
Confidence            35789999999999999999999998 699998753

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=96.57  E-value=0.00077  Score=51.69  Aligned_cols=33  Identities=21%  Similarity=0.349  Sum_probs=28.8

Q ss_pred             eEEEEcCChhHHHHHHHHH-----HcCCceEEEEEeecC
Q psy16200         71 TVIVLGAGDTAFDCATSAL-----RCGANKVLVVFRKGC  104 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~-----~~G~~~V~lv~r~~~  104 (183)
                      .|+|||||.+|+-+|..|+     +.|. +|+|++|++.
T Consensus         9 DV~IvGaG~aGl~lA~~La~~~~~~~G~-~v~vlEr~~~   46 (360)
T d1pn0a1           9 DVLIVGAGPAGLMAARVLSEYVRQKPDL-KVRIIDKRST   46 (360)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHSTTC-CEEEECSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHhcccccCCC-cEEEEcCCCC
Confidence            3999999999999999996     4687 5999998764

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=96.48  E-value=0.0016  Score=46.53  Aligned_cols=34  Identities=26%  Similarity=0.406  Sum_probs=30.7

Q ss_pred             cceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      +-+|+|||+|..|+.+|..+.++|+ +|++++.+.
T Consensus        29 pa~VvViGaGvaG~~Aa~~A~~lGA-~V~v~D~~~   62 (183)
T d1l7da1          29 PARVLVFGVGVAGLQAIATAKRLGA-VVMATDVRA   62 (183)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCS
T ss_pred             CcEEEEEcCcHHHHHHHHHHHHcCC-EEEEEeccH
Confidence            4689999999999999999999998 799998653

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=96.45  E-value=0.00094  Score=47.83  Aligned_cols=33  Identities=24%  Similarity=0.158  Sum_probs=29.6

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      +||+|||+|.+|..+|..++..|. +|+++.+.+
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~G~-~V~l~D~~~   37 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASKGT-PILMKDINE   37 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTC-CEEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCC-eEEEEECCH
Confidence            679999999999999999999997 699998753

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=96.23  E-value=0.0019  Score=50.12  Aligned_cols=30  Identities=23%  Similarity=0.243  Sum_probs=28.3

Q ss_pred             EEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         72 VIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        72 VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      |+|||+|..|+-+|..|++.|. +|.|+++.
T Consensus         5 VIVVGsG~aG~v~A~rLaeaG~-~VlvLEaG   34 (367)
T d1n4wa1           5 AVVIGTGYGAAVSALRLGEAGV-QTLMLEMG   34 (367)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred             EEEeCcCHHHHHHHHHHHHCcC-eEEEEecC
Confidence            9999999999999999999996 69999984

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=96.23  E-value=0.0016  Score=47.66  Aligned_cols=32  Identities=22%  Similarity=0.348  Sum_probs=28.8

Q ss_pred             EEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         72 VIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        72 VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      |+|||+|..|+.+|.+++++|.++|.++++..
T Consensus         6 vvVIG~GpAG~~aAi~aa~~g~k~V~vie~~~   37 (240)
T d1feca1           6 LVVIGAGSGGLEAGWNAASLHKKRVAVIDLQK   37 (240)
T ss_dssp             EEEECCSHHHHHHHHHHHHHHCCCEEEEESCS
T ss_pred             EEEECCCHHHHHHHHHHHHcCCCEEEEEEEec
Confidence            99999999999999999999876799998654

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=96.22  E-value=0.0023  Score=46.33  Aligned_cols=31  Identities=26%  Similarity=0.366  Sum_probs=28.1

Q ss_pred             EEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         72 VIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        72 VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      |+|||||..|+.+|.++++.|.+.|.+++..
T Consensus         6 viIIG~GpaGl~aA~~aa~~g~k~V~iie~~   36 (238)
T d1aoga1           6 LVVIGAGSGGLEAAWNAATLYKKRVAVIDVQ   36 (238)
T ss_dssp             EEEECCSHHHHHHHHHHHHTSCCCEEEEESC
T ss_pred             EEEECCCHHHHHHHHHHHHcCCCEEEEEEee
Confidence            9999999999999999999987779898763

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.15  E-value=0.0021  Score=46.46  Aligned_cols=31  Identities=26%  Similarity=0.232  Sum_probs=26.0

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCc-----eEEEEEe
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGAN-----KVLVVFR  101 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~-----~V~lv~r  101 (183)
                      ||+|||||.+|+-+|..|++.|.+     +++++.+
T Consensus         2 kV~VIGaGi~GlstA~~L~~~G~~v~v~e~~~i~~~   37 (246)
T d1kifa1           2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDVKVYAD   37 (246)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEES
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCceEEeeeeeccc
Confidence            599999999999999999999853     4666654

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.11  E-value=0.0021  Score=49.19  Aligned_cols=34  Identities=24%  Similarity=0.350  Sum_probs=29.4

Q ss_pred             ceEEEEcCChhHHHHHHHHHHc--CCceEEEEEeecC
Q psy16200         70 GTVIVLGAGDTAFDCATSALRC--GANKVLVVFRKGC  104 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~--G~~~V~lv~r~~~  104 (183)
                      .+|+|||||..|+.+|..|+++  |. +|+++++++.
T Consensus        51 ~~~~~~g~g~~g~~~a~~~~~~~~~~-~~~~~~~~~~   86 (311)
T d2gjca1          51 SDVIIVGAGSSGLSAAYVIAKNRPDL-KVCIIESSVA   86 (311)
T ss_dssp             ESEEEECCSHHHHHHHHHHHHHCTTS-CEEEECSSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHhCCCC-eEEEEEcCCC
Confidence            4599999999999999999965  76 6999998653

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=96.10  E-value=0.0021  Score=50.03  Aligned_cols=30  Identities=20%  Similarity=0.214  Sum_probs=28.2

Q ss_pred             EEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         72 VIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        72 VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      |+|||+|..|+-+|..|++.|. +|+|+++.
T Consensus        10 vIVVGsG~aG~v~A~rLaeaG~-~VlvLEaG   39 (370)
T d3coxa1          10 ALVIGSGYGGAVAALRLTQAGI-PTQIVEMG   39 (370)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCC-eEEEEeCC
Confidence            9999999999999999999996 69999974

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=96.07  E-value=0.0038  Score=46.67  Aligned_cols=56  Identities=13%  Similarity=0.191  Sum_probs=37.7

Q ss_pred             ceEEEEcC-ChhHHHHHHHHHHcCCceEEEEEeecCCcCCCCHHHHHHHHHcCcEEEe
Q psy16200         70 GTVIVLGA-GDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLP  126 (183)
Q Consensus        70 ~~VvViGg-G~~g~e~A~~l~~~G~~~V~lv~r~~~~~~~~~~~~~~~~~~~gv~~~~  126 (183)
                      +||+|.|| |++|..++..|.+.|. +|+++.|+..................+++++.
T Consensus         4 ~KILVtGatG~iG~~l~~~L~~~G~-~V~~~~R~~~~~~~~~~~~~~~~~~~~v~~v~   60 (312)
T d1qyda_           4 SRVLIVGGTGYIGKRIVNASISLGH-PTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIE   60 (312)
T ss_dssp             CCEEEESTTSTTHHHHHHHHHHTTC-CEEEECCSCCSSCHHHHHHHHHHHTTTCEEEC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCC-EEEEEECCCcccchhHHHHHhhhccCCcEEEE
Confidence            46999996 9999999999999996 69999886432111111222334556676654

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.95  E-value=0.00036  Score=50.94  Aligned_cols=79  Identities=13%  Similarity=0.033  Sum_probs=43.5

Q ss_pred             ChhhhhhCCCCEEEEccCCCCCcccCCCCCCccCCCceehhhhHHHHhccccCCccCCCCCCCCCCCcceEEEEcCChhH
Q psy16200          2 PTLKLRKDGYTAIFIGIGKPNANVIPIFQGLTEEMGFYTSKTFLPRVATSSKKGLCGGCKKESLPILKGTVIVLGAGDTA   81 (183)
Q Consensus         2 ~~~~l~~~~~davviATGa~~p~~l~i~gg~~~~~~V~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VvViGgG~~g   81 (183)
                      +.++++.. ||+|++|||++ +..+.++ + .+...++...+++..........     ....+...+++++|+|+|+.+
T Consensus        88 ~~~~~~~~-~~~v~~atGa~-~~~~~~~-g-~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~g~~~vv~g~g~~a  158 (239)
T d1lqta2          88 QPGELSER-YDAVIYAVGAQ-SRGVPTP-G-LPFDDQSGTIPNVGGRINGSPNE-----YVVGWIKRGPTGVIGTNKKDA  158 (239)
T ss_dssp             CHHHHHHH-SSEEEECCCCC-EECCCCT-T-SCCBTTTTBCCEETTEETTCSSE-----EECTHHHHCSCSCTTHHHHHH
T ss_pred             chhhhhcc-ccceeeecCCC-ccccccc-c-ccccccccchhhhhhhhcccccc-----ccceeecCCCEEEEeCCCchH
Confidence            45677664 99999999995 6666677 3 33343333333332211100000     000000113458888999999


Q ss_pred             HHHHHHHH
Q psy16200         82 FDCATSAL   89 (183)
Q Consensus        82 ~e~A~~l~   89 (183)
                      ++++..+.
T Consensus       159 ~d~a~~~v  166 (239)
T d1lqta2         159 QDTVDTLI  166 (239)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99997654

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.94  E-value=0.0043  Score=41.44  Aligned_cols=31  Identities=19%  Similarity=0.345  Sum_probs=28.2

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      +|+|+|+|.+|..+|+.|.+.|. +|+++++.
T Consensus         2 ~IvI~G~G~~G~~la~~L~~~g~-~v~vid~d   32 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSEKGH-DIVLIDID   32 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             EEEEECCCHHHHHHHHHHHHCCC-CcceecCC
Confidence            58999999999999999999996 79999764

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=95.87  E-value=0.0022  Score=45.97  Aligned_cols=32  Identities=19%  Similarity=0.159  Sum_probs=28.7

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      +||+|||+|.+|.-+|..|++.|. +|+++.|+
T Consensus         8 ~KI~ViGaG~wGtAlA~~La~~g~-~V~l~~r~   39 (189)
T d1n1ea2           8 NKAVVFGSGAFGTALAMVLSKKCR-EVCVWHMN   39 (189)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTEE-EEEEECSC
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCC-eEEEEEec
Confidence            579999999999999999999985 79998764

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=95.84  E-value=0.0035  Score=41.81  Aligned_cols=32  Identities=25%  Similarity=0.226  Sum_probs=28.5

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      |+++|+|.|.+|..+|..|.+.|. +|++++..
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~-~vvvid~d   32 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGH-EVLAVDIN   32 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTC-CCEEEESC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCC-eEEEecCc
Confidence            468999999999999999999997 69999754

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=95.82  E-value=0.0038  Score=48.01  Aligned_cols=31  Identities=23%  Similarity=0.311  Sum_probs=28.7

Q ss_pred             EEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         72 VIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        72 VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      |+|||+|..|+-+|..|++.|. +|.|+++.+
T Consensus         7 viIVGsG~aG~v~A~~La~~G~-kVlvLEaG~   37 (379)
T d2f5va1           7 VVIVGSGPIGCTYARELVGAGY-KVAMFDIGE   37 (379)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-EEEEECSSC
T ss_pred             EEEECcCHHHHHHHHHHhhCCC-eEEEEecCC
Confidence            9999999999999999999996 799999753

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=95.80  E-value=0.0048  Score=42.89  Aligned_cols=34  Identities=38%  Similarity=0.493  Sum_probs=29.9

Q ss_pred             cceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      .++|+|||+|.+|..++..|...|.++++++.|.
T Consensus        24 ~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt   57 (159)
T d1gpja2          24 DKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRT   57 (159)
T ss_dssp             TCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSS
T ss_pred             cCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCc
Confidence            3569999999999999999999998778888764

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.64  E-value=0.0052  Score=42.61  Aligned_cols=32  Identities=25%  Similarity=0.327  Sum_probs=28.1

Q ss_pred             eEEEE-cCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         71 TVIVL-GAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        71 ~VvVi-GgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      ||+|+ |.|.+|..+|..|++.|. +|++..|++
T Consensus         2 ki~vigGaG~iG~alA~~la~~G~-~V~l~~R~~   34 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLATLGH-EIVVGSRRE   34 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTC-EEEEEESSH
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCC-EEEEEECCH
Confidence            58899 569999999999999997 699998753

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=95.63  E-value=0.0056  Score=42.74  Aligned_cols=35  Identities=26%  Similarity=0.305  Sum_probs=30.9

Q ss_pred             CcceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         68 LKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        68 ~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      ..++|+|+|+|-+|--++..|.++|+++++++.|+
T Consensus        16 ~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~   50 (167)
T d1npya1          16 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARN   50 (167)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeccc
Confidence            34679999999999999999999998889998764

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=95.55  E-value=0.008  Score=42.23  Aligned_cols=37  Identities=27%  Similarity=0.300  Sum_probs=31.6

Q ss_pred             CCcceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         67 ILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        67 ~~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      ..+++|+|+|+|.+|.-++..+..+|+++|.++.+++
T Consensus        27 ~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~   63 (182)
T d1vj0a2          27 FAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSP   63 (182)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCH
T ss_pred             CCCCEEEEECCCccchhheeccccccccccccccccc
Confidence            4567799999999999999999999987798887643

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.54  E-value=0.0062  Score=42.98  Aligned_cols=31  Identities=23%  Similarity=0.257  Sum_probs=27.9

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      ||.|||+|.+|.-+|..|++.|. +|+++.|+
T Consensus         2 kI~ViGaG~~GtalA~~la~~g~-~V~l~~r~   32 (180)
T d1txga2           2 IVSILGAGAMGSALSVPLVDNGN-EVRIWGTE   32 (180)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCC-EEEEECCG
T ss_pred             EEEEECCCHHHHHHHHHHHHCCC-EEEEEEec
Confidence            58999999999999999999986 79998763

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.36  E-value=0.012  Score=40.88  Aligned_cols=36  Identities=31%  Similarity=0.276  Sum_probs=30.9

Q ss_pred             CCcceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         67 ILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        67 ~~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      ..+++|+|+|+|.+|+-++..+..+|+++|.++.++
T Consensus        25 ~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~   60 (171)
T d1pl8a2          25 TLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLS   60 (171)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESC
T ss_pred             CCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCC
Confidence            455679999999999999999999998778888754

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=95.32  E-value=0.0083  Score=44.29  Aligned_cols=33  Identities=12%  Similarity=0.243  Sum_probs=30.5

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      .+|+|+|+|-+|..+|..|++.|.++++|+...
T Consensus        31 ~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D   63 (247)
T d1jw9b_          31 SRVLIVGLGGLGCAASQYLASAGVGNLTLLDFD   63 (247)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred             CCEEEECCCHHHHHHHHHHHHcCCCeEEEECCc
Confidence            469999999999999999999999999999853

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=95.31  E-value=0.013  Score=41.24  Aligned_cols=36  Identities=19%  Similarity=0.302  Sum_probs=31.5

Q ss_pred             CcceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         68 LKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        68 ~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      .+++|+|+|+|-+|--++..|..+|.++++++.|..
T Consensus        17 ~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~   52 (182)
T d1vi2a1          17 KGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRD   52 (182)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSS
T ss_pred             CCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccch
Confidence            345699999999999999999999998999998753

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=95.30  E-value=0.032  Score=41.02  Aligned_cols=57  Identities=28%  Similarity=0.209  Sum_probs=38.0

Q ss_pred             CcceEEEEc-CChhHHHHHHHHHHcCCceEEEEEeecCCcCCCCHHHHHHHHHcCcEEE
Q psy16200         68 LKGTVIVLG-AGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFL  125 (183)
Q Consensus        68 ~~~~VvViG-gG~~g~e~A~~l~~~G~~~V~lv~r~~~~~~~~~~~~~~~~~~~gv~~~  125 (183)
                      +.+.++|.| +|-+|..+|+.|++.|+++|.++.|+... .....+.+.++...|..+.
T Consensus         8 p~gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~~~~-~~~~~~~~~~l~~~g~~v~   65 (259)
T d2fr1a1           8 PTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPD-ADGAGELVAELEALGARTT   65 (259)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGG-STTHHHHHHHHHHTTCEEE
T ss_pred             CcCEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCccC-HHHHHHHHHHHHhcccccc
Confidence            445577777 57799999999999998778888776422 2222333445555665543

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=95.14  E-value=0.012  Score=39.93  Aligned_cols=32  Identities=13%  Similarity=0.086  Sum_probs=27.4

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEe
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFR  101 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r  101 (183)
                      +||.|||+|.+|..+|..|+..+..++.++..
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~   33 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDI   33 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcceEEEEee
Confidence            57999999999999999998887657888754

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=95.08  E-value=0.017  Score=39.69  Aligned_cols=34  Identities=12%  Similarity=0.013  Sum_probs=28.1

Q ss_pred             cceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      ..||+|||+|.+|..+|..++..+..++.++...
T Consensus         7 ~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~   40 (154)
T d1pzga1           7 RKKVAMIGSGMIGGTMGYLCALRELADVVLYDVV   40 (154)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCceEEEEEec
Confidence            3569999999999999998888886578888643

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=94.97  E-value=0.013  Score=39.97  Aligned_cols=32  Identities=16%  Similarity=0.286  Sum_probs=26.9

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcC-CceEEEEEe
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCG-ANKVLVVFR  101 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G-~~~V~lv~r  101 (183)
                      +||+|||+|.+|..+|..|..+| +.++.|+..
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di   34 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDA   34 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECS
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEec
Confidence            67999999999999999988877 346877754

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.93  E-value=0.02  Score=39.57  Aligned_cols=36  Identities=19%  Similarity=0.092  Sum_probs=30.5

Q ss_pred             CCCcceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         66 PILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        66 ~~~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      ...+++|+|+|+|.+|.-++..+..+|+ +|..+.++
T Consensus        25 ~~~g~~vlI~GaG~vG~~a~q~ak~~G~-~vi~~~~~   60 (168)
T d1piwa2          25 CGPGKKVGIVGLGGIGSMGTLISKAMGA-ETYVISRS   60 (168)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESS
T ss_pred             cCCCCEEEEECCCCcchhHHHHhhhccc-cccccccc
Confidence            3456789999999999999999889998 58888765

