Psyllid ID: psy16233

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460----
MLNIEIGLRVIRGPDWKWLDEDGGEGGLGTVVAVKSNVVSVIWDLGNKSSCYRVGSENAYDLQVYDSGPVGIKHETISCDACQDERSCIVGTRYSCIECSNYDLCASCYHGDEHDITHAFYRVDTPTSSTASLPPRRLSKKIYVRGFSIGAKVSRGLNWEWENQDGGPGKTGRIISIEDGKVGKSYRSVAKVLWSIGKENIYRIGSYGKVDLKCVGSGASSMVYKSHLPVLGQTISTGYIFRRGDRVKVITDAKTLQHVQESSKGGWTPQLLNFLGHTGIVHRVTEQTLVRVRFENCDNKWTFDPRALTKVDPFVAGDFVYFIPDELSAKEHLKGHGEWIAAMAGDLGDIGIVIKVYEDKDVRVAFRKNTWTLSSKCLKLIKSNSLSDSTSLEITYRDYLLPFLNSQVNASTQSAPLLNSESPPDVVEEVEAVMREVVRGNPSAVKAFLENNANLIDCPVLGGK
ccccccccEEEEccccccccccccccccEEEEEEEccEEEEEEccccccccccccccccccccccccccccccccccccccccccccEEEEcEEEEcccccccccccccccccccccccEEEEccccccccccccccccccEEEEccccccEEcccccccccccccccccccEEEEEcccccccccccEEEEEEcccccEEEEEccccEEEEEEEEcccccccccccccccccccccccEEEcccEEEEEccHHHHHHHHHHccccccHHHHHccccEEEEEEEEccccEEEEEccccccEEEcccccccccccccccEEEEcccHHHHHHHHHcccHHHHHHHHHcccccEEEEEcccccEEEEEcccEEEEEcccEEEEccccccccccHHHHcccccccccccccccccccccccccccccccHHcHHHHHHHHHcccHHHHHHHHHHccccEEEEccccc
ccEEEcccEEEEccccEccccccccccEEEEEEccccEEEEEEcccccccEEEEcccccEEEEEEccccccccccccEEccccccccccccEEEEEEccccccccHHHEcccccccccEEEEEEcccccccccccccccccccccccccccEEEEccccccccccccccccEEEEEEcccccccccccEEEEEEccccEEEEEEcccccEEEEEEccccccccccccccccccccccccccccccEEEEEccHHHHHHHHHcccccccHHHHHHHccccEEEEEcccccEEEEEcccccEEEEccHHEEEccccccccEEEEcccHHHHHHHHcccccHHHHHHHHHccccEEEEEEccccEEEEEcccEEEEccHHEEEccccccccccHHHHHHHcccccccccccHHHHHHHHHHHccccccccccHHHHHHHHHcccHHHHHHHHHHcccHcccEccccc
mlnieiglrvirgpdwkwldedggegglGTVVAVKSNVVSVIWDlgnksscyrvgsenaydlqvydsgpvgikhetiscdacqderscivgtrysciecsnydlcascyhgdehdithafyrvdtptsstaslpprrlskkIYVRGFSIGakvsrglnwewenqdggpgktgriisiedgkvgkSYRSVAKVLWSIGKeniyrigsygkvdlkcvgsgassmvykshlpvlgqtistgyifrrgdrvkvitDAKTLQHvqesskggwtpqlLNFLGHTGIVHRVTEQTLVRVRFEncdnkwtfdpraltkvdpfvagdfvyfipdelsAKEHLKGHGEWIAAMAGDLGDIGIVIKVYEDKDVRVAFRKNTWTLSSKCLKliksnslsdstsleityrdyllpflnsqvnastqsapllnsesppdVVEEVEAVMREVVRGNPSAVKAFLENnanlidcpvlggk
mlnieiglrvirgpdwkwlDEDGGEGGLGTVVAVKSNVVSVIWDLGNKSSCYRVGSENAYDLQVYDSGPVGIKHETISCDACQDERSCIVGTRYSCIECSNYDLCASCYHGDEHDITHAFYRVDTptsstaslpprrlskkiyVRGFSIgakvsrglnwewenqdggpgktgriisiedgkvgksYRSVAKVLWSIGkeniyrigsyGKVDLKCVGSGASSMVYKSHLPVLGQTISTGYIFRRGDRVKVITDAKTLqhvqesskggwtPQLLNFLGHTGIVHRVTEQTLVRVRFENCdnkwtfdpraltkvdPFVAGDFVYFIPDELSAKEHLKGHGEWIAAMAGDLGDIGIVIKVYEDKDVRVAFrkntwtlsskclkliksnslsdstslEITYRDYLLPFLNSQVNASTQsapllnsespPDVVEEVEAVMREVVRGNPSAVKAflennanlidcpvlggk
MLNIEIGLRVIRGPDWKWldedggegglgTvvavksnvvsvIWDLGNKSSCYRVGSENAYDLQVYDSGPVGIKHETISCDACQDERSCIVGTRYSCIECSNYDLCASCYHGDEHDITHAFYRVDTPTSSTASLPPRRLSKKIYVRGFSIGAKVSRGLNWEWENQDGGPGKTGRIISIEDGKVGKSYRSVAKVLWSIGKENIYRIGSYGKVDLKCVGSGASSMVYKSHLPVLGQTISTGYIFRRGDRVKVITDAKTLQHVQESSKGGWTPQLLNFLGHTGIVHRVTEQTLVRVRFENCDNKWTFDPRALTKVDPFVAGDFVYFIPDELSAKEHLKGHGEWIAAMAGDLGDIGIVIKVYEDKDVRVAFRKNTWTLSSKCLKLIKSNSLSDSTSLEITYRDYLLPFLNSQVNASTQSAPLLNSESPPDvveeveavmrevvRGNPSAVKAFLENNANLIDCPVLGGK
***IEIGLRVIRGPDWKWLDEDGGEGGLGTVVAVKSNVVSVIWDLGNKSSCYRVGSENAYDLQVYDSGPVGIKHETISCDACQDERSCIVGTRYSCIECSNYDLCASCYHGDEHDITHAFYRVDT************LSKKIYVRGFSIGAKVSRGLNWEWENQDGGPGKTGRIISIEDGKVGKSYRSVAKVLWSIGKENIYRIGSYGKVDLKCVGSGASSMVYKSHLPVLGQTISTGYIFRRGDRVKVITDAKTLQHVQESSKGGWTPQLLNFLGHTGIVHRVTEQTLVRVRFENCDNKWTFDPRALTKVDPFVAGDFVYFIPDELSAKEHLKGHGEWIAAMAGDLGDIGIVIKVYEDKDVRVAFRKNTWTLSSKCLKLIKSNSLSDSTSLEITYRDYLLPFLNS**************************VMREVVRGNPSAVKAFLENNANLIDCPV****
****EIGLRVIRGPDWKWLDEDGGEGGLGTVVAVKSNVVSVIWDLGNKSSCYRVGSENAYDLQVYDSGPVGIKHETISCDACQDERSCIVGTRYSCIECSNYDLCASCYHGDEHDITHAFYRVDTPTSSTASLPPRRLSKKIYVRGFSIGAKVSRG*********************EDGKVGKSYRSVAKVLWSIGKENIYRIGSYGKVDLKCVGSGASSMVYKS***************RRGDRVKVITDAKTLQHVQE*****WTPQLLNFLGHTGIVHRVTEQTLVRVRFENCDNKWTFDPRALTKVDPFVAGDFVYFIPDELSAKEHLKGHGEWIAAMAGDLGDIGIVIKVYEDKDVRVAFRKNTWTLSSKCLK*****************************************************VMREVVRGNPSAVKAFLENNANLIDCPVLG**
MLNIEIGLRVIRGPDWKWLDEDGGEGGLGTVVAVKSNVVSVIWDLGNKSSCYRVGSENAYDLQVYDSGPVGIKHETISCDACQDERSCIVGTRYSCIECSNYDLCASCYHGDEHDITHAFYRVD*********PPRRLSKKIYVRGFSIGAKVSRGLNWEWENQDGGPGKTGRIISIEDGKVGKSYRSVAKVLWSIGKENIYRIGSYGKVDLKCVGSGASSMVYKSHLPVLGQTISTGYIFRRGDRVKVITDAKTLQHVQESSKGGWTPQLLNFLGHTGIVHRVTEQTLVRVRFENCDNKWTFDPRALTKVDPFVAGDFVYFIPDELSAKEHLKGHGEWIAAMAGDLGDIGIVIKVYEDKDVRVAFRKNTWTLSSKCLKLIKSNSLSDSTSLEITYRDYLLPFLNSQVNASTQSAPLLNSESPPDVVEEVEAVMREVVRGNPSAVKAFLENNANLIDCPVLGGK
*LNIEIGLRVIRGPDWKWLDEDGGEGGLGTVVAVKSNVVSVIWDLGNKSSCYRVGSENAYDLQVYDSGPVGIKHETISCDACQDERSCIVGTRYSCIECSNYDLCASCYHGDEHDITHAFYRVDTPTSSTASLPPRRLSKKIYVRGFSIGAKVSRGLNWEWENQDGGPGKTGRIISIEDGKVGKSYRSVAKVLWSIGKENIYRIGSYGKVDLKCVGSGASSMVYKSHLPVLGQTISTGYIFRRGDRVKVITDAKTLQHVQESSKGGWTPQLLNFLGHTGIVHRVTEQTLVRVRFENCDNKWTFDPRALTKVDPFVAGDFVYFIPDELSAKEHLKGHGEWIAAMAGDLGDIGIVIKVYEDKDVRVAFRKNTWTLSSKCLKLIKS**************************************SPPDVVEEVEAVMREVVRGNPSAVKAFLENNAN**********
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MLNIEIGLRVIRGPDWKWLDEDGGEGGLGTVVAVKSNVVSVIWDLGNKSSCYRVGSENAYDLQVYDSGPVGIKHETISCDACQDERSCIVGTRYSCIECSNYDLCASCYHGDEHDITHAFYRVDTPTSSTASLPPRRLSKKIYVRGFSIGAKVSRGLNWEWENQDGGPGKTGRIISIEDGKVGKSYRSVAKVLWSIGKENIYRIGSYGKVDLKCVGSGASSMVYKSHLPVLGQTISTGYIFRRGDRVKVITDAKTLQHVQESSKGGWTPQLLNFLGHTGIVHRVTEQTLVRVRFENCDNKWTFDPRALTKVDPFVAGDFVYFIPDELSAKEHLKGHGEWIAAMAGDLGDIGIVIKVYEDKDVRVAFRKNTWTLSSKCLKLIKSNSLSDSTSLEITYRDYLLPFLNSQVNASTQSAPLLNSESPPDVVEEVEAVMREVVRGNPSAVKAFLENNANLIDCPVLGGK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query464 2.2.26 [Sep-21-2011]
Q5ZIJ9 954 E3 ubiquitin-protein liga yes N/A 0.846 0.411 0.425 2e-91
Q68LP1 971 E3 ubiquitin-protein liga yes N/A 0.795 0.380 0.441 3e-85
Q8R516 973 E3 ubiquitin-protein liga yes N/A 0.795 0.379 0.438 1e-84
Q96AX9 1013 E3 ubiquitin-protein liga yes N/A 0.941 0.431 0.383 1e-82
Q9VUX2 1226 E3 ubiquitin-protein liga no N/A 0.812 0.307 0.427 2e-82
Q6GNY1 1011 E3 ubiquitin-protein liga N/A N/A 0.911 0.418 0.374 2e-77
Q804S5 1030 E3 ubiquitin-protein liga no N/A 0.773 0.348 0.406 6e-77
Q86YT6 1006 E3 ubiquitin-protein liga no N/A 0.797 0.367 0.403 8e-77
Q80SY4 1006 E3 ubiquitin-protein liga no N/A 0.773 0.356 0.411 1e-76
Q4U2R1 4836 E3 ubiquitin-protein liga no N/A 0.133 0.012 0.446 4e-07
>sp|Q5ZIJ9|MIB2_CHICK E3 ubiquitin-protein ligase MIB2 OS=Gallus gallus GN=MIB2 PE=2 SV=1 Back     alignment and function desciption
 Score =  336 bits (861), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 180/423 (42%), Positives = 249/423 (58%), Gaps = 30/423 (7%)