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=94.93  E-value=0.015  Score=39.78  Aligned_cols=33  Identities=21%  Similarity=0.298  Sum_probs=28.3

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcC-CceEEEEEee
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCG-ANKVLVVFRK  102 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G-~~~V~lv~r~  102 (183)
                      .||+|||+|.+|..+|..|+..| +.++.|+.+.
T Consensus         6 ~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~   39 (146)
T d1ez4a1           6 QKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVV   39 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecc
Confidence            57999999999999999999887 3579998753

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=94.81  E-value=0.024  Score=41.62  Aligned_cols=34  Identities=21%  Similarity=0.434  Sum_probs=30.0

Q ss_pred             ceEEEEcC-ChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200         70 GTVIVLGA-GDTAFDCATSALRCGANKVLVVFRKGC  104 (183)
Q Consensus        70 ~~VvViGg-G~~g~e~A~~l~~~G~~~V~lv~r~~~  104 (183)
                      +||+|.|| |++|..++..|.+.|. +|+.+.|++.
T Consensus         4 kKILVtGatG~iG~~l~~~L~~~G~-~V~~l~R~~~   38 (307)
T d1qyca_           4 SRILLIGATGYIGRHVAKASLDLGH-PTFLLVREST   38 (307)
T ss_dssp             CCEEEESTTSTTHHHHHHHHHHTTC-CEEEECCCCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC-eEEEEECCCc
Confidence            67999996 9999999999999997 6999998753

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=94.77  E-value=0.017  Score=40.23  Aligned_cols=34  Identities=18%  Similarity=0.226  Sum_probs=29.7

Q ss_pred             CcceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         68 LKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        68 ~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      .+++|+|+|+|-+|--++..|.+.|+ +++++.|.
T Consensus        17 ~~k~vlIlGaGGaarai~~al~~~g~-~i~I~nRt   50 (170)
T d1nyta1          17 PGLRILLIGAGGASRGVLLPLLSLDC-AVTITNRT   50 (170)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             CCCEEEEECCcHHHHHHHHHhcccce-EEEeccch
Confidence            45679999999999999999999998 59988764

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.67  E-value=0.02  Score=40.61  Aligned_cols=34  Identities=24%  Similarity=0.492  Sum_probs=30.0

Q ss_pred             ceEEEEc-CChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200         70 GTVIVLG-AGDTAFDCATSALRCGANKVLVVFRKGC  104 (183)
Q Consensus        70 ~~VvViG-gG~~g~e~A~~l~~~G~~~V~lv~r~~~  104 (183)
                      +||+|+| .|.+|..++..|.+.|. +|+++.|++.
T Consensus         4 kkIlV~GatG~iG~~v~~~Ll~~g~-~V~~~~R~~~   38 (205)
T d1hdoa_           4 KKIAIFGATGQTGLTTLAQAVQAGY-EVTVLVRDSS   38 (205)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCGG
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcC-EEEEEEcChh
Confidence            6799999 59999999999999997 7999998653

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=94.65  E-value=0.018  Score=39.63  Aligned_cols=31  Identities=26%  Similarity=0.230  Sum_probs=27.7

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      ||.|||.|.+|.-+|..|.+.|. +|+.+.|+
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~-~V~~~d~~   32 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQ   32 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred             EEEEEeecHHHHHHHHHHHHCCC-EEEEEECC
Confidence            58999999999999999999996 79988764

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=94.57  E-value=0.024  Score=38.86  Aligned_cols=33  Identities=15%  Similarity=0.140  Sum_probs=28.6

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      .||.|||+|.+|..+|..|...+..++.|+.+.
T Consensus         4 ~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~   36 (150)
T d1t2da1           4 AKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIV   36 (150)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCeEEEEecc
Confidence            579999999999999999988887788888653

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.57  E-value=0.019  Score=39.95  Aligned_cols=35  Identities=29%  Similarity=0.420  Sum_probs=30.6

Q ss_pred             CCcceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         67 ILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        67 ~~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      ..+|+|+|+|-|.+|-.+|..|..+|+ +|.+.+..
T Consensus        22 l~Gk~v~V~GyG~iG~g~A~~~rg~G~-~V~v~e~d   56 (163)
T d1li4a1          22 IAGKVAVVAGYGDVGKGCAQALRGFGA-RVIITEID   56 (163)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred             ecCCEEEEeccccccHHHHHHHHhCCC-eeEeeecc
Confidence            355669999999999999999999998 69998764

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=94.55  E-value=0.014  Score=45.38  Aligned_cols=30  Identities=33%  Similarity=0.442  Sum_probs=28.0

Q ss_pred             EEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         72 VIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        72 VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      ++|||+|..|+-+|..|++.|. +|.|+++.
T Consensus         5 ~IIVGsG~aG~v~A~rLae~g~-~VlvLEaG   34 (360)
T d1kdga1           5 YIIVGAGPGGIIAADRLSEAGK-KVLLLERG   34 (360)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred             EEEECcCHHHHHHHHHHhhCCC-eEEEEEcc
Confidence            8999999999999999999986 79999985

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=94.54  E-value=0.023  Score=40.12  Aligned_cols=36  Identities=28%  Similarity=0.295  Sum_probs=29.9

Q ss_pred             CCc-ceEEEEc-CChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         67 ILK-GTVIVLG-AGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        67 ~~~-~~VvViG-gG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      ++. |+|+|.| +|.+|..+|..|+++|+ +|+++.|+.
T Consensus        20 ~l~gK~vlItGasgGIG~~ia~~la~~G~-~V~~~~r~~   57 (191)
T d1luaa1          20 SVKGKKAVVLAGTGPVGMRSAALLAGEGA-EVVLCGRKL   57 (191)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHhhcc-chhhcccch
Confidence            344 4588888 69999999999999998 699998863

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.53  E-value=0.021  Score=38.97  Aligned_cols=33  Identities=21%  Similarity=0.373  Sum_probs=27.6

Q ss_pred             cceEEEEcCChhHHHHHHHHHHcC-CceEEEEEe
Q psy16200         69 KGTVIVLGAGDTAFDCATSALRCG-ANKVLVVFR  101 (183)
Q Consensus        69 ~~~VvViGgG~~g~e~A~~l~~~G-~~~V~lv~r  101 (183)
                      +.||.|||+|.+|..+|..|+..+ +.++.|+.+
T Consensus         6 ~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di   39 (148)
T d1ldna1           6 GARVVVIGAGFVGASYVFALMNQGIADEIVLIDA   39 (148)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECS
T ss_pred             CCeEEEECcCHHHHHHHHHHHhcCCCceEEEEee
Confidence            467999999999999999998876 346888864

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=94.53  E-value=0.023  Score=38.63  Aligned_cols=33  Identities=21%  Similarity=0.245  Sum_probs=27.2

Q ss_pred             cceEEEEcCChhHHHHHHHHHHcCC-ceEEEEEe
Q psy16200         69 KGTVIVLGAGDTAFDCATSALRCGA-NKVLVVFR  101 (183)
Q Consensus        69 ~~~VvViGgG~~g~e~A~~l~~~G~-~~V~lv~r  101 (183)
                      |.||+|||+|.+|..+|..++..|. .++.|+..
T Consensus         1 p~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~   34 (143)
T d1llda1           1 PTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDI   34 (143)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEe
Confidence            4679999999999999999887763 46888754

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=94.46  E-value=0.031  Score=38.43  Aligned_cols=36  Identities=33%  Similarity=0.367  Sum_probs=30.6

Q ss_pred             CCCcceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         66 PILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        66 ~~~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      ...+++|+|+|+|.+|+-++..+..+|+ +|.++.++
T Consensus        24 ~~~g~~vlV~G~G~vG~~~~~~ak~~Ga-~vi~v~~~   59 (170)
T d1e3ja2          24 VQLGTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTARS   59 (170)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCCEEEEEcccccchhhHhhHhhhcc-cccccchH
Confidence            3456779999999999999999999998 69888764

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=94.42  E-value=0.028  Score=39.28  Aligned_cols=37  Identities=16%  Similarity=0.228  Sum_probs=31.0

Q ss_pred             CCCcceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         66 PILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        66 ~~~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      ...+++|+|+|+|.+|+-++..+...|++.|.++.++
T Consensus        26 v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~   62 (174)
T d1e3ia2          26 VTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDIN   62 (174)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSC
T ss_pred             CCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccc
Confidence            4456779999999999999999999998767777654

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=94.36  E-value=0.074  Score=37.68  Aligned_cols=54  Identities=28%  Similarity=0.167  Sum_probs=38.1

Q ss_pred             CCCcceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCCcCCCCHHHHHHHHHcCcEEEeC
Q psy16200         66 PILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPF  127 (183)
Q Consensus        66 ~~~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~~~~~~~~~~~~~~~~gv~~~~~  127 (183)
                      ...++.|+|+|+|.+|+-++..+..+|+++|.++.+++        ...+.+.+.|.....+
T Consensus        23 v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~--------~rl~~a~~~Ga~~~~~   76 (195)
T d1kola2          23 VGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNP--------ARLAHAKAQGFEIADL   76 (195)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH--------HHHHHHHHTTCEEEET
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccc--------hhhHhhhhccccEEEe
Confidence            34567799999999999999888888987777776532        2334456666555443

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=94.35  E-value=0.018  Score=45.33  Aligned_cols=32  Identities=28%  Similarity=0.246  Sum_probs=28.7

Q ss_pred             EEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         72 VIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        72 VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      ++|||+|..|+-+|..|++.|..+|.|+++.+
T Consensus        27 ~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~   58 (391)
T d1gpea1          27 YIIAGGGLTGLTVAAKLTENPKIKVLVIEKGF   58 (391)
T ss_dssp             EEEECCSHHHHHHHHHHHTSTTCCEEEEESSC
T ss_pred             EEEECcCHHHHHHHHHHHHCCCCeEEEEcCCC
Confidence            99999999999999999998844799999864

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.28  E-value=0.046  Score=35.38  Aligned_cols=33  Identities=30%  Similarity=0.469  Sum_probs=29.4

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      .||.|+|||..|..+|..+.++|. +|.++.+..
T Consensus        12 ~kigIlGgGQL~rMla~aA~~lG~-~v~v~d~~~   44 (111)
T d1kjqa2          12 TRVMLLGSGELGKEVAIECQRLGV-EVIAVDRYA   44 (111)
T ss_dssp             CEEEEESCSHHHHHHHHHHHTTTC-EEEEEESST
T ss_pred             CEEEEEeCCHHHHHHHHHHHHCCC-EEEEEcCCC
Confidence            469999999999999999999998 699988653

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.24  E-value=0.075  Score=37.11  Aligned_cols=49  Identities=14%  Similarity=-0.029  Sum_probs=36.4

Q ss_pred             HHHHcCcEEEeCCcceEEEc--cCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEccccccc
Q psy16200        116 LAWEEKCEFLPFMSPVQVDV--KDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGSTLL  180 (183)
Q Consensus       116 ~~~~~gv~~~~~~~~~~i~~--~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~~p~  180 (183)
                      .+.+.|++|++++.+.+|..  +++++++++.              +|  .++.||.||..-.+.|+
T Consensus       245 ~~~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~--------------~g--~~~~ad~VI~~~s~~~~  295 (297)
T d2bcgg1         245 LSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKT--------------KL--GTFKAPLVIADPTYFPE  295 (297)
T ss_dssp             HHHHTTCEEECSCCCCEEEEETTTTEEEEEEE--------------TT--EEEECSCEEECGGGCGG
T ss_pred             HHHhcCCEEEeCCEeeEEEEECCCCEEEEEEc--------------CC--EEEECCEEEEChhhccC
Confidence            34678999999999999864  3455664432              23  37899999998888776

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=94.15  E-value=0.027  Score=39.32  Aligned_cols=37  Identities=22%  Similarity=0.291  Sum_probs=30.9

Q ss_pred             CCCcceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         66 PILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        66 ~~~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      ...+++|+|+|+|.+|+-++..+..+|+++|..+.++
T Consensus        25 ~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~   61 (174)
T d1jqba2          25 IEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSR   61 (174)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCC
T ss_pred             CCCCCEEEEEcCCcchhhhhhhhhcccccccccccch
Confidence            3456679999999999999999999998778887654

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=94.15  E-value=0.03  Score=37.90  Aligned_cols=33  Identities=18%  Similarity=0.184  Sum_probs=27.8

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCC-ceEEEEEee
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGA-NKVLVVFRK  102 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~-~~V~lv~r~  102 (183)
                      +||+|||+|.+|..+|..+...+. .++.|+.+.
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~   35 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVF   35 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEecc
Confidence            469999999999999999888763 469998765

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.13  E-value=0.025  Score=40.39  Aligned_cols=30  Identities=23%  Similarity=0.272  Sum_probs=27.2

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEe
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFR  101 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r  101 (183)
                      ||.|||.|++|+-+|..|++.|. +|+.++.
T Consensus         2 kI~ViGlG~vGl~~a~~la~~g~-~V~g~D~   31 (202)
T d1mv8a2           2 RISIFGLGYVGAVCAGCLSARGH-EVIGVDV   31 (202)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTC-EEEEECS
T ss_pred             EEEEECCCHhHHHHHHHHHhCCC-cEEEEeC
Confidence            58999999999999999999996 7998875

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=94.11  E-value=0.034  Score=38.57  Aligned_cols=36  Identities=22%  Similarity=0.342  Sum_probs=28.9

Q ss_pred             CCCcceEEEEcCChhHHHHHHHHHHcCCceEEEEEe
Q psy16200         66 PILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFR  101 (183)
Q Consensus        66 ~~~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r  101 (183)
                      ...+++|+|+|+|.+|+-++..+..+|++.|.++.+
T Consensus        26 ~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~   61 (174)
T d1f8fa2          26 VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDI   61 (174)
T ss_dssp             CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEES
T ss_pred             CCCCCEEEEeCCCHHHhhhhhcccccccceeeeecc
Confidence            445677999999999999999999999865555543

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=94.03  E-value=0.072  Score=36.93  Aligned_cols=37  Identities=22%  Similarity=0.308  Sum_probs=31.0

Q ss_pred             CCCcceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         66 PILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        66 ~~~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      ...+++|+|+|+|.+|+-++..+...|+++|..+.++
T Consensus        25 ~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~   61 (174)
T d1p0fa2          25 VTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTH   61 (174)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSC
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCCh
Confidence            4456779999999999999999999998778777654

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=93.99  E-value=0.048  Score=36.87  Aligned_cols=53  Identities=15%  Similarity=0.132  Sum_probs=36.3

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCCcCCCCHHHHHHHHHcCcEEEeC
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPF  127 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~~~~~~~~~~~~~~~~gv~~~~~  127 (183)
                      ++++|+|.|..|..++..|.+.|. +|+++...+.    .....+..+...|+.++.+
T Consensus         4 nHiII~G~g~~g~~l~~~L~~~~~-~v~vId~d~~----~~~~~~~~~~~~~~~vi~G   56 (153)
T d1id1a_           4 DHFIVCGHSILAINTILQLNQRGQ-NVTVISNLPE----DDIKQLEQRLGDNADVIPG   56 (153)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTC-CEEEEECCCH----HHHHHHHHHHCTTCEEEES
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCC-CEEEEeccch----hHHHHHHHhhcCCcEEEEc
Confidence            359999999999999999999986 6999875321    0111223334456666554

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.95  E-value=0.04  Score=37.67  Aligned_cols=36  Identities=17%  Similarity=0.046  Sum_probs=30.2

Q ss_pred             CCCcceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         66 PILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        66 ~~~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      ...+++|+|+|+|.+|+-++..+..+|+ +|..+.++
T Consensus        25 ~~~g~~VlV~GaG~vG~~~~~~ak~~G~-~Vi~~~~~   60 (166)
T d1llua2          25 ARPGQWVAISGIGGLGHVAVQYARAMGL-HVAAIDID   60 (166)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCCEEEEeeccccHHHHHHHHHHcCC-ccceecch
Confidence            3456779999999999999999999997 68888764

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=93.93  E-value=0.091  Score=32.53  Aligned_cols=55  Identities=13%  Similarity=0.055  Sum_probs=40.1

Q ss_pred             eEEEEcCChhHHH-HHHHHHHcCCceEEEEEeecCCcCCCCHHHHHHHHHcCcEEEeCCcceEE
Q psy16200         71 TVIVLGAGDTAFD-CATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFMSPVQV  133 (183)
Q Consensus        71 ~VvViGgG~~g~e-~A~~l~~~G~~~V~lv~r~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i  133 (183)
                      ||=+||-|-+||. +|+.|.++|. +|+--.+.       ..+..+.+++.|+++..+.....+
T Consensus         3 ~ihfiGIgG~GMs~LA~~L~~~G~-~VsGSD~~-------~~~~t~~L~~~Gi~i~~gh~~~~i   58 (89)
T d1j6ua1           3 KIHFVGIGGIGMSAVALHEFSNGN-DVYGSNIE-------ETERTAYLRKLGIPIFVPHSADNW   58 (89)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-EEEEECSS-------CCHHHHHHHHTTCCEESSCCTTSC
T ss_pred             EEEEEeECHHHHHHHHHHHHhCCC-eEEEEeCC-------CChhHHHHHHCCCeEEeeeccccc
Confidence            5778898888885 7999999997 68876532       123456788999999877655433

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=93.82  E-value=0.031  Score=38.85  Aligned_cols=37  Identities=30%  Similarity=0.371  Sum_probs=31.9

Q ss_pred             CCCcceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         66 PILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        66 ~~~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      ...+|+++|+|=|++|--+|..|..+|+ +|++++..+
T Consensus        20 ~laGk~vvV~GYG~vGrG~A~~~rg~Ga-~V~V~E~DP   56 (163)
T d1v8ba1          20 LISGKIVVICGYGDVGKGCASSMKGLGA-RVYITEIDP   56 (163)
T ss_dssp             CCTTSEEEEECCSHHHHHHHHHHHHHTC-EEEEECSCH
T ss_pred             eecCCEEEEecccccchhHHHHHHhCCC-EEEEEecCc
Confidence            3455679999999999999999999998 699998654