Query: 3   NIEIGLRVIRGPDWKWLDEDGGEGGLGTVVAV--------KSNVVSVIWDLGNKSSCYRV 54
           ++++G+RV+RG DWKW  +D GEG +GTVV +            V V WD GN+++ YR 
Sbjct: 8   SMQVGMRVVRGVDWKWGSQDSGEGNVGTVVEIGRTGSPTTPDKTVVVQWDQGNRTN-YRT 66

Query: 55  GSENAYDLQVYDSGPVGIKHETISCDACQDERSCIVGTRYSCIECSNYDLCASCYHGDEH 114
           G + AYDL +YD+  +G++H  I CD C+  +  I G R+ C  C +YDLC  CY  ++H
Sbjct: 67  GFQGAYDLLLYDNAQIGVRHPNIICDCCK--KHGIRGMRWKCKMCFDYDLCTQCYMNNKH 124

Query: 115 DITHAFYRVDTPTSSTASLPPRRLSKKIYVRGFSIGAKVSRGLNWEWENQDGGPGKTGRI 174
           D++HAF R +T  S    + PR+   +I ++G   GAKV RG +WEW NQDGG GKTGR+
Sbjct: 125 DLSHAFERYETAHSQPVLVSPRQNLTRITLKGTFQGAKVVRGPDWEWGNQDGGEGKTGRV 184

Query: 175 ISIEDGKVGKSYRSVAKVLWSIGKENIYRIGSYGKVDLKCVGSGASSMVYKSHLPVLGQT 234
           + I    V ++ RSVA V WS G  N+YR+G  GKVDLKC    +    YK HLP LG+ 
Sbjct: 185 VDIRGWDV-ETGRSVASVTWSDGTTNVYRVGHKGKVDLKCTVEASGGFYYKEHLPKLGKP 243

Query: 235 I-------STGYIFRRGDRVKVITDAKTLQHVQESSKGGWTPQLLNFLGHTGIVHRVTEQ 287
                   +  + F+ GD+VK + D   L+ +QE   GGW P++  F+G TG VHR+T++
Sbjct: 244 AELQRKESTDRHPFQHGDKVKCLLDIDILREMQE-GHGGWNPKMAEFIGQTGTVHRITDR 302

Query: 288 TLVRVRFENCDNKWTFDPRALTKVDPFVAGDFVYFIPDELSAKEHLKGHGEWIAAMAGDL 347
             VRV+F N + +WTF P ALTK++ F  GD V  I D  + K    GHGEW   MA  L
Sbjct: 303 GDVRVQF-NSETRWTFHPGALTKLNTFWVGDVVRVIDDMETVKRFQPGHGEWTDEMAPTL 361

Query: 348 GDIGIVIKVYEDKDVRVAFRKNTWTLSSKCL---------KLIKSNSLSDSTSLEITYRD 398
           G IG VIKVY D D+RV+    +WT +  CL          L+ + +  +S S  IT  +
Sbjct: 362 GHIGKVIKVYGDGDLRVSVGDQSWTFNPACLTAYQRDEEANLMTTENAKESKSTLITVLE 421

Query: 399 YLL 401
            LL
Sbjct: 422 KLL 424
E3 ubiquitin-protein ligase that mediates ubiquitination of Delta receptors, which act as ligands of Notch proteins. Positively regulates the Delta-mediated Notch signaling by ubiquitinating the intracellular domain of Delta, leading to endocytosis of Delta receptors.
Gallus gallus (taxid: 9031)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -
>sp|Q68LP1|MIB2_RAT E3 ubiquitin-protein ligase MIB2 OS=Rattus norvegicus GN=Mib2 PE=2 SV=2 Back     alignment and function description
>sp|Q8R516|MIB2_MOUSE E3 ubiquitin-protein ligase MIB2 OS=Mus musculus GN=Mib2 PE=1 SV=2 Back     alignment and function description
>sp|Q96AX9|MIB2_HUMAN E3 ubiquitin-protein ligase MIB2 OS=Homo sapiens GN=MIB2 PE=1 SV=3 Back     alignment and function description
>sp|Q9VUX2|MIB_DROME E3 ubiquitin-protein ligase mind-bomb OS=Drosophila melanogaster GN=mib1 PE=1 SV=3 Back     alignment and function description
>sp|Q6GNY1|MIB1_XENLA E3 ubiquitin-protein ligase mib1 OS=Xenopus laevis GN=mib1 PE=2 SV=1 Back     alignment and function description
>sp|Q804S5|MIB1_DANRE E3 ubiquitin-protein ligase mib1 OS=Danio rerio GN=mib1 PE=1 SV=1 Back     alignment and function description
>sp|Q86YT6|MIB1_HUMAN E3 ubiquitin-protein ligase MIB1 OS=Homo sapiens GN=MIB1 PE=1 SV=1 Back     alignment and function description
>sp|Q80SY4|MIB1_MOUSE E3 ubiquitin-protein ligase MIB1 OS=Mus musculus GN=Mib1 PE=1 SV=1 Back     alignment and function description
>sp|Q4U2R1|HERC2_MOUSE E3 ubiquitin-protein ligase HERC2 OS=Mus musculus GN=Herc2 PE=1 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query464
307200852 1005 E3 ubiquitin-protein ligase MIB2 [Harpeg 0.939 0.433 0.401 3e-95
242021591 945 ubiquitin ligase protein MIB2, putative 0.937 0.460 0.406 3e-94
383859212 1007 PREDICTED: E3 ubiquitin-protein ligase M 0.937 0.431 0.405 2e-93
328783803 997 PREDICTED: e3 ubiquitin-protein ligase M 0.920 0.428 0.412 3e-93
380018782 933 PREDICTED: LOW QUALITY PROTEIN: E3 ubiqu 0.920 0.457 0.406 1e-92
195385697 1062 GJ11592 [Drosophila virilis] gi|19414799 0.946 0.413 0.397 8e-92
158299468 1034 AGAP008851-PA [Anopheles gambiae str. PE 0.918 0.411 0.413 2e-91
195115657 1056 GI13053 [Drosophila mojavensis] gi|19391 0.959 0.421 0.400 3e-91
195081767 902 GH17997 [Drosophila grimshawi] gi|193905 0.943 0.485 0.390 4e-91
427791463 944 Putative e3 ubiquitin-protein ligase mib 0.879 0.432 0.415 5e-91
>gi|307200852|gb|EFN80905.1| E3 ubiquitin-protein ligase MIB2 [Harpegnathos saltator] Back     alignment and taxonomy information
 Score =  355 bits (911), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 204/508 (40%), Positives = 270/508 (53%), Gaps = 72/508 (14%)

Query: 4   IEIGLRVIRGPDWKWLDEDGGEGGLGTVVAV-------------------KSNVVSVIWD 44
           +E+GLRV+RGPDWKW D+DGGEG  GTVV +                       V V WD
Sbjct: 2   LEVGLRVVRGPDWKWDDQDGGEGHAGTVVEIGKPPFTGNSASSPNPADRTPDKTVIVQWD 61

Query: 45  LGNKSSCYRVGSENAYDLQVYDSGPVGIKHETISCDACQDERSCIVGTRYSCIECSNYDL 104
            G++S+ YR+G + AYDL V+D+   GIKH  I CD C+  R  I G R+ C +C +YDL
Sbjct: 62  HGSRSN-YRIGYQGAYDLLVFDNASAGIKHSNIICDGCK--RHGISGIRWKCSQCFDYDL 118

Query: 105 CASCYHGDEHDITHAFYRVDTPTSSTASLPPRRLSKKIYVRGFSIGAKVSRGLNWEWENQ 164
           C  CY GD HD+TH F R  T  +    L PR    K+ ++G  IGAKV RG +WEW NQ
Sbjct: 119 CTQCYMGDVHDLTHTFKRFQTANAVGVQLTPREGCTKMPLKGIFIGAKVIRGPDWEWGNQ 178

Query: 165 DGGPGKTGRIISIEDGKVGKSYRSVAKVLWSIGKENIYRIGSYGKVDLKCVGSGASSMVY 224
           DGG GKTGR++ I  G   +S RSVA V WS G  N+YR+G  G VDL  V    S   Y
Sbjct: 179 DGGRGKTGRVMDIR-GWDNESCRSVATVTWSTGSTNVYRLGYKGCVDLCYVEEAKSGTYY 237

Query: 225 KSHLPVLGQTIST------------------------GYIFRRGDRVKVITDAKTLQHVQ 260
           + HLP+LGQ + T                           F  GDRVKV+ + + L+ +Q
Sbjct: 238 REHLPLLGQPVMTIPDNGNNSTTAKNGGVTNATSSPHHLTFNVGDRVKVLLEVEMLKEMQ 297

Query: 261 ESSKGGWTPQLLNFLGHTGIVHRVTEQTLVRVRFENCDNKWTFDPRALTKV---DPFVAG 317
           +S  GGW P++   +G  G VHR+T++  +RV++E C+N+WTF P ALTKV   D FV G
Sbjct: 298 DSGHGGWNPRMAECIGKIGTVHRITDKGDIRVQYEGCNNRWTFHPGALTKVTSKDAFVVG 357