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=93.82  E-value=0.082  Score=36.72  Aligned_cols=37  Identities=16%  Similarity=0.266  Sum_probs=31.3

Q ss_pred             CCCcceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         66 PILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        66 ~~~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      ...++.|+|+|+|-+|+-++..+..+|+++|..+.++
T Consensus        27 ~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~   63 (176)
T d1d1ta2          27 VKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLN   63 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSC
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCc
Confidence            3455669999999999999999999998788888764

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.76  E-value=0.023  Score=45.59  Aligned_cols=34  Identities=21%  Similarity=0.277  Sum_probs=30.9

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      .||+|||+|-+|+++|..|+..|..+++|+....
T Consensus        38 ~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D~   71 (426)
T d1yovb1          38 CKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDT   71 (426)
T ss_dssp             CCEEEECSSTTHHHHHHHHHTTTCCCEEEECCCB
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence            4699999999999999999999998999998743

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=93.70  E-value=0.053  Score=37.23  Aligned_cols=36  Identities=22%  Similarity=0.104  Sum_probs=29.3

Q ss_pred             CCCcceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         66 PILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        66 ~~~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      ...+++|+|+|+|.+|+-++..+..+|+ +|.++.++
T Consensus        28 ~~~G~~VlI~GaG~vG~~a~qlak~~Ga-~~i~~~~~   63 (168)
T d1uufa2          28 AGPGKKVGVVGIGGLGHMGIKLAHAMGA-HVVAFTTS   63 (168)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             CCCCCEEEEeccchHHHHHHHHhhcccc-cchhhccc
Confidence            3456789999999999999999999998 46666654

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=93.68  E-value=0.027  Score=38.08  Aligned_cols=33  Identities=15%  Similarity=0.185  Sum_probs=29.5

Q ss_pred             ceEEEEc-CChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         70 GTVIVLG-AGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        70 ~~VvViG-gG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      +||.||| .|.+|.-+|..|.+.|. +|+++.|+.
T Consensus        10 ~kI~iIGg~G~mG~~la~~L~~~G~-~V~~~d~~~   43 (152)
T d2pv7a2          10 HKIVIVGGYGKLGGLFARYLRASGY-PISILDRED   43 (152)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTTTC-CEEEECTTC
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHcCC-CcEeccccc
Confidence            6799999 59999999999999997 699998753

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=93.68  E-value=0.036  Score=41.00  Aligned_cols=48  Identities=13%  Similarity=0.205  Sum_probs=35.7

Q ss_pred             HHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccc
Q psy16200        118 WEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGS  177 (183)
Q Consensus       118 ~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~  177 (183)
                      .+.|+.+++++.+++|..++++++ +.+.           ..+++.++++||.||+|++.
T Consensus       246 ~~~g~~i~~~~~V~~I~~~~~~v~-v~~~-----------~~~~~~~~~~aD~VI~A~p~  293 (370)
T d2iida1         246 RDIQDKVHFNAQVIKIQQNDQKVT-VVYE-----------TLSKETPSVTADYVIVCTTS  293 (370)
T ss_dssp             HHTGGGEESSCEEEEEEECSSCEE-EEEE-----------CSSSCCCEEEESEEEECSCH
T ss_pred             HhcCCccccCceEEEEEEeCCeEE-EEEE-----------ecCCCeEEEEeeEEEecCCH
Confidence            456899999999999987666665 4442           13455568899999999864

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=93.58  E-value=0.027  Score=34.26  Aligned_cols=32  Identities=25%  Similarity=0.132  Sum_probs=28.5

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      |+|.|+|||..|.-++....++|. +|+++...
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~-~v~vldp~   33 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGI-AVWPVGLD   33 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTE-EEEEECTT
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCC-EEEEEcCC
Confidence            469999999999999999999998 69998754

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=93.30  E-value=0.03  Score=43.76  Aligned_cols=33  Identities=24%  Similarity=0.228  Sum_probs=28.6

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      .++|||+|..|+-+|..|++.+..+|.|+++.+
T Consensus        19 D~IIVGsG~aG~vlA~rLse~~~~~VLvLEaG~   51 (385)
T d1cf3a1          19 DYIIAGGGLTGLTTAARLTENPNISVLVIESGS   51 (385)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSTTCCEEEEESSC
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCCeEEEECCCC
Confidence            399999999999999999987744799999854

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.20  E-value=0.21  Score=33.72  Aligned_cols=34  Identities=21%  Similarity=0.101  Sum_probs=28.6

Q ss_pred             CCcceEEEEcCChhHHHHHHHHHHcCCceEEEEEe
Q psy16200         67 ILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFR  101 (183)
Q Consensus        67 ~~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r  101 (183)
                      ..+++|+|.|+|.+|+-++..+...|+ +|.++.+
T Consensus        26 ~~g~~vlv~G~G~iG~~a~~~a~~~g~-~v~~~~~   59 (168)
T d1rjwa2          26 KPGEWVAIYGIGGLGHVAVQYAKAMGL-NVVAVDI   59 (168)
T ss_dssp             CTTCEEEEECCSTTHHHHHHHHHHTTC-EEEEECS
T ss_pred             CCCCEEEEeecccchhhhhHHHhcCCC-eEeccCC
Confidence            456779999999999999999989998 6877754

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=93.16  E-value=0.013  Score=42.15  Aligned_cols=34  Identities=12%  Similarity=0.029  Sum_probs=23.2

Q ss_pred             ChhhhhhCCCCEEEEccCCCCCcccCCCCCCccCCCc
Q psy16200          2 PTLKLRKDGYTAIFIGIGKPNANVIPIFQGLTEEMGF   38 (183)
Q Consensus         2 ~~~~l~~~~~davviATGa~~p~~l~i~gg~~~~~~V   38 (183)
                      +.++|++. ||+|+||||+..++.++++ + ....++
T Consensus        82 ~~~~l~~~-~d~v~~a~Ga~~~~~~~~~-~-~~~~~~  115 (230)
T d1cjca2          82 TVQELQDA-YHAVVLSYGAEDKSRPIDP-S-VPFDPK  115 (230)
T ss_dssp             CHHHHHHH-SSEEEECCCCCEECCCCCT-T-SCCBTT
T ss_pred             cHHHHHhh-hceEEEEeecccccccccc-c-cccccc
Confidence            56677765 9999999999644555666 3 444433

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=93.01  E-value=0.066  Score=39.83  Aligned_cols=34  Identities=18%  Similarity=0.250  Sum_probs=26.8

Q ss_pred             CcceEEEE-c-CChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         68 LKGTVIVL-G-AGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        68 ~~~~VvVi-G-gG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      +.+|+++| | ++-+|..+|..|++.|+ +|.++.|+
T Consensus         3 L~gK~alVTGas~GIG~aia~~la~~Ga-~V~l~~r~   38 (272)
T d1xkqa_           3 FSNKTVIITGSSNGIGRTTAILFAQEGA-NVTITGRS   38 (272)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCEEEEeCcCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence            44665555 5 56699999999999998 69999875

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.96  E-value=0.08  Score=38.64  Aligned_cols=38  Identities=26%  Similarity=0.284  Sum_probs=28.9

Q ss_pred             CCCcce-EEEEc-CChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200         66 PILKGT-VIVLG-AGDTAFDCATSALRCGANKVLVVFRKGC  104 (183)
Q Consensus        66 ~~~~~~-VvViG-gG~~g~e~A~~l~~~G~~~V~lv~r~~~  104 (183)
                      +.+.+| ++|-| ++-+|..+|+.|++.|+ +|.++.|+..
T Consensus         3 psl~gK~~lITGas~GIG~aia~~la~~Ga-~V~~~~r~~~   42 (237)
T d1uzma1           3 PPFVSRSVLVTGGNRGIGLAIAQRLAADGH-KVAVTHRGSG   42 (237)
T ss_dssp             CCCCCCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSSC
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCcc
Confidence            345566 55555 45699999999999998 6999998653

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=92.89  E-value=0.064  Score=36.01  Aligned_cols=32  Identities=19%  Similarity=0.225  Sum_probs=26.9

Q ss_pred             eEEEEcCChhHHHHHHHHHHcC-CceEEEEEee
Q psy16200         71 TVIVLGAGDTAFDCATSALRCG-ANKVLVVFRK  102 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G-~~~V~lv~r~  102 (183)
                      ||+|||+|.+|..+|..|+..+ +.++.|+...
T Consensus         2 KI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~   34 (142)
T d1guza1           2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVV   34 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCceEEEeccc
Confidence            6999999999999999998877 3478888654

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=92.82  E-value=0.095  Score=36.12  Aligned_cols=33  Identities=27%  Similarity=0.460  Sum_probs=27.6

Q ss_pred             cceEEEEcCChhHHHHHHHHHHcC-CceEEEEEe
Q psy16200         69 KGTVIVLGAGDTAFDCATSALRCG-ANKVLVVFR  101 (183)
Q Consensus        69 ~~~VvViGgG~~g~e~A~~l~~~G-~~~V~lv~r  101 (183)
                      ..||.|||+|.+|..+|..|+..| +.++.|+.+
T Consensus        20 ~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~   53 (160)
T d1i0za1          20 NNKITVVGVGQVGMACAISILGKSLADELALVDV   53 (160)
T ss_dssp             SSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEe
Confidence            357999999999999999999887 356888764

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=92.81  E-value=0.078  Score=39.62  Aligned_cols=36  Identities=22%  Similarity=0.263  Sum_probs=28.2

Q ss_pred             CCcceEEEE-c-CChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         67 ILKGTVIVL-G-AGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        67 ~~~~~VvVi-G-gG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      .+.+|++|| | ++-+|..+|+.|++.|+ +|.++.|+.
T Consensus        22 ~l~gK~alITGas~GIG~aiA~~la~~Ga-~Vii~~r~~   59 (294)
T d1w6ua_          22 SFQGKVAFITGGGTGLGKGMTTLLSSLGA-QCVIASRKM   59 (294)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCH
Confidence            355675544 4 67899999999999998 699998763

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.75  E-value=0.075  Score=38.69  Aligned_cols=35  Identities=23%  Similarity=0.303  Sum_probs=27.3

Q ss_pred             CcceEE-EEc-CChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         68 LKGTVI-VLG-AGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        68 ~~~~Vv-ViG-gG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      +.+||+ |-| ++-+|..+|..|++.|+ +|.++.|+.
T Consensus         3 lkGKvalITGas~GIG~aia~~la~~G~-~V~~~~r~~   39 (248)
T d2o23a1           3 VKGLVAVITGGASGLGLATAERLVGQGA-SAVLLDLPN   39 (248)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECTT
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCh
Confidence            446654 555 55699999999999998 699999864

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=92.73  E-value=0.3  Score=30.42  Aligned_cols=57  Identities=11%  Similarity=-0.038  Sum_probs=42.6

Q ss_pred             CcceEEEEcCChhHHHH-HHHHHHcCCceEEEEEeecCCcCCCCHHHHHHHHHcCcEEEeCCcceE
Q psy16200         68 LKGTVIVLGAGDTAFDC-ATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPFMSPVQ  132 (183)
Q Consensus        68 ~~~~VvViGgG~~g~e~-A~~l~~~G~~~V~lv~r~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~  132 (183)
                      -.+++-+||-|-+||.. |++|..+|. +|+-..+..       ....+.+.+.|+.+..+.....
T Consensus         7 ~~~~ihfiGigG~GMs~LA~~L~~~G~-~VsGSD~~~-------~~~~~~L~~~Gi~v~~g~~~~~   64 (96)
T d1p3da1           7 RVQQIHFIGIGGAGMSGIAEILLNEGY-QISGSDIAD-------GVVTQRLAQAGAKIYIGHAEEH   64 (96)
T ss_dssp             TCCEEEEETTTSTTHHHHHHHHHHHTC-EEEEEESCC-------SHHHHHHHHTTCEEEESCCGGG
T ss_pred             hCCEEEEEEECHHHHHHHHHHHHhCCC-EEEEEeCCC-------ChhhhHHHHCCCeEEECCcccc
Confidence            34679999999899875 999999997 688875431       2344567788999887766543

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=92.67  E-value=0.075  Score=37.32  Aligned_cols=35  Identities=26%  Similarity=0.199  Sum_probs=30.7

Q ss_pred             cceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200         69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGC  104 (183)
Q Consensus        69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~  104 (183)
                      +++|.|||.|.+|..+|..+..+|+ +|..+.|...
T Consensus        42 gk~vgIiG~G~IG~~va~~l~~~g~-~v~~~d~~~~   76 (181)
T d1qp8a1          42 GEKVAVLGLGEIGTRVGKILAALGA-QVRGFSRTPK   76 (181)
T ss_dssp             TCEEEEESCSTHHHHHHHHHHHTTC-EEEEECSSCC
T ss_pred             CceEEEeccccccccceeeeecccc-cccccccccc
Confidence            4569999999999999999999998 6999887654

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=92.65  E-value=0.086  Score=39.20  Aligned_cols=35  Identities=26%  Similarity=0.335  Sum_probs=28.3

Q ss_pred             CCcce-EEEEcCC---hhHHHHHHHHHHcCCceEEEEEee
Q psy16200         67 ILKGT-VIVLGAG---DTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        67 ~~~~~-VvViGgG---~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      ++.+| ++|-|++   -+|..+|+.|++.|+ +|.+..|.
T Consensus         5 ~L~gK~alVTGass~~GIG~aiA~~la~~Ga-~Vvi~~~~   43 (297)
T d1d7oa_           5 DLRGKRAFIAGIADDNGYGWAVAKSLAAAGA-EILVGTWV   43 (297)
T ss_dssp             CCTTCEEEEECCSSSSSHHHHHHHHHHHTTC-EEEEEEEH
T ss_pred             CCCCCEEEEECCCCCchHHHHHHHHHHHCCC-EEEEEeCc
Confidence            45555 7777875   599999999999998 69888875

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=92.58  E-value=0.076  Score=35.95  Aligned_cols=32  Identities=19%  Similarity=0.267  Sum_probs=27.3

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHcC-CceEEEEEee
Q psy16200         71 TVIVLGA-GDTAFDCATSALRCG-ANKVLVVFRK  102 (183)
Q Consensus        71 ~VvViGg-G~~g~e~A~~l~~~G-~~~V~lv~r~  102 (183)
                      ||.|||+ |.+|..+|..|+..+ +.++.|+.+.
T Consensus         2 KV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~   35 (145)
T d1hyea1           2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGRE   35 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECG
T ss_pred             EEEEECCCChHHHHHHHHHHhCCcccccccccch
Confidence            5999995 999999999999887 4578888764

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=92.57  E-value=0.08  Score=36.40  Aligned_cols=35  Identities=11%  Similarity=0.037  Sum_probs=28.4

Q ss_pred             CCcceEEEEcCChhHHHHHHHHHHcCCceEEEEEe
Q psy16200         67 ILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFR  101 (183)
Q Consensus        67 ~~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r  101 (183)
                      ..++.|+|+|+|.+|.-++..+..+|+++|..+.+
T Consensus        31 ~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~   65 (172)
T d1h2ba2          31 YPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDV   65 (172)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEES
T ss_pred             CCCCEEEEeCCChHHHHHHHHHHhhcCcccccccc
Confidence            34566999999999999999998899866666654

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=92.49  E-value=0.073  Score=39.19  Aligned_cols=32  Identities=16%  Similarity=0.121  Sum_probs=25.9

Q ss_pred             ceEEEE-c-CChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         70 GTVIVL-G-AGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        70 ~~VvVi-G-gG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      |||++| | ++-+|..+|..|++.|+ +|.+..|+
T Consensus         1 KKValITGas~GIG~aia~~la~~Ga-~V~~~~r~   34 (255)
T d1gega_           1 KKVALVTGAGQGIGKAIALRLVKDGF-AVAIADYN   34 (255)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCEEEEcCCccHHHHHHHHHHHHCCC-EEEEEECC
Confidence            566555 5 45699999999999998 69999875

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=92.48  E-value=0.084  Score=38.85  Aligned_cols=35  Identities=29%  Similarity=0.345  Sum_probs=26.5

Q ss_pred             CcceE-EEEc-CChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         68 LKGTV-IVLG-AGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        68 ~~~~V-vViG-gG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      +.+|+ +|.| ++-+|.++|..|++.|+ +|.+..++.
T Consensus         4 L~GK~alITGas~GIG~aia~~la~~G~-~Vvi~~~~~   40 (259)
T d1ja9a_           4 LAGKVALTTGAGRGIGRGIAIELGRRGA-SVVVNYGSS   40 (259)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEcCCC
Confidence            44664 4445 56699999999999998 698877653

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=92.43  E-value=0.07  Score=35.98  Aligned_cols=32  Identities=19%  Similarity=0.143  Sum_probs=26.4

Q ss_pred             eEEEEcCChhHHHHHHHHHHcC-CceEEEEEee
Q psy16200         71 TVIVLGAGDTAFDCATSALRCG-ANKVLVVFRK  102 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G-~~~V~lv~r~  102 (183)
                      ||.|||+|.+|..+|..++..| +.++.|+...
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~   34 (142)
T d1ojua1           2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIA   34 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSS
T ss_pred             EEEEECcCHHHHHHHHHHHhcCcCceEEEEecc
Confidence            6899999999999999888766 4578888643

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=92.41  E-value=0.078  Score=36.21  Aligned_cols=32  Identities=25%  Similarity=0.206  Sum_probs=26.2

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCC-ceEEEEEe
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGA-NKVLVVFR  101 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~-~~V~lv~r  101 (183)
                      ++|.|||.|.+|..+|..|.+.|. .+|+.+.+
T Consensus         2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~   34 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDI   34 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECS
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEEC
Confidence            469999999999999999999884 24666655

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=92.36  E-value=0.077  Score=39.14  Aligned_cols=36  Identities=22%  Similarity=0.405  Sum_probs=28.0