Query: 318 DFVYFIPDELSAKEHLKGHGEWIAAMAGDLGDIGIVIKVYEDKDVRVAFRKNTWTLSSKC 377
           D V    D  + K + +GHGEWI  M   LG  G V+K+Y D D+RVA   +TWT     
Sbjct: 358 DVVRVKSDLTAIKHYQRGHGEWIDVMKNALGKTGKVMKIYADGDLRVALDSHTWTF---- 413

Query: 378 LKLIKSNSLSDSTSLEITYRDYLLPFLNSQVNASTQSAPLLNSESPPDVVEEVEAVMREV 437
                 N LS            L+P   +   A+   A ++   S      EVE ++R+ 
Sbjct: 414 ------NPLS----------VVLVPAGTNVAAATHYDANIIRDRSADGTDSEVEKLLRDA 457

Query: 438 VRGNP--SAVKAFLENNANLIDCPVLGG 463
            RG    +AV+ FL+     +D    GG
Sbjct: 458 ARGEAGVAAVREFLKKYPGRVDARAPGG 485

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|242021591|ref|XP_002431228.1| ubiquitin ligase protein MIB2, putative [Pediculus humanus corporis] gi|212516477|gb|EEB18490.1| ubiquitin ligase protein MIB2, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|383859212|ref|XP_003705090.1| PREDICTED: E3 ubiquitin-protein ligase MIB2-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|328783803|ref|XP_392821.4| PREDICTED: e3 ubiquitin-protein ligase MIB2-like [Apis mellifera] Back     alignment and taxonomy information
>gi|380018782|ref|XP_003693301.1| PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase MIB2-like [Apis florea] Back     alignment and taxonomy information
>gi|195385697|ref|XP_002051541.1| GJ11592 [Drosophila virilis] gi|194147998|gb|EDW63696.1| GJ11592 [Drosophila virilis] Back     alignment and taxonomy information
>gi|158299468|ref|XP_319593.4| AGAP008851-PA [Anopheles gambiae str. PEST] gi|157013533|gb|EAA14796.4| AGAP008851-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|195115657|ref|XP_002002373.1| GI13053 [Drosophila mojavensis] gi|193912948|gb|EDW11815.1| GI13053 [Drosophila mojavensis] Back     alignment and taxonomy information
>gi|195081767|ref|XP_001997357.1| GH17997 [Drosophila grimshawi] gi|193905916|gb|EDW04783.1| GH17997 [Drosophila grimshawi] Back     alignment and taxonomy information
>gi|427791463|gb|JAA61183.1| Putative e3 ubiquitin-protein ligase mib2, partial [Rhipicephalus pulchellus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query464
UNIPROTKB|E1BU56 956 MIB2 "E3 ubiquitin-protein lig 0.875 0.424 0.398 1.1e-80
UNIPROTKB|Q5ZIJ9 954 MIB2 "E3 ubiquitin-protein lig 0.875 0.425 0.398 1.1e-80
UNIPROTKB|F1NSA9 954 MIB2 "E3 ubiquitin-protein lig 0.875 0.425 0.398 1.8e-80
RGD|1359469 971 Mib2 "mindbomb E3 ubiquitin pr 0.795 0.380 0.425 4.2e-79
UNIPROTKB|Q68LP1 971 Mib2 "E3 ubiquitin-protein lig 0.795 0.380 0.425 4.2e-79
MGI|MGI:2679684 973 Mib2 "mindbomb homolog 2 (Dros 0.795 0.379 0.423 8.7e-79
FB|FBgn0086442 1049 mib2 "mind bomb 2" [Drosophila 0.810 0.358 0.414 1.1e-78
ZFIN|ZDB-GENE-050628-1 999 mib2 "mind bomb 2" [Danio reri 0.864 0.401 0.387 2.1e-77
UNIPROTKB|F1PZI2 1014 MIB2 "Uncharacterized protein" 0.795 0.363 0.415 5.5e-77
UNIPROTKB|D6RAZ0 816 MIB2 "E3 ubiquitin-protein lig 0.795 0.452 0.412 1.1e-76
UNIPROTKB|E1BU56 MIB2 "E3 ubiquitin-protein ligase MIB2" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
 Score = 810 (290.2 bits), Expect = 1.1e-80, P = 1.1e-80
 Identities = 171/429 (39%), Positives = 241/429 (56%)

Query:     3 NIEIGLRVIRGPDWKWXXXXXXXXXXXTXXXXXXXXXXXI--------WDLGNKSSCYRV 54
             ++++G+RV+RG DWKW           T                    WD GN+++ YR 
Sbjct:     8 SMQVGMRVVRGVDWKWGSQDSGEGNVGTVVEIGRTGSPTTPDKTVVVQWDQGNRTN-YRT 66

Query:    55 GSENAYDLQVYDSGPVGIKHETISCDACQDERSCIVGTRYSCIECSNYDLCASCYHGDEH 114
             G + AYDL +YD+  +G++H  I CD C+  +  I G R+ C  C +YDLC  CY  ++H
Sbjct:    67 GFQGAYDLLLYDNAQIGVRHPNIICDCCK--KHGIRGMRWKCKMCFDYDLCTQCYMNNKH 124

Query:   115 DITHAFYRVDTPTSSTASLPPRRLSKKIYVRGFSIGAKVSRGLNWEWENQDGGPGKTGRI 174
             D++HAF R +T  S    + PR+   +I ++G   GAKV RG +WEW NQDGG GKTGR+
Sbjct:   125 DLSHAFERYETAHSQPVLVSPRQNLTRITLKGTFQGAKVVRGPDWEWGNQDGGEGKTGRV 184

Query:   175 ISIEDGKVGKSYRSVAKVLWSIGKENIYRIGSYGKVDLKCVGSGASSMVYKSHLPVLGQT 234
             + I    V ++ RSVA V WS G  N+YR+G  GKVDLKC    +    YK HLP LG+ 
Sbjct:   185 VDIRGWDV-ETGRSVASVTWSDGTTNVYRVGHKGKVDLKCTVEASGGFYYKEHLPKLGKP 243

Query:   235 I------STG-YIFRRGDRVKVITDAKTLQHVQESSKGGWTPQLLNFLGHTGIVHRVTEQ 287
                    ST  + F+ GD+VK + D   L+ +QE   GGW P++  F+G TG VHR+T++
Sbjct:   244 AELQRKESTDRHPFQHGDKVKCLLDIDILREMQEGH-GGWNPKMAEFIGQTGTVHRITDR 302

Query:   288 TLVRVRFENCDNKWTFDPRALTKVDPFVAGDFVYFIPDELSAKEHLKGHGEWIAAMAGDL 347
               VRV+F N + +WTF P ALTK++ F  GD V  I D  + K    GHGEW   MA  L
Sbjct:   303 GDVRVQF-NSETRWTFHPGALTKLNTFWVGDVVRVIDDMETVKRFQPGHGEWTDEMAPTL 361

Query:   348 GDIGIVIKVYEDKDVRVAFRKNTWTLSSKCLKLIKSNSLSDSTSLEITY--RDYLLPFLN 405
             G IG VIKVY D D+RV+    +WT +  CL   + +  ++  + E     +  L+  L 
Sbjct:   362 GHIGKVIKVYGDGDLRVSVGDQSWTFNPACLTAYQRDEEANLMTTENAKESKSTLITVLE 421

Query:   406 SQVNASTQS 414
               ++  T+S
Sbjct:   422 KLLSQKTES 430
GO:0008270 "zinc ion binding" evidence=IEA
GO:0000151 "ubiquitin ligase complex" evidence=IEA
GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA
GO:0004871 "signal transducer activity" evidence=IEA
GO:0005769 "early endosome" evidence=IEA
GO:0043123 "positive regulation of I-kappaB kinase/NF-kappaB cascade" evidence=IEA
UNIPROTKB|Q5ZIJ9 MIB2 "E3 ubiquitin-protein ligase MIB2" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1NSA9 MIB2 "E3 ubiquitin-protein ligase MIB2" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
RGD|1359469 Mib2 "mindbomb E3 ubiquitin protein ligase 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q68LP1 Mib2 "E3 ubiquitin-protein ligase MIB2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:2679684 Mib2 "mindbomb homolog 2 (Drosophila)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
FB|FBgn0086442 mib2 "mind bomb 2" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050628-1 mib2 "mind bomb 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1PZI2 MIB2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|D6RAZ0 MIB2 "E3 ubiquitin-protein ligase MIB2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query464
pfam0670163 pfam06701, MIB_HERC2, Mib_herc2 4e-19
pfam0670163 pfam06701, MIB_HERC2, Mib_herc2 1e-15
cd0233945 cd02339, ZZ_Mind_bomb, Zinc finger, ZZ type 2e-15
cd0234043 cd02340, ZZ_NBR1_like, Zinc finger, ZZ type 1e-11
cd0233849 cd02338, ZZ_PCMF_like, Zinc finger, ZZ type 2e-10
cd0224946 cd02249, ZZ, Zinc finger, ZZ type 2e-10
smart0029144 smart00291, ZnF_ZZ, Zinc-binding domain, present i 4e-10
pfam0056946 pfam00569, ZZ, Zinc finger, ZZ type 1e-08
cd0234445 cd02344, ZZ_HERC2, Zinc finger, ZZ type 2e-07
cd0233449 cd02334, ZZ_dystrophin, Zinc finger, ZZ type 4e-07
cd0234148 cd02341, ZZ_ZZZ3, Zinc finger, ZZ type 1e-05
cd0234348 cd02343, ZZ_EF, Zinc finger, ZZ type 5e-05
cd0234549 cd02345, ZZ_dah, Zinc finger, ZZ type 3e-04
cd0233549 cd02335, ZZ_ADA2, Zinc finger, ZZ type 3e-04
cd0233741 cd02337, ZZ_CBP, Zinc finger, ZZ type 6e-04
>gnl|CDD|115363 pfam06701, MIB_HERC2, Mib_herc2 Back     alignment and domain information 
 Score = 80.5 bits (199), Expect = 4e-19
 Identities = 34/63 (53%), Positives = 45/63 (71%), Gaps = 3/63 (4%)

Query: 7  GLRVIRGPDWKWLDEDGGEGGLGTVVAVKS--NVVSVIWDLGNKSSCYRVGSENAYDLQV 64
          G RV+RG DWKW D+DGGEGG GTV  ++S    V V WD G+ +S YR+G+E  YDL++
Sbjct: 1  GARVVRGVDWKWGDQDGGEGGEGTVTEIESPDGWVVVQWDTGSTNS-YRMGAEGKYDLKL 59

Query: 65 YDS 67
           D+
Sbjct: 60 ADN 62

Named "mib/herc2 domain" in. Usually the protein also contains an E3 ligase domain (either Ring or Hect). Length = 63
>gnl|CDD|115363 pfam06701, MIB_HERC2, Mib_herc2 Back     alignment and domain information
>gnl|CDD|239079 cd02339, ZZ_Mind_bomb, Zinc finger, ZZ type Back     alignment and domain information
>gnl|CDD|239080 cd02340, ZZ_NBR1_like, Zinc finger, ZZ type Back     alignment and domain information
>gnl|CDD|239078 cd02338, ZZ_PCMF_like, Zinc finger, ZZ type Back     alignment and domain information
>gnl|CDD|239069 cd02249, ZZ, Zinc finger, ZZ type Back     alignment and domain information
>gnl|CDD|197633 smart00291, ZnF_ZZ, Zinc-binding domain, present in Dystrophin, CREB-binding protein Back     alignment and domain information
>gnl|CDD|144236 pfam00569, ZZ, Zinc finger, ZZ type Back     alignment and domain information
>gnl|CDD|239084 cd02344, ZZ_HERC2, Zinc finger, ZZ type Back     alignment and domain information
>gnl|CDD|239074 cd02334, ZZ_dystrophin, Zinc finger, ZZ type Back     alignment and domain information
>gnl|CDD|239081 cd02341, ZZ_ZZZ3, Zinc finger, ZZ type Back     alignment and domain information
>gnl|CDD|239083 cd02343, ZZ_EF, Zinc finger, ZZ type Back     alignment and domain information
>gnl|CDD|239085 cd02345, ZZ_dah, Zinc finger, ZZ type Back     alignment and domain information
>gnl|CDD|239075 cd02335, ZZ_ADA2, Zinc finger, ZZ type Back     alignment and domain information
>gnl|CDD|239077 cd02337, ZZ_CBP, Zinc finger, ZZ type Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 464
KOG4582|consensus278 99.95
PF0670168 MIB_HERC2: Mib_herc2; InterPro: IPR010606 Mib is a 99.87
PF0670168 MIB_HERC2: Mib_herc2; InterPro: IPR010606 Mib is a 99.83
cd0234445 ZZ_HERC2 Zinc finger, ZZ type. Zinc finger present 99.65
cd0233945 ZZ_Mind_bomb Zinc finger, ZZ type. Zinc finger pre 99.59
cd0234043 ZZ_NBR1_like Zinc finger, ZZ type. Zinc finger pre 99.48
cd0234148 ZZ_ZZZ3 Zinc finger, ZZ type. Zinc finger present 99.45
cd0233449 ZZ_dystrophin Zinc finger, ZZ type. Zinc finger pr 99.44
PF0056946 ZZ: Zinc finger, ZZ type; InterPro: IPR000433 Zinc 99.36
cd0233849 ZZ_PCMF_like Zinc finger, ZZ type. Zinc finger pre 99.34
cd0234549 ZZ_dah Zinc finger, ZZ type. Zinc finger present i 99.33
cd0234243 ZZ_UBA_plant Zinc finger, ZZ type. Zinc finger pre 99.31
cd0224946 ZZ Zinc finger, ZZ type. Zinc finger present in dy 99.22
cd0233549 ZZ_ADA2 Zinc finger, ZZ type. Zinc finger present 99.17
cd0234348 ZZ_EF Zinc finger, ZZ type. Zinc finger present in 99.17
smart0029144 ZnF_ZZ Zinc-binding domain, present in Dystrophin, 99.12
KOG1280|consensus381 98.96
cd0233741 ZZ_CBP Zinc finger, ZZ type. Zinc finger present i 98.96
KOG4286|consensus966 98.57
KOG0457|consensus438 97.84
cd0233645 ZZ_RSC8 Zinc finger, ZZ type. Zinc finger present 97.58
KOG4301|consensus434 97.5
COG5114432 Histone acetyltransferase complex SAGA/ADA, subuni 97.3
PF0764930 C1_3: C1-like domain; InterPro: IPR011424 This sho 90.76
KOG1778|consensus319 86.9
PRK06763213 F0F1 ATP synthase subunit alpha; Validated 85.54
smart0065283 eIF1a eukaryotic translation initiation factor 1A. 82.72
KOG1999|consensus 1024 82.12
PF0310730 C1_2: C1 domain; InterPro: IPR004146 This short do 80.76
TIGR0000868 infA translation initiation factor IF-1. This fami 80.49
PF15057124 DUF4537: Domain of unknown function (DUF4537) 80.08
>KOG4582|consensus Back     alignment and domain information 
Probab=99.95  E-value=3.8e-28  Score=242.28  Aligned_cols=195  Identities=33%  Similarity=0.561  Sum_probs=175.3