Q ss_pred             CCcce-EEEEc-CChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         67 ILKGT-VIVLG-AGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        67 ~~~~~-VvViG-gG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      .+.+| ++|-| ++-+|..+|+.|++.|+ +|.++.|+.
T Consensus         6 ~l~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~   43 (260)
T d1h5qa_           6 SFVNKTIIVTGGNRGIGLAFTRAVAAAGA-NVAVIYRSA   43 (260)
T ss_dssp             CCTTEEEEEETTTSHHHHHHHHHHHHTTE-EEEEEESSC
T ss_pred             cCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCH
Confidence            35566 55556 45599999999999998 699998864

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=92.35  E-value=0.097  Score=36.02  Aligned_cols=37  Identities=19%  Similarity=0.237  Sum_probs=31.0

Q ss_pred             CCCcceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         66 PILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        66 ~~~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      ...++.|+|+|+|-+|.-++..+...|+++|..+.++
T Consensus        26 vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~   62 (176)
T d2jhfa2          26 VTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDIN   62 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSC
T ss_pred             CCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCc
Confidence            4456679999999999999999999998778887654

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=92.26  E-value=0.1  Score=35.79  Aligned_cols=37  Identities=19%  Similarity=0.261  Sum_probs=30.5

Q ss_pred             CCCcceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         66 PILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        66 ~~~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      ...+++|+|+|+|-+|.-++..++..|+.+|..+.+.
T Consensus        26 ~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~   62 (175)
T d1cdoa2          26 VEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLN   62 (175)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSC
T ss_pred             CCCCCEEEEEecCCccchHHHHHHHHhhchheeecch
Confidence            3455679999999999999999999998778777654

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=92.24  E-value=0.074  Score=38.96  Aligned_cols=33  Identities=27%  Similarity=0.308  Sum_probs=26.2

Q ss_pred             cceEEEEcC-Ch--hHHHHHHHHHHcCCceEEEEEee
Q psy16200         69 KGTVIVLGA-GD--TAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        69 ~~~VvViGg-G~--~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      +|+++|.|+ |.  +|..+|+.|++.|+ +|.+..|.
T Consensus         6 gK~~lItGaag~~GIG~aiA~~la~~Ga-~Vil~~~~   41 (268)
T d2h7ma1           6 GKRILVSGIITDSSIAFHIARVAQEQGA-QLVLTGFD   41 (268)
T ss_dssp             TCEEEECCCSSTTCHHHHHHHHHHHTTC-EEEEEECS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHcCC-EEEEEeCC
Confidence            345777784 44  89999999999998 69988764

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=92.20  E-value=0.086  Score=37.54  Aligned_cols=34  Identities=26%  Similarity=0.164  Sum_probs=29.5

Q ss_pred             cceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      +++|.|||.|.+|..+|..|..+|+ +|....+..
T Consensus        45 ~ktvgIiG~G~IG~~va~~l~~fg~-~v~~~d~~~   78 (199)
T d1dxya1          45 QQTVGVMGTGHIGQVAIKLFKGFGA-KVIAYDPYP   78 (199)
T ss_dssp             GSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSC
T ss_pred             ceeeeeeecccccccccccccccce-eeeccCCcc
Confidence            4569999999999999999999998 698887643

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=92.19  E-value=0.088  Score=39.88  Aligned_cols=34  Identities=21%  Similarity=-0.034  Sum_probs=29.9

Q ss_pred             cceEEEEc-CChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         69 KGTVIVLG-AGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        69 ~~~VvViG-gG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      +|||+|.| .|++|..++..|.+.|. +|..+.|+.
T Consensus         8 ~KkILVTG~tGfIGs~lv~~Ll~~g~-~V~~~~r~~   42 (356)
T d1rkxa_           8 GKRVFVTGHTGFKGGWLSLWLQTMGA-TVKGYSLTA   42 (356)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCC
Confidence            47799997 78999999999999997 699998854

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=92.05  E-value=0.085  Score=35.37  Aligned_cols=31  Identities=19%  Similarity=0.269  Sum_probs=25.5

Q ss_pred             eEEEEcCChhHHHHHHHHHHcC-CceEEEEEe
Q psy16200         71 TVIVLGAGDTAFDCATSALRCG-ANKVLVVFR  101 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G-~~~V~lv~r  101 (183)
                      ||.|||+|.+|..+|..++..+ +.++.|+..
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di   33 (140)
T d1a5za1           2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDV   33 (140)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCCEEEEEec
Confidence            6899999999999999887766 346888764

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=92.03  E-value=0.12  Score=38.09  Aligned_cols=35  Identities=20%  Similarity=0.293  Sum_probs=27.1

Q ss_pred             Ccce-EEEEcCC-hhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         68 LKGT-VIVLGAG-DTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        68 ~~~~-VvViGgG-~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      +.+| |+|-||+ -+|.++|+.|++.|+ +|.++.|+.
T Consensus         3 l~gK~vlITGgs~GIG~~~A~~la~~G~-~vii~~r~~   39 (254)
T d1sbya1           3 LTNKNVIFVAALGGIGLDTSRELVKRNL-KNFVILDRV   39 (254)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTCC-SEEEEEESS
T ss_pred             CCCCEEEEecCCCHHHHHHHHHHHHCCC-EEEEEECCc
Confidence            3355 6666654 599999999999998 599998764

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=92.02  E-value=0.1  Score=38.52  Aligned_cols=34  Identities=21%  Similarity=0.355  Sum_probs=26.6

Q ss_pred             Ccce-EEEEcC-ChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         68 LKGT-VIVLGA-GDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        68 ~~~~-VvViGg-G~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      +.+| ++|-|| +-+|..+|+.|++.|+ +|.++.|+
T Consensus         3 L~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~   38 (260)
T d1zema1           3 FNGKVCLVTGAGGNIGLATALRLAEEGT-AIALLDMN   38 (260)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            3455 555564 5699999999999998 69999875

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.02  E-value=0.092  Score=38.70  Aligned_cols=34  Identities=24%  Similarity=0.341  Sum_probs=27.0

Q ss_pred             Ccce-EEEEc-CChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         68 LKGT-VIVLG-AGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        68 ~~~~-VvViG-gG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      +.+| ++|.| ++-+|..+|..|++.|+ +|.+..|+
T Consensus         8 lk~Kv~lITGas~GIG~aiA~~la~~G~-~Vv~~~r~   43 (257)
T d1xg5a_           8 WRDRLALVTGASGGIGAAVARALVQQGL-KVVGCART   43 (257)
T ss_dssp             GTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            5667 55555 66799999999999998 69998865

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=92.01  E-value=0.1  Score=38.33  Aligned_cols=34  Identities=29%  Similarity=0.491  Sum_probs=26.7

Q ss_pred             Ccce-EEEEc-CChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         68 LKGT-VIVLG-AGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        68 ~~~~-VvViG-gG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      +.+| ++|-| ++-+|..+|+.|++.|+ +|.++.|+
T Consensus         3 l~gK~~lITGas~GIG~aia~~la~~Ga-~V~i~~r~   38 (251)
T d1vl8a_           3 LRGRVALVTGGSRGLGFGIAQGLAEAGC-SVVVASRN   38 (251)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            3455 55566 45699999999999998 69999875

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=92.00  E-value=0.086  Score=40.08  Aligned_cols=33  Identities=21%  Similarity=0.212  Sum_probs=28.7

Q ss_pred             ceEEEEc-CChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         70 GTVIVLG-AGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        70 ~~VvViG-gG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      |+|+|+| .|++|..++..|.+.|. +|..+.|+.
T Consensus         4 ktIlVtGatG~iG~~lv~~Ll~~G~-~V~~l~R~~   37 (350)
T d1xgka_           4 KTIAVVGATGRQGASLIRVAAAVGH-HVRAQVHSL   37 (350)
T ss_dssp             CCEEEESTTSHHHHHHHHHHHHTTC-CEEEEESCS
T ss_pred             CEEEEECCChHHHHHHHHHHHhCCC-eEEEEECCc
Confidence            4599998 59999999999999997 699998853

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=91.98  E-value=0.084  Score=36.57  Aligned_cols=34  Identities=21%  Similarity=0.353  Sum_probs=28.4

Q ss_pred             CcceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         68 LKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        68 ~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      .+++|+|+|+|-+|--++..|.+.+ ++|+++.|.
T Consensus        17 ~~k~vlIlGaGGaarai~~aL~~~~-~~i~I~nR~   50 (171)
T d1p77a1          17 PNQHVLILGAGGATKGVLLPLLQAQ-QNIVLANRT   50 (171)
T ss_dssp             TTCEEEEECCSHHHHTTHHHHHHTT-CEEEEEESS
T ss_pred             CCCEEEEECCcHHHHHHHHHHcccC-ceeeeccch
Confidence            3456999999999999998888765 589999875

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=91.95  E-value=0.088  Score=38.69  Aligned_cols=36  Identities=14%  Similarity=0.141  Sum_probs=27.8

Q ss_pred             CCCcceEEEE-c-CChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         66 PILKGTVIVL-G-AGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        66 ~~~~~~VvVi-G-gG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      ..+.+||++| | ++-+|..+|..|++.|+ +|.++.|+
T Consensus         6 f~lenKvalITGas~GIG~a~a~~la~~Ga-~V~~~~r~   43 (251)
T d2c07a1           6 YCGENKVALVTGAGRGIGREIAKMLAKSVS-HVICISRT   43 (251)
T ss_dssp             CCCSSCEEEEESTTSHHHHHHHHHHTTTSS-EEEEEESS
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECC
Confidence            3455775555 5 45699999999999998 69998875

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=91.94  E-value=0.098  Score=38.70  Aligned_cols=36  Identities=31%  Similarity=0.349  Sum_probs=28.2

Q ss_pred             CCcceEEEE-c-CChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         67 ILKGTVIVL-G-AGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        67 ~~~~~VvVi-G-gG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      ++.+|++|| | ++-+|..+|..|++.|+ +|.+..|+.
T Consensus         4 dL~gK~alITGas~GIG~aia~~la~~G~-~Vv~~~r~~   41 (261)
T d1geea_           4 DLEGKVVVITGSSTGLGKSMAIRFATEKA-KVVVNYRSK   41 (261)
T ss_dssp             GGTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCc
Confidence            355675555 4 56799999999999998 699998763

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=91.93  E-value=0.1  Score=37.26  Aligned_cols=31  Identities=35%  Similarity=0.326  Sum_probs=27.1

Q ss_pred             cceEEEEcCChhHHHHHHHHHHcCCceEEEEE
Q psy16200         69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVF  100 (183)
Q Consensus        69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~  100 (183)
                      +++|+|-|-|.+|..+|++|.+.|+ +|++..
T Consensus        27 gk~v~IqG~G~VG~~~A~~L~~~Ga-kvvv~d   57 (201)
T d1c1da1          27 GLTVLVQGLGAVGGSLASLAAEAGA-QLLVAD   57 (201)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTC-EEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC-EEEEec
Confidence            4569999999999999999999998 587654

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=91.87  E-value=0.13  Score=37.92  Aligned_cols=35  Identities=17%  Similarity=0.229  Sum_probs=27.2

Q ss_pred             CCcceEEEE-c-CChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         67 ILKGTVIVL-G-AGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        67 ~~~~~VvVi-G-gG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      .+.+|++|| | ++-+|..+|..|++.|+ +|.++.|+
T Consensus         5 ~LkgK~alVTGas~GIG~aiA~~la~~Ga-~V~~~~r~   41 (259)
T d1xq1a_           5 SLKAKTVLVTGGTKGIGHAIVEEFAGFGA-VIHTCARN   41 (259)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            355665555 4 55699999999999998 69999875

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=91.86  E-value=0.11  Score=35.53  Aligned_cols=36  Identities=17%  Similarity=0.173  Sum_probs=29.1

Q ss_pred             CCCcceEEEEcCChhHHHHHHHHHHcCCceEEEEEe
Q psy16200         66 PILKGTVIVLGAGDTAFDCATSALRCGANKVLVVFR  101 (183)
Q Consensus        66 ~~~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r  101 (183)
                      ...++.|+|+|+|-+|.-++..+..+|++.|..+.+
T Consensus        26 ~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~   61 (176)
T d2fzwa2          26 LEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDI   61 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECS
T ss_pred             CCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcc
Confidence            345667999999999999999999999866666544

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.84  E-value=0.086  Score=37.14  Aligned_cols=35  Identities=29%  Similarity=0.220  Sum_probs=27.8

Q ss_pred             cceEEEEcC-ChhHHHHHHHHHHcCCc-eEEEEEeec
Q psy16200         69 KGTVIVLGA-GDTAFDCATSALRCGAN-KVLVVFRKG  103 (183)
Q Consensus        69 ~~~VvViGg-G~~g~e~A~~l~~~G~~-~V~lv~r~~  103 (183)
                      +|||+|.|| |++|-.++..|.+.|.. +|+.+.|+.
T Consensus         2 ~KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~   38 (212)
T d2a35a1           2 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKA   38 (212)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCc
Confidence            478999997 99999999999999842 466666553

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=91.83  E-value=0.094  Score=37.34  Aligned_cols=33  Identities=24%  Similarity=0.121  Sum_probs=28.3

Q ss_pred             CcceEEEEcCChhHHHHHHHHHHcCCceEEEEEe
Q psy16200         68 LKGTVIVLGAGDTAFDCATSALRCGANKVLVVFR  101 (183)
Q Consensus        68 ~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r  101 (183)
                      .+++|.|||-|.+|..+|..|..+|+ +|....+
T Consensus        42 ~gk~vgIiG~G~IG~~va~~l~~fg~-~V~~~d~   74 (197)
T d1j4aa1          42 RDQVVGVVGTGHIGQVFMQIMEGFGA-KVITYDI   74 (197)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTC-EEEEECS
T ss_pred             cCCeEEEecccccchhHHHhHhhhcc-cccccCc
Confidence            34569999999999999999999998 6877654

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=91.81  E-value=0.17  Score=35.02  Aligned_cols=36  Identities=19%  Similarity=0.228  Sum_probs=30.2

Q ss_pred             CCcceEEEEcCCh-hHHHHHHHHHHcCCceEEEEEeec
Q psy16200         67 ILKGTVIVLGAGD-TAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        67 ~~~~~VvViGgG~-~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      ..+++|+|||.+. +|.-+|..|.+.|+ .|++++.++
T Consensus        35 l~GK~v~VIGrS~~VG~Pla~lL~~~ga-tVt~~h~~t   71 (166)
T d1b0aa1          35 TFGLNAVVIGASNIVGRPMSMELLLAGC-TTTVTHRFT   71 (166)
T ss_dssp             CTTCEEEEECCCTTTHHHHHHHHHTTTC-EEEEECSSC
T ss_pred             cccceEEEEeccccccHHHHHHHHHhhc-ccccccccc
Confidence            3456699999666 99999999999998 699998764

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=91.77  E-value=0.11  Score=38.26  Aligned_cols=33  Identities=30%  Similarity=0.414  Sum_probs=26.3

Q ss_pred             cce-EEEEc-CChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         69 KGT-VIVLG-AGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        69 ~~~-VvViG-gG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      .+| ++|-| ++-+|..+|..|++.|+ +|.++.|+
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~   38 (254)
T d1hdca_           4 SGKTVIITGGARGLGAEAARQAVAAGA-RVVLADVL   38 (254)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            355 66666 44699999999999998 69999875

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.75  E-value=0.09  Score=36.20  Aligned_cols=33  Identities=30%  Similarity=0.499  Sum_probs=27.1

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCC-ceEEEEEee
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGA-NKVLVVFRK  102 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~-~~V~lv~r~  102 (183)
                      .||.|||+|.+|..+|..|...|. .++.|+.+.
T Consensus        20 ~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~   53 (159)
T d2ldxa1          20 CKITVVGVGDVGMACAISILLKGLADELALVDAD   53 (159)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSC
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence            369999999999999999988763 468887643

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=91.68  E-value=0.11  Score=35.04  Aligned_cols=31  Identities=19%  Similarity=0.118  Sum_probs=26.3

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHcCC-ceEEEEEe
Q psy16200         71 TVIVLGA-GDTAFDCATSALRCGA-NKVLVVFR  101 (183)
Q Consensus        71 ~VvViGg-G~~g~e~A~~l~~~G~-~~V~lv~r  101 (183)
                      ||+|||+ |.+|..+|..|+..|. .++.|+..
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi   34 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDI   34 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEES
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEec
Confidence            6999996 9999999999998874 67888853

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=91.67  E-value=0.11  Score=37.58  Aligned_cols=33  Identities=15%  Similarity=0.228  Sum_probs=26.4

Q ss_pred             eEEEE-c-CChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200         71 TVIVL-G-AGDTAFDCATSALRCGANKVLVVFRKGC  104 (183)
Q Consensus        71 ~VvVi-G-gG~~g~e~A~~l~~~G~~~V~lv~r~~~  104 (183)
                      ||+|| | ++-+|..+|+.|++.|+ +|.++.|+..
T Consensus         2 kVvlITGas~GIG~aiA~~la~~Ga-~V~~~~~~~~   36 (257)
T d1fjha_           2 SIIVISGCATGIGAATRKVLEAAGH-QIVGIDIRDA   36 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSSS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECChH
Confidence            44444 5 56699999999999998 6999998754

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.67  E-value=0.11  Score=37.92  Aligned_cols=34  Identities=35%  Similarity=0.374  Sum_probs=27.8

Q ss_pred             CcceEEEE--cCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         68 LKGTVIVL--GAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        68 ~~~~VvVi--GgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      +.+|+++|  |++-+|..+|+.|++.|+ +|.++.|+
T Consensus         4 l~gK~alITGas~GIG~aia~~la~~G~-~Vi~~~r~   39 (245)
T d2ag5a1           4 LDGKVIILTAAAQGIGQAAALAFAREGA-KVIATDIN   39 (245)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCC
Confidence            44665555  577899999999999998 69999875

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=91.63  E-value=0.12  Score=38.16  Aligned_cols=34  Identities=26%  Similarity=0.291  Sum_probs=27.4

Q ss_pred             CcceEEEE-c-CChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         68 LKGTVIVL-G-AGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        68 ~~~~VvVi-G-gG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      +.+||++| | ++-+|..+|..|++.|+ +|.++.|+
T Consensus         3 l~gKvalVTGas~GIG~aia~~la~~Ga-~V~~~~r~   38 (264)
T d1spxa_           3 FAEKVAIITGSSNGIGRATAVLFAREGA-KVTITGRH   38 (264)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            44676666 4 56799999999999998 69999875

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=91.63  E-value=0.12  Score=37.74  Aligned_cols=34  Identities=21%  Similarity=0.288  Sum_probs=26.6

Q ss_pred             CcceEEEE-c-CChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         68 LKGTVIVL-G-AGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        68 ~~~~VvVi-G-gG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      +.+|++|| | ++-+|..+|+.|++.|+ +|.+..|+
T Consensus         2 l~gK~alITGas~GIG~a~a~~l~~~G~-~Vv~~~r~   37 (243)
T d1q7ba_           2 FEGKIALVTGASRGIGRAIAETLAARGA-KVIGTATS   37 (243)
T ss_dssp             CTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCC
Confidence            34666566 5 56699999999999998 69888775

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=91.55  E-value=0.12  Score=38.18  Aligned_cols=34  Identities=32%  Similarity=0.395  Sum_probs=26.6

Q ss_pred             Ccce-EEEEc-CChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         68 LKGT-VIVLG-AGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        68 ~~~~-VvViG-gG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      +.+| ++|.| ++-+|..+|+.|++.|+ +|.++.|+
T Consensus         4 L~gKvalITGas~GIG~aia~~la~~Ga-~V~i~~r~   39 (268)
T d2bgka1           4 LQDKVAIITGGAGGIGETTAKLFVRYGA-KVVIADIA   39 (268)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence            4466 55555 55699999999999998 69999875

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=91.52  E-value=0.13  Score=37.98  Aligned_cols=35  Identities=23%  Similarity=0.341  Sum_probs=27.3

Q ss_pred             CCcce-EEEEc-CChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         67 ILKGT-VIVLG-AGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        67 ~~~~~-VvViG-gG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      ++.+| ++|-| ++-+|..+|..|++.|+ +|.++.|+
T Consensus         5 ~L~GK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~   41 (259)
T d2ae2a_           5 NLEGCTALVTGGSRGIGYGIVEELASLGA-SVYTCSRN   41 (259)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            35566 55556 45699999999999998 69999875

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=91.49  E-value=0.14  Score=37.73  Aligned_cols=34  Identities=29%  Similarity=0.439  Sum_probs=27.7

Q ss_pred             Ccce-EEEEc-CChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         68 LKGT-VIVLG-AGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        68 ~~~~-VvViG-gG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      +.+| ++|.| ++-+|..+|..|++.|+ +|.++.|+
T Consensus         4 L~gK~alITGas~GIG~aia~~la~~G~-~V~i~~r~   39 (258)
T d1ae1a_           4 LKGTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSRN   39 (258)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            3455 77776 66799999999999998 69999875

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.47  E-value=0.13  Score=37.43  Aligned_cols=33  Identities=30%  Similarity=0.391  Sum_probs=26.4

Q ss_pred             cce-EEEEc-CChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         69 KGT-VIVLG-AGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        69 ~~~-VvViG-gG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      .+| ++|-| ++-+|..+|..|++.|+ +|.++.|+
T Consensus         4 ~GK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~   38 (242)
T d1cyda_           4 SGLRALVTGAGKGIGRDTVKALHASGA-KVVAVTRT   38 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence            345 66666 45699999999999998 69999875

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.36  E-value=0.11  Score=35.46  Aligned_cols=32  Identities=22%  Similarity=0.215  Sum_probs=28.3

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      +||.+||-|.+|..+|..|.+.|. +|++..|+
T Consensus         2 ~kIg~IGlG~MG~~iA~~L~~~g~-~v~~~d~~   33 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNLLKAGY-LLNVFDLV   33 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTC-EEEEECSS
T ss_pred             CEEEEEEEHHHHHHHHHHHHHCCC-eEEEEECc
Confidence            469999999999999999999996 79887764

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=91.34  E-value=0.11  Score=38.16  Aligned_cols=33  Identities=27%  Similarity=0.319  Sum_probs=26.1

Q ss_pred             cceEEEE-c-CChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         69 KGTVIVL-G-AGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        69 ~~~VvVi-G-gG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      .+|+++| | ++-+|..+|+.|++.|+ +|.+..|+
T Consensus         3 ~gK~alITGas~GIG~aiA~~la~~Ga-~V~~~~r~   37 (260)
T d1x1ta1           3 KGKVAVVTGSTSGIGLGIATALAAQGA-DIVLNGFG   37 (260)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEECCS
T ss_pred             CcCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            3565555 4 55599999999999998 69999875

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=91.34  E-value=0.1  Score=38.01  Aligned_cols=33  Identities=21%  Similarity=0.418  Sum_probs=26.1

Q ss_pred             ceEEEEcCC---hhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         70 GTVIVLGAG---DTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        70 ~~VvViGgG---~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      |+++|-||+   -+|..+|..|++.|+ +|.+..|+.
T Consensus         6 K~~lITGass~~GIG~aiA~~l~~~G~-~V~i~~~~~   41 (258)
T d1qsga_           6 KRILVTGVASKLSIAYGIAQAMHREGA-ELAFTYQND   41 (258)
T ss_dssp             CEEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEESST
T ss_pred             CEEEEECCCCchhHHHHHHHHHHHcCC-EEEEEeCCH
Confidence            447777765   378899999999998 699998763

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.32  E-value=0.14  Score=37.55  Aligned_cols=34  Identities=26%  Similarity=0.233  Sum_probs=26.7

Q ss_pred             Ccce-EEEEc-CChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         68 LKGT-VIVLG-AGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        68 ~~~~-VvViG-gG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      +.+| ++|-| ++-+|..+|..|++.|+ +|.+..|+
T Consensus         4 L~gK~alITGas~GIG~aia~~la~~G~-~V~~~~r~   39 (244)
T d1nffa_           4 LTGKVALVSGGARGMGASHVRAMVAEGA-KVVFGDIL   39 (244)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            3456 55556 46699999999999998 69998875

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=91.27  E-value=0.16  Score=34.54  Aligned_cols=37  Identities=16%  Similarity=0.111  Sum_probs=29.7

Q ss_pred             CCCcceEEEEc-CChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         66 PILKGTVIVLG-AGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        66 ~~~~~~VvViG-gG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      ...+++|+|+| +|.+|+-++..+...|.++|+++.++
T Consensus        25 ~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~   62 (170)
T d1jvba2          25 LDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVR   62 (170)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred             CCCCCEEEEEeccccceeeeeecccccccccccccccc
Confidence            34557799999 59999999999988897678777654

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=91.26  E-value=0.14  Score=37.31  Aligned_cols=34  Identities=26%  Similarity=0.324  Sum_probs=27.0

Q ss_pred             cce-EEEEc-CChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         69 KGT-VIVLG-AGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        69 ~~~-VvViG-gG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      .+| ++|.| ++-+|..+|+.|++.|+ +|.+..|+.
T Consensus         4 ~gK~alItGas~GIG~aia~~l~~~G~-~V~~~~r~~   39 (241)
T d2a4ka1           4 SGKTILVTGAASGIGRAALDLFAREGA-SLVAVDREE   39 (241)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCH
Confidence            355 66666 45599999999999998 699998764

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=91.17  E-value=0.34  Score=36.44  Aligned_cols=30  Identities=23%  Similarity=0.368  Sum_probs=26.6

Q ss_pred             eEEEEc-CChhHHHHHHHHHHcCCceEEEEEe
Q psy16200         71 TVIVLG-AGDTAFDCATSALRCGANKVLVVFR  101 (183)
Q Consensus        71 ~VvViG-gG~~g~e~A~~l~~~G~~~V~lv~r  101 (183)
                      ||+|.| +|++|..++..|.+.|. +|+++.|
T Consensus         2 KiLItG~tGfIG~~l~~~L~~~g~-~V~~~d~   32 (338)
T d1udca_           2 RVLVTGGSGYIGSHTCVQLLQNGH-DVIILDN   32 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-EEEEEEC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCcC-EEEEEEC
Confidence            588996 89999999999999996 7999875

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=91.16  E-value=0.14  Score=37.48  Aligned_cols=34  Identities=32%  Similarity=0.458  Sum_probs=26.9

Q ss_pred             CcceEEEE-c-CChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         68 LKGTVIVL-G-AGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        68 ~~~~VvVi-G-gG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      +.+|+++| | ++-+|..+|..|++.|+ +|.++.|+
T Consensus         4 L~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~   39 (251)
T d1zk4a1           4 LDGKVAIITGGTLGIGLAIATKFVEEGA-KVMITGRH   39 (251)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            44665555 4 56699999999999998 69999875

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=91.11  E-value=0.14  Score=37.63  Aligned_cols=34  Identities=21%  Similarity=0.179  Sum_probs=26.3

Q ss_pred             cce-EEEEc-CChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         69 KGT-VIVLG-AGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        69 ~~~-VvViG-gG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      .+| ++|-| ++-+|..+|..|++.|+ +|.++.|+.
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~   38 (258)
T d1iy8a_           3 TDRVVLITGGGSGLGRATAVRLAAEGA-KLSLVDVSS   38 (258)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCH
Confidence            355 55556 45699999999999998 699998753

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=91.09  E-value=0.16  Score=37.13  Aligned_cols=35  Identities=20%  Similarity=0.149  Sum_probs=26.8

Q ss_pred             Ccce-EEEEc-CChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         68 LKGT-VIVLG-AGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        68 ~~~~-VvViG-gG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      +.+| ++|-| ++-+|..+|..|++.|+ +|.+..|+.
T Consensus         3 L~gKvalVTGas~GIG~aia~~la~~Ga-~V~~~~~~~   39 (247)
T d2ew8a1           3 LKDKLAVITGGANGIGRAIAERFAVEGA-DIAIADLVP   39 (247)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCc
Confidence            3456 55556 45699999999999998 699988753

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=91.08  E-value=0.12  Score=34.84  Aligned_cols=32  Identities=25%  Similarity=0.420  Sum_probs=26.6

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      ||.+||+|.+|.-+|.-|.+.|..+|.+..|+
T Consensus         2 kI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~   33 (152)
T d1yqga2           2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRG   33 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSS
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCC
Confidence            58999999999999998888875578877654

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=91.05  E-value=0.081  Score=36.70  Aligned_cols=32  Identities=19%  Similarity=0.354  Sum_probs=26.1

Q ss_pred             cceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      +++|+|+|+|-+|--++..|.+.|  +|+|+.|.
T Consensus        18 ~k~vlIlGaGG~arai~~aL~~~~--~i~I~nR~   49 (177)
T d1nvta1          18 DKNIVIYGAGGAARAVAFELAKDN--NIIIANRT   49 (177)
T ss_dssp             SCEEEEECCSHHHHHHHHHHTSSS--EEEEECSS
T ss_pred             CCEEEEECCcHHHHHHHHHHcccc--ceeeehhh
Confidence            356999999999998888887654  69988774

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=91.04  E-value=0.15  Score=37.84  Aligned_cols=33  Identities=30%  Similarity=0.356  Sum_probs=26.7

Q ss_pred             cce-EEEEc-CChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         69 KGT-VIVLG-AGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        69 ~~~-VvViG-gG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      .+| ++|-| ++-+|..+|..|++.|+ +|.++.|+
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~   38 (276)
T d1bdba_           4 KGEAVLITGGASGLGRALVDRFVAEGA-KVAVLDKS   38 (276)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            355 55666 56799999999999998 69999875

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=90.97  E-value=0.14  Score=37.39  Aligned_cols=34  Identities=26%  Similarity=0.500  Sum_probs=26.7

Q ss_pred             Ccce-EEEEcCC---hhHHHHHHHHHHcCCceEEEEEee
Q psy16200         68 LKGT-VIVLGAG---DTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        68 ~~~~-VvViGgG---~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      +.+| ++|-|++   -+|..+|+.|++.|+ +|.+..|+
T Consensus         6 L~gK~alITGas~~~GIG~aiA~~la~~Ga-~V~i~~~~   43 (256)
T d1ulua_           6 LSGKKALVMGVTNQRSLGFAIAAKLKEAGA-EVALSYQA   43 (256)
T ss_dssp             CTTCEEEEESCCCSSSHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             CCCCEEEEECCCCCchHHHHHHHHHHHCCC-EEEEEeCc
Confidence            4455 7777864   499999999999998 69887764

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=90.94  E-value=0.062  Score=41.40  Aligned_cols=31  Identities=26%  Similarity=0.347  Sum_probs=27.2

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      .++|||+|..|+-+|..|++. . +|.|+++.+
T Consensus        28 D~IIVGsG~aG~vlA~rLae~-~-kVLvLEaG~   58 (351)
T d1ju2a1          28 DYVIVGGGTSGCPLAATLSEK-Y-KVLVLERGS   58 (351)
T ss_dssp             EEEEECCSTTHHHHHHHHTTT-S-CEEEECSSB
T ss_pred             cEEEECccHHHHHHHHHhcCC-C-CEEEEecCC
Confidence            499999999999999999875 5 699999864

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=90.93  E-value=0.11  Score=35.36  Aligned_cols=31  Identities=23%  Similarity=0.267  Sum_probs=27.4

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      ||.|||-|.+|.-+|..|++.|. +|++..|.
T Consensus         2 kIgiIGlG~MG~~~A~~L~~~G~-~V~~~d~~   32 (161)
T d1vpda2           2 KVGFIGLGIMGKPMSKNLLKAGY-SLVVSDRN   32 (161)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTC-EEEEECSC
T ss_pred             EEEEEehhHHHHHHHHHHHHCCC-eEEEEeCC
Confidence            58999999999999999999996 69887664

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.88  E-value=0.15  Score=38.40  Aligned_cols=34  Identities=32%  Similarity=0.448  Sum_probs=26.9

Q ss_pred             Ccce-EEEEc-CChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         68 LKGT-VIVLG-AGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        68 ~~~~-VvViG-gG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      +.+| ++|-| ++-+|..+|..|++.|+ +|.++.|+
T Consensus        10 L~gKvalITGas~GIG~aia~~la~~Ga-~Vvi~~r~   45 (297)
T d1yxma1          10 LQGQVAIVTGGATGIGKAIVKELLELGS-NVVIASRK   45 (297)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            5566 55555 55699999999999998 69999875

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=90.81  E-value=0.14  Score=37.62  Aligned_cols=35  Identities=23%  Similarity=0.292  Sum_probs=27.7

Q ss_pred             CCcceEEEE-c-CChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         67 ILKGTVIVL-G-AGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        67 ~~~~~VvVi-G-gG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      .+.+|++|| | ++-+|..+|..|++.|+ +|.+..|+
T Consensus         8 ~L~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~   44 (255)
T d1fmca_           8 RLDGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDIN   44 (255)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHTTTC-EEEEEESC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence            355675556 4 56799999999999998 69999875

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=90.79  E-value=0.15  Score=37.49  Aligned_cols=33  Identities=24%  Similarity=0.318  Sum_probs=26.5

Q ss_pred             cce-EEEEc-CChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         69 KGT-VIVLG-AGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        69 ~~~-VvViG-gG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      .+| ++|-| ++-+|..+|..|++.|+ +|.++.|+
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~   38 (256)
T d1k2wa_           4 DGKTALITGSARGIGRAFAEAYVREGA-RVAIADIN   38 (256)
T ss_dssp             TTEEEEEETCSSHHHHHHHHHHHHTTE-EEEEEESC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            355 66666 46799999999999998 69999875

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=90.79  E-value=0.16  Score=37.11  Aligned_cols=34  Identities=29%  Similarity=0.247  Sum_probs=26.9

Q ss_pred             cce-EEEEc-CChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         69 KGT-VIVLG-AGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        69 ~~~-VvViG-gG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      .+| ++|-| ++-+|..+|..|++.|+ +|.+..|+.
T Consensus         4 ~GK~alITGas~GIG~aia~~la~~G~-~V~~~~~~~   39 (248)
T d2d1ya1           4 AGKGVLVTGGARGIGRAIAQAFAREGA-LVALCDLRP   39 (248)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESST
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCH
Confidence            355 55555 66799999999999998 699998763

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=90.75  E-value=0.15  Score=37.67  Aligned_cols=35  Identities=29%  Similarity=0.431  Sum_probs=27.3

Q ss_pred             CcceEEEE-c-CChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         68 LKGTVIVL-G-AGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        68 ~~~~VvVi-G-gG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      +.+|+++| | ++-+|..+|..|++.|+ +|.+..|+.
T Consensus        16 L~gK~~lITGas~GIG~aia~~la~~Ga-~Vvi~~~~~   52 (272)
T d1g0oa_          16 LEGKVALVTGAGRGIGREMAMELGRRGC-KVIVNYANS   52 (272)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCc
Confidence            55665555 5 67789999999999998 699988763

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=90.75  E-value=0.11  Score=35.01  Aligned_cols=31  Identities=23%  Similarity=0.268  Sum_probs=27.0

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      ||.|||.|.+|.-+|..|.+.|. +|++..++
T Consensus         2 kIgiIG~G~mG~~ia~~l~~~g~-~v~~~~~~   32 (152)
T d1i36a2           2 RVGFIGFGEVAQTLASRLRSRGV-EVVTSLEG   32 (152)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTC-EEEECCTT
T ss_pred             EEEEEcHHHHHHHHHHHHHHCCC-eEEEEcCc
Confidence            58999999999999999999996 68777643

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=90.73  E-value=0.17  Score=36.78  Aligned_cols=33  Identities=18%  Similarity=0.179  Sum_probs=26.4

Q ss_pred             cce-EEEEc-CChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         69 KGT-VIVLG-AGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        69 ~~~-VvViG-gG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      .+| ++|-| ++-+|..+|+.|++.|+ +|.++.|+
T Consensus         4 ~gK~~lITGas~GIG~aia~~l~~~G~-~V~~~~r~   38 (242)
T d1ulsa_           4 KDKAVLITGAAHGIGRATLELFAKEGA-RLVACDIE   38 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            345 66666 45699999999999998 69999875