Q ss_pred             ccccceeeeCCCCcccCC---CCCCCccceEEEE--------e--cceEEEEecCCCCCCceeec--CCCcccccccCCC
Q psy16233          4 IEIGLRVIRGPDWKWLDE---DGGEGGLGTVVAV--------K--SNVVSVIWDLGNKSSCYRVG--SENAYDLQVYDSG   68 (464)
Q Consensus         4 i~~G~rVvRG~dW~w~~q---Dgg~g~~Gtv~~~--------~--~~~v~V~Wd~g~~~~~YR~G--~~g~~DL~~~d~a   68 (464)
                      +.+++||+||.||+|-.+   ++..++++++..+        +  ...+.+.||..... ++|.+  +.+..++.+.+++
T Consensus        61 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s-~~k~~~~~~~~~~~~~~~~~  139 (278)
T KOG4582|consen   61 DGVGMRVVRGNDLFDVTNQRLADEIGHVNAVRSFNSAAPSSGSSTPATVPVPWDKIPRS-IIKVLEKYQKLASLVITLNP  139 (278)
T ss_pred             cccceeEEecCCceEeecccCccccccccceeeeccccccccccCccccccccchhhhh-hhhhhHHHhhhhhhhhhcCC
Confidence            458899999999999999   5566677777766        2  46788889999999 89988  5788899999999


Q ss_pred             Ccceeecc-----eEecCCCCCCCeeeccceeecccCCCccccccccCCCCCCcceeeE---eecCCCCCCCCCCccccc
Q psy16233         69 PVGIKHET-----ISCDACQDERSCIVGTRYSCIECSNYDLCASCYHGDEHDITHAFYR---VDTPTSSTASLPPRRLSK  140 (464)
Q Consensus        69 ~~gv~H~~-----v~CD~C~~~~~~I~G~RykC~~C~d~DLC~~C~~~~~H~~~H~f~r---~~~p~~~~~~~~~r~~~~  140 (464)
                      ..+..|++     +.||+|...+  |+|.||||++|+|||||+.||+.+.|+..|.|+|   ..+|....+.++.++..+
T Consensus       140 ~~~~~H~~~~~~~v~CD~C~~~~--IvG~RyKC~~C~dYDLCe~Ce~~~~~h~~H~~lR~~t~~t~~~~~~~~~~p~~~~  217 (278)
T KOG4582|consen  140 VVGEMHPNISKLSVPCDNCGKPG--IVGARYKCTVCPDYDLCERCEAGNEHHAAHAMLRLHTNETPFSGYVMLSSPPNPV  217 (278)
T ss_pred             CccccCCCcccccccCCCccCCc--cccceeeecCCCccchhHHhhcCCCCCcccceeecccccCCCCcceeccCCCCcc
Confidence            99999999     9999999999  9999999999999999999999997889999999   888888889999999999


Q ss_pred             ceecccccccceEEeccCccccccCCCCCCcceEEEccCCccccccceeEEEEeecCCCceE
Q psy16233        141 KIYVRGFSIGAKVSRGLNWEWENQDGGPGKTGRIISIEDGKVGKSYRSVAKVLWSIGKENIY  202 (464)
Q Consensus       141 ~~~~~gl~~GarVvRg~dW~w~~QDGg~g~~GtV~~i~~w~~~~~~r~~a~V~W~~g~~~~y  202 (464)
                      ....+++++|..++++.+|.|+.|++.++..|++.++..|. ..+.++.+.+-|..++.+.|
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  278 (278)
T KOG4582|consen  218 NLNKRPIFVGHSKVRGNDWYWTSLGGGEGRIGRVNEIVLWI-NGPRRSSAVVYWVMGSENDY  278 (278)
T ss_pred             cccccccccccccccccCCccccccCCCCCCcccccccccc-ccccccceeeecCCCccCCC
Confidence            99999999999999999999999999999999999999997 88888888888888776554

>PF06701 MIB_HERC2: Mib_herc2; InterPro: IPR010606 Mib is a RING ubiquitin ligase in the Notch pathway Back     alignment and domain information
>PF06701 MIB_HERC2: Mib_herc2; InterPro: IPR010606 Mib is a RING ubiquitin ligase in the Notch pathway Back     alignment and domain information
>cd02344 ZZ_HERC2 Zinc finger, ZZ type Back     alignment and domain information
>cd02339 ZZ_Mind_bomb Zinc finger, ZZ type Back     alignment and domain information
>cd02340 ZZ_NBR1_like Zinc finger, ZZ type Back     alignment and domain information
>cd02341 ZZ_ZZZ3 Zinc finger, ZZ type Back     alignment and domain information
>cd02334 ZZ_dystrophin Zinc finger, ZZ type Back     alignment and domain information
>PF00569 ZZ: Zinc finger, ZZ type; InterPro: IPR000433 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>cd02338 ZZ_PCMF_like Zinc finger, ZZ type Back     alignment and domain information
>cd02345 ZZ_dah Zinc finger, ZZ type Back     alignment and domain information
>cd02342 ZZ_UBA_plant Zinc finger, ZZ type Back     alignment and domain information
>cd02249 ZZ Zinc finger, ZZ type Back     alignment and domain information
>cd02335 ZZ_ADA2 Zinc finger, ZZ type Back     alignment and domain information
>cd02343 ZZ_EF Zinc finger, ZZ type Back     alignment and domain information
>smart00291 ZnF_ZZ Zinc-binding domain, present in Dystrophin, CREB-binding protein Back     alignment and domain information
>KOG1280|consensus Back     alignment and domain information
>cd02337 ZZ_CBP Zinc finger, ZZ type Back     alignment and domain information
>KOG4286|consensus Back     alignment and domain information
>KOG0457|consensus Back     alignment and domain information
>cd02336 ZZ_RSC8 Zinc finger, ZZ type Back     alignment and domain information
>KOG4301|consensus Back     alignment and domain information
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics] Back     alignment and domain information
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines Back     alignment and domain information
>KOG1778|consensus Back     alignment and domain information
>PRK06763 F0F1 ATP synthase subunit alpha; Validated Back     alignment and domain information
>smart00652 eIF1a eukaryotic translation initiation factor 1A Back     alignment and domain information
>KOG1999|consensus Back     alignment and domain information
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines Back     alignment and domain information
>TIGR00008 infA translation initiation factor IF-1 Back     alignment and domain information
>PF15057 DUF4537: Domain of unknown function (DUF4537) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query464
3dkm_A89 Crystal Structure Of The Hectd1 Cph Domain Length = 2e-07
2dk3_A86 Solution Structure Of Mib-Herc2 Domain In Hect Doma 4e-06
>pdb|3DKM|A Chain A, Crystal Structure Of The Hectd1 Cph Domain Length = 89 Back     alignment and structure 
Iteration: 1

 Score = 53.9 bits (128), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/64 (40%), Positives = 36/64 (56%), Gaps = 7/64 (10%)
Query: 150 GAKVSRGLNWEWENQDGGPGKTGRIISIEDGKVGKSYRSVAKVLWSIGKENIYRIGSYGK 209
           GA+V+RGL+W+W +QDG P   G +        G+ +     V W  G  N YR+G+ GK
Sbjct: 25  GARVTRGLDWKWRDQDGSPQGEGTV-------TGELHNGWIDVTWDAGGSNSYRMGAEGK 77
Query: 210 VDLK 213
            DLK
Sbjct: 78  FDLK 81
>pdb|2DK3|A Chain A, Solution Structure Of Mib-Herc2 Domain In Hect Domain Containing Protein 1 Length = 86 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query464
2dip_A98 Zinc finger SWIM domain-containing protein 2; ZZ d 2e-23
3dkm_A89 E3 ubiquitin-protein ligase hectd1; UBL conjugatio 1e-22
3dkm_A89 E3 ubiquitin-protein ligase hectd1; UBL conjugatio 6e-20
2dk3_A86 E3 ubiquitin-protein ligase hectd1; MIB-HERC2 doma 3e-22
2dk3_A86 E3 ubiquitin-protein ligase hectd1; MIB-HERC2 doma 2e-20
2fc7_A82 ZZZ3 protein; structure genomics, ZZ domain, struc 5e-16
2e5r_A63 Dystrobrevin alpha; ZZ domain, structural genomics 7e-15
1tot_A52 CREB-binding protein; zinc binding, CBP, TAZ2, tra 3e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-04
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6 Length = 98 Back     alignment and structure
 Score = 93.6 bits (232), Expect = 2e-23
 Identities = 25/101 (24%), Positives = 37/101 (36%), Gaps = 12/101 (11%)

Query: 55  GSENAYDLQVYDSGPVGI---------KHETISCDACQDERSCIVGTRYSCIECSNYDLC 105
           GS  +  L+ + +    +         KH  I C+ C+  +  I G  Y C EC  Y LC
Sbjct: 1   GSSGSSGLEEFKNSSKLVAAAEKERLDKHLGIPCNNCK--QFPIEGKCYKCTECIEYHLC 58

Query: 106 ASCYHGDEHDITHAFYRVDTPTSSTASLPPRRLSKKIYVRG 146
             C+    H ++H F   +       SL  R         G
Sbjct: 59  QECFDSYCH-LSHTFTFREKRNQKWRSLEKRADEVSGPSSG 98
>3dkm_A E3 ubiquitin-protein ligase hectd1; UBL conjugation, UBL conjugation pathway, structural genomics consortium, SGC;, ANK repeat, NPPSFA; 1.60A {Homo sapiens} Length = 89 Back     alignment and structure
>3dkm_A E3 ubiquitin-protein ligase hectd1; UBL conjugation, UBL conjugation pathway, structural genomics consortium, SGC;, ANK repeat, NPPSFA; 1.60A {Homo sapiens} Length = 89 Back     alignment and structure
>2dk3_A E3 ubiquitin-protein ligase hectd1; MIB-HERC2 domain, HECT domain containing protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.19.1 Length = 86 Back     alignment and structure
>2dk3_A E3 ubiquitin-protein ligase hectd1; MIB-HERC2 domain, HECT domain containing protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.19.1 Length = 86 Back     alignment and structure
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6 Length = 82 Back     alignment and structure
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 63 Back     alignment and structure
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6 Length = 52 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query464
2dk3_A86 E3 ubiquitin-protein ligase hectd1; MIB-HERC2 doma 99.87
3dkm_A89 E3 ubiquitin-protein ligase hectd1; UBL conjugatio 99.83
2dk3_A86 E3 ubiquitin-protein ligase hectd1; MIB-HERC2 doma 99.78
3dkm_A89 E3 ubiquitin-protein ligase hectd1; UBL conjugatio 99.77
2dip_A98 Zinc finger SWIM domain-containing protein 2; ZZ d 99.65
2fc7_A82 ZZZ3 protein; structure genomics, ZZ domain, struc 99.64
2e5r_A63 Dystrobrevin alpha; ZZ domain, structural genomics 99.62
1tot_A52 CREB-binding protein; zinc binding, CBP, TAZ2, tra 99.32
2ckk_A127 KIN17; beta barrel, ribosomal protein, ribonucleop 86.22
1v5n_A89 PDI-like hypothetical protein AT1G60420; DC1 domai 83.66
2do3_A69 Transcription elongation factor SPT5; KOW motif, s 82.73
>2dk3_A E3 ubiquitin-protein ligase hectd1; MIB-HERC2 domain, HECT domain containing protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.19.1 Back     alignment and structure
Probab=99.87  E-value=4.1e-23  Score=168.50  Aligned_cols=67  Identities=40%  Similarity=0.755  Sum_probs=62.7