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=90.64  E-value=0.14  Score=36.64  Aligned_cols=32  Identities=22%  Similarity=0.172  Sum_probs=26.1

Q ss_pred             EEEEc-CChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200         72 VIVLG-AGDTAFDCATSALRCGANKVLVVFRKGC  104 (183)
Q Consensus        72 VvViG-gG~~g~e~A~~l~~~G~~~V~lv~r~~~  104 (183)
                      ++|-| ++-+|..+|+.|++.|+ +|.++.|+..
T Consensus         4 alITGas~GIG~aiA~~la~~Ga-~V~i~~~~~~   36 (241)
T d1uaya_           4 ALVTGGASGLGRAAALALKARGY-RVVVLDLRRE   36 (241)
T ss_dssp             EEEETTTSHHHHHHHHHHHHHTC-EEEEEESSCC
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCcc
Confidence            55555 47799999999999998 6999998643

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=90.63  E-value=0.2  Score=37.89  Aligned_cols=35  Identities=29%  Similarity=0.187  Sum_probs=28.8

Q ss_pred             CCcceEEEEc-CChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         67 ILKGTVIVLG-AGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        67 ~~~~~VvViG-gG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      +.+++|+|.| .|++|..++..|.+.|. +|..+.|+
T Consensus         9 ~~gk~VlVTG~sGfIGs~l~~~Ll~~G~-~V~~~vR~   44 (342)
T d1y1pa1           9 PEGSLVLVTGANGFVASHVVEQLLEHGY-KVRGTARS   44 (342)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             CCcCEEEEECCCCHHHHHHHHHHHHCcC-EEEEEeCC
Confidence            3456799997 79999999999999997 68877663

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.56  E-value=0.29  Score=33.95  Aligned_cols=37  Identities=19%  Similarity=0.147  Sum_probs=30.4

Q ss_pred             CCcceEEEEcCCh-hHHHHHHHHHHcCCceEEEEEeecC
Q psy16200         67 ILKGTVIVLGAGD-TAFDCATSALRCGANKVLVVFRKGC  104 (183)
Q Consensus        67 ~~~~~VvViGgG~-~g~e~A~~l~~~G~~~V~lv~r~~~  104 (183)
                      ..+++|+|||.+. +|.-+|..|.+.|+ .|++++..+.
T Consensus        37 l~Gk~vvVIGrS~iVGrPLa~lL~~~ga-tVt~~~~~t~   74 (170)
T d1a4ia1          37 IAGRHAVVVGRSKIVGAPMHDLLLWNNA-TVTTCHSKTA   74 (170)
T ss_dssp             CTTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTTCS
T ss_pred             cccceEEEEecCCccchHHHHHHHhccC-ceEEEecccc
Confidence            3456699999655 99999999999998 7999987543

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=90.44  E-value=0.1  Score=36.57  Aligned_cols=29  Identities=17%  Similarity=0.149  Sum_probs=24.6

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEe
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFR  101 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r  101 (183)
                      ||.|||.|++|+-+|..++ .|. +|+.+.-
T Consensus         2 kI~ViGlG~vGl~~a~~~a-~g~-~V~g~Di   30 (196)
T d1dlja2           2 KIAVAGSGYVGLSLGVLLS-LQN-EVTIVDI   30 (196)
T ss_dssp             EEEEECCSHHHHHHHHHHT-TTS-EEEEECS
T ss_pred             EEEEECCChhHHHHHHHHH-CCC-cEEEEEC
Confidence            5899999999999998776 586 6988864

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=90.40  E-value=0.18  Score=37.34  Aligned_cols=33  Identities=21%  Similarity=0.340  Sum_probs=25.8

Q ss_pred             cceEEEE-c-CChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         69 KGTVIVL-G-AGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        69 ~~~VvVi-G-gG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      .+|+++| | ++-+|..+|..|++.|+ +|.++.|+
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~   37 (274)
T d1xhla_           3 SGKSVIITGSSNGIGRSAAVIFAKEGA-QVTITGRN   37 (274)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence            3565555 4 55699999999999998 69999875

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=90.40  E-value=0.13  Score=36.35  Aligned_cols=34  Identities=24%  Similarity=0.146  Sum_probs=29.1

Q ss_pred             CcceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         68 LKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        68 ~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      .+++|.|||-|.+|-.+|..|..+|+ +|....+.
T Consensus        48 ~gktvgIiG~G~IG~~va~~l~~fg~-~v~~~d~~   81 (193)
T d1mx3a1          48 RGETLGIIGLGRVGQAVALRAKAFGF-NVLFYDPY   81 (193)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECTT
T ss_pred             eCceEEEeccccccccceeeeecccc-ceeeccCc
Confidence            34569999999999999999999998 68877653

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.37  E-value=0.19  Score=36.85  Aligned_cols=34  Identities=21%  Similarity=0.367  Sum_probs=26.8

Q ss_pred             Ccce-EEEEc-CChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         68 LKGT-VIVLG-AGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        68 ~~~~-VvViG-gG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      +.+| ++|-| ++-+|..+|..|++.|+ +|.+..|+
T Consensus         4 l~GK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~   39 (250)
T d1ydea1           4 YAGKVVVVTGGGRGIGAGIVRAFVNSGA-RVVICDKD   39 (250)
T ss_dssp             TTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            3455 66666 46799999999999998 69998864

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=90.36  E-value=0.17  Score=37.13  Aligned_cols=32  Identities=22%  Similarity=0.335  Sum_probs=25.9

Q ss_pred             ceEEEE-c-CChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         70 GTVIVL-G-AGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        70 ~~VvVi-G-gG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      +||++| | ++-+|..+|..|++.|+ +|.++.|+
T Consensus         2 gKValITGas~GIG~aia~~la~~Ga-~V~i~~r~   35 (257)
T d2rhca1           2 SEVALVTGATSGIGLEIARRLGKEGL-RVFVCARG   35 (257)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            466666 4 55699999999999998 69999875

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.34  E-value=0.19  Score=37.98  Aligned_cols=37  Identities=27%  Similarity=0.293  Sum_probs=28.7

Q ss_pred             CCCcceEEEE-c-CChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         66 PILKGTVIVL-G-AGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        66 ~~~~~~VvVi-G-gG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      ..+.+|++|| | ++-+|..+|..|++.|+ +|.+..+..
T Consensus         3 m~l~gKvalITGas~GIG~aiA~~la~~Ga-~Vvi~d~~~   41 (302)
T d1gz6a_           3 LRFDGRVVLVTGAGGGLGRAYALAFAERGA-LVVVNDLGG   41 (302)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECCCB
T ss_pred             cCcCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCc
Confidence            3466776666 4 55699999999999998 699987754

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.31  E-value=0.19  Score=36.69  Aligned_cols=35  Identities=14%  Similarity=0.151  Sum_probs=27.1

Q ss_pred             CCcceEEEE-cC-ChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         67 ILKGTVIVL-GA-GDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        67 ~~~~~VvVi-Gg-G~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      .+.+|+++| || +-+|.++|..|++.|+ +|.++.|+
T Consensus         4 ~l~Gkv~lITGas~GIG~~ia~~la~~G~-~V~l~~r~   40 (244)
T d1yb1a_           4 SVTGEIVLITGAGHGIGRLTAYEFAKLKS-KLVLWDIN   40 (244)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence            355675555 64 4599999999999998 69998875

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=90.31  E-value=0.15  Score=37.46  Aligned_cols=32  Identities=19%  Similarity=0.370  Sum_probs=26.8

Q ss_pred             ceEEEEcC-C--hhHHHHHHHHHHcCCceEEEEEee
Q psy16200         70 GTVIVLGA-G--DTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        70 ~~VvViGg-G--~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      |+++|.|| |  -+|..+|..|++.|+ +|.++.|.
T Consensus         6 K~alITGaag~~GIG~AiA~~la~~Ga-~V~i~~r~   40 (274)
T d2pd4a1           6 KKGLIVGVANNKSIAYGIAQSCFNQGA-TLAFTYLN   40 (274)
T ss_dssp             CEEEEECCCSTTSHHHHHHHHHHTTTC-EEEEEESS
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            45788885 4  499999999999998 69999875

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.24  E-value=0.19  Score=36.29  Aligned_cols=34  Identities=18%  Similarity=0.115  Sum_probs=28.3

Q ss_pred             cceEEEEcC-ChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         69 KGTVIVLGA-GDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        69 ~~~VvViGg-G~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      +|+|+|.|| +-+|..+|+.|++.|+ +|.++.+..
T Consensus         2 gK~vlITGas~GIG~a~a~~l~~~G~-~V~~~~~~~   36 (236)
T d1dhra_           2 ARRVLVYGGRGALGSRCVQAFRARNW-WVASIDVVE   36 (236)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESSC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCc
Confidence            356888875 6699999999999998 699998754

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.09  E-value=0.2  Score=36.42  Aligned_cols=34  Identities=29%  Similarity=0.394  Sum_probs=26.9

Q ss_pred             Ccce-EEEEc-CChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         68 LKGT-VIVLG-AGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        68 ~~~~-VvViG-gG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      +.+| ++|.| ++-+|..+|+.|++.|+ +|.++.|+
T Consensus         5 L~GK~~lITGas~GIG~aia~~la~~G~-~V~~~~r~   40 (244)
T d1pr9a_           5 LAGRRVLVTGAGKGIGRGTVQALHATGA-RVVAVSRT   40 (244)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECC
Confidence            3455 66666 56699999999999998 69998875

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=89.99  E-value=0.21  Score=36.09  Aligned_cols=32  Identities=28%  Similarity=0.262  Sum_probs=26.4

Q ss_pred             ceEEEEcC-ChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         70 GTVIVLGA-GDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        70 ~~VvViGg-G~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      |.++|-|| +-+|..+|..|++.|+ +|.+..|+
T Consensus         5 K~~lVTGas~GIG~aia~~l~~~Ga-~V~~~~r~   37 (234)
T d1o5ia_           5 KGVLVLAASRGIGRAVADVLSQEGA-EVTICARN   37 (234)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence            44777774 6699999999999998 69999875

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=89.99  E-value=0.22  Score=37.96  Aligned_cols=57  Identities=14%  Similarity=0.096  Sum_probs=38.3

Q ss_pred             HHHHHcC-cEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccc
Q psy16200        115 QLAWEEK-CEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGS  177 (183)
Q Consensus       115 ~~~~~~g-v~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~  177 (183)
                      ..+.+.| +++++++.+.+|..++++..++.+...  +..+.    ....+++.||.||+|.|.
T Consensus       230 ~~a~~~g~~~i~t~~~V~~I~~~~~~~~~V~v~~~--~~~~~----~~~~~~~~A~~VILaAGa  287 (370)
T d3coxa1         230 AQAAATGKLTITTLHRVTKVAPATGSGYSVTMEQI--DEQGN----VVATKVVTADRVFFAAGS  287 (370)
T ss_dssp             HHHHHTTCEEEECSEEEEEEEECSSSSEEEEEEEE--CTTSC----EEEEEEEEEEEEEECSHH
T ss_pred             HHHHhCCCcEEEecCcEEEEEEcCCCeEEEEEEEe--CCccc----eeeEEEEECCEEEEeeCH
Confidence            3444555 899999999999875555555666532  22221    123467999999999985

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=89.84  E-value=0.18  Score=36.93  Aligned_cols=34  Identities=29%  Similarity=0.368  Sum_probs=26.3

Q ss_pred             CcceEEEE-c-CChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         68 LKGTVIVL-G-AGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        68 ~~~~VvVi-G-gG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      +.+|++|| | ++-+|..+|..|++.|+ +|.+..|+
T Consensus         4 L~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~~~   39 (253)
T d1hxha_           4 LQGKVALVTGGASGVGLEVVKLLLGEGA-KVAFSDIN   39 (253)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            44665555 5 45699999999999998 69998764

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.68  E-value=0.22  Score=36.43  Aligned_cols=33  Identities=33%  Similarity=0.269  Sum_probs=26.2

Q ss_pred             ce-EEEEcC-ChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         70 GT-VIVLGA-GDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        70 ~~-VvViGg-G~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      +| ++|-|| +-+|..+|..|++.|+ +|.++.|+.
T Consensus         3 GKvalITGas~GIG~aia~~la~~Ga-~V~i~~r~~   37 (254)
T d2gdza1           3 GKVALVTGAAQGIGRAFAEALLLKGA-KVALVDWNL   37 (254)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCH
Confidence            45 555564 6699999999999998 699998753

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=89.57  E-value=0.2  Score=36.32  Aligned_cols=32  Identities=13%  Similarity=0.170  Sum_probs=27.5

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         71 TVIVLGA-GDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        71 ~VvViGg-G~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      ||+|.|| |++|..++..|...|. +|..+.|+.
T Consensus         3 KIlItGasGfiG~~l~~~L~~~g~-~Vi~~~r~~   35 (281)
T d1vl0a_           3 KILITGANGQLGREIQKQLKGKNV-EVIPTDVQD   35 (281)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSE-EEEEECTTT
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCC-EEEEeechh
Confidence            5899997 9999999999999986 688887653

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=89.54  E-value=0.36  Score=31.49  Aligned_cols=34  Identities=18%  Similarity=0.229  Sum_probs=27.7

Q ss_pred             ceEEEEcCC-----------hhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200         70 GTVIVLGAG-----------DTAFDCATSALRCGANKVLVVFRKGC  104 (183)
Q Consensus        70 ~~VvViGgG-----------~~g~e~A~~l~~~G~~~V~lv~r~~~  104 (183)
                      +||+|||+|           +.+..++..|.+.|. ++.|+...+.
T Consensus         5 kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~-~~IliN~NPe   49 (121)
T d1a9xa4           5 EKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGY-ETIMVNCNPE   49 (121)
T ss_dssp             CEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTC-EEEEECCCTT
T ss_pred             CEEEEECCCcCcccccchhhHHHHHHHHHHHhcCC-eEEEEecChh
Confidence            679999998           567788899999997 6888876554

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=89.53  E-value=0.19  Score=34.65  Aligned_cols=32  Identities=13%  Similarity=0.089  Sum_probs=28.5

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      .+|.+||-|.+|.-+|..|.+.|. +|+++.|.
T Consensus         3 ~nIg~IGlG~MG~~mA~~L~~~G~-~V~v~dr~   34 (176)
T d2pgda2           3 ADIALIGLAVMGQNLILNMNDHGF-VVCAFNRT   34 (176)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred             CcEEEEeEhHHHHHHHHHHHHCCC-eEEEEcCC
Confidence            459999999999999999999997 69988764

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=89.52  E-value=0.19  Score=36.48  Aligned_cols=34  Identities=32%  Similarity=0.476  Sum_probs=31.4

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      .|++++|+|-.|+-+|+.+.+.+.++++++.|.+
T Consensus        27 ~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~G   60 (222)
T d1vl6a1          27 VKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKG   60 (222)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTE
T ss_pred             cEEEEEChHHHHHHHHHHHHHhcccceEeeccee
Confidence            5699999999999999999999999999999864

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=89.47  E-value=0.2  Score=36.06  Aligned_cols=34  Identities=26%  Similarity=0.220  Sum_probs=28.9

Q ss_pred             ceEEEEc-CChhHHHHHHHHHHcCCceEEEEEeecC
Q psy16200         70 GTVIVLG-AGDTAFDCATSALRCGANKVLVVFRKGC  104 (183)
Q Consensus        70 ~~VvViG-gG~~g~e~A~~l~~~G~~~V~lv~r~~~  104 (183)
                      +||+|.| ++-+|..+|+.|++.|+ +|.++.|+..
T Consensus         3 gkVlITGas~GIG~aia~~l~~~G~-~V~~~~~~~~   37 (235)
T d1ooea_           3 GKVIVYGGKGALGSAILEFFKKNGY-TVLNIDLSAN   37 (235)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTE-EEEEEESSCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCch
Confidence            6798887 56699999999999998 6999988643

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.34  E-value=0.23  Score=36.58  Aligned_cols=34  Identities=35%  Similarity=0.465  Sum_probs=26.7

Q ss_pred             Ccce-EEEEc-CChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         68 LKGT-VIVLG-AGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        68 ~~~~-VvViG-gG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      +.+| ++|.| ++-+|..+|..|++.|+ +|.++.|+
T Consensus        12 L~GK~alITGassGIG~aiA~~la~~G~-~Vil~~r~   47 (269)
T d1xu9a_          12 LQGKKVIVTGASKGIGREMAYHLAKMGA-HVVVTARS   47 (269)
T ss_dssp             GTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence            4556 55556 44599999999999998 69999885

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.96  E-value=0.19  Score=34.92  Aligned_cols=35  Identities=20%  Similarity=0.048  Sum_probs=28.9

Q ss_pred             CcceEEEEcCC-hhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         68 LKGTVIVLGAG-DTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        68 ~~~~VvViGgG-~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      .+++|+|||-+ .+|.=+|..|.+.|+ .|++++..+
T Consensus        28 ~GK~vvVIGrS~iVG~Pla~lL~~~ga-TVt~~~~~~   63 (171)
T d1edza1          28 YGKKCIVINRSEIVGRPLAALLANDGA-TVYSVDVNN   63 (171)
T ss_dssp             TTCEEEEECCCTTTHHHHHHHHHTTSC-EEEEECSSE
T ss_pred             CCCEEEEECCccccHHHHHHHHHHCCC-EEEEecccc
Confidence            44669999966 479999999999998 799987643

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.84  E-value=0.23  Score=36.60  Aligned_cols=33  Identities=15%  Similarity=0.187  Sum_probs=26.1

Q ss_pred             cceEEEE--cCChhHHHHHHHHHHc-CCceEEEEEee
Q psy16200         69 KGTVIVL--GAGDTAFDCATSALRC-GANKVLVVFRK  102 (183)
Q Consensus        69 ~~~VvVi--GgG~~g~e~A~~l~~~-G~~~V~lv~r~  102 (183)
                      ++||+||  |++-+|.++|+.|++. |+ +|.+..|+
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g~-~Vi~~~r~   37 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFSG-DVVLTARD   37 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSS-EEEEEESS
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCC-EEEEEECC
Confidence            5789988  4556888899999886 76 79998875

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.84  E-value=0.58  Score=35.05  Aligned_cols=31  Identities=26%  Similarity=0.267  Sum_probs=27.7

Q ss_pred             ceEEEEc-CChhHHHHHHHHHHcCCceEEEEEe
Q psy16200         70 GTVIVLG-AGDTAFDCATSALRCGANKVLVVFR  101 (183)
Q Consensus        70 ~~VvViG-gG~~g~e~A~~l~~~G~~~V~lv~r  101 (183)
                      |||+|.| +|++|..++..|.+.|. +|+.+.+
T Consensus         3 kKILITG~tGfIGs~lv~~Ll~~g~-~V~~ld~   34 (346)
T d1ek6a_           3 EKVLVTGGAGYIGSHTVLELLEAGY-LPVVIDN   34 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTC-CEEEEEC
T ss_pred             CeEEEECCCcHHHHHHHHHHHHCcC-EEEEEEC
Confidence            7899996 89999999999999996 6999875

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=88.71  E-value=0.21  Score=34.98  Aligned_cols=34  Identities=12%  Similarity=-0.005  Sum_probs=29.2

Q ss_pred             CcceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         68 LKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        68 ~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      .+++|.|+|.|.+|..+|..|..+|. +|....+.
T Consensus        43 ~~~~vgiiG~G~IG~~va~~l~~fg~-~v~~~d~~   76 (188)
T d2naca1          43 EAMHVGTVAAGRIGLAVLRRLAPFDV-HLHYTDRH   76 (188)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGGTC-EEEEECSS
T ss_pred             cccceeeccccccchhhhhhhhccCc-eEEEEeec
Confidence            34569999999999999999999998 68888653

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=88.68  E-value=0.21  Score=34.29  Aligned_cols=30  Identities=33%  Similarity=0.267  Sum_probs=26.8

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEe
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFR  101 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r  101 (183)
                      ||-|||-|.+|..+|+.|.+.|. +|++..|
T Consensus         3 kIGvIGlG~MG~~ma~~L~~~G~-~V~~~dr   32 (178)
T d1pgja2           3 DVGVVGLGVMGANLALNIAEKGF-KVAVFNR   32 (178)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTC-CEEEECS
T ss_pred             EEEEEeehHHHHHHHHHHHHCCC-eEEEEEC
Confidence            48999999999999999999997 6988765

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.65  E-value=0.16  Score=41.48  Aligned_cols=32  Identities=13%  Similarity=0.125  Sum_probs=29.7

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEe
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFR  101 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r  101 (183)
                      .+|+|||.|.+|+|+|..|+..|..+++|+..
T Consensus        26 s~VlvvG~gglG~Ei~knLvl~GVg~itivD~   57 (529)
T d1yova1          26 AHVCLINATATGTEILKNLVLPGIGSFTIIDG   57 (529)
T ss_dssp             CEEEECCCSHHHHHHHHHHHTTTCSEEEEECC
T ss_pred             CCEEEECCCHHHHHHHHHHHHhcCCEEEEEcC
Confidence            46999999999999999999999989999975

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=88.64  E-value=0.29  Score=36.28  Aligned_cols=33  Identities=21%  Similarity=0.236  Sum_probs=28.8

Q ss_pred             ceEEEEc-CChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         70 GTVIVLG-AGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        70 ~~VvViG-gG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      |+|+|.| .|++|..++..|.+.|. +|+.+.|+.
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~-~V~~~~r~~   34 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGY-RVHGLVARR   34 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcC-EEEEEECCC
Confidence            5699997 69999999999999997 699998864

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.54  E-value=0.33  Score=33.06  Aligned_cols=35  Identities=26%  Similarity=0.282  Sum_probs=28.2

Q ss_pred             CCcceEEEEcC-ChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         67 ILKGTVIVLGA-GDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        67 ~~~~~VvViGg-G~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      ..+++|+|.|+ |.+|.-+...+..+|+ +|..+.++
T Consensus        27 ~~g~~VlV~Ga~G~vG~~aiq~a~~~G~-~vi~~~~~   62 (174)
T d1yb5a2          27 KAGESVLVHGASGGVGLAACQIARAYGL-KILGTAGT   62 (174)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             CCCCEEEEEeccccccccccccccccCc-cccccccc
Confidence            35567999996 9999999998989998 58777653

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=88.49  E-value=0.18  Score=33.95  Aligned_cols=31  Identities=10%  Similarity=0.148  Sum_probs=26.8

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         71 TVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        71 ~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      |+.+||+|.+|.-+|..|.+.|. ++++..|+
T Consensus         2 kIg~IG~G~mG~al~~~l~~~~~-~i~v~~r~   32 (152)
T d2ahra2           2 KIGIIGVGKMASAIIKGLKQTPH-ELIISGSS   32 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSSC-EEEEECSS
T ss_pred             EEEEEeccHHHHHHHHHHHhCCC-eEEEEcCh
Confidence            58999999999999999988885 79887664

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=87.99  E-value=0.31  Score=34.05  Aligned_cols=34  Identities=15%  Similarity=0.038  Sum_probs=29.5

Q ss_pred             CcceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         68 LKGTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        68 ~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      .+++|.|+|-|.+|..+|..+..+|+ +|....+.
T Consensus        43 ~~~~vgiiG~G~IG~~va~~l~~fg~-~v~~~d~~   76 (188)
T d1sc6a1          43 RGKKLGIIGYGHIGTQLGILAESLGM-YVYFYDIE   76 (188)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             cceEEEEeecccchhhhhhhcccccc-eEeecccc
Confidence            34569999999999999999999998 68888764

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=87.87  E-value=0.38  Score=32.17  Aligned_cols=30  Identities=23%  Similarity=0.234  Sum_probs=24.7

Q ss_pred             eEEEEc-CChhHHHHHHHHHHcCC-ceEEEEE
Q psy16200         71 TVIVLG-AGDTAFDCATSALRCGA-NKVLVVF  100 (183)
Q Consensus        71 ~VvViG-gG~~g~e~A~~l~~~G~-~~V~lv~  100 (183)
                      ||.||| +|.+|..+|..+...+. .++.|+.
T Consensus         2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~D   33 (142)
T d1o6za1           2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVD   33 (142)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred             eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEe
Confidence            699999 69999999999988763 3577764

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.28  E-value=0.37  Score=35.88  Aligned_cols=31  Identities=23%  Similarity=0.251  Sum_probs=27.4

Q ss_pred             ceEEEEc-CChhHHHHHHHHHHcCCceEEEEEe
Q psy16200         70 GTVIVLG-AGDTAFDCATSALRCGANKVLVVFR  101 (183)
Q Consensus        70 ~~VvViG-gG~~g~e~A~~l~~~G~~~V~lv~r  101 (183)
                      |||+|.| .|++|..++..|.+.|. +|+.+.+
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~~g~-~V~~~d~   33 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMMDGH-EVTVVDN   33 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcC-EEEEEeC
Confidence            6799997 79999999999999997 6998875

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.21  E-value=0.37  Score=36.07  Aligned_cols=33  Identities=24%  Similarity=0.308  Sum_probs=28.1

Q ss_pred             ceE-EEEc-CChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         70 GTV-IVLG-AGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        70 ~~V-vViG-gG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      ||| +|.| .|++|..++..|.+.|. +|+.+.|+.
T Consensus         1 kKI~LVTG~tGfIG~~l~~~Ll~~g~-~V~~i~r~~   35 (347)
T d1t2aa_           1 RNVALITGITGQDGSYLAEFLLEKGY-EVHGIVRRS   35 (347)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCC
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCcC-EEEEEECCC
Confidence            568 6776 78999999999999997 699998864

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=86.99  E-value=0.42  Score=34.71  Aligned_cols=31  Identities=29%  Similarity=0.214  Sum_probs=26.8

Q ss_pred             CcceEEEEcCChhHHHHHHHHHHcCCceEEEE
Q psy16200         68 LKGTVIVLGAGDTAFDCATSALRCGANKVLVV   99 (183)
Q Consensus        68 ~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv   99 (183)
                      -+++|+|-|-|.+|..+|++|.+.|+ +|..+
T Consensus        38 ~g~~v~IqG~GnVG~~~a~~L~~~Ga-kvv~~   68 (230)
T d1leha1          38 EGLAVSVQGLGNVAKALCKKLNTEGA-KLVVT   68 (230)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEee
Confidence            34569999999999999999999998 57665

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=86.82  E-value=0.32  Score=32.85  Aligned_cols=30  Identities=23%  Similarity=0.235  Sum_probs=23.0

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHcC--CceEEEEE
Q psy16200         71 TVIVLGA-GDTAFDCATSALRCG--ANKVLVVF  100 (183)
Q Consensus        71 ~VvViGg-G~~g~e~A~~l~~~G--~~~V~lv~  100 (183)
                      ||+|||+ |++|.|+.+.|.++.  ..++..+.
T Consensus         3 kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~   35 (154)
T d2gz1a1           3 TVAVVGATGAVGAQMIKMLEESTLPIDKIRYLA   35 (154)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEE
T ss_pred             EEEEECCCcHHHHHHHHHHHcCCCCceEEEEec
Confidence            6999996 999999999998874  22444443

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.75  E-value=0.41  Score=34.82  Aligned_cols=35  Identities=31%  Similarity=0.277  Sum_probs=26.9

Q ss_pred             CcceEEEE-c-CChhHHHHHHHHHH---cCCceEEEEEeec
Q psy16200         68 LKGTVIVL-G-AGDTAFDCATSALR---CGANKVLVVFRKG  103 (183)
Q Consensus        68 ~~~~VvVi-G-gG~~g~e~A~~l~~---~G~~~V~lv~r~~  103 (183)
                      +.+||+|| | ++-+|..+|..|++   .|+ +|.++.|+.
T Consensus         4 L~gKvalITGas~GIG~aiA~~lA~~~~~G~-~Vv~~~r~~   43 (259)
T d1oaaa_           4 LGCAVCVLTGASRGFGRALAPQLARLLSPGS-VMLVSARSE   43 (259)
T ss_dssp             CBSEEEEESSCSSHHHHHHHHHHHTTBCTTC-EEEEEESCH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHhcccCCC-EEEEEECCH
Confidence            56888888 4 34688899999987   577 699998753

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=86.21  E-value=0.37  Score=33.55  Aligned_cols=33  Identities=27%  Similarity=0.163  Sum_probs=28.0

Q ss_pred             CcceEEEEcCChhHHHHHHHHHHcCCceEEEEEe
Q psy16200         68 LKGTVIVLGAGDTAFDCATSALRCGANKVLVVFR  101 (183)
Q Consensus        68 ~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r  101 (183)
                      .++++.|+|.|.+|-.+|..+..+|+ +|....+
T Consensus        43 ~~k~vgiiG~G~IG~~va~~~~~fg~-~v~~~d~   75 (184)
T d1ygya1          43 FGKTVGVVGLGRIGQLVAQRIAAFGA-YVVAYDP   75 (184)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECT
T ss_pred             cceeeeeccccchhHHHHHHhhhccc-eEEeecC
Confidence            34569999999999999999999998 6877654

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=85.50  E-value=0.8  Score=30.01  Aligned_cols=35  Identities=20%  Similarity=0.324  Sum_probs=27.8

Q ss_pred             cceEEEEcCCh-----------hHHHHHHHHHHcCCceEEEEEeecC
Q psy16200         69 KGTVIVLGAGD-----------TAFDCATSALRCGANKVLVVFRKGC  104 (183)
Q Consensus        69 ~~~VvViGgG~-----------~g~e~A~~l~~~G~~~V~lv~r~~~  104 (183)
                      .+||+|+|+|.           .+..++..|.+.|. ++.++...+.
T Consensus         7 ~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~-~~iliN~NP~   52 (127)
T d1a9xa3           7 IKSILILGAGPIVIGQACEFDYSGAQACKALREEGY-RVINVNSNPA   52 (127)
T ss_dssp             CCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTC-EEEEECSCTT
T ss_pred             CCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCC-eEEEecCchH
Confidence            36799999974           56778889999997 6888876543

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=85.44  E-value=0.65  Score=29.91  Aligned_cols=47  Identities=15%  Similarity=0.288  Sum_probs=32.0

Q ss_pred             ceEEEEcCChhHHHHHHHHHHcCCceEEEEEeecCCcCCCCHHHHHHHHHcCcEEEeC
Q psy16200         70 GTVIVLGAGDTAFDCATSALRCGANKVLVVFRKGCTNIRAVPEEVQLAWEEKCEFLPF  127 (183)
Q Consensus        70 ~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~~~~~~~~~~~~~~~~~~~gv~~~~~  127 (183)
                      |+++|+|.|..|.++++.|.  +. +|.++...+.        ....+...|+.++.+
T Consensus         1 kHivI~G~g~~g~~l~~~L~--~~-~i~vi~~d~~--------~~~~~~~~~~~~i~G   47 (129)
T d2fy8a1           1 RHVVICGWSESTLECLRELR--GS-EVFVLAEDEN--------VRKKVLRSGANFVHG   47 (129)
T ss_dssp             CCEEEESCCHHHHHHHHTSC--GG-GEEEEESCTT--------HHHHHHHTTCEEEES
T ss_pred             CEEEEECCCHHHHHHHHHHc--CC-CCEEEEcchH--------HHHHHHhcCcccccc
Confidence            35999999999999999984  33 5777754321        223445667776655

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=85.33  E-value=0.51  Score=34.40  Aligned_cols=31  Identities=19%  Similarity=0.214  Sum_probs=25.7

Q ss_pred             EEEE-c-CChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         72 VIVL-G-AGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        72 VvVi-G-gG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      |+|| | ++-+|..+|..|++.|+ +|.+..++.
T Consensus         4 VAlITGas~GIG~aiA~~la~~Ga-~V~i~~~~~   36 (284)
T d1e7wa_           4 VALVTGAAKRLGRSIAEGLHAEGY-AVCLHYHRS   36 (284)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSC
T ss_pred             EEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCC
Confidence            7777 4 46799999999999998 699988754

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=85.32  E-value=0.48  Score=32.28  Aligned_cols=36  Identities=22%  Similarity=0.187  Sum_probs=28.6

Q ss_pred             CCcceEEEEcC-ChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         67 ILKGTVIVLGA-GDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        67 ~~~~~VvViGg-G~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      ..+++|+|.|+ |.+|.-+...+...|+ +|..+.+++
T Consensus        26 ~~g~~VlI~ga~G~vG~~aiqlak~~G~-~vi~~~~~~   62 (171)
T d1iz0a2          26 RPGEKVLVQAAAGALGTAAVQVARAMGL-RVLAAASRP   62 (171)
T ss_dssp             CTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSG
T ss_pred             CCCCEEEEEeccccchhhhhhhhccccc-ccccccccc
Confidence            35567999995 9999999998989998 587776643

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=85.18  E-value=0.7  Score=34.83  Aligned_cols=57  Identities=9%  Similarity=0.125  Sum_probs=35.8

Q ss_pred             HHHHHcC-cEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccc
Q psy16200        115 QLAWEEK-CEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGS  177 (183)
Q Consensus       115 ~~~~~~g-v~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~  177 (183)
                      ..+.+.| +++++++.+.+|..++++...+.+...  +.++.    .+.++++.|+.||+|.|.
T Consensus       226 ~~a~~~gn~~i~~~t~V~~I~~~~~g~~~v~v~~~--~~~~~----~~~~~~i~Ak~VVLaAGa  283 (367)
T d1n4wa1         226 AAALGTGKVTIQTLHQVKTIRQTKDGGYALTVEQK--DTDGK----LLATKEISCRYLFLGAGS  283 (367)
T ss_dssp             HHHHHTTSEEEEESEEEEEEEECTTSSEEEEEEEE--CTTCC----EEEEEEEEEEEEEECSHH
T ss_pred             HHHHhCCCeEEECCCEEEEEEEcCCCCEEEEEEEE--CCCCc----ceeEEEEecCEEEEecch
Confidence            3445565 999999999999764443333444321  11111    223567899999999984

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=85.09  E-value=0.47  Score=36.05  Aligned_cols=33  Identities=21%  Similarity=0.235  Sum_probs=27.0

Q ss_pred             ceEEEEc-CChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         70 GTVIVLG-AGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        70 ~~VvViG-gG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      |+|+|.| .|++|..++..|.+.|. +|+.+.|+.
T Consensus         2 K~vLITGatGfiGs~lv~~Ll~~g~-~V~~~~r~~   35 (357)
T d1db3a_           2 KVALITGVTGQDGSYLAEFLLEKGY-EVHGIKRRA   35 (357)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEECC--
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcC-EEEEEECCC
Confidence            4466887 89999999999999996 799998753

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=85.07  E-value=0.5  Score=36.15  Aligned_cols=31  Identities=23%  Similarity=0.269  Sum_probs=26.9

Q ss_pred             cceEEEEc-CChhHHHHHHHHHHcCCceEEEEE
Q psy16200         69 KGTVIVLG-AGDTAFDCATSALRCGANKVLVVF  100 (183)
Q Consensus        69 ~~~VvViG-gG~~g~e~A~~l~~~G~~~V~lv~  100 (183)
                      ++||+|.| +|++|..++..|.+.|. +|+.+.
T Consensus         1 g~kILVTGatGfiG~~lv~~Ll~~g~-~V~~iD   32 (393)
T d1i24a_           1 GSRVMVIGGDGYCGWATALHLSKKNY-EVCIVD   32 (393)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcC-EEEEEe
Confidence            46799997 89999999999999997 699885

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.03  E-value=0.62  Score=33.06  Aligned_cols=35  Identities=29%  Similarity=0.411  Sum_probs=29.3

Q ss_pred             cceEEEEc-CChhHHHHHHHHHHcCC-ceEEEEEeec
Q psy16200         69 KGTVIVLG-AGDTAFDCATSALRCGA-NKVLVVFRKG  103 (183)
Q Consensus        69 ~~~VvViG-gG~~g~e~A~~l~~~G~-~~V~lv~r~~  103 (183)
                      .++|+|.| .|++|..++..|.+.|. .+|+++.|++
T Consensus        14 ~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~   50 (232)
T d2bkaa1          14 NKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRK   50 (232)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecCh
Confidence            35699997 79999999999998883 3699999874

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=84.99  E-value=0.51  Score=35.50  Aligned_cols=34  Identities=26%  Similarity=0.225  Sum_probs=27.7

Q ss_pred             cceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      +++|+|=|-|++|.-+|+.|.+.|++-|.+....
T Consensus        36 gktvaIqGfGnVG~~~A~~L~e~Gakvv~vsD~~   69 (293)
T d1hwxa1          36 DKTFAVQGFGNVGLHSMRYLHRFGAKCVAVGESD   69 (293)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEEccc
Confidence            3569999999999999999999999645555443

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=84.93  E-value=0.65  Score=30.91  Aligned_cols=31  Identities=16%  Similarity=0.141  Sum_probs=23.4

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHcC--CceEEEEEe
Q psy16200         71 TVIVLGA-GDTAFDCATSALRCG--ANKVLVVFR  101 (183)
Q Consensus        71 ~VvViGg-G~~g~e~A~~l~~~G--~~~V~lv~r  101 (183)
                      +|.|||+ |++|.|+.+.|.+++  ..++..+..
T Consensus         4 nVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s   37 (144)
T d2hjsa1           4 NVAVVGATGSVGEALVGLLDERDFPLHRLHLLAS   37 (144)
T ss_dssp             CEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEEC
T ss_pred             EEEEECCCCHHHHHHHHHHHhcCCCceEEEEEee
Confidence            5999986 999999999997543  234666544

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=84.89  E-value=0.46  Score=34.69  Aligned_cols=31  Identities=29%  Similarity=0.243  Sum_probs=26.2

Q ss_pred             cceEEEEcCChhHHHHHHHHHHcCCceEEEEE
Q psy16200         69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVF  100 (183)
Q Consensus        69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~  100 (183)
                      +++|+|=|-|.+|..+|+.|.+.|++ |.-+.
T Consensus        31 g~~v~IqGfGnVG~~~a~~L~~~Gak-vv~vs   61 (242)
T d1v9la1          31 GKTVAIQGMGNVGRWTAYWLEKMGAK-VIAVS   61 (242)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCE-EEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCe-EEEee
Confidence            45699999999999999999999985 54443

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=84.50  E-value=0.56  Score=34.54  Aligned_cols=32  Identities=19%  Similarity=0.178  Sum_probs=26.0

Q ss_pred             ceEEEEc-CChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         70 GTVIVLG-AGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        70 ~~VvViG-gG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      |||+|.| .|++|-.++..|.+.|. .|.++.++
T Consensus         3 kkIlITG~tGfiG~~l~~~L~~~g~-~vi~~~~~   35 (315)
T d1e6ua_           3 QRVFIAGHRGMVGSAIRRQLEQRGD-VELVLRTR   35 (315)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTCTT-EEEECCCT
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCcC-EEEEecCc
Confidence            5699997 89999999999999986 56655444

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=84.43  E-value=0.44  Score=32.99  Aligned_cols=29  Identities=24%  Similarity=0.192  Sum_probs=24.0

Q ss_pred             ceEEEEc-CChhHHHHHHHHHHcCCceEEEE
Q psy16200         70 GTVIVLG-AGDTAFDCATSALRCGANKVLVV   99 (183)
Q Consensus        70 ~~VvViG-gG~~g~e~A~~l~~~G~~~V~lv   99 (183)
                      .+|+|.| .|++|..++..|.+.|. +|+++
T Consensus         4 ~tVlVtGatG~iG~~l~~~Ll~~g~-~v~v~   33 (252)
T d2q46a1           4 PTVLVTGASGRTGQIVYKKLKEGSD-KFVAK   33 (252)
T ss_dssp             CEEEEESTTSTTHHHHHHHHHHTTT-TCEEE
T ss_pred             CEEEEECCccHHHHHHHHHHHHCCC-cEEEE
Confidence            4699998 69999999999999986 45544

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=84.37  E-value=0.51  Score=35.48  Aligned_cols=32  Identities=22%  Similarity=0.183  Sum_probs=26.8

Q ss_pred             ceEEEEc-CChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         70 GTVIVLG-AGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        70 ~~VvViG-gG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      +||+|.| .|++|..++..|.+.|. +|+++.+.
T Consensus         3 mkILVTGgtGfIGs~lv~~L~~~g~-~v~v~~~d   35 (346)
T d1oc2a_           3 KNIIVTGGAGFIGSNFVHYVYNNHP-DVHVTVLD   35 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHHCT-TCEEEEEE
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC-CeEEEEEe
Confidence            5799997 89999999999999986 57766553

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=84.11  E-value=0.65  Score=35.03  Aligned_cols=33  Identities=21%  Similarity=0.079  Sum_probs=28.4

Q ss_pred             ceEEEEc-CChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         70 GTVIVLG-AGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        70 ~~VvViG-gG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      -||+|.| .|++|..++..|.+.|. +|+.+.++.
T Consensus        16 MKILVTGgsGfIGs~lv~~L~~~g~-~V~~~d~~~   49 (363)
T d2c5aa1          16 LKISITGAGGFIASHIARRLKHEGH-YVIASDWKK   49 (363)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcC-EEEEEeCCC
Confidence            4699997 89999999999999996 799987643

>d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=83.79  E-value=0.64  Score=35.08  Aligned_cols=32  Identities=13%  Similarity=0.240  Sum_probs=25.1

Q ss_pred             ceEEEE-cCC---hhHHHHHHHHHHcCCceEEEEEee
Q psy16200         70 GTVIVL-GAG---DTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        70 ~~VvVi-GgG---~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      +||++| |+|   -+|..+|+.|++.|+ +|.+..+.
T Consensus         2 ~kVAlITGaa~s~GIG~aiA~~la~~GA-~V~i~~~~   37 (329)
T d1uh5a_           2 EDICFIAGIGDTNGYGWGIAKELSKRNV-KIIFGIWP   37 (329)
T ss_dssp             CCEEEEECCSSSSSHHHHHHHHHHHTTC-EEEEEECG
T ss_pred             CcEEEEeCCCCCChHHHHHHHHHHHcCC-EEEEEeCc
Confidence            455555 655   599999999999998 69888764

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.75  E-value=1.3  Score=33.14  Aligned_cols=29  Identities=24%  Similarity=0.284  Sum_probs=24.7

Q ss_pred             EEEEc-CChhHHHHHHHHHHcCCceEEEEEe
Q psy16200         72 VIVLG-AGDTAFDCATSALRCGANKVLVVFR  101 (183)
Q Consensus        72 VvViG-gG~~g~e~A~~l~~~G~~~V~lv~r  101 (183)
                      |+|.| +|++|..++..|.+.|. +|+.+.+
T Consensus         4 ILVTGatGfIG~~lv~~Ll~~g~-~V~~~d~   33 (347)
T d1z45a2           4 VLVTGGAGYIGSHTVVELIENGY-DCVVADN   33 (347)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTC-EEEEEEC
T ss_pred             EEEeCCCcHHHHHHHHHHHHCcC-eEEEEEC
Confidence            66665 78999999999999997 6998865

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.71  E-value=0.55  Score=35.11  Aligned_cols=32  Identities=34%  Similarity=0.422  Sum_probs=24.2

Q ss_pred             cceEEEEcCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      +++|+-||+| +|. ++..+++.|+++|+.++.+
T Consensus        36 ~~~VLDiGcG-~G~-lsl~aa~~Ga~~V~aid~s   67 (311)
T d2fyta1          36 DKVVLDVGCG-TGI-LSMFAAKAGAKKVLGVDQS   67 (311)
T ss_dssp             TCEEEEETCT-TSH-HHHHHHHTTCSEEEEEESS
T ss_pred             cCEEEEECCC-CCH-HHHHHHHcCCCEEEEEeCH
Confidence            3459999999 444 4667888898889999754

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=83.62  E-value=0.81  Score=34.16  Aligned_cols=34  Identities=18%  Similarity=0.111  Sum_probs=29.1

Q ss_pred             CcceEEEEc-CChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         68 LKGTVIVLG-AGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        68 ~~~~VvViG-gG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      -+|+++|.| .|++|..++..|.+.|. +|..+.|.
T Consensus        15 ~~k~iLVTG~tGfIGs~lv~~L~~~g~-~V~~~d~~   49 (341)
T d1sb8a_          15 QPKVWLITGVAGFIGSNLLETLLKLDQ-KVVGLDNF   49 (341)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCcC-EEEEEECC
Confidence            457799986 89999999999999997 69998763

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.57  E-value=0.97  Score=32.99  Aligned_cols=44  Identities=14%  Similarity=0.059  Sum_probs=32.9

Q ss_pred             HHcCcEEEeCCcceEEEccCCcEEEEEEEEeeecCCCCeecCCCceEEEECCEEEEcccc
Q psy16200        118 WEEKCEFLPFMSPVQVDVKDNKIAGMQFNRTEQNEKGEWVEDEEQRIKLKANYIISAFGS  177 (183)
Q Consensus       118 ~~~gv~~~~~~~~~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~g~~~~i~~D~Vi~a~G~  177 (183)
                      .+.|.++++++.+.+|..+++.++ ++.             .+|+  ++.||.||+|++.
T Consensus       218 ~~~g~~i~~~~~v~~I~~~~~~v~-v~~-------------~~g~--~~~ad~vI~a~p~  261 (383)
T d2v5za1         218 DLLGDRVKLERPVIYIDQTRENVL-VET-------------LNHE--MYEAKYVISAIPP  261 (383)
T ss_dssp             HHHGGGEEESCCEEEEECSSSSEE-EEE-------------TTSC--EEEESEEEECSCG
T ss_pred             HHcCCeEEecCcceEEEecCCeEE-EEE-------------CCCC--EEECCEEEECCCH
Confidence            456899999999999987666665 433             2343  6789999999863

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=83.35  E-value=0.7  Score=30.85  Aligned_cols=31  Identities=23%  Similarity=0.108  Sum_probs=23.9

Q ss_pred             eEEEEc-CChhHHHHHHHHHH-cC-CceEEEEEe
Q psy16200         71 TVIVLG-AGDTAFDCATSALR-CG-ANKVLVVFR  101 (183)
Q Consensus        71 ~VvViG-gG~~g~e~A~~l~~-~G-~~~V~lv~r  101 (183)
                      ||.||| +|.+|..+|..|.. .+ +.++.++..
T Consensus         2 KV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~   35 (145)
T d2cmda1           2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDI   35 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECS
T ss_pred             EEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecc
Confidence            699999 59999999988754 33 357888853

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=83.13  E-value=0.65  Score=32.50  Aligned_cols=32  Identities=16%  Similarity=0.045  Sum_probs=27.6

Q ss_pred             cceEEEEcCChhHHHHHHHHHHcCCceEEEEEe
Q psy16200         69 KGTVIVLGAGDTAFDCATSALRCGANKVLVVFR  101 (183)
Q Consensus        69 ~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r  101 (183)
                      ++++.|||.|.+|..+|..+..+|. +|....+
T Consensus        47 g~tvgIiG~G~IG~~va~~l~~fg~-~v~~~d~   78 (191)
T d1gdha1          47 NKTLGIYGFGSIGQALAKRAQGFDM-DIDYFDT   78 (191)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTC-EEEEECS
T ss_pred             ccceEEeecccchHHHHHHHHhhcc-ccccccc
Confidence            4569999999999999999999998 5877654

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=83.06  E-value=0.59  Score=34.40  Aligned_cols=34  Identities=26%  Similarity=0.299  Sum_probs=28.0

Q ss_pred             CcceEEEEcCChhHHHHHHHHHHcCCceEEEEEe
Q psy16200         68 LKGTVIVLGAGDTAFDCATSALRCGANKVLVVFR  101 (183)
Q Consensus        68 ~~~~VvViGgG~~g~e~A~~l~~~G~~~V~lv~r  101 (183)
                      -+++|+|=|-|++|.-+|++|.+.|++-|.+.+.
T Consensus        35 ~g~~v~IQGfGnVG~~~a~~L~e~GakvvavsD~   68 (255)
T d1bgva1          35 VGKTVALAGFGNVAWGAAKKLAELGAKAVTLSGP   68 (255)
T ss_dssp             TTCEEEECCSSHHHHHHHHHHHHHTCEEEEEEET
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Confidence            3467999999999999999999999964555544

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=82.59  E-value=0.86  Score=33.72  Aligned_cols=33  Identities=18%  Similarity=0.226  Sum_probs=28.0

Q ss_pred             ceEEEEc-CChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         70 GTVIVLG-AGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        70 ~~VvViG-gG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      |+++|.| .|++|..++..|.+.|. +|+.+.|..
T Consensus         2 k~~LVTGatGfiG~~lv~~Ll~~g~-~V~~~~r~~   35 (339)
T d1n7ha_           2 KIALITGITGQDGSYLTEFLLGKGY-EVHGLIRRS   35 (339)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCC
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCcC-EEEEEECCC
Confidence            4477776 89999999999999997 699998853

>d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.55  E-value=0.65  Score=34.38  Aligned_cols=33  Identities=15%  Similarity=0.223  Sum_probs=25.9

Q ss_pred             ceEEEE-c-CChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         70 GTVIVL-G-AGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        70 ~~VvVi-G-gG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      +||++| | ++-+|..+|..|++.|+ +|.++.+..
T Consensus         2 kkVvlITGassGIG~a~A~~la~~Ga-~v~~v~~~~   36 (285)
T d1jtva_           2 RTVVLITGCSSGIGLHLAVRLASDPS-QSFKVYATL   36 (285)
T ss_dssp             CEEEEESCCSSHHHHHHHHHHHTCTT-CCEEEEEEE
T ss_pred             CCEEEEccCCCHHHHHHHHHHHHCCC-CeEEEEEec
Confidence            678877 4 55688899999999998 588777654

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=82.39  E-value=0.87  Score=27.01  Aligned_cols=35  Identities=23%  Similarity=0.354  Sum_probs=27.6

Q ss_pred             CcceEEEEcC-ChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         68 LKGTVIVLGA-GDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        68 ~~~~VvViGg-G~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      .+++|+|.|| |-+|.-....+...|+ +|..+.+++
T Consensus        31 ~~~~vlI~gasGgVG~~aiQlak~~G~-~Vi~~t~s~   66 (77)
T d1o8ca2          31 QDGEIVVTGASGGVGSTAVALLHKLGY-QVVAVSGRE   66 (77)
T ss_dssp             GGCEEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCG
T ss_pred             CCCcEEEEeCCCcHHHHHHHHHHHcCC-eEEEEECCH
Confidence            4456888865 8899998888889998 588887654

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=82.01  E-value=0.86  Score=32.69  Aligned_cols=31  Identities=26%  Similarity=0.378  Sum_probs=25.3

Q ss_pred             EEEE-c-CChhHHHHHHHHHHcCCceEEEEEeec
Q psy16200         72 VIVL-G-AGDTAFDCATSALRCGANKVLVVFRKG  103 (183)
Q Consensus        72 VvVi-G-gG~~g~e~A~~l~~~G~~~V~lv~r~~  103 (183)
                      |+|| | ++-+|..+|..|++.|+ +|.+..|+.
T Consensus         3 vAlVTGas~GIG~aia~~la~~G~-~Vvi~~r~~   35 (266)
T d1mxha_           3 AAVITGGARRIGHSIAVRLHQQGF-RVVVHYRHS   35 (266)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSC
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCc
Confidence            5666 4 55599999999999998 699999864

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=81.42  E-value=0.94  Score=34.35  Aligned_cols=31  Identities=13%  Similarity=0.255  Sum_probs=24.6

Q ss_pred             eEEEEc-CChhHHHHHHHHHHcCCceEEEEEe
Q psy16200         71 TVIVLG-AGDTAFDCATSALRCGANKVLVVFR  101 (183)
Q Consensus        71 ~VvViG-gG~~g~e~A~~l~~~G~~~V~lv~r  101 (183)
                      ||+|.| +|++|..++..|.+.|.+.|..+.+
T Consensus         2 kILItG~tGfIGs~l~~~L~~~g~~vv~~~d~   33 (361)
T d1kewa_           2 KILITGGAGFIGSAVVRHIIKNTQDTVVNIDK   33 (361)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHHCSCEEEEEEC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCCEEEEEeC
Confidence            588886 8999999999999999754544543

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=81.40  E-value=0.8  Score=32.98  Aligned_cols=33  Identities=12%  Similarity=0.197  Sum_probs=23.5

Q ss_pred             ceEEEE-c-CChhHHHHHHHHHHcCCc------eEEEEEee
Q psy16200         70 GTVIVL-G-AGDTAFDCATSALRCGAN------KVLVVFRK  102 (183)
Q Consensus        70 ~~VvVi-G-gG~~g~e~A~~l~~~G~~------~V~lv~r~  102 (183)
                      |+|++| | ++-+|..+|..|++.|++      .|.+..|+
T Consensus         1 K~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~   41 (240)
T d2bd0a1           1 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRT   41 (240)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESC
T ss_pred             CCEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCC
Confidence            466655 5 456999999999999984      16665553

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=80.28  E-value=1.1  Score=32.29  Aligned_cols=30  Identities=30%  Similarity=0.386  Sum_probs=24.3

Q ss_pred             EEEE--cCChhHHHHHHHHHHcCCceEEEEEee
Q psy16200         72 VIVL--GAGDTAFDCATSALRCGANKVLVVFRK  102 (183)
Q Consensus        72 VvVi--GgG~~g~e~A~~l~~~G~~~V~lv~r~  102 (183)
                      |++|  |++-+|..+|..|++.|+ +|.+..++
T Consensus         3 V~lITGas~GIG~a~a~~la~~Ga-~V~i~~~~   34 (244)
T d1edoa_           3 VVVVTGASRGIGKAIALSLGKAGC-KVLVNYAR   34 (244)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            6666  466799999999999998 69887654