Q ss_pred             CcccccceeeeCCCCcccCCCCCCCccceEEEEe-cceEEEEecCCCCCCceeecCCCcccccccCCCC
Q psy16233          2 LNIEIGLRVIRGPDWKWLDEDGGEGGLGTVVAVK-SNVVSVIWDLGNKSSCYRVGSENAYDLQVYDSGP   69 (464)
Q Consensus         2 ~~i~~G~rVvRG~dW~w~~qDgg~g~~Gtv~~~~-~~~v~V~Wd~g~~~~~YR~G~~g~~DL~~~d~a~   69 (464)
                      .+|++|+||||||||||+|||||+|++|||+++. ++|+.|+||++..| +||+|++|+|||++++.+.
T Consensus        14 ~~i~vG~rVVRG~DWkWgdQDGG~G~~GtV~~~~~~~wv~V~Wd~G~~n-~YR~G~~G~~DL~v~~~~~   81 (86)
T 2dk3_A           14 KYMVPGARVIRGLDWKWRDQDGSPQGEGTVTGELHNGWIDVTWDAGGSN-SYRMGAEGKFDLKLAPGYS   81 (86)
T ss_dssp             GTCCTTSEEEECTTCCSCCTTCSSCCCEEBCSCCCSSEEEEEETTTEEE-EEEBSTTSCBCEEECTTCC
T ss_pred             hccccCCEEEeCCCCcccccCCCCCcceEEEEEcCCCEEEEEeCCCCee-eEEecCCCCEEEEEecCCc
Confidence            5799999999999999999999999999999764 89999999999998 8999999999999987764
>3dkm_A E3 ubiquitin-protein ligase hectd1; UBL conjugation, UBL conjugation pathway, structural genomics consortium, SGC;, ANK repeat, NPPSFA; 1.60A {Homo sapiens} SCOP: b.34.19.1 Back     alignment and structure
>2dk3_A E3 ubiquitin-protein ligase hectd1; MIB-HERC2 domain, HECT domain containing protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.19.1 Back     alignment and structure
>3dkm_A E3 ubiquitin-protein ligase hectd1; UBL conjugation, UBL conjugation pathway, structural genomics consortium, SGC;, ANK repeat, NPPSFA; 1.60A {Homo sapiens} SCOP: b.34.19.1 Back     alignment and structure
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6 Back     alignment and structure
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6 Back     alignment and structure
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6 Back     alignment and structure
>2ckk_A KIN17; beta barrel, ribosomal protein, ribonucleoprotein, nuclear protein; 1.45A {Homo sapiens} Back     alignment and structure
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3 Back     alignment and structure
>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 464
d2dk3a173 b.34.19.1 (A:8-80) E3 ubiquitin-protein ligase hec 2e-20
d2dk3a173 b.34.19.1 (A:8-80) E3 ubiquitin-protein ligase hec 8e-20
d2dipa185 g.44.1.6 (A:8-92) Zinc finger ZZ-type-containing p 3e-17
d2fc7a169 g.44.1.6 (A:8-76) Zinc finger ZZ-type-containing p 4e-12
d1tota152 g.44.1.6 (A:1-52) CREB-binding protein, CBP {Mouse 7e-11
>d2dk3a1 b.34.19.1 (A:8-80) E3 ubiquitin-protein ligase hectd1 {Human (Homo sapiens) [TaxId: 9606]} Length = 73 Back     information, alignment and structure

class: All beta proteins
fold: SH3-like barrel
superfamily: Mib/herc2 domain-like
family: Mib/herc2 domain
domain: E3 ubiquitin-protein ligase hectd1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.8 bits (205), Expect = 2e-20
 Identities = 29/62 (46%), Positives = 38/62 (61%), Gaps = 2/62 (3%)

Query: 4  IEIGLRVIRGPDWKWLDEDGGEGGLGTVVAVKSN-VVSVIWDLGNKSSCYRVGSENAYDL 62
          +  G RVIRG DWKW D+DG   G GTV     N  + V WD G  +S YR+G+E  +DL
Sbjct: 9  MVPGARVIRGLDWKWRDQDGSPQGEGTVTGELHNGWIDVTWDAGGSNS-YRMGAEGKFDL 67

Query: 63 QV 64
          ++
Sbjct: 68 KL 69
>d2dk3a1 b.34.19.1 (A:8-80) E3 ubiquitin-protein ligase hectd1 {Human (Homo sapiens) [TaxId: 9606]} Length = 73 Back     information, alignment and structure
>d2dipa1 g.44.1.6 (A:8-92) Zinc finger ZZ-type-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 85 Back     information, alignment and structure
>d2fc7a1 g.44.1.6 (A:8-76) Zinc finger ZZ-type-containing protein 3, ZZZ3 {Human (Homo sapiens) [TaxId: 9606]} Length = 69 Back     information, alignment and structure
>d1tota1 g.44.1.6 (A:1-52) CREB-binding protein, CBP {Mouse (Mus musculus) [TaxId: 10090]} Length = 52 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query464
d2dk3a173 E3 ubiquitin-protein ligase hectd1 {Human (Homo sa 99.88
d2dk3a173 E3 ubiquitin-protein ligase hectd1 {Human (Homo sa 99.83
d2dipa185 Zinc finger ZZ-type-containing protein 2 {Human (H 99.6
d2fc7a169 Zinc finger ZZ-type-containing protein 3, ZZZ3 {Hu 99.5
d1tota152 CREB-binding protein, CBP {Mouse (Mus musculus) [T 99.24
d1v5na_89 Pdi-like hypothetical protein At1g60420 {Thale cre 94.19
d1ah9a_71 Translational initiation factor 1, IF1 {Escherichi 84.82
d1nppa258 N-utilization substance G protein NusG, C-terminal 83.31
d1nz9a_58 N-utilization substance G protein NusG, C-terminal 80.22
>d2dk3a1 b.34.19.1 (A:8-80) E3 ubiquitin-protein ligase hectd1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: SH3-like barrel
superfamily: Mib/herc2 domain-like
family: Mib/herc2 domain
domain: E3 ubiquitin-protein ligase hectd1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=2.8e-24  Score=168.62  Aligned_cols=63  Identities=43%  Similarity=0.824  Sum_probs=59.4

Q ss_pred             CcccccceeeeCCCCcccCCCCCCCccceEEEEe-cceEEEEecCCCCCCceeecCCCccccccc
Q psy16233          2 LNIEIGLRVIRGPDWKWLDEDGGEGGLGTVVAVK-SNVVSVIWDLGNKSSCYRVGSENAYDLQVY   65 (464)
Q Consensus         2 ~~i~~G~rVvRG~dW~w~~qDgg~g~~Gtv~~~~-~~~v~V~Wd~g~~~~~YR~G~~g~~DL~~~   65 (464)
                      -+|++|+||||||||+|+|||||+|++|||+++. ++++.|+||+|..+ +||+|++|+|||+++
T Consensus         7 k~i~~G~RVvRG~DWkW~dQDGG~g~~GtV~~~~~~~~v~V~Wd~G~~n-~YR~G~~G~~DLk~~   70 (73)
T d2dk3a1           7 KYMVPGARVIRGLDWKWRDQDGSPQGEGTVTGELHNGWIDVTWDAGGSN-SYRMGAEGKFDLKLA   70 (73)
T ss_dssp             GTCCTTSEEEECTTCCSCCTTCSSCCCEEBCSCCCSSEEEEEETTTEEE-EEEBSTTSCBCEEEC
T ss_pred             ccccCCCeEEECCCCCeeCcCCCCCccceEeeeCCCCEEEEEeCCCCcc-cccccCCCCEEEEec
Confidence            4799999999999999999999999999999654 89999999999999 899999999999985
>d2dk3a1 b.34.19.1 (A:8-80) E3 ubiquitin-protein ligase hectd1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2dipa1 g.44.1.6 (A:8-92) Zinc finger ZZ-type-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fc7a1 g.44.1.6 (A:8-76) Zinc finger ZZ-type-containing protein 3, ZZZ3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1tota1 g.44.1.6 (A:1-52) CREB-binding protein, CBP {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1v5na_ g.49.1.3 (A:) Pdi-like hypothetical protein At1g60420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1ah9a_ b.40.4.5 (A:) Translational initiation factor 1, IF1 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1nppa2 b.34.5.4 (A:191-248) N-utilization substance G protein NusG, C-terminal domain {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1nz9a_ b.34.5.4 (A:) N-utilization substance G protein NusG, C-terminal domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure